BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780913|ref|YP_003065326.1| cold shock protein [Candidatus
Liberibacter asiaticus str. psy62]
         (78 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780913|ref|YP_003065326.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040590|gb|ACT57386.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 78

 Score =  163 bits (413), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND
Sbjct: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60

Query: 61 ANGKYSAENLKLVPKSSN 78
          ANGKYSAENLKLVPKSSN
Sbjct: 61 ANGKYSAENLKLVPKSSN 78


>gi|315122408|ref|YP_004062897.1| cold shock protein [Candidatus Liberibacter solanacearum
          CLso-ZC1]
 gi|313495810|gb|ADR52409.1| cold shock protein [Candidatus Liberibacter solanacearum
          CLso-ZC1]
          Length = 74

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 55/70 (78%), Gaps = 2/70 (2%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RGSIKWY+ +KGYGFIT   + E   DVFLHRSAV SAGL ++ EGQ V YD+V+N+  G
Sbjct: 7  RGSIKWYDANKGYGFITSASAGEK--DVFLHRSAVMSAGLPDVREGQEVIYDFVENETTG 64

Query: 64 KYSAENLKLV 73
          K+SAEN+KLV
Sbjct: 65 KFSAENIKLV 74


>gi|27379238|ref|NP_770767.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27352389|dbj|BAC49392.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 68

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 50/72 (69%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+NP KGYGFI P GS +   DVF+H SAV  AGL  L E Q+V YD V+N 
Sbjct: 1  MPQKGTVKWFNPTKGYGFIKPNGSDK---DVFVHISAVERAGLSTLNENQVVEYDLVEN- 56

Query: 61 ANGKYSAENLKL 72
            GK SAENLK+
Sbjct: 57 -RGKSSAENLKV 67


>gi|158424300|ref|YP_001525592.1| cold shock DNA-binding domain-containing protein [Azorhizobium
           caulinodans ORS 571]
 gi|158331189|dbj|BAF88674.1| cold-shock DNA-binding domain [Azorhizobium caulinodans ORS 571]
          Length = 117

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+NP+KG+GFI P+   + G D F+H SAV  AGL  L EGQ V YD V +  +GK
Sbjct: 51  GTVKWFNPEKGFGFIAPD---DGGADAFVHISAVERAGLPPLREGQKVNYDLVADKRSGK 107

Query: 65  YSAENLKLVP 74
            SA NL LVP
Sbjct: 108 SSASNLTLVP 117


>gi|27382370|ref|NP_773899.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27355541|dbj|BAC52524.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 67

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+ +G++KW+NP KGYGFI P      G DVF+H SAV  AGL  L EGQ V Y+ + N 
Sbjct: 1  MMAKGTVKWFNPTKGYGFIQP---ASGGKDVFVHISAVQKAGLSTLNEGQTVEYEEIAN- 56

Query: 61 ANGKYSAENLKL 72
            GK SAENLK+
Sbjct: 57 -RGKTSAENLKV 67


>gi|92118857|ref|YP_578586.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91801751|gb|ABE64126.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 66

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+NP KGYGFI P G    G DVF+H SAV  AGL  L EGQ V ++ V N   G
Sbjct: 3  KGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLSTLNEGQTVEFEEVAN--RG 57

Query: 64 KYSAENLKL 72
          K SAENLK+
Sbjct: 58 KTSAENLKV 66


>gi|86749607|ref|YP_486103.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris HaA2]
 gi|86572635|gb|ABD07192.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          HaA2]
          Length = 67

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 49/72 (68%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+NP KGYGFI P     SGD DVF+H SAV  AGL  L E Q + YD V+N 
Sbjct: 1  MQKGTVKWFNPTKGYGFIRPT----SGDKDVFVHISAVERAGLSTLNENQAIEYDLVEN- 55

Query: 61 ANGKYSAENLKL 72
            GK SAENLKL
Sbjct: 56 -RGKTSAENLKL 66


>gi|299132091|ref|ZP_07025286.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 gi|298592228|gb|EFI52428.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
          Length = 66

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+NP KGYGFI P G    G DVF+H SAV  AGL +L EGQ + ++ V N   G
Sbjct: 3  KGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLTSLNEGQTIEFEEVAN--RG 57

Query: 64 KYSAENLKL 72
          K SAENLK+
Sbjct: 58 KTSAENLKV 66


>gi|75677234|ref|YP_319655.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
 gi|74422104|gb|ABA06303.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
          Nb-255]
          Length = 66

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+NP KGYGFI P G    G DVF+H SAV  AGL  L EGQ V ++ V N   G
Sbjct: 3  KGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVERAGLSTLNEGQTVEFEEVAN--RG 57

Query: 64 KYSAENLKL 72
          K SAENLK+
Sbjct: 58 KTSAENLKV 66


>gi|209884203|ref|YP_002288060.1| hypothetical protein OCAR_5060 [Oligotropha carboxidovorans OM5]
 gi|209872399|gb|ACI92195.1| conserved domain protein [Oligotropha carboxidovorans OM5]
          Length = 66

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+NP KGYGFI P G    G DVF+H SAV  AGL +L EGQ + ++ V N   G
Sbjct: 3  KGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLSSLNEGQTIEFEEVAN--RG 57

Query: 64 KYSAENLKL 72
          K SAENLK+
Sbjct: 58 KTSAENLKV 66


>gi|148255251|ref|YP_001239836.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
          BTAi1]
 gi|146407424|gb|ABQ35930.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
          Length = 69

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 7/71 (9%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++GS+KW+NP KGYGFI P G    GD DVF+H SAV  AGL  L E Q + YD V+  +
Sbjct: 4  YKGSVKWFNPTKGYGFIKPAG----GDKDVFVHISAVERAGLTTLNENQAIEYDLVE--S 57

Query: 62 NGKYSAENLKL 72
           GK SAENLKL
Sbjct: 58 RGKTSAENLKL 68


>gi|146340323|ref|YP_001205371.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
 gi|146193129|emb|CAL77140.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
          Length = 69

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 7/71 (9%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++GS+KW+NP KGYGFI P G    GD DVF+H SAV  AGL  L E Q + YD V+  +
Sbjct: 4  YKGSVKWFNPTKGYGFIKPTG----GDKDVFVHISAVERAGLTTLNENQAIEYDLVE--S 57

Query: 62 NGKYSAENLKL 72
           GK SAENLKL
Sbjct: 58 RGKTSAENLKL 68


>gi|299131851|ref|ZP_07025046.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 gi|298591988|gb|EFI52188.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
          Length = 69

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI P   T+ G DVF+H SAV  AGL NL EGQ V ++   +   G
Sbjct: 3  QGTVKWFNSQKGFGFIAP---TDGGTDVFVHISAVERAGLSNLAEGQKVEFEAKTDKMRG 59

Query: 64 KYSAENLKLV 73
          K SAENL+L+
Sbjct: 60 KTSAENLQLL 69


>gi|227819992|ref|YP_002823963.1| cold shock protein CspA [Sinorhizobium fredii NGR234]
 gi|36958641|gb|AAQ87109.1| Cold shock protein cspA [Sinorhizobium fredii NGR234]
 gi|227338991|gb|ACP23210.1| cold shock protein CspA [Sinorhizobium fredii NGR234]
          Length = 69

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N  KG+GFI P+ GST    DVF+H SAV  AGL +L EGQ VTYD V+++ +G
Sbjct: 4  GTVKWFNSTKGFGFIQPDDGST----DVFVHISAVERAGLRSLVEGQKVTYDIVRDNRSG 59

Query: 64 KYSAENLK 71
          K SA+NL+
Sbjct: 60 KSSADNLR 67


>gi|85713889|ref|ZP_01044878.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
 gi|85699015|gb|EAQ36883.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
          Length = 66

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+NP KGYGFI P G    G DVF+H SAV  AGL  L EGQ V ++ V N   G
Sbjct: 3  KGIVKWFNPTKGYGFIQPAG---GGKDVFVHISAVERAGLSTLNEGQTVEFEEVAN--RG 57

Query: 64 KYSAENLKL 72
          K SAENLK+
Sbjct: 58 KTSAENLKV 66


>gi|75675791|ref|YP_318212.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
 gi|74420661|gb|ABA04860.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
          Nb-255]
          Length = 67

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P   T    DVF+H SAV  AGL  L E Q + YD V+N  
Sbjct: 1  MQKGTVKWFNPTKGYGFIKP---TTGDRDVFVHISAVERAGLSTLDENQTIEYDLVEN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKI 66


>gi|197104417|ref|YP_002129794.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
           HLK1]
 gi|196477837|gb|ACG77365.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
           HLK1]
          Length = 250

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 3/68 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +KW+NP KG+GFI PEG    G D+F+H SAV  AGL  L EGQ V +D  Q+  +GK
Sbjct: 184 GVVKWFNPTKGFGFIKPEGG---GQDIFVHISAVEQAGLSGLNEGQTVDFDLEQDRRSGK 240

Query: 65  YSAENLKL 72
            SA NLK+
Sbjct: 241 TSATNLKI 248



 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI P+   + G DVF+H SAVA AGL  L EG  V Y+  Q+  +GK
Sbjct: 59  GTVKWFNTAKGFGFIQPD---DGGQDVFVHISAVAQAGLDALNEGDQVEYELEQDRRSGK 115

Query: 65  YSAENL 70
            +A ++
Sbjct: 116 LAATSI 121


>gi|332715879|ref|YP_004443345.1| cold shock-like protein cspA [Agrobacterium sp. H13-3]
 gi|325062564|gb|ADY66254.1| cold shock-like protein cspA [Agrobacterium sp. H13-3]
          Length = 69

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+     G DVF+H SAV  AGL +L +GQ +TYD VQ+  
Sbjct: 1  MNTGTVKWFNATKGFGFIQPD---NGGTDVFVHISAVERAGLRSLNDGQKITYDIVQDRK 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKSSADNLR 67


>gi|316933716|ref|YP_004108698.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris DX-1]
 gi|315601430|gb|ADU43965.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          DX-1]
          Length = 67

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P   T    DVF+H SAV  AGL  L E Q + YD V+N  
Sbjct: 1  MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQAIEYDLVEN-- 55

Query: 62 NGKYSAENLKL 72
           G+ SAENLK+
Sbjct: 56 RGRTSAENLKI 66


>gi|217977958|ref|YP_002362105.1| cold-shock DNA-binding domain protein [Methylocella silvestris
          BL2]
 gi|217503334|gb|ACK50743.1| cold-shock DNA-binding domain protein [Methylocella silvestris
          BL2]
          Length = 69

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NPDKGYGFI P+   + G DVF+H SAV  +GL +L EGQ + Y+ + +   GK
Sbjct: 4  GTVKWFNPDKGYGFIQPD---DGGKDVFVHISAVEQSGLRHLQEGQKINYEVIADKRTGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 SSAGNLR 67


>gi|15965810|ref|NP_386163.1| cold shock transcription regulator protein [Sinorhizobium
          meliloti 1021]
 gi|307311344|ref|ZP_07590987.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307318877|ref|ZP_07598309.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|7387593|sp|Q9Z3S6|CSPA_RHIME RecName: Full=Cold shock protein CspA
 gi|3776223|gb|AAC64672.1| CspA [Sinorhizobium meliloti]
 gi|15075079|emb|CAC46636.1| Cold shock transcriptional regulator [Sinorhizobium meliloti
          1021]
 gi|306895598|gb|EFN26352.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306899645|gb|EFN30273.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 69

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ +L EGQ VTYD V++  
Sbjct: 1  MNSGTVKWFNSTKGFGFIQPD---DGATDVFVHASAVERAGMRSLVEGQKVTYDIVRDTK 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKSSADNLR 67


>gi|209966586|ref|YP_002299501.1| hypothetical protein RC1_3328 [Rhodospirillum centenum SW]
 gi|209960052|gb|ACJ00689.1| conserved domain protein [Rhodospirillum centenum SW]
          Length = 69

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE     G DVF+H SAV  AGL  L+EGQ V+Y+  ++   GK
Sbjct: 4  GTVKWFNSTKGYGFIQPE---NGGADVFVHISAVERAGLSTLSEGQRVSYEEQRDPRRGK 60

Query: 65 YSAENLK 71
           SAENLK
Sbjct: 61 TSAENLK 67


>gi|92117648|ref|YP_577377.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91800542|gb|ABE62917.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 67

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P        DVF+H SAV  AGL  L E Q++ YD V+N  
Sbjct: 1  MQKGTVKWFNPTKGYGFIKPMNDDR---DVFVHISAVERAGLSTLNENQVIEYDLVEN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66


>gi|90423823|ref|YP_532193.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisB18]
 gi|90105837|gb|ABD87874.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB18]
          Length = 67

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P   T    DVF+H SAV  AGL  L E Q + Y+ V+N  
Sbjct: 1  MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQTIEYELVEN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKI 66


>gi|39936116|ref|NP_948392.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris CGA009]
 gi|192291834|ref|YP_001992439.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
 gi|39649970|emb|CAE28494.1| cold shock DNA binding protein [Rhodopseudomonas palustris
          CGA009]
 gi|192285583|gb|ACF01964.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
          Length = 67

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P   T    DVF+H SAV  AGL  L E Q + YD V+N  
Sbjct: 1  MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQPIEYDLVEN-- 55

Query: 62 NGKYSAENLKL 72
           G+ SAENLK+
Sbjct: 56 RGRTSAENLKI 66


>gi|146337756|ref|YP_001202804.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
 gi|146190562|emb|CAL74564.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
          Length = 68

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI P+   + G+DVF+H SAV  AGL  L EGQ + YD   +   G
Sbjct: 2  QGTVKWFNGQKGFGFIQPQ---DGGNDVFVHISAVERAGLAGLAEGQKLNYDVKTDKMRG 58

Query: 64 KYSAENLKLV 73
          K SAENL L+
Sbjct: 59 KTSAENLSLI 68


>gi|146338511|ref|YP_001203559.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
 gi|146191317|emb|CAL75322.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
          Length = 66

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+NP KGYGFI P      G D+F+H SAV  AGL  L EGQ + Y+ + N   G
Sbjct: 3  KGTVKWFNPTKGYGFIQP---AAGGKDIFVHISAVQKAGLATLNEGQTIEYEEIAN--RG 57

Query: 64 KYSAENLKL 72
          + SAENLK+
Sbjct: 58 RSSAENLKV 66


>gi|115525288|ref|YP_782199.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisA53]
 gi|115519235|gb|ABJ07219.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisA53]
          Length = 67

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+NP KGYGFI P     SGD DVF+H SAV  AGL  L E Q + Y+ V+N 
Sbjct: 1  MQKGTVKWFNPTKGYGFIRP----TSGDKDVFVHISAVERAGLSTLNENQPIEYELVEN- 55

Query: 61 ANGKYSAENLKL 72
            GK SAENLK+
Sbjct: 56 -RGKTSAENLKI 66


>gi|297182471|gb|ADI18634.1| cold shock proteins [uncultured Rhodospirillales bacterium
          HF4000_24M03]
          Length = 89

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NP KG+GFI PE   +  +D F+H SAV SAGL  L EGQ V+Y+ +Q   NGK
Sbjct: 24 GTVKWFNPAKGFGFIEPE---DGSNDAFVHISAVESAGLTTLNEGQKVSYE-LQPGKNGK 79

Query: 65 YSAENLKL 72
           SAENL +
Sbjct: 80 SSAENLSV 87


>gi|150397151|ref|YP_001327618.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|150028666|gb|ABR60783.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
          Length = 69

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ +L EGQ VT+D V++  
Sbjct: 1  MNSGTVKWFNSTKGFGFIQPD---DGATDVFVHASAVERAGMRSLVEGQKVTFDIVRDTK 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKSSADNLR 67


>gi|148257897|ref|YP_001242482.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
          BTAi1]
 gi|146410070|gb|ABQ38576.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
          Length = 66

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+NP KGYGFI P      G D+F+H SAV  AGL  L EGQ + Y+ + N   G
Sbjct: 3  KGTVKWFNPTKGYGFIQP---AAGGKDIFVHISAVQKAGLTTLNEGQTIEYEEIAN--RG 57

Query: 64 KYSAENLKL 72
          + SAENLK+
Sbjct: 58 RSSAENLKV 66


>gi|27383360|ref|NP_774889.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27356535|dbj|BAC53514.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 67

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NP KGYGFI P+     G+DVF+H SAV  AG  +L EG  V++D V+N   GK
Sbjct: 4  GTVKWFNPTKGYGFIQPD---SGGNDVFVHISAVEKAGFTSLAEGAKVSFDIVKN--RGK 58

Query: 65 YSAENLKL 72
           SAENL++
Sbjct: 59 ESAENLRI 66


>gi|85714849|ref|ZP_01045835.1| cold shock protein [Nitrobacter sp. Nb-311A]
 gi|85698335|gb|EAQ36206.1| cold shock protein [Nitrobacter sp. Nb-311A]
          Length = 81

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KGYGFI P+G    G+DVF+H SAV  AGL  L EGQ V+++   ++A GK
Sbjct: 16 GIVKWFNSQKGYGFIQPDGG---GNDVFVHISAVQRAGLNGLGEGQKVSFEARTDEARGK 72

Query: 65 YSAENLKL 72
           SA+NL L
Sbjct: 73 VSAQNLSL 80


>gi|115524372|ref|YP_781283.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisA53]
 gi|115518319|gb|ABJ06303.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisA53]
          Length = 69

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   ++ G DVF+H SAV  AGL  L EGQ V+Y  V +   GK
Sbjct: 4  GTVKWFNGQKGFGFIEP---SDGGKDVFVHISAVERAGLTGLAEGQKVSYQVVADKKRGK 60

Query: 65 YSAENLKLV 73
           SAE+L LV
Sbjct: 61 ESAESLALV 69


>gi|182680002|ref|YP_001834148.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
          indica subsp. indica ATCC 9039]
 gi|182635885|gb|ACB96659.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 69

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI P+   E G DVF+H SAV  +GL +L EGQ + YD V +   GK
Sbjct: 4  GTVKWFNAEKGYGFIQPD---EGGKDVFVHISAVEQSGLRHLAEGQKINYDVVPDKRTGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 SSAGNLR 67


>gi|315498658|ref|YP_004087462.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
 gi|315416670|gb|ADU13311.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
          Length = 69

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G+DVF+H SAV  +GL  L EGQ VT++  ++  +GK
Sbjct: 4  GTVKWFNGTKGYGFIQPD---DGGNDVFVHISAVERSGLRGLNEGQKVTFELARDKRSGK 60

Query: 65 YSAENLKL 72
           SAENL++
Sbjct: 61 MSAENLQV 68


>gi|39936734|ref|NP_949010.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris CGA009]
 gi|316933046|ref|YP_004108028.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris DX-1]
 gi|39650590|emb|CAE29113.1| cold shock DNA binding protein [Rhodopseudomonas palustris
          CGA009]
 gi|315600760|gb|ADU43295.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          DX-1]
          Length = 84

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+N  KGYGFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  
Sbjct: 15 VSMGTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 71

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 72 SGKSSADNLR 81


>gi|254702210|ref|ZP_05164038.1| cold shock protein CSPA [Brucella suis bv. 5 str. 513]
 gi|261752785|ref|ZP_05996494.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 5 str. 513]
 gi|261742538|gb|EEY30464.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 5 str. 513]
          Length = 69

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+
Sbjct: 4  GTVKWFNATKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 60

Query: 65 YSAENL 70
           SA+NL
Sbjct: 61 SSADNL 66


>gi|23502361|ref|NP_698488.1| cold-shock family protein [Brucella suis 1330]
 gi|161619440|ref|YP_001593327.1| hypothetical protein BCAN_A1530 [Brucella canis ATCC 23365]
 gi|163843747|ref|YP_001628151.1| hypothetical protein BSUIS_A1549 [Brucella suis ATCC 23445]
 gi|225627936|ref|ZP_03785972.1| cold-shock family protein [Brucella ceti str. Cudo]
 gi|225852973|ref|YP_002733206.1| hypothetical protein BMEA_A1545 [Brucella melitensis ATCC 23457]
 gi|254704745|ref|ZP_05166573.1| cold shock protein CSPA [Brucella suis bv. 3 str. 686]
 gi|254708158|ref|ZP_05169986.1| cold shock protein CSPA [Brucella pinnipedialis M163/99/10]
 gi|254710530|ref|ZP_05172341.1| cold shock protein CSPA [Brucella pinnipedialis B2/94]
 gi|254714712|ref|ZP_05176523.1| cold shock protein CSPA [Brucella ceti M644/93/1]
 gi|254717773|ref|ZP_05179584.1| cold shock protein CSPA [Brucella ceti M13/05/1]
 gi|254719531|ref|ZP_05181342.1| cold shock protein CSPA [Brucella sp. 83/13]
 gi|256032023|ref|ZP_05445637.1| cold shock protein CSPA [Brucella pinnipedialis M292/94/1]
 gi|256045115|ref|ZP_05448016.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061545|ref|ZP_05451687.1| cold shock protein CSPA [Brucella neotomae 5K33]
 gi|256160221|ref|ZP_05457915.1| cold shock protein CSPA [Brucella ceti M490/95/1]
 gi|256255427|ref|ZP_05460963.1| cold shock protein CSPA [Brucella ceti B1/94]
 gi|256369909|ref|YP_003107420.1| cold-shock family protein [Brucella microti CCM 4915]
 gi|260169160|ref|ZP_05755971.1| cold shock protein CSPA [Brucella sp. F5/99]
 gi|260565284|ref|ZP_05835768.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. 16M]
 gi|260566008|ref|ZP_05836478.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 4 str. 40]
 gi|261219622|ref|ZP_05933903.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M13/05/1]
 gi|261315666|ref|ZP_05954863.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M163/99/10]
 gi|261322510|ref|ZP_05961707.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M644/93/1]
 gi|261325555|ref|ZP_05964752.1| cold-shock DNA-binding domain-containing protein [Brucella
          neotomae 5K33]
 gi|261755443|ref|ZP_05999152.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 3 str. 686]
 gi|265989135|ref|ZP_06101692.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M292/94/1]
 gi|265991548|ref|ZP_06104105.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. Rev.1]
 gi|265998596|ref|ZP_06111153.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M490/95/1]
 gi|306838469|ref|ZP_07471310.1| cold-shock family protein [Brucella sp. NF 2653]
 gi|306843158|ref|ZP_07475777.1| cold-shock family protein [Brucella sp. BO2]
 gi|306844496|ref|ZP_07477085.1| cold-shock family protein [Brucella sp. BO1]
 gi|23348343|gb|AAN30403.1| cold-shock family protein [Brucella suis 1330]
 gi|161336251|gb|ABX62556.1| Hypothetical protein BCAN_A1530 [Brucella canis ATCC 23365]
 gi|163674470|gb|ABY38581.1| Hypothetical protein BSUIS_A1549 [Brucella suis ATCC 23445]
 gi|225617099|gb|EEH14145.1| cold-shock family protein [Brucella ceti str. Cudo]
 gi|225641338|gb|ACO01252.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|256000072|gb|ACU48471.1| cold-shock family protein [Brucella microti CCM 4915]
 gi|260151352|gb|EEW86446.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. 16M]
 gi|260155526|gb|EEW90606.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 4 str. 40]
 gi|260924711|gb|EEX91279.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M13/05/1]
 gi|261295200|gb|EEX98696.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M644/93/1]
 gi|261301535|gb|EEY05032.1| cold-shock DNA-binding domain-containing protein [Brucella
          neotomae 5K33]
 gi|261304692|gb|EEY08189.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M163/99/10]
 gi|261745196|gb|EEY33122.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 3 str. 686]
 gi|262553220|gb|EEZ09054.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M490/95/1]
 gi|263002332|gb|EEZ14907.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. Rev.1]
 gi|264661332|gb|EEZ31593.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M292/94/1]
 gi|306275107|gb|EFM56863.1| cold-shock family protein [Brucella sp. BO1]
 gi|306286653|gb|EFM58214.1| cold-shock family protein [Brucella sp. BO2]
 gi|306406433|gb|EFM62671.1| cold-shock family protein [Brucella sp. NF 2653]
          Length = 69

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+
Sbjct: 4  GTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 60

Query: 65 YSAENL 70
           SA+NL
Sbjct: 61 SSADNL 66


>gi|91977426|ref|YP_570085.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          BisB5]
 gi|91683882|gb|ABE40184.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB5]
          Length = 67

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+NP KGYGFI P     SGD DVF+H SAV  AGL  L E Q + Y+ V N 
Sbjct: 1  MQKGTVKWFNPTKGYGFIRP----TSGDKDVFVHISAVERAGLSTLNENQTIEYELVDN- 55

Query: 61 ANGKYSAENLKL 72
            GK SAENLK+
Sbjct: 56 -RGKTSAENLKV 66


>gi|209884462|ref|YP_002288319.1| hypothetical protein OCAR_5322 [Oligotropha carboxidovorans OM5]
 gi|209872658|gb|ACI92454.1| conserved domain protein [Oligotropha carboxidovorans OM5]
          Length = 69

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G+DVF+H SAV  AGL  L EGQ V ++   ++  GK
Sbjct: 4  GTVKWFNGQKGFGFIAPQ---DGGNDVFVHISAVERAGLTGLAEGQKVEFEAKTDNMRGK 60

Query: 65 YSAENLKLV 73
           SAENL LV
Sbjct: 61 TSAENLSLV 69


>gi|86748914|ref|YP_485410.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris HaA2]
 gi|91977978|ref|YP_570637.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          BisB5]
 gi|148258227|ref|YP_001242812.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
          BTAi1]
 gi|192292560|ref|YP_001993165.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
 gi|86571942|gb|ABD06499.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          HaA2]
 gi|91684434|gb|ABE40736.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB5]
 gi|146410400|gb|ABQ38906.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
 gi|192286309|gb|ACF02690.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
          Length = 70

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  +GK
Sbjct: 4  GTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60

Query: 65 YSAENLK 71
           SA+NL+
Sbjct: 61 SSADNLR 67


>gi|153009006|ref|YP_001370221.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
          anthropi ATCC 49188]
 gi|151560894|gb|ABS14392.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
          anthropi ATCC 49188]
          Length = 69

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+
Sbjct: 4  GTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLATLDEGQKVSYEIVQDRRSGR 60

Query: 65 YSAENL 70
           SA+NL
Sbjct: 61 SSADNL 66


>gi|27375170|ref|NP_766699.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27348306|dbj|BAC45324.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 77

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 50/71 (70%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+NP KGYGFI P+   + G+DVF+H SAV  AG  +L EG  V+Y+ V N +
Sbjct: 10 VALGTVKWFNPTKGYGFIAPD---DGGNDVFVHISAVEKAGYTSLVEGAKVSYELVMNRS 66

Query: 62 NGKYSAENLKL 72
           GK +AENL+L
Sbjct: 67 -GKQAAENLRL 76


>gi|115525742|ref|YP_782653.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisA53]
 gi|209886524|ref|YP_002290381.1| hypothetical protein OCAR_7413 [Oligotropha carboxidovorans OM5]
 gi|299132279|ref|ZP_07025474.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 gi|115519689|gb|ABJ07673.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisA53]
 gi|209874720|gb|ACI94516.1| conserved domain protein [Oligotropha carboxidovorans OM5]
 gi|298592416|gb|EFI52616.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
          Length = 70

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  +GK
Sbjct: 4  GTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60

Query: 65 YSAENLK 71
           SA+NL+
Sbjct: 61 SSADNLR 67


>gi|146338131|ref|YP_001203179.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
 gi|146190937|emb|CAL74942.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
          Length = 70

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  +GK
Sbjct: 4  GTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60

Query: 65 YSAENLK 71
           SA+NL+
Sbjct: 61 SSADNLR 67


>gi|92116020|ref|YP_575749.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91798914|gb|ABE61289.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 68

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  +GK
Sbjct: 2  GTVKWFNATKGYGFIQPD---DGGNDVFVHVSAVERAGLGTLREGQKISYEIVADRRSGK 58

Query: 65 YSAENLK 71
           SA+NL+
Sbjct: 59 SSADNLR 65


>gi|62290382|ref|YP_222175.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|189024609|ref|YP_001935377.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
 gi|254689680|ref|ZP_05152934.1| cold shock DNA-binding domain-containing protein [Brucella
          abortus bv. 6 str. 870]
 gi|254694170|ref|ZP_05155998.1| cold shock DNA-binding domain-containing protein [Brucella
          abortus bv. 3 str. Tulya]
 gi|254697823|ref|ZP_05159651.1| cold shock DNA-binding domain-containing protein [Brucella
          abortus bv. 2 str. 86/8/59]
 gi|254730712|ref|ZP_05189290.1| cold shock DNA-binding domain-containing protein [Brucella
          abortus bv. 4 str. 292]
 gi|256257931|ref|ZP_05463467.1| cold shock DNA-binding domain-containing protein [Brucella
          abortus bv. 9 str. C68]
 gi|260546920|ref|ZP_05822659.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus NCTC 8038]
 gi|260755213|ref|ZP_05867561.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 6 str. 870]
 gi|260758433|ref|ZP_05870781.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 4 str. 292]
 gi|260762259|ref|ZP_05874602.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 2 str. 86/8/59]
 gi|261214476|ref|ZP_05928757.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 3 str. Tulya]
 gi|62196514|gb|AAX74814.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|189020181|gb|ACD72903.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
 gi|260095970|gb|EEW79847.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus NCTC 8038]
 gi|260668751|gb|EEX55691.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 4 str. 292]
 gi|260672691|gb|EEX59512.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 2 str. 86/8/59]
 gi|260675321|gb|EEX62142.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 6 str. 870]
 gi|260916083|gb|EEX82944.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 3 str. Tulya]
          Length = 69

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+
Sbjct: 4  GTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 60

Query: 65 YSAENL 70
           SA+NL
Sbjct: 61 SSADNL 66


>gi|75674509|ref|YP_316930.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
 gi|85713497|ref|ZP_01044487.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
 gi|74419379|gb|ABA03578.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
          Nb-255]
 gi|85699401|gb|EAQ37268.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
          Length = 68

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  +GK
Sbjct: 2  GTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 58

Query: 65 YSAENLK 71
           SA+NL+
Sbjct: 59 SSADNLR 65


>gi|300023882|ref|YP_003756493.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299525703|gb|ADJ24172.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 69

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G    G+DVF+H SAV  AGL  L EGQ ++++ V +  
Sbjct: 1  MQTGTVKWFNSQKGFGFIQPDGG---GNDVFVHISAVERAGLNGLNEGQKISFEIVADRR 57

Query: 62 NGKYSAENLKLV 73
          +GK SA+NL+ V
Sbjct: 58 SGKSSADNLRPV 69


>gi|163793339|ref|ZP_02187314.1| pyridoxal phosphate biosynthetic protein PdxJ [alpha
          proteobacterium BAL199]
 gi|159181141|gb|EDP65656.1| pyridoxal phosphate biosynthetic protein PdxJ [alpha
          proteobacterium BAL199]
          Length = 70

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G    G D F+H SAV  +GL +L EGQ V Y+ V +  +GK
Sbjct: 4  GTVKWFNAQKGFGFIEPDGG---GSDAFVHISAVERSGLSDLREGQKVDYELVSDRKSGK 60

Query: 65 YSAENLKLV 73
           SA+NLK++
Sbjct: 61 MSADNLKVL 69


>gi|288962373|ref|YP_003452668.1| cold shock protein [Azospirillum sp. B510]
 gi|288914639|dbj|BAI76124.1| cold shock protein [Azospirillum sp. B510]
          Length = 69

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE     G DVF+H SAV  AGL +L +GQ ++Y+  ++   GK
Sbjct: 4  GTVKWFNSTKGFGFIQPE---SGGPDVFVHISAVERAGLRSLVDGQKISYEEQRDPKRGK 60

Query: 65 YSAENLKLV 73
           SAENLK V
Sbjct: 61 TSAENLKAV 69


>gi|17986801|ref|NP_539435.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M]
 gi|17982433|gb|AAL51699.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M]
          Length = 101

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+
Sbjct: 36 GTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 92

Query: 65 YSAENL 70
           SA+NL
Sbjct: 93 SSADNL 98


>gi|237815887|ref|ZP_04594884.1| cold-shock family protein [Brucella abortus str. 2308 A]
 gi|237789185|gb|EEP63396.1| cold-shock family protein [Brucella abortus str. 2308 A]
          Length = 110

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+
Sbjct: 45  GTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 101

Query: 65  YSAENL 70
            SA+NL
Sbjct: 102 SSADNL 107


>gi|82700304|ref|YP_414878.1| cold shock DNA-binding domain-containing protein [Brucella
          melitensis biovar Abortus 2308]
 gi|297248768|ref|ZP_06932486.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
          bv. 5 str. B3196]
 gi|82616405|emb|CAJ11468.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus
          2308]
 gi|297175937|gb|EFH35284.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
          bv. 5 str. B3196]
          Length = 101

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+
Sbjct: 36 GTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 92

Query: 65 YSAENL 70
           SA+NL
Sbjct: 93 SSADNL 98


>gi|239832368|ref|ZP_04680697.1| cold-shock family protein [Ochrobactrum intermedium LMG 3301]
 gi|239824635|gb|EEQ96203.1| cold-shock family protein [Ochrobactrum intermedium LMG 3301]
          Length = 110

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+
Sbjct: 45  GTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLATLDEGQKVSYEIVQDRRSGR 101

Query: 65  YSAENL 70
            SA+NL
Sbjct: 102 SSADNL 107


>gi|217977240|ref|YP_002361387.1| cold-shock DNA-binding domain protein [Methylocella silvestris
          BL2]
 gi|217502616|gb|ACK50025.1| cold-shock DNA-binding domain protein [Methylocella silvestris
          BL2]
          Length = 70

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G+D F+H SAV  AG+ +L EGQ V ++ V +  +GK
Sbjct: 4  GTVKWFNSQKGFGFIAPD---DGGNDAFVHISAVERAGIGDLQEGQKVGFELVADRKSGK 60

Query: 65 YSAENLKLV 73
           SA+NLKL+
Sbjct: 61 MSADNLKLL 69


>gi|92118897|ref|YP_578626.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91801791|gb|ABE64166.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 69

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G    G+DVF+H SAV  AGL  L EGQ V+++   +   GK
Sbjct: 4  GTVKWFNSQKGFGFIQPDGG---GNDVFVHISAVQRAGLNGLGEGQKVSFETKTDKMRGK 60

Query: 65 YSAENLKL 72
           SAENL L
Sbjct: 61 ASAENLSL 68


>gi|148258722|ref|YP_001243307.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
          BTAi1]
 gi|146410895|gb|ABQ39401.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
          Length = 69

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V +D   +   G
Sbjct: 3  QGTVKWFNGQKGFGFIQPQ---DGGTDVFVHISAVERAGLGGLAEGQKVNFDLKTDKMRG 59

Query: 64 KYSAENLKL 72
          K SAENL L
Sbjct: 60 KVSAENLSL 68


>gi|319403844|emb|CBI77430.1| cold shock protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 69

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 50/68 (73%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          +G++KW+N +KG+GFI P +GS     DVF+H SAV  +GL NL EGQ ++YD +Q+  +
Sbjct: 3  KGTVKWFNTNKGFGFIQPNDGSA----DVFVHISAVERSGLHNLNEGQKISYDVLQDRRS 58

Query: 63 GKYSAENL 70
          GK++A NL
Sbjct: 59 GKFAAGNL 66


>gi|27379097|ref|NP_770626.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27352247|dbj|BAC49251.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 69

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   +   DVF+H SAV  AGL +L EGQ V++D V +  +GK
Sbjct: 4  GTVKWFNTQKGYGFIQPDDGQK---DVFVHISAVERAGLSSLNEGQKVSFDIVADRRSGK 60

Query: 65 YSAENLKL 72
           SA+NL++
Sbjct: 61 SSADNLRV 68


>gi|27379706|ref|NP_771235.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27352858|dbj|BAC49860.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 75

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+   + G DVF+H SAV  AG+  L EGQ V+++ V +  
Sbjct: 7  MNTGTVKWFNGQKGFGFIQPD---QGGQDVFVHISAVERAGMSTLNEGQKVSFEIVADRR 63

Query: 62 NGKYSAENLKLV 73
           GK +AENL+ V
Sbjct: 64 TGKSAAENLRAV 75


>gi|197106095|ref|YP_002131472.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
 gi|196479515|gb|ACG79043.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
          Length = 69

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 49/67 (73%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G+DVF+H SAV  AG+ NL+EGQ V+++  ++  +GK
Sbjct: 4  GTVKWFNGQKGFGFIQPD---DGGNDVFVHISAVERAGMSNLSEGQKVSFELQKDSRSGK 60

Query: 65 YSAENLK 71
           SAE L+
Sbjct: 61 MSAEQLQ 67


>gi|86749297|ref|YP_485793.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris HaA2]
 gi|91977723|ref|YP_570382.1| cold-shock protein, DNA-binding [Rhodopseudomonas palustris
          BisB5]
 gi|86572325|gb|ABD06882.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          HaA2]
 gi|91684179|gb|ABE40481.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB5]
          Length = 69

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P    + G+DVF+H SAV  AGL  L EGQ V ++   +   GK
Sbjct: 4  GTVKWFNGQKGFGFIAP---NDGGNDVFVHISAVERAGLSGLAEGQKVNFELKTDKMRGK 60

Query: 65 YSAENLKLV 73
           SAENL+LV
Sbjct: 61 TSAENLELV 69


>gi|90425189|ref|YP_533559.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisB18]
 gi|90107203|gb|ABD89240.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB18]
          Length = 70

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  +GK
Sbjct: 4  GTVKWFNATKGFGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60

Query: 65 YSAENLK 71
           SA+NL+
Sbjct: 61 SSADNLR 67


>gi|294085741|ref|YP_003552501.1| cold-shock DNA-binding domain-containing protein [Candidatus
          Puniceispirillum marinum IMCC1322]
 gi|292665316|gb|ADE40417.1| Cold-shock DNA-binding domain protein [Candidatus
          Puniceispirillum marinum IMCC1322]
          Length = 76

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 53/72 (73%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFI P+   +SG+DVF+H +AV ++GL  L EGQ VTY+ ++   
Sbjct: 8  MSQGTVKWFNTQKGYGFIDPD---DSGNDVFVHITAVQNSGLNGLNEGQKVTYE-LEEQR 63

Query: 62 NGKYSAENLKLV 73
          NGK +A NL++V
Sbjct: 64 NGKMAAVNLEVV 75


>gi|163850319|ref|YP_001638362.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218528876|ref|YP_002419692.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240137390|ref|YP_002961861.1| major cold shock protein [Methylobacterium extorquens AM1]
 gi|254559570|ref|YP_003066665.1| major cold shock protein [Methylobacterium extorquens DM4]
 gi|163661924|gb|ABY29291.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218521179|gb|ACK81764.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240007358|gb|ACS38584.1| major cold shock protein [Methylobacterium extorquens AM1]
 gi|254266848|emb|CAX22647.1| major cold shock protein [Methylobacterium extorquens DM4]
          Length = 69

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL NL EGQ V+Y+ + +  +GK
Sbjct: 4  GTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGLRNLVEGQKVSYEVLTDKRSGK 60

Query: 65 YSAENLKLV 73
           +A NL+ V
Sbjct: 61 DAAGNLQAV 69


>gi|85714683|ref|ZP_01045670.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
 gi|85698568|gb|EAQ36438.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
          Length = 90

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P      G+DVF+H SAV  AGL  L EGQ VT++   +   GK
Sbjct: 25 GTVKWFNGQKGFGFIQPN---NGGNDVFVHISAVERAGLSGLNEGQQVTFEVKTDKMRGK 81

Query: 65 YSAENLKL 72
           SAENL L
Sbjct: 82 VSAENLSL 89


>gi|192292246|ref|YP_001992851.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
 gi|192285995|gb|ACF02376.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
          Length = 69

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   ++ G+DVF+H SAV  AGL  L EGQ V+++   +   GK
Sbjct: 4  GTVKWFNGQKGFGFIAP---SDGGNDVFVHISAVERAGLTGLAEGQKVSFEVKTDKMRGK 60

Query: 65 YSAENLKL 72
           SAENL L
Sbjct: 61 SSAENLAL 68


>gi|319406855|emb|CBI80490.1| cold shock protein [Bartonella sp. 1-1C]
          Length = 69

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KG+GFI P +GS     DVF+H SAV  +GL NL EGQ ++YD +Q+ 
Sbjct: 1  MSKGTVKWFNSNKGFGFIQPNDGSA----DVFVHISAVERSGLQNLNEGQKISYDVLQDR 56

Query: 61 ANGKYSAENL 70
           +GK++A NL
Sbjct: 57 RSGKFAAGNL 66


>gi|39936462|ref|NP_948738.1| cold shock DNA binding protein [Rhodopseudomonas palustris
          CGA009]
 gi|39650318|emb|CAE28840.1| cold shock DNA binding protein [Rhodopseudomonas palustris
          CGA009]
          Length = 75

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   ++ G+DVF+H SAV  AGL  L EGQ V+++   +   GK
Sbjct: 10 GTVKWFNGQKGFGFIAP---SDGGNDVFVHISAVERAGLTGLAEGQKVSFEVKTDKMRGK 66

Query: 65 YSAENLKL 72
           SAENL L
Sbjct: 67 SSAENLAL 74


>gi|323136224|ref|ZP_08071306.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
 gi|322398298|gb|EFY00818.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
          Length = 70

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G DVF+H SAV  AGL +L EGQ V+Y+ V +   GK
Sbjct: 4  GTVKWFNSQKGFGFIQPDAG---GADVFVHISAVERAGLRDLLEGQKVSYEVVVDTRRGK 60

Query: 65 YSAENLKL 72
           SA+NL++
Sbjct: 61 SSADNLQI 68


>gi|90425745|ref|YP_534115.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisB18]
 gi|90107759|gb|ABD89796.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB18]
          Length = 66

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI P   +  G DVF+H SAV  AGL  L EGQ V ++ V N   G
Sbjct: 3  KGTVKWFNATKGFGFIQP---SNGGKDVFVHISAVEKAGLSTLNEGQTVEFEEVAN--RG 57

Query: 64 KYSAENLKL 72
          K SAENLK+
Sbjct: 58 KTSAENLKV 66


>gi|86356809|ref|YP_468701.1| cold shock protein [Rhizobium etli CFN 42]
 gi|86280911|gb|ABC89974.1| cold shock protein [Rhizobium etli CFN 42]
          Length = 69

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N  KG+GFI P+ GST    DVF+H SAV  AG+  LTEGQ V YD V++  +G
Sbjct: 4  GVVKWFNGTKGFGFIQPDDGST----DVFVHISAVERAGMRELTEGQKVRYDLVRDKRSG 59

Query: 64 KYSAENLK 71
          K SA+NL+
Sbjct: 60 KNSADNLQ 67


>gi|115526308|ref|YP_783219.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisA53]
 gi|115520255|gb|ABJ08239.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisA53]
          Length = 66

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NP KGYGFI P   +  G DVF+H SAV+ AGL  L EGQ + ++ V N   G+
Sbjct: 4  GTVKWFNPTKGYGFIQP---SNGGKDVFVHISAVSRAGLSTLNEGQSLEFEEVAN--RGR 58

Query: 65 YSAENLKL 72
           SAENL++
Sbjct: 59 TSAENLRV 66


>gi|92118046|ref|YP_577775.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91800940|gb|ABE63315.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 69

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G    G D+F+H SAV  AGL +L +GQ V+++   +   GK
Sbjct: 4  GTVKWFNATKGFGFIQPDGG---GQDIFVHTSAVERAGLSSLNDGQKVSFEAKTDSMRGK 60

Query: 65 YSAENLKL 72
           SAENL++
Sbjct: 61 TSAENLRV 68


>gi|256114052|ref|ZP_05454822.1| cold shock protein CSPA [Brucella melitensis bv. 3 str. Ether]
 gi|265995386|ref|ZP_06107943.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 3 str. Ether]
 gi|262766499|gb|EEZ12288.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 3 str. Ether]
          Length = 69

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G +VF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+
Sbjct: 4  GTVKWFNTTKGFGFIQPD---QGGTNVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 60

Query: 65 YSAENL 70
           SA+NL
Sbjct: 61 SSADNL 66


>gi|316933345|ref|YP_004108327.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris DX-1]
 gi|315601059|gb|ADU43594.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          DX-1]
          Length = 69

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   ++ G+DVF+H SAV  AGL  L EGQ V+++   +   GK
Sbjct: 4  GTVKWFNGQKGFGFIAP---SDGGNDVFVHISAVERAGLSGLAEGQQVSFEVKVDKMRGK 60

Query: 65 YSAENLKL 72
           SAENL L
Sbjct: 61 SSAENLAL 68


>gi|163867963|ref|YP_001609167.1| cold shock protein [Bartonella tribocorum CIP 105476]
 gi|161017614|emb|CAK01172.1| cold shock protein [Bartonella tribocorum CIP 105476]
          Length = 69

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   ++   DVF+H SAV  +GL NL EGQ V+YD +Q+  +GK
Sbjct: 4  GTVKWFNTTKGFGFIQP---SDGSADVFVHISAVERSGLSNLNEGQKVSYDVLQDRRSGK 60

Query: 65 YSAENL 70
          ++A NL
Sbjct: 61 FAAGNL 66


>gi|170745542|ref|YP_001766999.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium radiotolerans JCM 2831]
 gi|170659143|gb|ACB28197.1| cold-shock DNA-binding domain protein [Methylobacterium
          radiotolerans JCM 2831]
          Length = 69

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL +L EGQ + YD   +  +GK
Sbjct: 4  GTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGLRSLNEGQKIAYDVEADRRSGK 60

Query: 65 YSAENLK 71
           SA NLK
Sbjct: 61 ESAANLK 67


>gi|49475887|ref|YP_033928.1| cold shock protein [Bartonella henselae str. Houston-1]
 gi|49238695|emb|CAF27946.1| Cold shock protein [Bartonella henselae str. Houston-1]
          Length = 69

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   ++   DVF+H SAV  +GL NL EGQ V+YD +Q+  +GK
Sbjct: 4  GTVKWFNTTKGFGFIQP---SDGSADVFVHISAVERSGLSNLNEGQKVSYDVLQDRRSGK 60

Query: 65 YSAENL 70
          ++A NL
Sbjct: 61 FAAGNL 66


>gi|23011600|ref|ZP_00051912.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 69

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+     G DVF+H SAV  AGL NL EGQ V+Y+ + +  +GK
Sbjct: 4  GTVKWFNETKGYGFIQPD---NGGKDVFVHISAVERAGLRNLVEGQKVSYEVLTDKRSGK 60

Query: 65 YSAENLKLV 73
           +A NL+ V
Sbjct: 61 DAAGNLQAV 69


>gi|85717084|ref|ZP_01048045.1| cold shock protein [Nitrobacter sp. Nb-311A]
 gi|85696122|gb|EAQ34019.1| cold shock protein [Nitrobacter sp. Nb-311A]
          Length = 70

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+N  KGYGFI PE     G DVF+H SAV  AG  +L EG  V+Y+ V N  
Sbjct: 4  VAIGTVKWFNGQKGYGFIEPE---SGGKDVFVHISAVEKAGFTSLAEGAKVSYEVVMN-- 58

Query: 62 NGKYSAENLKL 72
           GK SAENL++
Sbjct: 59 RGKESAENLRI 69


>gi|296447314|ref|ZP_06889242.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
 gi|296255179|gb|EFH02278.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
          Length = 69

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   ++G DVF+H SAV  AGL +L EGQ + Y+  Q+   GK
Sbjct: 4  GTVKWFNAQKGYGFIQPD---DNGKDVFVHISAVERAGLRDLREGQKLDYELTQDRRTGK 60

Query: 65 YSAENLK 71
           +A+ LK
Sbjct: 61 SAADRLK 67


>gi|159185613|ref|NP_357478.2| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|159140747|gb|AAK90263.2| cold shock protein [Agrobacterium tumefaciens str. C58]
          Length = 69

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+     G DVF+H SAV  AG+ +L +GQ ++Y+ VQ+  
Sbjct: 1  MNTGTVKWFNATKGFGFIQPD---NGGTDVFVHISAVERAGMRSLNDGQKISYEIVQDRR 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKSSADNLQ 67


>gi|27377058|ref|NP_768587.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|12620649|gb|AAG60925.1|AF322013_44 ID534 [Bradyrhizobium japonicum]
 gi|27350201|dbj|BAC47212.1| blr1947 [Bradyrhizobium japonicum USDA 110]
          Length = 120

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 4/71 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V  G++KW+NP KGYGF+ P+   + G DVF+H SAV  AG  +L EG  V Y+ V N  
Sbjct: 53  VALGTVKWFNPTKGYGFVAPD---DGGKDVFVHISAVEKAGYTSLVEGAKVGYELVTNR- 108

Query: 62  NGKYSAENLKL 72
           +GK +AENL+L
Sbjct: 109 SGKQAAENLRL 119


>gi|260432172|ref|ZP_05786143.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416000|gb|EEX09259.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 68

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE     G DVF+H SA+  +GL  L + Q VTYD VQ+  +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPE---TGGKDVFVHISALERSGLTGLADNQKVTYD-VQSGRDGR 59

Query: 65 YSAENLKLV 73
           SAENL+LV
Sbjct: 60 ESAENLQLV 68


>gi|27376556|ref|NP_768085.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27349697|dbj|BAC46710.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 70

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ ++Y+ V +  +GK
Sbjct: 4  GTVKWFNATKGFGFIQPD---DGGKDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60

Query: 65 YSAENLK 71
           +A+NL+
Sbjct: 61 SAADNLR 67


>gi|296446940|ref|ZP_06888875.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
 gi|296255507|gb|EFH02599.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
          Length = 69

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G DVF+H SAV  AG+  L EGQ + +D V+++ +GK
Sbjct: 4  GTVKWFNATKGFGFIQPD---NGGADVFVHISAVERAGMQTLAEGQKIQFDLVRDNKSGK 60

Query: 65 YSAENLKL 72
           SA NL++
Sbjct: 61 SSAGNLQI 68


>gi|188580080|ref|YP_001923525.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
 gi|179343578|gb|ACB78990.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
          Length = 69

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+     G DVF+H SAV  AGL NL EGQ ++Y+ + +  +GK
Sbjct: 4  GTVKWFNETKGYGFIQPD---NGGKDVFVHISAVERAGLRNLVEGQKISYEVLTDKRSGK 60

Query: 65 YSAENLKLV 73
           +A NL+ V
Sbjct: 61 DAAGNLQAV 69


>gi|92116417|ref|YP_576146.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91799311|gb|ABE61686.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 69

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G    G D+F+H SAV  AGL +L +GQ V+++   +   GK
Sbjct: 4  GTVKWFNATKGFGFIQPDGG---GQDIFVHISAVERAGLSSLNDGQKVSFEAKTDSMRGK 60

Query: 65 YSAENLKL 72
           SAENL++
Sbjct: 61 TSAENLRV 68


>gi|190890873|ref|YP_001977415.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|218463533|ref|ZP_03503624.1| cold shock protein [Rhizobium etli Kim 5]
 gi|218507653|ref|ZP_03505531.1| cold shock protein [Rhizobium etli Brasil 5]
 gi|218514329|ref|ZP_03511169.1| cold shock protein [Rhizobium etli 8C-3]
 gi|218663162|ref|ZP_03519092.1| cold shock protein [Rhizobium etli IE4771]
 gi|218671488|ref|ZP_03521158.1| cold shock protein [Rhizobium etli GR56]
 gi|190696152|gb|ACE90237.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|327190699|gb|EGE57781.1| cold shock protein [Rhizobium etli CNPAF512]
          Length = 69

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N  KG+GFI P+ GST    DVF+H SAV  AG+  LTEGQ V YD V++  +G
Sbjct: 4  GVVKWFNGTKGFGFIQPDDGST----DVFVHISAVERAGMRELTEGQKVRYDLVRDKRSG 59

Query: 64 KYSAENLK 71
          K +A+NL+
Sbjct: 60 KNAADNLQ 67


>gi|295697365|ref|YP_003590603.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
 gi|295412967|gb|ADG07459.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
          Length = 67

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 5/64 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+NPDKGYGFI    S E G+DVF+H SA+ S G   L+EGQLV +D VQ  A G
Sbjct: 2  QGRVKWFNPDKGYGFI----SREDGEDVFVHYSAIQSQGFRTLSEGQLVEFDIVQG-ARG 56

Query: 64 KYSA 67
            +A
Sbjct: 57 PQAA 60


>gi|16519680|ref|NP_443800.1| putative cold-shock DNA-binding domain-containing protein
          [Sinorhizobium fredii NGR234]
 gi|2493775|sp|P55390|Y4CH_RHISN RecName: Full=Probable cold shock protein y4cH
 gi|2182333|gb|AAB92423.1| putative cold-shock DNA-binding domain-containing protein
          [Sinorhizobium fredii NGR234]
          Length = 69

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G++KW+N  KG+GFI P+  +    DVF+H SAV  AGL  L +GQ ++Y+ V++ 
Sbjct: 1  MMATGTVKWFNATKGFGFIQPDDGSA---DVFVHISAVERAGLRELKDGQKISYELVKDR 57

Query: 61 ANGKYSAENLK 71
           +GK SA+NL+
Sbjct: 58 KSGKMSADNLQ 68


>gi|27378265|ref|NP_769794.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27351412|dbj|BAC48419.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 69

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G+DVF+H SAV  AGL  L EGQ V ++   +   GK
Sbjct: 4  GTVKWFNGQKGFGFIQPD---DGGNDVFVHVSAVERAGLSGLAEGQKVNFEAKTDKMRGK 60

Query: 65 YSAENLKL 72
           SAENL L
Sbjct: 61 VSAENLSL 68


>gi|150377524|ref|YP_001314119.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|150032071|gb|ABR64186.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
          Length = 68

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   +   DVF+H SAV  AGL +L +GQ +TY+ V++  +GK
Sbjct: 4  GTVKWFNATKGFGFIQPD---DGSPDVFVHISAVERAGLQDLKDGQKITYELVKDRKSGK 60

Query: 65 YSAENLK 71
           SA+NL+
Sbjct: 61 MSADNLR 67


>gi|329849353|ref|ZP_08264199.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
 gi|328841264|gb|EGF90834.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
          Length = 67

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 45/67 (67%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NP KG+GFI P   TE G DVF+H SAV  AGL +L EGQ + Y   Q+   GK
Sbjct: 4  GTVKWFNPTKGFGFIEP---TEGGGDVFVHISAVERAGLRSLNEGQKIEYQVAQD--RGK 58

Query: 65 YSAENLK 71
           SA +LK
Sbjct: 59 ASAVDLK 65


>gi|91205892|ref|YP_538247.1| cold shock-like protein [Rickettsia bellii RML369-C]
 gi|157826747|ref|YP_001495811.1| cold shock-like protein [Rickettsia bellii OSU 85-389]
 gi|91069436|gb|ABE05158.1| Cold shock-like protein [Rickettsia bellii RML369-C]
 gi|157802051|gb|ABV78774.1| Cold shock-like protein [Rickettsia bellii OSU 85-389]
          Length = 100

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP K +GFI  E     G DVF+HRSAV +AGL  L EGQ V +D    D NGK
Sbjct: 37 GKVKWFNPTKNFGFIEQE---NGGKDVFVHRSAVDAAGLAGLNEGQDVIFDL--EDKNGK 91

Query: 65 YSAENLKL 72
           SA NL++
Sbjct: 92 ISAVNLRI 99


>gi|114569736|ref|YP_756416.1| cold-shock DNA-binding protein family protein [Maricaulis maris
          MCS10]
 gi|114340198|gb|ABI65478.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10]
          Length = 69

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 5/70 (7%)

Query: 5  GSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G++K++N  KG+GFI PE GST    DVF+H SAV  +G+  +TEGQ ++++ VQ+  +G
Sbjct: 4  GTVKFFNTTKGFGFIQPEDGST----DVFVHISAVERSGMTTITEGQKLSFEVVQDKRSG 59

Query: 64 KYSAENLKLV 73
          K +AENL+ V
Sbjct: 60 KNAAENLQAV 69


>gi|134034058|sp|Q1RHK6|CSPA_RICBR RecName: Full=Cold shock-like protein CspA
          Length = 70

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP K +GFI  E     G DVF+HRSAV +AGL  L EGQ V +D    D NGK
Sbjct: 7  GKVKWFNPTKNFGFIEQE---NGGKDVFVHRSAVDAAGLAGLNEGQDVIFDL--EDKNGK 61

Query: 65 YSAENLKL 72
           SA NL++
Sbjct: 62 ISAVNLRI 69


>gi|144899530|emb|CAM76394.1| Cold-shock protein, DNA-binding [Magnetospirillum gryphiswaldense
          MSR-1]
          Length = 70

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   +  +D F+H SAV  +G+ +L EGQ + Y+ V +  +GK
Sbjct: 4  GTVKWFNAQKGFGFIAPD---DGSNDAFVHISAVERSGIGDLREGQKIGYELVADRRSGK 60

Query: 65 YSAENLKLV 73
           SA+NLKLV
Sbjct: 61 MSADNLKLV 69


>gi|154245503|ref|YP_001416461.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
          autotrophicus Py2]
 gi|154159588|gb|ABS66804.1| putative cold-shock DNA-binding domain protein [Xanthobacter
          autotrophicus Py2]
          Length = 70

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+     G D F+H SAV  AG+ +L EGQ V ++ V +  +GK
Sbjct: 4  GTVKWFNAQKGFGFITPD---SGGSDAFVHISAVERAGMSDLREGQKVAFELVTDRKSGK 60

Query: 65 YSAENLK 71
           SA+ LK
Sbjct: 61 LSADQLK 67


>gi|75676560|ref|YP_318981.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
 gi|74421430|gb|ABA05629.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
          Nb-255]
          Length = 69

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P    + G+DVF+H SAV  AGL  L EGQ V ++   +   GK
Sbjct: 4  GTVKWFNGQKGFGFIQP---NDGGNDVFVHISAVERAGLSGLNEGQQVNFELKTDKMRGK 60

Query: 65 YSAENLKL 72
           SAENL L
Sbjct: 61 VSAENLSL 68


>gi|92118260|ref|YP_577989.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91801154|gb|ABE63529.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 69

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P    + G DVF+H SAV  AGL  L EGQ V ++   +   GK
Sbjct: 4  GTVKWFNGQKGFGFIQP---NDGGSDVFVHISAVERAGLTGLAEGQKVNFELKTDKMRGK 60

Query: 65 YSAENLKL 72
           SAENL L
Sbjct: 61 VSAENLSL 68


>gi|319408889|emb|CBI82546.1| cold shock protein [Bartonella schoenbuchensis R1]
          Length = 70

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KG+GFI P    +   DVF+H SAV  +GL NL EGQ ++Y+ VQ+ 
Sbjct: 1  MSSTGTVKWFNTTKGFGFIQPN---DGSADVFVHISAVERSGLSNLNEGQKISYEVVQDR 57

Query: 61 ANGKYSAENLKLV 73
           +GK +A NL ++
Sbjct: 58 RSGKLAAGNLAVL 70


>gi|261222631|ref|ZP_05936912.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          B1/94]
 gi|261318104|ref|ZP_05957301.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis B2/94]
 gi|261758673|ref|ZP_06002382.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          F5/99]
 gi|265984538|ref|ZP_06097273.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          83/13]
 gi|265999381|ref|ZP_05466081.2| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 2 str. 63/9]
 gi|260921215|gb|EEX87868.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          B1/94]
 gi|261297327|gb|EEY00824.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis B2/94]
 gi|261738657|gb|EEY26653.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          F5/99]
 gi|263093577|gb|EEZ17602.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 2 str. 63/9]
 gi|264663130|gb|EEZ33391.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          83/13]
          Length = 64

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 3/64 (4%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+ S
Sbjct: 1  MKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGRSS 57

Query: 67 AENL 70
          A+NL
Sbjct: 58 ADNL 61


>gi|167647685|ref|YP_001685348.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
          K31]
 gi|167350115|gb|ABZ72850.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
          Length = 179

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP KG+GFI PE   + G DVF+H +AV  +GL  L EG  VTY+  ++  +GK
Sbjct: 4  GVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVTYEMEEDRRSGK 60

Query: 65 YSAENLKLV 73
           SA NL++ 
Sbjct: 61 TSAGNLRVT 69



 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GFI P+     G D+F+H SAV  AGL  L EGQ V Y+  Q+  +GK S
Sbjct: 116 VKWFNSTKGFGFIQPD---NGGGDIFVHISAVERAGLRGLNEGQQVGYELEQDRRSGKTS 172

Query: 67  AENLKLV 73
           A NL+++
Sbjct: 173 AGNLRIL 179


>gi|146295937|ref|YP_001179708.1| cold-shock DNA-binding domain-containing protein
          [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409513|gb|ABP66517.1| cold-shock DNA-binding protein family [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 66

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +KW+NP+KGYGFI    STE+GDDVF+H SA+   G   L EGQ+V +D V+++
Sbjct: 2  RGRVKWFNPEKGYGFI----STENGDDVFVHFSAINMEGYKTLAEGQMVEFDVVKSE 54


>gi|260884227|ref|ZP_05895841.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 9 str. C68]
 gi|260873755|gb|EEX80824.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 9 str. C68]
          Length = 64

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 3/64 (4%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+ S
Sbjct: 1  MKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGRSS 57

Query: 67 AENL 70
          A+NL
Sbjct: 58 ADNL 61


>gi|116251065|ref|YP_766903.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|209548412|ref|YP_002280329.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|241203661|ref|YP_002974757.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|115255713|emb|CAK06794.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|209534168|gb|ACI54103.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|240857551|gb|ACS55218.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 69

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ G +KW+N  KG+GFI P+ GST    DVF+H SAV  AG+  L EGQ + YD V++ 
Sbjct: 1  MNSGVVKWFNGTKGFGFIQPDDGST----DVFVHISAVERAGMRELVEGQKIRYDLVRDK 56

Query: 61 ANGKYSAENLK 71
           +GK SA+NL+
Sbjct: 57 KSGKNSADNLQ 67


>gi|77462572|ref|YP_352076.1| cold-shock DNA-binding protein family protein [Rhodobacter
          sphaeroides 2.4.1]
 gi|126461506|ref|YP_001042620.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|221638430|ref|YP_002524692.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          KD131]
 gi|332557457|ref|ZP_08411779.1| cold shock protein [Rhodobacter sphaeroides WS8N]
 gi|77386990|gb|ABA78175.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          2.4.1]
 gi|126103170|gb|ABN75848.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17029]
 gi|221159211|gb|ACM00191.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          KD131]
 gi|332275169|gb|EGJ20484.1| cold shock protein [Rhodobacter sphaeroides WS8N]
          Length = 68

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P G ++   DVF+H SA+  AG+  L +GQ VT+D ++ D NG+
Sbjct: 4  GTVKWFNATKGFGFIAPAGGSK---DVFVHISALERAGIRQLNDGQAVTFD-LETDRNGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESATNLAL 67


>gi|304321935|ref|YP_003855578.1| Cold-shock DNA-binding domain protein [Parvularcula bermudensis
          HTCC2503]
 gi|303300837|gb|ADM10436.1| Cold-shock DNA-binding domain protein [Parvularcula bermudensis
          HTCC2503]
          Length = 69

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI P+   E G DVF+H SAV  AGL  L + Q V+Y+ VQ D  G+
Sbjct: 4  GTVKWFNAEKGFGFIKPD---EGGQDVFVHISAVQEAGLKGLDDNQRVSYEMVQ-DRRGR 59

Query: 65 YSAENLKLV 73
           SA  LKL+
Sbjct: 60 SSAGELKLM 68


>gi|119385862|ref|YP_916917.1| cold-shock DNA-binding domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119376457|gb|ABL71221.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
          PD1222]
          Length = 68

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI PE  ++   DVF+H SA+  AG+ +L +GQ + YD ++ D NG+
Sbjct: 4  GTVKWFNSNKGFGFIAPETGSK---DVFIHISALERAGIHHLNDGQAIAYD-IERDRNGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESATNLVL 67


>gi|92118346|ref|YP_578075.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91801240|gb|ABE63615.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 73

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+N  KG+GFI P+     G DVF+H SAV  AGL +L EG  V+Y+ V N  
Sbjct: 7  VATGTVKWFNATKGFGFIQPD---SGGKDVFVHISAVERAGLSSLNEGAKVSYEVVAN-- 61

Query: 62 NGKYSAENLKL 72
           GK SAENL++
Sbjct: 62 RGKESAENLRV 72


>gi|227818999|ref|YP_002822970.1| cold shock protein Y4CH [Sinorhizobium fredii NGR234]
 gi|227337998|gb|ACP22217.1| probable cold shock protein Y4CH [Sinorhizobium fredii NGR234]
          Length = 69

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   +   DVF+H SAV  AGL  L EGQ V+++  Q+  +GK
Sbjct: 4  GTVKWFNSTKGFGFIAPD---DGSPDVFVHISAVERAGLSTLKEGQKVSFEATQDRRSGK 60

Query: 65 YSAENLKLV 73
           SA+NL+ +
Sbjct: 61 TSADNLRAL 69


>gi|218681656|ref|ZP_03529457.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894]
          Length = 69

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N  KG+GFI P+ GST    DVF+H SAV  AG+  L EGQ + YD V++  +G
Sbjct: 4  GVVKWFNGTKGFGFIQPDDGST----DVFVHISAVERAGMRELVEGQKIRYDLVRDKRSG 59

Query: 64 KYSAENLK 71
          K SA+NL+
Sbjct: 60 KNSADNLQ 67


>gi|170751748|ref|YP_001758008.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium radiotolerans JCM 2831]
 gi|170658270|gb|ACB27325.1| cold-shock DNA-binding domain protein [Methylobacterium
          radiotolerans JCM 2831]
          Length = 69

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KGYGFI P+   + G DVF+H SAV  AG+ NL EGQ + Y+ + +  
Sbjct: 1  MNTGTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGMRNLIEGQRIAYEILTDKR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKDAAGNLQ 67


>gi|68164476|gb|AAY87205.1| predicted cold shock family protein [uncultured bacterium
          BAC17H8]
          Length = 83

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 4/70 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI P+   E G+DVF+H +AV ++GL  L EGQ V+Y+  +   NG
Sbjct: 17 QGTVKWFNTQKGYGFINPD---EDGNDVFVHITAVQNSGLTGLNEGQRVSYELAEQ-RNG 72

Query: 64 KYSAENLKLV 73
          +++A +L +V
Sbjct: 73 RFAAVDLSIV 82


>gi|319405285|emb|CBI78899.1| cold shock protein [Bartonella sp. AR 15-3]
          Length = 69

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 49/67 (73%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N +KG+GFI P +GS     DVF+H SA+  +GL +L EGQ ++YD +Q+  +G
Sbjct: 4  GTVKWFNTNKGFGFIQPNDGSA----DVFVHISALERSGLHDLNEGQKISYDILQDRRSG 59

Query: 64 KYSAENL 70
          K+SA NL
Sbjct: 60 KFSAGNL 66


>gi|154251388|ref|YP_001412212.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
          lavamentivorans DS-1]
 gi|154155338|gb|ABS62555.1| putative cold-shock DNA-binding domain protein [Parvibaculum
          lavamentivorans DS-1]
          Length = 68

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KGYGFI P    + G D+F+H SAV  AG  +L EGQ + Y+ V+   NG+
Sbjct: 4  GVVKWFNATKGYGFIAP---ADGGKDIFVHISAVERAGQKSLQEGQQIQYELVEGR-NGR 59

Query: 65 YSAENLKL 72
          +SAENL L
Sbjct: 60 FSAENLVL 67


>gi|323136343|ref|ZP_08071425.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
 gi|322398417|gb|EFY00937.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
          Length = 70

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI P+     G DVF+H SA+  AGL  L EGQ V Y+ V +  +GK
Sbjct: 4  GVVKWFNANKGFGFIQPD---AGGADVFVHISALERAGLHGLAEGQKVGYELVVDKRSGK 60

Query: 65 YSAENLKL 72
          +SA+ L+L
Sbjct: 61 FSADALQL 68


>gi|170743586|ref|YP_001772241.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium sp. 4-46]
 gi|168197860|gb|ACA19807.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
          Length = 69

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+   +  
Sbjct: 1  MNTGTVKWFNDQKGYGFIQPD---DGGKDVFVHISAVERAGLRGLAEGQKVSYELQTDKR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKVAAANLQ 67


>gi|146280323|ref|YP_001170479.1| hypothetical protein Rsph17025_4329 [Rhodobacter sphaeroides ATCC
          17025]
 gi|145558564|gb|ABP73174.1| hypothetical protein Rsph17025_4329 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 68

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P G ++   DVF+H SA+  AG+  L +GQ VT+D ++ D NG+
Sbjct: 4  GTVKWFNTTKGFGFIAPAGGSK---DVFVHISALERAGIRQLDDGQAVTFD-LERDRNGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESATNLAL 67


>gi|85715497|ref|ZP_01046478.1| cold shock protein [Nitrobacter sp. Nb-311A]
 gi|85697692|gb|EAQ35568.1| cold shock protein [Nitrobacter sp. Nb-311A]
          Length = 70

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+N  KGYGFI P+     G DVF+H SAV  AGL +L EG  ++Y+ V N  
Sbjct: 4  VATGTVKWFNGQKGYGFIQPD---SGGKDVFVHISAVERAGLNSLNEGDKISYEVVAN-- 58

Query: 62 NGKYSAENLKL 72
           GK SAENL++
Sbjct: 59 RGKESAENLRV 69


>gi|118589767|ref|ZP_01547172.1| ATP/GTP-binding site motif A (P-loop) protein [Stappia aggregata
          IAM 12614]
 gi|118437853|gb|EAV44489.1| ATP/GTP-binding site motif A (P-loop) protein [Stappia aggregata
          IAM 12614]
          Length = 69

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFI PE   +   DVF+H SAV  AG+ +L EGQ V+++ VQ+  +GK
Sbjct: 4  GTVKFFNTTKGFGFIQPE---DGASDVFVHISAVERAGMRSLVEGQKVSFEVVQDRRSGK 60

Query: 65 YSAENLKLV 73
           +A+NL+ V
Sbjct: 61 SAADNLQEV 69


>gi|260463314|ref|ZP_05811515.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|259030904|gb|EEW32179.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
          Length = 69

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 47/67 (70%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+  +    DVF+H SAV  AG+ ++ EGQ V Y+ V+++ +GK
Sbjct: 4  GTVKWFNATKGFGFIQPDDGSA---DVFVHISAVERAGMRDIVEGQKVGYEMVRDNKSGK 60

Query: 65 YSAENLK 71
           SA+ LK
Sbjct: 61 MSADQLK 67


>gi|220921802|ref|YP_002497103.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium nodulans ORS 2060]
 gi|219946408|gb|ACL56800.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
          ORS 2060]
          Length = 69

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L EGQ ++Y+   +  
Sbjct: 1  MNTGTVKWFNDQKGYGFIQPD---DGGKDVFVHISAVERAGLRGLVEGQKISYELQTDKR 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKVSAGNLQ 67


>gi|46202348|ref|ZP_00053353.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 91

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KGYGFI P+     G DVF+H SAV  AGL  L +GQ V++D  ++   GK
Sbjct: 26 GSVKWFNSTKGYGFIAPD---NGGADVFVHISAVERAGLSGLNDGQKVSFDEERDPKKGK 82

Query: 65 YSAENLKL 72
           SA NLK+
Sbjct: 83 TSAVNLKV 90


>gi|315499666|ref|YP_004088469.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
 gi|315417678|gb|ADU14318.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
          Length = 67

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 51/69 (73%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   E G DVF+H SAV SAGL +L++GQ V+Y+ VQ D  G+
Sbjct: 4  GTVKWFNSIKGFGFIQPD---EGGIDVFVHASAVESAGLRSLSDGQKVSYE-VQLD-RGR 58

Query: 65 YSAENLKLV 73
           SA NL+++
Sbjct: 59 SSASNLQII 67


>gi|163792428|ref|ZP_02186405.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
          BAL199]
 gi|159182133|gb|EDP66642.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
          BAL199]
          Length = 68

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE   +   DVF+H SAV  AG+ +L EGQ V++D V+   NGK
Sbjct: 4  GTVKWFNATKGYGFIEPE---DGSADVFVHISAVERAGIASLNEGQKVSFD-VERGRNGK 59

Query: 65 YSAENLK 71
          Y+A +L+
Sbjct: 60 YAATDLR 66


>gi|323137446|ref|ZP_08072524.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
 gi|322397433|gb|EFX99956.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
          Length = 69

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 47/67 (70%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AG+ +L+EGQ ++YD + +  +GK
Sbjct: 4  GTVKWFNSQKGFGFIQPD---DGGKDVFVHISAVEQAGMRDLSEGQKLSYDIIDDRRSGK 60

Query: 65 YSAENLK 71
           SA  L+
Sbjct: 61 ASAGKLQ 67


>gi|148557537|ref|YP_001265119.1| cold-shock DNA-binding protein family protein [Sphingomonas
          wittichii RW1]
 gi|148502727|gb|ABQ70981.1| cold-shock DNA-binding protein family [Sphingomonas wittichii
          RW1]
          Length = 68

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKGYGFI PE   E GDD F+H SAV  AG+  L + Q ++Y+ V+ D  GK
Sbjct: 4  GTVKFFNADKGYGFIAPE---EGGDDSFVHISAVERAGMATLNKDQRISYE-VETDRRGK 59

Query: 65 YSAENLKLV 73
           SA NL+ V
Sbjct: 60 SSAVNLQAV 68


>gi|302381609|ref|YP_003817432.1| cold-shock DNA-binding domain protein [Brevundimonas
          subvibrioides ATCC 15264]
 gi|302192237|gb|ADK99808.1| cold-shock DNA-binding domain protein [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 70

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KWYN  KGYGFI P   ++ G DVF+H SAV  AG+  L EGQ V+Y+  ++   GK
Sbjct: 4  GTVKWYNSTKGYGFIEP---SDGGKDVFVHVSAVEGAGMNGLNEGQKVSYEVEKDRRTGK 60

Query: 65 YSAENLK 71
           SA  LK
Sbjct: 61 ESAGQLK 67


>gi|99081593|ref|YP_613747.1| cold-shock DNA-binding protein family protein [Ruegeria sp.
          TM1040]
 gi|99037873|gb|ABF64485.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040]
          Length = 68

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE  T+   DVFLH SAV  AG+  + +GQ VT+D ++N  +G+
Sbjct: 4  GTVKWFNATKGFGFIQPEDGTQ---DVFLHISAVERAGINRIDDGQKVTFD-LENGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 TSASNLAL 67


>gi|163853561|ref|YP_001641604.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218532421|ref|YP_002423237.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240140980|ref|YP_002965460.1| DNA-binding transcriptional repressor [Methylobacterium
          extorquens AM1]
 gi|254563491|ref|YP_003070586.1| DNA-binding transcriptional repressor [Methylobacterium
          extorquens DM4]
 gi|163665166|gb|ABY32533.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218524724|gb|ACK85309.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240010957|gb|ACS42183.1| DNA-binding transcriptional repressor [Methylobacterium
          extorquens AM1]
 gi|254270769|emb|CAX26774.1| DNA-binding transcriptional repressor [Methylobacterium
          extorquens DM4]
          Length = 69

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE  ++   DVF+H SAV  AGL  LTEGQ V+Y+   +  +GK
Sbjct: 4  GTVKWFNEQKGFGFIQPEDGSK---DVFVHISAVERAGLRGLTEGQKVSYEMETDRRSGK 60

Query: 65 YSAENLKL 72
           SA  L++
Sbjct: 61 QSAGQLQV 68


>gi|154253600|ref|YP_001414424.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
          lavamentivorans DS-1]
 gi|154157550|gb|ABS64767.1| putative cold-shock DNA-binding domain protein [Parvibaculum
          lavamentivorans DS-1]
          Length = 69

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G  +   DVF+H SAV  AG+ +L EGQ + YD   +  +GK
Sbjct: 4  GTVKWFNSQKGFGFIQPDGGDK---DVFVHISAVERAGMSSLNEGQKIGYDLETDQRSGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 VSAANLR 67


>gi|254418731|ref|ZP_05032455.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
          BAL3]
 gi|196184908|gb|EDX79884.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
          BAL3]
          Length = 70

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NP KGYGFI P+   + G DVF+H SAV  AGL  L E Q V+Y+  ++  +GK
Sbjct: 4  GTVKWFNPTKGYGFIQPD---DGGKDVFVHISAVEGAGLRGLDENQKVSYELERDKRSGK 60

Query: 65 YSAENLKLV 73
           SA  L+ +
Sbjct: 61 ESAGQLQTI 69


>gi|329114551|ref|ZP_08243310.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
 gi|326696031|gb|EGE47713.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
          Length = 82

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KGYGFI P+   + G DVF+H +AV +AGL  L +GQ V++D V+  
Sbjct: 15 LMPTGTVKWFNATKGYGFIAPD---DGGKDVFVHITAVQAAGLRGLNDGQKVSFDLVEE- 70

Query: 61 ANGKYSAENLKL 72
            GK +A NLK+
Sbjct: 71 -RGKQAATNLKV 81


>gi|92117563|ref|YP_577292.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91800457|gb|ABE62832.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 67

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G DVF+H SAV  AGL +L EG  V+Y+ V N   GK
Sbjct: 4  GTVKWFNATKGFGFIQPD---SGGKDVFVHISAVERAGLSSLNEGAKVSYEEVAN--KGK 58

Query: 65 YSAENLKL 72
           SAENL++
Sbjct: 59 TSAENLRV 66


>gi|240850168|ref|YP_002971561.1| cold shock protein [Bartonella grahamii as4aup]
 gi|240267291|gb|ACS50879.1| cold shock protein [Bartonella grahamii as4aup]
          Length = 69

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   ++   DVF+H SAV  +GL +L EGQ ++YD +Q+  +GK
Sbjct: 4  GTVKWFNTTKGFGFIQP---SDGSADVFVHISAVERSGLNSLNEGQKISYDVLQDRRSGK 60

Query: 65 YSAENL 70
          ++A NL
Sbjct: 61 FAAGNL 66


>gi|299892776|gb|ADJ57697.1| cold shock protein [Caulobacter crescentus NA1000]
          Length = 176

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +KW+N  KG+GFI P+     G DVF+H SAV  AGL  L EGQ V Y+  Q+  +GK
Sbjct: 111 GVVKWFNTTKGFGFIQPD---NGGGDVFVHISAVERAGLRGLNEGQQVGYELEQDRRSGK 167

Query: 65  YSAENLKLV 73
            SA NL+++
Sbjct: 168 TSAGNLRIL 176



 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP KG+GFI PE   + G DVF+H +AV  +GL  L EG  V Y+  ++  +GK
Sbjct: 4  GVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRRSGK 60

Query: 65 YSAENLKL 72
           SA  L++
Sbjct: 61 TSAGQLRV 68


>gi|295688501|ref|YP_003592194.1| cold-shock DNA-binding domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295430404|gb|ADG09576.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC
           21756]
          Length = 175

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +KW+N  KG+GFI P+     G DVF+H SAV  AGL  L EGQ V Y+  Q+  +GK
Sbjct: 110 GVVKWFNTTKGFGFIQPD---NGGGDVFVHISAVERAGLRGLNEGQQVGYELEQDRRSGK 166

Query: 65  YSAENLKLV 73
            SA NL+++
Sbjct: 167 TSAGNLRIL 175



 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP KG+GFI PE   + G DVF+H +AV  +GL  L EG  V Y+  ++  +GK
Sbjct: 4  GVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRRSGK 60

Query: 65 YSAENLKLV 73
           SA  L++ 
Sbjct: 61 TSAGQLRVT 69


>gi|148559048|ref|YP_001259374.1| cold-shock family protein [Brucella ovis ATCC 25840]
 gi|148370305|gb|ABQ60284.1| cold-shock family protein [Brucella ovis ATCC 25840]
          Length = 105

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 3/63 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+
Sbjct: 45  GTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 101

Query: 65  YSA 67
            SA
Sbjct: 102 SSA 104


>gi|86356213|ref|YP_468105.1| cold shock protein [Rhizobium etli CFN 42]
 gi|86280315|gb|ABC89378.1| cold shock protein [Rhizobium etli CFN 42]
          Length = 69

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ +L +GQ ++YD V+++ 
Sbjct: 1  MNTGTVKWFNATKGFGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYDLVRDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA+ L+
Sbjct: 58 SGKMSADRLQ 67


>gi|241202847|ref|YP_002973943.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240856737|gb|ACS54404.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 69

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     GDD F+H SAV  AG+  L EGQ + +D  +++ +GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---NGGDDAFVHISAVERAGMRELVEGQKIGFDLERDNKSGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 MSACNLQ 67


>gi|16126859|ref|NP_421423.1| cold-shock domain-contain protein [Caulobacter crescentus CB15]
 gi|221235641|ref|YP_002518078.1| cold shock protein [Caulobacter crescentus NA1000]
 gi|13424199|gb|AAK24591.1| cold-shock domain family protein [Caulobacter crescentus CB15]
 gi|220964814|gb|ACL96170.1| cold shock protein [Caulobacter crescentus NA1000]
          Length = 69

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP KG+GFI PE   + G DVF+H +AV  +GL  L EG  V Y+  ++  +GK
Sbjct: 4  GVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRRSGK 60

Query: 65 YSAENLKLV 73
           SA NL+++
Sbjct: 61 TSAGNLRIL 69


>gi|323139562|ref|ZP_08074607.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
 gi|322395181|gb|EFX97737.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
          Length = 69

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AG+ +L+EGQ ++YD + +  +GK
Sbjct: 4  GTVKWFNAQKGFGFIQPD---DGGKDVFVHISAVEQAGMRDLSEGQKLSYDVIDDRRSGK 60

Query: 65 YSAENL 70
           SA  L
Sbjct: 61 ASAGKL 66


>gi|15965864|ref|NP_386217.1| cold shock transcription regulator protein [Sinorhizobium
          meliloti 1021]
 gi|150397206|ref|YP_001327673.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|307309620|ref|ZP_07589273.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307321759|ref|ZP_07601147.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|15075133|emb|CAC46690.1| Probable cold shock transcription regulator [Sinorhizobium
          meliloti 1021]
 gi|150028721|gb|ABR60838.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
 gi|306892581|gb|EFN23379.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306899955|gb|EFN30577.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 69

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   +   DVF+H SAV  AGL  L +GQ V+++  Q+  +GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---DGAADVFVHISAVERAGLSTLKDGQKVSFELTQDRRSGK 60

Query: 65 YSAENLK 71
           SA+NL+
Sbjct: 61 TSADNLR 67


>gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
          HTCC2255]
 gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
          HTCC2255]
          Length = 531

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 3/71 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++ WYNP KG GFI P+   + GDDVF+H SA+ ++GL  + EG ++TY+ + ++  GK
Sbjct: 4  GTVIWYNPVKGLGFINPD---QGGDDVFVHMSALKASGLKVVKEGDMLTYELLLDEKTGK 60

Query: 65 YSAENLKLVPK 75
           +A N+ ++ K
Sbjct: 61 KAASNVTILKK 71


>gi|298290653|ref|YP_003692592.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296927164|gb|ADH87973.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 69

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+  +    DVF+H SAV  AGL  L EGQ V+Y+   +   GK
Sbjct: 4  GTVKWFNSQKGYGFIQPDAGS---SDVFVHISAVERAGLSTLNEGQKVSYEVEADRRTGK 60

Query: 65 YSAENLKLV 73
           SA NL+ +
Sbjct: 61 SSAANLRAL 69


>gi|148259024|ref|YP_001233151.1| cold-shock DNA-binding domain-containing protein [Acidiphilium
          cryptum JF-5]
 gi|326402151|ref|YP_004282232.1| hypothetical protein ACMV_00030 [Acidiphilium multivorum AIU301]
 gi|146400705|gb|ABQ29232.1| putative cold-shock DNA-binding domain protein [Acidiphilium
          cryptum JF-5]
 gi|325049012|dbj|BAJ79350.1| hypothetical protein ACMV_00030 [Acidiphilium multivorum AIU301]
          Length = 67

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H +AV +AG+  L EGQ ++Y+  Q    GK
Sbjct: 4  GTVKWFNTTKGFGFIVPQ---DGGKDVFVHITAVQAAGMRGLNEGQKISYEVTQE--RGK 58

Query: 65 YSAENLKLV 73
           +A NLK V
Sbjct: 59 AAATNLKAV 67


>gi|146280255|ref|YP_001170411.1| hypothetical protein Rsph17025_4258 [Rhodobacter sphaeroides ATCC
          17025]
 gi|145558496|gb|ABP73106.1| hypothetical protein Rsph17025_4258 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 68

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P G ++   DVF+H +A+  AG+  L +GQ VT+D ++ D NG+
Sbjct: 4  GTVKWFNATKGFGFIAPTGGSK---DVFVHVTALERAGIRQLNDGQTVTFD-LERDRNGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESATNLVL 67


>gi|220920871|ref|YP_002496172.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium nodulans ORS 2060]
 gi|219945477|gb|ACL55869.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
          ORS 2060]
          Length = 69

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  +GL  L+EGQ V+Y+   +  +GK
Sbjct: 4  GTVKWFNGQKGFGFIQPD---DGGKDVFVHISAVERSGLHTLSEGQKVSYELETDRRSGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 QSAGNLR 67


>gi|13475232|ref|NP_106796.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|14025983|dbj|BAB52582.1| cold shock protein [Mesorhizobium loti MAFF303099]
          Length = 70

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G DVF+H SAV  AGL  LT+GQ + Y+  Q+   GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---NGGQDVFVHISAVERAGLSTLTDGQKINYEVEQDRRTGK 60

Query: 65 YSAENL 70
           SA NL
Sbjct: 61 SSAGNL 66


>gi|307943089|ref|ZP_07658434.1| putative cold shock protein [Roseibium sp. TrichSKD4]
 gi|307773885|gb|EFO33101.1| putative cold shock protein [Roseibium sp. TrichSKD4]
          Length = 69

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KGYGFI PE  ++   DVF+H SAV  AG+  L+EGQ V+++ VQ+  +GK
Sbjct: 4  GTVKFFNTTKGYGFIQPEDGSQ---DVFVHISAVERAGMTTLSEGQKVSFEVVQDRRSGK 60

Query: 65 YSAENLKLV 73
           +A+ L  V
Sbjct: 61 SAADGLAAV 69


>gi|20803889|emb|CAD31467.1| PROBABLE TRANSCRIPTION REGULATOR COLD SHOCK PROTEIN
          [Mesorhizobium loti R7A]
          Length = 70

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL NL +GQ + Y+  Q+  +GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---DDGQDVFVHISAVERAGLSNLVDGQKIKYEIEQDRRSGK 60

Query: 65 YSAENLKLV 73
           SA +L  V
Sbjct: 61 SSAGSLSKV 69


>gi|258542856|ref|YP_003188289.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-01]
 gi|256633934|dbj|BAH99909.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-01]
 gi|256636993|dbj|BAI02962.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-03]
 gi|256640046|dbj|BAI06008.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-07]
 gi|256643102|dbj|BAI09057.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-22]
 gi|256646157|dbj|BAI12105.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-26]
 gi|256649210|dbj|BAI15151.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-32]
 gi|256652197|dbj|BAI18131.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655254|dbj|BAI21181.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-12]
          Length = 67

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H +AV +AGL  L +GQ V++D V+    GK
Sbjct: 4  GTVKWFNATKGYGFIAPD---DGGKDVFVHITAVQAAGLRGLNDGQKVSFDLVEE--RGK 58

Query: 65 YSAENLKL 72
           +A NLK+
Sbjct: 59 QAATNLKV 66


>gi|294678414|ref|YP_003579029.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003]
 gi|294477234|gb|ADE86622.1| cold shock protein CspA-3 [Rhodobacter capsulatus SB 1003]
          Length = 68

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE  T+   DVF+H +A+  AGL  L +GQ V++D ++ D NG+
Sbjct: 4  GTVKWFNAIKGFGFIAPESGTK---DVFVHVTALERAGLRGLNDGQAVSFD-LERDRNGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESATNLVL 67


>gi|163850615|ref|YP_001638658.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218529339|ref|YP_002420155.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240137664|ref|YP_002962135.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
          AM1]
 gi|254560234|ref|YP_003067329.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
          DM4]
 gi|163662220|gb|ABY29587.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218521642|gb|ACK82227.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240007632|gb|ACS38858.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
          AM1]
 gi|254267512|emb|CAX23354.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
          DM4]
          Length = 69

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+     G DVF+H SAV  AGL +L EGQ VTY+   +  +GK
Sbjct: 4  GTVKWFNETKGYGFIQPD---NGGKDVFVHISAVERAGLRDLAEGQKVTYEVEIDRKSGK 60

Query: 65 YSAENLKL 72
           SA  L++
Sbjct: 61 ESAGQLQV 68


>gi|170741171|ref|YP_001769826.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium sp. 4-46]
 gi|168195445|gb|ACA17392.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
          Length = 73

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G++KW+N  KG+GFI P+   + G DVF+H SAV  +GL  L+EGQ V+Y+   + 
Sbjct: 4  MMSTGTVKWFNGQKGFGFIQPD---DGGKDVFVHISAVERSGLQTLSEGQKVSYELETDR 60

Query: 61 ANGKYSAENLK 71
           +GK SA +L+
Sbjct: 61 RSGKQSAGSLR 71


>gi|319898519|ref|YP_004158612.1| cold shock protein [Bartonella clarridgeiae 73]
 gi|319402483|emb|CBI76026.1| cold shock protein [Bartonella clarridgeiae 73]
          Length = 69

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N  KG+GFI P +GS     DVF+H SAV  +GL +L EGQ ++YD +Q+  +G
Sbjct: 4  GTVKWFNTTKGFGFIQPNDGSA----DVFVHISAVERSGLNDLNEGQKISYDVLQDRRSG 59

Query: 64 KYSAENL 70
          K++A NL
Sbjct: 60 KFAAGNL 66


>gi|296444335|ref|ZP_06886300.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
 gi|296257982|gb|EFH05044.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
          Length = 70

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+     G DVF+H SAV  AGL  L EGQ ++Y+ V +  
Sbjct: 1  MQTGVVKWFNSQKGFGFIQPD---SGGADVFVHISAVERAGLRGLAEGQKISYETVIDKR 57

Query: 62 NGKYSAENLKL 72
          +GK SA+ L++
Sbjct: 58 SGKSSADQLQV 68


>gi|300021896|ref|YP_003754507.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299523717|gb|ADJ22186.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 68

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 46/67 (68%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE   E G+DVF+H SAV  AGL +L EGQ + ++  +   NGK
Sbjct: 4  GTVKWFNGQKGYGFIQPE---EGGNDVFVHISAVERAGLQSLREGQKIYFE-TERGRNGK 59

Query: 65 YSAENLK 71
           +A NL+
Sbjct: 60 IAAVNLR 66


>gi|218677799|ref|ZP_03525696.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894]
          Length = 69

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   +   DVF+H SAV  AG+ +L +GQ ++Y+ V+++ +GK
Sbjct: 4  GTVKWFNATKGYGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYELVRDNKSGK 60

Query: 65 YSAENLK 71
           SA+ L+
Sbjct: 61 MSADRLQ 67


>gi|259416628|ref|ZP_05740548.1| conserved domain protein [Silicibacter sp. TrichCH4B]
 gi|259348067|gb|EEW59844.1| conserved domain protein [Silicibacter sp. TrichCH4B]
          Length = 68

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE  T+   DVFLH SAV  AG+  + +GQ VTYD +++  +G+
Sbjct: 4  GTVKWFNSTKGFGFIQPEDGTQ---DVFLHVSAVERAGINRIDDGQKVTYD-LESGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 TSASNLAL 67


>gi|254294491|ref|YP_003060514.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
 gi|254043022|gb|ACT59817.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
          Length = 69

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H +AV  AGL  L EGQ V ++ V +   GK
Sbjct: 4  GTVKWFNATKGYGFIAPD---DGGADVFVHVTAVQQAGLAGLDEGQKVEFELVTDPKRGK 60

Query: 65 YSAENLK 71
           SA +LK
Sbjct: 61 TSAGDLK 67


>gi|254488402|ref|ZP_05101607.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
          GAI101]
 gi|214045271|gb|EEB85909.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
          GAI101]
          Length = 68

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 49/68 (72%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GF+ PEG ++   DVF+H SAV  AGL  L++ Q +T+D +++  +G+
Sbjct: 4  GTVKWFNSTKGFGFVAPEGGSK---DVFVHISAVEQAGLTGLSDDQKITFD-IESGRDGR 59

Query: 65 YSAENLKL 72
           SA N+KL
Sbjct: 60 ESATNIKL 67


>gi|254418771|ref|ZP_05032495.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
          BAL3]
 gi|196184948|gb|EDX79924.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
          BAL3]
          Length = 70

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KWYNP KGYGFI P+   + G DVF+H SAV ++ + +L EGQ ++Y+  ++  +GK
Sbjct: 4  GTVKWYNPTKGYGFIAPD---DGGKDVFVHASAVETSSVGSLNEGQKISYEIERDSRSGK 60

Query: 65 YSAENL 70
           SA  L
Sbjct: 61 ESAGRL 66


>gi|13476765|ref|NP_108334.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|319784316|ref|YP_004143792.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|14027526|dbj|BAB53795.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|317170204|gb|ADV13742.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 69

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+  +    DVF+H SAV  AG+ ++ EGQ + Y+ V+++ +GK
Sbjct: 4  GTVKWFNATKGFGFIQPDDGSA---DVFVHISAVERAGMRDIVEGQKLGYEMVRDNKSGK 60

Query: 65 YSAENLK 71
           SA+ LK
Sbjct: 61 MSADQLK 67


>gi|92115994|ref|YP_575723.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91798888|gb|ABE61263.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 73

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+N  KG+GFI P+     G DVF+H SAV  AGL +L EG  V+Y+ V N  
Sbjct: 7  VATGTVKWFNATKGFGFIQPD---SGGKDVFVHISAVERAGLSSLNEGAKVSYEVVAN-- 61

Query: 62 NGKYSAENLKL 72
           GK SAE+L++
Sbjct: 62 RGKESAEDLRV 72


>gi|83312382|ref|YP_422646.1| cold shock protein [Magnetospirillum magneticum AMB-1]
 gi|82947223|dbj|BAE52087.1| Cold shock protein [Magnetospirillum magneticum AMB-1]
          Length = 69

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KGYGFI P+     G DVF+H SAV  AGL  L +GQ V+++  ++   GK
Sbjct: 4  GSVKWFNSTKGYGFIAPD---NGGPDVFVHISAVERAGLSGLNDGQKVSFEEERDPRKGK 60

Query: 65 YSAENLKLV 73
           SA NLK++
Sbjct: 61 TSAVNLKVL 69


>gi|119384797|ref|YP_915853.1| cold-shock DNA-binding domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119374564|gb|ABL70157.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
          PD1222]
          Length = 68

 Score = 66.6 bits (161), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE  ++   D+F+H SAV  AG+  L +GQ V++D ++ D NG+
Sbjct: 4  GTVKWFNSAKGFGFIQPESGSK---DIFVHISAVERAGIHQLNDGQAVSFD-LERDRNGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 DSATNLVL 67


>gi|153011838|ref|YP_001373051.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
          anthropi ATCC 49188]
 gi|151563726|gb|ABS17222.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
          anthropi ATCC 49188]
          Length = 68

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKG+GFITPE     G DVF+H S +A AG+ +L EGQ V+Y+  Q+   GK
Sbjct: 4  GTVKFFNQDKGFGFITPE---SGGSDVFVHVSGLAQAGV-SLGEGQKVSYEIGQDRKTGK 59

Query: 65 YSAENLKLV 73
            AEN++ +
Sbjct: 60 AKAENVRPI 68


>gi|149915747|ref|ZP_01904272.1| cold shock protein CspA [Roseobacter sp. AzwK-3b]
 gi|149810329|gb|EDM70174.1| cold shock protein CspA [Roseobacter sp. AzwK-3b]
          Length = 68

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PEG    G DVF+H SAV  AGL  L + Q VT+D ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPEG---GGKDVFVHISAVERAGLTGLADNQKVTFD-IEAGRDGR 59

Query: 65 YSAENLKL 72
           SA N+ L
Sbjct: 60 ESAANIAL 67


>gi|85715217|ref|ZP_01046200.1| cold shock protein [Nitrobacter sp. Nb-311A]
 gi|85697863|gb|EAQ35737.1| cold shock protein [Nitrobacter sp. Nb-311A]
          Length = 62

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 5/66 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KGYGFI PE     G DVF+H SAV  AGL +L EG  V+Y+ V N  +GK S
Sbjct: 1  MKWFNGQKGYGFIEPE---SGGKDVFVHISAVERAGLGSLNEGDKVSYEVVTN--HGKES 55

Query: 67 AENLKL 72
          AENL++
Sbjct: 56 AENLRV 61


>gi|162147832|ref|YP_001602293.1| cold-shock DNA-binding domain-containing protein
          [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542453|ref|YP_002274682.1| cold-shock DNA-binding domain-containing protein
          [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786409|emb|CAP55991.1| putative cold-shock DNA-binding domain protein [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209530130|gb|ACI50067.1| cold-shock DNA-binding domain protein [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 67

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE   + G DVF+H +AV +AGL  L E Q V+YD V     GK
Sbjct: 4  GTVKWFNATKGFGFIMPE---DGGKDVFVHITAVQAAGLRGLNENQRVSYDVVTE--RGK 58

Query: 65 YSAENLK 71
           +A NLK
Sbjct: 59 AAASNLK 65


>gi|167648239|ref|YP_001685902.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
          K31]
 gi|167350669|gb|ABZ73404.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
          Length = 68

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ +TY+  +++ +GK
Sbjct: 4  GTVKWFNGTKGFGFIQPD---DGGADVFVHISAVERAGLRGLDEGQKITYELERDNRSGK 60

Query: 65 YSAENLK 71
           SA  L+
Sbjct: 61 MSAGQLQ 67


>gi|298292879|ref|YP_003694818.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296929390|gb|ADH90199.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 70

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G D F+H SAV  AG+ +L EGQ V ++ V +  +GK
Sbjct: 4  GTVKWFNSQKGFGFIAPD---DGGSDAFVHISAVERAGMSDLREGQKVDFELVADQRSGK 60

Query: 65 YSAENLK 71
           SA+ L+
Sbjct: 61 MSADKLQ 67


>gi|260574813|ref|ZP_05842815.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
 gi|259022818|gb|EEW26112.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
          Length = 68

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI PEG  +   DVF+H +A+  AG+ +L +GQ VT+D ++   
Sbjct: 1  MAKGTVKWFNATKGFGFIAPEGGKK---DVFVHITALERAGIRSLADGQAVTFD-IEAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESATNLAL 67


>gi|114328925|ref|YP_746082.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
 gi|114317099|gb|ABI63159.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
          Length = 100

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+H G++KW+NP KGYGFI P   +    DVF+H SAV  AGL +L EGQ + ++ ++  
Sbjct: 32 MLH-GTVKWFNPTKGYGFIAP---STGEKDVFVHISAVQRAGLRSLNEGQQLDFE-IEQQ 86

Query: 61 ANGKYSAENL 70
           NG+ +A NL
Sbjct: 87 QNGRAAAVNL 96


>gi|126731182|ref|ZP_01746990.1| cold shock family protein [Sagittula stellata E-37]
 gi|126708484|gb|EBA07542.1| cold shock family protein [Sagittula stellata E-37]
          Length = 68

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 4/70 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI P+   E G DVF+H SAV  +GL  L + Q V+Y+ +Q   +G
Sbjct: 3  KGTVKWFNTTKGYGFIQPD---EGGKDVFVHISAVERSGLTGLADNQKVSYE-LQTGRDG 58

Query: 64 KYSAENLKLV 73
          K SA NL+L+
Sbjct: 59 KQSAGNLELL 68


>gi|298291124|ref|YP_003693063.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296927635|gb|ADH88444.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 71

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+G+   G DVF+H SAV  +GL  L +G+ V+++   +  +GK
Sbjct: 6  GTVKWFNDQKGYGFIQPDGA---GKDVFVHISAVQRSGLQGLRDGEKVSFELQTDQRSGK 62

Query: 65 YSAENLKL 72
           SA NL++
Sbjct: 63 TSAVNLRV 70


>gi|85703785|ref|ZP_01034889.1| Cold-shock protein [Roseovarius sp. 217]
 gi|85672713|gb|EAQ27570.1| Cold-shock protein [Roseovarius sp. 217]
          Length = 114

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KGYGFI P+G    G DVF+H SAV  AGL  L + Q VT+D +++  +G+
Sbjct: 50  GTVKWFNATKGYGFIAPDG---GGKDVFVHISAVERAGLTGLADDQKVTFD-IESGRDGR 105

Query: 65  YSAENLKL 72
            SA N+ L
Sbjct: 106 ESASNISL 113


>gi|182679940|ref|YP_001834086.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
          indica subsp. indica ATCC 9039]
 gi|182635823|gb|ACB96597.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 69

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+  ++   DVF+H SAV  + L  L EGQ+V+Y+  ++  +GK
Sbjct: 4  GTVKWFNTTKGYGFIAPQDGSK---DVFVHISAVERSQLRELVEGQVVSYELQRDQRSGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 ESAVNLR 67


>gi|310815277|ref|YP_003963241.1| cold shock family protein [Ketogulonicigenium vulgare Y25]
 gi|308754012|gb|ADO41941.1| cold shock family protein [Ketogulonicigenium vulgare Y25]
          Length = 68

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PEG    G DVF+H SAV  AGL  L++ Q VT+D ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPEG---GGKDVFVHISAVEQAGLTGLSDDQKVTFDLIEG-RDGR 59

Query: 65 YSAENLK 71
            A NLK
Sbjct: 60 QMAGNLK 66


>gi|163851320|ref|YP_001639363.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|163662925|gb|ABY30292.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
          Length = 69

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE  ++   DVF+H SAV  AG+ NL EGQ V+Y+   +  +GK
Sbjct: 4  GTVKWFNDTKGFGFIQPEDGSK---DVFVHISAVERAGMRNLIEGQKVSYEMETDRRSGK 60

Query: 65 YSAENLK 71
           SA +L+
Sbjct: 61 QSAGSLQ 67


>gi|241896392|ref|ZP_04783688.1| CspA family cold shock transcriptional regulator [Weissella
          paramesenteroides ATCC 33313]
 gi|241870372|gb|EER74123.1| CspA family cold shock transcriptional regulator [Weissella
          paramesenteroides ATCC 33313]
          Length = 75

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKGYGFI    S ESGDDVF+H SA+ + G  +L EGQ V+++  Q D
Sbjct: 10 MEQGTVKWFNADKGYGFI----SRESGDDVFVHFSAIQTDGFKSLEEGQAVSFEVQQGD 64


>gi|114328842|ref|YP_745999.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
 gi|114317016|gb|ABI63076.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
          Length = 67

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H +AV +AGL  L EGQ VTY+       GK
Sbjct: 4  GTVKWFNATKGFGFIMPQ---DGGKDVFVHITAVQAAGLRGLDEGQKVTYEVAME--RGK 58

Query: 65 YSAENLKL 72
           +A NL++
Sbjct: 59 AAATNLRV 66


>gi|170751403|ref|YP_001757663.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium radiotolerans JCM 2831]
 gi|170657925|gb|ACB26980.1| cold-shock DNA-binding domain protein [Methylobacterium
          radiotolerans JCM 2831]
          Length = 69

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+   +  +GK
Sbjct: 4  GTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGLRGLNEGQKVSYELETDRRSGK 60

Query: 65 YSAENLK 71
           SA  L+
Sbjct: 61 QSAGQLQ 67


>gi|116250366|ref|YP_766204.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|209547826|ref|YP_002279743.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|218658368|ref|ZP_03514298.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771]
 gi|241203000|ref|YP_002974096.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|115255014|emb|CAK06088.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|209533582|gb|ACI53517.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|240856890|gb|ACS54557.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 69

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ +L +GQ ++Y+ V+++ +GK
Sbjct: 4  GTVKWFNATKGFGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYELVRDNKSGK 60

Query: 65 YSAENLK 71
           SA+ L+
Sbjct: 61 MSADRLQ 67


>gi|46201253|ref|ZP_00055476.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
 gi|83310692|ref|YP_420956.1| cold shock protein [Magnetospirillum magneticum AMB-1]
 gi|82945533|dbj|BAE50397.1| Cold shock protein [Magnetospirillum magneticum AMB-1]
          Length = 69

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE   +   D+F+H SAV  AG+ NL EGQ ++++  ++   GK
Sbjct: 4  GTVKWFNATKGYGFIQPE---DGSADIFVHISAVERAGIGNLKEGQKLSFETERDPRKGK 60

Query: 65 YSAENLKLV 73
           SA NLK +
Sbjct: 61 SSAVNLKAL 69


>gi|303233128|ref|ZP_07319801.1| cold shock protein CspA [Atopobium vaginae PB189-T1-4]
 gi|302480713|gb|EFL43800.1| cold shock protein CspA [Atopobium vaginae PB189-T1-4]
          Length = 67

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+NPDKGYGFI    S E GDD+F+H S +   G   L EGQ V +D V    NG
Sbjct: 3  QGTVKWFNPDKGYGFI----SREDGDDLFVHFSEIQMDGFKTLEEGQAVEFD-VTTGQNG 57

Query: 64 KYSAENLK 71
          K  A N++
Sbjct: 58 KLQASNVR 65


>gi|332560384|ref|ZP_08414706.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N]
 gi|332278096|gb|EGJ23411.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N]
          Length = 68

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P G ++   DVF+H +A+  AG+  L +GQ V++D ++ D NG+
Sbjct: 4  GTVKWFNATKGFGFIAPAGGSK---DVFIHVTALERAGIRQLDDGQAVSFD-LERDRNGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESATNLVL 67


>gi|114326681|ref|YP_743838.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
 gi|114314855|gb|ABI60915.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
          Length = 83

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 4/73 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KGYGFI P+G    G DVF+H SAV  AGL  L +GQ +++D ++  
Sbjct: 15 LMPTGTVKWFNATKGYGFIHPDG---GGADVFVHISAVEKAGLSKLDDGQKLSFD-LEAG 70

Query: 61 ANGKYSAENLKLV 73
            GK SA NLKL 
Sbjct: 71 RQGKTSAVNLKLA 83


>gi|23012538|ref|ZP_00052598.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 69

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFI P+     G DVF+H SAV  AGL  L +GQ V+++  ++   GK
Sbjct: 4  GSVKWFNSTKGFGFIAPD---NGGPDVFVHISAVERAGLSGLNDGQKVSFEEERDPRKGK 60

Query: 65 YSAENLKLV 73
           SA NLK++
Sbjct: 61 TSAVNLKVL 69


>gi|254502104|ref|ZP_05114255.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
 gi|222438175|gb|EEE44854.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
          Length = 69

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KGYGFI PE   +  +DVF+H SAV  AGL  L EG  V+++ VQ+  +GK
Sbjct: 4  GTVKFFNSTKGYGFIQPE---DGSNDVFVHISAVERAGLATLNEGDKVSFEVVQDRRSGK 60

Query: 65 YSAENL 70
           +A+NL
Sbjct: 61 SAADNL 66


>gi|158423022|ref|YP_001524314.1| cold shock protein [Azorhizobium caulinodans ORS 571]
 gi|158329911|dbj|BAF87396.1| cold shock protein [Azorhizobium caulinodans ORS 571]
          Length = 69

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G DVF+H SAV  AG+  L EGQ + ++ ++++ +GK
Sbjct: 4  GTVKWFNATKGFGFIQPD---NGGSDVFVHISAVERAGMQGLAEGQKLQFEIIRDNKSGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 NSAGNLQ 67


>gi|110635634|ref|YP_675842.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
          BNC1]
 gi|110286618|gb|ABG64677.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
          Length = 69

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFI P+   +   DVF+H SAV  AG+  + EGQ +++D V+++ +GK
Sbjct: 4  GTVKFFNATKGFGFIQPD---DGAADVFVHISAVERAGMRTIVEGQKLSFDVVRDNRSGK 60

Query: 65 YSAENLK 71
           +AENL+
Sbjct: 61 SAAENLQ 67


>gi|221369644|ref|YP_002520740.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131]
 gi|221162696|gb|ACM03667.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131]
          Length = 77

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P G ++   DVF+H +A+  AG+  L +GQ V++D ++ D NG+
Sbjct: 13 GTVKWFNATKGFGFIAPAGGSK---DVFVHVTALERAGIRQLDDGQAVSFD-LERDRNGR 68

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 69 ESATNLVL 76


>gi|190890260|ref|YP_001976802.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|218509122|ref|ZP_03507000.1| cold shock protein [Rhizobium etli Brasil 5]
 gi|218513064|ref|ZP_03509904.1| cold shock protein [Rhizobium etli 8C-3]
 gi|218672806|ref|ZP_03522475.1| cold shock protein [Rhizobium etli GR56]
 gi|190695539|gb|ACE89624.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|327190777|gb|EGE57846.1| cold shock protein [Rhizobium etli CNPAF512]
          Length = 69

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ +L +GQ ++Y+ V+++ 
Sbjct: 1  MNTGTVKWFNATKGFGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYELVRDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA+ L+
Sbjct: 58 SGKMSADRLQ 67


>gi|188583863|ref|YP_001927308.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
 gi|179347361|gb|ACB82773.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
          Length = 69

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE  ++   DVF+H SAV  AGL  L EGQ V+Y+   +  +GK
Sbjct: 4  GTVKWFNEQKGFGFIQPEDGSK---DVFVHISAVERAGLRGLAEGQKVSYELETDRRSGK 60

Query: 65 YSAENLKL 72
           SA  L++
Sbjct: 61 QSAGQLQV 68


>gi|77465631|ref|YP_355134.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1]
 gi|77390049|gb|ABA81233.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1]
          Length = 77

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P G ++   DVF+H +A+  AG+  L +GQ V++D ++ D NG+
Sbjct: 13 GTVKWFNATKGFGFIAPTGGSK---DVFVHVTALERAGIRQLDDGQAVSFD-LERDRNGR 68

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 69 ESATNLVL 76


>gi|89071112|ref|ZP_01158315.1| cold shock family protein [Oceanicola granulosus HTCC2516]
 gi|89043360|gb|EAR49581.1| cold shock family protein [Oceanicola granulosus HTCC2516]
          Length = 68

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI PE     G DVF+H SAV  AGL  L + Q VTYD V+   +G
Sbjct: 3  KGTVKWFNSTKGFGFIAPE---TGGKDVFVHISAVERAGLTGLADDQKVTYD-VEAGRDG 58

Query: 64 KYSAENLKL 72
          + SA N++L
Sbjct: 59 RESAVNIQL 67


>gi|77462500|ref|YP_352004.1| cold-shock DNA-binding protein family protein [Rhodobacter
          sphaeroides 2.4.1]
 gi|77386918|gb|ABA78103.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          2.4.1]
          Length = 77

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P G ++   DVF+H +A+  AG+  L +GQ V++D ++ D NG+
Sbjct: 13 GTVKWFNATKGFGFIAPAGGSK---DVFVHVTALERAGIRQLDDGQAVSFD-LERDRNGR 68

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 69 ESATNLVL 76


>gi|146280285|ref|YP_001170441.1| hypothetical protein Rsph17025_4290 [Rhodobacter sphaeroides ATCC
          17025]
 gi|145558526|gb|ABP73136.1| hypothetical protein Rsph17025_4290 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 68

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   ++   DVF+H +A+  AG+  L +GQ VTYD ++ D NG+
Sbjct: 4  GTVKWFNATKGFGFIAPAHGSK---DVFVHVTALERAGIHQLNDGQAVTYD-METDRNGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESATNLVL 67


>gi|222147128|ref|YP_002548085.1| cold shock protein [Agrobacterium vitis S4]
 gi|221734118|gb|ACM35081.1| cold shock protein [Agrobacterium vitis S4]
          Length = 74

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H SAV  AG+  + EGQ + YD  +++ +GK
Sbjct: 9  GTVKWFNSTKGFGFIQPD---NGGPDAFVHISAVERAGMREIVEGQKIAYDMERDNKSGK 65

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 66 MSACNLQ 72


>gi|163851319|ref|YP_001639362.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|163662924|gb|ABY30291.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
          Length = 69

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+   +  +GK
Sbjct: 4  GTVKWFNGTKGYGFIQPD---DGGKDVFVHISAVERAGLRELAEGQKVSYEVEIDRRSGK 60

Query: 65 YSAENLKL 72
           SA  L++
Sbjct: 61 ESAGQLQV 68


>gi|222086901|ref|YP_002545435.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221724349|gb|ACM27505.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 69

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 47/67 (70%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ +L +GQ ++Y+ V++  +GK
Sbjct: 4  GTVKWFNAAKGFGFIQPD---DGATDVFVHISAVERAGMSSLRDGQKISYELVKDKRSGK 60

Query: 65 YSAENLK 71
           SA+ L+
Sbjct: 61 MSADQLE 67


>gi|126461377|ref|YP_001042491.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|126103041|gb|ABN75719.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17029]
          Length = 68

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P G ++   DVF+H +A+  AG+  L +GQ V++D ++ D NG+
Sbjct: 4  GTVKWFNATKGFGFIAPAGGSK---DVFVHVTALERAGIRQLDDGQAVSFD-LERDRNGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESATNLVL 67


>gi|312115790|ref|YP_004013386.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
 gi|311220919|gb|ADP72287.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
          Length = 69

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N +KGYGFI P+  +    DVF+H SAV  AG+  + EGQ ++++ V++  +GK
Sbjct: 4  GTVKFFNVNKGYGFIQPDSGSA---DVFVHISAVERAGMRTIVEGQKLSFEIVRDARSGK 60

Query: 65 YSAENLK 71
           SAENL+
Sbjct: 61 SSAENLQ 67


>gi|110678559|ref|YP_681566.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
 gi|109454675|gb|ABG30880.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
          Length = 68

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G ++   DVF+H SAV  AGL  L + Q VT+D +++  +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERAGLTGLADNQKVTFD-IEDGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 QSATNLAL 67


>gi|110634259|ref|YP_674467.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
          BNC1]
 gi|110285243|gb|ABG63302.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
          Length = 69

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+       DVF+H SAV  AG+ +L EGQ + ++ V++  +GK
Sbjct: 4  GTVKWFNATKGFGFIQPDSGQP---DVFVHISAVEQAGMRSLVEGQKIDFEVVRDPKSGK 60

Query: 65 YSAENLKLV 73
           +A NL+ V
Sbjct: 61 SAAANLQAV 69


>gi|77464163|ref|YP_353667.1| cold-shock DNA-binding protein family protein [Rhodobacter
          sphaeroides 2.4.1]
 gi|126463006|ref|YP_001044120.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|146276547|ref|YP_001166706.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|221640032|ref|YP_002526294.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          KD131]
 gi|332559039|ref|ZP_08413361.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          WS8N]
 gi|77388581|gb|ABA79766.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          2.4.1]
 gi|126104670|gb|ABN77348.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17029]
 gi|145554788|gb|ABP69401.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17025]
 gi|221160813|gb|ACM01793.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          KD131]
 gi|332276751|gb|EGJ22066.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          WS8N]
          Length = 68

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI PEG  +   DVF+H +A+  AG+  L +GQ VT+D +++  +G
Sbjct: 3  KGTVKWFNATKGYGFIAPEGGKK---DVFVHITALERAGIRALNDGQAVTFD-IESGRDG 58

Query: 64 KYSAENLKL 72
          + SA N+ +
Sbjct: 59 RESATNISI 67


>gi|302335495|ref|YP_003800702.1| cold-shock DNA-binding protein family [Olsenella uli DSM 7084]
 gi|301319335|gb|ADK67822.1| cold-shock DNA-binding protein family [Olsenella uli DSM 7084]
          Length = 67

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+NPDKGYGFI    S E GDD+F+H S +   G   L EGQ V +D +    NG
Sbjct: 3  QGTVKWFNPDKGYGFI----SREDGDDLFVHYSEIQMDGFKTLDEGQAVEFD-ITTGQNG 57

Query: 64 KYSAENLK 71
          K  A N++
Sbjct: 58 KLQASNVR 65


>gi|308234392|ref|ZP_07665129.1| cold-shock DNA-binding protein family [Atopobium vaginae DSM
          15829]
 gi|328944208|ref|ZP_08241672.1| cold shock protein B [Atopobium vaginae DSM 15829]
 gi|327491127|gb|EGF22902.1| cold shock protein B [Atopobium vaginae DSM 15829]
          Length = 67

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+NPDKGYGFI    S E GDD+F+H S +   G   L EGQ V +D +    NG
Sbjct: 3  QGTVKWFNPDKGYGFI----SREDGDDLFVHFSEIKMDGFKTLDEGQAVEFD-ITTGQNG 57

Query: 64 KYSAENLK 71
          K  A N++
Sbjct: 58 KLQASNVR 65


>gi|83944376|ref|ZP_00956831.1| cold shock family protein [Sulfitobacter sp. EE-36]
 gi|83953418|ref|ZP_00962140.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
 gi|83842386|gb|EAP81554.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
 gi|83844920|gb|EAP82802.1| cold shock family protein [Sulfitobacter sp. EE-36]
          Length = 68

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+G    G D+F+H SAV  AGL  L + Q VT+D V+   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPDG---GGKDIFVHISAVERAGLTGLADNQKVTFD-VEAGRDGR 59

Query: 65 YSAENLKL 72
           SA N+ L
Sbjct: 60 ESAANIAL 67


>gi|259502488|ref|ZP_05745390.1| cold-shock domain family protein [Lactobacillus antri DSM 16041]
 gi|259169631|gb|EEW54126.1| cold-shock domain family protein [Lactobacillus antri DSM 16041]
          Length = 66

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 41/59 (69%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKGYGFI    S ESGDDVF+H SA+   G  +L EGQ VT+D  + D
Sbjct: 1  MEQGTVKWFNNDKGYGFI----SRESGDDVFVHFSAIQGEGFKSLDEGQKVTFDVEEGD 55


>gi|259418670|ref|ZP_05742587.1| conserved domain protein [Silicibacter sp. TrichCH4B]
 gi|259344892|gb|EEW56746.1| conserved domain protein [Silicibacter sp. TrichCH4B]
          Length = 68

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI  EG +   +DVF+H SAV  +GL  L +GQ VT++ +Q+  +G+
Sbjct: 4  GTVKWFNSTKGYGFIAVEGRS---NDVFVHISAVERSGLTGLADGQAVTFE-IQSGRDGR 59

Query: 65 YSAENLKL 72
           SA +L+L
Sbjct: 60 ESASDLQL 67


>gi|116250220|ref|YP_766058.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254868|emb|CAK05942.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
          Length = 69

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H SAV  AG+ +L EGQ + +D  +++ +GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRDLVEGQKIGFDLERDNKSGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 MSACNLQ 67


>gi|330992259|ref|ZP_08316207.1| putative cold shock protein y4cH [Gluconacetobacter sp. SXCC-1]
 gi|329760458|gb|EGG76954.1| putative cold shock protein y4cH [Gluconacetobacter sp. SXCC-1]
          Length = 68

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   +   D F+H SAV  AG   L EGQ VTYD ++   NGK
Sbjct: 4  GTVKWFNAQKGFGFIQPD---DGSADAFVHISAVEQAGQQTLNEGQAVTYD-LERGRNGK 59

Query: 65 YSAENLKL 72
           SA NLK+
Sbjct: 60 SSAVNLKI 67


>gi|332715811|ref|YP_004443277.1| cold shock protein cspA [Agrobacterium sp. H13-3]
 gi|325062496|gb|ADY66186.1| cold shock protein cspA [Agrobacterium sp. H13-3]
          Length = 74

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + +D  +++ +GK
Sbjct: 9  GTVKWFNSTKGFGFIQPD---NGGTDAFVHISAVERAGMRELVEGQKIGFDLERDNKSGK 65

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 66 MSACNLQ 72


>gi|188583612|ref|YP_001927057.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
 gi|179347110|gb|ACB82522.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
          Length = 69

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW++  KGYGFI P+     G DVF+H SAV  AGL  L EGQ VT+D   +  
Sbjct: 1  MNTGTVKWFDEIKGYGFIQPD---TGGKDVFVHISAVQQAGLRGLVEGQKVTFDVENDRR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKPAAVNLQ 67


>gi|46206172|ref|ZP_00047626.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 69

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE  ++   DVF+H SAV  AGL  LTEGQ V+Y    +  +GK
Sbjct: 4  GTVKWFNEQKGYGFIQPEDGSK---DVFVHISAVERAGLRGLTEGQKVSYVMETDRRSGK 60

Query: 65 YSAENLKL 72
           S   L++
Sbjct: 61 QSGGKLQV 68


>gi|150398072|ref|YP_001328539.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|150029587|gb|ABR61704.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
          Length = 68

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKG+GFITPE     G DVF+H SA+   G  +L+EGQ V+Y+  Q+   GK
Sbjct: 4  GTVKFFNGDKGFGFITPE---NGGTDVFVHVSALQEGG--SLSEGQRVSYEIGQDRKTGK 58

Query: 65 YSAENLKLV 73
            AEN++++
Sbjct: 59 SRAENVRVL 67


>gi|23009266|ref|ZP_00050379.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 69

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW++  KGYGFI P+     G DVF+H SAV  AGL  L EGQ VT+D   +  
Sbjct: 1  MNTGTVKWFDEIKGYGFIQPD---NGGKDVFVHISAVQQAGLRGLAEGQKVTFDIENDRR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKPAAVNLQ 67


>gi|85703999|ref|ZP_01035102.1| cold shock family protein [Roseovarius sp. 217]
 gi|85671319|gb|EAQ26177.1| cold shock family protein [Roseovarius sp. 217]
          Length = 68

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KWYN  KG+GFI P+     G DVF+H SA+  AGL  L + Q VT+D +++  +G+
Sbjct: 4  GTVKWYNSTKGFGFIAPD---NGGKDVFVHVSAIERAGLTGLADNQKVTFD-IESGRDGR 59

Query: 65 YSAENLKL 72
           SA NL+L
Sbjct: 60 ESASNLQL 67


>gi|329889214|ref|ZP_08267557.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
          ATCC 11568]
 gi|328844515|gb|EGF94079.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
          ATCC 11568]
          Length = 70

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L E Q V+Y+  ++  +GK
Sbjct: 4  GTVKWFNSTKGYGFIQPD---DGGKDVFVHISAVEQAGLRGLDENQKVSYEIERDRRSGK 60

Query: 65 YSAENLK 71
           SA  LK
Sbjct: 61 ESAGQLK 67


>gi|296536432|ref|ZP_06898531.1| cold shock protein [Roseomonas cervicalis ATCC 49957]
 gi|296263249|gb|EFH09775.1| cold shock protein [Roseomonas cervicalis ATCC 49957]
          Length = 81

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NP KG+GFI PE  ++   DVF+H S V  AGL  L EG+ V ++ +Q    GK
Sbjct: 17 GTVKWFNPTKGFGFIQPEDGSK---DVFVHISDVQRAGLQGLNEGERVEFE-LQRGREGK 72

Query: 65 YSAENLKLV 73
           SA NLK V
Sbjct: 73 VSAGNLKQV 81


>gi|260425753|ref|ZP_05779733.1| conserved domain protein [Citreicella sp. SE45]
 gi|260423693|gb|EEX16943.1| conserved domain protein [Citreicella sp. SE45]
          Length = 68

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE     G DVF+H SA+  AGL  L + Q VTYD V++  +G+
Sbjct: 4  GTVKWFNSTKGFGFIEPE---NGGRDVFVHISAIERAGLTGLADAQKVTYD-VESGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESAINLAL 67


>gi|258541245|ref|YP_003186678.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-01]
 gi|329114852|ref|ZP_08243608.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
 gi|256632323|dbj|BAH98298.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-01]
 gi|256635380|dbj|BAI01349.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-03]
 gi|256638435|dbj|BAI04397.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-07]
 gi|256641489|dbj|BAI07444.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-22]
 gi|256644544|dbj|BAI10492.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-26]
 gi|256647599|dbj|BAI13540.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-32]
 gi|256650652|dbj|BAI16586.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653643|dbj|BAI19570.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-12]
 gi|326695749|gb|EGE47434.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
          Length = 68

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NP KG+GFI P+     G D F+H S +  AG+  LTEGQ V+Y+ ++   NGK
Sbjct: 4  GTVKWFNPTKGFGFIQPD---NGGQDAFVHISELERAGMHTLTEGQQVSYE-LEAGRNGK 59

Query: 65 YSAENLKLV 73
           SA ++K +
Sbjct: 60 TSAVSIKAI 68


>gi|260428302|ref|ZP_05782281.1| conserved domain protein [Citreicella sp. SE45]
 gi|260422794|gb|EEX16045.1| conserved domain protein [Citreicella sp. SE45]
          Length = 68

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PEG ++   DVF+H SAV  +GL  L + Q V+Y+ +Q+  +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPEGGSK---DVFVHISAVERSGLTELKDNQKVSYE-LQSGRDGR 59

Query: 65 YSAENLKLV 73
           SA NL+L+
Sbjct: 60 ESAINLELL 68


>gi|260461754|ref|ZP_05810000.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|319785303|ref|YP_004144779.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|259032395|gb|EEW33660.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|317171191|gb|ADV14729.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 70

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G DVF+H SAV  AGL  L EGQ + Y+  Q+   GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---NGGQDVFVHISAVERAGLSTLNEGQKINYEVEQDRRTGK 60

Query: 65 YSAENL 70
           SA +L
Sbjct: 61 SSAGSL 66


>gi|159184158|ref|NP_353140.2| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|159139492|gb|AAK85925.2| cold shock protein [Agrobacterium tumefaciens str. C58]
          Length = 69

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+  ++   DVF+H SAV  AGL  L +GQ ++Y+ +Q+  +GK
Sbjct: 4  GTVKWFNATKGYGFIQPDDGSQ---DVFVHISAVERAGLTALNDGQKLSYELMQDRRSGK 60

Query: 65 YSAENL 70
           SA  L
Sbjct: 61 MSAGEL 66


>gi|149915750|ref|ZP_01904275.1| glycine dehydrogenase [Roseobacter sp. AzwK-3b]
 gi|149810332|gb|EDM70177.1| glycine dehydrogenase [Roseobacter sp. AzwK-3b]
          Length = 68

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE     G DVF+H SAV  +GL  L + Q VTYD V+   +G+
Sbjct: 4  GTVKWFNSTKGFGFIAPE---TGGKDVFVHISAVERSGLTGLADDQKVTYD-VEAGRDGR 59

Query: 65 YSAENLKL 72
           SA NL+L
Sbjct: 60 ESATNLQL 67


>gi|13488430|ref|NP_109437.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|14028184|dbj|BAB54776.1| cold shock protein [Mesorhizobium loti MAFF303099]
          Length = 69

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H SAV  AG+  + EGQ + Y+  ++  +GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---SGGADAFVHISAVERAGMREIVEGQKIGYEMERDSKSGK 60

Query: 65 YSAENLKLV 73
           SA NL+ V
Sbjct: 61 MSACNLQAV 69


>gi|254500655|ref|ZP_05112806.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
 gi|222436726|gb|EEE43405.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
          Length = 74

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H SAV  AG+  + EGQ + YD  ++  +GK
Sbjct: 9  GTVKWFNSTKGFGFIQPD---NGGPDAFVHISAVERAGMHEIVEGQKIGYDMERDSKSGK 65

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 66 MSACNLQ 72


>gi|114765785|ref|ZP_01444880.1| cold shock family protein [Pelagibaca bermudensis HTCC2601]
 gi|114541892|gb|EAU44928.1| cold shock family protein [Roseovarius sp. HTCC2601]
          Length = 68

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G DVF+H SAV  AGL  L++ Q VTYD V+   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPDAG---GKDVFVHISAVERAGLTGLSDDQKVTYD-VEAGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESASNLAL 67


>gi|148544717|ref|YP_001272087.1| cold-shock DNA-binding protein family protein [Lactobacillus
          reuteri DSM 20016]
 gi|184154069|ref|YP_001842410.1| cold shock protein [Lactobacillus reuteri JCM 1112]
 gi|194466976|ref|ZP_03072963.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri
          100-23]
 gi|227363842|ref|ZP_03847947.1| cold-shock protein [Lactobacillus reuteri MM2-3]
 gi|325683052|ref|ZP_08162568.1| cold-shock domain family protein [Lactobacillus reuteri MM4-1A]
 gi|148531751|gb|ABQ83750.1| cold-shock DNA-binding protein family [Lactobacillus reuteri DSM
          20016]
 gi|183225413|dbj|BAG25930.1| cold shock protein [Lactobacillus reuteri JCM 1112]
 gi|194454012|gb|EDX42909.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri
          100-23]
 gi|227071069|gb|EEI09387.1| cold-shock protein [Lactobacillus reuteri MM2-3]
 gi|324977402|gb|EGC14353.1| cold-shock domain family protein [Lactobacillus reuteri MM4-1A]
          Length = 66

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N DKGYGFIT E    SGDDVF+H SA+   G  +L+EGQ VT+D
Sbjct: 1  MEQGTVKWFNDDKGYGFITRE----SGDDVFVHFSAIQGDGFKSLSEGQHVTFD 50


>gi|222082689|ref|YP_002542054.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221727368|gb|ACM30457.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 74

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G D F+H SAV  AG+  + EGQ + Y+  +++ +GK
Sbjct: 9  GTVKWFNSTKGFGFIQPD---DGGADAFVHISAVERAGMREIVEGQKIAYELERDNKSGK 65

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 66 LSACNLQ 72


>gi|163733825|ref|ZP_02141267.1| cold shock protein CspA-related protein, putative [Roseobacter
          litoralis Och 149]
 gi|161392936|gb|EDQ17263.1| cold shock protein CspA-related protein, putative [Roseobacter
          litoralis Och 149]
          Length = 68

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G ++   DVF+H SAV  AGL  L++ Q VT+D ++   +G+
Sbjct: 4  GTVKWFNSTKGFGFIAPDGGSK---DVFVHISAVERAGLTGLSDDQKVTFD-IEAGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESASNLAL 67


>gi|209547690|ref|YP_002279607.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|209533446|gb|ACI53381.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 69

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + +D  +++ +GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFDLERDNKSGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 MSACNLQ 67


>gi|148261824|ref|YP_001235951.1| cold-shock DNA-binding domain-containing protein [Acidiphilium
          cryptum JF-5]
 gi|326405328|ref|YP_004285410.1| cold shock protein [Acidiphilium multivorum AIU301]
 gi|146403505|gb|ABQ32032.1| cold-shock DNA-binding protein family [Acidiphilium cryptum JF-5]
 gi|325052190|dbj|BAJ82528.1| cold shock protein [Acidiphilium multivorum AIU301]
          Length = 68

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+  ++   DVF+H SAV  AGL  + EGQ + ++ V+    GK
Sbjct: 4  GTVKWFNATKGYGFIQPDDGSK---DVFVHISAVERAGLGRIDEGQRLEFE-VRKGREGK 59

Query: 65 YSAENLK 71
           SAENLK
Sbjct: 60 MSAENLK 66


>gi|298292870|ref|YP_003694809.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296929381|gb|ADH90190.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 69

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G DVF+H SAV  AGL  L EGQ ++Y+   +  +GK
Sbjct: 4  GTVKWFNGQKGFGFIQPD---NGGPDVFVHISAVERAGLVGLNEGQKISYEVETDRRSGK 60

Query: 65 YSAENLKLV 73
           SA +L+ V
Sbjct: 61 SSAGSLQAV 69


>gi|163735233|ref|ZP_02142668.1| cold shock protein CspA [Roseobacter litoralis Och 149]
 gi|161391447|gb|EDQ15781.1| cold shock protein CspA [Roseobacter litoralis Och 149]
          Length = 68

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G ++   DVF+H SAV  AGL  L + Q VT+D +++  +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERAGLTGLADNQKVTFD-IEDGRDGR 59

Query: 65 YSAENLKL 72
           SA N+ L
Sbjct: 60 QSATNIAL 67


>gi|296446943|ref|ZP_06888878.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
 gi|296255510|gb|EFH02602.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
          Length = 70

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI P      G DVF+H +AV  AGL  L EGQ ++Y+ V +  +GK
Sbjct: 4  GVVKWFNAHKGFGFIQP---AAGGADVFVHITAVERAGLRGLAEGQKISYEIVVDSRSGK 60

Query: 65 YSAENLKL 72
           SA+ +++
Sbjct: 61 SSADRIEV 68


>gi|159042565|ref|YP_001531359.1| cold-shock DNA-binding domain-containing protein [Dinoroseobacter
          shibae DFL 12]
 gi|157910325|gb|ABV91758.1| cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL
          12]
          Length = 68

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G +    DVF+H SAV  AGL  L + Q VT+D +++  +G+
Sbjct: 4  GTVKWFNATKGFGFIAPDGGSR---DVFVHISAVERAGLTGLEDNQKVTFD-IESGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESAANLAL 67


>gi|84502886|ref|ZP_01000999.1| cold shock family protein [Oceanicola batsensis HTCC2597]
 gi|84388869|gb|EAQ01739.1| cold shock family protein [Oceanicola batsensis HTCC2597]
          Length = 68

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PEG ++   DVF+H SAV  +GL  L +G  V++D +++  +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPEGGSK---DVFVHISAVERSGLTGLQDGAKVSFD-LESGRDGR 59

Query: 65 YSAENLKLV 73
           SA NL L+
Sbjct: 60 ESASNLALL 68


>gi|332187928|ref|ZP_08389661.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
 gi|332012089|gb|EGI54161.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
          Length = 70

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKGYGFI+P+G    G+D F+H SAV  AG+ +L + Q + Y+ ++ D
Sbjct: 1  MSMSGTVKFFNADKGYGFISPDG---GGNDAFVHISAVERAGMISLNQNQRLNYE-LEQD 56

Query: 61 ANGKYSAENLK 71
            GK SA NL+
Sbjct: 57 RRGKTSAVNLQ 67


>gi|126731183|ref|ZP_01746991.1| cold shock family protein [Sagittula stellata E-37]
 gi|126708485|gb|EBA07543.1| cold shock family protein [Sagittula stellata E-37]
          Length = 68

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE     G DVF+H SAV  +GL  L + Q V+Y+ +Q   +GK
Sbjct: 4  GTVKWFNTTKGYGFIQPE---SGGKDVFVHISAVERSGLTGLADNQKVSYE-LQTGRDGK 59

Query: 65 YSAENLKLV 73
           SA NL+L+
Sbjct: 60 ESAGNLELL 68


>gi|325291550|ref|YP_004277414.1| cold shock protein [Agrobacterium sp. H13-3]
 gi|325059403|gb|ADY63094.1| cold shock protein [Agrobacterium sp. H13-3]
          Length = 69

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+  ++   DVF+H SAV  AG+ +L +GQ ++Y+  Q+  +GK
Sbjct: 4  GTVKWFNATKGYGFIQPDDGSQ---DVFVHISAVERAGMTSLNDGQKLSYELTQDRRSGK 60

Query: 65 YSAENL 70
           SA  L
Sbjct: 61 MSAGEL 66


>gi|163794103|ref|ZP_02188076.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
          BAL199]
 gi|159180717|gb|EDP65236.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
          BAL199]
          Length = 68

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H +AV  +GL  L EGQ + Y+ ++   NGK
Sbjct: 4  GTVKWFNTTKGYGFIKPD---DGGADVFVHITAVQRSGLQGLNEGQAIMYE-MKPQRNGK 59

Query: 65 YSAENLK 71
           +AE LK
Sbjct: 60 MAAEELK 66


>gi|254441253|ref|ZP_05054746.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter
          antarcticus 307]
 gi|198251331|gb|EDY75646.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter
          antarcticus 307]
          Length = 68

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PEG ++   DVF+H SAV  AGL  L + Q VT+D +++  +G+
Sbjct: 4  GTVKWFNSTKGFGFIAPEGGSK---DVFVHISAVEQAGLTGLNDDQKVTFD-IESGRDGR 59

Query: 65 YSAENLKL 72
           SA N+ L
Sbjct: 60 ESAANIVL 67


>gi|89097123|ref|ZP_01170013.1| cold-shock protein [Bacillus sp. NRRL B-14911]
 gi|89087946|gb|EAR67057.1| cold-shock protein [Bacillus sp. NRRL B-14911]
          Length = 66

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG    GDDVF+H SA+ S G  +L EGQ VT+D V+  A
Sbjct: 1  MEQGTVKWFNAEKGFGFIEREG----GDDVFVHFSAIQSEGFKSLDEGQKVTFD-VEQGA 55

Query: 62 NGKYSA 67
           G  +A
Sbjct: 56 RGPQAA 61


>gi|126731842|ref|ZP_01747646.1| cold shock protein CspA [Sagittula stellata E-37]
 gi|126707669|gb|EBA06731.1| cold shock protein CspA [Sagittula stellata E-37]
          Length = 68

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE  ++   DVFLH SAV  AG+  + +GQ VT+D V++  +G+
Sbjct: 4  GTVKWFNSTKGFGFIQPEHGSK---DVFLHISAVERAGINRIEDGQAVTFD-VESGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESAINLAL 67


>gi|288959551|ref|YP_003449892.1| cold shock protein [Azospirillum sp. B510]
 gi|288911859|dbj|BAI73348.1| cold shock protein [Azospirillum sp. B510]
          Length = 69

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE   +   DVF+H +AV  +GL  L+EGQ V ++  + + NGK
Sbjct: 4  GTVKWFNTTKGYGFIAPEAGAK---DVFVHITAVQRSGLHALSEGQRVQFEVARGN-NGK 59

Query: 65 YSAENLKLV 73
           SA N+ +V
Sbjct: 60 DSAVNISVV 68


>gi|294678657|ref|YP_003579272.1| cold shock-like protein CspD [Rhodobacter capsulatus SB 1003]
 gi|294477477|gb|ADE86865.1| cold shock-like protein CspD [Rhodobacter capsulatus SB 1003]
          Length = 68

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI PE     G DVF+H SAV  AGL  L +GQ + YD ++   +G
Sbjct: 3  KGTVKWFNQTKGFGFIAPE---SGGKDVFVHISAVERAGLRGLNDGQAINYD-LEKGRDG 58

Query: 64 KYSAENLKL 72
          + SA NL +
Sbjct: 59 RESAINLAI 67


>gi|218670224|ref|ZP_03519895.1| probable cold shock protein [Rhizobium etli GR56]
          Length = 69

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + +D  ++  +GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---NGGTDAFVHISAVERAGMRELVEGQKIGFDLERDHKSGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 MSACNLQ 67


>gi|149203521|ref|ZP_01880491.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
 gi|149143354|gb|EDM31393.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
          Length = 68

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G DVF+H SAV  AGL  L + Q VT+D +++  +G+
Sbjct: 4  GTVKWFNSTKGFGFIAPD---NGGKDVFVHISAVERAGLTGLADNQKVTFD-IESGRDGR 59

Query: 65 YSAENLKL 72
           SA NL+L
Sbjct: 60 ESASNLQL 67


>gi|13472286|ref|NP_103853.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|260464020|ref|ZP_05812215.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|319781978|ref|YP_004141454.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|14023031|dbj|BAB49639.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
 gi|259030191|gb|EEW31472.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|317167866|gb|ADV11404.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 70

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G DVF+H SAV  AGL  L EGQ + ++  Q+   GK
Sbjct: 4  GTVKWFNATKGFGFIQPDAG---GADVFVHISAVERAGLSTLVEGQKINFEIEQDRRTGK 60

Query: 65 YSAENL 70
           SA +L
Sbjct: 61 SSAGSL 66


>gi|220933677|ref|YP_002512576.1| putative cold-shock DNA-binding domain protein [Thioalkalivibrio
          sp. HL-EbGR7]
 gi|219994987|gb|ACL71589.1| putative cold-shock DNA-binding domain protein [Thioalkalivibrio
          sp. HL-EbGR7]
          Length = 67

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFITPE   + G DVF+H SA+ ++G   L EGQ+V+++ V N  
Sbjct: 1  MSKGTVKWFNESKGFGFITPE---DGGKDVFVHFSAIEASGFRTLAEGQMVSFE-VTNGP 56

Query: 62 NGKYSAENLKLV 73
           G  +A N+K V
Sbjct: 57 KG-LAAANVKPV 67


>gi|99080915|ref|YP_613069.1| cold-shock DNA-binding protein family protein [Ruegeria sp.
          TM1040]
 gi|99037195|gb|ABF63807.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040]
          Length = 68

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI  EG +   +DVF+H SAV  +GL  L +GQ VT++ +Q+  +G+
Sbjct: 4  GTVKWFNSTKGYGFIAVEGRS---NDVFVHISAVERSGLTGLADGQAVTFE-IQSGRDGR 59

Query: 65 YSAENLKL 72
           SA +L L
Sbjct: 60 ESATDLAL 67


>gi|296532321|ref|ZP_06895059.1| CspA family cold shock transcriptional regulator [Roseomonas
          cervicalis ATCC 49957]
 gi|296267345|gb|EFH13232.1| CspA family cold shock transcriptional regulator [Roseomonas
          cervicalis ATCC 49957]
          Length = 67

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H +AV  AGL  L E Q ++YD V     GK
Sbjct: 4  GTVKWFNATKGFGFIVPQ---DGGKDVFVHITAVQKAGLQGLNENQKISYDVVME--RGK 58

Query: 65 YSAENLK 71
           +A NLK
Sbjct: 59 AAATNLK 65


>gi|315500325|ref|YP_004089128.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
 gi|315418337|gb|ADU14977.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
          Length = 67

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP+KG+GFI P+   + G+DVF+H SA+  AG   L EGQ + Y+ VQ+D  GK
Sbjct: 4  GIVKWFNPNKGFGFIQPD---DGGNDVFVHISAIERAGWRMLVEGQKIAYE-VQSD-RGK 58

Query: 65 YSAENLK 71
           +A NL+
Sbjct: 59 AAAVNLQ 65


>gi|254293790|ref|YP_003059813.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
 gi|254042321|gb|ACT59116.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
          Length = 69

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K+YN  KG+GFI P+     G+DVF+H +A+  AG+  L+EGQ V++D  Q+  
Sbjct: 1  METGTVKFYNDTKGFGFIAPD---NGGNDVFVHATALERAGMNGLSEGQKVSFDTAQDKR 57

Query: 62 NGKYSAENLK 71
          +GK + +N++
Sbjct: 58 SGKMAVDNIQ 67


>gi|116255743|ref|YP_771576.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|209546040|ref|YP_002277930.1| cold-shock protein [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|241666510|ref|YP_002984594.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|115260391|emb|CAK03495.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|209538897|gb|ACI58830.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|240861967|gb|ACS59632.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 69

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G D F+H SAV  AG+  + EGQ + Y+  +++ +GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---DGGADAFVHISAVERAGMREIVEGQKIGYELERDNKSGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 MSACNLQ 67


>gi|89056116|ref|YP_511567.1| cold-shock DNA-binding protein family protein [Jannaschia sp.
          CCS1]
 gi|88865665|gb|ABD56542.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1]
          Length = 68

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE     G DVF+H SAV  +GL  L + Q VTYD ++   +G+
Sbjct: 4  GTVKWFNSTKGFGFIAPE---TGGKDVFVHISAVERSGLTGLADNQKVTYD-LEAGRDGR 59

Query: 65 YSAENLKLV 73
           SA NLK V
Sbjct: 60 ESAVNLKAV 68


>gi|86356092|ref|YP_467984.1| cold shock protein [Rhizobium etli CFN 42]
 gi|190890106|ref|YP_001976648.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|218461048|ref|ZP_03501139.1| probable cold shock protein [Rhizobium etli Kim 5]
 gi|218515057|ref|ZP_03511897.1| probable cold shock protein [Rhizobium etli 8C-3]
 gi|86280194|gb|ABC89257.1| probable cold shock protein [Rhizobium etli CFN 42]
 gi|190695385|gb|ACE89470.1| probable cold shock protein [Rhizobium etli CIAT 652]
          Length = 74

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + +D  ++  +GK
Sbjct: 9  GTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFDLERDHKSGK 65

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 66 MSACNLQ 72


>gi|119383705|ref|YP_914761.1| cold-shock DNA-binding domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119373472|gb|ABL69065.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
          PD1222]
          Length = 68

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L + Q + Y+ +Q+  +G+
Sbjct: 4  GTVKWFNATKGYGFIAPD---DGGKDVFVHISAVERAGLTGLNDNQKIAYE-LQSGRDGR 59

Query: 65 YSAENLKLV 73
           SA +LKL+
Sbjct: 60 SSASDLKLL 68


>gi|163853346|ref|YP_001641389.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218532203|ref|YP_002423019.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240140762|ref|YP_002965242.1| cold shock protein A [Methylobacterium extorquens AM1]
 gi|254563272|ref|YP_003070367.1| cold shock protein A [Methylobacterium extorquens DM4]
 gi|163664951|gb|ABY32318.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218524506|gb|ACK85091.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240010739|gb|ACS41965.1| cold shock protein A [Methylobacterium extorquens AM1]
 gi|254270550|emb|CAX26553.1| cold shock protein A [Methylobacterium extorquens DM4]
          Length = 69

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++  KGYGFI P+     G DVF+H SAV  AGL  L EGQ V++D   +  
Sbjct: 1  MQTGTVKWFDEVKGYGFIQPD---TGGKDVFVHISAVQQAGLRGLVEGQKVSFDVENDRR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKPAAVNLQ 67


>gi|254487779|ref|ZP_05100984.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
          GAI101]
 gi|214044648|gb|EEB85286.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
          GAI101]
          Length = 68

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+G    G D+F+H SAV  AGL  L + Q VT+D ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPDG---GGKDIFVHISAVERAGLTGLADNQKVTFD-IEAGRDGR 59

Query: 65 YSAENLKL 72
           SA N+ L
Sbjct: 60 ESAGNIAL 67


>gi|121602065|ref|YP_989256.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
          KC583]
 gi|120614242|gb|ABM44843.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
          KC583]
          Length = 69

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N  KG+GFI P +GS     DVF+H SAV  +GL +L EGQ ++Y+ +++  +G
Sbjct: 4  GIVKWFNATKGFGFIQPNDGSA----DVFVHISAVERSGLNSLNEGQKISYEVLKDQRSG 59

Query: 64 KYSAENL 70
          K+SA NL
Sbjct: 60 KFSAGNL 66


>gi|149916334|ref|ZP_01904854.1| cold-shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
 gi|149809788|gb|EDM69640.1| cold-shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
          Length = 68

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   E G DVF+H SAV  +GL  L + Q V YD +Q+  +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVGYD-LQDGRDGR 59

Query: 65 YSAENLKLV 73
            A +LKL+
Sbjct: 60 QMATDLKLL 68


>gi|110678721|ref|YP_681728.1| cold shock protein CspA-related protein, putative [Roseobacter
          denitrificans OCh 114]
 gi|109454837|gb|ABG31042.1| cold shock protein CspA-related protein, putative [Roseobacter
          denitrificans OCh 114]
          Length = 68

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G ++   DVF+H SAV  AGL  L + Q VT+D ++   +G+
Sbjct: 4  GTVKWFNATKGFGFIAPDGGSK---DVFVHISAVERAGLTGLNDDQKVTFD-IEAGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESASNLAL 67


>gi|77465630|ref|YP_355133.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1]
 gi|77390048|gb|ABA81232.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1]
          Length = 68

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   ++   DVF+H +A+  AG+  L +GQ +TYD ++ D NG+
Sbjct: 4  GTVKWFNATKGFGFIAPAHGSK---DVFVHVTALERAGIRQLNDGQALTYD-METDRNGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESATNLVL 67


>gi|254512032|ref|ZP_05124099.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
          bacterium KLH11]
 gi|221535743|gb|EEE38731.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
          bacterium KLH11]
          Length = 68

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE   E G DVF+H SAV  +GL  L + Q VTY+ ++   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVTYE-LRAGRDGR 59

Query: 65 YSAENLKL 72
           SA+N++L
Sbjct: 60 ESADNIEL 67


>gi|312870567|ref|ZP_07730683.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3]
 gi|311093907|gb|EFQ52235.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3]
          Length = 66

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKGYGFI    S ESGDDVF+H SA+   G  +L EGQ V++D  + D
Sbjct: 1  MEQGTVKWFNNDKGYGFI----SRESGDDVFVHFSAIQGEGFKSLDEGQKVSFDVEEGD 55


>gi|296115724|ref|ZP_06834350.1| cold-shock DNA-binding domain protein [Gluconacetobacter hansenii
          ATCC 23769]
 gi|295977701|gb|EFG84453.1| cold-shock DNA-binding domain protein [Gluconacetobacter hansenii
          ATCC 23769]
          Length = 68

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GF+  +  T    DVF+H SAV  AGL  L EGQ V+Y+ ++   NGK
Sbjct: 4  GTVKWFNAQKGFGFLEADDGTA---DVFVHISAVERAGLHGLNEGQKVSYE-LETGRNGK 59

Query: 65 YSAENLKLV 73
           SA NL++V
Sbjct: 60 TSAANLQVV 68


>gi|84514336|ref|ZP_01001700.1| cold shock protein CspA [Loktanella vestfoldensis SKA53]
 gi|84511387|gb|EAQ07840.1| cold shock protein CspA [Loktanella vestfoldensis SKA53]
          Length = 68

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PEG ++   DVF+H SAV  +GL  L + Q VT+D +++  +G+
Sbjct: 4  GTVKWFNATKGFGFIAPEGGSK---DVFVHISAVERSGLTGLKDDQKVTFD-IESGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESAINLAL 67


>gi|325168917|ref|YP_004280707.1| cold-shock DNA-binding domain protein [Agrobacterium sp. H13-3]
 gi|325064640|gb|ADY68329.1| cold-shock DNA-binding domain protein [Agrobacterium sp. H13-3]
          Length = 69

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + ++  +++ +GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFELERDNKSGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 MSATNLQ 67


>gi|163739594|ref|ZP_02147003.1| cold shock protein CspA-related protein, putative [Phaeobacter
          gallaeciensis BS107]
 gi|161387053|gb|EDQ11413.1| cold shock protein CspA-related protein, putative [Phaeobacter
          gallaeciensis BS107]
          Length = 68

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PEG +    DVF+H SA+  AGL  L + Q VT+D ++   +G+
Sbjct: 4  GTVKWFNSTKGFGFIAPEGGSR---DVFVHISALERAGLTTLNDDQKVTFD-IEAGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESAANLAL 67


>gi|312115752|ref|YP_004013348.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
 gi|311220881|gb|ADP72249.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
          Length = 69

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  KGYGFI P+   + G DVF+H SA+  AGL  L EGQ V+++   +    K
Sbjct: 4  GVVKWYNSQKGYGFIQPD---DGGKDVFVHVSALERAGLRGLVEGQKVSFEIQTDRRTDK 60

Query: 65 YSAENLKL 72
           SA NL++
Sbjct: 61 TSAGNLQV 68


>gi|298291123|ref|YP_003693062.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296927634|gb|ADH88443.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 70

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KGYGFI P+     G DVF+H SAV  +GL  L +G+ ++++   + 
Sbjct: 1  MADTGTVKWFNEQKGYGFIQPD---SGGKDVFVHISAVQRSGLQGLRDGEKISFELQTDQ 57

Query: 61 ANGKYSAENLK 71
           +GK SA NL+
Sbjct: 58 RSGKTSAVNLR 68


>gi|218281154|ref|ZP_03487680.1| hypothetical protein EUBIFOR_00241 [Eubacterium biforme DSM 3989]
 gi|218217600|gb|EEC91138.1| hypothetical protein EUBIFOR_00241 [Eubacterium biforme DSM 3989]
          Length = 90

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFIT    +E G DVF+H S++ S G   L EGQ VTYD V++D   +
Sbjct: 24 GKVKWFNAEKGYGFIT----SEDGKDVFVHYSSINSEGFKTLEEGQTVTYDVVESDRGQQ 79

Query: 65 YSAENLKLVPKSS 77
            A N+ +V  ++
Sbjct: 80 --ANNVTVVDTAA 90


>gi|118592774|ref|ZP_01550163.1| cold shock protein [Stappia aggregata IAM 12614]
 gi|118434544|gb|EAV41196.1| cold shock protein [Stappia aggregata IAM 12614]
          Length = 69

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H +AV  AG+  + EGQ + YD  ++  +GK
Sbjct: 4  GTVKWFNSSKGFGFIQPD---NGGPDAFVHITAVERAGMHEIVEGQKIGYDMERDTKSGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 MSACNLQ 67


>gi|86139243|ref|ZP_01057813.1| cold shock family protein [Roseobacter sp. MED193]
 gi|85824087|gb|EAQ44292.1| cold shock family protein [Roseobacter sp. MED193]
          Length = 120

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI P+G T+   DVF+H SAV  +GL  L + Q VT+D ++   +G+
Sbjct: 56  GTVKWFNSTKGFGFIAPDGGTK---DVFVHISAVERSGLTGLADNQKVTFD-IEPGRDGR 111

Query: 65  YSAENLKLV 73
            +A NL LV
Sbjct: 112 EAAVNLALV 120


>gi|312877876|ref|ZP_07737822.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|311795339|gb|EFR11722.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          lactoaceticus 6A]
          Length = 66

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +KW+NP+KGYGFI    S ++G+DVF+H SA+   G   L EGQ+V +D V+ +
Sbjct: 2  RGRVKWFNPEKGYGFI----SADNGEDVFVHFSAINMEGYKTLAEGQMVEFDIVKTE 54


>gi|254495825|ref|ZP_05108737.1| cold shock protein CspD [Legionella drancourtii LLAP12]
 gi|254354982|gb|EET13605.1| cold shock protein CspD [Legionella drancourtii LLAP12]
          Length = 76

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +KW+N  KG+GFI PE   + GDD+F+H SA+  +G   L  GQ+VTYD  Q D
Sbjct: 3  RGEVKWFNNAKGWGFIIPE---QGGDDIFVHFSAIHGSGYKTLVPGQMVTYDVGQGD 56


>gi|170745312|ref|YP_001766769.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium radiotolerans JCM 2831]
 gi|170658913|gb|ACB27967.1| cold-shock DNA-binding domain protein [Methylobacterium
          radiotolerans JCM 2831]
          Length = 69

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AG+  L EGQ V+Y+   +   GK
Sbjct: 4  GTVKWFNDTKGFGFIQPD---DGGKDVFVHISAVERAGMQGLNEGQKVSYEMETDRRTGK 60

Query: 65 YSAENLK 71
           SA +L+
Sbjct: 61 QSAGSLQ 67


>gi|150376596|ref|YP_001313192.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|307315623|ref|ZP_07595160.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307321715|ref|ZP_07601104.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|150031143|gb|ABR63259.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
 gi|306892612|gb|EFN23409.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306898690|gb|EFN29353.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 69

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H SAV  AG+  + EGQ ++Y+  +++ +GK
Sbjct: 4  GTVKWFNSTKGFGFIEPD---NGGADAFVHISAVERAGMREIVEGQKLSYELERDNKSGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 MSACNLQ 67


>gi|83944389|ref|ZP_00956843.1| cold shock family protein [Sulfitobacter sp. EE-36]
 gi|83953430|ref|ZP_00962152.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
 gi|254486516|ref|ZP_05099721.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
          GAI101]
 gi|83842398|gb|EAP81566.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
 gi|83844712|gb|EAP82595.1| cold shock family protein [Sulfitobacter sp. EE-36]
 gi|214043385|gb|EEB84023.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
          GAI101]
          Length = 68

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G ++   DVF+H SAV  AGL  L + Q VT+D ++   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERAGLTGLADNQKVTFD-IEAGRDGR 59

Query: 65 YSAENLKL 72
           SA N+ L
Sbjct: 60 ESASNIAL 67


>gi|324997373|ref|ZP_08118485.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          sp. P1]
          Length = 67

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 48/71 (67%), Gaps = 7/71 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFITP+G    G D+F+H SA+ S+G  +L EGQ VT++  Q    G
Sbjct: 3  QGTVKWFNAEKGYGFITPDG---GGQDLFVHFSAIQSSGYRSLDEGQAVTFEVTQ----G 55

Query: 64 KYSAENLKLVP 74
          +   +  ++VP
Sbjct: 56 QKGPQADQVVP 66


>gi|254463779|ref|ZP_05077190.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
 gi|206684687|gb|EDZ45169.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
          Length = 68

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE  +    D+F+H SA+  AG+  L +GQ VT+D +++  +G+
Sbjct: 4  GTVKWFNSQKGFGFIAPEHGSR---DIFVHISALERAGIQQLDDGQAVTFD-IESGRDGR 59

Query: 65 YSAENLKLV 73
           SA NL L 
Sbjct: 60 ESASNLALA 68


>gi|114764472|ref|ZP_01443697.1| cold shock family protein [Pelagibaca bermudensis HTCC2601]
 gi|114543039|gb|EAU46058.1| cold shock family protein [Roseovarius sp. HTCC2601]
          Length = 68

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PEG ++   DVF+H SA+  +GL  L + Q V+Y+ +Q+  +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPEGGSK---DVFVHISALERSGLTELKDNQKVSYE-LQSGRDGR 59

Query: 65 YSAENLKLV 73
           SA NL+L+
Sbjct: 60 ESAINLELL 68


>gi|119385865|ref|YP_916920.1| cold-shock DNA-binding domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119376460|gb|ABL71224.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
          PD1222]
          Length = 68

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE     G DVFLH SA+  AGL ++ +GQ VT++ +++  +G+
Sbjct: 4  GTVKWFNAAKGFGFIAPE---HGGKDVFLHISALERAGLNSVADGQAVTFE-IESGRDGR 59

Query: 65 YSAENLKLV 73
           SA  L L 
Sbjct: 60 ESASRLALA 68


>gi|197106226|ref|YP_002131603.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
 gi|196479646|gb|ACG79174.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
          Length = 69

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AG+  L EGQ ++++  ++  +GK
Sbjct: 4  GTVKWFNATKGFGFIQPD---DGGTDVFVHISAVERAGMAGLHEGQKLSFEVQKDPRSGK 60

Query: 65 YSAENLK 71
           +A NL+
Sbjct: 61 SAAANLQ 67


>gi|150389414|ref|YP_001319463.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus
          metalliredigens QYMF]
 gi|149949276|gb|ABR47804.1| putative cold-shock DNA-binding domain protein [Alkaliphilus
          metalliredigens QYMF]
          Length = 66

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KGYGFIT     E+GDDVF+H SA+   G   L EGQ V ++ +Q D
Sbjct: 1  MEKGTVKWFNSEKGYGFIT----RENGDDVFVHFSAITMDGFKTLEEGQAVQFEIIQGD 55


>gi|114797127|ref|YP_758844.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
 gi|114737301|gb|ABI75426.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
          Length = 69

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI P+   + G D+F+H SAV  +GL  L E Q ++Y+  +++  GK
Sbjct: 4  GKVKWFNDQKGFGFIKPD---DGGADIFVHISAVERSGLKTLAENQSISYELYKDERRGK 60

Query: 65 YSAENLKLV 73
           SA +LK++
Sbjct: 61 TSAVDLKVL 69


>gi|154252646|ref|YP_001413470.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
          lavamentivorans DS-1]
 gi|154156596|gb|ABS63813.1| putative cold-shock DNA-binding domain protein [Parvibaculum
          lavamentivorans DS-1]
          Length = 67

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KGYGFI P   ++ G DVF+H SAV  AG+  L EGQ + Y+ V     GK
Sbjct: 4  GVVKWFNTQKGYGFIQP---SDGGRDVFVHISAVERAGMSTLNEGQKINYELVTE--KGK 58

Query: 65 YSAENLKL 72
           SA NL +
Sbjct: 59 TSAANLTV 66


>gi|297626180|ref|YP_003687943.1| Cold shock-like protein CspA [Propionibacterium freudenreichii
          subsp. shermanii CIRM-BIA1]
 gi|296921945|emb|CBL56505.1| Cold shock-like protein CspA [Propionibacterium freudenreichii
          subsp. shermanii CIRM-BIA1]
          Length = 68

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI  +GS+   DDVF+H SA+ S G  +L EGQ V +D  Q     +
Sbjct: 4  GTVKWFNAEKGYGFIAVDGSS---DDVFVHYSAIDSTGFRSLDEGQKVEFDIAQGPKGQQ 60

Query: 65 YSAENLKLV 73
            AE++KLV
Sbjct: 61 --AEHVKLV 67


>gi|84501623|ref|ZP_00999795.1| cold shock family protein [Oceanicola batsensis HTCC2597]
 gi|84390244|gb|EAQ02803.1| cold shock family protein [Oceanicola batsensis HTCC2597]
          Length = 68

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE   E G DVF+H SAV  +GL  L + Q V Y+ +Q+  +G+
Sbjct: 4  GTVKWFNTTKGYGFIEPE---EGGKDVFVHISAVERSGLTGLADNQKVGYE-LQDGRDGR 59

Query: 65 YSAENLKLV 73
            A +LKL+
Sbjct: 60 KMASDLKLL 68


>gi|294499464|ref|YP_003563164.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295704814|ref|YP_003597889.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294349401|gb|ADE69730.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294802473|gb|ADF39539.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N +KG+GFI  EG    GDDVF+H SA+ S G  +L EGQ VT+D  Q
Sbjct: 1  MEQGKVKWFNAEKGFGFIEREG----GDDVFVHFSAIQSEGFKSLDEGQAVTFDVEQ 53


>gi|163744653|ref|ZP_02152013.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
 gi|161381471|gb|EDQ05880.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
          Length = 68

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G ++   DVF+H SAV  AGL  L + Q VT+D ++   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERAGLTGLADNQKVTFD-IEAGRDGR 59

Query: 65 YSAENLKL 72
           SA N+ L
Sbjct: 60 ESATNIAL 67


>gi|84685583|ref|ZP_01013480.1| cold shock family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84666249|gb|EAQ12722.1| cold shock family protein [Rhodobacterales bacterium HTCC2654]
          Length = 68

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   +E G DVF+H SAV  +GL  L + Q V+Y+ +Q   +G+
Sbjct: 4  GTVKWFNATKGFGFIEP---SEGGKDVFVHISAVERSGLTGLADNQKVSYE-LQAGRDGR 59

Query: 65 YSAENLKLV 73
           SA NL+L+
Sbjct: 60 ESAANLELL 68


>gi|158321031|ref|YP_001513538.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus
          oremlandii OhILAs]
 gi|158141230|gb|ABW19542.1| cold-shock DNA-binding domain protein [Alkaliphilus oremlandii
          OhILAs]
          Length = 66

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KGYGFI    S E+GDDVF+H SA+   G   L EGQ V ++ VQ D
Sbjct: 1  MEKGTVKWFNSEKGYGFI----SRENGDDVFVHYSAITMDGFKTLEEGQAVNFEIVQGD 55


>gi|323487951|ref|ZP_08093207.1| cold shock protein [Planococcus donghaensis MPA1U2]
 gi|323398375|gb|EGA91165.1| cold shock protein [Planococcus donghaensis MPA1U2]
          Length = 66

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N +KG+GFI  EG    GDDVF+H SA+ S G  +L EGQ VT+D  Q
Sbjct: 1  MEQGKVKWFNSEKGFGFIEREG----GDDVFVHFSAIQSEGFKSLDEGQEVTFDIEQ 53


>gi|241518615|ref|YP_002979243.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240863028|gb|ACS60692.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 69

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + ++  +++ +GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFELERDNKSGK 60

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 61 MSACNLQ 67


>gi|227544424|ref|ZP_03974473.1| cold-shock protein [Lactobacillus reuteri CF48-3A]
 gi|300908271|ref|ZP_07125736.1| cold-shock domain family protein [Lactobacillus reuteri SD2112]
 gi|77745315|gb|ABB02558.1| putative cold shock protein [Lactobacillus reuteri]
 gi|227185587|gb|EEI65658.1| cold-shock protein [Lactobacillus reuteri CF48-3A]
 gi|300894518|gb|EFK87875.1| cold-shock domain family protein [Lactobacillus reuteri SD2112]
          Length = 66

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKGYGFIT E    SGDDVF+H SA+   G  +L+EGQ VT++ V+   
Sbjct: 1  MEQGTVKWFNDDKGYGFITRE----SGDDVFVHFSAIQGDGFKSLSEGQHVTFE-VEEGE 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGLQAANVVK 65


>gi|84514337|ref|ZP_01001701.1| cold shock family protein [Loktanella vestfoldensis SKA53]
 gi|84511388|gb|EAQ07841.1| cold shock family protein [Loktanella vestfoldensis SKA53]
          Length = 80

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PEG ++   DVF+H SAV  +GL  L + Q V +D ++   +G+
Sbjct: 15 GTVKWFNTTKGYGFIAPEGGSK---DVFVHISAVERSGLTGLKDNQKVNFD-IEASRDGR 70

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 71 ESAVNLTL 78


>gi|222106593|ref|YP_002547384.1| cold shock protein [Agrobacterium vitis S4]
 gi|221737772|gb|ACM38668.1| cold shock protein [Agrobacterium vitis S4]
          Length = 70

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++K++N DKG+GFITPEG  +   DVF+H SA+ +AG+  L +GQ VT+D  + D
Sbjct: 1  MAIKGTVKFFNQDKGFGFITPEGGAK---DVFVHISALQAAGIQTLRDGQEVTFD-TEAD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 RMGK 60


>gi|159044762|ref|YP_001533556.1| putative cold-shock DNA-binding domain-containing protein
          [Dinoroseobacter shibae DFL 12]
 gi|157912522|gb|ABV93955.1| putative cold-shock DNA-binding domain protein [Dinoroseobacter
          shibae DFL 12]
          Length = 68

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+G +    DVF+H SAV  AGL  L + Q VT+D ++   +G+
Sbjct: 4  GTVKWFNETKGYGFIAPDGGSR---DVFVHISAVERAGLTGLKDNQKVTFD-IEAGRDGR 59

Query: 65 YSAENLKL 72
           SA N+ L
Sbjct: 60 ESATNIVL 67


>gi|167647171|ref|YP_001684834.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
          K31]
 gi|167349601|gb|ABZ72336.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
          Length = 67

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V++D  +    GK
Sbjct: 4  GVVKWFNGTKGFGFIQPD---DGGKDVFVHISAVERAGLRGLDEGQKVSFDTAEE--RGK 58

Query: 65 YSAENLK 71
           +A NLK
Sbjct: 59 IAANNLK 65


>gi|259047285|ref|ZP_05737686.1| cold shock protein [Granulicatella adiacens ATCC 49175]
 gi|259036061|gb|EEW37316.1| cold shock protein [Granulicatella adiacens ATCC 49175]
          Length = 75

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           + +G++KW+N +KG+GFI  EG    G+DVF+H SA+ S G   L EGQ V +D V+  
Sbjct: 9  FMEQGTVKWFNSEKGFGFIEREG----GNDVFVHFSAIQSEGFKTLEEGQAVQFD-VEEG 63

Query: 61 ANGKYSAENLKL 72
          A G  +A  +KL
Sbjct: 64 ARGPQAANVVKL 75


>gi|254464633|ref|ZP_05078044.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
 gi|206685541|gb|EDZ46023.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
          Length = 68

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G ++   DVF+H SAV  +GL  L + Q VT+D ++   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERSGLTGLADNQKVTFD-IEAGRDGR 59

Query: 65 YSAENLKL 72
           SA NL+L
Sbjct: 60 ESAVNLQL 67


>gi|16119742|ref|NP_396448.1| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|15162334|gb|AAK90889.1| cold shock protein [Agrobacterium tumefaciens str. C58]
          Length = 74

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + +D  ++  +GK
Sbjct: 9  GTVKWFNSTKGFGFIQPD---NGGVDAFVHISAVERAGMRELVEGQKIGFDLERDMKSGK 65

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 66 MSACNLQ 72


>gi|329851859|ref|ZP_08266540.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
 gi|328839708|gb|EGF89281.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
          Length = 67

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   +  G+DVF+H SAV  AGL  L +GQ V+Y+ +QN+  GK
Sbjct: 4  GTVKWFNSTKGFGFIQP---SSGGNDVFVHISAVQRAGLQGLADGQKVSYE-LQNE-RGK 58

Query: 65 YSAENLKLV 73
           +A ++KL+
Sbjct: 59 TAAVDIKLL 67


>gi|16262549|ref|NP_435342.1| CspA5 cold shock protein transcriptional regulator [Sinorhizobium
          meliloti 1021]
 gi|307300703|ref|ZP_07580478.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307319113|ref|ZP_07598543.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|14523160|gb|AAK64754.1| CspA7 cold shock protein [Sinorhizobium meliloti 1021]
 gi|306895220|gb|EFN25976.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306904237|gb|EFN34822.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 67

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N DKG+GFITPE   + G DVF+H SA+   G  +L EG  V+YD  Q+   G
Sbjct: 3  KGTVKFFNDDKGFGFITPE---DGGTDVFVHVSALQHGG--SLKEGDKVSYDVGQDRKTG 57

Query: 64 KYSAENLKLV 73
          K  AEN+ ++
Sbjct: 58 KSKAENVSVL 67


>gi|206602877|gb|EDZ39358.1| cold shock protein [Leptospirillum sp. Group II '5-way CG']
          Length = 68

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N +KGYGFI    S E+G+D+F+H SA+  +G   L EGQLV ++ +Q+ A G
Sbjct: 3  RGHVKWFNANKGYGFI----SQENGEDIFVHYSAIGGSGFKTLEEGQLVEFE-IQSGAKG 57

Query: 64 KYSAENLKL 72
            +A   K+
Sbjct: 58 PQAANVQKV 66


>gi|260467130|ref|ZP_05813309.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|259029142|gb|EEW30439.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
          Length = 68

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K+YN  KG+GFI P    + G DVF+H SA+  AG   L EGQ + ++ ++ DA
Sbjct: 1  MNTGTVKFYNGQKGFGFIQP---ADGGKDVFVHVSALERAGFPGLAEGQKLQFE-LERDA 56

Query: 62 NGKYSAENLKLV 73
           G+ SA NL+L+
Sbjct: 57 KGRESAANLQLI 68


>gi|85375609|ref|YP_459671.1| cold shock protein [Erythrobacter litoralis HTCC2594]
 gi|84788692|gb|ABC64874.1| cold shock protein [Erythrobacter litoralis HTCC2594]
          Length = 253

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++K++N  KG+GFI  EG    G+DVF+H SAV  AGL  L EGQ + ++ V  D  G
Sbjct: 98  KGTVKFFNGQKGFGFIQQEGG---GEDVFVHISAVERAGLDGLAEGQELEFNLV--DRGG 152

Query: 64  KYSAENLKLV 73
           K SA++L++V
Sbjct: 153 KVSAQDLQVV 162



 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GF+  +   +   D F+H SAV  +GL  + EG+   +D ++ D  GK
Sbjct: 187 GTVKFFNSMKGFGFLVRD---DGQPDAFVHISAVERSGLSGIDEGERYEFD-LEVDRRGK 242

Query: 65  YSAENL 70
           YSA NL
Sbjct: 243 YSAVNL 248


>gi|294509040|ref|YP_003565929.1| cold shock domain protein [Bacillus megaterium QM B1551]
 gi|294352344|gb|ADE72666.1| cold shock domain protein [Bacillus megaterium QM B1551]
          Length = 130

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 4/58 (6%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           ++ +G++KW+N DKG+GFI  EG    GDDVF+H SA+   G  +L EGQ VT+D  Q
Sbjct: 64  IMTQGTVKWFNADKGFGFIEIEG----GDDVFVHFSAIQGEGFKSLEEGQKVTFDIEQ 117


>gi|116494185|ref|YP_805919.1| cold shock protein [Lactobacillus casei ATCC 334]
 gi|191637512|ref|YP_001986678.1| Cold shock protein A [Lactobacillus casei BL23]
 gi|199597005|ref|ZP_03210438.1| Cold shock protein [Lactobacillus rhamnosus HN001]
 gi|227534311|ref|ZP_03964360.1| CspA family cold shock transcriptional regulator [Lactobacillus
          paracasei subsp. paracasei ATCC 25302]
 gi|229553636|ref|ZP_04442361.1| CspA family cold shock transcriptional regulator [Lactobacillus
          rhamnosus LMS2-1]
 gi|239629560|ref|ZP_04672591.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
          subsp. paracasei 8700:2]
 gi|258507603|ref|YP_003170354.1| cold shock protein [Lactobacillus rhamnosus GG]
 gi|258538778|ref|YP_003173277.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
 gi|301065674|ref|YP_003787697.1| cold shock protein [Lactobacillus casei str. Zhang]
 gi|40644037|emb|CAD92346.1| cold shock protein A [Lactobacillus casei]
 gi|116104335|gb|ABJ69477.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC
          334]
 gi|190711814|emb|CAQ65820.1| Cold shock protein A [Lactobacillus casei BL23]
 gi|199592138|gb|EDZ00212.1| Cold shock protein [Lactobacillus rhamnosus HN001]
 gi|205270982|emb|CAP07854.1| cold-shock protein [Lactobacillus casei BL23]
 gi|227188035|gb|EEI68102.1| CspA family cold shock transcriptional regulator [Lactobacillus
          paracasei subsp. paracasei ATCC 25302]
 gi|229313014|gb|EEN78987.1| CspA family cold shock transcriptional regulator [Lactobacillus
          rhamnosus LMS2-1]
 gi|239528246|gb|EEQ67247.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
          subsp. paracasei 8700:2]
 gi|257147530|emb|CAR86503.1| Cold shock protein [Lactobacillus rhamnosus GG]
 gi|257150454|emb|CAR89426.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
 gi|259648959|dbj|BAI41121.1| cold shock protein [Lactobacillus rhamnosus GG]
 gi|300438081|gb|ADK17847.1| Cold shock protein [Lactobacillus casei str. Zhang]
 gi|327381559|gb|AEA53035.1| Cold-shock domain family protein [Lactobacillus casei LC2W]
 gi|327384722|gb|AEA56196.1| Cold-shock domain family protein [Lactobacillus casei BD-II]
 gi|328476231|gb|EGF46922.1| cold shock protein [Lactobacillus rhamnosus MTCC 5462]
          Length = 66

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKGYGFIT E     G DVF+H SA+   G  +L EGQ V+YD  Q+D 
Sbjct: 1  MQKGTVKWFNADKGYGFITGE----DGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSD- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAANVTKL 66


>gi|294498556|ref|YP_003562256.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295703859|ref|YP_003596934.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294348493|gb|ADE68822.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294801518|gb|ADF38584.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N DKG+GFI  EG    GDDVF+H SA+   G  +L EGQ VT+D  Q
Sbjct: 3  QGTVKWFNADKGFGFIEIEG----GDDVFVHFSAIQGEGFKSLEEGQKVTFDIEQ 53


>gi|126739561|ref|ZP_01755253.1| cold-shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
 gi|126719207|gb|EBA15917.1| cold-shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
          Length = 68

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+G ++   DVF+H SAV  +GL  L + Q VT+D ++   +G+
Sbjct: 4  GTVKWFNSTKGYGFIAPDGGSK---DVFVHISAVERSGLTGLADNQKVTFD-IEPGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESAVNLAL 67


>gi|254470899|ref|ZP_05084302.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio
          sp. JE062]
 gi|211960041|gb|EEA95238.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio
          sp. JE062]
          Length = 68

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 4/70 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI PE   +   DVF+H SAV  +GL  L +GQ VT++ ++   +G
Sbjct: 3  KGTVKWFNTTKGFGFIAPE---DGSKDVFVHISAVERSGLSTLADGQEVTFE-LETGRDG 58

Query: 64 KYSAENLKLV 73
          + SA NL+ V
Sbjct: 59 RQSAVNLETV 68


>gi|307295485|ref|ZP_07575321.1| cold-shock DNA-binding domain protein [Sphingobium
          chlorophenolicum L-1]
 gi|306878524|gb|EFN09744.1| cold-shock DNA-binding domain protein [Sphingobium
          chlorophenolicum L-1]
          Length = 68

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKGYGFI PE   + G+D F+H SAV  AG+  L + Q ++Y+ V+ D  GK
Sbjct: 4  GTVKFFNADKGYGFIAPE---DGGNDSFVHISAVERAGMVTLQKDQRLSYE-VEMDRRGK 59

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 60 QSAVNLQ 66


>gi|49474484|ref|YP_032526.1| cold shock protein [Bartonella quintana str. Toulouse]
 gi|49239988|emb|CAF26402.1| Cold shock protein [Bartonella quintana str. Toulouse]
          Length = 69

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   ++   DVF+H SAV  +GL  L EGQ ++YD + +  +GK
Sbjct: 4  GTVKWFNATKGFGFIQP---SDGSVDVFVHISAVERSGLSTLNEGQKISYDVLHDRRSGK 60

Query: 65 YSAENL 70
           +A NL
Sbjct: 61 PAAGNL 66


>gi|332637467|ref|ZP_08416330.1| cold shock protein [Weissella cibaria KACC 11862]
          Length = 66

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKG+GF+    S ESGDDVF+H SA+   G  +L EGQ V+++  Q D
Sbjct: 1  MEQGTVKWFNADKGFGFL----SRESGDDVFVHFSAIQGDGFKSLEEGQAVSFEVQQGD 55


>gi|326386099|ref|ZP_08207723.1| cold-shock DNA-binding protein family protein [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326209324|gb|EGD60117.1| cold-shock DNA-binding protein family protein [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 80

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKG+GFI P+   E GDD F+H SAV  +G+  L + Q V Y+ ++ D  GK
Sbjct: 16 GTVKFFNTDKGFGFIAPD---EGGDDSFVHISAVERSGMRTLLKDQRVKYE-LETDKRGK 71

Query: 65 YSAENLKLV 73
           +A NL++V
Sbjct: 72 TAAVNLEIV 80


>gi|17987793|ref|NP_540427.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M]
 gi|62289409|ref|YP_221202.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699335|ref|YP_413909.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
          biovar Abortus 2308]
 gi|189023660|ref|YP_001934428.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
 gi|225626929|ref|ZP_03784968.1| cold shock protein CSPA [Brucella ceti str. Cudo]
 gi|225851957|ref|YP_002732190.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
          ATCC 23457]
 gi|237814894|ref|ZP_04593892.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
 gi|254688721|ref|ZP_05151975.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
          bv. 6 str. 870]
 gi|254693204|ref|ZP_05155032.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
          bv. 3 str. Tulya]
 gi|254696849|ref|ZP_05158677.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
          bv. 2 str. 86/8/59]
 gi|254701228|ref|ZP_05163056.1| ATP/GTP-binding site motif A, P-loop protein [Brucella suis bv. 5
          str. 513]
 gi|254707848|ref|ZP_05169676.1| ATP/GTP-binding site motif A, P-loop protein [Brucella
          pinnipedialis M163/99/10]
 gi|254709571|ref|ZP_05171382.1| ATP/GTP-binding site motif A, P-loop protein [Brucella
          pinnipedialis B2/94]
 gi|254713013|ref|ZP_05174824.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti
          M644/93/1]
 gi|254716633|ref|ZP_05178444.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti
          M13/05/1]
 gi|254718601|ref|ZP_05180412.1| ATP/GTP-binding site motif A, P-loop protein [Brucella sp. 83/13]
 gi|254729754|ref|ZP_05188332.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
          bv. 4 str. 292]
 gi|256031063|ref|ZP_05444677.1| ATP/GTP-binding site motif A, P-loop protein [Brucella
          pinnipedialis M292/94/1]
 gi|256044140|ref|ZP_05447047.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
          bv. 1 str. Rev.1]
 gi|256060557|ref|ZP_05450725.1| ATP/GTP-binding site motif A, P-loop protein [Brucella neotomae
          5K33]
 gi|256112943|ref|ZP_05453851.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
          bv. 3 str. Ether]
 gi|256159127|ref|ZP_05456948.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti
          M490/95/1]
 gi|256254466|ref|ZP_05460002.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti
          B1/94]
 gi|256256968|ref|ZP_05462504.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
          bv. 9 str. C68]
 gi|256264533|ref|ZP_05467065.1| predicted protein [Brucella melitensis bv. 2 str. 63/9]
 gi|256368878|ref|YP_003106384.1| cold shock protein CspA [Brucella microti CCM 4915]
 gi|260168194|ref|ZP_05755005.1| cold shock protein CspA [Brucella sp. F5/99]
 gi|260545840|ref|ZP_05821581.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
          8038]
 gi|260563497|ref|ZP_05833983.1| ATP/GTP-binding site-containing protein A [Brucella melitensis
          bv. 1 str. 16M]
 gi|260754199|ref|ZP_05866547.1| cold shock protein cspA [Brucella abortus bv. 6 str. 870]
 gi|260757419|ref|ZP_05869767.1| cold shock protein cspA [Brucella abortus bv. 4 str. 292]
 gi|260761244|ref|ZP_05873587.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883224|ref|ZP_05894838.1| cold shock protein cspA [Brucella abortus bv. 9 str. C68]
 gi|261213446|ref|ZP_05927727.1| cold shock protein cspA [Brucella abortus bv. 3 str. Tulya]
 gi|261218434|ref|ZP_05932715.1| predicted protein [Brucella ceti M13/05/1]
 gi|261221638|ref|ZP_05935919.1| cold shock protein cspA [Brucella ceti B1/94]
 gi|261315336|ref|ZP_05954533.1| cold shock protein cspA [Brucella pinnipedialis M163/99/10]
 gi|261317099|ref|ZP_05956296.1| predicted protein [Brucella pinnipedialis B2/94]
 gi|261320717|ref|ZP_05959914.1| cold shock protein cspA [Brucella ceti M644/93/1]
 gi|261324552|ref|ZP_05963749.1| predicted protein [Brucella neotomae 5K33]
 gi|261751767|ref|ZP_05995476.1| predicted protein [Brucella suis bv. 5 str. 513]
 gi|261757654|ref|ZP_06001363.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
          F5/99]
 gi|265983577|ref|ZP_06096312.1| cold shock protein cspA [Brucella sp. 83/13]
 gi|265988135|ref|ZP_06100692.1| cold shock protein cspA [Brucella pinnipedialis M292/94/1]
 gi|265990551|ref|ZP_06103108.1| cold shock protein cspA [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994381|ref|ZP_06106938.1| cold shock protein cspA [Brucella melitensis bv. 3 str. Ether]
 gi|265997600|ref|ZP_06110157.1| cold shock protein cspA [Brucella ceti M490/95/1]
 gi|294851801|ref|ZP_06792474.1| cold shock protein [Brucella sp. NVSL 07-0026]
 gi|297247821|ref|ZP_06931539.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
          bv. 5 str. B3196]
 gi|306839881|ref|ZP_07472679.1| cold shock protein CSPA [Brucella sp. NF 2653]
 gi|306842293|ref|ZP_07474955.1| cold shock protein CSPA [Brucella sp. BO2]
 gi|306845051|ref|ZP_07477632.1| cold shock protein CSPA [Brucella sp. BO1]
 gi|17983518|gb|AAL52691.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M]
 gi|62195541|gb|AAX73841.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615436|emb|CAJ10405.1| ATP/GTP-binding site motif A (P-loop):Cold-shock DNA-binding
          domain [Brucella melitensis biovar Abortus 2308]
 gi|189019232|gb|ACD71954.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
 gi|225618586|gb|EEH15629.1| cold shock protein CSPA [Brucella ceti str. Cudo]
 gi|225640322|gb|ACO00236.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
          ATCC 23457]
 gi|237789731|gb|EEP63941.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
 gi|255999036|gb|ACU47435.1| cold shock protein CspA [Brucella microti CCM 4915]
 gi|260097247|gb|EEW81122.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
          8038]
 gi|260153513|gb|EEW88605.1| ATP/GTP-binding site-containing protein A [Brucella melitensis
          bv. 1 str. 16M]
 gi|260667737|gb|EEX54677.1| cold shock protein cspA [Brucella abortus bv. 4 str. 292]
 gi|260671676|gb|EEX58497.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674307|gb|EEX61128.1| cold shock protein cspA [Brucella abortus bv. 6 str. 870]
 gi|260872752|gb|EEX79821.1| cold shock protein cspA [Brucella abortus bv. 9 str. C68]
 gi|260915053|gb|EEX81914.1| cold shock protein cspA [Brucella abortus bv. 3 str. Tulya]
 gi|260920222|gb|EEX86875.1| cold shock protein cspA [Brucella ceti B1/94]
 gi|260923523|gb|EEX90091.1| predicted protein [Brucella ceti M13/05/1]
 gi|261293407|gb|EEX96903.1| cold shock protein cspA [Brucella ceti M644/93/1]
 gi|261296322|gb|EEX99818.1| predicted protein [Brucella pinnipedialis B2/94]
 gi|261300532|gb|EEY04029.1| predicted protein [Brucella neotomae 5K33]
 gi|261304362|gb|EEY07859.1| cold shock protein cspA [Brucella pinnipedialis M163/99/10]
 gi|261737638|gb|EEY25634.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
          F5/99]
 gi|261741520|gb|EEY29446.1| predicted protein [Brucella suis bv. 5 str. 513]
 gi|262552068|gb|EEZ08058.1| cold shock protein cspA [Brucella ceti M490/95/1]
 gi|262765494|gb|EEZ11283.1| cold shock protein cspA [Brucella melitensis bv. 3 str. Ether]
 gi|263001335|gb|EEZ13910.1| cold shock protein cspA [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094866|gb|EEZ18604.1| predicted protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264660332|gb|EEZ30593.1| cold shock protein cspA [Brucella pinnipedialis M292/94/1]
 gi|264662169|gb|EEZ32430.1| cold shock protein cspA [Brucella sp. 83/13]
 gi|294820390|gb|EFG37389.1| cold shock protein [Brucella sp. NVSL 07-0026]
 gi|297174990|gb|EFH34337.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
          bv. 5 str. B3196]
 gi|306274683|gb|EFM56472.1| cold shock protein CSPA [Brucella sp. BO1]
 gi|306287601|gb|EFM59052.1| cold shock protein CSPA [Brucella sp. BO2]
 gi|306405067|gb|EFM61348.1| cold shock protein CSPA [Brucella sp. NF 2653]
 gi|326408455|gb|ADZ65520.1| ATP/GTP-binding site motif A (P-loop) [Brucella melitensis M28]
 gi|326538172|gb|ADZ86387.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
          M5-90]
          Length = 69

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFI P+   +   DVF+H SAV  AGL +L EGQ V Y+ V +  +GK
Sbjct: 4  GTVKFFNSTKGFGFIQPD---DGSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRRSGK 60

Query: 65 YSAENLK 71
           +A NL+
Sbjct: 61 SAAANLE 67


>gi|296115123|ref|ZP_06833764.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295978224|gb|EFG84961.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 67

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI P+   + G DVF+H +AV +AGL  L E Q V+YD       GK
Sbjct: 4  GKVKWFNATKGFGFIMPD---DGGKDVFVHITAVQAAGLRGLDENQAVSYDITME--RGK 58

Query: 65 YSAENLK 71
           +A NLK
Sbjct: 59 AAASNLK 65


>gi|83593249|ref|YP_427001.1| cold-shock DNA-binding protein family protein [Rhodospirillum
          rubrum ATCC 11170]
 gi|83576163|gb|ABC22714.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
          11170]
          Length = 68

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H +A+  AG+ +L EGQ VTYD ++    GK
Sbjct: 4  GTVKWFNTTKGFGFIAPD---NGGADAFVHITALERAGIHSLNEGQRVTYD-LEMGRTGK 59

Query: 65 YSAENLKL 72
           +A N++L
Sbjct: 60 MAAINIRL 67


>gi|26987721|ref|NP_743146.1| cold-shock domain-contain protein [Pseudomonas putida KT2440]
 gi|24982409|gb|AAN66610.1|AE016288_9 cold-shock domain family protein [Pseudomonas putida KT2440]
          Length = 165

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 4/56 (7%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
            +G++KW+N +KGYGFITP    ESG D+F+H  A+   G  +L EGQ VT++ VQ
Sbjct: 101 QKGTVKWFNDEKGYGFITP----ESGPDLFVHFRAIEGNGFKSLKEGQQVTFEAVQ 152


>gi|260431448|ref|ZP_05785419.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415276|gb|EEX08535.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 68

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE   + G DVF+H S+V  +GL  L + Q VTY+ ++   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPE---DGGKDVFVHISSVERSGLTGLADNQKVTYE-LRAGRDGR 59

Query: 65 YSAENLKLV 73
           SA+N++LV
Sbjct: 60 ESADNIELV 68


>gi|226311427|ref|YP_002771321.1| cold shock protein [Brevibacillus brevis NBRC 100599]
 gi|226094375|dbj|BAH42817.1| cold shock protein [Brevibacillus brevis NBRC 100599]
          Length = 66

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  EG    GDDVF+H SA+ S G  +L EGQ V ++ VQ  +
Sbjct: 1  MQQGIVKWFNAEKGYGFIQVEG----GDDVFVHYSAIQSEGFKSLDEGQKVEFEIVQG-S 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAASVTKL 66


>gi|154685002|ref|YP_001420163.1| hypothetical protein RBAM_005400 [Bacillus amyloliquefaciens
          FZB42]
 gi|154350853|gb|ABS72932.1| CspC [Bacillus amyloliquefaciens FZB42]
          Length = 67

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI      E+GDDVF+H SA+ S G  +L EGQ VT+D V+  A
Sbjct: 1  MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSDGFKSLDEGQKVTFD-VEQGA 55

Query: 62 NGKYSA 67
           G  +A
Sbjct: 56 RGAQAA 61


>gi|149202227|ref|ZP_01879200.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
 gi|149144325|gb|EDM32356.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
          Length = 68

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+G    G DVF+H SAV  AGL  L + Q V +D ++   +G+
Sbjct: 4  GTVKWFNATKGYGFIAPDG---GGKDVFVHISAVERAGLTGLADNQKVKFD-IEAGRDGR 59

Query: 65 YSAENLKL 72
           SA N+ L
Sbjct: 60 ESASNIVL 67


>gi|114767284|ref|ZP_01446124.1| cold shock family protein [Pelagibaca bermudensis HTCC2601]
 gi|114540590|gb|EAU43663.1| cold shock family protein [Roseovarius sp. HTCC2601]
          Length = 68

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE   E G DVF+H SAV  +GL  L + Q V+YD ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYD-LKEGRDGR 59

Query: 65 YSAENLK 71
            A +LK
Sbjct: 60 MMASDLK 66


>gi|311066997|ref|YP_003971920.1| cold-shock protein [Bacillus atrophaeus 1942]
 gi|310867514|gb|ADP30989.1| cold-shock protein [Bacillus atrophaeus 1942]
          Length = 67

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI      E+GDDVF+H SA+ S G  +L EGQ VT+D V+  A
Sbjct: 1  MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSDGFKSLDEGQKVTFD-VEQGA 55

Query: 62 NGKYSA 67
           G  +A
Sbjct: 56 RGAQAA 61


>gi|315498412|ref|YP_004087216.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
 gi|315416424|gb|ADU13065.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
          Length = 67

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P    E G+DVF+H +AV  AGL  L +GQ ++Y+       GK
Sbjct: 4  GTVKWFNATKGFGFIQP---AEGGNDVFVHITAVQRAGLQGLADGQKLSYEL--QTERGK 58

Query: 65 YSAENLKLV 73
           +A NL+L+
Sbjct: 59 TAAVNLQLL 67


>gi|145593188|ref|YP_001157485.1| cold-shock DNA-binding domain-containing protein [Salinispora
          tropica CNB-440]
 gi|145302525|gb|ABP53107.1| cold-shock DNA-binding protein family [Salinispora tropica
          CNB-440]
          Length = 67

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFITP+G    G DVF H SA+A++G  +L E Q V +D  Q     +
Sbjct: 4  GTVKWFNADKGFGFITPDG---GGADVFAHFSAIATSGFRSLDENQKVEFDITQGQKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENIR 65


>gi|308172349|ref|YP_003919054.1| cold-shock protein [Bacillus amyloliquefaciens DSM 7]
 gi|307605213|emb|CBI41584.1| cold-shock protein [Bacillus amyloliquefaciens DSM 7]
 gi|328552171|gb|AEB22663.1| cold-shock protein [Bacillus amyloliquefaciens TA208]
 gi|328910438|gb|AEB62034.1| cold-shock protein [Bacillus amyloliquefaciens LL3]
          Length = 66

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI      E+GDDVF+H SA+ S G  +L EGQ VT+D V+  A
Sbjct: 1  MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSDGFKSLDEGQKVTFD-VEQGA 55

Query: 62 NGKYSA 67
           G  +A
Sbjct: 56 RGAQAA 61


>gi|116249427|ref|YP_765268.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|241113498|ref|YP_002973333.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|115254077|emb|CAK12474.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|240861706|gb|ACS59372.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 67

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKG+GFITPEG    G DVF+H SA+ S G  +L EG  V+++  Q+   GK
Sbjct: 4  GTVKFFNDDKGFGFITPEG---GGQDVFVHVSALQSGG--SLREGDKVSFEVGQDRKTGK 58

Query: 65 YSAENL 70
            AEN+
Sbjct: 59 SKAENV 64


>gi|227515455|ref|ZP_03945504.1| CspA family cold shock transcriptional regulator [Lactobacillus
          fermentum ATCC 14931]
 gi|227086169|gb|EEI21481.1| CspA family cold shock transcriptional regulator [Lactobacillus
          fermentum ATCC 14931]
 gi|299783543|gb|ADJ41541.1| CspA family cold shock transcriptional regulator [Lactobacillus
          fermentum CECT 5716]
          Length = 66

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G+IKW+N +KGYGFI    S E+GDDVF+H SA+   G   L EGQ VT+D V+N  
Sbjct: 1  MEQGTIKWFNDEKGYGFI----SREAGDDVFVHFSAIQGDGFKTLEEGQSVTFD-VENGD 55

Query: 62 NGKYSA 67
           G  +A
Sbjct: 56 RGLQAA 61


>gi|21957922|gb|AAM84743.1|AE013720_7 cold shock protein [Yersinia pestis KIM 10]
 gi|45435809|gb|AAS61366.1| putative cold shock protein [Yersinia pestis biovar Microtus str.
          91001]
          Length = 84

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++ + N A G
Sbjct: 20 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFE-ITNGAKG 75

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 76 PSAANVIAI 84


>gi|83950568|ref|ZP_00959301.1| cold shock family protein [Roseovarius nubinhibens ISM]
 gi|83838467|gb|EAP77763.1| cold shock family protein [Roseovarius nubinhibens ISM]
          Length = 68

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L + Q VTYD ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPD---DGGKDVFVHISAVERAGLTGLADNQKVTYD-LEAGRDGR 59

Query: 65 YSAENLKL 72
           SA N+ L
Sbjct: 60 ESAGNIVL 67


>gi|254438790|ref|ZP_05052284.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter
          antarcticus 307]
 gi|198254236|gb|EDY78550.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter
          antarcticus 307]
          Length = 68

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE     G DVF+H SAV  +GL  L + Q VT+D V+   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPE---TGGKDVFVHISAVERSGLTGLADDQKVTFD-VEAGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESAVNLAL 67


>gi|332559893|ref|ZP_08414215.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N]
 gi|332277605|gb|EGJ22920.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N]
          Length = 68

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+++W+N  KG+GF+ P   ++   DVF+H +A+  AG+  L +GQ +TYD ++ D NG+
Sbjct: 4  GTVQWFNATKGFGFVAPAHGSK---DVFVHVTALERAGIHQLNDGQALTYD-METDRNGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESATNLVL 67


>gi|160937355|ref|ZP_02084716.1| hypothetical protein CLOBOL_02246 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439424|gb|EDP17174.1| hypothetical protein CLOBOL_02246 [Clostridium bolteae ATCC
          BAA-613]
          Length = 72

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 3/55 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           +++G++KW+N  KGYGFIT E   E+G D+F+H S +AS G  +L EGQ VT+D
Sbjct: 5  FMNKGTVKWFNSQKGYGFITNE---ENGMDIFVHFSGIASNGFKSLEEGQAVTFD 56


>gi|116252711|ref|YP_768549.1| cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841]
 gi|190892268|ref|YP_001978810.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|209549797|ref|YP_002281714.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|218463687|ref|ZP_03503778.1| cold-shock DNA-binding domain protein [Rhizobium etli Kim 5]
 gi|218510076|ref|ZP_03507954.1| cold-shock DNA-binding domain protein [Rhizobium etli Brasil 5]
 gi|218660216|ref|ZP_03516146.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771]
 gi|218674774|ref|ZP_03524443.1| cold-shock DNA-binding domain protein [Rhizobium etli GR56]
 gi|241205217|ref|YP_002976313.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|115257359|emb|CAK08454.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|190697547|gb|ACE91632.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|209535553|gb|ACI55488.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|240859107|gb|ACS56774.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|327192667|gb|EGE59605.1| cold shock protein CspA [Rhizobium etli CNPAF512]
          Length = 70

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 46/64 (71%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++K++N DKG+GFITP+G  +   DVF+H SA+ ++G+ +L EGQ VT+D  + D
Sbjct: 1  MATKGTVKFFNQDKGFGFITPDGGAK---DVFVHISALQASGIQSLREGQQVTFD-TEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 RMGK 60


>gi|126729016|ref|ZP_01744831.1| cold shock family protein [Sagittula stellata E-37]
 gi|126710946|gb|EBA09997.1| cold shock family protein [Sagittula stellata E-37]
          Length = 68

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE   E G DVF+H SAV  +GL  L + Q V+Y+ ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYE-LREGRDGR 59

Query: 65 YSAENLKLV 73
            A +LK++
Sbjct: 60 TMASDLKVI 68


>gi|311029190|ref|ZP_07707280.1| cold-shock protein [Bacillus sp. m3-13]
          Length = 67

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N +KG+GFI      E+GDDVF+H SA+ S G  +L EGQ VT+D  Q
Sbjct: 1  MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSEGFKSLDEGQKVTFDVEQ 53


>gi|294677982|ref|YP_003578597.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003]
 gi|294476802|gb|ADE86190.1| cold shock protein CspA-2 [Rhodobacter capsulatus SB 1003]
          Length = 68

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+G    G DVF+H SAV  AGL  L++ Q ++++ +    +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPDG---GGKDVFVHISAVERAGLKALSDNQKISFELISG-RDGR 59

Query: 65 YSAENLKLV 73
           SA +LKL+
Sbjct: 60 SSAGDLKLL 68


>gi|86358177|ref|YP_470069.1| cold shock protein [Rhizobium etli CFN 42]
 gi|86282279|gb|ABC91342.1| cold shock protein [Rhizobium etli CFN 42]
          Length = 70

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 46/64 (71%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++K++N DKG+GFITP+G  +   DVF+H SA+ ++G+ +L EGQ VT+D  + D
Sbjct: 1  MATKGTVKFFNQDKGFGFITPDGGAK---DVFVHISALQASGIQSLREGQQVTFD-TEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 RMGK 60


>gi|184156018|ref|YP_001844358.1| cold shock protein [Lactobacillus fermentum IFO 3956]
 gi|260662726|ref|ZP_05863620.1| cold shock protein [Lactobacillus fermentum 28-3-CHN]
 gi|183227362|dbj|BAG27878.1| cold shock protein [Lactobacillus fermentum IFO 3956]
 gi|260552807|gb|EEX25806.1| cold shock protein [Lactobacillus fermentum 28-3-CHN]
          Length = 66

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G+IKW+N +KGYGFI    S E+GDDVF+H SA+   G   L EGQ VT+D    D
Sbjct: 1  MEKGTIKWFNDEKGYGFI----SREAGDDVFVHFSAIQGDGFKTLEEGQSVTFDVETGD 55


>gi|187479893|ref|YP_787918.1| cold shock protein [Bordetella avium 197N]
 gi|115424480|emb|CAJ51034.1| cold shock protein [Bordetella avium 197N]
          Length = 68

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N DKGYGFITP+     G DVF H SA+   G  +L EGQ V +D V++ 
Sbjct: 1  MAQKGKVKWFNADKGYGFITPD---SGGTDVFAHFSAIQGRGYRSLNEGQEVEFD-VKDG 56

Query: 61 ANGKYSAE 68
            G  +AE
Sbjct: 57 PKGPQAAE 64


>gi|209542291|ref|YP_002274520.1| cold-shock DNA-binding domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529968|gb|ACI49905.1| cold-shock DNA-binding domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 204

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           RG +KWYN  KG+GFITPE     G D+F+H SA+  +GL  LTEGQ      VQ 
Sbjct: 140 RGVVKWYNATKGFGFITPE---SGGKDIFVHASALERSGLTGLTEGQTANVQVVQG 192



 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          ++KW+N +KG+GF+  E S  SG DVFLH +A+A++G  +++ G  +     Q 
Sbjct: 37 AVKWFNSEKGFGFV--ELSDGSG-DVFLHANALATSGHDSVSPGTTLVVRIGQG 87


>gi|253579494|ref|ZP_04856763.1| cold-shock protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848995|gb|EES76956.1| cold-shock protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 66

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFIT E     G DVF+H SA+   G  +L EGQ VTYD  +  A
Sbjct: 1  MNKGTVKWFNAEKGYGFITGE----DGADVFVHFSAINGEGFKSLEEGQAVTYDLTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGMQAANVTKL 66


>gi|126733685|ref|ZP_01749432.1| cold shock protein CspA-related protein, putative [Roseobacter
          sp. CCS2]
 gi|126716551|gb|EBA13415.1| cold shock protein CspA-related protein, putative [Roseobacter
          sp. CCS2]
          Length = 68

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G ++   DVF+H SAV  +GL  L + Q VT+D V+   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERSGLTGLQDDQKVTFD-VEAGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESAVNLAL 67


>gi|86140176|ref|ZP_01058738.1| cold shock family protein [Roseobacter sp. MED193]
 gi|85823113|gb|EAQ43326.1| cold shock family protein [Roseobacter sp. MED193]
          Length = 68

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G ++   DVF+H SAV  +GL  L + Q VT+D ++   +G+
Sbjct: 4  GTVKWFNSTKGFGFIAPDGGSK---DVFVHISAVERSGLTGLADNQKVTFD-IEPGRDGR 59

Query: 65 YSAENLKL 72
           SA NL+L
Sbjct: 60 ESAVNLEL 67


>gi|323702916|ref|ZP_08114574.1| cold-shock DNA-binding domain protein [Desulfotomaculum
          nigrificans DSM 574]
 gi|323532174|gb|EGB22055.1| cold-shock DNA-binding domain protein [Desulfotomaculum
          nigrificans DSM 574]
          Length = 65

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI      E+G DVF+H SA+ + G   L EGQLV +D V+  A G
Sbjct: 2  QGKVKWFNANKGYGFI----EAETGSDVFVHYSAIQAEGYRTLEEGQLVQFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|15965657|ref|NP_386010.1| putative cold shock-like transcription regulator protein
          [Sinorhizobium meliloti 1021]
 gi|150396829|ref|YP_001327296.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|307315974|ref|ZP_07595463.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307321238|ref|ZP_07600640.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|15074838|emb|CAC46483.1| Cold shock protein [Sinorhizobium meliloti 1021]
 gi|150028344|gb|ABR60461.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
 gi|306893140|gb|EFN23924.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306898377|gb|EFN29075.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 70

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +K++N DKG+GFITPEG ++   DVF+H +AV +AGL  L +GQ V++D  + D
Sbjct: 1  MATKGIVKFFNQDKGFGFITPEGGSK---DVFVHITAVQAAGLTTLNDGQEVSFD-TEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 RMGK 60


>gi|313497351|gb|ADR58717.1| Cold-shock domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 69

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 4/56 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           +G++KW+N +KGYGFITP    ESG D+F+H  A+   G  +L EGQ VT++ VQ
Sbjct: 5  QKGTVKWFNDEKGYGFITP----ESGPDLFVHFRAIEGNGFKSLKEGQQVTFEAVQ 56


>gi|254454339|ref|ZP_05067776.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus
           238]
 gi|198268745|gb|EDY93015.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus
           238]
          Length = 152

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI PE     G DVF+H SAV  +GL  L + Q VT+D V+   +G+
Sbjct: 88  GTVKWFNTTKGFGFIAPE---TGGKDVFVHISAVERSGLTGLADDQKVTFD-VEAGRDGR 143

Query: 65  YSAENLKL 72
            SA NL L
Sbjct: 144 ESAVNLAL 151


>gi|197106500|ref|YP_002131877.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
 gi|196479920|gb|ACG79448.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
          Length = 69

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NP KG+GFI P+     G DVF+H SAV  + L +L+EGQ V ++  ++  +GK
Sbjct: 4  GTVKWFNPAKGFGFIQPD---NGGPDVFVHISAVERSTLGSLSEGQKVGFELERDQRSGK 60

Query: 65 YSAENLK 71
           SA  L+
Sbjct: 61 TSAGQLQ 67


>gi|51595435|ref|YP_069626.1| cold shock protein CspE [Yersinia pseudotuberculosis IP 32953]
 gi|108808497|ref|YP_652413.1| cold shock protein CspE [Yersinia pestis Antiqua]
 gi|145599922|ref|YP_001163998.1| cold shock protein CspE [Yersinia pestis Pestoides F]
 gi|149365504|ref|ZP_01887539.1| putative cold shock protein [Yersinia pestis CA88-4125]
 gi|153947984|ref|YP_001401920.1| cold shock protein CspE [Yersinia pseudotuberculosis IP 31758]
 gi|161484846|ref|NP_668492.2| cold shock protein CspE [Yersinia pestis KIM 10]
 gi|161511416|ref|NP_992489.2| cold shock protein CspE [Yersinia pestis biovar Microtus str.
          91001]
 gi|162418633|ref|YP_001606345.1| cold shock protein CspE [Yersinia pestis Angola]
 gi|165925190|ref|ZP_02221022.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165937609|ref|ZP_02226171.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166008509|ref|ZP_02229407.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166212360|ref|ZP_02238395.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167398559|ref|ZP_02304083.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167422542|ref|ZP_02314295.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167423259|ref|ZP_02315012.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|170025252|ref|YP_001721757.1| cold shock protein CspE [Yersinia pseudotuberculosis YPIII]
 gi|186894465|ref|YP_001871577.1| cold shock protein CspE [Yersinia pseudotuberculosis PB1/+]
 gi|218929676|ref|YP_002347551.1| cold shock protein CspE [Yersinia pestis CO92]
 gi|229838141|ref|ZP_04458300.1| DNA-binding transcriptional repressor [Yersinia pestis biovar
          Orientalis str. PEXU2]
 gi|229895932|ref|ZP_04511102.1| DNA-binding transcriptional repressor [Yersinia pestis Pestoides
          A]
 gi|229898749|ref|ZP_04513894.1| DNA-binding transcriptional repressor [Yersinia pestis biovar
          Orientalis str. India 195]
 gi|229901480|ref|ZP_04516602.1| DNA-binding transcriptional repressor [Yersinia pestis Nepal516]
 gi|238755048|ref|ZP_04616396.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473]
 gi|238758047|ref|ZP_04619228.1| hypothetical protein yaldo0001_9270 [Yersinia aldovae ATCC 35236]
 gi|238762891|ref|ZP_04623859.1| Cold shock-like protein cspE [Yersinia kristensenii ATCC 33638]
 gi|238785727|ref|ZP_04629701.1| Cold shock-like protein cspE [Yersinia bercovieri ATCC 43970]
 gi|238791629|ref|ZP_04635267.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909]
 gi|238795419|ref|ZP_04638934.1| Cold shock-like protein cspE [Yersinia mollaretii ATCC 43969]
 gi|270263689|ref|ZP_06191958.1| Cold shock-like protein CspE [Serratia odorifera 4Rx13]
 gi|270489665|ref|ZP_06206739.1| cold shock protein CspE [Yersinia pestis KIM D27]
 gi|284988376|ref|YP_003422335.1| cold shock protein [Yersinia pestis Nepal516]
 gi|293392426|ref|ZP_06636748.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
 gi|51588717|emb|CAH20328.1| putative cold shock protein [Yersinia pseudotuberculosis IP
          32953]
 gi|108780410|gb|ABG14468.1| cold shock protein E (CspE) [Yersinia pestis Antiqua]
 gi|115348287|emb|CAL21218.1| putative cold shock protein [Yersinia pestis CO92]
 gi|145211618|gb|ABP41025.1| cold shock protein E (CspE) [Yersinia pestis Pestoides F]
 gi|149291917|gb|EDM41991.1| putative cold shock protein [Yersinia pestis CA88-4125]
 gi|152959479|gb|ABS46940.1| cold shock DNA-binding domain protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|162351448|gb|ABX85396.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
 gi|165914359|gb|EDR32974.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165922797|gb|EDR39948.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165992891|gb|EDR45192.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166206291|gb|EDR50771.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166958556|gb|EDR55577.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167051063|gb|EDR62471.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167057429|gb|EDR67175.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169751786|gb|ACA69304.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186697491|gb|ACC88120.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229681409|gb|EEO77503.1| DNA-binding transcriptional repressor [Yersinia pestis Nepal516]
 gi|229688297|gb|EEO80368.1| DNA-binding transcriptional repressor [Yersinia pestis biovar
          Orientalis str. India 195]
 gi|229694507|gb|EEO84554.1| DNA-binding transcriptional repressor [Yersinia pestis biovar
          Orientalis str. PEXU2]
 gi|229700855|gb|EEO88884.1| DNA-binding transcriptional repressor [Yersinia pestis Pestoides
          A]
 gi|238698902|gb|EEP91651.1| Cold shock-like protein cspE [Yersinia kristensenii ATCC 33638]
 gi|238703801|gb|EEP96337.1| hypothetical protein yaldo0001_9270 [Yersinia aldovae ATCC 35236]
 gi|238706752|gb|EEP99121.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473]
 gi|238713367|gb|EEQ05405.1| Cold shock-like protein cspE [Yersinia bercovieri ATCC 43970]
 gi|238720538|gb|EEQ12339.1| Cold shock-like protein cspE [Yersinia mollaretii ATCC 43969]
 gi|238729245|gb|EEQ20761.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909]
 gi|270042573|gb|EFA15668.1| Cold shock-like protein CspE [Serratia odorifera 4Rx13]
 gi|270338169|gb|EFA48946.1| cold shock protein CspE [Yersinia pestis KIM D27]
 gi|291425080|gb|EFE98287.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
          Length = 69

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++ + N A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFE-ITNGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|295696558|ref|YP_003589796.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
 gi|295412160|gb|ADG06652.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
          Length = 66

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFITP+   + G DVF+H SA+   G   L EGQ V YD V+    G
Sbjct: 2  KGKVKWFNAEKGYGFITPD---DGGKDVFVHYSAIQEEGFRTLEEGQDVEYDIVEG-PRG 57

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 58 PQAANVVKL 66


>gi|163744665|ref|ZP_02152025.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
 gi|161381483|gb|EDQ05892.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
          Length = 68

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D+F+H SAV  AGL  L + Q VT+D V+   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPD---TGGKDIFVHISAVERAGLTGLADNQKVTFD-VEAGRDGR 59

Query: 65 YSAENLKL 72
           SA N+ L
Sbjct: 60 ESASNIAL 67


>gi|251799709|ref|YP_003014440.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
 gi|247547335|gb|ACT04354.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
          Length = 65

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     TE G DVF+H SA+ + G   L EGQ V +D V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFI----ETEQGGDVFVHFSAIQAEGFKTLEEGQAVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|219881898|gb|ACL52164.1| cold response protein 1 [Metarhizium anisopliae]
 gi|322693450|gb|EFY85310.1| cold response protein 1 [Metarhizium acridum CQMa 102]
 gi|322707280|gb|EFY98859.1| cold response protein 1 [Metarhizium anisopliae ARSEF 23]
          Length = 70

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KGYGFITP    ESG D+F+H  A+  +G  +L EGQ VT++ VQ
Sbjct: 7  GVVKWFNEEKGYGFITP----ESGPDLFVHFRAIEGSGFRSLKEGQAVTFEAVQ 56


>gi|58039299|ref|YP_191263.1| cold shock protein [Gluconobacter oxydans 621H]
 gi|58001713|gb|AAW60607.1| Cold shock protein [Gluconobacter oxydans 621H]
          Length = 68

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI    S++   DVF+H SA+  AGL NL EGQ V+Y+ +++  NG+
Sbjct: 4  GTVKWFNATKGFGFIQ---SSDGTTDVFVHISALEKAGLQNLNEGQQVSYE-IEDGRNGR 59

Query: 65 YSAENLK 71
           SA +LK
Sbjct: 60 KSAGSLK 66


>gi|134297915|ref|YP_001111411.1| cold-shock DNA-binding domain-containing protein
          [Desulfotomaculum reducens MI-1]
 gi|134050615|gb|ABO48586.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens
          MI-1]
          Length = 66

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI     TE G DVF+H SA+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQKGTVKWFNAEKGYGFI----ETEEGSDVFVHFSAITGDGFKTLEEGQRVSFNVVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  + E +KL
Sbjct: 56 RGPQAEEVVKL 66


>gi|299134245|ref|ZP_07027438.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 gi|298590992|gb|EFI51194.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
          Length = 71

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N ++GYGFI P+   + G DVF+H +AV  AGL NLTEGQ +T++ V+ D
Sbjct: 1  MAMTGVVKFFNAERGYGFIKPD---DGGRDVFVHITAVEKAGLKNLTEGQHITFE-VEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KKGK 60


>gi|169334115|ref|ZP_02861308.1| hypothetical protein ANASTE_00508 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258832|gb|EDS72798.1| hypothetical protein ANASTE_00508 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 70

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 4/63 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KGYGFI+ +   E+G+DVF+H SA++  G  +L EGQ VTYD V+ D 
Sbjct: 1  MNNGTVKWFNQEKGYGFISND---ETGEDVFVHYSAISGEGFKSLNEGQKVTYD-VEADT 56

Query: 62 NGK 64
            K
Sbjct: 57 KNK 59


>gi|116249765|ref|YP_765603.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|115254413|emb|CAK04052.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
          viciae 3841]
          Length = 68

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KG GFI P+   +   DVF+H SAV  AG   L +GQ + Y+ V++  +GK
Sbjct: 4  GTVKWFDATKGSGFIQPD---DGSIDVFVHISAVERAGRLGLNDGQKIAYELVKDRMSGK 60

Query: 65 YSAENLK 71
           SA+NL+
Sbjct: 61 MSADNLQ 67


>gi|116511521|ref|YP_808737.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
          subsp. cremoris SK11]
 gi|125624635|ref|YP_001033118.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|2370256|emb|CAA71254.1| cold shock protein [Lactococcus lactis]
 gi|3850773|emb|CAA76695.1| cold shock protein B [Lactococcus lactis subsp. cremoris MG1363]
 gi|116107175|gb|ABJ72315.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
          cremoris SK11]
 gi|124493443|emb|CAL98417.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|300071426|gb|ADJ60826.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris
          NZ9000]
          Length = 66

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 37/52 (71%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+NPDKG+GFIT    +E G DVF H S + ++G   L EGQ VT+D
Sbjct: 3  KGTVKWFNPDKGFGFIT----SEDGQDVFAHFSQIQTSGFKTLDEGQKVTFD 50


>gi|162149571|ref|YP_001604032.1| cold shock protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544805|ref|YP_002277034.1| cold-shock DNA-binding domain-containing protein
          [Gluconacetobacter diazotrophicus PAl 5]
 gi|148530010|gb|ABQ82211.1| cold shock protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788148|emb|CAP57753.1| putative cold shock protein [Gluconacetobacter diazotrophicus PAl
          5]
 gi|209532482|gb|ACI52419.1| cold-shock DNA-binding domain protein [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 68

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P    +   DVF+H SAV  AGL  L EGQ ++Y+ ++   N K
Sbjct: 4  GTVKWFNSQKGFGFIQP---NDGSSDVFVHISAVERAGLRGLNEGQTISYE-LETGRNNK 59

Query: 65 YSAENLK 71
           SA NLK
Sbjct: 60 TSAVNLK 66


>gi|302871348|ref|YP_003839984.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          obsidiansis OB47]
 gi|312128141|ref|YP_003993015.1| cold-shock DNA-binding domain-containing protein
          [Caldicellulosiruptor hydrothermalis 108]
 gi|312134639|ref|YP_004001977.1| cold-shock DNA-binding domain-containing protein
          [Caldicellulosiruptor owensensis OL]
 gi|312622949|ref|YP_004024562.1| cold-shock DNA-binding domain-containing protein
          [Caldicellulosiruptor kronotskyensis 2002]
 gi|312794129|ref|YP_004027052.1| cold-shock DNA-binding domain-containing protein
          [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|302574207|gb|ADL41998.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          obsidiansis OB47]
 gi|311774690|gb|ADQ04177.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          owensensis OL]
 gi|311778160|gb|ADQ07646.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|312181269|gb|ADQ41439.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312203416|gb|ADQ46743.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          kronotskyensis 2002]
          Length = 66

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +KW+NP+KGYGFI    S ++G+DVF+H SA+   G   L EGQ V +D V+ +
Sbjct: 2  RGRVKWFNPEKGYGFI----SADNGEDVFVHFSAINMEGYKTLAEGQTVEFDIVKTE 54


>gi|162147665|ref|YP_001602126.1| cold shock-like protein cspE [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786242|emb|CAP55824.1| Cold shock-like protein cspE [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 226

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           RG +KWYN  KG+GFITPE     G D+F+H SA+  +GL  LTEGQ      VQ 
Sbjct: 162 RGVVKWYNATKGFGFITPE---SGGKDIFVHASALERSGLTGLTEGQTANVQVVQG 214



 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           ++KW+N +KG+GF+  E S  SG DVFLH +A+A++G  +++ G  +     Q 
Sbjct: 59  AVKWFNSEKGFGFV--ELSDGSG-DVFLHANALATSGHDSVSPGTTLVVRIGQG 109


>gi|326388755|ref|ZP_08210344.1| cold-shock DNA-binding domain protein [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326206779|gb|EGD57607.1| cold-shock DNA-binding domain protein [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 68

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKGYGFI PE     G+D F+H SAV  AG+  L++ Q ++Y+ V+ D  GK
Sbjct: 4  GTVKFFNTDKGYGFIAPE---NGGNDSFVHFSAVQQAGMATLSKDQRLSYE-VETDRRGK 59

Query: 65 YSAENL 70
           SA NL
Sbjct: 60 QSAINL 65


>gi|294498464|ref|YP_003562164.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294500157|ref|YP_003563857.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295705519|ref|YP_003598594.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294348401|gb|ADE68730.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294350094|gb|ADE70423.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294803178|gb|ADF40244.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 67

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N DKG+GFI  EG    GDDVF+H S++   G  +L EGQ VT+D  Q
Sbjct: 1  MEQGTVKWFNADKGFGFIEIEG----GDDVFVHFSSIQGEGFKSLEEGQKVTFDIEQ 53


>gi|222528760|ref|YP_002572642.1| cold-shock DNA-binding domain-containing protein
          [Caldicellulosiruptor bescii DSM 6725]
 gi|222455607|gb|ACM59869.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 66

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +KW+NP+KGYGFI    S ++G+DVF+H SA+   G   L EGQ V +D V+ +
Sbjct: 2  RGKVKWFNPEKGYGFI----SADNGEDVFVHFSAINMEGYKTLAEGQTVEFDIVKTE 54


>gi|227822300|ref|YP_002826271.1| putative cold shock protein CspA [Sinorhizobium fredii NGR234]
 gi|227341300|gb|ACP25518.1| putative cold shock protein CspA [Sinorhizobium fredii NGR234]
          Length = 70

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 3/55 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M  +G +K++N DKG+GFITP+G  +   DVF+H SAV +AGL  L +GQ V++D
Sbjct: 1  MATKGIVKFFNQDKGFGFITPDGGAK---DVFVHISAVQAAGLATLKDGQQVSFD 52


>gi|56695352|ref|YP_165700.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
 gi|56677089|gb|AAV93755.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
          Length = 68

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE   E G DVF+H SAV  +GL  L + Q V+Y+ ++   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYE-LKPGRDGR 59

Query: 65 YSAENLKLV 73
           SA +LKL+
Sbjct: 60 ESAVDLKLL 68


>gi|294500155|ref|YP_003563855.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295705517|ref|YP_003598592.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294350092|gb|ADE70421.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294803176|gb|ADF40242.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N +KG+GFI      E+GDDVF+H SA+ S G  +L EGQ VT+D  Q
Sbjct: 1  MEQGKVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSEGFKSLDEGQAVTFDVEQ 53


>gi|294499467|ref|YP_003563167.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295704817|ref|YP_003597892.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294349404|gb|ADE69733.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294802476|gb|ADF39542.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N +KG+GFI      E+GDDVF+H SA+ S G  +L EGQ VT+D
Sbjct: 1  MEKGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSEGFKSLDEGQAVTFD 50


>gi|84499705|ref|ZP_00997993.1| cold shock protein CspA [Oceanicola batsensis HTCC2597]
 gi|84392849|gb|EAQ05060.1| cold shock protein CspA [Oceanicola batsensis HTCC2597]
          Length = 68

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P    +   D+F+H SA+  AGL  L +GQ VT+D +++  +G+
Sbjct: 4  GTVKWFNSTKGFGFIEP---ADGKKDIFVHISALERAGLSELKDGQAVTFD-IEDGRDGR 59

Query: 65 YSAENLKLV 73
           SA NL L 
Sbjct: 60 SSAANLALA 68


>gi|148546265|ref|YP_001266367.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida F1]
 gi|148510323|gb|ABQ77183.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
          Length = 69

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KGYGFITP    ESG D+F+H  A+  +G  +L EGQ VT++ VQ
Sbjct: 7  GTVKWFNDEKGYGFITP----ESGPDLFVHFRAIEGSGFKSLKEGQKVTFEAVQ 56


>gi|209886327|ref|YP_002290184.1| putative cold-shock' DNA-binding domain [Oligotropha
          carboxidovorans OM5]
 gi|209874523|gb|ACI94319.1| putative cold-shock' DNA-binding domain [Oligotropha
          carboxidovorans OM5]
          Length = 71

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL NL EGQ +T++ V+ D
Sbjct: 1  MAMTGTVKFFNAERGYGFIKPD---DGGRDVFVHITAVERAGLKNLVEGQQITFE-VEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KKGK 60


>gi|304385436|ref|ZP_07367781.1| cold shock protein CspA [Pediococcus acidilactici DSM 20284]
 gi|304328643|gb|EFL95864.1| cold shock protein CspA [Pediococcus acidilactici DSM 20284]
          Length = 69

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 4/60 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ +G++KW+N DKG+GFIT     E G DVF+H SA+ S G   L EGQ V++D  ++D
Sbjct: 3  IMEQGTVKWFNADKGFGFIT----REDGSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESD 58


>gi|220932483|ref|YP_002509391.1| putative cold-shock DNA-binding domain protein [Halothermothrix
          orenii H 168]
 gi|219993793|gb|ACL70396.1| putative cold-shock DNA-binding domain protein [Halothermothrix
          orenii H 168]
          Length = 67

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M++ G +KW++P KGYGFI      + GDDVF+H SA+   G   L EGQ V ++ V+++
Sbjct: 1  MIYSGKVKWFDPKKGYGFI----ERDEGDDVFVHFSAIKEEGFKTLEEGQEVEFEIVESE 56

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 57 -RGPQAANVVKL 67


>gi|153813260|ref|ZP_01965928.1| hypothetical protein RUMOBE_03677 [Ruminococcus obeum ATCC 29174]
 gi|149830673|gb|EDM85764.1| hypothetical protein RUMOBE_03677 [Ruminococcus obeum ATCC 29174]
 gi|295108549|emb|CBL22502.1| cold-shock DNA-binding protein family [Ruminococcus obeum A2-162]
          Length = 66

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFIT E     G DVF+H SA+   G  +L EGQ VTYD  +  A
Sbjct: 1  MNKGTVKWFNAEKGYGFITGE----DGADVFVHFSAINGEGFKSLDEGQAVTYDLTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGMQAANVTKL 66


>gi|193875878|gb|ACF24575.1| glycine-rich nucleic acid binding protein [Gymnochlora stellata]
          Length = 290

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+ KW+N  KGYGFI P+   E  DD+F+H++A+ + G  +L EG+ V +D V+ DA G+
Sbjct: 26 GTCKWFNTVKGYGFILPQ---EGKDDIFVHQTAIKAVGFRSLAEGEQVEFD-VEVDATGR 81

Query: 65 YSAENL 70
            A N+
Sbjct: 82 KKARNV 87


>gi|56698445|ref|YP_168819.1| cold shock protein CspA [Ruegeria pomeroyi DSS-3]
 gi|56680182|gb|AAV96848.1| cold shock protein CspA [Ruegeria pomeroyi DSS-3]
          Length = 68

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE   +   DVF+H SA+  +G+  L +GQ VT+D +++  +G+
Sbjct: 4  GTVKWFNSQKGFGFIAPE---QGSKDVFVHISALERSGIQKLDDGQAVTFD-IESGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESAINLAL 67


>gi|15966083|ref|NP_386436.1| putative cold shock transcription regulator protein
          [Sinorhizobium meliloti 1021]
 gi|150397438|ref|YP_001327905.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|307305637|ref|ZP_07585384.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307317640|ref|ZP_07597079.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|15075353|emb|CAC46909.1| Putative cold shock transcription regulator [Sinorhizobium
          meliloti 1021]
 gi|150028953|gb|ABR61070.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
 gi|306896798|gb|EFN27545.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306902340|gb|EFN32936.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 71

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 5/74 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI PE     G D+F+H SAV ++GL  LTE Q V++D  + D
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPE---NGGADIFVHISAVQASGLSGLTENQKVSFD-TEPD 56

Query: 61 ANGK-YSAENLKLV 73
            GK   A NL++V
Sbjct: 57 RRGKGPKAVNLQIV 70


>gi|328957164|ref|YP_004374550.1| cold-shock protein [Carnobacterium sp. 17-4]
 gi|328673488|gb|AEB29534.1| cold-shock protein [Carnobacterium sp. 17-4]
          Length = 66

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N +KG+GFI  EG+    DDVF+H SA+ S G  +L EGQ VT+D
Sbjct: 1  MEQGTVKWFNAEKGFGFIEREGA----DDVFVHFSAIQSEGFKSLEEGQAVTFD 50


>gi|126724626|ref|ZP_01740469.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2150]
 gi|126705790|gb|EBA04880.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2150]
          Length = 68

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+     G+DVF+H SAV  AGL  L + Q VTY+ ++   +GK
Sbjct: 4  GTVKWFNSTKGYGFIAPDAG---GNDVFVHISAVERAGLTGLKDNQKVTYE-LETGRDGK 59

Query: 65 YSAENLKLV 73
           SA +L L 
Sbjct: 60 QSAGDLALA 68


>gi|317127375|ref|YP_004093657.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
 gi|315472323|gb|ADU28926.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
          Length = 66

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N +KG+GFI  EG    GDDVF+H SA+   G  +L EGQ VT+D  Q
Sbjct: 1  MQQGTVKWFNAEKGFGFIEVEG----GDDVFVHFSAIQGEGFKSLDEGQAVTFDVEQ 53


>gi|157369432|ref|YP_001477421.1| cold shock protein CspE [Serratia proteamaculans 568]
 gi|157321196|gb|ABV40293.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
          Length = 69

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++  Q
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFEITQ 56


>gi|300769133|ref|ZP_07079022.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|300493373|gb|EFK28552.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
          Length = 88

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N DKG+GFIT E     G DVF+H SA+ + G   L EGQ VTYD  Q D
Sbjct: 22 IMKNGTVKWFNADKGFGFITGE----DGTDVFVHFSAIQTDGFKTLDEGQKVTYDEEQGD 77


>gi|238898407|ref|YP_002924088.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Candidatus Hamiltonella defensa 5AT
          (Acyrthosiphon pisum)]
 gi|229466166|gb|ACQ67940.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Candidatus Hamiltonella defensa 5AT
          (Acyrthosiphon pisum)]
          Length = 72

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +GS+KW+N  KG+GFITP    +   DVF+H SA+ S+G   L EGQ+V +  ++N A 
Sbjct: 6  QKGSVKWFNESKGFGFITP---ADGSKDVFVHFSAIDSSGFKTLGEGQMVEFS-IENGAK 61

Query: 63 GKYSAENLKLV 73
          G  SA N+ ++
Sbjct: 62 GP-SAANVSVI 71


>gi|254474468|ref|ZP_05087854.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp.
          R11]
 gi|214028711|gb|EEB69546.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp.
          R11]
          Length = 68

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+     G DVF+H SAV  +GL  L + Q V Y+ +Q   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPD---SGGSDVFVHISAVERSGLTGLADNQKVNYE-LQPGRDGR 59

Query: 65 YSAENLKLV 73
           SA NL+LV
Sbjct: 60 ESAVNLELV 68


>gi|320540138|ref|ZP_08039793.1| putative cold-shock DNA-binding domain-containing protein
          [Serratia symbiotica str. Tucson]
 gi|320029804|gb|EFW11828.1| putative cold-shock DNA-binding domain-containing protein
          [Serratia symbiotica str. Tucson]
          Length = 69

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++ + N A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQHVEFE-ITNGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|329940593|ref|ZP_08289874.1| cold shock protein [Streptomyces griseoaurantiacus M045]
 gi|329300654|gb|EGG44551.1| cold shock protein [Streptomyces griseoaurantiacus M045]
          Length = 67

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H SA+ S+G   L EGQ VT+D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSAINSSGFRELQEGQAVTFDVTQGQKGPQ 60

Query: 65 YSAENLKLV 73
            AEN+ LV
Sbjct: 61 --AENINLV 67


>gi|332295652|ref|YP_004437575.1| cold-shock DNA-binding domain protein [Thermodesulfobium
          narugense DSM 14796]
 gi|332178755|gb|AEE14444.1| cold-shock DNA-binding domain protein [Thermodesulfobium
          narugense DSM 14796]
          Length = 70

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFI+   +   G+DVF+H SA+ S G  +L EGQ VT+D  ++  
Sbjct: 1  MNKGTVKWFNAEKGYGFIS---NANGGEDVFVHFSAIVSDGFKSLNEGQQVTFDIEKDPK 57

Query: 62 NGK 64
          N K
Sbjct: 58 NSK 60


>gi|309389742|gb|ADO77622.1| cold-shock DNA-binding protein family [Halanaerobium praevalens
          DSM 2228]
          Length = 67

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          MV+ G++KW++  KGYGFI      E GDDVF+H SA+   G   L EGQ V ++ V+ D
Sbjct: 1  MVYTGNVKWFDEKKGYGFI----EREDGDDVFVHFSALQQEGFKTLEEGQEVEFEIVEGD 56

Query: 61 ANGKYSAENLKLV 73
             +  AEN++++
Sbjct: 57 RGPQ--AENVEVI 67


>gi|255505169|ref|ZP_05344871.3| putative cold shock protein [Bryantella formatexigens DSM 14469]
 gi|255269407|gb|EET62612.1| putative cold shock protein [Bryantella formatexigens DSM 14469]
          Length = 91

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFIT     E G DVF+H SA+   G  +L EGQ V+YD  +  A
Sbjct: 26 MNKGTVKWFNAEKGYGFITG----EDGADVFVHFSAIQGEGFKSLEEGQAVSYDLTEG-A 80

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 81 RGMQAANVVKL 91


>gi|13472379|ref|NP_103946.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|260467123|ref|ZP_05813302.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|319781908|ref|YP_004141384.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|14023125|dbj|BAB49732.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
 gi|259029135|gb|EEW30432.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|317167796|gb|ADV11334.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 70

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N  KG+GFITP+G  +   DVF+H SA+ ++GL  L +GQ VT+D V+ D
Sbjct: 1  MAQTGTVKFFNATKGFGFITPDGGAK---DVFVHISAIEASGLRTLVDGQKVTFD-VEPD 56

Query: 61 ANGK-YSAENLK 71
            GK   A NL+
Sbjct: 57 RMGKGPKAVNLR 68


>gi|163842703|ref|YP_001627107.1| ATP/GTP-binding motif-containing protein [Brucella suis ATCC
          23445]
 gi|163673426|gb|ABY37537.1| ATP/GTP-binding site motif A (P-loop) protein [Brucella suis ATCC
          23445]
          Length = 69

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFI P+   +   DVF+H SAV  AGL +L +GQ V Y+ V +  +GK
Sbjct: 4  GTVKFFNSTKGFGFIQPD---DGSSDVFVHISAVERAGLHSLVQGQKVGYEVVADRRSGK 60

Query: 65 YSAENLK 71
           +A NL+
Sbjct: 61 SAAANLE 67


>gi|313906442|ref|ZP_07839778.1| cold-shock DNA-binding domain protein [Eubacterium cellulosolvens
          6]
 gi|313468709|gb|EFR64075.1| cold-shock DNA-binding domain protein [Eubacterium cellulosolvens
          6]
          Length = 66

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +++G++KW+N DKGYGFIT     E G DVF+H SA+   G  +L EGQ V+Y+ V+
Sbjct: 1  MNKGTVKWFNADKGYGFITG----EDGKDVFVHFSAIQGEGFKSLDEGQSVSYELVE 53


>gi|121711172|ref|XP_001273202.1| cold shock NA binding domain protein [Aspergillus clavatus NRRL 1]
 gi|119401352|gb|EAW11776.1| cold shock NA binding domain protein [Aspergillus clavatus NRRL 1]
          Length = 125

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 4/54 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KW+N +KGYGFITP    E+G+D+F+H  AV   G  +L EGQ VT++ VQ
Sbjct: 62  GTVKWFNDEKGYGFITP----ETGEDLFVHFRAVEGNGFKSLKEGQKVTFEAVQ 111


>gi|39934248|ref|NP_946524.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris CGA009]
 gi|39648096|emb|CAE26616.1| cold shock DNA binding protein [Rhodopseudomonas palustris
          CGA009]
          Length = 86

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 5/75 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +LTEGQ ++++ V+ D
Sbjct: 16 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFE-VEPD 71

Query: 61 ANGK-YSAENLKLVP 74
            GK   A NL + P
Sbjct: 72 KKGKGPKAVNLVISP 86


>gi|220920391|ref|YP_002495692.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219944997|gb|ACL55389.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 242

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KWY+P KG+GF++ +   + G DVF+HRSA+A AGL +L EGQ VT D V+
Sbjct: 178 GTVKWYDPAKGFGFVSVK---DGGKDVFVHRSALARAGLDSLAEGQQVTMDVVE 228



 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
            ++KW+N +KG+GF+      E GD   D FLH  AV +AG  +L  G  +T    Q
Sbjct: 66  ATVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHTDLLPGTRLTVQTAQ 116


>gi|188584960|ref|YP_001916505.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179349647|gb|ACB83917.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 68

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW++P KGYGFI  E   + G+DVF+H SA+   G   L EGQ V ++  Q D   
Sbjct: 2  RGTVKWFDPKKGYGFIEKE---DDGEDVFVHFSAIQQEGFKTLEEGQKVEFEVTQGDKGP 58

Query: 64 KYSAENL 70
          +  AEN+
Sbjct: 59 Q--AENV 63


>gi|160914188|ref|ZP_02076410.1| hypothetical protein EUBDOL_00197 [Eubacterium dolichum DSM 3991]
 gi|158433999|gb|EDP12288.1| hypothetical protein EUBDOL_00197 [Eubacterium dolichum DSM 3991]
          Length = 66

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N +KGYGFIT    T+ G DVF+H S++ + G   L EGQ VT+D V++D
Sbjct: 4  GKVKWFNAEKGYGFIT----TDEGKDVFVHYSSINADGFKTLEEGQAVTFDVVESD 55


>gi|160880994|ref|YP_001559962.1| cold-shock DNA-binding domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160429660|gb|ABX43223.1| cold-shock DNA-binding domain protein [Clostridium
          phytofermentans ISDg]
          Length = 67

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 43/57 (75%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +++G++KW+N  KG+GFIT   ++E+G+DVF+H S +AS G  +L EGQ VT++  +
Sbjct: 1  MNKGTVKWFNAQKGFGFIT---NSETGEDVFVHFSGIASEGFKSLEEGQNVTFEITK 54


>gi|296268070|ref|YP_003650702.1| cold-shock DNA-binding domain-containing protein [Thermobispora
          bispora DSM 43833]
 gi|296090857|gb|ADG86809.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM
          43833]
          Length = 67

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          +G++KW+NPDKG+GFI P+G      DVF+H SA+  +G  NL +GQ V +D V
Sbjct: 3  QGTVKWFNPDKGFGFIAPDGGEP---DVFVHFSAIIGSGYRNLEDGQRVEFDIV 53


>gi|254466858|ref|ZP_05080269.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
 gi|206687766|gb|EDZ48248.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
          Length = 69

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE   + G D+F+H SAV  +GL  L + Q VTY+ ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPE---DGGKDIFVHISAVERSGLTGLADNQKVTYE-LRAGRDGR 59

Query: 65 YSAENLKLV 73
           SA ++ LV
Sbjct: 60 ESAVDIALV 68


>gi|56707866|ref|YP_169762.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU
          S4]
 gi|110670337|ref|YP_666894.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC198]
 gi|115315074|ref|YP_763797.1| cold shock protein [Francisella tularensis subsp. holarctica
          OSU18]
 gi|134301709|ref|YP_001121677.1| cold shock DNA-binding domain-containing protein [Francisella
          tularensis subsp. tularensis WY96-3418]
 gi|187931528|ref|YP_001891512.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|224456944|ref|ZP_03665417.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|254369526|ref|ZP_04985537.1| hypothetical protein FTAG_01407 [Francisella tularensis subsp.
          holarctica FSC022]
 gi|254370361|ref|ZP_04986366.1| hypothetical protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254874681|ref|ZP_05247391.1| cold shock protein [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|54113247|gb|AAV29257.1| NT02FT0936 [synthetic construct]
 gi|56604358|emb|CAG45384.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU
          S4]
 gi|110320670|emb|CAL08767.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC198]
 gi|115129973|gb|ABI83160.1| cold shock protein [Francisella tularensis subsp. holarctica
          OSU18]
 gi|134049486|gb|ABO46557.1| cold shock DNA-binding domain protein [Francisella tularensis
          subsp. tularensis WY96-3418]
 gi|151568604|gb|EDN34258.1| hypothetical protein FTBG_00121 [Francisella tularensis subsp.
          tularensis FSC033]
 gi|157122480|gb|EDO66615.1| hypothetical protein FTAG_01407 [Francisella tularensis subsp.
          holarctica FSC022]
 gi|187712437|gb|ACD30734.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|254840680|gb|EET19116.1| cold shock protein [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|282159046|gb|ADA78437.1| cold shock DNA-binding domain protein [Francisella tularensis
          subsp. tularensis NE061598]
          Length = 67

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 50/72 (69%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFI P+   + G DVF+H SAV +AGL +L EG+ V+++  +N  
Sbjct: 1  MRQGTVKFFNTSKGFGFIEPQ---DGGKDVFVHISAVENAGLSSLREGEKVSFEVEEN-- 55

Query: 62 NGKYSAENLKLV 73
           GK +A N+K +
Sbjct: 56 RGKMAAVNIKSI 67


>gi|291546919|emb|CBL20027.1| cold-shock DNA-binding protein family [Ruminococcus sp. SR1/5]
          Length = 66

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFIT     E G DVF+H SA+   G  +L EGQ V+YD  +  A
Sbjct: 1  MNKGTVKWFNAEKGYGFITG----EDGQDVFVHFSAINGEGFKSLEEGQAVSYDLTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGMQAANVTKL 66


>gi|260425469|ref|ZP_05779449.1| conserved domain protein [Citreicella sp. SE45]
 gi|260423409|gb|EEX16659.1| conserved domain protein [Citreicella sp. SE45]
          Length = 68

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE  +    DVF+H SA+  +GL  L +GQ VT+D V++  +G+
Sbjct: 4  GTVKWFNTTKGFGFIEPENGSR---DVFVHISALQRSGLDRLEDGQKVTFD-VESGRDGR 59

Query: 65 YSAENLKL 72
           +A NL L
Sbjct: 60 ENANNLAL 67


>gi|13472374|ref|NP_103941.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|14023120|dbj|BAB49727.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
          Length = 68

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K+YN  KG+GFI P    + G DVF+H SA+  AG   L EGQ + +D ++ D  G+
Sbjct: 4  GIVKFYNGQKGFGFIQP---ADGGKDVFVHVSALERAGFPGLAEGQKLQFD-LERDGKGR 59

Query: 65 YSAENLKLV 73
           SA NL+L+
Sbjct: 60 ESAANLQLI 68


>gi|157804047|ref|YP_001492596.1| cold shock-like protein [Rickettsia canadensis str. McKiel]
 gi|157785310|gb|ABV73811.1| cold shock-like protein [Rickettsia canadensis str. McKiel]
          Length = 70

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  E     G DVF+H+SAV +AGL++L EGQ V +D    +  GK
Sbjct: 7  GKVKWYNSTKNFGFIEQE---HGGKDVFVHKSAVDAAGLYSLEEGQGVIFDL--EEKQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAVNLRI 69


>gi|221369643|ref|YP_002520739.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131]
 gi|221162695|gb|ACM03666.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131]
          Length = 68

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+G I P   ++   DVF+H +A+  AG+  L +GQ VTYD ++ D NG+
Sbjct: 4  GTVKWFNSTKGFGSIAPAHGSK---DVFVHVTALERAGIRQLNDGQAVTYD-METDRNGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESAMNLVL 67


>gi|163736844|ref|ZP_02144262.1| cold shock family protein [Phaeobacter gallaeciensis BS107]
 gi|163743998|ref|ZP_02151367.1| cold shock family protein [Phaeobacter gallaeciensis 2.10]
 gi|161382758|gb|EDQ07158.1| cold shock family protein [Phaeobacter gallaeciensis 2.10]
 gi|161389448|gb|EDQ13799.1| cold shock family protein [Phaeobacter gallaeciensis BS107]
          Length = 68

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+     G DVF+H SAV  +GL  L + Q VTY+ +Q   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPDA---GGSDVFVHISAVERSGLTGLADNQKVTYE-LQPGRDGR 59

Query: 65 YSAENLKL 72
           SA N++L
Sbjct: 60 ESAVNIEL 67


>gi|49082304|gb|AAT50552.1| PA0456 [synthetic construct]
          Length = 70

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFITP    ESG DVF+H  A+   G   L EGQ V+++ VQ      
Sbjct: 6  GTVKWFNETKGYGFITP----ESGPDVFVHFRAIEGNGFKTLAEGQKVSFEVVQGQKG-- 59

Query: 65 YSAENLKLV 73
            AE ++++
Sbjct: 60 MQAERVQVI 68


>gi|52079019|ref|YP_077810.1| cold-shock protein [Bacillus licheniformis ATCC 14580]
 gi|52784391|ref|YP_090220.1| hypothetical protein BLi00578 [Bacillus licheniformis ATCC 14580]
 gi|319648678|ref|ZP_08002889.1| cold shock-like protein cspLA [Bacillus sp. BT1B_CT2]
 gi|52002230|gb|AAU22172.1| cold-shock protein [Bacillus licheniformis ATCC 14580]
 gi|52346893|gb|AAU39527.1| CspC [Bacillus licheniformis ATCC 14580]
 gi|317389097|gb|EFV69913.1| cold shock-like protein cspLA [Bacillus sp. BT1B_CT2]
          Length = 67

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N +KG+GFI      E+GDDVF+H SA+ S G  +L EGQ VT+D  Q
Sbjct: 1  MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQ 53


>gi|270291153|ref|ZP_06197376.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus
          acidilactici 7_4]
 gi|270280549|gb|EFA26384.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus
          acidilactici 7_4]
          Length = 66

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKG+GFIT     E G DVF+H SA+ S G   L EGQ V++D  ++D
Sbjct: 1  MEQGTVKWFNADKGFGFIT----REDGSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESD 55


>gi|94971382|ref|YP_593430.1| cold-shock DNA-binding protein family protein [Candidatus
          Koribacter versatilis Ellin345]
 gi|94553432|gb|ABF43356.1| cold-shock DNA-binding protein family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 66

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGF+T     +SG+DVF+H SA+ S G  +L EGQ V++  V+   
Sbjct: 1  MEQGTVKWFNDAKGYGFLT----RQSGEDVFVHFSAIQSKGFRSLQEGQTVSFSVVKGPK 56

Query: 62 NGKYSAENLKLV 73
               AEN+++V
Sbjct: 57 G--LQAENVQIV 66


>gi|58038548|ref|YP_190512.1| putative transcriptional regulator cold shock protein
           [Gluconobacter oxydans 621H]
 gi|58000962|gb|AAW59856.1| Putative transcriptional regulator cold shock protein
           [Gluconobacter oxydans 621H]
          Length = 228

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG++KWYN  KG+GFITPE     G D+F+H SA+  +GL  L EGQ +    VQ    G
Sbjct: 164 RGTVKWYNATKGFGFITPE---SGGKDIFVHASALERSGLPTLDEGQTINVKVVQGQ-KG 219

Query: 64  KYSAE 68
             +AE
Sbjct: 220 PEAAE 224



 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N +KG+GF+  E S  SG D+FLH +A+ +AG+ N+  G  V     Q    G+  
Sbjct: 64  VKWFNTEKGFGFV--ELSDGSG-DIFLHANALTNAGVSNVNPGATVVVRIGQG-PKGRQV 119

Query: 67  AENLKL 72
           AE L +
Sbjct: 120 AEVLSV 125


>gi|15595653|ref|NP_249147.1| cold-shock protein [Pseudomonas aeruginosa PAO1]
 gi|107099440|ref|ZP_01363358.1| hypothetical protein PaerPA_01000452 [Pseudomonas aeruginosa
          PACS2]
 gi|116054185|ref|YP_788629.1| putative cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152984051|ref|YP_001345954.1| putative cold-shock protein [Pseudomonas aeruginosa PA7]
 gi|218889196|ref|YP_002438060.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58]
 gi|254237314|ref|ZP_04930637.1| hypothetical protein PACG_03384 [Pseudomonas aeruginosa C3719]
 gi|254243552|ref|ZP_04936874.1| hypothetical protein PA2G_04371 [Pseudomonas aeruginosa 2192]
 gi|296386954|ref|ZP_06876453.1| putative cold-shock protein [Pseudomonas aeruginosa PAb1]
 gi|313111918|ref|ZP_07797708.1| putative major cold shock protein [Pseudomonas aeruginosa 39016]
 gi|9946316|gb|AAG03845.1|AE004483_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1]
 gi|115589406|gb|ABJ15421.1| putative major cold shock protein [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126169245|gb|EAZ54756.1| hypothetical protein PACG_03384 [Pseudomonas aeruginosa C3719]
 gi|126196930|gb|EAZ60993.1| hypothetical protein PA2G_04371 [Pseudomonas aeruginosa 2192]
 gi|150959209|gb|ABR81234.1| probable cold-shock protein [Pseudomonas aeruginosa PA7]
 gi|218769419|emb|CAW25179.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58]
 gi|310884210|gb|EFQ42804.1| putative major cold shock protein [Pseudomonas aeruginosa 39016]
          Length = 69

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFITP    ESG DVF+H  A+   G   L EGQ V+++ VQ      
Sbjct: 6  GTVKWFNETKGYGFITP----ESGPDVFVHFRAIEGNGFKTLAEGQKVSFEVVQGQKG-- 59

Query: 65 YSAENLKLV 73
            AE ++++
Sbjct: 60 MQAERVQVI 68


>gi|326692849|ref|ZP_08229854.1| cold shock protein [Leuconostoc argentinum KCTC 3773]
          Length = 66

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N DKG+GFIT E    +GDDVF H SA+ S G   L EGQ VT+D    D
Sbjct: 1  METGTVKWFNGDKGFGFITRE----NGDDVFAHFSAIQSDGFKTLDEGQSVTFDVESGD 55


>gi|222082370|ref|YP_002541735.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221727049|gb|ACM30138.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 67

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKG+GFITPE     G DVF+H SA+   G  +L EG+ V+Y+  Q+   GK
Sbjct: 4  GTVKFFNEDKGFGFITPE---NGGTDVFVHVSALQRGG--SLREGEKVSYELGQDRKTGK 58

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 59 SKAENVSVL 67


>gi|126699928|ref|YP_001088825.1| cold shock protein [Clostridium difficile 630]
 gi|254975893|ref|ZP_05272365.1| cold shock protein [Clostridium difficile QCD-66c26]
 gi|255093279|ref|ZP_05322757.1| cold shock protein [Clostridium difficile CIP 107932]
 gi|255101459|ref|ZP_05330436.1| cold shock protein [Clostridium difficile QCD-63q42]
 gi|255307332|ref|ZP_05351503.1| cold shock protein [Clostridium difficile ATCC 43255]
 gi|255315026|ref|ZP_05356609.1| cold shock protein [Clostridium difficile QCD-76w55]
 gi|255517696|ref|ZP_05385372.1| cold shock protein [Clostridium difficile QCD-97b34]
 gi|255650808|ref|ZP_05397710.1| cold shock protein [Clostridium difficile QCD-37x79]
 gi|255656285|ref|ZP_05401694.1| cold shock protein [Clostridium difficile QCD-23m63]
 gi|260683889|ref|YP_003215174.1| cold shock protein [Clostridium difficile CD196]
 gi|260687549|ref|YP_003218683.1| cold shock protein [Clostridium difficile R20291]
 gi|296450274|ref|ZP_06892035.1| cold shock protein CspA [Clostridium difficile NAP08]
 gi|296878689|ref|ZP_06902694.1| cold shock protein CspA [Clostridium difficile NAP07]
 gi|306520707|ref|ZP_07407054.1| cold shock protein [Clostridium difficile QCD-32g58]
 gi|115251365|emb|CAJ69197.1| Cold shock protein D [Clostridium difficile]
 gi|260210052|emb|CBA64132.1| cold shock protein [Clostridium difficile CD196]
 gi|260213566|emb|CBE05331.1| cold shock protein [Clostridium difficile R20291]
 gi|296261037|gb|EFH07871.1| cold shock protein CspA [Clostridium difficile NAP08]
 gi|296430496|gb|EFH16338.1| cold shock protein CspA [Clostridium difficile NAP07]
          Length = 66

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFI    S ESGDDVF H SA+ ++G  +L EGQ V++D V+  A
Sbjct: 1  MNNGIVKWFNNEKGFGFI----SMESGDDVFAHFSAIQTSGFKSLEEGQKVSFDIVKG-A 55

Query: 62 NGKYSAENLKLV 73
           G   AEN+ ++
Sbjct: 56 RGP-QAENITIL 66


>gi|326692606|ref|ZP_08229611.1| cold-shock DNA-binding protein family protein [Leuconostoc
          argentinum KCTC 3773]
          Length = 66

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N DKG+GFIT E    +GDDVF H SA+ S G   L EGQ VT+D    D
Sbjct: 1  METGTVKWFNGDKGFGFITRE----NGDDVFAHFSAIQSNGFKTLDEGQSVTFDVESGD 55


>gi|221639814|ref|YP_002526076.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          KD131]
 gi|221160595|gb|ACM01575.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          KD131]
          Length = 83

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L++ Q + Y+ +Q+  +G+
Sbjct: 19 GTVKWFNSTKGFGFIAPD---DGGKDVFVHISAVERAGLKGLSDNQKIGYE-LQSGRDGR 74

Query: 65 YSAENLKLV 73
           SA +L+L+
Sbjct: 75 SSAGDLRLL 83


>gi|116334505|ref|YP_796032.1| cold shock protein [Lactobacillus brevis ATCC 367]
 gi|116099852|gb|ABJ65001.1| cold-shock DNA-binding protein family [Lactobacillus brevis ATCC
          367]
          Length = 67

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKGYGFIT     E+G DVF+H SA+ S G   L EGQ V+ D  Q D
Sbjct: 1  MEQGTVKWFNADKGYGFIT----LENGSDVFVHFSAINSEGFKTLEEGQHVSLDVEQGD 55


>gi|294816656|ref|ZP_06775298.1| Cold-shock domain family protein [Streptomyces clavuligerus ATCC
          27064]
 gi|294321471|gb|EFG03606.1| Cold-shock domain family protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 74

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KGYGFITP    ESG D+F+H  A+   G  +L EGQ VT++ VQ
Sbjct: 11 GTVKWFNDEKGYGFITP----ESGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQ 60


>gi|260427897|ref|ZP_05781876.1| conserved domain protein [Citreicella sp. SE45]
 gi|260422389|gb|EEX15640.1| conserved domain protein [Citreicella sp. SE45]
          Length = 68

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE   E G DVF+H SAV  +GL  L + Q V+Y+ ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYE-LKEGRDGR 59

Query: 65 YSAENLKLV 73
            A +LK +
Sbjct: 60 MMASDLKTL 68


>gi|28377002|ref|NP_783894.1| cold shock protein CspL [Lactobacillus plantarum WCFS1]
 gi|254555197|ref|YP_003061614.1| cold shock protein CspL [Lactobacillus plantarum JDM1]
 gi|308179219|ref|YP_003923347.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|2493769|sp|P96349|CSP2_LACPL RecName: Full=Cold shock protein 2
 gi|1869948|emb|CAA70139.1| cold shock protein [Lactobacillus plantarum]
 gi|9968448|emb|CAC06093.1| cold shock protein [Lactobacillus plantarum]
 gi|28269833|emb|CAD62730.1| cold shock protein CspL [Lactobacillus plantarum WCFS1]
 gi|254044124|gb|ACT60917.1| cold shock protein CspL [Lactobacillus plantarum JDM1]
 gi|308044710|gb|ADN97253.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 66

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N DKG+GFIT E     G DVF+H SA+ + G   L EGQ VTYD  Q D
Sbjct: 1  MKNGTVKWFNADKGFGFITGE----DGTDVFVHFSAIQTDGFKTLDEGQKVTYDEEQGD 55


>gi|254420854|ref|ZP_05034578.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
          BAL3]
 gi|196187031|gb|EDX82007.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
          BAL3]
          Length = 67

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NP KGYGFI P+     G DVF+H +AV  AGL  L E   V Y+    +  GK
Sbjct: 4  GTVKWFNPTKGYGFIQPD---SGGSDVFVHVTAVQKAGLQGLDENAKVEYEL--ENQRGK 58

Query: 65 YSAENLKLV 73
           SA +LKL+
Sbjct: 59 TSAIDLKLL 67


>gi|242238529|ref|YP_002986710.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
 gi|242130586|gb|ACS84888.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
          Length = 69

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++ + N A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSTGFKTLAEGQRVEFE-ITNGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|239628310|ref|ZP_04671341.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          bacterium 1_7_47_FAA]
 gi|239518456|gb|EEQ58322.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          bacterium 1_7_47FAA]
          Length = 67

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +++G++KW+N  KG+GFIT E   E+G+D+F+H S +AS G  +L +GQ VT+D
Sbjct: 1  MNKGTVKWFNSQKGFGFITNE---ENGEDIFVHFSGIASNGFKSLEDGQSVTFD 51


>gi|209547434|ref|YP_002279352.1| cold-shock DNA-binding domain-containing protein [Rhizobium
          leguminosarum bv. trifolii WSM2304]
 gi|209538678|gb|ACI58612.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 67

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKG+GFITPE   + G DVF+H SA+   G  +L EG  V++D  Q+   GK
Sbjct: 4  GTVKFFNDDKGFGFITPE---DGGQDVFVHVSALQRGG--SLREGDKVSFDVGQDRKTGK 58

Query: 65 YSAENL 70
            AEN+
Sbjct: 59 SKAENV 64


>gi|254390979|ref|ZP_05006188.1| cold-shock DNA-binding domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
 gi|326445565|ref|ZP_08220299.1| cold-shock DNA-binding domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
 gi|197704675|gb|EDY50487.1| cold-shock DNA-binding domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
          Length = 70

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KGYGFITP    ESG D+F+H  A+   G  +L EGQ VT++ VQ
Sbjct: 7  GTVKWFNDEKGYGFITP----ESGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQ 56


>gi|56962604|ref|YP_174330.1| cold shock protein CspC [Bacillus clausii KSM-K16]
 gi|56908842|dbj|BAD63369.1| cold shock protein CspC [Bacillus clausii KSM-K16]
          Length = 66

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI      E GDDVF+H SA+ S G  +L EGQ V++D ++  A
Sbjct: 1  MEQGTVKWFNAEKGFGFI----EREDGDDVFVHFSAIQSEGFKSLDEGQKVSFD-IEQGA 55

Query: 62 NGKYSA 67
           G  +A
Sbjct: 56 RGAQAA 61


>gi|16077579|ref|NP_388393.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308339|ref|ZP_03590186.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312661|ref|ZP_03594466.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. NCIB
          3610]
 gi|221317584|ref|ZP_03598878.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321860|ref|ZP_03603154.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321314161|ref|YP_004206448.1| cold-shock protein [Bacillus subtilis BSn5]
 gi|729220|sp|P39158|CSPC_BACSU RecName: Full=Cold shock protein CspC
 gi|1230546|dbj|BAA04956.1| cold shock protein [Bacillus subtilis]
 gi|1881321|dbj|BAA19348.1| COLD SHOCK PROTEIN [Bacillus subtilis]
 gi|2393787|gb|AAC45646.1| cold shock protein C [Bacillus subtilis]
 gi|2632812|emb|CAB12319.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482931|dbj|BAI84006.1| cold-shock protein [Bacillus subtilis subsp. natto BEST195]
 gi|320020435|gb|ADV95421.1| cold-shock protein [Bacillus subtilis BSn5]
          Length = 66

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI      E+GDDVF+H SA+ S G  +L EGQ V++D V+  A
Sbjct: 1  MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSDGFKSLDEGQKVSFD-VEQGA 55

Query: 62 NGKYSA 67
           G  +A
Sbjct: 56 RGAQAA 61


>gi|291615324|ref|YP_003525481.1| cold-shock DNA-binding domain protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291585436|gb|ADE13094.1| cold-shock DNA-binding domain protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 68

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP   +  GDD+F H SA+ S+G   LTEGQ V++D
Sbjct: 4  GTVKWFNDSKGFGFITP---SNGGDDLFAHFSAIQSSGFKTLTEGQQVSFD 51


>gi|296532288|ref|ZP_06895027.1| cold shock protein CspA [Roseomonas cervicalis ATCC 49957]
 gi|296267364|gb|EFH13250.1| cold shock protein CspA [Roseomonas cervicalis ATCC 49957]
          Length = 68

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE  ++   DVFLH S V  +GL    EG+ + YD +Q    GK
Sbjct: 4  GTVKWFNATKGYGFIQPEDGSK---DVFLHVSDVQRSGLREPREGERLQYD-LQQGQQGK 59

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 60 VSATNLR 66


>gi|188586205|ref|YP_001917750.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179350892|gb|ACB85162.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 66

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N DKGYGFI  EG     DDVF+H SA+   G   L EGQ V ++ V+    G
Sbjct: 3  KGIVKWFNSDKGYGFIQVEGE----DDVFVHFSAIQEEGFKTLDEGQQVEFNVVEGQ-RG 57

Query: 64 KYSAENLKL 72
            +AE +KL
Sbjct: 58 PQAAEVVKL 66


>gi|116618954|ref|YP_819325.1| cold-shock DNA-binding protein family protein [Leuconostoc
          mesenteroides subsp. mesenteroides ATCC 8293]
 gi|227431399|ref|ZP_03913450.1| CspA family cold shock transcriptional regulator [Leuconostoc
          mesenteroides subsp. cremoris ATCC 19254]
 gi|48727558|gb|AAT46080.1| cold shock protein [Leuconostoc mesenteroides]
 gi|116097801|gb|ABJ62952.1| cold-shock DNA-binding protein family [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
 gi|227352862|gb|EEJ43037.1| CspA family cold shock transcriptional regulator [Leuconostoc
          mesenteroides subsp. cremoris ATCC 19254]
          Length = 66

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KGYGFIT E    SG+DVF H SA+   G   L EGQ VT+D   +D
Sbjct: 1  MEKGTVKWFNGEKGYGFITRE----SGEDVFAHFSAIQGDGFKTLDEGQAVTFDVETSD 55


>gi|297196688|ref|ZP_06914086.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297153348|gb|EFH32317.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 67

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NP+KG+GFI  +G    G DVF+H SA+AS G   L EGQ V +D  Q     +
Sbjct: 4  GTVKWFNPEKGFGFIEQDGG---GPDVFVHYSAIASTGFRELFEGQKVQFDVTQGPKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENV 64


>gi|126739741|ref|ZP_01755432.1| cold shock family protein [Roseobacter sp. SK209-2-6]
 gi|126718973|gb|EBA15684.1| cold shock family protein [Roseobacter sp. SK209-2-6]
          Length = 68

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE   + G DVF+H SAV  +GL  L + Q V+Y+ +Q   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPE---DGGKDVFVHISAVERSGLTGLADNQKVSYE-LQPGRDGR 59

Query: 65 YSAENLKLV 73
           SA +L L+
Sbjct: 60 ESAVDLALL 68


>gi|118497319|ref|YP_898369.1| cold shock protein [Francisella tularensis subsp. novicida U112]
 gi|167627835|ref|YP_001678335.1| cold-shock DNA-binding domain-containing protein [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
 gi|195536005|ref|ZP_03079012.1| cold-shock' DNA-binding domain, putative [Francisella tularensis
          subsp. novicida FTE]
 gi|208779106|ref|ZP_03246452.1| cold-shock' DNA-binding domain protein, putative [Francisella
          novicida FTG]
 gi|241668393|ref|ZP_04755971.1| cold-shock DNA-binding domain-containing protein [Francisella
          philomiragia subsp. philomiragia ATCC 25015]
 gi|254372686|ref|ZP_04988175.1| hypothetical protein FTCG_00251 [Francisella tularensis subsp.
          novicida GA99-3549]
 gi|254374143|ref|ZP_04989625.1| hypothetical protein FTDG_00305 [Francisella novicida GA99-3548]
 gi|254876926|ref|ZP_05249636.1| cold shock protein [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
 gi|118423225|gb|ABK89615.1| cold shock protein, DNA-binding [Francisella novicida U112]
 gi|151570413|gb|EDN36067.1| hypothetical protein FTCG_00251 [Francisella novicida GA99-3549]
 gi|151571863|gb|EDN37517.1| hypothetical protein FTDG_00305 [Francisella novicida GA99-3548]
 gi|167597836|gb|ABZ87834.1| putative cold-shock DNA-binding domain protein [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
 gi|194372482|gb|EDX27193.1| cold-shock' DNA-binding domain, putative [Francisella tularensis
          subsp. novicida FTE]
 gi|208744906|gb|EDZ91204.1| cold-shock' DNA-binding domain protein, putative [Francisella
          novicida FTG]
 gi|254842947|gb|EET21361.1| cold shock protein [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
 gi|328676804|gb|AEB27674.1| Cold shock protein CspC [Francisella cf. novicida Fx1]
          Length = 67

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 50/72 (69%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFI P+   + G DVF+H SAV +AGL +L EG+ ++++  +N  
Sbjct: 1  MRQGTVKFFNTSKGFGFIEPQ---DGGKDVFVHISAVENAGLSSLREGEKISFEVEEN-- 55

Query: 62 NGKYSAENLKLV 73
           GK +A N+K +
Sbjct: 56 RGKMAAVNIKSI 67


>gi|16974801|pdb|1HZ9|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
 gi|16974802|pdb|1HZ9|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
          Length = 66

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KGYGFI  EG    G DVF+H +A+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQRGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQAVSFEIVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|332716945|ref|YP_004444411.1| Cold shock protein cspA [Agrobacterium sp. H13-3]
 gi|325063630|gb|ADY67320.1| Cold shock protein cspA [Agrobacterium sp. H13-3]
          Length = 67

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++  DKG+GFITP+     G DVF+H SAV   G  +L +GQ V+YD  Q+   GK
Sbjct: 4  GTVKFFAQDKGFGFITPD---NGGPDVFVHISAVGFGG--SLQDGQKVSYDVGQDRKTGK 58

Query: 65 YSAENLKLV 73
            AEN+ L+
Sbjct: 59 SKAENVSLI 67


>gi|167768567|ref|ZP_02440620.1| hypothetical protein CLOSS21_03126 [Clostridium sp. SS2/1]
 gi|317498676|ref|ZP_07956968.1| cold-shock' DNA-binding domain-containing protein
          [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710091|gb|EDS20670.1| hypothetical protein CLOSS21_03126 [Clostridium sp. SS2/1]
 gi|291560528|emb|CBL39328.1| cold-shock DNA-binding protein family [butyrate-producing
          bacterium SSC/2]
 gi|316894018|gb|EFV16208.1| cold-shock' DNA-binding domain-containing protein
          [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 66

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI    S ESGDDVF+H SA+   G   L EGQ V+++ ++    GK
Sbjct: 4  GTVKWFNAEKGYGFI----SQESGDDVFVHFSAIQGKGFKTLEEGQSVSFE-IEEGPRGK 58

Query: 65 YSAENLKL 72
           ++   KL
Sbjct: 59 QASNVTKL 66


>gi|254512165|ref|ZP_05124232.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
          bacterium KLH11]
 gi|221535876|gb|EEE38864.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
          bacterium KLH11]
          Length = 68

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   E G DVF+H SAV  +GL  L + Q V+Y+ +Q+  +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVSYE-LQDGRDGR 59

Query: 65 YSAENLK 71
            A +LK
Sbjct: 60 QMAADLK 66


>gi|330994825|ref|ZP_08318747.1| Cold shock-like protein CspE [Gluconacetobacter sp. SXCC-1]
 gi|329758086|gb|EGG74608.1| Cold shock-like protein CspE [Gluconacetobacter sp. SXCC-1]
          Length = 229

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG++KWYN  KG+GFITPE     G D+F+H SA+  +GL  LTEGQ      V+     
Sbjct: 165 RGTVKWYNAAKGFGFITPE---NGGKDIFVHASALERSGLSGLTEGQTANVQVVEGQKGP 221

Query: 64  KYSA 67
           + +A
Sbjct: 222 EAAA 225



 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N +KG+GF+  E S  SG DVFLH +A+   G   +  G  +     Q     + 
Sbjct: 60  TVKWFNSEKGFGFV--ELSDGSG-DVFLHANALNPTGHATVAPGTTLVVQIGQGPKGRQV 116

Query: 66  SA 67
           +A
Sbjct: 117 AA 118


>gi|66045400|ref|YP_235241.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|289673296|ref|ZP_06494186.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae FF5]
 gi|302187611|ref|ZP_07264284.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae 642]
 gi|63256107|gb|AAY37203.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|330898081|gb|EGH29500.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          japonica str. M301072PT]
 gi|330951864|gb|EGH52124.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7]
 gi|330973953|gb|EGH74019.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 70

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 3/52 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
            G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ VT+
Sbjct: 5  QTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDGFKSLKEGQTVTF 53


>gi|218290263|ref|ZP_03494417.1| cold-shock DNA-binding domain protein [Alicyclobacillus
          acidocaldarius LAA1]
 gi|258512161|ref|YP_003185595.1| cold-shock DNA-binding domain-containing protein
          [Alicyclobacillus acidocaldarius subsp. acidocaldarius
          DSM 446]
 gi|218239738|gb|EED06929.1| cold-shock DNA-binding domain protein [Alicyclobacillus
          acidocaldarius LAA1]
 gi|257478887|gb|ACV59206.1| cold-shock DNA-binding domain protein [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 66

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N +KGYGFI      E+GDDVF+H SA+   G   L EGQ VT+D V+
Sbjct: 1  MYEGTVKWFNSEKGYGFI----QVENGDDVFVHYSAIQGHGFKTLDEGQRVTFDIVE 53


>gi|110679166|ref|YP_682173.1| cold shock family protein-related protein, putative [Roseobacter
          denitrificans OCh 114]
 gi|163735034|ref|ZP_02142471.1| cold shock family protein-related protein, putative [Roseobacter
          litoralis Och 149]
 gi|109455282|gb|ABG31487.1| cold shock family protein-related protein, putative [Roseobacter
          denitrificans OCh 114]
 gi|161391816|gb|EDQ16148.1| cold shock family protein-related protein, putative [Roseobacter
          litoralis Och 149]
          Length = 68

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PEG    G DVF+H SAV  +GL  L + Q V ++  +   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPEG---GGSDVFVHISAVERSGLTGLADDQKVDFELTEG-RDGR 59

Query: 65 YSAENLKLV 73
            A +LKL+
Sbjct: 60 QMASDLKLL 68


>gi|192289774|ref|YP_001990379.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
 gi|192283523|gb|ACE99903.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
          Length = 71

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 5/75 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +LTEGQ ++++ V+ D
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFE-VEPD 56

Query: 61 ANGK-YSAENLKLVP 74
            GK   A NL + P
Sbjct: 57 KKGKGPKAVNLVISP 71


>gi|222086272|ref|YP_002544804.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221723720|gb|ACM26876.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 70

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 3/55 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M  +G +K++N DKG+GFITP+G  +   DVF+H SA+ ++G+ +L EGQ VT+D
Sbjct: 1  MATKGIVKFFNQDKGFGFITPDGGAK---DVFVHISALQASGIQSLREGQQVTFD 52


>gi|260575739|ref|ZP_05843736.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
 gi|259022137|gb|EEW25436.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
          Length = 68

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L + Q + ++ +Q+  +GK
Sbjct: 4  GTVKWFNSTKGYGFIAPD---DGGKDVFVHISAVERAGLKGLNDNQKIGFE-LQSGRDGK 59

Query: 65 YSAENLKLV 73
           SA +L+L+
Sbjct: 60 QSAGDLRLL 68


>gi|322833919|ref|YP_004213946.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|321169120|gb|ADW74819.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
          Length = 69

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA++S G   L EGQ V ++ + N A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAISSNGFKTLAEGQRVEFE-ITNGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|227551594|ref|ZP_03981643.1| cold shock protein CspC [Enterococcus faecium TX1330]
 gi|257884481|ref|ZP_05664134.1| cold shock protein CspC [Enterococcus faecium 1,231,501]
 gi|257895800|ref|ZP_05675453.1| cold shock protein CspC [Enterococcus faecium Com12]
 gi|257898422|ref|ZP_05678075.1| cold shock protein CspC [Enterococcus faecium Com15]
 gi|293377586|ref|ZP_06623775.1| cold-shock DNA-binding domain protein [Enterococcus faecium
          PC4.1]
 gi|293571778|ref|ZP_06682794.1| cold-shock protein [Enterococcus faecium E980]
 gi|227179271|gb|EEI60243.1| cold shock protein CspC [Enterococcus faecium TX1330]
 gi|257820319|gb|EEV47467.1| cold shock protein CspC [Enterococcus faecium 1,231,501]
 gi|257832365|gb|EEV58786.1| cold shock protein CspC [Enterococcus faecium Com12]
 gi|257836334|gb|EEV61408.1| cold shock protein CspC [Enterococcus faecium Com15]
 gi|291608032|gb|EFF37338.1| cold-shock protein [Enterococcus faecium E980]
 gi|292643586|gb|EFF61707.1| cold-shock DNA-binding domain protein [Enterococcus faecium
          PC4.1]
          Length = 65

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +++G++KW+N DKG+GFIT E     G+DVF H SA+   G  +L EGQ VTYD
Sbjct: 1  MNKGTVKWFNSDKGFGFITGE----DGNDVFAHFSAIQGEGFKSLDEGQAVTYD 50


>gi|261409631|ref|YP_003245872.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|329928767|ref|ZP_08282616.1| cold shock-like protein CspE [Paenibacillus sp. HGF5]
 gi|261286094|gb|ACX68065.1| cold-shock DNA-binding domain protein [Paenibacillus sp.
          Y412MC10]
 gi|328937548|gb|EGG33966.1| cold shock-like protein CspE [Paenibacillus sp. HGF5]
          Length = 65

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     TE G DVF+H SA+ S G   L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFI----ETEDGGDVFVHFSAIQSEGFKTLEEGQSVEFEIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|325278203|ref|ZP_08143698.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
 gi|324096664|gb|EGB95015.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
          Length = 70

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KGYGFITP    ESG D+F+H  A+   G  +L EGQ VT++ VQ
Sbjct: 7  GTVKWFNDEKGYGFITP----ESGPDLFVHFRAIEGNGFKSLKEGQKVTFEAVQ 56


>gi|170723394|ref|YP_001751082.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida W619]
 gi|169761397|gb|ACA74713.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
          Length = 70

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KGYGFITP    ESG D+F+H  A+   G  +L EGQ VT++ VQ
Sbjct: 7  GTVKWFNDEKGYGFITP----ESGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQ 56


>gi|33598908|ref|NP_886551.1| putative cold shock-like protein [Bordetella parapertussis 12822]
 gi|33603987|ref|NP_891547.1| putative cold shock-like protein [Bordetella bronchiseptica RB50]
 gi|33568963|emb|CAE35377.1| putative cold shock-like protein [Bordetella bronchiseptica RB50]
 gi|33575038|emb|CAE39704.1| putative cold shock-like protein [Bordetella parapertussis]
          Length = 68

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N DKGYGFITP+     G DVF H SA+   G  +L EGQ V ++ V++ 
Sbjct: 1  MAQKGKVKWFNADKGYGFITPD---SGGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56

Query: 61 ANGKYSAE 68
            G  +AE
Sbjct: 57 PKGPQAAE 64


>gi|330469983|ref|YP_004407726.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
 gi|328812954|gb|AEB47126.1| cold-shock DNA-binding domain protein [Verrucosispora maris
          AB-18-032]
          Length = 67

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFITP+G    G DVF H SA+ S+G  +L E Q V ++ VQ     +
Sbjct: 4  GTVKWFNADKGFGFITPDG---GGADVFAHFSAIQSSGYRSLDENQRVEFEVVQGQKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENIR 65


>gi|317401626|gb|EFV82252.1| cold shock protein [Achromobacter xylosoxidans C54]
          Length = 68

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N DKGYGFITP+     G DVF H SA+   G  +L EGQ V ++ V++ 
Sbjct: 1  MAQKGKVKWFNADKGYGFITPDA---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56

Query: 61 ANGKYSAE 68
            G  +AE
Sbjct: 57 PKGPQAAE 64


>gi|260576175|ref|ZP_05844168.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
 gi|259021655|gb|EEW24958.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
          Length = 68

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P    +   DVF+H SA+  AG+  L +GQ VT+D +++  +G+
Sbjct: 4  GTVKWFNATKGFGFIAPANGNK---DVFVHVSAMERAGIRQLDDGQAVTFD-IESGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESAINLAL 67


>gi|329850898|ref|ZP_08265743.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
 gi|328841213|gb|EGF90784.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
          Length = 66

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G DVF+H +AV  AGL  L +GQ +TY+       GK
Sbjct: 4  GTVKWFNSTKGFGFIQPDAG---GSDVFVHITAVERAGLRGLNDGQKITYELATE--KGK 58

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 59 TSAVNLQ 65


>gi|260589144|ref|ZP_05855057.1| cold-shock domain protein [Blautia hansenii DSM 20583]
 gi|331082560|ref|ZP_08331685.1| cold shock-like protein cspLA [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|260540564|gb|EEX21133.1| cold-shock domain protein [Blautia hansenii DSM 20583]
 gi|330400538|gb|EGG80168.1| cold shock-like protein cspLA [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 66

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFIT     E G DVF+H SA+   G  +L EGQ V+YD  +  A
Sbjct: 1  MNKGTVKWFNAEKGYGFITG----EDGQDVFVHFSAINGEGFKSLEEGQAVSYDLTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGMQAANVEKL 66


>gi|163760029|ref|ZP_02167113.1| cold-shock DNA-binding domain protein [Hoeflea phototrophica
          DFL-43]
 gi|162282987|gb|EDQ33274.1| cold-shock DNA-binding domain protein [Hoeflea phototrophica
          DFL-43]
          Length = 69

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K+YN  KG+GFI P+  ++   DVF+H +A+  AG+  L EGQ V++D  ++   GK
Sbjct: 4  GTVKFYNDQKGFGFIAPDDGSK---DVFVHATALERAGMRGLAEGQKVSFDTAEDRRTGK 60

Query: 65 YSAENLK 71
           + +N++
Sbjct: 61 TAVQNIQ 67


>gi|225867733|ref|YP_002743681.1| cold shock protein [Streptococcus equi subsp. zooepidemicus]
 gi|225869669|ref|YP_002745616.1| cold shock protein [Streptococcus equi subsp. equi 4047]
 gi|225699073|emb|CAW92213.1| cold shock protein [Streptococcus equi subsp. equi 4047]
 gi|225701009|emb|CAW97768.1| cold shock protein [Streptococcus equi subsp. zooepidemicus]
          Length = 69

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI    STE+G DVF H SA+ S G  +L EGQ VT+D V++   G
Sbjct: 5  QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQSDGFRSLDEGQRVTFD-VEDGQRG 59

Query: 64 KYSAENLKL 72
            +    KL
Sbjct: 60 PQAVNITKL 68


>gi|163791309|ref|ZP_02185723.1| cold shock protein [Carnobacterium sp. AT7]
 gi|159873450|gb|EDP67540.1| cold shock protein [Carnobacterium sp. AT7]
          Length = 66

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG    GDD+F+H SA+   G  +L EGQ V ++ V+ + 
Sbjct: 1  MEKGTVKWFNAEKGFGFIEVEG----GDDIFVHFSAITGDGFKSLEEGQAVEFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGAQAANVVKL 66


>gi|326389103|ref|ZP_08210684.1| cold-shock DNA-binding protein family protein [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326206409|gb|EGD57245.1| cold-shock DNA-binding protein family protein [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 164

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K++N  KG+GFI  E   + G+DVF+H SAV  AGL  L EGQ + ++ V  D  G
Sbjct: 10 KGVVKFFNAQKGFGFIQRE---DGGEDVFVHISAVERAGLEGLAEGQQLQFNLV--DRGG 64

Query: 64 KYSAENLKLV 73
          K SA +L++V
Sbjct: 65 KISAADLQVV 74



 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 6/72 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFIT +   +   D F+H SAV  +GL  L EG  + +D ++ D  GK
Sbjct: 98  GTVKFFNSMKGFGFITRD---DGQPDAFVHISAVERSGLRELNEGDKLEFD-LEVDRRGK 153

Query: 65  YSAENLKLVPKS 76
           +SA N  LVP+ 
Sbjct: 154 HSAVN--LVPRQ 163


>gi|77463958|ref|YP_353462.1| cold-shock DNA-binding protein family protein [Rhodobacter
          sphaeroides 2.4.1]
 gi|126462801|ref|YP_001043915.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|146276900|ref|YP_001167059.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|332558830|ref|ZP_08413152.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides WS8N]
 gi|77388376|gb|ABA79561.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          2.4.1]
 gi|126104465|gb|ABN77143.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17029]
 gi|145555141|gb|ABP69754.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17025]
 gi|332276542|gb|EGJ21857.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides WS8N]
          Length = 68

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L++ Q + Y+ +Q+  +G+
Sbjct: 4  GTVKWFNSTKGFGFIAPD---DGGKDVFVHISAVERAGLKGLSDNQKIGYE-LQSGRDGR 59

Query: 65 YSAENLKLV 73
           SA +L+L+
Sbjct: 60 SSAGDLRLL 68


>gi|121535516|ref|ZP_01667325.1| cold-shock DNA-binding domain protein [Thermosinus
          carboxydivorans Nor1]
 gi|121305935|gb|EAX46868.1| cold-shock DNA-binding domain protein [Thermosinus
          carboxydivorans Nor1]
          Length = 68

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI      E G DVF+H SA+   G  +LTEGQ V +D V+    G 
Sbjct: 3  GKVKWFNAEKGYGFI----EREDGGDVFVHFSAIQEQGFKSLTEGQTVEFDIVEG-TRGP 57

Query: 65 YSAENLKLV 73
           +A  +KLV
Sbjct: 58 QAANVVKLV 66


>gi|149180594|ref|ZP_01859098.1| cold-shock domain family protein [Bacillus sp. SG-1]
 gi|148851747|gb|EDL65893.1| cold-shock domain family protein [Bacillus sp. SG-1]
          Length = 66

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N +KG+GFI  EG    G+DVF+H SA+   G  +L EGQ VT+D  Q
Sbjct: 1  MEKGTVKWFNAEKGFGFIEVEG----GEDVFVHFSAIQGEGFKSLDEGQAVTFDIEQ 53


>gi|67458654|ref|YP_246278.1| cold shock-like protein [Rickettsia felis URRWXCal2]
 gi|75536880|sp|Q4UMU5|CSPA_RICFE RecName: Full=Cold shock-like protein CspA
 gi|67004187|gb|AAY61113.1| Cold shock-like protein [Rickettsia felis URRWXCal2]
          Length = 70

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  E     G DVF+H+SAV +AGL +L EGQ V +D    +  GK
Sbjct: 7  GKVKWYNSTKNFGFIEQENG---GKDVFVHKSAVDAAGLHSLEEGQYVIFDL--EEKQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAVNLRI 69


>gi|297560839|ref|YP_003679813.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296845287|gb|ADH67307.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 70

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KGYGFITP    ESG D+F+H  A+   G  +L EGQ V+++ VQ
Sbjct: 7  GTVKWFNDEKGYGFITP----ESGPDLFVHFRAIEGTGFKSLQEGQTVSFEAVQ 56


>gi|309388512|gb|ADO76392.1| cold-shock DNA-binding protein family [Halanaerobium praevalens
          DSM 2228]
          Length = 67

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M++ G++KW++  KG+GFI      E GDDVF H SA+   G  NL EGQ V ++ V+ D
Sbjct: 1  MIYTGTVKWFDGKKGFGFI----EREDGDDVFAHFSAIEEEGFKNLEEGQEVEFEIVEGD 56

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 57 -RGPQAANIVKL 67


>gi|1169112|sp|P42016|CSPB_BACST RecName: Full=Cold shock protein CspB; AltName: Full=Major cold
          shock protein
 gi|1129127|emb|CAA51792.1| major cold shock protein (CspB) [Geobacillus stearothermophilus]
 gi|740006|prf||2004289C cold shock protein
          Length = 66

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KGYGFI  EG    G DVF+H +A+   G  +L EGQ V+++ VQ + 
Sbjct: 1  MQRGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKSLEEGQEVSFEIVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|328545836|ref|YP_004305945.1| cold shock transcription regulator [polymorphum gilvum
          SL003B-26A1]
 gi|326415576|gb|ADZ72639.1| Probable cold shock transcription regulator [Polymorphum gilvum
          SL003B-26A1]
          Length = 68

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFI PE  +    DVF+H SAV  +G+  L EGQ V ++ ++ D  G+
Sbjct: 4  GTVKFFNGQKGFGFIQPEDGSR---DVFVHISAVERSGIGRLDEGQKVQFE-LEQDRQGR 59

Query: 65 YSAENLKLV 73
           SA NL+L+
Sbjct: 60 SSAANLQLL 68


>gi|310815352|ref|YP_003963316.1| cold shock family protein [Ketogulonicigenium vulgare Y25]
 gi|308754087|gb|ADO42016.1| cold shock family protein [Ketogulonicigenium vulgare Y25]
          Length = 68

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+G ++   DVF+H SAV  +GL  L + Q V +D +++  +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPDGGSK---DVFVHISAVQRSGLEGLKDNQKVRFD-IESSRDGR 59

Query: 65 YSAENLKL 72
           SA NL +
Sbjct: 60 ESAVNLSV 67


>gi|291561124|emb|CBL39923.1| cold-shock DNA-binding protein family [butyrate-producing
          bacterium SS3/4]
          Length = 70

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KGYGFI+ +     GDDVF+H SA+   G   L EGQ VT+D  Q+  
Sbjct: 1  MNNGTVKWFNSEKGYGFISND---NGGDDVFVHFSAIVGDGFKTLEEGQKVTFDTEQDPK 57

Query: 62 NGK 64
          N K
Sbjct: 58 NSK 60


>gi|288556191|ref|YP_003428126.1| cold shock protein [Bacillus pseudofirmus OF4]
 gi|288547351|gb|ADC51234.1| cold shock protein [Bacillus pseudofirmus OF4]
          Length = 67

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N +KG+GFI  EG    G+DVF+H SA+   G  +L EGQ V ++ V+ D
Sbjct: 1  MTQTGTVKWFNAEKGFGFIEVEG----GNDVFVHFSAITGEGFKSLDEGQAVEFEIVEGD 56


>gi|110678556|ref|YP_681563.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
 gi|109454672|gb|ABG30877.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
          Length = 68

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+     G D+F+H SAV  AGL  L + Q VT++ ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPD---SGGKDIFVHISAVERAGLTGLADNQKVTFE-IETSRDGR 59

Query: 65 YSAENLKL 72
           SA +L +
Sbjct: 60 ESASDLAI 67


>gi|73663621|ref|YP_302402.1| cold shock protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72496136|dbj|BAE19457.1| cold shock protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
          Length = 66

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  EG    G+DVF+H SA+A  G  +L EGQ V ++ V+ D 
Sbjct: 1  MNNGTVKWFNAEKGFGFIEVEG----GNDVFVHFSAIAQEGYKSLEEGQAVEFEIVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|50952760|gb|AAT90293.1| putative cold shock protein [uncultured proteobacterium
          eBACred25D05]
          Length = 68

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI P   ++ G+DVF+H SAV  +GL  L E QLV ++ V+   +G
Sbjct: 3  QGKVKWFNTTKGFGFIEP---SDGGNDVFVHISAVQKSGLKGLAEDQLVNFELVEG-RDG 58

Query: 64 KYSAENLKL 72
          +  A+ L L
Sbjct: 59 RQMADELSL 67


>gi|289522213|ref|ZP_06439067.1| cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504049|gb|EFD25213.1| cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 67

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M  +G++KW+N  KGYGFIT +G    G DVF+H SA+   G   L EGQ V+++ VQ
Sbjct: 1  MKTQGTVKWFNESKGYGFITADG----GKDVFVHYSAIQQDGFKTLAEGQRVSFEIVQ 54


>gi|116254513|ref|YP_770349.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|115259161|emb|CAK10276.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
          viciae 3841]
          Length = 67

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKG+GFITPE     G DVF+H SA+   G  +L EG  VT++  Q+   GK
Sbjct: 4  GTVKFFNDDKGFGFITPE---TGGTDVFVHVSALQQGG--SLREGDKVTFEVGQDRKTGK 58

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 59 SKAENVSVL 67


>gi|323703019|ref|ZP_08114675.1| cold-shock DNA-binding domain protein [Desulfotomaculum
          nigrificans DSM 574]
 gi|323532032|gb|EGB21915.1| cold-shock DNA-binding domain protein [Desulfotomaculum
          nigrificans DSM 574]
          Length = 65

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI      E G DVF+H SA+   G  +LTEGQ V +D V+  A G 
Sbjct: 3  GKVKWFNAEKGYGFI----EREEGGDVFVHFSAIQEEGFKSLTEGQEVEFDIVEG-ARGP 57

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 58 QAANVVKL 65


>gi|312882977|ref|ZP_07742708.1| putative cold shock protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369137|gb|EFP96658.1| putative cold shock protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 70

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITPE     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 7  GTVKWFNEEKGFGFITPE---NGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQ 57


>gi|253575890|ref|ZP_04853224.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844684|gb|EES72698.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 65

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     TE G DVF+H SA+ + G   L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFI----ETEEGGDVFVHFSAIQAEGFKTLEEGQSVEFEIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|83592856|ref|YP_426608.1| cold-shock DNA-binding protein family protein [Rhodospirillum
          rubrum ATCC 11170]
 gi|83575770|gb|ABC22321.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
          11170]
          Length = 68

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   +   DVF+H +AV  AGL +L EGQ V ++ ++   +GK
Sbjct: 4  GTVKWFNGTKGYGFIEPD---DGSADVFVHITAVQQAGLDSLREGQKVAFE-LERGRSGK 59

Query: 65 YSAENLK 71
           +A NLK
Sbjct: 60 MAASNLK 66


>gi|56419891|ref|YP_147209.1| cold shock protein [Geobacillus kaustophilus HTA426]
 gi|138894876|ref|YP_001125329.1| major cold shock protein CspB [Geobacillus thermodenitrificans
          NG80-2]
 gi|196248552|ref|ZP_03147253.1| cold-shock DNA-binding domain protein [Geobacillus sp. G11MC16]
 gi|261419562|ref|YP_003253244.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC61]
 gi|295402279|ref|ZP_06812235.1| cold-shock DNA-binding domain protein [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|297530466|ref|YP_003671741.1| cold-shock DNA-binding domain protein [Geobacillus sp. C56-T3]
 gi|312111498|ref|YP_003989814.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y4.1MC1]
 gi|319766378|ref|YP_004131879.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC52]
 gi|729217|sp|P41016|CSPB_BACCL RecName: Full=Cold shock protein CspB
 gi|7546262|pdb|1C9O|A Chain A, Crystal Structure Analysis Of The Bacillus Caldolyticus
          Cold Shock Protein Bc-Csp
 gi|7546263|pdb|1C9O|B Chain B, Crystal Structure Analysis Of The Bacillus Caldolyticus
          Cold Shock Protein Bc-Csp
 gi|146386838|pdb|2HAX|A Chain A, Crystal Structure Of Bacillus Caldolyticus Cold Shock
          Protein In Complex With Hexathymidine
 gi|146386839|pdb|2HAX|B Chain B, Crystal Structure Of Bacillus Caldolyticus Cold Shock
          Protein In Complex With Hexathymidine
 gi|1333711|emb|CAA51790.1| major cold shock protein (CspB) [Bacillus caldolyticus]
 gi|56379733|dbj|BAD75641.1| cold shock protein [Geobacillus kaustophilus HTA426]
 gi|134266389|gb|ABO66584.1| Major cold shock protein CspB [Geobacillus thermodenitrificans
          NG80-2]
 gi|196212277|gb|EDY07035.1| cold-shock DNA-binding domain protein [Geobacillus sp. G11MC16]
 gi|261376019|gb|ACX78762.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC61]
 gi|294975672|gb|EFG51294.1| cold-shock DNA-binding domain protein [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|297253718|gb|ADI27164.1| cold-shock DNA-binding domain protein [Geobacillus sp. C56-T3]
 gi|311216599|gb|ADP75203.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y4.1MC1]
 gi|317111244|gb|ADU93736.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC52]
 gi|740004|prf||2004289A cold shock protein
          Length = 66

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KGYGFI  EG    G DVF+H +A+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQRGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|293376634|ref|ZP_06622862.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
          PC909]
 gi|325839413|ref|ZP_08166852.1| cold shock protein CspD [Turicibacter sp. HGF1]
 gi|292644860|gb|EFF62942.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
          PC909]
 gi|325490533|gb|EGC92849.1| cold shock protein CspD [Turicibacter sp. HGF1]
          Length = 66

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI+ EG    G+DVF+H SA+   G   L EGQ V++D V+ + 
Sbjct: 1  MNTGTVKWFNAEKGFGFISVEG----GEDVFVHYSAITGEGFKTLEEGQKVSFDIVEGNR 56

Query: 62 NGKYS 66
            + S
Sbjct: 57 GAQAS 61


>gi|296284922|ref|ZP_06862920.1| cold shock protein [Citromicrobium bathyomarinum JL354]
          Length = 270

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G +K++N  KG+GFI  EG    GDDVF+H SAV  AGL  L EGQ + ++ V  D  G
Sbjct: 103 KGQVKFFNGQKGFGFIQQEGG---GDDVFVHISAVERAGLEGLAEGQELEFNLV--DRGG 157

Query: 64  KYSAENLKLV 73
           K SA++L++V
Sbjct: 158 KISAQDLQVV 167



 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GF+  +   +   D F+H SAV  +GL  + EG+   +D ++ D  GK
Sbjct: 204 GTVKFFNSMKGFGFLVRD---DGQPDAFVHISAVERSGLSQINEGERYEFD-LEVDRRGK 259

Query: 65  YSAENL 70
           YSA NL
Sbjct: 260 YSAVNL 265


>gi|195977285|ref|YP_002122529.1| major cold-shock protein [Streptococcus equi subsp. zooepidemicus
          MGCS10565]
 gi|195973990|gb|ACG61516.1| major cold-shock protein [Streptococcus equi subsp. zooepidemicus
          MGCS10565]
          Length = 67

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI    STE+G DVF H SA+ S G  +L EGQ VT+D V++   G
Sbjct: 3  QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQSDGFRSLDEGQRVTFD-VEDGQRG 57

Query: 64 KYSAENLKL 72
            +    KL
Sbjct: 58 PQAVNITKL 66


>gi|104781104|ref|YP_607602.1| cold shock protein CapA [Pseudomonas entomophila L48]
 gi|95110091|emb|CAK14796.1| cold shock protein CapA [Pseudomonas entomophila L48]
          Length = 70

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 3/52 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
            G++KW+N +KGYGFITP G    GDD+F+H  A+ S G  +L EGQ VT+
Sbjct: 5  QNGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQAVTF 53


>gi|254461151|ref|ZP_05074567.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium HTCC2083]
 gi|206677740|gb|EDZ42227.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacteraceae
          bacterium HTCC2083]
          Length = 68

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PEG    G+DVF+H SAV  +GL  L + Q ++++ +++  +G+
Sbjct: 4  GTVKWFNTTKGFGFIEPEG---GGNDVFVHISAVERSGLTGLADNQKISFE-LEDGRDGR 59

Query: 65 YSAENLKLV 73
            A NL L+
Sbjct: 60 QMAANLALL 68


>gi|85709645|ref|ZP_01040710.1| cold shock protein [Erythrobacter sp. NAP1]
 gi|85688355|gb|EAQ28359.1| cold shock protein [Erythrobacter sp. NAP1]
          Length = 262

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++K++N  KG+GFI  E     G+DVF+H SAV  AGL  L EGQ + ++ V  D  G
Sbjct: 108 KGTVKFFNGQKGFGFIQQE---SGGEDVFVHISAVERAGLEGLAEGQELEFNLV--DRGG 162

Query: 64  KYSAENLKLV 73
           K SA++L++V
Sbjct: 163 KVSAQDLQVV 172



 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GF+  +   +   D F+H SAV  +GL  + EG+   +D ++ D  GK
Sbjct: 196 GTVKFFNSMKGFGFLVRD---DGQPDAFVHISAVERSGLSAINEGERFEFD-LEVDRRGK 251

Query: 65  YSAENL 70
           YSA NL
Sbjct: 252 YSAVNL 257


>gi|148550775|ref|YP_001260214.1| cold-shock DNA-binding protein family protein [Sphingomonas
          wittichii RW1]
 gi|148503194|gb|ABQ71447.1| cold-shock DNA-binding protein family [Sphingomonas wittichii
          RW1]
          Length = 71

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKGYGFI PE     G D F+H SAV  AG   L + Q ++Y+ ++ D  GK
Sbjct: 6  GTVKFFNADKGYGFIAPE---TGGQDAFVHISAVERAGFNTLNQNQRLSYE-LETDRRGK 61

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 62 TSAVNLQ 68


>gi|75758582|ref|ZP_00738701.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|206972882|ref|ZP_03233804.1| conserved domain protein [Bacillus cereus AH1134]
 gi|228905763|ref|ZP_04069678.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|228943462|ref|ZP_04105906.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228976283|ref|ZP_04136754.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|229073834|ref|ZP_04206924.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|229191418|ref|ZP_04318403.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|74493928|gb|EAO57025.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|206731766|gb|EDZ48966.1| conserved domain protein [Bacillus cereus AH1134]
 gi|228592100|gb|EEK49934.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|228709285|gb|EEL61369.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|228783387|gb|EEM31495.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228816242|gb|EEM62423.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228853880|gb|EEM98623.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
          Length = 67

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ VT+D  Q
Sbjct: 1  MEKGNVKWFNGEKGFGFIEREG----GDDVFVHFSAIQGEGYKTLEEGQAVTFDLEQ 53


>gi|304407680|ref|ZP_07389331.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304343163|gb|EFM09006.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 65

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     TE G DVF+H SA+ + G   L EGQ V +D V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFI----ETEQGGDVFVHFSAIQADGFKTLEEGQAVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 57 PQAANVTKL 65


>gi|225574379|ref|ZP_03782989.1| hypothetical protein RUMHYD_02448 [Blautia hydrogenotrophica DSM
          10507]
 gi|225038381|gb|EEG48627.1| hypothetical protein RUMHYD_02448 [Blautia hydrogenotrophica DSM
          10507]
          Length = 66

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFIT     E G DVF+H SA+   G  +L EGQ V+YD  +  A
Sbjct: 1  MNKGTVKWFNAEKGYGFITG----EDGADVFVHFSAINGEGFKSLEEGQSVSYDLTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGMQAANVTKL 66


>gi|261404186|ref|YP_003240427.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|261280649|gb|ACX62620.1| cold-shock DNA-binding domain protein [Paenibacillus sp.
          Y412MC10]
          Length = 66

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G+DVF+H SA+A  G  +L EGQ V ++ VQ   
Sbjct: 1  MQTGTVKWFNAEKGFGFIEVEG----GEDVFVHFSAIAGDGFKSLDEGQRVEFNVVQ--G 54

Query: 62 NGKYSAENL 70
          N    AEN+
Sbjct: 55 NRGQQAENV 63


>gi|312144475|ref|YP_003995921.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
 gi|309388505|gb|ADO76385.1| cold-shock DNA-binding protein family [Halanaerobium praevalens
          DSM 2228]
 gi|311905126|gb|ADQ15567.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
          Length = 67

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M++ G++KW++  KG+GFI      E GDDVF H SA+   G  NL EGQ V ++ V+ D
Sbjct: 1  MIYTGTVKWFDGKKGFGFI----EREDGDDVFAHFSAIEEEGFKNLDEGQEVEFEIVEGD 56

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 57 -RGPQAANIVKL 67


>gi|257865258|ref|ZP_05644911.1| cold shock protein CspC [Enterococcus casseliflavus EC30]
 gi|257871586|ref|ZP_05651239.1| cold shock protein CspC [Enterococcus casseliflavus EC10]
 gi|257799192|gb|EEV28244.1| cold shock protein CspC [Enterococcus casseliflavus EC30]
 gi|257805750|gb|EEV34572.1| cold shock protein CspC [Enterococcus casseliflavus EC10]
          Length = 66

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +++G++KW+N DKG+GFIT     E+G DVF H SA+ + G  +L EGQ VT+D
Sbjct: 1  MNKGTVKWFNADKGFGFITG----ENGQDVFAHFSAIQADGFKSLDEGQAVTFD 50


>gi|257784693|ref|YP_003179910.1| cold-shock DNA-binding domain-containing protein [Atopobium
          parvulum DSM 20469]
 gi|257473200|gb|ACV51319.1| cold-shock DNA-binding domain protein [Atopobium parvulum DSM
          20469]
          Length = 67

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+NPDKGYGFI    S E GDD+F+H S +   G   L EGQ V ++ +    NG
Sbjct: 3  QGTVKWFNPDKGYGFI----SREDGDDLFVHFSEIQMDGFKTLDEGQPVEFE-ITTGQNG 57

Query: 64 KYSAENLKLV 73
          K  A ++  +
Sbjct: 58 KLQASSVHKI 67


>gi|167035306|ref|YP_001670537.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida GB-1]
 gi|170720314|ref|YP_001748002.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida W619]
 gi|166861794|gb|ABZ00202.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
 gi|169758317|gb|ACA71633.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
          Length = 69

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 36/50 (72%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N +KGYGFITP    +SGDD+F+H  A+ + G   L EGQ VT+
Sbjct: 7  GTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQADGFKTLKEGQAVTF 52


>gi|146306439|ref|YP_001186904.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina ymp]
 gi|145574640|gb|ABP84172.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
          Length = 69

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFITP    +SGDD+F+H  A+ S G  +L EGQ V+  +V       
Sbjct: 7  GTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVS--FVATRGQKG 60

Query: 65 YSAENLKLV 73
            AE ++++
Sbjct: 61 MQAEEVQVI 69


>gi|310826977|ref|YP_003959334.1| cold shock protein [Eubacterium limosum KIST612]
 gi|308738711|gb|ADO36371.1| cold shock protein [Eubacterium limosum KIST612]
          Length = 66

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +++G++KW+N +KG+GFI    S E GDDVF+H SA+   G   L EGQ VT+D
Sbjct: 1  MNKGTVKWFNSEKGFGFI----SREEGDDVFVHFSAITGDGFKTLNEGQEVTFD 50


>gi|163736889|ref|ZP_02144307.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
          BS107]
 gi|163740688|ref|ZP_02148082.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
          2.10]
 gi|161386546|gb|EDQ10921.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
          2.10]
 gi|161389493|gb|EDQ13844.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
          BS107]
          Length = 68

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE     G DVF+H SAV  +GL  L + Q V+Y+ ++   +GK
Sbjct: 4  GTVKWFNATKGYGFIEPE---SGGKDVFVHISAVERSGLNGLNDNQKVSYE-LETGRDGK 59

Query: 65 YSAENLKLV 73
           SA +L+L+
Sbjct: 60 QSAGSLELL 68


>gi|149185382|ref|ZP_01863698.1| cold shock protein [Erythrobacter sp. SD-21]
 gi|148830602|gb|EDL49037.1| cold shock protein [Erythrobacter sp. SD-21]
          Length = 263

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++K++N  KG+GFI  E     G+D+F+H SAV  AGL  L EGQ + ++ V  D  G
Sbjct: 110 KGTVKFFNSQKGFGFIQQE---TGGEDIFVHISAVERAGLEGLAEGQELEFNLV--DRGG 164

Query: 64  KYSAENLKLV 73
           K SA++L++V
Sbjct: 165 KVSAQDLQVV 174



 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GF+T +   +   D F+H SAV  +GL  + EG+   +D ++ D  GK
Sbjct: 198 GTVKFFNSMKGFGFLTRD---DGQPDAFVHISAVERSGLSQINEGERYEFD-LEVDRRGK 253

Query: 65  YSAENL 70
           YSA NL
Sbjct: 254 YSAVNL 259


>gi|58040591|ref|YP_192555.1| cold shock protein [Gluconobacter oxydans 621H]
 gi|58003005|gb|AAW61899.1| Cold shock protein [Gluconobacter oxydans 621H]
          Length = 96

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D F+H S +  AG+  L EGQ V+Y+ +++  NGK
Sbjct: 32 GTVKWFNSTKGFGFIQPD---NGGQDAFVHISELERAGMHTLNEGQHVSYE-LESGRNGK 87

Query: 65 YSAENLKLV 73
           SA ++K +
Sbjct: 88 TSAVSIKAI 96


>gi|257867741|ref|ZP_05647394.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC30]
 gi|257869629|ref|ZP_05649282.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2]
 gi|257874069|ref|ZP_05653722.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC10]
 gi|257876646|ref|ZP_05656299.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC20]
 gi|325571055|ref|ZP_08146627.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
 gi|257801824|gb|EEV30727.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC30]
 gi|257803793|gb|EEV32615.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2]
 gi|257808233|gb|EEV37055.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC10]
 gi|257810812|gb|EEV39632.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC20]
 gi|325156140|gb|EGC68326.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
          Length = 66

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N DKG+GFIT E    +G+DVF+H SA+   G   L EGQ VT+D
Sbjct: 1  METGTVKWFNSDKGFGFITAE----NGNDVFVHFSAIQGEGFKTLEEGQAVTFD 50


>gi|294101897|ref|YP_003553755.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
 gi|293616877|gb|ADE57031.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
          Length = 67

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M  +G++KW+N  KGYGFIT    T+ G D+F+H SA+ + G   L EGQ V+++ V+
Sbjct: 1  MTTQGTVKWFNASKGYGFIT----TDEGKDIFVHFSAIQTEGFKTLEEGQRVSFEIVE 54


>gi|223985451|ref|ZP_03635510.1| hypothetical protein HOLDEFILI_02816 [Holdemania filiformis DSM
          12042]
 gi|223962540|gb|EEF66993.1| hypothetical protein HOLDEFILI_02816 [Holdemania filiformis DSM
          12042]
          Length = 66

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFIT    T+ G DVF+H SA+ + G   L +G+ V+++ VQ+D  G+
Sbjct: 4  GKVKWFNAEKGYGFIT----TDEGKDVFVHYSAIQTDGFKTLDDGEAVSFEVVQSD-RGE 58

Query: 65 YSAENLKL 72
           +A   KL
Sbjct: 59 QAANVCKL 66


>gi|283479166|emb|CAY75082.1| Cold shock-like protein cspE (CSP-E) [Erwinia pyrifoliae DSM
          12163]
          Length = 79

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++ + N A G
Sbjct: 15 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 70

Query: 64 KYSA 67
            +A
Sbjct: 71 PSAA 74


>gi|163735236|ref|ZP_02142671.1| cold shock protein CspA [Roseobacter litoralis Och 149]
 gi|161391450|gb|EDQ15784.1| cold shock protein CspA [Roseobacter litoralis Och 149]
          Length = 68

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+     G D+F+H SAV  AGL  L + Q VT++ ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPD---NGGKDIFVHISAVERAGLTGLADNQKVTFE-IETSRDGR 59

Query: 65 YSAENLKL 72
           SA +L +
Sbjct: 60 ESASDLAI 67


>gi|304317414|ref|YP_003852559.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|323704655|ref|ZP_08116233.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
 gi|302778916|gb|ADL69475.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|323536117|gb|EGB25890.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
          Length = 67

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N +KGYGFI  EG    G DVF+H SA+   G   L EGQ V +D V+ +   
Sbjct: 3  RGKVKWFNAEKGYGFIEREG----GSDVFVHYSAIEQDGFKTLEEGQEVEFDIVEAEKGP 58

Query: 64 KYSAENLKLV 73
          +  A N+K V
Sbjct: 59 Q--AANVKKV 66


>gi|163791280|ref|ZP_02185694.1| cold-shock domain family protein [Carnobacterium sp. AT7]
 gi|159873421|gb|EDP67511.1| cold-shock domain family protein [Carnobacterium sp. AT7]
          Length = 66

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N +KG+GFI  EG+    DDVF+H SA+ + G  +L EGQ VT+D
Sbjct: 1  MEQGTVKWFNAEKGFGFIEREGA----DDVFVHFSAIQTDGFKSLEEGQTVTFD 50


>gi|159043321|ref|YP_001532115.1| cold-shock DNA-binding domain-containing protein [Dinoroseobacter
          shibae DFL 12]
 gi|157911081|gb|ABV92514.1| cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL
          12]
          Length = 69

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   E G DVF+H SAV  AGL  L +   + Y+ ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERAGLTGLADNTKIEYE-LREGRDGR 59

Query: 65 YSAENLKLV 73
           SA  LK+V
Sbjct: 60 SSATELKVV 68


>gi|28377937|ref|NP_784829.1| cold shock protein CspP [Lactobacillus plantarum WCFS1]
 gi|254556121|ref|YP_003062538.1| cold shock protein CspP [Lactobacillus plantarum JDM1]
 gi|300766640|ref|ZP_07076557.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308180118|ref|YP_003924246.1| cold shock protein CspP [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|2493768|sp|P71478|CSP1_LACPL RecName: Full=Cold shock protein 1
 gi|1620431|emb|CAA70005.1| csp [Lactobacillus plantarum]
 gi|9968450|emb|CAC06094.1| cold shock protein [Lactobacillus plantarum]
 gi|28270771|emb|CAD63676.1| cold shock protein CspP [Lactobacillus plantarum WCFS1]
 gi|254045048|gb|ACT61841.1| cold shock protein CspP [Lactobacillus plantarum JDM1]
 gi|300495740|gb|EFK30891.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308045609|gb|ADN98152.1| cold shock protein CspP [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 66

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N DKGYGFIT     E G+DVF+H SA+ + G   L EGQ VT+D   +D
Sbjct: 1  MKNGTVKWFNADKGYGFIT----GEDGNDVFVHFSAIQTDGFKTLEEGQKVTFDEESSD 55


>gi|295688372|ref|YP_003592065.1| cold-shock DNA-binding domain-containing protein [Caulobacter
          segnis ATCC 21756]
 gi|295430275|gb|ADG09447.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC
          21756]
          Length = 69

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D+F+H SAV  AGL  L EGQ ++++   +  +GK
Sbjct: 4  GTVKWFNSAKGFGFIQPD---NGGQDIFVHISAVERAGLNGLNEGQKLSFEPEVDRRSGK 60

Query: 65 YSAENLKLV 73
           SA  L+ V
Sbjct: 61 TSAGQLQAV 69


>gi|94498414|ref|ZP_01304972.1| cold-shock DNA-binding domain protein [Sphingomonas sp. SKA58]
 gi|94422169|gb|EAT07212.1| cold-shock DNA-binding domain protein [Sphingomonas sp. SKA58]
          Length = 70

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKGYGFI P+  T    D F+H +AV  AGL  L E   V+YD ++ D
Sbjct: 1  MAITGTVKFFNADKGYGFIAPDDGTP---DAFVHITAVERAGLATLREKDRVSYD-LEQD 56

Query: 61 ANGKYSAENL 70
            GK +A NL
Sbjct: 57 RRGKMAAVNL 66


>gi|328957165|ref|YP_004374551.1| putative cold shock protein, CspA family [Carnobacterium sp.
          17-4]
 gi|328673489|gb|AEB29535.1| putative cold shock protein, CspA family [Carnobacterium sp.
          17-4]
          Length = 66

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N +KG+GFI  EG+    DDVF+H SA+   G  +L EGQ VT+D
Sbjct: 1  MEQGTVKWFNAEKGFGFIEREGA----DDVFVHFSAIQGEGFKSLEEGQAVTFD 50


>gi|315649820|ref|ZP_07902903.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|315274794|gb|EFU38175.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
          Length = 65

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     TE G DVF+H SA+ S G   L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFI----ETEDGGDVFVHFSAIQSEGFKTLEEGQSVEFEIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +K+
Sbjct: 57 PQAANVIKI 65


>gi|220923754|ref|YP_002499056.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium nodulans ORS 2060]
 gi|219948361|gb|ACL58753.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
          ORS 2060]
          Length = 69

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K+YN  KG+GFI PE  ++   DVF+H +A+  AGL +L++GQ V++D  ++  +GK
Sbjct: 4  GIVKFYNDQKGFGFIQPEDGSK---DVFVHATALERAGLGSLSQGQKVSFDTAEDRRSGK 60

Query: 65 YSAENLKL 72
           +  N++ 
Sbjct: 61 MAVNNIQF 68


>gi|33594722|ref|NP_882366.1| putative cold shock-like protein [Bordetella pertussis Tohama I]
 gi|33564798|emb|CAE44126.1| putative cold shock-like protein [Bordetella pertussis Tohama I]
 gi|332384133|gb|AEE68980.1| putative cold shock-like protein [Bordetella pertussis CS]
          Length = 68

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N DKGYGFITP+     G DVF H SA+   G  +L EGQ V ++ V++ 
Sbjct: 1  MAQKGKVKWFNADKGYGFITPD---SGGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDV 56

Query: 61 ANGKYSAE 68
            G  +AE
Sbjct: 57 PKGPQAAE 64


>gi|71907020|ref|YP_284607.1| cold-shock DNA-binding protein family protein [Dechloromonas
          aromatica RCB]
 gi|71846641|gb|AAZ46137.1| cold-shock DNA-binding protein family [Dechloromonas aromatica
          RCB]
          Length = 67

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 38/51 (74%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+   + G+D+F H SA+ S+G   LTEGQ V++D
Sbjct: 4  GTVKWFNDSKGFGFITPD---QGGEDLFAHFSAIQSSGFKTLTEGQKVSFD 51


>gi|330502376|ref|YP_004379245.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina NK-01]
 gi|328916662|gb|AEB57493.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina NK-01]
          Length = 69

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFITP    +SGDD+F+H  A+ S G   L EGQ V+  +V       
Sbjct: 7  GTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQSDGFKTLKEGQQVS--FVATRGQKG 60

Query: 65 YSAENLKLV 73
            AE ++++
Sbjct: 61 MQAEEVQVI 69


>gi|300722306|ref|YP_003711591.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Xenorhabdus nematophila ATCC 19061]
 gi|297628808|emb|CBJ89386.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Xenorhabdus nematophila ATCC 19061]
          Length = 69

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N  KG+GFITPE  ++   DVF+H SA+ S+G   L EGQ V ++  + D
Sbjct: 5  KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAIKSSGFKTLAEGQKVEFEITEGD 58


>gi|182677655|ref|YP_001831801.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
          indica subsp. indica ATCC 9039]
 gi|182633538|gb|ACB94312.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 70

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++K++N DKGYGFI P+   + G D+F+H +AV  AGL  L EGQ ++Y+ ++ D
Sbjct: 1  MSQQGTVKFFNSDKGYGFIKPD---DGGRDIFVHITAVERAGLQALNEGQRLSYE-IEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KKGK 60


>gi|312144474|ref|YP_003995920.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
 gi|311905125|gb|ADQ15566.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
          Length = 67

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M++ G++KW++  KG+GFI      E GDDVF H SA+   G  NL EGQ V ++ V+ D
Sbjct: 1  MIYTGTVKWFDGKKGFGFI----EREDGDDVFAHFSAIQEDGFKNLEEGQEVEFEIVEGD 56

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 57 -RGPQAANIVKL 67


>gi|226322941|ref|ZP_03798459.1| hypothetical protein COPCOM_00713 [Coprococcus comes ATCC 27758]
 gi|225208727|gb|EEG91081.1| hypothetical protein COPCOM_00713 [Coprococcus comes ATCC 27758]
          Length = 67

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 3/59 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +++G++KW+N  KGYGFIT E    +G+DVF+H S +A  G  +L EGQ VT+D  + +
Sbjct: 1  MNKGTVKWFNAQKGYGFITNE---STGEDVFVHFSGIAGEGYKSLEEGQNVTFDITEGN 56


>gi|225387921|ref|ZP_03757685.1| hypothetical protein CLOSTASPAR_01691 [Clostridium asparagiforme
          DSM 15981]
 gi|225045964|gb|EEG56210.1| hypothetical protein CLOSTASPAR_01691 [Clostridium asparagiforme
          DSM 15981]
          Length = 86

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 42/55 (76%), Gaps = 3/55 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           +++G++KW+N  KG+GFIT   ++E+G+D+F+H S +AS G  +L +GQ VT+D
Sbjct: 19 FMNKGTVKWFNSQKGFGFIT---NSENGEDIFVHYSGIASNGFKSLEDGQSVTFD 70


>gi|188534489|ref|YP_001908286.1| cold shock protein CspE [Erwinia tasmaniensis Et1/99]
 gi|259909137|ref|YP_002649493.1| cold shock protein CspE [Erwinia pyrifoliae Ep1/96]
 gi|292487595|ref|YP_003530467.1| cold shock-like protein CspE [Erwinia amylovora CFBP1430]
 gi|292898834|ref|YP_003538203.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
 gi|300715812|ref|YP_003740615.1| Cold shock protein [Erwinia billingiae Eb661]
 gi|188029531|emb|CAO97408.1| Putative cold shock-like protein [Erwinia tasmaniensis Et1/99]
 gi|224964759|emb|CAX56276.1| similar to cold shock protein CspE [Erwinia pyrifoliae Ep1/96]
 gi|291198682|emb|CBJ45791.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
 gi|291553014|emb|CBA20059.1| Cold shock-like protein cspE (CSP-E) [Erwinia amylovora CFBP1430]
 gi|299061648|emb|CAX58764.1| Cold shock protein [Erwinia billingiae Eb661]
 gi|310766962|gb|ADP11912.1| Cold shock-like protein cspE (CSP-E) [Erwinia sp. Ejp617]
 gi|312171701|emb|CBX79959.1| Cold shock-like protein cspE (CSP-E) [Erwinia amylovora ATCC
          BAA-2158]
          Length = 69

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++ + N A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 60

Query: 64 KYSA 67
            +A
Sbjct: 61 PSAA 64


>gi|258542278|ref|YP_003187711.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-01]
 gi|329113442|ref|ZP_08242223.1| Cold shock-like protein CspE [Acetobacter pomorum DM001]
 gi|256633356|dbj|BAH99331.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636415|dbj|BAI02384.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639468|dbj|BAI05430.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642524|dbj|BAI08479.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645579|dbj|BAI11527.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648632|dbj|BAI14573.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651685|dbj|BAI17619.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654676|dbj|BAI20603.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-12]
 gi|326697267|gb|EGE48927.1| Cold shock-like protein CspE [Acetobacter pomorum DM001]
          Length = 225

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG++KWYN  KG+GFITPE     G D+F+H SA+  +GL  L EGQ V    VQ    G
Sbjct: 161 RGTVKWYNSVKGFGFITPE---SGGKDIFVHASALERSGLSALNEGQGVNVKVVQGQ-KG 216

Query: 64  KYSAE 68
             +AE
Sbjct: 217 PEAAE 221



 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N +KG+GF+     T    DVFLH +A++ AG   ++ G  +     Q    G+ 
Sbjct: 63  TVKWFNSEKGFGFVELADGT---GDVFLHANALSQAGHQGVSPGATLVVRIGQG-PKGRQ 118

Query: 66  SAENLKL 72
            AE + +
Sbjct: 119 VAEVISV 125


>gi|83589095|ref|YP_429104.1| cold-shock DNA-binding protein family protein [Moorella
          thermoacetica ATCC 39073]
 gi|83572009|gb|ABC18561.1| cold-shock DNA-binding protein family [Moorella thermoacetica
          ATCC 39073]
          Length = 65

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+NP+KGYGFI      E G DVF+H SA+   G   L EGQ V +D V+
Sbjct: 2  QGKVKWFNPEKGYGFI----EREDGKDVFVHFSAIQEEGFKTLAEGQEVEFDIVE 52


>gi|294676164|ref|YP_003576779.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003]
 gi|294474984|gb|ADE84372.1| cold shock protein CspA-1 [Rhodobacter capsulatus SB 1003]
          Length = 68

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N +KG+GFI PEG  +   DVF+H SAV  AG+  L +G  VT+  +++  +G+
Sbjct: 4  GTVKFFNQNKGFGFIEPEGGAQ---DVFVHISAVERAGISRLVDGAKVTFQ-IESGRDGR 59

Query: 65 YSAENLKLV 73
           SA +L LV
Sbjct: 60 KSACDLALV 68


>gi|152977181|ref|YP_001376698.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152025933|gb|ABS23703.1| putative cold-shock DNA-binding domain protein [Bacillus
          cytotoxicus NVH 391-98]
          Length = 66

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    GDDVF+H SA+ S G   L EGQ V+++ V+ +
Sbjct: 1  MQTGKVKWFNSEKGFGFIEVEG----GDDVFVHFSAIQSEGFKTLEEGQEVSFEIVEGN 55


>gi|227550530|ref|ZP_03980579.1| cold shock protein [Enterococcus faecium TX1330]
 gi|257880205|ref|ZP_05659858.1| cold-shock protein [Enterococcus faecium 1,230,933]
 gi|257883006|ref|ZP_05662659.1| cold-shock protein [Enterococcus faecium 1,231,502]
 gi|257885248|ref|ZP_05664901.1| cold-shock protein [Enterococcus faecium 1,231,501]
 gi|257888557|ref|ZP_05668210.1| cold-shock protein [Enterococcus faecium 1,141,733]
 gi|257891411|ref|ZP_05671064.1| cold-shock protein [Enterococcus faecium 1,231,410]
 gi|257893592|ref|ZP_05673245.1| cold-shock protein [Enterococcus faecium 1,231,408]
 gi|257897068|ref|ZP_05676721.1| cold-shock protein [Enterococcus faecium Com12]
 gi|257899006|ref|ZP_05678659.1| cold-shock protein [Enterococcus faecium Com15]
 gi|258614393|ref|ZP_05712163.1| cold shock protein [Enterococcus faecium DO]
 gi|260560497|ref|ZP_05832671.1| cold-shock protein [Enterococcus faecium C68]
 gi|261209014|ref|ZP_05923419.1| cold-shock protein [Enterococcus faecium TC 6]
 gi|289565174|ref|ZP_06445626.1| cold shock-like protein cspD [Enterococcus faecium D344SRF]
 gi|293378756|ref|ZP_06624914.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
 gi|293553256|ref|ZP_06673893.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293563316|ref|ZP_06677766.1| cold-shock protein [Enterococcus faecium E1162]
 gi|293569311|ref|ZP_06680609.1| cold-shock protein [Enterococcus faecium E1071]
 gi|293572477|ref|ZP_06683456.1| cold-shock protein [Enterococcus faecium E980]
 gi|294615298|ref|ZP_06695174.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294619063|ref|ZP_06698558.1| cold shock protein [Enterococcus faecium E1679]
 gi|294621461|ref|ZP_06700630.1| cold-shock protein [Enterococcus faecium U0317]
 gi|314939797|ref|ZP_07847017.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|314943906|ref|ZP_07850632.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|314950003|ref|ZP_07853296.1| major cold shock protein CspA [Enterococcus faecium TX0082]
 gi|314953525|ref|ZP_07856437.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|314994272|ref|ZP_07859574.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|314995140|ref|ZP_07860256.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|227180431|gb|EEI61403.1| cold shock protein [Enterococcus faecium TX1330]
 gi|257814433|gb|EEV43191.1| cold-shock protein [Enterococcus faecium 1,230,933]
 gi|257818664|gb|EEV45992.1| cold-shock protein [Enterococcus faecium 1,231,502]
 gi|257821100|gb|EEV48234.1| cold-shock protein [Enterococcus faecium 1,231,501]
 gi|257824611|gb|EEV51543.1| cold-shock protein [Enterococcus faecium 1,141,733]
 gi|257827771|gb|EEV54397.1| cold-shock protein [Enterococcus faecium 1,231,410]
 gi|257829971|gb|EEV56578.1| cold-shock protein [Enterococcus faecium 1,231,408]
 gi|257833633|gb|EEV60054.1| cold-shock protein [Enterococcus faecium Com12]
 gi|257836918|gb|EEV61992.1| cold-shock protein [Enterococcus faecium Com15]
 gi|260073499|gb|EEW61827.1| cold-shock protein [Enterococcus faecium C68]
 gi|260077053|gb|EEW64775.1| cold-shock protein [Enterococcus faecium TC 6]
 gi|289162995|gb|EFD10843.1| cold shock-like protein cspD [Enterococcus faecium D344SRF]
 gi|291588017|gb|EFF19867.1| cold-shock protein [Enterococcus faecium E1071]
 gi|291591856|gb|EFF23489.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291594724|gb|EFF26106.1| cold shock protein [Enterococcus faecium E1679]
 gi|291598955|gb|EFF30003.1| cold-shock protein [Enterococcus faecium U0317]
 gi|291602666|gb|EFF32881.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291604768|gb|EFF34252.1| cold-shock protein [Enterococcus faecium E1162]
 gi|291607394|gb|EFF36737.1| cold-shock protein [Enterococcus faecium E980]
 gi|292642684|gb|EFF60836.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
 gi|313590631|gb|EFR69476.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|313591307|gb|EFR70152.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|313594448|gb|EFR73293.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|313597447|gb|EFR76292.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|313640937|gb|EFS05517.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|313643650|gb|EFS08230.1| major cold shock protein CspA [Enterococcus faecium TX0082]
          Length = 66

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFIT +G    GDDVF+H SA+   G  +L EGQ V +  V+  A
Sbjct: 1  MEHGTVKWFNNEKGFGFITVDG----GDDVFVHFSAIQGDGFKSLEEGQEVEFTIVEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +AE  KL
Sbjct: 56 RGPQAAEVTKL 66


>gi|170721149|ref|YP_001748837.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida W619]
 gi|169759152|gb|ACA72468.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
          Length = 70

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 3/52 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           +G++KW+N +KGYGFITP G    GDD+F+H  A+ S G  +L EGQ V++
Sbjct: 5  QQGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53


>gi|123443227|ref|YP_001007201.1| cold shock protein CspE [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|238752587|ref|ZP_04614060.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380]
 gi|332160847|ref|YP_004297424.1| cold shock protein CspE [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|122090188|emb|CAL13051.1| cold shock-like protein cspE1 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|238709178|gb|EEQ01423.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380]
 gi|318604749|emb|CBY26247.1| cold shock protein CspE [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|325665077|gb|ADZ41721.1| cold shock protein CspE [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330863376|emb|CBX73498.1| cold shock-like protein cspE [Yersinia enterocolitica W22703]
          Length = 69

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++ + + A G
Sbjct: 5  KGSVKWFNEAKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFE-ITSGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|119944855|ref|YP_942535.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119863459|gb|ABM02936.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 67

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 36/51 (70%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N DKG+GFITPE   E G+D+F+H S + + G   L EGQ V Y+
Sbjct: 4  GTVKWFNADKGFGFITPE---EGGNDLFVHHSQIKTGGYATLNEGQKVEYE 51


>gi|160938586|ref|ZP_02085938.1| hypothetical protein CLOBOL_03481 [Clostridium bolteae ATCC
          BAA-613]
 gi|158438285|gb|EDP16044.1| hypothetical protein CLOBOL_03481 [Clostridium bolteae ATCC
          BAA-613]
          Length = 67

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 41/54 (75%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +++G++KW+N  KG+GFIT E   E+G+D+F+H S +A+ G  +L +GQ VT+D
Sbjct: 1  MNKGTVKWFNSQKGFGFITNE---ENGEDIFVHFSGIATDGFKSLEDGQSVTFD 51


>gi|294498468|ref|YP_003562168.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295703813|ref|YP_003596888.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294348405|gb|ADE68734.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294801472|gb|ADF38538.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G +KW+N DKG+GFI  EG    G+DVF+H SA+   G  +L EGQ VT+D  Q
Sbjct: 1  MEHGKVKWFNADKGFGFIEREG----GEDVFVHFSAIQGEGFKSLDEGQEVTFDIEQ 53


>gi|255659158|ref|ZP_05404567.1| conserved domain protein [Mitsuokella multacida DSM 20544]
 gi|260848608|gb|EEX68615.1| conserved domain protein [Mitsuokella multacida DSM 20544]
          Length = 66

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P+KGYGFI  EG    GDDVF+H SA+   G   L EGQ V ++ V+  A G 
Sbjct: 3  GKVKWFSPEKGYGFIAREG----GDDVFVHFSAIQDEGFKTLNEGQDVEFEIVEG-ARGP 57

Query: 65 YSAENLK 71
           +A  +K
Sbjct: 58 QAANVIK 64


>gi|295704907|ref|YP_003597982.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294802566|gb|ADF39632.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G +KW+N DKG+GFI  EG    G+DVF+H SA+   G  +L EGQ VT+D  Q
Sbjct: 1  MEHGKVKWFNADKGFGFIEREG----GEDVFVHFSAIQGEGFKSLDEGQEVTFDIEQ 53


>gi|194016016|ref|ZP_03054631.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|194012371|gb|EDW21938.1| conserved domain protein [Bacillus pumilus ATCC 7061]
          Length = 67

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N +KG+GFI      E GDDVF+H SA+   G  +L EGQ VT+D  Q
Sbjct: 1  MEQGTVKWFNAEKGFGFI----EREEGDDVFVHFSAIQGDGFKSLDEGQKVTFDVEQ 53


>gi|146342873|ref|YP_001207921.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
 gi|146195679|emb|CAL79706.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
          Length = 71

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +LTEGQ ++++ V+ D
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFE-VEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KKGK 60


>gi|315641419|ref|ZP_07896492.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
 gi|315482806|gb|EFU73329.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
          Length = 72

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KG+GFIT E     G DVF+H SA+   G   L EGQ VT+D  ++D
Sbjct: 7  MEQGTVKWFNAEKGFGFITRE----DGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESD 61


>gi|293602670|ref|ZP_06685111.1| CspA family cold shock transcriptional regulator [Achromobacter
          piechaudii ATCC 43553]
 gi|311109651|ref|YP_003982504.1| cold shock protein CspB [Achromobacter xylosoxidans A8]
 gi|292818861|gb|EFF77901.1| CspA family cold shock transcriptional regulator [Achromobacter
          piechaudii ATCC 43553]
 gi|310764340|gb|ADP19789.1| cold shock protein CspB [Achromobacter xylosoxidans A8]
          Length = 68

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N DKGYGFITP+     G DVF H SA+   G  +L EGQ V ++ V++ 
Sbjct: 1  MAQKGKVKWFNADKGYGFITPD---VGGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56

Query: 61 ANGKYSAE 68
            G  +AE
Sbjct: 57 PKGPQAAE 64


>gi|225181189|ref|ZP_03734635.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
 gi|225168158|gb|EEG76963.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
          Length = 66

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI        GDDVF+H SA+ S G   L EGQ V ++ V  + N 
Sbjct: 2  QGKVKWFNAEKGFGFI----ERSDGDDVFVHFSAIQSEGFKTLEEGQTVEFEVV--EGNR 55

Query: 64 KYSAENLKLVP 74
             A N+ +VP
Sbjct: 56 GLQAANVTVVP 66


>gi|170746594|ref|YP_001752854.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653116|gb|ACB22171.1| cold-shock DNA-binding domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 259

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KWY+P KG+GF++     + G DVF+HRSA++ AGL +L EGQ VT   V+     +
Sbjct: 195 GTVKWYDPAKGFGFVS---VNDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGRE 251

Query: 65  YSAENLK 71
             + N++
Sbjct: 252 AQSINVE 258



 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 9/56 (16%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           ++KW+N +KG+GF+      E GD   D FLH  AV +AG  +L  G  +T    Q
Sbjct: 70  TVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHDDLMPGTRLTVTTAQ 119


>gi|26989186|ref|NP_744611.1| cold shock protein CspA [Pseudomonas putida KT2440]
 gi|148548435|ref|YP_001268537.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida F1]
 gi|325276815|ref|ZP_08142516.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
 gi|24984025|gb|AAN68075.1|AE016439_10 cold shock protein CspA [Pseudomonas putida KT2440]
 gi|63034352|gb|AAY28469.1| cold shock protein A-2 [Pseudomonas putida]
 gi|148512493|gb|ABQ79353.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
 gi|313499448|gb|ADR60814.1| Cold shock protein capa, fragment-related protein [Pseudomonas
          putida BIRD-1]
 gi|324098053|gb|EGB96198.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
          Length = 70

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 3/52 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           +G++KW+N +KGYGFITP G    GDD+F+H  A+ S G  +L EGQ V++
Sbjct: 5  QQGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53


>gi|317130282|ref|YP_004096564.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
 gi|315475230|gb|ADU31833.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
          Length = 67

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ V ++ V+  
Sbjct: 1  MNMQGKVKWFNAEKGFGFIEREG----GDDVFVHFSAIEQEGFKTLEEGQEVEFEIVEG- 55

Query: 61 ANGKYSAENLKL 72
          A G  ++  +KL
Sbjct: 56 ARGPQASNVVKL 67


>gi|257869999|ref|ZP_05649652.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2]
 gi|257804163|gb|EEV32985.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2]
          Length = 66

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KG+GFI    S E G DVF+H SA+   G   L EGQ VT+D  ++D
Sbjct: 1  MEQGTVKWFNAEKGFGFI----SREDGTDVFVHFSAIQGEGFKTLEEGQAVTFDVEESD 55


>gi|227822821|ref|YP_002826793.1| putative cold shock protein [Sinorhizobium fredii NGR234]
 gi|227341822|gb|ACP26040.1| putative cold shock protein [Sinorhizobium fredii NGR234]
          Length = 71

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 5/74 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI PE     G D+F+H SAV ++GL  L+E Q V++D  + D
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPE---NGGADIFVHISAVQASGLNGLSENQKVSFD-TEPD 56

Query: 61 ANGK-YSAENLKLV 73
            GK   A NL++V
Sbjct: 57 RRGKGPKAVNLQIV 70


>gi|325571663|ref|ZP_08147113.1| cold-shock domain family protein [Enterococcus casseliflavus ATCC
          12755]
 gi|325155708|gb|EGC67905.1| cold-shock domain family protein [Enterococcus casseliflavus ATCC
          12755]
          Length = 66

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +++G++KW+N DKG+GFIT     E G DVF H SA+ + G  +L EGQ VT+D
Sbjct: 1  MNKGTVKWFNSDKGFGFITG----EDGQDVFAHFSAIQADGFKSLDEGQAVTFD 50


>gi|239636591|ref|ZP_04677593.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239637686|ref|ZP_04678656.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239596711|gb|EEQ79238.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239597946|gb|EEQ80441.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|330684330|gb|EGG96063.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121]
 gi|330684668|gb|EGG96370.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121]
          Length = 66

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI      E G DVF+H SA+A  G  +L EGQ V +D V+ D 
Sbjct: 1  MNNGTVKWFNSEKGFGFI----EREDGSDVFVHFSAIAEEGYKSLEEGQKVEFDIVEGD- 55

Query: 62 NGKYSAENLKL 72
           G+ +A  +K+
Sbjct: 56 RGEQAANVVKM 66


>gi|157964818|ref|YP_001499642.1| cold shock-like protein [Rickettsia massiliae MTU5]
 gi|157844594|gb|ABV85095.1| Cold shock-like protein [Rickettsia massiliae MTU5]
          Length = 80

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  E     G DVF+H+SAV +AGL +L EGQ V +D    +  GK
Sbjct: 17 GKVKWYNSTKNFGFIEQENG---GKDVFVHKSAVDAAGLHSLEEGQDVIFDL--EEKQGK 71

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 72 AYAVNLRM 79


>gi|16262519|ref|NP_435312.1| CspA8 Cold shock family protein [Sinorhizobium meliloti 1021]
 gi|307300737|ref|ZP_07580512.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307319148|ref|ZP_07598578.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|14523127|gb|AAK64724.1| CspA8 Cold shock family protein [Sinorhizobium meliloti 1021]
 gi|306895255|gb|EFN26011.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306904271|gb|EFN34856.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 69

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ ++ EGQ + ++  +++ +GK
Sbjct: 4  GTVKWFNSTKGFGFIAPD---DGSADVFVHISAVERAGMNSIVEGQKLGFELERDNKSGK 60

Query: 65 YSAENLK 71
           SA  L+
Sbjct: 61 MSAGQLR 67


>gi|304415296|ref|ZP_07395986.1| cold shock protein [Candidatus Regiella insecticola LSR1]
 gi|304282851|gb|EFL91324.1| cold shock protein [Candidatus Regiella insecticola LSR1]
          Length = 71

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 4/65 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          H+G +KW+N  KG+GFITPE  ++   DVF+H SA+   G   L EGQ V++  ++N A 
Sbjct: 6  HKGQVKWFNESKGFGFITPEDGSK---DVFVHFSAIQDNGFKTLAEGQNVSFS-IENGAK 61

Query: 63 GKYSA 67
          G  +A
Sbjct: 62 GPSAA 66


>gi|238062414|ref|ZP_04607123.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|237884225|gb|EEP73053.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
          Length = 67

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFI+P+G    G DVF H SA++++G  +L E Q V +D  Q     +
Sbjct: 4  GTVKWFNADKGFGFISPDG---GGADVFAHFSAISASGFRSLDENQKVEFDITQGQKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENIR 65


>gi|85704998|ref|ZP_01036098.1| cold shock family protein [Roseovarius sp. 217]
 gi|149202366|ref|ZP_01879339.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
 gi|85670320|gb|EAQ25181.1| cold shock family protein [Roseovarius sp. 217]
 gi|149144464|gb|EDM32495.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
          Length = 68

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+G    G DVF+H SAV  +GL  L + Q V ++ +Q   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPDG---GGKDVFVHISAVERSGLTGLADNQKVGFE-LQEGRDGR 59

Query: 65 YSAENLKLV 73
            A +L+L+
Sbjct: 60 QMASDLRLL 68


>gi|254380603|ref|ZP_04995969.1| cold shock protein scoF [Streptomyces sp. Mg1]
 gi|194339514|gb|EDX20480.1| cold shock protein scoF [Streptomyces sp. Mg1]
          Length = 67

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H SA+ S+G   L EGQ+VT+D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSAINSSGFRELQEGQIVTFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|320449421|ref|YP_004201517.1| cold shock protein, CSD family [Thermus scotoductus SA-01]
 gi|320149590|gb|ADW20968.1| cold shock protein, CSD family [Thermus scotoductus SA-01]
          Length = 73

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 5/63 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  EG T    DVF+H SA+ + G   L EG +VT+D V+   
Sbjct: 1  MQKGRVKWFNAEKGYGFIEREGDT----DVFVHFSAINAKGFRTLNEGDIVTFD-VEPGK 55

Query: 62 NGK 64
          NGK
Sbjct: 56 NGK 58


>gi|261408402|ref|YP_003244643.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|315648512|ref|ZP_07901611.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|329929384|ref|ZP_08283132.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
 gi|261284865|gb|ACX66836.1| cold-shock DNA-binding domain protein [Paenibacillus sp.
          Y412MC10]
 gi|315276206|gb|EFU39552.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|328936471|gb|EGG32916.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
          Length = 65

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N +KGYGFI+ EG    G+DVF+H SA+   G  +L EGQ V +D  + +
Sbjct: 2  KGTVKWFNAEKGYGFISVEG----GEDVFVHFSAIQEEGFKSLEEGQAVEFDITEGN 54


>gi|328957137|ref|YP_004374523.1| cold shock protein CspA [Carnobacterium sp. 17-4]
 gi|328673461|gb|AEB29507.1| cold shock protein CspA [Carnobacterium sp. 17-4]
          Length = 66

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG    G+DVF+H SA+   G  +L EGQ V ++ V+ + 
Sbjct: 1  MEKGTVKWFNAEKGFGFIEVEG----GEDVFVHFSAITGDGFKSLEEGQAVEFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGAQAANVVKL 66


>gi|239946656|ref|ZP_04698409.1| conserved domain protein [Rickettsia endosymbiont of Ixodes
          scapularis]
 gi|239920932|gb|EER20956.1| conserved domain protein [Rickettsia endosymbiont of Ixodes
          scapularis]
          Length = 70

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  E     G DVF+H+SAV +AGL +L EGQ V +D    +  GK
Sbjct: 7  GKVKWYNSTKNFGFIEQENG---GKDVFVHKSAVDAAGLHSLEEGQDVIFDL--EEKQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAVNLRI 69


>gi|46203051|ref|ZP_00052170.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
           MS-1]
          Length = 263

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 3/53 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           G++KWY+P KG+GF++     + G DVF+HRSA++ AGL +L EGQ VT + V
Sbjct: 199 GTVKWYDPAKGFGFVS---VNDGGKDVFVHRSALSRAGLDSLAEGQQVTLNVV 248



 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 9/56 (16%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           ++KW+N +KG+GF+      E GD   D FLH  AV +AG  +L  G  +T    Q
Sbjct: 70  TVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQ 119


>gi|330469179|ref|YP_004406922.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
 gi|328812150|gb|AEB46322.1| cold-shock DNA-binding domain protein [Verrucosispora maris
          AB-18-032]
          Length = 67

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF+H SA+AS+G   LTEGQ V +D  Q
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GPDVFVHYSAIASSGYRELTEGQKVEFDVTQ 54


>gi|238790450|ref|ZP_04634220.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
 gi|238721476|gb|EEQ13146.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
          Length = 69

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++ +   A G
Sbjct: 5  KGSVKWFNEAKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFE-ITTGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|217969795|ref|YP_002355029.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
 gi|217507122|gb|ACK54133.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
          Length = 67

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITPE     GDD+F H SA+   G   L EGQ VT+D
Sbjct: 4  GTVKWFNDSKGFGFITPE---AGGDDLFAHFSAIQGQGFKTLAEGQRVTFD 51


>gi|316932717|ref|YP_004107699.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris DX-1]
 gi|315600431|gb|ADU42966.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          DX-1]
          Length = 70

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +LTEGQ ++++ V+ D
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFE-VEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KKGK 60


>gi|92118615|ref|YP_578344.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91801509|gb|ABE63884.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 71

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL  L+EGQ VT++ V+ D
Sbjct: 1  MSMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVEQAGLTELSEGQRVTFE-VEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KKGK 60


>gi|288556195|ref|YP_003428130.1| major cold shock protein [Bacillus pseudofirmus OF4]
 gi|288547355|gb|ADC51238.1| major cold shock protein [Bacillus pseudofirmus OF4]
          Length = 66

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ VT++ V+ +
Sbjct: 3  EGTVKWFNAEKGFGFIEREG----GDDVFVHFSAIQIDGFKTLEEGQAVTFEIVEGN 55


>gi|124514284|gb|EAY55798.1| cold shock protein [Leptospirillum rubarum]
          Length = 52

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          RG +KW+N +KGYGFI    S E+G+D+F+H SA+  +G   L EGQLV ++
Sbjct: 3  RGHVKWFNANKGYGFI----SQENGEDIFVHYSAIGGSGFKTLEEGQLVEFE 50


>gi|16974803|pdb|1HZA|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
 gi|16974804|pdb|1HZA|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
          Length = 67

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + RG +KW+N +KGYGFI  EG    G DVF+H +A+   G   L EGQ V+++ VQ +
Sbjct: 1  MQRGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN 55


>gi|288556391|ref|YP_003428326.1| cold-shock DNA-binding protein family protein [Bacillus
          pseudofirmus OF4]
 gi|288547551|gb|ADC51434.1| cold-shock DNA-binding protein family protein [Bacillus
          pseudofirmus OF4]
          Length = 66

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N +KG+GFI  EG    GDDVF+H SA+   G  +L EGQ VT++  Q
Sbjct: 1  MEQGTVKWFNAEKGFGFIEIEG----GDDVFVHFSAIQGEGFKSLDEGQKVTFETEQ 53


>gi|126725654|ref|ZP_01741496.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2150]
 gi|126704858|gb|EBA03949.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2150]
          Length = 68

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE   + G DVF+H SAV  AGL  L++ Q V YD ++   +G+
Sbjct: 4  GTVKWFNQTKGFGFIAPE---DGGSDVFVHISAVERAGLTGLSDNQKVQYD-LEEGRDGR 59

Query: 65 YSAENLKL 72
            A N+ L
Sbjct: 60 SLAANIVL 67


>gi|116493183|ref|YP_804918.1| cold-shock DNA-binding protein family protein [Pediococcus
          pentosaceus ATCC 25745]
 gi|116103333|gb|ABJ68476.1| cold-shock DNA-binding protein family [Pediococcus pentosaceus
          ATCC 25745]
          Length = 66

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKG+GFIT     E G DVF+H SA+   G   L EGQ V++D  ++D
Sbjct: 1  MEQGTVKWFNADKGFGFIT----REDGSDVFVHFSAIQGDGFKTLEEGQAVSFDVEESD 55


>gi|319944075|ref|ZP_08018354.1| cold shock transcription regulator protein [Lautropia mirabilis
          ATCC 51599]
 gi|319742652|gb|EFV95060.1| cold shock transcription regulator protein [Lautropia mirabilis
          ATCC 51599]
          Length = 68

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   E G+D+F H S+V + G   L EGQ V++D VQ
Sbjct: 4  GTVKWFNDAKGFGFITPD---EGGEDLFAHFSSVQTQGFKTLKEGQKVSFDVVQ 54


>gi|313884810|ref|ZP_07818562.1| major cold shock protein CspA [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312619501|gb|EFR30938.1| major cold shock protein CspA [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 66

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI  +G     DDVF+H SA+ S G   L EGQ V++D +++ A G
Sbjct: 3  EGKVKWFNADKGFGFIERDGE----DDVFVHFSAIQSEGFKTLEEGQAVSFD-IEDGARG 57

Query: 64 KYSAENLKL 72
            +A   K+
Sbjct: 58 PQAANVEKI 66


>gi|307313742|ref|ZP_07593360.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|306899232|gb|EFN29869.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 67

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKG+GFITPE     G DVF+H SA+   G  +L EG  V+Y+  Q+   GK
Sbjct: 4  GTVKFFNDDKGFGFITPE---NGGTDVFVHVSALQRGG--SLKEGDKVSYEVGQDRKTGK 58

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 59 SKAENVSVL 67


>gi|228923915|ref|ZP_04087192.1| hypothetical protein bthur0011_48890 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228835714|gb|EEM81078.1| hypothetical protein bthur0011_48890 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
          Length = 65

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E GDDVF+H SA+   G  +L EGQ V +D V + A G
Sbjct: 2  QGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGFKSLEEGQQVEFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|163859299|ref|YP_001633597.1| cold shock protein [Bordetella petrii DSM 12804]
 gi|163263027|emb|CAP45330.1| cold shock protein [Bordetella petrii]
          Length = 68

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          MV +G +KW+N DKG+GFITP+     G DVF H SA+   G  +L EGQ V ++ V++ 
Sbjct: 1  MVQKGKVKWFNADKGFGFITPDA---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56

Query: 61 ANGKYSAE 68
            G  +A+
Sbjct: 57 PKGPQAAD 64


>gi|332286174|ref|YP_004418085.1| putative cold shock-like protein [Pusillimonas sp. T7-7]
 gi|330430127|gb|AEC21461.1| putative cold shock-like protein [Pusillimonas sp. T7-7]
          Length = 68

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N DKG+GFITP+     G DVF H SA+   G  +L EGQ V ++ V++ 
Sbjct: 1  MAQKGKVKWFNADKGFGFITPDA---GGTDVFAHFSAIEGRGYRSLNEGQEVEFE-VKDG 56

Query: 61 ANGKYSAE 68
            G  +AE
Sbjct: 57 PKGPQAAE 64


>gi|260433151|ref|ZP_05787122.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416979|gb|EEX10238.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 68

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   E G DVF+H SAV  +GL  L + Q V+Y+ +++  +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVSYE-LEDGRDGR 59

Query: 65 YSAENLK 71
            A +LK
Sbjct: 60 QMAADLK 66


>gi|16127133|ref|NP_421697.1| cold-shock domain-contain protein [Caulobacter crescentus CB15]
 gi|221235933|ref|YP_002518370.1| cold shock protein [Caulobacter crescentus NA1000]
 gi|13424521|gb|AAK24865.1| cold-shock domain family protein [Caulobacter crescentus CB15]
 gi|220965106|gb|ACL96462.1| cold shock protein [Caulobacter crescentus NA1000]
          Length = 69

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G D+F+H SAV  +GL +L EGQ ++Y+   +  +GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---NGGADIFVHISAVERSGLGSLNEGQKISYEPEVDRRSGK 60

Query: 65 YSAENLK 71
           SA  L+
Sbjct: 61 TSAGQLQ 67


>gi|16974805|pdb|1HZB|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
 gi|16974806|pdb|1HZB|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
          Length = 66

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + RG +KW+N +KGYGFI  EG    G DVF+H +A+   G   L EGQ V+++ VQ +
Sbjct: 1  MQRGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN 55


>gi|81428382|ref|YP_395382.1| cold shock protein CspA family protein [Lactobacillus sakei
          subsp. sakei 23K]
 gi|78610024|emb|CAI55072.1| Similar to cold shock protein, CspA family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 66

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N +KG+GFI+ EG     DD+F+H SA+   G  +L EGQ V +D V+
Sbjct: 1  MEKGTVKWFNNEKGFGFISVEGQ----DDIFVHFSAIQDEGFKSLEEGQAVEFDIVE 53


>gi|312795290|ref|YP_004028212.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
 gi|312167065|emb|CBW74068.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
          Length = 98

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFITP+   E G+D+F H SA+   G   L EGQ V+++ VQ
Sbjct: 34 GTVKWFNDAKGYGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVSFEVVQ 84


>gi|42784343|ref|NP_981590.1| cold shock protein CspC [Bacillus cereus ATCC 10987]
 gi|206976819|ref|ZP_03237722.1| cold shock protein CspC [Bacillus cereus H3081.97]
 gi|217962672|ref|YP_002341246.1| cold shock protein CspC [Bacillus cereus AH187]
 gi|222098643|ref|YP_002532701.1| cold shock protein cspc [Bacillus cereus Q1]
 gi|42740274|gb|AAS44198.1| cold shock protein CspC [Bacillus cereus ATCC 10987]
 gi|206744954|gb|EDZ56358.1| cold shock protein CspC [Bacillus cereus H3081.97]
 gi|217063489|gb|ACJ77739.1| cold shock protein CspC [Bacillus cereus AH187]
 gi|221242702|gb|ACM15412.1| cold shock protein CspC [Bacillus cereus Q1]
 gi|324329136|gb|ADY24396.1| cold shock protein CspC [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 67

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N +KG+GFI      E GDDVF+H SA+   G  +L EGQ V +D V+  
Sbjct: 1  MNMQGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVEG- 55

Query: 61 ANGKYSAENLKL 72
          A G  +A  +KL
Sbjct: 56 ARGPQAANVVKL 67


>gi|332976448|gb|EGK13296.1| cold shock protein CspA [Desmospora sp. 8437]
          Length = 77

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFI  EG     DDVF+H SA+ S G  +L EG  V+++ VQ +  G
Sbjct: 14 EGTVKWFNADKGFGFIEVEGR----DDVFVHFSAIQSEGFKSLDEGDKVSFEIVQGN-RG 68

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 69 DQAANVVKL 77


>gi|150377277|ref|YP_001313872.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|150031824|gb|ABR63939.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
          Length = 69

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ ++ EGQ + ++  +++ +GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---DGSADVFVHISAVERAGMNSIVEGQKLGFELERDNKSGK 60

Query: 65 YSAENLK 71
           SA  L+
Sbjct: 61 MSAGQLR 67


>gi|39995688|ref|NP_951639.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA]
 gi|39982452|gb|AAR33912.1| cold-shock domain family protein [Geobacter sulfurreducens PCA]
 gi|298504699|gb|ADI83422.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
          KN400]
          Length = 66

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KGYGFI      E+G+DVF+H S++   G   L EGQ VT+D VQ  A G
Sbjct: 3  KGVVKWFNDSKGYGFI----EQENGEDVFVHFSSIQGDGFKTLVEGQAVTFDVVQG-AKG 57

Query: 64 KYSAENLK 71
            +A  +K
Sbjct: 58 LQAANVMK 65


>gi|261341246|ref|ZP_05969104.1| putative cold shock protein [Enterobacter cancerogenus ATCC
          35316]
 gi|288316550|gb|EFC55488.1| putative cold shock protein [Enterobacter cancerogenus ATCC
          35316]
          Length = 69

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++ + N A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVMAL 69


>gi|289209718|ref|YP_003461784.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          K90mix]
 gi|288945349|gb|ADC73048.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          K90mix]
          Length = 67

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N  KG+GFITP+   + G DVF+H SA++ +G   L EGQ V+++ +Q  A
Sbjct: 1  MNTGVVKWFNESKGFGFITPD---DGGKDVFVHFSAISGSGFKTLAEGQKVSFE-IQETA 56

Query: 62 NGKYSAENLKL 72
           G  + E   L
Sbjct: 57 KGLAAGEVTAL 67


>gi|254461497|ref|ZP_05074913.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium HTCC2083]
 gi|206678086|gb|EDZ42573.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacteraceae
          bacterium HTCC2083]
          Length = 68

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G ++   DVF+H SAV  +GL  L + Q VT+D ++   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERSGLTGLADNQKVTFD-IEPGRDGR 59

Query: 65 YSAENLKL 72
           +A N+ L
Sbjct: 60 EAAINIAL 67


>gi|84687901|ref|ZP_01015768.1| cold shock family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84664095|gb|EAQ10592.1| cold shock family protein [Rhodobacterales bacterium HTCC2654]
          Length = 68

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H SAV  AG+  L + Q V+Y+ +    +G+
Sbjct: 4  GTVKWFNATKGYGFIAPD---DGGKDVFVHISAVERAGMTGLADNQKVSYEMIPG-RDGR 59

Query: 65 YSAENLKLV 73
           SA +LK +
Sbjct: 60 ESAGDLKAL 68


>gi|229544336|ref|ZP_04433395.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
 gi|229325475|gb|EEN91151.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
          Length = 67

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KGYGFI  EG    GDDVF+H +A+   G   L EGQ V++D V+ +
Sbjct: 1  MQNGKVKWFNNEKGYGFIEVEG----GDDVFVHFTAIQGEGFKTLEEGQAVSFDIVEGN 55


>gi|29375372|ref|NP_814526.1| cold shock domain-contain protein [Enterococcus faecalis V583]
 gi|227517748|ref|ZP_03947797.1| cold-shock protein [Enterococcus faecalis TX0104]
 gi|227554895|ref|ZP_03984942.1| cold-shock protein [Enterococcus faecalis HH22]
 gi|229546635|ref|ZP_04435360.1| cold-shock protein [Enterococcus faecalis TX1322]
 gi|229548721|ref|ZP_04437446.1| cold-shock protein [Enterococcus faecalis ATCC 29200]
 gi|255971235|ref|ZP_05421821.1| cold-shock protein [Enterococcus faecalis T1]
 gi|255973859|ref|ZP_05424445.1| cold-shock protein [Enterococcus faecalis T2]
 gi|256617665|ref|ZP_05474511.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
 gi|256761545|ref|ZP_05502125.1| cold-shock protein [Enterococcus faecalis T3]
 gi|256854357|ref|ZP_05559721.1| cold shock domain-contain protein [Enterococcus faecalis T8]
 gi|256957355|ref|ZP_05561526.1| cold-shock protein [Enterococcus faecalis DS5]
 gi|256959910|ref|ZP_05564081.1| cold-shock protein [Enterococcus faecalis Merz96]
 gi|256964386|ref|ZP_05568557.1| cold-shock protein [Enterococcus faecalis HIP11704]
 gi|257077649|ref|ZP_05572010.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|257081040|ref|ZP_05575401.1| cold shock domain-containing protein [Enterococcus faecalis
          E1Sol]
 gi|257083701|ref|ZP_05578062.1| cold shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|257086135|ref|ZP_05580496.1| cold-shock protein [Enterococcus faecalis D6]
 gi|257089207|ref|ZP_05583568.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257415348|ref|ZP_05592342.1| cold-shock protein [Enterococcus faecalis AR01/DG]
 gi|257418385|ref|ZP_05595379.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257421034|ref|ZP_05598024.1| cold shock protein [Enterococcus faecalis X98]
 gi|293385225|ref|ZP_06631042.1| cold shock protein B [Enterococcus faecalis R712]
 gi|293388340|ref|ZP_06632852.1| cold shock protein B [Enterococcus faecalis S613]
 gi|294781498|ref|ZP_06746837.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          PC1.1]
 gi|300859962|ref|ZP_07106050.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
 gi|307270162|ref|ZP_07551479.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX4248]
 gi|307271388|ref|ZP_07552663.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0855]
 gi|307276241|ref|ZP_07557370.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX2134]
 gi|307284456|ref|ZP_07564619.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0860]
 gi|307289526|ref|ZP_07569472.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0109]
 gi|307296199|ref|ZP_07576027.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0411]
 gi|312901759|ref|ZP_07761028.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0470]
 gi|312904195|ref|ZP_07763358.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0635]
 gi|312907148|ref|ZP_07766140.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          DAPTO 512]
 gi|312951852|ref|ZP_07770741.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0102]
 gi|312979273|ref|ZP_07790972.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          DAPTO 516]
 gi|29342832|gb|AAO80596.1| cold shock domain family protein [Enterococcus faecalis V583]
 gi|227074804|gb|EEI12767.1| cold-shock protein [Enterococcus faecalis TX0104]
 gi|227175977|gb|EEI56949.1| cold-shock protein [Enterococcus faecalis HH22]
 gi|229306158|gb|EEN72154.1| cold-shock protein [Enterococcus faecalis ATCC 29200]
 gi|229308202|gb|EEN74189.1| cold-shock protein [Enterococcus faecalis TX1322]
 gi|255962253|gb|EET94729.1| cold-shock protein [Enterococcus faecalis T1]
 gi|255966731|gb|EET97353.1| cold-shock protein [Enterococcus faecalis T2]
 gi|256597192|gb|EEU16368.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
 gi|256682796|gb|EEU22491.1| cold-shock protein [Enterococcus faecalis T3]
 gi|256709917|gb|EEU24961.1| cold shock domain-contain protein [Enterococcus faecalis T8]
 gi|256947851|gb|EEU64483.1| cold-shock protein [Enterococcus faecalis DS5]
 gi|256950406|gb|EEU67038.1| cold-shock protein [Enterococcus faecalis Merz96]
 gi|256954882|gb|EEU71514.1| cold-shock protein [Enterococcus faecalis HIP11704]
 gi|256985679|gb|EEU72981.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|256989070|gb|EEU76372.1| cold shock domain-containing protein [Enterococcus faecalis
          E1Sol]
 gi|256991731|gb|EEU79033.1| cold shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|256994165|gb|EEU81467.1| cold-shock protein [Enterococcus faecalis D6]
 gi|256998019|gb|EEU84539.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257157176|gb|EEU87136.1| cold-shock protein [Enterococcus faecalis ARO1/DG]
 gi|257160213|gb|EEU90173.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257162858|gb|EEU92818.1| cold shock protein [Enterococcus faecalis X98]
 gi|291077522|gb|EFE14886.1| cold shock protein B [Enterococcus faecalis R712]
 gi|291082282|gb|EFE19245.1| cold shock protein B [Enterococcus faecalis S613]
 gi|294451428|gb|EFG19891.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          PC1.1]
 gi|300850780|gb|EFK78529.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
 gi|306496073|gb|EFM65655.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0411]
 gi|306499544|gb|EFM68915.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0109]
 gi|306503264|gb|EFM72517.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0860]
 gi|306507097|gb|EFM76238.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX2134]
 gi|306511920|gb|EFM80915.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0855]
 gi|306513531|gb|EFM82146.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX4248]
 gi|310626859|gb|EFQ10142.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          DAPTO 512]
 gi|310630150|gb|EFQ13433.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0102]
 gi|310632460|gb|EFQ15743.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0635]
 gi|311287931|gb|EFQ66487.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          DAPTO 516]
 gi|311291228|gb|EFQ69784.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0470]
 gi|315027570|gb|EFT39502.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX2137]
 gi|315029859|gb|EFT41791.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX4000]
 gi|315031281|gb|EFT43213.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0017]
 gi|315035333|gb|EFT47265.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0027]
 gi|315145280|gb|EFT89296.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX2141]
 gi|315148239|gb|EFT92255.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX4244]
 gi|315151651|gb|EFT95667.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0012]
 gi|315153201|gb|EFT97217.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0031]
 gi|315154850|gb|EFT98866.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0043]
 gi|315159935|gb|EFU03952.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0312]
 gi|315161978|gb|EFU05995.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0645]
 gi|315164631|gb|EFU08648.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX1302]
 gi|315167012|gb|EFU11029.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX1341]
 gi|315170889|gb|EFU14906.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX1342]
 gi|315174689|gb|EFU18706.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX1346]
 gi|315573437|gb|EFU85628.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0309B]
 gi|315578025|gb|EFU90216.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0630]
 gi|315581320|gb|EFU93511.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0309A]
 gi|323479972|gb|ADX79411.1| cold shock protein CspC [Enterococcus faecalis 62]
 gi|327534366|gb|AEA93200.1| cold shock protein B [Enterococcus faecalis OG1RF]
 gi|329577634|gb|EGG59065.1| cold shock protein CspA [Enterococcus faecalis TX1467]
          Length = 66

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N DKG+GFIT E     G+DVF H SA+ S G   L EGQ VT+D
Sbjct: 1  MNNGTVKWFNADKGFGFITGE----DGNDVFAHFSAIQSDGFKTLDEGQAVTFD 50


>gi|74095589|emb|CAJ27355.1| strongly similar to cold shock-like protein cspE [Cronobacter
          sakazakii]
          Length = 79

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++ + N A G
Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 70

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 71 PSAANVIAL 79


>gi|240139725|ref|YP_002964202.1| putative transcriptional regulator, cold shock protein
           [Methylobacterium extorquens AM1]
 gi|254562138|ref|YP_003069233.1| transcriptional regulator, cold shock protein [Methylobacterium
           extorquens DM4]
 gi|240009699|gb|ACS40925.1| putative transcriptional regulator, cold shock protein
           [Methylobacterium extorquens AM1]
 gi|254269416|emb|CAX25382.1| putative transcriptional regulator, cold shock protein
           [Methylobacterium extorquens DM4]
          Length = 278

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KWY+P KG+GF++     + G DVF+HRSA++ AGL +L EGQ VT   V+
Sbjct: 214 GTVKWYDPAKGFGFVS---VNDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVE 264



 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           ++KW+N +KG+GF+      E GD   D FLH  AV +AG  +L  G  +T    Q    
Sbjct: 81  TVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKG 134

Query: 63  GKYSAEN 69
            + +A N
Sbjct: 135 PQVTAVN 141


>gi|222152818|ref|YP_002561995.1| cold shock protein [Streptococcus uberis 0140J]
 gi|222113631|emb|CAR41517.1| cold shock protein [Streptococcus uberis 0140J]
          Length = 67

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI    S E+GDDVF H SA+ S G  +L EGQ V +D  Q
Sbjct: 3  QGTVKWFNAEKGFGFI----SQENGDDVFAHFSAIQSDGFKSLDEGQKVEFDIEQ 53


>gi|218531150|ref|YP_002421966.1| cold-shock DNA-binding domain protein [Methylobacterium
           chloromethanicum CM4]
 gi|218523453|gb|ACK84038.1| cold-shock DNA-binding domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 279

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KWY+P KG+GF++     + G DVF+HRSA++ AGL +L EGQ VT   V+
Sbjct: 215 GTVKWYDPAKGFGFVS---VNDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVE 265



 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           ++KW+N +KG+GF+      E GD   D FLH  AV +AG  +L  G  +T    Q    
Sbjct: 81  TVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKG 134

Query: 63  GKYSAEN 69
            + +A N
Sbjct: 135 PQVTAVN 141


>gi|163852391|ref|YP_001640434.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|163663996|gb|ABY31363.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
          Length = 281

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KWY+P KG+GF++     + G DVF+HRSA++ AGL +L EGQ VT   V+
Sbjct: 217 GTVKWYDPAKGFGFVS---VNDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVE 267



 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           ++KW+N +KG+GF+      E GD   D FLH  AV +AG  +L  G  +T    Q    
Sbjct: 81  TVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKG 134

Query: 63  GKYSAEN 69
            + +A N
Sbjct: 135 PQVTAVN 141


>gi|297584713|ref|YP_003700493.1| cold-shock DNA-binding domain-containing protein [Bacillus
          selenitireducens MLS10]
 gi|297143170|gb|ADH99927.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens
          MLS10]
          Length = 65

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ VT+D  Q
Sbjct: 3  QGTVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVTFDIEQ 53


>gi|295696398|ref|YP_003589636.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
 gi|295412000|gb|ADG06492.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
          Length = 65

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI      E G DVF+H SA+   G  +L EGQLV +D V+  A G
Sbjct: 2  QGRVKWFNAEKGYGFI----EREDGGDVFVHFSAIQQDGFKSLEEGQLVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +K+
Sbjct: 57 PQAANVVKV 65


>gi|188582398|ref|YP_001925843.1| cold-shock DNA-binding domain protein [Methylobacterium populi
           BJ001]
 gi|179345896|gb|ACB81308.1| cold-shock DNA-binding domain protein [Methylobacterium populi
           BJ001]
          Length = 268

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 3/55 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G++KWY+P KG+GF++     + G DVF+HRSA++ AGL +L EGQ VT   V+ 
Sbjct: 204 GTVKWYDPAKGFGFVS---VNDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEG 255



 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           ++KW+N +KG+GF+      E GD   D FLH  AV +AG  +L  G  +T    Q    
Sbjct: 78  TVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKG 131

Query: 63  GKYSAEN 69
            + +A N
Sbjct: 132 PQVTAVN 138


>gi|126733686|ref|ZP_01749433.1| cold shock protein CspA-related protein, putative [Roseobacter
          sp. CCS2]
 gi|126716552|gb|EBA13416.1| cold shock protein CspA-related protein, putative [Roseobacter
          sp. CCS2]
          Length = 69

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+G ++   DVF+H SAV  +GL  L + Q V +D ++   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERSGLTGLKDDQKVNFD-IEAGRDGR 59

Query: 65 YSAENLKL 72
           SA NL L
Sbjct: 60 ESAVNLTL 67


>gi|114768941|ref|ZP_01446567.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
          HTCC2255]
 gi|114549858|gb|EAU52739.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
          HTCC2255]
          Length = 68

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P    + G DVF+H +AV +AGL  L + Q V+Y+  + + NGK
Sbjct: 4  GTVKWFNGTKGYGFIAP---ADGGADVFVHITAVQAAGLQGLEDDQKVSYELEEGN-NGK 59

Query: 65 YSAENLKL 72
           +A N+ L
Sbjct: 60 QNATNIAL 67


>gi|28869573|ref|NP_792192.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|71734745|ref|YP_274352.1| cold shock protein CapA [Pseudomonas syringae pv. phaseolicola
          1448A]
 gi|213970497|ref|ZP_03398624.1| cold shock protein CapA [Pseudomonas syringae pv. tomato T1]
 gi|237801017|ref|ZP_04589478.1| cold shock protein CapA [Pseudomonas syringae pv. oryzae str.
          1_6]
 gi|257486174|ref|ZP_05640215.1| cold shock protein CapA [Pseudomonas syringae pv. tabaci ATCC
          11528]
 gi|289623638|ref|ZP_06456592.1| cold shock protein CapA [Pseudomonas syringae pv. aesculi str.
          NCPPB3681]
 gi|289647144|ref|ZP_06478487.1| cold shock protein CapA [Pseudomonas syringae pv. aesculi str.
          2250]
 gi|298486699|ref|ZP_07004756.1| cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB
          3335]
 gi|301384172|ref|ZP_07232590.1| cold shock protein CapA [Pseudomonas syringae pv. tomato Max13]
 gi|302063987|ref|ZP_07255528.1| cold shock protein CapA [Pseudomonas syringae pv. tomato K40]
 gi|302132645|ref|ZP_07258635.1| cold shock protein CapA [Pseudomonas syringae pv. tomato NCPPB
          1108]
 gi|28852815|gb|AAO55887.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|71555298|gb|AAZ34509.1| cold shock protein CapA [Pseudomonas syringae pv. phaseolicola
          1448A]
 gi|213924668|gb|EEB58236.1| cold shock protein CapA [Pseudomonas syringae pv. tomato T1]
 gi|298158782|gb|EFH99845.1| cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB
          3335]
 gi|320324300|gb|EFW80379.1| cold shock protein CapA [Pseudomonas syringae pv. glycinea str.
          B076]
 gi|320328578|gb|EFW84580.1| cold shock protein CapA [Pseudomonas syringae pv. glycinea str.
          race 4]
 gi|330888313|gb|EGH20974.1| cold shock protein CapA [Pseudomonas syringae pv. mori str.
          301020]
 gi|331016141|gb|EGH96197.1| cold shock protein CapA [Pseudomonas syringae pv. lachrymans str.
          M302278PT]
 gi|331023874|gb|EGI03931.1| cold shock protein CapA [Pseudomonas syringae pv. oryzae str.
          1_6]
          Length = 70

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ V++
Sbjct: 7  GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53


>gi|241554075|ref|YP_002979288.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240863381|gb|ACS61043.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 67

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKG+GFITPE     G DVF+H SA+   G  +L EG  V+++  Q+   GK
Sbjct: 4  GTVKFFNDDKGFGFITPE---NGGQDVFVHVSALQRGG--SLREGDKVSFEVGQDRKTGK 58

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 59 SKAENVSVL 67


>gi|27382579|ref|NP_774108.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27355751|dbj|BAC52733.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 71

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +L EGQ +T++ V+ D
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLAEGQRITFE-VEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KKGK 60


>gi|229591581|ref|YP_002873700.1| major cold shock protein [Pseudomonas fluorescens SBW25]
 gi|229363447|emb|CAY50649.1| major cold shock protein [Pseudomonas fluorescens SBW25]
          Length = 70

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ V++
Sbjct: 7  GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53


>gi|83942901|ref|ZP_00955361.1| cold shock family protein [Sulfitobacter sp. EE-36]
 gi|83954075|ref|ZP_00962795.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
 gi|83841112|gb|EAP80282.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
 gi|83845909|gb|EAP83786.1| cold shock family protein [Sulfitobacter sp. EE-36]
          Length = 68

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PEG    G DVF+H SAV  +GL  L + Q V+++  +   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPEG---GGSDVFVHISAVERSGLTGLADEQKVSFEMSEG-RDGR 59

Query: 65 YSAENLKLV 73
            A +L+L+
Sbjct: 60 QMATDLELL 68


>gi|326384649|ref|ZP_08206327.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
          NRRL B-59395]
 gi|326196616|gb|EGD53812.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
          NRRL B-59395]
          Length = 67

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P+     G+DVF+H SA+A +G  NL E Q V +D  Q
Sbjct: 3  QGTVKWFNGEKGFGFIAPD---NGGEDVFVHFSAIAGSGFRNLEEAQRVEFDLEQ 54


>gi|293401962|ref|ZP_06646102.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291304620|gb|EFE45869.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 66

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N +KGYGFIT    ++ G DVF+H S++ S G   L EGQ V++D V +D
Sbjct: 4  GKVKWFNAEKGYGFIT----SDEGKDVFVHYSSIQSDGFRTLEEGQRVSFDVVDSD 55


>gi|225174262|ref|ZP_03728261.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
 gi|225170047|gb|EEG78842.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
          Length = 65

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFI     T  G+DVF+H SA+ + G  NL EGQ V++D V+
Sbjct: 3  GKVKWFNSDKGFGFI----ETSEGNDVFVHFSAIQAEGFKNLEEGQDVSFDVVE 52


>gi|260597049|ref|YP_003209620.1| cold shock protein CspE [Cronobacter turicensis z3032]
 gi|260216226|emb|CBA29122.1| Cold shock-like protein cspE [Cronobacter turicensis z3032]
          Length = 97

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++ + N A G
Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 88

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 89 PSAANVIAL 97


>gi|257880622|ref|ZP_05660275.1| cold shock protein CspC [Enterococcus faecium 1,230,933]
 gi|257883616|ref|ZP_05663269.1| cold shock protein CspC [Enterococcus faecium 1,231,502]
 gi|261209714|ref|ZP_05924033.1| cold shock protein CspC [Enterococcus faecium TC 6]
 gi|289567769|ref|ZP_06448041.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
 gi|293556143|ref|ZP_06674737.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293556264|ref|ZP_06674851.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293568900|ref|ZP_06680213.1| cold-shock protein [Enterococcus faecium E1071]
 gi|293572638|ref|ZP_06683609.1| cold-shock protein [Enterococcus faecium E980]
 gi|294615448|ref|ZP_06695318.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294615452|ref|ZP_06695321.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294623464|ref|ZP_06702315.1| cold shock protein [Enterococcus faecium U0317]
 gi|257814850|gb|EEV43608.1| cold shock protein CspC [Enterococcus faecium 1,230,933]
 gi|257819274|gb|EEV46602.1| cold shock protein CspC [Enterococcus faecium 1,231,502]
 gi|260076316|gb|EEW64124.1| cold shock protein CspC [Enterococcus faecium TC 6]
 gi|289160436|gb|EFD08464.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
 gi|291588333|gb|EFF20168.1| cold-shock protein [Enterococcus faecium E1071]
 gi|291591688|gb|EFF23328.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291591694|gb|EFF23333.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291597125|gb|EFF28325.1| cold shock protein [Enterococcus faecium U0317]
 gi|291601573|gb|EFF31838.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291601684|gb|EFF31942.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291607335|gb|EFF36686.1| cold-shock protein [Enterococcus faecium E980]
          Length = 65

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N DKG+GFIT E     G+DVF H SA+   G  +L EGQ VTYD
Sbjct: 1  MNNGTVKWFNSDKGFGFITGE----DGNDVFAHFSAIQGEGFKSLDEGQAVTYD 50


>gi|86748304|ref|YP_484800.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris HaA2]
 gi|86571332|gb|ABD05889.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          HaA2]
          Length = 70

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M + G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +LTEGQ ++++ V+ D
Sbjct: 1  MPNTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFE-VEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KKGK 60


>gi|254381183|ref|ZP_04996548.1| cold shock protein scoF [Streptomyces sp. Mg1]
 gi|254381243|ref|ZP_04996608.1| cold shock protein scoF [Streptomyces sp. Mg1]
 gi|254381451|ref|ZP_04996815.1| cold shock protein scoF [Streptomyces sp. Mg1]
 gi|194340093|gb|EDX21059.1| cold shock protein scoF [Streptomyces sp. Mg1]
 gi|194340153|gb|EDX21119.1| cold shock protein scoF [Streptomyces sp. Mg1]
 gi|194340360|gb|EDX21326.1| cold shock protein scoF [Streptomyces sp. Mg1]
          Length = 67

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H SA+ S+G   L EGQ+VT+D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSAINSSGFRELQEGQVVTFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|238893691|ref|YP_002918425.1| cold shock protein CspE [Klebsiella pneumoniae NTUH-K2044]
 gi|238546007|dbj|BAH62358.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
          Length = 97

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++ + N A G
Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 88

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 89 PSAANVIAL 97


>gi|167745412|ref|ZP_02417539.1| hypothetical protein ANACAC_00103 [Anaerostipes caccae DSM 14662]
 gi|317473040|ref|ZP_07932340.1| cold-shock DNA-binding domain-containing protein [Anaerostipes
          sp. 3_2_56FAA]
 gi|167655133|gb|EDR99262.1| hypothetical protein ANACAC_00103 [Anaerostipes caccae DSM 14662]
 gi|316899469|gb|EFV21483.1| cold-shock DNA-binding domain-containing protein [Anaerostipes
          sp. 3_2_56FAA]
          Length = 67

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N +KGYGFI+ EG    GDDVF+H SA++  G   L EGQ V+++  +
Sbjct: 1  MNTGTVKWFNSEKGYGFISQEG----GDDVFVHFSAISGDGFKTLEEGQQVSFEIAE 53


>gi|152969227|ref|YP_001334336.1| cold shock protein CspE [Klebsiella pneumoniae subsp. pneumoniae
          MGH 78578]
 gi|156934856|ref|YP_001438772.1| cold shock protein CspE [Cronobacter sakazakii ATCC BAA-894]
 gi|262041285|ref|ZP_06014496.1| CspA family cold shock transcriptional regulator [Klebsiella
          pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|296103410|ref|YP_003613556.1| cold shock protein CspE [Enterobacter cloacae subsp. cloacae ATCC
          13047]
 gi|330006059|ref|ZP_08305477.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
 gi|150954076|gb|ABR76106.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
 gi|156533110|gb|ABU77936.1| hypothetical protein ESA_02704 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|259041401|gb|EEW42461.1| CspA family cold shock transcriptional regulator [Klebsiella
          pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|295057869|gb|ADF62607.1| cold shock protein CspE [Enterobacter cloacae subsp. cloacae ATCC
          13047]
 gi|295096620|emb|CBK85710.1| cold shock protein E (CspE) [Enterobacter cloacae subsp. cloacae
          NCTC 9394]
 gi|328535997|gb|EGF62410.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
          Length = 69

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++ + N A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVIAL 69


>gi|2493771|sp|P72188|CAPA_PSEFR RecName: Full=Cold shock protein CapA; AltName: Full=C7.0;
          AltName: Full=Cold acclimation protein A
 gi|1513079|gb|AAC45996.1| cold acclimation protein A [Pseudomonas fragi]
          Length = 64

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 3/52 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
            G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ V++
Sbjct: 5  QSGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53


>gi|224475930|ref|YP_002633536.1| putative cold-shock protein [Staphylococcus carnosus subsp.
          carnosus TM300]
 gi|222420537|emb|CAL27351.1| putative cold-shock protein [Staphylococcus carnosus subsp.
          carnosus TM300]
          Length = 67

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI      E+GDDVF+H SA+   G   L EGQ V +D V+ D 
Sbjct: 1  MNNGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQGDGYKTLEEGQSVDFDIVEGD- 55

Query: 62 NGKYSAENLKL 72
           G+ +A  +K+
Sbjct: 56 RGEQAANVVKM 66


>gi|229032808|ref|ZP_04188764.1| hypothetical protein bcere0028_48380 [Bacillus cereus AH1271]
 gi|228728481|gb|EEL79501.1| hypothetical protein bcere0028_48380 [Bacillus cereus AH1271]
          Length = 67

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N +KG+GFI      E GDDVF+H SA+   G  +L EGQ V +D V + 
Sbjct: 1  MNMQGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55

Query: 61 ANGKYSAENLKL 72
          A G  +A  +KL
Sbjct: 56 ARGPQAANVIKL 67


>gi|94676996|ref|YP_588711.1| cold shock protein CspE [Baumannia cicadellinicola str. Hc
          (Homalodisca coagulata)]
 gi|94220146|gb|ABF14305.1| cold shock-like protein CspE [Baumannia cicadellinicola str. Hc
          (Homalodisca coagulata)]
          Length = 69

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE  ++   DVF+H SA+ S G   L EGQ V ++ + N A G
Sbjct: 5  KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 60

Query: 64 KYSAENLKL 72
            +A+ + +
Sbjct: 61 PSAADVIAI 69


>gi|15923806|ref|NP_371340.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926469|ref|NP_374002.1| cold-shock protein C [Staphylococcus aureus subsp. aureus N315]
 gi|21282499|ref|NP_645587.1| cold-shock protein C [Staphylococcus aureus subsp. aureus MW2]
 gi|49483048|ref|YP_040272.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49485662|ref|YP_042883.1| putative cold shock protein [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57650136|ref|YP_185734.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus COL]
 gi|82750501|ref|YP_416242.1| cold-shock protein C [Staphylococcus aureus RF122]
 gi|87161313|ref|YP_493477.1| cold shock protein [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|88194578|ref|YP_499374.1| hypothetical protein SAOUHSC_00819 [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|148267252|ref|YP_001246195.1| cold-shock DNA-binding domain-containing protein [Staphylococcus
          aureus subsp. aureus JH9]
 gi|150393301|ref|YP_001315976.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus JH1]
 gi|151220973|ref|YP_001331795.1| cold-shock protein CSD family protein [Staphylococcus aureus
          subsp. aureus str. Newman]
 gi|156979143|ref|YP_001441402.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509065|ref|YP_001574724.1| cold-shock protein [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|221141194|ref|ZP_03565687.1| cold-shock protein [Staphylococcus aureus subsp. aureus str.
          JKD6009]
 gi|253316731|ref|ZP_04839944.1| cold shock protein [Staphylococcus aureus subsp. aureus str.
          CF-Marseille]
 gi|253731424|ref|ZP_04865589.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253732760|ref|ZP_04866925.1| cold-shock protein C [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005605|ref|ZP_05144206.2| cold shock protein [Staphylococcus aureus subsp. aureus
          Mu50-omega]
 gi|257424912|ref|ZP_05601339.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257427580|ref|ZP_05603979.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257430213|ref|ZP_05606596.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432912|ref|ZP_05609272.1| cold-shock protein C [Staphylococcus aureus subsp. aureus E1410]
 gi|257435816|ref|ZP_05611864.1| cold-shock protein C [Staphylococcus aureus subsp. aureus M876]
 gi|257794886|ref|ZP_05643865.1| cold shock protein [Staphylococcus aureus A9781]
 gi|258418202|ref|ZP_05682467.1| cold shock protein [Staphylococcus aureus A9763]
 gi|258421499|ref|ZP_05684424.1| cold-shock protein [Staphylococcus aureus A9719]
 gi|258423441|ref|ZP_05686332.1| cold shock protein [Staphylococcus aureus A9635]
 gi|258439159|ref|ZP_05690203.1| cold-shock protein C [Staphylococcus aureus A9299]
 gi|258440913|ref|ZP_05690748.1| cold-shock protein DNA-binding [Staphylococcus aureus A8115]
 gi|258445743|ref|ZP_05693920.1| cold-shock protein C [Staphylococcus aureus A6300]
 gi|258449556|ref|ZP_05697658.1| cold-shock protein CSD family protein [Staphylococcus aureus
          A6224]
 gi|258452159|ref|ZP_05700175.1| cold-shock protein CSD family protein [Staphylococcus aureus
          A5948]
 gi|258453956|ref|ZP_05701928.1| cold-shock protein C [Staphylococcus aureus A5937]
 gi|262050053|ref|ZP_06022910.1| cold-shock protein C [Staphylococcus aureus D30]
 gi|262053165|ref|ZP_06025326.1| cold-shock protein C [Staphylococcus aureus 930918-3]
 gi|269202417|ref|YP_003281686.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus ED98]
 gi|282894625|ref|ZP_06302852.1| cold shock protein cspC [Staphylococcus aureus A8117]
 gi|282903424|ref|ZP_06311315.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          C160]
 gi|282905203|ref|ZP_06313060.1| cold shock protein beta-ribbon CspA family protein
          [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908183|ref|ZP_06316014.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282910439|ref|ZP_06318243.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282913636|ref|ZP_06321425.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M899]
 gi|282916136|ref|ZP_06323899.1| cold shock protein [Staphylococcus aureus subsp. aureus D139]
 gi|282918587|ref|ZP_06326324.1| cold shock protein [Staphylococcus aureus subsp. aureus C427]
 gi|282923553|ref|ZP_06331233.1| cold shock-like protein cspC [Staphylococcus aureus subsp. aureus
          C101]
 gi|282926148|ref|ZP_06333783.1| cold shock-like protein cspC [Staphylococcus aureus A9765]
 gi|282926662|ref|ZP_06334292.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A10102]
 gi|283769955|ref|ZP_06342847.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus H19]
 gi|283957625|ref|ZP_06375078.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|284023816|ref|ZP_06378214.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus 132]
 gi|293500678|ref|ZP_06666529.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus 58-424]
 gi|293509628|ref|ZP_06668339.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus M809]
 gi|293524214|ref|ZP_06670901.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M1015]
 gi|294850139|ref|ZP_06790875.1| cold shock protein [Staphylococcus aureus A9754]
 gi|295406518|ref|ZP_06816324.1| cold shock-like protein cspC [Staphylococcus aureus A8819]
 gi|295427371|ref|ZP_06820006.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297208480|ref|ZP_06924909.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|297245243|ref|ZP_06929117.1| cold shock-like protein cspC [Staphylococcus aureus A8796]
 gi|297590271|ref|ZP_06948910.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8]
 gi|300912553|ref|ZP_07129996.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|304381582|ref|ZP_07364232.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|2226349|gb|AAB61744.1| CspC [Staphylococcus aureus RN4220]
 gi|13700683|dbj|BAB41980.1| cold-shock protein C [Staphylococcus aureus subsp. aureus N315]
 gi|14246585|dbj|BAB56978.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu50]
 gi|21203936|dbj|BAB94635.1| cold-shock protein C [Staphylococcus aureus subsp. aureus MW2]
 gi|49241177|emb|CAG39856.1| putative cold shock protein [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|49244105|emb|CAG42531.1| putative cold shock protein [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57284322|gb|AAW36416.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
          aureus COL]
 gi|82656032|emb|CAI80437.1| cold-shock protein C [Staphylococcus aureus RF122]
 gi|87127287|gb|ABD21801.1| cold shock protein [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|87202136|gb|ABD29946.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|147740321|gb|ABQ48619.1| cold-shock DNA-binding protein family [Staphylococcus aureus
          subsp. aureus JH9]
 gi|149945753|gb|ABR51689.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus JH1]
 gi|150373773|dbj|BAF67033.1| cold-shock protein CSD family protein [Staphylococcus aureus
          subsp. aureus str. Newman]
 gi|156721278|dbj|BAF77695.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367874|gb|ABX28845.1| cold-shock protein [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|253724824|gb|EES93553.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253729280|gb|EES98009.1| cold-shock protein C [Staphylococcus aureus subsp. aureus TCH130]
 gi|257272482|gb|EEV04605.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257275773|gb|EEV07246.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257278990|gb|EEV09601.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282327|gb|EEV12462.1| cold-shock protein C [Staphylococcus aureus subsp. aureus E1410]
 gi|257285007|gb|EEV15126.1| cold-shock protein C [Staphylococcus aureus subsp. aureus M876]
 gi|257788858|gb|EEV27198.1| cold shock protein [Staphylococcus aureus A9781]
 gi|257838995|gb|EEV63474.1| cold shock protein [Staphylococcus aureus A9763]
 gi|257842425|gb|EEV66849.1| cold-shock protein [Staphylococcus aureus A9719]
 gi|257846502|gb|EEV70525.1| cold shock protein [Staphylococcus aureus A9635]
 gi|257847731|gb|EEV71728.1| cold-shock protein C [Staphylococcus aureus A9299]
 gi|257852427|gb|EEV76348.1| cold-shock protein DNA-binding [Staphylococcus aureus A8115]
 gi|257855319|gb|EEV78257.1| cold-shock protein C [Staphylococcus aureus A6300]
 gi|257857064|gb|EEV79963.1| cold-shock protein CSD family protein [Staphylococcus aureus
          A6224]
 gi|257860374|gb|EEV83206.1| cold-shock protein CSD family protein [Staphylococcus aureus
          A5948]
 gi|257863821|gb|EEV86577.1| cold-shock protein C [Staphylococcus aureus A5937]
 gi|259158935|gb|EEW44018.1| cold-shock protein C [Staphylococcus aureus 930918-3]
 gi|259161849|gb|EEW46434.1| cold-shock protein C [Staphylococcus aureus D30]
 gi|262074707|gb|ACY10680.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus ED98]
 gi|269940369|emb|CBI48746.1| putative cold shock protein [Staphylococcus aureus subsp. aureus
          TW20]
 gi|282314421|gb|EFB44811.1| cold shock-like protein cspC [Staphylococcus aureus subsp. aureus
          C101]
 gi|282317721|gb|EFB48093.1| cold shock protein [Staphylococcus aureus subsp. aureus C427]
 gi|282320084|gb|EFB50431.1| cold shock protein [Staphylococcus aureus subsp. aureus D139]
 gi|282322668|gb|EFB52990.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M899]
 gi|282325831|gb|EFB56139.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282327848|gb|EFB58130.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282331610|gb|EFB61122.1| cold shock protein beta-ribbon CspA family protein
          [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282591555|gb|EFB96627.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A10102]
 gi|282592289|gb|EFB97306.1| cold shock-like protein cspC [Staphylococcus aureus A9765]
 gi|282596379|gb|EFC01340.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          C160]
 gi|282762902|gb|EFC03035.1| cold shock protein cspC [Staphylococcus aureus A8117]
 gi|283460102|gb|EFC07192.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus H19]
 gi|283470089|emb|CAQ49300.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          ST398]
 gi|283791076|gb|EFC29891.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|285816495|gb|ADC36982.1| Cold shock protein CspC [Staphylococcus aureus 04-02981]
 gi|290921177|gb|EFD98238.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M1015]
 gi|291095683|gb|EFE25944.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus 58-424]
 gi|291467725|gb|EFF10240.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus M809]
 gi|294822913|gb|EFG39346.1| cold shock protein [Staphylococcus aureus A9754]
 gi|294968663|gb|EFG44686.1| cold shock-like protein cspC [Staphylococcus aureus A8819]
 gi|295128759|gb|EFG58390.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886735|gb|EFH25639.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|297177914|gb|EFH37163.1| cold shock-like protein cspC [Staphylococcus aureus A8796]
 gi|297576570|gb|EFH95285.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8]
 gi|298694126|gb|ADI97348.1| cold-shock protein C [Staphylococcus aureus subsp. aureus ED133]
 gi|300886799|gb|EFK82001.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|302332502|gb|ADL22695.1| cold-shock DNA-binding domain protein, CspC [Staphylococcus
          aureus subsp. aureus JKD6159]
 gi|302750688|gb|ADL64865.1| cold-shock DNA-binding domain protein, CspC [Staphylococcus
          aureus subsp. aureus str. JKD6008]
 gi|304339945|gb|EFM05889.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|312438777|gb|ADQ77848.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          TCH60]
 gi|315128997|gb|EFT84994.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|315194411|gb|EFU24803.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS00]
 gi|315196274|gb|EFU26628.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140093|gb|EFW31953.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus MRSA131]
 gi|320141733|gb|EFW33562.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus MRSA177]
 gi|323438537|gb|EGA96285.1| cold-shock protein C [Staphylococcus aureus O11]
 gi|323441972|gb|EGA99609.1| cold-shock protein C [Staphylococcus aureus O46]
 gi|329313533|gb|AEB87946.1| Cold-shock DNA-binding protein family [Staphylococcus aureus
          subsp. aureus T0131]
 gi|329724582|gb|EGG61089.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 21172]
 gi|329726262|gb|EGG62732.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 21189]
 gi|329733929|gb|EGG70251.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 21193]
          Length = 66

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI      E G DVF+H SA+A  G  +L EGQ V +D V+ D 
Sbjct: 1  MNNGTVKWFNAEKGFGFI----EREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGD- 55

Query: 62 NGKYSAENLKL 72
           G+ +A  +K+
Sbjct: 56 RGEQAANVVKM 66


>gi|126650361|ref|ZP_01722589.1| cold-shock domain family protein [Bacillus sp. B14905]
 gi|126593011|gb|EAZ86993.1| cold-shock domain family protein [Bacillus sp. B14905]
          Length = 67

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ VT+D
Sbjct: 1  MEKGNVKWFNGEKGFGFIEREG----GDDVFVHFSAIQGEGYKTLKEGQAVTFD 50


>gi|91776492|ref|YP_546248.1| cold-shock DNA-binding protein family protein [Methylobacillus
          flagellatus KT]
 gi|91710479|gb|ABE50407.1| cold-shock DNA-binding protein family [Methylobacillus
          flagellatus KT]
          Length = 67

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + GDD+F H SA+  AG  +L EGQ V++D  +
Sbjct: 4  GTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVEAGYKSLKEGQRVSFDVTE 54


>gi|29376512|ref|NP_815666.1| cold shock protein CspC [Enterococcus faecalis V583]
 gi|255972368|ref|ZP_05422954.1| cold-shock protein [Enterococcus faecalis T1]
 gi|256619465|ref|ZP_05476311.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
 gi|256853505|ref|ZP_05558875.1| cold shock protein CspC [Enterococcus faecalis T8]
 gi|256959303|ref|ZP_05563474.1| cold-shock protein [Enterococcus faecalis DS5]
 gi|256964738|ref|ZP_05568909.1| cold-shock protein [Enterococcus faecalis HIP11704]
 gi|257079369|ref|ZP_05573730.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|257087195|ref|ZP_05581556.1| cold-shock protein [Enterococcus faecalis D6]
 gi|257090271|ref|ZP_05584632.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257422222|ref|ZP_05599212.1| cold shock protein [Enterococcus faecalis X98]
 gi|300860380|ref|ZP_07106467.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
 gi|29343976|gb|AAO81736.1| cold shock protein CspC [Enterococcus faecalis V583]
 gi|255963386|gb|EET95862.1| cold-shock protein [Enterococcus faecalis T1]
 gi|256598992|gb|EEU18168.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
 gi|256711964|gb|EEU27002.1| cold shock protein CspC [Enterococcus faecalis T8]
 gi|256949799|gb|EEU66431.1| cold-shock protein [Enterococcus faecalis DS5]
 gi|256955234|gb|EEU71866.1| cold-shock protein [Enterococcus faecalis HIP11704]
 gi|256987399|gb|EEU74701.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|256995225|gb|EEU82527.1| cold-shock protein [Enterococcus faecalis D6]
 gi|256999083|gb|EEU85603.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257164046|gb|EEU94006.1| cold shock protein [Enterococcus faecalis X98]
 gi|300849419|gb|EFK77169.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
 gi|323481125|gb|ADX80564.1| cold shock protein cspC [Enterococcus faecalis 62]
 gi|329568749|gb|EGG50549.1| major cold shock protein CspA [Enterococcus faecalis TX1467]
          Length = 66

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+ + G  +L EGQ VT+D
Sbjct: 1  MNNGTVKWFNSDKGFGFITG----EDGNDVFAHFSAIQADGFKSLEEGQAVTFD 50


>gi|148559223|ref|YP_001258444.1| cold-shock family protein [Brucella ovis ATCC 25840]
 gi|148370480|gb|ABQ60459.1| cold-shock family protein [Brucella ovis ATCC 25840]
          Length = 69

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+G I P+   +   DVF+H SAV  AGL +L EGQ V Y+ V +  +GK
Sbjct: 4  GTVKFFNSTKGFGSIQPD---DGSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRRSGK 60

Query: 65 YSAENLK 71
           +A NL+
Sbjct: 61 SAAANLE 67


>gi|226223965|ref|YP_002758072.1| cold shock protein [Listeria monocytogenes Clip81459]
 gi|1001878|emb|CAA62903.1| CspA protein [Listeria monocytogenes]
 gi|225876427|emb|CAS05136.1| Putative cold shock protein [Listeria monocytogenes serotype 4b
          str. CLIP 80459]
 gi|313608931|gb|EFR84686.1| conserved domain protein [Listeria monocytogenes FSL F2-208]
          Length = 68

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N +KG+GFI      E+GDDVF+H SA+   G  +L EGQ VT+D
Sbjct: 3  MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQGDGFKSLDEGQAVTFD 52


>gi|313900176|ref|ZP_07833676.1| cold shock protein CspB [Clostridium sp. HGF2]
 gi|312955228|gb|EFR36896.1| cold shock protein CspB [Clostridium sp. HGF2]
          Length = 66

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N +KGYGFIT    ++ G D+F+H S++ S G   L EGQ V +D V++D
Sbjct: 4  GKVKWFNAEKGYGFIT----SDEGKDIFVHYSSIQSDGFRTLEEGQAVNFDVVESD 55


>gi|90962451|ref|YP_536367.1| cold shock protein [Lactobacillus salivarius UCC118]
 gi|227891500|ref|ZP_04009305.1| cold shock protein [Lactobacillus salivarius ATCC 11741]
 gi|301299206|ref|ZP_07205493.1| cold shock protein CspB [Lactobacillus salivarius
          ACS-116-V-Col5a]
 gi|90821645|gb|ABE00284.1| Cold shock protein [Lactobacillus salivarius UCC118]
 gi|227866647|gb|EEJ74068.1| cold shock protein [Lactobacillus salivarius ATCC 11741]
 gi|300853166|gb|EFK80763.1| cold shock protein CspB [Lactobacillus salivarius
          ACS-116-V-Col5a]
          Length = 66

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KG+GFIT E    +GDDVF+H +A+   G   L EGQ VT+D   +D
Sbjct: 1  MEQGTVKWFNAEKGFGFITRE----NGDDVFVHFTAIQGEGYKTLEEGQHVTFDVESSD 55


>gi|288555145|ref|YP_003427080.1| cold shock protein [Bacillus pseudofirmus OF4]
 gi|288546305|gb|ADC50188.1| cold shock protein [Bacillus pseudofirmus OF4]
          Length = 65

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 5/64 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  EG    GDDVF+H SA+   G  +L EGQ V+++ ++  A G
Sbjct: 3  QGTVKWFNAEKGFGFIEVEG----GDDVFVHFSAIQGEGFKSLEEGQAVSFE-IEQGARG 57

Query: 64 KYSA 67
            +A
Sbjct: 58 PQAA 61


>gi|227519332|ref|ZP_03949381.1| cold shock protein CspC [Enterococcus faecalis TX0104]
 gi|227555460|ref|ZP_03985507.1| cold shock protein CspC [Enterococcus faecalis HH22]
 gi|229545427|ref|ZP_04434152.1| cold shock protein CspC [Enterococcus faecalis TX1322]
 gi|229549671|ref|ZP_04438396.1| cold shock protein CspC [Enterococcus faecalis ATCC 29200]
 gi|307268123|ref|ZP_07549510.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|307272817|ref|ZP_07554064.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|307275929|ref|ZP_07557062.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|307295893|ref|ZP_07575725.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|312902769|ref|ZP_07761973.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|312951269|ref|ZP_07770171.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|227073226|gb|EEI11189.1| cold shock protein CspC [Enterococcus faecalis TX0104]
 gi|227175400|gb|EEI56372.1| cold shock protein CspC [Enterococcus faecalis HH22]
 gi|229305151|gb|EEN71147.1| cold shock protein CspC [Enterococcus faecalis ATCC 29200]
 gi|229309463|gb|EEN75450.1| cold shock protein CspC [Enterococcus faecalis TX1322]
 gi|306496224|gb|EFM65803.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|306507259|gb|EFM76396.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|306510431|gb|EFM79454.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|306515513|gb|EFM84041.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|310630803|gb|EFQ14086.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|310633823|gb|EFQ17106.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|315025996|gb|EFT37928.1| major cold shock protein CspA [Enterococcus faecalis TX2137]
 gi|315028917|gb|EFT40849.1| major cold shock protein CspA [Enterococcus faecalis TX4000]
 gi|315033307|gb|EFT45239.1| major cold shock protein CspA [Enterococcus faecalis TX0017]
 gi|315034545|gb|EFT46477.1| major cold shock protein CspA [Enterococcus faecalis TX0027]
 gi|315143420|gb|EFT87436.1| major cold shock protein CspA [Enterococcus faecalis TX2141]
 gi|315147653|gb|EFT91669.1| major cold shock protein CspA [Enterococcus faecalis TX4244]
 gi|315157261|gb|EFU01278.1| major cold shock protein CspA [Enterococcus faecalis TX0043]
 gi|315159904|gb|EFU03921.1| major cold shock protein CspA [Enterococcus faecalis TX0312]
 gi|315161387|gb|EFU05404.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
 gi|315167485|gb|EFU11502.1| major cold shock protein CspA [Enterococcus faecalis TX1341]
 gi|315574539|gb|EFU86730.1| major cold shock protein CspA [Enterococcus faecalis TX0309B]
 gi|315576700|gb|EFU88891.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
 gi|315581819|gb|EFU94010.1| major cold shock protein CspA [Enterococcus faecalis TX0309A]
          Length = 73

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+ + G  +L EGQ VT+D
Sbjct: 8  MNNGTVKWFNSDKGFGFITG----EDGNDVFAHFSAIQADGFKSLEEGQAVTFD 57


>gi|34498661|ref|NP_902876.1| cold shock transcription regulator protein [Chromobacterium
          violaceum ATCC 12472]
 gi|34104514|gb|AAQ60872.1| cold shock transcription regulator protein [Chromobacterium
          violaceum ATCC 12472]
          Length = 110

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   E GDDVF H S + + G  +L E Q V++D V+
Sbjct: 47 GTVKWFNDSKGFGFITPD---EGGDDVFAHFSQINAKGFRSLAENQRVSFDIVE 97


>gi|29827367|ref|NP_822001.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29604466|dbj|BAC68536.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 67

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  EG    G DVF+H SA+ SAG   L EGQ V +D  Q
Sbjct: 4  GTVKWFNAEKGFGFIEQEGG---GPDVFVHYSAINSAGFRELQEGQKVNFDVTQ 54


>gi|330810595|ref|YP_004355057.1| transcription factor, Csd family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327378703|gb|AEA70053.1| putative Transcription factor, Csd family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 70

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ V++
Sbjct: 7  GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53


>gi|212639316|ref|YP_002315836.1| cold shock protein, CspA family [Anoxybacillus flavithermus WK1]
 gi|212560796|gb|ACJ33851.1| Cold shock protein, CspA family [Anoxybacillus flavithermus WK1]
          Length = 66

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI  EG    GDDVF+H +A+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQNGKVKWFNNEKGYGFIEVEG----GDDVFVHFTAIQGEGYKTLEEGQAVSFEIVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|228924740|ref|ZP_04087911.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228834917|gb|EEM80385.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 64

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ VT+D
Sbjct: 1  MEKGNVKWFNGEKGFGFIEREG----GDDVFVHFSAIQGEGYKTLEEGQAVTFD 50


>gi|26987835|ref|NP_743260.1| cold-shock domain-contain protein [Pseudomonas putida KT2440]
 gi|104780430|ref|YP_606928.1| cold shock protein CapB [Pseudomonas entomophila L48]
 gi|148546382|ref|YP_001266484.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida F1]
 gi|325275204|ref|ZP_08141171.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
 gi|24982535|gb|AAN66724.1|AE016300_9 cold-shock domain family protein [Pseudomonas putida KT2440]
 gi|95109417|emb|CAK14117.1| cold shock protein CapB [Pseudomonas entomophila L48]
 gi|148510440|gb|ABQ77300.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
 gi|313497465|gb|ADR58831.1| CapB [Pseudomonas putida BIRD-1]
 gi|324099691|gb|EGB97570.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
          Length = 69

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N +KGYGFITP    +SGDD+F+H  A+ + G   L EGQ VT+
Sbjct: 7  GVVKWFNDEKGYGFITP----QSGDDLFVHFKAIQADGFKTLKEGQAVTF 52


>gi|290963042|ref|YP_003494224.1| cold shock protein [Streptomyces scabiei 87.22]
 gi|260652568|emb|CBG75701.1| putative cold shock protein [Streptomyces scabiei 87.22]
          Length = 96

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H SA+ S+G   L EGQ VT+D  Q     +
Sbjct: 33 GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSAINSSGFRELQEGQAVTFDVTQGQKGPQ 89

Query: 65 YSAENL 70
            AEN+
Sbjct: 90 --AENI 93


>gi|238060935|ref|ZP_04605644.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|237882746|gb|EEP71574.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
          Length = 67

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFITP+G    G DVF H SA+ S+G  +L E Q V ++  Q     +
Sbjct: 4  GTVKWFNADKGFGFITPDG---GGADVFAHFSAIQSSGYRSLDENQRVEFEITQGQKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENIR 65


>gi|89256660|ref|YP_514022.1| cold shock protein [Francisella tularensis subsp. holarctica LVS]
 gi|156502808|ref|YP_001428873.1| cold-shock DNA-binding domain-containing protein [Francisella
          tularensis subsp. holarctica FTNF002-00]
 gi|167010528|ref|ZP_02275459.1| hypothetical protein Ftulh_07407 [Francisella tularensis subsp.
          holarctica FSC200]
 gi|254367972|ref|ZP_04983992.1| cold shock protein [Francisella tularensis subsp. holarctica 257]
 gi|290953400|ref|ZP_06558021.1| cold shock protein [Francisella tularensis subsp. holarctica
          URFT1]
 gi|295313361|ref|ZP_06803970.1| cold shock protein [Francisella tularensis subsp. holarctica
          URFT1]
 gi|89144491|emb|CAJ79800.1| cold shock protein [Francisella tularensis subsp. holarctica LVS]
 gi|134253782|gb|EBA52876.1| cold shock protein [Francisella tularensis subsp. holarctica 257]
 gi|156253411|gb|ABU61917.1| cold-shock DNA-binding domain protein [Francisella tularensis
          subsp. holarctica FTNF002-00]
          Length = 67

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFI P+   + G DVF+H SAV +AGL +L E + V+++  +N  
Sbjct: 1  MRQGTVKFFNTSKGFGFIEPQ---DGGKDVFVHISAVENAGLSSLRESEKVSFEVEEN-- 55

Query: 62 NGKYSAENLKLV 73
           GK +A N+K +
Sbjct: 56 RGKMAAVNIKSI 67


>gi|148360957|ref|YP_001252164.1| cold shock protein CspD [Legionella pneumophila str. Corby]
 gi|148282730|gb|ABQ56818.1| cold shock protein CspD [Legionella pneumophila str. Corby]
          Length = 77

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +KW+N  KG+GFI PEG    G+D+F+H S++   G   L  GQ VTYD V  +
Sbjct: 3  RGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLAPGQAVTYDVVNGE 56


>gi|52840671|ref|YP_094470.1| cold shock protein CspD [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|54296462|ref|YP_122831.1| hypothetical protein lpp0493 [Legionella pneumophila str. Paris]
 gi|296105977|ref|YP_003617677.1| cold shock protein CspD [Legionella pneumophila 2300/99 Alcoy]
 gi|52627782|gb|AAU26523.1| cold shock protein CspD [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|53750247|emb|CAH11641.1| hypothetical protein lpp0493 [Legionella pneumophila str. Paris]
 gi|295647878|gb|ADG23725.1| cold shock protein CspD [Legionella pneumophila 2300/99 Alcoy]
 gi|307609235|emb|CBW98700.1| hypothetical protein LPW_05081 [Legionella pneumophila 130b]
          Length = 77

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +KW+N  KG+GFI PEG    G+D+F+H S++   G   L  GQ VTYD V  +
Sbjct: 3  RGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLVPGQAVTYDVVNGE 56


>gi|312829285|emb|CBX34127.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus
          ECT-R 2]
          Length = 66

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI      E G DVF+H SA+A  G  +L EGQ V +D V+ D 
Sbjct: 1  MNNGTVKWFNAEKGFGFI----EREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGD- 55

Query: 62 NGKYSAENLKL 72
           G+ +A  +K+
Sbjct: 56 RGEQAANVVKI 66


>gi|86358607|ref|YP_470499.1| cold shock protein [Rhizobium etli CFN 42]
 gi|116253191|ref|YP_769029.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|190892746|ref|YP_001979288.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|209550323|ref|YP_002282240.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|218663420|ref|ZP_03519350.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771]
 gi|241205705|ref|YP_002976801.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|86282709|gb|ABC91772.1| cold shock protein [Rhizobium etli CFN 42]
 gi|115257839|emb|CAK08937.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|190698025|gb|ACE92110.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|209536079|gb|ACI56014.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|240859595|gb|ACS57262.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|327188379|gb|EGE55596.1| cold shock protein [Rhizobium etli CNPAF512]
          Length = 71

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI P+     G D+F+H SAV ++GL  LTE Q V++D  + D
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPD---RGGADIFVHISAVQASGLAGLTENQKVSFD-TEPD 56

Query: 61 ANGK-YSAENLKL 72
            GK   A NL++
Sbjct: 57 RRGKGPKAVNLQI 69


>gi|295114004|emb|CBL32641.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76]
          Length = 66

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N DKG+GFIT E     G+D+F H SA+ S G   L EGQ VT+D
Sbjct: 1  MNNGTVKWFNADKGFGFITGE----DGNDIFAHFSAIQSDGFKTLDEGQAVTFD 50


>gi|188025725|ref|ZP_02959593.2| hypothetical protein PROSTU_01464 [Providencia stuartii ATCC
          25827]
 gi|188020258|gb|EDU58298.1| hypothetical protein PROSTU_01464 [Providencia stuartii ATCC
          25827]
          Length = 81

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++  +
Sbjct: 17 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIASEGFKTLAEGQKVEFEITE 68


>gi|312144105|ref|YP_003995551.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
 gi|311904756|gb|ADQ15197.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
          Length = 67

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          MV+ G +KW++  KGYGFI      E GDDVF+H SA+   G   L+E Q V ++ V+ D
Sbjct: 1  MVYTGKVKWFDEKKGYGFI----EREDGDDVFVHFSAIEQEGFKTLSEDQEVEFEIVEGD 56

Query: 61 ANGKYSAENLKLV 73
             +  AEN+ ++
Sbjct: 57 RGPQ--AENVVVI 67


>gi|91975763|ref|YP_568422.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          BisB5]
 gi|91682219|gb|ABE38521.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB5]
          Length = 70

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +LTEGQ ++++ V+ D
Sbjct: 1  MSMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFE-VEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KKGK 60


>gi|226943301|ref|YP_002798374.1| Cold shock domain family protein [Azotobacter vinelandii DJ]
 gi|226718228|gb|ACO77399.1| Cold shock domain family protein [Azotobacter vinelandii DJ]
          Length = 70

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ V+++ VQ
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIEGTGFKSLKEGQKVSFEAVQ 56


>gi|16800469|ref|NP_470737.1| hypothetical protein lin1401 [Listeria innocua Clip11262]
 gi|16803404|ref|NP_464889.1| hypothetical protein lmo1364 [Listeria monocytogenes EGD-e]
 gi|46907590|ref|YP_013979.1| cold-shock domain-contain protein [Listeria monocytogenes
          serotype 4b str. F2365]
 gi|47093751|ref|ZP_00231501.1| cold-shock domain family protein [Listeria monocytogenes str. 4b
          H7858]
 gi|47095947|ref|ZP_00233550.1| cold-shock domain family protein [Listeria monocytogenes str.
          1/2a F6854]
 gi|116872795|ref|YP_849576.1| cold shock protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|217964490|ref|YP_002350168.1| hypothetical protein LMHCC_1207 [Listeria monocytogenes HCC23]
 gi|224499943|ref|ZP_03668292.1| hypothetical protein LmonF1_09789 [Listeria monocytogenes Finland
          1988]
 gi|224501693|ref|ZP_03670000.1| hypothetical protein LmonFR_04122 [Listeria monocytogenes FSL
          R2-561]
 gi|254824577|ref|ZP_05229578.1| cold-shock domain-containing protein [Listeria monocytogenes FSL
          J1-194]
 gi|254827625|ref|ZP_05232312.1| cspL [Listeria monocytogenes FSL N3-165]
 gi|254829879|ref|ZP_05234534.1| cold shock protein [Listeria monocytogenes 10403S]
 gi|254852588|ref|ZP_05241936.1| cspL [Listeria monocytogenes FSL R2-503]
 gi|254898471|ref|ZP_05258395.1| cold shock protein [Listeria monocytogenes J0161]
 gi|254912038|ref|ZP_05262050.1| CspA protein [Listeria monocytogenes J2818]
 gi|254932321|ref|ZP_05265680.1| cspL [Listeria monocytogenes HPB2262]
 gi|254936365|ref|ZP_05268062.1| cspL [Listeria monocytogenes F6900]
 gi|255027593|ref|ZP_05299579.1| cold shock protein [Listeria monocytogenes FSL J2-003]
 gi|255521546|ref|ZP_05388783.1| cold shock protein [Listeria monocytogenes FSL J1-175]
 gi|284801749|ref|YP_003413614.1| hypothetical protein LM5578_1503 [Listeria monocytogenes 08-5578]
 gi|284994891|ref|YP_003416659.1| hypothetical protein LM5923_1456 [Listeria monocytogenes 08-5923]
 gi|290893527|ref|ZP_06556510.1| cold shock-like protein cspLA [Listeria monocytogenes FSL J2-071]
 gi|300765396|ref|ZP_07075378.1| cold-shock domain family protein [Listeria monocytogenes FSL
          N1-017]
 gi|315303031|ref|ZP_07873741.1| conserved domain protein [Listeria ivanovii FSL F6-596]
 gi|61221523|sp|P0A355|CSPA_LISMO RecName: Full=Cold shock-like protein CspLA; Short=CspL
 gi|61221525|sp|P0A356|CSPA_LISIN RecName: Full=Cold shock-like protein CspLA; Short=CspL
 gi|12054787|emb|CAC20630.1| cold shock protein L [Listeria monocytogenes]
 gi|16410780|emb|CAC99442.1| cspL [Listeria monocytogenes EGD-e]
 gi|16413874|emb|CAC96632.1| cspL [Listeria innocua Clip11262]
 gi|46880858|gb|AAT04156.1| cold-shock domain family protein [Listeria monocytogenes serotype
          4b str. F2365]
 gi|47015693|gb|EAL06623.1| cold-shock domain family protein [Listeria monocytogenes str.
          1/2a F6854]
 gi|47017872|gb|EAL08655.1| cold-shock domain family protein [Listeria monocytogenes str. 4b
          H7858]
 gi|116741673|emb|CAK20797.1| cold shock protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|217333760|gb|ACK39554.1| conserved domain protein [Listeria monocytogenes HCC23]
 gi|258600003|gb|EEW13328.1| cspL [Listeria monocytogenes FSL N3-165]
 gi|258605901|gb|EEW18509.1| cspL [Listeria monocytogenes FSL R2-503]
 gi|258608956|gb|EEW21564.1| cspL [Listeria monocytogenes F6900]
 gi|284057311|gb|ADB68252.1| hypothetical protein LM5578_1503 [Listeria monocytogenes 08-5578]
 gi|284060358|gb|ADB71297.1| hypothetical protein LM5923_1456 [Listeria monocytogenes 08-5923]
 gi|290556872|gb|EFD90403.1| cold shock-like protein cspLA [Listeria monocytogenes FSL J2-071]
 gi|293583877|gb|EFF95909.1| cspL [Listeria monocytogenes HPB2262]
 gi|293590004|gb|EFF98338.1| CspA protein [Listeria monocytogenes J2818]
 gi|293593815|gb|EFG01576.1| cold-shock domain-containing protein [Listeria monocytogenes FSL
          J1-194]
 gi|300513833|gb|EFK40898.1| cold-shock domain family protein [Listeria monocytogenes FSL
          N1-017]
 gi|307570946|emb|CAR84125.1| cold-shock family protein [Listeria monocytogenes L99]
 gi|313619068|gb|EFR90876.1| conserved domain protein [Listeria innocua FSL S4-378]
 gi|313623888|gb|EFR94003.1| conserved domain protein [Listeria innocua FSL J1-023]
 gi|313628598|gb|EFR97021.1| conserved domain protein [Listeria ivanovii FSL F6-596]
 gi|328467502|gb|EGF38571.1| cold shock protein [Listeria monocytogenes 1816]
 gi|328475078|gb|EGF45866.1| cold shock protein [Listeria monocytogenes 220]
 gi|332311805|gb|EGJ24900.1| Cold shock-like protein CspLA [Listeria monocytogenes str. Scott
          A]
          Length = 66

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N +KG+GFI      E+GDDVF+H SA+   G  +L EGQ VT+D
Sbjct: 1  MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQGDGFKSLDEGQAVTFD 50


>gi|167034479|ref|YP_001669710.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida GB-1]
 gi|166860967|gb|ABY99374.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
          Length = 70

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ V++
Sbjct: 7  GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53


>gi|296332857|ref|ZP_06875317.1| cold-shock protein [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305673203|ref|YP_003864875.1| cold-shock protein [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150137|gb|EFG91026.1| cold-shock protein [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305411447|gb|ADM36566.1| cold-shock protein [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 67

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI      ++GDDVF+H SA+   G  +L EGQ VT+D V+  A
Sbjct: 1  MEQGTVKWFNAEKGFGFI----ERDNGDDVFVHFSAIQGDGFKSLDEGQKVTFD-VEQGA 55

Query: 62 NGKYSA 67
           G  +A
Sbjct: 56 RGAQAA 61


>gi|293400346|ref|ZP_06644492.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291306746|gb|EFE47989.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 67

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +KW+N +KGYGFI    S+E G DVF+H S +   G  +L EGQ VT++ V++D
Sbjct: 2  KGKVKWFNAEKGYGFI----SSEDGKDVFVHYSQILQDGYKSLEEGQTVTFEAVESD 54


>gi|229141918|ref|ZP_04270444.1| hypothetical protein bcere0013_50050 [Bacillus cereus BDRD-ST26]
 gi|229199306|ref|ZP_04325973.1| hypothetical protein bcere0001_48080 [Bacillus cereus m1293]
 gi|228584166|gb|EEK42317.1| hypothetical protein bcere0001_48080 [Bacillus cereus m1293]
 gi|228641533|gb|EEK97838.1| hypothetical protein bcere0013_50050 [Bacillus cereus BDRD-ST26]
          Length = 65

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E GDDVF+H SA+   G  +L EGQ V +D V+  A G
Sbjct: 2  QGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|91784982|ref|YP_560188.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|187925141|ref|YP_001896783.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|209517460|ref|ZP_03266301.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295677450|ref|YP_003605974.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|296157173|ref|ZP_06840009.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|307730770|ref|YP_003907994.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1003]
 gi|323527133|ref|YP_004229286.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1001]
 gi|91688936|gb|ABE32136.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
 gi|187716335|gb|ACD17559.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|209502114|gb|EEA02129.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295437293|gb|ADG16463.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|295892509|gb|EFG72291.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|307585305|gb|ADN58703.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
 gi|323384135|gb|ADX56226.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 68

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ VT++ VQ
Sbjct: 4  GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVTFEVVQ 54


>gi|227509828|ref|ZP_03939877.1| CspA family cold shock transcriptional regulator [Lactobacillus
          brevis subsp. gravesensis ATCC 27305]
 gi|227512764|ref|ZP_03942813.1| CspA family cold shock transcriptional regulator [Lactobacillus
          buchneri ATCC 11577]
 gi|227522888|ref|ZP_03952937.1| CspA family cold shock transcriptional regulator [Lactobacillus
          hilgardii ATCC 8290]
 gi|227083964|gb|EEI19276.1| CspA family cold shock transcriptional regulator [Lactobacillus
          buchneri ATCC 11577]
 gi|227089917|gb|EEI25229.1| CspA family cold shock transcriptional regulator [Lactobacillus
          hilgardii ATCC 8290]
 gi|227190752|gb|EEI70819.1| CspA family cold shock transcriptional regulator [Lactobacillus
          brevis subsp. gravesensis ATCC 27305]
          Length = 66

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKGYGFIT     E+G DVF+H SA+ + G   L EGQ VT D  + D
Sbjct: 1  MEQGTVKWFNGDKGYGFIT----LENGSDVFVHFSAINADGFKTLEEGQKVTLDVEKGD 55


>gi|298292419|ref|YP_003694358.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296928930|gb|ADH89739.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 71

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N +KGYGFI P+   + G DVF+H SAV  +GL  L EGQ V+++ V+ D
Sbjct: 1  MATMGTVKFFNTEKGYGFIRPD---DGGRDVFVHVSAVTRSGLGTLAEGQRVSFE-VEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KRGK 60


>gi|311032516|ref|ZP_07710606.1| major cold shock protein [Bacillus sp. m3-13]
          Length = 66

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI      + GDDVF+H SA+   G  +L EGQ VT++ VQ
Sbjct: 3  QGTVKWFNAEKGFGFI----ERQDGDDVFVHFSAIQGEGFKSLEEGQSVTFEIVQ 53


>gi|309775820|ref|ZP_07670814.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916358|gb|EFP62104.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 66

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N +KGYGFIT    ++ G D+F+H S++ S G   L EGQ V +D V++D
Sbjct: 4  GKVKWFNAEKGYGFIT----SDDGKDIFVHYSSIQSDGFRTLEEGQAVNFDVVESD 55


>gi|213968381|ref|ZP_03396525.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          T1]
 gi|301384647|ref|ZP_07233065.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          Max13]
 gi|302058900|ref|ZP_07250441.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          K40]
 gi|302133013|ref|ZP_07259003.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          NCPPB 1108]
 gi|213927019|gb|EEB60570.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          T1]
          Length = 70

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP    ESG D+F+H  A+  +G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGSGFKSLKEGQKVTFIAVQ 56


>gi|194337522|ref|YP_002019316.1| cold-shock DNA-binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194309999|gb|ACF44699.1| cold-shock DNA-binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 74

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KG+GFI P+     G DVF+H + +  +GL  L E   V YD V+  
Sbjct: 6  MADTGTVKWFNKMKGFGFIIPD---NGGADVFVHINELEKSGLATLNEADKVKYDMVEK- 61

Query: 61 ANGKYSAENLKLV 73
           NGK +A N++L+
Sbjct: 62 -NGKVAAGNIQLL 73


>gi|167032005|ref|YP_001667236.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida GB-1]
 gi|166858493|gb|ABY96900.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
          Length = 70

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KGYGFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDEKGYGFITP----ESGADLFVHFRAIEGNGFKSLKEGQKVTFVAVQ 56


>gi|226312661|ref|YP_002772555.1| cold shock protein [Brevibacillus brevis NBRC 100599]
 gi|226095609|dbj|BAH44051.1| cold shock protein [Brevibacillus brevis NBRC 100599]
          Length = 67

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ V ++ VQ  
Sbjct: 1  MQTNGTVKWFNAEKGFGFIQVEG----GDDVFVHFSAIQGDGFKTLDEGQKVQFNIVQ-- 54

Query: 61 ANGKYSAENL 70
           N    AEN+
Sbjct: 55 GNRGPQAENV 64


>gi|295107075|emb|CBL04618.1| cold-shock DNA-binding protein family [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 67

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+NP+KGYGFI    S   G+D+F+H S +   G   L EGQ V +D V    NG
Sbjct: 3  EGTVKWFNPEKGYGFI----SQNDGEDLFVHFSEIKMDGFKTLDEGQAVQFD-VTTGQNG 57

Query: 64 KYSAENL 70
          K  A N+
Sbjct: 58 KLQASNV 64


>gi|257874927|ref|ZP_05654580.1| cold-shock protein [Enterococcus casseliflavus EC20]
 gi|257809093|gb|EEV37913.1| cold-shock protein [Enterococcus casseliflavus EC20]
          Length = 66

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+   G   L EGQ VT+D
Sbjct: 1  MNNGTVKWFNADKGFGFITG----EDGNDVFAHFSAIQGEGFKTLEEGQAVTFD 50


>gi|288554127|ref|YP_003426062.1| cold shock protein CspC [Bacillus pseudofirmus OF4]
 gi|288545287|gb|ADC49170.1| cold shock protein CspC [Bacillus pseudofirmus OF4]
          Length = 65

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E GDDVF+H SA+ S G  +L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFNAEKGFGFI----EREDGDDVFVHFSAINSEGFKSLDEGQDVEFEIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|229544252|ref|ZP_04433311.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
 gi|229325391|gb|EEN91067.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
          Length = 67

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI  EG    GDDVF+H SA+   G   L EGQ V++D V+  +
Sbjct: 1  MEHGTVKWFNSEKGYGFIEREG----GDDVFVHFSAIQGEGYKTLEEGQKVSFD-VEEGS 55

Query: 62 NGKYSA 67
           G  +A
Sbjct: 56 RGPQAA 61


>gi|170740501|ref|YP_001769156.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168194775|gb|ACA16722.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
          Length = 242

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KWY+P KG+GF++ +   + G DVF+HRSA+A AGL +L EGQ VT   V+
Sbjct: 178 GTVKWYDPAKGFGFVSVK---DGGKDVFVHRSALARAGLDSLAEGQQVTMGVVE 228



 Score = 37.7 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
            ++KW+N +KG+GF+      E GD   D FLH  AV +AG  +L  G  +T    Q
Sbjct: 64  ATVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHADLLPGTRLTVQTAQ 114


>gi|20808157|ref|NP_623328.1| cold shock proteins [Thermoanaerobacter tengcongensis MB4]
 gi|20516747|gb|AAM24932.1| Cold shock proteins [Thermoanaerobacter tengcongensis MB4]
          Length = 66

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N +KGYGFI      E G DVF+H SA+   G   L EGQ V ++ VQ  A G
Sbjct: 3  RGKVKWFNAEKGYGFI----EREDGTDVFVHYSAIEGEGFKTLEEGQAVEFEVVQA-AKG 57

Query: 64 KYSAENLKL 72
            +++  KL
Sbjct: 58 PQASKVRKL 66


>gi|83858279|ref|ZP_00951801.1| cold-shock domain family protein [Oceanicaulis alexandrii
          HTCC2633]
 gi|83853102|gb|EAP90954.1| cold-shock domain family protein [Oceanicaulis alexandrii
          HTCC2633]
          Length = 70

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KGYGFI P+  ++   DVF+H SAV  AG+  L EGQ ++++   +  +GK
Sbjct: 4  GIVKWFNSTKGYGFIQPDDGSK---DVFVHASAVERAGMPELKEGQRISFEEEVDKRSGK 60

Query: 65 YSAENL 70
           SA +L
Sbjct: 61 TSAGSL 66


>gi|30023224|ref|NP_834855.1| cold shock protein [Bacillus cereus ATCC 14579]
 gi|47567403|ref|ZP_00238116.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|47568473|ref|ZP_00239173.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|47569297|ref|ZP_00239982.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|49188026|ref|YP_031279.1| cold shock protein CspC [Bacillus anthracis str. Sterne]
 gi|49481145|ref|YP_039179.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|52140373|ref|YP_086455.1| cold shock protein [Bacillus cereus E33L]
 gi|65317162|ref|ZP_00390121.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012]
 gi|75759030|ref|ZP_00739138.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|118480228|ref|YP_897379.1| cold-shock DNA-binding protein family protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|163942875|ref|YP_001647759.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|165869975|ref|ZP_02214632.1| cold shock protein CspC [Bacillus anthracis str. A0488]
 gi|167635267|ref|ZP_02393582.1| cold shock protein CspC [Bacillus anthracis str. A0442]
 gi|167640473|ref|ZP_02398736.1| cold shock protein CspC [Bacillus anthracis str. A0193]
 gi|170687914|ref|ZP_02879127.1| cold shock protein CspC [Bacillus anthracis str. A0465]
 gi|170707764|ref|ZP_02898215.1| cold shock protein CspC [Bacillus anthracis str. A0389]
 gi|177653014|ref|ZP_02935341.1| cold shock protein CspC [Bacillus anthracis str. A0174]
 gi|190567802|ref|ZP_03020714.1| cold shock protein CspC [Bacillus anthracis Tsiankovskii-I]
 gi|196032913|ref|ZP_03100326.1| cold shock protein CspC [Bacillus cereus W]
 gi|196045641|ref|ZP_03112871.1| cold shock protein CspC [Bacillus cereus 03BB108]
 gi|206970208|ref|ZP_03231161.1| cold shock protein CspC [Bacillus cereus AH1134]
 gi|218906366|ref|YP_002454200.1| cold shock protein CspC [Bacillus cereus AH820]
 gi|225867154|ref|YP_002752532.1| cold shock protein CspC [Bacillus cereus 03BB102]
 gi|228903664|ref|ZP_04067784.1| hypothetical protein bthur0014_48220 [Bacillus thuringiensis IBL
          4222]
 gi|228930192|ref|ZP_04093201.1| hypothetical protein bthur0010_48740 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228936477|ref|ZP_04099275.1| hypothetical protein bthur0009_49140 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228942325|ref|ZP_04104864.1| hypothetical protein bthur0008_49550 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228948909|ref|ZP_04111182.1| hypothetical protein bthur0007_50310 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228961427|ref|ZP_04123040.1| hypothetical protein bthur0005_48710 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228975255|ref|ZP_04135813.1| hypothetical protein bthur0003_50020 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228981893|ref|ZP_04142188.1| hypothetical protein bthur0002_50520 [Bacillus thuringiensis
          Bt407]
 gi|228988414|ref|ZP_04148505.1| hypothetical protein bthur0001_50690 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|229014358|ref|ZP_04171477.1| hypothetical protein bmyco0001_47610 [Bacillus mycoides DSM 2048]
 gi|229082403|ref|ZP_04214866.1| hypothetical protein bcere0023_50200 [Bacillus cereus Rock4-2]
 gi|229094285|ref|ZP_04225361.1| hypothetical protein bcere0021_49920 [Bacillus cereus Rock3-42]
 gi|229124697|ref|ZP_04253878.1| hypothetical protein bcere0016_49780 [Bacillus cereus 95/8201]
 gi|229130436|ref|ZP_04259393.1| hypothetical protein bcere0015_48700 [Bacillus cereus BDRD-Cer4]
 gi|229147720|ref|ZP_04276063.1| hypothetical protein bcere0012_48450 [Bacillus cereus BDRD-ST24]
 gi|229153345|ref|ZP_04281523.1| hypothetical protein bcere0011_48750 [Bacillus cereus m1550]
 gi|229175861|ref|ZP_04303359.1| hypothetical protein bcere0006_49320 [Bacillus cereus MM3]
 gi|229187401|ref|ZP_04314544.1| hypothetical protein bcere0004_49360 [Bacillus cereus BGSC 6E1]
 gi|229193438|ref|ZP_04320385.1| hypothetical protein bcere0002_50820 [Bacillus cereus ATCC 10876]
 gi|229602080|ref|YP_002869410.1| cold shock protein CspC [Bacillus anthracis str. A0248]
 gi|254686386|ref|ZP_05150245.1| cold shock protein CspC [Bacillus anthracis str. CNEVA-9066]
 gi|254744321|ref|ZP_05202001.1| cold shock protein CspC [Bacillus anthracis str. Kruger B]
 gi|254755619|ref|ZP_05207652.1| cold shock protein CspC [Bacillus anthracis str. Vollum]
 gi|254757074|ref|ZP_05209102.1| cold shock protein CspC [Bacillus anthracis str. Australia 94]
 gi|296505610|ref|YP_003667310.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|29898784|gb|AAP12056.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gi|47554068|gb|EAL12434.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|47554864|gb|EAL13215.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|47556024|gb|EAL14362.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|49181953|gb|AAT57329.1| cold shock protein CspC [Bacillus anthracis str. Sterne]
 gi|49332701|gb|AAT63347.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|51973842|gb|AAU15392.1| cold shock protein [Bacillus cereus E33L]
 gi|74493496|gb|EAO56604.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|118419453|gb|ABK87872.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
          str. Al Hakam]
 gi|163865072|gb|ABY46131.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
 gi|164714298|gb|EDR19818.1| cold shock protein CspC [Bacillus anthracis str. A0488]
 gi|167511516|gb|EDR86899.1| cold shock protein CspC [Bacillus anthracis str. A0193]
 gi|167529310|gb|EDR92062.1| cold shock protein CspC [Bacillus anthracis str. A0442]
 gi|170127321|gb|EDS96197.1| cold shock protein CspC [Bacillus anthracis str. A0389]
 gi|170668023|gb|EDT18773.1| cold shock protein CspC [Bacillus anthracis str. A0465]
 gi|172081789|gb|EDT66859.1| cold shock protein CspC [Bacillus anthracis str. A0174]
 gi|190561218|gb|EDV15191.1| cold shock protein CspC [Bacillus anthracis Tsiankovskii-I]
 gi|195994342|gb|EDX58297.1| cold shock protein CspC [Bacillus cereus W]
 gi|196023472|gb|EDX62149.1| cold shock protein CspC [Bacillus cereus 03BB108]
 gi|206734785|gb|EDZ51954.1| cold shock protein CspC [Bacillus cereus AH1134]
 gi|218536289|gb|ACK88687.1| cold shock protein CspC [Bacillus cereus AH820]
 gi|225789362|gb|ACO29579.1| cold shock protein CspC [Bacillus cereus 03BB102]
 gi|228589970|gb|EEK47842.1| hypothetical protein bcere0002_50820 [Bacillus cereus ATCC 10876]
 gi|228596105|gb|EEK53782.1| hypothetical protein bcere0004_49360 [Bacillus cereus BGSC 6E1]
 gi|228607594|gb|EEK64918.1| hypothetical protein bcere0006_49320 [Bacillus cereus MM3]
 gi|228629949|gb|EEK86600.1| hypothetical protein bcere0011_48750 [Bacillus cereus m1550]
 gi|228635733|gb|EEK92220.1| hypothetical protein bcere0012_48450 [Bacillus cereus BDRD-ST24]
 gi|228653031|gb|EEL08912.1| hypothetical protein bcere0015_48700 [Bacillus cereus BDRD-Cer4]
 gi|228658792|gb|EEL14451.1| hypothetical protein bcere0016_49780 [Bacillus cereus 95/8201]
 gi|228689138|gb|EEL42961.1| hypothetical protein bcere0021_49920 [Bacillus cereus Rock3-42]
 gi|228700835|gb|EEL53358.1| hypothetical protein bcere0023_50200 [Bacillus cereus Rock4-2]
 gi|228746958|gb|EEL96842.1| hypothetical protein bmyco0001_47610 [Bacillus mycoides DSM 2048]
 gi|228771270|gb|EEM19745.1| hypothetical protein bthur0001_50690 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|228778005|gb|EEM26277.1| hypothetical protein bthur0002_50520 [Bacillus thuringiensis
          Bt407]
 gi|228784534|gb|EEM32555.1| hypothetical protein bthur0003_50020 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228798241|gb|EEM45241.1| hypothetical protein bthur0005_48710 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228810665|gb|EEM57013.1| hypothetical protein bthur0007_50310 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228817369|gb|EEM63455.1| hypothetical protein bthur0008_49550 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228823309|gb|EEM69143.1| hypothetical protein bthur0009_49140 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228829477|gb|EEM75105.1| hypothetical protein bthur0010_48740 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228855932|gb|EEN00472.1| hypothetical protein bthur0014_48220 [Bacillus thuringiensis IBL
          4222]
 gi|229266488|gb|ACQ48125.1| cold shock protein CspC [Bacillus anthracis str. A0248]
 gi|296326662|gb|ADH09590.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|326942978|gb|AEA18874.1| cold shock protein [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 67

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N +KG+GFI      E GDDVF+H SA+   G  +L EGQ V +D V + 
Sbjct: 1  MNMQGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55

Query: 61 ANGKYSAENLKL 72
          A G  +A  +KL
Sbjct: 56 ARGPQAANVVKL 67


>gi|73918922|sp|Q5X9L4|CSPA_STRP6 RecName: Full=Major cold shock protein
          Length = 67

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI    STE+G DVF H SA+ ++G   L EGQ V +D
Sbjct: 3  QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTSGFKTLEEGQKVAFD 50


>gi|323492820|ref|ZP_08097962.1| cold-shock DNA-binding domain-containing protein [Vibrio
          brasiliensis LMG 20546]
 gi|323312891|gb|EGA66013.1| cold-shock DNA-binding domain-containing protein [Vibrio
          brasiliensis LMG 20546]
          Length = 70

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFITPE     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 7  GIVKWFNEEKGFGFITPE---NGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQ 57


>gi|254447090|ref|ZP_05060557.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium
          HTCC5015]
 gi|198263229|gb|EDY87507.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium
          HTCC5015]
          Length = 68

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KG+GFI P   TE GDD+F+H SA+   G   L EG  VT++ V+  
Sbjct: 1  MATAGTVKWFNNAKGFGFIVP---TEGGDDIFVHYSAIIGDGFKTLVEGDSVTFE-VEEG 56

Query: 61 ANGKYSAENLK 71
            GK +   +K
Sbjct: 57 PKGKLAQNVVK 67


>gi|291459899|ref|ZP_06599289.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
          F0262]
 gi|291417240|gb|EFE90959.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
          F0262]
          Length = 65

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW+N  KGYGFI    S E+G DVF+H S +A  G  +L EGQ V +D V + A G
Sbjct: 2  RGTVKWFNNQKGYGFI----SDETGKDVFVHYSGLAGEGFKSLEEGQAVEFDVV-DGAKG 56

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 57 PQATNVVKL 65


>gi|28871287|ref|NP_793906.1| cold shock protein CapB [Pseudomonas syringae pv. tomato str.
          DC3000]
 gi|66047111|ref|YP_236952.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|70728640|ref|YP_258389.1| cold acclimation protein B-like protein [Pseudomonas fluorescens
          Pf-5]
 gi|71736780|ref|YP_273637.1| cold shock protein CapB [Pseudomonas syringae pv. phaseolicola
          1448A]
 gi|77457428|ref|YP_346933.1| cold-shock DNA-binding protein family protein [Pseudomonas
          fluorescens Pf0-1]
 gi|213970877|ref|ZP_03399000.1| cold acclimation protein B-related protein [Pseudomonas syringae
          pv. tomato T1]
 gi|229588835|ref|YP_002870954.1| cold shock protein [Pseudomonas fluorescens SBW25]
 gi|237798785|ref|ZP_04587246.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|257486637|ref|ZP_05640678.1| cold shock protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289626589|ref|ZP_06459543.1| cold shock protein [Pseudomonas syringae pv. aesculi str.
          NCPPB3681]
 gi|289647565|ref|ZP_06478908.1| cold shock protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289676765|ref|ZP_06497655.1| cold shock protein [Pseudomonas syringae pv. syringae FF5]
 gi|298488746|ref|ZP_07006775.1| Cold shock protein capB [Pseudomonas savastanoi pv. savastanoi
          NCPPB 3335]
 gi|301383772|ref|ZP_07232190.1| cold shock protein [Pseudomonas syringae pv. tomato Max13]
 gi|302059920|ref|ZP_07251461.1| cold shock protein [Pseudomonas syringae pv. tomato K40]
 gi|302184709|ref|ZP_07261382.1| cold shock protein [Pseudomonas syringae pv. syringae 642]
 gi|312959425|ref|ZP_07773942.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
 gi|330807866|ref|YP_004352328.1| transcription factor, Csd family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|60391849|sp|P0A105|CAPB_PSESM RecName: Full=Cold shock protein CapB; AltName: Full=Cold
          acclimation protein B
 gi|60391850|sp|P0A106|CAPB_PSEFR RecName: Full=Cold shock protein CapB; AltName: Full=C8.0;
          AltName: Full=Cold acclimation protein B
 gi|1513081|gb|AAC45997.1| cold acclimation protein B [Pseudomonas fragi]
 gi|28854537|gb|AAO57601.1| cold shock protein CapB [Pseudomonas syringae pv. tomato str.
          DC3000]
 gi|63257818|gb|AAY38914.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|68342939|gb|AAY90545.1| cold acclimation protein B-related protein [Pseudomonas
          fluorescens Pf-5]
 gi|71557333|gb|AAZ36544.1| cold shock protein CapB [Pseudomonas syringae pv. phaseolicola
          1448A]
 gi|77381431|gb|ABA72944.1| cold shock protein [Pseudomonas fluorescens Pf0-1]
 gi|213924400|gb|EEB57972.1| cold acclimation protein B-related protein [Pseudomonas syringae
          pv. tomato T1]
 gi|229360701|emb|CAY47559.1| cold shock protein [Pseudomonas fluorescens SBW25]
 gi|298156819|gb|EFH97910.1| Cold shock protein capB [Pseudomonas savastanoi pv. savastanoi
          NCPPB 3335]
 gi|311286142|gb|EFQ64706.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
 gi|320325639|gb|EFW81701.1| cold shock protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327078|gb|EFW83092.1| cold shock protein [Pseudomonas syringae pv. glycinea str. race
          4]
 gi|327375974|gb|AEA67324.1| putative Transcription factor, Csd family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
 gi|330889578|gb|EGH22239.1| cold shock protein [Pseudomonas syringae pv. mori str. 301020]
 gi|330898586|gb|EGH30005.1| cold shock protein [Pseudomonas syringae pv. japonica str.
          M301072PT]
 gi|330949989|gb|EGH50249.1| cold shock protein [Pseudomonas syringae Cit 7]
 gi|330973105|gb|EGH73171.1| cold shock protein [Pseudomonas syringae pv. aceris str.
          M302273PT]
 gi|331015681|gb|EGH95737.1| cold shock protein [Pseudomonas syringae pv. lachrymans str.
          M302278PT]
 gi|331021638|gb|EGI01695.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 69

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N +KG+GFITP    +SGDD+F+H  A+ S G  +L EGQ V++
Sbjct: 7  GTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSF 52


>gi|251794220|ref|YP_003008951.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
 gi|247541846|gb|ACS98864.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
          Length = 66

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ V ++ VQ   
Sbjct: 1  MQQGTVKWFNAEKGFGFIEVEG----GNDVFVHFSAIVGEGFKTLEEGQRVEFNVVQ--G 54

Query: 62 NGKYSAENL 70
          N    AEN+
Sbjct: 55 NRGPQAENV 63


>gi|270159041|ref|ZP_06187697.1| cold shock protein [Legionella longbeachae D-4968]
 gi|289166123|ref|YP_003456261.1| Cold shock-like protein CspD [Legionella longbeachae NSW150]
 gi|269987380|gb|EEZ93635.1| cold shock protein [Legionella longbeachae D-4968]
 gi|288859296|emb|CBJ13230.1| putative Cold shock-like protein CspD [Legionella longbeachae
          NSW150]
          Length = 76

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +KW+N  KG+GFI PE     GDD+F+H S++   G   L  GQ+V YD  Q D
Sbjct: 3  RGEVKWFNNAKGWGFIIPE---NEGDDIFVHFSSIHGTGYKTLAPGQIVNYDVEQGD 56


>gi|254381082|ref|ZP_04996447.1| cold shock protein [Streptomyces sp. Mg1]
 gi|194339992|gb|EDX20958.1| cold shock protein [Streptomyces sp. Mg1]
          Length = 67

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +G    GDDVF H S +A+ G   L EGQ VT+D  Q      
Sbjct: 4  GTVKWFNAAKGFGFIEQDGG---GDDVFAHFSNIAAQGFRELLEGQKVTFDIAQGQKG-- 58

Query: 65 YSAENLKL 72
           +AEN+ L
Sbjct: 59 PTAENIVL 66


>gi|23098474|ref|NP_691940.1| cold shock protein [Oceanobacillus iheyensis HTE831]
 gi|22776700|dbj|BAC12975.1| cold shock protein [Oceanobacillus iheyensis HTE831]
          Length = 66

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ GS+KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ V++D
Sbjct: 1  MNTGSVKWFNAEKGFGFIEVEG----GDDVFVHFSAIQGEGFKTLEEGQSVSFD 50


>gi|46200113|ref|YP_005780.1| cold shock protein [Thermus thermophilus HB27]
 gi|46197741|gb|AAS82153.1| cold shock protein [Thermus thermophilus HB27]
          Length = 85

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 5/63 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  EG T    DVF+H +A+ + G   L EG +VT+D V+   
Sbjct: 13 MQKGRVKWFNAEKGYGFIEREGDT----DVFVHYTAINAKGFRTLNEGDIVTFD-VEPGR 67

Query: 62 NGK 64
          NGK
Sbjct: 68 NGK 70


>gi|28377809|ref|NP_784701.1| cold shock protein CspC [Lactobacillus plantarum WCFS1]
 gi|254555993|ref|YP_003062410.1| cold shock protein CspC [Lactobacillus plantarum JDM1]
 gi|300767794|ref|ZP_07077704.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308179985|ref|YP_003924113.1| cold shock protein CspC [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|28270642|emb|CAD63548.1| cold shock protein CspC [Lactobacillus plantarum WCFS1]
 gi|254044920|gb|ACT61713.1| cold shock protein CspC [Lactobacillus plantarum JDM1]
 gi|300494779|gb|EFK29937.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308045476|gb|ADN98019.1| cold shock protein CspC [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 66

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N DKG+GFIT     E+G DVF+H SA+   G  +L EGQ V +D  ++D
Sbjct: 1  MEHGTVKWFNADKGFGFIT----RENGSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESD 55


>gi|157826078|ref|YP_001493798.1| cold shock-like protein [Rickettsia akari str. Hartford]
 gi|157800036|gb|ABV75290.1| cold shock-like protein [Rickettsia akari str. Hartford]
          Length = 70

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  E     G DVF+H+SAV + GL +L EGQ V +D    +  GK
Sbjct: 7  GKVKWYNSTKNFGFIEQENG---GKDVFVHKSAVEATGLHSLEEGQDVIFDL--EEKQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAVNLRI 69


>gi|302557416|ref|ZP_07309758.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
 gi|302475034|gb|EFL38127.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
          Length = 67

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H SA+ + G   L EGQ VT+D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSAINATGFRELQEGQAVTFDVTQGQKGPQ 60

Query: 65 YSAENLKLV 73
            AEN+ L 
Sbjct: 61 --AENINLA 67


>gi|225850576|ref|YP_002730810.1| hypothetical protein PERMA_1024 [Persephonella marina EX-H1]
 gi|225644787|gb|ACO02973.1| conserved domain protein [Persephonella marina EX-H1]
          Length = 68

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KGYGFIT +   +   DVF+H SA+A  G   L EGQ V +D VQ D
Sbjct: 1  MRLTGTVKWFNSKKGYGFITRD---DGQGDVFVHFSAIAENGFKTLEEGQKVEFDVVQED 57

Query: 61 ANGKYSAENL 70
             K  A+N+
Sbjct: 58 KGQK--AQNV 65


>gi|134099205|ref|YP_001104866.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|291009987|ref|ZP_06567960.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|133911828|emb|CAM01941.1| cold-shock DNA-binding domain protein [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 67

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P+     G DVF+H SA+ S G  +L E Q VTYD  Q
Sbjct: 3  QGTVKWFNSEKGFGFIAPDAG---GPDVFVHYSAIDSTGFRSLEENQQVTYDVTQ 54


>gi|55980144|ref|YP_143441.1| cold shock protein [Thermus thermophilus HB8]
 gi|291463422|pdb|3A0J|A Chain A, Crystal Structure Of Cold Shock Protein 1 From Thermus
          Thermophilus Hb8
 gi|291463423|pdb|3A0J|B Chain B, Crystal Structure Of Cold Shock Protein 1 From Thermus
          Thermophilus Hb8
 gi|27374959|dbj|BAC53777.1| cold shock protein homolog [Thermus thermophilus]
 gi|55771557|dbj|BAD69998.1| cold shock protein [Thermus thermophilus HB8]
          Length = 73

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 5/63 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  EG T    DVF+H +A+ + G   L EG +VT+D V+   
Sbjct: 1  MQKGRVKWFNAEKGYGFIEREGDT----DVFVHYTAINAKGFRTLNEGDIVTFD-VEPGR 55

Query: 62 NGK 64
          NGK
Sbjct: 56 NGK 58


>gi|152995290|ref|YP_001340125.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836214|gb|ABR70190.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
           MWYL1]
          Length = 156

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++KW+N  KG+GF+T     E+GDDVF+H  A+   G   L EGQLV + YV     G
Sbjct: 91  QGTVKWFNSSKGFGFLT----MENGDDVFVHYRAIRGRGRRFLVEGQLVRF-YVTEGEKG 145

Query: 64  KYSAENLKLV 73
           K  AEN+ ++
Sbjct: 146 K-QAENVSII 154


>gi|302538788|ref|ZP_07291130.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302447683|gb|EFL19499.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 67

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H SA+ S G   L EGQ VT+D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSAINSTGYRELQEGQAVTFDVTQGQKGPQ 60

Query: 65 YSAENLKLV 73
            AEN+ L 
Sbjct: 61 --AENINLA 67


>gi|257869655|ref|ZP_05649308.1| cold-shock protein [Enterococcus gallinarum EG2]
 gi|257803819|gb|EEV32641.1| cold-shock protein [Enterococcus gallinarum EG2]
          Length = 66

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFIT +G    GDDVF+H SA+   G  +L EGQ V +  V+  A
Sbjct: 1  MEHGKVKWFNNEKGFGFITVDG----GDDVFVHFSAIQGDGFKSLEEGQEVEFSIVEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +AE  K+
Sbjct: 56 RGPQAAEVTKI 66


>gi|85715709|ref|ZP_01046688.1| cold shock protein [Nitrobacter sp. Nb-311A]
 gi|85697362|gb|EAQ35241.1| cold shock protein [Nitrobacter sp. Nb-311A]
          Length = 62

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 5/66 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  K YGFI P+     G  VF+H SAV  AGL +L EG  V+Y+ V N   GK S
Sbjct: 1  MKWFNGQKSYGFIAPD---NGGKVVFVHISAVEKAGLGSLNEGDKVSYEVVVN--RGKES 55

Query: 67 AENLKL 72
          AENL++
Sbjct: 56 AENLRV 61


>gi|50915110|ref|YP_061082.1| cold shock protein [Streptococcus pyogenes MGAS10394]
 gi|50904184|gb|AAT87899.1| Cold shock protein [Streptococcus pyogenes MGAS10394]
          Length = 69

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI    STE+G DVF H SA+ ++G   L EGQ V +D
Sbjct: 5  QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTSGFKTLEEGQKVAFD 52


>gi|332971719|gb|EGK10667.1| cold shock protein CspA [Desmospora sp. 8437]
          Length = 65

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N +KGYGFI  EG    GDDVF+H SA+   G   L EGQ V ++ V+
Sbjct: 2  QGKVKWFNAEKGYGFIEREG----GDDVFVHYSAIQEEGFKTLDEGQTVEFEIVE 52


>gi|317127033|ref|YP_004093315.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
 gi|315471981|gb|ADU28584.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
          Length = 65

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ V ++ V  D  G 
Sbjct: 3  GKVKWFNSEKGFGFIEREG----GDDVFVHFSAIQGEGFKTLEEGQEVEFEIVDGD-RGP 57

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 58 QAANVVKL 65


>gi|158425669|ref|YP_001526961.1| cold shock protein [Azorhizobium caulinodans ORS 571]
 gi|158332558|dbj|BAF90043.1| cold shock protein [Azorhizobium caulinodans ORS 571]
          Length = 237

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KWYNP+KG+GFI  EG    G DVF+H + V+ +GL +L+EGQ V     Q
Sbjct: 173 GTVKWYNPEKGFGFIAVEG---GGKDVFVHVTVVSRSGLADLSEGQRVVVQVGQ 223



 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+NP+KG+GF+  E S  SG DVFLH  A+ +AG  ++  G  ++    Q    G+ 
Sbjct: 69  TVKWFNPEKGFGFV--ELSDGSG-DVFLHARALEAAGQESVPPGSKLSVRVGQGQ-KGRQ 124

Query: 66  SAENLKL 72
             E L++
Sbjct: 125 VTEVLEV 131


>gi|290510381|ref|ZP_06549751.1| cold shock protein (beta-ribbon, CspA family) [Klebsiella sp.
          1_1_55]
 gi|289777097|gb|EFD85095.1| cold shock protein (beta-ribbon, CspA family) [Klebsiella sp.
          1_1_55]
          Length = 97

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++ + N A G
Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 88

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 89 PSAANVMAI 97


>gi|206579703|ref|YP_002239721.1| cold shock protein CspE [Klebsiella pneumoniae 342]
 gi|288936563|ref|YP_003440622.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|206568761|gb|ACI10537.1| cold shock protein CspE [Klebsiella pneumoniae 342]
 gi|288891272|gb|ADC59590.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
          Length = 69

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++ + N A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVMAI 69


>gi|54293420|ref|YP_125835.1| hypothetical protein lpl0469 [Legionella pneumophila str. Lens]
 gi|53753252|emb|CAH14699.1| hypothetical protein lpl0469 [Legionella pneumophila str. Lens]
          Length = 77

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +KW+N  KG+GFI PEG    G+D+F+H S++   G   L  GQ VTYD +  +
Sbjct: 3  RGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLVPGQAVTYDVINGE 56


>gi|330983211|gb|EGH81314.1| cold shock protein [Pseudomonas syringae pv. aptata str. DSM
          50252]
          Length = 67

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N +KG+GFITP    +SGDD+F+H  A+ S G  +L EGQ V++
Sbjct: 5  GTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSF 50


>gi|85374781|ref|YP_458843.1| cold shock protein [Erythrobacter litoralis HTCC2594]
 gi|84787864|gb|ABC64046.1| Cold shock protein [Erythrobacter litoralis HTCC2594]
          Length = 70

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G++K++N DKGYGFI P +GS +S    F+H SAV +AG+  L + Q + YD V+ 
Sbjct: 1  MAKTGTVKFFNEDKGYGFIQPDDGSADS----FVHISAVQAAGMQTLDKEQRLNYD-VEQ 55

Query: 60 DANGKYSAENL 70
            NGK SA NL
Sbjct: 56 GRNGKESAVNL 66


>gi|229020404|ref|ZP_04177159.1| hypothetical protein bcere0030_48910 [Bacillus cereus AH1273]
 gi|229026633|ref|ZP_04182975.1| hypothetical protein bcere0029_49020 [Bacillus cereus AH1272]
 gi|228734666|gb|EEL85318.1| hypothetical protein bcere0029_49020 [Bacillus cereus AH1272]
 gi|228740883|gb|EEL91126.1| hypothetical protein bcere0030_48910 [Bacillus cereus AH1273]
          Length = 89

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N +KG+GFI      E GDDVF+H SA+   G  +L EGQ V +D V + 
Sbjct: 23 MNMQGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 77

Query: 61 ANGKYSAENLKL 72
          A G  +A  +KL
Sbjct: 78 ARGPQAANVVKL 89


>gi|9968446|emb|CAC06102.1| cold shock protein [Lactobacillus plantarum]
          Length = 66

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N DKG+GFIT     E+G DVF+H SA+   G  +L EGQ V +D  ++D
Sbjct: 1  MEHGTVKWFNADKGFGFIT----RENGSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESD 55


>gi|239995438|ref|ZP_04715962.1| putative Cold shock-like protein [Alteromonas macleodii ATCC
          27126]
          Length = 70

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITPE     G DVF+H  ++AS G   L EGQ V+++  Q
Sbjct: 7  GTVKWFNEEKGFGFITPEA---GGKDVFVHFRSIASDGFKTLKEGQEVSFEVEQ 57


>gi|291303552|ref|YP_003514830.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia
          nassauensis DSM 44728]
 gi|290572772|gb|ADD45737.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis
          DSM 44728]
          Length = 66

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N +KGYGF+  +G    G+DVF+H SA+ + G  +L +GQ V +D  Q     
Sbjct: 3  QGSVKWFNAEKGYGFLAVDG----GEDVFVHFSAIQADGYRSLEDGQRVEFDIAQGQKGP 58

Query: 64 KYSAENLKLV 73
          +  AEN+++V
Sbjct: 59 Q--AENVRIV 66


>gi|104783408|ref|YP_609906.1| cold shock protein [Pseudomonas entomophila L48]
 gi|95112395|emb|CAK17122.1| cold shock protein [Pseudomonas entomophila L48]
          Length = 69

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KGYGFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDEKGYGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56


>gi|262376813|ref|ZP_06070040.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
 gi|262308158|gb|EEY89294.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
          Length = 71

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          V +G++KW+N  KG+GFI      ESG DVF H S +AS+G   L EGQLV +   Q
Sbjct: 6  VVKGTVKWFNETKGFGFI----QQESGPDVFAHFSEIASSGFKTLMEGQLVEFSVAQ 58


>gi|205374414|ref|ZP_03227211.1| cold shock protein [Bacillus coahuilensis m4-4]
          Length = 66

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G +KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ VT+D
Sbjct: 1  MNTGKVKWFNAEKGFGFIEVEG----GDDVFVHFSAIQGEGFKTLEEGQSVTFD 50


>gi|304391309|ref|ZP_07373253.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
 gi|303296665|gb|EFL91021.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
          Length = 68

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 4/61 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K++N  KGYGFITP+   + G D+F+H SAV  +GL  L+EG  +T+D V+ D  G
Sbjct: 2  QGHVKFFNAAKGYGFITPD---DGGADIFVHISAVEQSGLTTLSEGSAITFD-VEPDKKG 57

Query: 64 K 64
          K
Sbjct: 58 K 58


>gi|157691252|ref|YP_001485714.1| cold-shock protein [Bacillus pumilus SAFR-032]
 gi|157680010|gb|ABV61154.1| cold-shock protein [Bacillus pumilus SAFR-032]
          Length = 67

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI      E GDDVF+H SA+   G  +L EGQ V++D V+  +
Sbjct: 1  MEQGTVKWFNAEKGFGFI----EREEGDDVFVHFSAIQGDGFKSLDEGQKVSFD-VEQGS 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 RGAQAANVQKI 66


>gi|126735271|ref|ZP_01751017.1| cold shock family protein [Roseobacter sp. CCS2]
 gi|126715826|gb|EBA12691.1| cold shock family protein [Roseobacter sp. CCS2]
          Length = 69

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G D+F+H SAV  +GL  L + Q VT+D ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPD---DGGADIFVHISAVEQSGLTGLADDQKVTFDLIEG-RDGR 59

Query: 65 YSAENLKLV 73
            A N+  V
Sbjct: 60 QMAGNIAKV 68


>gi|91209672|ref|YP_539658.1| cold shock protein CspE [Escherichia coli UTI89]
 gi|237707404|ref|ZP_04537885.1| cold shock protein E [Escherichia sp. 3_2_53FAA]
 gi|332281760|ref|ZP_08394173.1| cold shock protein E [Shigella sp. D9]
 gi|26107003|gb|AAN79187.1|AE016757_91 Cold shock-like protein cspE [Escherichia coli CFT073]
 gi|91071246|gb|ABE06127.1| cold shock-like protein CspE [Escherichia coli UTI89]
 gi|226898614|gb|EEH84873.1| cold shock protein E [Escherichia sp. 3_2_53FAA]
 gi|332104112|gb|EGJ07458.1| cold shock protein E [Shigella sp. D9]
          Length = 97

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++ + N A G
Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 88

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 89 PSAANVIAL 97


>gi|302552862|ref|ZP_07305204.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
 gi|302470480|gb|EFL33573.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
          Length = 67

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G DVF H S +A++G   L EGQ VT+D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIEQEGG---GPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|119477239|ref|ZP_01617475.1| cold-shock DNA-binding domain family protein [marine gamma
          proteobacterium HTCC2143]
 gi|119449602|gb|EAW30840.1| cold-shock DNA-binding domain family protein [marine gamma
          proteobacterium HTCC2143]
          Length = 68

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58
          +G++KW+NPDKG+GFITPE   + G D+F+H S + S G F  L +GQ V ++  Q
Sbjct: 3  KGTVKWFNPDKGFGFITPE---DGGKDLFVHHSEIQSGGGFATLNDGQDVEFEVGQ 55


>gi|114704723|ref|ZP_01437631.1| cold shock protein [Fulvimarina pelagi HTCC2506]
 gi|114539508|gb|EAU42628.1| cold shock protein [Fulvimarina pelagi HTCC2506]
          Length = 70

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+IK++N  KG+GF+TPEG ++   DVFLH SA+  +G+ ++ EG  +T+D  + D
Sbjct: 1  MSQTGTIKFFNESKGFGFVTPEGGSK---DVFLHISALERSGISSVQEGDKITFD-TEPD 56

Query: 61 ANGK-YSAENLKL 72
            GK   A N++L
Sbjct: 57 PRGKGPKAVNIQL 69


>gi|84516461|ref|ZP_01003820.1| cold shock family protein [Loktanella vestfoldensis SKA53]
 gi|84509497|gb|EAQ05955.1| cold shock family protein [Loktanella vestfoldensis SKA53]
          Length = 69

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G+D+F+H SAV  +G+  L + Q +T+D V+   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPD---DGGNDIFVHISAVEQSGMTGLADNQKITFDLVEG-RDGR 59

Query: 65 YSAENL 70
            A NL
Sbjct: 60 KMAGNL 65


>gi|290958776|ref|YP_003489958.1| cold shock protein [Streptomyces scabiei 87.22]
 gi|260648302|emb|CBG71413.1| cold shock protein [Streptomyces scabiei 87.22]
          Length = 67

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G DVF H S +A++G   L EGQ VT+D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIEQEGG---GPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|190575401|ref|YP_001973246.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
 gi|194366737|ref|YP_002029347.1| cold-shock DNA-binding domain-containing protein
          [Stenotrophomonas maltophilia R551-3]
 gi|254524874|ref|ZP_05136929.1| putative 'Cold-shock' DNA-binding domain protein
          [Stenotrophomonas sp. SKA14]
 gi|190013323|emb|CAQ46957.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
 gi|194349541|gb|ACF52664.1| cold-shock DNA-binding domain protein [Stenotrophomonas
          maltophilia R551-3]
 gi|219722465|gb|EED40990.1| putative 'Cold-shock' DNA-binding domain protein
          [Stenotrophomonas sp. SKA14]
          Length = 68

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+PE   +   DVF H SA+ S G  +L EGQ VTYD  Q
Sbjct: 4  GTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVTYDVTQ 54


>gi|110804727|ref|YP_688247.1| cold shock protein CspE [Shigella flexneri 5 str. 8401]
 gi|110614275|gb|ABF02942.1| cold shock protein [Shigella flexneri 5 str. 8401]
 gi|281600039|gb|ADA73023.1| Cold shock protein [Shigella flexneri 2002017]
          Length = 97

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++ + N A G
Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 88

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 89 PSAANVIAL 97


>gi|328951487|ref|YP_004368822.1| cold-shock DNA-binding domain protein [Marinithermus
          hydrothermalis DSM 14884]
 gi|328451811|gb|AEB12712.1| cold-shock DNA-binding domain protein [Marinithermus
          hydrothermalis DSM 14884]
          Length = 72

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI      ESG DVF+H SA+   G   L EG +VT++ ++  A
Sbjct: 1  MEKGRVKWFNAEKGYGFI----ERESGGDVFVHFSAINGTGFRTLNEGDVVTFE-IKQAA 55

Query: 62 NGKYSAENLKLVPKSSN 78
           G  +A+N+ +V  +S 
Sbjct: 56 KGP-AADNVTVVEPASQ 71


>gi|109900083|ref|YP_663338.1| cold-shock DNA-binding domain-containing protein
          [Pseudoalteromonas atlantica T6c]
 gi|109702364|gb|ABG42284.1| cold-shock DNA-binding protein family [Pseudoalteromonas
          atlantica T6c]
          Length = 69

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N DKG+GFI      ESG DVF H SA+ S G   L EGQ V +   Q     +
Sbjct: 7  GSVKWFNEDKGFGFI----EQESGPDVFAHFSAIVSEGFKTLAEGQRVEFTVTQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AEN+  +
Sbjct: 63 --AENIVCI 69


>gi|302037950|ref|YP_003798272.1| cold shock protein CspA [Candidatus Nitrospira defluvii]
 gi|300606014|emb|CBK42347.1| Cold shock protein CspA [Candidatus Nitrospira defluvii]
          Length = 72

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 5/77 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  KG+GFI  +G    GDDVF+H SA+   G   L EG+ V +D VQ  
Sbjct: 1  MKTKGTVKWFNDRKGFGFIRLDG----GDDVFVHYSALQGEGFKTLKEGENVEFDIVQG- 55

Query: 61 ANGKYSAENLKLVPKSS 77
          A G  +A  LK +  +S
Sbjct: 56 AKGPQAANVLKDLATAS 72


>gi|209809400|ref|YP_002264938.1| cold shock-like protein [Aliivibrio salmonicida LFI1238]
 gi|208010962|emb|CAQ81368.1| cold shock-like protein [Aliivibrio salmonicida LFI1238]
          Length = 69

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N DKG+GFIT E     G DVF H SA+ S G   L EGQ VT++  Q
Sbjct: 6  GTVKWFNEDKGFGFITQE---NGGPDVFAHFSAIQSEGFKTLKEGQAVTFEVEQ 56


>gi|94971545|ref|YP_593593.1| cold-shock DNA-binding protein family protein [Candidatus
          Koribacter versatilis Ellin345]
 gi|94553595|gb|ABF43519.1| cold-shock DNA-binding protein family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KGYGFI    S ++G+DVF+H SA+ S G  +L EGQ VT+  V+
Sbjct: 1  MEQGTVKWFNDAKGYGFI----SRQNGEDVFVHFSAIESKGFRSLQEGQAVTFSVVK 53


>gi|331641125|ref|ZP_08342260.1| cold shock protein [Escherichia coli H736]
 gi|331645781|ref|ZP_08346884.1| cold shock protein [Escherichia coli M605]
 gi|331651632|ref|ZP_08352651.1| cold shock protein [Escherichia coli M718]
 gi|331672164|ref|ZP_08372956.1| cold shock protein [Escherichia coli TA280]
 gi|331676282|ref|ZP_08376994.1| cold shock protein [Escherichia coli H591]
 gi|1778540|gb|AAB40823.1| cold shock-like protein [Escherichia coli]
 gi|331037923|gb|EGI10143.1| cold shock protein [Escherichia coli H736]
 gi|331044533|gb|EGI16660.1| cold shock protein [Escherichia coli M605]
 gi|331049910|gb|EGI21968.1| cold shock protein [Escherichia coli M718]
 gi|331070631|gb|EGI41994.1| cold shock protein [Escherichia coli TA280]
 gi|331076340|gb|EGI47622.1| cold shock protein [Escherichia coli H591]
 gi|332097718|gb|EGJ02692.1| cold shock-like protein cspI [Shigella boydii 3594-74]
          Length = 79

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++ + N A G
Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 70

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 71 PSAANVIAL 79


>gi|315644644|ref|ZP_07897776.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|329928423|ref|ZP_08282293.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
 gi|315280151|gb|EFU43448.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|328937859|gb|EGG34265.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G+DVF+H SA+   G  +L EGQ V ++ VQ   
Sbjct: 1  MQTGTVKWFNAEKGFGFIEVEG----GEDVFVHFSAITGDGFKSLDEGQRVEFNVVQ--G 54

Query: 62 NGKYSAENL 70
          N    AEN+
Sbjct: 55 NRGQQAENV 63


>gi|257078464|ref|ZP_05572825.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|257091195|ref|ZP_05585556.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|294779596|ref|ZP_06744987.1| major cold shock protein CspA [Enterococcus faecalis PC1.1]
 gi|307269865|ref|ZP_07551192.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|312902662|ref|ZP_07761867.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|256986494|gb|EEU73796.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|257000007|gb|EEU86527.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|294453253|gb|EFG21664.1| major cold shock protein CspA [Enterococcus faecalis PC1.1]
 gi|306513772|gb|EFM82377.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|310634000|gb|EFQ17283.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|315162264|gb|EFU06281.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
 gi|315579305|gb|EFU91496.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+ + G   L EGQ VT+D
Sbjct: 1  MNNGTVKWFNADKGFGFITG----EDGNDVFAHFSAIQTDGFKTLDEGQTVTFD 50


>gi|148253260|ref|YP_001237845.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
          BTAi1]
 gi|146405433|gb|ABQ33939.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
          Length = 71

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +L+EGQ ++++ V+ D
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLSEGQRISFE-VEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KKGK 60


>gi|147679090|ref|YP_001213305.1| cold shock proteins [Pelotomaculum thermopropionicum SI]
 gi|146275187|dbj|BAF60936.1| cold shock proteins [Pelotomaculum thermopropionicum SI]
          Length = 65

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI      E G DVF+H SA+   G   L EGQ V +D V+  A G 
Sbjct: 3  GKVKWFNQEKGYGFI----EREDGGDVFVHFSAIQEEGFKTLAEGQKVEFDIVEG-ARGP 57

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 58 QAANVIKL 65


>gi|70729479|ref|YP_259217.1| cold shock protein capa, fragment-like protein [Pseudomonas
          fluorescens Pf-5]
 gi|312961945|ref|ZP_07776442.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
 gi|68343778|gb|AAY91384.1| cold shock protein capa [Pseudomonas fluorescens Pf-5]
 gi|311283755|gb|EFQ62339.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
          Length = 91

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ V++
Sbjct: 28 GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 74


>gi|258590957|emb|CBE67252.1| Cold shock protein, DNA binding [NC10 bacterium 'Dutch sediment']
          Length = 68

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 4/53 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G++KW+N  KGYGFI    + E GDDVF+H SA++ +G  +L EGQ V +D V
Sbjct: 5  GTVKWFNDAKGYGFI----AREDGDDVFVHYSAISGSGFRSLNEGQAVEFDVV 53


>gi|257865157|ref|ZP_05644810.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC30]
 gi|257871481|ref|ZP_05651134.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC10]
 gi|257874772|ref|ZP_05654425.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC20]
 gi|325571583|ref|ZP_08147083.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
 gi|257799091|gb|EEV28143.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC30]
 gi|257805645|gb|EEV34467.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC10]
 gi|257808938|gb|EEV37758.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC20]
 gi|325156059|gb|EGC68255.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KG+GFI    S E G DVF+H SA+   G   L EGQ VT+D   +D
Sbjct: 1  MEQGTVKWFNAEKGFGFI----SREDGTDVFVHFSAIQGEGFKTLEEGQAVTFDVEDSD 55


>gi|254456290|ref|ZP_05069719.1| 'Cold-shock' DNA-binding domain, putative [Candidatus
          Pelagibacter sp. HTCC7211]
 gi|207083292|gb|EDZ60718.1| 'Cold-shock' DNA-binding domain, putative [Candidatus
          Pelagibacter sp. HTCC7211]
          Length = 68

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+NP KG+GFI  E   +   DVF+H SAV  AG+  L EGQ +T+D V++ 
Sbjct: 1  MSLQGKVKWFNPTKGFGFIEREDKEK---DVFVHVSAVRDAGMNGLDEGQALTFD-VEDG 56

Query: 61 ANGKYSAENLK 71
            G  SA NLK
Sbjct: 57 PKGP-SAVNLK 66


>gi|167757688|ref|ZP_02429815.1| hypothetical protein CLOSCI_00018 [Clostridium scindens ATCC
          35704]
 gi|167664708|gb|EDS08838.1| hypothetical protein CLOSCI_00018 [Clostridium scindens ATCC
          35704]
          Length = 104

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +++ G++KW+N +KGYGFIT     E G DVF+H SA+   G   L EGQ VT+D
Sbjct: 35 LMNNGTVKWFNSEKGYGFITG----EDGKDVFVHFSAIMCDGFKTLEEGQAVTFD 85


>gi|284007335|emb|CBA72699.1| cold shock protein CspE [Arsenophonus nasoniae]
          Length = 88

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITPEG    G DVF+H +A+   G   LT GQ V +D +Q  + G 
Sbjct: 25 GTVKWFNETKGFGFITPEG---GGKDVFVHYTAIDVNGFKTLTVGQKVEFD-IQEGSKGS 80

Query: 65 YSAENLKLV 73
           +A N+ ++
Sbjct: 81 -AANNVTII 88


>gi|237730609|ref|ZP_04561090.1| cold shock protein CspE [Citrobacter sp. 30_2]
 gi|226906148|gb|EEH92066.1| cold shock protein CspE [Citrobacter sp. 30_2]
          Length = 100

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++ + N A G
Sbjct: 36  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 91

Query: 64  KYSAENLKL 72
             +A  + L
Sbjct: 92  PSAANVIAL 100


>gi|189426235|ref|YP_001953412.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
 gi|189422494|gb|ACD96892.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
          Length = 67

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N  KG+GFI  EG    G+DVF H SA+ S G  +L EG+ V++D VQ
Sbjct: 3  QGKVKWFNDTKGFGFIEQEG----GEDVFAHFSAIQSEGFKSLAEGESVSFDIVQ 53


>gi|149911304|ref|ZP_01899925.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
 gi|149805619|gb|EDM65621.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
          Length = 67

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 38/52 (73%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          RG++KW+N DKG+GFITP+   E G+D+F+H S + ++G   L +GQ V ++
Sbjct: 3  RGTVKWFNADKGFGFITPD---EGGNDLFVHHSEIQTSGYATLEDGQKVEFE 51


>gi|32490926|ref|NP_871180.1| cold shock protein CspE [Wigglesworthia glossinidia endosymbiont
          of Glossina brevipalpis]
 gi|25166132|dbj|BAC24323.1| cspE [Wigglesworthia glossinidia endosymbiont of Glossina
          brevipalpis]
          Length = 69

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++ + N A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 60

Query: 64 KYSA 67
            +A
Sbjct: 61 PSAA 64


>gi|257865337|ref|ZP_05644990.1| cold-shock protein [Enterococcus casseliflavus EC30]
 gi|257871667|ref|ZP_05651320.1| cold-shock protein [Enterococcus casseliflavus EC10]
 gi|325571430|ref|ZP_08146930.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
 gi|257799271|gb|EEV28323.1| cold-shock protein [Enterococcus casseliflavus EC30]
 gi|257805831|gb|EEV34653.1| cold-shock protein [Enterococcus casseliflavus EC10]
 gi|325155906|gb|EGC68102.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+   G   L EGQ VT+D
Sbjct: 1  MNNGTVKWFNADKGFGFITG----EDGNDVFAHFSAIQGDGFKTLEEGQAVTFD 50


>gi|322382422|ref|ZP_08056325.1| major cold-shock protein RNA helicase co-factor RNA
          co-chaperone-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321153639|gb|EFX46018.1| major cold-shock protein RNA helicase co-factor RNA
          co-chaperone-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 65

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI      E G DVF+H SA+   G   L EGQ V +D V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFI----EREDGGDVFVHFSAIQGEGFKTLEEGQSVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|227550363|ref|ZP_03980412.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecium TX1330]
 gi|257879582|ref|ZP_05659235.1| cold-shock domain-contain protein [Enterococcus faecium
          1,230,933]
 gi|257882601|ref|ZP_05662254.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,502]
 gi|257885024|ref|ZP_05664677.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,501]
 gi|257888396|ref|ZP_05668049.1| cold-shock domain-contain protein [Enterococcus faecium
          1,141,733]
 gi|257890250|ref|ZP_05669903.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,410]
 gi|257893434|ref|ZP_05673087.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,408]
 gi|257897230|ref|ZP_05676883.1| cold-shock domain-contain protein [Enterococcus faecium Com12]
 gi|257899231|ref|ZP_05678884.1| cold-shock domain-contain protein [Enterococcus faecium Com15]
 gi|258616807|ref|ZP_05714577.1| cold-shock domain-contain protein [Enterococcus faecium DO]
 gi|260559753|ref|ZP_05831933.1| cold-shock domain-containing protein [Enterococcus faecium C68]
 gi|261207314|ref|ZP_05922001.1| cold-shock domain-containing protein [Enterococcus faecium TC 6]
 gi|289566513|ref|ZP_06446936.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
 gi|293378002|ref|ZP_06624180.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
 gi|293557236|ref|ZP_06675784.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293559750|ref|ZP_06676271.1| cold shock protein [Enterococcus faecium E1162]
 gi|293567614|ref|ZP_06678958.1| cold-shock protein [Enterococcus faecium E1071]
 gi|293570377|ref|ZP_06681434.1| cold-shock protein [Enterococcus faecium E980]
 gi|294616534|ref|ZP_06696312.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294618375|ref|ZP_06697953.1| cold shock protein [Enterococcus faecium E1679]
 gi|294623246|ref|ZP_06702117.1| cold shock protein [Enterococcus faecium U0317]
 gi|314938910|ref|ZP_07846177.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|314943096|ref|ZP_07849897.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|314948107|ref|ZP_07851508.1| major cold shock protein CspA [Enterococcus faecium TX0082]
 gi|314951627|ref|ZP_07854672.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|314993868|ref|ZP_07859202.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|314996709|ref|ZP_07861732.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|227180502|gb|EEI61474.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecium TX1330]
 gi|257813810|gb|EEV42568.1| cold-shock domain-contain protein [Enterococcus faecium
          1,230,933]
 gi|257818259|gb|EEV45587.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,502]
 gi|257820876|gb|EEV48010.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,501]
 gi|257824450|gb|EEV51382.1| cold-shock domain-contain protein [Enterococcus faecium
          1,141,733]
 gi|257826610|gb|EEV53236.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,410]
 gi|257829813|gb|EEV56420.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,408]
 gi|257833795|gb|EEV60216.1| cold-shock domain-contain protein [Enterococcus faecium Com12]
 gi|257837143|gb|EEV62217.1| cold-shock domain-contain protein [Enterococcus faecium Com15]
 gi|260074421|gb|EEW62743.1| cold-shock domain-containing protein [Enterococcus faecium C68]
 gi|260078374|gb|EEW66078.1| cold-shock domain-containing protein [Enterococcus faecium TC 6]
 gi|289161667|gb|EFD09544.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
 gi|291589715|gb|EFF21519.1| cold-shock protein [Enterococcus faecium E1071]
 gi|291590581|gb|EFF22312.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291595352|gb|EFF26667.1| cold shock protein [Enterococcus faecium E1679]
 gi|291597353|gb|EFF28533.1| cold shock protein [Enterococcus faecium U0317]
 gi|291600600|gb|EFF30904.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291606298|gb|EFF35711.1| cold shock protein [Enterococcus faecium E1162]
 gi|291609555|gb|EFF38820.1| cold-shock protein [Enterococcus faecium E980]
 gi|292643367|gb|EFF61499.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
 gi|313589147|gb|EFR67992.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|313591678|gb|EFR70523.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|313596223|gb|EFR75068.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|313598198|gb|EFR77043.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|313641784|gb|EFS06364.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|313645443|gb|EFS10023.1| major cold shock protein CspA [Enterococcus faecium TX0082]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N +KG+GFI    S E G DVF+H SA+   G   L EGQ VT+D  ++D
Sbjct: 1  MENGTVKWFNAEKGFGFI----SREDGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESD 55


>gi|218294620|ref|ZP_03495474.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23]
 gi|218244528|gb|EED11052.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23]
          Length = 73

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 5/63 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  EG T    DVF+H SA+ + G   L EG +VT++ V+   
Sbjct: 1  MQKGRVKWFNAEKGYGFIEREGDT----DVFVHFSAINAKGFRTLNEGDIVTFE-VEPGK 55

Query: 62 NGK 64
          NGK
Sbjct: 56 NGK 58


>gi|187926455|ref|YP_001892800.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
 gi|241665942|ref|YP_002984301.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
 gi|309778741|ref|ZP_07673514.1| cold shock transcription regulator protein [Ralstonia sp.
          5_7_47FAA]
 gi|187728209|gb|ACD29373.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
 gi|240867969|gb|ACS65629.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
 gi|308922449|gb|EFP68073.1| cold shock transcription regulator protein [Ralstonia sp.
          5_7_47FAA]
          Length = 67

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + G+D+F H SA+ SAG  +L EGQ V+++  Q
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFAHFSAINSAGFKSLKEGQKVSFEVTQ 54


>gi|15800338|ref|NP_286350.1| cold shock protein CspE [Escherichia coli O157:H7 EDL933]
 gi|15829916|ref|NP_308689.1| cold shock protein CspE [Escherichia coli O157:H7 str. Sakai]
 gi|16128606|ref|NP_415156.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. MG1655]
 gi|30062187|ref|NP_836358.1| cold shock protein CspE [Shigella flexneri 2a str. 2457T]
 gi|56479711|ref|NP_706586.2| cold shock protein CspE [Shigella flexneri 2a str. 301]
 gi|74311159|ref|YP_309578.1| cold shock protein CspE [Shigella sonnei Ss046]
 gi|82543070|ref|YP_407017.1| cold shock protein CspE [Shigella boydii Sb227]
 gi|82775893|ref|YP_402240.1| cold shock protein CspE [Shigella dysenteriae Sd197]
 gi|89107492|ref|AP_001272.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. W3110]
 gi|110640853|ref|YP_668581.1| cold shock protein CspE [Escherichia coli 536]
 gi|157157595|ref|YP_001461790.1| cold shock protein CspE [Escherichia coli E24377A]
 gi|157160119|ref|YP_001457437.1| cold shock protein CspE [Escherichia coli HS]
 gi|161486286|ref|NP_752643.2| cold shock protein CspE [Escherichia coli CFT073]
 gi|161504197|ref|YP_001571309.1| cold shock protein CspE [Salmonella enterica subsp. arizonae
          serovar 62:z4,z23:-- str. RSK2980]
 gi|168752651|ref|ZP_02777673.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4113]
 gi|168754726|ref|ZP_02779733.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4401]
 gi|168770227|ref|ZP_02795234.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4486]
 gi|168774688|ref|ZP_02799695.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4196]
 gi|168779115|ref|ZP_02804122.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4076]
 gi|168786472|ref|ZP_02811479.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC869]
 gi|168798185|ref|ZP_02823192.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC508]
 gi|170021018|ref|YP_001725972.1| cold shock protein CspE [Escherichia coli ATCC 8739]
 gi|170080204|ref|YP_001729524.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. DH10B]
 gi|170080305|ref|YP_001729625.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. DH10B]
 gi|170682098|ref|YP_001742740.1| cold shock protein CspE [Escherichia coli SMS-3-5]
 gi|170767751|ref|ZP_02902204.1| cold shock protein CspE [Escherichia albertii TW07627]
 gi|187731707|ref|YP_001879293.1| cold shock protein CspE [Shigella boydii CDC 3083-94]
 gi|188493277|ref|ZP_03000547.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|191167329|ref|ZP_03029145.1| cold shock protein CspE [Escherichia coli B7A]
 gi|191172339|ref|ZP_03033881.1| cold shock protein CspE [Escherichia coli F11]
 gi|193063391|ref|ZP_03044481.1| cold shock protein CspE [Escherichia coli E22]
 gi|193069066|ref|ZP_03050024.1| cold shock protein CspE [Escherichia coli E110019]
 gi|194427975|ref|ZP_03060520.1| cold shock protein CspE [Escherichia coli B171]
 gi|194432522|ref|ZP_03064808.1| cold shock protein CspE [Shigella dysenteriae 1012]
 gi|194437525|ref|ZP_03069622.1| cold shock protein CspE [Escherichia coli 101-1]
 gi|195936173|ref|ZP_03081555.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4024]
 gi|208816170|ref|ZP_03257349.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4045]
 gi|208823205|ref|ZP_03263523.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4042]
 gi|209399192|ref|YP_002269259.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4115]
 gi|209917882|ref|YP_002291966.1| cold shock protein CspE [Escherichia coli SE11]
 gi|215485665|ref|YP_002328096.1| cold shock protein CspE [Escherichia coli O127:H6 str. E2348/69]
 gi|217324540|ref|ZP_03440624.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14588]
 gi|218549799|ref|YP_002383590.1| cold shock protein CspE [Escherichia fergusonii ATCC 35469]
 gi|218553166|ref|YP_002386079.1| cold shock protein CspE [Escherichia coli IAI1]
 gi|218557563|ref|YP_002390476.1| cold shock protein CspE [Escherichia coli S88]
 gi|218688447|ref|YP_002396659.1| cold shock protein CspE [Escherichia coli ED1a]
 gi|218694064|ref|YP_002401731.1| cold shock protein CspE [Escherichia coli 55989]
 gi|218698996|ref|YP_002406625.1| cold shock protein CspE [Escherichia coli IAI39]
 gi|218703957|ref|YP_002411476.1| cold shock protein CspE [Escherichia coli UMN026]
 gi|227884397|ref|ZP_04002202.1| cold shock protein CspE [Escherichia coli 83972]
 gi|238899902|ref|YP_002925698.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
 gi|253774390|ref|YP_003037221.1| cold shock protein CspE [Escherichia coli 'BL21-Gold(DE3)pLysS
          AG']
 gi|254160706|ref|YP_003043814.1| cold shock protein CspE [Escherichia coli B str. REL606]
 gi|254791790|ref|YP_003076627.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14359]
 gi|256020576|ref|ZP_05434441.1| cold shock protein CspE [Shigella sp. D9]
 gi|256023764|ref|ZP_05437629.1| cold shock protein CspE [Escherichia sp. 4_1_40B]
 gi|260842850|ref|YP_003220628.1| DNA-binding transcriptional repressor CspE [Escherichia coli
          O103:H2 str. 12009]
 gi|260853876|ref|YP_003227767.1| DNA-binding transcriptional repressor CspE [Escherichia coli
          O26:H11 str. 11368]
 gi|260866772|ref|YP_003233174.1| DNA-binding transcriptional repressor CspE [Escherichia coli
          O111:H- str. 11128]
 gi|261224091|ref|ZP_05938372.1| cold shock protein CspE [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257785|ref|ZP_05950318.1| cold shock protein CspE [Escherichia coli O157:H7 str. FRIK966]
 gi|291281575|ref|YP_003498393.1| hypothetical protein G2583_0787 [Escherichia coli O55:H7 str.
          CB9615]
 gi|293403886|ref|ZP_06647880.1| cold shock-like protein cspE [Escherichia coli FVEC1412]
 gi|293408749|ref|ZP_06652588.1| cold shock protein cspE [Escherichia coli B354]
 gi|293413920|ref|ZP_06656569.1| cold shock-like protein cspE [Escherichia coli B185]
 gi|293418735|ref|ZP_06661170.1| cold shock protein [Escherichia coli B088]
 gi|298379662|ref|ZP_06989267.1| cold shock protein CspG [Escherichia coli FVEC1302]
 gi|300817859|ref|ZP_07098073.1| cold shock protein CspE [Escherichia coli MS 107-1]
 gi|300823062|ref|ZP_07103196.1| cold shock protein CspE [Escherichia coli MS 119-7]
 gi|300901127|ref|ZP_07119236.1| cold shock protein CspE [Escherichia coli MS 198-1]
 gi|300907798|ref|ZP_07125415.1| cold shock protein CspE [Escherichia coli MS 84-1]
 gi|300920567|ref|ZP_07136990.1| cold shock protein CspE [Escherichia coli MS 115-1]
 gi|300927278|ref|ZP_07143006.1| cold shock protein CspE [Escherichia coli MS 182-1]
 gi|300931553|ref|ZP_07146869.1| cold shock protein CspE [Escherichia coli MS 187-1]
 gi|300939622|ref|ZP_07154275.1| cold shock protein CspE [Escherichia coli MS 21-1]
 gi|300951119|ref|ZP_07164985.1| cold shock protein CspE [Escherichia coli MS 116-1]
 gi|300959188|ref|ZP_07171269.1| cold shock protein CspE [Escherichia coli MS 175-1]
 gi|300990086|ref|ZP_07179098.1| cold shock protein CspE [Escherichia coli MS 45-1]
 gi|300996792|ref|ZP_07181533.1| cold shock protein CspE [Escherichia coli MS 200-1]
 gi|301025248|ref|ZP_07188814.1| cold shock protein CspE [Escherichia coli MS 69-1]
 gi|301028903|ref|ZP_07192073.1| cold shock protein CspE [Escherichia coli MS 196-1]
 gi|301049818|ref|ZP_07196758.1| cold shock protein CspE [Escherichia coli MS 185-1]
 gi|301302102|ref|ZP_07208235.1| cold shock protein CspE [Escherichia coli MS 124-1]
 gi|301329140|ref|ZP_07222141.1| cold shock protein CspE [Escherichia coli MS 78-1]
 gi|301643967|ref|ZP_07243991.1| cold shock protein CspE [Escherichia coli MS 146-1]
 gi|306812944|ref|ZP_07447137.1| cold shock protein CspE [Escherichia coli NC101]
 gi|307137241|ref|ZP_07496597.1| cold shock protein CspE [Escherichia coli H736]
 gi|307312660|ref|ZP_07592292.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|309785945|ref|ZP_07680574.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
 gi|309795509|ref|ZP_07689926.1| cold shock protein CspE [Escherichia coli MS 145-7]
 gi|312965070|ref|ZP_07779307.1| cold shock-like protein cspI [Escherichia coli 2362-75]
 gi|312970704|ref|ZP_07784885.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|331656651|ref|ZP_08357613.1| cold shock protein [Escherichia coli TA206]
 gi|331661988|ref|ZP_08362911.1| cold shock protein [Escherichia coli TA143]
 gi|331666976|ref|ZP_08367850.1| cold shock protein [Escherichia coli TA271]
 gi|331682045|ref|ZP_08382669.1| cold shock protein [Escherichia coli H299]
 gi|71154156|sp|P0A974|CSPE_ECO57 RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|71154157|sp|P0A973|CSPE_ECOL6 RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|71154158|sp|P0A972|CSPE_ECOLI RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|71154159|sp|P0A975|CSPE_SHIFL RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|12513525|gb|AAG54958.1|AE005242_2 cold shock protein [Escherichia coli O157:H7 str. EDL933]
 gi|471099|dbj|BAA05856.1| CspE (MsmC) [Escherichia coli]
 gi|833769|gb|AAA67556.1| gicA [Escherichia coli str. K-12 substr. W3110]
 gi|1651256|dbj|BAA35266.1| DNA-binding transcriptional repressor [Escherichia coli str. K12
          substr. W3110]
 gi|1786841|gb|AAC73724.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. MG1655]
 gi|3851642|gb|AAC72388.1| unknown [Vibrio cholerae]
 gi|13360120|dbj|BAB34085.1| cold shock protein [Escherichia coli O157:H7 str. Sakai]
 gi|26986712|gb|AAN86720.1| CspE [Escherichia coli]
 gi|30040432|gb|AAP16164.1| cold shock protein [Shigella flexneri 2a str. 2457T]
 gi|56383262|gb|AAN42293.2| cold shock protein [Shigella flexneri 2a str. 301]
 gi|73854636|gb|AAZ87343.1| cold shock protein [Shigella sonnei Ss046]
 gi|81240041|gb|ABB60751.1| cold shock protein [Shigella dysenteriae Sd197]
 gi|81244481|gb|ABB65189.1| cold shock protein [Shigella boydii Sb227]
 gi|110342445|gb|ABG68682.1| cold shock-like protein CspE [Escherichia coli 536]
 gi|157065799|gb|ABV05054.1| cold shock protein CspE [Escherichia coli HS]
 gi|157079625|gb|ABV19333.1| cold shock protein CspE [Escherichia coli E24377A]
 gi|160865544|gb|ABX22167.1| hypothetical protein SARI_02304 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|169755946|gb|ACA78645.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|169888039|gb|ACB01746.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. DH10B]
 gi|169888140|gb|ACB01847.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. DH10B]
 gi|170123239|gb|EDS92170.1| cold shock protein CspE [Escherichia albertii TW07627]
 gi|170519816|gb|ACB17994.1| cold shock protein CspE [Escherichia coli SMS-3-5]
 gi|187428699|gb|ACD07973.1| cold shock protein CspE [Shigella boydii CDC 3083-94]
 gi|187769726|gb|EDU33570.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4196]
 gi|188013582|gb|EDU51704.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4113]
 gi|188488476|gb|EDU63579.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|189002843|gb|EDU71829.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4076]
 gi|189358116|gb|EDU76535.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4401]
 gi|189360875|gb|EDU79294.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4486]
 gi|189373655|gb|EDU92071.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC869]
 gi|189379324|gb|EDU97740.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC508]
 gi|190902578|gb|EDV62311.1| cold shock protein CspE [Escherichia coli B7A]
 gi|190907438|gb|EDV67035.1| cold shock protein CspE [Escherichia coli F11]
 gi|192930975|gb|EDV83579.1| cold shock protein CspE [Escherichia coli E22]
 gi|192957610|gb|EDV88055.1| cold shock protein CspE [Escherichia coli E110019]
 gi|194413950|gb|EDX30227.1| cold shock protein CspE [Escherichia coli B171]
 gi|194419083|gb|EDX35166.1| cold shock protein CspE [Shigella dysenteriae 1012]
 gi|194423694|gb|EDX39684.1| cold shock protein CspE [Escherichia coli 101-1]
 gi|208732818|gb|EDZ81506.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4045]
 gi|208737398|gb|EDZ85082.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4042]
 gi|209160592|gb|ACI38025.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4115]
 gi|209777218|gb|ACI86921.1| cold shock protein [Escherichia coli]
 gi|209777220|gb|ACI86922.1| cold shock protein [Escherichia coli]
 gi|209777222|gb|ACI86923.1| cold shock protein [Escherichia coli]
 gi|209777224|gb|ACI86924.1| cold shock protein [Escherichia coli]
 gi|209777226|gb|ACI86925.1| cold shock protein [Escherichia coli]
 gi|209911141|dbj|BAG76215.1| cold shock-like protein [Escherichia coli SE11]
 gi|215263737|emb|CAS08072.1| DNA-binding transcriptional repressor [Escherichia coli O127:H6
          str. E2348/69]
 gi|217320761|gb|EEC29185.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14588]
 gi|218350796|emb|CAU96488.1| DNA-binding transcriptional repressor [Escherichia coli 55989]
 gi|218357340|emb|CAQ89977.1| DNA-binding transcriptional repressor [Escherichia fergusonii
          ATCC 35469]
 gi|218359934|emb|CAQ97477.1| DNA-binding transcriptional repressor [Escherichia coli IAI1]
 gi|218364332|emb|CAR02005.1| DNA-binding transcriptional repressor [Escherichia coli S88]
 gi|218368982|emb|CAR16736.1| DNA-binding transcriptional repressor [Escherichia coli IAI39]
 gi|218426011|emb|CAR06828.1| DNA-binding transcriptional repressor [Escherichia coli ED1a]
 gi|218431054|emb|CAR11930.1| DNA-binding transcriptional repressor [Escherichia coli UMN026]
 gi|222032384|emb|CAP75123.1| Cold shock-like protein cspE [Escherichia coli LF82]
 gi|227838483|gb|EEJ48949.1| cold shock protein CspE [Escherichia coli 83972]
 gi|238860974|gb|ACR62972.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
 gi|242376400|emb|CAQ31099.1| transcription antiterminator and regulator of RNA stability
          [Escherichia coli BL21(DE3)]
 gi|253325434|gb|ACT30036.1| cold-shock DNA-binding domain protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253972607|gb|ACT38278.1| cold shock protein E [Escherichia coli B str. REL606]
 gi|253976801|gb|ACT42471.1| cold shock protein E [Escherichia coli BL21(DE3)]
 gi|254591190|gb|ACT70551.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7
          str. TW14359]
 gi|257752525|dbj|BAI24027.1| DNA-binding transcriptional repressor CspE [Escherichia coli
          O26:H11 str. 11368]
 gi|257757997|dbj|BAI29494.1| DNA-binding transcriptional repressor CspE [Escherichia coli
          O103:H2 str. 12009]
 gi|257763128|dbj|BAI34623.1| DNA-binding transcriptional repressor CspE [Escherichia coli
          O111:H- str. 11128]
 gi|260450208|gb|ACX40630.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|281177773|dbj|BAI54103.1| cold shock-like protein [Escherichia coli SE15]
 gi|284920424|emb|CBG33485.1| cold shock-like protein [Escherichia coli 042]
 gi|290761448|gb|ADD55409.1| hypothetical protein G2583_0787 [Escherichia coli O55:H7 str.
          CB9615]
 gi|291325263|gb|EFE64678.1| cold shock protein [Escherichia coli B088]
 gi|291428472|gb|EFF01497.1| cold shock-like protein cspE [Escherichia coli FVEC1412]
 gi|291433978|gb|EFF06951.1| cold shock-like protein cspE [Escherichia coli B185]
 gi|291471927|gb|EFF14410.1| cold shock protein cspE [Escherichia coli B354]
 gi|294494060|gb|ADE92816.1| cold shock protein CspE [Escherichia coli IHE3034]
 gi|298279360|gb|EFI20868.1| cold shock protein CspG [Escherichia coli FVEC1302]
 gi|299878114|gb|EFI86325.1| cold shock protein CspE [Escherichia coli MS 196-1]
 gi|300298413|gb|EFJ54798.1| cold shock protein CspE [Escherichia coli MS 185-1]
 gi|300304394|gb|EFJ58914.1| cold shock protein CspE [Escherichia coli MS 200-1]
 gi|300314212|gb|EFJ63996.1| cold shock protein CspE [Escherichia coli MS 175-1]
 gi|300355435|gb|EFJ71305.1| cold shock protein CspE [Escherichia coli MS 198-1]
 gi|300396117|gb|EFJ79655.1| cold shock protein CspE [Escherichia coli MS 69-1]
 gi|300400487|gb|EFJ84025.1| cold shock protein CspE [Escherichia coli MS 84-1]
 gi|300407161|gb|EFJ90699.1| cold shock protein CspE [Escherichia coli MS 45-1]
 gi|300412430|gb|EFJ95740.1| cold shock protein CspE [Escherichia coli MS 115-1]
 gi|300416766|gb|EFK00077.1| cold shock protein CspE [Escherichia coli MS 182-1]
 gi|300449605|gb|EFK13225.1| cold shock protein CspE [Escherichia coli MS 116-1]
 gi|300455497|gb|EFK18990.1| cold shock protein CspE [Escherichia coli MS 21-1]
 gi|300460695|gb|EFK24188.1| cold shock protein CspE [Escherichia coli MS 187-1]
 gi|300524411|gb|EFK45480.1| cold shock protein CspE [Escherichia coli MS 119-7]
 gi|300529556|gb|EFK50618.1| cold shock protein CspE [Escherichia coli MS 107-1]
 gi|300842654|gb|EFK70414.1| cold shock protein CspE [Escherichia coli MS 124-1]
 gi|300844528|gb|EFK72288.1| cold shock protein CspE [Escherichia coli MS 78-1]
 gi|301077663|gb|EFK92469.1| cold shock protein CspE [Escherichia coli MS 146-1]
 gi|305853707|gb|EFM54146.1| cold shock protein CspE [Escherichia coli NC101]
 gi|306907362|gb|EFN37867.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|307552494|gb|ADN45269.1| cold shock-like protein CspE [Escherichia coli ABU 83972]
 gi|307627938|gb|ADN72242.1| cold shock protein CspE [Escherichia coli UM146]
 gi|308120884|gb|EFO58146.1| cold shock protein CspE [Escherichia coli MS 145-7]
 gi|308926056|gb|EFP71534.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
 gi|309700862|emb|CBJ00159.1| cold shock-like protein [Escherichia coli ETEC H10407]
 gi|310337353|gb|EFQ02491.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|312290161|gb|EFR18044.1| cold shock-like protein cspI [Escherichia coli 2362-75]
 gi|312945171|gb|ADR25998.1| cold shock protein CspE [Escherichia coli O83:H1 str. NRG 857C]
 gi|313649731|gb|EFS14155.1| cold shock-like protein cspI [Shigella flexneri 2a str. 2457T]
 gi|315059879|gb|ADT74206.1| DNA-binding transcriptional repressor [Escherichia coli W]
 gi|315135289|dbj|BAJ42448.1| cold shock protein CspE [Escherichia coli DH1]
 gi|315255074|gb|EFU35042.1| cold shock protein CspE [Escherichia coli MS 85-1]
 gi|315287050|gb|EFU46465.1| cold shock protein CspE [Escherichia coli MS 110-3]
 gi|315292127|gb|EFU51479.1| cold shock protein CspE [Escherichia coli MS 153-1]
 gi|315299117|gb|EFU58371.1| cold shock protein CspE [Escherichia coli MS 16-3]
 gi|315616459|gb|EFU97076.1| cold shock-like protein cspI [Escherichia coli 3431]
 gi|320175134|gb|EFW50246.1| Cold shock protein CspE [Shigella dysenteriae CDC 74-1112]
 gi|320178413|gb|EFW53381.1| Cold shock protein CspE [Shigella boydii ATCC 9905]
 gi|320185402|gb|EFW60172.1| Cold shock protein CspE [Shigella flexneri CDC 796-83]
 gi|320193030|gb|EFW67670.1| Cold shock protein CspE [Escherichia coli O157:H7 str. EC1212]
 gi|320194194|gb|EFW68826.1| Cold shock protein CspE [Escherichia coli WV_060327]
 gi|320198250|gb|EFW72854.1| Cold shock protein CspE [Escherichia coli EC4100B]
 gi|320638073|gb|EFX07837.1| cold shock protein CspE [Escherichia coli O157:H7 str. G5101]
 gi|320643479|gb|EFX12649.1| cold shock protein CspE [Escherichia coli O157:H- str. 493-89]
 gi|320648814|gb|EFX17441.1| cold shock protein CspE [Escherichia coli O157:H- str. H 2687]
 gi|320654400|gb|EFX22447.1| cold shock protein CspE [Escherichia coli O55:H7 str. 3256-97 TW
          07815]
 gi|320660081|gb|EFX27611.1| cold shock protein CspE [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664878|gb|EFX32013.1| cold shock protein CspE [Escherichia coli O157:H7 str. LSU-61]
 gi|323153655|gb|EFZ39903.1| cold shock-like protein cspI [Escherichia coli EPECa14]
 gi|323158923|gb|EFZ44934.1| cold shock-like protein cspI [Escherichia coli E128010]
 gi|323164078|gb|EFZ49886.1| cold shock-like protein cspI [Shigella sonnei 53G]
 gi|323170751|gb|EFZ56401.1| cold shock-like protein cspI [Escherichia coli LT-68]
 gi|323179900|gb|EFZ65457.1| cold shock-like protein cspI [Escherichia coli 1180]
 gi|323184883|gb|EFZ70251.1| cold shock-like protein cspI [Escherichia coli 1357]
 gi|323191262|gb|EFZ76526.1| cold shock-like protein cspI [Escherichia coli RN587/1]
 gi|323379557|gb|ADX51825.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323938386|gb|EGB34640.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1520]
 gi|323943038|gb|EGB39197.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323945099|gb|EGB41161.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323952798|gb|EGB48666.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H252]
 gi|323958382|gb|EGB54088.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H263]
 gi|323963193|gb|EGB58761.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H489]
 gi|323967571|gb|EGB62987.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli M863]
 gi|323972078|gb|EGB67292.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|323976394|gb|EGB71484.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TW10509]
 gi|324006340|gb|EGB75559.1| cold shock protein CspE [Escherichia coli MS 57-2]
 gi|324010499|gb|EGB79718.1| cold shock protein CspE [Escherichia coli MS 60-1]
 gi|324016114|gb|EGB85333.1| cold shock protein CspE [Escherichia coli MS 117-3]
 gi|324114747|gb|EGC08715.1| cold-shock DNA-binding domain-containing protein [Escherichia
          fergusonii B253]
 gi|324116698|gb|EGC10613.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1167]
 gi|325498195|gb|EGC96054.1| cold shock protein CspE [Escherichia fergusonii ECD227]
 gi|326341375|gb|EGD65167.1| Cold shock protein CspE [Escherichia coli O157:H7 str. 1044]
 gi|326345847|gb|EGD69586.1| Cold shock protein CspE [Escherichia coli O157:H7 str. 1125]
 gi|327254308|gb|EGE65930.1| cold shock-like protein cspI [Escherichia coli STEC_7v]
 gi|330910385|gb|EGH38895.1| cold shock protein CspE [Escherichia coli AA86]
 gi|331054899|gb|EGI26908.1| cold shock protein [Escherichia coli TA206]
 gi|331060410|gb|EGI32374.1| cold shock protein [Escherichia coli TA143]
 gi|331066200|gb|EGI38084.1| cold shock protein [Escherichia coli TA271]
 gi|331080724|gb|EGI51898.1| cold shock protein [Escherichia coli H299]
 gi|332094296|gb|EGI99347.1| cold shock-like protein cspI [Shigella boydii 5216-82]
 gi|332096862|gb|EGJ01852.1| cold shock-like protein cspI [Shigella dysenteriae 155-74]
 gi|332341970|gb|AEE55304.1| cold shock-like protein CspI [Escherichia coli UMNK88]
 gi|332761006|gb|EGJ91294.1| cold shock-like protein cspI [Shigella flexneri 4343-70]
 gi|332761185|gb|EGJ91471.1| cold shock-like protein cspI [Shigella flexneri 2747-71]
 gi|332763377|gb|EGJ93617.1| cold shock-like protein cspI [Shigella flexneri K-671]
 gi|332768274|gb|EGJ98459.1| transcription antiterminator and regulator of RNA stability
          [Shigella flexneri 2930-71]
 gi|333007465|gb|EGK26945.1| cold shock-like protein cspI [Shigella flexneri VA-6]
 gi|333008038|gb|EGK27514.1| cold shock-like protein cspI [Shigella flexneri K-218]
 gi|333010035|gb|EGK29470.1| cold shock-like protein cspI [Shigella flexneri K-272]
 gi|333020868|gb|EGK40128.1| cold shock-like protein cspI [Shigella flexneri K-227]
 gi|333021570|gb|EGK40820.1| cold shock-like protein cspI [Shigella flexneri K-304]
          Length = 69

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++ + N A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVIAL 69


>gi|291085708|ref|ZP_06353810.2| putative cold shock protein [Citrobacter youngae ATCC 29220]
 gi|291070213|gb|EFE08322.1| putative cold shock protein [Citrobacter youngae ATCC 29220]
          Length = 100

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++ + N A G
Sbjct: 36  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 91

Query: 64  KYSAENLKL 72
             +A  + L
Sbjct: 92  PSAANVIAL 100


>gi|328880509|emb|CCA53748.1| cold shock protein [Streptomyces venezuelae ATCC 10712]
          Length = 67

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G DVF H S +A++G   L EGQ VT+D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIEQEGG---GPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|157146760|ref|YP_001454079.1| cold shock protein CspE [Citrobacter koseri ATCC BAA-895]
 gi|157083965|gb|ABV13643.1| hypothetical protein CKO_02534 [Citrobacter koseri ATCC BAA-895]
          Length = 100

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++ + N A G
Sbjct: 36  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 91

Query: 64  KYSAENLKL 72
             +A  + L
Sbjct: 92  PSAANVIAL 100


>gi|163801267|ref|ZP_02195166.1| cold-shock DNA-binding domain protein [Vibrio sp. AND4]
 gi|159174756|gb|EDP59556.1| cold-shock DNA-binding domain protein [Vibrio sp. AND4]
          Length = 70

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          GS+KW+N  KG+GFITP+     G D+F+H  ++AS G   LTEGQ V+++  Q +
Sbjct: 7  GSVKWFNESKGFGFITPD---NGGSDLFVHFKSIASEGFKTLTEGQKVSFNVEQGN 59


>gi|329888180|ref|ZP_08266778.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
          ATCC 11568]
 gi|328846736|gb|EGF96298.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
          ATCC 11568]
          Length = 67

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NP KG+GFI P+     G DVF+H +AV  AGL  L +   V Y+       GK
Sbjct: 4  GTVKWFNPTKGFGFIQPD---TGGADVFVHITAVQKAGLVGLDDNAKVEYEL--ETQRGK 58

Query: 65 YSAENLKLV 73
           SA +LKL+
Sbjct: 59 TSAVDLKLL 67


>gi|251790554|ref|YP_003005275.1| cold shock protein CspE [Dickeya zeae Ech1591]
 gi|271499690|ref|YP_003332715.1| cold-shock DNA-binding domain-containing protein [Dickeya
          dadantii Ech586]
 gi|307130032|ref|YP_003882048.1| DNA-binding transcriptional repressor [Dickeya dadantii 3937]
 gi|247539175|gb|ACT07796.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591]
 gi|270343245|gb|ACZ76010.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586]
 gi|306527561|gb|ADM97491.1| DNA-binding transcriptional repressor [Dickeya dadantii 3937]
          Length = 69

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++ + + A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITSGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|239616519|ref|YP_002939841.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
          19.5.1]
 gi|239505350|gb|ACR78837.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
          19.5.1]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFIT     + G+DVF+H S + S G   L EGQ V +D ++N   G
Sbjct: 2  KGTVKWFNAQKGYGFITR----DEGEDVFIHFSGIVSDGFKTLEEGQRVEFD-IENGQKG 56

Query: 64 KYSAENLKLVP 74
             A N+K V 
Sbjct: 57 A-QAVNVKTVE 66


>gi|329116681|ref|ZP_08245398.1| major cold shock protein CspA [Streptococcus parauberis NCFD
          2020]
 gi|326907086|gb|EGE54000.1| major cold shock protein CspA [Streptococcus parauberis NCFD
          2020]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI    STE+G DVF H SA+ S G  +L EGQ V +D V+    G
Sbjct: 3  QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQSNGFKSLDEGQKVEFD-VEEGQRG 57

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 58 PQAVNIVKL 66


>gi|30265215|ref|NP_847592.1| cold shock protein CspC [Bacillus anthracis str. Ames]
 gi|47778401|ref|YP_022086.2| cold shock protein CspC [Bacillus anthracis str. 'Ames Ancestor']
 gi|196039541|ref|ZP_03106846.1| cold shock protein CspC [Bacillus cereus NVH0597-99]
 gi|218232486|ref|YP_002369965.1| cold shock protein CspC [Bacillus cereus B4264]
 gi|218900310|ref|YP_002448721.1| cold shock protein CspC [Bacillus cereus G9842]
 gi|227817950|ref|YP_002817959.1| cold shock protein CspC [Bacillus anthracis str. CDC 684]
 gi|228911024|ref|ZP_04074832.1| hypothetical protein bthur0013_51650 [Bacillus thuringiensis IBL
          200]
 gi|228917794|ref|ZP_04081333.1| hypothetical protein bthur0012_49970 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228955435|ref|ZP_04117440.1| hypothetical protein bthur0006_47910 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228968291|ref|ZP_04129289.1| hypothetical protein bthur0004_50700 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|229050851|ref|ZP_04194403.1| hypothetical protein bcere0027_48060 [Bacillus cereus AH676]
 gi|229063847|ref|ZP_04200151.1| hypothetical protein bcere0026_49080 [Bacillus cereus AH603]
 gi|229072644|ref|ZP_04205846.1| hypothetical protein bcere0025_48050 [Bacillus cereus F65185]
 gi|229112598|ref|ZP_04242135.1| hypothetical protein bcere0018_48380 [Bacillus cereus Rock1-15]
 gi|229158754|ref|ZP_04286812.1| hypothetical protein bcere0010_49270 [Bacillus cereus ATCC 4342]
 gi|229169899|ref|ZP_04297595.1| hypothetical protein bcere0007_48390 [Bacillus cereus AH621]
 gi|229181451|ref|ZP_04308779.1| hypothetical protein bcere0005_47920 [Bacillus cereus 172560W]
 gi|254724384|ref|ZP_05186168.1| cold shock protein CspC [Bacillus anthracis str. A1055]
 gi|254735591|ref|ZP_05193298.1| cold shock protein CspC [Bacillus anthracis str. Western North
          America USA6153]
 gi|49040749|sp|P62169|CSPC_BACAN RecName: Full=Cold shock-like protein CspC
 gi|49061093|sp|P62170|CSPC_BACCE RecName: Full=Cold shock-like protein CspC
 gi|49061097|sp|P62171|CSPC_BACCR RecName: Full=Cold shock-like protein CspC
 gi|1405474|emb|CAA63609.1| CspC protein [Bacillus cereus]
 gi|30259892|gb|AAP29078.1| cold shock protein CspC [Bacillus anthracis str. Ames]
 gi|47552106|gb|AAT34561.2| cold shock protein CspC [Bacillus anthracis str. 'Ames Ancestor']
 gi|196029701|gb|EDX68303.1| cold shock protein CspC [Bacillus cereus NVH0597-99]
 gi|218160443|gb|ACK60435.1| cold shock protein CspC [Bacillus cereus B4264]
 gi|218544035|gb|ACK96429.1| cold shock protein CspC [Bacillus cereus G9842]
 gi|227003474|gb|ACP13217.1| cold shock protein CspC [Bacillus anthracis str. CDC 684]
 gi|228602026|gb|EEK59519.1| hypothetical protein bcere0005_47920 [Bacillus cereus 172560W]
 gi|228613613|gb|EEK70742.1| hypothetical protein bcere0007_48390 [Bacillus cereus AH621]
 gi|228624738|gb|EEK81507.1| hypothetical protein bcere0010_49270 [Bacillus cereus ATCC 4342]
 gi|228670978|gb|EEL26285.1| hypothetical protein bcere0018_48380 [Bacillus cereus Rock1-15]
 gi|228710620|gb|EEL62593.1| hypothetical protein bcere0025_48050 [Bacillus cereus F65185]
 gi|228716484|gb|EEL68188.1| hypothetical protein bcere0026_49080 [Bacillus cereus AH603]
 gi|228722507|gb|EEL73900.1| hypothetical protein bcere0027_48060 [Bacillus cereus AH676]
 gi|228791464|gb|EEM39068.1| hypothetical protein bthur0004_50700 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228804227|gb|EEM50841.1| hypothetical protein bthur0006_47910 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228841843|gb|EEM86951.1| hypothetical protein bthur0012_49970 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228848679|gb|EEM93525.1| hypothetical protein bthur0013_51650 [Bacillus thuringiensis IBL
          200]
          Length = 65

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E GDDVF+H SA+   G  +L EGQ V +D V + A G
Sbjct: 2  QGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|78067321|ref|YP_370090.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
          383]
 gi|107023458|ref|YP_621785.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia AU 1054]
 gi|116690540|ref|YP_836163.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia HI2424]
 gi|170733881|ref|YP_001765828.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|254247419|ref|ZP_04940740.1| Cold shock protein [Burkholderia cenocepacia PC184]
 gi|77968066|gb|ABB09446.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
 gi|105893647|gb|ABF76812.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          AU 1054]
 gi|116648629|gb|ABK09270.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          HI2424]
 gi|124872195|gb|EAY63911.1| Cold shock protein [Burkholderia cenocepacia PC184]
 gi|169817123|gb|ACA91706.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          MC0-3]
          Length = 67

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D VQ
Sbjct: 4  GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAITMNGFKTLKEGQKVSFDVVQ 54


>gi|302865133|ref|YP_003833770.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
 gi|315501633|ref|YP_004080520.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|302567992|gb|ADL44194.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
          27029]
 gi|315408252|gb|ADU06369.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
          Length = 67

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFI+P+   + G DVF H SA++++G  +L E Q V +D  Q     +
Sbjct: 4  GTVKWFNADKGFGFISPD---DGGADVFAHFSAISASGFRSLDENQKVEFDITQGQKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENIR 65


>gi|323339641|ref|ZP_08079913.1| cold-shock domain family protein [Lactobacillus ruminis ATCC
          25644]
 gi|323092937|gb|EFZ35537.1| cold-shock domain family protein [Lactobacillus ruminis ATCC
          25644]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFIT     E G DVF+H SA+   G  +L EGQ VT+D V+   
Sbjct: 1  MEQGTVKWFNAEKGYGFITR----EDGSDVFVHFSAIQGEGYKSLEEGQHVTFD-VEEGQ 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGLQAANVVK 65


>gi|227551933|ref|ZP_03981982.1| cold-shock protein [Enterococcus faecium TX1330]
 gi|257886902|ref|ZP_05666555.1| cold-shock protein [Enterococcus faecium 1,141,733]
 gi|257895473|ref|ZP_05675126.1| cold-shock protein [Enterococcus faecium Com12]
 gi|257898089|ref|ZP_05677742.1| cold-shock protein [Enterococcus faecium Com15]
 gi|293378339|ref|ZP_06624508.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
 gi|293568617|ref|ZP_06679932.1| cold-shock protein [Enterococcus faecium E1071]
 gi|227178934|gb|EEI59906.1| cold-shock protein [Enterococcus faecium TX1330]
 gi|257822956|gb|EEV49888.1| cold-shock protein [Enterococcus faecium 1,141,733]
 gi|257832038|gb|EEV58459.1| cold-shock protein [Enterococcus faecium Com12]
 gi|257836001|gb|EEV61075.1| cold-shock protein [Enterococcus faecium Com15]
 gi|291588577|gb|EFF20410.1| cold-shock protein [Enterococcus faecium E1071]
 gi|292643203|gb|EFF61344.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N +KG+GFIT E    +G+DVF+H SA+   G   L EGQ VT+D
Sbjct: 1  METGTVKWFNSEKGFGFITAE----NGNDVFVHFSAIQGDGFKTLEEGQTVTFD 50


>gi|226311237|ref|YP_002771131.1| cold shock protein [Brevibacillus brevis NBRC 100599]
 gi|226094185|dbj|BAH42627.1| cold shock protein [Brevibacillus brevis NBRC 100599]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KG+GFI  +G    GDDVF+H SA+   G  +L EGQ V +D V+N  
Sbjct: 1  MERGRVKWFNSEKGFGFIERDG----GDDVFVHFSAIQGEGYKSLDEGQEVEFD-VENGQ 55

Query: 62 NGKYSAENLKL 72
           G  +    KL
Sbjct: 56 RGPQATNVRKL 66


>gi|260597574|ref|YP_003210145.1| Cold shock-like protein cspB [Cronobacter turicensis z3032]
 gi|260216751|emb|CBA30171.1| Cold shock-like protein cspB [Cronobacter turicensis z3032]
          Length = 70

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 6/74 (8%)

Query: 1  MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M +R  GS+KW+N DKG+GFI P   T+   DVF+H SA+ S     LTEGQ V +  V+
Sbjct: 1  MANRMNGSVKWFNADKGFGFIAP---TDGSKDVFVHFSAIQSDNFRTLTEGQQVEFS-VE 56

Query: 59 NDANGKYSAENLKL 72
          N A G  +   + L
Sbjct: 57 NGAKGPSAVNVVAL 70


>gi|257868635|ref|ZP_05648288.1| DNA-binding cold-shock protein [Enterococcus gallinarum EG2]
 gi|257802799|gb|EEV31621.1| DNA-binding cold-shock protein [Enterococcus gallinarum EG2]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+   G   L EGQ VT+D
Sbjct: 1  MNNGTVKWFNADKGFGFITG----EDGNDVFAHFSAIQGDGFKTLDEGQAVTFD 50


>gi|302878597|ref|YP_003847161.1| cold-shock DNA-binding domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302581386|gb|ADL55397.1| cold-shock DNA-binding domain protein [Gallionella
          capsiferriformans ES-2]
          Length = 68

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI+P+   + GDD+F H SA+  +G  +L EGQ +++D  Q      
Sbjct: 4  GTVKWFNDEKGFGFISPD---DGGDDLFAHFSAINISGFKSLKEGQKISFDVAQGPKG-- 58

Query: 65 YSAENLKLV 73
            A N+++V
Sbjct: 59 RQASNIQIV 67


>gi|15890768|ref|NP_356440.1| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|15159048|gb|AAK89225.1| cold shock protein [Agrobacterium tumefaciens str. C58]
          Length = 76

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++  DKG+GFITP+     G DVF+H SAV   G  +L +GQ V+Y+  Q+   GK
Sbjct: 13 GTVKFFAQDKGFGFITPD---NGGPDVFVHISAVGFGG--SLQDGQKVSYELGQDRKTGK 67

Query: 65 YSAENLKLV 73
            AEN+ L+
Sbjct: 68 SKAENVTLL 76


>gi|294500562|ref|YP_003564262.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295705915|ref|YP_003598990.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294350499|gb|ADE70828.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294803574|gb|ADF40640.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KW+N +KG+GFI  EG    G+DVF+H SA+   G  +L EGQ VT+D  Q
Sbjct: 3  EGTVKWFNAEKGFGFIEIEG----GEDVFVHFSAIQGDGFKSLDEGQKVTFDIEQ 53


>gi|255264493|ref|ZP_05343835.1| conserved domain protein [Thalassiobium sp. R2A62]
 gi|255106828|gb|EET49502.1| conserved domain protein [Thalassiobium sp. R2A62]
          Length = 69

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+G ++   DVF+H SAV  +GL  L + Q V +D ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPDGGSK---DVFVHISAVERSGLTGLADNQKVNFD-IEAGRDGR 59

Query: 65 YSAENL 70
           SA N+
Sbjct: 60 ESAINI 65


>gi|83951672|ref|ZP_00960404.1| cold shock family protein [Roseovarius nubinhibens ISM]
 gi|83836678|gb|EAP75975.1| cold shock family protein [Roseovarius nubinhibens ISM]
          Length = 68

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H SAV  +GL  L + Q V Y+ +Q+  +G+
Sbjct: 4  GTVKWFNTTKGYGFIAPD---DGGKDVFVHISAVERSGLTGLADEQKVGYE-LQDGRDGR 59

Query: 65 YSAENLKLV 73
            A +L L+
Sbjct: 60 QMASDLTLL 68


>gi|284031585|ref|YP_003381516.1| cold-shock DNA-binding domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283810878|gb|ADB32717.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM
          17836]
          Length = 67

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFITP+   + G DVF H SA+ ++G  +L E Q V ++  Q      
Sbjct: 4  GTVKWFNADKGFGFITPD---DGGADVFAHYSAIQTSGFRSLDENQRVEFEITQGQKG-- 58

Query: 65 YSAENLKLV 73
            AEN++ +
Sbjct: 59 LQAENIRPI 67


>gi|206561070|ref|YP_002231835.1| cold shock-like protein [Burkholderia cenocepacia J2315]
 gi|198037112|emb|CAR53033.1| cold shock-like protein [Burkholderia cenocepacia J2315]
          Length = 67

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D VQ    GK
Sbjct: 4  GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAITMNGFKTLKEGQKVSFDVVQG-PKGK 59

Query: 65 YSAENLKLV 73
            A N++ V
Sbjct: 60 -QASNIQAV 67


>gi|315642390|ref|ZP_07896985.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
 gi|315482298|gb|EFU72851.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
          Length = 96

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +++G++KW+N +KG+GFIT E    +G DVF H SA+ + G  +L EGQ VT+D
Sbjct: 31 MNKGTVKWFNAEKGFGFITGE----NGQDVFAHFSAIQADGFKSLDEGQAVTFD 80


>gi|302533879|ref|ZP_07286221.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302442774|gb|EFL14590.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 67

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   LTEGQ VT+D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIATQGFRELTEGQRVTFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|157374396|ref|YP_001472996.1| putative cold shock-like protein [Shewanella sediminis HAW-EB3]
 gi|157316770|gb|ABV35868.1| putative Cold shock-like protein [Shewanella sediminis HAW-EB3]
          Length = 70

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI+ E     GDDVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 7  GTVKWFNEEKGFGFISQE---NGGDDVFVHFRAIASDGFKTLAEGQKVSFEVEQ 57


>gi|159036600|ref|YP_001535853.1| cold-shock DNA-binding domain-containing protein [Salinispora
          arenicola CNS-205]
 gi|157915435|gb|ABV96862.1| cold-shock DNA-binding domain protein [Salinispora arenicola
          CNS-205]
          Length = 67

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFI+P+G    G DVF H SA++++G  +L E Q V ++  Q     +
Sbjct: 4  GTVKWFNADKGFGFISPDG---GGADVFAHFSAISASGFRSLDENQKVEFEITQGQKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENIR 65


>gi|69247317|ref|ZP_00604299.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
 gi|257879979|ref|ZP_05659632.1| cold-shock protein [Enterococcus faecium 1,230,933]
 gi|257883090|ref|ZP_05662743.1| cold-shock protein [Enterococcus faecium 1,231,502]
 gi|257884117|ref|ZP_05663770.1| cold-shock protein [Enterococcus faecium 1,231,501]
 gi|257890488|ref|ZP_05670141.1| cold-shock protein [Enterococcus faecium 1,231,410]
 gi|257894415|ref|ZP_05674068.1| cold-shock protein [Enterococcus faecium 1,231,408]
 gi|258614362|ref|ZP_05712132.1| cold-shock domain-contain protein [Enterococcus faecium DO]
 gi|260558929|ref|ZP_05831116.1| cold-shock protein [Enterococcus faecium C68]
 gi|261209452|ref|ZP_05923815.1| cold-shock protein [Enterococcus faecium TC 6]
 gi|289567727|ref|ZP_06448016.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
 gi|293553822|ref|ZP_06674437.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293559767|ref|ZP_06676287.1| cold shock protein [Enterococcus faecium E1162]
 gi|293571661|ref|ZP_06682682.1| cold-shock protein [Enterococcus faecium E980]
 gi|294616363|ref|ZP_06696156.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294619946|ref|ZP_06699319.1| cold shock protein [Enterococcus faecium E1679]
 gi|294622017|ref|ZP_06701160.1| cold shock protein [Enterococcus faecium U0317]
 gi|314940163|ref|ZP_07847341.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|314942420|ref|ZP_07849263.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|314950182|ref|ZP_07853467.1| major cold shock protein CspA [Enterococcus faecium TX0082]
 gi|314952304|ref|ZP_07855315.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|314994253|ref|ZP_07859556.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|314997168|ref|ZP_07862154.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|68194887|gb|EAN09358.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
 gi|257814207|gb|EEV42965.1| cold-shock protein [Enterococcus faecium 1,230,933]
 gi|257818748|gb|EEV46076.1| cold-shock protein [Enterococcus faecium 1,231,502]
 gi|257819955|gb|EEV47103.1| cold-shock protein [Enterococcus faecium 1,231,501]
 gi|257826848|gb|EEV53474.1| cold-shock protein [Enterococcus faecium 1,231,410]
 gi|257830794|gb|EEV57401.1| cold-shock protein [Enterococcus faecium 1,231,408]
 gi|260075037|gb|EEW63352.1| cold-shock protein [Enterococcus faecium C68]
 gi|260076580|gb|EEW64344.1| cold-shock protein [Enterococcus faecium TC 6]
 gi|289160477|gb|EFD08488.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
 gi|291590877|gb|EFF22593.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291593803|gb|EFF25304.1| cold shock protein [Enterococcus faecium E1679]
 gi|291598407|gb|EFF29481.1| cold shock protein [Enterococcus faecium U0317]
 gi|291602028|gb|EFF32265.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291606250|gb|EFF35664.1| cold shock protein [Enterococcus faecium E1162]
 gi|291608331|gb|EFF37632.1| cold-shock protein [Enterococcus faecium E980]
 gi|313588742|gb|EFR67587.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|313591340|gb|EFR70185.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|313595563|gb|EFR74408.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|313598820|gb|EFR77665.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|313640602|gb|EFS05182.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|313643492|gb|EFS08072.1| major cold shock protein CspA [Enterococcus faecium TX0082]
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N +KG+GFIT E    +G+DVF+H SA+   G   L EGQ VT+D
Sbjct: 1  METGTVKWFNSEKGFGFITAE----NGNDVFVHFSAIQGDGFKTLEEGQAVTFD 50


>gi|330447209|ref|ZP_08310859.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491400|dbj|GAA05356.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
          Length = 71

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V++D  Q
Sbjct: 8  GSVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQ 58


>gi|294499936|ref|YP_003563636.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295705319|ref|YP_003598394.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294349873|gb|ADE70202.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294802978|gb|ADF40044.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 65

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ VT++ V+ +
Sbjct: 3  QGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQEVTFEIVEGN 55


>gi|126699599|ref|YP_001088496.1| cold shock protein [Clostridium difficile 630]
 gi|254975590|ref|ZP_05272062.1| cold shock protein [Clostridium difficile QCD-66c26]
 gi|255092978|ref|ZP_05322456.1| cold shock protein [Clostridium difficile CIP 107932]
 gi|255101124|ref|ZP_05330101.1| cold shock protein [Clostridium difficile QCD-63q42]
 gi|255306991|ref|ZP_05351162.1| cold shock protein [Clostridium difficile ATCC 43255]
 gi|255314719|ref|ZP_05356302.1| cold shock protein [Clostridium difficile QCD-76w55]
 gi|255517393|ref|ZP_05385069.1| cold shock protein [Clostridium difficile QCD-97b34]
 gi|255650500|ref|ZP_05397402.1| cold shock protein [Clostridium difficile QCD-37x79]
 gi|260683608|ref|YP_003214893.1| cold shock protein [Clostridium difficile CD196]
 gi|260687268|ref|YP_003218402.1| cold shock protein [Clostridium difficile R20291]
 gi|306520461|ref|ZP_07406808.1| cold shock protein [Clostridium difficile QCD-32g58]
 gi|115251036|emb|CAJ68867.1| Major cold shock protein CspC [Clostridium difficile]
 gi|260209771|emb|CBA63577.1| cold shock protein [Clostridium difficile CD196]
 gi|260213285|emb|CBE04832.1| cold shock protein [Clostridium difficile R20291]
          Length = 66

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFI+ EG     DDVF H SA+ ++G  +L EGQ V++D V+  A
Sbjct: 1  MNNGIVKWFNNEKGFGFISMEGR----DDVFAHFSAIQTSGFKSLEEGQQVSFDIVKG-A 55

Query: 62 NGKYSAENLKLV 73
           G   AEN+ ++
Sbjct: 56 RGP-QAENITIL 66


>gi|13625473|gb|AAK35071.1|AF363392_1 cold acclimation protein CapB [Pseudomonas sp. 30/3]
          Length = 69

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFITP    +SGDD+F+H  A+ S G  +L EGQ V+  ++       
Sbjct: 7  GTVKWFNDEKGFGFITP----QSGDDLFVHFKAIPSDGFKSLKEGQQVS--FIATRGQKG 60

Query: 65 YSAENLKLV 73
            AE ++++
Sbjct: 61 MQAEEVQVI 69


>gi|29375934|ref|NP_815088.1| cold-shock domain-contain protein [Enterococcus faecalis V583]
 gi|227518631|ref|ZP_03948680.1| cold-shock protein [Enterococcus faecalis TX0104]
 gi|227553162|ref|ZP_03983211.1| cold-shock protein [Enterococcus faecalis HH22]
 gi|229545951|ref|ZP_04434676.1| cold-shock protein [Enterococcus faecalis TX1322]
 gi|229550143|ref|ZP_04438868.1| cold-shock protein [Enterococcus faecalis ATCC 29200]
 gi|255972920|ref|ZP_05423506.1| cold-shock protein [Enterococcus faecalis T1]
 gi|255975974|ref|ZP_05426560.1| cold-shock protein [Enterococcus faecalis T2]
 gi|256618947|ref|ZP_05475793.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
 gi|256762374|ref|ZP_05502954.1| cold-shock protein [Enterococcus faecalis T3]
 gi|256853004|ref|ZP_05558374.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
 gi|256958857|ref|ZP_05563028.1| cold-shock protein [Enterococcus faecalis DS5]
 gi|256962049|ref|ZP_05566220.1| cold-shock protein [Enterococcus faecalis Merz96]
 gi|256965247|ref|ZP_05569418.1| cold-shock protein [Enterococcus faecalis HIP11704]
 gi|257078889|ref|ZP_05573250.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|257082664|ref|ZP_05577025.1| cold-shock domain-containing protein [Enterococcus faecalis
          E1Sol]
 gi|257085373|ref|ZP_05579734.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|257086868|ref|ZP_05581229.1| cold-shock protein [Enterococcus faecalis D6]
 gi|257089761|ref|ZP_05584122.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257415977|ref|ZP_05592971.1| cold-shock protein [Enterococcus faecalis AR01/DG]
 gi|257419179|ref|ZP_05596173.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257422743|ref|ZP_05599733.1| cold shock protein [Enterococcus faecalis X98]
 gi|293383071|ref|ZP_06628989.1| conserved domain protein [Enterococcus faecalis R712]
 gi|293387776|ref|ZP_06632320.1| conserved domain protein [Enterococcus faecalis S613]
 gi|294779559|ref|ZP_06744953.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          PC1.1]
 gi|300860884|ref|ZP_07106971.1| cold shock protein CspB [Enterococcus faecalis TUSoD Ef11]
 gi|307271144|ref|ZP_07552427.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|307273351|ref|ZP_07554596.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|307277496|ref|ZP_07558588.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|307279174|ref|ZP_07560232.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
 gi|307288138|ref|ZP_07568148.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
 gi|307291351|ref|ZP_07571235.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|312900628|ref|ZP_07759925.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
 gi|312904110|ref|ZP_07763278.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|312907339|ref|ZP_07766330.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
 gi|312909956|ref|ZP_07768804.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
 gi|312952370|ref|ZP_07771245.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|29343396|gb|AAO81158.1| cold-shock domain family protein [Enterococcus faecalis V583]
 gi|227073926|gb|EEI11889.1| cold-shock protein [Enterococcus faecalis TX0104]
 gi|227177688|gb|EEI58660.1| cold-shock protein [Enterococcus faecalis HH22]
 gi|229304729|gb|EEN70725.1| cold-shock protein [Enterococcus faecalis ATCC 29200]
 gi|229308914|gb|EEN74901.1| cold-shock protein [Enterococcus faecalis TX1322]
 gi|255963938|gb|EET96414.1| cold-shock protein [Enterococcus faecalis T1]
 gi|255968846|gb|EET99468.1| cold-shock protein [Enterococcus faecalis T2]
 gi|256598474|gb|EEU17650.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
 gi|256683625|gb|EEU23320.1| cold-shock protein [Enterococcus faecalis T3]
 gi|256711463|gb|EEU26501.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
 gi|256949353|gb|EEU65985.1| cold-shock protein [Enterococcus faecalis DS5]
 gi|256952545|gb|EEU69177.1| cold-shock protein [Enterococcus faecalis Merz96]
 gi|256955743|gb|EEU72375.1| cold-shock protein [Enterococcus faecalis HIP11704]
 gi|256986919|gb|EEU74221.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|256990694|gb|EEU77996.1| cold-shock domain-containing protein [Enterococcus faecalis
          E1Sol]
 gi|256993403|gb|EEU80705.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|256994898|gb|EEU82200.1| cold-shock protein [Enterococcus faecalis D6]
 gi|256998573|gb|EEU85093.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257157805|gb|EEU87765.1| cold-shock protein [Enterococcus faecalis ARO1/DG]
 gi|257161007|gb|EEU90967.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257164567|gb|EEU94527.1| cold shock protein [Enterococcus faecalis X98]
 gi|291079736|gb|EFE17100.1| conserved domain protein [Enterococcus faecalis R712]
 gi|291082846|gb|EFE19809.1| conserved domain protein [Enterococcus faecalis S613]
 gi|294453349|gb|EFG21757.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          PC1.1]
 gi|295112888|emb|CBL31525.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76]
 gi|300849923|gb|EFK77673.1| cold shock protein CspB [Enterococcus faecalis TUSoD Ef11]
 gi|306497582|gb|EFM67115.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|306500874|gb|EFM70192.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
 gi|306504299|gb|EFM73511.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
 gi|306505761|gb|EFM74939.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|306509878|gb|EFM78903.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|306512642|gb|EFM81291.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|310626367|gb|EFQ09650.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
 gi|310629754|gb|EFQ13037.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|310632586|gb|EFQ15869.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|311289914|gb|EFQ68470.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
 gi|311292109|gb|EFQ70665.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
 gi|315027392|gb|EFT39324.1| major cold shock protein CspA [Enterococcus faecalis TX2137]
 gi|315030013|gb|EFT41945.1| major cold shock protein CspA [Enterococcus faecalis TX4000]
 gi|315033768|gb|EFT45700.1| major cold shock protein CspA [Enterococcus faecalis TX0017]
 gi|315036854|gb|EFT48786.1| major cold shock protein CspA [Enterococcus faecalis TX0027]
 gi|315145675|gb|EFT89691.1| major cold shock protein CspA [Enterococcus faecalis TX2141]
 gi|315147863|gb|EFT91879.1| major cold shock protein CspA [Enterococcus faecalis TX4244]
 gi|315150659|gb|EFT94675.1| major cold shock protein CspA [Enterococcus faecalis TX0012]
 gi|315153333|gb|EFT97349.1| major cold shock protein CspA [Enterococcus faecalis TX0031]
 gi|315155889|gb|EFT99905.1| major cold shock protein CspA [Enterococcus faecalis TX0043]
 gi|315157943|gb|EFU01960.1| major cold shock protein CspA [Enterococcus faecalis TX0312]
 gi|315160238|gb|EFU04255.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
 gi|315164246|gb|EFU08263.1| major cold shock protein CspA [Enterococcus faecalis TX1302]
 gi|315166660|gb|EFU10677.1| major cold shock protein CspA [Enterococcus faecalis TX1341]
 gi|315170056|gb|EFU14073.1| major cold shock protein CspA [Enterococcus faecalis TX1342]
 gi|315174446|gb|EFU18463.1| major cold shock protein CspA [Enterococcus faecalis TX1346]
 gi|315575578|gb|EFU87769.1| major cold shock protein CspA [Enterococcus faecalis TX0309B]
 gi|315578455|gb|EFU90646.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
 gi|315579980|gb|EFU92171.1| major cold shock protein CspA [Enterococcus faecalis TX0309A]
 gi|323480602|gb|ADX80041.1| Major cold shock protein, CspB [Enterococcus faecalis 62]
 gi|327535008|gb|AEA93842.1| cold shock protein CspA [Enterococcus faecalis OG1RF]
 gi|329571445|gb|EGG53132.1| major cold shock protein CspA [Enterococcus faecalis TX1467]
          Length = 66

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N DKG+GFIT     E+G+DVF+H SA+   G   L EGQ VT++
Sbjct: 1  METGTVKWFNSDKGFGFITA----ENGNDVFVHFSAIQGDGFKTLEEGQAVTFE 50


>gi|15616172|ref|NP_244477.1| cold-shock protein [Bacillus halodurans C-125]
 gi|10176234|dbj|BAB07329.1| cold-shock protein [Bacillus halodurans C-125]
          Length = 65

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E GDDVF+H SA+ + G   L EGQ V +D V+  A G
Sbjct: 2  QGKVKWFNAEKGFGFI----EREDGDDVFVHFSAINTDGFKTLDEGQSVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 57 PQAANVTKL 65


>gi|218512700|ref|ZP_03509540.1| cold-shock DNA-binding domain protein [Rhizobium etli 8C-3]
          Length = 92

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI P+     G D+F+H SAV ++GL  LTE Q V++D  + D
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPD---RGGADIFVHISAVQASGLAGLTENQNVSFD-TEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 RRGK 60


>gi|319653577|ref|ZP_08007676.1| cold-shock domain family protein [Bacillus sp. 2_A_57_CT2]
 gi|317394776|gb|EFV75515.1| cold-shock domain family protein [Bacillus sp. 2_A_57_CT2]
          Length = 66

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G +KW+N +KG+GFI  EG    G+DVF+H SA+   G  +L EGQ VT+D  Q
Sbjct: 1  MENGKVKWFNSEKGFGFIEREG----GEDVFVHFSAIQGEGYKSLEEGQEVTFDVEQ 53


>gi|302382206|ref|YP_003818029.1| cold-shock DNA-binding domain protein [Brevundimonas
          subvibrioides ATCC 15264]
 gi|302192834|gb|ADL00406.1| cold-shock DNA-binding domain protein [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 67

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NP KG+GFI P+     G DVF+H +AV  AGL  L E   V Y+       GK
Sbjct: 4  GTVKWFNPTKGFGFIQPD---SGGADVFVHITAVQKAGLTGLDENAKVEYEL--ESQRGK 58

Query: 65 YSAENLKLV 73
           SA +LK++
Sbjct: 59 TSAIDLKVL 67


>gi|78043760|ref|YP_359027.1| cold shock protein CspC [Carboxydothermus hydrogenoformans
          Z-2901]
 gi|77995875|gb|ABB14774.1| cold shock protein CspC [Carboxydothermus hydrogenoformans
          Z-2901]
          Length = 65

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KGYGFI      E G DVF+H SA+   G   L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFDPKKGYGFI----EREDGGDVFVHFSAIQEKGFKTLEEGQRVEFEIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|77458156|ref|YP_347661.1| cold-shock DNA-binding protein family protein [Pseudomonas
          fluorescens Pf0-1]
 gi|77382159|gb|ABA73672.1| major cold shock protein [Pseudomonas fluorescens Pf0-1]
          Length = 70

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N +KG+GFITP+G    GDD+F+H  A+ + G  +L EGQ V++
Sbjct: 7  GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIETDGFKSLKEGQTVSF 53


>gi|304403836|ref|ZP_07385498.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304346814|gb|EFM12646.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 65

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI      E+G+DVF+H SA+   G   L EGQ V +D + +   G
Sbjct: 2  KGTVKWFNAEKGYGFI----QVENGEDVFVHFSAITGEGFKTLEEGQAVEFD-ITDGNRG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|85860247|ref|YP_462449.1| cold shock protein [Syntrophus aciditrophicus SB]
 gi|85723338|gb|ABC78281.1| cold shock protein [Syntrophus aciditrophicus SB]
          Length = 67

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G++KW+N  KG+GFI    + +SG+DVF+H SA+   G   L E + V++D VQ  
Sbjct: 1  MMPEGTVKWFNDSKGFGFI----AQDSGNDVFVHYSAIQGTGFKTLAESERVSFDVVQG- 55

Query: 61 ANGKYSAENLK 71
          A G  SAEN++
Sbjct: 56 AKGP-SAENVR 65


>gi|295698317|ref|YP_003602972.1| hypothetical protein RIEPE_0091 [Candidatus Riesia pediculicola
          USDA]
 gi|291157076|gb|ADD79521.1| conserved domain protein [Candidatus Riesia pediculicola USDA]
          Length = 69

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 7/70 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFI+PE  ++   DVF+H +++ S G   LTEGQ V +D     ANG
Sbjct: 5  KGSVKWFNEAKGFGFISPEDGSK---DVFVHFTSIQSEGFKTLTEGQKVEFDV----ANG 57

Query: 64 KYSAENLKLV 73
          +     + +V
Sbjct: 58 EKGPSAINVV 67


>gi|254752895|ref|ZP_05204931.1| cold shock protein CspB [Bacillus anthracis str. Vollum]
 gi|254759167|ref|ZP_05211193.1| cold shock protein CspB [Bacillus anthracis str. Australia 94]
          Length = 66

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ VT++  Q +
Sbjct: 1  MQNGKVKWFNSEKGFGFIEVEG----GEDVFVHXSAIQGEGFKTLEEGQEVTFEVEQGN 55


>gi|29377389|ref|NP_816543.1| cold-shock domain-contain protein [Enterococcus faecalis V583]
 gi|227518209|ref|ZP_03948258.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis TX0104]
 gi|227554372|ref|ZP_03984419.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis HH22]
 gi|229547598|ref|ZP_04436323.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis TX1322]
 gi|229548194|ref|ZP_04436919.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis ATCC 29200]
 gi|255970846|ref|ZP_05421432.1| cold-shock protein [Enterococcus faecalis T1]
 gi|255974421|ref|ZP_05425007.1| cold-shock domain-containing protein [Enterococcus faecalis T2]
 gi|256618291|ref|ZP_05475137.1| cold-shock DNA-binding protein [Enterococcus faecalis ATCC 4200]
 gi|256761221|ref|ZP_05501801.1| cold-shock DNA-binding protein family [Enterococcus faecalis T3]
 gi|256852484|ref|ZP_05557860.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
 gi|256958160|ref|ZP_05562331.1| cold-shock DNA-binding protein [Enterococcus faecalis DS5]
 gi|256960306|ref|ZP_05564477.1| cold-shock DNA-binding protein [Enterococcus faecalis Merz96]
 gi|256962742|ref|ZP_05566913.1| cold-shock DNA-binding protein [Enterococcus faecalis HIP11704]
 gi|257077433|ref|ZP_05571794.1| cold-shock DNA-binding protein [Enterococcus faecalis JH1]
 gi|257080702|ref|ZP_05575063.1| cold-shock DNA-binding family protein [Enterococcus faecalis
          E1Sol]
 gi|257083376|ref|ZP_05577737.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|257088066|ref|ZP_05582427.1| cold-shock DNA-binding protein family [Enterococcus faecalis D6]
 gi|257091145|ref|ZP_05585506.1| cold-shock DNA-binding protein [Enterococcus faecalis CH188]
 gi|257417092|ref|ZP_05594086.1| cold-shock DNA-binding protein [Enterococcus faecalis AR01/DG]
 gi|257417806|ref|ZP_05594800.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257420576|ref|ZP_05597566.1| cold shock protein [Enterococcus faecalis X98]
 gi|293382174|ref|ZP_06628117.1| conserved domain protein [Enterococcus faecalis R712]
 gi|293388515|ref|ZP_06633019.1| conserved domain protein [Enterococcus faecalis S613]
 gi|294779646|ref|ZP_06745037.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          PC1.1]
 gi|300860161|ref|ZP_07106248.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
 gi|307268850|ref|ZP_07550217.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|307272662|ref|ZP_07553910.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|307275091|ref|ZP_07556245.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|307278556|ref|ZP_07559628.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
 gi|307287380|ref|ZP_07567439.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
 gi|307290818|ref|ZP_07570712.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|312900401|ref|ZP_07759711.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
 gi|312902908|ref|ZP_07762105.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|312905731|ref|ZP_07764753.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
 gi|312909074|ref|ZP_07767934.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
 gi|312952213|ref|ZP_07771091.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|29344856|gb|AAO82613.1| cold-shock domain family protein [Enterococcus faecalis V583]
 gi|227074365|gb|EEI12328.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis TX0104]
 gi|227176491|gb|EEI57463.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis HH22]
 gi|229306673|gb|EEN72669.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis ATCC 29200]
 gi|229307288|gb|EEN73275.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis TX1322]
 gi|255961864|gb|EET94340.1| cold-shock protein [Enterococcus faecalis T1]
 gi|255967293|gb|EET97915.1| cold-shock domain-containing protein [Enterococcus faecalis T2]
 gi|256597818|gb|EEU16994.1| cold-shock DNA-binding protein [Enterococcus faecalis ATCC 4200]
 gi|256682472|gb|EEU22167.1| cold-shock DNA-binding protein family [Enterococcus faecalis T3]
 gi|256712338|gb|EEU27370.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
 gi|256948656|gb|EEU65288.1| cold-shock DNA-binding protein [Enterococcus faecalis DS5]
 gi|256950802|gb|EEU67434.1| cold-shock DNA-binding protein [Enterococcus faecalis Merz96]
 gi|256953238|gb|EEU69870.1| cold-shock DNA-binding protein [Enterococcus faecalis HIP11704]
 gi|256985463|gb|EEU72765.1| cold-shock DNA-binding protein [Enterococcus faecalis JH1]
 gi|256988732|gb|EEU76034.1| cold-shock DNA-binding family protein [Enterococcus faecalis
          E1Sol]
 gi|256991406|gb|EEU78708.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|256996096|gb|EEU83398.1| cold-shock DNA-binding protein family [Enterococcus faecalis D6]
 gi|256999957|gb|EEU86477.1| cold-shock DNA-binding protein [Enterococcus faecalis CH188]
 gi|257158920|gb|EEU88880.1| cold-shock DNA-binding protein [Enterococcus faecalis ARO1/DG]
 gi|257159634|gb|EEU89594.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257162400|gb|EEU92360.1| cold shock protein [Enterococcus faecalis X98]
 gi|291080457|gb|EFE17821.1| conserved domain protein [Enterococcus faecalis R712]
 gi|291082119|gb|EFE19082.1| conserved domain protein [Enterococcus faecalis S613]
 gi|294453303|gb|EFG21714.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          PC1.1]
 gi|295114296|emb|CBL32933.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76]
 gi|300849200|gb|EFK76950.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
 gi|306498127|gb|EFM67650.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|306501553|gb|EFM70849.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
 gi|306504793|gb|EFM73991.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
 gi|306508209|gb|EFM77325.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|306510657|gb|EFM79679.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|306514854|gb|EFM83402.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|310628210|gb|EFQ11493.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
 gi|310629869|gb|EFQ13152.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|310633680|gb|EFQ16963.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|311290636|gb|EFQ69192.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
 gi|311292491|gb|EFQ71047.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
 gi|315028141|gb|EFT40073.1| major cold shock protein CspA [Enterococcus faecalis TX2137]
 gi|315030878|gb|EFT42810.1| major cold shock protein CspA [Enterococcus faecalis TX4000]
 gi|315032295|gb|EFT44227.1| major cold shock protein CspA [Enterococcus faecalis TX0017]
 gi|315036226|gb|EFT48158.1| major cold shock protein CspA [Enterococcus faecalis TX0027]
 gi|315145411|gb|EFT89427.1| major cold shock protein CspA [Enterococcus faecalis TX2141]
 gi|315148797|gb|EFT92813.1| major cold shock protein CspA [Enterococcus faecalis TX4244]
 gi|315151664|gb|EFT95680.1| major cold shock protein CspA [Enterococcus faecalis TX0012]
 gi|315154536|gb|EFT98552.1| major cold shock protein CspA [Enterococcus faecalis TX0031]
 gi|315156405|gb|EFU00422.1| major cold shock protein CspA [Enterococcus faecalis TX0043]
 gi|315160103|gb|EFU04120.1| major cold shock protein CspA [Enterococcus faecalis TX0312]
 gi|315163277|gb|EFU07294.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
 gi|315165918|gb|EFU09935.1| major cold shock protein CspA [Enterococcus faecalis TX1302]
 gi|315169325|gb|EFU13342.1| major cold shock protein CspA [Enterococcus faecalis TX1341]
 gi|315171820|gb|EFU15837.1| major cold shock protein CspA [Enterococcus faecalis TX1342]
 gi|315174742|gb|EFU18759.1| major cold shock protein CspA [Enterococcus faecalis TX1346]
 gi|315576277|gb|EFU88468.1| major cold shock protein CspA [Enterococcus faecalis TX0309B]
 gi|315578917|gb|EFU91108.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
 gi|315582769|gb|EFU94960.1| major cold shock protein CspA [Enterococcus faecalis TX0309A]
 gi|323478890|gb|ADX78329.1| cold shock protein cspC [Enterococcus faecalis 62]
 gi|327536078|gb|AEA94912.1| cold shock protein CspA [Enterococcus faecalis OG1RF]
 gi|329573421|gb|EGG55031.1| major cold shock protein CspA [Enterococcus faecalis TX1467]
          Length = 66

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KG+GFI    S E G DVF+H SA+   G   L EGQ VT+D   +D
Sbjct: 1  MEQGTVKWFNAEKGFGFI----SREDGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSD 55


>gi|15892944|ref|NP_360658.1| cold shock-like protein [Rickettsia conorii str. Malish 7]
 gi|34581356|ref|ZP_00142836.1| cold shock-like protein [Rickettsia sibirica 246]
 gi|157828875|ref|YP_001495117.1| cold shock-like protein [Rickettsia rickettsii str. 'Sheila
          Smith']
 gi|165933601|ref|YP_001650390.1| cold shock protein [Rickettsia rickettsii str. Iowa]
 gi|229587023|ref|YP_002845524.1| Cold shock-like protein [Rickettsia africae ESF-5]
 gi|238650987|ref|YP_002916843.1| cold shock protein [Rickettsia peacockii str. Rustic]
 gi|22256739|sp|Q92GV1|CSPA_RICCN RecName: Full=Cold shock-like protein CspA
 gi|15620137|gb|AAL03559.1| cold shock-like protein [Rickettsia conorii str. Malish 7]
 gi|28262741|gb|EAA26245.1| cold shock-like protein [Rickettsia sibirica 246]
 gi|157801356|gb|ABV76609.1| cold shock-like protein [Rickettsia rickettsii str. 'Sheila
          Smith']
 gi|165908688|gb|ABY72984.1| cold shock protein [Rickettsia rickettsii str. Iowa]
 gi|228022073|gb|ACP53781.1| Cold shock-like protein [Rickettsia africae ESF-5]
 gi|238625085|gb|ACR47791.1| cold shock protein [Rickettsia peacockii str. Rustic]
          Length = 70

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  +     G DVF+H+SAV +AGL +L EGQ V +D    +  GK
Sbjct: 7  GKVKWYNSTKNFGFIEQD---NGGKDVFVHKSAVDAAGLHSLEEGQDVIFDL--EEKQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAVNLRI 69


>gi|70731986|ref|YP_261728.1| temperature acclimation protein b, fragment-like protein
          [Pseudomonas fluorescens Pf-5]
 gi|68346285|gb|AAY93891.1| temperature acclimation protein b [Pseudomonas fluorescens Pf-5]
          Length = 70

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQ 56


>gi|154244150|ref|YP_001415108.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154158235|gb|ABS65451.1| putative cold-shock DNA-binding domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 241

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 35/48 (72%), Gaps = 3/48 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           G++KWYNPDKG+GFI  EG    G DVF+H + ++ +GL +L EGQ V
Sbjct: 177 GTVKWYNPDKGFGFIAVEG---GGKDVFVHVTVISRSGLTDLAEGQRV 221



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 3/38 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42
            ++KW+NP+KG+GF+  E +  SG DVFLH  A+ +AG
Sbjct: 67  ATVKWFNPEKGFGFV--ELADGSG-DVFLHARALEAAG 101


>gi|116669342|ref|YP_830275.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
          FB24]
 gi|116609451|gb|ABK02175.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
          Length = 67

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFIT +G   SGDDVF+H SA+   G   L EGQ V ++  + +   +
Sbjct: 4  GTVKWFNAEKGYGFITVDG---SGDDVFVHWSAIEREGYRALDEGQRVQFEVGEGEKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENVR 65


>gi|297744636|emb|CBI37898.3| unnamed protein product [Vitis vinifera]
          Length = 236

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + GDD+F+H+S++ S G  +L EG+ V +  V++  +G+
Sbjct: 6  GTVKWFNDQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDGR 61

Query: 65 YSA 67
            A
Sbjct: 62 TKA 64


>gi|253995969|ref|YP_003048033.1| cold-shock DNA-binding domain-containing protein [Methylotenera
          mobilis JLW8]
 gi|253982648|gb|ACT47506.1| cold-shock DNA-binding domain protein [Methylotenera mobilis
          JLW8]
          Length = 67

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + GDD+F H SA+  +G  +L EGQ V++D  +
Sbjct: 4  GTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVESGYKSLKEGQRVSFDLTE 54


>gi|257867783|ref|ZP_05647436.1| cold-shock protein [Enterococcus casseliflavus EC30]
 gi|257874110|ref|ZP_05653763.1| cold-shock protein [Enterococcus casseliflavus EC10]
 gi|257876671|ref|ZP_05656324.1| cold-shock protein [Enterococcus casseliflavus EC20]
 gi|325571022|ref|ZP_08146594.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
 gi|257801866|gb|EEV30769.1| cold-shock protein [Enterococcus casseliflavus EC30]
 gi|257808274|gb|EEV37096.1| cold-shock protein [Enterococcus casseliflavus EC10]
 gi|257810837|gb|EEV39657.1| cold-shock protein [Enterococcus casseliflavus EC20]
 gi|325156107|gb|EGC68293.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
          Length = 66

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFIT +G    GDDVF+H SA+   G  +L EGQ V +  V+  A
Sbjct: 1  MEHGKVKWFNNEKGFGFITVDG----GDDVFVHFSAIQGDGFKSLEEGQEVEFTIVEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +AE  K+
Sbjct: 56 RGPQAAEVTKV 66


>gi|228993896|ref|ZP_04153799.1| hypothetical protein bpmyx0001_46190 [Bacillus pseudomycoides DSM
          12442]
 gi|228999933|ref|ZP_04159505.1| hypothetical protein bmyco0003_44860 [Bacillus mycoides Rock3-17]
 gi|229007485|ref|ZP_04165082.1| hypothetical protein bmyco0002_43640 [Bacillus mycoides Rock1-4]
 gi|229087667|ref|ZP_04219793.1| hypothetical protein bcere0022_42280 [Bacillus cereus Rock3-44]
 gi|229164128|ref|ZP_04292064.1| hypothetical protein bcere0009_48900 [Bacillus cereus R309803]
 gi|228619364|gb|EEK76254.1| hypothetical protein bcere0009_48900 [Bacillus cereus R309803]
 gi|228695628|gb|EEL48487.1| hypothetical protein bcere0022_42280 [Bacillus cereus Rock3-44]
 gi|228753873|gb|EEM03314.1| hypothetical protein bmyco0002_43640 [Bacillus mycoides Rock1-4]
 gi|228759875|gb|EEM08849.1| hypothetical protein bmyco0003_44860 [Bacillus mycoides Rock3-17]
 gi|228765847|gb|EEM14498.1| hypothetical protein bpmyx0001_46190 [Bacillus pseudomycoides DSM
          12442]
          Length = 65

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E GDDVF+H SA+   G  +L EGQ V +D V + A G
Sbjct: 2  QGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQKVEFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|168334103|ref|ZP_02692316.1| cold shock protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 65

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+NP+KG+GFI      E GDDVF+H +A+ S G   L EGQ V ++  +
Sbjct: 3  GKVKWFNPEKGFGFI----EREDGDDVFVHFTAIQSEGFKTLEEGQEVEFEITE 52


>gi|56964834|ref|YP_176565.1| cold shock protein CspC [Bacillus clausii KSM-K16]
 gi|56911077|dbj|BAD65604.1| cold shock protein CspC [Bacillus clausii KSM-K16]
          Length = 65

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E GDDVF+H SA+ S G   L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFNAEKGFGFI----EREDGDDVFVHFSAINSDGFKTLDEGQDVEFEIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|326489997|dbj|BAJ94072.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 85

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+  ++   DVF+H SA++ AG   L EGQ V + Y+Q+   G 
Sbjct: 8  GVVKWFNESKGFGFITPDDGSK---DVFVHFSAISGAGFKTLAEGQRVEF-YIQDGQKGP 63

Query: 65 YSAENLKL 72
           + + + L
Sbjct: 64 SAVDVMAL 71


>gi|315639698|ref|ZP_07894837.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
 gi|315484475|gb|EFU74932.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
          Length = 66

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N +KG+GFIT E     G+DVF+H SA+   G   L EGQ VT+D
Sbjct: 1  MNNGTVKWFNSEKGFGFITAE----DGNDVFVHFSAIQGDGFKTLEEGQAVTFD 50


>gi|303239877|ref|ZP_07326400.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
          CD2]
 gi|302592587|gb|EFL62312.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
          CD2]
          Length = 65

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N +KG+GFI  EG    GDDVF+H SA+ S G  +L EGQ V +D
Sbjct: 3  GKVKWFNAEKGFGFIEREG----GDDVFVHFSAIQSQGYKSLDEGQRVEFD 49


>gi|50120233|ref|YP_049400.1| cold shock protein CspE [Pectobacterium atrosepticum SCRI1043]
 gi|227114408|ref|ZP_03828064.1| cold shock protein CspE [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
 gi|227329730|ref|ZP_03833754.1| cold shock protein CspE [Pectobacterium carotovorum subsp.
          carotovorum WPP14]
 gi|253687566|ref|YP_003016756.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|261822402|ref|YP_003260508.1| cold shock protein CspE [Pectobacterium wasabiae WPP163]
 gi|49610759|emb|CAG74204.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043]
 gi|251754144|gb|ACT12220.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|261606415|gb|ACX88901.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
          Length = 69

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE  ++   DVF+H SA+ S G   L EGQ V ++ + + A G
Sbjct: 5  KGSVKWFNESKGFGFITPEDGSK---DVFVHFSAIQSNGFKTLAEGQRVEFE-ITDGAKG 60

Query: 64 KYSA 67
            +A
Sbjct: 61 PSAA 64


>gi|294497748|ref|YP_003561448.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295703123|ref|YP_003596198.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294347685|gb|ADE68014.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294800782|gb|ADF37848.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 65

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG     DDVF+H SA+   G  +L EGQ VT++ +++ A G
Sbjct: 3  QGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKSLEEGQEVTFE-IEDGARG 57

Query: 64 KYSA 67
            +A
Sbjct: 58 PQAA 61


>gi|262278327|ref|ZP_06056112.1| cold shock protein [Acinetobacter calcoaceticus RUH2202]
 gi|299769266|ref|YP_003731292.1| cold shock protein [Acinetobacter sp. DR1]
 gi|262258678|gb|EEY77411.1| cold shock protein [Acinetobacter calcoaceticus RUH2202]
 gi|298699354|gb|ADI89919.1| cold shock protein [Acinetobacter sp. DR1]
          Length = 71

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KG+GFI P    ESG DVF H S +A++G   L EGQ V +   Q
Sbjct: 6  IMKGTVKWFNEAKGFGFIQP----ESGPDVFAHFSEIANSGFRTLAEGQRVEFSVAQ 58


>gi|239627019|ref|ZP_04670050.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          bacterium 1_7_47_FAA]
 gi|239517165|gb|EEQ57031.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          bacterium 1_7_47FAA]
          Length = 67

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 41/54 (75%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +++G++KW+N  KG+GFIT   + E+G+D+F+H S +A+ G  +L +GQ VT+D
Sbjct: 1  MNKGTVKWFNSQKGFGFIT---NAENGEDIFVHFSGIATDGFKSLDDGQSVTFD 51


>gi|226495947|ref|NP_001141714.1| hypothetical protein LOC100273843 [Zea mays]
 gi|194705650|gb|ACF86909.1| unknown [Zea mays]
          Length = 303

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
            RG++KW+N  KG+GFI+PE  +E   D+F+H+S++ S G  +L EG+ V +   + D
Sbjct: 61  QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD 115


>gi|229542762|ref|ZP_04431822.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
 gi|229327182|gb|EEN92857.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
          Length = 66

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N +KG+GFI   G    GDDVF+H SA+   G   L EGQ VT+D  Q
Sbjct: 1  MEQGTVKWFNGEKGFGFIERNG----GDDVFVHFSAIQGEGFKTLDEGQKVTFDVEQ 53


>gi|326789294|ref|YP_004307115.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
 gi|326540058|gb|ADZ81917.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
          Length = 65

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI+ EG    GDDVF+H SA+   G  +L EGQ V +D  +
Sbjct: 3  GTVKWFNAEKGFGFISREG----GDDVFVHFSAIQGDGFKSLEEGQAVNFDITK 52


>gi|262371507|ref|ZP_06064821.1| cold shock protein [Acinetobacter johnsonii SH046]
 gi|294648334|ref|ZP_06725843.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194]
 gi|262313558|gb|EEY94611.1| cold shock protein [Acinetobacter johnsonii SH046]
 gi|292825776|gb|EFF84470.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194]
          Length = 71

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          V +G++KW+N  KG+GFI      ESG DVF H S +AS+G   L EGQ+V +   Q
Sbjct: 6  VVKGTVKWFNETKGFGFI----QQESGPDVFAHFSEIASSGFKTLMEGQMVEFSVAQ 58


>gi|253998300|ref|YP_003050363.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. SIP3-4]
 gi|255599837|ref|XP_002537322.1| cold shock domain containing proteins, putative [Ricinus
          communis]
 gi|313200374|ref|YP_004039032.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. MP688]
 gi|223516741|gb|EEF25061.1| cold shock domain containing proteins, putative [Ricinus
          communis]
 gi|253984979|gb|ACT49836.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4]
 gi|312439690|gb|ADQ83796.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688]
          Length = 67

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + GDD+F H SA+  +G  +L EGQ V++D  +
Sbjct: 4  GTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVESGYKSLKEGQRVSFDVTE 54


>gi|116510999|ref|YP_808215.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
          subsp. cremoris SK11]
 gi|125623057|ref|YP_001031540.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|3892590|emb|CAA76698.1| cold shock protein E [Lactococcus lactis subsp. cremoris MG1363]
 gi|116106653|gb|ABJ71793.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
          cremoris SK11]
 gi|124491865|emb|CAL96786.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|300069804|gb|ADJ59204.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris
          NZ9000]
          Length = 65

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N  KG+GFIT    TE G+DVF H SA+ + G   L EGQ VT+D
Sbjct: 3  QGTVKWFNATKGFGFIT----TEEGNDVFAHFSAIQTDGFKTLDEGQKVTFD 50


>gi|163785452|ref|ZP_02180056.1| cold-shock DNA-binding domain protein [Hydrogenivirga sp.
          128-5-R1-1]
 gi|159879278|gb|EDP73178.1| cold-shock DNA-binding domain protein [Hydrogenivirga sp.
          128-5-R1-1]
          Length = 69

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 3/60 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW++  KG+GFIT E   ++G+D+F+H SA+   G  NL EG+ V ++ VQ++
Sbjct: 1  MSTTGTVKWFDSKKGFGFITRE---DTGEDIFVHFSAINGQGFKNLEEGEKVEFEVVQDE 57


>gi|289678192|ref|ZP_06499082.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae FF5]
 gi|330899515|gb|EGH30934.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          japonica str. M301072PT]
 gi|330938935|gb|EGH42434.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi
          str. 1704B]
 gi|330982632|gb|EGH80735.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 70

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQ 56


>gi|90420715|ref|ZP_01228621.1| cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90335006|gb|EAS48767.1| cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 70

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI+P+     G DVF+H S+V  +G+ +LTE Q V++D  + D
Sbjct: 1  MAQTGTVKFFNMDKGFGFISPDAG---GSDVFVHISSVERSGMTSLTENQKVSFD-TEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 PRGK 60


>gi|312962742|ref|ZP_07777231.1| temperature acclimation protein b [Pseudomonas fluorescens WH6]
 gi|330811374|ref|YP_004355836.1| transcription factor, Csd family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|311283117|gb|EFQ61709.1| temperature acclimation protein b [Pseudomonas fluorescens WH6]
 gi|327379482|gb|AEA70832.1| Putative transcription factor, Csd family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 70

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56


>gi|220931393|ref|YP_002508301.1| putative cold-shock DNA-binding domain protein [Halothermothrix
          orenii H 168]
 gi|219992703|gb|ACL69306.1| putative cold-shock DNA-binding domain protein [Halothermothrix
          orenii H 168]
          Length = 68

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +++ G +KW++  KG+GFI      E+GDDVF+H SA+   G  +L EGQ V ++ VQ D
Sbjct: 2  IIYNGKVKWFSDKKGFGFI----EREAGDDVFVHFSAIQKEGFKSLDEGQEVEFEVVQGD 57


>gi|222086573|ref|YP_002545107.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221724021|gb|ACM27177.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 71

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI P+   + G D+F+H SAV ++GL  L+E Q V++D  + D
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPD---KGGADIFVHISAVQASGLAGLSENQKVSFD-TEPD 56

Query: 61 ANGK-YSAENLKL 72
            GK   A NL++
Sbjct: 57 RRGKGPKAVNLQI 69


>gi|16974809|pdb|1I5F|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
 gi|16974810|pdb|1I5F|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
          Length = 66

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI  EG    G DVF+H +A+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQEGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|2493773|sp|P72192|TAPB_PSEFR RecName: Full=Temperature acclimation protein B; AltName:
          Full=E8.0
 gi|1513086|gb|AAC46000.1| temperature acclimation protein B [Pseudomonas fragi]
          Length = 63

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQ 56


>gi|163941513|ref|YP_001646397.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|163863710|gb|ABY44769.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
          Length = 66

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N DKG+GFI  EG    G+DVF+H SA+   G  +L EGQ VT++  Q
Sbjct: 1  MEQGKVKWFNADKGFGFIEREG----GEDVFVHFSAIQIDGFKSLDEGQSVTFEVEQ 53


>gi|307332024|ref|ZP_07611115.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306882305|gb|EFN13400.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 69

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI     +E G DVF+H SA+ S G   L EG+ VT++ VQ    G 
Sbjct: 4  GTVKWFNAEKGFGFIA---QSEGGPDVFVHYSAINSRGFRELNEGERVTFE-VQQGQKGP 59

Query: 65 YSAENLKLVP 74
           +A   + +P
Sbjct: 60 QAANVERALP 69


>gi|325920664|ref|ZP_08182574.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
          19865]
 gi|325548854|gb|EGD19798.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
          19865]
          Length = 68

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N  KG+GFI+PE   +   DVF H SA+ S G  +L EGQ V+YD  Q
Sbjct: 1  MQNGTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVSYDVTQ 54


>gi|186475334|ref|YP_001856804.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184191793|gb|ACC69758.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 68

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++ VQ
Sbjct: 4  GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVSFEVVQ 54


>gi|149182243|ref|ZP_01860723.1| cold-shock domain family protein [Bacillus sp. SG-1]
 gi|148850012|gb|EDL64182.1| cold-shock domain family protein [Bacillus sp. SG-1]
          Length = 66

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G +KW+N +KG+GFI  EG    GDDVF+H SA+   G  +L EGQ VT+D
Sbjct: 1  MEHGKVKWFNSEKGFGFIEREG----GDDVFVHFSAIQGEGYKSLDEGQEVTFD 50


>gi|66044345|ref|YP_234186.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|302188384|ref|ZP_07265057.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae 642]
 gi|63255052|gb|AAY36148.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|330950944|gb|EGH51204.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7]
 gi|330969232|gb|EGH69298.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 70

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56


>gi|77460616|ref|YP_350123.1| cold-shock DNA-binding protein [Pseudomonas fluorescens Pf0-1]
 gi|77384619|gb|ABA76132.1| major cold shock protein [Pseudomonas fluorescens Pf0-1]
          Length = 70

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56


>gi|15604514|ref|NP_221032.1| cold shock-like protein (cspA) [Rickettsia prowazekii str. Madrid
          E]
 gi|6225211|sp|Q9ZCP9|CSPA_RICPR RecName: Full=Cold shock-like protein CspA
 gi|3861208|emb|CAA15108.1| COLD SHOCK-LIKE PROTEIN (cspA) [Rickettsia prowazekii]
 gi|292572298|gb|ADE30213.1| Cold shock-like protein [Rickettsia prowazekii Rp22]
          Length = 70

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  +     G DVF+H+SA+ +AGL +L EGQ V +D    +  GK
Sbjct: 7  GKVKWYNSTKNFGFIEQDNG---GKDVFVHKSAIDAAGLHSLEEGQEVIFDI--EEKQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAVNLRV 69


>gi|119358122|ref|YP_912766.1| cold-shock DNA-binding protein family protein [Chlorobium
          phaeobacteroides DSM 266]
 gi|119355471|gb|ABL66342.1| cold-shock DNA-binding protein family [Chlorobium
          phaeobacteroides DSM 266]
          Length = 70

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KGYGFI    + + G DVF+H SA+  +G  +LTEGQ V  + VQ  A G
Sbjct: 6  EGTVKWFNEEKGYGFI----AQKEGKDVFVHHSAIKGSGRKSLTEGQKVLMEVVQG-AKG 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -LQAENV 66


>gi|221195898|ref|ZP_03568948.1| conserved domain protein [Atopobium rimae ATCC 49626]
 gi|221184232|gb|EEE16629.1| conserved domain protein [Atopobium rimae ATCC 49626]
          Length = 67

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+NP+KGYGFI    S E GDD+F+H S +   G   L EGQ V ++ +    NG
Sbjct: 3  QGTVKWFNPEKGYGFI----SREDGDDLFVHYSEIEMDGYKTLDEGQPVEFE-ITTGQNG 57

Query: 64 KYSAENLKLV 73
          K  A ++  +
Sbjct: 58 KLQASSVHKI 67


>gi|15672150|ref|NP_266324.1| cold shock protein E [Lactococcus lactis subsp. lactis Il1403]
 gi|281490655|ref|YP_003352635.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|12723019|gb|AAK04266.1|AE006254_7 cold shock protein E [Lactococcus lactis subsp. lactis Il1403]
 gi|281374424|gb|ADA63945.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|326405743|gb|ADZ62814.1| cold shock protein [Lactococcus lactis subsp. lactis CV56]
          Length = 65

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N  KG+GFIT    TE G+DVF H SA+ + G   L EGQ VT+D
Sbjct: 3  QGTVKWFNATKGFGFIT----TEEGNDVFAHFSAIQTDGFKTLDEGQKVTFD 50


>gi|330873092|gb|EGH07241.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 70

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 6/60 (10%)

Query: 1  MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M  R  G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 1  MAERQSGTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQ 56


>gi|330948982|gb|EGH49242.1| cold shock protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 54

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N +KG+GFITP    +SGDD+F+H  A+ S G  +L EGQ V++
Sbjct: 9  GTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSF 54


>gi|229592287|ref|YP_002874406.1| major cold shock protein [Pseudomonas fluorescens SBW25]
 gi|229364153|emb|CAY51796.1| major cold shock protein [Pseudomonas fluorescens SBW25]
          Length = 70

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56


>gi|78188197|ref|YP_378535.1| cold-shock DNA-binding domain-containing protein [Chlorobium
          chlorochromatii CaD3]
 gi|78170396|gb|ABB27492.1| cold-shock DNA-binding protein family [Chlorobium chlorochromatii
          CaD3]
          Length = 69

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N +KGYGFI  +G    G DVF+H SA+  +G   L EGQ VT + VQ +
Sbjct: 5  EGTVKWFNEEKGYGFIEQQG----GKDVFVHYSAINGSGRKTLVEGQKVTMEVVQGE 57


>gi|313890412|ref|ZP_07824043.1| cold shock protein CspA [Streptococcus pseudoporcinus SPIN 20026]
 gi|332523883|ref|ZP_08400135.1| cold shock protein CspA [Streptococcus porcinus str. Jelinkova
          176]
 gi|313121255|gb|EFR44363.1| cold shock protein CspA [Streptococcus pseudoporcinus SPIN 20026]
 gi|332315147|gb|EGJ28132.1| cold shock protein CspA [Streptococcus porcinus str. Jelinkova
          176]
          Length = 67

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI    STE G DVF H SA+ S G   L EGQ V +D
Sbjct: 3  QGTVKWFNAEKGFGFI----STEEGQDVFAHFSAIQSDGFKTLDEGQKVEFD 50


>gi|304438239|ref|ZP_07398181.1| cold shock protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368846|gb|EFM22529.1| cold shock protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 72

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++ DKGYGFI    S E GDDVF+H S++   G   L+EGQ V +D V+
Sbjct: 9  GKVKWFSADKGYGFI----SREDGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVE 58


>gi|319938152|ref|ZP_08012550.1| cold shock DNA-binding protein [Coprobacillus sp. 29_1]
 gi|319806673|gb|EFW03322.1| cold shock DNA-binding protein [Coprobacillus sp. 29_1]
          Length = 68

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+  DKG+GFIT EG  +   DVF+H SA+ + G   L EGQ V +D V+ D
Sbjct: 4  GKVKWFKSDKGFGFITLEGENK---DVFVHFSAINTDGFKTLEEGQTVEFDIVEGD 56


>gi|237799875|ref|ZP_04588336.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. oryzae
          str. 1_6]
 gi|331022730|gb|EGI02787.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. oryzae
          str. 1_6]
          Length = 70

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 6/60 (10%)

Query: 1  MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M  R  G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 1  MAERQSGTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56


>gi|16974807|pdb|1HZC|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
 gi|16974808|pdb|1HZC|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
          Length = 66

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KGYGFI  EG    G DVF+H +A+   G   L EGQ V+++ VQ +
Sbjct: 1  MQEGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQAVSFEIVQGN 55


>gi|115522947|ref|YP_779858.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisA53]
 gi|115516894|gb|ABJ04878.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisA53]
          Length = 70

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +L EGQ ++++ V+ D
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLIEGQRISFE-VEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KKGK 60


>gi|284009245|emb|CBA76349.1| cold shock protein [Arsenophonus nasoniae]
          Length = 70

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N  KG+GFITPE  ++   DVF+H +A+ S G   L EGQ V +D  + +
Sbjct: 6  KGNVKWFNEAKGFGFITPEDGSK---DVFVHFTAIKSEGFKTLAEGQKVEFDITEGE 59


>gi|297197159|ref|ZP_06914556.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|197716555|gb|EDY60589.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
          Length = 67

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  EG    G DVF H S +A+ G   L EGQ V +D  Q     
Sbjct: 3  KGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIAAQGFRELQEGQKVEFDVTQGQKGP 59

Query: 64 KYSAENLK 71
          +  AEN++
Sbjct: 60 Q--AENIR 65


>gi|251798553|ref|YP_003013284.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
 gi|247546179|gb|ACT03198.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
          Length = 66

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI      E+GDDVF+H SA+ S G  +L EGQ V ++ V+
Sbjct: 4  GTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSEGFKSLDEGQRVEFNVVK 53


>gi|227499116|ref|ZP_03929251.1| cold-shock DNA-binding protein [Acidaminococcus sp. D21]
 gi|284047580|ref|YP_003397919.1| cold-shock DNA-binding domain protein [Acidaminococcus fermentans
          DSM 20731]
 gi|226904563|gb|EEH90481.1| cold-shock DNA-binding protein [Acidaminococcus sp. D21]
 gi|283951801|gb|ADB46604.1| cold-shock DNA-binding domain protein [Acidaminococcus fermentans
          DSM 20731]
          Length = 65

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI      E G DVF+H SA+   G   L EGQ V +D V+ +  G+
Sbjct: 3  GKVKWFNAEKGYGFI----EREDGGDVFVHFSAIQGEGFKTLEEGQAVEFDVVEGN-RGE 57

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 58 QAANVVKL 65


>gi|90422418|ref|YP_530788.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisB18]
 gi|90104432|gb|ABD86469.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB18]
          Length = 70

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +L EGQ ++++ V+ D
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLIEGQRISFE-VEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KKGK 60


>gi|254386942|ref|ZP_05002225.1| cold-shock domain containing protein [Streptomyces sp. Mg1]
 gi|194345770|gb|EDX26736.1| cold-shock domain containing protein [Streptomyces sp. Mg1]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G DVF H S +A+ G   L EGQ VT+D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQEGG---GPDVFAHYSNIAAQGFRELLEGQKVTFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|119961765|ref|YP_946790.1| cold shock protein [Arthrobacter aurescens TC1]
 gi|119948624|gb|ABM07535.1| putative cold shock protein [Arthrobacter aurescens TC1]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 36/51 (70%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N +KGYGFIT +   ESGDDVF+H SA+   G   L EGQ V ++
Sbjct: 4  GTVKWFNAEKGYGFITVD---ESGDDVFVHWSAIQMDGFRALEEGQRVEFE 51


>gi|86360861|ref|YP_472748.1| putative cold shock protein [Rhizobium etli CFN 42]
 gi|86284963|gb|ABC94021.1| putative cold shock protein [Rhizobium etli CFN 42]
          Length = 69

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ ++ EGQ + +    +  +GK
Sbjct: 4  GTVKWFNSTKGFGFIQPD---DGSADVFVHISAVERAGMSSIAEGQKLGFQLEHDRKSGK 60

Query: 65 YSAENLK 71
           SA  L+
Sbjct: 61 MSAGQLQ 67


>gi|312880250|ref|ZP_07740050.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM
          12260]
 gi|310783541|gb|EFQ23939.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM
          12260]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M   G++KW+N  KGYGFIT    TE G DVF+H SA+   G   L EGQ V+++  Q
Sbjct: 1  MKTNGTVKWFNATKGYGFIT----TEDGKDVFVHFSAIQGDGFKTLDEGQRVSFEVTQ 54


>gi|28868485|ref|NP_791104.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|28851723|gb|AAO54799.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|331015230|gb|EGH95286.1| cold shock domain family protein [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 70

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQ 56


>gi|71735994|ref|YP_273427.1| cold shock domain-contain protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|257487383|ref|ZP_05641424.1| cold shock domain-contain protein [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|289623813|ref|ZP_06456767.1| cold shock domain-contain protein [Pseudomonas syringae pv.
          aesculi str. NCPPB3681]
 gi|289649164|ref|ZP_06480507.1| cold shock domain-contain protein [Pseudomonas syringae pv.
          aesculi str. 2250]
 gi|298485821|ref|ZP_07003899.1| Cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB
          3335]
 gi|71556547|gb|AAZ35758.1| cold shock domain family protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|298159645|gb|EFI00688.1| Cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB
          3335]
 gi|320322886|gb|EFW78977.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320329805|gb|EFW85793.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330867848|gb|EGH02557.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          aesculi str. 0893_23]
 gi|330989711|gb|EGH87814.1| cold shock domain-contain protein [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 70

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56


>gi|293375456|ref|ZP_06621737.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
          PC909]
 gi|325836869|ref|ZP_08166275.1| cold shock-like protein CspG [Turicibacter sp. HGF1]
 gi|292646009|gb|EFF64038.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
          PC909]
 gi|325491115|gb|EGC93406.1| cold shock-like protein CspG [Turicibacter sp. HGF1]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFIT     E+G DVF+H SA+ + G   L EGQ VT++
Sbjct: 2  KGTVKWFNEEKGFGFITA----ENGSDVFVHFSAIKADGFKRLEEGQKVTFE 49


>gi|262200536|ref|YP_003271744.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
 gi|262083883|gb|ACY19851.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
          Length = 79

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI P+   + G DVF+H SA+  +G  NL E Q V +D V+  A G
Sbjct: 15 QGTVKWFNGEKGFGFIAPD---DQGADVFVHFSAIQGSGFRNLEEAQRVEFD-VEQGAKG 70

Query: 64 KYSAENLKLV 73
             A N+ ++
Sbjct: 71 -LQATNVSVI 79


>gi|297563005|ref|YP_003681979.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296847453|gb|ADH69473.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI  EG      DVF+H SA++  G  NL E Q VT+D +Q
Sbjct: 3  QGTVKWFNSEKGFGFIAVEGGQP---DVFVHYSAISGTGFRNLEEDQKVTFDIIQ 54


>gi|330962175|gb|EGH62435.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 70

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 6/60 (10%)

Query: 1  MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M  R  G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 1  MAERQSGTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVSVQ 56


>gi|15675836|ref|NP_270010.1| putative cold shock protein [Streptococcus pyogenes M1 GAS]
 gi|19746951|ref|NP_608087.1| cold shock protein [Streptococcus pyogenes MGAS8232]
 gi|21911305|ref|NP_665573.1| putative cold-shock protein [Streptococcus pyogenes MGAS315]
 gi|61221535|sp|P0A360|CSPA_STRP3 RecName: Full=Major cold shock protein
 gi|61221536|sp|P0A361|CSPA_STRP8 RecName: Full=Major cold shock protein
 gi|81175243|sp|P0C0F1|CSPA_STRP1 RecName: Full=Major cold shock protein
 gi|13623066|gb|AAK34731.1| putative cold shock protein [Streptococcus pyogenes M1 GAS]
 gi|19749202|gb|AAL98586.1| putative cold shock protein [Streptococcus pyogenes MGAS8232]
 gi|21905519|gb|AAM80376.1| putative cold-shock protein [Streptococcus pyogenes MGAS315]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI    STE+G DVF H SA+ + G   L EGQ V +D
Sbjct: 3  QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVAFD 50


>gi|69244300|ref|ZP_00602768.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
 gi|227551568|ref|ZP_03981617.1| cold-shock protein [Enterococcus faecium TX1330]
 gi|257878362|ref|ZP_05658015.1| cold-shock protein [Enterococcus faecium 1,230,933]
 gi|257887333|ref|ZP_05666986.1| cold-shock protein [Enterococcus faecium 1,141,733]
 gi|257889438|ref|ZP_05669091.1| cold-shock protein [Enterococcus faecium 1,231,410]
 gi|257892619|ref|ZP_05672272.1| cold-shock protein [Enterococcus faecium 1,231,408]
 gi|257895824|ref|ZP_05675477.1| cold-shock protein [Enterococcus faecium Com12]
 gi|257898451|ref|ZP_05678104.1| cold-shock protein [Enterococcus faecium Com15]
 gi|258616116|ref|ZP_05713886.1| cold shock protein CspA family protein [Enterococcus faecium DO]
 gi|260559947|ref|ZP_05832126.1| cold-shock protein [Enterococcus faecium C68]
 gi|293377552|ref|ZP_06623744.1| cold-shock DNA-binding domain protein [Enterococcus faecium
          PC4.1]
 gi|293553922|ref|ZP_06674527.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293560530|ref|ZP_06677020.1| cold-shock protein [Enterococcus faecium E1162]
 gi|293568855|ref|ZP_06680168.1| cold-shock protein [Enterococcus faecium E1071]
 gi|293572948|ref|ZP_06683895.1| cold-shock protein [Enterococcus faecium E980]
 gi|294615473|ref|ZP_06695341.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294618750|ref|ZP_06698279.1| cold shock protein [Enterococcus faecium E1679]
 gi|294621893|ref|ZP_06701048.1| cold shock protein [Enterococcus faecium U0317]
 gi|314940515|ref|ZP_07847657.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|314943280|ref|ZP_07850062.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|314948444|ref|ZP_07851829.1| major cold shock protein CspA [Enterococcus faecium TX0082]
 gi|314952991|ref|ZP_07855953.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|314994198|ref|ZP_07859503.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|314997118|ref|ZP_07862106.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|68196486|gb|EAN10913.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
 gi|227179245|gb|EEI60217.1| cold-shock protein [Enterococcus faecium TX1330]
 gi|257812590|gb|EEV41348.1| cold-shock protein [Enterococcus faecium 1,230,933]
 gi|257823387|gb|EEV50319.1| cold-shock protein [Enterococcus faecium 1,141,733]
 gi|257825798|gb|EEV52424.1| cold-shock protein [Enterococcus faecium 1,231,410]
 gi|257828998|gb|EEV55605.1| cold-shock protein [Enterococcus faecium 1,231,408]
 gi|257832389|gb|EEV58810.1| cold-shock protein [Enterococcus faecium Com12]
 gi|257836363|gb|EEV61437.1| cold-shock protein [Enterococcus faecium Com15]
 gi|260074171|gb|EEW62494.1| cold-shock protein [Enterococcus faecium C68]
 gi|291588288|gb|EFF20123.1| cold-shock protein [Enterococcus faecium E1071]
 gi|291591676|gb|EFF23317.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291595003|gb|EFF26351.1| cold shock protein [Enterococcus faecium E1679]
 gi|291598552|gb|EFF29614.1| cold shock protein [Enterococcus faecium U0317]
 gi|291601910|gb|EFF32157.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291605497|gb|EFF34941.1| cold-shock protein [Enterococcus faecium E1162]
 gi|291606989|gb|EFF36364.1| cold-shock protein [Enterococcus faecium E980]
 gi|292643809|gb|EFF61927.1| cold-shock DNA-binding domain protein [Enterococcus faecium
          PC4.1]
 gi|313588788|gb|EFR67633.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|313591379|gb|EFR70224.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|313594927|gb|EFR73772.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|313598008|gb|EFR76853.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|313640286|gb|EFS04867.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|313645102|gb|EFS09682.1| major cold shock protein CspA [Enterococcus faecium TX0082]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+   G   L EGQ V+YD
Sbjct: 1  MNNGTVKWFNADKGFGFITG----EDGNDVFAHFSAIQGDGFKTLEEGQAVSYD 50


>gi|289434645|ref|YP_003464517.1| cold-shock domain protein [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|289170889|emb|CBH27431.1| cold-shock domain protein [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N +KG+GFI      E+GDDVF+H SA+   G  +L EGQ V++D
Sbjct: 1  MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQGDGFKSLDEGQAVSFD 50


>gi|283784399|ref|YP_003364264.1| cold shock-like protein [Citrobacter rodentium ICC168]
 gi|62126861|gb|AAX64564.1| RNA chaperone, negative regulator of cspA transcription
          [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|282947853|emb|CBG87413.1| cold shock-like protein [Citrobacter rodentium ICC168]
          Length = 79

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++ + N A G
Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 70

Query: 64 KYSA 67
            +A
Sbjct: 71 PSAA 74


>gi|332140725|ref|YP_004426463.1| putative Cold shock-like protein [Alteromonas macleodii str.
          'Deep ecotype']
 gi|327550747|gb|AEA97465.1| putative Cold shock-like protein [Alteromonas macleodii str.
          'Deep ecotype']
          Length = 70

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GF+TPE     G DVF+H  ++AS G   L EGQ V+++  Q
Sbjct: 7  GTVKWFNEEKGFGFLTPEA---GGKDVFVHFRSIASDGFKTLAEGQEVSFEVEQ 57


>gi|313902955|ref|ZP_07836350.1| cold-shock DNA-binding protein family [Thermaerobacter
          subterraneus DSM 13965]
 gi|313466679|gb|EFR62198.1| cold-shock DNA-binding protein family [Thermaerobacter
          subterraneus DSM 13965]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFIT +   +   DVF+H SA+  AG   L EGQ VT+D V+ +   K
Sbjct: 3  GTVKWFNAEKGYGFITRD---DGQGDVFVHFSAIVGAGYRTLEEGQKVTFDVVEGEKGPK 59

Query: 65 YSAENL 70
            A+N+
Sbjct: 60 --AQNV 63


>gi|302535426|ref|ZP_07287768.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302444321|gb|EFL16137.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +G    GDDVF H S +A+ G   L EGQ VT+D  Q      
Sbjct: 4  GTVKWFNAAKGFGFIEQDGG---GDDVFAHFSNIATQGFRELLEGQKVTFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|304406586|ref|ZP_07388242.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304344644|gb|EFM10482.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG    G DVF+H SA+   G   L EGQ V ++ VQ   
Sbjct: 1  MQQGTVKWFNAEKGFGFIEVEG----GSDVFVHFSAIQGEGFKTLDEGQRVEFNVVQ--G 54

Query: 62 NGKYSAENL 70
          N    AEN+
Sbjct: 55 NRGPQAENV 63


>gi|223946111|gb|ACN27139.1| unknown [Zea mays]
          Length = 187

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           RG++KW+N  KG+GFI+PE  +E   D+F+H+S++ S G  +L EG+ V +   + D
Sbjct: 7  QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD 61


>gi|224824762|ref|ZP_03697869.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
 gi|224603255|gb|EEG09431.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   E G+D+F H SA+ + G  +L EGQ V++D V N   GK
Sbjct: 4  GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINTQGFKSLKEGQRVSFDVV-NGPKGK 59

Query: 65 YSA 67
           ++
Sbjct: 60 QAS 62


>gi|170761832|ref|YP_001785618.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169408821|gb|ACA57232.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 65

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFIT     E G+DVF H S + S G  +L EGQ V+YD V+     +
Sbjct: 3  GTVKWFNGDKGFGFIT----GEDGNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKGPQ 58

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 59 --AENITII 65


>gi|56477397|ref|YP_158986.1| cold shock transcriptional regulator [Aromatoleum aromaticum
          EbN1]
 gi|56313440|emb|CAI08085.1| probably cold shock transcription regulator protein [Aromatoleum
          aromaticum EbN1]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 36/51 (70%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+     G+D+F H SA+  +G  +LTEGQ V YD
Sbjct: 4  GTVKWFNDSKGFGFITPD---NGGEDLFAHFSAIQGSGFKSLTEGQKVQYD 51


>gi|89098567|ref|ZP_01171450.1| cold shock protein [Bacillus sp. NRRL B-14911]
 gi|89086812|gb|EAR65930.1| cold shock protein [Bacillus sp. NRRL B-14911]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI      E G+DVF+H SA+ S G  +L EGQ V+++ V+  A G 
Sbjct: 4  GKVKWFNAEKGFGFI----EAEDGNDVFVHYSAIQSEGFKSLEEGQEVSFEVVEG-ARGP 58

Query: 65 YSAENLKL 72
           +A   KL
Sbjct: 59 QAANVTKL 66


>gi|297565415|ref|YP_003684387.1| cold-shock DNA-binding domain-containing protein [Meiothermus
          silvanus DSM 9946]
 gi|296849864|gb|ADH62879.1| cold-shock DNA-binding domain protein [Meiothermus silvanus DSM
          9946]
          Length = 74

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 5/61 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG T    DVF+H SA+ S G   L EG +V +D V+   NG
Sbjct: 3  KGKVKWFNAEKGFGFIEREGDT----DVFVHYSAIQSKGFRTLNEGDVVEFD-VEPGKNG 57

Query: 64 K 64
          K
Sbjct: 58 K 58


>gi|188996314|ref|YP_001930565.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
          YO3AOP1]
 gi|188931381|gb|ACD66011.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
          YO3AOP1]
          Length = 68

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 3/60 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW++  KG+GFIT +   ++G D+F+H SA+  +G  NL EGQ V ++ VQ++
Sbjct: 1  MAVTGTVKWFDSKKGFGFITRD---DNGQDIFVHFSAIQGSGFKNLEEGQKVRFEIVQDE 57


>gi|148266030|ref|YP_001232736.1| cold-shock DNA-binding domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146399530|gb|ABQ28163.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
          Rf4]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KG+GFI    + E+G+DVF+H SA+   G   L EG  VT+D V+
Sbjct: 1  MEKGTVKWFNESKGFGFI----ARENGEDVFVHFSAITGEGFKTLAEGDTVTFDVVK 53


>gi|86139271|ref|ZP_01057841.1| cold shock family protein [Roseobacter sp. MED193]
 gi|85824115|gb|EAQ44320.1| cold shock family protein [Roseobacter sp. MED193]
          Length = 68

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G DVF+H SAV  +GL  L + Q V+Y+ +Q   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPD---NGGSDVFVHISAVERSGLTGLADNQKVSYE-MQPGRDGR 59

Query: 65 YSAENLKLV 73
           SA +L L+
Sbjct: 60 ESAVDLALL 68


>gi|114571412|ref|YP_758092.1| cold-shock DNA-binding protein family protein [Maricaulis maris
          MCS10]
 gi|114341874|gb|ABI67154.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10]
          Length = 70

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K++N  KG+GFITP+   E GDDVF+H SAV ++GL  L++GQ V+++  + D  GK
Sbjct: 4  GVVKFFNQSKGFGFITPD---EGGDDVFVHISAVQASGLPGLSDGQKVSFE-TEPDRRGK 59

Query: 65 -YSAENLKL 72
             A +L+L
Sbjct: 60 GPKAVDLQL 68


>gi|226330617|ref|ZP_03806135.1| hypothetical protein PROPEN_04536 [Proteus penneri ATCC 35198]
 gi|225201412|gb|EEG83766.1| hypothetical protein PROPEN_04536 [Proteus penneri ATCC 35198]
          Length = 70

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFITP+  ++   DVF+H SA+ S    +L EGQ V++  ++N A G 
Sbjct: 7  GTVKWFNDDKGFGFITPKDGSK---DVFVHFSAIQSDSFKSLKEGQEVSFS-IENGAKGP 62

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 63 AAANVIAL 70


>gi|291616667|ref|YP_003519409.1| CspE [Pantoea ananatis LMG 20103]
 gi|304395648|ref|ZP_07377531.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|308186006|ref|YP_003930137.1| Cold shock-like protein cspE (CSP-E) [Pantoea vagans C9-1]
 gi|317047280|ref|YP_004114928.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
          At-9b]
 gi|291151697|gb|ADD76281.1| CspE [Pantoea ananatis LMG 20103]
 gi|304356942|gb|EFM21306.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|308056516|gb|ADO08688.1| Cold shock-like protein cspE (CSP-E) [Pantoea vagans C9-1]
 gi|316948897|gb|ADU68372.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
 gi|327393093|dbj|BAK10515.1| cold shock-like protein CspE [Pantoea ananatis AJ13355]
          Length = 69

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE  ++   DVF+H SA+ S G   L EGQ V ++ + + A G
Sbjct: 5  KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAIQSNGFKTLAEGQRVEFE-ITDGAKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVISL 69


>gi|239826758|ref|YP_002949382.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70]
 gi|239807051|gb|ACS24116.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI  EG    G DVF+H +A+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQHGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|319651256|ref|ZP_08005386.1| cold shock protein cspD [Bacillus sp. 2_A_57_CT2]
 gi|317397036|gb|EFV77744.1| cold shock protein cspD [Bacillus sp. 2_A_57_CT2]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  EG    GDDVF+H +A+   G  +L EGQ V+++ V+ + 
Sbjct: 1  MQNGKVKWFNNEKGFGFIEVEG----GDDVFVHFTAIQGEGFKSLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|257884506|ref|ZP_05664159.1| cold-shock protein [Enterococcus faecium 1,231,501]
 gi|257820344|gb|EEV47492.1| cold-shock protein [Enterococcus faecium 1,231,501]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+   G   L EGQ V+YD
Sbjct: 1  MNNGTVKWFNADKGFGFITG----EDGNDVFAHFSAIQGDGFKTLEEGQAVSYD 50


>gi|330963182|gb|EGH63442.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          actinidiae str. M302091]
          Length = 70

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56


>gi|330719414|ref|ZP_08314014.1| cold shock protein [Leuconostoc fallax KCTC 3537]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N +KGYGFIT     E+G+DVF H SA+   G   L EGQ V+++   +D
Sbjct: 1  MSEQGTVKWFNGEKGYGFITR----ENGEDVFAHFSAIQGDGFKTLEEGQSVSFEVESSD 56


>gi|228911418|ref|ZP_04075217.1| hypothetical protein bthur0013_55540 [Bacillus thuringiensis IBL
          200]
 gi|228848225|gb|EEM93080.1| hypothetical protein bthur0013_55540 [Bacillus thuringiensis IBL
          200]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G +KW+N DKG+GFI  EG    G+DVF+H SA+   G  +L EGQ VT++
Sbjct: 1  MEQGKVKWFNADKGFGFIEREG----GEDVFVHFSAIQIDGFKSLDEGQSVTFE 50


>gi|311068850|ref|YP_003973773.1| cold shock protein [Bacillus atrophaeus 1942]
 gi|310869367|gb|ADP32842.1| cold shock protein [Bacillus atrophaeus 1942]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N +KG+GFI      E+GDDVF+H SA+   G  +L EG+ V++D  Q
Sbjct: 1  MEQGKVKWFNAEKGFGFI----EREAGDDVFVHFSAIQGEGFKSLEEGESVSFDVEQ 53


>gi|307544234|ref|YP_003896713.1| cold shock protein CspA [Halomonas elongata DSM 2581]
 gi|307216258|emb|CBV41528.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas
          elongata DSM 2581]
          Length = 68

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI+P    + GDDVF H S + + G  +L EGQ V++D  Q      
Sbjct: 4  GTVKWFNDSKGFGFISP---ADGGDDVFAHFSEIQAEGFKSLQEGQSVSFDVTQGKKG-- 58

Query: 65 YSAENLKLV 73
            A N+K +
Sbjct: 59 LQASNIKAL 67


>gi|269124786|ref|YP_003298156.1| cold-shock DNA-binding domain-containing protein [Thermomonospora
          curvata DSM 43183]
 gi|268309744|gb|ACY96118.1| cold-shock DNA-binding domain protein [Thermomonospora curvata
          DSM 43183]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+NPDKG+GFI+P+   +   D+F+H SA+   G   L E Q V Y  VQ
Sbjct: 3  QGTVKWFNPDKGFGFISPD---DGSADIFVHHSAIQMRGFRTLVEEQRVEYTAVQ 54


>gi|28896678|ref|NP_803028.1| cold shock protein [Streptococcus pyogenes SSI-1]
 gi|71904413|ref|YP_281216.1| cold shock protein [Streptococcus pyogenes MGAS6180]
 gi|71911578|ref|YP_283128.1| cold shock protein [Streptococcus pyogenes MGAS5005]
 gi|94989406|ref|YP_597507.1| cold shock protein [Streptococcus pyogenes MGAS9429]
 gi|94993297|ref|YP_601396.1| cold shock protein [Streptococcus pyogenes MGAS2096]
 gi|94995255|ref|YP_603353.1| Cold shock protein [Streptococcus pyogenes MGAS10750]
 gi|209560193|ref|YP_002286665.1| Major cold-shock protein [Streptococcus pyogenes NZ131]
 gi|306826514|ref|ZP_07459824.1| cold shock protein CspA [Streptococcus pyogenes ATCC 10782]
 gi|28811932|dbj|BAC64861.1| putative cold shock protein [Streptococcus pyogenes SSI-1]
 gi|71803508|gb|AAX72861.1| cold shock protein [Streptococcus pyogenes MGAS6180]
 gi|71854360|gb|AAZ52383.1| cold shock protein [Streptococcus pyogenes MGAS5005]
 gi|94542914|gb|ABF32963.1| cold shock protein [Streptococcus pyogenes MGAS9429]
 gi|94546805|gb|ABF36852.1| Cold shock protein [Streptococcus pyogenes MGAS2096]
 gi|94548763|gb|ABF38809.1| Cold shock protein [Streptococcus pyogenes MGAS10750]
 gi|209541394|gb|ACI61970.1| Major cold-shock protein [Streptococcus pyogenes NZ131]
 gi|304431301|gb|EFM34300.1| cold shock protein CspA [Streptococcus pyogenes ATCC 10782]
          Length = 69

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI    STE+G DVF H SA+ + G   L EGQ V +D
Sbjct: 5  QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVAFD 52


>gi|299138232|ref|ZP_07031411.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX8]
 gi|298599478|gb|EFI55637.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX8]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GF+    S  +GDDVF+H +A+ S G  +L EGQ V ++ V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFL----SRANGDDVFVHHTAIQSNGFRSLQEGQSVQFNVVKGPK 56

Query: 62 NGKYSAENLKLV 73
             + AEN+++V
Sbjct: 57 G--WQAENVQVV 66


>gi|312114304|ref|YP_004011900.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
 gi|311219433|gb|ADP70801.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
          Length = 71

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N  KG+GFITP+   E G DVF+H SAV  +G+  L EG  VTY+  Q D
Sbjct: 1  MRQTGTVKFFNQAKGFGFITPD---EGGKDVFVHISAVERSGVGMLDEGMRVTYE-TQPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 PKGK 60


>gi|260584219|ref|ZP_05851967.1| conserved hypothetical protein [Granulicatella elegans ATCC
          700633]
 gi|260158845|gb|EEW93913.1| conserved hypothetical protein [Granulicatella elegans ATCC
          700633]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI      E G DVF+H SA+ S G  +L EGQ V ++ V+  A
Sbjct: 1  MEQGKVKWFNAEKGFGFI----EREDGSDVFVHFSAIQSEGYKSLDEGQAVEFE-VEEGA 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|302545223|ref|ZP_07297565.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302462841|gb|EFL25934.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI  +G    G DVF H S +A+ G   L EGQ VT+D  Q    G+
Sbjct: 4  GTVKWFNAEKGYGFIEQDG---GGADVFAHYSNIATQGFRELQEGQKVTFDVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 57 KGPQAENIVP 66


>gi|58581493|ref|YP_200509.1| cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426087|gb|AAW75124.1| cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 75

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+PE   +   DVF H SA+ S G  +L EGQ V+YD  Q
Sbjct: 11 GTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVSYDVTQ 61


>gi|303246711|ref|ZP_07332989.1| cold-shock DNA-binding domain protein [Desulfovibrio
          fructosovorans JJ]
 gi|302492051|gb|EFL51929.1| cold-shock DNA-binding domain protein [Desulfovibrio
          fructosovorans JJ]
          Length = 68

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW++  KGYGFI  EG     DDVF+H S++   G   L EG+LV +D +Q +
Sbjct: 1  MGFEGTVKWFSDKKGYGFIMREGE----DDVFVHYSSIEGEGFRTLREGELVQFDIIQGE 56


>gi|119944526|ref|YP_942206.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119863130|gb|ABM02607.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 68

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      ESG DVF H SA++S G   LTEGQ V +   Q     +
Sbjct: 6  GTVKWFNESKGFGFI----EQESGPDVFAHFSAISSTGFKTLTEGQKVQFTVTQGQKGPQ 61

Query: 65 YSAENL 70
            AEN+
Sbjct: 62 --AENI 65


>gi|16759589|ref|NP_455206.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|16764006|ref|NP_459621.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|29142638|ref|NP_805980.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|56414236|ref|YP_151311.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|146310817|ref|YP_001175891.1| cold shock protein CspE [Enterobacter sp. 638]
 gi|161615160|ref|YP_001589125.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Paratyphi B str. SPB7]
 gi|162139604|ref|YP_215645.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|167990632|ref|ZP_02571732.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|194444501|ref|YP_002039870.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194448211|ref|YP_002044662.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194472567|ref|ZP_03078551.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194735055|ref|YP_002113746.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195873911|ref|ZP_02699682.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|197251616|ref|YP_002145603.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197262485|ref|ZP_03162559.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197300846|ref|ZP_02661676.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|197363159|ref|YP_002142796.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|198244715|ref|YP_002214617.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|200390458|ref|ZP_03217069.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|204930521|ref|ZP_03221451.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|205351917|ref|YP_002225718.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205357082|ref|ZP_02344593.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205358472|ref|ZP_02656696.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|205358940|ref|ZP_02665405.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|205359626|ref|ZP_02830749.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|205360370|ref|ZP_02682831.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|213053415|ref|ZP_03346293.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
 gi|213425108|ref|ZP_03357858.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. E02-1180]
 gi|213580429|ref|ZP_03362255.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
 gi|213648627|ref|ZP_03378680.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
 gi|213857366|ref|ZP_03384337.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
 gi|224582464|ref|YP_002636262.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|238911579|ref|ZP_04655416.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Tennessee str. CDC07-0191]
 gi|289809995|ref|ZP_06540624.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
 gi|311280471|ref|YP_003942702.1| cold-shock DNA-binding domain-containing protein [Enterobacter
          cloacae SCF1]
 gi|25296131|pir||AH0579 cold shock-like protein cspE [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|16419141|gb|AAL19580.1| RNA chaperone, negative regulator of cspA transcription
          [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|16501881|emb|CAD05106.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29138269|gb|AAO69840.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|56128493|gb|AAV77999.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|145317693|gb|ABP59840.1| cold shock protein E (CspE) [Enterobacter sp. 638]
 gi|161364524|gb|ABX68292.1| hypothetical protein SPAB_02928 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194403164|gb|ACF63386.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194406515|gb|ACF66734.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194458931|gb|EDX47770.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194710557|gb|ACF89778.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195631943|gb|EDX50463.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|197094636|emb|CAR60158.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|197215319|gb|ACH52716.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197240740|gb|EDY23360.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197290243|gb|EDY29599.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|197939231|gb|ACH76564.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|199602903|gb|EDZ01449.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|204320455|gb|EDZ05658.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|205271698|emb|CAR36529.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205324288|gb|EDZ12127.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205330839|gb|EDZ17603.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|205334064|gb|EDZ20828.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|205340419|gb|EDZ27183.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|205344148|gb|EDZ30912.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|205349743|gb|EDZ36374.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|224466991|gb|ACN44821.1| cold shock protein E [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|261245902|emb|CBG23703.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267992359|gb|ACY87244.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|308749666|gb|ADO49418.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1]
 gi|312911660|dbj|BAJ35634.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. T000240]
 gi|320084898|emb|CBY94688.1| Cold shock-like protein cspE CSP-E [Salmonella enterica subsp.
          enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321226208|gb|EFX51259.1| Cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322613239|gb|EFY10182.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315996572]
 gi|322621307|gb|EFY18164.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-1]
 gi|322623727|gb|EFY20565.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-3]
 gi|322628999|gb|EFY25778.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-4]
 gi|322631721|gb|EFY28475.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-1]
 gi|322637543|gb|EFY34245.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-2]
 gi|322641883|gb|EFY38513.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 531954]
 gi|322646727|gb|EFY43233.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. NC_MB110209-0054]
 gi|322651428|gb|EFY47808.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. OH_2009072675]
 gi|322653121|gb|EFY49455.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. CASC_09SCPH15965]
 gi|322658841|gb|EFY55096.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 19N]
 gi|322664889|gb|EFY61082.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 81038-01]
 gi|322668891|gb|EFY65043.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. MD_MDA09249507]
 gi|322670603|gb|EFY66736.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 414877]
 gi|322675344|gb|EFY71420.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 366867]
 gi|322682185|gb|EFY78210.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 413180]
 gi|322684985|gb|EFY80982.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 446600]
 gi|322713693|gb|EFZ05264.1| RNA chaperone, negative regulator of cspA transcription
          [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. A50]
 gi|323128946|gb|ADX16376.1| cold shock-like protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
 gi|323193956|gb|EFZ79158.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609458-1]
 gi|323197952|gb|EFZ83074.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556150-1]
 gi|323202001|gb|EFZ87061.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609460]
 gi|323207134|gb|EFZ92087.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 507440-20]
 gi|323210399|gb|EFZ95290.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556152]
 gi|323214339|gb|EFZ99090.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB101509-0077]
 gi|323221490|gb|EGA05904.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB102109-0047]
 gi|323225534|gb|EGA09764.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
 gi|323231092|gb|EGA15208.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB111609-0052]
 gi|323234076|gb|EGA18165.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009083312]
 gi|323238229|gb|EGA22287.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009085258]
 gi|323242537|gb|EGA26561.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315731156]
 gi|323248486|gb|EGA32420.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2009159199]
 gi|323251298|gb|EGA35170.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008282]
 gi|323259226|gb|EGA42869.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008283]
 gi|323261634|gb|EGA45209.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008284]
 gi|323264816|gb|EGA48317.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008285]
 gi|323272347|gb|EGA55754.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008287]
 gi|326622372|gb|EGE28717.1| RNA chaperone, negative regulator of cspA transcription
          [Salmonella enterica subsp. enterica serovar Dublin
          str. 3246]
 gi|326626956|gb|EGE33299.1| cold shock-like protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
 gi|332987574|gb|AEF06557.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
          Length = 69

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++ + N A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 60

Query: 64 KYSA 67
            +A
Sbjct: 61 PSAA 64


>gi|311743915|ref|ZP_07717721.1| CspA family cold shock transcriptional regulator [Aeromicrobium
          marinum DSM 15272]
 gi|311313045|gb|EFQ82956.1| CspA family cold shock transcriptional regulator [Aeromicrobium
          marinum DSM 15272]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N DKG+GFI P+G    G+D+F H S++A++G  +L E Q V +D  Q
Sbjct: 4  GTVKWFNADKGFGFIAPDG---GGEDLFAHFSSIAASGFRSLDENQKVEFDVEQ 54


>gi|269792002|ref|YP_003316906.1| cold-shock DNA-binding domain-containing protein
          [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099637|gb|ACZ18624.1| cold-shock DNA-binding domain protein [Thermanaerovibrio
          acidaminovorans DSM 6589]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  KGYGFIT    T+ G DVF H SA+   G   L EGQ V+ D V+  
Sbjct: 1  MATQGTVKWFNATKGYGFIT----TDEGRDVFCHFSAIKMDGYRTLEEGQRVSLD-VEMG 55

Query: 61 ANGKYSAENLKL 72
            G+ +A  +KL
Sbjct: 56 PKGEQAANVVKL 67


>gi|295094368|emb|CBK83459.1| cold-shock DNA-binding protein family [Coprococcus sp. ART55/1]
          Length = 71

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N +KGYGFI+ +   E+G DVF+H SA+ S G   L EGQ VT+D
Sbjct: 1  MKNGTVKWFNGEKGYGFISDD---ETGKDVFVHFSAINSDGYKTLNEGQKVTFD 51


>gi|331269838|ref|YP_004396330.1| cold shock protein [Clostridium botulinum BKT015925]
 gi|329126388|gb|AEB76333.1| cold shock protein [Clostridium botulinum BKT015925]
          Length = 65

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFIT    TE G+DVF H S +   G   L EGQ V++D V+  A G 
Sbjct: 3  GTVKWFNAEKGFGFIT----TEEGNDVFAHFSQINKEGFKTLEEGQNVSFDVVEG-AKGP 57

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 58 -QAENITIL 65


>gi|310816002|ref|YP_003963966.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium
          vulgare Y25]
 gi|308754737|gb|ADO42666.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium
          vulgare Y25]
          Length = 68

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE  ++   DVF+H S++  +G+ +L +GQ V++D ++   +G+
Sbjct: 4  GTVKWFNATKGFGFIAPESGSK---DVFVHISSMQRSGISDLADGQKVSFD-IEEGRDGR 59

Query: 65 YSAENLKL 72
           +A N+ L
Sbjct: 60 ENAINITL 67


>gi|281500776|pdb|3I2Z|B Chain B, Structure Of Cold Shock Protein E From Salmonella
          Typhimurium
 gi|281500777|pdb|3I2Z|A Chain A, Structure Of Cold Shock Protein E From Salmonella
          Typhimurium
          Length = 71

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++ + N A G
Sbjct: 7  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 62

Query: 64 KYSA 67
            +A
Sbjct: 63 PSAA 66


>gi|207856095|ref|YP_002242746.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|206707898|emb|CAR32186.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|301157230|emb|CBW16717.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
          Length = 70

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++ + N A G
Sbjct: 6  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 61

Query: 64 KYSA 67
            +A
Sbjct: 62 PSAA 65


>gi|197284318|ref|YP_002150190.1| cold shock protein CspE [Proteus mirabilis HI4320]
 gi|227358541|ref|ZP_03842866.1| cold shock protein [Proteus mirabilis ATCC 29906]
 gi|194681805|emb|CAR41046.1| putative cold shock protein [Proteus mirabilis HI4320]
 gi|227161252|gb|EEI46326.1| cold shock protein [Proteus mirabilis ATCC 29906]
          Length = 69

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE  ++   DVF+H SA+ S G   L EGQ V ++ V + A G
Sbjct: 5  KGNVKWFNETKGFGFITPEDGSK---DVFVHFSAIVSEGFKTLAEGQKVEFE-VTDGAKG 60

Query: 64 KYSA 67
            +A
Sbjct: 61 PSAA 64


>gi|188025849|ref|ZP_02960049.2| hypothetical protein PROSTU_01951 [Providencia stuartii ATCC
          25827]
 gi|188020731|gb|EDU58771.1| hypothetical protein PROSTU_01951 [Providencia stuartii ATCC
          25827]
          Length = 85

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+  AG   L EGQ V +  ++N A G
Sbjct: 21 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGAGFKTLAEGQQVEFT-IENGAKG 76

Query: 64 KYSA 67
            +A
Sbjct: 77 PAAA 80


>gi|251794338|ref|YP_003009069.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
 gi|247541964|gb|ACS98982.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
          Length = 66

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG    G+DVF+H SA+   G  +L EGQ V ++ VQ   
Sbjct: 1  MEQGTVKWFNAEKGFGFIEVEG----GNDVFVHFSAIQGDGFKSLDEGQRVEFNIVQ--G 54

Query: 62 NGKYSAENL 70
          N    AEN+
Sbjct: 55 NRGPQAENV 63


>gi|253573284|ref|ZP_04850627.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846812|gb|EES74817.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 65

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI  EG    G+DVF+H SA+   G   L EGQ V ++ + +   G
Sbjct: 2  KGTVKWFNAEKGYGFIQVEG----GEDVFVHFSAIQGEGFKTLEEGQAVEFE-ITDGNRG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|238015158|gb|ACR38614.1| unknown [Zea mays]
          Length = 240

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           RG++KW+N  KG+GFI+PE  +E   D+F+H+S++ S G  +L EG+ V +   + D
Sbjct: 7  QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD 61


>gi|224033945|gb|ACN36048.1| unknown [Zea mays]
          Length = 249

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           RG++KW+N  KG+GFI+PE  +E   D+F+H+S++ S G  +L EG+ V +   + D
Sbjct: 7  QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD 61


>gi|313891994|ref|ZP_07825595.1| cold shock-like protein CspE [Dialister microaerophilus UPII
          345-E]
 gi|329120945|ref|ZP_08249576.1| cold shock protein [Dialister micraerophilus DSM 19965]
 gi|313119637|gb|EFR42828.1| cold shock-like protein CspE [Dialister microaerophilus UPII
          345-E]
 gi|327471107|gb|EGF16561.1| cold shock protein [Dialister micraerophilus DSM 19965]
          Length = 65

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 5/64 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++ +KGYGFI      E G DVF+H SA+ + G   LTEGQ V +D ++  A G
Sbjct: 2  KGTVKWFSAEKGYGFI----EREEGGDVFVHFSAIQTEGFKTLTEGQKVEFDIIEG-ARG 56

Query: 64 KYSA 67
            +A
Sbjct: 57 PQAA 60


>gi|294498234|ref|YP_003561934.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295703585|ref|YP_003596660.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294348171|gb|ADE68500.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294801244|gb|ADF38310.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KGYGFI  EG    G DVF+H SA+ S G  +L EGQ V+++ V+ +
Sbjct: 1  MQNGKVKWFNNEKGYGFIEVEG----GSDVFVHFSAIQSEGYKSLEEGQEVSFEIVEGN 55


>gi|220933359|ref|YP_002512258.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219994669|gb|ACL71271.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 67

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G DVF+H SA++ +G   L E Q V++D VQ+   G 
Sbjct: 4  GTVKWFNESKGFGFITPD---DGGKDVFVHFSAISGSGFKTLAENQKVSFD-VQDGPKGP 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|117926229|ref|YP_866846.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
          MC-1]
 gi|117609985|gb|ABK45440.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
          Length = 69

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KGYGFI    S E G DVF+H SA+  +G   LT+GQ V +D VQ      
Sbjct: 7  GTVKFFNEQKGYGFI----SREDGSDVFVHFSAIQGSGFRTLTQGQKVEFDTVQGKKG-- 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 LQAENV 66


>gi|284990416|ref|YP_003408970.1| cold-shock DNA-binding domain-containing protein
          [Geodermatophilus obscurus DSM 43160]
 gi|284063661|gb|ADB74599.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
          DSM 43160]
          Length = 67

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KW+N +KG+GF TP+G    G DVF+H SA+ ++G  +L EGQ +++D  Q
Sbjct: 3  EGTVKWFNAEKGFGFATPDG---GGPDVFVHYSAIQTSGYRSLDEGQRISFDIEQ 54


>gi|322412804|gb|EFY03712.1| Major cold-shock protein [Streptococcus dysgalactiae subsp.
          dysgalactiae ATCC 27957]
 gi|323128184|gb|ADX25481.1| Major cold-shock protein [Streptococcus dysgalactiae subsp.
          equisimilis ATCC 12394]
          Length = 67

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI    STE+G DVF H SA+ + G   L EGQ V +D
Sbjct: 3  QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVEFD 50


>gi|237746806|ref|ZP_04577286.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
          HOxBLS]
 gi|229378157|gb|EEO28248.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
          HOxBLS]
          Length = 67

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   E G+DVF H SA+ S G  +L E Q V++D +     GK
Sbjct: 4  GTVKWFNDSKGFGFITPD---EGGEDVFAHFSAINSEGFKSLKENQRVSFD-ITTGPKGK 59

Query: 65 YSAENLKLV 73
            A N+ ++
Sbjct: 60 -QASNITVI 67


>gi|21243129|ref|NP_642711.1| major cold shock protein [Xanthomonas axonopodis pv. citri str.
          306]
 gi|78048148|ref|YP_364323.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
 gi|325928087|ref|ZP_08189300.1| cold-shock DNA-binding protein family [Xanthomonas perforans
          91-118]
 gi|21108648|gb|AAM37247.1| major cold shock protein [Xanthomonas axonopodis pv. citri str.
          306]
 gi|78036578|emb|CAJ24269.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
 gi|325541585|gb|EGD13114.1| cold-shock DNA-binding protein family [Xanthomonas perforans
          91-118]
          Length = 69

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ  
Sbjct: 7  GTVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQ 58


>gi|325916970|ref|ZP_08179212.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325536821|gb|EGD08575.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
          Length = 69

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ  
Sbjct: 7  GTVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQ 58


>gi|307825897|ref|ZP_07656112.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307733016|gb|EFO03878.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 69

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  EG    G DVF+H SA+  AG   L EGQ VT +  Q
Sbjct: 7  GTVKWFNDEKGFGFIEQEG----GKDVFVHHSAINGAGRKTLREGQKVTMEVTQ 56


>gi|90415487|ref|ZP_01223421.1| Cold shock protein [marine gamma proteobacterium HTCC2207]
 gi|90332810|gb|EAS47980.1| Cold shock protein [marine gamma proteobacterium HTCC2207]
          Length = 69

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  EG    G DVF+H SA+ + G  +L EGQ VT +  Q     +
Sbjct: 7  GTVKWFNDSKGFGFIEQEG----GGDVFVHHSAIQADGFKSLKEGQAVTMEVTQGQKGAQ 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 --AENV 66


>gi|27904911|ref|NP_778037.1| cold shock protein CspE [Buchnera aphidicola str. Bp (Baizongia
          pistaciae)]
 gi|38372204|sp|Q89A90|CSPE_BUCBP RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|27904309|gb|AAO27142.1| cold shock protein CspA [Buchnera aphidicola str. Bp (Baizongia
          pistaciae)]
          Length = 69

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L+EGQ V ++ +   A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLSEGQSVEFE-ITEGAKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVISL 69


>gi|16801190|ref|NP_471458.1| hypothetical protein lin2124 [Listeria innocua Clip11262]
 gi|16804055|ref|NP_465540.1| hypothetical protein lmo2016 [Listeria monocytogenes EGD-e]
 gi|46908245|ref|YP_014634.1| cold-shock domain-contain protein [Listeria monocytogenes
          serotype 4b str. F2365]
 gi|47093186|ref|ZP_00230960.1| cold-shock domain family protein [Listeria monocytogenes str. 4b
          H7858]
 gi|47096659|ref|ZP_00234246.1| cold-shock domain family protein [Listeria monocytogenes str.
          1/2a F6854]
 gi|116873452|ref|YP_850233.1| cold shock-like protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|217963837|ref|YP_002349515.1| hypothetical protein LMHCC_0544 [Listeria monocytogenes HCC23]
 gi|224498533|ref|ZP_03666882.1| hypothetical protein LmonF1_02104 [Listeria monocytogenes Finland
          1988]
 gi|224501183|ref|ZP_03669490.1| hypothetical protein LmonFR_01460 [Listeria monocytogenes FSL
          R2-561]
 gi|226224613|ref|YP_002758720.1| major cold-shock protein [Listeria monocytogenes Clip81459]
 gi|254825493|ref|ZP_05230494.1| cold-shock domain family protein [Listeria monocytogenes FSL
          J1-194]
 gi|254827097|ref|ZP_05231784.1| cspB [Listeria monocytogenes FSL N3-165]
 gi|254831742|ref|ZP_05236397.1| major cold-shock protein [Listeria monocytogenes 10403S]
 gi|254854374|ref|ZP_05243722.1| cold-shock domain family protein [Listeria monocytogenes FSL
          R2-503]
 gi|254899286|ref|ZP_05259210.1| major cold-shock protein [Listeria monocytogenes J0161]
 gi|254912575|ref|ZP_05262587.1| cspB [Listeria monocytogenes J2818]
 gi|254931816|ref|ZP_05265175.1| cold-shock domain family protein [Listeria monocytogenes HPB2262]
 gi|254936901|ref|ZP_05268598.1| cold-shock domain family protein [Listeria monocytogenes F6900]
 gi|255022834|ref|ZP_05294820.1| major cold-shock protein [Listeria monocytogenes FSL J1-208]
 gi|255029500|ref|ZP_05301451.1| major cold-shock protein [Listeria monocytogenes LO28]
 gi|255521591|ref|ZP_05388828.1| major cold-shock protein [Listeria monocytogenes FSL J1-175]
 gi|284802462|ref|YP_003414327.1| hypothetical protein LM5578_2218 [Listeria monocytogenes 08-5578]
 gi|284995604|ref|YP_003417372.1| hypothetical protein LM5923_2169 [Listeria monocytogenes 08-5923]
 gi|290892166|ref|ZP_06555162.1| cold-shock domain-containing protein [Listeria monocytogenes FSL
          J2-071]
 gi|300763679|ref|ZP_07073676.1| cold-shock domain family protein [Listeria monocytogenes FSL
          N1-017]
 gi|61221528|sp|P0A357|CSPB_LISMO RecName: Full=Cold shock-like protein CspLB; Short=CspB
 gi|61221529|sp|P0A358|CSPB_LISIN RecName: Full=Cold shock-like protein CspLB; Short=CspB
 gi|12054789|emb|CAC20631.1| cold shock protein (CspLB) [Listeria monocytogenes]
 gi|16411469|emb|CAD00094.1| cspB [Listeria monocytogenes EGD-e]
 gi|16414638|emb|CAC97354.1| cspB [Listeria innocua Clip11262]
 gi|46881516|gb|AAT04811.1| cold-shock domain family protein [Listeria monocytogenes serotype
          4b str. F2365]
 gi|47014981|gb|EAL05927.1| cold-shock domain family protein [Listeria monocytogenes str.
          1/2a F6854]
 gi|47018437|gb|EAL09196.1| cold-shock domain family protein [Listeria monocytogenes str. 4b
          H7858]
 gi|116742330|emb|CAK21454.1| cold shock-like protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|217333107|gb|ACK38901.1| conserved domain protein [Listeria monocytogenes HCC23]
 gi|225877075|emb|CAS05786.1| Putative major cold-shock protein [Listeria monocytogenes
          serotype 4b str. CLIP 80459]
 gi|258599480|gb|EEW12805.1| cspB [Listeria monocytogenes FSL N3-165]
 gi|258607773|gb|EEW20381.1| cold-shock domain family protein [Listeria monocytogenes FSL
          R2-503]
 gi|258609499|gb|EEW22107.1| cold-shock domain family protein [Listeria monocytogenes F6900]
 gi|284058024|gb|ADB68965.1| hypothetical protein LM5578_2218 [Listeria monocytogenes 08-5578]
 gi|284061071|gb|ADB72010.1| hypothetical protein LM5923_2169 [Listeria monocytogenes 08-5923]
 gi|290558289|gb|EFD91807.1| cold-shock domain-containing protein [Listeria monocytogenes FSL
          J2-071]
 gi|293583370|gb|EFF95402.1| cold-shock domain family protein [Listeria monocytogenes HPB2262]
 gi|293590564|gb|EFF98898.1| cspB [Listeria monocytogenes J2818]
 gi|293594735|gb|EFG02496.1| cold-shock domain family protein [Listeria monocytogenes FSL
          J1-194]
 gi|300515415|gb|EFK42465.1| cold-shock domain family protein [Listeria monocytogenes FSL
          N1-017]
 gi|307571592|emb|CAR84771.1| cold-shock domain family protein [Listeria monocytogenes L99]
 gi|313607794|gb|EFR83992.1| putative cold-shock protein [Listeria monocytogenes FSL F2-208]
 gi|313618008|gb|EFR90155.1| putative cold-shock protein [Listeria innocua FSL S4-378]
 gi|313623004|gb|EFR93297.1| putative cold-shock protein [Listeria innocua FSL J1-023]
 gi|328466357|gb|EGF37514.1| hypothetical protein LM1816_12332 [Listeria monocytogenes 1816]
 gi|332312449|gb|EGJ25544.1| Cold shock-like protein CspD [Listeria monocytogenes str. Scott
          A]
          Length = 66

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ V ++ V+
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVEG----GDDVFVHFSAIEGEGFKTLDEGQSVEFEIVE 53


>gi|331700983|ref|YP_004397942.1| cold-shock DNA-binding domain-containing protein [Lactobacillus
          buchneri NRRL B-30929]
 gi|329128326|gb|AEB72879.1| cold-shock DNA-binding domain protein [Lactobacillus buchneri
          NRRL B-30929]
          Length = 67

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKGYGFIT     E G DVF+H SA+ + G   L EGQ VT D   +D
Sbjct: 1  MEQGTVKWFNGDKGYGFIT----LEDGKDVFVHFSAINADGYKTLEEGQKVTLDVEDSD 55


>gi|242063850|ref|XP_002453214.1| hypothetical protein SORBIDRAFT_04g001720 [Sorghum bicolor]
 gi|241933045|gb|EES06190.1| hypothetical protein SORBIDRAFT_04g001720 [Sorghum bicolor]
          Length = 251

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           RG++KW+N  KG+GFI+PE  +E   D+F+H+S++ S G  +L EG+ V +   + D
Sbjct: 7  QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD 61


>gi|149242120|pdb|2I5L|X Chain X, Crystal Structure Of Bacillus Subtilis Cold Shock
          Protein Variant Bs-Cspb M1rE3KK65I
          Length = 67

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 3  KGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN 55


>gi|91199641|emb|CAI77996.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|96771688|emb|CAI78270.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|114049906|emb|CAK50923.1| putative cold shock protein [Streptomyces ambofaciens]
 gi|114050128|emb|CAK51161.1| putative cold shock protein [Streptomyces ambofaciens]
 gi|117164235|emb|CAJ87776.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|126347347|emb|CAJ89054.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
          Length = 67

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI+P+   E G DVF+H SA+  +G  NL E Q V ++  Q
Sbjct: 3  QGTVKWFNGEKGFGFISPD---EGGPDVFVHFSAIQGSGFRNLEENQRVEFEITQ 54


>gi|307545830|ref|YP_003898309.1| cold shock protein CspA [Halomonas elongata DSM 2581]
 gi|307217854|emb|CBV43124.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas
          elongata DSM 2581]
          Length = 68

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI+P+   ++GDD+F H S + + G  +L +GQ V++D  Q      
Sbjct: 4  GTVKWFNDTKGFGFISPD---DNGDDLFAHFSEIQAEGFKSLQDGQKVSFDVTQGKKG-- 58

Query: 65 YSAENLKLV 73
            A N+K+V
Sbjct: 59 LQASNIKVV 67


>gi|152975949|ref|YP_001375466.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152024701|gb|ABS22471.1| putative cold-shock DNA-binding domain protein [Bacillus
          cytotoxicus NVH 391-98]
          Length = 66

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ VT++  Q +
Sbjct: 1  MQNGKVKWFNAEKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN 55


>gi|30021641|ref|NP_833272.1| cold shock protein [Bacillus cereus ATCC 14579]
 gi|30263487|ref|NP_845864.1| cold shock protein CspB [Bacillus anthracis str. Ames]
 gi|42782603|ref|NP_979850.1| cold shock protein CspB [Bacillus cereus ATCC 10987]
 gi|47528880|ref|YP_020229.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor']
 gi|47569978|ref|ZP_00240642.1| cold-shock domain family protein-related protein [Bacillus cereus
          G9241]
 gi|49186338|ref|YP_029590.1| cold shock protein CspB [Bacillus anthracis str. Sterne]
 gi|49479281|ref|YP_037619.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|52141994|ref|YP_084834.1| cold shock protein [Bacillus cereus E33L]
 gi|118478788|ref|YP_895939.1| cold-shock DNA-binding protein family protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|167637065|ref|ZP_02395345.1| cold shock protein CspB [Bacillus anthracis str. A0193]
 gi|190564523|ref|ZP_03017444.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I]
 gi|196034229|ref|ZP_03101639.1| cold shock protein CspB [Bacillus cereus W]
 gi|196038347|ref|ZP_03105656.1| cold shock protein CspB [Bacillus cereus NVH0597-99]
 gi|196043023|ref|ZP_03110262.1| cold shock protein CspB [Bacillus cereus 03BB108]
 gi|206969007|ref|ZP_03229962.1| cold shock protein CspB [Bacillus cereus AH1134]
 gi|206975495|ref|ZP_03236408.1| cold shock protein CspB [Bacillus cereus H3081.97]
 gi|217960932|ref|YP_002339500.1| cold shock protein CspB [Bacillus cereus AH187]
 gi|218232785|ref|YP_002368351.1| cold shock protein CspB [Bacillus cereus B4264]
 gi|218898630|ref|YP_002447041.1| cold shock protein CspB [Bacillus cereus G9842]
 gi|218904664|ref|YP_002452498.1| cold shock protein CspB [Bacillus cereus AH820]
 gi|222096990|ref|YP_002531047.1| cold shock protein [Bacillus cereus Q1]
 gi|225865502|ref|YP_002750880.1| cold shock protein CspB [Bacillus cereus 03BB102]
 gi|227813634|ref|YP_002813643.1| cold shock protein CspB [Bacillus anthracis str. CDC 684]
 gi|228902007|ref|ZP_04066172.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|228912180|ref|ZP_04075895.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|228916152|ref|ZP_04079722.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228922246|ref|ZP_04085553.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228928576|ref|ZP_04091613.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228934813|ref|ZP_04097644.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228940621|ref|ZP_04103187.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228947154|ref|ZP_04109448.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228953805|ref|ZP_04115844.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228959724|ref|ZP_04121399.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228969486|ref|ZP_04130298.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228973540|ref|ZP_04134124.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228980099|ref|ZP_04140415.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|228986625|ref|ZP_04146756.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229047204|ref|ZP_04192818.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|229071035|ref|ZP_04204261.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|229080742|ref|ZP_04213260.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
 gi|229092502|ref|ZP_04223658.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
 gi|229110960|ref|ZP_04240521.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
 gi|229123055|ref|ZP_04252262.1| Cold shock protein cspB [Bacillus cereus 95/8201]
 gi|229128809|ref|ZP_04257786.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
 gi|229140143|ref|ZP_04268701.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
 gi|229146104|ref|ZP_04274481.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|229151732|ref|ZP_04279933.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|229159169|ref|ZP_04287204.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
 gi|229162371|ref|ZP_04290334.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|229179821|ref|ZP_04307168.1| Cold shock protein cspB [Bacillus cereus 172560W]
 gi|229185756|ref|ZP_04312933.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
 gi|229191625|ref|ZP_04318604.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|229197647|ref|ZP_04324368.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|229600528|ref|YP_002867733.1| cold shock protein CspB [Bacillus anthracis str. A0248]
 gi|254686104|ref|ZP_05149963.1| cold shock protein CspB [Bacillus anthracis str. CNEVA-9066]
 gi|254723505|ref|ZP_05185293.1| cold shock protein CspB [Bacillus anthracis str. A1055]
 gi|254738577|ref|ZP_05196280.1| cold shock protein CspB [Bacillus anthracis str. Western North
          America USA6153]
 gi|254744864|ref|ZP_05202542.1| cold shock protein CspB [Bacillus anthracis str. Kruger B]
 gi|296504044|ref|YP_003665744.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|300117665|ref|ZP_07055447.1| cold shock protein CspB [Bacillus cereus SJ1]
 gi|301055025|ref|YP_003793236.1| cold shock protein [Bacillus anthracis CI]
 gi|29897196|gb|AAP10473.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gi|30258122|gb|AAP27350.1| cold shock protein CspB [Bacillus anthracis str. Ames]
 gi|42738529|gb|AAS42458.1| cold shock protein CspB [Bacillus cereus ATCC 10987]
 gi|47504028|gb|AAT32704.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor']
 gi|47553376|gb|EAL11763.1| cold-shock domain family protein-related protein [Bacillus cereus
          G9241]
 gi|49180265|gb|AAT55641.1| cold shock protein CspB [Bacillus anthracis str. Sterne]
 gi|49330837|gb|AAT61483.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|51975463|gb|AAU17013.1| cold shock protein [Bacillus cereus E33L]
 gi|118418013|gb|ABK86432.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
          str. Al Hakam]
 gi|167514572|gb|EDR89938.1| cold shock protein CspB [Bacillus anthracis str. A0193]
 gi|190563840|gb|EDV17804.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I]
 gi|195993303|gb|EDX57261.1| cold shock protein CspB [Bacillus cereus W]
 gi|196026507|gb|EDX65175.1| cold shock protein CspB [Bacillus cereus 03BB108]
 gi|196030755|gb|EDX69353.1| cold shock protein CspB [Bacillus cereus NVH0597-99]
 gi|206736048|gb|EDZ53206.1| cold shock protein CspB [Bacillus cereus AH1134]
 gi|206746397|gb|EDZ57791.1| cold shock protein CspB [Bacillus cereus H3081.97]
 gi|217063996|gb|ACJ78246.1| cold shock protein CspB [Bacillus cereus AH187]
 gi|218160742|gb|ACK60734.1| cold shock protein CspB [Bacillus cereus B4264]
 gi|218538592|gb|ACK90990.1| cold shock protein CspB [Bacillus cereus AH820]
 gi|218542988|gb|ACK95382.1| cold shock protein CspB [Bacillus cereus G9842]
 gi|221241048|gb|ACM13758.1| cold shock protein [Bacillus cereus Q1]
 gi|225790203|gb|ACO30420.1| cold shock protein CspB [Bacillus cereus 03BB102]
 gi|227002717|gb|ACP12460.1| cold shock protein CspB [Bacillus anthracis str. CDC 684]
 gi|228585836|gb|EEK43933.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|228591787|gb|EEK49627.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|228597728|gb|EEK55371.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
 gi|228603650|gb|EEK61124.1| Cold shock protein cspB [Bacillus cereus 172560W]
 gi|228621055|gb|EEK77918.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|228624303|gb|EEK81095.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
 gi|228631793|gb|EEK88421.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|228637444|gb|EEK93897.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|228643229|gb|EEK99502.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
 gi|228654697|gb|EEL10558.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
 gi|228660349|gb|EEL15982.1| Cold shock protein cspB [Bacillus cereus 95/8201]
 gi|228672541|gb|EEL27824.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
 gi|228690789|gb|EEL44564.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
 gi|228702476|gb|EEL54944.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
 gi|228711975|gb|EEL63924.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|228724165|gb|EEL75508.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|228773110|gb|EEM21545.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228779685|gb|EEM27936.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|228786235|gb|EEM34230.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228790229|gb|EEM37999.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228799854|gb|EEM46796.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228805773|gb|EEM52353.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228812401|gb|EEM58728.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228819127|gb|EEM65186.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228824713|gb|EEM70514.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228831088|gb|EEM76688.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228837301|gb|EEM82635.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228843350|gb|EEM88428.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228847517|gb|EEM92456.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|228857593|gb|EEN02088.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|229264936|gb|ACQ46573.1| cold shock protein CspB [Bacillus anthracis str. A0248]
 gi|296325096|gb|ADH08024.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|298724998|gb|EFI65658.1| cold shock protein CspB [Bacillus cereus SJ1]
 gi|300377194|gb|ADK06098.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
 gi|324327436|gb|ADY22696.1| cold shock protein CspB [Bacillus thuringiensis serovar finitimus
          YBT-020]
 gi|326941254|gb|AEA17150.1| cold shock protein [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 66

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ VT++  Q +
Sbjct: 1  MQNGKVKWFNSEKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN 55


>gi|301056652|ref|YP_003794863.1| cold shock protein [Bacillus anthracis CI]
 gi|300378821|gb|ADK07725.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
          Length = 67

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N +KG+GFI      E G+DVF+H SA+   G  +L EGQ V +D V + 
Sbjct: 1  MNMQGRVKWFNAEKGFGFI----EREDGEDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55

Query: 61 ANGKYSAENLKL 72
          A G  +A  +KL
Sbjct: 56 ARGPQAANVVKL 67


>gi|149928086|ref|ZP_01916333.1| Cold-shock DNA-binding domain protein [Limnobacter sp. MED105]
 gi|149823172|gb|EDM82409.1| Cold-shock DNA-binding domain protein [Limnobacter sp. MED105]
          Length = 73

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 5/73 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   +  D++F H SA+ ++G   L EGQ VT++ V  D    
Sbjct: 4  GTVKWFNDAKGFGFITPD---QGSDELFAHFSAIQASGFRTLKEGQKVTFEVV--DGPKG 58

Query: 65 YSAENLKLVPKSS 77
            A+N+ ++  +S
Sbjct: 59 KQAQNISVMDATS 71


>gi|147856673|emb|CAN81359.1| hypothetical protein VITISV_040408 [Vitis vinifera]
          Length = 219

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + GDD+F+H+S++ S G  +L EG+ V +  V++  +G+
Sbjct: 6  GTVKWFNDQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDGR 61

Query: 65 YSA 67
            A
Sbjct: 62 TKA 64


>gi|30022927|ref|NP_834558.1| cold shock protein [Bacillus cereus ATCC 14579]
 gi|30264924|ref|NP_847301.1| cold shock protein CspD [Bacillus anthracis str. Ames]
 gi|42784065|ref|NP_981312.1| cold shock protein CspD [Bacillus cereus ATCC 10987]
 gi|47530419|ref|YP_021768.1| cold shock protein CspD [Bacillus anthracis str. 'Ames Ancestor']
 gi|47568038|ref|ZP_00238744.1| cold-shock domain family protein-related protein [Bacillus cereus
          G9241]
 gi|49187745|ref|YP_030998.1| cold shock protein CspD [Bacillus anthracis str. Sterne]
 gi|49478797|ref|YP_038904.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|52140641|ref|YP_086189.1| cold shock protein [Bacillus cereus E33L]
 gi|65322228|ref|ZP_00395187.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012]
 gi|118479979|ref|YP_897130.1| cold-shock DNA-binding protein family protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|165869712|ref|ZP_02214370.1| cold shock protein CspD [Bacillus anthracis str. A0488]
 gi|167633815|ref|ZP_02392138.1| cold shock protein CspD [Bacillus anthracis str. A0442]
 gi|167637994|ref|ZP_02396272.1| cold shock protein CspD [Bacillus anthracis str. A0193]
 gi|170685769|ref|ZP_02876992.1| cold shock protein CspD [Bacillus anthracis str. A0465]
 gi|170705396|ref|ZP_02895860.1| cold shock protein CspD [Bacillus anthracis str. A0389]
 gi|177651104|ref|ZP_02933935.1| cold shock protein CspD [Bacillus anthracis str. A0174]
 gi|190567127|ref|ZP_03020042.1| cold shock protein CspD [Bacillus anthracis Tsiankovskii-I]
 gi|196032813|ref|ZP_03100226.1| cold shock protein CspD [Bacillus cereus W]
 gi|196041478|ref|ZP_03108771.1| cold shock protein CspD [Bacillus cereus NVH0597-99]
 gi|196044044|ref|ZP_03111281.1| cold shock protein CspD [Bacillus cereus 03BB108]
 gi|206969776|ref|ZP_03230730.1| cold shock protein CspD [Bacillus cereus AH1134]
 gi|206977004|ref|ZP_03237905.1| cold shock protein CspD [Bacillus cereus H3081.97]
 gi|217962350|ref|YP_002340922.1| cold shock protein CspD [Bacillus cereus AH187]
 gi|218234055|ref|YP_002369674.1| cold shock protein CspD [Bacillus cereus B4264]
 gi|218906084|ref|YP_002453918.1| cold shock protein CspD [Bacillus cereus AH820]
 gi|222098335|ref|YP_002532392.1| cold shock protein [Bacillus cereus Q1]
 gi|225866859|ref|YP_002752237.1| cold shock protein CspD [Bacillus cereus 03BB102]
 gi|227817655|ref|YP_002817664.1| cold shock protein CspD [Bacillus anthracis str. CDC 684]
 gi|228917511|ref|ZP_04081060.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228923616|ref|ZP_04086896.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228929909|ref|ZP_04092924.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228936170|ref|ZP_04098973.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228948606|ref|ZP_04110885.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228955142|ref|ZP_04117156.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228961133|ref|ZP_04122759.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228988125|ref|ZP_04148224.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229048573|ref|ZP_04194133.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|229072368|ref|ZP_04205572.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|229082122|ref|ZP_04214595.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
 gi|229087391|ref|ZP_04219530.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
 gi|229093978|ref|ZP_04225069.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
 gi|229112327|ref|ZP_04241866.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
 gi|229124425|ref|ZP_04253613.1| Cold shock protein cspB [Bacillus cereus 95/8201]
 gi|229130142|ref|ZP_04259103.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
 gi|229141600|ref|ZP_04270132.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
 gi|229147434|ref|ZP_04275783.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|229153070|ref|ZP_04281251.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|229158481|ref|ZP_04286542.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
 gi|229181180|ref|ZP_04308512.1| Cold shock protein cspB [Bacillus cereus 172560W]
 gi|229187123|ref|ZP_04314271.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
 gi|229193146|ref|ZP_04320101.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|229199032|ref|ZP_04325717.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|229601378|ref|YP_002869129.1| cold shock protein CspD [Bacillus anthracis str. A0248]
 gi|254687666|ref|ZP_05151522.1| cold shock protein CspD [Bacillus anthracis str. CNEVA-9066]
 gi|254725230|ref|ZP_05187013.1| cold shock protein CspD [Bacillus anthracis str. A1055]
 gi|254736972|ref|ZP_05194678.1| cold shock protein CspD [Bacillus anthracis str. Western North
          America USA6153]
 gi|254742006|ref|ZP_05199693.1| cold shock protein CspD [Bacillus anthracis str. Kruger B]
 gi|254754395|ref|ZP_05206430.1| cold shock protein CspD [Bacillus anthracis str. Vollum]
 gi|254757227|ref|ZP_05209254.1| cold shock protein CspD [Bacillus anthracis str. Australia 94]
 gi|296505326|ref|YP_003667026.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|301056373|ref|YP_003794584.1| cold shock protein [Bacillus anthracis CI]
 gi|49035522|sp|Q816H3|CSPD_BACCR RecName: Full=Cold shock-like protein CspD
 gi|49035525|sp|Q81K90|CSPD_BACAN RecName: Full=Cold shock-like protein CspD
 gi|29898486|gb|AAP11759.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gi|30259599|gb|AAP28787.1| cold shock protein CspD [Bacillus anthracis str. Ames]
 gi|30408066|gb|AAP30080.1| CspD [Bacillus thuringiensis]
 gi|42739996|gb|AAS43920.1| cold shock protein CspD [Bacillus cereus ATCC 10987]
 gi|47505567|gb|AAT34243.1| cold shock protein CspD [Bacillus anthracis str. 'Ames Ancestor']
 gi|47555341|gb|EAL13686.1| cold-shock domain family protein-related protein [Bacillus cereus
          G9241]
 gi|49181672|gb|AAT57048.1| cold shock protein CspD [Bacillus anthracis str. Sterne]
 gi|49330353|gb|AAT60999.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|51974110|gb|AAU15660.1| cold shock protein [Bacillus cereus E33L]
 gi|57020677|gb|AAW32928.1| cold-shock protein D [Bacillus thuringiensis]
 gi|118419204|gb|ABK87623.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
          str. Al Hakam]
 gi|164714541|gb|EDR20060.1| cold shock protein CspD [Bacillus anthracis str. A0488]
 gi|167513811|gb|EDR89179.1| cold shock protein CspD [Bacillus anthracis str. A0193]
 gi|167530616|gb|EDR93318.1| cold shock protein CspD [Bacillus anthracis str. A0442]
 gi|170129521|gb|EDS98384.1| cold shock protein CspD [Bacillus anthracis str. A0389]
 gi|170670233|gb|EDT20973.1| cold shock protein CspD [Bacillus anthracis str. A0465]
 gi|172082930|gb|EDT67992.1| cold shock protein CspD [Bacillus anthracis str. A0174]
 gi|190561631|gb|EDV15601.1| cold shock protein CspD [Bacillus anthracis Tsiankovskii-I]
 gi|195994242|gb|EDX58197.1| cold shock protein CspD [Bacillus cereus W]
 gi|196025380|gb|EDX64050.1| cold shock protein CspD [Bacillus cereus 03BB108]
 gi|196027726|gb|EDX66340.1| cold shock protein CspD [Bacillus cereus NVH0597-99]
 gi|206735464|gb|EDZ52632.1| cold shock protein CspD [Bacillus cereus AH1134]
 gi|206744809|gb|EDZ56215.1| cold shock protein CspD [Bacillus cereus H3081.97]
 gi|217066836|gb|ACJ81086.1| cold shock protein CspD [Bacillus cereus AH187]
 gi|218162012|gb|ACK62004.1| cold shock protein CspD [Bacillus cereus B4264]
 gi|218537043|gb|ACK89441.1| cold shock protein CspD [Bacillus cereus AH820]
 gi|221242393|gb|ACM15103.1| cold shock protein [Bacillus cereus Q1]
 gi|225785799|gb|ACO26016.1| cold shock protein CspD [Bacillus cereus 03BB102]
 gi|227007679|gb|ACP17422.1| cold shock protein CspD [Bacillus anthracis str. CDC 684]
 gi|228584445|gb|EEK42578.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|228590410|gb|EEK48274.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|228596364|gb|EEK54036.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
 gi|228602371|gb|EEK59860.1| Cold shock protein cspB [Bacillus cereus 172560W]
 gi|228625000|gb|EEK81766.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
 gi|228630490|gb|EEK87138.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|228636116|gb|EEK92597.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|228641880|gb|EEK98179.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
 gi|228653357|gb|EEL09234.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
 gi|228659077|gb|EEL14729.1| Cold shock protein cspB [Bacillus cereus 95/8201]
 gi|228671167|gb|EEL26472.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
 gi|228689460|gb|EEL43274.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
 gi|228695920|gb|EEL48766.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
 gi|228701187|gb|EEL53700.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
 gi|228710793|gb|EEL62764.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|228722775|gb|EEL74160.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|228771623|gb|EEM20090.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228798576|gb|EEM45563.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228804553|gb|EEM51158.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228811105|gb|EEM57447.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228823515|gb|EEM69344.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228829825|gb|EEM75447.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228836085|gb|EEM81446.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228842183|gb|EEM87282.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229265786|gb|ACQ47423.1| cold shock protein CspD [Bacillus anthracis str. A0248]
 gi|296326378|gb|ADH09306.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|300378542|gb|ADK07446.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
 gi|324328763|gb|ADY24023.1| cold shock protein CspD [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 66

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 1  MQTGKVKWFNSEKGFGFIEVEG----GDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGN 55


>gi|292670014|ref|ZP_06603440.1| cold shock protein [Selenomonas noxia ATCC 43541]
 gi|292648315|gb|EFF66287.1| cold shock protein [Selenomonas noxia ATCC 43541]
          Length = 66

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++ DKGYGFI    S E GDDVF+H S++   G   L+EGQ V +D V+
Sbjct: 3  GKVKWFSADKGYGFI----SREDGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVE 52


>gi|258645332|ref|ZP_05732801.1| putative cold shock protein [Dialister invisus DSM 15470]
 gi|260402681|gb|EEW96228.1| putative cold shock protein [Dialister invisus DSM 15470]
          Length = 66

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++ DKG+GFI      E G DVF+H SA+ + G   L+EGQ V +D + + A G
Sbjct: 2  KGTVKWFSADKGFGFI----EREEGGDVFVHYSAIQTEGFKTLSEGQKVDFDII-DGARG 56

Query: 64 KYSAENLKLV 73
            +A N+K+V
Sbjct: 57 PQAA-NVKVV 65


>gi|269954913|ref|YP_003324702.1| cold-shock DNA-binding domain-containing protein [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269303594|gb|ACZ29144.1| cold-shock DNA-binding domain protein [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 67

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI PE  ++   DVF H SA+ + G   L EGQ V +D  Q      
Sbjct: 4  GTVKWFNAEKGYGFIAPEDGSQ---DVFAHYSAIQTNGYRTLEEGQRVEFDTAQGPKG-- 58

Query: 65 YSAENLKLV 73
            AEN++ +
Sbjct: 59 LQAENIRAL 67


>gi|226310435|ref|YP_002770329.1| cold shock protein [Brevibacillus brevis NBRC 100599]
 gi|226093383|dbj|BAH41825.1| cold shock protein [Brevibacillus brevis NBRC 100599]
          Length = 66

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ VT+D  Q
Sbjct: 1  MEQGTVKWFNAEKGFGFIEREGK----EDVFVHFSAIQGDGFKSLDEGQKVTFDVEQ 53


>gi|225427973|ref|XP_002277628.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 214

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + GDD+F+H+S++ S G  +L EG+ V +  V++  +G+
Sbjct: 6  GTVKWFNDQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDGR 61

Query: 65 YSA 67
            A
Sbjct: 62 TKA 64


>gi|71909004|ref|YP_286591.1| cold-shock DNA-binding protein family protein [Dechloromonas
          aromatica RCB]
 gi|71848625|gb|AAZ48121.1| cold-shock DNA-binding protein family [Dechloromonas aromatica
          RCB]
          Length = 68

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI+P   +E G+D+F H SA+   G   L E Q VT+D V N   GK
Sbjct: 4  GTVKWFNDSKGFGFISP---SEGGEDLFAHFSAIQGNGFKTLAENQKVTFDVV-NGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|146281647|ref|YP_001171800.1| cold shock protein CapB [Pseudomonas stutzeri A1501]
 gi|145569852|gb|ABP78958.1| cold shock protein CapB [Pseudomonas stutzeri A1501]
 gi|327479894|gb|AEA83204.1| cold shock protein CapB [Pseudomonas stutzeri DSM 4166]
          Length = 69

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFITP    +SGDD+F+H  A+   G  +L EGQ V+  +V       
Sbjct: 7  GTVKWFNDEKGFGFITP----QSGDDLFVHFRAIQGDGFKSLKEGQQVS--FVATRGQKG 60

Query: 65 YSAENLKLV 73
            AE ++++
Sbjct: 61 MQAEEVQVI 69


>gi|119386361|ref|YP_917416.1| cold-shock DNA-binding domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119376956|gb|ABL71720.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
          PD1222]
          Length = 80

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P      G DVF+H SA+  A + +L +GQ V+++ ++   +G+
Sbjct: 16 GTVKWFNATKGFGFIAP---ANGGKDVFVHISALERANISHLADGQAVSFE-IETGRDGR 71

Query: 65 YSAENLKLV 73
           SA +L L 
Sbjct: 72 QSARDLALA 80


>gi|324998904|ref|ZP_08120016.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          sp. P1]
          Length = 67

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G++KW+N +KGYGF+ P+G    G DVF+H SA+ + G   L EGQ V++D  Q 
Sbjct: 3  EGTVKWFNSEKGYGFLAPDG---GGADVFVHYSAIQTQGYKTLDEGQRVSFDIEQG 55


>gi|332686444|ref|YP_004456218.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311]
 gi|332370453|dbj|BAK21409.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311]
          Length = 66

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N DKG+GFIT     E+G+DVF+H SA+   G   L EG  VT+D
Sbjct: 1  METGTVKWFNSDKGFGFITA----ENGNDVFVHFSAIQGDGFKTLEEGHTVTFD 50


>gi|253574512|ref|ZP_04851853.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
          sp. oral taxon 786 str. D14]
 gi|251846217|gb|EES74224.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
          sp. oral taxon 786 str. D14]
          Length = 66

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ V ++ VQ   N  
Sbjct: 4  GTVKWFNAEKGFGFIEVEG----GNDVFVHFSAITGEGFKTLDEGQRVQFNVVQ--GNRG 57

Query: 65 YSAENL 70
            AEN+
Sbjct: 58 PQAENV 63


>gi|222153840|ref|YP_002563017.1| cold shock protein [Streptococcus uberis 0140J]
 gi|222114653|emb|CAR43704.1| cold shock protein [Streptococcus uberis 0140J]
          Length = 67

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI    STE G + F H SA+ + G   L EGQ VT+D V  D + 
Sbjct: 3  QGTVKWFNAEKGFGFI----STEEGQEYFAHFSAIQTKGYKTLDEGQQVTFDIV--DGHR 56

Query: 64 KYSAENLKLVP 74
             A N+  +P
Sbjct: 57 GLQAVNITKLP 67


>gi|251783434|ref|YP_002997739.1| cold shock protein [Streptococcus dysgalactiae subsp. equisimilis
          GGS_124]
 gi|242392066|dbj|BAH82525.1| cold shock protein [Streptococcus dysgalactiae subsp. equisimilis
          GGS_124]
          Length = 69

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI    STE+G DVF H SA+ + G   L EGQ V +D
Sbjct: 5  QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVEFD 52


>gi|228992244|ref|ZP_04152177.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
 gi|228998299|ref|ZP_04157894.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|229005782|ref|ZP_04163480.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
 gi|228755458|gb|EEM04805.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
 gi|228761451|gb|EEM10402.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|228767497|gb|EEM16127.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
          Length = 66

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ VT++  Q +
Sbjct: 1  MQNGKVKWFNSEKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN 55


>gi|139474525|ref|YP_001129241.1| cold shock protein [Streptococcus pyogenes str. Manfredo]
 gi|134272772|emb|CAM31047.1| cold shock protein [Streptococcus pyogenes str. Manfredo]
          Length = 67

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI    STE+G D+F H SA+ + G   L EGQ V +D
Sbjct: 3  QGTVKWFNAEKGFGFI----STENGQDIFAHFSAIQTNGFKTLEEGQKVAFD 50


>gi|238927666|ref|ZP_04659426.1| major cold shock protein [Selenomonas flueggei ATCC 43531]
 gi|238884382|gb|EEQ48020.1| major cold shock protein [Selenomonas flueggei ATCC 43531]
          Length = 88

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++ DKGYGFI    S E GDDVF+H S++   G   L+EGQ V +D V+
Sbjct: 25 GKVKWFSADKGYGFI----SREDGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVE 74


>gi|229917667|ref|YP_002886313.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b]
 gi|229469096|gb|ACQ70868.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b]
          Length = 66

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G +KW+N +KGYGFI  EG    GDDVF+H SA+   G   L EGQ VT++
Sbjct: 1  MNTGKVKWFNSEKGYGFIEMEG----GDDVFVHFSAIQGDGFKTLEEGQEVTFE 50


>gi|172057694|ref|YP_001814154.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|172057696|ref|YP_001814156.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|171990215|gb|ACB61137.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
          255-15]
 gi|171990217|gb|ACB61139.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
          255-15]
          Length = 66

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G +KW+N +KG+GFI      ESGDDVF+H SA+ + G  +L EGQ V+++
Sbjct: 1  MEQGKVKWFNAEKGFGFI----ERESGDDVFVHFSAIQTDGFKSLDEGQEVSFE 50


>gi|257790734|ref|YP_003181340.1| cold-shock DNA-binding domain-containing protein [Eggerthella
          lenta DSM 2243]
 gi|257474631|gb|ACV54951.1| cold-shock DNA-binding domain protein [Eggerthella lenta DSM
          2243]
          Length = 67

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+NP+KGYGFI    S + G+D+F+H S +   G   L EG  V +D V    NG
Sbjct: 3  EGTVKWFNPEKGYGFI----SQKDGEDLFVHFSEIKMDGFKTLDEGSAVQFD-VTTGQNG 57

Query: 64 KYSAENL 70
          K  A N+
Sbjct: 58 KLQASNV 64


>gi|187250904|ref|YP_001875386.1| cold-shock DNA-binding domain-containing protein [Elusimicrobium
          minutum Pei191]
 gi|186971064|gb|ACC98049.1| Cold-shock DNA-binding domain protein [Elusimicrobium minutum
          Pei191]
          Length = 66

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KGYGF+TPE  ++   D+F+H   +   G   L+EGQ V +D V++D   
Sbjct: 3  KGKVKWFNDQKGYGFVTPEDGSK---DLFVHYQEIKGEGFKTLSEGQEVEFDIVESDKGP 59

Query: 64 K 64
          K
Sbjct: 60 K 60


>gi|328472753|gb|EGF43604.1| hypothetical protein LM220_15640 [Listeria monocytogenes 220]
          Length = 72

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ V ++ V+
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVEG----GDDVFVHFSAIEGEGFKTLDEGQSVEFEIVE 53


>gi|308071085|ref|YP_003872690.1| Cold shock-like protein cspC [Paenibacillus polymyxa E681]
 gi|305860364|gb|ADM72152.1| Cold shock-like protein cspC [Paenibacillus polymyxa E681]
          Length = 65

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     T  G DVF+H SA+ + G   L EGQ V +D V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFI----ETSDGGDVFVHFSAIQTEGFKTLEEGQDVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 57 PQAANVTKL 65


>gi|297537796|ref|YP_003673565.1| cold-shock DNA-binding domain-containing protein [Methylotenera
          sp. 301]
 gi|297257143|gb|ADI28988.1| cold-shock DNA-binding domain protein [Methylotenera sp. 301]
          Length = 67

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + GDD+F H SA+  AG  +L EGQ V+++ V +   GK
Sbjct: 4  GTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVEAGYKSLKEGQRVSFE-VTDGPKGK 59

Query: 65 YSAENLK 71
            A N++
Sbjct: 60 -QASNIQ 65


>gi|325983251|ref|YP_004295653.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
          sp. AL212]
 gi|325532770|gb|ADZ27491.1| cold-shock DNA-binding domain protein [Nitrosomonas sp. AL212]
          Length = 67

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 7/71 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G+D+F H SA++S G  +L E Q VT+D +     GK
Sbjct: 4  GTVKWFNDSKGFGFITPD---DGGEDIFAHFSAISSGGYKSLREAQRVTFD-ITTGPKGK 59

Query: 65 YSAENLKLVPK 75
           ++    +VP+
Sbjct: 60 QASN---IVPQ 67


>gi|23004357|ref|ZP_00047730.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 67

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI PE   +   DVF H SA+ S G   L E Q V +D  Q     +
Sbjct: 4  GTVKWFNSEKGYGFIAPE---DGSADVFAHYSAIQSQGFRTLEENQRVEFDVTQGPKGPQ 60

Query: 65 YSAENLKLV 73
            AEN++ V
Sbjct: 61 --AENIRPV 67


>gi|293375824|ref|ZP_06622094.1| major cold shock protein CspA [Turicibacter sanguinis PC909]
 gi|325838578|ref|ZP_08166579.1| cold shock protein CspB [Turicibacter sp. HGF1]
 gi|292645601|gb|EFF63641.1| major cold shock protein CspA [Turicibacter sanguinis PC909]
 gi|325490804|gb|EGC93107.1| cold shock protein CspB [Turicibacter sp. HGF1]
          Length = 66

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFIT +G    G+DVF H SA+   G   L EGQ V+++ V+ +  G 
Sbjct: 4  GTVKWFNAEKGFGFITVDG----GNDVFAHFSAITGEGFKTLEEGQKVSFEIVEGN-RGP 58

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 59 QAANIVKL 66


>gi|325962239|ref|YP_004240145.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323468326|gb|ADX72011.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 68

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          RG+++W+N +KGYGFIT +G   SGDDVF+H SA+   G   L EGQ V  +
Sbjct: 3  RGTVRWFNAEKGYGFITVDG---SGDDVFVHWSAIQGEGYRALDEGQRVELE 51


>gi|310829807|ref|YP_003962164.1| cold-shock protein [Eubacterium limosum KIST612]
 gi|308741541|gb|ADO39201.1| cold-shock protein [Eubacterium limosum KIST612]
          Length = 66

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N DKG+GFI    S E GDDVF+H S++   G   L EG  V++D  Q
Sbjct: 1  MNNGTVKWFNSDKGFGFI----SREEGDDVFVHFSSIMGGGFKTLNEGDKVSFDIEQ 53


>gi|294668449|ref|ZP_06733549.1| hypothetical protein NEIELOOT_00364 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291309602|gb|EFE50845.1| hypothetical protein NEIELOOT_00364 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 67

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+   E GDD+F H SA+   G   L EGQ V++D
Sbjct: 4  GTVKWFNDAKGFGFITPD---EGGDDLFAHFSAINMEGFKTLKEGQKVSFD 51


>gi|229544073|ref|ZP_04433132.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
 gi|229325212|gb|EEN90888.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
          Length = 66

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G +KW+N +KGYGFI  EG    G DVF+H SA+   G   L EGQ V++D
Sbjct: 1  MEQGKVKWFNSEKGYGFIEREG----GSDVFVHFSAIQGEGFKTLEEGQSVSFD 50


>gi|325923004|ref|ZP_08184708.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
          19865]
 gi|325546512|gb|EGD17662.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
          19865]
          Length = 69

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQ 56


>gi|303257728|ref|ZP_07343740.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47]
 gi|303257776|ref|ZP_07343787.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47]
 gi|331000987|ref|ZP_08324623.1| putative cold shock domain protein CspD [Parasutterella
          excrementihominis YIT 11859]
 gi|302859458|gb|EFL82538.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47]
 gi|302859698|gb|EFL82777.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47]
 gi|329569762|gb|EGG51526.1| putative cold shock domain protein CspD [Parasutterella
          excrementihominis YIT 11859]
          Length = 67

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFITP+   + G+D+F H SA+   G   L +GQ VT+D  + +  GK
Sbjct: 4  GTVKWFNDAKGYGFITPD---DGGEDLFAHFSAIKMDGFKTLKQGQRVTFDLKEGE-KGK 59

Query: 65 YSAENLK 71
            A+N+K
Sbjct: 60 -QADNIK 65


>gi|21230743|ref|NP_636660.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          ATCC 33913]
 gi|21242090|ref|NP_641672.1| cold shock protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|66769261|ref|YP_244023.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          8004]
 gi|78046945|ref|YP_363120.1| cold shock protein [Xanthomonas campestris pv. vesicatoria str.
          85-10]
 gi|84623422|ref|YP_450794.1| cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|166712821|ref|ZP_02244028.1| cold shock protein [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|188577268|ref|YP_001914197.1| hypothetical protein PXO_01731 [Xanthomonas oryzae pv. oryzae
          PXO99A]
 gi|188992412|ref|YP_001904422.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          B100]
 gi|289662812|ref|ZP_06484393.1| cold shock protein [Xanthomonas campestris pv. vasculorum
          NCPPB702]
 gi|289670308|ref|ZP_06491383.1| cold shock protein [Xanthomonas campestris pv. musacearum
          NCPPB4381]
 gi|325915841|ref|ZP_08178140.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325926981|ref|ZP_08188256.1| cold-shock DNA-binding protein family [Xanthomonas perforans
          91-118]
 gi|21107498|gb|AAM36208.1| cold shock protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21112338|gb|AAM40584.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          ATCC 33913]
 gi|66574593|gb|AAY50003.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          8004]
 gi|78035375|emb|CAJ23020.1| cold shock protein [Xanthomonas campestris pv. vesicatoria str.
          85-10]
 gi|84367362|dbj|BAE68520.1| cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|167734172|emb|CAP52380.1| cold shock protein [Xanthomonas campestris pv. campestris]
 gi|188521720|gb|ACD59665.1| conserved domain protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|325537962|gb|EGD09659.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325542640|gb|EGD14107.1| cold-shock DNA-binding protein family [Xanthomonas perforans
          91-118]
          Length = 68

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+PE   +   DVF H SA+ S G  +L EGQ V+YD  Q
Sbjct: 4  GTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVSYDVTQ 54


>gi|323467067|gb|ADX70754.1| cold shock-like protein, CspA family [Lactobacillus helveticus
          H10]
          Length = 66

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 8/74 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT  GS   G DVF+H S++ + G  +L EGQ V+YD  Q   
Sbjct: 1  MQNGTVKWFNADKGFGFIT--GS--DGTDVFVHFSSIKTDGFKSLEEGQKVSYDVEQ--- 53

Query: 62 NGKYSAENLKLVPK 75
           G+   +   +VP+
Sbjct: 54 -GRRGPQATNVVPQ 66


>gi|320012608|gb|ADW07458.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
          Length = 67

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H SA+ + G   L EGQ VT+D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIQQDGG---GPDVFAHYSAINATGFRELQEGQAVTFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|154250399|ref|YP_001411224.1| cold-shock DNA-binding domain-containing protein
          [Fervidobacterium nodosum Rt17-B1]
 gi|154154335|gb|ABS61567.1| putative cold-shock DNA-binding domain protein [Fervidobacterium
          nodosum Rt17-B1]
          Length = 66

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KGYGFIT     E+G DVF+H SA+   G   L EG  V +D +QN   G
Sbjct: 2  KGTVKWFDSSKGYGFITG----ENGQDVFVHFSAIQMDGFKTLKEGDKVEFD-IQNGQKG 56

Query: 64 KYSAENLKLV 73
            +A N+KLV
Sbjct: 57 PQAA-NVKLV 65


>gi|150378053|ref|YP_001314648.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|150032600|gb|ABR64715.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
          Length = 67

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++  DKG+GFITP+     G DVF+H SA+  AG  +L +GQ V+Y+  Q+   GK
Sbjct: 4  GTVKFFAQDKGFGFITPD---SGGPDVFVHISALGFAG--SLQDGQKVSYELGQDRKTGK 58

Query: 65 YSAENL 70
            AEN+
Sbjct: 59 SKAENV 64


>gi|306821247|ref|ZP_07454861.1| cold shock protein CspA [Eubacterium yurii subsp. margaretiae
          ATCC 43715]
 gi|304550759|gb|EFM38736.1| cold shock protein CspA [Eubacterium yurii subsp. margaretiae
          ATCC 43715]
          Length = 65

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  EG    GDDVF+H SA+ + G   L EGQ V ++ + + A G 
Sbjct: 3  GKVKWFNAEKGFGFIEREG----GDDVFVHFSAIQTDGFKTLDEGQNVEFE-ITDGARGP 57

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 58 QAANVVKL 65


>gi|317471073|ref|ZP_07930446.1| cold-shock DNA-binding domain-containing protein [Anaerostipes
          sp. 3_2_56FAA]
 gi|316901441|gb|EFV23382.1| cold-shock DNA-binding domain-containing protein [Anaerostipes
          sp. 3_2_56FAA]
          Length = 64

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFIT E    +G+DVF+H S +A+ G  +L +GQ VT++  Q +
Sbjct: 1  GTVKWFNSTKGFGFITNE---STGEDVFVHFSGIAAEGFKSLEDGQKVTFETTQGN 53


>gi|295426499|ref|ZP_06819149.1| cold shock protein CspA [Lactobacillus amylolyticus DSM 11664]
 gi|295063867|gb|EFG54825.1| cold shock protein CspA [Lactobacillus amylolyticus DSM 11664]
          Length = 66

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N D+G+GFIT  GS   G DVF+H S++ + G  +L EGQ V+YD  Q D
Sbjct: 1  MQNGTVKWFNADRGFGFIT--GS--DGKDVFVHFSSIKTNGFKSLEEGQKVSYDVEQED 55


>gi|71725903|gb|AAZ39070.1| cold shock protein [Exiguobacterium acetylicum]
          Length = 67

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 5/63 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI      ESGDDVF+H SA+ S G  +L EGQ V+++ V+    G 
Sbjct: 4  GKVKWFNSEKGFGFI----ERESGDDVFVHFSAIQSEGFKSLDEGQEVSFE-VEEGQRGP 58

Query: 65 YSA 67
           +A
Sbjct: 59 QAA 61


>gi|317488560|ref|ZP_07947105.1| cold-shock' DNA-binding domain-containing protein [Eggerthella
          sp. 1_3_56FAA]
 gi|325832026|ref|ZP_08165123.1| cold shock protein CspB [Eggerthella sp. HGA1]
 gi|316912302|gb|EFV33866.1| cold-shock' DNA-binding domain-containing protein [Eggerthella
          sp. 1_3_56FAA]
 gi|325486347|gb|EGC88799.1| cold shock protein CspB [Eggerthella sp. HGA1]
          Length = 67

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+NP+KGYGFI    S + G+D+F+H S +   G   L EG  V +D V    NG
Sbjct: 3  EGTVKWFNPEKGYGFI----SQKDGEDLFVHFSEIKMDGFKTLDEGAAVQFD-VTTGQNG 57

Query: 64 KYSAENL 70
          K  A N+
Sbjct: 58 KLQASNV 64


>gi|310641348|ref|YP_003946106.1| cold shock-like protein cspb [Paenibacillus polymyxa SC2]
 gi|309246298|gb|ADO55865.1| Cold shock-like protein cspB [Paenibacillus polymyxa SC2]
          Length = 65

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI  EG    G+DVF+H SA+   G   L EGQ V ++  + +  G
Sbjct: 2  KGTVKWFNAEKGYGFIQVEG----GEDVFVHFSAIQGDGFKTLEEGQEVEFEITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|228905155|ref|ZP_04069162.1| hypothetical protein bthur0014_62460 [Bacillus thuringiensis IBL
          4222]
 gi|229077228|ref|ZP_04209922.1| hypothetical protein bcere0024_58750 [Bacillus cereus Rock4-18]
 gi|228706059|gb|EEL58354.1| hypothetical protein bcere0024_58750 [Bacillus cereus Rock4-18]
 gi|228854477|gb|EEM99128.1| hypothetical protein bthur0014_62460 [Bacillus thuringiensis IBL
          4222]
          Length = 66

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N DKG+GFI  EG    G+DVF+H SA+   G  +L EGQ VT++  Q
Sbjct: 1  MEQGKVKWFNADKGFGFIEREG----GEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQ 53


>gi|266620956|ref|ZP_06113891.1| cold shock protein B [Clostridium hathewayi DSM 13479]
 gi|288867377|gb|EFC99675.1| cold shock protein B [Clostridium hathewayi DSM 13479]
          Length = 67

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 41/57 (71%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +++G++KW+N  KGYGFIT +   E+G++VF+H S + + G  +L +GQ VT+D  Q
Sbjct: 1  MNKGTVKWFNSSKGYGFITND---ETGEEVFVHFSGIMTDGYKSLEDGQKVTFDTTQ 54


>gi|197284696|ref|YP_002150568.1| cold shock protein [Proteus mirabilis HI4320]
 gi|227357693|ref|ZP_03842042.1| cold shock protein [Proteus mirabilis ATCC 29906]
 gi|194682183|emb|CAR41839.1| putative cold shock protein [Proteus mirabilis HI4320]
 gi|227162022|gb|EEI47036.1| cold shock protein [Proteus mirabilis ATCC 29906]
          Length = 70

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFITP+  ++   DVF+H SA+ S    +L EGQ V++  ++N A G 
Sbjct: 7  GTVKWFNDDKGFGFITPKDGSK---DVFVHFSAIQSDSFKSLKEGQEVSFS-IENGAKGP 62

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 63 AAANVIGL 70


>gi|326789293|ref|YP_004307114.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
 gi|326540057|gb|ADZ81916.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
          Length = 65

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI    S E GDDVF+H SA+   G  +L EGQ V +D  +  A G 
Sbjct: 3  GTVKWFNAEKGFGFI----SREDGDDVFVHFSAIQGDGFKSLDEGQRVNFDITKG-ARGA 57

Query: 65 YSAENL 70
            AEN+
Sbjct: 58 -QAENV 62


>gi|294011151|ref|YP_003544611.1| cold shock protein CspA [Sphingobium japonicum UT26S]
 gi|292674481|dbj|BAI95999.1| cold shock protein CspA [Sphingobium japonicum UT26S]
          Length = 70

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKGYGFI P+   +   D F+H SAV   GL  L E   V+YD ++ D  GK
Sbjct: 5  GTVKFFNADKGYGFIAPD---DGSPDAFVHISAVERGGLATLREKDRVSYD-LEQDKRGK 60

Query: 65 YSAENLK 71
           +A N++
Sbjct: 61 MAAVNIQ 67


>gi|291296663|ref|YP_003508061.1| cold-shock DNA-binding domain-containing protein [Meiothermus
          ruber DSM 1279]
 gi|290471622|gb|ADD29041.1| cold-shock DNA-binding domain protein [Meiothermus ruber DSM
          1279]
          Length = 68

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFI    + ESG DVF+H +A+   G  +L EG  V ++ ++   
Sbjct: 1  MNKGTVKWFNAEKGYGFI----AQESGPDVFVHFTAIQGQGFKSLNEGDRVEFE-IEPGK 55

Query: 62 NGK-YSAENLKLV 73
          NGK   A+N+KL 
Sbjct: 56 NGKGPQAKNVKLA 68


>gi|310644316|ref|YP_003949075.1| cold shock-like protein cspc [Paenibacillus polymyxa SC2]
 gi|309249267|gb|ADO58834.1| Cold shock-like protein cspC [Paenibacillus polymyxa SC2]
          Length = 65

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     T  G DVF+H SA+ + G   L EGQ V +D V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFI----ETADGGDVFVHFSAIQTEGFKTLEEGQDVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 57 PQAANVTKL 65


>gi|260102778|ref|ZP_05753015.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
 gi|260083418|gb|EEW67538.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
          Length = 67

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT  GS+++  DVF+H SA+ + G  +L EGQ V+YD  Q   
Sbjct: 1  MQTGTVKWFNADKGFGFIT--GSSDN-KDVFVHFSAIKTDGFKSLEEGQKVSYDVEQ--- 54

Query: 62 NGKYSAENLKLVPK 75
           G    +   +VP+
Sbjct: 55 -GSRGPQATNVVPQ 67


>gi|226227592|ref|YP_002761698.1| cold shock protein [Gemmatimonas aurantiaca T-27]
 gi|226090783|dbj|BAH39228.1| cold shock protein [Gemmatimonas aurantiaca T-27]
          Length = 69

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KG+GFITP   ++   D F+H SA+   G  +LTEG+ V +D VQ  
Sbjct: 1  MRTTGTVKWFNDAKGFGFITP---SDGQKDCFVHHSAIQGNGFKSLTEGETVEFDIVQGQ 57

Query: 61 ANGKYSAENL 70
               +AEN+
Sbjct: 58 KG--PAAENV 65


>gi|319653292|ref|ZP_08007394.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
 gi|317395213|gb|EFV75949.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
          Length = 66

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  EG  E G+DVF+H SA+ S G  +L EGQ V+++ V+  A G 
Sbjct: 4  GKVKWFNAEKGFGFI--EG--EDGNDVFVHYSAIQSEGFKSLEEGQEVSFEVVEG-ARGP 58

Query: 65 YSAENLKL 72
           +A   KL
Sbjct: 59 QAANVTKL 66


>gi|297562583|ref|YP_003681557.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296847031|gb|ADH69051.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 67

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI+P+G    G D F+H SA+   G  NL E Q V ++ VQ
Sbjct: 3  QGTVKWFNGEKGFGFISPDG---GGPDAFVHYSAIQGTGFRNLEENQRVEFEVVQ 54


>gi|297201136|ref|ZP_06918533.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|197713662|gb|EDY57696.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
          Length = 67

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ VT+D  Q    G+
Sbjct: 4  GTVKWFNAEKGFGFIEQDGG---GADVFAHYSNIATSGFRELQEGQKVTFDVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 57 KGPQAENIVP 66


>gi|190573988|ref|YP_001971833.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
 gi|194365403|ref|YP_002028013.1| cold-shock DNA-binding domain-containing protein
          [Stenotrophomonas maltophilia R551-3]
 gi|254524777|ref|ZP_05136832.1| putative 'Cold-shock' DNA-binding domain protein
          [Stenotrophomonas sp. SKA14]
 gi|190011910|emb|CAQ45531.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
 gi|194348207|gb|ACF51330.1| cold-shock DNA-binding domain protein [Stenotrophomonas
          maltophilia R551-3]
 gi|219722368|gb|EED40893.1| putative 'Cold-shock' DNA-binding domain protein
          [Stenotrophomonas sp. SKA14]
          Length = 69

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP    ESG D+F+H  A+   G   L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKTLQEGQKVTFIAVQ 56


>gi|1864167|gb|AAB48629.1| major cold-shock protein homolog CspB [Listeria monocytogenes]
          Length = 66

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N +KG+GFI  EG    GDD+F+H SA+   G   L EGQ V ++ V+
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVEG----GDDIFVHFSAIEGEGFKTLDEGQSVEFEIVE 53


>gi|304407201|ref|ZP_07388854.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304343642|gb|EFM09483.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 66

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI+ EG    G+DVF+H SA+   G  +L EGQ V ++ VQ +   +
Sbjct: 4  GTVKWFNAEKGFGFISVEG----GEDVFVHFSAIQGDGYKSLDEGQSVEFNIVQGNRGAQ 59

Query: 65 YSAENL 70
            AEN+
Sbjct: 60 --AENV 63


>gi|114776511|ref|ZP_01451556.1| Cold-shock protein, DNA-binding [Mariprofundus ferrooxydans PV-1]
 gi|114553341|gb|EAU55739.1| Cold-shock protein, DNA-binding [Mariprofundus ferrooxydans PV-1]
          Length = 67

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N  KG+GFI+ +   + GDDVF+H S++   G  +L EGQLV +D V+N A G
Sbjct: 4  GTVKWFNDTKGFGFISQD---DGGDDVFVHFSSIQGDGFKSLAEGQLVEFD-VENGAKG 58


>gi|253681971|ref|ZP_04862768.1| conserved domain protein [Clostridium botulinum D str. 1873]
 gi|253561683|gb|EES91135.1| conserved domain protein [Clostridium botulinum D str. 1873]
          Length = 65

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFIT    TE G+DVF H S +   G   L EGQ V++D V+  A G 
Sbjct: 3  GTVKWFNAEKGFGFIT----TEEGNDVFAHFSQINREGFKTLDEGQNVSFDVVEG-AKGP 57

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 58 -QAENITIL 65


>gi|326789721|ref|YP_004307542.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
 gi|326540485|gb|ADZ82344.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
          Length = 65

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N +KG+GFI  EG    GDDVF+H +A+   G   L EGQ V +D V+ +
Sbjct: 3  GKVKWFNAEKGFGFIEREG----GDDVFVHFTAIQGDGFKTLEEGQEVNFDIVEGN 54


>gi|229118682|ref|ZP_04248034.1| hypothetical protein bcere0017_49470 [Bacillus cereus Rock1-3]
 gi|228664874|gb|EEL20364.1| hypothetical protein bcere0017_49470 [Bacillus cereus Rock1-3]
          Length = 65

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E G+DVF+H SA+   G  +L EGQ V +D V + A G
Sbjct: 2  QGKVKWFNAEKGFGFI----EREDGEDVFVHFSAIQQDGYKSLEEGQQVKFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|167754667|ref|ZP_02426794.1| hypothetical protein CLORAM_00170 [Clostridium ramosum DSM 1402]
 gi|237733540|ref|ZP_04564021.1| cold shock DNA-binding protein [Mollicutes bacterium D7]
 gi|167705499|gb|EDS20078.1| hypothetical protein CLORAM_00170 [Clostridium ramosum DSM 1402]
 gi|229383373|gb|EEO33464.1| cold shock DNA-binding protein [Coprobacillus sp. D7]
          Length = 68

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N +KG+GFIT +   E G D+F+H SA+ + G   L EGQ+V +D  ++D
Sbjct: 4  GKVKWFNQEKGFGFITND---EDGKDIFVHFSAINAEGFKTLEEGQVVEFDINESD 56


>gi|15889479|ref|NP_355160.1| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|325293560|ref|YP_004279424.1| cold shock protein [Agrobacterium sp. H13-3]
 gi|15157349|gb|AAK87945.1| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|325061413|gb|ADY65104.1| cold shock protein [Agrobacterium sp. H13-3]
          Length = 71

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI P+     G D+F+H SAV ++GL  L+E Q V++D  + D
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPD---NGGADIFVHISAVQASGLSGLSENQKVSFD-TEPD 56

Query: 61 ANGK-YSAENLKL 72
            GK   A NL++
Sbjct: 57 RRGKGPKAVNLQI 69


>gi|114561918|ref|YP_749431.1| cold-shock DNA-binding domain-containing protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114333211|gb|ABI70593.1| cold-shock DNA-binding protein family [Shewanella frigidimarina
          NCIMB 400]
 gi|149675718|dbj|BAF64739.1| cold shock protein [Shewanella livingstonensis]
          Length = 70

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFITP+     G DVF+H  ++ S G   L EGQ V++D  Q
Sbjct: 7  GLVKWFNEDKGFGFITPD---NGGADVFVHFRSITSEGFKTLAEGQKVSFDVEQ 57


>gi|15617086|ref|NP_240299.1| cold shock protein CspE [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|21672738|ref|NP_660805.1| cold shock protein CspE [Buchnera aphidicola str. Sg (Schizaphis
          graminum)]
 gi|219681838|ref|YP_002468224.1| cold shock protein E [Buchnera aphidicola str. 5A (Acyrthosiphon
          pisum)]
 gi|219682393|ref|YP_002468777.1| cold shock protein E [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|257471542|ref|ZP_05635541.1| cold shock protein CspE [Buchnera aphidicola str. LSR1
          (Acyrthosiphon pisum)]
 gi|54036912|sp|P63237|CSPE_BUCAI RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|54036913|sp|P63238|CSPE_BUCAP RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|25296105|pir||A84987 cold shock-like protein cspE [imported] - Buchnera sp.  (strain
          APS)
 gi|10039151|dbj|BAB13185.1| cold shock-like protein cspE [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|21623383|gb|AAM68016.1| cold shock like protein CspE [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
 gi|219622126|gb|ACL30282.1| cold shock protein E [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|219624681|gb|ACL30836.1| cold shock protein E [Buchnera aphidicola str. 5A (Acyrthosiphon
          pisum)]
 gi|311086213|gb|ADP66295.1| cold shock protein CspE [Buchnera aphidicola str. LL01
          (Acyrthosiphon pisum)]
 gi|311086791|gb|ADP66872.1| cold shock protein CspE [Buchnera aphidicola str. TLW03
          (Acyrthosiphon pisum)]
 gi|311087378|gb|ADP67458.1| cold shock protein CspE [Buchnera aphidicola str. JF99
          (Acyrthosiphon pisum)]
 gi|311087874|gb|ADP67953.1| cold shock protein CspE [Buchnera aphidicola str. JF98
          (Acyrthosiphon pisum)]
          Length = 69

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++ +   A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQSVEFE-ITEGAKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVISL 69


>gi|172058938|ref|YP_001815398.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|171991459|gb|ACB62381.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
          255-15]
          Length = 66

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFI  EG    G+DVF+H SA+   G  +L EGQ V ++ +   A
Sbjct: 1  MNTGKVKWFNAEKGFGFIEVEG----GEDVFVHFSAITGEGFKSLDEGQEVEFE-ITEGA 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGAQAANVVKL 66


>gi|289640776|ref|ZP_06472947.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
 gi|289509352|gb|EFD30280.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
          Length = 67

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI+P+G +    DVF+H SA+A+ G   L E Q V +D  Q     
Sbjct: 3  QGTVKWFNAEKGFGFISPDGGS---PDVFVHFSAIATNGYKTLEENQRVEFDTTQGQKGP 59

Query: 64 KYSAENLK 71
          +  AEN++
Sbjct: 60 Q--AENVR 65


>gi|251810833|ref|ZP_04825306.1| cold shock protein CspA [Staphylococcus epidermidis BCM-HMP0060]
 gi|293366631|ref|ZP_06613308.1| cold shock protein CspA [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|251805668|gb|EES58325.1| cold shock protein CspA [Staphylococcus epidermidis BCM-HMP0060]
 gi|291319400|gb|EFE59769.1| cold shock protein CspA [Staphylococcus epidermidis
          M23864:W2(grey)]
          Length = 77

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D
Sbjct: 11 IMKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD 66

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 67 -RGPQAANVVKL 77


>gi|224542054|ref|ZP_03682593.1| hypothetical protein CATMIT_01228 [Catenibacterium mitsuokai DSM
          15897]
 gi|224524987|gb|EEF94092.1| hypothetical protein CATMIT_01228 [Catenibacterium mitsuokai DSM
          15897]
          Length = 67

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+  +KGYGFIT EG ++   D+F+H SA+ + G   L EGQ V +D V+ D
Sbjct: 3  GKVKWFKAEKGYGFITVEGQSK---DIFVHFSAINADGYKTLEEGQTVEFDVVEGD 55


>gi|205373573|ref|ZP_03226376.1| CspB [Bacillus coahuilensis m4-4]
          Length = 65

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +KW+N +KG+GFI  EG     DDVF+H SA+   G  +L EGQ V+++ V+ +
Sbjct: 3  QGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKSLEEGQEVSFEIVEGN 55


>gi|121631|sp|P27484|GRP2_NICSY RecName: Full=Glycine-rich protein 2
 gi|19743|emb|CAA42622.1| nsGRP-2 [Nicotiana sylvestris]
          Length = 214

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 47/67 (70%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KG+GFITP+   + G+D+F+H+S + S G  +L EG+ V ++ V++  +G
Sbjct: 10 KGTVKWFSDQKGFGFITPD---DGGEDLFVHQSGIRSEGFRSLAEGETVEFE-VESGGDG 65

Query: 64 KYSAENL 70
          +  A ++
Sbjct: 66 RTKAVDV 72


>gi|89097883|ref|ZP_01170770.1| cold shock protein [Bacillus sp. NRRL B-14911]
 gi|89087385|gb|EAR66499.1| cold shock protein [Bacillus sp. NRRL B-14911]
          Length = 66

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ G +KW+N +KG+GFI     T  G DVF+H SA+ S G  +L EG+ VT++ V+ +
Sbjct: 1  MNTGKVKWFNAEKGFGFI----ETSEGQDVFVHFSAIQSEGFKSLEEGEAVTFEIVEGN 55


>gi|110634483|ref|YP_674691.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
          BNC1]
 gi|110285467|gb|ABG63526.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
          Length = 70

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N  KG+GFITP+   +   DVF+H SAV ++G+ +L +GQ V++D V+ D
Sbjct: 1  MAQTGTVKFFNATKGFGFITPDNGQK---DVFVHISAVEASGMRSLVDGQKVSFD-VEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 RMGK 60


>gi|291613435|ref|YP_003523592.1| cold-shock DNA-binding domain protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291583547|gb|ADE11205.1| cold-shock DNA-binding domain protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 67

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+  +E   D+F H SA+  +G  +L EGQ VT++ VQ
Sbjct: 4  GTVKWFNDAKGFGFITPDDGSE---DLFAHFSAINMSGFKSLKEGQKVTFEVVQ 54


>gi|225848261|ref|YP_002728424.1| hypothetical protein SULAZ_0432 [Sulfurihydrogenibium azorense
          Az-Fu1]
 gi|225644220|gb|ACN99270.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 68

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KG+GFIT +   ++G D+F+H SA+   G  NL EGQ V ++ VQ +  G 
Sbjct: 5  GTVKWFDSKKGFGFITRD---DNGQDIFVHFSAIQGRGFKNLEEGQKVEFEIVQEE-KGP 60

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 61 RAANVVKL 68


>gi|184201878|ref|YP_001856085.1| cold shock protein [Kocuria rhizophila DC2201]
 gi|183582108|dbj|BAG30579.1| cold shock protein [Kocuria rhizophila DC2201]
          Length = 68

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFI PE   +  DDVF H S + S G  +L EG  V ++  Q D    
Sbjct: 4  GTVKWFNADKGFGFIAPE---DGSDDVFAHFSGINSGGFRSLNEGDKVEFEVQQGDRG-- 58

Query: 65 YSAENLKLV 73
            A N+ ++
Sbjct: 59 LQATNISVI 67


>gi|229099617|ref|ZP_04230545.1| hypothetical protein bcere0020_48350 [Bacillus cereus Rock3-29]
 gi|229105794|ref|ZP_04236423.1| hypothetical protein bcere0019_49200 [Bacillus cereus Rock3-28]
 gi|228677683|gb|EEL31931.1| hypothetical protein bcere0019_49200 [Bacillus cereus Rock3-28]
 gi|228683913|gb|EEL37863.1| hypothetical protein bcere0020_48350 [Bacillus cereus Rock3-29]
          Length = 65

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E G+DVF+H SA+   G  +L EGQ V +D V + A G
Sbjct: 2  QGKVKWFNAEKGFGFI----EREDGEDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|224476532|ref|YP_002634138.1| putative cold shock protein [Staphylococcus carnosus subsp.
          carnosus TM300]
 gi|222421139|emb|CAL27953.1| putative cold shock protein [Staphylococcus carnosus subsp.
          carnosus TM300]
          Length = 66

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQAVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|150389111|ref|YP_001319160.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus
          metalliredigens QYMF]
 gi|149948973|gb|ABR47501.1| putative cold-shock DNA-binding domain protein [Alkaliphilus
          metalliredigens QYMF]
          Length = 66

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ V ++ V+   N  
Sbjct: 4  GTVKWFNSEKGFGFIEVEG----GDDVFVHFSAITGDGFKTLEEGQKVEFNVVE--GNRG 57

Query: 65 YSAENL 70
            AEN+
Sbjct: 58 PQAENV 63


>gi|320527168|ref|ZP_08028355.1| major cold shock protein CspA [Solobacterium moorei F0204]
 gi|320132496|gb|EFW25039.1| major cold shock protein CspA [Solobacterium moorei F0204]
          Length = 66

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N +KGYGFIT    T+ G DVF+H SA+ S G   L EG  V++D  +++
Sbjct: 4  GKVKWFNAEKGYGFIT----TDEGKDVFVHYSAIQSEGFKTLDEGAAVSFDITESN 55


>gi|148652145|ref|YP_001279238.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          sp. PRwf-1]
 gi|148653967|ref|YP_001281060.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          sp. PRwf-1]
 gi|148571229|gb|ABQ93288.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1]
 gi|148573051|gb|ABQ95110.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1]
          Length = 69

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KG+GFI P    E+G DVF H S +AS+G   L EGQ V +   Q
Sbjct: 6  KGTVKWFNEAKGFGFIAP----ETGPDVFAHYSEIASSGFKTLAEGQEVEFTVTQ 56


>gi|22538234|ref|NP_689085.1| CSD family cold shock protein [Streptococcus agalactiae 2603V/R]
 gi|25012091|ref|NP_736486.1| hypothetical protein gbs2053 [Streptococcus agalactiae NEM316]
 gi|76788151|ref|YP_330629.1| cold shock protein [Streptococcus agalactiae A909]
 gi|77405153|ref|ZP_00782252.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae H36B]
 gi|77408137|ref|ZP_00784883.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae COH1]
 gi|77410841|ref|ZP_00787198.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae CJB111]
 gi|77414028|ref|ZP_00790199.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae 515]
 gi|22535146|gb|AAN00958.1|AE014286_21 cold shock protein, CSD family [Streptococcus agalactiae 2603V/R]
 gi|24413635|emb|CAD47712.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563208|gb|ABA45792.1| cold shock protein [Streptococcus agalactiae A909]
 gi|77159910|gb|EAO71050.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae 515]
 gi|77163059|gb|EAO74013.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae CJB111]
 gi|77173237|gb|EAO76360.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae COH1]
 gi|77176296|gb|EAO79066.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae H36B]
 gi|319745994|gb|EFV98276.1| cold shock protein CspA [Streptococcus agalactiae ATCC 13813]
          Length = 67

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI    S+E+G DVF H S +   G   L EGQ VT+D +Q+   G
Sbjct: 3  QGTVKWFNSEKGFGFI----SSETGTDVFAHFSEIKVDGFKTLEEGQKVTFD-IQDGQRG 57

Query: 64 KYSAENLKLV 73
             A N+ LV
Sbjct: 58 P-QATNINLV 66


>gi|319891930|ref|YP_004148805.1| Cold shock protein CspC [Staphylococcus pseudintermedius
          HKU10-03]
 gi|317161626|gb|ADV05169.1| Cold shock protein CspC [Staphylococcus pseudintermedius
          HKU10-03]
 gi|323464979|gb|ADX77132.1| cold shock protein B [Staphylococcus pseudintermedius ED99]
          Length = 66

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI      E+GDDVF+H SA+   G  +L EGQ V +D V+ + 
Sbjct: 1  MNNGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIVGDGYKSLEEGQNVDFDIVEGE- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +K+
Sbjct: 56 RGAQAANVVKM 66


>gi|288941163|ref|YP_003443403.1| cold-shock DNA-binding domain-containing protein [Allochromatium
          vinosum DSM 180]
 gi|288896535|gb|ADC62371.1| cold-shock DNA-binding domain protein [Allochromatium vinosum DSM
          180]
          Length = 70

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KGYGFI  EG    G DVF+H SA+  AG   L EGQ VT +  Q
Sbjct: 8  GTVKWFNDEKGYGFIEREG----GKDVFVHYSAINGAGRKTLAEGQQVTMEVTQ 57


>gi|297583350|ref|YP_003699130.1| cold-shock DNA-binding domain-containing protein [Bacillus
          selenitireducens MLS10]
 gi|297141807|gb|ADH98564.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens
          MLS10]
          Length = 65

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V +D  Q
Sbjct: 3  QGTVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLDEGQTVNFDIEQ 53


>gi|302829474|ref|XP_002946304.1| nucleic acid binding protein [Volvox carteri f. nagariensis]
 gi|121077603|gb|ABM47305.1| nucleic acid binding protein [Volvox carteri f. nagariensis]
 gi|300269119|gb|EFJ53299.1| nucleic acid binding protein [Volvox carteri f. nagariensis]
          Length = 242

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 4/65 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           RG++KW+N  KG+GFITPEG    G+D F+H++ + S G  +L EG+ V ++ V+   +
Sbjct: 7  QRGTVKWFNATKGFGFITPEG---GGEDFFVHQTNINSDGFRSLREGEAVEFE-VEAGPD 62

Query: 63 GKYSA 67
          G+  A
Sbjct: 63 GRSKA 67


>gi|239930071|ref|ZP_04687024.1| putative cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291438408|ref|ZP_06577798.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341303|gb|EFE68259.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
          Length = 67

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ VT+D  Q    G+
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GADVFAHYSNIATSGFRELQEGQKVTFDVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 57 KGPQAENIVP 66


>gi|192360440|ref|YP_001982658.1| cold shock protein-like protein [Cellvibrio japonicus Ueda107]
 gi|190686605|gb|ACE84283.1| cold shock protein-related protein [Cellvibrio japonicus Ueda107]
          Length = 78

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI    + ESG DVF+H SA++ +G   L EGQ V +D
Sbjct: 16 GTVKWFNESKGFGFI----AAESGQDVFVHYSAISGSGFKTLAEGQRVEFD 62


>gi|81429174|ref|YP_396175.1| cold shock protein CspA family protein [Lactobacillus sakei
          subsp. sakei 23K]
 gi|78610817|emb|CAI55868.1| Similar to cold shock protein, CspA family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 66

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N +KGYGF+T     E G DVF+H SA+   G   L EGQ V++D  ++D
Sbjct: 1  MENGTVKWFNAEKGYGFVT----REDGSDVFVHFSAIQGEGYKTLEEGQSVSFDIEESD 55


>gi|118578996|ref|YP_900246.1| cold-shock DNA-binding domain-containing protein [Pelobacter
          propionicus DSM 2379]
 gi|118501706|gb|ABK98188.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM
          2379]
          Length = 67

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N  KG+GFI  EG    G+DVF+H SA+   G  +L+EG  VT+D  Q
Sbjct: 3  KGKVKWFNDTKGFGFIEQEG----GEDVFVHFSAIQGEGFKSLSEGDEVTFDITQ 53


>gi|226310536|ref|YP_002770430.1| cold shock protein [Brevibacillus brevis NBRC 100599]
 gi|226093484|dbj|BAH41926.1| cold shock protein [Brevibacillus brevis NBRC 100599]
          Length = 66

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI  EG    G+DVF+H SA+   G   L EGQ V ++ V  + 
Sbjct: 1  MQTGTVKWFNAEKGYGFIAVEG----GNDVFVHFSAIQGDGFKTLEEGQRVEFNVV--EG 54

Query: 62 NGKYSAENL 70
          N    AEN+
Sbjct: 55 NRGPQAENV 63


>gi|71908706|ref|YP_286293.1| cold-shock DNA-binding protein family protein [Dechloromonas
          aromatica RCB]
 gi|71848327|gb|AAZ47823.1| cold-shock DNA-binding protein family [Dechloromonas aromatica
          RCB]
          Length = 72

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+  +E   D+F H SA+   G   L EGQ V++D VQ
Sbjct: 9  GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMNGFKTLKEGQKVSFDVVQ 59


>gi|217076694|ref|YP_002334410.1| hypothetical protein THA_582 [Thermosipho africanus TCF52B]
 gi|217036547|gb|ACJ75069.1| conserved domain protein [Thermosipho africanus TCF52B]
          Length = 65

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 5/64 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KGYGFIT     E G+D+F+H SA+ + G   L EGQ V +D VQ+   G
Sbjct: 2  KGTVKWFDAKKGYGFIT----KEDGEDIFVHWSAIQTDGFKTLKEGQEVEFD-VQDGQKG 56

Query: 64 KYSA 67
            +A
Sbjct: 57 PQAA 60


>gi|254387116|ref|ZP_05002389.1| cold shock protein [Streptomyces sp. Mg1]
 gi|194345934|gb|EDX26900.1| cold shock protein [Streptomyces sp. Mg1]
          Length = 67

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   LTEGQ V++D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIATQGFRELTEGQRVSFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|16077975|ref|NP_388791.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221308749|ref|ZP_03590596.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221313071|ref|ZP_03594876.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
          NCIB 3610]
 gi|221317997|ref|ZP_03599291.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
          JH642]
 gi|221322271|ref|ZP_03603565.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
          SMY]
 gi|296332331|ref|ZP_06874792.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305673610|ref|YP_003865282.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis subsp. spizizenii str.
          W23]
 gi|321314635|ref|YP_004206922.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis BSn5]
 gi|416834|sp|P32081|CSPB_BACSU RecName: Full=Cold shock protein CspB; AltName: Full=Major cold
          shock protein
 gi|114793771|pdb|2ES2|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Cold
          Shock Protein Bs-Cspb In Complex With Hexathymidine
 gi|116667125|pdb|2F52|A Chain A, Solution Structure Of Cold Shock Protein Cspb From
          Bacillus Subtilis In Complex With Heptathymidine
 gi|157830704|pdb|1CSP|A Chain A, Crystal Structure Of The Bacillus Subtilis Major Cold
          Shock Protein, Cspb: A Universal Nucleic-Acid Binding
          Domain
 gi|157830705|pdb|1CSQ|A Chain A, Crystal Structure Of The Bacillus Subtilis Major Cold
          Shock Protein, Cspb: A Universal Nucleic-Acid Binding
          Domain
 gi|157832148|pdb|1NMF|A Chain A, Major Cold-Shock Protein, Nmr, 20 Structures
 gi|157832149|pdb|1NMG|A Chain A, Major Cold-Shock Protein, Nmr, Minimized Average
          Structure
 gi|297761|emb|CAA42235.1| cold shock protein (CspB) [Bacillus subtilis]
 gi|1239985|emb|CAA65693.1| cold shock protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|1336658|gb|AAB01346.1| cold shock protein CspB [Bacillus subtilis subsp. subtilis str.
          JH642]
 gi|2633233|emb|CAB12738.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis subsp. subtilis str.
          168]
 gi|291483360|dbj|BAI84435.1| major cold-shock protein [Bacillus subtilis subsp. natto BEST195]
 gi|296150249|gb|EFG91137.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305411854|gb|ADM36973.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis subsp. spizizenii str.
          W23]
 gi|320020909|gb|ADV95895.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis BSn5]
          Length = 67

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 3  EGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN 55


>gi|258517067|ref|YP_003193289.1| cold-shock DNA-binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257780772|gb|ACV64666.1| cold-shock DNA-binding domain protein [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 65

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KGYGFI      E G DVF+H SA+ S G   L EGQ V +D V+  A G 
Sbjct: 3  GKVKWFSAEKGYGFI----EREDGGDVFVHFSAIQSEGFKTLEEGQEVEFDIVEG-ARGP 57

Query: 65 YSAENLKL 72
           +A  +K+
Sbjct: 58 QAANVMKV 65


>gi|163941162|ref|YP_001646046.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229012730|ref|ZP_04169900.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
 gi|229018744|ref|ZP_04175594.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|229024986|ref|ZP_04181415.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|229061117|ref|ZP_04198468.1| Cold shock protein cspB [Bacillus cereus AH603]
 gi|229134360|ref|ZP_04263173.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
 gi|229168275|ref|ZP_04296000.1| Cold shock protein cspB [Bacillus cereus AH621]
 gi|229174199|ref|ZP_04301734.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|163863359|gb|ABY44418.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
 gi|228609320|gb|EEK66607.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|228615101|gb|EEK72201.1| Cold shock protein cspB [Bacillus cereus AH621]
 gi|228648981|gb|EEL05003.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
 gi|228718200|gb|EEL69838.1| Cold shock protein cspB [Bacillus cereus AH603]
 gi|228736321|gb|EEL86887.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|228742550|gb|EEL92700.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|228748565|gb|EEL98420.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
          Length = 66

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    G+DVF+H SA+   G  +L EGQ VT++  Q +
Sbjct: 1  MQNGKVKWFNAEKGFGFIEVEG----GEDVFVHFSAIQGDGFKSLEEGQEVTFEVEQGN 55


>gi|322384501|ref|ZP_08058183.1| cold-shock protein molecular chaperone RNA-helicase
          co-factor-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321150711|gb|EFX44186.1| cold-shock protein molecular chaperone RNA-helicase
          co-factor-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 76

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ V ++ V  + 
Sbjct: 11 VQTGTVKWFNAEKGFGFIEVEG----GNDVFVHFSAIQGDGFKTLDEGQRVEFNVV--EG 64

Query: 62 NGKYSAENL 70
          N    AEN+
Sbjct: 65 NRGPQAENV 73


>gi|289435359|ref|YP_003465231.1| cold-shock domain family protein [Listeria seeligeri serovar 1/2b
          str. SLCC3954]
 gi|315283050|ref|ZP_07871326.1| putative cold-shock protein [Listeria marthii FSL S4-120]
 gi|315304007|ref|ZP_07874446.1| putative cold-shock protein [Listeria ivanovii FSL F6-596]
 gi|289171603|emb|CBH28149.1| cold-shock domain family protein [Listeria seeligeri serovar 1/2b
          str. SLCC3954]
 gi|313613309|gb|EFR87177.1| putative cold-shock protein [Listeria marthii FSL S4-120]
 gi|313627624|gb|EFR96318.1| putative cold-shock protein [Listeria ivanovii FSL F6-596]
          Length = 66

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ V ++ V+
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVEG----GDDVFVHFSAIEGDGFKTLDEGQSVEFEIVE 53


>gi|229551920|ref|ZP_04440645.1| CspA family cold shock transcriptional regulator [Lactobacillus
          rhamnosus LMS2-1]
 gi|229314655|gb|EEN80628.1| CspA family cold shock transcriptional regulator [Lactobacillus
          rhamnosus LMS2-1]
          Length = 99

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N +KGYGFIT     E G DVF+H SA+   G   L EGQ VT++   +D
Sbjct: 33 LMEHGTVKWFNAEKGYGFIT----REDGSDVFVHFSAIQGEGYKTLEEGQAVTFEVEDSD 88


>gi|89101277|ref|ZP_01174096.1| cold-shock protein [Bacillus sp. NRRL B-14911]
 gi|89084011|gb|EAR63193.1| cold-shock protein [Bacillus sp. NRRL B-14911]
          Length = 66

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  EG    GDDVF+H +A+   G  +L EGQ V+++ V+ + 
Sbjct: 1  MQNGKVKWFNNEKGFGFIEVEG----GDDVFVHFTAIQGDGFKSLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|99081568|ref|YP_613722.1| cold-shock DNA-binding protein family protein [Ruegeria sp.
          TM1040]
 gi|99037848|gb|ABF64460.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040]
          Length = 68

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE   E G DVF+H SAV  +GL  L + Q V Y+  +   +G+
Sbjct: 4  GTVKWFNTTKGYGFIEPE---EGGKDVFVHISAVERSGLTGLADNQKVGYELTEG-RDGR 59

Query: 65 YSAENLK 71
            A +++
Sbjct: 60 QMAGDIR 66


>gi|289549228|ref|YP_003474216.1| cold-shock DNA-binding domain protein [Thermocrinis albus DSM
          14484]
 gi|289182845|gb|ADC90089.1| cold-shock DNA-binding domain protein [Thermocrinis albus DSM
          14484]
          Length = 69

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          MV RG++KW++ +KGYGFIT +   ++  DVF+H SA+   G   L +GQ V ++ ++ D
Sbjct: 1  MVVRGTVKWFSKEKGYGFITRD---DNQGDVFVHFSAIQQRGFKTLEQGQKVEFE-IEED 56

Query: 61 ANGKYSAENLKLV 73
          + G   A+N++++
Sbjct: 57 SKGP-RAKNVRVI 68


>gi|157691644|ref|YP_001486106.1| major cold shock protein [Bacillus pumilus SAFR-032]
 gi|157680402|gb|ABV61546.1| major cold shock protein [Bacillus pumilus SAFR-032]
          Length = 79

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 16 EGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN 68


>gi|71083962|ref|YP_266682.1| cold shock DNA-binding domain-containing protein [Candidatus
          Pelagibacter ubique HTCC1062]
 gi|91762969|ref|ZP_01264934.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
          ubique HTCC1002]
 gi|71063075|gb|AAZ22078.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
          ubique HTCC1062]
 gi|91718771|gb|EAS85421.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
          ubique HTCC1002]
          Length = 68

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+NP KG+GFI  E   +   DVF+H SAV  AG+  L EGQ +T++ V++ 
Sbjct: 1  MSLQGKVKWFNPTKGFGFIEREDKEK---DVFVHVSAVRDAGMNGLDEGQALTFE-VEDG 56

Query: 61 ANGKYSAENLK 71
            G  SA NLK
Sbjct: 57 PKGP-SAVNLK 66


>gi|313679366|ref|YP_004057105.1| cold-shock DNA-binding protein family [Oceanithermus profundus
          DSM 14977]
 gi|313152081|gb|ADR35932.1| cold-shock DNA-binding protein family [Oceanithermus profundus
          DSM 14977]
          Length = 71

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  EG    G DVF+H SA+ S+G   L EG +V ++ V++  
Sbjct: 1  MEKGKVKWFNAEKGYGFIEREG----GSDVFVHFSAINSSGFRTLNEGDVVEFE-VEDGP 55

Query: 62 NGKYSAENLKLV 73
           G  SA N+ +V
Sbjct: 56 KGP-SAANVTVV 66


>gi|297194957|ref|ZP_06912355.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152559|gb|EFH31845.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 67

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ VT+D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GADVFAHYSNIATSGFRELQEGQKVTFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|86157415|ref|YP_464200.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|197121458|ref|YP_002133409.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|220916162|ref|YP_002491466.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85773926|gb|ABC80763.1| cold-shock DNA-binding protein family [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|196171307|gb|ACG72280.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|219954016|gb|ACL64400.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 67

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFIT +G    GDDVF H +A+ + G   L EGQ V +D  +
Sbjct: 4  GTVKWFNDAKGFGFITQDG---GGDDVFCHHTAIQADGFRTLAEGQKVEFDVTR 54


>gi|329120534|ref|ZP_08249198.1| cold shock domain protein CspD [Neisseria bacilliformis ATCC
          BAA-1200]
 gi|327461273|gb|EGF07605.1| cold shock domain protein CspD [Neisseria bacilliformis ATCC
          BAA-1200]
          Length = 67

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+   E GDD+F H SA+   G   L EGQ V++D
Sbjct: 4  GTVKWFNDAKGFGFITPD---EGGDDLFAHFSAINMDGFKTLKEGQKVSFD 51


>gi|326523669|dbj|BAJ93005.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 231

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI+PE  +E   D+F+H+SA+ S G  +L E  +V +D +  D +G
Sbjct: 6  KGTVKWFNVTKGFGFISPEDGSE---DLFVHQSAIKSDGYRSLNENDVVEFDVITGD-DG 61

Query: 64 KYSAENL 70
          +  A ++
Sbjct: 62 RTKASDV 68


>gi|307313947|ref|ZP_07593562.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|306899221|gb|EFN29859.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 67

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++  DKG+GFITP+     G DVF+H SA+   G  +L +GQ V+Y+  Q+   GK
Sbjct: 4  GTVKFFAQDKGFGFITPD---SGGPDVFVHISALGFGG--SLQDGQKVSYELGQDRKTGK 58

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 59 SKAENVSIL 67


>gi|228993599|ref|ZP_04153507.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
 gi|228999635|ref|ZP_04159212.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|229163862|ref|ZP_04291803.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|228619604|gb|EEK76489.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|228760161|gb|EEM09130.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|228766190|gb|EEM14836.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
          Length = 66

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 1  MQTGKVKWFNGEKGFGFIEVEG----GDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGN 55


>gi|157364579|ref|YP_001471346.1| cold-shock DNA-binding domain-containing protein [Thermotoga
          lettingae TMO]
 gi|157315183|gb|ABV34282.1| putative cold-shock DNA-binding domain protein [Thermotoga
          lettingae TMO]
          Length = 67

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW++  KGYGFIT EG    G+DVF+H SA+ + G   L EGQ V ++  Q +
Sbjct: 1  MFKGTVKWFDSKKGYGFITKEG----GEDVFVHFSAIKTDGFKTLREGQEVEFEVQQGN 55


>gi|331695978|ref|YP_004332217.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326950667|gb|AEA24364.1| cold-shock DNA-binding domain protein [Pseudonocardia
          dioxanivorans CB1190]
          Length = 68

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 7/71 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KGYGF+ P+G    G DVF+H SA+   G  +L EGQ V++D  Q    G
Sbjct: 3  EGTVKWFNSEKGYGFLAPDG---GGADVFVHYSAIQVNGYKSLDEGQRVSFDIEQ----G 55

Query: 64 KYSAENLKLVP 74
          +   +  K+ P
Sbjct: 56 QKGPQATKVTP 66


>gi|332671932|ref|YP_004454940.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332340970|gb|AEE47553.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
          484]
          Length = 67

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI P+   + G DVF H SA+AS+G  +L E Q V +D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAPD---DGGPDVFAHYSAIASSGYRSLEENQKVQFDVTQ 54


>gi|284989363|ref|YP_003407917.1| cold-shock DNA-binding domain-containing protein
          [Geodermatophilus obscurus DSM 43160]
 gi|284062608|gb|ADB73546.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
          DSM 43160]
          Length = 66

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N +KG+GFI  +G    G DVF+H SA+   G  +L EGQ VT++ VQ +
Sbjct: 3  QGTVKWFNAEKGFGFIAVDG----GQDVFVHYSAIQMDGYKSLDEGQRVTFEVVQGE 55


>gi|16124918|ref|NP_419482.1| cold-shock domain-contain protein [Caulobacter crescentus CB15]
 gi|221233638|ref|YP_002516074.1| cold shock protein [Caulobacter crescentus NA1000]
 gi|13421882|gb|AAK22650.1| cold-shock domain family protein [Caulobacter crescentus CB15]
 gi|220962810|gb|ACL94166.1| cold shock protein [Caulobacter crescentus NA1000]
          Length = 69

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   ++   D F+H SAV  +GL ++ EGQ + Y+  ++  +GK
Sbjct: 4  GTVKWFNAAKGFGFIQP---SDGSADAFVHISAVERSGLGSIDEGQKLNYELERDQRSGK 60

Query: 65 YSAENL 70
           SA  L
Sbjct: 61 MSAGQL 66


>gi|226943910|ref|YP_002798983.1| Cold-shock DNA-binding domain-containing protein [Azotobacter
          vinelandii DJ]
 gi|226718837|gb|ACO78008.1| Cold-shock DNA-binding domain-containing protein [Azotobacter
          vinelandii DJ]
          Length = 69

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP    ESG D+F+H  ++ S+G  +L EGQ V++  V+
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHYRSIQSSGFKSLQEGQRVSFVAVK 56


>gi|238020304|ref|ZP_04600730.1| hypothetical protein GCWU000324_00182 [Kingella oralis ATCC
          51147]
 gi|237867284|gb|EEP68290.1| hypothetical protein GCWU000324_00182 [Kingella oralis ATCC
          51147]
          Length = 67

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D V     GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFD-VTTGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|194014976|ref|ZP_03053593.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|194014002|gb|EDW23567.1| conserved domain protein [Bacillus pumilus ATCC 7061]
          Length = 66

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 3  EGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN 55


>gi|167756812|ref|ZP_02428939.1| hypothetical protein CLORAM_02361 [Clostridium ramosum DSM 1402]
 gi|237734529|ref|ZP_04565010.1| cold shock protein [Mollicutes bacterium D7]
 gi|167702987|gb|EDS17566.1| hypothetical protein CLORAM_02361 [Clostridium ramosum DSM 1402]
 gi|229382349|gb|EEO32440.1| cold shock protein [Coprobacillus sp. D7]
          Length = 66

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 42/59 (71%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ G++KW+N +KG+GFIT +    +G D+F+H SA+  +G  +L EG  V++D V++D
Sbjct: 1  MNTGTVKWFNSEKGFGFITKD----TGGDLFVHFSAIQGSGFKSLEEGAKVSFDIVESD 55


>gi|222054676|ref|YP_002537038.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
 gi|221563965|gb|ACM19937.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
          Length = 66

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N  KG+GFI      E+G+DVF+H S++   G  +L EGQ VT+D +Q
Sbjct: 3  KGVVKWFNDAKGFGFI----EQENGEDVFVHFSSIQGDGFKSLAEGQAVTFDVIQ 53


>gi|57866866|ref|YP_188550.1| CSD family cold shock protein [Staphylococcus epidermidis RP62A]
 gi|242242680|ref|ZP_04797125.1| cold shock protein CspA [Staphylococcus epidermidis W23144]
 gi|57637524|gb|AAW54312.1| cold shock protein, CSD family [Staphylococcus epidermidis RP62A]
 gi|242233816|gb|EES36128.1| cold shock protein CspA [Staphylococcus epidermidis W23144]
          Length = 77

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D
Sbjct: 11 VMKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD 66

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 67 -RGPQAANVVKL 77


>gi|311067393|ref|YP_003972316.1| CspB protein [Bacillus atrophaeus 1942]
 gi|310867910|gb|ADP31385.1| CspB [Bacillus atrophaeus 1942]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 3  EGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQTVSFEIVEGN 55


>gi|307546021|ref|YP_003898500.1| cold shock protein CspA [Halomonas elongata DSM 2581]
 gi|307218045|emb|CBV43315.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas
          elongata DSM 2581]
          Length = 68

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI+PE   + GDD+F+H S + + G  +L +GQ V+++  Q
Sbjct: 4  GTVKWFNDTKGYGFISPE---DGGDDLFVHFSEIQAEGFKSLQDGQKVSFEVTQ 54


>gi|311029540|ref|ZP_07707630.1| cold shock protein [Bacillus sp. m3-13]
          Length = 65

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+  A G
Sbjct: 3  QGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQEVSFEIVEG-ARG 57

Query: 64 KYSA 67
            +A
Sbjct: 58 PQAA 61


>gi|76811741|ref|YP_332524.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|83720401|ref|YP_441317.1| cold-shock domain-contain protein [Burkholderia thailandensis
          E264]
 gi|76581194|gb|ABA50669.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|83654226|gb|ABC38289.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis E264]
          Length = 81

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++ VQ
Sbjct: 18 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQ 68


>gi|23099198|ref|NP_692664.1| cold shock protein [Oceanobacillus iheyensis HTE831]
 gi|22777426|dbj|BAC13699.1| cold shock protein [Oceanobacillus iheyensis HTE831]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KGYGFI      E G+DVF+H SA+   G  +L EGQ V+++ V+ +
Sbjct: 1  MENGVVKWFNAEKGYGFI----QLEEGNDVFVHYSAIQEEGFKSLEEGQEVSFEIVEGE 55


>gi|261343563|ref|ZP_05971208.1| conserved domain protein [Providencia rustigianii DSM 4541]
 gi|282568712|gb|EFB74247.1| conserved domain protein [Providencia rustigianii DSM 4541]
          Length = 69

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KG+GFITPE  ++   DVF+H SA+ S G   L EGQ V ++  +
Sbjct: 5  KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAITSDGFKTLAEGQRVEFEITE 56


>gi|255263028|ref|ZP_05342370.1| conserved domain protein [Thalassiobium sp. R2A62]
 gi|255105363|gb|EET48037.1| conserved domain protein [Thalassiobium sp. R2A62]
          Length = 68

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G+DVF+H SAV  +G+  L + Q V ++ ++   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPD---DGGNDVFVHISAVERSGMTGLADDQKVEFE-LEEGRDGR 59

Query: 65 YSAENLKLV 73
            A NLK V
Sbjct: 60 QMAGNLKAV 68


>gi|226939860|ref|YP_002794933.1| CspA [Laribacter hongkongensis HLHK9]
 gi|226714786|gb|ACO73924.1| CspA [Laribacter hongkongensis HLHK9]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFI+P+   E G+D+F H SA+ S G   L EGQ V++D
Sbjct: 4  GIVKWFNESKGFGFISPD---EGGEDLFAHFSAIQSKGFKTLAEGQRVSFD 51


>gi|225571084|ref|ZP_03780101.1| hypothetical protein CLOHYLEM_07184 [Clostridium hylemonae DSM
          15053]
 gi|225160165|gb|EEG72784.1| hypothetical protein CLOHYLEM_07184 [Clostridium hylemonae DSM
          15053]
          Length = 103

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N  KG+GFIT +     G DVF+H SA+ S G   L EGQ VT+D
Sbjct: 35 MNSGTVKWFNSQKGFGFITDD----QGGDVFVHFSAIVSNGFKTLEEGQKVTFD 84


>gi|78486201|ref|YP_392126.1| cold-shock DNA-binding domain-containing protein [Thiomicrospira
          crunogena XCL-2]
 gi|78364487|gb|ABB42452.1| cold-shock DNA-binding protein family [Thiomicrospira crunogena
          XCL-2]
          Length = 69

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  EG    G DVF+H SA+  AG  +L EGQ VT +  Q
Sbjct: 7  GTVKWFNDEKGFGFIEQEG----GKDVFVHFSAINGAGRKSLMEGQSVTMEVTQ 56


>gi|89097885|ref|ZP_01170772.1| cold shock protein [Bacillus sp. NRRL B-14911]
 gi|89087387|gb|EAR66501.1| cold shock protein [Bacillus sp. NRRL B-14911]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N +KG+GFI  EG    G+DVF+H SA+ S G  +L EGQ V +D
Sbjct: 4  GKVKWFNAEKGFGFIEVEG----GEDVFVHFSAIQSEGFKSLDEGQEVEFD 50


>gi|13095918|ref|NP_076827.1| Csp [Lactococcus phage bIL312]
 gi|15672511|ref|NP_266685.1| cold shock protein D [Lactococcus lactis subsp. lactis Il1403]
 gi|12723413|gb|AAK04627.1|AE006287_6 cold shock protein D [Lactococcus lactis subsp. lactis Il1403]
 gi|12831129|gb|AAK08480.1|AF323673_27 Csp [Lactococcus phage bIL312]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N DKG+GFIT    +E G D+F H SA+ S G  +L EGQ V +D
Sbjct: 4  GTVKWFNADKGFGFIT----SEEGKDLFAHFSAIQSDGFKSLDEGQKVEFD 50


>gi|218189944|gb|EEC72371.1| hypothetical protein OsI_05633 [Oryza sativa Indica Group]
          Length = 131

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 38/52 (73%), Gaps = 3/52 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          HRG++KW+N  KG+GFI+P+  +E   D+F+H+S++ + G  +L EG+ V +
Sbjct: 7  HRGTVKWFNDTKGFGFISPDDGSE---DLFVHQSSIKADGFRSLAEGEQVEF 55


>gi|170017900|ref|YP_001728819.1| cold shock protein [Leuconostoc citreum KM20]
 gi|169804757|gb|ACA83375.1| Cold shock protein [Leuconostoc citreum KM20]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGF+T     E+G+DVF H SA+   G   L EGQ V ++ V++  
Sbjct: 1  MEKGTVKWFNGEKGYGFVTR----ENGEDVFAHFSAIQGDGFKTLEEGQAVEFE-VESSD 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGLQAANIVKL 66


>gi|146309868|ref|YP_001174942.1| cold-shock DNA-binding protein family protein [Enterobacter sp.
          638]
 gi|145316744|gb|ABP58891.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
          Length = 70

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP+KG+GFITP+  ++   DVF+H SA+ S+    L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFNPEKGFGFITPQDGSK---DVFVHFSAIQSSDFKTLDEGQKVEFS-IENGAKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 SAVNVIAL 70


>gi|329295571|ref|ZP_08252907.1| cold shock protein CspE [Plautia stali symbiont]
          Length = 69

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE  ++   DVF+H SA+ S G   L EGQ V ++ + + A G
Sbjct: 5  KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAIQSNGFKTLAEGQRVEFE-ITDGAKG 60

Query: 64 KYSA 67
            +A
Sbjct: 61 PSAA 64


>gi|325115241|emb|CBZ50796.1| lin-28 homolog B, related [Neospora caninum Liverpool]
          Length = 133

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V RG+ KW++  KGYGFIT     E G D+F+H+S + + G  NL EG+ V +  +Q   
Sbjct: 3  VSRGTCKWFDSKKGYGFITA----EDGTDLFVHQSEIRAEGFRNLAEGEQVEF-VIQTGN 57

Query: 62 NGKYSAENL 70
          +G+  A N+
Sbjct: 58 DGRKKAVNV 66


>gi|118445055|ref|YP_879083.1| cold shock protein cspB [Clostridium novyi NT]
 gi|118135511|gb|ABK62555.1| cold shock protein cspB [Clostridium novyi NT]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI+ EG     DDVF+H SA+   G   L EGQ V ++ V   A G 
Sbjct: 4  GIVKWFNAEKGFGFISVEGE----DDVFVHFSAIQGEGFKTLEEGQKVEFE-VTEGARGP 58

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 59 QAANVVKL 66


>gi|78222480|ref|YP_384227.1| cold-shock DNA-binding protein family protein [Geobacter
          metallireducens GS-15]
 gi|78193735|gb|ABB31502.1| cold-shock DNA-binding protein family [Geobacter metallireducens
          GS-15]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          +G +KW+N  KG+GFI      E+G+DVF+H SA+ S G   L EG+ VT+D V
Sbjct: 3  QGKVKWFNDAKGFGFI----EQENGEDVFVHFSAIQSDGFKTLAEGEAVTFDVV 52


>gi|72383849|ref|YP_293203.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72123192|gb|AAZ65346.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + GDD+F H S V  +G  +L EGQ V+++ V+    GK
Sbjct: 4  GTVKWFNDTKGFGFITPD---DGGDDLFAHFSEVQGSGFKSLQEGQKVSFE-VKQGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|152975126|ref|YP_001374643.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152023878|gb|ABS21648.1| putative cold-shock DNA-binding domain protein [Bacillus
          cytotoxicus NVH 391-98]
          Length = 65

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG+    DDVF+H +A+   G  +L EGQ V++D V+ +  G
Sbjct: 2  QGKVKWFNNEKGFGFIEIEGA----DDVFVHFTAIQGEGYKSLEEGQEVSFDIVEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|328884303|emb|CCA57542.1| Cold shock protein CspD [Streptomyces venezuelae ATCC 10712]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L E QLVT+D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINANGFRSLEENQLVTFDVTQ 54


>gi|302869749|ref|YP_003838386.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
 gi|315503769|ref|YP_004082656.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|302572608|gb|ADL48810.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
          27029]
 gi|315410388|gb|ADU08505.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFITP+   + G DVF H SA+ ++G  +L E Q V ++  Q     +
Sbjct: 4  GTVKWFNADKGFGFITPD---DGGADVFAHFSAIQTSGYRSLDENQRVEFEVTQGQKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENIR 65


>gi|291295051|ref|YP_003506449.1| cold-shock DNA-binding domain-containing protein [Meiothermus
          ruber DSM 1279]
 gi|290470010|gb|ADD27429.1| cold-shock DNA-binding domain protein [Meiothermus ruber DSM
          1279]
          Length = 75

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 5/73 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  E   E   DVF+H SA+ S G   L EG +VT++ ++   
Sbjct: 1  MQKGKVKWFNAEKGYGFIQRE---EGEPDVFVHYSAIQSRGFRTLNEGDVVTFE-IEPGK 56

Query: 62 NGK-YSAENLKLV 73
          NGK   A N+ +V
Sbjct: 57 NGKGPQAANVSVV 69


>gi|226507970|ref|NP_001140374.1| hypothetical protein LOC100272427 [Zea mays]
 gi|194699220|gb|ACF83694.1| unknown [Zea mays]
          Length = 395

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           RG++KW+N  KG+GFI+PE  +E   D+F+H+S++ S G  +L EG+ V +   + D
Sbjct: 7  QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD 61


>gi|94968921|ref|YP_590969.1| cold-shock DNA-binding protein family protein [Candidatus
          Koribacter versatilis Ellin345]
 gi|94550971|gb|ABF40895.1| cold-shock DNA-binding protein family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI    S ++G+DVF+H +A+ + G  +L EGQ V ++ V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFI----SRQNGEDVFVHHTAIQAQGFRSLQEGQAVQFNVVKGPK 56

Query: 62 NGKYSAENLK 71
             + AEN++
Sbjct: 57 G--WQAENVQ 64


>gi|307315884|ref|ZP_07595388.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307322018|ref|ZP_07601396.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306892307|gb|EFN23115.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306898474|gb|EFN29157.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 90

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++  DKG+GFITP+     G DVF+H SA+   G  +L +GQ V+Y+  Q+   GK
Sbjct: 27 GTVKFFAQDKGFGFITPD---SGGPDVFVHISALGFGG--SLQDGQKVSYELGQDRKTGK 81

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 82 SKAENVSIL 90


>gi|238028419|ref|YP_002912650.1| Cold shock transcription regulator protein [Burkholderia glumae
          BGR1]
 gi|330818078|ref|YP_004361783.1| Cold shock transcription regulator protein [Burkholderia gladioli
          BSR3]
 gi|237877613|gb|ACR29946.1| Cold shock transcription regulator protein [Burkholderia glumae
          BGR1]
 gi|327370471|gb|AEA61827.1| Cold shock transcription regulator protein [Burkholderia gladioli
          BSR3]
          Length = 73

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++ VQ
Sbjct: 10 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQ 60


>gi|239827200|ref|YP_002949824.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70]
 gi|239807493|gb|ACS24558.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G +KW+N +KGYGFI  +G    G+DVF+H +A+   G   L EGQ V +D +  D 
Sbjct: 1  MNKGKVKWFNAEKGYGFIEMDG----GNDVFVHFTAIQGEGFKTLEEGQTVMFDII--DG 54

Query: 62 NGKYSAENLK 71
          N    A N++
Sbjct: 55 NRGPQAANVQ 64


>gi|167747330|ref|ZP_02419457.1| hypothetical protein ANACAC_02047 [Anaerostipes caccae DSM 14662]
 gi|167653308|gb|EDR97437.1| hypothetical protein ANACAC_02047 [Anaerostipes caccae DSM 14662]
          Length = 91

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 41/59 (69%), Gaps = 3/59 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ G++KW+N  KG+GFIT E    +G+DVF+H S +A+ G  +L +GQ VT++  Q +
Sbjct: 25 MNNGTVKWFNSTKGFGFITNE---STGEDVFVHFSGIAAEGFKSLEDGQKVTFETTQGN 80


>gi|163794316|ref|ZP_02188288.1| cold-shock DNA-binding domain protein [alpha proteobacterium
          BAL199]
 gi|159180484|gb|EDP65005.1| cold-shock DNA-binding domain protein [alpha proteobacterium
          BAL199]
          Length = 68

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFI PE  ++   DVFLH SAV  AGL +  EGQ V Y+ +++  +G+
Sbjct: 4  GTVKFFNTTKGFGFIQPEDGSK---DVFLHVSAVERAGLRSPNEGQKVQYE-IESGRDGR 59

Query: 65 YSAENL 70
           SA N+
Sbjct: 60 TSAGNI 65


>gi|92112880|ref|YP_572808.1| cold-shock DNA-binding protein family protein [Chromohalobacter
          salexigens DSM 3043]
 gi|91795970|gb|ABE58109.1| cold-shock DNA-binding protein family [Chromohalobacter
          salexigens DSM 3043]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+P    E GDD+F+H S + + G  +L +GQ V++D  Q
Sbjct: 4  GTVKWFNDAKGFGFISP---AEGGDDLFVHFSEIQAEGFKSLQDGQEVSFDVTQ 54


>gi|299821570|ref|ZP_07053458.1| cold shock protein CspA [Listeria grayi DSM 20601]
 gi|299817235|gb|EFI84471.1| cold shock protein CspA [Listeria grayi DSM 20601]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ V ++ V+
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVEG----GDDVFVHFSAIQGDGFKTLDEGQSVEFEIVE 53


>gi|199598334|ref|ZP_03211754.1| Cold shock protein [Lactobacillus rhamnosus HN001]
 gi|258508067|ref|YP_003170818.1| CspA family cold shock protein_ [Lactobacillus rhamnosus GG]
 gi|258539340|ref|YP_003173839.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
 gi|199590787|gb|EDY98873.1| Cold shock protein [Lactobacillus rhamnosus HN001]
 gi|257147994|emb|CAR86967.1| Cold shock protein [Lactobacillus rhamnosus GG]
 gi|257151016|emb|CAR89988.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
 gi|259649389|dbj|BAI41551.1| cold shock protein [Lactobacillus rhamnosus GG]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N +KGYGFIT     E G DVF+H SA+   G   L EGQ VT++   +D
Sbjct: 1  MEHGTVKWFNAEKGYGFIT----REDGSDVFVHFSAIQGEGYKTLEEGQAVTFEVEDSD 55


>gi|237746974|ref|ZP_04577454.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
          HOxBLS]
 gi|229378325|gb|EEO28416.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
          HOxBLS]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITPE   + G+D+F H SA+  +G   L EGQ V ++  Q
Sbjct: 4  GTVKWFNDSKGFGFITPE---DGGEDLFAHFSAINMSGFKTLKEGQKVQFEVTQ 54


>gi|299822994|ref|ZP_07054880.1| cold shock protein CspA [Listeria grayi DSM 20601]
 gi|299816523|gb|EFI83761.1| cold shock protein CspA [Listeria grayi DSM 20601]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N +KG+GFI      E+GDDVF+H SA+   G  +L EGQ V++D
Sbjct: 1  METGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQGDGFKSLDEGQAVSFD 50


>gi|118443638|ref|YP_878429.1| cold shock protein -related protein [Clostridium novyi NT]
 gi|168186566|ref|ZP_02621201.1| conserved domain protein [Clostridium botulinum C str. Eklund]
 gi|118134094|gb|ABK61138.1| cold shock protein -related protein [Clostridium novyi NT]
 gi|169295395|gb|EDS77528.1| conserved domain protein [Clostridium botulinum C str. Eklund]
          Length = 65

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFIT    TE G+DVF H S +   G   L EGQ V++D V+  A G 
Sbjct: 3  GTVKWFNAEKGFGFIT----TEEGNDVFAHFSQINKDGFKTLEEGQNVSFDVVEG-AKGP 57

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 58 -QAENISVL 65


>gi|332993980|gb|AEF04035.1| putative Cold shock-like protein [Alteromonas sp. SN2]
          Length = 70

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N DKG+GF+T +G    G DVF+H  ++AS G   L+EGQ V++   Q
Sbjct: 7  GTVKWFNEDKGFGFLTQDG---GGKDVFVHFRSIASDGFKTLSEGQAVSFSVEQ 57


>gi|317129010|ref|YP_004095292.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
 gi|315473958|gb|ADU30561.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ V+++  Q
Sbjct: 1  MEQGKVKWFNAEKGFGFIEVEG----GDDVFVHFSAINGEGFKTLEEGQDVSFEVEQ 53


>gi|163761575|ref|ZP_02168646.1| cold shock protein [Hoeflea phototrophica DFL-43]
 gi|162281171|gb|EDQ31471.1| cold shock protein [Hoeflea phototrophica DFL-43]
          Length = 70

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI P+     G D+F+H SAV ++G+  L E Q V++D  + D
Sbjct: 1  MAETGTVKFFNVDKGFGFIKPD---NGGADIFVHISAVQASGMTGLEENQKVSFD-TEPD 56

Query: 61 ANGK-YSAENLKL 72
            GK   A NL+L
Sbjct: 57 RRGKGPKAVNLRL 69


>gi|91226280|ref|ZP_01261120.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
 gi|91189291|gb|EAS75570.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
          Length = 70

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFITP+     G D+F+H  ++ S G   L+EGQ V+  +V    N  
Sbjct: 7  GSVKWFNESKGFGFITPD---NGGSDLFVHFKSIVSEGFKTLSEGQKVS--FVVEQGNKG 61

Query: 65 YSAENLKLV 73
            A+N+ LV
Sbjct: 62 PQADNVTLV 70


>gi|239942860|ref|ZP_04694797.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|239989320|ref|ZP_04709984.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
 gi|291446332|ref|ZP_06585722.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|291349279|gb|EFE76183.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +AS+G   L EGQ V++D  Q    G+
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GADVFAHYSNIASSGFRELQEGQKVSFDVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 57 KGPQAENIVP 66


>gi|134098028|ref|YP_001103689.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|291007208|ref|ZP_06565181.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|133910651|emb|CAM00764.1| cold-shock DNA-binding domain protein [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P+G    G DVF+H SA+   G   L E Q VT++  Q
Sbjct: 3  QGTVKWFNSEKGFGFIAPDG---GGADVFVHYSAIEGNGFRTLEENQTVTFEITQ 54


>gi|116515229|ref|YP_802858.1| cold shock protein CspE [Buchnera aphidicola str. Cc (Cinara
          cedri)]
 gi|116257083|gb|ABJ90765.1| RNA chaperone, transcription antiterminator [Buchnera aphidicola
          str. Cc (Cinara cedri)]
          Length = 69

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++  +
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITE 56


>gi|317130365|ref|YP_004096647.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
 gi|315475313|gb|ADU31916.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G +KW+N +KG+GFI      E GDDVF+H SA+   G   L EGQ VT++
Sbjct: 1  MEQGKVKWFNSEKGFGFI----EREDGDDVFVHFSAIQGEGFKTLDEGQEVTFE 50


>gi|212633937|ref|YP_002310462.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3]
 gi|212555421|gb|ACJ27875.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3]
          Length = 70

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFIT +     G DVF+H  A+AS G   L EGQ V++D  Q
Sbjct: 7  GIVKWFNEDKGFGFITQD---NGGADVFVHFRAIASDGFKTLAEGQKVSFDLEQ 57


>gi|220931385|ref|YP_002508293.1| putative cold-shock DNA-binding domain protein [Halothermothrix
          orenii H 168]
 gi|219992695|gb|ACL69298.1| putative cold-shock DNA-binding domain protein [Halothermothrix
          orenii H 168]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          MV+ G +KW++  KGYGFI      E GDDVF+H SA+ + G  +L +G+ V ++ ++ D
Sbjct: 1  MVYTGKVKWFDAKKGYGFI----EREDGDDVFVHFSAIQADGFKSLEDGEEVEFEIIEGD 56


>gi|290476206|ref|YP_003469106.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Xenorhabdus bovienii SS-2004]
 gi|289175539|emb|CBJ82342.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Xenorhabdus bovienii SS-2004]
          Length = 69

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++  +
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEITE 56


>gi|156934364|ref|YP_001438280.1| hypothetical protein ESA_02195 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532618|gb|ABU77444.1| hypothetical protein ESA_02195 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 70

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 6/65 (9%)

Query: 1  MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M +R  GS+KW+N DKG+GFI P    +   DVF+H SA+ S     LTEGQ V +  V+
Sbjct: 1  MANRMNGSVKWFNADKGFGFIAP---ADGSKDVFVHFSAIQSDNFRTLTEGQQVEFS-VE 56

Query: 59 NDANG 63
          N A G
Sbjct: 57 NGAKG 61


>gi|326693593|ref|ZP_08230598.1| cold shock protein [Leuconostoc argentinum KCTC 3773]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGF+T     E+G+DVF H SA+   G   L EGQ V ++ V+   
Sbjct: 1  MEKGTVKWFNGEKGYGFVTR----ENGEDVFAHFSAIQGDGFKTLEEGQAVEFE-VETSD 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGLQAANIVKL 66


>gi|294470714|gb|ADE80749.1| cold shock domain protein 2 [Eutrema salsugineum]
          Length = 201

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 45/65 (69%), Gaps = 4/65 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           RG++KW++  KG+GFITP+   ++GDD+F+H+S++ S G  +L   + V ++ V+ D N
Sbjct: 12 RRGTVKWFDTQKGFGFITPD---DAGDDLFVHQSSIRSDGFRSLAADESVEFE-VEMDNN 67

Query: 63 GKYSA 67
          G+  A
Sbjct: 68 GRPKA 72


>gi|258650835|ref|YP_003199991.1| cold-shock DNA-binding domain-containing protein [Nakamurella
          multipartita DSM 44233]
 gi|258554060|gb|ACV77002.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
          DSM 44233]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFITP    E G DVF+H S + + G  +L E Q VTY   Q
Sbjct: 3  QGTVKWFNAEKGFGFITP---NEGGPDVFVHYSEIQAGGYRSLEENQQVTYTVTQ 54


>gi|53718538|ref|YP_107524.1| cold shock-like protein [Burkholderia pseudomallei K96243]
 gi|53725849|ref|YP_103842.1| cold-shock domain-contain protein [Burkholderia mallei ATCC
          23344]
 gi|67642114|ref|ZP_00440875.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
          horse 4]
 gi|115352619|ref|YP_774458.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria AMMD]
 gi|121599049|ref|YP_991922.1| cold-shock domain-contain protein [Burkholderia mallei SAVP1]
 gi|124383933|ref|YP_001027037.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
          10229]
 gi|126441710|ref|YP_001058009.1| cold shock protein [Burkholderia pseudomallei 668]
 gi|126450006|ref|YP_001081686.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
          10247]
 gi|126453970|ref|YP_001065243.1| cold shock protein [Burkholderia pseudomallei 1106a]
 gi|134281301|ref|ZP_01768010.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
 gi|134296693|ref|YP_001120428.1| cold-shock DNA-binding protein family protein [Burkholderia
          vietnamiensis G4]
 gi|161523955|ref|YP_001578967.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          multivorans ATCC 17616]
 gi|167003876|ref|ZP_02269655.1| cold-shock DNA-binding domain protein [Burkholderia mallei
          PRL-20]
 gi|167561845|ref|ZP_02354761.1| cold-shock domain family protein-related protein [Burkholderia
          oklahomensis EO147]
 gi|167569068|ref|ZP_02361942.1| cold-shock domain family protein-related protein [Burkholderia
          oklahomensis C6786]
 gi|167580101|ref|ZP_02372975.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis TXDOH]
 gi|167585698|ref|ZP_02378086.1| cold-shock domain family protein-related protein [Burkholderia
          ubonensis Bu]
 gi|167618166|ref|ZP_02386797.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis Bt4]
 gi|167718444|ref|ZP_02401680.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei DM98]
 gi|167737494|ref|ZP_02410268.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei 14]
 gi|167814612|ref|ZP_02446292.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei 91]
 gi|167823082|ref|ZP_02454553.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei 9]
 gi|167835723|ref|ZP_02462606.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis MSMB43]
 gi|167844643|ref|ZP_02470151.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei B7210]
 gi|167901628|ref|ZP_02488833.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei NCTC 13177]
 gi|167909877|ref|ZP_02496968.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei 112]
 gi|167917900|ref|ZP_02504991.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei BCC215]
 gi|170697706|ref|ZP_02888794.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171319749|ref|ZP_02908837.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|172061480|ref|YP_001809132.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|189351284|ref|YP_001946912.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|217419769|ref|ZP_03451275.1| cold shock family protein [Burkholderia pseudomallei 576]
 gi|221199249|ref|ZP_03572293.1| cold shock protein [Burkholderia multivorans CGD2M]
 gi|221205849|ref|ZP_03578864.1| cold shock protein [Burkholderia multivorans CGD2]
 gi|221211471|ref|ZP_03584450.1| cold shock protein [Burkholderia multivorans CGD1]
 gi|237811160|ref|YP_002895611.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|242316861|ref|ZP_04815877.1| cold shock family protein [Burkholderia pseudomallei 1106b]
 gi|254181506|ref|ZP_04888103.1| cold shock protein [Burkholderia pseudomallei 1655]
 gi|254196847|ref|ZP_04903271.1| cold shock protein [Burkholderia pseudomallei S13]
 gi|254202546|ref|ZP_04908909.1| cold-shock domain family protein [Burkholderia mallei FMH]
 gi|254207883|ref|ZP_04914233.1| cold-shock domain family protein [Burkholderia mallei JHU]
 gi|254262054|ref|ZP_04953108.1| cold shock family protein [Burkholderia pseudomallei 1710a]
 gi|254296417|ref|ZP_04963874.1| cold shock protein [Burkholderia pseudomallei 406e]
 gi|254298241|ref|ZP_04965693.1| cold shock protein [Burkholderia pseudomallei 406e]
 gi|257140008|ref|ZP_05588270.1| cold-shock domain-contain protein [Burkholderia thailandensis
          E264]
 gi|52208952|emb|CAH34891.1| cold shock-like protein [Burkholderia pseudomallei K96243]
 gi|52429272|gb|AAU49865.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344]
 gi|115282607|gb|ABI88124.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
          AMMD]
 gi|121227859|gb|ABM50377.1| cold-shock domain family protein [Burkholderia mallei SAVP1]
 gi|124291953|gb|ABN01222.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
          10229]
 gi|126221203|gb|ABN84709.1| cold shock family protein [Burkholderia pseudomallei 668]
 gi|126227612|gb|ABN91152.1| cold shock family protein [Burkholderia pseudomallei 1106a]
 gi|126242876|gb|ABO05969.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
          10247]
 gi|134139850|gb|ABO55593.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
          G4]
 gi|134247607|gb|EBA47692.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
 gi|147746793|gb|EDK53870.1| cold-shock domain family protein [Burkholderia mallei FMH]
 gi|147751777|gb|EDK58844.1| cold-shock domain family protein [Burkholderia mallei JHU]
 gi|157806110|gb|EDO83280.1| cold shock protein [Burkholderia pseudomallei 406e]
 gi|157808249|gb|EDO85419.1| cold shock protein [Burkholderia pseudomallei 406e]
 gi|160341384|gb|ABX14470.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
          ATCC 17616]
 gi|169653590|gb|EDS86283.1| cold shock protein [Burkholderia pseudomallei S13]
 gi|170137454|gb|EDT05694.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171095021|gb|EDT40044.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|171993997|gb|ACB64916.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MC40-6]
 gi|184212044|gb|EDU09087.1| cold shock protein [Burkholderia pseudomallei 1655]
 gi|189335306|dbj|BAG44376.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|217397073|gb|EEC37089.1| cold shock family protein [Burkholderia pseudomallei 576]
 gi|221168832|gb|EEE01300.1| cold shock protein [Burkholderia multivorans CGD1]
 gi|221174687|gb|EEE07119.1| cold shock protein [Burkholderia multivorans CGD2]
 gi|221180534|gb|EEE12937.1| cold shock protein [Burkholderia multivorans CGD2M]
 gi|237506154|gb|ACQ98472.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|238523194|gb|EEP86634.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
          horse 4]
 gi|242140100|gb|EES26502.1| cold shock family protein [Burkholderia pseudomallei 1106b]
 gi|243060670|gb|EES42856.1| cold-shock DNA-binding domain protein [Burkholderia mallei
          PRL-20]
 gi|254220743|gb|EET10127.1| cold shock family protein [Burkholderia pseudomallei 1710a]
 gi|325526419|gb|EGD04007.1| cold-shock domain-containing protein [Burkholderia sp. TJI49]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++ VQ
Sbjct: 4  GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQ 54


>gi|326510343|dbj|BAJ87388.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 192

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI+PE   +  DD+F+H+SA+ + G  +L E  +V +D +  D +G
Sbjct: 6  KGTVKWFNVTKGFGFISPE---DGSDDLFVHQSAIKADGYRSLNENDVVEFDVITGD-DG 61

Query: 64 KYSAENL 70
          +  A ++
Sbjct: 62 RTKASDV 68


>gi|319936790|ref|ZP_08011202.1| cold-shock DNA-binding domain-containing protein [Coprobacillus
          sp. 29_1]
 gi|319808058|gb|EFW04630.1| cold-shock DNA-binding domain-containing protein [Coprobacillus
          sp. 29_1]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ G +KW+N +KG+GFIT +G    G D+F+H SA+A +G   L EGQ V+++  + D
Sbjct: 1  MNTGKVKWFNSEKGFGFITVDG----GKDIFVHFSAIAGSGYKTLEEGQNVSFEITEGD 55


>gi|41052630|dbj|BAD08139.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group]
 gi|41052743|dbj|BAD07599.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group]
 gi|125580606|gb|EAZ21537.1| hypothetical protein OsJ_05164 [Oryza sativa Japonica Group]
 gi|187609561|gb|ACD13288.1| cold shock domain protein 1 [Oryza sativa Japonica Group]
 gi|215767546|dbj|BAG99774.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 241

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 38/52 (73%), Gaps = 3/52 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          HRG++KW+N  KG+GFI+P+  +E   D+F+H+S++ + G  +L EG+ V +
Sbjct: 7  HRGTVKWFNDTKGFGFISPDDGSE---DLFVHQSSIKADGFRSLAEGEQVEF 55


>gi|326332603|ref|ZP_08198871.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325949604|gb|EGD41676.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N DKG+GFI  +G    G+DVF+H SA+ S G  +L E Q V +D  Q     
Sbjct: 3  QGTVKWFNADKGFGFIAQDG---GGEDVFVHFSAIQSNGYKSLDENQKVEFDVTQGPKGP 59

Query: 64 KYSAENLKL 72
          +  AEN+++
Sbjct: 60 Q--AENVRV 66


>gi|220933692|ref|YP_002512591.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219995002|gb|ACL71604.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI PE   E G DVF+H SA+ + G   L EGQ V++   Q
Sbjct: 4  GIVKWFNESKGFGFIAPE---EGGADVFVHYSAIQAEGFKTLAEGQRVSFQVQQ 54


>gi|326774945|ref|ZP_08234210.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|326655278|gb|EGE40124.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI  EG    G DVF H S +A+ GL  L EGQ VT+D
Sbjct: 4  GTVKWFNAAKGFGFIEQEGD---GPDVFAHFSNIAAQGLVELIEGQKVTFD 51


>gi|237748947|ref|ZP_04579427.1| cold shock transcription regulator [Oxalobacter formigenes
          OXCC13]
 gi|229380309|gb|EEO30400.1| cold shock transcription regulator [Oxalobacter formigenes
          OXCC13]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   E G+DVF H SA+ S G  +L E Q V+++ V     GK
Sbjct: 4  GTVKWFNDSKGFGFITPD---EGGEDVFAHFSAIKSDGFKSLKENQRVSFE-VTTGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|92114621|ref|YP_574549.1| cold-shock DNA-binding protein family protein [Chromohalobacter
          salexigens DSM 3043]
 gi|91797711|gb|ABE59850.1| cold-shock DNA-binding protein family [Chromohalobacter
          salexigens DSM 3043]
          Length = 68

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI+P+   + GDD+F H S + + G  +L +GQ V+++  Q      
Sbjct: 4  GTVKWFNDTKGYGFISPD---DGGDDLFAHFSEIQAEGFKSLQDGQKVSFEVTQGKKG-- 58

Query: 65 YSAENLKLV 73
            A N+K+V
Sbjct: 59 LQASNIKVV 67


>gi|28898663|ref|NP_798268.1| cold shock transcriptional regulator CspA [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|260364904|ref|ZP_05777475.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          K5030]
 gi|260879696|ref|ZP_05892051.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AN-5034]
 gi|260898831|ref|ZP_05907272.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          Peru-466]
 gi|28806881|dbj|BAC60152.1| cold shock transcriptional regulator CspA [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|308086661|gb|EFO36356.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          Peru-466]
 gi|308093445|gb|EFO43140.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AN-5034]
 gi|308111634|gb|EFO49174.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          K5030]
 gi|328472899|gb|EGF43747.1| cold shock transcriptional regulator CspA [Vibrio
          parahaemolyticus 10329]
          Length = 70

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          GS+KW+N  KG+GFI+PE     G+D+F+H  ++ S G   L+EGQ V+Y
Sbjct: 7  GSVKWFNETKGFGFISPE---NGGEDLFVHFQSIVSTGFKTLSEGQKVSY 53


>gi|89073823|ref|ZP_01160330.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|89050358|gb|EAR55859.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
          Length = 70

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GF+T +     G DVF+H  A+AS G   LTEGQ V++D  Q
Sbjct: 7  GLVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQ 57


>gi|261251826|ref|ZP_05944400.1| cold shock protein CspA [Vibrio orientalis CIP 102891]
 gi|260938699|gb|EEX94687.1| cold shock protein CspA [Vibrio orientalis CIP 102891]
          Length = 70

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFITPE     G DVF+H  A+ S G   L EGQ V+++  Q    G+
Sbjct: 7  GIVKWFNEEKGFGFITPE---NGGADVFVHFRAITSDGFKTLKEGQQVSFEVEQ----GQ 59

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 60 KGPQAANVVP 69


>gi|229031192|ref|ZP_04187201.1| Cold shock protein cspB [Bacillus cereus AH1271]
 gi|229075433|ref|ZP_04208422.1| Cold shock protein cspB [Bacillus cereus Rock4-18]
 gi|229097982|ref|ZP_04228932.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|229104067|ref|ZP_04234742.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|229117001|ref|ZP_04246383.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|228666405|gb|EEL21865.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|228679347|gb|EEL33549.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|228685419|gb|EEL39347.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|228707682|gb|EEL59866.1| Cold shock protein cspB [Bacillus cereus Rock4-18]
 gi|228730119|gb|EEL81090.1| Cold shock protein cspB [Bacillus cereus AH1271]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ VT++  Q +
Sbjct: 1  MQNGKVKWFNSEKGFGFIEVEG----GEDVFVHFSAIQGDGFKTLEEGQEVTFEVEQGN 55


>gi|29831319|ref|NP_825953.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|307324568|ref|ZP_07603775.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|29608434|dbj|BAC72488.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
 gi|306889812|gb|EFN20791.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D  Q    G+
Sbjct: 4  GTVKWFNAEKGFGFIEQDGG---GADVFAHYSNIATQGFRELQEGQKVTFDVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 57 KGPQAENIVP 66


>gi|116491359|ref|YP_810903.1| cold-shock DNA-binding protein family protein [Oenococcus oeni
          PSU-1]
 gi|118586607|ref|ZP_01544047.1| cold-shock protein E [Oenococcus oeni ATCC BAA-1163]
 gi|290890924|ref|ZP_06553988.1| hypothetical protein AWRIB429_1378 [Oenococcus oeni AWRIB429]
 gi|116092084|gb|ABJ57238.1| cold-shock DNA-binding protein family [Oenococcus oeni PSU-1]
 gi|118432922|gb|EAV39648.1| cold-shock protein E [Oenococcus oeni ATCC BAA-1163]
 gi|290479323|gb|EFD87983.1| hypothetical protein AWRIB429_1378 [Oenococcus oeni AWRIB429]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N DKGYGFIT     ++G DVF+H SA+ + G  +L EGQ VT++
Sbjct: 1  METGTVKWFNADKGYGFIT----RDNGGDVFVHFSAIQTDGFKSLDEGQKVTFE 50


>gi|17549274|ref|NP_522614.1| cold shock-like transcription regulator protein [Ralstonia
          solanacearum GMI1000]
 gi|83749154|ref|ZP_00946157.1| Cold shock protein [Ralstonia solanacearum UW551]
 gi|300694069|ref|YP_003750042.1| cold shock-like protein [Ralstonia solanacearum PSI07]
 gi|17431526|emb|CAD18204.1| probable cold shock activator transcription regulator protein
          [Ralstonia solanacearum GMI1000]
 gi|83724150|gb|EAP71325.1| Cold shock protein [Ralstonia solanacearum UW551]
 gi|299069468|emb|CBJ40735.1| Cold shock protein [Ralstonia solanacearum CMR15]
 gi|299076106|emb|CBJ35417.1| Cold shock-like protein [Ralstonia solanacearum PSI07]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++  Q
Sbjct: 4  GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQ 54


>gi|333027864|ref|ZP_08455928.1| putative cold shock protein [Streptomyces sp. Tu6071]
 gi|332747716|gb|EGJ78157.1| putative cold shock protein [Streptomyces sp. Tu6071]
          Length = 86

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +AS+G   L EGQ V +D  Q      
Sbjct: 22 GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIASSGFRELIEGQKVEFDVTQGQKG-- 76

Query: 65 YSAENL 70
            AEN+
Sbjct: 77 LQAENI 82


>gi|310778967|ref|YP_003967300.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
 gi|309748290|gb|ADO82952.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFIT    +E G+D+F+H S +   G   L EG+ VT+D V+
Sbjct: 3  KGTVKWFNSEKGFGFIT----SEEGNDLFVHFSEINKPGFKTLEEGEEVTFDVVE 53


>gi|238919337|ref|YP_002932852.1| hypothetical protein NT01EI_1429 [Edwardsiella ictaluri 93-146]
 gi|269138654|ref|YP_003295355.1| major cold shock protein [Edwardsiella tarda EIB202]
 gi|238868906|gb|ACR68617.1| conserved domain protein [Edwardsiella ictaluri 93-146]
 gi|267984315|gb|ACY84144.1| major cold shock protein [Edwardsiella tarda EIB202]
 gi|304558665|gb|ADM41329.1| Cold shock protein CspA [Edwardsiella tarda FL6-60]
          Length = 71

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFITP+     G D+F+H SA+ S G  +L EGQ V ++ VQ  A   
Sbjct: 7  GLVKWFNADKGFGFITPD---NGGSDIFVHFSAIQSNGYKSLDEGQKVAFE-VQTGAAKG 62

Query: 65 YSAENL 70
           SA N+
Sbjct: 63 PSAINV 68


>gi|302552922|ref|ZP_07305264.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
 gi|302470540|gb|EFL33633.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G DVF H S +A+ G   L EGQ V++D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQEG---GGPDVFAHYSNIAAQGFRELLEGQKVSFDVAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|197123689|ref|YP_002135640.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|196173538|gb|ACG74511.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFIT +G    G+DVF H +A+ S G  +L EGQ V +D  +
Sbjct: 4  GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQSEGFRSLAEGQKVEFDVTK 54


>gi|152967548|ref|YP_001363332.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
          SRS30216]
 gi|151362065|gb|ABS05068.1| putative cold-shock DNA-binding domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P   T+ G DVF+H SA+A  G  NL E   V Y+  Q
Sbjct: 3  QGTVKWFNGEKGFGFIAP---TDGGPDVFVHYSAIAGNGFRNLEENDQVEYEVTQ 54


>gi|190575103|ref|YP_001972948.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
 gi|190013025|emb|CAQ46657.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
          Length = 69

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI    S E+G+DVF+H  A+ + G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDAKGFGFI----SRENGEDVFVHFRAIQTQGFKSLKEGQKVTFTVVQ 56


>gi|134300911|ref|YP_001114407.1| cold-shock DNA-binding domain-containing protein
          [Desulfotomaculum reducens MI-1]
 gi|134053611|gb|ABO51582.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens
          MI-1]
          Length = 65

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KGYGFI      E G DVF+H SA+   G  +L EGQ V +D V+
Sbjct: 3  GKVKWFNAEKGYGFI----EREEGGDVFVHFSAIQEEGFKSLAEGQEVEFDIVE 52


>gi|16262844|ref|NP_435637.1| CspA6 cold shock protein transcriptional regulator [Sinorhizobium
          meliloti 1021]
 gi|307322440|ref|ZP_07601795.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|307322706|ref|ZP_07602031.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|14523481|gb|AAK65049.1| CspA6 cold shock protein [Sinorhizobium meliloti 1021]
 gi|306891645|gb|EFN22506.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306891926|gb|EFN22757.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++  DKG+GFITP+     G DVF+H SA+   G  +L +GQ V+Y+  Q+   GK
Sbjct: 4  GTVKFFAQDKGFGFITPD---NGGPDVFVHISALGFGG--SLQDGQKVSYELGQDRKTGK 58

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 59 SKAENVSIL 67


>gi|72383861|ref|YP_293215.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72123204|gb|AAZ65358.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + GDD+F H S V  +G  +L EGQ V+++ V+    GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGDDLFAHFSEVQGSGFKSLQEGQKVSFE-VKQGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|284045400|ref|YP_003395740.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
 gi|283949621|gb|ADB52365.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N DKG+GFITP+  ++   D+F+H SA+   G  +L EG  V+YD  Q
Sbjct: 4  GTVKWFNDDKGFGFITPDDQSK---DLFVHHSAITGDGFKSLAEGAKVSYDAEQ 54


>gi|168022724|ref|XP_001763889.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684894|gb|EDQ71293.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 198

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   + GDD+F+H++++ + G  +L EG++V +  V++  +G+
Sbjct: 16 GKVKWFNSSKGFGFITPD---KGGDDLFVHQTSIHAEGFRSLREGEVVEFQ-VESSEDGR 71

Query: 65 YSA 67
            A
Sbjct: 72 TKA 74


>gi|301058337|ref|ZP_07199370.1| cold-shock DNA-binding domain protein [delta proteobacterium
          NaphS2]
 gi|300447573|gb|EFK11305.1| cold-shock DNA-binding domain protein [delta proteobacterium
          NaphS2]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      E G DVF+H SA+ +AG  +L EG+ VT+D  Q
Sbjct: 4  GTVKWFNDQKGFGFI----EQEDGPDVFVHHSAINAAGFKSLNEGERVTFDIEQ 53


>gi|302543455|ref|ZP_07295797.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302461073|gb|EFL24166.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q VT+D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINASGFRSLEENQAVTFDVTQGPKGPQ 60

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 61 --AENVSAV 67


>gi|295837165|ref|ZP_06824098.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|302521137|ref|ZP_07273479.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
 gi|318058035|ref|ZP_07976758.1| cold shock protein [Streptomyces sp. SA3_actG]
 gi|318079486|ref|ZP_07986818.1| cold shock protein [Streptomyces sp. SA3_actF]
 gi|295826381|gb|EFG64808.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|302430032|gb|EFL01848.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q VT+D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVTFDVTQ 54


>gi|229086124|ref|ZP_04218344.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
 gi|228697183|gb|EEL49948.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ VT++  Q +
Sbjct: 1  MQNGKVKWFNSEKGFGFIEVEG----GEDVFVHFSAIQGDGFKTLEEGQEVTFEVEQGN 55


>gi|297582825|ref|YP_003698605.1| cold-shock DNA-binding domain-containing protein [Bacillus
          selenitireducens MLS10]
 gi|297141282|gb|ADH98039.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens
          MLS10]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI      E GDDVF+H SA+ + G   L EGQ V ++ V+ +  G 
Sbjct: 4  GKVKWFNAEKGFGFI----EREDGDDVFVHFSAIQAEGFKTLDEGQDVEFEIVEGN-RGP 58

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 59 QAANVVKL 66


>gi|146283383|ref|YP_001173536.1| cold acclimation protein B [Pseudomonas stutzeri A1501]
 gi|146308538|ref|YP_001189003.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina ymp]
 gi|145571588|gb|ABP80694.1| cold acclimation protein B [Pseudomonas stutzeri A1501]
 gi|145576739|gb|ABP86271.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
 gi|327481776|gb|AEA85086.1| cold acclimation protein B [Pseudomonas stutzeri DSM 4166]
          Length = 70

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
            G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ V++  VQ
Sbjct: 5  QNGTVKWFNDEKGFGFITP----ESGPDLFVHFRAIEGNGFKSLKEGQKVSFIAVQ 56


>gi|320109064|ref|YP_004184654.1| cold-shock DNA-binding domain-containing protein [Terriglobus
          saanensis SP1PR4]
 gi|319927585|gb|ADV84660.1| cold-shock DNA-binding domain protein [Terriglobus saanensis
          SP1PR4]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GF+    S ++G+DVF+H +A+ + G  +L EGQ V ++ V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFL----SRDNGEDVFVHHTAIQAQGFRSLQEGQRVEFNVVKGPK 56

Query: 62 NGKYSAENLKLVP 74
             + AEN++ V 
Sbjct: 57 G--WQAENVRAVA 67


>gi|294102753|ref|YP_003554611.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
 gi|293617733|gb|ADE57887.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFIT    ++ G DVF+H S++   G   L EGQ VT++ V   A
Sbjct: 1  MSQGTVKWFNATKGYGFIT----SDEGKDVFVHFSSIQGDGFKTLDEGQRVTFE-VTAGA 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 KGDQAANVVKL 66


>gi|227535413|ref|ZP_03965462.1| CspA family cold shock transcriptional regulator [Lactobacillus
          paracasei subsp. paracasei ATCC 25302]
 gi|227187009|gb|EEI67076.1| CspA family cold shock transcriptional regulator [Lactobacillus
          paracasei subsp. paracasei ATCC 25302]
          Length = 99

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N +KGYGFIT     E G DVF+H SA+   G   L EGQ VT++   +D
Sbjct: 33 LMEHGTVKWFNAEKGYGFIT----REDGSDVFVHFSAIQGDGYKTLEEGQAVTFEVEDSD 88


>gi|103487825|ref|YP_617386.1| cold-shock DNA-binding domain-containing protein [Sphingopyxis
           alaskensis RB2256]
 gi|98977902|gb|ABF54053.1| cold-shock DNA-binding protein family [Sphingopyxis alaskensis
           RB2256]
          Length = 249

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++K++NP KG+GF+  +   + G+DVF+H SAV  AGL  L  GQ + +  V+   NG
Sbjct: 85  QGTVKFFNPSKGFGFVARD---DGGEDVFVHISAVEQAGLQGLASGQPLAFTLVER--NG 139

Query: 64  KYSAENLKL 72
           K SA +LK+
Sbjct: 140 KVSAIDLKI 148



 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AG+  L EG  V +D ++ D  GK
Sbjct: 183 GTVKFFNTTKGFGFIARD---DGQADAFVHISAVQRAGMAGLEEGDRVAFD-IEVDDRGK 238

Query: 65  YSAENLK 71
           ++A NL+
Sbjct: 239 FAAVNLQ 245


>gi|332670111|ref|YP_004453119.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332339149|gb|AEE45732.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
          484]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N +KGYGFI  +G    G DVF+H SA+ + G  +L EGQ V ++  Q D
Sbjct: 3  QGAVKWFNAEKGYGFIAQDG---GGADVFVHYSAIDTQGYRSLDEGQRVEFEITQGD 56


>gi|302543183|ref|ZP_07295525.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302460801|gb|EFL23894.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D  Q    G+
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GADVFAHYSNIATQGFRELQEGQKVTFDVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 57 KGPQAENIVP 66


>gi|295839487|ref|ZP_06826420.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|302518459|ref|ZP_07270801.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
 gi|318062555|ref|ZP_07981276.1| cold shock protein [Streptomyces sp. SA3_actG]
 gi|318078420|ref|ZP_07985752.1| cold shock protein [Streptomyces sp. SA3_actF]
 gi|295827504|gb|EFG65433.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|302427354|gb|EFK99169.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
          Length = 68

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +AS+G   L EGQ V +D  Q      
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIASSGFRELIEGQKVEFDVTQGQKG-- 58

Query: 65 YSAENL 70
            AEN+
Sbjct: 59 LQAENI 64


>gi|153006954|ref|YP_001381279.1| cold-shock DNA-binding domain-containing protein
          [Anaeromyxobacter sp. Fw109-5]
 gi|152030527|gb|ABS28295.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
          sp. Fw109-5]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFIT +G    G+DVF H +A+ + G   L EGQ V +D VQ    G 
Sbjct: 4  GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQTQGFRTLAEGQKVEFD-VQRGPKGL 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|90581456|ref|ZP_01237250.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|90437317|gb|EAS62514.1| putative Cold shock-like protein [Vibrio angustum S14]
          Length = 70

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GF+T +     G DVF+H  A+AS G   LTEGQ V++D  Q
Sbjct: 7  GLVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQ 57


>gi|87201154|ref|YP_498411.1| cold-shock DNA-binding protein family protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136835|gb|ABD27577.1| cold-shock DNA-binding protein family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 267

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G +K++N  KG+GFI  E   + G+DVF+H SAV  AGL  L EGQ + ++ V  D  G
Sbjct: 113 KGVVKFFNGQKGFGFIQRE---DGGEDVFVHISAVERAGLEGLAEGQQLEFNLV--DRGG 167

Query: 64  KYSAENLKLV 73
           K SA +L++V
Sbjct: 168 KISAADLQVV 177



 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 6/71 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFIT +   +   D F+H SAV  +GL  L EG  + +D ++ D  GK
Sbjct: 201 GTVKFFNAMKGFGFITRD---DGQPDAFVHISAVERSGLRELNEGDKLEFD-LEVDRRGK 256

Query: 65  YSAENLKLVPK 75
           YSA N  LVP+
Sbjct: 257 YSAVN--LVPR 265


>gi|309777854|ref|ZP_07672800.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914415|gb|EFP60209.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 65

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +KW+N +KGYGFI  E     G D+F+H S +   G  +L EGQ VT+D V +D
Sbjct: 2  KGKVKWFNAEKGYGFINGE----DGKDIFVHYSHIQQEGYKSLEEGQEVTFDAVDSD 54


>gi|254380611|ref|ZP_04995977.1| cold-shock domain containing protein [Streptomyces sp. Mg1]
 gi|194339522|gb|EDX20488.1| cold-shock domain containing protein [Streptomyces sp. Mg1]
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDGG---GADVFAHYSNIAAQGFRELNEGQKVTFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|251796131|ref|YP_003010862.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
 gi|247543757|gb|ACT00776.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
          Length = 65

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI    S E+G+DVF+H S++   G   L EGQ V ++  Q +   
Sbjct: 2  KGTVKWFNAEKGYGFI----SVENGEDVFVHYSSIQGDGFKALEEGQSVEFEITQGNRGA 57

Query: 64 KYS 66
          + S
Sbjct: 58 QAS 60


>gi|172057695|ref|YP_001814155.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|172057697|ref|YP_001814157.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|171990216|gb|ACB61138.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
          255-15]
 gi|171990218|gb|ACB61140.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
          255-15]
          Length = 66

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 39/54 (72%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N +KG+GFI      E+GDDVF+H SA+ + G  +L EGQ V+++
Sbjct: 1  MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQTDGFKSLDEGQEVSFE 50


>gi|332798799|ref|YP_004460298.1| cold-shock DNA-binding domain-containing protein
          [Tepidanaerobacter sp. Re1]
 gi|332696534|gb|AEE90991.1| cold-shock DNA-binding domain protein [Tepidanaerobacter sp. Re1]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI  EG      DVF+H SA+   G   L EG  V +D V+     
Sbjct: 2  QGKVKWFNQEKGYGFIEVEGDK----DVFVHYSAIQQEGFKTLKEGDSVEFDVVEGQKGP 57

Query: 64 KYSAENLKLV 73
          +  AEN+ LV
Sbjct: 58 Q--AENVTLV 65


>gi|229032524|ref|ZP_04188490.1| Cold shock protein cspB [Bacillus cereus AH1271]
 gi|229099341|ref|ZP_04230272.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|229105500|ref|ZP_04236141.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|229118352|ref|ZP_04247708.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|228665182|gb|EEL20668.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|228677925|gb|EEL32161.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|228684159|gb|EEL38106.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|228728782|gb|EEL79792.1| Cold shock protein cspB [Bacillus cereus AH1271]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 1  MQTGKVKWFNGEKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVSFEIVEGN 55


>gi|330504702|ref|YP_004381571.1| cold-shock domain-containing protein [Pseudomonas mendocina
          NK-01]
 gi|328918988|gb|AEB59819.1| cold-shock domain-containing protein [Pseudomonas mendocina
          NK-01]
          Length = 70

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
            G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ V++  VQ
Sbjct: 5  QNGTVKWFNDEKGFGFITP----ESGPDLFVHFRAIEGNGFKSLKEGQKVSFVAVQ 56


>gi|323488057|ref|ZP_08093310.1| cold shock protein [Planococcus donghaensis MPA1U2]
 gi|323398325|gb|EGA91118.1| cold shock protein [Planococcus donghaensis MPA1U2]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N +KG+GFI  EG    GDDVF+H SA+   G   L EGQ V ++
Sbjct: 1  MQEGTVKWFNSEKGFGFIEVEG----GDDVFVHFSAIQGEGFKTLDEGQRVEFE 50


>gi|27468004|ref|NP_764641.1| major cold shock protein CspA [Staphylococcus epidermidis ATCC
          12228]
 gi|73662658|ref|YP_301439.1| cold shock protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|228476062|ref|ZP_04060770.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|282876159|ref|ZP_06285026.1| major cold shock protein CspA [Staphylococcus epidermidis SK135]
 gi|314936453|ref|ZP_07843800.1| conserved domain protein [Staphylococcus hominis subsp. hominis
          C80]
 gi|81842847|sp|Q8CP90|CSPA_STAES RecName: Full=Cold shock protein CspA
 gi|118572257|sp|Q5HPE0|CSPA_STAEQ RecName: Full=Cold shock protein CspA
 gi|118572259|sp|Q49XK3|CSPA_STAS1 RecName: Full=Cold shock protein CspA
 gi|27315549|gb|AAO04683.1|AE016747_180 major cold shock protein CspA [Staphylococcus epidermidis ATCC
          12228]
 gi|72495173|dbj|BAE18494.1| cold shock protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|228269885|gb|EEK11365.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|281295184|gb|EFA87711.1| major cold shock protein CspA [Staphylococcus epidermidis SK135]
 gi|313655072|gb|EFS18817.1| conserved domain protein [Staphylococcus hominis subsp. hominis
          C80]
 gi|319400756|gb|EFV88975.1| cold shock protein cspB [Staphylococcus epidermidis FRI909]
 gi|329729371|gb|EGG65777.1| major cold shock protein CspA [Staphylococcus epidermidis VCU144]
 gi|329732908|gb|EGG69253.1| major cold shock protein CspA [Staphylococcus epidermidis VCU028]
 gi|329735220|gb|EGG71512.1| major cold shock protein CspA [Staphylococcus epidermidis VCU045]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|154247142|ref|YP_001418100.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
          autotrophicus Py2]
 gi|154161227|gb|ABS68443.1| putative cold-shock DNA-binding domain protein [Xanthobacter
          autotrophicus Py2]
          Length = 68

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFI  +   E G DVF+H S V  +GL+ L +GQ V++D V  D  GK
Sbjct: 4  GTVKFFNSQKGFGFIQQD---EGGPDVFVHISDVERSGLYGLNDGQKVSFDIVA-DNRGK 59

Query: 65 YSAENL 70
            A NL
Sbjct: 60 SKASNL 65


>gi|210622637|ref|ZP_03293297.1| hypothetical protein CLOHIR_01245 [Clostridium hiranonis DSM
          13275]
 gi|210154138|gb|EEA85144.1| hypothetical protein CLOHIR_01245 [Clostridium hiranonis DSM
          13275]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI+ EG     DDVF+H SA+ + G  +L EGQ V ++ V + A G 
Sbjct: 4  GVVKWFNNEKGFGFISVEGE----DDVFVHFSAIQTEGYKSLEEGQKVEFEVV-DGAKGP 58

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 59 QAANVVKL 66


>gi|260774268|ref|ZP_05883183.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
 gi|260611229|gb|EEX36433.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
          Length = 70

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N  KG+GF+TP+     G DVF+H +++AS G   L EGQ V+++  Q
Sbjct: 7  GSVKWFNETKGFGFLTPD---NGGSDVFVHFNSIASEGFKTLAEGQKVSFNVEQ 57


>gi|154248732|ref|YP_001409557.1| cold-shock DNA-binding domain-containing protein
          [Fervidobacterium nodosum Rt17-B1]
 gi|154152668|gb|ABS59900.1| putative cold-shock DNA-binding domain protein [Fervidobacterium
          nodosum Rt17-B1]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KGYGFIT     E G+D+F+H SA+ + G   L EG  V ++ VQN   G
Sbjct: 2  KGTVKWFDAKKGYGFITK----EDGEDIFVHYSAIQAEGYKTLKEGDKVEFE-VQNGQKG 56

Query: 64 KYSAENLKLV 73
            +A N+K++
Sbjct: 57 PQAA-NVKVI 65


>gi|219119929|ref|XP_002180715.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408188|gb|EEC48123.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 71

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KG+GFI P+  +E   DVF+H+++V S G  +L EG+ V +  ++ D  G+
Sbjct: 9  GTVKWFDVKKGFGFIVPDDGSE---DVFVHQTSVHSEGFRSLAEGEPVEFS-IKEDDRGR 64

Query: 65 YSAENL 70
           SAE +
Sbjct: 65 KSAERV 70


>gi|220911902|ref|YP_002487211.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|219858780|gb|ACL39122.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI+P+ S++   DVF H SA+ S+G  +L E Q V++D  Q
Sbjct: 4  GTVKWFNAEKGFGFISPDDSSQ---DVFAHYSAINSSGFRSLEENQKVSFDTEQ 54


>gi|294141223|ref|YP_003557201.1| cold shock-like protein cspA [Shewanella violacea DSS12]
 gi|22256742|sp|Q9S1B7|CSPA_SHEVD RecName: Full=Cold shock-like protein CspA
 gi|5869504|dbj|BAA84217.1| CspA [Shewanella violacea]
 gi|293327692|dbj|BAJ02423.1| cold shock-like protein cspA [Shewanella violacea DSS12]
          Length = 70

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N DKG+GF+T +     G DVF+H  A+AS G   L EGQ VT++  Q
Sbjct: 7  GTVKWFNEDKGFGFLTQD---NGGADVFVHFRAIASEGFKTLDEGQKVTFEVEQ 57


>gi|150020181|ref|YP_001305535.1| cold-shock DNA-binding domain-containing protein [Thermosipho
          melanesiensis BI429]
 gi|149792702|gb|ABR30150.1| putative cold-shock DNA-binding domain protein [Thermosipho
          melanesiensis BI429]
          Length = 65

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 5/64 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KGYGFIT     E G+D+F+H SA+ + G   L EGQ V ++ VQ+   G
Sbjct: 2  KGTVKWFDAKKGYGFIT----KEDGEDIFVHWSAIQTEGFKTLKEGQEVEFE-VQDGQKG 56

Query: 64 KYSA 67
            +A
Sbjct: 57 PQAA 60


>gi|148378284|ref|YP_001252825.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932083|ref|YP_001382685.1| cold shock protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937821|ref|YP_001386236.1| cold shock protein [Clostridium botulinum A str. Hall]
 gi|153940157|ref|YP_001389651.1| cold shock protein [Clostridium botulinum F str. Langeland]
 gi|168177625|ref|ZP_02612289.1| cold shock protein [Clostridium botulinum NCTC 2916]
 gi|168182105|ref|ZP_02616769.1| cold shock protein [Clostridium botulinum Bf]
 gi|170755331|ref|YP_001779935.1| cold shock protein [Clostridium botulinum B1 str. Okra]
 gi|187777110|ref|ZP_02993583.1| hypothetical protein CLOSPO_00655 [Clostridium sporogenes ATCC
          15579]
 gi|226947506|ref|YP_002802597.1| cold shock protein [Clostridium botulinum A2 str. Kyoto]
 gi|237793603|ref|YP_002861155.1| cold shock protein [Clostridium botulinum Ba4 str. 657]
 gi|148287768|emb|CAL81834.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928127|gb|ABS33627.1| cold shock protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933735|gb|ABS39234.1| cold shock protein [Clostridium botulinum A str. Hall]
 gi|152936053|gb|ABS41551.1| cold shock protein [Clostridium botulinum F str. Langeland]
 gi|169120543|gb|ACA44379.1| cold shock protein [Clostridium botulinum B1 str. Okra]
 gi|182670885|gb|EDT82859.1| cold shock protein [Clostridium botulinum NCTC 2916]
 gi|182674516|gb|EDT86477.1| cold shock protein [Clostridium botulinum Bf]
 gi|187774038|gb|EDU37840.1| hypothetical protein CLOSPO_00655 [Clostridium sporogenes ATCC
          15579]
 gi|226842860|gb|ACO85526.1| cold shock protein [Clostridium botulinum A2 str. Kyoto]
 gi|229261379|gb|ACQ52412.1| cold shock protein [Clostridium botulinum Ba4 str. 657]
 gi|295317741|gb|ADF98118.1| cold shock protein [Clostridium botulinum F str. 230613]
 gi|322804547|emb|CBZ02098.1| cold shock protein CspG [Clostridium botulinum H04402 065]
          Length = 65

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFIT     E G+DVF H S + S G  +L EGQ V+YD V+     +
Sbjct: 3  GTVKWFNGEKGFGFIT----GEDGNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKGPQ 58

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 59 --AENITII 65


>gi|87200599|ref|YP_497856.1| cold-shock DNA-binding protein family protein [Novosphingobium
          aromaticivorans DSM 12444]
 gi|87136280|gb|ABD27022.1| cold-shock DNA-binding protein family [Novosphingobium
          aromaticivorans DSM 12444]
          Length = 68

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKGYGFI P+G      D F+H SAV  +G+  L + Q V Y+ ++ D  GK
Sbjct: 4  GTVKFFNVDKGYGFIAPDGGAP---DNFVHISAVERSGMATLDKDQRVQYE-LETDKRGK 59

Query: 65 YSAENLK 71
           SA NL+
Sbjct: 60 TSAVNLQ 66


>gi|114321823|ref|YP_743506.1| cold-shock DNA-binding protein family protein [Alkalilimnicola
          ehrlichii MLHE-1]
 gi|114228217|gb|ABI58016.1| cold-shock DNA-binding protein family [Alkalilimnicola ehrlichii
          MLHE-1]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KG+GFITP   T+ G DVF+H SA+  +G  +L EGQ V ++  QN   G 
Sbjct: 4  GTVKWFDDAKGFGFITP---TDGGKDVFVHHSAINGSGFKSLAEGQQVQFE-TQNTPKGL 59

Query: 65 YSA 67
           +A
Sbjct: 60 AAA 62


>gi|328952776|ref|YP_004370110.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
          DSM 11109]
 gi|328453100|gb|AEB08929.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
          DSM 11109]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M   G++KW+N  KG+GFI    S ESG DVF+H SA+ + G  +L+E Q V ++ VQ
Sbjct: 1  MKENGTVKWFNNSKGFGFI----SRESGPDVFVHHSAIQTDGYRSLSENQAVEFEVVQ 54


>gi|313901283|ref|ZP_07834770.1| cold shock protein CspB [Clostridium sp. HGF2]
 gi|312953891|gb|EFR35572.1| cold shock protein CspB [Clostridium sp. HGF2]
          Length = 65

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +KW+N +KGYGFI  E     G D+F+H S +   G  +L EGQ VT+D V +D
Sbjct: 2  KGKVKWFNAEKGYGFINGE----DGKDIFVHYSHIQQEGYKSLEEGQEVTFDTVDSD 54


>gi|242373700|ref|ZP_04819274.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W1]
 gi|242348668|gb|EES40270.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W1]
          Length = 77

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D
Sbjct: 11 IMKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQSVEFEVVEGD 66

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 67 -RGPQAANVVKL 77


>gi|152995681|ref|YP_001340516.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
          MWYL1]
 gi|150836605|gb|ABR70581.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
          MWYL1]
          Length = 69

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI      ESG DVF H SA+AS+G   L EGQ V  ++V      
Sbjct: 6  KGTVKWFNEIKGFGFI----EQESGPDVFAHFSAIASSGFKTLAEGQQV--EFVVTAGQK 59

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 60 GPQAENITVL 69


>gi|255065177|ref|ZP_05317032.1| cold shock transcription regulator protein [Neisseria sicca ATCC
          29256]
 gi|269214299|ref|ZP_06158484.1| cold shock transcription regulator protein [Neisseria lactamica
          ATCC 23970]
 gi|288575418|ref|ZP_05976942.2| cold shock transcription regulator protein [Neisseria mucosa ATCC
          25996]
 gi|297250909|ref|ZP_06865276.2| cold shock transcription regulator protein [Neisseria
          polysaccharea ATCC 43768]
 gi|255050598|gb|EET46062.1| cold shock transcription regulator protein [Neisseria sicca ATCC
          29256]
 gi|269210156|gb|EEZ76611.1| cold shock transcription regulator protein [Neisseria lactamica
          ATCC 23970]
 gi|288568095|gb|EFC89655.1| cold shock transcription regulator protein [Neisseria mucosa ATCC
          25996]
 gi|296837712|gb|EFH21650.1| cold shock transcription regulator protein [Neisseria
          polysaccharea ATCC 43768]
          Length = 80

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D V   
Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFD-VTTG 68

Query: 61 ANGKYSA 67
            GK +A
Sbjct: 69 PKGKQAA 75


>gi|118595186|ref|ZP_01552533.1| putative cold-shock protein [Methylophilales bacterium HTCC2181]
 gi|118440964|gb|EAV47591.1| putative cold-shock protein [Methylophilales bacterium HTCC2181]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITPE   + GDD+F H SA+   G  +L EG+ VT++ V +   GK
Sbjct: 4  GTVKWFNDSKGFGFITPE---DGGDDLFAHFSAIVDDGYKSLKEGETVTFE-VTDGPKGK 59

Query: 65 YSA 67
           ++
Sbjct: 60 QAS 62


>gi|114797581|ref|YP_759686.1| cold shock protein [Hyphomonas neptunium ATCC 15444]
 gi|114737755|gb|ABI75880.1| cold shock protein [Hyphomonas neptunium ATCC 15444]
          Length = 69

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K++N  KG+GFI+P   T  G+DVF+H S +  +G+ +L EGQ V++D   +  +GK
Sbjct: 4  GIVKFFNSQKGFGFISP---TNGGNDVFVHISTLERSGIAHLNEGQKVSFDTAIDKRSGK 60

Query: 65 YSAENLKL 72
           +   ++L
Sbjct: 61 SAVSAIEL 68


>gi|327441552|dbj|BAK17917.1| cold shock protein [Solibacillus silvestris StLB046]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ V +D
Sbjct: 1  MQQGTVKWFNSEKGFGFIEVEG----GNDVFVHFSAIQGEGFKTLDEGQKVEFD 50


>gi|317122838|ref|YP_004102841.1| cold-shock DNA-binding protein family [Thermaerobacter
          marianensis DSM 12885]
 gi|315592818|gb|ADU52114.1| cold-shock DNA-binding protein family [Thermaerobacter
          marianensis DSM 12885]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFIT +   +   DVF+H SA+   G   L EGQ VT+D V+ +   K
Sbjct: 3  GTVKWFNAEKGYGFITRD---DGQGDVFVHFSAIVGTGYRTLEEGQKVTFDVVEGEKGPK 59

Query: 65 YSAENLKLV 73
            A+N+ ++
Sbjct: 60 --AQNVVVL 66


>gi|302391875|ref|YP_003827695.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM
           5501]
 gi|302203952|gb|ADL12630.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 110

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +KW++  KGYGFI  E     GDD+F+H +A+   G  +L E Q V+++ V++D    
Sbjct: 48  GKVKWFDTKKGYGFIEQE----DGDDIFVHYTAIQEEGFKDLEEEQQVSFEVVESDKG-- 101

Query: 65  YSAENLKLV 73
             AEN+  V
Sbjct: 102 LQAENVTKV 110


>gi|262374770|ref|ZP_06068038.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
 gi|262310301|gb|EEY91397.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
          Length = 71

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KG+GFI      ESG DVF H S ++S+G   L EGQ+V +   Q
Sbjct: 6  IVKGTVKWFNETKGFGFI----QQESGPDVFAHFSEISSSGFKTLMEGQMVEFSVAQ 58


>gi|239980196|ref|ZP_04702720.1| cold shock protein [Streptomyces albus J1074]
 gi|291452050|ref|ZP_06591440.1| cold shock protein [Streptomyces albus J1074]
 gi|291354999|gb|EFE81901.1| cold shock protein [Streptomyces albus J1074]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q VT+D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVTFDVTQ 54


>gi|223973253|gb|ACN30814.1| unknown [Zea mays]
          Length = 444

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           RG++KW+N  KG+GFI+PE  +E   D+F+H+S++ S G  +L EG+ V +   + D +
Sbjct: 7  QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD-D 62

Query: 63 GKYSAENL 70
          G+  A ++
Sbjct: 63 GRTKAVDV 70


>gi|153875276|ref|ZP_02003150.1| Cold-shock DNA-binding domain protein [Beggiatoa sp. PS]
 gi|152068260|gb|EDN66850.1| Cold-shock DNA-binding domain protein [Beggiatoa sp. PS]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + RG+IKW+N  KG+GFI+P   T+ G DVF+H S +   G   L EGQ V ++
Sbjct: 1  MMRGTIKWFNETKGFGFISP---TDDGRDVFVHYSCIQQKGFKTLKEGQEVEFE 51


>gi|300310729|ref|YP_003774821.1| cold-shock DNA-binding domain-containing protein [Herbaspirillum
          seropedicae SmR1]
 gi|300073514|gb|ADJ62913.1| cold-shock DNA-binding domain protein [Herbaspirillum seropedicae
          SmR1]
          Length = 68

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + G+D+F H SA+   G   L EGQ V +D  Q
Sbjct: 4  GTVKWFNDSKGFGFITPD---DGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQ 54


>gi|256390666|ref|YP_003112230.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256356892|gb|ACU70389.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI+ +   E G DVF+H SA+ S+G  +L E Q V ++  Q     
Sbjct: 3  QGTVKWFNGEKGYGFISQD---EGGPDVFVHFSAIQSSGYRSLEENQRVEFEVTQGPKGA 59

Query: 64 KYSAENLKLV 73
          +  AEN++ V
Sbjct: 60 Q--AENVRPV 67


>gi|228475724|ref|ZP_04060442.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|228270506|gb|EEK11941.1| conserved hypothetical protein [Staphylococcus hominis SK119]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 8/73 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI      E GDDVF+H S +A+ G   L EGQ V +D  +   
Sbjct: 1  MNNGTVKWFNAEKGFGFI----EREDGDDVFVHFSGIATDGYKTLEEGQKVEFDITE--- 53

Query: 62 NGKYSAENLKLVP 74
           G+   +   +VP
Sbjct: 54 -GQRGKQATNVVP 65


>gi|116326593|ref|YP_796514.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
          subsp. cremoris SK11]
 gi|190571792|ref|YP_001966471.1| CSPD [Lactococcus lactis]
 gi|281491666|ref|YP_003353646.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|76574948|gb|ABA47417.1| cold shock protein D [Lactococcus lactis]
 gi|108736191|gb|ABG00320.1| CSPD [Lactococcus lactis]
 gi|116108961|gb|ABJ74083.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
          cremoris SK11]
 gi|281375384|gb|ADA64897.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N DKG+GFIT    +E G D+F H SA+ S G   L EGQ V +D
Sbjct: 4  GTVKWFNADKGFGFIT----SEEGKDLFAHFSAIQSDGFKTLDEGQKVEFD 50


>gi|319936791|ref|ZP_08011203.1| cold shock protein cspD [Coprobacillus sp. 29_1]
 gi|319808059|gb|EFW04631.1| cold shock protein cspD [Coprobacillus sp. 29_1]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ G +KW+N +KG+GFIT +G    G D+F+H +++A  G  +L EGQ V++D  Q D
Sbjct: 1  MNTGKVKWFNSEKGFGFITVDG----GKDIFVHYTSIAGHGYKSLEEGQNVSFDVTQGD 55


>gi|307107761|gb|EFN56003.1| hypothetical protein CHLNCDRAFT_145396 [Chlorella variabilis]
          Length = 301

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFIT E   ES D+VF+H+S + + G  +L EG+ V +D V  D +GK
Sbjct: 15 GTVKWFNSTKGYGFITCE---ESEDEVFVHQSNIETTGYRSLKEGEEVEFDLVVAD-DGK 70

Query: 65 YSAENL 70
            A  L
Sbjct: 71 KKAFRL 76


>gi|161869773|ref|YP_001598941.1| transcriptional regulator [Neisseria meningitidis 053442]
 gi|304387853|ref|ZP_07370027.1| cold shock transcription regulator protein [Neisseria
          meningitidis ATCC 13091]
 gi|161595326|gb|ABX72986.1| transcriptional regulator [Neisseria meningitidis 053442]
 gi|304338118|gb|EFM04254.1| cold shock transcription regulator protein [Neisseria
          meningitidis ATCC 13091]
 gi|325129992|gb|EGC52787.1| putative transcriptional regulator [Neisseria meningitidis
          OX99.30304]
 gi|325132021|gb|EGC54719.1| putative transcriptional regulator [Neisseria meningitidis M6190]
 gi|325134026|gb|EGC56681.1| putative transcriptional regulator [Neisseria meningitidis
          M13399]
 gi|325135947|gb|EGC58557.1| putative transcriptional regulator [Neisseria meningitidis M0579]
 gi|325137775|gb|EGC60350.1| putative transcriptional regulator [Neisseria meningitidis
          ES14902]
 gi|325140014|gb|EGC62543.1| putative transcriptional regulator [Neisseria meningitidis CU385]
 gi|325142116|gb|EGC64542.1| putative transcriptional regulator [Neisseria meningitidis
          961-5945]
 gi|325144132|gb|EGC66439.1| putative transcriptional regulator [Neisseria meningitidis
          M01-240013]
 gi|325198041|gb|ADY93497.1| putative transcriptional regulator [Neisseria meningitidis G2136]
 gi|325200482|gb|ADY95937.1| putative transcriptional regulator [Neisseria meningitidis
          H44/76]
 gi|325202374|gb|ADY97828.1| putative transcriptional regulator [Neisseria meningitidis
          M01-240149]
 gi|325203909|gb|ADY99362.1| putative transcriptional regulator [Neisseria meningitidis
          M01-240355]
 gi|325206328|gb|ADZ01781.1| putative transcriptional regulator [Neisseria meningitidis
          M04-240196]
 gi|325207874|gb|ADZ03326.1| putative transcriptional regulator [Neisseria meningitidis
          NZ-05/33]
          Length = 80

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D V   
Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFD-VTTG 68

Query: 61 ANGKYSA 67
            GK +A
Sbjct: 69 PKGKQAA 75


>gi|256751272|ref|ZP_05492152.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          ethanolicus CCSD1]
 gi|289578721|ref|YP_003477348.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          italicus Ab9]
 gi|297544955|ref|YP_003677257.1| cold-shock DNA-binding domain-containing protein
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|307266235|ref|ZP_07547777.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|326390559|ref|ZP_08212115.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          ethanolicus JW 200]
 gi|256749827|gb|EEU62851.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          ethanolicus CCSD1]
 gi|289528434|gb|ADD02786.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          italicus Ab9]
 gi|296842730|gb|ADH61246.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|306918765|gb|EFN48997.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|325993384|gb|EGD51820.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          ethanolicus JW 200]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          RG +KW+N +KGYGFI      E G DVF+H SA+   G   L EGQ V ++ V+
Sbjct: 3  RGKVKWFNAEKGYGFI----EREDGTDVFVHYSAIEGDGFKTLEEGQKVEFEVVE 53


>gi|297201608|ref|ZP_06919005.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|197711021|gb|EDY55055.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|311897871|dbj|BAJ30279.1| putative cold shock protein [Kitasatospora setae KM-6054]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G DVF+H SA+ ++G  +L E Q V++D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQAVSFDVTQGPKGPQ 60

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 61 --AENVTPV 67


>gi|160947736|ref|ZP_02094903.1| hypothetical protein PEPMIC_01671 [Parvimonas micra ATCC 33270]
 gi|158446870|gb|EDP23865.1| hypothetical protein PEPMIC_01671 [Parvimonas micra ATCC 33270]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDAN 62
          +G++KW+N  KG+GFI    STE G+DVF+H SA+   G F  L EGQ V ++ V+  A 
Sbjct: 2  KGTVKWFNAAKGFGFI----STEDGEDVFVHYSALEETGEFRTLDEGQAVEFEIVEG-AK 56

Query: 63 GKYSAENLKL 72
          G  ++  +KL
Sbjct: 57 GPQASGVVKL 66


>gi|149185568|ref|ZP_01863884.1| Cold shock protein [Erythrobacter sp. SD-21]
 gi|148830788|gb|EDL49223.1| Cold shock protein [Erythrobacter sp. SD-21]
          Length = 70

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G++K++N DKGYGFI P +GS +S    F+H SAV +AG+  L + Q + Y+ V+ 
Sbjct: 1  MAKTGTVKFFNSDKGYGFIQPDDGSADS----FVHISAVQAAGMQTLDKEQRLNYE-VEQ 55

Query: 60 DANGKYSAENL 70
            NGK SA N+
Sbjct: 56 GRNGKESAVNI 66


>gi|114049935|emb|CAK50952.1| putative cold shock protein [Streptomyces ambofaciens]
 gi|114050157|emb|CAK51190.1| putative cold shock protein [Streptomyces ambofaciens]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDGG---GADVFAHYSNIAAQGFRELLEGQKVTFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|294648554|ref|ZP_06726022.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194]
 gi|292825556|gb|EFF84291.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194]
          Length = 71

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          V +G++KW+N  KG+GFI      ESG DVF H S +AS+G   L EGQ V +   Q
Sbjct: 6  VVKGTVKWFNETKGFGFI----QQESGPDVFAHFSEIASSGFKTLMEGQQVEFSVAQ 58


>gi|85709247|ref|ZP_01040312.1| Cold shock protein [Erythrobacter sp. NAP1]
 gi|85687957|gb|EAQ27961.1| Cold shock protein [Erythrobacter sp. NAP1]
          Length = 71

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+K++N DKGYGFI P+  +    D F+H SAV +AG+  L + Q + Y+ V+   NGK
Sbjct: 6  GSVKFFNADKGYGFIQPDDGSA---DSFVHISAVQAAGMQTLDKEQRLNYE-VETGRNGK 61

Query: 65 YSAENL 70
           SA NL
Sbjct: 62 ESAVNL 67


>gi|308274453|emb|CBX31052.1| Cold shock-like protein cspLA [uncultured Desulfobacterium sp.]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G+DVF+H SA+ S G  +L+EG  VT+D V N   G 
Sbjct: 4  GTVKWFNDRKGFGFI----EQENGNDVFVHHSAINSNGFKSLSEGDRVTFDVV-NGPKGP 58

Query: 65 YSAENLKL 72
           +A   KL
Sbjct: 59 GAANVTKL 66


>gi|237807342|ref|YP_002891782.1| cold-shock DNA-binding domain-containing protein [Tolumonas
          auensis DSM 9187]
 gi|237499603|gb|ACQ92196.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM
          9187]
          Length = 69

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          GS+KW+N  KG+GF++ +     G DVF+H SA+AS G   L EGQ V++D
Sbjct: 6  GSVKWFNETKGFGFLSQD---NGGKDVFVHFSAIASTGFKTLAEGQAVSFD 53


>gi|300790362|ref|YP_003770653.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
 gi|299799876|gb|ADJ50251.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
          Length = 68

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI    STE G DVF+H SA+ S G   L EG  V ++ VQ+  +G+
Sbjct: 4  GTVKWFNSEKGYGFIE---STE-GPDVFVHYSAIQSEGFRTLDEGDRVEFE-VQSGRDGR 58

Query: 65 YSAENLKLV 73
            A +++ V
Sbjct: 59 SQAADVRKV 67


>gi|52079383|ref|YP_078174.1| major cold-shock protein [Bacillus licheniformis ATCC 14580]
 gi|52784743|ref|YP_090572.1| CspB [Bacillus licheniformis ATCC 14580]
 gi|154685371|ref|YP_001420532.1| CspB [Bacillus amyloliquefaciens FZB42]
 gi|308172897|ref|YP_003919602.1| major cold-shock protein [Bacillus amyloliquefaciens DSM 7]
 gi|319646836|ref|ZP_08001065.1| cold shock protein cspB [Bacillus sp. BT1B_CT2]
 gi|52002594|gb|AAU22536.1| major cold-shock protein [Bacillus licheniformis ATCC 14580]
 gi|52347245|gb|AAU39879.1| CspB [Bacillus licheniformis ATCC 14580]
 gi|154351222|gb|ABS73301.1| CspB [Bacillus amyloliquefaciens FZB42]
 gi|307605761|emb|CBI42132.1| major cold-shock protein [Bacillus amyloliquefaciens DSM 7]
 gi|317391424|gb|EFV72222.1| cold shock protein cspB [Bacillus sp. BT1B_CT2]
 gi|328552537|gb|AEB23029.1| major cold-shock protein [Bacillus amyloliquefaciens TA208]
 gi|328910937|gb|AEB62533.1| major cold-shock protein [Bacillus amyloliquefaciens LL3]
          Length = 66

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 3  EGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQSVSFEIVEGN 55


>gi|295798071|emb|CAX68890.1| Cold-shock protein DNA-binding domain [uncultured bacterium]
          Length = 73

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          ++ +G +KW+N  KGYGF+ P+G  E G DVF+H SA+   G   LT GQ V ++ V
Sbjct: 5  VLTKGKVKWFNNQKGYGFVNPDG--EEGRDVFVHYSAIQGDGYKTLTTGQDVEFELV 59


>gi|229084702|ref|ZP_04216967.1| Cold shock-like protein cspB [Bacillus cereus Rock3-44]
 gi|228698586|gb|EEL51306.1| Cold shock-like protein cspB [Bacillus cereus Rock3-44]
          Length = 65

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG+    DDVF+H SA+   G   L EGQ V++D V+ +  G
Sbjct: 2  QGKVKWFNNEKGFGFIEIEGA----DDVFVHFSAIQGDGYKALEEGQEVSFDIVEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|166711808|ref|ZP_02243015.1| major cold shock protein [Xanthomonas oryzae pv. oryzicola
          BLS256]
          Length = 69

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ  
Sbjct: 7  GIVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQ 58


>gi|92113792|ref|YP_573720.1| cold-shock DNA-binding protein family protein [Chromohalobacter
          salexigens DSM 3043]
 gi|91796882|gb|ABE59021.1| cold-shock DNA-binding protein family [Chromohalobacter
          salexigens DSM 3043]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+PE   + GDD+F H S + + G  +L +GQ V++D  Q
Sbjct: 4  GTVKWFNDAKGFGFISPE---DGGDDLFAHFSEIQAEGFKSLQDGQKVSFDVTQ 54


>gi|188586832|ref|YP_001918377.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179351519|gb|ACB85789.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 65

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N D+GYGFI  +G    GDDVF+H SA+   G   L +GQ V ++ V+    G
Sbjct: 2  QGKVKWFNADRGYGFIERDG----GDDVFVHYSAIQEEGFKTLEDGQDVEFEIVEG-PRG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|167037174|ref|YP_001664752.1| cold-shock DNA-binding domain-containing protein
          [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040687|ref|YP_001663672.1| cold-shock DNA-binding domain-containing protein
          [Thermoanaerobacter sp. X514]
 gi|300914728|ref|ZP_07132044.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp.
          X561]
 gi|307724038|ref|YP_003903789.1| cold-shock DNA-binding domain-containing protein
          [Thermoanaerobacter sp. X513]
 gi|320115592|ref|YP_004185751.1| Cold-shock protein DNA-binding protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
 gi|166854927|gb|ABY93336.1| putative cold-shock DNA-binding domain protein
          [Thermoanaerobacter sp. X514]
 gi|166856008|gb|ABY94416.1| putative cold-shock DNA-binding domain protein
          [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300889663|gb|EFK84809.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp.
          X561]
 gi|307581099|gb|ADN54498.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp.
          X513]
 gi|319928683|gb|ADV79368.1| Cold-shock protein DNA-binding protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          RG +KW+N +KGYGFI      E G DVF+H SA+   G   L EGQ V ++ V+
Sbjct: 3  RGKVKWFNAEKGYGFI----EREDGTDVFVHYSAIEGDGFKTLEEGQKVEFEVVE 53


>gi|319939553|ref|ZP_08013913.1| cold shock protein [Streptococcus anginosus 1_2_62CV]
 gi|319811539|gb|EFW07834.1| cold shock protein [Streptococcus anginosus 1_2_62CV]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI    S E+G DVF H SA+ S G  +L EG+ VT+D
Sbjct: 3  QGTVKWFNAEKGFGFI----SQENGPDVFAHFSAIQSDGFKSLNEGEKVTFD 50


>gi|222053850|ref|YP_002536212.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
 gi|221563139|gb|ACM19111.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
          Length = 67

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N  KG+GFI    S ++G+DVF+H SA++  G   L EG  VT+D V+
Sbjct: 1  MEKGIVKWFNESKGFGFI----SRDTGEDVFVHFSAISGEGFKTLNEGDAVTFDVVK 53


>gi|294101358|ref|YP_003553216.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
 gi|293616338|gb|ADE56492.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
          Length = 66

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N  KGYGFIT    T+ G DVF+H SA+   G   L E Q V++D  Q +
Sbjct: 3  QGTVKWFNDSKGYGFIT----TDEGKDVFVHYSAIMGDGFKTLAENQRVSFDVTQGE 55


>gi|325981354|ref|YP_004293756.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
          sp. AL212]
 gi|325530873|gb|ADZ25594.1| cold-shock DNA-binding domain protein [Nitrosomonas sp. AL212]
          Length = 67

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+  +E   D+F H SA+  +G   L EGQ V++D  Q
Sbjct: 4  GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMSGFKTLKEGQKVSFDVTQ 54


>gi|148265690|ref|YP_001232396.1| cold-shock DNA-binding domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146399190|gb|ABQ27823.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
          Rf4]
          Length = 66

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI      E+G+DVF+H S++   G  +L EGQ VT+D VQ
Sbjct: 4  GVVKWFNDSKGFGFI----EQENGEDVFVHFSSIQGDGFKSLAEGQAVTFDIVQ 53


>gi|15924392|ref|NP_371926.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|15926982|ref|NP_374515.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus N315]
 gi|21283019|ref|NP_646107.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus MW2]
 gi|49483592|ref|YP_040816.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486243|ref|YP_043464.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651902|ref|YP_186289.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus COL]
 gi|82750994|ref|YP_416735.1| cold shock protein [Staphylococcus aureus RF122]
 gi|87161577|ref|YP_493992.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|88195129|ref|YP_499930.1| cold shock protein [Staphylococcus aureus subsp. aureus NCTC
          8325]
 gi|148267890|ref|YP_001246833.1| cold-shock DNA-binding domain-containing protein [Staphylococcus
          aureus subsp. aureus JH9]
 gi|150393953|ref|YP_001316628.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus JH1]
 gi|151221525|ref|YP_001332347.1| major cold-shock protein CspA [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|156979721|ref|YP_001441980.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          Mu3]
 gi|161509568|ref|YP_001575227.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|221140629|ref|ZP_03565122.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus str.
          JKD6009]
 gi|253315273|ref|ZP_04838486.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus str. CF-Marseille]
 gi|253732039|ref|ZP_04866204.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253733351|ref|ZP_04867516.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|255006191|ref|ZP_05144792.2| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus Mu50-omega]
 gi|257425466|ref|ZP_05601891.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 55/2053]
 gi|257428126|ref|ZP_05604524.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus 65-1322]
 gi|257430757|ref|ZP_05607139.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
          68-397]
 gi|257433517|ref|ZP_05609875.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
          E1410]
 gi|257436358|ref|ZP_05612405.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus M876]
 gi|257795543|ref|ZP_05644522.1| major cold shock protein CspA [Staphylococcus aureus A9781]
 gi|258413351|ref|ZP_05681627.1| major cold shock protein CspA [Staphylococcus aureus A9763]
 gi|258420542|ref|ZP_05683484.1| major cold shock protein CspA [Staphylococcus aureus A9719]
 gi|258423666|ref|ZP_05686554.1| CSD family cold shock protein [Staphylococcus aureus A9635]
 gi|258434686|ref|ZP_05688760.1| major cold-shock protein CspA [Staphylococcus aureus A9299]
 gi|258444738|ref|ZP_05693067.1| major cold shock protein [Staphylococcus aureus A8115]
 gi|258447427|ref|ZP_05695571.1| major cold shock protein CspA [Staphylococcus aureus A6300]
 gi|258449268|ref|ZP_05697371.1| major cold shock protein CspA [Staphylococcus aureus A6224]
 gi|258452191|ref|ZP_05700206.1| cold shock protein cspA [Staphylococcus aureus A5948]
 gi|258454648|ref|ZP_05702612.1| major cold shock protein CspA [Staphylococcus aureus A5937]
 gi|262050357|ref|ZP_06023200.1| major cold shock protein CspA [Staphylococcus aureus D30]
 gi|269203025|ref|YP_003282294.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus ED98]
 gi|282892895|ref|ZP_06301130.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A8117]
 gi|282903982|ref|ZP_06311870.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          C160]
 gi|282905747|ref|ZP_06313602.1| cold shock protein beta-ribbon CspA family protein
          [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908718|ref|ZP_06316536.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282910982|ref|ZP_06318784.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282914190|ref|ZP_06321977.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M899]
 gi|282916668|ref|ZP_06324426.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus
          D139]
 gi|282919112|ref|ZP_06326847.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
          C427]
 gi|282924295|ref|ZP_06331969.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus C101]
 gi|282927926|ref|ZP_06335535.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A10102]
 gi|282929069|ref|ZP_06336651.1| cold shock protein cspA [Staphylococcus aureus A9765]
 gi|283770473|ref|ZP_06343365.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus
          aureus subsp. aureus H19]
 gi|283958164|ref|ZP_06375615.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|284024402|ref|ZP_06378800.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus 132]
 gi|293501217|ref|ZP_06667068.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus 58-424]
 gi|293510178|ref|ZP_06668886.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus M809]
 gi|293526770|ref|ZP_06671455.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M1015]
 gi|294850737|ref|ZP_06791456.1| cold shock protein [Staphylococcus aureus A9754]
 gi|295406349|ref|ZP_06816156.1| cold shock protein [Staphylococcus aureus A8819]
 gi|295427915|ref|ZP_06820547.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275262|ref|ZP_06857769.1| stationary phase/starvation inducible regulatory protein CspD
          [Staphylococcus aureus subsp. aureus MR1]
 gi|297207943|ref|ZP_06924375.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|297244578|ref|ZP_06928461.1| cold shock protein CspB [Staphylococcus aureus A8796]
 gi|297591124|ref|ZP_06949762.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8]
 gi|300912027|ref|ZP_07129470.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|304381021|ref|ZP_07363676.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|81827857|sp|Q6G9F9|CSPA_STAAS RecName: Full=Cold shock protein CspA
 gi|81828019|sp|Q6GH06|CSPA_STAAR RecName: Full=Cold shock protein CspA
 gi|81832398|sp|Q7A0X3|CSPA_STAAW RecName: Full=Cold shock protein CspA
 gi|81832432|sp|Q7A2R8|CSPA_STAAM RecName: Full=Cold shock protein CspA
 gi|81832507|sp|Q7A5P3|CSPA_STAAN RecName: Full=Cold shock protein CspA
 gi|81859588|sp|Q5HG18|CSPA_STAAC RecName: Full=Cold shock protein CspA
 gi|118572254|sp|Q2FH36|CSPA_STAA3 RecName: Full=Cold shock protein CspA
 gi|118572255|sp|Q2FYN2|CSPA_STAA8 RecName: Full=Cold shock protein CspA
 gi|118572256|sp|Q2YY16|CSPA_STAAB RecName: Full=Cold shock protein CspA
 gi|8101860|gb|AAF72664.1|AF259960_1 major cold shock protein CspA [Staphylococcus aureus]
 gi|13701199|dbj|BAB42494.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus N315]
 gi|14247173|dbj|BAB57564.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|21204458|dbj|BAB95155.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus MW2]
 gi|49241721|emb|CAG40411.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244686|emb|CAG43119.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57286088|gb|AAW38182.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
          aureus COL]
 gi|82656525|emb|CAI80947.1| cold shock protein [Staphylococcus aureus RF122]
 gi|87127551|gb|ABD22065.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|87202687|gb|ABD30497.1| cold shock protein, putative [Staphylococcus aureus subsp. aureus
          NCTC 8325]
 gi|147740959|gb|ABQ49257.1| cold-shock DNA-binding protein family [Staphylococcus aureus
          subsp. aureus JH9]
 gi|149946405|gb|ABR52341.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus JH1]
 gi|150374325|dbj|BAF67585.1| major cold-shock protein CspA [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|156721856|dbj|BAF78273.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          Mu3]
 gi|160368377|gb|ABX29348.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|253724230|gb|EES92959.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253728703|gb|EES97432.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|257271923|gb|EEV04061.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 55/2053]
 gi|257274967|gb|EEV06454.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus 65-1322]
 gi|257278885|gb|EEV09504.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
          68-397]
 gi|257281610|gb|EEV11747.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
          E1410]
 gi|257284640|gb|EEV14760.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus M876]
 gi|257789515|gb|EEV27855.1| major cold shock protein CspA [Staphylococcus aureus A9781]
 gi|257839915|gb|EEV64383.1| major cold shock protein CspA [Staphylococcus aureus A9763]
 gi|257843490|gb|EEV67897.1| major cold shock protein CspA [Staphylococcus aureus A9719]
 gi|257846164|gb|EEV70190.1| CSD family cold shock protein [Staphylococcus aureus A9635]
 gi|257849047|gb|EEV73029.1| major cold-shock protein CspA [Staphylococcus aureus A9299]
 gi|257850231|gb|EEV74184.1| major cold shock protein [Staphylococcus aureus A8115]
 gi|257853618|gb|EEV76577.1| major cold shock protein CspA [Staphylococcus aureus A6300]
 gi|257857256|gb|EEV80154.1| major cold shock protein CspA [Staphylococcus aureus A6224]
 gi|257860128|gb|EEV82961.1| cold shock protein cspA [Staphylococcus aureus A5948]
 gi|257863031|gb|EEV85795.1| major cold shock protein CspA [Staphylococcus aureus A5937]
 gi|259161556|gb|EEW46155.1| major cold shock protein CspA [Staphylococcus aureus D30]
 gi|262075315|gb|ACY11288.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus ED98]
 gi|269940897|emb|CBI49280.1| cold shock protein [Staphylococcus aureus subsp. aureus TW20]
 gi|282313682|gb|EFB44075.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus C101]
 gi|282316922|gb|EFB47296.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
          C427]
 gi|282319155|gb|EFB49507.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus
          D139]
 gi|282322258|gb|EFB52582.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M899]
 gi|282324677|gb|EFB54987.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282326982|gb|EFB57277.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282331039|gb|EFB60553.1| cold shock protein beta-ribbon CspA family protein
          [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590223|gb|EFB95303.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A10102]
 gi|282591856|gb|EFB96900.1| cold shock protein cspA [Staphylococcus aureus A9765]
 gi|282595600|gb|EFC00564.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          C160]
 gi|282764892|gb|EFC05017.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A8117]
 gi|283460620|gb|EFC07710.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus
          aureus subsp. aureus H19]
 gi|283470617|emb|CAQ49828.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
          aureus ST398]
 gi|283790313|gb|EFC29130.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|285817080|gb|ADC37567.1| Cold shock protein CspA [Staphylococcus aureus 04-02981]
 gi|290920842|gb|EFD97905.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M1015]
 gi|291096222|gb|EFE26483.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus 58-424]
 gi|291467122|gb|EFF09640.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus M809]
 gi|294822413|gb|EFG38863.1| cold shock protein [Staphylococcus aureus A9754]
 gi|294968937|gb|EFG44959.1| cold shock protein [Staphylococcus aureus A8819]
 gi|295128273|gb|EFG57907.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887411|gb|EFH26312.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|297178608|gb|EFH37854.1| cold shock protein CspB [Staphylococcus aureus A8796]
 gi|297576010|gb|EFH94726.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8]
 gi|298694697|gb|ADI97919.1| cold shock protein [Staphylococcus aureus subsp. aureus ED133]
 gi|300886273|gb|EFK81475.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|302333015|gb|ADL23208.1| putative cold-shock DNA-binding domain protein [Staphylococcus
          aureus subsp. aureus JKD6159]
 gi|302751231|gb|ADL65408.1| putative cold-shock DNA-binding domain protein [Staphylococcus
          aureus subsp. aureus str. JKD6008]
 gi|304340437|gb|EFM06376.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|312438198|gb|ADQ77269.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          TCH60]
 gi|312829797|emb|CBX34639.1| cold shock protein cspD [Staphylococcus aureus subsp. aureus
          ECT-R 2]
 gi|315131210|gb|EFT87194.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          CGS03]
 gi|315195294|gb|EFU25681.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          CGS00]
 gi|315195914|gb|EFU26279.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          CGS01]
 gi|320140790|gb|EFW32639.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus MRSA131]
 gi|320142182|gb|EFW34000.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus MRSA177]
 gi|323438687|gb|EGA96429.1| cold shock protein [Staphylococcus aureus O11]
 gi|323444056|gb|EGB01667.1| cold shock protein [Staphylococcus aureus O46]
 gi|329314078|gb|AEB88491.1| Cold shock protein cspA [Staphylococcus aureus subsp. aureus
          T0131]
 gi|329725310|gb|EGG61794.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 21189]
 gi|329733434|gb|EGG69766.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 21193]
          Length = 66

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQAVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|319651116|ref|ZP_08005249.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
 gi|317397170|gb|EFV77875.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
          Length = 66

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFI  EG    G+DVF+H SA+ + G   L EGQ V +D  Q
Sbjct: 4  GKVKWFNSEKGFGFIEVEG----GEDVFVHYSAIQTEGFKTLDEGQEVNFDIEQ 53


>gi|291326350|ref|ZP_06124178.2| conserved domain protein [Providencia rettgeri DSM 1131]
 gi|291314673|gb|EFE55126.1| conserved domain protein [Providencia rettgeri DSM 1131]
          Length = 66

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFITP    +   DVF+H SA+ S    +L EGQ V++  ++N A G 
Sbjct: 3  GTVKWFNDDKGFGFITP---ADGSKDVFVHFSAIQSDNFKSLAEGQQVSF-TIENGAKGP 58

Query: 65 YSA 67
           +A
Sbjct: 59 AAA 61


>gi|149179855|ref|ZP_01858360.1| cold shock protein [Bacillus sp. SG-1]
 gi|148852047|gb|EDL66192.1| cold shock protein [Bacillus sp. SG-1]
          Length = 66

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ + 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAITGEGFKSLDEGQRVEFEVVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|134095543|ref|YP_001100618.1| cold shock DNA -binding domain-containing protein [Herminiimonas
          arsenicoxydans]
 gi|133739446|emb|CAL62496.1| Cold shock protein CspD [Herminiimonas arsenicoxydans]
          Length = 67

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H SA+   G   L EGQ V+++  Q   
Sbjct: 1  MQTGTVKWFNDSKGFGFITPD---SGGEDLFAHFSAITMEGFKTLKEGQKVSFEVTQG-P 56

Query: 62 NGKYSAENLK 71
           GK  A N+K
Sbjct: 57 KGK-QASNIK 65


>gi|330447207|ref|ZP_08310857.1| cold shock protein CspG [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328491398|dbj|GAA05354.1| cold shock protein CspG [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 70

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GF+T       G DVF+H  A+AS G   LTEGQ V++D  Q
Sbjct: 7  GLVKWFNEEKGFGFLTQ---NNGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQ 57


>gi|253990644|ref|YP_003042000.1| cold shock protein CspE [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253782094|emb|CAQ85258.1| cold shock-like protein cspe [Photorhabdus asymbiotica]
          Length = 79

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++
Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQKVEFE 63


>gi|297580078|ref|ZP_06942005.1| cold-shock DNA-binding domain-containing protein [Vibrio cholerae
          RC385]
 gi|297535724|gb|EFH74558.1| cold-shock DNA-binding domain-containing protein [Vibrio cholerae
          RC385]
          Length = 70

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N +KG+GFITP+     G DVF+H +++AS G+  L EGQ V +   Q
Sbjct: 7  GSVKWFNENKGFGFITPD---IGGSDVFVHFNSIASGGVKTLFEGQKVNFSIEQ 57


>gi|266621457|ref|ZP_06114392.1| cold shock protein B [Clostridium hathewayi DSM 13479]
 gi|288866898|gb|EFC99196.1| cold shock protein B [Clostridium hathewayi DSM 13479]
          Length = 67

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 3/59 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ G++KW+N  KGYGFIT +   E+G++VF+H S + + G   L EGQ VTYD  + +
Sbjct: 1  MNNGTVKWFNGAKGYGFITND---ETGEEVFVHFSGIMADGYKTLEEGQKVTYDTTEGN 56


>gi|85860691|ref|YP_462893.1| cold shock protein [Syntrophus aciditrophicus SB]
 gi|85723782|gb|ABC78725.1| cold shock protein [Syntrophus aciditrophicus SB]
          Length = 66

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  +G    G DVF+H SA+ + G  +L+EG  V++D V      
Sbjct: 3  EGTVKWFNDSKGFGFIEQDG----GKDVFVHHSAIQAEGFKSLSEGDRVSFDVVVGKKG- 57

Query: 64 KYSAENLKLV 73
            SAEN++ V
Sbjct: 58 -PSAENVRKV 66


>gi|229135998|ref|ZP_04264758.1| hypothetical protein bcere0014_48750 [Bacillus cereus BDRD-ST196]
 gi|228647456|gb|EEL03531.1| hypothetical protein bcere0014_48750 [Bacillus cereus BDRD-ST196]
          Length = 65

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E GDDVF+H SA+   G  +L EGQ V +D V + A G
Sbjct: 2  QGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 57 PQADNVVKL 65


>gi|254477809|ref|ZP_05091195.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp.
          R11]
 gi|214032052|gb|EEB72887.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp.
          R11]
          Length = 68

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PEG    G DVF+H S V  +GL  L + Q V ++ ++   +G+
Sbjct: 4  GTVKWFNTTKGYGFIEPEG---GGKDVFVHISQVERSGLTGLADNQKVEFEMIEG-RDGR 59

Query: 65 YSAENLK 71
            A  ++
Sbjct: 60 QMASEIR 66


>gi|84624223|ref|YP_451595.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|84368163|dbj|BAE69321.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF
          311018]
          Length = 69

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GIVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQ 56


>gi|302391175|ref|YP_003826995.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
 gi|302203252|gb|ADL11930.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
          Length = 67

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G++KW++  KGYGFI     +E G+DVF+H SA+   G   L +GQ V ++ V+ D
Sbjct: 1  MILSGTVKWFDTKKGYGFI----ESEEGEDVFVHYSAIDEDGFKTLEDGQEVEFEIVEGD 56

Query: 61 ANGKYSAENL 70
             +  AEN+
Sbjct: 57 KGPQ--AENV 64


>gi|228990713|ref|ZP_04150678.1| Cold shock-like protein cspB [Bacillus pseudomycoides DSM 12442]
 gi|228996815|ref|ZP_04156449.1| Cold shock-like protein cspB [Bacillus mycoides Rock3-17]
 gi|229004492|ref|ZP_04162232.1| Cold shock-like protein cspB [Bacillus mycoides Rock1-4]
 gi|228756753|gb|EEM06058.1| Cold shock-like protein cspB [Bacillus mycoides Rock1-4]
 gi|228762876|gb|EEM11789.1| Cold shock-like protein cspB [Bacillus mycoides Rock3-17]
 gi|228769239|gb|EEM17837.1| Cold shock-like protein cspB [Bacillus pseudomycoides DSM 12442]
          Length = 65

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG+    DDVF+H +A+   G   L EGQ V++D V+ +  G
Sbjct: 2  QGKVKWFNNEKGFGFIEIEGA----DDVFVHFTAIQGEGYKALEEGQEVSFDIVEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|327440173|dbj|BAK16538.1| cold shock protein [Solibacillus silvestris StLB046]
          Length = 66

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V ++ V  D 
Sbjct: 1  MKQGTVKWFNSEKGFGFIELEGE----DDVFVHFSAIQGEGFKTLEEGQKVEFEVV--DG 54

Query: 62 NGKYSAENL 70
          N    A N+
Sbjct: 55 NRGPQASNV 63


>gi|224105199|ref|XP_002313723.1| predicted protein [Populus trichocarpa]
 gi|222850131|gb|EEE87678.1| predicted protein [Populus trichocarpa]
          Length = 66

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 46/66 (69%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFITP+   + GDD+F+H+S++ S G  +L +G+ V ++ ++N  +G+
Sbjct: 1  GKVKWFSDQKGFGFITPD---DGGDDLFVHQSSIKSEGYRSLGDGEEVEFE-IENSDDGR 56

Query: 65 YSAENL 70
            A N+
Sbjct: 57 TKAANV 62


>gi|92112688|ref|YP_572616.1| cold-shock DNA-binding protein family protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91795778|gb|ABE57917.1| cold-shock DNA-binding protein family [Chromohalobacter salexigens
           DSM 3043]
          Length = 155

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +KW+N +KGYGFIT     +SG+DVF+H  A+   G   L EGQ V Y  V+N+
Sbjct: 92  GEVKWFNVNKGYGFIT----RDSGEDVFVHFRAIRGKGHRTLAEGQKVRYHVVENE 143


>gi|116335083|ref|YP_802578.1| cold shock protein [Candidatus Carsonella ruddii PV]
 gi|116235364|dbj|BAF35212.1| cold shock protein [Candidatus Carsonella ruddii PV]
          Length = 67

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI+P+   + GDD+F+H S +   G  +L +GQ V++D  Q      
Sbjct: 4  GTVKWFNDTKGFGFISPD---DGGDDLFVHFSEIRVDGFKSLQDGQRVSFDVTQGKKG-- 58

Query: 65 YSAENLKLV 73
            A N+K++
Sbjct: 59 LQASNVKVI 67


>gi|58582344|ref|YP_201360.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426938|gb|AAW75975.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 121

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G +KW+N  KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 59  GIVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQ 108


>gi|294811207|ref|ZP_06769850.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|294323806|gb|EFG05449.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064]
          Length = 92

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ +G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q  
Sbjct: 25 VMAQGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELREGQRVSFDVTQGQ 81

Query: 61 ANGKYSAENL 70
             +  AEN+
Sbjct: 82 KGPQ--AENI 89


>gi|285017895|ref|YP_003375606.1| cold-shock protein [Xanthomonas albilineans GPE PC73]
 gi|283473113|emb|CBA15619.1| probable cold-shock protein [Xanthomonas albilineans]
          Length = 81

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KG+GFITPE  T+   D+F+H  A+   G  +L EGQ V++  VQ
Sbjct: 15 QGTVKWFNDAKGFGFITPEAGTDL-SDLFVHFRAIQGTGFKSLQEGQKVSFVAVQ 68


>gi|239978906|ref|ZP_04701430.1| cold shock protein [Streptomyces albus J1074]
 gi|291450789|ref|ZP_06590179.1| cold shock protein [Streptomyces albus J1074]
 gi|291353738|gb|EFE80640.1| cold shock protein [Streptomyces albus J1074]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A  G   L EGQ VT+D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDGG---GPDVFAHYSNIAGRGFRELLEGQKVTFDVTQGQKG-- 58

Query: 65 YSAENL 70
            AEN+
Sbjct: 59 LQAENI 64


>gi|229100140|ref|ZP_04231042.1| hypothetical protein bcere0020_53410 [Bacillus cereus Rock3-29]
 gi|229106964|ref|ZP_04237064.1| hypothetical protein bcere0019_56300 [Bacillus cereus Rock3-28]
 gi|229176343|ref|ZP_04303799.1| hypothetical protein bcere0006_53830 [Bacillus cereus MM3]
 gi|228607130|gb|EEK64496.1| hypothetical protein bcere0006_53830 [Bacillus cereus MM3]
 gi|228676519|gb|EEL31265.1| hypothetical protein bcere0019_56300 [Bacillus cereus Rock3-28]
 gi|228683275|gb|EEL37251.1| hypothetical protein bcere0020_53410 [Bacillus cereus Rock3-29]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N DKG+GFI  +G    G+DVF+H SA+   G  +L EGQ VT++  Q
Sbjct: 1  MEQGKVKWFNADKGFGFIERQG----GEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQ 53


>gi|116494613|ref|YP_806347.1| cold shock protein [Lactobacillus casei ATCC 334]
 gi|191638050|ref|YP_001987216.1| Similar to cold shock protein, CspA family [Lactobacillus casei
          BL23]
 gi|239631790|ref|ZP_04674821.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
          subsp. paracasei 8700:2]
 gi|301066162|ref|YP_003788185.1| cold shock protein [Lactobacillus casei str. Zhang]
 gi|116104763|gb|ABJ69905.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC
          334]
 gi|190712352|emb|CAQ66358.1| Similar to cold shock protein, CspA family [Lactobacillus casei
          BL23]
 gi|239526255|gb|EEQ65256.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
          subsp. paracasei 8700:2]
 gi|300438569|gb|ADK18335.1| Cold shock protein [Lactobacillus casei str. Zhang]
 gi|327382135|gb|AEA53611.1| Cold-shock domain family protein [Lactobacillus casei LC2W]
 gi|327385278|gb|AEA56752.1| Cold-shock domain family protein [Lactobacillus casei BD-II]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N +KGYGFIT     E G DVF+H SA+   G   L EGQ VT++   +D
Sbjct: 1  MEHGTVKWFNAEKGYGFIT----REDGSDVFVHFSAIQGDGYKTLEEGQAVTFEVEDSD 55


>gi|34499122|ref|NP_903337.1| cold shock transcription regulator protein [Chromobacterium
          violaceum ATCC 12472]
 gi|34104973|gb|AAQ61329.1| cold shock transcription regulator protein [Chromobacterium
          violaceum ATCC 12472]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 3/53 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++ V
Sbjct: 4  GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEVV 53


>gi|116619951|ref|YP_822107.1| cold-shock DNA-binding protein family protein [Candidatus
          Solibacter usitatus Ellin6076]
 gi|116223113|gb|ABJ81822.1| cold-shock DNA-binding protein family [Candidatus Solibacter
          usitatus Ellin6076]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  KGYGFI   G    GDDVF+H SA+ + G  +L EG  V ++  Q  
Sbjct: 1  MKEKGTVKWFNAAKGYGFIQRSG----GDDVFVHFSAIQANGYRSLDEGAEVEFEVKQGP 56

Query: 61 ANGKYSAENLKLV 73
                AEN+ LV
Sbjct: 57 KG--LQAENVALV 67


>gi|168015213|ref|XP_001760145.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688525|gb|EDQ74901.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 187

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   + GDD+F+H++++ + G  +L EG++V +  V++  +G+
Sbjct: 16 GKVKWFNSSKGFGFITPD---KGGDDLFVHQTSIHAEGFRSLREGEVVEFQ-VESSEDGR 71

Query: 65 YSA 67
            A
Sbjct: 72 TKA 74


>gi|13475110|ref|NP_106674.1| cold-shock protein [Mesorhizobium loti MAFF303099]
 gi|14025861|dbj|BAB52460.1| cold-shock protein [Mesorhizobium loti MAFF303099]
          Length = 68

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          M   G++KWYNP KG+GFI PE   +   D+F+H +A+  +GL  L EGQ V
Sbjct: 1  MESEGTVKWYNPQKGFGFIAPENGEK---DIFVHATALTRSGLSMLMEGQKV 49


>gi|319787350|ref|YP_004146825.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317465862|gb|ADV27594.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 69

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI    S E+G+DVF+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFNDAKGFGFI----SRENGEDVFVHFRAIQMQGFKSLKEGQKVTFTVVQ 56


>gi|289665681|ref|ZP_06487262.1| major cold shock protein [Xanthomonas campestris pv. vasculorum
          NCPPB702]
 gi|289671305|ref|ZP_06492380.1| major cold shock protein [Xanthomonas campestris pv. musacearum
          NCPPB4381]
          Length = 69

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GIVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQ 56


>gi|51473848|ref|YP_067605.1| cold shock protein CspA [Rickettsia typhi str. Wilmington]
 gi|81826291|sp|Q68W69|CSPA_RICTY RecName: Full=Cold shock-like protein CspA
 gi|51460160|gb|AAU04123.1| cold shock protein CspA [Rickettsia typhi str. Wilmington]
          Length = 70

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  +     G DVF+H+SA+ +AGL +L E Q V +D    +  GK
Sbjct: 7  GKVKWYNSTKNFGFIEQDNG---GKDVFVHKSAIEAAGLHSLKERQEVIFDI--EEKQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAINLRV 69


>gi|319892401|ref|YP_004149276.1| Cold shock protein CspA [Staphylococcus pseudintermedius
          HKU10-03]
 gi|317162097|gb|ADV05640.1| Cold shock protein CspA [Staphylococcus pseudintermedius
          HKU10-03]
 gi|323464494|gb|ADX76647.1| cold shock protein [Staphylococcus pseudintermedius ED99]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLDEGQSVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|308068467|ref|YP_003870072.1| Cold shock-like protein cspD [Paenibacillus polymyxa E681]
 gi|305857746|gb|ADM69534.1| Cold shock-like protein cspD [Paenibacillus polymyxa E681]
          Length = 65

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI  +G    G+DVF+H SA+   G   L EGQ V ++  + +  G
Sbjct: 2  KGTVKWFNAEKGYGFIQMDG----GEDVFVHFSAIQGDGFKTLEEGQAVEFEITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|302879451|ref|YP_003848015.1| cold-shock DNA-binding domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302582240|gb|ADL56251.1| cold-shock DNA-binding domain protein [Gallionella
          capsiferriformans ES-2]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+  +E   D+F H SA+  +G  +L EGQ V++D V+
Sbjct: 4  GTVKWFNDAKGFGFITPDDGSE---DLFAHFSAINMSGFKSLKEGQKVSFDVVK 54


>gi|229823989|ref|ZP_04450058.1| hypothetical protein GCWU000282_01293 [Catonella morbi ATCC
          51271]
 gi|229786343|gb|EEP22457.1| hypothetical protein GCWU000282_01293 [Catonella morbi ATCC
          51271]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI      E+G+DVF+H SA+   G   L EGQ+V ++ V+  A
Sbjct: 1  MEQGKVKWFNSEKGFGFI----ERENGNDVFVHFSAILGEGYKTLEEGQVVNFE-VEEGA 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAANVEKL 66


>gi|297565513|ref|YP_003684485.1| cold-shock DNA-binding domain-containing protein [Meiothermus
          silvanus DSM 9946]
 gi|296849962|gb|ADH62977.1| cold-shock DNA-binding domain protein [Meiothermus silvanus DSM
          9946]
          Length = 68

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 5/60 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI    + E G DVF+H SA+ + G   L EGQ V ++ V+   NGK
Sbjct: 4  GTVKWFNAEKGYGFI----AQEDGPDVFVHYSAIETDGFRTLQEGQRVQFE-VEPGKNGK 58


>gi|170726448|ref|YP_001760474.1| cold-shock DNA-binding domain-containing protein [Shewanella
          woodyi ATCC 51908]
 gi|169811795|gb|ACA86379.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
          51908]
          Length = 68

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 4/53 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55
          +G++KW+N DKGYGFITPE   + G D+F+H S + S G +  L +GQ V +D
Sbjct: 3  KGTVKWFNADKGYGFITPE---DGGKDLFVHHSEIRSGGGYATLNDGQSVEFD 52


>gi|168185844|ref|ZP_02620479.1| conserved domain protein [Clostridium botulinum C str. Eklund]
 gi|253681085|ref|ZP_04861888.1| conserved domain protein [Clostridium botulinum D str. 1873]
 gi|331270523|ref|YP_004397015.1| major cold shock protein [Clostridium botulinum BKT015925]
 gi|169296006|gb|EDS78139.1| conserved domain protein [Clostridium botulinum C str. Eklund]
 gi|253562934|gb|EES92380.1| conserved domain protein [Clostridium botulinum D str. 1873]
 gi|329127073|gb|AEB77018.1| major cold shock protein [Clostridium botulinum BKT015925]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI+ EG     DDVF+H SA+   G   L EGQ V ++ V   A G 
Sbjct: 4  GIVKWFNAEKGFGFISVEGE----DDVFVHFSAIQGDGFKTLEEGQKVEFE-VTEGARGP 58

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 59 QAANVVKL 66


>gi|148234211|ref|NP_001091131.1| hypothetical protein LOC100036881 [Xenopus laevis]
 gi|120538253|gb|AAI29585.1| LOC100036881 protein [Xenopus laevis]
          Length = 131

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+ KW+N +KGYGF+TP+   +   D+F+H+S + + G  +L EG+ V +  + ++ +GK
Sbjct: 6  GTCKWFNAEKGYGFLTPD---DGSPDIFVHQSTIHADGFRSLAEGEPVEFSVITDERSGK 62

Query: 65 YSAENL 70
            A ++
Sbjct: 63 LKAADV 68


>gi|91785349|ref|YP_560555.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|187925500|ref|YP_001897142.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|209516559|ref|ZP_03265413.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|296159494|ref|ZP_06842318.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|307731142|ref|YP_003908366.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1003]
 gi|323527488|ref|YP_004229641.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1001]
 gi|91689303|gb|ABE32503.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
 gi|187716694|gb|ACD17918.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|209503000|gb|EEA03002.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295890202|gb|EFG69996.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|307585677|gb|ADN59075.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
 gi|323384490|gb|ADX56581.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+G    G+D+F H S + + G   L E Q VT++ V+   
Sbjct: 1  METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRTEGFKTLQENQKVTFE-VKTGP 56

Query: 62 NGKYSAENLKLV 73
           GK +A N+K V
Sbjct: 57 KGKQAA-NIKPV 67


>gi|330890523|gb|EGH23184.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          mori str. 301020]
          Length = 70

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW++ +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 7  GTVKWFSDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56


>gi|297159497|gb|ADI09209.1| putative cold shock protein [Streptomyces bingchenggensis BCW-1]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q VT+D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINASGFRSLEENQAVTFDVTQ 54


>gi|320009867|gb|ADW04717.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G DVF H S +A+ G   L EGQ V +D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIEQEG---GGADVFAHYSNIAAQGFRELQEGQKVNFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|302553359|ref|ZP_07305701.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
 gi|302559146|ref|ZP_07311488.1| cold shock transcription regulator protein [Streptomyces
          griseoflavus Tu4000]
 gi|302470977|gb|EFL34070.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
 gi|302476764|gb|EFL39857.1| cold shock transcription regulator protein [Streptomyces
          griseoflavus Tu4000]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G DVF+H SA+ ++G  +L E Q V++D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQQVSFDVTQGPKGPQ 60

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 61 --AENVTPV 67


>gi|90419403|ref|ZP_01227313.1| possible cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336340|gb|EAS50081.1| possible cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 210

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 2/54 (3%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KWYN DKG+GFI  +    +G DVF+H +A+  +GL  L +GQ VT  +VQ
Sbjct: 146 GTVKWYNADKGFGFIGLDDG--AGKDVFVHATALNRSGLTTLADGQKVTVRFVQ 197


>gi|311895414|dbj|BAJ27822.1| putative cold shock protein [Kitasatospora setae KM-6054]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI  +G    G DVF H S + S G   L EGQ V +D  Q     +
Sbjct: 4  GTVKWFNSEKGYGFIEQDG---GGADVFAHYSNIQSTGFRELIEGQKVEFDVTQGQKGPQ 60

Query: 65 YSAENLKLV 73
            AEN++ +
Sbjct: 61 --AENIRPI 67


>gi|311030382|ref|ZP_07708472.1| cold shock protein [Bacillus sp. m3-13]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    GDDVF+H SA+   G  +L EG+ V+++ V+ +
Sbjct: 1  MQNGKVKWFNNEKGFGFIEVEG----GDDVFVHFSAITGDGFKSLEEGEEVSFEVVEGN 55


>gi|226228145|ref|YP_002762251.1| cold shock protein [Gemmatimonas aurantiaca T-27]
 gi|226091336|dbj|BAH39781.1| cold shock protein [Gemmatimonas aurantiaca T-27]
          Length = 70

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M   G +KW+N  KG+GFITP+  ++   D F+H SA+   G   L EG+ V +D VQ
Sbjct: 1  MRTTGKVKWFNDAKGFGFITPDDGSK---DCFVHHSAIQGGGFRTLAEGERVEFDIVQ 55


>gi|312200423|ref|YP_004020484.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
 gi|311231759|gb|ADP84614.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 7/71 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI+ +G    G DVF+H SA+ + G  +L EGQ V ++ VQ    G
Sbjct: 3  QGAVKWFNAEKGFGFISVDG---GGPDVFVHFSAIVADGYKSLDEGQTVQFEIVQ----G 55

Query: 64 KYSAENLKLVP 74
          +   +  K++P
Sbjct: 56 QKGPQAEKVMP 66


>gi|299537233|ref|ZP_07050536.1| major cold shock protein [Lysinibacillus fusiformis ZC1]
 gi|298727474|gb|EFI68046.1| major cold shock protein [Lysinibacillus fusiformis ZC1]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  EG    G+DVF+H SA+ S G   L EGQ V +  V+  + G
Sbjct: 3  QGTVKWFNAEKGFGFIAVEG----GNDVFVHFSAIQSDGFKTLEEGQKVEFG-VEEGSRG 57

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 58 PQATNVVKL 66


>gi|257866254|ref|ZP_05645907.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC30]
 gi|257873232|ref|ZP_05652885.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC10]
 gi|257800212|gb|EEV29240.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC30]
 gi|257807396|gb|EEV36218.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC10]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N +KGYGF+    S E G D+F+H S++   G  NL EGQ V Y   +N+
Sbjct: 1  MQNGTVKWFNSEKGYGFV----SGEDGQDIFVHFSSIVGEGYRNLEEGQSVVYKIGENE 55


>gi|225872220|ref|YP_002753675.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
 gi|225791808|gb|ACO31898.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 48/72 (66%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GF++ +G    G+DVF+H +A+ + G  +L EGQ V +D V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFLSRQG----GEDVFVHYTAIKTNGFRSLQEGQAVQFDVVKGPK 56

Query: 62 NGKYSAENLKLV 73
             + A+N++++
Sbjct: 57 G--WQADNVQVL 66


>gi|315658306|ref|ZP_07911178.1| cold shock protein CspA [Staphylococcus lugdunensis M23590]
 gi|315496635|gb|EFU84958.1| cold shock protein CspA [Staphylococcus lugdunensis M23590]
          Length = 76

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D
Sbjct: 10 VMKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQSVEFEVVEGD 65

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 66 -RGPQAANVVKL 76


>gi|227509605|ref|ZP_03939654.1| CspA family cold shock transcriptional regulator [Lactobacillus
          brevis subsp. gravesensis ATCC 27305]
 gi|227512551|ref|ZP_03942600.1| CspA family cold shock transcriptional regulator [Lactobacillus
          buchneri ATCC 11577]
 gi|227522777|ref|ZP_03952826.1| CspA family cold shock transcriptional regulator [Lactobacillus
          hilgardii ATCC 8290]
 gi|227084235|gb|EEI19547.1| CspA family cold shock transcriptional regulator [Lactobacillus
          buchneri ATCC 11577]
 gi|227090041|gb|EEI25353.1| CspA family cold shock transcriptional regulator [Lactobacillus
          hilgardii ATCC 8290]
 gi|227190967|gb|EEI71034.1| CspA family cold shock transcriptional regulator [Lactobacillus
          brevis subsp. gravesensis ATCC 27305]
          Length = 79

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 5/60 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ +G++KW+N DKGYGFIT    T+ G DVF+H SA+   G  +L EGQ VT D   +D
Sbjct: 12 IMKQGTVKWFNADKGYGFIT----TDDG-DVFVHFSAINKDGFKSLDEGQHVTLDVEDSD 66


>gi|27467496|ref|NP_764133.1| cold-shock protein C [Staphylococcus epidermidis ATCC 12228]
 gi|57866355|ref|YP_188058.1| CSD family cold shock protein [Staphylococcus epidermidis RP62A]
 gi|242242178|ref|ZP_04796623.1| cold-shock protein [Staphylococcus epidermidis W23144]
 gi|251810255|ref|ZP_04824728.1| cold-shock protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875621|ref|ZP_06284492.1| cold-shock DNA-binding domain protein [Staphylococcus epidermidis
          SK135]
 gi|293368262|ref|ZP_06614891.1| cold-shock protein [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315039|gb|AAO04175.1|AE016745_274 cold-shock protein C [Staphylococcus epidermidis ATCC 12228]
 gi|57637013|gb|AAW53801.1| cold shock protein, CSD family [Staphylococcus epidermidis RP62A]
 gi|242234351|gb|EES36663.1| cold-shock protein [Staphylococcus epidermidis W23144]
 gi|251806307|gb|EES58964.1| cold-shock protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295648|gb|EFA88171.1| cold-shock DNA-binding domain protein [Staphylococcus epidermidis
          SK135]
 gi|291317685|gb|EFE58102.1| cold-shock protein [Staphylococcus epidermidis M23864:W2(grey)]
 gi|319401831|gb|EFV90039.1| cold shock protein cspC [Staphylococcus epidermidis FRI909]
 gi|329723353|gb|EGG59883.1| major cold shock protein CspA [Staphylococcus epidermidis VCU144]
 gi|329736857|gb|EGG73122.1| major cold shock protein CspA [Staphylococcus epidermidis VCU028]
 gi|329737950|gb|EGG74174.1| major cold shock protein CspA [Staphylococcus epidermidis VCU045]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI      E+G DVF+H SA+   G  +L EGQ V +D V+ + 
Sbjct: 1  MNNGTVKWFNAEKGFGFI----ERENGGDVFVHFSAIVEDGYKSLEEGQSVEFDIVEGE- 55

Query: 62 NGKYSAENLKL 72
           G+ +A  +K+
Sbjct: 56 RGEQAANVVKM 66


>gi|330466858|ref|YP_004404601.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
 gi|328809829|gb|AEB44001.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N DKG+GFIT +G    G DVF+H SA+ S+G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQSSGYRTLEENQRVEFEIAQ 54


>gi|313896973|ref|ZP_07830520.1| 7.4 kDa cold shock protein [Selenomonas sp. oral taxon 137 str.
          F0430]
 gi|320530494|ref|ZP_08031552.1| cold-shock DNA-binding domain protein [Selenomonas artemidis
          F0399]
 gi|312974420|gb|EFR39888.1| 7.4 kDa cold shock protein [Selenomonas sp. oral taxon 137 str.
          F0430]
 gi|320137327|gb|EFW29251.1| cold-shock DNA-binding domain protein [Selenomonas artemidis
          F0399]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++ DKGYGFI    S + GDDVF+H S++   G   L+EGQ V +D V+
Sbjct: 3  GKVKWFSADKGYGFI----SRDDGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVE 52


>gi|313671996|ref|YP_004050107.1| cold-shock DNA-binding domain protein [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312938752|gb|ADR17944.1| cold-shock DNA-binding domain protein [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M + G++KW+N  KGYGFIT    + +G+DVF+H SA+   G  +L EG  V +D V+
Sbjct: 1  MSNTGTVKWFNDTKGYGFIT----STTGEDVFVHYSAITMGGFKSLKEGDRVKFDIVK 54


>gi|326792190|ref|YP_004310011.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
 gi|326542954|gb|ADZ84813.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
          Length = 65

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI    + E GDDVF+H SA+   G   L EGQ V ++  Q   N  
Sbjct: 3  GTVKWFNAEKGFGFI----AREDGDDVFVHFSAIQGDGYKTLEEGQKVNFEITQ--GNRG 56

Query: 65 YSAENL 70
            AEN+
Sbjct: 57 AQAENV 62


>gi|94991342|ref|YP_599442.1| cold shock protein [Streptococcus pyogenes MGAS10270]
 gi|94544850|gb|ABF34898.1| Cold shock protein [Streptococcus pyogenes MGAS10270]
          Length = 69

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI    S E+G DVF H SA+ + G   L EGQ V +D
Sbjct: 5  QGTVKWFNAEKGFGFI----SAENGQDVFAHFSAIQTNGFKTLEEGQKVAFD 52


>gi|119718488|ref|YP_925453.1| cold-shock DNA-binding protein family protein [Nocardioides sp.
          JS614]
 gi|119539149|gb|ABL83766.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  E   + GDDVF+H SA+ + G  +L E Q V +D  Q     
Sbjct: 3  QGTVKWFNAEKGFGFIAQE---DGGDDVFVHYSAIQTQGYKSLDENQKVEFDVTQGPKGP 59

Query: 64 KYSAENLKLV 73
          +  AEN++ +
Sbjct: 60 Q--AENVRPI 67


>gi|260768242|ref|ZP_05877176.1| cold shock protein [Vibrio furnissii CIP 102972]
 gi|260616272|gb|EEX41457.1| cold shock protein [Vibrio furnissii CIP 102972]
 gi|315179943|gb|ADT86857.1| Cold shock protein [Vibrio furnissii NCTC 11218]
          Length = 70

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N  KG+GFIT +     G+DVF+H +++ S G   L EGQ V++D  Q
Sbjct: 7  GSVKWFNETKGFGFITQD---NGGNDVFVHFASIVSEGFKTLAEGQRVSFDVEQ 57


>gi|308270407|emb|CBX27019.1| Major cold shock protein [uncultured Desulfobacterium sp.]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW++  KGYGFI      E+G+DVF+H SA+  AG   L+EG+ VT+D  Q +
Sbjct: 4  GIVKWFSNKKGYGFI----EQENGEDVFVHHSAINGAGFKTLSEGEKVTFDIEQGE 55


>gi|145588771|ref|YP_001155368.1| cold-shock DNA-binding domain-containing protein
          [Polynucleobacter necessarius subsp. asymbioticus
          QLW-P1DMWA-1]
 gi|145047177|gb|ABP33804.1| cold-shock DNA-binding protein family [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFITPE     G+D+F H SA+ S G  +L EGQ VT+D
Sbjct: 4  GIVKWFNDAKGFGFITPE---LGGEDLFAHFSAINSNGFKSLAEGQKVTFD 51


>gi|52080703|ref|YP_079494.1| cold-shock protein [Bacillus licheniformis ATCC 14580]
 gi|52786076|ref|YP_091905.1| CspD [Bacillus licheniformis ATCC 14580]
 gi|154686439|ref|YP_001421600.1| CspD [Bacillus amyloliquefaciens FZB42]
 gi|296329499|ref|ZP_06871986.1| CspD [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674824|ref|YP_003866496.1| RNA-helicase co-factor [Bacillus subtilis subsp. spizizenii str.
          W23]
 gi|308173984|ref|YP_003920689.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus amyloliquefaciens DSM 7]
 gi|311068704|ref|YP_003973627.1| RNA-helicase co-factor [Bacillus atrophaeus 1942]
 gi|319645338|ref|ZP_07999571.1| cold shock protein cspD [Bacillus sp. BT1B_CT2]
 gi|52003914|gb|AAU23856.1| cold-shock protein [Bacillus licheniformis ATCC 14580]
 gi|52348578|gb|AAU41212.1| CspD [Bacillus licheniformis ATCC 14580]
 gi|154352290|gb|ABS74369.1| CspD [Bacillus amyloliquefaciens FZB42]
 gi|296153381|gb|EFG94243.1| CspD [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413068|gb|ADM38187.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus subtilis subsp. spizizenii str. W23]
 gi|307606848|emb|CBI43219.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus amyloliquefaciens DSM 7]
 gi|310869221|gb|ADP32696.1| RNA-helicase co-factor [Bacillus atrophaeus 1942]
 gi|317393147|gb|EFV73941.1| cold shock protein cspD [Bacillus sp. BT1B_CT2]
 gi|328553088|gb|AEB23580.1| RNA-helicase co-factor [Bacillus amyloliquefaciens TA208]
 gi|328912139|gb|AEB63735.1| Cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus amyloliquefaciens LL3]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    GDDVF+H +A+   G  +L EGQ V+++ V+ +
Sbjct: 1  MQNGKVKWFNNEKGFGFIEVEG----GDDVFVHFTAIEGEGYKSLEEGQEVSFEIVEGN 55


>gi|225873881|ref|YP_002755340.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
 gi|225792075|gb|ACO32165.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 41/57 (71%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KG+GFI    S ++G+DVF+H SA++S G  +L EGQ V ++ V+
Sbjct: 1  MEQGTVKWFNDAKGFGFI----SRQNGEDVFVHYSAISSNGFRSLQEGQAVQFNVVK 53


>gi|82703364|ref|YP_412930.1| cold-shock DNA-binding domain-containing protein [Nitrosospira
          multiformis ATCC 25196]
 gi|82411429|gb|ABB75538.1| cold-shock DNA-binding protein family [Nitrosospira multiformis
          ATCC 25196]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+  +E   D+F H SA+  +G   L EGQ VT++  Q
Sbjct: 4  GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMSGFKTLKEGQKVTFEVTQ 54


>gi|300173985|ref|YP_003773151.1| cold shock protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299888364|emb|CBL92332.1| Cold shock protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KGYGF+T     E+G+DVF H SA+   G   L EGQ V ++   +D
Sbjct: 1  MEKGTVKWFNGEKGYGFVTR----ENGEDVFAHFSAIQGDGFKTLEEGQAVEFEVETSD 55


>gi|152977400|ref|YP_001376917.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152026152|gb|ABS23922.1| putative cold-shock DNA-binding domain protein [Bacillus
          cytotoxicus NVH 391-98]
          Length = 65

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E GDD+F+H SA+   G   L EGQ V +D V + A G
Sbjct: 2  QGRVKWFNAEKGFGFI----EREDGDDIFVHFSAIQQEGYKTLEEGQNVEFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 57 PQAVNVVKL 65


>gi|229825450|ref|ZP_04451519.1| hypothetical protein GCWU000182_00809 [Abiotrophia defectiva ATCC
          49176]
 gi|229790013|gb|EEP26127.1| hypothetical protein GCWU000182_00809 [Abiotrophia defectiva ATCC
          49176]
          Length = 71

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G +KW+N +KGYGFIT +     GDDVF+H SA+   G   L EGQ VT++
Sbjct: 1  MNTGVVKWFNSEKGYGFITND---NGGDDVFVHFSAINVEGFKTLNEGQKVTFE 51


>gi|254382460|ref|ZP_04997819.1| cold shock protein [Streptomyces sp. Mg1]
 gi|194341364|gb|EDX22330.1| cold shock protein [Streptomyces sp. Mg1]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E QLV +D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINASGFRSLEENQLVNFDVTQ 54


>gi|300697692|ref|YP_003748353.1| Cold shock protein, DNA-binding (cspX ) [Ralstonia solanacearum
           CFBP2957]
 gi|299074416|emb|CBJ53966.1| Cold shock protein, DNA-binding (cspX ) [Ralstonia solanacearum
           CFBP2957]
          Length = 128

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 3/58 (5%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           ++  G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++  Q
Sbjct: 61  IMATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQ 115


>gi|304320970|ref|YP_003854613.1| Cold shock protein [Parvularcula bermudensis HTCC2503]
 gi|303299872|gb|ADM09471.1| Cold shock protein [Parvularcula bermudensis HTCC2503]
          Length = 69

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFI PE   +   DVF+H +A+  +GL  L EG  VT++  ++  +GK
Sbjct: 4  GTVKFFNTQKGFGFIQPE---DGSSDVFVHATALERSGLAPLNEGDKVTFETARDKRSGK 60

Query: 65 YSAENLKL 72
           +   +++
Sbjct: 61 MAVSTIQM 68


>gi|323141266|ref|ZP_08076162.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT
          12067]
 gi|322414223|gb|EFY05046.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT
          12067]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N +KGYGFI  EG    G D+F+H S + S G   L EG  V +D +Q D
Sbjct: 3  GKVKWFNAEKGYGFIQREG----GKDLFVHFSGIKSEGFKTLEEGWNVEFDVIQGD 54


>gi|294633722|ref|ZP_06712280.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292830364|gb|EFF88715.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G DVF H S +A+ G   L EGQ V +D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQEG---GGADVFAHYSNIAAQGFRELLEGQKVNFDVAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|194292705|ref|YP_002008612.1| cold shock protein, transcription antiterminator [Cupriavidus
          taiwanensis LMG 19424]
 gi|193226609|emb|CAQ72560.1| cold shock protein, transcription antiterminator [Cupriavidus
          taiwanensis LMG 19424]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G++KW+N  KG+GFITP+   E G+D+F H SA+  +G  +L EGQ V Y
Sbjct: 1  METGTVKWFNDAKGFGFITPD---EGGNDLFAHFSAIEGSGFKSLKEGQKVRY 50


>gi|116749630|ref|YP_846317.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116698694|gb|ABK17882.1| cold-shock DNA-binding protein family [Syntrophobacter
          fumaroxidans MPOB]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KGYGFI     T SG DVF+H S++   G   L+EGQ VT++ ++  A G 
Sbjct: 4  GRVKWFNDQKGYGFI----ETGSGPDVFVHHSSIEGVGFKTLSEGQEVTFE-IEKGAKGP 58

Query: 65 YSAENLKL 72
           +    KL
Sbjct: 59 QAVRVKKL 66


>gi|309388475|gb|ADO76355.1| cold-shock DNA-binding protein family [Halanaerobium praevalens
          DSM 2228]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M++ G++KW++  KGYGFI      E GDDVF+H SA+   G   L + Q V ++ V+ D
Sbjct: 1  MIYTGTVKWFDAKKGYGFI----EREDGDDVFVHFSAIEDEGFKTLEDEQEVEFEIVEGD 56

Query: 61 ANGKYSAENL 70
             +  AEN+
Sbjct: 57 RGPQ--AENV 64


>gi|218898929|ref|YP_002447340.1| hypothetical protein BCG9842_B1369 [Bacillus cereus G9842]
 gi|218545380|gb|ACK97774.1| conserved domain protein [Bacillus cereus G9842]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N +KG+GFI  EG    G+DVF+H SA+   G  +L EGQ VT++  Q
Sbjct: 1  MEQGKVKWFNAEKGFGFIEREG----GEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQ 53


>gi|29827434|ref|NP_822068.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29604533|dbj|BAC68603.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +AS+G   L EGQ V +D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIASSGFRELQEGQKVNFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|323483950|ref|ZP_08089323.1| hypothetical protein HMPREF9474_01072 [Clostridium symbiosum
          WAL-14163]
 gi|323693454|ref|ZP_08107665.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14673]
 gi|323402666|gb|EGA94991.1| hypothetical protein HMPREF9474_01072 [Clostridium symbiosum
          WAL-14163]
 gi|323502509|gb|EGB18360.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14673]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +++G++KW+N  KG+GFI  E    +G+D+F+H S +A  G  +L +GQ VTYD  Q +
Sbjct: 1  MNKGTVKWFNSQKGFGFICGE----NGEDIFVHFSGLAMDGYKSLEDGQEVTYDIAQGN 55


>gi|302671806|ref|YP_003831766.1| cold shock domain protein CspD1 [Butyrivibrio proteoclasticus
          B316]
 gi|302396279|gb|ADL35184.1| cold shock domain protein CspD1 [Butyrivibrio proteoclasticus
          B316]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +++G++KW+N  KGYGFI    S E+G+DVF+H S +   G  +L EG  V YD +Q +
Sbjct: 1  MNKGTVKWFNNQKGYGFI----SDEAGNDVFVHYSGLNMEGFKSLEEGASVEYDVIQGE 55


>gi|296134263|ref|YP_003641510.1| cold-shock DNA-binding domain protein [Thermincola sp. JR]
 gi|296032841|gb|ADG83609.1| cold-shock DNA-binding domain protein [Thermincola potens JR]
          Length = 65

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI      E G DVF+H SA+   G   L EGQ V ++ V+  A G 
Sbjct: 3  GKVKWFNQEKGFGFI----EREDGGDVFVHFSAIQEEGFKTLAEGQEVEFEIVEG-ARGP 57

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 58 QAANVVKL 65


>gi|296111480|ref|YP_003621862.1| cold-shock domain family protein [Leuconostoc kimchii IMSNU
          11154]
 gi|295833012|gb|ADG40893.1| cold-shock domain family protein [Leuconostoc kimchii IMSNU
          11154]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KGYGF+T     E+G+DVF H SA+   G   L EGQ V ++   +D
Sbjct: 1  MEKGTVKWFNGEKGYGFVTR----ENGEDVFAHFSAIQGDGFKTLEEGQAVEFEVETSD 55


>gi|182434255|ref|YP_001821974.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|239946053|ref|ZP_04697990.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|239992524|ref|ZP_04713188.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
 gi|291449502|ref|ZP_06588892.1| cold shock protein scoF [Streptomyces roseosporus NRRL 15998]
 gi|326774768|ref|ZP_08234033.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178462771|dbj|BAG17291.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|291352449|gb|EFE79353.1| cold shock protein scoF [Streptomyces roseosporus NRRL 15998]
 gi|326655101|gb|EGE39947.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S + S G   L EGQ VT+D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIAQDGG---GPDVFAHYSNINSTGFRELQEGQAVTFDITQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|169349912|ref|ZP_02866850.1| hypothetical protein CLOSPI_00651 [Clostridium spiroforme DSM
          1552]
 gi|169293480|gb|EDS75613.1| hypothetical protein CLOSPI_00651 [Clostridium spiroforme DSM
          1552]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N +KG+GFIT +   E G D+F+H SA+ + G   L EGQ+V ++  + D
Sbjct: 4  GKVKWFNQEKGFGFITND---EDGKDIFVHFSAINAEGFKTLEEGQIVEFEINETD 56


>gi|242074456|ref|XP_002447164.1| hypothetical protein SORBIDRAFT_06g029650 [Sorghum bicolor]
 gi|241938347|gb|EES11492.1| hypothetical protein SORBIDRAFT_06g029650 [Sorghum bicolor]
          Length = 215

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N DKG+GFITP+ ++E   D+F+H+S++   G  +L EG+ V Y
Sbjct: 8  GTVKWFNVDKGFGFITPDDASE---DLFVHQSSIKCDGYRSLKEGEAVEY 54


>gi|297586963|ref|ZP_06945608.1| cold shock protein CspA [Finegoldia magna ATCC 53516]
 gi|297574944|gb|EFH93663.1| cold shock protein CspA [Finegoldia magna ATCC 53516]
          Length = 81

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KG+GFIT E +     D+F+H+SA+   G   L EGQ V+YD V+  
Sbjct: 15 IMSNGTVKWFNSTKGFGFITGEDNK----DIFVHQSAIQQEGFRTLEEGQKVSYD-VEAS 69

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 70 EKGDRAVNVVKL 81


>gi|163749964|ref|ZP_02157208.1| putative Cold shock-like protein [Shewanella benthica KT99]
 gi|161330238|gb|EDQ01219.1| putative Cold shock-like protein [Shewanella benthica KT99]
          Length = 70

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N DKG+GF+T +     G DVF+H  A+AS G   L EGQ V+++  Q +
Sbjct: 7  GTVKWFNEDKGFGFLTQD---NGGADVFVHFRAIASEGFKTLDEGQKVSFEVEQGE 59


>gi|149242121|pdb|2I5M|X Chain X, Crystal Structure Of Bacillus Subtilis Cold Shock
          Protein Cspb Variant A46k S48r
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V ++ V+ +
Sbjct: 3  EGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQKVRFEIVEGN 55


>gi|331005216|ref|ZP_08328609.1| Cold shock protein CspC [gamma proteobacterium IMCC1989]
 gi|330420959|gb|EGG95232.1| Cold shock protein CspC [gamma proteobacterium IMCC1989]
          Length = 68

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      ESG DVF H SA+  +G   LTEGQ V +   Q     +
Sbjct: 6  GTVKWFNESKGFGFI----EQESGPDVFAHFSAIQGSGFKTLTEGQKVEFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 62 --AENINPV 68


>gi|314935260|ref|ZP_07842613.1| conserved domain protein [Staphylococcus hominis subsp. hominis
          C80]
 gi|313656595|gb|EFS20334.1| conserved domain protein [Staphylococcus hominis subsp. hominis
          C80]
          Length = 75

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 8/73 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI      E GDDVF+H S +A+ G   L EGQ V +D  +   
Sbjct: 10 MNNGTVKWFNAEKGFGFI----EREDGDDVFVHFSGIATDGYKTLEEGQKVEFDITE--- 62

Query: 62 NGKYSAENLKLVP 74
           G+   +   +VP
Sbjct: 63 -GQRGEQATNVVP 74


>gi|13472380|ref|NP_103947.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|260467122|ref|ZP_05813301.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|14023126|dbj|BAB49733.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
 gi|259029134|gb|EEW30431.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
          Length = 70

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N  KG+GFITP+   +   DVF+H SAV ++GL  L +GQ VT+D  + D
Sbjct: 1  MPQTGTVKFFNHAKGFGFITPD---DGAKDVFVHISAVQASGLPGLEDGQKVTFD-TEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KRGK 60


>gi|317126004|ref|YP_004100116.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
 gi|315590092|gb|ADU49389.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G++KW+N +KG+GFI  +G    G DVF+H SA+ S G   L EGQ V +D  Q 
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GADVFVHYSAIESGGYRELQEGQKVEFDVTQG 55


>gi|290968845|ref|ZP_06560382.1| cold-shock DNA-binding domain protein [Megasphaera genomosp.
          type_1 str. 28L]
 gi|290781141|gb|EFD93732.1| cold-shock DNA-binding domain protein [Megasphaera genomosp.
          type_1 str. 28L]
          Length = 65

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KGYGFI  +G    G DVF+H SA+   G  +L EGQ V +D VQ  A G 
Sbjct: 3  GKVKWFSAEKGYGFIEKDG----GGDVFVHFSAIQEDGFKSLAEGQEVEFD-VQEGARGP 57

Query: 65 YSAENLK 71
           +A  +K
Sbjct: 58 QAANVVK 64


>gi|238919761|ref|YP_002933276.1| hypothetical protein NT01EI_1865 [Edwardsiella ictaluri 93-146]
 gi|238869330|gb|ACR69041.1| conserved domain protein [Edwardsiella ictaluri 93-146]
          Length = 69

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP    +   DVF+H SA+ S G   L EGQ V +  +Q+   G 
Sbjct: 6  GQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSDGFKTLAEGQQVEFS-IQDSPRGP 61

Query: 65 YSAENLKL 72
           +A+ + L
Sbjct: 62 AAADVIAL 69


>gi|83647927|ref|YP_436362.1| cold shock protein [Hahella chejuensis KCTC 2396]
 gi|83635970|gb|ABC31937.1| Cold shock protein [Hahella chejuensis KCTC 2396]
          Length = 158

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +KW+NP+KG+GFIT EG    GDD+F+H  ++   G  +L +GQ V +  V+ D
Sbjct: 95  GIVKWFNPNKGFGFITREG----GDDIFVHFRSIRGRGHRSLRQGQKVRFRTVEGD 146


>gi|256822193|ref|YP_003146156.1| cold-shock DNA-binding domain-containing protein [Kangiella
          koreensis DSM 16069]
 gi|256795732|gb|ACV26388.1| cold-shock DNA-binding domain protein [Kangiella koreensis DSM
          16069]
          Length = 69

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI      E+G DVF H SA+AS+G   L EGQ V  ++   D   
Sbjct: 6  KGTVKWFNEAKGFGFI----EQENGPDVFAHFSAIASSGFKTLAEGQQV--EFTLTDGQK 59

Query: 64 KYSAENL 70
             AEN+
Sbjct: 60 GPQAENI 66


>gi|210617492|ref|ZP_03291595.1| hypothetical protein CLONEX_03817 [Clostridium nexile DSM 1787]
 gi|210149279|gb|EEA80288.1| hypothetical protein CLONEX_03817 [Clostridium nexile DSM 1787]
          Length = 68

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW++  KG+GFIT E   +SG D+F+H S +A  G   L EGQ V++D  Q
Sbjct: 1  MNTGTVKWFDSQKGFGFITNE---QSGKDIFVHFSGIALNGFKTLEEGQQVSFDTTQ 54


>gi|170785227|pdb|3CAM|A Chain A, Crystal Structure Of The Cold Shock Domain Protein From
          Neisseria Meningitidis
 gi|170785228|pdb|3CAM|B Chain B, Crystal Structure Of The Cold Shock Domain Protein From
          Neisseria Meningitidis
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D V     GK
Sbjct: 4  GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINXEGFKTLKEGQRVSFD-VTTGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|269792592|ref|YP_003317496.1| cold-shock DNA-binding domain-containing protein
          [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100227|gb|ACZ19214.1| cold-shock DNA-binding domain protein [Thermanaerovibrio
          acidaminovorans DSM 6589]
          Length = 83

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFIT E     G DVF+H SA+   G   L EGQ V+++ V+
Sbjct: 21 GVVKWFNATKGYGFITAE----DGKDVFVHFSAIQQEGFKTLEEGQRVSFEVVE 70


>gi|225075510|ref|ZP_03718709.1| hypothetical protein NEIFLAOT_00523 [Neisseria flavescens
          NRL30031/H210]
 gi|269213456|ref|ZP_05982011.2| cold shock transcription regulator protein [Neisseria cinerea
          ATCC 14685]
 gi|284800098|ref|ZP_05985718.2| cold shock transcription regulator protein [Neisseria subflava
          NJ9703]
 gi|224953145|gb|EEG34354.1| hypothetical protein NEIFLAOT_00523 [Neisseria flavescens
          NRL30031/H210]
 gi|269146157|gb|EEZ72575.1| cold shock transcription regulator protein [Neisseria cinerea
          ATCC 14685]
 gi|284795950|gb|EFC51297.1| cold shock transcription regulator protein [Neisseria subflava
          NJ9703]
          Length = 80

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D V   
Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMDGFKTLKEGQRVSFD-VTTG 68

Query: 61 ANGKYSA 67
            GK +A
Sbjct: 69 PKGKQAA 75


>gi|81428762|ref|YP_395762.1| cold shock protein CspA family protein [Lactobacillus sakei
          subsp. sakei 23K]
 gi|78610404|emb|CAI55454.1| Similar to cold shock protein, CspA family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFIT     E G DVF H SA+   G  +L EGQ V++D V++  
Sbjct: 1  MNNGTVKWFNADKGFGFITG----EDGKDVFAHFSAIQGDGYKSLDEGQAVSFD-VEDSD 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQATNIVKL 66


>gi|115375489|ref|ZP_01462749.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821373|ref|YP_003953731.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1]
 gi|2493774|sp|P72366|CSPA_STIAD RecName: Full=Cold shock-like protein CspA
 gi|1616777|gb|AAB16850.1| cold shock-like protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367532|gb|EAU66507.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394445|gb|ADO71904.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1]
          Length = 68

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFIT +G    G+DVF H SA+   G   L EGQ V ++  +      
Sbjct: 4  GTVKWFNDAKGFGFITQDG---GGEDVFCHHSAINMDGFRTLQEGQKVEFEVTRGPKG-- 58

Query: 65 YSAENLKLVP 74
            A+N++ +P
Sbjct: 59 LQAQNVRSIP 68


>gi|222153624|ref|YP_002562801.1| cold shock protein CspC [Streptococcus uberis 0140J]
 gi|222114437|emb|CAR43247.1| cold shock protein CspC [Streptococcus uberis 0140J]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFIT     E+G DVF H S + S G  +L EGQ V++D  Q
Sbjct: 4  GTVKWFNAEKGFGFITQ----ENGTDVFAHFSEIQSNGFKSLDEGQKVSFDLEQ 53


>gi|70726510|ref|YP_253424.1| major cold shock protein CspA [Staphylococcus haemolyticus
          JCSC1435]
 gi|223043278|ref|ZP_03613325.1| conserved domain protein [Staphylococcus capitis SK14]
 gi|239637089|ref|ZP_04678083.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|289550810|ref|YP_003471714.1| Cold shock protein CspA [Staphylococcus lugdunensis HKU09-01]
 gi|314933579|ref|ZP_07840944.1| conserved domain protein [Staphylococcus caprae C87]
 gi|118572258|sp|Q4L6A7|CSPA_STAHJ RecName: Full=Cold shock protein CspA
 gi|68447234|dbj|BAE04818.1| major cold shock protein CspA [Staphylococcus haemolyticus
          JCSC1435]
 gi|222443489|gb|EEE49587.1| conserved domain protein [Staphylococcus capitis SK14]
 gi|239597439|gb|EEQ79942.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|289180342|gb|ADC87587.1| Cold shock protein CspA [Staphylococcus lugdunensis HKU09-01]
 gi|313653729|gb|EFS17486.1| conserved domain protein [Staphylococcus caprae C87]
 gi|330684708|gb|EGG96406.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQSVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|84497345|ref|ZP_00996167.1| putative cold shock protein [Janibacter sp. HTCC2649]
 gi|84382233|gb|EAP98115.1| putative cold shock protein [Janibacter sp. HTCC2649]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G++KW+N +KG+GFI  +G    G DVF+H SA+ S G   L EGQ V +D  Q 
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GADVFVHYSAIESGGYRELQEGQKVEFDVTQG 55


>gi|115373612|ref|ZP_01460907.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310824928|ref|YP_003957286.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1]
 gi|115369315|gb|EAU68255.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398000|gb|ADO75459.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFIT +G   +G+D+F H SA+ + G  +L EGQ V +D  +      
Sbjct: 4  GTVKWFNDAKGFGFITQDG---AGEDLFCHHSAIQADGFRSLQEGQKVQFDVARGPKG-- 58

Query: 65 YSAENLKLV 73
            A+N++ V
Sbjct: 59 LQAQNVRPV 67


>gi|293376790|ref|ZP_06623011.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
          PC909]
 gi|325838186|ref|ZP_08166522.1| cold shock protein CspB [Turicibacter sp. HGF1]
 gi|292644572|gb|EFF62661.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
          PC909]
 gi|325490857|gb|EGC93158.1| cold shock protein CspB [Turicibacter sp. HGF1]
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N DKGYGFIT     ++GD+VF H S + S G   L EGQ V ++  Q
Sbjct: 4  GTVKWFNADKGYGFIT----VDNGDEVFAHFSEIQSDGFKTLEEGQKVEFEITQ 53


>gi|310639812|ref|YP_003944570.1| cold shock-like protein csplb [Paenibacillus polymyxa SC2]
 gi|309244762|gb|ADO54329.1| Cold shock-like protein cspLB [Paenibacillus polymyxa SC2]
          Length = 66

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF+H SA+   G  +L EGQ V ++ V  + 
Sbjct: 1  MQTGTVKWFNAEKGFGFIEVEG----GSDVFVHFSAIQGEGFKSLDEGQRVEFNVV--EG 54

Query: 62 NGKYSAENL 70
          N    AEN+
Sbjct: 55 NRGPQAENV 63


>gi|300121901|emb|CBK22475.2| Cold-shock protein DNA-binding [Blastocystis hominis]
          Length = 101

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V+ G  KW+N  KGYGFI P+  ++   D+F+H+S++ S+G   L EG+ V +D V +  
Sbjct: 22 VYTGKCKWFNNKKGYGFIIPDPGSDLTTDIFVHQSSIKSSGFRFLKEGESVEFD-VTDGQ 80

Query: 62 NGKYS 66
           GK +
Sbjct: 81 KGKVA 85


>gi|218780300|ref|YP_002431618.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218761684|gb|ACL04150.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 66

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 6/68 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +G    G DVF+H SA+ S+G  +L EG  VT+D ++  A G 
Sbjct: 4  GTVKWFNDQKGFGFIEQDG----GPDVFVHHSAINSSGFRSLNEGDRVTFD-IEQGAKGP 58

Query: 65 YSAENLKL 72
           SA+N+ +
Sbjct: 59 -SAKNVTV 65


>gi|193788570|ref|NP_001123330.1| zinc finger protein ZF(CCHC)-17 [Ciona intestinalis]
 gi|93003148|tpd|FAA00157.1| TPA: zinc finger protein [Ciona intestinalis]
          Length = 193

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G+ KW+N  +GYGFITP+ S++   DVF+H+S++   G  +L EG  V + Y
Sbjct: 29 GNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSIDMEGFRSLQEGDRVKFWY 80


>gi|217969672|ref|YP_002354906.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
 gi|217506999|gb|ACK54010.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+  +E   D+F H SA+  +G  +L EG+ V++D  Q
Sbjct: 4  GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAITMSGFKSLKEGEKVSFDVTQ 54


>gi|182439288|ref|YP_001827007.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|282862092|ref|ZP_06271155.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|302559563|ref|ZP_07311905.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
 gi|326779940|ref|ZP_08239205.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178467804|dbj|BAG22324.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|282563117|gb|EFB68656.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|302477181|gb|EFL40274.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
 gi|320011359|gb|ADW06209.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
 gi|326660273|gb|EGE45119.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ V++D  Q    G+
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GADVFAHYSNIATSGFRELQEGQKVSFDVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 57 KGPQAENIVP 66


>gi|290963038|ref|YP_003494220.1| cold shock protein [Streptomyces scabiei 87.22]
 gi|260652564|emb|CBG75697.1| putative cold shock protein [Streptomyces scabiei 87.22]
          Length = 94

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +++ G   L EGQ V +D  Q      
Sbjct: 31 GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNISAQGFRELLEGQKVNFDIAQGQKGP- 86

Query: 65 YSAENLKLV 73
           +AEN+ LV
Sbjct: 87 -TAENIVLV 94


>gi|284029203|ref|YP_003379134.1| cold-shock DNA-binding domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283808496|gb|ADB30335.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM
          17836]
          Length = 66

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          RG++KW+N DKGYGF+  EG     DDVF+H S + S G   L +GQ V ++ V
Sbjct: 3  RGTVKWFNADKGYGFLAVEGQ----DDVFVHWSKIVSDGYKTLEDGQQVEFEVV 52


>gi|91792287|ref|YP_561938.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217]
 gi|91714289|gb|ABE54215.1| cold-shock DNA-binding protein family [Shewanella denitrificans
          OS217]
          Length = 70

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFITP+     G DVF+H  ++ S G   L EGQ V+++  Q
Sbjct: 7  GLVKWFNEDKGFGFITPD---NGGADVFVHFRSITSEGFKTLAEGQKVSFEVEQ 57


>gi|294636209|ref|ZP_06714624.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
 gi|291090490|gb|EFE23051.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
          Length = 97

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP    +   DVF+H SA+ S G   L EGQ V +  +Q+   G 
Sbjct: 34 GQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSDGFKTLAEGQQVEFS-IQDSPRGP 89

Query: 65 YSAENLKL 72
           +A+ + L
Sbjct: 90 AAADVVAL 97


>gi|167583194|ref|ZP_02376068.1| cold-shock DNA-binding domain protein [Burkholderia thailandensis
          TXDOH]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N +KG+GFITP+G    GDD+F H S +   G   L EGQ V+Y+
Sbjct: 4  GTVKWFNDNKGFGFITPDG---GGDDLFAHFSEIRGDGFKTLAEGQKVSYE 51


>gi|152999996|ref|YP_001365677.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS185]
 gi|160874617|ref|YP_001553933.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS195]
 gi|217974041|ref|YP_002358792.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS223]
 gi|304409581|ref|ZP_07391201.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
 gi|307303939|ref|ZP_07583692.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
 gi|151364614|gb|ABS07614.1| putative cold-shock DNA-binding domain protein [Shewanella
          baltica OS185]
 gi|160860139|gb|ABX48673.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195]
 gi|217499176|gb|ACK47369.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223]
 gi|304352099|gb|EFM16497.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
 gi|306912837|gb|EFN43260.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
 gi|315266858|gb|ADT93711.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678]
          Length = 69

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFI+P+     G D F+H  A+ S G   L EGQ V++D  Q
Sbjct: 6  GVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQ 56


>gi|326439837|ref|ZP_08214571.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q     
Sbjct: 3  QGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELREGQRVSFDVTQGQKGP 59

Query: 64 KYSAENL 70
          +  AEN+
Sbjct: 60 Q--AENI 64


>gi|239929627|ref|ZP_04686580.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291437949|ref|ZP_06577339.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|294630786|ref|ZP_06709346.1| cold shock transcription regulator protein [Streptomyces sp. e14]
 gi|291340844|gb|EFE67800.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|292834119|gb|EFF92468.1| cold shock transcription regulator protein [Streptomyces sp. e14]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q V++D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINATGFRSLEENQQVSFDVTQGPKGPQ 60

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 61 --AENVTPV 67


>gi|207724747|ref|YP_002255144.1| hypothetical transcription regulator protein [Ralstonia
           solanacearum MolK2]
 gi|206589970|emb|CAQ36931.1| hypothetical transcription regulator protein [Ralstonia
           solanacearum MolK2]
          Length = 131

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 3/58 (5%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           ++  G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++  Q
Sbjct: 64  IMATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQ 118


>gi|15676734|ref|NP_273879.1| cold-shock domain-contain protein [Neisseria meningitidis MC58]
 gi|59800853|ref|YP_207565.1| CspA [Neisseria gonorrhoeae FA 1090]
 gi|121634616|ref|YP_974861.1| putative transcriptional regulator [Neisseria meningitidis FAM18]
 gi|194098153|ref|YP_002001201.1| cold-shock domain family protein [Neisseria gonorrhoeae
          NCCP11945]
 gi|239998604|ref|ZP_04718528.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|240013727|ref|ZP_04720640.1| transcriptional regulator [Neisseria gonorrhoeae DGI18]
 gi|240016165|ref|ZP_04722705.1| transcriptional regulator [Neisseria gonorrhoeae FA6140]
 gi|240080309|ref|ZP_04724852.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|240112520|ref|ZP_04727010.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|240115260|ref|ZP_04729322.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|240117547|ref|ZP_04731609.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|240120797|ref|ZP_04733759.1| transcriptional regulator [Neisseria gonorrhoeae PID24-1]
 gi|240123102|ref|ZP_04736058.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|240125353|ref|ZP_04738239.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
 gi|240127806|ref|ZP_04740467.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|254493324|ref|ZP_05106495.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|254804709|ref|YP_003082930.1| putative cold-shock protein [Neisseria meningitidis alpha14]
 gi|260440922|ref|ZP_05794738.1| transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|268594462|ref|ZP_06128629.1| cold-shock domain-containing protein [Neisseria gonorrhoeae
          35/02]
 gi|268596458|ref|ZP_06130625.1| cold-shock domain-containing protein [Neisseria gonorrhoeae FA19]
 gi|268598590|ref|ZP_06132757.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268600943|ref|ZP_06135110.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268603250|ref|ZP_06137417.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268681730|ref|ZP_06148592.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|268683957|ref|ZP_06150819.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
 gi|268686202|ref|ZP_06153064.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|291044245|ref|ZP_06569954.1| cold-shock domain-containing protein [Neisseria gonorrhoeae DGI2]
 gi|293399442|ref|ZP_06643595.1| cold shock protein (beta-ribbon, CspA family) [Neisseria
          gonorrhoeae F62]
 gi|298368622|ref|ZP_06979940.1| cold shock transcription regulator protein [Neisseria sp. oral
          taxon 014 str. F0314]
 gi|313668692|ref|YP_004048976.1| transcriptional regulator [Neisseria lactamica ST-640]
 gi|319637942|ref|ZP_07992708.1| transcriptional regulator [Neisseria mucosa C102]
 gi|7226073|gb|AAF41249.1| cold-shock domain family protein [Neisseria meningitidis MC58]
 gi|59717748|gb|AAW89153.1| putative cold shock protein [Neisseria gonorrhoeae FA 1090]
 gi|120866322|emb|CAM10063.1| putative transcriptional regulator [Neisseria meningitidis FAM18]
 gi|193933443|gb|ACF29267.1| cold-shock domain family protein [Neisseria gonorrhoeae
          NCCP11945]
 gi|226512364|gb|EEH61709.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|254668251|emb|CBA05095.1| putative cold-shock protein [Neisseria meningitidis alpha14]
 gi|254670465|emb|CBA06133.1| cold-shock DNA-binding domain [Neisseria meningitidis alpha153]
 gi|254672382|emb|CBA05647.1| cold-shock DNA-binding domain [Neisseria meningitidis alpha275]
 gi|261392810|emb|CAX50391.1| putative cold shock protein [Neisseria meningitidis 8013]
 gi|268547851|gb|EEZ43269.1| cold-shock domain-containing protein [Neisseria gonorrhoeae
          35/02]
 gi|268550246|gb|EEZ45265.1| cold-shock domain-containing protein [Neisseria gonorrhoeae FA19]
 gi|268582721|gb|EEZ47397.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268585074|gb|EEZ49750.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268587381|gb|EEZ52057.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268622014|gb|EEZ54414.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|268624241|gb|EEZ56641.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
 gi|268626486|gb|EEZ58886.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|291011139|gb|EFE03135.1| cold-shock domain-containing protein [Neisseria gonorrhoeae DGI2]
 gi|291610011|gb|EFF39133.1| cold shock protein (beta-ribbon, CspA family) [Neisseria
          gonorrhoeae F62]
 gi|298282625|gb|EFI24112.1| cold shock transcription regulator protein [Neisseria sp. oral
          taxon 014 str. F0314]
 gi|308389012|gb|ADO31332.1| cold-shock domain-containing protein [Neisseria meningitidis
          alpha710]
 gi|309379406|emb|CBX21973.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006154|emb|CBN87615.1| putative transcriptional regulator [Neisseria lactamica 020-06]
 gi|317401097|gb|EFV81752.1| transcriptional regulator [Neisseria mucosa C102]
 gi|319410197|emb|CBY90535.1| putative cold shock protein [Neisseria meningitidis WUE 2594]
 gi|325127943|gb|EGC50845.1| cold-shock DNA-binding domain protein [Neisseria meningitidis
          N1568]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D V     GK
Sbjct: 4  GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFD-VTTGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|325261145|ref|ZP_08127883.1| conserved domain protein [Clostridium sp. D5]
 gi|324032599|gb|EGB93876.1| conserved domain protein [Clostridium sp. D5]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 40/57 (70%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N  KG+GFIT + +   G+DVF+H S +AS G  +L EGQ V++D  +
Sbjct: 1  MNNGTVKWFNAQKGFGFITNDAN---GEDVFVHFSGIASDGYKSLEEGQKVSFDITE 54


>gi|295112263|emb|CBL29013.1| cold-shock DNA-binding protein family [Synergistetes bacterium
          SGP1]
          Length = 66

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFIT     + G DVF+H SA+   G   L EGQ V+++ V N   G
Sbjct: 3  QGTVKWFNESKGYGFIT----ADEGKDVFVHYSAIQGDGFKTLAEGQKVSFEIV-NGEKG 57

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 58 PQAANVEKL 66


>gi|302557419|ref|ZP_07309761.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
 gi|302475037|gb|EFL38130.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A  G   L EGQ VT+D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDGG---GADVFAHYSNIAGQGFRELLEGQKVTFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|149182147|ref|ZP_01860630.1| CspB [Bacillus sp. SG-1]
 gi|148850179|gb|EDL64346.1| CspB [Bacillus sp. SG-1]
          Length = 65

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 5/64 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG     +DVF+H SA+   G   L EGQ V+++ +++ A G
Sbjct: 3  QGKVKWFNAEKGFGFIEVEGQ----EDVFVHFSAIQGEGFKTLEEGQTVSFE-IEDGARG 57

Query: 64 KYSA 67
            +A
Sbjct: 58 PQAA 61


>gi|237749127|ref|ZP_04579607.1| cold-shock DNA-binding domain-containing protein [Oxalobacter
          formigenes OXCC13]
 gi|229380489|gb|EEO30580.1| cold-shock DNA-binding domain-containing protein [Oxalobacter
          formigenes OXCC13]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITPE   + G+D+F H SA+   G   L EGQ V ++  Q
Sbjct: 4  GTVKWFNDSKGFGFITPE---DGGEDLFAHFSAINMNGFKTLKEGQKVQFEVTQ 54


>gi|254522559|ref|ZP_05134614.1| cold-shock domain family protein [Stenotrophomonas sp. SKA14]
 gi|219720150|gb|EED38675.1| cold-shock domain family protein [Stenotrophomonas sp. SKA14]
          Length = 69

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI    S ++G+DVF+H  A+ + G  +L EGQ VT++ VQ
Sbjct: 7  GTVKWFNDAKGFGFI----SRQNGEDVFVHFRAIETHGFKSLKEGQSVTFEVVQ 56


>gi|218900031|ref|YP_002448442.1| cold shock protein CspD [Bacillus cereus G9842]
 gi|228903378|ref|ZP_04067509.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|228910715|ref|ZP_04074526.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|228942044|ref|ZP_04104587.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228967983|ref|ZP_04128992.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228974975|ref|ZP_04135536.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228981568|ref|ZP_04141865.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|229020116|ref|ZP_04176895.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|229026344|ref|ZP_04182702.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|229175579|ref|ZP_04303089.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|218540595|gb|ACK92989.1| cold shock protein CspD [Bacillus cereus G9842]
 gi|228607975|gb|EEK65287.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|228734944|gb|EEL85581.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|228741182|gb|EEL91401.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|228778247|gb|EEM26517.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|228784828|gb|EEM32846.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228791707|gb|EEM39300.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228817713|gb|EEM63795.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228848983|gb|EEM93826.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|228856339|gb|EEN00868.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|326942646|gb|AEA18542.1| cold shock protein [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 66

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 1  MQTGKVKWFNGEKGFGFIEVEG----GEDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGN 55


>gi|220918462|ref|YP_002493766.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|219956316|gb|ACL66700.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFIT +G    G+DVF H +A+ + G  +L EGQ V +D  +
Sbjct: 4  GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQAEGFRSLAEGQKVEFDVTK 54


>gi|37725743|gb|AAO32341.1| cold shock protein 1 [Streptomyces sp. AA8321]
          Length = 65

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q VT+D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINASGFRSLEENQQVTFDVTQ 54


>gi|319787046|ref|YP_004146521.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317465558|gb|ADV27290.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 69

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP    ESG D+F+H  ++  +G  +L EGQ V++  VQ
Sbjct: 7  GTVKWFNDAKGFGFITP----ESGADLFVHFRSIQGSGFKSLQEGQKVSFIVVQ 56


>gi|307328611|ref|ZP_07607784.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306885723|gb|EFN16736.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L E Q VT+D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINATGFRSLEENQAVTFDVTQGPKGPQ 60

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 61 --AENVSPV 67


>gi|292487397|ref|YP_003530269.1| cold shock-like protein CspG [Erwinia amylovora CFBP1430]
 gi|292898644|ref|YP_003538013.1| cold shock protein [Erwinia amylovora ATCC 49946]
 gi|291198492|emb|CBJ45600.1| cold shock protein [Erwinia amylovora ATCC 49946]
 gi|291552816|emb|CBA19861.1| Cold shock-like protein cspG (CPS-G) [Erwinia amylovora CFBP1430]
 gi|312171502|emb|CBX79760.1| Cold shock-like protein cspG (CPS-G) [Erwinia amylovora ATCC
          BAA-2158]
          Length = 70

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++PDKG+GFI+P   T+   DVF+H SA+ + G   L EGQ V +  ++N   G 
Sbjct: 7  GLVKWFSPDKGFGFISP---TDGSKDVFVHFSAIQNGGFKTLEEGQKVEFT-IENGQKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|163751591|ref|ZP_02158812.1| cold shock domain family protein [Shewanella benthica KT99]
 gi|294141301|ref|YP_003557279.1| cold shock domain family protein [Shewanella violacea DSS12]
 gi|161328503|gb|EDP99657.1| cold shock domain family protein [Shewanella benthica KT99]
 gi|293327770|dbj|BAJ02501.1| cold shock domain family protein [Shewanella violacea DSS12]
          Length = 68

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI      ESG DVF+H  A+ S G   L EGQ V +   Q     +
Sbjct: 6  GVVKWFNSDKGFGFI----EQESGPDVFVHFRAIQSDGFKTLDEGQKVQFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+ +V
Sbjct: 62 --AENVTIV 68


>gi|261212918|ref|ZP_05927202.1| cold shock protein CspG [Vibrio sp. RC341]
 gi|262402962|ref|ZP_06079522.1| cold shock transcriptional regulator CspA [Vibrio sp. RC586]
 gi|260837983|gb|EEX64660.1| cold shock protein CspG [Vibrio sp. RC341]
 gi|262350461|gb|EEY99594.1| cold shock transcriptional regulator CspA [Vibrio sp. RC586]
          Length = 70

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N  KG+GFITP+     G DVF+H +++AS G+  L EGQ V +   Q
Sbjct: 7  GSVKWFNESKGFGFITPD---IGGSDVFVHFNSIASGGVKTLFEGQKVNFSIEQ 57


>gi|328883551|emb|CCA56790.1| cold shock protein [Streptomyces venezuelae ATCC 10712]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ V++D  Q      
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIAASGFRELQEGQKVSFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|229121251|ref|ZP_04250482.1| Cold shock-like protein cspB [Bacillus cereus 95/8201]
 gi|228662096|gb|EEL17705.1| Cold shock-like protein cspB [Bacillus cereus 95/8201]
          Length = 77

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG+    DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 14 QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 68

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 69 PQAANVVKL 77


>gi|224824174|ref|ZP_03697282.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
 gi|224603593|gb|EEG09768.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+   E GDD+F H S + + G   L E Q V++D
Sbjct: 4  GTVKWFNDSKGFGFITPD---EGGDDIFAHFSQIKANGFKTLAENQRVSFD 51


>gi|332974564|gb|EGK11484.1| cold shock transcription regulator protein [Kingella kingae ATCC
          23330]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D V     GK
Sbjct: 4  GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFD-VTTGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|330983366|gb|EGH81469.1| cold shock domain family protein [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 55

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 4/53 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G++KW+N +KG+GFITP    ESG D+F+H  A+   G  +L EGQ VT+  V
Sbjct: 7  GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAV 55


>gi|170725719|ref|YP_001759745.1| cold-shock DNA-binding domain-containing protein [Shewanella
          woodyi ATCC 51908]
 gi|169811066|gb|ACA85650.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
          51908]
          Length = 70

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI+ E     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 7  GTVKWFNEEKGFGFISQE---NGGADVFVHFRAIASDGFKTLAEGQKVSFEVEQ 57


>gi|322434962|ref|YP_004217174.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321162689|gb|ADW68394.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 66

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 40/57 (70%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KG+GFI    S ++G+DVF H SA+ S+G  +L EGQ V ++ V+
Sbjct: 1  MEQGTVKWFNDAKGFGFI----SRQNGEDVFAHYSAITSSGFKSLQEGQAVQFNVVK 53


>gi|118477138|ref|YP_894289.1| cold-shock DNA-binding protein family protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|228926734|ref|ZP_04089802.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228932984|ref|ZP_04095847.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|118416363|gb|ABK84782.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
          str. Al Hakam]
 gi|228826585|gb|EEM72356.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228832847|gb|EEM78416.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 77

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG+    DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 14 QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 68

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 69 PQAANVVKL 77


>gi|134301076|ref|YP_001114572.1| cold-shock DNA-binding domain-containing protein
          [Desulfotomaculum reducens MI-1]
 gi|134053776|gb|ABO51747.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens
          MI-1]
          Length = 65

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  EG    G DVF H SA+   G   L EGQ V +D V+   N 
Sbjct: 2  QGTVKWFNAEKGFGFIEVEG----GKDVFAHFSAITGDGYKTLEEGQRVEFDVVE--GNR 55

Query: 64 KYSAENL 70
             AEN+
Sbjct: 56 GPQAENI 62


>gi|330982957|gb|EGH81060.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 50

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 34/46 (73%), Gaps = 3/46 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
          G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ
Sbjct: 7  GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDGFKSLKEGQ 49


>gi|311031676|ref|ZP_07709766.1| cold shock protein [Bacillus sp. m3-13]
          Length = 65

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G +KW+N +KG+GFI  +G     DDVF+H SA+   G  +L EGQ VT++  Q
Sbjct: 3  EGKVKWFNAEKGFGFIEVDGQ----DDVFVHFSAIQGEGFKSLEEGQTVTFEIEQ 53


>gi|299144112|ref|ZP_07037192.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str.
          F0131]
 gi|298518597|gb|EFI42336.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str.
          F0131]
          Length = 65

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFIT     E G DVF H S +   G   L EGQ V +D V+ +   
Sbjct: 2  KGKVKWFNGEKGFGFIT----AEDGKDVFAHFSQIQKEGFKTLEEGQDVEFDVVEKEKGP 57

Query: 64 KYSAENLKLV 73
          +  AEN+ ++
Sbjct: 58 Q--AENIVIL 65


>gi|224033259|gb|ACN35705.1| unknown [Zea mays]
          Length = 110

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 3/52 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           RG++KW+N  KG+GFI+PE  +E   D+F+H+S++ S G  +L EG+ V +
Sbjct: 7  QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEF 55


>gi|90414568|ref|ZP_01222542.1| putative cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90414570|ref|ZP_01222544.1| putative cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90324375|gb|EAS40941.1| putative cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90324377|gb|EAS40943.1| putative cold shock-like protein [Photobacterium profundum 3TCK]
          Length = 69

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V++D  Q
Sbjct: 6  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQ 56


>gi|309812766|ref|ZP_07706505.1| cold shock-like protein CspE [Dermacoccus sp. Ellin185]
 gi|308433283|gb|EFP57176.1| cold shock-like protein CspE [Dermacoccus sp. Ellin185]
          Length = 67

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L EGQ V ++  Q D
Sbjct: 3  QGTVKWFNAEKGFGFIEQDG---GGADVFVHFSAIQTNGYRSLDEGQRVEFEITQGD 56


>gi|291616468|ref|YP_003519210.1| CspB [Pantoea ananatis LMG 20103]
 gi|291151498|gb|ADD76082.1| CspB [Pantoea ananatis LMG 20103]
 gi|327392905|dbj|BAK10327.1| cold shock-like protein CspB [Pantoea ananatis AJ13355]
          Length = 70

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW+N +KG+GFI+P+  ++   DVF+H SA+      +L EGQ V +  V+N A G
Sbjct: 6  RGTVKWFNAEKGFGFISPQDGSK---DVFVHFSAIQGTDFRSLDEGQQVEF-TVENGAKG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVVGL 70


>gi|255523658|ref|ZP_05390625.1| cold-shock DNA-binding domain protein [Clostridium
          carboxidivorans P7]
 gi|255512713|gb|EET88986.1| cold-shock DNA-binding domain protein [Clostridium
          carboxidivorans P7]
          Length = 65

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFIT E     G DVF+H S + S G  +L EGQ V++D V+      
Sbjct: 3  GTVKWFNGEKGFGFITGE----DGKDVFVHFSQIKSEGYKSLEEGQEVSFDAVKGPKG-- 56

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 57 LQAENVTIL 65


>gi|169786884|ref|YP_001705697.1| cold shock protein [Acinetobacter baumannii SDF]
 gi|260558148|ref|ZP_05830357.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
 gi|169150801|emb|CAP02995.1| cold shock protein [Acinetobacter baumannii]
 gi|260408376|gb|EEX01685.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
          Length = 71

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          V +G++KW+N  KG+GFI      ESG DVF H S +AS+G   L EGQ V +   Q
Sbjct: 6  VVKGTVKWFNETKGFGFI----QQESGPDVFAHFSEIASSGFKTLFEGQQVEFSVAQ 58


>gi|86157661|ref|YP_464446.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|197123033|ref|YP_002134984.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|220917823|ref|YP_002493127.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85774172|gb|ABC81009.1| cold-shock DNA-binding protein family [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|196172882|gb|ACG73855.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|219955677|gb|ACL66061.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 66

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI+ EG    G+DVF+H +A+   G   L EG+ V +D  Q
Sbjct: 4  GTVKWFNDAKGYGFISQEG----GEDVFVHHTAIQMDGFRTLKEGERVEFDVTQ 53


>gi|90023400|ref|YP_529227.1| cold-shock DNA-binding protein family protein [Saccharophagus
          degradans 2-40]
 gi|89953000|gb|ABD83015.1| cold-shock DNA-binding protein family [Saccharophagus degradans
          2-40]
          Length = 69

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      +SG DVF H SA+AS+G   L EGQ V +   Q     +
Sbjct: 7  GTVKWFNESKGFGFI----EQKSGPDVFAHFSAIASSGFKTLAEGQQVEFTVTQGQKGPQ 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 --AENI 66


>gi|56416469|ref|YP_153543.1| cold shock protein [Anaplasma marginale str. St. Maries]
 gi|222474838|ref|YP_002563253.1| cold shock protein (cspA) [Anaplasma marginale str. Florida]
 gi|269959118|ref|YP_003328907.1| putative cold-shock protein [Anaplasma centrale str. Israel]
 gi|56387701|gb|AAV86288.1| cold shock protein [Anaplasma marginale str. St. Maries]
 gi|222418974|gb|ACM48997.1| cold shock protein (cspA) [Anaplasma marginale str. Florida]
 gi|269848949|gb|ACZ49593.1| putative cold-shock protein [Anaplasma centrale str. Israel]
          Length = 92

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 12/81 (14%)

Query: 5  GSIKWYNPDKGYGFITPEGSTE---------SGD-DVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++ +KGYGFI  +GS +          GD DVF+H +++  + + NL EGQ V Y
Sbjct: 14 GHVKWFSVEKGYGFICKDGSDDGKSGGASFGRGDKDVFVHITSLQRSRIDNLREGQRVRY 73

Query: 55 DYVQNDANGKYSAENLKLVPK 75
              +++NGK SA NL+++ +
Sbjct: 74 QL--DESNGKVSAVNLEVLSE 92


>gi|126173707|ref|YP_001049856.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS155]
 gi|125996912|gb|ABN60987.1| cold-shock DNA-binding protein family [Shewanella baltica OS155]
          Length = 69

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFI+P+     G D F+H  A+ S G   L EGQ V++D  Q
Sbjct: 6  GVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQ 56


>gi|54301716|ref|YP_131709.1| putative cold shock-like protein [Photobacterium profundum SS9]
 gi|46915136|emb|CAG21909.1| putative Cold shock-like protein [Photobacterium profundum SS9]
          Length = 79

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 16 GLVKWFNEDKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 66


>gi|222099844|ref|YP_002534412.1| Cold shock-like protein [Thermotoga neapolitana DSM 4359]
 gi|221572234|gb|ACM23046.1| Cold shock-like protein [Thermotoga neapolitana DSM 4359]
          Length = 66

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++  KGYGFIT     + G DVF+H SA+   G   L EGQ+V ++ VQ    G
Sbjct: 2  RGKVKWFDAKKGYGFITK----DEGGDVFVHWSAIEMEGFKTLKEGQVVEFE-VQEGKKG 56

Query: 64 KYSA 67
            +A
Sbjct: 57 PQAA 60


>gi|16801058|ref|NP_471326.1| hypothetical protein lin1992 [Listeria innocua Clip11262]
 gi|16803918|ref|NP_465403.1| hypothetical protein lmo1879 [Listeria monocytogenes EGD-e]
 gi|46908111|ref|YP_014500.1| cold-shock domain-contain protein [Listeria monocytogenes
          serotype 4b str. F2365]
 gi|116873314|ref|YP_850095.1| cold shock-like protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|217963969|ref|YP_002349647.1| hypothetical protein LMHCC_0678 [Listeria monocytogenes HCC23]
 gi|224500231|ref|ZP_03668580.1| hypothetical protein LmonF1_11339 [Listeria monocytogenes Finland
          1988]
 gi|224501322|ref|ZP_03669629.1| hypothetical protein LmonFR_02165 [Listeria monocytogenes FSL
          R2-561]
 gi|226224482|ref|YP_002758589.1| cold shock protein [Listeria monocytogenes Clip81459]
 gi|254826079|ref|ZP_05231080.1| cspD [Listeria monocytogenes FSL J1-194]
 gi|254827237|ref|ZP_05231924.1| cspD [Listeria monocytogenes FSL N3-165]
 gi|254831521|ref|ZP_05236176.1| cold shock protein [Listeria monocytogenes 10403S]
 gi|254852782|ref|ZP_05242130.1| cspD [Listeria monocytogenes FSL R2-503]
 gi|254899425|ref|ZP_05259349.1| cold shock protein [Listeria monocytogenes J0161]
 gi|254912436|ref|ZP_05262448.1| cspD [Listeria monocytogenes J2818]
 gi|254931951|ref|ZP_05265310.1| cspD [Listeria monocytogenes HPB2262]
 gi|254936763|ref|ZP_05268460.1| cspD [Listeria monocytogenes F6900]
 gi|254992229|ref|ZP_05274419.1| cold shock protein [Listeria monocytogenes FSL J2-064]
 gi|255025065|ref|ZP_05297051.1| cold shock protein [Listeria monocytogenes FSL J1-208]
 gi|255521585|ref|ZP_05388822.1| cold shock protein [Listeria monocytogenes FSL J1-175]
 gi|284802324|ref|YP_003414189.1| hypothetical protein LM5578_2080 [Listeria monocytogenes 08-5578]
 gi|284995466|ref|YP_003417234.1| hypothetical protein LM5923_2031 [Listeria monocytogenes 08-5923]
 gi|289435225|ref|YP_003465097.1| cold shock protein CspD [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|290892995|ref|ZP_06555984.1| cspD protein [Listeria monocytogenes FSL J2-071]
 gi|300763811|ref|ZP_07073808.1| hypothetical protein LMHG_10648 [Listeria monocytogenes FSL
          N1-017]
 gi|315282896|ref|ZP_07871202.1| conserved domain protein [Listeria marthii FSL S4-120]
 gi|16411332|emb|CAC99957.1| cspD [Listeria monocytogenes EGD-e]
 gi|16414493|emb|CAC97222.1| cspD [Listeria innocua Clip11262]
 gi|46881381|gb|AAT04677.1| cold-shock domain family protein [Listeria monocytogenes serotype
          4b str. F2365]
 gi|116742192|emb|CAK21316.1| cold shock-like protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|217333239|gb|ACK39033.1| conserved domain protein [Listeria monocytogenes HCC23]
 gi|225876944|emb|CAS05653.1| Putative cold shock protein [Listeria monocytogenes serotype 4b
          str. CLIP 80459]
 gi|258599620|gb|EEW12945.1| cspD [Listeria monocytogenes FSL N3-165]
 gi|258606109|gb|EEW18717.1| cspD [Listeria monocytogenes FSL R2-503]
 gi|258609359|gb|EEW21967.1| cspD [Listeria monocytogenes F6900]
 gi|284057886|gb|ADB68827.1| hypothetical protein LM5578_2080 [Listeria monocytogenes 08-5578]
 gi|284060933|gb|ADB71872.1| hypothetical protein LM5923_2031 [Listeria monocytogenes 08-5923]
 gi|289171469|emb|CBH28013.1| cold shock protein CspD [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|290557355|gb|EFD90880.1| cspD protein [Listeria monocytogenes FSL J2-071]
 gi|293583503|gb|EFF95535.1| cspD [Listeria monocytogenes HPB2262]
 gi|293590418|gb|EFF98752.1| cspD [Listeria monocytogenes J2818]
 gi|293595320|gb|EFG03081.1| cspD [Listeria monocytogenes FSL J1-194]
 gi|300515547|gb|EFK42597.1| hypothetical protein LMHG_10648 [Listeria monocytogenes FSL
          N1-017]
 gi|307571461|emb|CAR84640.1| cold-shock domain family protein [Listeria monocytogenes L99]
 gi|313608061|gb|EFR84139.1| conserved domain protein [Listeria monocytogenes FSL F2-208]
 gi|313613460|gb|EFR87298.1| conserved domain protein [Listeria marthii FSL S4-120]
 gi|313618218|gb|EFR90291.1| conserved domain protein [Listeria innocua FSL S4-378]
 gi|313623202|gb|EFR93457.1| conserved domain protein [Listeria innocua FSL J1-023]
 gi|313632692|gb|EFR99666.1| conserved domain protein [Listeria seeligeri FSL N1-067]
 gi|313637242|gb|EFS02750.1| conserved domain protein [Listeria seeligeri FSL S4-171]
 gi|328466229|gb|EGF37386.1| cold shock protein CspD [Listeria monocytogenes 1816]
 gi|328473596|gb|EGF44433.1| cold shock protein CspD [Listeria monocytogenes 220]
 gi|332312320|gb|EGJ25415.1| Cold shock-like protein CspD [Listeria monocytogenes str. Scott
          A]
          Length = 66

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KGYGFI  +G    G+D+F+H +A+   G  +L EGQ VT++ V+ +
Sbjct: 1  MQNGKVKWFNNEKGYGFIESDG----GEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGN 55


>gi|312144553|ref|YP_003995999.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
 gi|311905204|gb|ADQ15645.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
          Length = 67

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M++ G +KW++  KGYGFI      E GDDVF+H SA+   G   L + Q V ++ V+ D
Sbjct: 1  MIYTGKVKWFDAKKGYGFI----EREDGDDVFVHFSAIEDEGFKTLEDEQEVEFEIVEGD 56


>gi|86156680|ref|YP_463465.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|197120682|ref|YP_002132633.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|220915394|ref|YP_002490698.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85773191|gb|ABC80028.1| cold-shock DNA-binding protein family [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|196170531|gb|ACG71504.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|219953248|gb|ACL63632.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 67

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFIT +   + G+DVF H SA++  G  +L EGQ V +D V+
Sbjct: 4  GTVKWFNDAKGFGFITQD---DGGEDVFCHYSAISGDGFKSLAEGQKVEFDVVK 54


>gi|29831363|ref|NP_825997.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29608478|dbj|BAC72532.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 67

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  EG    G DVF+H SA+ ++G  +L E Q V++D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQSVSFDVTQ 54


>gi|15606511|ref|NP_213891.1| cold shock protein [Aquifex aeolicus VF5]
 gi|6225213|sp|O67327|CSP_AQUAE RecName: Full=Cold shock-like protein
 gi|2983729|gb|AAC07291.1| cold shock protein [Aquifex aeolicus VF5]
          Length = 70

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  RG++KW++ DKGYGFIT E   ++  DVF+H + +   G   L +GQ V +D V+ D
Sbjct: 1  MSFRGTVKWFSKDKGYGFITRE---DTNADVFVHFTDIQMEGFKTLQKGQKVEFDVVE-D 56

Query: 61 ANGKYSAENLKLV 73
            G   A+N++++
Sbjct: 57 TKGP-RAKNVRVL 68


>gi|212712933|ref|ZP_03321061.1| hypothetical protein PROVALCAL_04031 [Providencia alcalifaciens
          DSM 30120]
 gi|212684411|gb|EEB43939.1| hypothetical protein PROVALCAL_04031 [Providencia alcalifaciens
          DSM 30120]
          Length = 81

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE  ++   DVF+H SA++  G   L EGQ V ++ +   A G
Sbjct: 17 KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAISGDGFKTLAEGQKVEFE-ITEGAKG 72

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 73 PSAANVVSL 81


>gi|255027485|ref|ZP_05299471.1| cold shock protein [Listeria monocytogenes FSL J2-003]
          Length = 65

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KGYGFI  +G    G+D+F+H +A+   G  +L EGQ VT++ V+ +
Sbjct: 1  MQNGKVKWFNNEKGYGFIESDG----GEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGN 55


>gi|160933904|ref|ZP_02081291.1| hypothetical protein CLOLEP_02766 [Clostridium leptum DSM 753]
 gi|156866577|gb|EDO59949.1| hypothetical protein CLOLEP_02766 [Clostridium leptum DSM 753]
          Length = 70

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GF++ +     G+DVF+H SA+   G  +L EGQ VT+D   +  
Sbjct: 1  MNNGTVKWFNSEKGFGFLSND---NGGEDVFVHFSAIVGEGFKSLAEGQKVTFDTETDPK 57

Query: 62 NGK 64
          N K
Sbjct: 58 NSK 60


>gi|90021439|ref|YP_527266.1| cold-shock DNA-binding protein family protein [Saccharophagus
          degradans 2-40]
 gi|89951039|gb|ABD81054.1| cold-shock DNA-binding protein family [Saccharophagus degradans
          2-40]
          Length = 75

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTE--SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +G++KW+N  +GYGFIT  G+TE   GDD+F+H  ++   G  +L EGQ V +   Q D 
Sbjct: 6  KGTVKWFNNARGYGFITA-GATEEKEGDDIFVHYRSIRGEGYKSLNEGQAVEFSLQQGDK 64

Query: 62 NGKYSAENLKLV 73
             + A+++ L+
Sbjct: 65 G--FHADDVALI 74


>gi|23098034|ref|NP_691500.1| cold shock protein [Oceanobacillus iheyensis HTE831]
 gi|22776259|dbj|BAC12535.1| cold shock protein [Oceanobacillus iheyensis HTE831]
          Length = 65

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI      E GDDVF+H SA+ + G   L EGQ V ++ V+ +  G 
Sbjct: 3  GKVKWFNAEKGFGFI----EREDGDDVFVHFSAIQADGFKTLEEGQDVEFEIVEGN-RGP 57

Query: 65 YSAENLKL 72
           +A  ++L
Sbjct: 58 QAANVVRL 65


>gi|331702398|ref|YP_004399357.1| cold-shock DNA-binding domain-containing protein [Lactobacillus
          buchneri NRRL B-30929]
 gi|329129741|gb|AEB74294.1| cold-shock DNA-binding domain protein [Lactobacillus buchneri
          NRRL B-30929]
          Length = 67

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 5/59 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKGYGFIT    T+ G DVF+H SA+   G  +L EGQ VT D   +D
Sbjct: 1  MKQGTVKWFNADKGYGFIT----TDDG-DVFVHFSAINKDGFKSLDEGQKVTLDVEDSD 54


>gi|296116126|ref|ZP_06834744.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295977232|gb|EFG83992.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 208

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT---EGQLVTYDYVQND 60
           RG +KWYN  KG+GFITPE     G D+F+H SA+  +GL  LT   EGQ      V+  
Sbjct: 141 RGIVKWYNATKGFGFITPE---SGGKDIFVHASALERSGLTGLTSLSEGQTANVQVVEGQ 197

Query: 61  ANGKYSA 67
              + +A
Sbjct: 198 KGPEAAA 204



 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
          ++KW+N +KG+GF+  E S  SG DVFLH +A+   G   ++ G  +     Q     + 
Sbjct: 38 TVKWFNSEKGFGFV--ELSDGSG-DVFLHANALNPTGFETVSPGSTLVVRIGQGPKGRQV 94

Query: 66 SA 67
          +A
Sbjct: 95 AA 96


>gi|78044182|ref|YP_359029.1| cold shock protein CspC [Carboxydothermus hydrogenoformans
          Z-2901]
 gi|77996297|gb|ABB15196.1| cold shock protein CspC [Carboxydothermus hydrogenoformans
          Z-2901]
          Length = 65

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KGYGFI      E G DVF+H SA+   G   L EGQ V ++ V+    G
Sbjct: 2  QGKVKWFDPAKGYGFI----EREDGGDVFVHFSAIKGNGFKTLEEGQRVEFNIVEG-TRG 56

Query: 64 KYSAENLKL 72
            +A+ +KL
Sbjct: 57 PQAADVVKL 65


>gi|90409803|ref|ZP_01217820.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90329156|gb|EAS45413.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
          Length = 70

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 7  GLVKWFNEDKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 57


>gi|83647395|ref|YP_435830.1| cold shock protein [Hahella chejuensis KCTC 2396]
 gi|83635438|gb|ABC31405.1| Cold shock protein [Hahella chejuensis KCTC 2396]
          Length = 69

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      ESG DVF H SA+  +G   LTEGQ V +   Q     +
Sbjct: 7  GTVKWFNESKGFGFI----EQESGPDVFAHFSAITGSGFKTLTEGQKVEFTITQGQKGPQ 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 --AENI 66


>gi|148270113|ref|YP_001244573.1| cold-shock DNA-binding domain-containing protein [Thermotoga
          petrophila RKU-1]
 gi|170288941|ref|YP_001739179.1| cold-shock DNA-binding domain-containing protein [Thermotoga sp.
          RQ2]
 gi|281412545|ref|YP_003346624.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
          RKU-10]
 gi|147735657|gb|ABQ46997.1| cold-shock DNA-binding protein family [Thermotoga petrophila
          RKU-1]
 gi|170176444|gb|ACB09496.1| cold-shock DNA-binding domain protein [Thermotoga sp. RQ2]
 gi|281373648|gb|ADA67210.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
          RKU-10]
          Length = 66

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++  KGYGFIT     + G DVF+H SA+   G   L EGQ+V ++ +Q    G
Sbjct: 2  RGKVKWFDAKKGYGFITK----DEGGDVFVHWSAIEMEGFKTLKEGQVVEFE-IQEGKKG 56

Query: 64 KYSAENLKLV 73
            +A ++K+V
Sbjct: 57 PQAA-HVKVV 65


>gi|77362297|ref|YP_341871.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76877208|emb|CAI89425.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 68

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFI      ESG DVF H SA+ S G   L EGQ V +   Q     +
Sbjct: 6  GSVKWFNEAKGFGFI----EQESGPDVFAHFSAITSDGFKTLAEGQRVQFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+  +
Sbjct: 62 --AENIVCI 68


>gi|114562869|ref|YP_750382.1| cold-shock DNA-binding domain-containing protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114334162|gb|ABI71544.1| cold-shock DNA-binding protein family [Shewanella frigidimarina
          NCIMB 400]
 gi|149675700|dbj|BAF64729.1| cold shock protein [Shewanella livingstonensis]
          Length = 68

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI      ESG DVF+H  A+ S G   L EGQ V++   Q     +
Sbjct: 6  GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+ +V
Sbjct: 62 --AENVSIV 68


>gi|90023198|ref|YP_529025.1| cold-shock DNA-binding protein family protein [Saccharophagus
          degradans 2-40]
 gi|89952798|gb|ABD82813.1| cold-shock DNA-binding protein family [Saccharophagus degradans
          2-40]
          Length = 69

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      +SG DVF H SA+AS+G   L EGQ V +   Q     +
Sbjct: 7  GTVKWFNESKGFGFI----EQKSGPDVFAHFSAIASSGFKTLAEGQQVEFTVTQGQKGPQ 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 --AENI 66


>gi|310778654|ref|YP_003966987.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
 gi|309747977|gb|ADO82639.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
          Length = 66

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFIT    +E G DVF H S +   G   L EG+ VT++  Q     
Sbjct: 3  KGTVKWFNGEKGFGFIT----SEEGTDVFAHFSEIQKDGFKTLEEGEQVTFEITQGQKGP 58

Query: 64 KYSAENLKLV 73
          +  A N+K V
Sbjct: 59 Q--ASNIKTV 66


>gi|229106451|ref|ZP_04236811.1| hypothetical protein bcere0019_53380 [Bacillus cereus Rock3-28]
 gi|228676997|gb|EEL31483.1| hypothetical protein bcere0019_53380 [Bacillus cereus Rock3-28]
          Length = 66

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G +KW+N DKG+GFI  +G    G+DVF+H SA+   G  +L EGQ VT++
Sbjct: 1  MEQGKVKWFNADKGFGFIERQG----GEDVFVHFSAIQIDGYKSLDEGQSVTFE 50


>gi|134100407|ref|YP_001106068.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|291007339|ref|ZP_06565312.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|133913030|emb|CAM03143.1| cold-shock DNA-binding domain protein [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 67

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP+G    G DVF H SA+ + G   L E Q V ++  Q
Sbjct: 4  GTVKWFNAEKGFGFITPDG---GGADVFAHYSAIDATGFRTLDENQRVEFEIAQ 54


>gi|74272681|gb|ABA01136.1| putative nucleic acid-binding protein [Chlamydomonas incerta]
          Length = 226

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 46/70 (65%), Gaps = 4/70 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  +G++KW+N  KG+GFITP G    G+D+F+H++ + S G  +L EG+ V ++ V+  
Sbjct: 5  LRQQGTVKWFNATKGFGFITPGG---GGEDLFVHQTNINSEGFRSLREGEAVEFE-VEAG 60

Query: 61 ANGKYSAENL 70
           +G+  A N+
Sbjct: 61 PDGRSKAVNV 70


>gi|15644431|ref|NP_229483.1| cold shock protein [Thermotoga maritima MSB8]
 gi|6225214|sp|O54310|CSP_THEMA RecName: Full=Cold shock-like protein
 gi|16974798|pdb|1G6P|A Chain A, Solution Nmr Structure Of The Cold Shock Protein From
          The Hyperthermophilic Bacterium Thermotoga Maritima
 gi|4982259|gb|AAD36750.1|AE001809_2 cold shock protein [Thermotoga maritima MSB8]
 gi|2894098|emb|CAA72105.1| cold shock protein [Thermotoga maritima MSB8]
          Length = 66

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++  KGYGFIT     + G DVF+H SA+   G   L EGQ+V ++ +Q    G
Sbjct: 2  RGKVKWFDSKKGYGFITK----DEGGDVFVHWSAIEMEGFKTLKEGQVVEFE-IQEGKKG 56

Query: 64 KYSAENLKLV 73
            +A ++K+V
Sbjct: 57 PQAA-HVKVV 65


>gi|313671995|ref|YP_004050106.1| cold-shock DNA-binding domain protein [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312938751|gb|ADR17943.1| cold-shock DNA-binding domain protein [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 67

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M + G++KW+N  KGYGFIT    + +G+DVF+H SA+   G  +L EG  V +D V+
Sbjct: 1  MSNTGTVKWFNDTKGYGFIT----SSTGEDVFVHYSAITMDGFKSLKEGDKVNFDIVK 54


>gi|253584039|ref|ZP_04861237.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
 gi|251834611|gb|EES63174.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
          Length = 66

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N DKG+GFI    S E G+D F+H S + S G  +L EGQ VT++  + +
Sbjct: 3  KGTVKWFNKDKGFGFI----SGEDGNDYFVHYSNINSKGFRSLEEGQAVTFEVTEGE 55


>gi|253988509|ref|YP_003039865.1| cold shock-like protein [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|211637909|emb|CAR66538.1| cold shock-like protein (cps-i) [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253779959|emb|CAQ83120.1| cold shock-like protein (cps-i) [Photorhabdus asymbiotica]
          Length = 71

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          GS+KW+N DKG+GFI+P+  ++   DVF+H SA+ S     L EGQ V++  ++N A G
Sbjct: 7  GSVKWFNNDKGFGFISPKNGSK---DVFVHYSAIQSNNFKTLEEGQEVSFS-IENGAKG 61


>gi|194366422|ref|YP_002029032.1| cold-shock DNA-binding domain-containing protein
          [Stenotrophomonas maltophilia R551-3]
 gi|194349226|gb|ACF52349.1| cold-shock DNA-binding domain protein [Stenotrophomonas
          maltophilia R551-3]
          Length = 69

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI    S ++G+DVF+H  A+ + G  +L EGQ V+++ VQ
Sbjct: 7  GTVKWFNDAKGFGFI----SRQNGEDVFVHFRAIETQGFKSLKEGQAVSFEVVQ 56


>gi|319400562|gb|EFV88792.1| cold shock protein cspD [Staphylococcus epidermidis FRI909]
          Length = 66

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N DKG+GFI      ++G+DVF+H S +A  G  +L EGQ V +D V+
Sbjct: 1  MNNGTVKWFNADKGFGFI----ERDNGNDVFVHYSGIAGEGYKSLEEGQNVDFDIVE 53


>gi|169825043|ref|YP_001692654.1| cold shock protein [Finegoldia magna ATCC 29328]
 gi|302379354|ref|ZP_07267841.1| cold shock protein CspA [Finegoldia magna ACS-171-V-Col3]
 gi|167831848|dbj|BAG08764.1| cold shock protein [Finegoldia magna ATCC 29328]
 gi|302312699|gb|EFK94693.1| cold shock protein CspA [Finegoldia magna ACS-171-V-Col3]
          Length = 66

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFIT E +     D+F+H+SA+   G   L EGQ V+YD   +D
Sbjct: 4  GTVKWFNSTKGFGFITGEDNK----DIFVHQSAIQEEGFRTLEEGQKVSYDVEASD 55


>gi|254994694|ref|ZP_05276884.1| cold shock protein (cspA) [Anaplasma marginale str. Mississippi]
 gi|255002811|ref|ZP_05277775.1| cold shock protein (cspA) [Anaplasma marginale str. Puerto Rico]
 gi|255003942|ref|ZP_05278743.1| cold shock protein (cspA) [Anaplasma marginale str. Virginia]
          Length = 91

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 12/81 (14%)

Query: 5  GSIKWYNPDKGYGFITPEGSTE---------SGD-DVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++ +KGYGFI  +GS +          GD DVF+H +++  + + NL EGQ V Y
Sbjct: 13 GHVKWFSVEKGYGFICKDGSDDGKSGGASFGRGDKDVFVHITSLQRSRIDNLREGQRVRY 72

Query: 55 DYVQNDANGKYSAENLKLVPK 75
              +++NGK SA NL+++ +
Sbjct: 73 QL--DESNGKVSAVNLEVLSE 91


>gi|223043029|ref|ZP_03613077.1| conserved domain protein [Staphylococcus capitis SK14]
 gi|314933099|ref|ZP_07840464.1| conserved domain protein [Staphylococcus caprae C87]
 gi|222443883|gb|EEE49980.1| conserved domain protein [Staphylococcus capitis SK14]
 gi|313653249|gb|EFS17006.1| conserved domain protein [Staphylococcus caprae C87]
          Length = 66

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI      E+G DVF+H SA+   G  +L EGQ V +D V+ + 
Sbjct: 1  MNNGTVKWFNSEKGFGFI----ERENGGDVFVHFSAIVEDGYKSLEEGQNVEFDIVEGE- 55

Query: 62 NGKYSAENLKL 72
           G+ +A  +K+
Sbjct: 56 RGEQAANVVKM 66


>gi|220911667|ref|YP_002486976.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|219858545|gb|ACL38887.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
          Length = 68

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N +KGYGFIT +G   SGDD+F+H SA+   G   L EGQ V  +
Sbjct: 4  GTVKWFNAEKGYGFITVDG---SGDDIFVHWSAIQGEGYRALDEGQRVELE 51


>gi|77410386|ref|ZP_00786777.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae COH1]
 gi|77171004|gb|EAO74482.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae COH1]
          Length = 64

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 5/59 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          +G++KW+N +KG+GFI    S+E+G DVF H S +   G   L EGQ VT+D +Q+  N
Sbjct: 3  QGTVKWFNSEKGFGFI----SSETGTDVFAHFSEIKVDGFKTLEEGQKVTFD-IQDGQN 56


>gi|262279162|ref|ZP_06056947.1| predicted protein [Acinetobacter calcoaceticus RUH2202]
 gi|262259513|gb|EEY78246.1| predicted protein [Acinetobacter calcoaceticus RUH2202]
          Length = 69

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 8/71 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      ESG DVF H   +AS+G   L EGQ VT+    N A G+
Sbjct: 7  GTVKWFNETKGFGFI----QQESGPDVFAHFKEIASSGFKTLYEGQKVTF----NIAQGQ 58

Query: 65 YSAENLKLVPK 75
               + ++P+
Sbjct: 59 KGPSAVNIIPE 69


>gi|268590420|ref|ZP_06124641.1| conserved domain protein [Providencia rettgeri DSM 1131]
 gi|291314334|gb|EFE54787.1| conserved domain protein [Providencia rettgeri DSM 1131]
          Length = 69

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE  ++   DVF+H SA+   G   L EGQ V ++  +  A G
Sbjct: 5  KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAIMGDGFKTLAEGQKVEFEITEG-AKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVIPL 69


>gi|21223064|ref|NP_628843.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|256785836|ref|ZP_05524267.1| cold shock protein [Streptomyces lividans TK24]
 gi|289769728|ref|ZP_06529106.1| cold shock protein [Streptomyces lividans TK24]
 gi|7321274|emb|CAB82052.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|289699927|gb|EFD67356.1| cold shock protein [Streptomyces lividans TK24]
          Length = 67

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKG-- 58

Query: 65 YSAENLKL 72
           +AEN+ L
Sbjct: 59 PTAENIVL 66


>gi|21222890|ref|NP_628669.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|256785998|ref|ZP_05524429.1| cold shock protein [Streptomyces lividans TK24]
 gi|289769893|ref|ZP_06529271.1| cold shock protein [Streptomyces lividans TK24]
 gi|7242722|emb|CAB77296.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|289700092|gb|EFD67521.1| cold shock protein [Streptomyces lividans TK24]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q V++D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINAQGFRSLEENQQVSFDVTQGPKGPQ 60

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 61 --AENVTPV 67


>gi|163814818|ref|ZP_02206207.1| hypothetical protein COPEUT_00969 [Coprococcus eutactus ATCC
          27759]
 gi|158450453|gb|EDP27448.1| hypothetical protein COPEUT_00969 [Coprococcus eutactus ATCC
          27759]
          Length = 71

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N +KGYGFI+ +   E+G DVF+H SA+ + G   L EGQ V++D
Sbjct: 1  MKNGTVKWFNGEKGYGFISDD---ETGKDVFVHFSAINADGYKTLNEGQKVSFD 51


>gi|83814144|ref|YP_445684.1| putative cold shock-like protein cspG [Salinibacter ruber DSM
           13855]
 gi|83755538|gb|ABC43651.1| putative cold shock-like protein cspG [Salinibacter ruber DSM
           13855]
          Length = 163

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
           + RG+IKW++ +KG+GFI PE   E G+DVFLH S +  S G  +L EGQ V ++  + +
Sbjct: 95  MQRGTIKWFDTEKGFGFIEPE---EGGEDVFLHVSNITGSTGGDDLREGQTVAFETERTE 151


>gi|302668966|ref|YP_003832791.1| cold shock domain protein CspD2 [Butyrivibrio proteoclasticus
          B316]
 gi|302397306|gb|ADL36209.1| cold shock domain protein CspD2 [Butyrivibrio proteoclasticus
          B316]
          Length = 72

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KG+GFIT    +E G+DVF+H SA++S G   LT+ + V +D V+ D  G
Sbjct: 7  KGAVKWFDNYKGFGFIT----SEDGEDVFVHYSAISSDGYRKLTQDEKVEFD-VRIDDKG 61

Query: 64 KYSAENLKLVP 74
          +  A N++ + 
Sbjct: 62 RTVAVNVRKIS 72


>gi|291523520|emb|CBK81813.1| cold-shock DNA-binding protein family [Coprococcus catus GD/7]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +++G++KW+N  KG+GFI    S E G+DVF+H S + S G  +L EGQ V ++ ++
Sbjct: 1  MNKGTVKWFNNQKGFGFI----SDEQGNDVFVHYSGIQSNGFKSLEEGQEVEFEVIE 53


>gi|238060156|ref|ZP_04604865.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|237881967|gb|EEP70795.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF+H SA+A++G   L EGQ V ++  Q
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GPDVFVHYSAIATSGYRELNEGQKVEFEVTQ 54


>gi|30261699|ref|NP_844076.1| cold shock protein CspB [Bacillus anthracis str. Ames]
 gi|47526914|ref|YP_018263.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184527|ref|YP_027779.1| cold shock protein CspB [Bacillus anthracis str. Sterne]
 gi|49480968|ref|YP_035816.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|65318968|ref|ZP_00391927.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012]
 gi|165869260|ref|ZP_02213919.1| cold shock protein CspB [Bacillus anthracis str. A0488]
 gi|167633426|ref|ZP_02391751.1| cold shock protein CspB [Bacillus anthracis str. A0442]
 gi|167639155|ref|ZP_02397428.1| cold shock protein CspB [Bacillus anthracis str. A0193]
 gi|170686113|ref|ZP_02877335.1| cold shock protein CspB [Bacillus anthracis str. A0465]
 gi|170706544|ref|ZP_02897004.1| cold shock protein CspB [Bacillus anthracis str. A0389]
 gi|177650384|ref|ZP_02933351.1| cold shock protein CspB [Bacillus anthracis str. A0174]
 gi|190566507|ref|ZP_03019425.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I]
 gi|196033540|ref|ZP_03100952.1| cold shock protein CspB [Bacillus cereus W]
 gi|196038892|ref|ZP_03106199.1| cold shock protein CspB [Bacillus cereus NVH0597-99]
 gi|196046644|ref|ZP_03113868.1| cold shock protein CspB [Bacillus cereus 03BB108]
 gi|225863558|ref|YP_002748936.1| cold shock protein CspB [Bacillus cereus 03BB102]
 gi|227815548|ref|YP_002815557.1| cold shock protein CspB [Bacillus anthracis str. CDC 684]
 gi|228914278|ref|ZP_04077893.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228945302|ref|ZP_04107657.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|229183890|ref|ZP_04311106.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1]
 gi|229602706|ref|YP_002866103.1| cold shock protein CspB [Bacillus anthracis str. A0248]
 gi|254683188|ref|ZP_05147049.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
          str. CNEVA-9066]
 gi|254723778|ref|ZP_05185564.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
          str. A1055]
 gi|254734540|ref|ZP_05192252.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
          str. Western North America USA6153]
 gi|254740949|ref|ZP_05198637.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
          str. Kruger B]
 gi|254755191|ref|ZP_05207225.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
          str. Vollum]
 gi|254759728|ref|ZP_05211752.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
          str. Australia 94]
 gi|301053238|ref|YP_003791449.1| cold shock protein [Bacillus anthracis CI]
 gi|30255927|gb|AAP25562.1| cold shock protein CspB [Bacillus anthracis str. Ames]
 gi|47502062|gb|AAT30738.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178454|gb|AAT53830.1| cold shock protein CspB [Bacillus anthracis str. Sterne]
 gi|49332524|gb|AAT63170.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|164714700|gb|EDR20218.1| cold shock protein CspB [Bacillus anthracis str. A0488]
 gi|167512945|gb|EDR88318.1| cold shock protein CspB [Bacillus anthracis str. A0193]
 gi|167531464|gb|EDR94142.1| cold shock protein CspB [Bacillus anthracis str. A0442]
 gi|170128642|gb|EDS97509.1| cold shock protein CspB [Bacillus anthracis str. A0389]
 gi|170669810|gb|EDT20551.1| cold shock protein CspB [Bacillus anthracis str. A0465]
 gi|172083528|gb|EDT68588.1| cold shock protein CspB [Bacillus anthracis str. A0174]
 gi|190562642|gb|EDV16609.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I]
 gi|195993974|gb|EDX57930.1| cold shock protein CspB [Bacillus cereus W]
 gi|196022577|gb|EDX61260.1| cold shock protein CspB [Bacillus cereus 03BB108]
 gi|196030037|gb|EDX68637.1| cold shock protein CspB [Bacillus cereus NVH0597-99]
 gi|225786101|gb|ACO26318.1| cold shock protein CspB [Bacillus cereus 03BB102]
 gi|227005644|gb|ACP15387.1| cold shock protein CspB [Bacillus anthracis str. CDC 684]
 gi|228599542|gb|EEK57146.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1]
 gi|228814274|gb|EEM60540.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228845272|gb|EEM90308.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229267114|gb|ACQ48751.1| cold shock protein CspB [Bacillus anthracis str. A0248]
 gi|300375407|gb|ADK04311.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
          Length = 65

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG+    DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|326331965|ref|ZP_08198251.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325950278|gb|EGD42332.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  E   + GDDVF+H SA+ + G   L E Q V +D  Q     
Sbjct: 3  QGTVKWFNAEKGFGFIAQE---DGGDDVFVHYSAIQTQGYKTLDENQKVEFDVTQGPKGP 59

Query: 64 KYSAENLK 71
          +  AEN++
Sbjct: 60 Q--AENVR 65


>gi|325962509|ref|YP_004240415.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323468596|gb|ADX72281.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI+P+ S++   DVF H SA+ S G  +L E Q V++D  Q
Sbjct: 4  GTVKWFNAEKGFGFISPDDSSQ---DVFAHYSAINSNGFRSLEENQKVSFDTEQ 54


>gi|332669153|ref|YP_004452161.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332338191|gb|AEE44774.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
          484]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KGYGFITP G    G D+F+H SA+   G   L EGQ V ++  Q 
Sbjct: 3  QGTVKWFNAEKGYGFITPTG---GGQDLFVHFSAIQVDGYRTLEEGQQVDFEVGQG 55


>gi|163737381|ref|ZP_02144798.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
          BS107]
 gi|163740951|ref|ZP_02148344.1| cold shock family protein [Phaeobacter gallaeciensis 2.10]
 gi|161385942|gb|EDQ10318.1| cold shock family protein [Phaeobacter gallaeciensis 2.10]
 gi|161388907|gb|EDQ13259.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
          BS107]
          Length = 68

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PEG    G DVF+H S V  +GL  L + Q V ++  +   +G+
Sbjct: 4  GTVKWFNTTKGYGFIEPEG---GGKDVFVHISQVERSGLTGLADNQKVDFEMTEG-RDGR 59

Query: 65 YSAENLK 71
            A +++
Sbjct: 60 QMASDIR 66


>gi|157364239|ref|YP_001471006.1| cold-shock DNA-binding domain-containing protein [Thermotoga
          lettingae TMO]
 gi|157314843|gb|ABV33942.1| putative cold-shock DNA-binding domain protein [Thermotoga
          lettingae TMO]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++P KGYGFIT     + G DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 2  KGTVKWFDPKKGYGFIT----KQEGGDVFVHWSALEMDGFKTLKEGQEVEFE-IQDGPKG 56

Query: 64 KYSAENLKLV 73
            +A ++K+V
Sbjct: 57 PQAA-HVKVV 65


>gi|126173937|ref|YP_001050086.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS155]
 gi|153000230|ref|YP_001365911.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS185]
 gi|160874863|ref|YP_001554179.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS195]
 gi|217973821|ref|YP_002358572.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS223]
 gi|304409808|ref|ZP_07391428.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
 gi|307304164|ref|ZP_07583917.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
 gi|125997142|gb|ABN61217.1| cold-shock DNA-binding protein family [Shewanella baltica OS155]
 gi|151364848|gb|ABS07848.1| putative cold-shock DNA-binding domain protein [Shewanella
          baltica OS185]
 gi|160860385|gb|ABX48919.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195]
 gi|217498956|gb|ACK47149.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223]
 gi|304352326|gb|EFM16724.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
 gi|306913062|gb|EFN43485.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
 gi|315267099|gb|ADT93952.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678]
          Length = 69

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI      ESG DVF+H  A+ S G   L EGQ V++   Q     +
Sbjct: 6  GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+ +V
Sbjct: 62 --AENVTIV 68


>gi|63148792|gb|AAY34518.1| cold shock protein [Bacillus thuringiensis serovar tolworthi]
          Length = 61

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ VT++  Q +
Sbjct: 1  GIVKWFNSEKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN 52


>gi|327440660|dbj|BAK17025.1| cold shock protein [Solibacillus silvestris StLB046]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 4/56 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          +H+G++KW++ +KGYGFI     +  G+DVF+H + +   G  +L EGQ+V +D V
Sbjct: 1  MHQGTVKWFDNEKGYGFI----ESADGEDVFVHFTGIQEEGFRSLDEGQVVEFDLV 52


>gi|302546770|ref|ZP_07299112.1| putative cold shock protein [Streptomyces hygroscopicus ATCC
          53653]
 gi|302464388|gb|EFL27481.1| putative cold shock protein [Streptomyces himastatinicus ATCC
          53653]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 LTAENI 64


>gi|261404404|ref|YP_003240645.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|315644849|ref|ZP_07897978.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|329929715|ref|ZP_08283401.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
 gi|261280867|gb|ACX62838.1| cold-shock DNA-binding domain protein [Paenibacillus sp.
          Y412MC10]
 gi|315279791|gb|EFU43092.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|328935932|gb|EGG32391.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ V ++ V  + 
Sbjct: 1  MQTGTVKWFNAEKGFGFIEVEG----GNDVFVHFSAIQGDGFKTLDEGQRVEFNIV--EG 54

Query: 62 NGKYSAENL 70
          N    AEN+
Sbjct: 55 NRGPQAENV 63


>gi|77361881|ref|YP_341456.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Pseudoalteromonas haloplanktis
          TAC125]
 gi|77361882|ref|YP_341457.1| cold shock-like protein cspE, RNA chaperone, transcription
          antiterminator, affects expression of rpoS and uspA
          [Pseudoalteromonas haloplanktis TAC125]
 gi|76876792|emb|CAI88014.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Pseudoalteromonas haloplanktis
          TAC125]
 gi|76876793|emb|CAI88015.1| Cold shock-like protein cspE, RNA chaperone, transcription
          antiterminator, affects expression of rpoS and uspA
          [Pseudoalteromonas haloplanktis TAC125]
          Length = 69

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFI      ESG DVF H SA+ S G   L EGQ V +   Q     +
Sbjct: 7  GSVKWFNEAKGFGFI----EQESGADVFAHFSAIVSDGFKTLAEGQRVQFTVTQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AEN+  +
Sbjct: 63 --AENIVCI 69


>gi|37526673|ref|NP_930017.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
          TTO1]
 gi|36786105|emb|CAE15157.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
          TTO1]
          Length = 69

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP    +   DVF+H SA+ S G   L EGQ V ++ +Q+   G 
Sbjct: 6  GTVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSEGFKTLAEGQKVEFE-IQDGQKGP 61

Query: 65 YSA 67
           +A
Sbjct: 62 SAA 64


>gi|198282878|ref|YP_002219199.1| cold-shock DNA-binding domain-containing protein
          [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666777|ref|YP_002425079.1| cold-shock protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247399|gb|ACH82992.1| cold-shock DNA-binding domain protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218518990|gb|ACK79576.1| cold-shock protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITPE   E   DVF+H SA+   G   L EG+ V ++  +
Sbjct: 4  GTVKWFNDSKGFGFITPEDGKE---DVFVHHSAIEGTGFKTLAEGERVNFEVTR 54


>gi|221133721|ref|ZP_03560026.1| putative cold shock-like protein cspG [Glaciecola sp. HTCC2999]
          Length = 69

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          GS+KW+N DKGYGFIT +     G DVF+H  A+ S G   L EGQ V+++
Sbjct: 6  GSVKWFNADKGYGFITQD---NGGKDVFVHFRAIQSEGYKTLPEGQKVSFE 53


>gi|222054862|ref|YP_002537224.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
 gi|221564151|gb|ACM20123.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KG+GF+      E+G+DVF+H SA+   G  +LTEG  VT+D  +
Sbjct: 1  MEKGTVKWFNDSKGFGFL----EQENGEDVFVHFSAITGDGFKSLTEGDKVTFDVTR 53


>gi|116693857|ref|YP_839390.1| cold-shock DNA-binding domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|116651857|gb|ABK12497.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
           HI2424]
          Length = 170

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N +KG+GFITP+     GDD+F H S +   G   L EGQ V+Y+      NG 
Sbjct: 107 GTVKWFNDNKGFGFITPD---SGGDDLFAHFSEIRGDGFKTLAEGQKVSYE----TKNGP 159

Query: 65  YSAENLKLVPK 75
              +   +VP+
Sbjct: 160 KGLQASNIVPQ 170


>gi|328883511|emb|CCA56750.1| cold shock protein [Streptomyces venezuelae ATCC 10712]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGPDVFAHFSNIAAQGFRELQEGQKVSFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|21222160|ref|NP_627939.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|256786753|ref|ZP_05525184.1| cold shock protein [Streptomyces lividans TK24]
 gi|289770647|ref|ZP_06530025.1| cold shock protein [Streptomyces lividans TK24]
 gi|5732895|gb|AAD49327.1|AF162937_1 F40 [Streptomyces coelicolor A3(2)]
 gi|7211015|emb|CAB76995.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|289700846|gb|EFD68275.1| cold shock protein [Streptomyces lividans TK24]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q    G+
Sbjct: 4  GTVKWFNAEKGFGFIAQDG---GGADVFAHYSNIATQGFRELQEGQRVNFDVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 57 KGPQAENIVP 66


>gi|158312417|ref|YP_001504925.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
          EAN1pec]
 gi|158107822|gb|ABW10019.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  +G    G DVF+H SA+ SAG  +L E Q V +D  Q     
Sbjct: 3  QGTVKWFNGEKGFGFIAQDGG---GPDVFVHYSAIDSAGFRSLDENQRVEFDVTQGQKGP 59

Query: 64 KYSAENLKLV 73
          +  AE+++ V
Sbjct: 60 Q--AEHVRPV 67


>gi|323357927|ref|YP_004224323.1| cold shock proteins [Microbacterium testaceum StLB037]
 gi|323274298|dbj|BAJ74443.1| cold shock proteins [Microbacterium testaceum StLB037]
          Length = 70

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M  +G++KW+N +KG+GFI P+   + G DVF H SA+ S G  +L E Q V ++  Q
Sbjct: 3  MSTQGTVKWFNSEKGFGFIAPD---DGGQDVFAHYSAIQSGGYRSLEENQRVEFEIAQ 57


>gi|326202744|ref|ZP_08192612.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
          DSM 2782]
 gi|325987328|gb|EGD48156.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
          DSM 2782]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G +KW+N +KG+GFIT +G    G+DVF+H S++ S+G  +L EGQ V +D
Sbjct: 1  MNTGIVKWFNAEKGFGFITVDG----GEDVFVHFSSIQSSGYKSLDEGQRVNFD 50


>gi|254389689|ref|ZP_05004914.1| cold shock protein scoF [Streptomyces clavuligerus ATCC 27064]
 gi|326445343|ref|ZP_08220077.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|197703401|gb|EDY49213.1| cold shock protein scoF [Streptomyces clavuligerus ATCC 27064]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S + S+G   L EGQ VT+D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSNINSSGYRELQEGQAVTFDITQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|161507089|ref|YP_001577043.1| putative cold shock protein [Lactobacillus helveticus DPC 4571]
 gi|160348078|gb|ABX26752.1| putative cold shock protein [Lactobacillus helveticus DPC 4571]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 8/74 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT  GS     DVF+H SA+ + G  +L EGQ V+YD  Q   
Sbjct: 1  MQTGTVKWFNADKGFGFIT--GSDNK--DVFVHFSAIKTDGFKSLEEGQKVSYDVEQ--- 53

Query: 62 NGKYSAENLKLVPK 75
           G    +   +VP+
Sbjct: 54 -GSRGPQATNVVPQ 66


>gi|163939506|ref|YP_001644390.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229011015|ref|ZP_04168209.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048]
 gi|229058330|ref|ZP_04196715.1| Cold shock-like protein cspB [Bacillus cereus AH603]
 gi|229132514|ref|ZP_04261364.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196]
 gi|229166538|ref|ZP_04294291.1| Cold shock-like protein cspB [Bacillus cereus AH621]
 gi|163861703|gb|ABY42762.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
 gi|228616942|gb|EEK74014.1| Cold shock-like protein cspB [Bacillus cereus AH621]
 gi|228650951|gb|EEL06936.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196]
 gi|228720004|gb|EEL71593.1| Cold shock-like protein cspB [Bacillus cereus AH603]
 gi|228750187|gb|EEM00019.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048]
          Length = 65

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N +KG+GFI  EGS    +DVF+H SA+ S G   L EGQ V++D  +
Sbjct: 2  QGKVKWFNNEKGFGFIEMEGS----EDVFVHFSAIQSDGYKALEEGQEVSFDITE 52


>gi|303229892|ref|ZP_07316668.1| cold shock protein CspB [Veillonella atypica ACS-134-V-Col7a]
 gi|303232195|ref|ZP_07318898.1| cold shock protein CspB [Veillonella atypica ACS-049-V-Sch6]
 gi|302513301|gb|EFL55340.1| cold shock protein CspB [Veillonella atypica ACS-049-V-Sch6]
 gi|302515448|gb|EFL57414.1| cold shock protein CspB [Veillonella atypica ACS-134-V-Col7a]
          Length = 65

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KGYGFI      E G DVF+H SA+   G  +L+EGQ VT+D V  D N  
Sbjct: 3  GKVKWFSAEKGYGFI----EREDGSDVFVHFSAIQDEGFKSLSEGQNVTFDIV--DGNRG 56

Query: 65 YSAENL 70
            A N+
Sbjct: 57 PQAANV 62


>gi|284990904|ref|YP_003409458.1| cold-shock DNA-binding domain-containing protein
          [Geodermatophilus obscurus DSM 43160]
 gi|284064149|gb|ADB75087.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
          DSM 43160]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  +G    G DVF H SA++ +G  +L E Q V +D  Q     
Sbjct: 3  QGTVKWFNAEKGFGFIEQDG---GGPDVFCHFSAISGSGYRSLDEAQRVEFDVTQGQKGP 59

Query: 64 KYSAENLKLV 73
          +  AEN++ +
Sbjct: 60 Q--AENVRAI 67


>gi|218778358|ref|YP_002429676.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218759742|gb|ACL02208.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI      E G DVF+H SA++ +G   L EG  V++D V+    G 
Sbjct: 4  GTVKWFNDSKGYGFI----EREEGGDVFVHYSAISGSGFKTLAEGDRVSFD-VEEGQKGP 58

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 59 AAANVIKL 66


>gi|291246380|ref|YP_003505766.1| putative cold-shock protein C [Staphylococcus simulans bv.
          staphylolyticus]
 gi|290463911|gb|ADD24898.1| putative cold-shock protein C [Staphylococcus simulans bv.
          staphylolyticus]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ G++KW+N +KG+GFI      E+G+DVF+H S +A  G  +L EGQ V +D +  D
Sbjct: 1  MNNGTVKWFNSEKGFGFI----ERENGNDVFVHFSGIAGEGYKSLEEGQNVDFDIIDGD 55


>gi|91228780|ref|ZP_01262689.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
 gi|254228854|ref|ZP_04922276.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25]
 gi|262396796|ref|YP_003288649.1| cold shock transcriptional regulator CspA [Vibrio sp. Ex25]
 gi|269966724|ref|ZP_06180801.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          40B]
 gi|91187655|gb|EAS73978.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
 gi|151938531|gb|EDN57367.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25]
 gi|262340390|gb|ACY54184.1| cold shock transcriptional regulator CspA [Vibrio sp. Ex25]
 gi|269828647|gb|EEZ82904.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          40B]
          Length = 70

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFI+ +     GDDVF+H  ++ S G   LTEGQ V++  V+    G 
Sbjct: 7  GSVKWFNETKGFGFISQD---NGGDDVFVHFRSIVSEGFKTLTEGQKVSF-VVEQGNKGL 62

Query: 65 YSAE 68
           +AE
Sbjct: 63 QAAE 66


>gi|307824911|ref|ZP_07655133.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307733958|gb|EFO04813.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI P    + G+DVF+H S +   G   LTEG  VT+D
Sbjct: 4  GTVKWFNNTKGFGFIAP---ADGGEDVFVHHSVIQGEGFKTLTEGDTVTFD 51


>gi|304413830|ref|ZP_07395247.1| Cold shock protein [Candidatus Regiella insecticola LSR1]
 gi|304283550|gb|EFL91945.1| Cold shock protein [Candidatus Regiella insecticola LSR1]
          Length = 88

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +GS+KW+N  KG+GFITP+  ++   DVF+H SA+   G   L EGQ V +D
Sbjct: 24 KGSVKWFNEAKGFGFITPDDKSK---DVFVHFSAIQGDGFKTLGEGQQVEFD 72


>gi|269104191|ref|ZP_06156887.1| putative Cold shock-like protein [Photobacterium damselae subsp.
          damselae CIP 102761]
 gi|268160831|gb|EEZ39328.1| putative Cold shock-like protein [Photobacterium damselae subsp.
          damselae CIP 102761]
          Length = 69

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ VT+D  Q
Sbjct: 6  GTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVTFDIEQ 56


>gi|239926846|ref|ZP_04683799.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291435186|ref|ZP_06574576.1| cold shock protein scoF [Streptomyces ghanaensis ATCC 14672]
 gi|291338081|gb|EFE65037.1| cold shock protein scoF [Streptomyces ghanaensis ATCC 14672]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S + ++G   L EGQ VT+D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSNINASGFRELQEGQAVTFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|42780794|ref|NP_978041.1| cold shock protein CspB [Bacillus cereus ATCC 10987]
 gi|47566079|ref|ZP_00237117.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|52143761|ref|YP_083069.1| cold shock protein [Bacillus cereus E33L]
 gi|206974820|ref|ZP_03235735.1| cold shock protein CspB [Bacillus cereus H3081.97]
 gi|217959179|ref|YP_002337727.1| cold shock protein CspB [Bacillus cereus AH187]
 gi|222095321|ref|YP_002529381.1| cold shock protein [Bacillus cereus Q1]
 gi|228984782|ref|ZP_04144954.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229090659|ref|ZP_04221892.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42]
 gi|229138395|ref|ZP_04266986.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26]
 gi|229155270|ref|ZP_04283381.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342]
 gi|229195910|ref|ZP_04322664.1| Cold shock-like protein cspB [Bacillus cereus m1293]
 gi|300117378|ref|ZP_07055168.1| cold shock protein CspB [Bacillus cereus SJ1]
 gi|42736714|gb|AAS40649.1| cold shock protein CspB [Bacillus cereus ATCC 10987]
 gi|47556996|gb|EAL15326.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|51977230|gb|AAU18780.1| cold shock protein [Bacillus cereus E33L]
 gi|206746839|gb|EDZ58231.1| cold shock protein CspB [Bacillus cereus H3081.97]
 gi|217064802|gb|ACJ79052.1| cold shock protein CspB [Bacillus cereus AH187]
 gi|221239379|gb|ACM12089.1| cold shock protein [Bacillus cereus Q1]
 gi|228587552|gb|EEK45616.1| Cold shock-like protein cspB [Bacillus cereus m1293]
 gi|228628195|gb|EEK84911.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342]
 gi|228645066|gb|EEL01307.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26]
 gi|228692601|gb|EEL46327.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42]
 gi|228774980|gb|EEM23374.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|298725213|gb|EFI65865.1| cold shock protein CspB [Bacillus cereus SJ1]
 gi|324325719|gb|ADY20979.1| cold shock protein CspB [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 65

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG+    DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIEIEGA----DDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|225871753|ref|YP_002753207.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793287|gb|ACO33377.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 47/70 (67%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GF+    S  +G+DVF+H SA+ S G  +L EGQ V ++ V+  A
Sbjct: 1  MEQGTVKWFNDAKGFGFL----SRPNGEDVFVHFSAITSNGFRSLQEGQAVQFNVVKG-A 55

Query: 62 NGKYSAENLK 71
           G + AEN++
Sbjct: 56 KG-WQAENVQ 64


>gi|157372097|ref|YP_001480086.1| cold-shock DNA-binding domain-containing protein [Serratia
          proteamaculans 568]
 gi|157323861|gb|ABV42958.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
          Length = 70

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ S+    L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFNADKGFGFITPQDGSK---DVFVHFSAIQSSDFKTLDEGQKVEFS-IENGAKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 SAVNVIAL 70


>gi|257469649|ref|ZP_05633741.1| cold-shock domain-contain protein [Fusobacterium ulcerans ATCC
          49185]
 gi|317063885|ref|ZP_07928370.1| cold-shock DNA-binding domain-containing protein [Fusobacterium
          ulcerans ATCC 49185]
 gi|313689561|gb|EFS26396.1| cold-shock DNA-binding domain-containing protein [Fusobacterium
          ulcerans ATCC 49185]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N DKG+GFI    S E G+D F+H S + S G  +L EGQ VT++  + +
Sbjct: 3  KGTVKWFNKDKGFGFI----SGEDGNDYFVHYSNINSKGFRSLEEGQAVTFEVTEGN 55


>gi|217970098|ref|YP_002355332.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
 gi|217507425|gb|ACK54436.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
          Length = 69

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
             G++KW+N  KG+GFITPEG    GDD+F H S + S G  +L E Q V ++
Sbjct: 3  TQTGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIQSKGFKSLAENQRVEFE 53


>gi|91200723|emb|CAJ73775.1| strongly similar to cold shock protein CspB [Candidatus Kuenenia
          stuttgartiensis]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI    S E+G DVF+H++++ S G   L EG  V +D + +D  G+
Sbjct: 4  GTVKWFNDSKGFGFI----SQENGTDVFVHQTSIKSEGFRTLAEGDKVEFDVI-SDQKGQ 58

Query: 65 YSAENLKL 72
           +   +K+
Sbjct: 59 KATNVVKV 66


>gi|29830990|ref|NP_825624.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29608104|dbj|BAC72159.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ V +D  Q    G+
Sbjct: 4  GTVKWFNAEKGFGFIEQDGG---GADVFAHYSNIATSGFRELQEGQKVNFDVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 57 KGPQAENIVP 66


>gi|317492161|ref|ZP_07950591.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919866|gb|EFV41195.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 69

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP    +   DVF+H SA+ S G   L EGQ V +  +Q+   G 
Sbjct: 6  GHVKWFNESKGFGFITP---ADGSKDVFVHFSAIKSDGFKTLAEGQQVEF-AIQDSPRGP 61

Query: 65 YSAENLKL 72
           +A+ + L
Sbjct: 62 SAADVIAL 69


>gi|168031977|ref|XP_001768496.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680209|gb|EDQ66647.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 178

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   + G+D+F+H++++ + G  +L EG++V +  V++  +G+
Sbjct: 5  GKVKWFNSSKGFGFITPD---KGGEDLFVHQTSIHAEGFRSLREGEVVEFQ-VESSEDGR 60

Query: 65 YSA 67
            A
Sbjct: 61 TKA 63


>gi|260549563|ref|ZP_05823781.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          sp. RUH2624]
 gi|260407356|gb|EEX00831.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          sp. RUH2624]
          Length = 70

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 8/71 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      +SG DVF H   +AS+G   L EGQ VT++ VQ    G+
Sbjct: 8  GTVKWFNETKGFGFI----QQDSGPDVFAHFKEIASSGFKTLHEGQRVTFNVVQ----GQ 59

Query: 65 YSAENLKLVPK 75
                 ++P+
Sbjct: 60 KGPSATNIIPQ 70


>gi|149185796|ref|ZP_01864111.1| Cold shock protein [Erythrobacter sp. SD-21]
 gi|148830357|gb|EDL48793.1| Cold shock protein [Erythrobacter sp. SD-21]
          Length = 69

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKGYGFI P+   +   D F+H SAV +AG+  L + Q + Y+ V+   NGK
Sbjct: 4  GTVKFFNGDKGYGFIQPD---DGSADSFVHISAVQAAGMTTLDKDQRLNYE-VETGRNGK 59

Query: 65 YSAENL 70
           SA NL
Sbjct: 60 ASAVNL 65


>gi|269127093|ref|YP_003300463.1| cold-shock DNA-binding domain-containing protein [Thermomonospora
          curvata DSM 43183]
 gi|268312051|gb|ACY98425.1| cold-shock DNA-binding domain protein [Thermomonospora curvata
          DSM 43183]
          Length = 68

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M  +G++KW+N +KGYGFI  +G    G DVF+H SA+ S+G   L E Q V ++  Q
Sbjct: 1  MPQQGTVKWFNAEKGYGFIAVDG---DGPDVFVHYSAIQSSGYRTLDENQRVEFEVTQ 55


>gi|223982871|ref|ZP_03633090.1| hypothetical protein HOLDEFILI_00364 [Holdemania filiformis DSM
          12042]
 gi|223965156|gb|EEF69449.1| hypothetical protein HOLDEFILI_00364 [Holdemania filiformis DSM
          12042]
          Length = 69

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KGYGFI+ +       D+F+H S +  +G  +L EGQ V+YD   ++ 
Sbjct: 1  MNTGKVKWFNAEKGYGFISDDNGQ---GDIFVHFSGINGSGYKSLEEGQKVSYDVENDER 57

Query: 62 NGKYSAENLKLV 73
          +GK  A N+ ++
Sbjct: 58 SGKTRAVNVTVL 69


>gi|213423037|ref|ZP_03356055.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
          Length = 55

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++
Sbjct: 3  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE 51


>gi|157692698|ref|YP_001487160.1| cold shock protein [Bacillus pumilus SAFR-032]
 gi|194016855|ref|ZP_03055468.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|157681456|gb|ABV62600.1| cold shock protein [Bacillus pumilus SAFR-032]
 gi|194011461|gb|EDW21030.1| conserved domain protein [Bacillus pumilus ATCC 7061]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G +KW+N +KG+GFI  EG    GDDVF+H +A+   G  +L EGQ V+++ V+
Sbjct: 1  MQNGKVKWFNNEKGFGFIEVEG----GDDVFVHFTAIEGDGYKSLEEGQEVSFEIVE 53


>gi|16079252|ref|NP_390076.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310107|ref|ZP_03591954.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314429|ref|ZP_03596234.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. NCIB
          3610]
 gi|221319351|ref|ZP_03600645.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323627|ref|ZP_03604921.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321311659|ref|YP_004203946.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus subtilis BSn5]
 gi|1706171|sp|P51777|CSPD_BACSU RecName: Full=Cold shock protein CspD
 gi|1256629|gb|AAA96623.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634613|emb|CAB14111.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484613|dbj|BAI85688.1| cold-shock protein [Bacillus subtilis subsp. natto BEST195]
 gi|320017933|gb|ADV92919.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus subtilis BSn5]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G +KW+N +KG+GFI  EG    GDDVF+H +A+   G  +L EGQ V+++ V+
Sbjct: 1  MQNGKVKWFNNEKGFGFIEVEG----GDDVFVHFTAIEGDGYKSLEEGQEVSFEIVE 53


>gi|310659567|ref|YP_003937288.1| DNA-binding transcriptional repressor [Clostridium sticklandii
          DSM 519]
 gi|308826345|emb|CBH22383.1| DNA-binding transcriptional repressor [Clostridium sticklandii]
          Length = 65

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N +KG+GFI      E GDDVF+H SA+   G   L EGQ V ++  Q +
Sbjct: 3  GKVKWFNAEKGFGFI----EREDGDDVFVHFSAIQGDGFKTLEEGQTVEFEITQGN 54


>gi|330807764|ref|YP_004352226.1| transcription factor, Csd family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327375872|gb|AEA67222.1| putative Transcription factor, Csd family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 69

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          GS+KW+N  KGYGFI  EG    G DVF+H  A+   G  +LTEGQ V Y  V+ 
Sbjct: 7  GSVKWFNDAKGYGFIQREG----GADVFVHYRAIRGEGHRSLTEGQQVEYAVVEG 57


>gi|254820163|ref|ZP_05225164.1| hypothetical protein MintA_09561 [Mycobacterium intracellulare
          ATCC 13950]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N DKG+GFI P+G  +   DVF+H S +  +G  +L E Q V ++  Q
Sbjct: 3  QGTVKWFNSDKGFGFIAPDGGEK---DVFVHHSEIQESGFRSLEENQRVQFEITQ 54


>gi|310658174|ref|YP_003935895.1| major cold shock protein [Clostridium sticklandii DSM 519]
 gi|308824952|emb|CBH20990.1| major cold shock protein [Clostridium sticklandii]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N +KG+GFI+ EG      DVF+H SA+ S G  +L EGQ V ++ V  D
Sbjct: 4  GIVKWFNAEKGFGFISVEGEK----DVFVHFSAIQSEGYRSLEEGQEVQFEIVDGD 55


>gi|299065937|emb|CBJ37118.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum
          CMR15]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G++KW+N  KG+GFI+P+   E G+++F H SA+   G   L EGQ V +D  Q+
Sbjct: 4  GTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQS 55


>gi|283856223|ref|YP_162014.2| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775218|gb|AAV88903.2| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 258

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +K++N  KG+GF+  +   + G+DVF+H SAV  AGL  L EGQ +++  V  D  G+
Sbjct: 93  GVVKFFNSQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGGR 147

Query: 65  YSAENLKL 72
            SA NL +
Sbjct: 148 VSATNLGI 155



 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 4/66 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AGL +L EG  ++++ ++ D  GK
Sbjct: 192 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGLPSLNEGDRLSFE-LEVDRRGK 247

Query: 65  YSAENL 70
           Y+A NL
Sbjct: 248 YAAVNL 253


>gi|241760852|ref|ZP_04758941.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374471|gb|EER63932.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 257

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +K++N  KG+GF+  +   + G+DVF+H SAV  AGL  L EGQ +++  V  D  G+
Sbjct: 92  GVVKFFNSQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGGR 146

Query: 65  YSAENLKL 72
            SA NL +
Sbjct: 147 VSATNLGI 154



 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 4/66 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AGL +L EG  ++++ ++ D  GK
Sbjct: 191 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGLPSLNEGDRLSFE-LEVDRRGK 246

Query: 65  YSAENL 70
           Y+A NL
Sbjct: 247 YAAVNL 252


>gi|153005354|ref|YP_001379679.1| cold-shock DNA-binding domain-containing protein
          [Anaeromyxobacter sp. Fw109-5]
 gi|152028927|gb|ABS26695.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
          sp. Fw109-5]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N  KG+GFI  +G    G+DVF H +A+ S G   L EGQ V ++  Q
Sbjct: 4  GSVKWFNDAKGFGFIQQDG---GGEDVFCHHTAIQSQGFRTLQEGQRVEFEVKQ 54


>gi|119898894|ref|YP_934107.1| cold shock-like protein [Azoarcus sp. BH72]
 gi|119671307|emb|CAL95220.1| cold shock-like protein [Azoarcus sp. BH72]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITPE     G+D+F H SA+  +G  +L EGQ V ++  +
Sbjct: 4  GTVKWFNDAKGFGFITPE---NGGEDLFAHFSAIQGSGFKSLAEGQRVEFEITR 54


>gi|218767948|ref|YP_002342460.1| putative transcriptional regulator [Neisseria meningitidis Z2491]
 gi|241758498|ref|ZP_04756617.1| cold-shock DNA-binding domain protein [Neisseria flavescens
          SK114]
 gi|121051956|emb|CAM08264.1| putative transcriptional regulator [Neisseria meningitidis Z2491]
 gi|241321333|gb|EER57481.1| cold-shock DNA-binding domain protein [Neisseria flavescens
          SK114]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D V     GK
Sbjct: 4  GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMDGFKTLKEGQRVSFD-VTTGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|260777147|ref|ZP_05886041.1| cold shock protein CspE [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606813|gb|EEX33087.1| cold shock protein CspE [Vibrio coralliilyticus ATCC BAA-450]
          Length = 69

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V +   Q     +
Sbjct: 7  GTVKWFNETKGFGFI----QQENGPDVFAHFSAITGDGFRTLVEGQKVEFTVSQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AEN+KLV
Sbjct: 63 --AENIKLV 69


>gi|257453190|ref|ZP_05618489.1| cold shock protein [Fusobacterium sp. 3_1_5R]
 gi|257467346|ref|ZP_05631657.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918476|ref|ZP_07914716.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059724|ref|ZP_07924209.1| cold shock protein [Fusobacterium sp. 3_1_5R]
 gi|313685400|gb|EFS22235.1| cold shock protein [Fusobacterium sp. 3_1_5R]
 gi|313692351|gb|EFS29186.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 66

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ VT+D  +
Sbjct: 2  KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVTFDITE 52


>gi|110634484|ref|YP_674692.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
          BNC1]
 gi|110285468|gb|ABG63527.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
          Length = 70

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N  KG+GFITP+   +   DVF+H SAV ++GL  L +GQ VT+D  + D
Sbjct: 1  MPQSGTVKFFNHAKGFGFITPDDGQK---DVFVHISAVQASGLPGLEDGQKVTFD-TEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KRGK 60


>gi|37527652|ref|NP_930996.1| cold shock-like protein (CPS-I) [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36787087|emb|CAE16162.1| cold shock-like protein (CPS-I) [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 71

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          GS+KW+N DKG+GFI+P+  ++   DVF+H SA+ S     L EGQ V++  ++N A G
Sbjct: 7  GSVKWFNNDKGFGFISPKDGSK---DVFVHYSAIQSNNFKTLEEGQEVSFS-IENGAKG 61


>gi|311742699|ref|ZP_07716508.1| CspA family cold shock transcriptional regulator [Aeromicrobium
          marinum DSM 15272]
 gi|311314327|gb|EFQ84235.1| CspA family cold shock transcriptional regulator [Aeromicrobium
          marinum DSM 15272]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N DKG+GFI P+  +E   DVF H +A+ S+G  +L E Q V +D  Q
Sbjct: 4  GTVKWFNADKGFGFIAPDDGSE---DVFAHFTAIQSSGYRSLNENQKVEFDVEQ 54


>gi|296283311|ref|ZP_06861309.1| cold shock protein [Citromicrobium bathyomarinum JL354]
          Length = 70

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G++K++N DKG+GFI P +GS +S    F+H +AV +AG+  L + Q + Y+ V+ 
Sbjct: 1  MAKTGTVKFFNSDKGFGFIQPDDGSADS----FVHITAVQAAGMQGLDKDQRLNYE-VEQ 55

Query: 60 DANGKYSAENL 70
            NGK SA NL
Sbjct: 56 GRNGKESAVNL 66


>gi|218676106|ref|YP_002394925.1| cold shock protein [Vibrio splendidus LGP32]
 gi|218324374|emb|CAV25748.1| cold shock protein [Vibrio splendidus LGP32]
          Length = 76

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI+ +     G DVF+H  A+AS G   L EGQ V+++ V+N   G 
Sbjct: 13 GTVKWFNEEKGFGFISQD---NGGADVFVHFRAIASEGFKTLKEGQKVSFE-VENGQKGL 68

Query: 65 YSA 67
           +A
Sbjct: 69 QAA 71


>gi|192359729|ref|YP_001980822.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107]
 gi|190685894|gb|ACE83572.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107]
          Length = 75

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKGYGFI  EG    G DVF+H  A+   G   L EGQ VT++  Q
Sbjct: 13 GVVKWFNDDKGYGFIEREG----GADVFVHFRAINGTGRRTLKEGQKVTFEVTQ 62


>gi|119962819|ref|YP_946960.1| cold shock protein [Arthrobacter aurescens TC1]
 gi|119949678|gb|ABM08589.1| putative cold shock protein [Arthrobacter aurescens TC1]
          Length = 67

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI+PE  ++   DVF H SA+ S+G  +L E Q V++D  Q
Sbjct: 4  GTVKWFNSEKGFGFISPEDGSQ---DVFAHYSAINSSGYRSLEENQKVSFDVEQ 54


>gi|331005484|ref|ZP_08328862.1| cold-shock DNA-binding domain protein [gamma proteobacterium
          IMCC1989]
 gi|330420676|gb|EGG94964.1| cold-shock DNA-binding domain protein [gamma proteobacterium
          IMCC1989]
          Length = 68

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58
          +G++KW+N DKG+GFITPE   + G D+F+H S + S G +  L +GQ V ++  Q
Sbjct: 3  KGTVKWFNADKGFGFITPE---DGGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQ 55


>gi|326502466|dbj|BAJ95296.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326507234|dbj|BAJ95694.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 264

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 40/57 (70%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N  KG+GFI+P+  +E   D+F+H+S++ + G  +L EG++V +   + D
Sbjct: 8  KGTVKWFNDTKGFGFISPDDGSE---DLFVHQSSIKADGFRSLAEGEVVEFSVSEGD 61


>gi|169827740|ref|YP_001697898.1| cold shock protein [Lysinibacillus sphaericus C3-41]
 gi|168992228|gb|ACA39768.1| Cold shock protein [Lysinibacillus sphaericus C3-41]
          Length = 68

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ +G +KW+N +KGYGFI      + G+DVF+H + +   G   L EGQ V++D V+
Sbjct: 2  LMQQGIVKWFNNEKGYGFI----ECDDGEDVFVHFTGIQEEGFRTLEEGQKVSFDVVE 55


>gi|91793637|ref|YP_563288.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217]
 gi|91715639|gb|ABE55565.1| cold-shock DNA-binding protein family [Shewanella denitrificans
          OS217]
          Length = 69

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI      ESG DVF+H  A+ S G   L EGQ V++   Q     +
Sbjct: 6  GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+ +V
Sbjct: 62 --AENVSVV 68


>gi|294630457|ref|ZP_06709017.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292833790|gb|EFF92139.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 67

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D  Q      
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIATQGFRELLEGQKVTFDIGQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|257462895|ref|ZP_05627301.1| cold shock protein [Fusobacterium sp. D12]
 gi|317060519|ref|ZP_07925004.1| cold shock protein [Fusobacterium sp. D12]
 gi|313686195|gb|EFS23030.1| cold shock protein [Fusobacterium sp. D12]
          Length = 66

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ VT+D  +
Sbjct: 2  KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVTFDITE 52


>gi|322417715|ref|YP_004196938.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
          M18]
 gi|320124102|gb|ADW11662.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
          Length = 66

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N  KG+GFI      E+G+DVF+H SA+ S G  +L EG  VT+D  Q
Sbjct: 3  KGVVKWFNDSKGFGFI----EQENGEDVFVHFSAIQSDGFKSLAEGDSVTFDVQQ 53


>gi|153005392|ref|YP_001379717.1| cold-shock DNA-binding domain-containing protein
          [Anaeromyxobacter sp. Fw109-5]
 gi|152028965|gb|ABS26733.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
          sp. Fw109-5]
          Length = 65

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+ EG    G+DVF+H +A+   G   L EG+ V +D  Q
Sbjct: 4  GTVKWFNDAKGFGFISQEG----GEDVFVHHTAIQMDGFRTLKEGERVEFDVTQ 53


>gi|115379755|ref|ZP_01466829.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115363242|gb|EAU62403.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 85

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT +G    G+DVF H +A+ + G  +LTEGQ V ++  +      
Sbjct: 22 GVVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQADGFRSLTEGQRVEFEVSRGPKG-- 76

Query: 65 YSAENLKLV 73
            A+N+K +
Sbjct: 77 LQAQNVKPI 85


>gi|119776095|ref|YP_928835.1| cold-shock DNA-binding domain-containing protein [Shewanella
          amazonensis SB2B]
 gi|119768595|gb|ABM01166.1| cold-shock DNA-binding protein family [Shewanella amazonensis
          SB2B]
          Length = 70

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFITP+     G DVF+H  A+A  G   L EGQ V ++  Q   N  
Sbjct: 7  GSVKWFNETKGFGFITPD---NGGADVFVHFRAIAVDGFKTLAEGQQVQFNVEQ--GNKG 61

Query: 65 YSAENLKLV 73
            A N+ L+
Sbjct: 62 PQAANVTLL 70


>gi|329936006|ref|ZP_08285806.1| cold shock protein [Streptomyces griseoaurantiacus M045]
 gi|329304484|gb|EGG48362.1| cold shock protein [Streptomyces griseoaurantiacus M045]
          Length = 67

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q V++D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVSFDVTQ 54


>gi|262273606|ref|ZP_06051420.1| cold shock protein CspA [Grimontia hollisae CIP 101886]
 gi|262273607|ref|ZP_06051421.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
 gi|262222584|gb|EEY73895.1| cold shock protein CspA [Grimontia hollisae CIP 101886]
 gi|262222585|gb|EEY73896.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
          Length = 70

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V++D  Q
Sbjct: 7  GLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASDGFKTLAEGQKVSFDVEQ 57


>gi|167758030|ref|ZP_02430157.1| hypothetical protein CLOSCI_00368 [Clostridium scindens ATCC
          35704]
 gi|167663927|gb|EDS08057.1| hypothetical protein CLOSCI_00368 [Clostridium scindens ATCC
          35704]
          Length = 80

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +V +G++KW+N  KGYGFI    S E+G+DVF+H S +   G  +L EGQ V YD
Sbjct: 14 IVMKGTVKWFNNQKGYGFI----SDEAGNDVFVHYSGLNMDGFKSLEEGQEVEYD 64


>gi|15896242|ref|NP_349591.1| cold shock protein [Clostridium acetobutylicum ATCC 824]
 gi|15026046|gb|AAK80931.1|AE007796_1 Cold shock protein [Clostridium acetobutylicum ATCC 824]
 gi|325510397|gb|ADZ22033.1| Cold shock protein [Clostridium acetobutylicum EA 2018]
          Length = 65

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFIT    T+ G+DVF+H S +   G   L EGQ V +D  +
Sbjct: 3  GTVKWFNSQKGYGFIT----TQEGNDVFVHYSGIKDNGFKTLEEGQEVEFDLTE 52


>gi|119475889|ref|ZP_01616241.1| Cold shock protein [marine gamma proteobacterium HTCC2143]
 gi|119450516|gb|EAW31750.1| Cold shock protein [marine gamma proteobacterium HTCC2143]
          Length = 69

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      ESG DVF+H SA+ S+G   L EGQ V +   Q     +
Sbjct: 7  GTVKWFNESKGFGFI----EQESGPDVFVHFSAINSSGFKTLAEGQKVEFTVTQGQKGPQ 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 --AENV 66


>gi|145594319|ref|YP_001158616.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440]
 gi|159037387|ref|YP_001536640.1| cold-shock DNA-binding domain-containing protein [Salinispora
          arenicola CNS-205]
 gi|145303656|gb|ABP54238.1| cold-shock DNA-binding protein family [Salinispora tropica
          CNB-440]
 gi|157916222|gb|ABV97649.1| cold-shock DNA-binding domain protein [Salinispora arenicola
          CNS-205]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N DKG+GFIT +G    G DVF+H SA+ ++G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQTSGYRTLEENQRVEFEIAQ 54


>gi|83648221|ref|YP_436656.1| cold shock protein [Hahella chejuensis KCTC 2396]
 gi|83636264|gb|ABC32231.1| Cold shock protein [Hahella chejuensis KCTC 2396]
          Length = 69

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G++KW+N  KG+GFI      ESG DVF H SA+ S G   LTEGQ V +
Sbjct: 6  KGTVKWFNETKGFGFI----QQESGPDVFAHFSAIVSNGFKTLTEGQQVEF 52


>gi|73538776|ref|YP_299143.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72122113|gb|AAZ64299.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G++KW+N  KG+GFITP+     G+D+F H SA+  AG  +L EGQ V Y
Sbjct: 1  METGTVKWFNDAKGFGFITPDA---GGNDLFAHFSAIEGAGFKSLKEGQKVRY 50


>gi|197117779|ref|YP_002138206.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|197087139|gb|ACH38410.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+      E+GDDVF H SA+   G  +L EG  VT+D V+
Sbjct: 4  GTVKWFNDSKGFGFL----EQENGDDVFCHFSAITGEGFKSLVEGDSVTFDVVR 53


>gi|45441597|ref|NP_993136.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
 gi|51596736|ref|YP_070927.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
 gi|108807860|ref|YP_651776.1| cold shock protein [Yersinia pestis Antiqua]
 gi|108812136|ref|YP_647903.1| cold shock protein [Yersinia pestis Nepal516]
 gi|123442814|ref|YP_001008382.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|145599073|ref|YP_001163149.1| cold shock protein [Yersinia pestis Pestoides F]
 gi|149366382|ref|ZP_01888416.1| cold shock protein [Yersinia pestis CA88-4125]
 gi|165925512|ref|ZP_02221344.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165938445|ref|ZP_02227002.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|166008118|ref|ZP_02229016.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166210711|ref|ZP_02236746.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167422600|ref|ZP_02314353.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167426330|ref|ZP_02318083.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|167466596|ref|ZP_02331300.1| cold shock protein [Yersinia pestis FV-1]
 gi|170023981|ref|YP_001720486.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186895799|ref|YP_001872911.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|218928790|ref|YP_002346665.1| cold shock protein [Yersinia pestis CO92]
 gi|229841646|ref|ZP_04461804.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843763|ref|ZP_04463906.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
          195]
 gi|229894506|ref|ZP_04509688.1| cold shock protein [Yersinia pestis Pestoides A]
 gi|229902455|ref|ZP_04517574.1| cold shock protein [Yersinia pestis Nepal516]
 gi|257168075|ref|YP_003169743.1| cold shock protein [Yersinia pestis KIM 10]
 gi|270490364|ref|ZP_06207438.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|284988615|ref|YP_003422336.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
 gi|332161292|ref|YP_004297869.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|45436458|gb|AAS62013.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
 gi|51590018|emb|CAH21652.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
 gi|108775784|gb|ABG18303.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108779773|gb|ABG13831.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
 gi|115347401|emb|CAL20300.1| cold shock protein [Yersinia pestis CO92]
 gi|122089775|emb|CAL12628.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|145210769|gb|ABP40176.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|149290756|gb|EDM40831.1| cold shock protein [Yersinia pestis CA88-4125]
 gi|165913560|gb|EDR32180.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|165922621|gb|EDR39772.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165992500|gb|EDR44801.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166207891|gb|EDR52371.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166958447|gb|EDR55468.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167054685|gb|EDR64489.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|169750515|gb|ACA68033.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186698825|gb|ACC89454.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229680501|gb|EEO76598.1| cold shock protein [Yersinia pestis Nepal516]
 gi|229689371|gb|EEO81434.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
          195]
 gi|229694109|gb|EEO84157.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229703525|gb|EEO90542.1| cold shock protein [Yersinia pestis Pestoides A]
 gi|270338868|gb|EFA49645.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|318605204|emb|CBY26702.1| cold shock protein CspA [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|320014803|gb|ADV98374.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin
          35]
 gi|325665522|gb|ADZ42166.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330860359|emb|CBX70670.1| cold shock-like protein cspC [Yersinia enterocolitica W22703]
          Length = 70

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +  ++N A
Sbjct: 4  MMKGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQNVQFS-IENGA 59

Query: 62 NGKYSA 67
           G  +A
Sbjct: 60 KGPSAA 65


>gi|255318100|ref|ZP_05359344.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
 gi|262379848|ref|ZP_06073004.1| cold shock domain-containing protein CspD [Acinetobacter
          radioresistens SH164]
 gi|255304811|gb|EET83984.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
 gi|262299305|gb|EEY87218.1| cold shock domain-containing protein CspD [Acinetobacter
          radioresistens SH164]
          Length = 69

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI  E    SG DVF H S +AS+G   L EGQ V++   Q
Sbjct: 7  GTVKWFNEAKGFGFIQQE----SGSDVFAHFSEIASSGFKTLFEGQQVSFSVAQ 56


>gi|238063836|ref|ZP_04608545.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|302866724|ref|YP_003835361.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
 gi|315503139|ref|YP_004082026.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|237885647|gb|EEP74475.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|302569583|gb|ADL45785.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
          27029]
 gi|315409758|gb|ADU07875.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N DKG+GFIT +G    G DVF+H SA+ ++G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQTSGYRTLEENQRVEFEIAQ 54


>gi|195970700|gb|ACG60738.1| putative cold shock protein [Streptomyces flavoviridis]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVSFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|319786935|ref|YP_004146410.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317465447|gb|ADV27179.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 68

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+PE   +   DVF H SA+ + G  +L EGQ V+Y+  Q
Sbjct: 4  GTVKWFNDAKGFGFISPE---DGSADVFAHFSAINAKGFRSLREGQRVSYEVTQ 54


>gi|312897558|ref|ZP_07756978.1| major cold shock protein CspA [Megasphaera micronuciformis F0359]
 gi|310621410|gb|EFQ04950.1| major cold shock protein CspA [Megasphaera micronuciformis F0359]
          Length = 65

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          +G +KW++ +KGYGFI      E G DVF+H SA+   G  +LTEGQ V +D V
Sbjct: 2  QGKVKWFSAEKGYGFI----EREDGGDVFVHFSAIQEDGFKSLTEGQEVEFDIV 51


>gi|220911419|ref|YP_002486728.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|325961974|ref|YP_004239880.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|219858297|gb|ACL38639.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|323468061|gb|ADX71746.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI P+  +    DVF H SA+AS+G  +L E Q V +D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAPDDGSA---DVFAHYSAIASSGYRSLDENQKVEFDVTQGPKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENIR 65


>gi|308067105|ref|YP_003868710.1| Cold shock-like protein cspLB (CspB) [Paenibacillus polymyxa
          E681]
 gi|305856384|gb|ADM68172.1| Cold shock-like protein cspLB (CspB) [Paenibacillus polymyxa
          E681]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF+H SA+   G  +L EGQ V ++ V  + 
Sbjct: 1  MQTGTVKWFNAEKGFGFIEVEG----GSDVFVHFSAIQGDGFKSLDEGQRVEFNVV--EG 54

Query: 62 NGKYSAENL 70
          N    AEN+
Sbjct: 55 NRGPQAENV 63


>gi|291326366|ref|ZP_06124240.2| conserved domain protein [Providencia rettgeri DSM 1131]
 gi|291314630|gb|EFE55083.1| conserved domain protein [Providencia rettgeri DSM 1131]
          Length = 77

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +  ++N A G
Sbjct: 13 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQQVEFT-IENGAKG 68

Query: 64 KYSA 67
            +A
Sbjct: 69 PAAA 72


>gi|21231725|ref|NP_637642.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66768149|ref|YP_242911.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|188991286|ref|YP_001903296.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          B100]
 gi|21113428|gb|AAM41566.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66573481|gb|AAY48891.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|167733046|emb|CAP51244.1| cold shock protein [Xanthomonas campestris pv. campestris]
          Length = 69

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFITP    ESG D+F+H  A+   G  +L EGQ V++  VQ
Sbjct: 7  GVVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVSFVAVQ 56


>gi|113970957|ref|YP_734750.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-4]
 gi|114048181|ref|YP_738731.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-7]
 gi|113885641|gb|ABI39693.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4]
 gi|113889623|gb|ABI43674.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7]
          Length = 69

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFI+P+     G D F+H  A+ S G   L EGQ V+Y+  Q
Sbjct: 6  GIVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSEGFKTLAEGQKVSYEVEQ 56


>gi|326330338|ref|ZP_08196648.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325951875|gb|EGD43905.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N DKG+GFI  +     GDDVF+H SA+ + G   L E Q V +D  Q     
Sbjct: 3  QGTVKWFNGDKGFGFIAQD---NGGDDVFVHFSAIQTQGYKTLDENQRVEFDVTQGPKGP 59

Query: 64 KYSAENLKLV 73
          +  AEN++ V
Sbjct: 60 Q--AENVRPV 67


>gi|319778247|ref|YP_004129160.1| cold-shock DNA-binding domain protein [Taylorella equigenitalis
          MCE9]
 gi|317108271|gb|ADU91017.1| cold-shock DNA-binding domain protein [Taylorella equigenitalis
          MCE9]
          Length = 76

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+TPEGS E   D+F+H S++   G   L E Q ++++  +
Sbjct: 13 GTVKWFNDTKGFGFVTPEGSNE---DLFIHFSSIQMEGFKTLKENQKISFEITE 63


>gi|299534886|ref|ZP_07048215.1| cold shock protein [Lysinibacillus fusiformis ZC1]
 gi|298729731|gb|EFI70277.1| cold shock protein [Lysinibacillus fusiformis ZC1]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  EG    G DVF H SA+   G  +L EGQ V +  V+    G
Sbjct: 3  QGTVKWFNAEKGFGFIEVEG----GQDVFAHFSAIQGEGFKSLEEGQKVEFT-VEEGQRG 57

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 58 PQAANIVKL 66


>gi|260769345|ref|ZP_05878278.1| cold shock protein CspA [Vibrio furnissii CIP 102972]
 gi|260614683|gb|EEX39869.1| cold shock protein CspA [Vibrio furnissii CIP 102972]
 gi|315181877|gb|ADT88790.1| cold-shock DNA-binding domain protein [Vibrio furnissii NCTC
          11218]
          Length = 70

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFITP+     G D+F+H  ++AS G   L EGQ V+++  Q +
Sbjct: 7  GTVKWFNETKGFGFITPD---NGGADLFVHFRSIASEGFKTLAEGQKVSFNVEQGN 59


>gi|27550093|gb|AAO18076.1| unknown [Photorhabdus luminescens]
          Length = 71

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          GS+KW+N DKG+GFI+P+  ++   DVF+H SA+ S     L EGQ V++  ++N A G
Sbjct: 7  GSVKWFNNDKGFGFISPKDGSK---DVFVHYSAIQSNNFKTLEEGQEVSFS-IENGAKG 61


>gi|149190926|ref|ZP_01869189.1| putative Cold shock-like protein [Vibrio shilonii AK1]
 gi|148835281|gb|EDL52255.1| putative Cold shock-like protein [Vibrio shilonii AK1]
          Length = 70

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GF+  E     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 7  GTVKWFNEEKGFGFLAQE---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 57


>gi|115375364|ref|ZP_01462627.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310819145|ref|YP_003951503.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1]
 gi|115367648|gb|EAU66620.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392217|gb|ADO69676.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFIT +G    G+D+F H +A+ + G  +L EGQ V +D  +      
Sbjct: 4  GTVKWFNDAKGFGFITQDG---GGEDLFCHHTAIQTQGFRSLQEGQKVEFDVARGPKG-- 58

Query: 65 YSAENLKLV 73
            A+N++ V
Sbjct: 59 LQAQNVRPV 67


>gi|303233532|ref|ZP_07320194.1| cold shock protein CspA [Finegoldia magna BVS033A4]
 gi|302495370|gb|EFL55114.1| cold shock protein CspA [Finegoldia magna BVS033A4]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFIT E +     D+F+H+SA+   G   L EGQ V+YD   +D
Sbjct: 4  GTVKWFNSTKGFGFITGEDNK----DIFVHQSAIQEDGFRTLEEGQKVSYDVEASD 55


>gi|229528227|ref|ZP_04417618.1| cold-shock protein DNA-binding [Vibrio cholerae 12129(1)]
 gi|229334589|gb|EEO00075.1| cold-shock protein DNA-binding [Vibrio cholerae 12129(1)]
          Length = 72

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFITP+     G DVF+H +++ S G+  L EGQ V +   Q    G 
Sbjct: 9  GSVKWFNESKGFGFITPD---SGGSDVFVHFNSITSGGVKTLFEGQKVNFSIEQ----GS 61

Query: 65 YSAENLKLVP 74
             + + ++P
Sbjct: 62 KGLQAVNVIP 71


>gi|239930668|ref|ZP_04687621.1| cold-shock domain-containing protein [Streptomyces ghanaensis
          ATCC 14672]
 gi|291439030|ref|ZP_06578420.1| cold-shock domain-containing protein [Streptomyces ghanaensis
          ATCC 14672]
 gi|291341925|gb|EFE68881.1| cold-shock domain-containing protein [Streptomyces ghanaensis
          ATCC 14672]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVSFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|17547185|ref|NP_520587.1| cold shock-like transcription regulator protein [Ralstonia
          solanacearum GMI1000]
 gi|17429487|emb|CAD16173.1| probable cold shock-like cspd transcription regulator protein
          [Ralstonia solanacearum GMI1000]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+P+   E G+++F H SA+   G   L EGQ V +D  Q
Sbjct: 4  GTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQ 54


>gi|120599254|ref|YP_963828.1| cold-shock DNA-binding domain-containing protein [Shewanella sp.
          W3-18-1]
 gi|146292672|ref|YP_001183096.1| cold-shock DNA-binding domain-containing protein [Shewanella
          putrefaciens CN-32]
 gi|120559347|gb|ABM25274.1| cold-shock DNA-binding protein family [Shewanella sp. W3-18-1]
 gi|145564362|gb|ABP75297.1| cold-shock DNA-binding protein family [Shewanella putrefaciens
          CN-32]
 gi|319425976|gb|ADV54050.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens
          200]
          Length = 69

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI      ESG DVF+H  A+ S G   L EGQ V++   Q     +
Sbjct: 6  GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 62 --AENVTII 68


>gi|297195982|ref|ZP_06913380.1| cold shock protein 1 [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718880|gb|EDY62788.1| cold shock protein 1 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q V +D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVEFDITQGPKGPQ 60

Query: 65 YSAENLKLV 73
            AEN++ V
Sbjct: 61 --AENVRPV 67


>gi|56696164|ref|YP_166520.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
 gi|56677901|gb|AAV94567.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
          Length = 68

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   + G DVF+H SAV  +GL  L + Q V+++ +    +G+
Sbjct: 4  GTVKWFNATKGYGFIAPD---DGGKDVFVHISAVERSGLTGLADNQKVSFEMLDG-RDGR 59

Query: 65 YSAENLK 71
            A ++K
Sbjct: 60 KMAGDIK 66


>gi|84387543|ref|ZP_00990561.1| putative Cold shock-like protein [Vibrio splendidus 12B01]
 gi|86144453|ref|ZP_01062785.1| putative Cold shock-like protein [Vibrio sp. MED222]
 gi|84377591|gb|EAP94456.1| putative Cold shock-like protein [Vibrio splendidus 12B01]
 gi|85837352|gb|EAQ55464.1| putative Cold shock-like protein [Vibrio sp. MED222]
          Length = 70

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI+ +     G DVF+H  A+AS G   L EGQ V+++ V+N   G 
Sbjct: 7  GTVKWFNEEKGFGFISQD---NGGADVFVHFRAIASEGFKTLKEGQKVSFE-VENGQKGL 62

Query: 65 YSA 67
           +A
Sbjct: 63 QAA 65


>gi|332308080|ref|YP_004435931.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|332175409|gb|AEE24663.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 68

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59
          +G++KW+N DKG+GFITPE   + G D+F+H S + S G +  L +GQ V ++  Q+
Sbjct: 3  KGTVKWFNADKGFGFITPE---DGGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQS 56


>gi|15925694|ref|NP_373228.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|15928289|ref|NP_375822.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus
          N315]
 gi|21284352|ref|NP_647440.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus MW2]
 gi|57651099|ref|YP_187517.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus COL]
 gi|82752283|ref|YP_418024.1| cold shock protein [Staphylococcus aureus RF122]
 gi|148269136|ref|YP_001248079.1| cold-shock DNA-binding domain-containing protein [Staphylococcus
          aureus subsp. aureus JH9]
 gi|150395218|ref|YP_001317893.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus JH1]
 gi|151222817|ref|YP_001333639.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|156981019|ref|YP_001443278.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|221142463|ref|ZP_03566956.1| cold shock protein [Staphylococcus aureus subsp. aureus str.
          JKD6009]
 gi|253316706|ref|ZP_04839919.1| cold shock protein [Staphylococcus aureus subsp. aureus str.
          CF-Marseille]
 gi|255007476|ref|ZP_05146077.2| cold shock protein [Staphylococcus aureus subsp. aureus
          Mu50-omega]
 gi|269204342|ref|YP_003283611.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus ED98]
 gi|284023028|ref|ZP_06377426.1| cold shock protein [Staphylococcus aureus subsp. aureus 132]
 gi|295429287|ref|ZP_06821909.1| cold shock-like protein cspLA [Staphylococcus aureus subsp.
          aureus EMRSA16]
 gi|297589211|ref|ZP_06947852.1| cold shock protein B [Staphylococcus aureus subsp. aureus MN8]
 gi|304379938|ref|ZP_07362667.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|2226347|gb|AAB61743.1| CspB [Staphylococcus aureus RN4220]
 gi|13702661|dbj|BAB43801.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus
          N315]
 gi|14248479|dbj|BAB58866.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|21205796|dbj|BAB96488.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus MW2]
 gi|57285285|gb|AAW37379.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
          aureus COL]
 gi|82657814|emb|CAI82269.1| cold shock protein [Staphylococcus aureus RF122]
 gi|147742205|gb|ABQ50503.1| cold-shock DNA-binding protein family [Staphylococcus aureus
          subsp. aureus JH9]
 gi|149947670|gb|ABR53606.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus JH1]
 gi|150375617|dbj|BAF68877.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|156723154|dbj|BAF79571.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|262076632|gb|ACY12605.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus ED98]
 gi|269942290|emb|CBI50705.1| cold shock protein [Staphylococcus aureus subsp. aureus TW20]
 gi|283471919|emb|CAQ51130.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          ST398]
 gi|285818367|gb|ADC38854.1| Cold shock protein CspG [Staphylococcus aureus 04-02981]
 gi|295127046|gb|EFG56690.1| cold shock-like protein cspLA [Staphylococcus aureus subsp.
          aureus EMRSA16]
 gi|297577722|gb|EFH96435.1| cold shock protein B [Staphylococcus aureus subsp. aureus MN8]
 gi|298695962|gb|ADI99184.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
          aureus ED133]
 gi|302334319|gb|ADL24512.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
          subsp. aureus JKD6159]
 gi|302752582|gb|ADL66759.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
          subsp. aureus str. JKD6008]
 gi|304341518|gb|EFM07428.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|312436869|gb|ADQ75940.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH60]
 gi|312831043|emb|CBX35885.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus
          ECT-R 2]
 gi|315129533|gb|EFT85525.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195215|gb|EFU25603.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS00]
 gi|315197908|gb|EFU28241.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141408|gb|EFW33251.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
          subsp. aureus MRSA131]
 gi|320144390|gb|EFW36155.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
          subsp. aureus MRSA177]
 gi|323439708|gb|EGA97426.1| cold shock protein [Staphylococcus aureus O11]
 gi|323443281|gb|EGB00898.1| cold shock protein [Staphylococcus aureus O46]
 gi|329315425|gb|AEB89838.1| Cold shock protein [Staphylococcus aureus subsp. aureus T0131]
 gi|329725714|gb|EGG62193.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus
          21172]
 gi|329731711|gb|EGG68071.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus
          21189]
 gi|329732388|gb|EGG68738.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus
          21193]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N +KG+GFI      E+G DVF+H S +AS G   L EGQ VT++  +
Sbjct: 1  MNNGTVKWFNAEKGFGFI----EQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITE 53


>gi|294470718|gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]
          Length = 263

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G + W+N  KGYGFITP+   + G+++F+H+SA+ S G  +LT G  V +   Q   +GK
Sbjct: 13 GKVNWFNDSKGYGFITPD---DDGEELFVHQSAILSEGFRSLTVGDSVEFAVTQG-TDGK 68

Query: 65 YSAENL 70
            A N+
Sbjct: 69 TKAVNV 74


>gi|284030059|ref|YP_003379990.1| cold-shock DNA-binding domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283809352|gb|ADB31191.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM
          17836]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI+ +G    G DVF+H SA+A+ G   L E Q V +D  Q     +
Sbjct: 4  GTVKWFNGEKGFGFISQDG---GGADVFVHYSAIATDGFRTLDENQKVEFDLAQGPKGPQ 60

Query: 65 YSAENLKLV 73
            AEN++ V
Sbjct: 61 --AENVRPV 67


>gi|229029377|ref|ZP_04185462.1| Cold shock-like protein cspB [Bacillus cereus AH1271]
 gi|228731937|gb|EEL82834.1| Cold shock-like protein cspB [Bacillus cereus AH1271]
          Length = 77

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG+    DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 14 QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 68

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 69 PQAANVVKL 77


>gi|183602622|ref|ZP_02963987.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|241190696|ref|YP_002968090.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          animalis subsp. lactis Bl-04]
 gi|241196102|ref|YP_002969657.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          animalis subsp. lactis DSM 10140]
 gi|183218263|gb|EDT88909.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|240249088|gb|ACS46028.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          animalis subsp. lactis Bl-04]
 gi|240250656|gb|ACS47595.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          animalis subsp. lactis DSM 10140]
 gi|289178434|gb|ADC85680.1| Cold shock protein [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793685|gb|ADG33220.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          animalis subsp. lactis V9]
          Length = 70

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++K++N  +GYGFITPE   + G DVF+H S++ + G   L +G LV YD    D  G
Sbjct: 3  RGTVKFFNVGRGYGFITPE---DGGADVFVHYSSIEAEGFKALRQGDLVEYDSKPTD-KG 58

Query: 64 KYSAENLKL 72
          + +   +K+
Sbjct: 59 ELATRVVKI 67


>gi|169828062|ref|YP_001698220.1| cold shock protein [Lysinibacillus sphaericus C3-41]
 gi|168992550|gb|ACA40090.1| cold shock protein [Lysinibacillus sphaericus C3-41]
          Length = 71

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  EG    G DVF H SA+   G  +L EGQ V +  +++   G
Sbjct: 8  QGTVKWFNSEKGFGFIEVEG----GQDVFAHFSAIQGEGFKSLEEGQKVEFT-IEDGQRG 62

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 63 PQAANIVKL 71


>gi|319651118|ref|ZP_08005251.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
 gi|317397172|gb|EFV77877.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ G +KW+N +KG+GFI     +  G DVF+H SA+ + G   L EGQ VT++ V+ +
Sbjct: 1  MNTGKVKWFNAEKGFGFI----ESSEGQDVFVHFSAIQTEGFKTLEEGQDVTFEIVEGN 55


>gi|222149268|ref|YP_002550225.1| cold shock protein [Agrobacterium vitis S4]
 gi|221736252|gb|ACM37215.1| cold shock protein [Agrobacterium vitis S4]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N DKG+GFITPE     G DVF+H S++      +L EG  V+++  Q+   GK
Sbjct: 4  GTVKFFNDDKGFGFITPE---NGGTDVFVHVSSLQRGD--SLREGDKVSFEIGQDRKTGK 58

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 59 SKAENVSVL 67


>gi|212709456|ref|ZP_03317584.1| hypothetical protein PROVALCAL_00497 [Providencia alcalifaciens
          DSM 30120]
 gi|261344215|ref|ZP_05971859.1| conserved domain protein [Providencia rustigianii DSM 4541]
 gi|212687794|gb|EEB47322.1| hypothetical protein PROVALCAL_00497 [Providencia alcalifaciens
          DSM 30120]
 gi|282567812|gb|EFB73347.1| conserved domain protein [Providencia rustigianii DSM 4541]
          Length = 70

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +  ++N A G
Sbjct: 6  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQQVEFT-IENGAKG 61

Query: 64 KYSA 67
            +A
Sbjct: 62 PAAA 65


>gi|229916626|ref|YP_002885272.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b]
 gi|229468055|gb|ACQ69827.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b]
          Length = 65

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  EG    G DVF+H SA+ S G  +L EGQ V ++ V  +  G 
Sbjct: 3  GKVKWFNSEKGFGFIEVEG----GKDVFVHFSAIQSEGYKSLDEGQDVEFEIVDGE-RGP 57

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 58 QAANVVKL 65


>gi|75759683|ref|ZP_00739766.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|74492830|gb|EAO55963.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
          Length = 77

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG+    DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 14 QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 68

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 69 PQAANVVKL 77


>gi|313898450|ref|ZP_07831987.1| 7.4 kDa cold shock protein [Clostridium sp. HGF2]
 gi|312956832|gb|EFR38463.1| 7.4 kDa cold shock protein [Clostridium sp. HGF2]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N DKGYGFIT    T++G D+F+H S + ++G   L EG  V ++   ND
Sbjct: 4  GKVKWFNADKGYGFIT----TDAGQDLFVHYSEIQTSGFRTLEEGAKVNFEINTND 55


>gi|253999063|ref|YP_003051126.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. SIP3-4]
 gi|313201165|ref|YP_004039823.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. MP688]
 gi|253985742|gb|ACT50599.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4]
 gi|312440481|gb|ADQ84587.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+   + G+D+F H SA+AS G  +L E + V++D
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFAHFSAIASNGFKSLKENERVSFD 51


>gi|258652266|ref|YP_003201422.1| cold-shock DNA-binding domain-containing protein [Nakamurella
          multipartita DSM 44233]
 gi|258555491|gb|ACV78433.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
          DSM 44233]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KGYGFI+P+   +   DVF+H SA++  G  +L EGQ V ++  Q+
Sbjct: 3  QGTVKWFNAEKGYGFISPD---DGSGDVFVHYSAISGTGYKSLEEGQRVNFEVEQS 55


>gi|205373098|ref|ZP_03225902.1| CspD [Bacillus coahuilensis m4-4]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  EG+    +DVF+H SA+   G  +L EGQ V+++ V+  +
Sbjct: 1  MQNGKVKWFNNEKGFGFIEIEGA----EDVFVHFSAIEGEGYKSLEEGQEVSFEIVEG-S 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|134099636|ref|YP_001105297.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|291005458|ref|ZP_06563431.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|133912259|emb|CAM02372.1| cold-shock DNA-binding domain protein [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P+   + G DVF+H SA+ + G  +L E Q V Y+  Q
Sbjct: 3  QGTVKWFNAEKGFGFIAPD---DGGPDVFVHYSAIDAGGFRSLEEDQRVNYEVTQ 54


>gi|33593717|ref|NP_881361.1| putative cold-shock protein [Bordetella pertussis Tohama I]
 gi|33597156|ref|NP_884799.1| putative cold-shock protein [Bordetella parapertussis 12822]
 gi|33601000|ref|NP_888560.1| putative cold-shock protein [Bordetella bronchiseptica RB50]
 gi|33563790|emb|CAE43032.1| putative cold-shock protein [Bordetella pertussis Tohama I]
 gi|33566607|emb|CAE37865.1| putative cold-shock protein [Bordetella parapertussis]
 gi|33575435|emb|CAE32513.1| putative cold-shock protein [Bordetella bronchiseptica RB50]
 gi|332383120|gb|AEE67967.1| putative cold-shock protein [Bordetella pertussis CS]
          Length = 81

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + G+D+F H S++   G   L EGQ V+++ +Q
Sbjct: 18 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQ 68


>gi|116669616|ref|YP_830549.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
          FB24]
 gi|116609725|gb|ABK02449.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 39/54 (72%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI+P+ S++   DVF H SA+ S+G  +L E Q V+++  Q
Sbjct: 4  GTVKWFNAEKGFGFISPDDSSQ---DVFAHYSAINSSGFRSLEENQKVSFETEQ 54


>gi|302530604|ref|ZP_07282946.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
 gi|302439499|gb|EFL11315.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N +KGYGFI +PEG      DVF+H SA+ + G   L EG  V ++ VQ+  +G
Sbjct: 4  GTVKWFNSEKGYGFIESPEGP-----DVFVHYSAIQADGFRTLDEGDRVEFE-VQSGRDG 57

Query: 64 KYSAENLKLV 73
          +  A +++ V
Sbjct: 58 RSQAADVRKV 67


>gi|222149316|ref|YP_002550273.1| cold shock protein [Agrobacterium vitis S4]
 gi|221736300|gb|ACM37263.1| cold shock protein [Agrobacterium vitis S4]
          Length = 71

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N DKG+GFI P+     G D+F+H SAV ++GL  L+E Q V++D  + D
Sbjct: 1  MAETGIVKFFNNDKGFGFIKPD---NGGADIFVHISAVQASGLNGLSENQKVSFD-TEPD 56

Query: 61 ANGK-YSAENLKL 72
            GK   A NL++
Sbjct: 57 RRGKGPKAVNLQI 69


>gi|167041377|gb|ABZ06130.1| putative cold-shock DNA-binding domain protein [uncultured marine
           microorganism HF4000_005K23]
          Length = 445

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           G +KW+N  KGYGFI  EG  +   D+F+H SAV +AGL  L EG+ +T++
Sbjct: 369 GEVKWFNGAKGYGFIKREGEEK---DIFVHSSAVQNAGLKYLKEGEQLTFE 416


>gi|182437305|ref|YP_001825024.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326777925|ref|ZP_08237190.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178465821|dbj|BAG20341.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326658258|gb|EGE43104.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ V +D  Q
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GADVFAHYSNIAASGFRELQEGQKVNFDVTQ 54


>gi|171778705|ref|ZP_02919801.1| hypothetical protein STRINF_00653 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171282662|gb|EDT48086.1| hypothetical protein STRINF_00653 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N DKG+GFI    S E+G DVF H S + S G  +L +GQ V +D  Q +
Sbjct: 3  QGTVKWFNTDKGFGFI----SQENGADVFAHFSQIKSNGFKSLEDGQKVQFDVEQGE 55


>gi|157371292|ref|YP_001479281.1| cold-shock DNA-binding domain-containing protein [Serratia
          proteamaculans 568]
 gi|270262466|ref|ZP_06190737.1| hypothetical protein SOD_c00830 [Serratia odorifera 4Rx13]
 gi|293395496|ref|ZP_06639780.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
 gi|320539351|ref|ZP_08039020.1| putative cold-shock DNA-binding domain-containing protein
          [Serratia symbiotica str. Tucson]
 gi|157323056|gb|ABV42153.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
 gi|270043150|gb|EFA16243.1| hypothetical protein SOD_c00830 [Serratia odorifera 4Rx13]
 gi|291422180|gb|EFE95425.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
 gi|320030476|gb|EFW12486.1| putative cold-shock DNA-binding domain-containing protein
          [Serratia symbiotica str. Tucson]
          Length = 70

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +  ++N A G
Sbjct: 6  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQNVQFS-IENGAKG 61

Query: 64 KYSA 67
            +A
Sbjct: 62 PSAA 65


>gi|187478585|ref|YP_786609.1| cold shock-like protein [Bordetella avium 197N]
 gi|115423171|emb|CAJ49702.1| cold shock-like protein [Bordetella avium 197N]
          Length = 81

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + G+D+F H S++   G   L EGQ V+++ +Q
Sbjct: 18 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQ 68


>gi|319400565|gb|EFV88795.1| cold shock protein cspD [Staphylococcus epidermidis FRI909]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N DKG+GFI      ++G+DVF+H S +A  G  +L EGQ V +D V+
Sbjct: 1  MNNGTVKWFNVDKGFGFI----ERDNGNDVFVHYSGIAGEGYKSLEEGQNVDFDIVE 53


>gi|126698469|ref|YP_001087366.1| cold shock protein [Clostridium difficile 630]
 gi|254974514|ref|ZP_05270986.1| cold shock protein [Clostridium difficile QCD-66c26]
 gi|255091905|ref|ZP_05321383.1| cold shock protein [Clostridium difficile CIP 107932]
 gi|255100004|ref|ZP_05328981.1| cold shock protein [Clostridium difficile QCD-63q42]
 gi|255305891|ref|ZP_05350063.1| cold shock protein [Clostridium difficile ATCC 43255]
 gi|255313639|ref|ZP_05355222.1| cold shock protein [Clostridium difficile QCD-76w55]
 gi|255516323|ref|ZP_05383999.1| cold shock protein [Clostridium difficile QCD-97b34]
 gi|255649422|ref|ZP_05396324.1| cold shock protein [Clostridium difficile QCD-37x79]
 gi|255654944|ref|ZP_05400353.1| cold shock protein [Clostridium difficile QCD-23m63]
 gi|260682590|ref|YP_003213875.1| cold shock protein [Clostridium difficile CD196]
 gi|260686190|ref|YP_003217323.1| cold shock protein [Clostridium difficile R20291]
 gi|296449689|ref|ZP_06891459.1| cold shock protein CspA [Clostridium difficile NAP08]
 gi|296877994|ref|ZP_06902013.1| cold shock protein CspA [Clostridium difficile NAP07]
 gi|306519503|ref|ZP_07405850.1| cold shock protein [Clostridium difficile QCD-32g58]
 gi|115249906|emb|CAJ67725.1| Cold shock protein [Clostridium difficile]
 gi|260208753|emb|CBA61608.1| cold shock protein [Clostridium difficile CD196]
 gi|260212206|emb|CBE02896.1| cold shock protein [Clostridium difficile R20291]
 gi|296261413|gb|EFH08238.1| cold shock protein CspA [Clostridium difficile NAP08]
 gi|296431062|gb|EFH16890.1| cold shock protein CspA [Clostridium difficile NAP07]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI+ EG     DDVF+H SA+ + G   L EG+ V++D  Q   N  
Sbjct: 4  GIVKWFNNEKGFGFISVEGE----DDVFVHFSAIQNDGYKTLEEGEKVSFDITQ--GNRG 57

Query: 65 YSAENLKLV 73
            AEN+  +
Sbjct: 58 PQAENVNRI 66


>gi|322832644|ref|YP_004212671.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|321167845|gb|ADW73544.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
          Length = 69

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +  ++N A
Sbjct: 3  MMKGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQNVQFT-IENGA 58

Query: 62 NGKYSA 67
           G  +A
Sbjct: 59 KGPSAA 64


>gi|260655196|ref|ZP_05860684.1| conserved domain protein [Jonquetella anthropi E3_33 E1]
 gi|260630118|gb|EEX48312.1| conserved domain protein [Jonquetella anthropi E3_33 E1]
          Length = 65

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFIT    TE G DVF+H SA+   G  +L E   V +D V+ +  G
Sbjct: 2  KGTVKWFNATKGYGFIT----TEEGKDVFVHFSAINMTGYKSLDENDSVEFDVVEGE-KG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|302535905|ref|ZP_07288247.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302444800|gb|EFL16616.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 69

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q     
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQKGP 58

Query: 64 KYSAENLKLVP 74
          +  A+ +KL P
Sbjct: 59 Q--ADMVKLAP 67


>gi|297583376|ref|YP_003699156.1| cold-shock DNA-binding domain-containing protein [Bacillus
          selenitireducens MLS10]
 gi|297141833|gb|ADH98590.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens
          MLS10]
          Length = 65

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E G+DVF+H SA+   G   L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFNAEKGFGFI----EREDGEDVFVHYSAIDQEGFKTLDEGQDVEFEVVEG-ARG 56

Query: 64 KYSAENLKL 72
            ++  +KL
Sbjct: 57 PQASNVVKL 65


>gi|163942598|ref|YP_001647482.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229014070|ref|ZP_04171193.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
 gi|229062554|ref|ZP_04199865.1| Cold shock protein cspB [Bacillus cereus AH603]
 gi|229135709|ref|ZP_04264485.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
 gi|229169605|ref|ZP_04297308.1| Cold shock protein cspB [Bacillus cereus AH621]
 gi|2493764|sp|Q45099|CSPD_BACCE RecName: Full=Cold shock-like protein CspD
 gi|1405476|emb|CAA63610.1| CspD protein [Bacillus cereus]
 gi|163864795|gb|ABY45854.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
 gi|228613880|gb|EEK71002.1| Cold shock protein cspB [Bacillus cereus AH621]
 gi|228647746|gb|EEL03805.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
 gi|228716728|gb|EEL68422.1| Cold shock protein cspB [Bacillus cereus AH603]
 gi|228747216|gb|EEL97096.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ V+++ V  D 
Sbjct: 1  MQTGKVKWFNGEKGFGFIEVEG----GEDVFVHFSAIQGDGFKTLEEGQEVSFEIV--DG 54

Query: 62 NGKYSAENL 70
          N    A N+
Sbjct: 55 NRGPQAANV 63


>gi|171058345|ref|YP_001790694.1| cold-shock DNA-binding domain-containing protein [Leptothrix
          cholodnii SP-6]
 gi|170775790|gb|ACB33929.1| cold-shock DNA-binding domain protein [Leptothrix cholodnii SP-6]
          Length = 79

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N  KG+GFI PE   E G+DVF H SA+   G   L +G  V +D V +   G
Sbjct: 3  RGIVKWFNDVKGFGFIEPE---EGGEDVFAHFSAIQMEGFRTLKQGSSVDFDLV-DGPKG 58

Query: 64 KYSAENLK 71
          K  A+N++
Sbjct: 59 KL-AQNIR 65


>gi|304408316|ref|ZP_07389964.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304342785|gb|EFM08631.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG    G DVF+H SA+   G   L EGQ V +   Q   
Sbjct: 1  MQQGTVKWFNAEKGFGFIEVEG----GSDVFVHFSAIQGDGFKTLDEGQRVEFTIAQ--G 54

Query: 62 NGKYSAENL 70
          N    AEN+
Sbjct: 55 NRGPQAENV 63


>gi|298505030|gb|ADI83753.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
          KN400]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GF+      E+G DVF+H SA+  +G  +L EG+ VT+D V N   G
Sbjct: 3  KGRVKWFNDSKGFGFL----EQENGVDVFVHFSAITGSGFKSLAEGEEVTFDVV-NGPKG 57

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 58 LQAANVCKL 66


>gi|290958273|ref|YP_003489455.1| cold shock protein [Streptomyces scabiei 87.22]
 gi|260647799|emb|CBG70904.1| cold shock protein [Streptomyces scabiei 87.22]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q V++D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQQVSFDVTQGPKGPQ 60

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 61 --AENVTPV 67


>gi|157375749|ref|YP_001474349.1| cold-shock DNA-binding domain-containing protein [Shewanella
          sediminis HAW-EB3]
 gi|157318123|gb|ABV37221.1| cold-shock DNA-binding domain protein [Shewanella sediminis
          HAW-EB3]
          Length = 68

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI      ESG DVF+H  A+ S G   L EGQ V +   Q     +
Sbjct: 6  GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+ +V
Sbjct: 62 --AENVTIV 68


>gi|328462059|gb|EGF34235.1| putative cold shock protein [Lactobacillus helveticus MTCC 5463]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N DKG+GFIT  GS     DVF+H SA+ + G  +L EGQ V+YD  Q
Sbjct: 1  MQTGTVKWFNADKGFGFIT--GSDNK--DVFVHFSAIKTDGFKSLEEGQKVSYDVEQ 53


>gi|72160788|ref|YP_288445.1| cold-shock DNA-binding protein family protein [Thermobifida fusca
          YX]
 gi|71914520|gb|AAZ54422.1| cold-shock DNA-binding protein family [Thermobifida fusca YX]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          +G++KW+N +KG+GFI  +G    G DVF+H SA+A  G  NL E Q V ++ V
Sbjct: 3  QGTVKWFNSEKGFGFIAVDGG---GPDVFVHYSAIAGTGFRNLEENQAVEFEIV 53


>gi|88799572|ref|ZP_01115148.1| Cold shock protein [Reinekea sp. MED297]
 gi|88777657|gb|EAR08856.1| Cold shock protein [Reinekea sp. MED297]
          Length = 69

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ VT+   Q     +
Sbjct: 7  GTVKWFNETKGFGFI----EQENGPDVFAHFSAIQGTGFKTLAEGQKVTFTITQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AEN++ V
Sbjct: 63 --AENIEKV 69


>gi|299138194|ref|ZP_07031374.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX8]
 gi|322436378|ref|YP_004218590.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|298600124|gb|EFI56282.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX8]
 gi|321164105|gb|ADW69810.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 40/57 (70%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KG+GFI    S ++G+DVF+H SA+ S G  +L EGQ V ++ V+
Sbjct: 1  MEQGTVKWFNDAKGFGFI----SRQNGEDVFVHYSAINSNGFKSLQEGQAVQFNVVK 53


>gi|37525256|ref|NP_928600.1| cold shock protein CspE [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36784683|emb|CAE13583.1| cold shock-like protein [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 70

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N  KG+GFITPE   +   DVF+H SA+   G   L EGQ V ++
Sbjct: 6  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQITGFKTLAEGQKVEFE 54


>gi|310829592|ref|YP_003961949.1| cold shock protein [Eubacterium limosum KIST612]
 gi|308741326|gb|ADO38986.1| cold shock protein [Eubacterium limosum KIST612]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N DKG+GFI    S E GDDVF H S++   G   L +G  VT+D  Q
Sbjct: 1  MNNGTVKWFNGDKGFGFI----SREDGDDVFEHFSSIVGDGFKTLNDGDRVTFDTEQ 53


>gi|294630558|ref|ZP_06709118.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292833891|gb|EFF92240.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIQQDG---GGPDVFAHYSNIAAQGFRELQEGQRVNFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|59713778|ref|YP_206553.1| cold shock protein [Vibrio fischeri ES114]
 gi|197337528|ref|YP_002158152.1| hypothetical protein VFMJ11_A0603 [Vibrio fischeri MJ11]
 gi|59482026|gb|AAW87665.1| cold shock protein [Vibrio fischeri ES114]
 gi|197314780|gb|ACH64229.1| conserved domain protein [Vibrio fischeri MJ11]
          Length = 68

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI    + E+G DVF H S + S G   L EGQ V++D  Q
Sbjct: 6  GTVKWFNEEKGFGFI----AQENGPDVFAHFSQIQSEGFKTLKEGQAVSFDVEQ 55


>gi|78221561|ref|YP_383308.1| cold-shock DNA-binding protein family protein [Geobacter
          metallireducens GS-15]
 gi|78192816|gb|ABB30583.1| cold-shock DNA-binding protein family [Geobacter metallireducens
          GS-15]
          Length = 66

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+      E+G+DVF+H SA+   G  +LTEG  VT+D V+
Sbjct: 4  GTVKWFNDSKGFGFL----EQENGEDVFVHFSAINGDGFKSLTEGDRVTFDVVK 53


>gi|30019750|ref|NP_831381.1| cold shock protein [Bacillus cereus ATCC 14579]
 gi|206970763|ref|ZP_03231715.1| cold shock protein CspB [Bacillus cereus AH1134]
 gi|218233734|ref|YP_002366385.1| cold shock protein CspB [Bacillus cereus B4264]
 gi|218896633|ref|YP_002445044.1| cold shock protein CspB [Bacillus cereus G9842]
 gi|228900283|ref|ZP_04064513.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222]
 gi|228907338|ref|ZP_04071196.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 200]
 gi|228920413|ref|ZP_04083758.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228938814|ref|ZP_04101414.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228952082|ref|ZP_04114177.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228957979|ref|ZP_04119716.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228964684|ref|ZP_04125791.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228971695|ref|ZP_04132316.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228978304|ref|ZP_04138681.1| Cold shock-like protein cspB [Bacillus thuringiensis Bt407]
 gi|229043455|ref|ZP_04191165.1| Cold shock-like protein cspB [Bacillus cereus AH676]
 gi|229069255|ref|ZP_04202545.1| Cold shock-like protein cspB [Bacillus cereus F65185]
 gi|229078885|ref|ZP_04211437.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2]
 gi|229109158|ref|ZP_04238757.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15]
 gi|229127029|ref|ZP_04256028.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4]
 gi|229144315|ref|ZP_04272721.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST24]
 gi|229149903|ref|ZP_04278131.1| Cold shock-like protein cspB [Bacillus cereus m1550]
 gi|229172343|ref|ZP_04299903.1| Cold shock-like protein cspB [Bacillus cereus MM3]
 gi|229189784|ref|ZP_04316797.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876]
 gi|296502284|ref|YP_003663984.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|29895295|gb|AAP08582.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gi|206734399|gb|EDZ51569.1| cold shock protein CspB [Bacillus cereus AH1134]
 gi|218161691|gb|ACK61683.1| cold shock protein CspB [Bacillus cereus B4264]
 gi|218544906|gb|ACK97300.1| cold shock protein CspB [Bacillus cereus G9842]
 gi|228593698|gb|EEK51504.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876]
 gi|228611139|gb|EEK68401.1| Cold shock-like protein cspB [Bacillus cereus MM3]
 gi|228633584|gb|EEK90185.1| Cold shock-like protein cspB [Bacillus cereus m1550]
 gi|228639102|gb|EEK95526.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST24]
 gi|228656382|gb|EEL12221.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4]
 gi|228674168|gb|EEL29413.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15]
 gi|228704299|gb|EEL56733.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2]
 gi|228713742|gb|EEL65627.1| Cold shock-like protein cspB [Bacillus cereus F65185]
 gi|228725833|gb|EEL77080.1| Cold shock-like protein cspB [Bacillus cereus AH676]
 gi|228781321|gb|EEM29522.1| Cold shock-like protein cspB [Bacillus thuringiensis Bt407]
 gi|228787785|gb|EEM35743.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228794934|gb|EEM42433.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228801686|gb|EEM48566.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228807614|gb|EEM54138.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228820663|gb|EEM66688.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228839043|gb|EEM84339.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228852199|gb|EEM96995.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 200]
 gi|228859318|gb|EEN03748.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222]
 gi|296323336|gb|ADH06264.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|326939318|gb|AEA15214.1| cold shock protein [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 65

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG+    DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|46199928|ref|YP_005595.1| cold shock protein [Thermus thermophilus HB27]
 gi|55980328|ref|YP_143625.1| cold shock protein [Thermus thermophilus HB8]
 gi|46197555|gb|AAS81968.1| cold shock protein [Thermus thermophilus HB27]
 gi|55771741|dbj|BAD70182.1| cold shock protein [Thermus thermophilus HB8]
          Length = 68

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 5/63 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G +KW+N +KGYGFI      E G DVF+H SA+ + G   L+EG+ V ++ V+   
Sbjct: 1  MNKGIVKWFNAEKGYGFI----QQEEGPDVFVHFSAIEADGFRTLSEGERVEFE-VEPGR 55

Query: 62 NGK 64
          NGK
Sbjct: 56 NGK 58


>gi|107027431|ref|YP_624942.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia AU 1054]
 gi|105896805|gb|ABF79969.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          AU 1054]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFITP+     GDD+F H S +   G   L EGQ V+Y+      NG 
Sbjct: 4  GTVKWFNDNKGFGFITPD---SGGDDLFAHFSEIRGDGFKTLAEGQKVSYET----KNGP 56

Query: 65 YSAENLKLVPK 75
             +   +VP+
Sbjct: 57 KGLQASNIVPQ 67


>gi|332671934|ref|YP_004454942.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332340972|gb|AEE47555.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
          484]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI P+   + G DVF H SA+ S+G  +L E Q V +D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAPD---DGGPDVFAHYSAIQSSGYRSLEENQKVQFDVTQ 54


>gi|182436795|ref|YP_001824514.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|239943459|ref|ZP_04695396.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|239989914|ref|ZP_04710578.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
 gi|282860706|ref|ZP_06269772.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|291446930|ref|ZP_06586320.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|297192805|ref|ZP_06910203.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|326777390|ref|ZP_08236655.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178465311|dbj|BAG19831.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|282564442|gb|EFB69978.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|291349877|gb|EFE76781.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|297151505|gb|EFH31205.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|320009215|gb|ADW04065.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
 gi|326657723|gb|EGE42569.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q+V +D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINASGFRSLEENQVVNFDVTQ 54


>gi|116696141|ref|YP_841717.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|113530640|emb|CAJ96987.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
          Length = 67

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G++KW+N  KG+GFITP+   E G+D+F H SA+   G  +L EGQ V Y
Sbjct: 1  METGTVKWFNDAKGFGFITPD---EGGNDLFAHFSAIEGNGFKSLKEGQKVRY 50


>gi|87119411|ref|ZP_01075308.1| cold-shock DNA-binding domain protein [Marinomonas sp. MED121]
 gi|86164887|gb|EAQ66155.1| cold-shock DNA-binding domain protein [Marinomonas sp. MED121]
          Length = 97

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  EG    G DVF+H  A+   G   L EGQ VT++  Q     +
Sbjct: 35 GIVKWFNDEKGFGFIEREG----GPDVFVHFRAINGTGRRTLQEGQKVTFEVTQGQKGPQ 90

Query: 65 YSAENLKLV 73
            AEN+ +V
Sbjct: 91 --AENVSIV 97


>gi|49487482|ref|YP_044703.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|253730390|ref|ZP_04864555.1| cold-shock protein [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|257793529|ref|ZP_05642508.1| cold shock protein CspB [Staphylococcus aureus A9781]
 gi|258411165|ref|ZP_05681444.1| cold shock protein cspB [Staphylococcus aureus A9763]
 gi|258420930|ref|ZP_05683864.1| cold shock protein [Staphylococcus aureus A9719]
 gi|258438570|ref|ZP_05689793.1| cold shock protein [Staphylococcus aureus A9299]
 gi|258443974|ref|ZP_05692312.1| cold shock protein [Staphylococcus aureus A8115]
 gi|258446209|ref|ZP_05694369.1| cold shock protein [Staphylococcus aureus A6300]
 gi|258449132|ref|ZP_05697238.1| cold shock protein [Staphylococcus aureus A6224]
 gi|258454390|ref|ZP_05702358.1| cold shock protein cspB [Staphylococcus aureus A5937]
 gi|282894269|ref|ZP_06302499.1| cold shock protein cspLA [Staphylococcus aureus A8117]
 gi|282927740|ref|ZP_06335354.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A10102]
 gi|295406853|ref|ZP_06816657.1| cold shock protein [Staphylococcus aureus A8819]
 gi|297245888|ref|ZP_06929750.1| cold shock protein [Staphylococcus aureus A8796]
 gi|49245925|emb|CAG44406.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|253725870|gb|EES94599.1| cold-shock protein [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|257787501|gb|EEV25841.1| cold shock protein CspB [Staphylococcus aureus A9781]
 gi|257840050|gb|EEV64515.1| cold shock protein cspB [Staphylococcus aureus A9763]
 gi|257843120|gb|EEV67535.1| cold shock protein [Staphylococcus aureus A9719]
 gi|257848129|gb|EEV72121.1| cold shock protein [Staphylococcus aureus A9299]
 gi|257850858|gb|EEV74802.1| cold shock protein [Staphylococcus aureus A8115]
 gi|257855035|gb|EEV77978.1| cold shock protein [Staphylococcus aureus A6300]
 gi|257857565|gb|EEV80460.1| cold shock protein [Staphylococcus aureus A6224]
 gi|257863484|gb|EEV86244.1| cold shock protein cspB [Staphylococcus aureus A5937]
 gi|282590500|gb|EFB95578.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A10102]
 gi|282763314|gb|EFC03444.1| cold shock protein cspLA [Staphylococcus aureus A8117]
 gi|294968318|gb|EFG44343.1| cold shock protein [Staphylococcus aureus A8819]
 gi|297177253|gb|EFH36506.1| cold shock protein [Staphylococcus aureus A8796]
          Length = 75

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N +KG+GFI      E+G DVF+H S +AS G   L EGQ VT++  +
Sbjct: 10 MNNGTVKWFNAEKGFGFI----EQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITE 62


>gi|88856605|ref|ZP_01131262.1| cold shock protein [marine actinobacterium PHSC20C1]
 gi|88814259|gb|EAR24124.1| cold shock protein [marine actinobacterium PHSC20C1]
          Length = 67

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI PE   +   DVF H SA+A+ G  +L E Q V +D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAPE---DGSPDVFAHYSAIATNGYKSLDENQKVEFDITQGPKGPQ 60

Query: 65 YSAENLKLV 73
            AEN++ +
Sbjct: 61 --AENIRPI 67


>gi|329941300|ref|ZP_08290579.1| cold-shock protein [Streptomyces griseoaurantiacus M045]
 gi|329299831|gb|EGG43730.1| cold-shock protein [Streptomyces griseoaurantiacus M045]
          Length = 67

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q      
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIAAQGFRELLEGQKVSFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|291166639|gb|EFE28685.1| hypothetical protein HMPREF0389_00602 [Filifactor alocis ATCC
          35896]
          Length = 66

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI+ EG     +DVF+H SA+ + G   L EGQ V ++ V + A
Sbjct: 1  MKQGKVKWFNAEKGFGFISVEGE----NDVFVHFSAIQTEGFKTLEEGQDVEFEIV-DGA 55

Query: 62 NGKYSAENLKL 72
           G  ++   KL
Sbjct: 56 RGPQASNVTKL 66


>gi|219882627|ref|YP_002477791.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|219861633|gb|ACL41974.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
          Length = 67

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI P+  +    DVF H SA+AS+G  +L E Q V +D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAPDDGSA---DVFAHYSAIASSGYRSLDENQKVQFDVTQGPKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENIQ 65


>gi|54303515|ref|YP_133508.1| putative cold shock-like protein [Photobacterium profundum SS9]
 gi|46916945|emb|CAG23708.1| putative Cold shock-like protein [Photobacterium profundum SS9]
          Length = 69

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+A+ G   L EGQ V++D  Q
Sbjct: 6  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIATEGFKTLAEGQKVSFDVEQ 56


>gi|304395415|ref|ZP_07377298.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|308185821|ref|YP_003929952.1| Cold shock-like protein cspG (CPS-G) [Pantoea vagans C9-1]
 gi|304356709|gb|EFM21073.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|308056331|gb|ADO08503.1| Cold shock-like protein cspG (CPS-G) [Pantoea vagans C9-1]
          Length = 70

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW+N +KG+GFI+P    +   DVF+H SA+      +L EGQ V +  V+N A G
Sbjct: 6  RGTVKWFNAEKGFGFISP---ADGSKDVFVHFSAIQGTDFRSLDEGQQVEFT-VENGAKG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVVGL 70


>gi|257095586|ref|YP_003169227.1| cold-shock DNA-binding domain-containing protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048110|gb|ACV37298.1| cold-shock DNA-binding domain protein [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 67

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+  +E   D+F H SA+   G   L EG+ V++D  Q
Sbjct: 4  GTVKWFNDAKGFGFITPDDGSE---DLFAHFSAITMGGFKTLKEGEKVSFDVTQ 54


>gi|253733849|ref|ZP_04868014.1| cold-shock protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|297209461|ref|ZP_06925859.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|300911485|ref|ZP_07128934.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH70]
 gi|253728152|gb|EES96881.1| cold-shock protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|296885922|gb|EFH24857.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|300887664|gb|EFK82860.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH70]
          Length = 71

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N +KG+GFI      E+G DVF+H S +AS G   L EGQ VT++  +
Sbjct: 6  MNNGTVKWFNAEKGFGFI----EQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITE 58


>gi|197119555|ref|YP_002139982.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|253699707|ref|YP_003020896.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
 gi|197088915|gb|ACH40186.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|251774557|gb|ACT17138.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
          Length = 66

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      ++GDDVF+H SA+   G  +L EG  VT+D V+
Sbjct: 4  GTVKWFNDSKGFGFI----EQDNGDDVFVHFSAITGDGFKSLAEGDSVTFDVVK 53


>gi|2493762|sp|Q45097|CSPB_BACCE RecName: Full=Cold shock-like protein CspB
 gi|1405472|emb|CAA63608.1| CspB protein [Bacillus cereus]
          Length = 65

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFI  EGS    +DVF+H SA+ S G   L EGQ V++D  +
Sbjct: 3  GKVKWFNNEKGFGFIEMEGS----EDVFVHFSAIQSDGYKALEEGQEVSFDITE 52


>gi|310825508|ref|YP_003957866.1| cold-shock DNA-binding domain-containing protein [Stigmatella
          aurantiaca DW4/3-1]
 gi|309398580|gb|ADO76039.1| Cold-shock DNA-binding domain protein [Stigmatella aurantiaca
          DW4/3-1]
          Length = 67

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT +G    G+DVF H +A+ + G  +LTEGQ V ++  +      
Sbjct: 4  GVVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQADGFRSLTEGQRVEFEVSRGPKG-- 58

Query: 65 YSAENLKLV 73
            A+N+K +
Sbjct: 59 LQAQNVKPI 67


>gi|320105861|ref|YP_004181451.1| cold-shock DNA-binding domain-containing protein [Terriglobus
          saanensis SP1PR4]
 gi|319924382|gb|ADV81457.1| cold-shock DNA-binding domain protein [Terriglobus saanensis
          SP1PR4]
          Length = 66

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KG+GF+    S  +G+DVF+H SA+ S+G  +L EGQ V ++ V+
Sbjct: 1  MEQGTVKWFNDAKGFGFV----SRANGEDVFVHYSAITSSGFKSLQEGQAVQFNVVK 53


>gi|49484900|ref|YP_042124.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|87160637|ref|YP_495273.1| cold shock protein [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|88196660|ref|YP_501491.1| cold shock protein [Staphylococcus aureus subsp. aureus NCTC
          8325]
 gi|257424187|ref|ZP_05600616.1| cold shock protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257426864|ref|ZP_05603266.1| cold shock protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429500|ref|ZP_05605887.1| cold shock protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432147|ref|ZP_05608510.1| cold shock protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257435108|ref|ZP_05611159.1| cold shock protein [Staphylococcus aureus subsp. aureus M876]
 gi|258423247|ref|ZP_05686139.1| cold shock protein [Staphylococcus aureus A9635]
 gi|258451377|ref|ZP_05699408.1| cold shock protein [Staphylococcus aureus A5948]
 gi|282902622|ref|ZP_06310515.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          C160]
 gi|282907038|ref|ZP_06314886.1| cold shock protein beta-ribbon CspA family protein
          [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910016|ref|ZP_06317824.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282912264|ref|ZP_06320060.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282912904|ref|ZP_06320696.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M899]
 gi|282918059|ref|ZP_06325809.1| cold shock protein [Staphylococcus aureus subsp. aureus D139]
 gi|282920709|ref|ZP_06328428.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A9765]
 gi|282921281|ref|ZP_06328999.1| cold shock protein [Staphylococcus aureus subsp. aureus C427]
 gi|282922532|ref|ZP_06330222.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus C101]
 gi|283767781|ref|ZP_06340696.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus
          aureus subsp. aureus H19]
 gi|283959475|ref|ZP_06376916.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|293497957|ref|ZP_06665811.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus 58-424]
 gi|293511547|ref|ZP_06670241.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus M809]
 gi|293550156|ref|ZP_06672828.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M1015]
 gi|294849818|ref|ZP_06790558.1| cold shock protein [Staphylococcus aureus A9754]
 gi|49243029|emb|CAG41763.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|87126611|gb|ABD21125.1| cold shock protein [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|87204218|gb|ABD32028.1| cold shock protein, putative [Staphylococcus aureus subsp. aureus
          NCTC 8325]
 gi|257273205|gb|EEV05307.1| cold shock protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276495|gb|EEV07946.1| cold shock protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279981|gb|EEV10568.1| cold shock protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257283026|gb|EEV13158.1| cold shock protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257285704|gb|EEV15820.1| cold shock protein [Staphylococcus aureus subsp. aureus M876]
 gi|257846576|gb|EEV70598.1| cold shock protein [Staphylococcus aureus A9635]
 gi|257860907|gb|EEV83724.1| cold shock protein [Staphylococcus aureus A5948]
 gi|282314753|gb|EFB45139.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus C101]
 gi|282315696|gb|EFB46080.1| cold shock protein [Staphylococcus aureus subsp. aureus C427]
 gi|282318344|gb|EFB48704.1| cold shock protein [Staphylococcus aureus subsp. aureus D139]
 gi|282323004|gb|EFB53323.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M899]
 gi|282323960|gb|EFB54276.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282326082|gb|EFB56387.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282329937|gb|EFB59458.1| cold shock protein beta-ribbon CspA family protein
          [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594117|gb|EFB99105.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A9765]
 gi|282597081|gb|EFC02040.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          C160]
 gi|283461660|gb|EFC08744.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus
          aureus subsp. aureus H19]
 gi|283789067|gb|EFC27894.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|290919203|gb|EFD96279.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M1015]
 gi|291096888|gb|EFE27146.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus 58-424]
 gi|291465505|gb|EFF08037.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus M809]
 gi|294823366|gb|EFG39795.1| cold shock protein [Staphylococcus aureus A9754]
          Length = 75

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N +KG+GFI      E+G DVF+H S +AS G   L EGQ VT++  +
Sbjct: 10 MNNGTVKWFNAEKGFGFI----EQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITE 62


>gi|325263633|ref|ZP_08130367.1| conserved domain protein [Clostridium sp. D5]
 gi|324031342|gb|EGB92623.1| conserved domain protein [Clostridium sp. D5]
          Length = 67

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N  KG+GFIT   +   G+DVF+H S +A  G   L +GQ VT+D  Q
Sbjct: 1  MNNGTVKWFNAQKGFGFIT---NAADGEDVFVHFSGLAMDGFKTLEDGQNVTFDITQ 54


>gi|297160336|gb|ADI10048.1| cold shock protein [Streptomyces bingchenggensis BCW-1]
          Length = 67

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q    G+
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELHEGQKVSFDVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 57 KGPQAENIVP 66


>gi|259418300|ref|ZP_05742218.1| conserved domain protein [Silicibacter sp. TrichCH4B]
 gi|259345695|gb|EEW57539.1| conserved domain protein [Silicibacter sp. TrichCH4B]
          Length = 68

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   E G DVF+H SAV  +GL  L + Q V Y+  +   +G+
Sbjct: 4  GTVKWFNTTKGYGFIEPD---EGGKDVFVHISAVERSGLTGLADNQKVGYELSEG-RDGR 59

Query: 65 YSAENLK 71
            A +++
Sbjct: 60 QMAGDIR 66


>gi|307331143|ref|ZP_07610270.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306883223|gb|EFN14282.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q    G+
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELQEGQKVNFDVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 57 KGPQAENIVP 66


>gi|90581455|ref|ZP_01237249.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|90437316|gb|EAS62513.1| putative Cold shock-like protein [Vibrio angustum S14]
          Length = 70

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GF+T +     G DVF+H  A+AS G   L EGQ V++D  Q
Sbjct: 7  GLVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQ 57


>gi|325267631|ref|ZP_08134283.1| cold shock transcription regulator protein [Kingella
          denitrificans ATCC 33394]
 gi|324980981|gb|EGC16641.1| cold shock transcription regulator protein [Kingella
          denitrificans ATCC 33394]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D
Sbjct: 4  GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFD 51


>gi|323489356|ref|ZP_08094586.1| cold shock protein [Planococcus donghaensis MPA1U2]
 gi|323396997|gb|EGA89813.1| cold shock protein [Planococcus donghaensis MPA1U2]
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFI        GDDVF+H + +   G   LTEG+ V++D +  + 
Sbjct: 1  MNQGTVKWFNSEKGYGFI----EYNDGDDVFVHFTGIQGDGFRTLTEGKTVSFDIIDGN- 55

Query: 62 NGKYSAENLKLVPK 75
           G  +A  +++ P+
Sbjct: 56 RGPQAANVIEVDPE 69


>gi|229160646|ref|ZP_04288640.1| Cold shock-like protein cspB [Bacillus cereus R309803]
 gi|228622845|gb|EEK79677.1| Cold shock-like protein cspB [Bacillus cereus R309803]
          Length = 65

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG+    DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIEIEGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|166032459|ref|ZP_02235288.1| hypothetical protein DORFOR_02174 [Dorea formicigenerans ATCC
          27755]
 gi|166026816|gb|EDR45573.1| hypothetical protein DORFOR_02174 [Dorea formicigenerans ATCC
          27755]
          Length = 65

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KGYGFI    S ESG+DVF+H S +   G  +L EGQ V +D  +
Sbjct: 2  KGTVKWFNNQKGYGFI----SDESGNDVFVHYSGLNMEGFKSLEEGQEVEFDVTE 52


>gi|119945576|ref|YP_943256.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119864180|gb|ABM03657.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI       SG DVF H SA+AS G   L EGQ V +   Q     
Sbjct: 6  QGTVKWFNESKGFGFI----EQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQGQKGP 61

Query: 64 KYSAENL 70
          +  AEN+
Sbjct: 62 Q--AENI 66


>gi|729219|sp|P41018|CSPB_BACGO RecName: Full=Cold shock protein CspB
 gi|456240|emb|CAA51791.1| major cold shock protein (CspB) [Sporosarcina globispora]
 gi|740005|prf||2004289B cold shock protein
          Length = 57

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          IKW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 1  IKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKCLEEGQAVSFEIVEGN 50


>gi|89072407|ref|ZP_01158986.1| cold shock protein [Photobacterium sp. SKA34]
 gi|90577241|ref|ZP_01233052.1| cold shock protein [Vibrio angustum S14]
 gi|89051939|gb|EAR57391.1| cold shock protein [Photobacterium sp. SKA34]
 gi|90440327|gb|EAS65507.1| cold shock protein [Vibrio angustum S14]
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 6  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 56


>gi|218902814|ref|YP_002450648.1| cold shock protein CspB [Bacillus cereus AH820]
 gi|218536202|gb|ACK88600.1| cold shock protein CspB [Bacillus cereus AH820]
          Length = 65

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +KW+N +KG+GFI  EG+    DDVF+H SA+   G   L EGQ V++D  + +
Sbjct: 2  QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGEGYKALEEGQEVSFDITEGN 54


>gi|104774747|ref|YP_619727.1| cold shock protein A [Lactobacillus delbrueckii subsp. bulgaricus
          ATCC 11842]
 gi|116514883|ref|YP_813789.1| cold shock protein [Lactobacillus delbrueckii subsp. bulgaricus
          ATCC BAA-365]
 gi|313124689|ref|YP_004034948.1| cold shock-like protein, cspa family [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|21633215|gb|AAM52983.1| CspA protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC
          11842]
 gi|103423828|emb|CAI98855.1| Cold shock protein A [Lactobacillus delbrueckii subsp. bulgaricus
          ATCC 11842]
 gi|116094198|gb|ABJ59351.1| cold-shock DNA-binding protein family [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC BAA-365]
 gi|312281252|gb|ADQ61971.1| cold shock-like protein, CspA family [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|325126587|gb|ADY85917.1| cold shock protein [Lactobacillus delbrueckii subsp. bulgaricus
          2038]
 gi|325685001|gb|EGD27141.1| cold shock protein CspA [Lactobacillus delbrueckii subsp. lactis
          DSM 20072]
          Length = 65

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 9/74 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT      S  DVF+H S++ + G  +L EGQ V+YD  Q   
Sbjct: 1  MQNGTVKWFNADKGFGFITG-----SDGDVFVHFSSIKTNGFKSLEEGQKVSYDVEQ--- 52

Query: 62 NGKYSAENLKLVPK 75
           G    +   +VP+
Sbjct: 53 -GNRGPQATNVVPQ 65


>gi|56461593|ref|YP_156874.1| cold shock protein [Idiomarina loihiensis L2TR]
 gi|56180603|gb|AAV83325.1| Cold shock protein [Idiomarina loihiensis L2TR]
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N  KG+GFI      E+G DVF H SA++S G   LTEGQ V +   Q
Sbjct: 7  GSVKWFNEAKGFGFI----ERENGADVFAHFSAISSDGFKTLTEGQRVEFAVTQ 56


>gi|28275223|ref|NP_717259.2| cold shock domain-contain protein [Shewanella oneidensis MR-1]
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFI+P+     G D F+H  A+ S G   L EGQ V+Y+  Q
Sbjct: 6  GVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSDGFKTLAEGQKVSYEVEQ 56


>gi|145219125|ref|YP_001129834.1| cold-shock DNA-binding protein family protein [Prosthecochloris
          vibrioformis DSM 265]
 gi|145205289|gb|ABP36332.1| cold-shock DNA-binding protein family [Chlorobium phaeovibrioides
          DSM 265]
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N +KGYGFI        G DVF+H SA+  +G   L EGQ VT +  Q D
Sbjct: 6  EGTVKWFNEEKGYGFI----QQSEGKDVFVHYSAINGSGRKTLVEGQKVTMEVSQGD 58


>gi|30262422|ref|NP_844799.1| cold shock protein CspA [Bacillus anthracis str. Ames]
 gi|42781516|ref|NP_978763.1| cold shock protein CspA [Bacillus cereus ATCC 10987]
 gi|47527715|ref|YP_019064.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor']
 gi|47570638|ref|ZP_00241249.1| cold-shock domain family protein-related protein [Bacillus cereus
          G9241]
 gi|49185266|ref|YP_028518.1| cold shock protein CspA [Bacillus anthracis str. Sterne]
 gi|49477693|ref|YP_036543.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|52143060|ref|YP_083768.1| cold shock protein [Bacillus cereus E33L]
 gi|118477820|ref|YP_894971.1| cold-shock DNA-binding protein family protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|170687065|ref|ZP_02878284.1| cold shock protein CspA [Bacillus anthracis str. A0465]
 gi|177649670|ref|ZP_02932672.1| cold shock protein CspA [Bacillus anthracis str. A0174]
 gi|190565634|ref|ZP_03018554.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I]
 gi|196033810|ref|ZP_03101221.1| cold shock protein CspA [Bacillus cereus W]
 gi|196039884|ref|ZP_03107187.1| cold shock protein CspA [Bacillus cereus NVH0597-99]
 gi|196043556|ref|ZP_03110794.1| cold shock protein CspA [Bacillus cereus 03BB108]
 gi|206973608|ref|ZP_03234526.1| cold shock protein CspA [Bacillus cereus H3081.97]
 gi|217959917|ref|YP_002338473.1| cold shock protein CspA [Bacillus cereus AH187]
 gi|218903556|ref|YP_002451390.1| cold shock protein CspA [Bacillus cereus AH820]
 gi|222096006|ref|YP_002530063.1| cold shock protein [Bacillus cereus Q1]
 gi|225864386|ref|YP_002749764.1| cold shock protein CspA [Bacillus cereus 03BB102]
 gi|227814766|ref|YP_002814775.1| cold shock protein CspA [Bacillus anthracis str. CDC 684]
 gi|228915013|ref|ZP_04078615.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228927471|ref|ZP_04090526.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228933740|ref|ZP_04096587.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228946025|ref|ZP_04108365.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228985510|ref|ZP_04145667.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229030123|ref|ZP_04186185.1| Cold shock protein cspB [Bacillus cereus AH1271]
 gi|229091398|ref|ZP_04222612.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
 gi|229121965|ref|ZP_04251183.1| Cold shock protein cspB [Bacillus cereus 95/8201]
 gi|229139109|ref|ZP_04267686.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
 gi|229155998|ref|ZP_04284099.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
 gi|229184633|ref|ZP_04311834.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
 gi|229196632|ref|ZP_04323376.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|229602363|ref|YP_002866754.1| cold shock protein CspA [Bacillus anthracis str. A0248]
 gi|254684998|ref|ZP_05148858.1| cold shock protein CspA [Bacillus anthracis str. CNEVA-9066]
 gi|254722404|ref|ZP_05184192.1| cold shock protein CspA [Bacillus anthracis str. A1055]
 gi|254737445|ref|ZP_05195149.1| cold shock protein CspA [Bacillus anthracis str. Western North
          America USA6153]
 gi|254743370|ref|ZP_05201055.1| cold shock protein CspA [Bacillus anthracis str. Kruger B]
 gi|254751761|ref|ZP_05203798.1| cold shock protein CspA [Bacillus anthracis str. Vollum]
 gi|254760279|ref|ZP_05212303.1| cold shock protein CspA [Bacillus anthracis str. Australia 94]
 gi|301053941|ref|YP_003792152.1| cold shock protein [Bacillus anthracis CI]
 gi|49035526|sp|Q81QK2|CSPE_BACAN RecName: Full=Cold shock-like protein CspE
 gi|30257053|gb|AAP26285.1| cold shock protein CspA [Bacillus anthracis str. Ames]
 gi|42737439|gb|AAS41371.1| cold shock protein CspA [Bacillus cereus ATCC 10987]
 gi|47502863|gb|AAT31539.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor']
 gi|47552693|gb|EAL11133.1| cold-shock domain family protein-related protein [Bacillus cereus
          G9241]
 gi|49179193|gb|AAT54569.1| cold shock protein CspA [Bacillus anthracis str. Sterne]
 gi|49329249|gb|AAT59895.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|51976529|gb|AAU18079.1| cold shock protein [Bacillus cereus E33L]
 gi|118417045|gb|ABK85464.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
          str. Al Hakam]
 gi|170669116|gb|EDT19860.1| cold shock protein CspA [Bacillus anthracis str. A0465]
 gi|172084744|gb|EDT69802.1| cold shock protein CspA [Bacillus anthracis str. A0174]
 gi|190563661|gb|EDV17626.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I]
 gi|195993490|gb|EDX57447.1| cold shock protein CspA [Bacillus cereus W]
 gi|196025865|gb|EDX64534.1| cold shock protein CspA [Bacillus cereus 03BB108]
 gi|196029143|gb|EDX67747.1| cold shock protein CspA [Bacillus cereus NVH0597-99]
 gi|206747764|gb|EDZ59153.1| cold shock protein CspA [Bacillus cereus H3081.97]
 gi|217064050|gb|ACJ78300.1| cold shock protein CspA [Bacillus cereus AH187]
 gi|218534973|gb|ACK87371.1| cold shock protein CspA [Bacillus cereus AH820]
 gi|221240064|gb|ACM12774.1| cold shock protein [Bacillus cereus Q1]
 gi|225787378|gb|ACO27595.1| cold shock protein CspA [Bacillus cereus 03BB102]
 gi|227007633|gb|ACP17376.1| cold shock protein CspA [Bacillus anthracis str. CDC 684]
 gi|228586988|gb|EEK45062.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|228598846|gb|EEK56465.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
 gi|228627605|gb|EEK84331.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
 gi|228644464|gb|EEL00719.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
 gi|228661493|gb|EEL17115.1| Cold shock protein cspB [Bacillus cereus 95/8201]
 gi|228691940|gb|EEL45683.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
 gi|228731181|gb|EEL82101.1| Cold shock protein cspB [Bacillus cereus AH1271]
 gi|228774275|gb|EEM22684.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228813671|gb|EEM59952.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228825973|gb|EEM71759.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228832190|gb|EEM77772.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228844631|gb|EEM89680.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229266771|gb|ACQ48408.1| cold shock protein CspA [Bacillus anthracis str. A0248]
 gi|300376110|gb|ADK05014.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
 gi|324326434|gb|ADY21694.1| cold shock protein CspA [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI  EG    G+DVF+H SA+   G  +L EGQ V+++    D
Sbjct: 1  MTLTGKVKWFNSEKGFGFIEVEG----GNDVFVHFSAITGDGFKSLDEGQEVSFEV--ED 54

Query: 61 ANGKYSAENL 70
           N    A+N+
Sbjct: 55 GNRGPQAKNV 64


>gi|253701491|ref|YP_003022680.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
 gi|251776341|gb|ACT18922.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
          Length = 66

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+      E+GDDVF H SA+   G  +L EG  VT+D V+
Sbjct: 4  GTVKWFNDSKGFGFL----EQENGDDVFCHFSAITGDGFKSLVEGDSVTFDVVK 53


>gi|110834144|ref|YP_693003.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2]
 gi|110647255|emb|CAL16731.1| cold-shock domain family protein [Alcanivorax borkumensis SK2]
          Length = 84

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 5/74 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KGYGF+ P+   E G+D+F+H S +   G  +L  GQ V YD VQ  AN  
Sbjct: 4  GRVKWFNNAKGYGFVRPD---EGGEDLFVHYSYIQMDGYKSLKAGQPVEYD-VQ-PANKG 58

Query: 65 YSAENLKLVPKSSN 78
          Y A NL+   ++SN
Sbjct: 59 YHAINLRTDEEASN 72


>gi|24347442|gb|AAN54703.1|AE015611_1 cold shock domain family protein [Shewanella oneidensis MR-1]
          Length = 81

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFI+P+     G D F+H  A+ S G   L EGQ V+Y+  Q
Sbjct: 18 GVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSDGFKTLAEGQKVSYEVEQ 68


>gi|269793596|ref|YP_003313051.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
          10542]
 gi|269095781|gb|ACZ20217.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
          10542]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI PE   +   DVF H SA+ S+G  +L E Q V +D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAPE---DGSADVFAHYSAIQSSGYRSLDENQKVEFDITQGPKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENIR 65


>gi|90409640|ref|ZP_01217657.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90410063|ref|ZP_01218080.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90413803|ref|ZP_01221790.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90325114|gb|EAS41617.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90328993|gb|EAS45250.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90329416|gb|EAS45673.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 6  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 56


>gi|54303583|ref|YP_133576.1| putative cold shock-like protein [Photobacterium profundum SS9]
 gi|54309095|ref|YP_130115.1| putative cold shock-like protein [Photobacterium profundum SS9]
 gi|46913527|emb|CAG20313.1| putative Cold shock-like protein [Photobacterium profundum SS9]
 gi|46917014|emb|CAG23776.1| putative Cold shock-like protein [Photobacterium profundum SS9]
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 6  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 56


>gi|300855130|ref|YP_003780114.1| cold-shock protein [Clostridium ljungdahlii DSM 13528]
 gi|300435245|gb|ADK15012.1| cold-shock protein [Clostridium ljungdahlii DSM 13528]
          Length = 65

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFIT E     G DVF H S + S G  +L EGQ V+YD V+      
Sbjct: 3  GTVKWFNGEKGFGFITGE----DGKDVFAHFSQINSNGYKSLDEGQKVSYDVVEGPKG-- 56

Query: 65 YSAENLKLV 73
            AEN+  +
Sbjct: 57 LQAENITTI 65


>gi|269956067|ref|YP_003325856.1| cold-shock DNA-binding domain-containing protein [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269304748|gb|ACZ30298.1| cold-shock DNA-binding domain protein [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +GS+KW+N +KGYGFI  +G    G DVF+H SA+ S G  +L E Q V ++  Q
Sbjct: 3  QGSVKWFNAEKGYGFIAQDG---GGADVFVHYSAIQSNGYRSLEEAQRVEFEITQ 54


>gi|322419522|ref|YP_004198745.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
          M18]
 gi|320125909|gb|ADW13469.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
          Length = 66

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+      E+G+DVF+H SA+ S G  +LTEG  VT++ V+
Sbjct: 4  GTVKWFNDSKGFGFL----EQENGEDVFVHFSAINSDGFKSLTEGDSVTFEIVK 53


>gi|317491463|ref|ZP_07949899.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921010|gb|EFV42333.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      + G DVF+H SA+AS G   L EGQ V Y  +Q+   G 
Sbjct: 6  GQVKWFNESKGFGFIEQH---DGGKDVFVHFSAIASEGFKTLAEGQRVEYT-IQDSPRGP 61

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 62 AAANVVAL 69


>gi|282863804|ref|ZP_06272862.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|282561505|gb|EFB67049.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELQEGQKVNFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|253989236|ref|YP_003040592.1| cold shock protein [Photorhabdus asymbiotica subsp. asymbiotica
          ATCC 43949]
 gi|253780686|emb|CAQ83848.1| cold shock protein [Photorhabdus asymbiotica]
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP    +   DVF+H SA+ S G   L EGQ V ++ +Q+   G 
Sbjct: 6  GTVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSDGFKTLAEGQKVEFE-IQDGQKGP 61

Query: 65 YSA 67
           +A
Sbjct: 62 SAA 64


>gi|226939300|ref|YP_002794371.1| cspD2 [Laribacter hongkongensis HLHK9]
 gi|226714224|gb|ACO73362.1| cspD2 [Laribacter hongkongensis HLHK9]
          Length = 68

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + G+D+F H SA+   G   L EGQ V +D  Q
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFAHFSAINMNGFKTLKEGQRVNFDVNQ 54


>gi|149376382|ref|ZP_01894145.1| Cold shock protein [Marinobacter algicola DG893]
 gi|149359396|gb|EDM47857.1| Cold shock protein [Marinobacter algicola DG893]
          Length = 131

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ RG +KW+N  KGYGFI  EG +   DD+F H S+V   G   L  GQ VT+D   +D
Sbjct: 24 IMPRGKVKWFNNAKGYGFIIEEGCS---DDLFAHFSSVQMEGYKTLKAGQAVTFDKKPSD 80


>gi|306834445|ref|ZP_07467559.1| cold shock protein CspA [Streptococcus bovis ATCC 700338]
 gi|304423431|gb|EFM26583.1| cold shock protein CspA [Streptococcus bovis ATCC 700338]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N DKG+GFI    S E+G DVF H S + S G  +L +GQ V +D  Q
Sbjct: 3  QGTVKWFNTDKGFGFI----SQENGADVFAHFSEIKSNGFKSLEDGQKVQFDVEQ 53


>gi|302868803|ref|YP_003837440.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
 gi|315504727|ref|YP_004083614.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|302571662|gb|ADL47864.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
          27029]
 gi|315411346|gb|ADU09463.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF+H SA+ S+G   L EGQ V ++  Q
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GPDVFVHYSAIQSSGYRELNEGQKVEFEVTQ 54


>gi|219125932|ref|XP_002183223.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405498|gb|EEC45441.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 91

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 6/66 (9%)

Query: 3  HRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +G +KW++  KG+GFI P +GST    DVF+H++A+ + G  +L +G+ V Y  V+ D+
Sbjct: 6  QKGVVKWFDTMKGFGFIMPDDGST----DVFVHQTAIQTEGFRSLADGEAVEY-VVEEDS 60

Query: 62 NGKYSA 67
          NG+  A
Sbjct: 61 NGRKKA 66


>gi|82702420|ref|YP_411986.1| cold-shock DNA-binding domain-containing protein [Nitrosospira
          multiformis ATCC 25196]
 gi|82410485|gb|ABB74594.1| cold-shock DNA-binding protein family [Nitrosospira multiformis
          ATCC 25196]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP    +  +D+F H SA+  +G   L EGQ VT++  Q
Sbjct: 4  GTVKWFNEAKGFGFITP---VDGSEDLFAHFSAINMSGFKTLKEGQKVTFEITQ 54


>gi|24374322|ref|NP_718365.1| cold shock domain-contain protein [Shewanella oneidensis MR-1]
 gi|113970742|ref|YP_734535.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-4]
 gi|114047969|ref|YP_738519.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-7]
 gi|117921010|ref|YP_870202.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          ANA-3]
 gi|24348871|gb|AAN55809.1|AE015718_1 cold shock domain family protein [Shewanella oneidensis MR-1]
 gi|113885426|gb|ABI39478.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4]
 gi|113889411|gb|ABI43462.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7]
 gi|117613342|gb|ABK48796.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3]
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI      ESG DVF+H  A+ S G   L EGQ V++   Q     +
Sbjct: 6  GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 62 --AENVTVI 68


>gi|254787663|ref|YP_003075092.1| cold shock DNA-binding domain-containing protein [Teredinibacter
          turnerae T7901]
 gi|237684629|gb|ACR11893.1| cold shock DNA-binding domain protein [Teredinibacter turnerae
          T7901]
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI    S  SG DVF H SA+ S+G   LTEGQ V  ++   D    
Sbjct: 7  GTVKWFNESKGFGFI----SQPSGPDVFAHFSAIESSGFKTLTEGQQV--EFTVTDGQKG 60

Query: 65 YSAENL 70
            A+N+
Sbjct: 61 PQAQNI 66


>gi|238019427|ref|ZP_04599853.1| hypothetical protein VEIDISOL_01296 [Veillonella dispar ATCC
          17748]
 gi|313893700|ref|ZP_07827267.1| cold shock protein CspB [Veillonella sp. oral taxon 158 str.
          F0412]
 gi|237864126|gb|EEP65416.1| hypothetical protein VEIDISOL_01296 [Veillonella dispar ATCC
          17748]
 gi|313441714|gb|EFR60139.1| cold shock protein CspB [Veillonella sp. oral taxon 158 str.
          F0412]
          Length = 65

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW++ +KGYGFI      E G DVF+H SA+   G  +LTEGQ V +D V
Sbjct: 3  GKVKWFSAEKGYGFI----EREDGSDVFVHYSAIQDEGFKSLTEGQNVEFDIV 51


>gi|126650394|ref|ZP_01722622.1| cold shock protein [Bacillus sp. B14905]
 gi|126593044|gb|EAZ87026.1| cold shock protein [Bacillus sp. B14905]
          Length = 66

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  EG    G DVF H SA+   G  +L EGQ V +  +++   G
Sbjct: 3  QGTVKWFNSEKGFGFIEVEG----GQDVFAHFSAIQGEGFKSLEEGQKVEFT-IEDGQRG 57

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 58 PQAANIVKL 66


>gi|86159596|ref|YP_466381.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|85776107|gb|ABC82944.1| cold-shock DNA-binding protein family [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFIT +G    G+DVF H +A+ + G  ++ EGQ V +D  +
Sbjct: 4  GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQAEGFRSVAEGQKVEFDVAK 54


>gi|29830697|ref|NP_825331.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29607810|dbj|BAC71866.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELQEGQKVNFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|71725891|gb|AAZ39064.1| cold shock protein [Exiguobacterium sibiricum]
 gi|71725893|gb|AAZ39065.1| cold shock protein [Exiguobacterium undae]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N +KG+GFI      ESGDDVF+H SA+ + G  +L EGQ V+++
Sbjct: 4  GIVKWFNAEKGFGFI----ERESGDDVFVHFSAIQTDGFKSLDEGQEVSFE 50


>gi|89075956|ref|ZP_01162328.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|89048305|gb|EAR53884.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
          Length = 70

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 7  GLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 57


>gi|90580456|ref|ZP_01236262.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|90438365|gb|EAS63550.1| putative Cold shock-like protein [Vibrio angustum S14]
          Length = 70

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFIT +     G DVF+H  A+ S G   L +GQ V++D  Q
Sbjct: 7  GLVKWFNEDKGFGFITQD---NGGADVFVHFQAIVSEGFKTLMDGQKVSFDVEQ 57


>gi|311107315|ref|YP_003980168.1| cold shock-like protein CspG [Achromobacter xylosoxidans A8]
 gi|310762004|gb|ADP17453.1| cold shock-like protein CspG [Achromobacter xylosoxidans A8]
          Length = 94

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + G+D+F H S++   G   L EGQ V ++ +Q
Sbjct: 31 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQ 81


>gi|242373029|ref|ZP_04818603.1| cold-shock protein [Staphylococcus epidermidis M23864:W1]
 gi|242349183|gb|EES40784.1| cold-shock protein [Staphylococcus epidermidis M23864:W1]
          Length = 75

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N +KG+GFI      E G DVF+H SA+   G  +L EGQ V +D V+ +
Sbjct: 13 GTVKWFNAEKGFGFI----EREDGGDVFVHFSAIVEDGYKSLEEGQSVEFDIVEGE 64


>gi|153216791|ref|ZP_01950615.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae 1587]
 gi|153800523|ref|ZP_01955109.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-3]
 gi|153828062|ref|ZP_01980729.1| putative cold-shock' DNA-binding domain [Vibrio cholerae 623-39]
 gi|229526634|ref|ZP_04416038.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
 gi|229528256|ref|ZP_04417647.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          12129(1)]
 gi|124114125|gb|EAY32945.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae 1587]
 gi|124123967|gb|EAY42710.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-3]
 gi|148876471|gb|EDL74606.1| putative cold-shock' DNA-binding domain [Vibrio cholerae 623-39]
 gi|229334618|gb|EEO00104.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          12129(1)]
 gi|229336792|gb|EEO01810.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
          Length = 70

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GF++ +     GDDVF+H +++ S G   L EGQ V+Y  V+    G 
Sbjct: 7  GSVKWFNETKGFGFLSQD---NGGDDVFVHFNSIVSTGFKTLAEGQKVSY-LVEKGKKGL 62

Query: 65 YSAE 68
           +AE
Sbjct: 63 QAAE 66


>gi|163840196|ref|YP_001624601.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
 gi|162953672|gb|ABY23187.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
          Length = 100

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFITP+   ES +DVF+H S + + G   L E Q V ++  Q
Sbjct: 35 QGTVKWFNAEKGFGFITPD---ESPNDVFVHYSEIQTKGFRTLDENQRVEFEIGQ 86


>gi|134095623|ref|YP_001100698.1| RNA chaperone [Herminiimonas arsenicoxydans]
 gi|152983285|ref|YP_001354206.1| cold-shock DNA-binding domain-containing protein
          [Janthinobacterium sp. Marseille]
 gi|329905635|ref|ZP_08274166.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480]
 gi|133739526|emb|CAL62577.1| Cold shock-like protein CspD (CSP-D) [Herminiimonas
          arsenicoxydans]
 gi|151283362|gb|ABR91772.1| cold-shock DNA-binding domain protein [Janthinobacterium sp.
          Marseille]
 gi|327547557|gb|EGF32363.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + G+D+F H SA+   G   L EGQ V ++  Q
Sbjct: 4  GTVKWFNDSKGFGFITPD---DGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQ 54


>gi|157962306|ref|YP_001502340.1| cold-shock DNA-binding domain-containing protein [Shewanella
          pealeana ATCC 700345]
 gi|167623727|ref|YP_001674021.1| cold-shock DNA-binding domain-containing protein [Shewanella
          halifaxensis HAW-EB4]
 gi|170726405|ref|YP_001760431.1| cold-shock DNA-binding domain-containing protein [Shewanella
          woodyi ATCC 51908]
 gi|212635812|ref|YP_002312337.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3]
 gi|157847306|gb|ABV87805.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
          700345]
 gi|167353749|gb|ABZ76362.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis
          HAW-EB4]
 gi|169811752|gb|ACA86336.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
          51908]
 gi|212557296|gb|ACJ29750.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3]
          Length = 68

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI      ESG DVF+H  A+ S G   L EGQ V +   Q     +
Sbjct: 6  GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+ +V
Sbjct: 62 --AENVTVV 68


>gi|91200067|emb|CAJ73110.1| strongly similar to cold shock protein A [Candidatus Kuenenia
          stuttgartiensis]
          Length = 66

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI    S ++G+DVF+H++A+   G   L EG  V ++ V+ D  G
Sbjct: 3  QGTVKWFNDSKGFGFI----SQDNGEDVFVHQTAIECEGFRTLAEGDKVEFEVVK-DQKG 57

Query: 64 KYSAENLKL 72
            + + +KL
Sbjct: 58 YKATKVVKL 66


>gi|90581342|ref|ZP_01237138.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|90437452|gb|EAS62647.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|119116583|dbj|BAF40852.1| cold-shock protein CspV [Photobacterium phosphoreum]
          Length = 70

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 7  GLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 57


>gi|27366937|ref|NP_762464.1| cold shock protein [Vibrio vulnificus CMCP6]
 gi|37676712|ref|NP_937108.1| cold shock protein [Vibrio vulnificus YJ016]
 gi|320158815|ref|YP_004191193.1| cold shock protein CspG [Vibrio vulnificus MO6-24/O]
 gi|27358504|gb|AAO07454.1|AE016809_216 Cold shock protein [Vibrio vulnificus CMCP6]
 gi|37201255|dbj|BAC97078.1| cold shock protein [Vibrio vulnificus YJ016]
 gi|319934127|gb|ADV88990.1| cold shock protein CspG [Vibrio vulnificus MO6-24/O]
          Length = 70

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N  KG+GFI+ +     G+DVF+H +++ S G   L EGQ VT++  Q
Sbjct: 7  GSVKWFNETKGFGFISQD---NGGNDVFVHFNSIVSTGFKTLAEGQRVTFEVEQ 57


>gi|297171013|gb|ADI22027.1| cold shock proteins [uncultured myxobacterium HF0200_05J13]
          Length = 69

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFI P G    G+DVF+H S +   G   L EGQ V Y+ + +D
Sbjct: 4  GTVKWFNNKKGFGFILPAG---GGEDVFVHFSVIEGDGFKTLAEGQGVEYELMDSD 56


>gi|297613721|gb|ADI48290.1| cold-shock protein [Lactococcus piscium]
          Length = 54

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFIT       G DVF+H SA+ + G   L EGQ V YD
Sbjct: 3  QGTVKWFNAEKGFGFITGA----DGKDVFVHFSAIQTDGFKTLEEGQAVNYD 50


>gi|37525773|ref|NP_929117.1| hypothetical protein plu1842 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36785202|emb|CAE14135.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 70

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +  ++N A G
Sbjct: 6  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFT-IENGAKG 61

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 62 PAAANVMAI 70


>gi|299821691|ref|ZP_07053579.1| cold shock protein CspA [Listeria grayi DSM 20601]
 gi|299817356|gb|EFI84592.1| cold shock protein CspA [Listeria grayi DSM 20601]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G +KW+N +KGYGFI     TE+G+D+F H +A+   G   L EGQ V+++ V+
Sbjct: 1  MQNGKVKWFNNEKGYGFI----ETENGEDIFAHFTAIQGDGYKTLEEGQSVSFEVVE 53


>gi|30249291|ref|NP_841361.1| cold shock DNA-binding domain-containing protein [Nitrosomonas
          europaea ATCC 19718]
 gi|30180610|emb|CAD85223.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718]
          Length = 67

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+  +E   D+F H SA+   G   L EGQ V++D  Q
Sbjct: 4  GTVKWFNDAKGFGFITPDDGSE---DLFAHFSAINMNGFKTLREGQKVSFDVTQ 54


>gi|326491571|dbj|BAJ94263.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 191

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 46/67 (68%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI+P+  +E   D+F+H+S++ + G  +L EG++V +   + D +G
Sbjct: 8  KGTVKWFNDTKGFGFISPDDGSE---DLFVHQSSIKADGFRSLAEGEVVEFSVSEGD-DG 63

Query: 64 KYSAENL 70
          +  A ++
Sbjct: 64 RTKAVDV 70


>gi|320105451|ref|YP_004181041.1| cold-shock DNA-binding domain-containing protein [Terriglobus
          saanensis SP1PR4]
 gi|319923972|gb|ADV81047.1| cold-shock DNA-binding domain protein [Terriglobus saanensis
          SP1PR4]
          Length = 66

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GF+    S  +G+DVF+H +A+ S G  +L EGQ V ++ V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFL----SRANGEDVFVHHTAIQSNGFRSLQEGQNVQFNVVKGPK 56

Query: 62 NGKYSAENLKL 72
             + AEN+++
Sbjct: 57 G--WQAENVQV 65


>gi|83944783|ref|ZP_00957149.1| putative cold shock-like transcription regulator protein
          [Oceanicaulis alexandrii HTCC2633]
 gi|83851565|gb|EAP89420.1| putative cold shock-like transcription regulator protein
          [Oceanicaulis alexandrii HTCC2633]
          Length = 70

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N +KG+GFITP+   E   DVF+H +AV  AGL +L +GQ + ++  + D  GK
Sbjct: 4  GTVKFFNTEKGFGFITPD---EGDKDVFVHITAVKDAGLNDLRDGQRIEFE-TEPDRRGK 59

Query: 65 -YSAENLK 71
             A NLK
Sbjct: 60 GPKAVNLK 67


>gi|319781907|ref|YP_004141383.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|317167795|gb|ADV11333.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 70

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N  KG+GFITP+   +   DVF+H SAV ++GL  L +GQ V++D  + D
Sbjct: 1  MPQTGTVKFFNHAKGFGFITPD---DGAKDVFVHISAVQASGLPGLEDGQKVSFD-TEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KRGK 60


>gi|212639235|ref|YP_002315755.1| cold shock protein, CspA family [Anoxybacillus flavithermus WK1]
 gi|212560715|gb|ACJ33770.1| Cold shock protein, CspA family [Anoxybacillus flavithermus WK1]
          Length = 81

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          ++ G +KW+N +KG+GFI     T+ G DVF+H +A+   G   L EG+ VT+D V
Sbjct: 16 MNTGKVKWFNAEKGFGFI----ETDGGTDVFVHFTAIQGTGFKTLEEGEKVTFDIV 67


>gi|21322752|dbj|BAB78536.2| cold shock protein-1 [Triticum aestivum]
          Length = 229

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI+PE  +E   D+F+H+SA+ S G  +L E   V ++ +  D +G
Sbjct: 6  KGTVKWFNVTKGFGFISPEDGSE---DLFVHQSAIKSDGYRSLNENDTVEFEVITGD-DG 61

Query: 64 KYSAENL 70
          +  A ++
Sbjct: 62 RTKASDV 68


>gi|134094972|ref|YP_001100047.1| RNA chaperone [Herminiimonas arsenicoxydans]
 gi|152983242|ref|YP_001353208.1| cold shock transcription regulator protein [Janthinobacterium sp.
          Marseille]
 gi|329903345|ref|ZP_08273438.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480]
 gi|133738875|emb|CAL61922.1| Cold shock-like protein cspE (CSP-E) [Herminiimonas
          arsenicoxydans]
 gi|151283319|gb|ABR91729.1| cold shock transcription regulator protein [Janthinobacterium sp.
          Marseille]
 gi|327548423|gb|EGF33101.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480]
          Length = 67

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFITP+   E G+D+F H SA+ S+G  +L E Q V+++
Sbjct: 4  GIVKWFNDSKGFGFITPD---EGGEDLFAHFSAIQSSGFKSLQENQRVSFE 51


>gi|148555809|ref|YP_001263391.1| cold-shock DNA-binding protein family protein [Sphingomonas
           wittichii RW1]
 gi|148500999|gb|ABQ69253.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1]
          Length = 288

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G +K++N  KG+GFI  +   + G+DVF+H SAV  AGL  L EGQ + +  V  D  G
Sbjct: 126 KGVVKFFNGQKGFGFIVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLEFTLV--DRGG 180

Query: 64  KYSAENLKL 72
           + SA +LK+
Sbjct: 181 RVSATDLKI 189



 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AG+ NL EG  + ++ ++ D  GK
Sbjct: 223 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMTNLNEGDRLEFE-LEVDRRGK 278

Query: 65  YSAENL 70
           Y+A NL
Sbjct: 279 YAAVNL 284


>gi|51244214|ref|YP_064098.1| cold-shock protein (CspB) [Desulfotalea psychrophila LSv54]
 gi|50875251|emb|CAG35091.1| probable cold-shock protein (CspB) [Desulfotalea psychrophila
          LSv54]
          Length = 66

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KW+N  KG+GFI  EG    GDD+F+H +++ ++G   L EG  VT+D  Q
Sbjct: 3  EGTVKWFNDAKGFGFIEQEG----GDDLFVHHTSINASGFKTLEEGARVTFDIEQ 53


>gi|127512097|ref|YP_001093294.1| cold-shock DNA-binding domain-containing protein [Shewanella
          loihica PV-4]
 gi|126637392|gb|ABO23035.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4]
          Length = 69

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFI        G DVF+H  A+ S G   L EGQ VT+D  Q    G+
Sbjct: 6  GTVKWFNEDKGFGFIE---QANGGADVFVHFRAIVSDGYKTLAEGQKVTFDIEQ----GQ 58

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 59 KGLQAANVVP 68


>gi|15598462|ref|NP_251956.1| cold acclimation protein B [Pseudomonas aeruginosa PAO1]
 gi|107102797|ref|ZP_01366715.1| hypothetical protein PaerPA_01003865 [Pseudomonas aeruginosa
          PACS2]
 gi|218890541|ref|YP_002439405.1| cold acclimation protein B [Pseudomonas aeruginosa LESB58]
 gi|254236229|ref|ZP_04929552.1| cold acclimation protein B [Pseudomonas aeruginosa C3719]
 gi|2493770|sp|P95459|CSPA_PSEAE RecName: Full=Major cold shock protein CspA
 gi|9949391|gb|AAG06654.1|AE004749_3 cold acclimation protein B [Pseudomonas aeruginosa PAO1]
 gi|1778825|gb|AAB40922.1| major cold shock protein CspA [Pseudomonas aeruginosa PAO1]
 gi|126168160|gb|EAZ53671.1| cold acclimation protein B [Pseudomonas aeruginosa C3719]
 gi|218770764|emb|CAW26529.1| cold acclimation protein B [Pseudomonas aeruginosa LESB58]
          Length = 69

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
            G++KW+N  KG+GFITP    ESG+D+F+H  ++   G  +L EGQ V++  V
Sbjct: 5  QNGTVKWFNDAKGFGFITP----ESGNDLFVHFRSIQGTGFKSLQEGQKVSFVVV 55


>gi|329727663|gb|EGG64119.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 21172]
          Length = 66

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     ++VF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NNVFVHFSAINQDGYKSLEEGQAVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|326796216|ref|YP_004314036.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
 gi|326546980|gb|ADZ92200.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
          Length = 70

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  EG    G DVF+H  A+   G  +L EGQ VT++  Q     +
Sbjct: 8  GIVKWFNDEKGFGFIEREG----GPDVFVHFRAINGTGRRSLQEGQKVTFEVTQGQKGPQ 63

Query: 65 YSAENLKLV 73
            AEN+ +V
Sbjct: 64 --AENVTVV 70


>gi|293606230|ref|ZP_06688593.1| cold shock transcription regulator protein [Achromobacter
          piechaudii ATCC 43553]
 gi|292815377|gb|EFF74495.1| cold shock transcription regulator protein [Achromobacter
          piechaudii ATCC 43553]
 gi|317407692|gb|EFV87625.1| cold-shock protein [Achromobacter xylosoxidans C54]
          Length = 81

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + G+D+F H S++   G   L EGQ V ++ +Q
Sbjct: 18 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQ 68


>gi|297580126|ref|ZP_06942053.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297535772|gb|EFH74606.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 70

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GF++ +     GDDVF+H +++ S G   L EGQ V+Y  V+    G 
Sbjct: 7  GSVKWFNETKGFGFLSQD---NGGDDVFVHFNSIVSTGFKTLAEGQKVSY-LVEKGKKGL 62

Query: 65 YSAE 68
           +AE
Sbjct: 63 QAAE 66


>gi|163856975|ref|YP_001631273.1| cold-shock protein [Bordetella petrii DSM 12804]
 gi|163260703|emb|CAP43005.1| cold-shock protein [Bordetella petrii]
          Length = 81

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + G+D+F H S++   G   L EGQ V ++ +Q
Sbjct: 18 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQ 68


>gi|224000015|ref|XP_002289680.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
           pseudonana CCMP1335]
 gi|220974888|gb|EED93217.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
           pseudonana CCMP1335]
          Length = 136

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 47/68 (69%), Gaps = 6/68 (8%)

Query: 4   RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G++KW++  KG+GF+ P +GS E    VF+H SA+ + G  +L +G++V ++ +Q + N
Sbjct: 43  KGTVKWFDAKKGFGFLVPDDGSAE----VFVHHSAIHANGFRSLGDGEVVEFEVMQ-EPN 97

Query: 63  GKYSAENL 70
           GK+ A N+
Sbjct: 98  GKWKALNV 105


>gi|49082396|gb|AAT50598.1| PA3266 [synthetic construct]
          Length = 70

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
            G++KW+N  KG+GFITP    ESG+D+F+H  ++   G  +L EGQ V++  V
Sbjct: 5  QNGTVKWFNDAKGFGFITP----ESGNDLFVHFRSIQGTGFKSLQEGQKVSFVVV 55


>gi|89073826|ref|ZP_01160333.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|90581460|ref|ZP_01237254.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|89050361|gb|EAR55862.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|90437321|gb|EAS62518.1| putative Cold shock-like protein [Vibrio angustum S14]
          Length = 67

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 4  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 54


>gi|114330329|ref|YP_746551.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
          eutropha C91]
 gi|114307343|gb|ABI58586.1| cold shock protein E (CspE) [Nitrosomonas eutropha C91]
          Length = 67

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFITP+  +E   D+F H SA++  G   L EGQ V++D  Q
Sbjct: 4  GIVKWFNDAKGFGFITPDDGSE---DLFAHFSAISMNGFKTLREGQRVSFDVTQ 54


>gi|108803576|ref|YP_643513.1| cold-shock DNA-binding protein family protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108764819|gb|ABG03701.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 69

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++ +KG+GFI     TESG++V +H + +   G   L EG  V Y  V+ + +G
Sbjct: 3  RGRVKWFSGEKGFGFI----ETESGEEVLVHYTEIKGEGFRALEEGAEVEYAAVKTE-DG 57

Query: 64 KYSAENLKLVPK 75
          +  A  ++++P+
Sbjct: 58 RRRAFGVRMLPR 69


>gi|116051280|ref|YP_789888.1| cold acclimation protein B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152985784|ref|YP_001347238.1| cold acclimation protein B [Pseudomonas aeruginosa PA7]
 gi|254241955|ref|ZP_04935277.1| cold acclimation protein B [Pseudomonas aeruginosa 2192]
 gi|296388237|ref|ZP_06877712.1| cold acclimation protein B [Pseudomonas aeruginosa PAb1]
 gi|313108607|ref|ZP_07794608.1| cold acclimation protein B [Pseudomonas aeruginosa 39016]
 gi|115586501|gb|ABJ12516.1| cold acclimation protein B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195333|gb|EAZ59396.1| cold acclimation protein B [Pseudomonas aeruginosa 2192]
 gi|150960942|gb|ABR82967.1| cold acclimation protein B [Pseudomonas aeruginosa PA7]
 gi|310881110|gb|EFQ39704.1| cold acclimation protein B [Pseudomonas aeruginosa 39016]
          Length = 69

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
            G++KW+N  KG+GFITP    ESG+D+F+H  ++   G  +L EGQ V++  V
Sbjct: 5  QNGTVKWFNDAKGFGFITP----ESGNDLFVHFRSIQGTGFKSLQEGQKVSFVVV 55


>gi|254391125|ref|ZP_05006332.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|294814384|ref|ZP_06773027.1| Cold shock-like protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442775|ref|ZP_08217509.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|197704819|gb|EDY50631.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|294326983|gb|EFG08626.1| Cold shock-like protein [Streptomyces clavuligerus ATCC 27064]
          Length = 67

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L E Q+V +D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINATGFRSLEENQVVNFDVTQ 54


>gi|71725895|gb|AAZ39066.1| cold shock protein [Exiguobacterium sibiricum 255-15]
          Length = 67

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N +KG+GFI      E+GDDVF+H SA+ + G  +L EGQ V+++
Sbjct: 4  GKVKWFNSEKGFGFI----ERENGDDVFVHFSAIQTDGFKSLDEGQEVSFE 50


>gi|186477475|ref|YP_001858945.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184193934|gb|ACC71899.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 67

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H S +   G   L E Q VTYD V+   
Sbjct: 1  METGTVKWFNDAKGFGFITPDA---GGEDLFAHFSEIRVEGFKTLQENQKVTYD-VKTGP 56

Query: 62 NGKYSAENLK 71
           GK +A N+K
Sbjct: 57 KGKQAA-NIK 65


>gi|114332012|ref|YP_748234.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
          eutropha C91]
 gi|114309026|gb|ABI60269.1| cold-shock DNA-binding protein family [Nitrosomonas eutropha C91]
          Length = 67

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+  +E   D+F H SA+  +G   L EGQ V+++  Q
Sbjct: 4  GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMSGFKTLKEGQKVSFEVTQ 54


>gi|110598159|ref|ZP_01386437.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
 gi|110340291|gb|EAT58788.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
          Length = 69

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V  +  Q  A G
Sbjct: 6  EGTVKWFNEEKGYGFIEQKG----GKDVFVHHSAINGTGRKTLVEGQKVLMEVTQG-AKG 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -LQAENV 66


>gi|109900034|ref|YP_663289.1| cold-shock DNA-binding domain-containing protein
          [Pseudoalteromonas atlantica T6c]
 gi|109702315|gb|ABG42235.1| cold-shock DNA-binding protein family [Pseudoalteromonas
          atlantica T6c]
          Length = 68

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59
          +G++KW+N DKG+GFITPE   + G D+F+H S + S G +  L +GQ V ++  Q+
Sbjct: 3  QGTVKWFNADKGFGFITPE---DGGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQS 56


>gi|294498189|ref|YP_003561889.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295703539|ref|YP_003596614.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294348126|gb|ADE68455.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294801198|gb|ADF38264.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 67

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M   G++KW+N +KG+GFI   G     +DVF+H SA+ S G   L EGQ V ++ V+
Sbjct: 1  MATTGTVKWFNSEKGFGFIEVPGE----NDVFVHFSAIQSEGFKTLEEGQKVEFEIVE 54


>gi|159576908|dbj|BAF92769.1| hypothetical protein [Photobacterium phosphoreum]
          Length = 70

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 7  GLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 57


>gi|90408760|ref|ZP_01216906.1| Cold shock protein [Psychromonas sp. CNPT3]
 gi|90310140|gb|EAS38279.1| Cold shock protein [Psychromonas sp. CNPT3]
          Length = 68

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      E+G DVF H SA+AS G   L EGQ V +   Q
Sbjct: 6  GTVKWFNESKGFGFI----EQENGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQ 55


>gi|269103742|ref|ZP_06156439.1| cold shock protein [Photobacterium damselae subsp. damselae CIP
          102761]
 gi|268163640|gb|EEZ42136.1| cold shock protein [Photobacterium damselae subsp. damselae CIP
          102761]
          Length = 69

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFI+ +     G DVF+H  A+AS G   L EGQ V++D  Q
Sbjct: 6  GIVKWFNEEKGFGFISQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQ 56


>gi|268315694|ref|YP_003289413.1| cold-shock DNA-binding domain-containing protein [Rhodothermus
          marinus DSM 4252]
 gi|262333228|gb|ACY47025.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM
          4252]
          Length = 76

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 6/78 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQN 59
          M  RG +KW+N DKGYGFI P    +   DVF+HR+ V   G    L EG+ V+Y+ V+ 
Sbjct: 1  MAQRGRVKWFNIDKGYGFIEP---NDGSKDVFVHRNNVPGLGWDEGLREGEEVSYE-VER 56

Query: 60 DANGKYSAENLKLVPKSS 77
             G  SA N++ + +SS
Sbjct: 57 TPKG-LSAMNVERLSRSS 73


>gi|254245244|ref|ZP_04938566.1| hypothetical protein PA2G_06136 [Pseudomonas aeruginosa 2192]
 gi|126198622|gb|EAZ62685.1| hypothetical protein PA2G_06136 [Pseudomonas aeruginosa 2192]
          Length = 203

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SG+D+F+H  A+   G   L EGQ V +  VQ D
Sbjct: 139 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 190


>gi|50084936|ref|YP_046446.1| cold shock-like protein [Acinetobacter sp. ADP1]
 gi|49530912|emb|CAG68624.1| cold shock-like protein [Acinetobacter sp. ADP1]
          Length = 70

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 10/73 (13%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI    S++SG+DVF H S ++++G   L EGQ V +  V    NG
Sbjct: 6  QGTVKWFNETKGFGFI----SSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVV----NG 57

Query: 64 K--YSAENLKLVP 74
          K    A N+ +V 
Sbjct: 58 KKGLQASNISIVK 70


>gi|331006239|ref|ZP_08329559.1| Cold shock protein CspE [gamma proteobacterium IMCC1989]
 gi|330419928|gb|EGG94274.1| Cold shock protein CspE [gamma proteobacterium IMCC1989]
          Length = 69

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      ESG DVF H SA+ S G   L EGQ V   +V  D    
Sbjct: 7  GTVKWFNESKGFGFI----EQESGPDVFAHFSAIVSDGFKTLMEGQKV--QFVVTDGQKG 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 PQAENI 66


>gi|308049339|ref|YP_003912905.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM
          9799]
 gi|307631529|gb|ADN75831.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM
          9799]
          Length = 69

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N DKG+GFIT +     G DVF+H  A+   G   L EGQ V++D  Q
Sbjct: 6  GTVKWFNEDKGFGFITQD---NGGADVFVHFRAIQGDGFKTLAEGQQVSFDIEQ 56


>gi|89074300|ref|ZP_01160790.1| Putative cold shock-like protein cspG [Photobacterium sp. SKA34]
 gi|90578631|ref|ZP_01234441.1| Putative cold shock-like protein cspG [Vibrio angustum S14]
 gi|89050004|gb|EAR55538.1| Putative cold shock-like protein cspG [Photobacterium sp. SKA34]
 gi|90439464|gb|EAS64645.1| Putative cold shock-like protein cspG [Vibrio angustum S14]
          Length = 69

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFIT +     G DVF+H  A+   G   LTEGQ V+Y+  Q
Sbjct: 6  GTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLTEGQKVSYETEQ 56


>gi|260904248|ref|ZP_05912570.1| cold-shock DNA-binding domain protein [Brevibacterium linens BL2]
          Length = 67

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KGYGFIT EG+ +   DVF+H SA+   G   L EGQ V ++
Sbjct: 3  QGTVKWFNAEKGYGFITLEGNNQ---DVFVHWSAIQMDGYRALEEGQQVEFE 51


>gi|294653627|gb|ADF28646.1| cold shock protein [Bacillus subtilis]
          Length = 68

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +KW+N +KG+GFI  EG    G DVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 8  VKWFNSEKGFGFIEVEG----GSDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN 57


>gi|302532074|ref|ZP_07284416.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302440969|gb|EFL12785.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 67

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDGG---GPDVFAHYSNIAAQGFRELNEGQKVNFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|209809774|ref|YP_002265313.1| cold shock-like protein CspG [Aliivibrio salmonicida LFI1238]
 gi|208011337|emb|CAQ81788.1| cold shock-like protein CspG [Aliivibrio salmonicida LFI1238]
          Length = 69

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 6  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 56


>gi|116248183|sp|Q61CX7|LIN28_CAEBR RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage
           protein 28
 gi|309371318|emb|CAP31656.3| CBR-LIN-28 protein [Caenorhabditis briggsae AF16]
          Length = 237

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS KW+N  KGYGF+  +    +G+D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 55  GSCKWFNVSKGYGFVIDDN---TGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110


>gi|15226451|ref|NP_179702.1| ATGRP2B (GLYCINE-RICH PROTEIN 2B); DNA binding / nucleic acid
          binding / zinc ion binding [Arabidopsis thaliana]
 gi|17366505|sp|Q38896|GRP2B_ARATH RecName: Full=Glycine-rich protein 2b; Short=AtGRP2b
 gi|1063684|gb|AAA91165.1| AtGRP2b [Arabidopsis thaliana]
 gi|4803937|gb|AAD29810.1| glycine-rich protein (AtGRP2) [Arabidopsis thaliana]
 gi|16323178|gb|AAL15323.1| At2g21060/F26H11.18 [Arabidopsis thaliana]
 gi|60543359|gb|AAX22277.1| At2g21060 [Arabidopsis thaliana]
 gi|330252023|gb|AEC07117.1| glycine-rich protein 2B [Arabidopsis thaliana]
          Length = 201

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 4/65 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G++KW++  KG+GFITP   ++ GDD+F+H+S++ S G  +L   + V +D V+ D +
Sbjct: 15 RKGTVKWFDTQKGFGFITP---SDGGDDLFVHQSSIRSEGFRSLAAEESVEFD-VEVDNS 70

Query: 63 GKYSA 67
          G+  A
Sbjct: 71 GRPKA 75


>gi|116750635|ref|YP_847322.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116699699|gb|ABK18887.1| cold-shock DNA-binding protein family [Syntrophobacter
          fumaroxidans MPOB]
          Length = 67

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KGYGFI    +T+ GD VF+H SA+A+ G  +L+EG+ VT+D
Sbjct: 4  GRVKWFNDKKGYGFIE---TTDQGD-VFVHYSAIAAEGFRSLSEGERVTFD 50


>gi|149187264|ref|ZP_01865562.1| cold shock protein [Vibrio shilonii AK1]
 gi|148838800|gb|EDL55739.1| cold shock protein [Vibrio shilonii AK1]
          Length = 69

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 8/71 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI    + E+G DVF+H  A++  G   L EGQ V++   Q    G+
Sbjct: 7  GTVKWFNEEKGYGFI----AQENGPDVFVHFRAISGEGFKTLKEGQAVSFGVEQ----GQ 58

Query: 65 YSAENLKLVPK 75
             + + ++P+
Sbjct: 59 KGPQAVNVIPQ 69


>gi|20803992|emb|CAD31569.1| PUTATIVE TRANSCRIPTION REGULATOR COLD SHOCK PROTEIN [Mesorhizobium
           loti R7A]
          Length = 200

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 3/47 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           ++KWYNP+KG+GFI PE   +   D+F+H +A+  +GL  L EGQ V
Sbjct: 138 TVKWYNPEKGFGFIAPENGEK---DIFVHATALTRSGLSMLMEGQKV 181


>gi|310780205|ref|YP_003968537.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
 gi|309749528|gb|ADO84189.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
          Length = 66

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFIT    +E G DVF+H S +   G   L EG+ VT++  Q
Sbjct: 4  GTVKWFNQEKGFGFIT----SEDGTDVFVHFSQINKPGFKTLEEGEQVTFEITQ 53


>gi|254465282|ref|ZP_05078693.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
 gi|206686190|gb|EDZ46672.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
          Length = 68

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI P+   E G DVF+H SAV  +G+  L +   + Y+  +     K
Sbjct: 4  GTVKWFNTTKGYGFIEPD---EGGKDVFVHISAVERSGMTGLADNMKIGYELSEGRDGRK 60

Query: 65 YSAE 68
           +AE
Sbjct: 61 MAAE 64


>gi|42391858|dbj|BAD08701.1| cold shock domain protein 3 [Triticum aestivum]
          Length = 231

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI+P+   + G+D+F+H+SA+ S G  +L E   V ++ +  D +G
Sbjct: 6  KGTVKWFNVTKGFGFISPD---DGGEDLFVHQSAIKSDGYRSLNENDAVEFEIITGD-DG 61

Query: 64 KYSAENL 70
          +  A ++
Sbjct: 62 RTKASDV 68


>gi|21224260|ref|NP_630039.1| cold-shock domain-containing protein [Streptomyces coelicolor
          A3(2)]
 gi|256784655|ref|ZP_05523086.1| cold-shock domain-containing protein [Streptomyces lividans TK24]
 gi|289768539|ref|ZP_06527917.1| cold-shock domain-containing protein [Streptomyces lividans TK24]
 gi|2815334|emb|CAA16458.1| cold-shock domain protein [Streptomyces coelicolor A3(2)]
 gi|91199666|emb|CAI78021.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|96771713|emb|CAI78295.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|117164258|emb|CAJ87800.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|126347370|emb|CAJ89078.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|289698738|gb|EFD66167.1| cold-shock domain-containing protein [Streptomyces lividans TK24]
          Length = 67

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|261346879|ref|ZP_05974523.1| conserved domain protein [Providencia rustigianii DSM 4541]
 gi|282565065|gb|EFB70600.1| conserved domain protein [Providencia rustigianii DSM 4541]
          Length = 70

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI+P   T+   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFNSDKGFGFISP---TDGSKDVFVHFSAIQSDNFRTLDEGQKVEF-TIENGAKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|54025407|ref|YP_119649.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54016915|dbj|BAD58285.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 67

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +GS+KW+N +KG+GFI  +G    G DVF+H SA+  +G   L EGQ V ++  Q 
Sbjct: 3  QGSVKWFNGEKGFGFIAQDG---GGPDVFVHYSAIGGSGFKTLDEGQRVEFEIGQG 55


>gi|311694945|gb|ADP97818.1| cold shock, CspA [marine bacterium HP15]
          Length = 69

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI  +G    G DVF+H SA+ ++G   LTEGQ V +   Q     +
Sbjct: 7  GHVKWFNESKGFGFIAQDG----GSDVFVHYSAINASGFRTLTEGQQVQFTVTQGPKGPQ 62

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 63 --AENVTPV 69


>gi|227872733|ref|ZP_03991058.1| cold shock protein CspA [Oribacterium sinus F0268]
 gi|227841428|gb|EEJ51733.1| cold shock protein CspA [Oribacterium sinus F0268]
          Length = 65

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI    S E+G DVF+H S ++  G  +L EGQ V ++ V + A G
Sbjct: 2  KGTVKWFNNQKGYGFI----SDETGKDVFVHYSGLSGDGFKSLEEGQAVEFEVV-DGAKG 56

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 57 PQATNVVKL 65


>gi|115376123|ref|ZP_01463367.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310824812|ref|YP_003957170.1| Cold shock family protein, CspA [Stigmatella aurantiaca DW4/3-1]
 gi|115366846|gb|EAU65837.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397884|gb|ADO75343.1| Cold shock family protein, CspA [Stigmatella aurantiaca DW4/3-1]
          Length = 67

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+T +G    G+DVF H SA+   G   L EGQ V++D  +
Sbjct: 4  GTVKWFNDAKGFGFLTQDG---GGEDVFCHHSAINMDGFRTLAEGQKVSFDVTR 54


>gi|74316873|ref|YP_314613.1| cold-shock DNA-binding protein family protein [Thiobacillus
          denitrificans ATCC 25259]
 gi|74056368|gb|AAZ96808.1| Possible Cold-shock DNA-binding domain protein [Thiobacillus
          denitrificans ATCC 25259]
          Length = 68

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW++  KG+GFITP+   + G+DVF H SA+ + G   L EGQ V+++  Q
Sbjct: 4  GTVKWFSDAKGFGFITPD---DGGEDVFAHFSAIQTNGFKTLKEGQKVSFEVSQ 54


>gi|268568282|ref|XP_002640209.1| C. briggsae CBR-LIN-28 protein [Caenorhabditis briggsae]
          Length = 219

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS KW+N  KGYGF+  +    +G+D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 55  GSCKWFNVSKGYGFVIDDN---TGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110


>gi|312200500|ref|YP_004020561.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
 gi|311231836|gb|ADP84691.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
          Length = 68

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 7/72 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L EGQ V +D  Q    G+
Sbjct: 4  GTVKWFNSEKGFGFIAVDG---GGPDVFVHYSAIQTDGFRSLDEGQRVEFDIEQ----GQ 56

Query: 65 YSAENLKLVPKS 76
             +  K+ P S
Sbjct: 57 KGPQAGKVRPTS 68


>gi|257063443|ref|YP_003143115.1| cold-shock DNA-binding protein family [Slackia heliotrinireducens
          DSM 20476]
 gi|256791096|gb|ACV21766.1| cold-shock DNA-binding protein family [Slackia heliotrinireducens
          DSM 20476]
          Length = 67

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 7/72 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW++P+KGYGFI    S   G+++F+H S +   G   L EG  VT++ V   ANG
Sbjct: 3  EGTVKWFSPEKGYGFI----SQADGENLFVHFSEIQMDGYKTLEEGAKVTFE-VTEGANG 57

Query: 64 KYSAENLKLVPK 75
          K  A N  +VP+
Sbjct: 58 KKQASN--VVPQ 67


>gi|300690669|ref|YP_003751664.1| cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum
          PSI07]
 gi|299077729|emb|CBJ50367.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum
          PSI07]
          Length = 67

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+P+   E G+++F H SA+   G   L EGQ V ++  Q
Sbjct: 4  GTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMGGFKTLKEGQRVVFEVTQ 54


>gi|296390681|ref|ZP_06880156.1| cold-shock protein [Pseudomonas aeruginosa PAb1]
          Length = 204

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SG+D+F+H  A+   G   L EGQ V +  VQ D
Sbjct: 140 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 191


>gi|323342986|ref|ZP_08083217.1| cold shock protein CspA [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463050|gb|EFY08245.1| cold shock protein CspA [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 66

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +K++N +KGYGFIT EG    G D+F+H SA+ + G   L EGQ V+++ V+
Sbjct: 4  GKVKFFNAEKGYGFITIEG----GQDIFVHYSAIVADGYKTLEEGQEVSFEVVE 53


>gi|226313978|ref|YP_002773874.1| cold shock protein [Brevibacillus brevis NBRC 100599]
 gi|226096928|dbj|BAH45370.1| cold shock protein [Brevibacillus brevis NBRC 100599]
          Length = 68

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          +G +KW++ +KGYGFI  +G    G DVF+H SA+  AG  NL EG+ V ++ V
Sbjct: 3  QGKVKWFSKEKGYGFIERDG----GPDVFVHYSAITGAGYRNLEEGEQVVFEIV 52


>gi|59714277|ref|YP_207052.1| DNA-binding transcriptional regulator [Vibrio fischeri ES114]
 gi|197337532|ref|YP_002158749.1| hypothetical protein VFMJ11_A1204 [Vibrio fischeri MJ11]
 gi|59482525|gb|AAW88164.1| DNA-binding transcriptional regulator [Vibrio fischeri ES114]
 gi|197314784|gb|ACH64233.1| conserved domain protein [Vibrio fischeri MJ11]
          Length = 69

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 6  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 56


>gi|30249693|ref|NP_841763.1| cold shock DNA-binding domain-containing protein [Nitrosomonas
          europaea ATCC 19718]
 gi|30180730|emb|CAD85642.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718]
          Length = 67

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+  +E   D+F H SA+   G   L EGQ V+++  Q
Sbjct: 4  GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMTGFKTLKEGQKVSFEVTQ 54


>gi|302786020|ref|XP_002974781.1| hypothetical protein SELMODRAFT_58801 [Selaginella
          moellendorffii]
 gi|300157676|gb|EFJ24301.1| hypothetical protein SELMODRAFT_58801 [Selaginella
          moellendorffii]
          Length = 145

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P +G+GFITP+   +   D+F+H++++ + G  +L EG++V Y  V+   +G+
Sbjct: 1  GKVKWFSPTRGFGFITPD---DGSPDIFVHQTSIHAEGFRSLREGEIVEY-VVELGQDGR 56

Query: 65 YSAENL 70
            A N+
Sbjct: 57 MRAGNV 62


>gi|258516119|ref|YP_003192341.1| cold-shock DNA-binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257779824|gb|ACV63718.1| cold-shock DNA-binding domain protein [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 65

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N +KG+GFI  EG    G D+F+H SA+   G   L EGQ V ++ V+ +
Sbjct: 2  EGTVKWFNAEKGFGFIEQEG----GGDIFVHFSAIQGDGFKTLDEGQKVKFEVVEGN 54


>gi|119946712|ref|YP_944392.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119865316|gb|ABM04793.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           +G++KW+N  KG+GFI       SG DVF+H SA+AS G   L EGQ V +   Q
Sbjct: 5  EQGTVKWFNEAKGFGFI----EQASGPDVFVHFSAIASEGFKTLAEGQKVEFSVSQ 56


>gi|253688097|ref|YP_003017287.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|251754675|gb|ACT12751.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
          Length = 73

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    GDD+F H S +   G   L  GQ+V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQ 54


>gi|149378085|ref|ZP_01895807.1| cold shock protein [Marinobacter algicola DG893]
 gi|149357654|gb|EDM46154.1| cold shock protein [Marinobacter algicola DG893]
          Length = 66

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI  +G    G DVF+H SA+ ++G   LTEGQ V +   Q     +
Sbjct: 4  GHVKWFNESKGFGFIAQDG----GSDVFVHYSAINASGFRTLTEGQQVQFTVTQGPKGPQ 59

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 60 --AENVTPV 66


>gi|153003150|ref|YP_001377475.1| cold-shock DNA-binding domain-containing protein
          [Anaeromyxobacter sp. Fw109-5]
 gi|152026723|gb|ABS24491.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
          sp. Fw109-5]
          Length = 67

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFIT +     G+DVF H SA+   G  +L EGQ V +D V+
Sbjct: 4  GTVKWFNDAKGFGFITQD---NGGEDVFCHYSAIQGDGFKSLAEGQKVEFDVVK 54


>gi|40363759|dbj|BAD06324.1| putative glycine-rich protein [Triticum aestivum]
 gi|42391853|dbj|BAD08700.1| cold shock domain protein 2 [Triticum aestivum]
          Length = 205

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI+PE  +E   D+F+H+SA+ + G  +L E  +V ++ +  D +G
Sbjct: 6  KGTVKWFNVTKGFGFISPEDGSE---DLFVHQSAIKADGYRSLNENDVVEFEVITGD-DG 61

Query: 64 KYSAENL 70
          +  A ++
Sbjct: 62 RTKATDV 68


>gi|332993404|gb|AEF03459.1| stress response protein CspD [Alteromonas sp. SN2]
          Length = 72

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI PE   + G+D+F H S +   G  +L  GQ VTYD VQ    G 
Sbjct: 4  GKVKWFNNAKGFGFIVPE---DGGEDIFAHYSTIQMEGYRSLKAGQEVTYD-VQQGPKGL 59

Query: 65 YSAENL 70
          + AEN+
Sbjct: 60 H-AENI 64


>gi|312200428|ref|YP_004020489.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
 gi|311231764|gb|ADP84619.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
          Length = 67

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI+ +G    G DVF+H SA+ + G  +L EGQ V ++ VQ
Sbjct: 3  QGTVKWFNAEKGFGFISVDG---GGPDVFVHFSAILTDGYKSLDEGQSVQFEIVQ 54


>gi|262373766|ref|ZP_06067044.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
 gi|262311519|gb|EEY92605.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
          Length = 71

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KG+GFI      ESG DVF H S ++++G   L EGQ+V +   Q
Sbjct: 8  KGTVKWFNETKGFGFI----QQESGPDVFAHFSEISNSGFKTLFEGQMVEFSIAQ 58


>gi|183598367|ref|ZP_02959860.1| hypothetical protein PROSTU_01759 [Providencia stuartii ATCC
          25827]
 gi|188020543|gb|EDU58583.1| hypothetical protein PROSTU_01759 [Providencia stuartii ATCC
          25827]
          Length = 71

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +H G +KW++ +KGYGFI+P      GDD+F+ R ++A+  + +L EGQ V +   +N
Sbjct: 5  LHMGRVKWFDANKGYGFISP---INGGDDIFVTRKSIANKKIKSLFEGQNVEFSVTRN 59


>gi|328951178|ref|YP_004368513.1| cold-shock DNA-binding domain protein [Marinithermus
          hydrothermalis DSM 14884]
 gi|328451502|gb|AEB12403.1| cold-shock DNA-binding domain protein [Marinithermus
          hydrothermalis DSM 14884]
          Length = 73

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N  KGYGFI  EG +    DVF+H +A+   G   L EG +VT++      
Sbjct: 1  MQRGRVKWFNATKGYGFIEREGDS----DVFVHYTAINGTGFRTLNEGDIVTFEVEPGRP 56

Query: 62 NGKYSAENLKLV 73
               A N+ +V
Sbjct: 57 GKGPQATNVTVV 68


>gi|300312332|ref|YP_003776424.1| cold shock-like transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
 gi|300075117|gb|ADJ64516.1| cold shock-like transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
          Length = 68

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+   E G+D+F H SA+ S G  +L E Q V+++
Sbjct: 4  GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQSNGFKSLKENQRVSFE 51


>gi|197285535|ref|YP_002151407.1| cold shock-like protein [Proteus mirabilis HI4320]
 gi|227356030|ref|ZP_03840421.1| cold shock family protein [Proteus mirabilis ATCC 29906]
 gi|194683022|emb|CAR43496.1| cold shock-like protein [Proteus mirabilis HI4320]
 gi|227163807|gb|EEI48715.1| cold shock family protein [Proteus mirabilis ATCC 29906]
          Length = 70

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +  ++N A G
Sbjct: 6  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFT-IENGAKG 61

Query: 64 KYSA 67
            +A
Sbjct: 62 PAAA 65


>gi|20302392|emb|CAC80094.1| cold shock protein [Staphylococcus aureus]
          Length = 66

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DV +H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVLVHFSAINQDGYKSLEEGQAVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|70728544|ref|YP_258293.1| cold-shock domain-contain protein [Pseudomonas fluorescens Pf-5]
 gi|68342843|gb|AAY90449.1| cold-shock domain family protein [Pseudomonas fluorescens Pf-5]
          Length = 82

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI  EG    G DVF+H  A+   G  +LTEGQ V Y  V+
Sbjct: 20 GNVKWFNDAKGYGFIQREG----GADVFVHYRAIRGEGHRSLTEGQQVEYAVVE 69


>gi|107100418|ref|ZP_01364336.1| hypothetical protein PaerPA_01001443 [Pseudomonas aeruginosa PACS2]
          Length = 204

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SG+D+F+H  A+   G   L EGQ V +  VQ D
Sbjct: 140 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 191


>gi|254448335|ref|ZP_05061796.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium
          HTCC5015]
 gi|198261948|gb|EDY86232.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium
          HTCC5015]
          Length = 69

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N DKG+GFI  EG    G DVF+H SA+   G  +L EGQ V+++
Sbjct: 7  GTVKWFNDDKGFGFIQQEG----GPDVFVHFSAINGTGRRSLAEGQAVSFE 53


>gi|188576172|ref|YP_001913101.1| major cold shock protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520624|gb|ACD58569.1| major cold shock protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 61

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +KW+N  KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 1  MKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQ 48


>gi|37725747|gb|AAO32342.1| cold shock protein 2 [Streptomyces sp. AA8321]
          Length = 65

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q VT+D  Q
Sbjct: 4  GTVKWLNAEKGFGFIAQDGG---GPDVFVHYSAINASGFRSLEENQQVTFDVTQ 54


>gi|89093057|ref|ZP_01166008.1| Cold shock protein [Oceanospirillum sp. MED92]
 gi|89082707|gb|EAR61928.1| Cold shock protein [Oceanospirillum sp. MED92]
          Length = 69

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 6/67 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI      +SG DVF H SA+A  G  +L EGQ V +   Q     +
Sbjct: 7  GTVKWFNDEKGFGFI----EQQSGPDVFAHFSAIAGDGFKSLQEGQQVEFTVAQGQKGPQ 62

Query: 65 YSAENLK 71
            AEN++
Sbjct: 63 --AENIR 67


>gi|312883132|ref|ZP_07742863.1| cold shock protein CspE [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369292|gb|EFP96813.1| cold shock protein CspE [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 69

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V  ++V +     
Sbjct: 7  GTVKWFNETKGFGFI----QQENGPDVFAHFSAITGDGFRTLVEGQKV--EFVVSQGQKG 60

Query: 65 YSAENLKLV 73
            AEN+K+V
Sbjct: 61 PQAENIKVV 69


>gi|290475740|ref|YP_003468629.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Xenorhabdus bovienii
          SS-2004]
 gi|289175062|emb|CBJ81865.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Xenorhabdus bovienii
          SS-2004]
          Length = 69

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP    +   DVF+H SA+ + G   L+EGQ V ++ +QN   G 
Sbjct: 6  GIVKWFNESKGFGFITP---ADGSKDVFVHFSAIMNDGFKTLSEGQQVEFE-IQNGPKGP 61

Query: 65 YSA 67
           +A
Sbjct: 62 AAA 64


>gi|237727875|ref|ZP_04558356.1| major cold shock protein CSPA2 [Citrobacter sp. 30_2]
 gi|226910432|gb|EEH96350.1| major cold shock protein CSPA2 [Citrobacter sp. 30_2]
          Length = 70

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ S     L EGQ V +  V+N A G
Sbjct: 7  GLVKWFNSDKGFGFITPQDGSK---DVFVHFSAIQSNDFKTLDEGQKVEFS-VENGAKG 61


>gi|54303445|ref|YP_133438.1| putative cold shock protein [Photobacterium profundum SS9]
 gi|46916875|emb|CAG23638.1| putative cold shock protein [Photobacterium profundum SS9]
          Length = 104

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 41 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 91


>gi|116048886|ref|YP_792313.1| cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313105848|ref|ZP_07792111.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
 gi|115584107|gb|ABJ10122.1| probable cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310878613|gb|EFQ37207.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
          Length = 204

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SG+D+F+H  A+   G   L EGQ V +  VQ D
Sbjct: 140 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 191


>gi|224369509|ref|YP_002603673.1| CspA [Desulfobacterium autotrophicum HRM2]
 gi|223692226|gb|ACN15509.1| CspA [Desulfobacterium autotrophicum HRM2]
          Length = 66

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      E+G+DVF+H S + ++G  +L EG  VT+D  Q
Sbjct: 4  GTVKWFNDSKGFGFI----EQENGEDVFVHHSGINASGFKSLNEGDKVTFDIEQ 53


>gi|297196882|ref|ZP_06914279.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|197711514|gb|EDY55548.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
          Length = 67

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   LTEG+ VT+D  Q
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSEIAANGYRELTEGEHVTFDIGQ 54


>gi|117619984|ref|YP_857934.1| hypothetical protein AHA_3450 [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|117561391|gb|ABK38339.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
          Length = 69

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI        G DVF+H S++ SAG   L EGQ V +   Q   
Sbjct: 4  IRTGQVKWFNETKGFGFI----EQSQGPDVFVHFSSIQSAGFKTLAEGQKVQFTVTQGKK 59

Query: 62 NGKYSAENLKLV 73
            +  AEN+ L+
Sbjct: 60 GPQ--AENVTLL 69


>gi|290474928|ref|YP_003467812.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Xenorhabdus bovienii
          SS-2004]
 gi|300722620|ref|YP_003711910.1| cold shock protein, transcription antiterminator [Xenorhabdus
          nematophila ATCC 19061]
 gi|289174245|emb|CBJ81034.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Xenorhabdus bovienii
          SS-2004]
 gi|297629127|emb|CBJ89717.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Xenorhabdus nematophila
          ATCC 19061]
          Length = 70

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +  ++N A G
Sbjct: 6  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFT-IENGAKG 61

Query: 64 KYSA 67
            +A
Sbjct: 62 PAAA 65


>gi|229016986|ref|ZP_04173906.1| Cold shock-like protein cspB [Bacillus cereus AH1273]
 gi|229023167|ref|ZP_04179678.1| Cold shock-like protein cspB [Bacillus cereus AH1272]
 gi|228738092|gb|EEL88577.1| Cold shock-like protein cspB [Bacillus cereus AH1272]
 gi|228744257|gb|EEL94339.1| Cold shock-like protein cspB [Bacillus cereus AH1273]
          Length = 65

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  +GS    DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIEMDGS----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|227112016|ref|ZP_03825672.1| cold shock-like protein [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
          Length = 73

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    GDD+F H S +   G   L  GQ+V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQ 54


>gi|163839238|ref|YP_001623643.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
 gi|162952714|gb|ABY22229.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
          Length = 67

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KG+GFIT +G    G DVF+H +A+   G  +L EGQ V +D  Q 
Sbjct: 3  QGTVKWFNAEKGFGFITVDG---DGGDVFVHWAAIEMDGYRSLEEGQRVEFDIGQG 55


>gi|152987217|ref|YP_001349896.1| cold-shock protein [Pseudomonas aeruginosa PA7]
 gi|150962375|gb|ABR84400.1| probable cold-shock protein [Pseudomonas aeruginosa PA7]
          Length = 203

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SG+D+F+H  A+   G   L EGQ V +  VQ D
Sbjct: 139 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 190


>gi|307546402|ref|YP_003898881.1| cold shock protein CspA [Halomonas elongata DSM 2581]
 gi|307218426|emb|CBV43696.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas
           elongata DSM 2581]
          Length = 154

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +KW+N +KGYGFIT +    SG+DVF+H  A+   G   L EGQ V Y   +N+
Sbjct: 91  GEVKWFNVNKGYGFITRD----SGEDVFVHFRAIRGRGHRTLAEGQKVKYQVSRNE 142


>gi|299535166|ref|ZP_07048491.1| cold shock protein [Lysinibacillus fusiformis ZC1]
 gi|298729483|gb|EFI70033.1| cold shock protein [Lysinibacillus fusiformis ZC1]
          Length = 66

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N +KGYGFI      + G+DVF+H + +   G   L EGQ V++D V+
Sbjct: 1  MQQGIVKWFNNEKGYGFI----ECDDGEDVFVHFTGIQEEGFRTLEEGQKVSFDVVE 53


>gi|271965975|ref|YP_003340171.1| cold-shock DNA-binding domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270509150|gb|ACZ87428.1| putative cold-shock DNA-binding domain protein [Streptosporangium
          roseum DSM 43021]
          Length = 67

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIAAQGYRELQEGQKVSFDITQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|227329249|ref|ZP_03833273.1| cold shock-like protein [Pectobacterium carotovorum subsp.
          carotovorum WPP14]
          Length = 73

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    GDD+F H S +   G   L  GQ+V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQ 54


>gi|71725901|gb|AAZ39069.1| cold shock protein [Exiguobacterium undae]
          Length = 69

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 5/63 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N ++G+GFI      ESGDDVF+H SA+ + G  +L EGQ V+++ V+    G 
Sbjct: 8  GTVKWFNLEEGFGFI----ERESGDDVFVHFSAIQTDGFKSLDEGQEVSFE-VEEGQRGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 QAA 65


>gi|115377442|ref|ZP_01464645.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365540|gb|EAU64572.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 100

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFIT +G    G+DVF H +A+   G   L EGQ V +D  +
Sbjct: 37 GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLQEGQKVQFDVAR 87


>gi|71066401|ref|YP_265128.1| cold-shock DNA-binding protein family protein [Psychrobacter
          arcticus 273-4]
 gi|93006957|ref|YP_581394.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          cryohalolentis K5]
 gi|71039386|gb|AAZ19694.1| cold-shock DNA-binding protein family [Psychrobacter arcticus
          273-4]
 gi|92394635|gb|ABE75910.1| cold-shock DNA-binding protein family [Psychrobacter
          cryohalolentis K5]
          Length = 69

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           +G++KW+N  KG+GFI P    E+G DVF H S +  +G   L EGQ V +   Q
Sbjct: 5  QKGTVKWFNEAKGFGFIAP----ETGADVFAHYSEITGSGFKTLAEGQEVEFTVTQ 56


>gi|302760539|ref|XP_002963692.1| hypothetical protein SELMODRAFT_451445 [Selaginella
          moellendorffii]
 gi|300168960|gb|EFJ35563.1| hypothetical protein SELMODRAFT_451445 [Selaginella
          moellendorffii]
          Length = 184

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P +G+GFITP+   +   D+F+H++++ + G  +L EG++V Y  V+   +G+
Sbjct: 17 GKVKWFSPTRGFGFITPD---DGSPDIFVHQTSIHAEGFRSLREGEIVEY-VVELGQDGR 72

Query: 65 YSAENL 70
            A N+
Sbjct: 73 MRAGNV 78


>gi|295677819|ref|YP_003606343.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|295437662|gb|ADG16832.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
          Length = 67

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+G    G+D+F H S +   G   L E Q VT++ V+   
Sbjct: 1  METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRVDGFKTLQENQKVTFE-VKTGP 56

Query: 62 NGKYSAENLKLV 73
           GK +A N+K V
Sbjct: 57 KGKQAA-NIKPV 67


>gi|148265731|ref|YP_001232437.1| cold-shock DNA-binding domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146399231|gb|ABQ27864.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
          Rf4]
          Length = 66

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI      ++G+DVF+H SA+   G  +LTEG+ V++D V N   G
Sbjct: 3  QGKVKWFNDAKGFGFI----EQDNGEDVFVHFSAITGEGFKSLTEGEAVSFD-VTNGPKG 57

Query: 64 KYSAENLKLV 73
             A N+K +
Sbjct: 58 -LQAANVKKI 66


>gi|126650270|ref|ZP_01722498.1| cold shock protein [Bacillus sp. B14905]
 gi|126592920|gb|EAZ86902.1| cold shock protein [Bacillus sp. B14905]
          Length = 66

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G++KW+N +KG+GFI  EG    G+DVF+H SA+ + G   L EGQ V +
Sbjct: 3  QGTVKWFNAEKGFGFIAVEG----GNDVFVHFSAIQTDGFKTLEEGQKVEF 49


>gi|319949463|ref|ZP_08023522.1| cold-shock DNA-binding domain protein [Dietzia cinnamea P4]
 gi|319436867|gb|EFV91928.1| cold-shock DNA-binding domain protein [Dietzia cinnamea P4]
          Length = 67

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFI P+  +    DVF H SA+  +G  +L E Q V++D  Q  A G 
Sbjct: 4  GTVKWFNADKGFGFIAPDDGSA---DVFAHFSAIQGSGYRSLEENQQVSFDVAQG-AKG- 58

Query: 65 YSAENL 70
            AEN+
Sbjct: 59 LQAENI 64


>gi|209693681|ref|YP_002261609.1| cold shock protein [Aliivibrio salmonicida LFI1238]
 gi|208007632|emb|CAQ77736.1| cold shock protein [Aliivibrio salmonicida LFI1238]
          Length = 69

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 6  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLKEGQKVSFEVEQ 56


>gi|116669038|ref|YP_829971.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
          FB24]
 gi|116609147|gb|ABK01871.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
          Length = 67

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI P+   +   DVF H SA+A++G  +L E Q V +D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAPD---DGSADVFAHYSAIATSGYRSLDENQKVEFDVTQGPKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENIR 65


>gi|91777186|ref|YP_552394.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|91689846|gb|ABE33044.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
          Length = 77

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G+D+F H S V  +G  +L E Q VT++ V+    GK
Sbjct: 14 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEVQGSGFKSLQENQKVTFE-VKQGPKGK 69

Query: 65 YSA 67
           +A
Sbjct: 70 QAA 72


>gi|309779238|ref|ZP_07674001.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
 gi|308922042|gb|EFP67676.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
          Length = 67

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+G    G D+F H S +  +G   L +GQ VT++  Q     +
Sbjct: 4  GTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVTFEVKQGPKGLQ 60

Query: 65 YSA 67
           SA
Sbjct: 61 ASA 63


>gi|239981276|ref|ZP_04703800.1| cold shock protein [Streptomyces albus J1074]
 gi|291453133|ref|ZP_06592523.1| cold shock protein [Streptomyces albus J1074]
 gi|291356082|gb|EFE82984.1| cold shock protein [Streptomyces albus J1074]
          Length = 67

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +++ G   L EGQ V++D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNISAQGFRELIEGQKVSFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|126654483|ref|ZP_01726209.1| cold shock protein [Bacillus sp. B14905]
 gi|169828303|ref|YP_001698461.1| cold shock protein [Lysinibacillus sphaericus C3-41]
 gi|299537124|ref|ZP_07050427.1| cold shock protein [Lysinibacillus fusiformis ZC1]
 gi|126589048|gb|EAZ83279.1| cold shock protein [Bacillus sp. B14905]
 gi|168992791|gb|ACA40331.1| Cold shock protein [Lysinibacillus sphaericus C3-41]
 gi|298727365|gb|EFI67937.1| cold shock protein [Lysinibacillus fusiformis ZC1]
          Length = 66

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G   L EGQ V ++ V  D 
Sbjct: 1  MKQGTVKWFNSEKGFGFIEVEGE----NDVFVHFSAIQGEGFKTLDEGQKVEFEVV--DG 54

Query: 62 NGKYSAENL 70
          N    A N+
Sbjct: 55 NRGPQAANV 63


>gi|194335526|ref|YP_002017320.1| cold-shock DNA-binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308003|gb|ACF42703.1| cold-shock DNA-binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 69

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V  +  Q
Sbjct: 6  EGTVKWFNEEKGYGFIEQKG----GKDVFVHHSAINGTGRKTLVEGQKVMMEVTQ 56


>gi|255587236|ref|XP_002534193.1| cold shock domain containing proteins, putative [Ricinus
          communis]
 gi|223525720|gb|EEF28187.1| cold shock domain containing proteins, putative [Ricinus
          communis]
          Length = 67

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   E G+D+F H S + + G  +L E Q V+++ V+    GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---EGGEDLFAHFSEIKTEGFKSLQENQKVSFE-VKMGPKGK 59

Query: 65 YSAENLKLV 73
           +A N+K V
Sbjct: 60 QAA-NIKPV 67


>gi|254244622|ref|ZP_04937944.1| hypothetical protein PA2G_05489 [Pseudomonas aeruginosa 2192]
 gi|37955684|gb|AAP22523.1| CspA [Pseudomonas aeruginosa]
 gi|126198000|gb|EAZ62063.1| hypothetical protein PA2G_05489 [Pseudomonas aeruginosa 2192]
          Length = 69

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 5/59 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N  KG+GFITP    ESG DVF+H   + ++G  +L EGQ V++ +V   A G
Sbjct: 7  GTVKWFNEVKGFGFITP----ESGADVFVHFRQIEASGYKSLDEGQRVSF-FVTAGAKG 60


>gi|127512543|ref|YP_001093740.1| cold-shock DNA-binding domain-containing protein [Shewanella
          loihica PV-4]
 gi|126637838|gb|ABO23481.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4]
          Length = 68

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI      ESG DVF+H  A+ S G   L EGQ V +   Q     +
Sbjct: 6  GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 62 --AENVTVI 68


>gi|261821256|ref|YP_003259362.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
 gi|261605269|gb|ACX87755.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
          Length = 73

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    GDD+F H S +   G   L  GQ+V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQ 54


>gi|271970090|ref|YP_003344286.1| cold-shock DNA-binding domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270513265|gb|ACZ91543.1| putative cold-shock DNA-binding domain protein [Streptosporangium
          roseum DSM 43021]
          Length = 66

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N DKGYGFI  +G    G DVF+H SA+   G   L +GQ V ++  Q     
Sbjct: 3  QGTVKWFNADKGYGFIAVDG----GKDVFVHYSAIMMDGYRALEQGQRVEFEITQGQKGP 58

Query: 64 KYSAENLKLV 73
          +  AE+++ V
Sbjct: 59 Q--AESVRAV 66


>gi|329937163|ref|ZP_08286762.1| putative cold shock protein [Streptomyces griseoaurantiacus M045]
 gi|329303444|gb|EGG47330.1| putative cold shock protein [Streptomyces griseoaurantiacus M045]
          Length = 62

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 7/68 (10%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ VT+D  Q    G+  
Sbjct: 1  MKWFNSEKGFGFIEQDGG---GADVFAHYSNIATSGFRELQEGQKVTFDVTQ----GQKG 53

Query: 67 AENLKLVP 74
           +   +VP
Sbjct: 54 PQAENIVP 61


>gi|238898015|ref|YP_002923695.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Candidatus Hamiltonella
          defensa 5AT (Acyrthosiphon pisum)]
 gi|229465773|gb|ACQ67547.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Candidatus Hamiltonella
          defensa 5AT (Acyrthosiphon pisum)]
          Length = 69

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G +KW+N  KG+GFITP+ +++   DVF+H SA+  +G   L EGQ V ++
Sbjct: 5  KGKVKWFNESKGFGFITPDDNSK---DVFVHFSAIQDSGFKTLAEGQGVEFE 53


>gi|296127882|ref|YP_003635132.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
 gi|296019697|gb|ADG72933.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
          Length = 67

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI P   ++   DVF H SA+AS+G   L E Q V ++  Q
Sbjct: 4  GTVKWFNAEKGFGFIAP---SDGSADVFAHYSAIASSGFRTLEENQQVEFEVTQ 54


>gi|169828200|ref|YP_001698358.1| major cold shock protein [Lysinibacillus sphaericus C3-41]
 gi|168992688|gb|ACA40228.1| Major cold shock protein [Lysinibacillus sphaericus C3-41]
          Length = 66

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G++KW+N +KG+GFI  EG    G+DVF+H SA+ + G   L EGQ V +
Sbjct: 3  QGTVKWFNAEKGFGFIAVEG----GNDVFVHFSAIQTDGFKTLEEGQKVEF 49


>gi|160878713|ref|YP_001557681.1| cold-shock DNA-binding domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160427379|gb|ABX40942.1| cold-shock DNA-binding domain protein [Clostridium
          phytofermentans ISDg]
          Length = 66

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +++G++KW+N  KG+GFI    S E G+DVF+H S +   G  +L EGQ V ++ VQ
Sbjct: 1  MNKGTVKWFNNQKGFGFI----SDEQGNDVFVHYSGLNMDGFKSLEEGQEVAFEVVQ 53


>gi|239980769|ref|ZP_04703293.1| cold-shock domain-containing protein [Streptomyces albus J1074]
 gi|291452626|ref|ZP_06592016.1| cold-shock domain-containing protein [Streptomyces albus J1074]
 gi|291355575|gb|EFE82477.1| cold-shock domain-containing protein [Streptomyces albus J1074]
          Length = 67

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++P +G+GFIT +G    G DVF H S +A+     L EGQ VT+D V +     
Sbjct: 4  GTVKWFHPARGFGFITQDG---GGADVFAHFSNIAAQDSLELLEGQKVTFDIVMSPKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|156936422|ref|YP_001440338.1| major cold shock protein [Cronobacter sakazakii ATCC BAA-894]
 gi|156534676|gb|ABU79502.1| hypothetical protein ESA_04323 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 70

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFITP+  ++   DVF+H SA+ + G   L EGQ V++  V++ A G 
Sbjct: 7  GLVKWFNAEKGFGFITPDNGSK---DVFVHFSAIQNNGFKTLEEGQKVSFS-VESGAKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|119946714|ref|YP_944394.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119865318|gb|ABM04795.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           +G++KW+N  KG+GFI       SG DVF+H SA+AS G   L EGQ V +   Q
Sbjct: 5  EQGTVKWFNEAKGFGFI----EQASGPDVFVHFSAIASEGFKTLAEGQKVEFTVSQ 56


>gi|134300024|ref|YP_001113520.1| cold-shock DNA-binding domain-containing protein
          [Desulfotomaculum reducens MI-1]
 gi|134052724|gb|ABO50695.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens
          MI-1]
          Length = 65

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     +E G DVF+H SA+ S G   L EG+ V ++ ++    G
Sbjct: 2  QGKVKWFNANKGYGFI----ESEIGTDVFVHYSAIQSEGYRTLEEGEPVDFEIIEG-TRG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|270264889|ref|ZP_06193153.1| Cold shock-like protein CspJ [Serratia odorifera 4Rx13]
 gi|270041187|gb|EFA14287.1| Cold shock-like protein CspJ [Serratia odorifera 4Rx13]
          Length = 70

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ S+    L EGQ V +  V++ A G 
Sbjct: 7  GLVKWFNADKGFGFITPQDGSK---DVFVHFSAIQSSDFKTLDEGQKVEFS-VESGAKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 SAVNVIAL 70


>gi|229526207|ref|ZP_04415611.1| cold shock protein CspG [Vibrio cholerae bv. albensis VL426]
 gi|229336365|gb|EEO01383.1| cold shock protein CspG [Vibrio cholerae bv. albensis VL426]
          Length = 70

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFI+ +     G DVF+H  ++ S G   L EGQ V++  V+ D  G 
Sbjct: 7  GSVKWFNETKGFGFISQD---NGGQDVFVHFKSIVSEGFKTLAEGQRVSFT-VEQDKKGP 62

Query: 65 YSAENLKL 72
           +A+   L
Sbjct: 63 QAAQVTAL 70


>gi|160894411|ref|ZP_02075187.1| hypothetical protein CLOL250_01963 [Clostridium sp. L2-50]
 gi|156863722|gb|EDO57153.1| hypothetical protein CLOL250_01963 [Clostridium sp. L2-50]
          Length = 71

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KGYGFI+   + +   DVF+H SA+   G   L EGQ VT+D  ++  
Sbjct: 1  MNNGTVKWFNAEKGYGFIS---NNDGSGDVFVHFSAIQGEGYKTLVEGQQVTFDTEEDPK 57

Query: 62 NG-KYSAENLKLV 73
           G +  A N+ +V
Sbjct: 58 GGSRTRATNVVIV 70


>gi|256374593|ref|YP_003098253.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
 gi|255918896|gb|ACU34407.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
          Length = 68

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EG  V ++ +Q   +G+
Sbjct: 4  GTVKWFNSEKGYGFIAADG----GPDVFVHYSAIMMDGFRTLAEGDRVEFE-IQAGRDGR 58

Query: 65 YSAENLK 71
            A +++
Sbjct: 59 SQASDVR 65


>gi|89074299|ref|ZP_01160789.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|90578632|ref|ZP_01234442.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|89050003|gb|EAR55537.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|90439465|gb|EAS64646.1| putative Cold shock-like protein [Vibrio angustum S14]
          Length = 69

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+A  G  +L EGQ V++D  Q
Sbjct: 6  GIVKWFNDEKGFGFITQD---NGGADVFVHFRAIAGEGFKSLAEGQKVSFDVEQ 56


>gi|323934238|gb|EGB30662.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1520]
          Length = 71

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFNSDKGFGFISP---ADGSKDVFVHFSAIQSNNFRTLEEGQQVEFS-IENGAKGP 62

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 63 AAANVVAL 70


>gi|295394500|ref|ZP_06804723.1| cold shock protein CspA [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972679|gb|EFG48531.1| cold shock protein CspA [Brevibacterium mcbrellneri ATCC 49030]
          Length = 67

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N +KGYGFIT +GS +   D+F+H S +   G  +L EGQ V ++  Q D
Sbjct: 3  QGTVKWFNAEKGYGFITVDGSDQ---DIFVHYSEIQMDGYRSLQEGQQVEFNVGQGD 56


>gi|294139961|ref|YP_003555939.1| cold shock-like protein cspE [Shewanella violacea DSS12]
 gi|293326430|dbj|BAJ01161.1| cold shock-like protein cspE [Shewanella violacea DSS12]
          Length = 68

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58
          +G++KW+N DKG+GFITPE  ++   D+F+H S + S G +  L +GQ V Y+  Q
Sbjct: 3  KGTVKWFNADKGFGFITPEDGSK---DLFVHHSEIQSGGDYATLNDGQAVEYEVGQ 55


>gi|269139181|ref|YP_003295882.1| cold shock protein [Edwardsiella tarda EIB202]
 gi|267984842|gb|ACY84671.1| cold shock protein [Edwardsiella tarda EIB202]
 gi|304559100|gb|ADM41764.1| Cold shock protein [Edwardsiella tarda FL6-60]
          Length = 69

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP    +   DVF+H SA+ + G   L EGQ V +  +Q+   G 
Sbjct: 6  GQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQNDGFKTLAEGQQVEFS-IQDSPRGP 61

Query: 65 YSAENLKL 72
           +A+ + L
Sbjct: 62 AAADVVAL 69


>gi|78485401|ref|YP_391326.1| cold-shock DNA-binding domain-containing protein [Thiomicrospira
          crunogena XCL-2]
 gi|78363687|gb|ABB41652.1| cold-shock DNA-binding protein family [Thiomicrospira crunogena
          XCL-2]
          Length = 68

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      ESG DVF H SA+ S+G   L EGQ V  ++   D    
Sbjct: 6  GTVKWFNESKGFGFI----EQESGPDVFAHFSAIVSSGFKTLAEGQKV--EFTVTDGPKG 59

Query: 65 YSAENL 70
            AEN+
Sbjct: 60 PQAENI 65


>gi|310823940|ref|YP_003956298.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1]
 gi|309397012|gb|ADO74471.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1]
          Length = 67

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFIT +G    G+DVF H +A+   G   L EGQ V +D  +
Sbjct: 4  GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLQEGQKVQFDVAR 54


>gi|300723585|ref|YP_003712890.1| cold shock protein, transcription antiterminator [Xenorhabdus
          nematophila ATCC 19061]
 gi|297630107|emb|CBJ90744.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Xenorhabdus nematophila
          ATCC 19061]
          Length = 69

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP    +   DVF+H SA+   G   L+EGQ V ++ +Q+   G 
Sbjct: 6  GTVKWFNESKGFGFITP---ADGSKDVFVHFSAIVKDGFKTLSEGQQVEFE-IQDGPKGP 61

Query: 65 YSA 67
           +A
Sbjct: 62 AAA 64


>gi|145225802|ref|YP_001136480.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          gilvum PYR-GCK]
 gi|315442494|ref|YP_004075373.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
 gi|145218288|gb|ABP47692.1| cold-shock DNA-binding protein family [Mycobacterium gilvum
          PYR-GCK]
 gi|315260797|gb|ADT97538.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
          Length = 67

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 38/55 (69%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N DKG+GFI P+ ++E   DVF+H S++  +G  +L E Q V ++  Q
Sbjct: 3  QGTVKWFNGDKGFGFIAPDNASE---DVFVHYSSITGSGFKSLDENQRVEFEIEQ 54


>gi|15894094|ref|NP_347443.1| cold shock protein [Clostridium acetobutylicum ATCC 824]
 gi|15023696|gb|AAK78783.1|AE007596_4 Cold shock protein [Clostridium acetobutylicum ATCC 824]
 gi|325508221|gb|ADZ19857.1| Cold shock protein [Clostridium acetobutylicum EA 2018]
          Length = 65

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFIT     E G+DVF H S +   G   L EGQ V+YD V+      
Sbjct: 3  GTVKWFNGEKGFGFITG----EDGNDVFAHYSQINVDGYKTLEEGQKVSYDVVKGPKG-- 56

Query: 65 YSAENLKL 72
            AEN+ L
Sbjct: 57 LQAENITL 64


>gi|327440557|dbj|BAK16922.1| cold shock protein [Solibacillus silvestris StLB046]
          Length = 66

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  EG    G+DVF H SA+   G  +L EGQ V ++ +++   G
Sbjct: 3  QGTVKWFNAEKGFGFIEVEG----GNDVFAHFSAIQGEGFKSLDEGQKVEFE-IEDGQRG 57

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 58 PQATNIVKL 66


>gi|293395718|ref|ZP_06640000.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291421655|gb|EFE94902.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 69

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP    +   DVF+H SA+ S G   L EGQ V +  +Q+   G 
Sbjct: 6  GHVKWFNESKGFGFITP---ADGSKDVFVHFSAIVSDGFKTLAEGQQVEFS-IQDSQRGP 61

Query: 65 YSAENLKL 72
           +A  + +
Sbjct: 62 AAANVVAI 69


>gi|297563398|ref|YP_003682372.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296847846|gb|ADH69866.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 67

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S + + G   L EGQ V +D V   A G 
Sbjct: 4  GTVKWFNGEKGFGFIEQDG---GGPDVFAHYSNIQATGYRELAEGQAVQFDAVAG-AKGP 59

Query: 65 YSAENLKLV 73
            AEN+ LV
Sbjct: 60 -QAENITLV 67


>gi|297204693|ref|ZP_06922090.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|197710764|gb|EDY54798.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
          Length = 67

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D         
Sbjct: 4  GTVKWFNAAKGFGFIEQDGG---GADVFAHFSNIAAQGFRELLEGQKVTFDIAAGQKG-- 58

Query: 65 YSAENLKL 72
           +AEN+ L
Sbjct: 59 PTAENIVL 66


>gi|91223643|ref|ZP_01258908.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
 gi|91191729|gb|EAS77993.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
          Length = 70

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+     G D+F+H  ++ S G   L+EGQ V+  +V    N  
Sbjct: 7  GLVKWFNESKGFGFITPD---NGGSDLFVHFKSIVSDGFKTLSEGQKVS--FVVEQGNKG 61

Query: 65 YSAENLKLV 73
            A+N+ LV
Sbjct: 62 PQADNVTLV 70


>gi|52220784|ref|YP_086797.1| putative cold shock protein [Lactobacillus plantarum]
 gi|254555218|ref|YP_003061635.1| cold shock protein CspL [Lactobacillus plantarum JDM1]
 gi|300766776|ref|ZP_07076690.1| cold-shock protein [Lactobacillus plantarum subsp. plantarum ATCC
          14917]
 gi|21541531|gb|AAM61873.1|AF508808_2 cold shock protein [Lactobacillus plantarum]
 gi|51965675|emb|CAF32413.1| putative cold shock protein [Lactobacillus plantarum]
 gi|254044145|gb|ACT60938.1| cold shock protein CspL [Lactobacillus plantarum JDM1]
 gi|300495652|gb|EFK30806.1| cold-shock protein [Lactobacillus plantarum subsp. plantarum ATCC
          14917]
          Length = 66

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N DKG+GFIT  GS     DVF+H S++ + G  +L EGQ V+Y+  Q D
Sbjct: 1  MQSGTVKWFNADKGFGFIT--GSDNK--DVFVHFSSIQTDGFKSLDEGQKVSYEVEQGD 55


>gi|253698845|ref|YP_003020034.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
 gi|251773695|gb|ACT16276.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
          Length = 66

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N  KG+GFI      E+G+DVF+H SA+   G  +L EG  VT+D  Q
Sbjct: 3  KGVVKWFNDSKGFGFI----EQENGEDVFVHFSAIQGEGFKSLAEGDSVTFDVQQ 53


>gi|119945641|ref|YP_943321.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119864245|gb|ABM03722.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           +G++KW+N  KG+GFI       SG DVF+H SA+AS G   L EGQ V +   Q
Sbjct: 5  EQGTVKWFNEAKGFGFI----EQASGPDVFVHFSAIASEGFKTLAEGQKVEFTVSQ 56


>gi|320353121|ref|YP_004194460.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
          DSM 2032]
 gi|320121623|gb|ADW17169.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
          DSM 2032]
          Length = 67

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +G    G DVF+H SA+ + G  +L EG+ V+++ V + A G 
Sbjct: 4  GTVKWFNDSKGFGFIAQDG----GKDVFVHHSAIQADGFKSLQEGERVSFNVV-DGAKGP 58

Query: 65 YSAENLK 71
           +A  +K
Sbjct: 59 AAANVIK 65


>gi|281490768|ref|YP_003352748.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|281374537|gb|ADA64058.1| Cold-shock protein [Lactococcus lactis subsp. lactis KF147]
          Length = 91

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++  G++KW+N  KG+GFIT    +E G D+F H SA+ S G  +L EGQ V +D
Sbjct: 25 IMANGTVKWFNATKGFGFIT----SEDGQDLFAHFSAIQSDGFKSLDEGQKVEFD 75


>gi|109898691|ref|YP_661946.1| cold-shock DNA-binding domain-containing protein
          [Pseudoalteromonas atlantica T6c]
 gi|109700972|gb|ABG40892.1| cold-shock DNA-binding protein family [Pseudoalteromonas
          atlantica T6c]
          Length = 84

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI PE   + GDD+F H S +   G  +L  GQ V YD VQ    G 
Sbjct: 16 GKVKWFNNAKGFGFIVPE---DGGDDIFAHYSTIQMEGYRSLKAGQEVKYD-VQQGPKGL 71

Query: 65 YSAENL 70
          + AEN+
Sbjct: 72 H-AENI 76


>gi|330830980|ref|YP_004393932.1| Cold shock-like protein cspE [Aeromonas veronii B565]
 gi|328806116|gb|AEB51315.1| Cold shock-like protein cspE [Aeromonas veronii B565]
          Length = 69

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI        G DVF+H S++ S G   L EGQ V +   Q   
Sbjct: 4  IRTGQVKWFNETKGFGFI----EQSQGPDVFVHFSSIQSTGFKTLAEGQKVQFTVTQGKK 59

Query: 62 NGKYSAENLKLV 73
            +  AEN+ LV
Sbjct: 60 GPQ--AENVTLV 69


>gi|260775771|ref|ZP_05884667.1| putative cold-shock DNA-binding domain protein [Vibrio
          coralliilyticus ATCC BAA-450]
 gi|260608187|gb|EEX34356.1| putative cold-shock DNA-binding domain protein [Vibrio
          coralliilyticus ATCC BAA-450]
          Length = 70

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N  KG+GFI P+  T    DVF+H  ++AS G   L EGQ V ++  Q
Sbjct: 7  GSVKWFNETKGFGFIAPDNGTA---DVFVHFRSIASDGFKTLAEGQKVAFNVEQ 57


>gi|255531845|ref|YP_003092217.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366]
 gi|255344829|gb|ACU04155.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366]
          Length = 68

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N  KG+GFITPE   + G D+F+H SA+A      L EG  V ++   ND
Sbjct: 1  MRTTGKVKWFNSAKGFGFITPE---DGGKDIFVHFSAIAGDSFRELNEGDSVEFEL--ND 55

Query: 61 ANGKYSAENLKLV 73
                A+N+ ++
Sbjct: 56 GKKGPEAQNVTVL 68


>gi|297801940|ref|XP_002868854.1| hypothetical protein ARALYDRAFT_912317 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297314690|gb|EFH45113.1| hypothetical protein ARALYDRAFT_912317 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 195

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 4/65 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +GS+KW++  KG+GFITP+   + GDD+F+H+S++ S G  +L   + V ++ V+ D N
Sbjct: 11 RKGSVKWFDTQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLAADEAVEFE-VEMDNN 66

Query: 63 GKYSA 67
           +  A
Sbjct: 67 SRPKA 71


>gi|282863823|ref|ZP_06272881.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|282561524|gb|EFB67068.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG    G DVF H S + + G   L EGQ V +D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIEQEG---GGADVFAHYSNILAQGFRELQEGQKVNFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|258622545|ref|ZP_05717567.1| cold shock domain family protein [Vibrio mimicus VM573]
 gi|258625538|ref|ZP_05720427.1| cold shock domain family protein [Vibrio mimicus VM603]
 gi|262164476|ref|ZP_06032214.1| cold shock protein CspA [Vibrio mimicus VM223]
 gi|262173410|ref|ZP_06041087.1| cold shock protein CspA [Vibrio mimicus MB-451]
 gi|262403011|ref|ZP_06079571.1| cold shock protein CspA [Vibrio sp. RC586]
 gi|258582182|gb|EEW07042.1| cold shock domain family protein [Vibrio mimicus VM603]
 gi|258585245|gb|EEW09972.1| cold shock domain family protein [Vibrio mimicus VM573]
 gi|261890768|gb|EEY36755.1| cold shock protein CspA [Vibrio mimicus MB-451]
 gi|262026856|gb|EEY45523.1| cold shock protein CspA [Vibrio mimicus VM223]
 gi|262350510|gb|EEY99643.1| cold shock protein CspA [Vibrio sp. RC586]
          Length = 70

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N  KG+GF+T +     G+DVF+H +++ S G   LTEGQ V++   Q
Sbjct: 7  GSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLTEGQRVSFTVEQ 57


>gi|54026196|ref|YP_120438.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54017704|dbj|BAD59074.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 68

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  +G    G DVF+H SAV+ +G  +L EGQ V ++  Q     
Sbjct: 3  QGIVKWFNSEKGFGFIAQDGG---GPDVFVHYSAVSGSGFRSLDEGQRVEFEIGQGQKGP 59

Query: 64 KYSAENLKLV 73
          +  A+++++V
Sbjct: 60 Q--AQDVRVV 67


>gi|322832237|ref|YP_004212264.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|321167438|gb|ADW73137.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
          Length = 69

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y  +Q+   G 
Sbjct: 6  GQVKWFNESKGFGFIE---QADGGKDVFVHFSAIATDGFKTLAEGQRVEYT-IQDSPRGP 61

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 62 AAANVIAL 69


>gi|260886462|ref|ZP_05897725.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
 gi|330839687|ref|YP_004414267.1| cold-shock DNA-binding domain protein [Selenomonas sputigena ATCC
          35185]
 gi|260863801|gb|EEX78301.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
 gi|329747451|gb|AEC00808.1| cold-shock DNA-binding domain protein [Selenomonas sputigena ATCC
          35185]
          Length = 66

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G +KW++ +KGYGFI      E GDDVF+H SA+   G   L EGQ V ++ V+ 
Sbjct: 3  GKVKWFSAEKGYGFI----EREDGDDVFVHFSAIQGDGFKTLAEGQGVEFEIVEG 53


>gi|238757593|ref|ZP_04618777.1| Cold shock-like protein cspD [Yersinia aldovae ATCC 35236]
 gi|238704098|gb|EEP96631.1| Cold shock-like protein cspD [Yersinia aldovae ATCC 35236]
          Length = 85

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D V    
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFD-VHQGP 56

Query: 62 NGKYSAENLKLV 73
           G +++  + LV
Sbjct: 57 KGNHASLIVPLV 68


>gi|225175289|ref|ZP_03729284.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
 gi|225169041|gb|EEG77840.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
          Length = 65

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI      E G DVF+H SA+   G  +L EG+ V ++ V+    G 
Sbjct: 3  GKVKWFNQEKGYGFI----EREDGGDVFVHYSAIQQEGFKSLAEGEEVEFEIVEG-TRGP 57

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 58 QAANVVKL 65


>gi|108799262|ref|YP_639459.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          MCS]
 gi|119868378|ref|YP_938330.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          KMS]
 gi|126434920|ref|YP_001070611.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          JLS]
 gi|108769681|gb|ABG08403.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS]
 gi|119694467|gb|ABL91540.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS]
 gi|126234720|gb|ABN98120.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P+G +   DDVF+H S +   G  +L E Q V ++  Q
Sbjct: 3  QGTVKWFNSEKGFGFIAPDGGS---DDVFVHYSEIQGGGFRSLEENQRVEFEIGQ 54


>gi|125624064|ref|YP_001032547.1| cold shock-like protein cspD2 [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|125624081|ref|YP_001032564.1| cold shock protein cspD [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|3850776|emb|CAA76697.1| cold shock protein D [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492872|emb|CAL97830.1| cold shock-like protein cspD2 [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|124492889|emb|CAL97848.1| cold shock protein cspD [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|300070833|gb|ADJ60233.1| Cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000]
 gi|300070850|gb|ADJ60250.1| Cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000]
 gi|326407854|gb|ADZ64925.1| cold shock protein [Lactococcus lactis subsp. lactis CV56]
          Length = 66

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFIT    +E G D+F H SA+ S G  +L EGQ V +D
Sbjct: 4  GTVKWFNATKGFGFIT----SEDGQDLFAHFSAIQSDGFKSLDEGQKVEFD 50


>gi|312795894|ref|YP_004028816.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
 gi|312167669|emb|CBW74672.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+G    G+D+F H S +   G  +L E Q VTY+ V+   
Sbjct: 1  METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRMDGFKSLQENQKVTYE-VKMGP 56

Query: 62 NGKYSA 67
           GK +A
Sbjct: 57 KGKQAA 62


>gi|289549550|ref|YP_003470454.1| Cold shock protein CspC [Staphylococcus lugdunensis HKU09-01]
 gi|289179082|gb|ADC86327.1| Cold shock protein CspC [Staphylococcus lugdunensis HKU09-01]
          Length = 66

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N +KG+GFI      E G+DVF+H S +A  G   L EGQ V +D  +
Sbjct: 1  MNNGTVKWFNAEKGFGFI----EREDGNDVFVHFSGIAGEGYKTLEEGQKVEFDITE 53


>gi|145595639|ref|YP_001159936.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440]
 gi|159038893|ref|YP_001538146.1| cold-shock DNA-binding domain-containing protein [Salinispora
          arenicola CNS-205]
 gi|145304976|gb|ABP55558.1| cold-shock DNA-binding protein family [Salinispora tropica
          CNB-440]
 gi|157917728|gb|ABV99155.1| cold-shock DNA-binding domain protein [Salinispora arenicola
          CNS-205]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF+H S+++ +G   L+EGQ V +D  Q
Sbjct: 4  GTVKWFNAEKGFGFIEQDGG---GPDVFVHYSSISMSGYRELSEGQKVDFDVTQ 54


>gi|229820912|ref|YP_002882438.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
          12333]
 gi|229566825|gb|ACQ80676.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
          12333]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFI  +G    G DVF+H SA+ S G  +L E Q V ++  Q
Sbjct: 3  QGTVKWFNSEKGYGFIAQDG---GGADVFVHYSAIESDGYRSLEEAQRVEFEITQ 54


>gi|94499152|ref|ZP_01305690.1| putative cold-shock DNA-binding domain protein [Oceanobacter sp.
          RED65]
 gi|94428784|gb|EAT13756.1| putative cold-shock DNA-binding domain protein [Oceanobacter sp.
          RED65]
          Length = 68

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF+H SA+  +G   L EGQ VT    Q
Sbjct: 6  GTVKWFNDEKGFGFIQQDG----GKDVFVHYSAIQGSGRRTLAEGQQVTMTVTQ 55


>gi|21222143|ref|NP_627922.1| cold-shock protein [Streptomyces coelicolor A3(2)]
 gi|256786771|ref|ZP_05525202.1| cold-shock protein [Streptomyces lividans TK24]
 gi|289770662|ref|ZP_06530040.1| cold-shock protein [Streptomyces lividans TK24]
 gi|7210998|emb|CAB76978.1| cold-shock protein [Streptomyces coelicolor A3(2)]
 gi|289700861|gb|EFD68290.1| cold-shock protein [Streptomyces lividans TK24]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S + + G   L EGQ VT+D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNINAQGFRELLEGQKVTFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|170736784|ref|YP_001778044.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|169818972|gb|ACA93554.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          MC0-3]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N +KG+GFITP+     GDD+F H S +   G   L EGQ V+Y+
Sbjct: 4  GTVKWFNDNKGFGFITPD---SGGDDLFAHFSEIRGDGFKTLAEGQKVSYE 51


>gi|134097136|ref|YP_001102797.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|291009809|ref|ZP_06567782.1| cold shock protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133909759|emb|CAL99871.1| cold-shock DNA-binding domain protein [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI    +T+ G DVF+H SA+  +G   L EG  V ++ V+   +G+
Sbjct: 4  GTVKWFNSEKGYGFI----ATDGGSDVFVHYSAINMSGFRTLAEGDRVEFE-VKAGRDGR 58

Query: 65 YSAENLK 71
            A+ ++
Sbjct: 59 SQADGVR 65


>gi|187921538|ref|YP_001890570.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phytofirmans PsJN]
 gi|296158545|ref|ZP_06841375.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|187719976|gb|ACD21199.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|295891113|gb|EFG70901.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G+D+F H S V  +G  +L E Q VT++ V+    GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEVQGSGFKSLQENQKVTFE-VKQGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|256396570|ref|YP_003118134.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256362796|gb|ACU76293.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 68

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V+++  Q    G+
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGADVFAHFSNIAADGYRELQEGQRVSFEVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             + + +VP
Sbjct: 57 KGPQAVNIVP 66


>gi|186474439|ref|YP_001863410.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184198398|gb|ACC76360.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G+D+F H S + + G  +L E Q V++D V+    GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIKTEGFKSLQENQKVSFD-VKMGPKGK 59

Query: 65 YSAENLKLV 73
           +A N+K V
Sbjct: 60 QAA-NIKPV 67


>gi|261250705|ref|ZP_05943279.1| putative Cold shock-like protein [Vibrio orientalis CIP 102891]
 gi|260937578|gb|EEX93566.1| putative Cold shock-like protein [Vibrio orientalis CIP 102891]
          Length = 70

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GF+T +     G DVF+H  A+AS G   L EGQ V+++  Q    G+
Sbjct: 7  GSVKWFNETKGFGFLTQD---NGGADVFVHFRAIASDGFKTLNEGQKVSFEVEQ----GQ 59

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 60 KGLQAANVVP 69


>gi|260772014|ref|ZP_05880931.1| putative Cold shock-like protein [Vibrio metschnikovii CIP 69.14]
 gi|260612881|gb|EEX38083.1| putative Cold shock-like protein [Vibrio metschnikovii CIP 69.14]
          Length = 70

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GF++ +     G DVF+H +A+AS G   L EGQ V++  V+N   G 
Sbjct: 7  GTVKWFNETKGFGFLSQD---NGGADVFVHFNAIASEGFKTLIEGQKVSF-VVENGQKGL 62

Query: 65 YSAENLKL 72
           +A+ + L
Sbjct: 63 QAAQVVTL 70


>gi|187929805|ref|YP_001900292.1| cold-shock DNA-binding domain-containing protein [Ralstonia
          pickettii 12J]
 gi|241663931|ref|YP_002982291.1| cold-shock DNA-binding domain-containing protein [Ralstonia
          pickettii 12D]
 gi|309781480|ref|ZP_07676216.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
 gi|187726695|gb|ACD27860.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
 gi|240865958|gb|ACS63619.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
 gi|308919893|gb|EFP65554.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+P+   E G+++F H SA+  AG   L E Q V+++  Q
Sbjct: 4  GTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMAGFKTLKENQRVSFEVTQ 54


>gi|330817033|ref|YP_004360738.1| Cold-shock DNA-binding domain protein [Burkholderia gladioli
          BSR3]
 gi|327369426|gb|AEA60782.1| Cold-shock DNA-binding domain protein [Burkholderia gladioli
          BSR3]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G+D+F+H S +   G  +L + Q V Y+ V+N   GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFVHFSEIKITGFKSLYDNQRVRYE-VRNGPKGK 59

Query: 65 YSAE 68
          ++A+
Sbjct: 60 HAAD 63


>gi|225568420|ref|ZP_03777445.1| hypothetical protein CLOHYLEM_04497 [Clostridium hylemonae DSM
          15053]
 gi|225162648|gb|EEG75267.1| hypothetical protein CLOHYLEM_04497 [Clostridium hylemonae DSM
          15053]
          Length = 66

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++RG++KW+N  KGYGFI    S E+G+DVF+H S +   G  +L EGQ V ++  +
Sbjct: 1  MNRGTVKWFNNQKGYGFI----SDETGNDVFVHYSGLNMDGFKSLEEGQEVEFEVTE 53


>gi|225023806|ref|ZP_03712998.1| hypothetical protein EIKCOROL_00671 [Eikenella corrodens ATCC
          23834]
 gi|224943405|gb|EEG24614.1| hypothetical protein EIKCOROL_00671 [Eikenella corrodens ATCC
          23834]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++
Sbjct: 4  GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMNGFKTLKEGQKVSFE 51


>gi|210608483|ref|ZP_03287859.1| hypothetical protein CLONEX_00038 [Clostridium nexile DSM 1787]
 gi|210153059|gb|EEA84065.1| hypothetical protein CLONEX_00038 [Clostridium nexile DSM 1787]
          Length = 66

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGFI    S E+G+DVF+H S +   G  +L EGQ V ++ V   A
Sbjct: 1  MNKGTVKWFNNQKGYGFI----SDEAGNDVFVHYSGLNMEGFKSLEEGQEVEFE-VTEGA 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 KGPQAVNVVKL 66


>gi|170722579|ref|YP_001750267.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida W619]
 gi|169760582|gb|ACA73898.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
          Length = 83

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G T   DD+F H SA+   G   L  GQ VT++ VQ
Sbjct: 4  GKVKWFNNAKGYGFINEDGKT---DDLFAHYSAIKMDGYKTLKAGQAVTFEIVQ 54


>gi|284043353|ref|YP_003393693.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
 gi|283947574|gb|ADB50318.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 3/60 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++ DKG+GFITP+   + G D+F+H S ++  G  +L EG  V+Y+  Q D   K
Sbjct: 4  GTVKWFSDDKGFGFITPD---DGGRDLFVHYSGISGDGYRSLPEGSKVSYEEEQGDKGPK 60


>gi|86157700|ref|YP_464485.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|197122991|ref|YP_002134942.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|220917780|ref|YP_002493084.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85774211|gb|ABC81048.1| cold-shock DNA-binding protein family [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|196172840|gb|ACG73813.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|219955634|gb|ACL66018.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI+ +G    G+DVF+H +A+ + G  +L EGQ V ++
Sbjct: 4  GTVKWFNDAKGFGFISQDG---GGEDVFVHHTAIVAEGFRSLQEGQRVEFE 51


>gi|152967580|ref|YP_001363364.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
          SRS30216]
 gi|151362097|gb|ABS05100.1| putative cold-shock DNA-binding domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFIT +   + G DVF+H SA+ + G  +L EGQ V ++  Q
Sbjct: 3  QGTVKWFNSEKGYGFITVD---DGGADVFVHYSAITADGYRSLEEGQRVEFEVGQ 54


>gi|197284798|ref|YP_002150670.1| cold shock protein [Proteus mirabilis HI4320]
 gi|227357798|ref|ZP_03842147.1| cold shock protein [Proteus mirabilis ATCC 29906]
 gi|194682285|emb|CAR42037.1| cold shock protein [Proteus mirabilis HI4320]
 gi|227162127|gb|EEI47141.1| cold shock protein [Proteus mirabilis ATCC 29906]
          Length = 70

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N DKG+GFITP+  ++   DVF+H SA+ S    +L EGQ V++
Sbjct: 7  GTVKWFNDDKGFGFITPKDGSK---DVFVHYSAIQSDDFKSLMEGQEVSF 53


>gi|119898412|ref|YP_933625.1| cold shock-like protein [Azoarcus sp. BH72]
 gi|119670825|emb|CAL94738.1| cold shock-like protein [Azoarcus sp. BH72]
          Length = 69

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
             G++KW+N  KG+GFITPE     GDD+F H S + S+G  +L E Q V ++
Sbjct: 3  TQTGTVKWFNDAKGFGFITPE---NGGDDLFAHFSEIQSSGFKSLAENQRVEFE 53


>gi|310823251|ref|YP_003955609.1| Cold-shock protein CspB [Stigmatella aurantiaca DW4/3-1]
 gi|309396323|gb|ADO73782.1| Cold-shock protein CspB [Stigmatella aurantiaca DW4/3-1]
          Length = 67

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI    + E+G+DVF H SA+   G   L EGQ V ++  +      
Sbjct: 4  GTVKWFNDAKGFGFI----AQENGEDVFCHHSAINMDGFRTLAEGQKVEFEVTRGPKG-- 57

Query: 65 YSAENLKLV 73
          + A+N++ V
Sbjct: 58 FQAQNVRAV 66


>gi|254786018|ref|YP_003073447.1| cold shock domain-containing protein CspD [Teredinibacter
          turnerae T7901]
 gi|237686702|gb|ACR13966.1| cold shock domain protein CspD [Teredinibacter turnerae T7901]
          Length = 95

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFI PEG    G+D+F H S+V   G   L  GQ V++D  Q D
Sbjct: 4  GTVKWFNNAKGFGFILPEG---GGEDLFAHYSSVEMDGYRTLKAGQPVSFDIEQGD 56


>gi|304311205|ref|YP_003810803.1| Cold-shock protein CspD [gamma proteobacterium HdN1]
 gi|301796938|emb|CBL45151.1| Cold-shock protein CspD [gamma proteobacterium HdN1]
          Length = 97

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 5/74 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KGYGFI P+G    GDD+F+H S +   G  +L  GQ+VTY+    +A   
Sbjct: 4  GKVKWFNNAKGYGFIRPDG---EGDDLFVHYSYIHMDGYKSLKAGQVVTYEI--REAPKG 58

Query: 65 YSAENLKLVPKSSN 78
            A N+ LV  + +
Sbjct: 59 LHAVNIGLVEHAHD 72


>gi|294013110|ref|YP_003546570.1| cold shock protein CspA [Sphingobium japonicum UT26S]
 gi|292676440|dbj|BAI97958.1| cold shock protein CspA [Sphingobium japonicum UT26S]
          Length = 272

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +K++N  KG+GFI  +   + G+DVF+H SAV  AGL  L EGQ + +  V  D  GK
Sbjct: 102 GVVKFFNGQKGFGFIVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLGFTLV--DRGGK 156

Query: 65  YSAENLKL 72
            SA +LK+
Sbjct: 157 VSATDLKI 164



 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AG+  L EG  + ++ ++ D  GK
Sbjct: 206 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMSALNEGDRLDFE-LEVDRRGK 261

Query: 65  YSAENLK 71
           Y+A NL+
Sbjct: 262 YAAVNLQ 268


>gi|296132465|ref|YP_003639712.1| cold-shock DNA-binding domain protein [Thermincola sp. JR]
 gi|296031043|gb|ADG81811.1| cold-shock DNA-binding domain protein [Thermincola potens JR]
          Length = 65

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N +KG+GFI       +G DVF+H SA+ + G   L EG+ V +D VQ +
Sbjct: 2  EGTVKWFNAEKGFGFI----EASNGSDVFVHFSAIQNEGFKTLEEGEKVFFDIVQGN 54


>gi|114705002|ref|ZP_01437910.1| cold shock protein [Fulvimarina pelagi HTCC2506]
 gi|114539787|gb|EAU42907.1| cold shock protein [Fulvimarina pelagi HTCC2506]
          Length = 70

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N +KG+GFI P+     G D+F+H SAV ++GL  L E Q V+++  + D
Sbjct: 1  MAQTGTVKFFNTEKGFGFIKPD---NGGADIFVHISAVQASGLAGLEENQKVSFE-TEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KRGK 60


>gi|84386379|ref|ZP_00989407.1| putative Cold shock-like protein [Vibrio splendidus 12B01]
 gi|86146530|ref|ZP_01064852.1| putative Cold shock-like protein [Vibrio sp. MED222]
 gi|218708238|ref|YP_002415859.1| putative cold shock protein [Vibrio splendidus LGP32]
 gi|84378803|gb|EAP95658.1| putative Cold shock-like protein [Vibrio splendidus 12B01]
 gi|85835587|gb|EAQ53723.1| putative Cold shock-like protein [Vibrio sp. MED222]
 gi|218321257|emb|CAV17207.1| putative cold shock protein [Vibrio splendidus LGP32]
          Length = 70

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GF+T +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 7  GVVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQ 57


>gi|223470486|gb|ACM90505.1| cold shock protein [Psychromonas arctica]
          Length = 68

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI       SG DVF H SA+AS G   L EGQ V +   Q     
Sbjct: 5  QGTVKWFNESKGFGFI----EQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGPKGP 60

Query: 64 KYSAENL 70
          +  AEN+
Sbjct: 61 Q--AENI 65


>gi|225181192|ref|ZP_03734638.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
 gi|225168161|gb|EEG76966.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
          Length = 65

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N +KG+GFI        G+DVF+H SA+ + G   L EGQ V +D V+
Sbjct: 2  QGKVKWFNAEKGFGFI----ERPDGEDVFVHFSAIQAEGFKTLEEGQDVEFDVVE 52


>gi|326407203|gb|ADZ64274.1| cold shock protein ,beta-ribbon, CspA family [Lactococcus lactis
          subsp. lactis CV56]
          Length = 66

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI    S+E G D+F H SA+ S G  +L EGQ V +D
Sbjct: 4  GTVKWFNATKGFGFI----SSEDGQDLFAHFSAIQSDGFKSLDEGQKVEFD 50


>gi|302538395|ref|ZP_07290737.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302447290|gb|EFL19106.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 67

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q    G+
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATQGYRELQEGQKVNFDVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 57 KGPQAENIVP 66


>gi|254508069|ref|ZP_05120196.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus
          16]
 gi|323496408|ref|ZP_08101466.1| cold-shock protein, DNA-binding [Vibrio sinaloensis DSM 21326]
 gi|219549036|gb|EED26034.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus
          16]
 gi|323318685|gb|EGA71638.1| cold-shock protein, DNA-binding [Vibrio sinaloensis DSM 21326]
          Length = 70

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFIT E     G DVF+H  A+   G   L EGQ V ++  Q
Sbjct: 7  GTVKWFNEEKGFGFITQE---NGGADVFVHFRAITGEGFKTLAEGQKVAFEVEQ 57


>gi|71983217|ref|NP_001021085.1| abnormal cell LINeage family member (lin-28) [Caenorhabditis
           elegans]
 gi|74961916|sp|P92186|LIN28_CAEEL RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage
           protein 28
 gi|1763342|gb|AAB49759.1| Lin-28 [Caenorhabditis elegans]
 gi|1763344|gb|AAC47476.1| LIN-28 [Caenorhabditis elegans]
 gi|6434275|emb|CAB61008.1| C. elegans protein F02E9.2a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 227

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS KW+N  KGYGF+  +    +G+D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 55  GSCKWFNVSKGYGFVIDDI---TGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110


>gi|294142287|ref|YP_003558265.1| cold shock-like protein cspG [Shewanella violacea DSS12]
 gi|22256741|sp|Q9S170|CSPG_SHEVD RecName: Full=Cold shock-like protein CspG
 gi|5869509|dbj|BAA84218.1| CspG [Shewanella violacea]
 gi|293328756|dbj|BAJ03487.1| cold shock-like protein cspG [Shewanella violacea DSS12]
          Length = 70

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     GDDVF+H  ++ S G   L EGQ V+++  Q
Sbjct: 7  GLVKWFNEEKGFGFITQD---NGGDDVFVHFRSITSDGFKTLAEGQKVSFEVEQ 57


>gi|71983225|ref|NP_492281.2| abnormal cell LINeage family member (lin-28) [Caenorhabditis
          elegans]
 gi|6434276|emb|CAB61009.1| C. elegans protein F02E9.2b, confirmed by transcript evidence
          [Caenorhabditis elegans]
          Length = 196

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS KW+N  KGYGF+  +    +G+D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 24 GSCKWFNVSKGYGFVIDDI---TGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 79


>gi|21219062|ref|NP_624841.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|256789924|ref|ZP_05528355.1| cold shock protein [Streptomyces lividans TK24]
 gi|289773805|ref|ZP_06533183.1| cold shock protein scoF [Streptomyces lividans TK24]
 gi|1345847|sp|P48859|CSPF_STRCO RecName: Full=Cold shock protein ScoF
 gi|1067201|emb|CAA63367.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|6137029|emb|CAB59584.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|117164740|emb|CAJ88288.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|289704004|gb|EFD71433.1| cold shock protein scoF [Streptomyces lividans TK24]
          Length = 67

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S + + G   L EGQ VT+D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNINAQGYRELQEGQAVTFDITQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|315303807|ref|ZP_07874300.1| conserved domain protein [Listeria ivanovii FSL F6-596]
 gi|313627819|gb|EFR96459.1| conserved domain protein [Listeria ivanovii FSL F6-596]
          Length = 66

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KGYGFI  +G    G+D+F+H +A+   G  +L EGQ V ++ V+ +
Sbjct: 1  MQNGKVKWFNNEKGYGFIESDG----GEDIFVHFTAIQGDGYKSLEEGQAVIFEVVEGN 55


>gi|302536155|ref|ZP_07288497.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302445050|gb|EFL16866.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 67

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q V +D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVNFDVTQ 54


>gi|307293725|ref|ZP_07573569.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306879876|gb|EFN11093.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 275

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +K++N  KG+GFI  +   + G+DVF+H SAV  AGL  L EGQ + +  V  D  GK
Sbjct: 107 GVVKFFNGQKGFGFIVRD---DGGEDVFVHISAVEQAGLTGLAEGQQLGFTLV--DRGGK 161

Query: 65  YSAENLKL 72
            SA +LK+
Sbjct: 162 VSATDLKI 169



 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AG+  L EG  + ++ ++ D  GK
Sbjct: 209 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMSALNEGDRLDFE-LEVDRRGK 264

Query: 65  YSAENLK 71
           Y+A NL+
Sbjct: 265 YAAVNLQ 271


>gi|322420218|ref|YP_004199441.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
          M18]
 gi|320126605|gb|ADW14165.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
          Length = 66

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+      E+G+DVF H SA+   G  +L EG  VT+D V+
Sbjct: 4  GTVKWFNDSKGFGFL----EQENGEDVFCHFSAITGDGFKSLAEGDRVTFDLVK 53


>gi|312880812|ref|ZP_07740612.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM
          12260]
 gi|310784103|gb|EFQ24501.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM
          12260]
          Length = 67

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  KGYGFIT    T+ G DVF H SA+   G   L EG  V+ D V+  
Sbjct: 1  MATQGTVKWFNATKGYGFIT----TDEGRDVFCHFSAIKMDGYKALDEGVRVSLD-VEMG 55

Query: 61 ANGKYSAENLKL 72
            G+ +A  +KL
Sbjct: 56 PKGEQAANVVKL 67


>gi|283796457|ref|ZP_06345610.1| cold shock protein [Clostridium sp. M62/1]
 gi|291075865|gb|EFE13229.1| cold shock protein [Clostridium sp. M62/1]
 gi|295091398|emb|CBK77505.1| cold-shock DNA-binding protein family [Clostridium cf.
          saccharolyticum K10]
          Length = 66

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H+G++KW+N  KGYGFI      E G+DVF+H S +   G  +L EG  V ++ V N A
Sbjct: 1  MHKGTVKWFNNQKGYGFICD----EEGNDVFVHYSGLNMEGFKSLDEGAQVEFEVV-NGA 55

Query: 62 NGKYSAENLKL 72
           G  +    KL
Sbjct: 56 KGPQATNVTKL 66


>gi|119717093|ref|YP_924058.1| cold-shock DNA-binding protein family protein [Nocardioides sp.
          JS614]
 gi|119537754|gb|ABL82371.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614]
          Length = 67

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N DKG+GFI  +G    G DVF+H +A+A  G  +L + Q V ++  Q     
Sbjct: 3  QGTVKWFNDDKGFGFIAQDG---GGPDVFVHHTAIAGTGFKSLKDDQRVEFEVTQGPKGP 59

Query: 64 KYSAENLK 71
          +  AEN++
Sbjct: 60 Q--AENVR 65


>gi|71725899|gb|AAZ39068.1| cold shock protein [Exiguobacterium antarcticum]
          Length = 67

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 4/49 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G +KW+N +KG+GFI      ESGDDVF+H SA+ + G  +L EGQ V+
Sbjct: 4  GKVKWFNAEKGFGFI----ERESGDDVFVHFSAIQTDGFKSLDEGQEVS 48


>gi|207722622|ref|YP_002253058.1| cold shock-like protein [Ralstonia solanacearum MolK2]
 gi|300696567|ref|YP_003747228.1| Cold shock DNA binding protein (transcriptional regulator)
          [Ralstonia solanacearum CFBP2957]
 gi|206587804|emb|CAQ18386.1| cold shock-like protein [Ralstonia solanacearum MolK2]
 gi|299073291|emb|CBJ52800.1| Cold shock DNA binding protein (transcription regulator)
          [Ralstonia solanacearum CFBP2957]
          Length = 67

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G++KW+N  KG+GFITP+G    G D+F H S +  AG   L +GQ V+++  Q 
Sbjct: 4  GTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGAGFKTLKDGQKVSFEVKQG 55


>gi|88606701|ref|YP_504760.1| CSD family cold shock protein [Anaplasma phagocytophilum HZ]
 gi|88597764|gb|ABD43234.1| cold shock protein, CSD family [Anaplasma phagocytophilum HZ]
          Length = 89

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 10/79 (12%)

Query: 5  GSIKWYNPDKGYGFI---TPEGSTESG-----DDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G +KW++ +KGYGFI   + EGS  S       DVF+H +++  + + NL EGQ V Y  
Sbjct: 13 GHVKWFSVEKGYGFICKDSSEGSKGSAMGHGEKDVFVHITSLQRSRIDNLREGQKVRYQL 72

Query: 57 VQNDANGKYSAENLKLVPK 75
           +N  NGK SA NL+++ +
Sbjct: 73 DEN--NGKVSAVNLEVLSE 89


>gi|332685716|ref|YP_004455490.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311]
 gi|332369725|dbj|BAK20681.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311]
          Length = 66

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N +KG+GFI    S E G DVF+H SA+   G   L E Q VT+D  +++
Sbjct: 1  MEHGTVKWFNAEKGFGFI----SREDGSDVFVHFSAIQGDGFKTLEEDQPVTFDVEESE 55


>gi|332526271|ref|ZP_08402400.1| cold-shock DNA-binding protein family protein [Rubrivivax
          benzoatilyticus JA2]
 gi|332110105|gb|EGJ10733.1| cold-shock DNA-binding protein family protein [Rubrivivax
          benzoatilyticus JA2]
          Length = 79

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G DVF H SAV   G   L +G  V ++ VQ
Sbjct: 4  GTVKWFNDAKGFGFIEPEG---GGADVFAHFSAVQMDGFRTLKQGSRVEFELVQ 54


>gi|291301635|ref|YP_003512913.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia
          nassauensis DSM 44728]
 gi|290570855|gb|ADD43820.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis
          DSM 44728]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G+     DVF+H SA+ + G   L+EGQ V ++  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIERDGNE---PDVFVHFSAIQTQGYRELSEGQKVEFEVTQGQKGPQ 60

Query: 65 YSAENLK 71
            AEN+K
Sbjct: 61 --AENVK 65


>gi|50121583|ref|YP_050750.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043]
 gi|49612109|emb|CAG75559.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043]
          Length = 73

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI PEG    GDD+F H S +   G   L  GQ+V +D
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFD 51


>gi|24112787|ref|NP_707297.1| cold shock-like protein CspC [Shigella flexneri 2a str. 301]
 gi|82543745|ref|YP_407692.1| cold shock-like protein CspC [Shigella boydii Sb227]
 gi|33301070|sp|Q83RI9|CSPC_SHIFL RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|24051715|gb|AAN43004.1| cold shock protein [Shigella flexneri 2a str. 301]
 gi|81245156|gb|ABB65864.1| cold shock protein [Shigella boydii Sb227]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   GL  L EGQ V ++ +Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGLKTLAEGQNVEFE-IQDGQKG 60


>gi|325529192|gb|EGD06159.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. TJI49]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+   + GDD+F H S +   G   L EGQ V+Y+
Sbjct: 4  GTVKWFNDTKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYE 51


>gi|158317202|ref|YP_001509710.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
          EAN1pec]
 gi|158112607|gb|ABW14804.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
          Length = 94

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+N +KG+GFI+ +G    G DVF H S++   G  +L EGQ V++D  Q   
Sbjct: 27 VSEGTVKWFNAEKGFGFISVDG---GGPDVFAHFSSIVGDGYKSLEEGQRVSFDIEQ--- 80

Query: 62 NGKYSAENLKLVPKS 76
           G+   +  K+ P S
Sbjct: 81 -GQKGPQAAKVQPLS 94


>gi|349561|gb|AAB66357.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium]
          Length = 70

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ + G  +L EGQ V++  +++ A G 
Sbjct: 7  GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF-TIESGAKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|269793598|ref|YP_003313053.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
          10542]
 gi|269095783|gb|ACZ20219.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
          10542]
          Length = 62

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N +KG+GFI PE  +    DVF H SA+AS+G  +L E Q V +D  Q     +  
Sbjct: 1  MKWFNAEKGFGFIAPEDGSA---DVFAHYSAIASSGYRSLDENQKVEFDVTQGPKGPQ-- 55

Query: 67 AENLK 71
          AEN++
Sbjct: 56 AENIR 60


>gi|333025177|ref|ZP_08453241.1| putative cold shock protein [Streptomyces sp. Tu6071]
 gi|332745029|gb|EGJ75470.1| putative cold shock protein [Streptomyces sp. Tu6071]
          Length = 62

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q VT+D  Q
Sbjct: 1  MKWFNAEKGFGFIAQEGG---GPDVFVHYSAINANGFRSLEENQAVTFDVTQ 49


>gi|222109154|ref|YP_002551419.1| CspA-like protein [Agrobacterium vitis S4]
 gi|221738428|gb|ACM39293.1| CspA-like protein [Agrobacterium vitis S4]
          Length = 99

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KGYGFIT   S + G DVFLH S V  A L  L  G  V   YV      K
Sbjct: 4  GKLKWFDTTKGYGFIT---SDDGGPDVFLHLSKVTEANLPTLQPG--VRLRYVLGRQGNK 58

Query: 65 YSAENLKLVPKSS 77
           SA +L L+P  +
Sbjct: 59 VSAHDLSLMPDEA 71


>gi|119475680|ref|ZP_01616033.1| cold-shock DNA-binding domain protein [marine gamma
          proteobacterium HTCC2143]
 gi|119451883|gb|EAW33116.1| cold-shock DNA-binding domain protein [marine gamma
          proteobacterium HTCC2143]
          Length = 68

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI      ESG DVF H SA+ S+G   L EGQ V +
Sbjct: 6  GTVKWFNESKGFGFI----EQESGPDVFAHFSAIVSSGFKTLAEGQRVEF 51


>gi|288959216|ref|YP_003449557.1| cold shock protein [Azospirillum sp. B510]
 gi|288911524|dbj|BAI73013.1| cold shock protein [Azospirillum sp. B510]
          Length = 186

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++KW+NP KG+GF++PE   +   D FLH SAV +AG   L EG  +T D  +
Sbjct: 23 TVKWFNPTKGFGFVSPE---DGSPDAFLHVSAVQAAGYDALDEGTTITCDLAR 72



 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 3/48 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           G++KW+N DKG+GFITP   +  G DVF+H + +  +G+  L EG  V
Sbjct: 123 GTVKWFNADKGFGFITP---STGGKDVFVHVNVLRRSGMQTLQEGDQV 167


>gi|111224718|ref|YP_715512.1| major cold shock protein/transcription antiterminator [Frankia
          alni ACN14a]
 gi|111152250|emb|CAJ63981.1| major cold shock protein 7.4, transcription antiterminator of
          hns, ssDNA-binding property [Frankia alni ACN14a]
          Length = 63

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 3/53 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +KW+N +KG+GFI+ +G    G DVF+H S++ S G  +L EGQ V++D  Q 
Sbjct: 1  MKWFNAEKGFGFISVDGG---GGDVFVHFSSIVSEGFKSLDEGQRVSFDIEQG 50


>gi|218548403|ref|YP_002382194.1| cold shock protein-like protein [Escherichia fergusonii ATCC
          35469]
 gi|218355944|emb|CAQ88559.1| cold shock protein homolog [Escherichia fergusonii ATCC 35469]
 gi|324113824|gb|EGC07799.1| cold shock domain-containing protein CspD [Escherichia fergusonii
          B253]
 gi|325496824|gb|EGC94683.1| cold shock protein [Escherichia fergusonii ECD227]
          Length = 73

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 1  MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQPVQFDVTQ 54


>gi|218134817|ref|ZP_03463621.1| hypothetical protein BACPEC_02720 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990202|gb|EEC56213.1| hypothetical protein BACPEC_02720 [Bacteroides pectinophilus ATCC
           43243]
          Length = 111

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++KW+N  KGYGFI    S ESG+DVF+H S +   G  +L EG  V +D V N A G
Sbjct: 48  KGTVKWFNNQKGYGFI----SDESGNDVFVHYSGLNMEGFKSLDEGAEVEFDVV-NGAKG 102

Query: 64  KYSAENLKL 72
             +    KL
Sbjct: 103 PQATNVTKL 111


>gi|260753178|ref|YP_003226071.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552541|gb|ACV75487.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 303

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 5/66 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +K++N  KG+GF+  +   + G+DVF+H SAV  AGL  L EGQ +++  V  D  G+
Sbjct: 138 GVVKFFNSQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGGR 192

Query: 65  YSAENL 70
            SA NL
Sbjct: 193 VSATNL 198



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 4/66 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AGL +L EG  ++++ ++ D  GK
Sbjct: 237 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGLPSLNEGDRLSFE-LEVDRRGK 292

Query: 65  YSAENL 70
           Y+A NL
Sbjct: 293 YAAVNL 298


>gi|187251844|ref|YP_001876326.1| cold-shock DNA-binding domain-containing protein [Elusimicrobium
          minutum Pei191]
 gi|186972004|gb|ACC98989.1| Cold-shock DNA-binding domain protein [Elusimicrobium minutum
          Pei191]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G IKW+N  KGYGF+TPE  +    D+F+H   +   G   L EGQ V +D  +++   
Sbjct: 3  QGKIKWFNDQKGYGFVTPEDGSA---DLFVHYQEIQGEGFKTLAEGQAVEFDVAKSEKGP 59

Query: 64 KYSAENLKLV 73
          K  A N++ +
Sbjct: 60 K--ATNVRKI 67


>gi|330683909|gb|EGG95678.1| cold shock protein CspD [Staphylococcus epidermidis VCU121]
          Length = 58

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N DKG+GFI       +G+DVF+H S +A  G  +L EGQ V +D ++
Sbjct: 1  MNNGTVKWFNADKGFGFI----ERGNGNDVFVHYSGIAGEGYKSLEEGQNVDFDIIE 53


>gi|319441307|ref|ZP_07990463.1| putative cold shock protein [Corynebacterium variabile DSM 44702]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI P+   +   D+F+H SA+ S+G  +L E Q V+++ V+  A G 
Sbjct: 4  GTVKWFNAEKGFGFIAPD---DGSSDIFVHYSAIQSSGFRSLEEDQKVSFE-VEAGAKGP 59

Query: 65 YSAE 68
           +A+
Sbjct: 60 AAAD 63


>gi|238757625|ref|ZP_04618809.1| Cold shock-like protein cspE [Yersinia aldovae ATCC 35236]
 gi|238704130|gb|EEP96663.1| Cold shock-like protein cspE [Yersinia aldovae ATCC 35236]
          Length = 65

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y  +Q+   G 
Sbjct: 2  GQVKWFNESKGFGFIE---QADGGKDVFVHFSAIATDGFKTLAEGQRVEYT-IQDSPRGP 57

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 58 AAANVVAL 65


>gi|89096927|ref|ZP_01169818.1| cold shock protein [Bacillus sp. NRRL B-14911]
 gi|89088307|gb|EAR67417.1| cold shock protein [Bacillus sp. NRRL B-14911]
          Length = 66

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N +KG+GFI     T  G DVF+H SA+   G   L EGQ V++D
Sbjct: 4  GKVKWFNAEKGFGFI----ETSEGQDVFVHFSAIQGEGFKTLDEGQEVSFD 50


>gi|326794422|ref|YP_004312242.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
           MMB-1]
 gi|326545186|gb|ADZ90406.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 154

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GF+T     + GDDVF+H  A+   G   L EGQ V + YV     GK
Sbjct: 90  GTVKWFNSSKGFGFLT----LDDGDDVFVHYRAIRGRGRRFLVEGQKVRF-YVTEGEKGK 144

Query: 65  YSAENLKLV 73
             AEN+ ++
Sbjct: 145 -QAENVSII 152


>gi|119469734|ref|ZP_01612603.1| Cold shock protein [Alteromonadales bacterium TW-7]
 gi|119446981|gb|EAW28252.1| Cold shock protein [Alteromonadales bacterium TW-7]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFI      ESG DVF H SA++  G   L EGQ V +   Q     +
Sbjct: 7  GSVKWFNEAKGFGFI----EQESGPDVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKGPQ 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 --AENI 66


>gi|331699456|ref|YP_004335695.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326954145|gb|AEA27842.1| cold-shock DNA-binding domain protein [Pseudonocardia
          dioxanivorans CB1190]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI    +T+ G DVF+H SA+ + G   L EG  V ++      +G
Sbjct: 3  QGTVKWFNSEKGYGFI----ATDGGPDVFVHYSAIQADGFRTLDEGDRVEFETTAG-RDG 57

Query: 64 KYSAENLKLV 73
          +  AE ++ +
Sbjct: 58 RSQAEAVRRI 67


>gi|229085316|ref|ZP_04217558.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
 gi|228698035|gb|EEL50778.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI      E G+DVF+H SA+   G  +L EGQ V+++    D
Sbjct: 1  MTLTGKVKWFNSEKGFGFI----EVEDGNDVFVHFSAITGDGFKSLDEGQEVSFEV--ED 54

Query: 61 ANGKYSAENL 70
           N    A+N+
Sbjct: 55 GNRGPQAKNV 64


>gi|164688479|ref|ZP_02212507.1| hypothetical protein CLOBAR_02124 [Clostridium bartlettii DSM
          16795]
 gi|164602892|gb|EDQ96357.1| hypothetical protein CLOBAR_02124 [Clostridium bartlettii DSM
          16795]
          Length = 66

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI+ EG      DVF+H SA+   G  +L EGQ V +D V+  A G 
Sbjct: 4  GVVKWFNNEKGFGFISVEGE----GDVFVHFSAIQCDGYKSLEEGQNVEFDVVEG-AKGP 58

Query: 65 YSAENLKL 72
           +A  ++L
Sbjct: 59 QAANVVRL 66


>gi|73538959|ref|YP_299326.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72122296|gb|AAZ64482.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KGYGFITP+   + G D+F H S +  +G  +L EG  V +D  Q
Sbjct: 4  GIVKWFNNEKGYGFITPD---DGGKDLFAHHSEIQGSGFKSLDEGAKVEFDVTQ 54


>gi|120599534|ref|YP_964108.1| cold-shock DNA-binding domain-containing protein [Shewanella sp.
          W3-18-1]
 gi|146292469|ref|YP_001182893.1| cold-shock DNA-binding domain-containing protein [Shewanella
          putrefaciens CN-32]
 gi|120559627|gb|ABM25554.1| cold-shock DNA-binding protein family [Shewanella sp. W3-18-1]
 gi|145564159|gb|ABP75094.1| cold-shock DNA-binding protein family [Shewanella putrefaciens
          CN-32]
 gi|319425771|gb|ADV53845.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens
          200]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFI+P+     G D F+H  A+ S G   L EGQ V++D  Q
Sbjct: 6  GVVKWFNEEKGFGFISPD---NGGADAFVHFRAIVSEGFKTLGEGQKVSFDIEQ 56


>gi|328880109|emb|CCA53348.1| cold shock protein [Streptomyces venezuelae ATCC 10712]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +   G   LTEG+ VT+D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNIQGNGYRELTEGEAVTFDITQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|315651983|ref|ZP_07904985.1| cold shock protein Csp [Eubacterium saburreum DSM 3986]
 gi|315485812|gb|EFU76192.1| cold shock protein Csp [Eubacterium saburreum DSM 3986]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++RG++KW+N  KGYGFI+ EG    G+DVF+H S +   G   L EG  V YD  +
Sbjct: 1  MNRGTVKWFNNQKGYGFISDEG----GNDVFVHFSDLNMDGFKTLDEGNSVEYDLTE 53


>gi|86743144|ref|YP_483544.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3]
 gi|86570006|gb|ABD13815.1| cold-shock DNA-binding protein family [Frankia sp. CcI3]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI+ +G    G DVF+H S++ + G  +L EGQ V ++ VQ     
Sbjct: 3  QGTVKWFNAEKGFGFISVDG---GGPDVFVHYSSIVADGYKSLDEGQSVQFEIVQGQKGP 59

Query: 64 KYSAENLKLV 73
          +  A+N++ V
Sbjct: 60 Q--ADNVQPV 67


>gi|115360542|ref|YP_777679.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria AMMD]
 gi|115285870|gb|ABI91345.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
          AMMD]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+   + GDD+F H S +   G   L EGQ V+Y+
Sbjct: 4  GTVKWFNDGKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYE 51


>gi|332306352|ref|YP_004434203.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|332173681|gb|AEE22935.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 72

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI PE   + GDD+F H S +   G  +L  GQ V YD VQ    G 
Sbjct: 4  GKVKWFNNAKGFGFIVPE---DGGDDIFAHYSTIQMEGYRSLKAGQEVKYD-VQQGPKGL 59

Query: 65 YSAENLKL 72
          + AEN+  
Sbjct: 60 H-AENIDF 66


>gi|329117514|ref|ZP_08246231.1| major cold shock protein CspA [Streptococcus parauberis NCFD
          2020]
 gi|326907919|gb|EGE54833.1| major cold shock protein CspA [Streptococcus parauberis NCFD
          2020]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFIT     E+G DVF H S + S G  +L EGQ V +D
Sbjct: 3  QGTVKWFNAEKGFGFITQ----ENGSDVFAHFSEIQSDGYKSLDEGQKVEFD 50


>gi|312962258|ref|ZP_07776750.1| cold-shock protein, DNA-binding [Pseudomonas fluorescens WH6]
 gi|311283595|gb|EFQ62184.1| cold-shock protein, DNA-binding [Pseudomonas fluorescens WH6]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFIT +G    G DVF+H SA+ S G   L E Q V ++  Q
Sbjct: 4  GTVKWFNAEKGFGFITQDG---GGADVFVHFSAIQSDGFKTLEENQKVEFEIEQ 54


>gi|270261198|ref|ZP_06189471.1| hypothetical protein SOD_a04230 [Serratia odorifera 4Rx13]
 gi|270044682|gb|EFA17773.1| hypothetical protein SOD_a04230 [Serratia odorifera 4Rx13]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y  +Q+   G 
Sbjct: 6  GQVKWFNESKGFGFIE---QNDGGKDVFVHFSAIATDGFKTLAEGQRVEYS-IQDSPRGP 61

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 62 AAANVVAL 69


>gi|261212974|ref|ZP_05927258.1| cold shock protein CspA [Vibrio sp. RC341]
 gi|260838039|gb|EEX64716.1| cold shock protein CspA [Vibrio sp. RC341]
          Length = 66

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N  KG+GF+T +     G+DVF+H +++ S G   LTEGQ V++   Q
Sbjct: 3  GSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLTEGQRVSFTVEQ 53


>gi|15838943|ref|NP_299631.1| cold shock protein [Xylella fastidiosa 9a5c]
 gi|9107526|gb|AAF85151.1|AE004045_9 cold shock protein [Xylella fastidiosa 9a5c]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW++  KG+GFI+P+  T    +VF H S + S G  +L EGQ VTYD  Q
Sbjct: 1  MQSGTVKWFSDQKGFGFISPDDGTP---EVFAHYSGINSKGFRSLHEGQRVTYDVTQ 54


>gi|27377231|ref|NP_768760.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27350374|dbj|BAC47385.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 68

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KGYGFI P+   +   DVF+H  +V  AG  +L EG  ++++  +  ++GK
Sbjct: 4  GIVKWFSATKGYGFIKPD---DGEADVFVHIRSVEKAGYTSLAEGARISFER-KTGSSGK 59

Query: 65 YSAENLKL 72
           SA+NL++
Sbjct: 60 VSADNLRI 67


>gi|111226121|ref|YP_716915.1| major cold shock protein, ssDNA-binding property [Frankia alni
          ACN14a]
 gi|111153653|emb|CAJ65413.1| major cold shock protein, ssDNA-binding property [Frankia alni
          ACN14a]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI+ +G    G DVF+H S++ + G  +L EGQ V ++ VQ
Sbjct: 3  QGTVKWFNAEKGFGFISVDG---GGPDVFVHYSSIVADGYKSLDEGQSVQFEIVQ 54


>gi|170702637|ref|ZP_02893506.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171319239|ref|ZP_02908355.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|172064865|ref|YP_001815577.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|170132457|gb|EDT00916.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171095541|gb|EDT40505.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|171997107|gb|ACB68024.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MC40-6]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+   + GDD+F H S +   G   L EGQ V+Y+
Sbjct: 4  GTVKWFNDGKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYE 51


>gi|26988254|ref|NP_743679.1| cold shock protein CspA [Pseudomonas putida KT2440]
 gi|148549408|ref|YP_001269510.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida F1]
 gi|167032140|ref|YP_001667371.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida GB-1]
 gi|325278118|ref|ZP_08143630.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
 gi|24982997|gb|AAN67143.1|AE016343_3 cold shock protein CspA [Pseudomonas putida KT2440]
 gi|148513466|gb|ABQ80326.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
 gi|166858628|gb|ABY97035.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
 gi|313500255|gb|ADR61621.1| CspA [Pseudomonas putida BIRD-1]
 gi|324096743|gb|EGB95077.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI  EG    G DVF+H  A+   G   L EGQ V Y  VQ
Sbjct: 7  GNVKWFNDAKGYGFIQREG----GADVFVHYRAIRGEGHRTLVEGQRVEYACVQ 56


>gi|218780562|ref|YP_002431880.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218761946|gb|ACL04412.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      E G DVF+H SA+   G  +L EGQ V +  VQ
Sbjct: 7  GTVKWFNDKKGFGFI----EREEGGDVFVHYSAIVGNGFRSLAEGQKVEFTVVQ 56


>gi|300715528|ref|YP_003740331.1| Cold shock protein [Erwinia billingiae Eb661]
 gi|299061364|emb|CAX58473.1| Cold shock protein [Erwinia billingiae Eb661]
          Length = 70

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI+P   T+   DVF+H SA+ + G   L EGQ V +  ++N   G 
Sbjct: 7  GLVKWFNAEKGFGFISP---TDGSKDVFVHFSAIQNGGFKTLEEGQKVEFS-IENGQKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|320012738|gb|ADW07588.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI  +G    G +VF H S +A+ GL  L EGQ VT+D  Q
Sbjct: 4  GTVKWFNAAKGFGFIEQDGD---GAEVFAHFSNIAAQGLPELFEGQKVTFDVTQ 54


>gi|197116608|ref|YP_002137035.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|197085968|gb|ACH37239.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
          Length = 66

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N  KG+GFI      E+G+DVF+H SA+   G  +L EG  VT+D  Q
Sbjct: 3  KGVVKWFNDSKGFGFI----EQENGEDVFVHFSAIQGDGFKSLAEGDSVTFDVQQ 53


>gi|153954443|ref|YP_001395208.1| hypothetical protein CKL_1818 [Clostridium kluyveri DSM 555]
 gi|219855034|ref|YP_002472156.1| hypothetical protein CKR_1691 [Clostridium kluyveri NBRC 12016]
 gi|146347324|gb|EDK33860.1| Hypothetical protein CKL_1818 [Clostridium kluyveri DSM 555]
 gi|219568758|dbj|BAH06742.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 65

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFIT     E G+DVF H S + S G   L EGQ V++D  +     +
Sbjct: 3  GTVKWFNENKGFGFITG----EDGNDVFAHFSQINSEGYKTLEEGQKVSFDKTRGQKGPQ 58

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 59 --AENITVL 65


>gi|148975746|ref|ZP_01812577.1| putative Cold shock-like protein [Vibrionales bacterium SWAT-3]
 gi|145964819|gb|EDK30071.1| putative Cold shock-like protein [Vibrionales bacterium SWAT-3]
          Length = 70

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI+ +     G DVF+H  A+ S G   L EGQ V+++ V+N   G 
Sbjct: 7  GTVKWFNEEKGFGFISQD---NGGADVFVHFRAIVSEGFKTLKEGQKVSFE-VENGQKGL 62

Query: 65 YSA 67
           +A
Sbjct: 63 QAA 65


>gi|289450032|ref|YP_003475336.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          genomosp. BVAB3 str. UPII9-5]
 gi|289184579|gb|ADC91004.1| cold-shock DNA-binding domain protein [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
          Length = 70

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++KW+N  KGYGFI  +     GDD+F+H SA+   G   L EGQ VT+D
Sbjct: 1  MNTGTVKWFNDTKGYGFIAND---NGGDDLFVHFSAIRIDGFKTLKEGQKVTFD 51


>gi|284046161|ref|YP_003396501.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
 gi|283950382|gb|ADB53126.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++ +KG+GFITP+   E   D+F+H + + S G  +L EG  V+YD  Q D   K
Sbjct: 4  GTVKWFSDEKGFGFITPD---EGSRDLFVHHTGINSDGYRSLAEGAKVSYDEEQGDKGPK 60


>gi|260599717|ref|YP_003212288.1| RNA chaperone/anti-terminator [Cronobacter turicensis z3032]
 gi|260218894|emb|CBA34249.1| Cold shock protein cspA [Cronobacter turicensis z3032]
          Length = 70

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFITP+  ++   DVF+H SA+   G   L EGQ V++  V++ A G 
Sbjct: 7  GLVKWFNAEKGFGFITPDNGSK---DVFVHFSAIQDNGFKTLEEGQKVSFT-VESGAKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|7498486|pir||T20509 hypothetical protein F02E9.2a - Caenorhabditis elegans
          Length = 211

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS KW+N  KGYGF+  +    +G+D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 55  GSCKWFNVSKGYGFVIDD---ITGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110


>gi|260774155|ref|ZP_05883070.1| cold shock protein CspE [Vibrio metschnikovii CIP 69.14]
 gi|260611116|gb|EEX36320.1| cold shock protein CspE [Vibrio metschnikovii CIP 69.14]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+ S G   L EGQ V +   Q     +
Sbjct: 7  GTVKWFNETKGFGFI----KQENGPDVFAHFSAIQSEGFRTLAEGQKVEFVITQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AE++K++
Sbjct: 63 --AESIKVL 69


>gi|229102298|ref|ZP_04233007.1| Cold shock-like protein cspB [Bacillus cereus Rock3-28]
 gi|228681199|gb|EEL35367.1| Cold shock-like protein cspB [Bacillus cereus Rock3-28]
          Length = 77

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  +G+    DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 14 QGKVKWFNNEKGFGFIEMDGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 68

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 69 PQAANVVKL 77


>gi|119946183|ref|YP_943863.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119864787|gb|ABM04264.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           +G++KW+N  KG+GFI       SG DVF H SA+AS G   L EGQ V +   Q  
Sbjct: 5  EQGTVKWFNEAKGFGFI----EQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQ 58


>gi|326794630|ref|YP_004312450.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
 gi|326545394|gb|ADZ90614.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
          Length = 84

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +HRGS+KW+N  KGYGFI  +   E   D+F+H SA+   G   L  GQ VT+D
Sbjct: 1  MHRGSVKWFNNAKGYGFIVSDSFDE---DLFIHYSAINVEGYKTLKAGQSVTFD 51


>gi|153833621|ref|ZP_01986288.1| putative cold-shock' DNA-binding domain [Vibrio harveyi HY01]
 gi|156977630|ref|YP_001448536.1| hypothetical protein VIBHAR_06418 [Vibrio harveyi ATCC BAA-1116]
 gi|148870019|gb|EDL68974.1| putative cold-shock' DNA-binding domain [Vibrio harveyi HY01]
 gi|156529224|gb|ABU74309.1| hypothetical protein VIBHAR_06418 [Vibrio harveyi ATCC BAA-1116]
          Length = 70

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GF+T +     G DVF+H +A+ + G   LTEGQ V++    N  +GK
Sbjct: 7  GSVKWFNETKGFGFLTQD---NGGQDVFVHFNAIVADGFKTLTEGQKVSF----NVEDGK 59

Query: 65 YSAENLKLVP 74
             +  ++ P
Sbjct: 60 KGPQATEVTP 69


>gi|59713168|ref|YP_205944.1| cold shock protein [Vibrio fischeri ES114]
 gi|197334115|ref|YP_002157348.1| cold-shock' DNA-binding domain, putative [Vibrio fischeri MJ11]
 gi|59481269|gb|AAW87056.1| cold shock protein [Vibrio fischeri ES114]
 gi|197315605|gb|ACH65052.1| cold-shock' DNA-binding domain, putative [Vibrio fischeri MJ11]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+A+ G   L EGQ VT+   Q
Sbjct: 6  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIATEGFKTLKEGQAVTFTVEQ 56


>gi|291534217|emb|CBL07330.1| cold-shock DNA-binding protein family [Megamonas hypermegale
          ART12/1]
          Length = 71

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG- 63
          G++KW+N  KGYGFIT +   +   D+F+H SA+ S G   L EGQ VT+D   +  +  
Sbjct: 4  GTVKWFNSGKGYGFITND---DGSGDLFVHFSAINSEGFKTLEEGQKVTFDTEADSRDAS 60

Query: 64 KYSAENLKLVP 74
          K  A N+ +V 
Sbjct: 61 KLRAVNVTVVK 71


>gi|126347669|emb|CAJ89383.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N +KG+GFI  +G    G DVF H S +A +G   LTEG+ VT++  Q  
Sbjct: 4  GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSEIAGSGYRELTEGEHVTFEIGQGQ 56


>gi|239940492|ref|ZP_04692429.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|239986973|ref|ZP_04707637.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
 gi|291443921|ref|ZP_06583311.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|291346868|gb|EFE73772.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S + ++G   L EGQ V++D  Q    G+
Sbjct: 4  GTVKWFNSEKGFGFIEQDG---GGADVFAHYSNINASGFRELQEGQKVSFDVTQ----GQ 56

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 57 KGPQAENIVP 66


>gi|260598404|ref|YP_003210975.1| RNA chaperone/anti-terminator [Cronobacter turicensis z3032]
 gi|260217581|emb|CBA31827.1| Cold shock protein cspA [Cronobacter turicensis z3032]
          Length = 70

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N DKG+GFITP   ++   DVF+H SA+ S     L EGQ V++  ++N A G
Sbjct: 7  GLVKWFNADKGFGFITPNDGSK---DVFVHFSAIQSDNFKTLDEGQQVSF-TIENGAKG 61


>gi|229526567|ref|ZP_04415971.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
 gi|229336725|gb|EEO01743.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
          Length = 72

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N  KG+GFITP+     G DVF+H +++AS G+  L E Q V +   Q
Sbjct: 9  GSVKWFNESKGFGFITPD---SGGSDVFVHFNSIASGGVKTLFEVQKVNFSIEQ 59


>gi|254282468|ref|ZP_04957436.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR51-B]
 gi|219678671|gb|EED35020.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR51-B]
          Length = 68

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI  EG    G DVF+H SA+   G   L++GQ V +      ANG+
Sbjct: 6  GTVKWFNETKGYGFIEQEG----GPDVFVHFSAIQGDGFKTLSDGQKVEFTV----ANGQ 57

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 58 KGPQAENVVP 67


>gi|21230878|ref|NP_636795.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|21242217|ref|NP_641799.1| major cold shock protein [Xanthomonas axonopodis pv. citri str.
          306]
 gi|66769123|ref|YP_243885.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|78047078|ref|YP_363253.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
 gi|188992271|ref|YP_001904281.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          B100]
 gi|289662980|ref|ZP_06484561.1| major cold shock protein [Xanthomonas campestris pv. vasculorum
          NCPPB702]
 gi|289670169|ref|ZP_06491244.1| major cold shock protein [Xanthomonas campestris pv. musacearum
          NCPPB4381]
 gi|325914001|ref|ZP_08176357.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325922910|ref|ZP_08184625.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
          19865]
 gi|325928751|ref|ZP_08189921.1| cold-shock DNA-binding protein family [Xanthomonas perforans
          91-118]
 gi|21107638|gb|AAM36335.1| major cold shock protein [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21112487|gb|AAM40719.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66574455|gb|AAY49865.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|78035508|emb|CAJ23154.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
 gi|167734031|emb|CAP52237.1| cold shock protein [Xanthomonas campestris pv. campestris]
 gi|325539770|gb|EGD11410.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325540919|gb|EGD12491.1| cold-shock DNA-binding protein family [Xanthomonas perforans
          91-118]
 gi|325546600|gb|EGD17739.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
          19865]
          Length = 71

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI    S E+G+DVF+H  A+   G  +L EGQ V++  VQ
Sbjct: 9  GVVKWFNDAKGFGFI----SRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQ 58


>gi|28199264|ref|NP_779578.1| cold shock protein [Xylella fastidiosa Temecula1]
 gi|71276139|ref|ZP_00652419.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon]
 gi|71898360|ref|ZP_00680533.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|71902362|ref|ZP_00684335.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|170730633|ref|YP_001776066.1| cold-shock DNA-binding domain-containing protein [Xylella
          fastidiosa M12]
 gi|182681990|ref|YP_001830150.1| cold-shock DNA-binding domain-containing protein [Xylella
          fastidiosa M23]
 gi|28057370|gb|AAO29227.1| cold shock protein [Xylella fastidiosa Temecula1]
 gi|71163057|gb|EAO12779.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon]
 gi|71727903|gb|EAO30135.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|71731883|gb|EAO33941.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|167965426|gb|ACA12436.1| putative cold-shock DNA-binding domain protein [Xylella
          fastidiosa M12]
 gi|182632100|gb|ACB92876.1| cold-shock DNA-binding domain protein [Xylella fastidiosa M23]
 gi|307578255|gb|ADN62224.1| cold shock protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW++  KG+GFI P+  T    +VF+H S + S G  +L EGQ VTYD  Q
Sbjct: 1  MQSGTVKWFSDQKGFGFILPDDGTP---EVFVHYSGINSKGFRSLHEGQRVTYDVTQ 54


>gi|311694048|gb|ADP96921.1| cold-shock DNA-binding domain protein [marine bacterium HP15]
          Length = 199

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI      +SGD+VF+H  A+   G   L +GQLV ++ V+ D
Sbjct: 135 GTVKWFNVKKGFGFIV----RDSGDEVFVHFRAIRGRGRRVLRQGQLVRFNVVEAD 186


>gi|300703253|ref|YP_003744855.1| cold shock-like protein cspd (csp-d) [Ralstonia solanacearum
          CFBP2957]
 gi|299070916|emb|CBJ42220.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum
          CFBP2957]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+P+   E G+++F H SA+   G   L EGQ V ++  Q
Sbjct: 4  GTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVVFEVTQ 54


>gi|300718875|ref|YP_003743678.1| Cold-shock DNA-binding protein family [Erwinia billingiae Eb661]
 gi|299064711|emb|CAX61831.1| Cold-shock DNA-binding protein family [Erwinia billingiae Eb661]
          Length = 70

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N DKG+GFI+PE  ++   DVF+H SA+ S     L EGQ V +  ++N A G
Sbjct: 7  GLVKWFNSDKGFGFISPEDGSK---DVFVHFSAIQSNDFKTLDEGQKVEF-TIENGAKG 61


>gi|226304760|ref|YP_002764718.1| cold shock protein [Rhodococcus erythropolis PR4]
 gi|229492328|ref|ZP_04386135.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|226183875|dbj|BAH31979.1| probable cold shock protein [Rhodococcus erythropolis PR4]
 gi|229320737|gb|EEN86551.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N +KG+GFI  EG    G DVF+H S +  +G  +L EGQ V ++  Q     
Sbjct: 3  QGSVKWFNGEKGFGFIEQEG---GGPDVFVHYSEIQGSGYKSLDEGQKVEFEIGQGQKGP 59

Query: 64 KYSAENLKLV 73
          +  A+N++ +
Sbjct: 60 Q--AQNVRAI 67


>gi|149911179|ref|ZP_01899804.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
 gi|149805780|gb|EDM65777.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
          Length = 68

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G++KW+N  KG+GFI      E+G DVF H SA+AS G   L EGQ V +
Sbjct: 5  QGTVKWFNEAKGFGFI----EQENGPDVFAHFSAIASEGFKTLVEGQKVEF 51


>gi|26987944|ref|NP_743369.1| cold-shock domain-contain protein [Pseudomonas putida KT2440]
 gi|24982656|gb|AAN66833.1|AE016312_4 cold-shock domain family protein [Pseudomonas putida KT2440]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  +  D
Sbjct: 26 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 77


>gi|119775105|ref|YP_927845.1| cold-shock DNA-binding domain-containing protein [Shewanella
          amazonensis SB2B]
 gi|119767605|gb|ABM00176.1| cold-shock DNA-binding protein family [Shewanella amazonensis
          SB2B]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI    + E+G DVF+H  A+ + G   L EGQ V++   Q     +
Sbjct: 6  GVVKWFNADKGFGFI----AQEAGPDVFVHFRAINTDGFKTLDEGQKVSFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 62 --AENVTVI 68


>gi|229819166|ref|YP_002880692.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
          12333]
 gi|229565079|gb|ACQ78930.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
          12333]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI PE   +   DVF H SA+ + G  +L E Q V +D  Q
Sbjct: 4  GTVKWFNAEKGFGFIAPE---DGSADVFAHYSAIVADGFRSLEENQRVEFDVTQ 54


>gi|71726094|gb|AAZ39217.1| cold shock transcription regulator [Janthinobacterium lividum]
 gi|323530566|gb|ADX95748.1| cold shock-like protein CspD [Janthinobacterium sp. Ant5-2]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFITP+   E G+D+F H SA+ S G  +L E Q V+++
Sbjct: 4  GIVKWFNDSKGFGFITPD---EGGEDLFAHFSAIQSNGFKSLQENQRVSFE 51


>gi|54298841|ref|YP_125210.1| hypothetical protein lpp2908 [Legionella pneumophila str. Paris]
 gi|53752626|emb|CAH14061.1| hypothetical protein lpp2908 [Legionella pneumophila str. Paris]
          Length = 71

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH-RSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N DKGYGFI+ +      DDVF+H RS V+SAG   L EGQ V +  V   A G
Sbjct: 7  GHVKWFNDDKGYGFISRDNGQ---DDVFVHFRSIVSSAGRKTLVEGQRVEF-LVTKGAKG 62

Query: 64 KYSAE 68
            + E
Sbjct: 63 LQAEE 67


>gi|7498487|pir||T20510 hypothetical protein F02E9.2b - Caenorhabditis elegans
          Length = 180

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS KW+N  KGYGF+  +    +G+D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 24 GSCKWFNVSKGYGFVIDD---ITGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 79


>gi|327481503|gb|AEA84813.1| cold-shock DNA-binding protein [Pseudomonas stutzeri DSM 4166]
          Length = 177

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SGDDVF+H  A+   G   L EGQ V +  +  D
Sbjct: 111 GTVKWFNTSKGFGFI----SRDSGDDVFVHFRAIRGEGHRILVEGQRVEFTIMMRD 162


>gi|126653234|ref|ZP_01725352.1| cold shock protein [Bacillus sp. B14905]
 gi|126589985|gb|EAZ84113.1| cold shock protein [Bacillus sp. B14905]
          Length = 66

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G +KW+N +KGYGFI      + G+DVF+H + +   G   L EGQ V++D V+
Sbjct: 1  MQHGIVKWFNNEKGYGFI----ECDDGEDVFVHFTGIQEEGFRTLEEGQKVSFDVVE 53


>gi|119945819|ref|YP_943499.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119864423|gb|ABM03900.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KG+GFI       SG DVF H SA+AS G   L EGQ V +   Q
Sbjct: 6  QGTVKWFNEAKGFGFI----EQASGPDVFAHFSAIASEGFKTLAEGQKVEFSVSQ 56


>gi|91224056|ref|ZP_01259319.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
 gi|269966375|ref|ZP_06180460.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          40B]
 gi|91190967|gb|EAS77233.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
 gi|269828962|gb|EEZ83211.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          40B]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GF++ +     G DVF+H +A+ S G   LTEGQ V+++  Q    GK
Sbjct: 6  GSVKWFNETKGFGFLSQD---NGGQDVFVHFNAIVSDGFKTLTEGQKVSFNVEQ----GK 58

Query: 65 YSAENLKLVP 74
             +  ++ P
Sbjct: 59 KGPQATEVTP 68


>gi|77362295|ref|YP_341869.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76877206|emb|CAI89423.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFI      ESG DVF H SA++  G   L EGQ V +   Q     +
Sbjct: 7  GSVKWFNEAKGFGFI----EQESGADVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKGPQ 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 --AENI 66


>gi|325273425|ref|ZP_08139677.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
 gi|324101438|gb|EGB99032.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
          Length = 86

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGF+  EG     DD+F H SA+   G   L  GQ VT+D +Q
Sbjct: 4  GKVKWFNNAKGYGFVNEEGKN---DDLFAHYSAIQMDGYKTLKAGQAVTFDVIQ 54


>gi|148272792|ref|YP_001222353.1| putative cold shock protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|170781984|ref|YP_001710316.1| cold shock protein [Clavibacter michiganensis subsp. sepedonicus]
 gi|147830722|emb|CAN01662.1| putative cold shock protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|169156552|emb|CAQ01703.1| cold shock protein [Clavibacter michiganensis subsp. sepedonicus]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI P+  T    DVF H SA+A+ G  +L E Q V ++  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIAPDNGTA---DVFAHYSAIATGGYKSLDENQKVEFEVAQGPKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENIR 65


>gi|186474053|ref|YP_001861395.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184196385|gb|ACC74349.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + GDD+F H S V   G  +L E Q V +D V+    GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGDDLFAHFSEVRVNGFKSLQENQRVKFD-VKQGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|71892224|ref|YP_277957.1| cold shock-like protein CspC [Candidatus Blochmannia
          pennsylvanicus str. BPEN]
 gi|71796330|gb|AAZ41081.1| cold shock-like protein [Candidatus Blochmannia pennsylvanicus
          str. BPEN]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G +KW+N  KG+GFITP   ++   DVF+H SA+   G   L+EGQ V ++
Sbjct: 5  KGQVKWFNESKGFGFITP---SDGSKDVFVHFSAIQGNGFKTLSEGQSVEFE 53


>gi|53804193|ref|YP_113979.1| cold shock protein [Methylococcus capsulatus str. Bath]
 gi|53757954|gb|AAU92245.1| cold shock protein [Methylococcus capsulatus str. Bath]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          V +G++KW+N  KGYGFI      ESG D+F+H  ++   G   L EGQ V++  VQ
Sbjct: 4  VQQGTVKWFNETKGYGFI----QRESGADLFVHFRSILGEGFKTLKEGQRVSFVEVQ 56


>gi|302808614|ref|XP_002986001.1| hypothetical protein SELMODRAFT_123455 [Selaginella
          moellendorffii]
 gi|300146149|gb|EFJ12820.1| hypothetical protein SELMODRAFT_123455 [Selaginella
          moellendorffii]
          Length = 63

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KG+GFITP+  +E   ++F+H+SA+ + G  +L EG++V +   Q +
Sbjct: 11 GKVKWFNVTKGFGFITPDDGSE---ELFVHQSAIFAEGFRSLREGEIVEFSVEQGE 63


>gi|300719018|ref|YP_003743821.1| Cold-shock DNA-binding domain protein [Erwinia billingiae Eb661]
 gi|299064854|emb|CAX61974.1| Cold-shock DNA-binding domain protein [Erwinia billingiae Eb661]
          Length = 70

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N DKG+GFI+P+  ++   DVF+H SA+ S     L EGQ V +  V+N A G
Sbjct: 7  GLVKWFNADKGFGFISPQDGSK---DVFVHFSAIQSNDFKTLDEGQTVQFS-VENGAKG 61


>gi|291279814|ref|YP_003496649.1| cold shock protein [Deferribacter desulfuricans SSM1]
 gi|290754516|dbj|BAI80893.1| cold shock protein [Deferribacter desulfuricans SSM1]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M   G++KW+N  KGYGFIT    +  G+DVF+H +A+   G  +L EG  V +D V+
Sbjct: 1  MSKTGTVKWFNDSKGYGFIT----SSDGNDVFVHFTAIKMDGFKSLKEGDQVQFDIVE 54


>gi|269216140|ref|ZP_06159994.1| cold shock protein B [Slackia exigua ATCC 700122]
 gi|269130399|gb|EEZ61477.1| cold shock protein B [Slackia exigua ATCC 700122]
          Length = 79

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++P+KGYGFI    S   G+D+F+H S +   G   L EG  V ++ V   +NGK
Sbjct: 16 GTVKWFSPEKGYGFI----SQADGEDLFVHFSEIKMDGYKTLEEGARVQFE-VTTGSNGK 70

Query: 65 YSAENL 70
            A N+
Sbjct: 71 LQASNV 76


>gi|238792393|ref|ZP_04636027.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909]
 gi|238728319|gb|EEQ19839.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909]
          Length = 72

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y  +Q+   G 
Sbjct: 9  GQVKWFNESKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYT-IQDSPRGP 64

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 65 AAANVVAL 72


>gi|89093060|ref|ZP_01166011.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp.
          MED92]
 gi|89082710|gb|EAR61931.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp.
          MED92]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M   G++KW+N +KG+GFI      E+G DVF+H SA+   G   L EGQ V +   Q
Sbjct: 1  MSTTGTVKWFNEEKGFGFI----EQENGPDVFVHFSAIQGDGFKTLAEGQKVEFSVTQ 54


>gi|254253023|ref|ZP_04946341.1| Cold shock protein [Burkholderia dolosa AUO158]
 gi|124895632|gb|EAY69512.1| Cold shock protein [Burkholderia dolosa AUO158]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+     GDD+F H S +   G   L EGQ V+Y+
Sbjct: 4  GTVKWFNDSKGFGFITPD---NGGDDLFAHFSEIRGDGFKTLAEGQKVSYE 51


>gi|254227848|ref|ZP_04921279.1| conserved domain protein [Vibrio sp. Ex25]
 gi|262395888|ref|YP_003287741.1| cold shock protein CspA [Vibrio sp. Ex25]
 gi|151939890|gb|EDN58717.1| conserved domain protein [Vibrio sp. Ex25]
 gi|262339482|gb|ACY53276.1| cold shock protein CspA [Vibrio sp. Ex25]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GF++ +     G DVF+H +A+ S G   LTEGQ V+++  Q    GK
Sbjct: 6  GSVKWFNETKGFGFLSQD---NGGQDVFVHFNAIVSDGFKTLTEGQKVSFNVEQ----GK 58

Query: 65 YSAENLKLVP 74
             +  ++ P
Sbjct: 59 KGPQATEVTP 68


>gi|229096187|ref|ZP_04227160.1| Cold shock-like protein cspB [Bacillus cereus Rock3-29]
 gi|229115142|ref|ZP_04244552.1| Cold shock-like protein cspB [Bacillus cereus Rock1-3]
 gi|228668282|gb|EEL23714.1| Cold shock-like protein cspB [Bacillus cereus Rock1-3]
 gi|228687147|gb|EEL41052.1| Cold shock-like protein cspB [Bacillus cereus Rock3-29]
          Length = 65

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  +G+    DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIEMDGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|229178110|ref|ZP_04305481.1| Cold shock-like protein cspB [Bacillus cereus 172560W]
 gi|228605240|gb|EEK62690.1| Cold shock-like protein cspB [Bacillus cereus 172560W]
          Length = 65

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG+    DDVF+H SA+   G   L +GQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGDGYKALEDGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|170696311|ref|ZP_02887442.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
 gi|170138792|gb|EDT06989.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
          Length = 67

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G+D+F H S + S G  +L E Q V+++ V+    GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRSEGFKSLQENQKVSFE-VKQGPKGK 59

Query: 65 YSAE 68
           +A+
Sbjct: 60 QAAD 63


>gi|315659813|ref|ZP_07912672.1| cold-shock protein [Staphylococcus lugdunensis M23590]
 gi|315495101|gb|EFU83437.1| cold-shock protein [Staphylococcus lugdunensis M23590]
          Length = 82

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N +KG+GFI      E G+DVF+H S +A  G   L EGQ V +D  +
Sbjct: 17 MNNGTVKWFNAEKGFGFI----EREDGNDVFVHFSGIAGEGYKTLEEGQKVEFDITE 69


>gi|120555467|ref|YP_959818.1| cold-shock DNA-binding domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120325316|gb|ABM19631.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei VT8]
          Length = 179

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI      +SGD++F+H  A+   G   L +GQLV ++ V+ D
Sbjct: 115 GTVKWFNVKKGFGFIV----RDSGDEIFVHFRAIRGRGRRVLRQGQLVRFNVVEAD 166


>gi|304391865|ref|ZP_07373807.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
 gi|303296094|gb|EFL90452.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
          Length = 69

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K+YN  KG+GFI P+   + G DVF+H +A+   GL  L+EGQ V+++   +  +GK
Sbjct: 4  GTVKFYNDTKGFGFIQPD---DGGKDVFVHATALERNGLTGLSEGQKVSFETDMDPRSGK 60

Query: 65 YSAENLK 71
           +   ++
Sbjct: 61 PAVSKIE 67


>gi|222056887|ref|YP_002539249.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
 gi|221566176|gb|ACM22148.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
          Length = 66

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 5/63 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      ++G+DVF+H SA+   G  +LTEG+ VT++ VQ    G 
Sbjct: 4  GTVKWFNDSKGFGFI----EQDNGEDVFVHFSAIMGDGFKSLTEGEAVTFE-VQKGPKGL 58

Query: 65 YSA 67
           +A
Sbjct: 59 QAA 61


>gi|296130972|ref|YP_003638222.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
 gi|296022787|gb|ADG76023.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
          Length = 67

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N +KG+GFI PE   + G DVF+H SA+ + G  +L E Q V +D
Sbjct: 4  GIVKWFNAEKGFGFIAPE---DGGPDVFVHYSAIQTQGYRSLEENQRVQFD 51


>gi|126666188|ref|ZP_01737168.1| Cold-shock DNA-binding protein [Marinobacter sp. ELB17]
 gi|126629510|gb|EBA00128.1| Cold-shock DNA-binding protein [Marinobacter sp. ELB17]
          Length = 196

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI      +SGD++F+H  A+  +G   L +GQLV +  +  DA+  
Sbjct: 132 GTVKWFNVKKGFGFIV----RDSGDEIFVHFRAIRGSGRRVLRQGQLVRFSVI--DADKG 185

Query: 65  YSAENLKLV 73
             A+N+ ++
Sbjct: 186 LQADNVSIL 194


>gi|146306295|ref|YP_001186760.1| cold-shock DNA-binding protein family protein [Pseudomonas
           mendocina ymp]
 gi|145574496|gb|ABP84028.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
          Length = 205

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SG+D+F+H  A+   G   L EGQ V +  +Q D
Sbjct: 138 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRVLIEGQRVEFSVMQRD 189


>gi|254249432|ref|ZP_04942752.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
 gi|124875933|gb|EAY65923.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
          Length = 67

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N +KG+GFITP+     GDD+F H S +   G   L EGQ V+Y+
Sbjct: 4  GTVKWFNDNKGFGFITPD---SGGDDLFAHFSEIRGDGFKMLAEGQKVSYE 51


>gi|269797859|ref|YP_003311759.1| cold-shock DNA-binding domain protein [Veillonella parvula DSM
          2008]
 gi|282848848|ref|ZP_06258238.1| cold-shock DNA-binding domain protein [Veillonella parvula ATCC
          17745]
 gi|294791752|ref|ZP_06756900.1| conserved domain protein [Veillonella sp. 6_1_27]
 gi|294793613|ref|ZP_06758750.1| conserved domain protein [Veillonella sp. 3_1_44]
 gi|269094488|gb|ACZ24479.1| cold-shock DNA-binding domain protein [Veillonella parvula DSM
          2008]
 gi|282581353|gb|EFB86746.1| cold-shock DNA-binding domain protein [Veillonella parvula ATCC
          17745]
 gi|294455183|gb|EFG23555.1| conserved domain protein [Veillonella sp. 3_1_44]
 gi|294456982|gb|EFG25344.1| conserved domain protein [Veillonella sp. 6_1_27]
          Length = 65

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW++ +KGYGFI      E G DVF+H SA+   G  +LTEGQ V ++ V
Sbjct: 3  GKVKWFSAEKGYGFI----EREDGSDVFVHYSAIQDEGFKSLTEGQNVEFEIV 51


>gi|116781927|gb|ABK22299.1| unknown [Picea sitchensis]
 gi|148909032|gb|ABR17619.1| unknown [Picea sitchensis]
 gi|224285091|gb|ACN40273.1| unknown [Picea sitchensis]
          Length = 205

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KGYGFITP+  +E   D+F+H++++ S G  +L EG+ V Y  V+++  G+
Sbjct: 8  GKVKWFDSTKGYGFITPDDGSE---DLFVHQTSIHSNGFRSLAEGEAVEYT-VEHENGGR 63

Query: 65 YSA 67
            A
Sbjct: 64 TKA 66


>gi|76577745|gb|ABA54143.1| putative glycine-rich protein [Picea glauca]
          Length = 156

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KGYGFITP+  +E   D+F+H++++ S G  +L EG+ V Y  V+++  G+
Sbjct: 8  GKVKWFDSTKGYGFITPDDGSE---DLFVHQTSIHSNGFRSLAEGEAVEYT-VEHENGGR 63

Query: 65 YSA 67
            A
Sbjct: 64 TKA 66


>gi|255318974|ref|ZP_05360199.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
 gi|262378290|ref|ZP_06071447.1| cold shock domain-containing protein CspD [Acinetobacter
          radioresistens SH164]
 gi|255303991|gb|EET83183.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
 gi|262299575|gb|EEY87487.1| cold shock domain-containing protein CspD [Acinetobacter
          radioresistens SH164]
          Length = 69

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V +G++KW+N  KG+GFI      ESG DVF H S + + G   L EGQ V +  V  D 
Sbjct: 4  VVKGTVKWFNETKGFGFI----QQESGPDVFAHYSEITNQGFKTLYEGQQVQFTVV--DG 57

Query: 62 NGKYSAENLKLV 73
               A N+ LV
Sbjct: 58 KKGPQASNITLV 69


>gi|300022389|ref|YP_003755000.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299524210|gb|ADJ22679.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 71

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K+YN  KGYGFI P+     G+DVF+H +AV  +G+  L EG  ++++  + D
Sbjct: 1  MRQTGTVKFYNSQKGYGFIKPD---TGGNDVFVHVTAVERSGIGELNEGMRISFE-TEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 KRGK 60


>gi|228991370|ref|ZP_04151325.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
 gi|228997469|ref|ZP_04157086.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|229008676|ref|ZP_04166076.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
 gi|228752529|gb|EEM02157.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
 gi|228762265|gb|EEM11194.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|228768300|gb|EEM16908.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
          Length = 67

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M   G +KW+N +KG+GFI      E G DVF+H SA+   G  +L EGQ V+++
Sbjct: 1  MTLTGKVKWFNSEKGFGFI----EVEDGSDVFVHFSAITGEGFKSLDEGQEVSFE 51


>gi|104783210|ref|YP_609708.1| cold shock protein CspE-like [Pseudomonas entomophila L48]
 gi|95112197|emb|CAK16924.1| putative cold shock protein CspE-like [Pseudomonas entomophila
          L48]
          Length = 69

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI  EG    G DVF+H  A+   G   L EGQ V Y  VQ
Sbjct: 7  GNVKWFNDAKGYGFIQREG----GADVFVHYRAIRGEGHRTLVEGQQVEYALVQ 56


>gi|238789632|ref|ZP_04633415.1| Cold shock-like protein cspD [Yersinia frederiksenii ATCC 33641]
 gi|238722185|gb|EEQ13842.1| Cold shock-like protein cspD [Yersinia frederiksenii ATCC 33641]
          Length = 85

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQ 54


>gi|253581856|ref|ZP_04859080.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
 gi|251836205|gb|EES64742.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
          Length = 65

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFIT     E G D+F H S +   G   L E + VTYD ++
Sbjct: 2  KGTVKWFNQEKGFGFITG----EDGKDIFAHFSQIQKDGFKTLNENEEVTYDVIE 52


>gi|256822338|ref|YP_003146301.1| cold-shock DNA-binding domain-containing protein [Kangiella
          koreensis DSM 16069]
 gi|256795877|gb|ACV26533.1| cold-shock DNA-binding domain protein [Kangiella koreensis DSM
          16069]
          Length = 68

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      E G+DVF+H  A+   G   L EGQ V +D  Q
Sbjct: 6  GTVKWFNESKGFGFI----EQEQGEDVFVHFRAIQGDGFKTLAEGQRVEFDIEQ 55


>gi|294787952|ref|ZP_06753196.1| putative cold-shock protein [Simonsiella muelleri ATCC 29453]
 gi|294484245|gb|EFG31928.1| putative cold-shock protein [Simonsiella muelleri ATCC 29453]
          Length = 67

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++
Sbjct: 4  GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFE 51


>gi|238794631|ref|ZP_04638237.1| Cold shock-like protein cspB [Yersinia intermedia ATCC 29909]
 gi|238726020|gb|EEQ17568.1| Cold shock-like protein cspB [Yersinia intermedia ATCC 29909]
          Length = 66

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 3  GLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IENGAKGP 58

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 59 AAANVIAL 66


>gi|238749794|ref|ZP_04611299.1| Cold shock-like protein cspD [Yersinia rohdei ATCC 43380]
 gi|238712449|gb|EEQ04662.1| Cold shock-like protein cspD [Yersinia rohdei ATCC 43380]
          Length = 85

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQ 54


>gi|207723599|ref|YP_002253998.1| cold shock-like protein cspd [Ralstonia solanacearum MolK2]
 gi|206588801|emb|CAQ35764.1| cold shock-like protein cspd [Ralstonia solanacearum MolK2]
          Length = 67

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+P+   E G+++F H SA+   G   L EGQ V ++  Q
Sbjct: 4  GTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMDGFKTLKEGQRVVFEVTQ 54


>gi|330502213|ref|YP_004379082.1| cold-shock DNA-binding protein family protein [Pseudomonas
           mendocina NK-01]
 gi|328916499|gb|AEB57330.1| cold-shock DNA-binding protein family protein [Pseudomonas
           mendocina NK-01]
          Length = 204

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SG+D+F+H  A+   G   L EGQ V +  +Q D
Sbjct: 137 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRVLIEGQRVEFSVMQRD 188


>gi|239832396|ref|ZP_04680725.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301]
 gi|239824663|gb|EEQ96231.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301]
          Length = 96

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N +KG+GFI P+   + G D+F+H SAV ++GL  L + Q V+Y+  + D
Sbjct: 26 MAQTGQVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLTGLADNQKVSYE-TEPD 81

Query: 61 ANGK 64
            GK
Sbjct: 82 RRGK 85


>gi|145347619|ref|XP_001418260.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578489|gb|ABO96553.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 106

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +KW+N  KG+GFI P   +E   ++F+H++ ++ AG  ++ EG+ V YD    D
Sbjct: 6  RGKVKWFNATKGFGFIIPHDGSE---EIFVHQTGISCAGFRSVWEGEEVEYDVDDTD 59


>gi|110834773|ref|YP_693632.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2]
 gi|110647884|emb|CAL17360.1| cold-shock domain family protein [Alcanivorax borkumensis SK2]
          Length = 76

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           RG +KW+NP+KG+GFI     T+SG+++F+H  AV + G  +L  G  V +D   +D
Sbjct: 11 QRGEVKWFNPNKGFGFIL----TDSGEELFVHFKAVQNGGRRSLRTGTKVRFDTRMSD 64


>gi|229592309|ref|YP_002874428.1| cold shock protein cspc [Pseudomonas fluorescens SBW25]
 gi|229364175|emb|CAY51835.1| cold shock protein cspc [Pseudomonas fluorescens SBW25]
          Length = 73

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 7  GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 61

Query: 65 YSAENLKLVPK 75
           + + +  +P+
Sbjct: 62 QAEDVIAALPR 72


>gi|188534694|ref|YP_001908491.1| Cold shock protein [Erwinia tasmaniensis Et1/99]
 gi|259909319|ref|YP_002649675.1| Cold shock protein [Erwinia pyrifoliae Ep1/96]
 gi|188029736|emb|CAO97615.1| Cold shock protein [Erwinia tasmaniensis Et1/99]
 gi|224964941|emb|CAX56469.1| Cold shock protein [Erwinia pyrifoliae Ep1/96]
 gi|283479388|emb|CAY75304.1| Cold shock-like protein cspG (CPS-G) [Erwinia pyrifoliae DSM
          12163]
 gi|310766775|gb|ADP11725.1| Cold shock protein [Erwinia sp. Ejp617]
          Length = 70

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI+P   T+   DVF+H SA+ + G   L EGQ V +  ++N   G 
Sbjct: 7  GLVKWFNAEKGFGFISP---TDGSKDVFVHFSAIQNGGFKTLEEGQKVEFT-IENGQKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|149374445|ref|ZP_01892219.1| Cold shock protein [Marinobacter algicola DG893]
 gi|149361148|gb|EDM49598.1| Cold shock protein [Marinobacter algicola DG893]
          Length = 193

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
             G++KW+N  KG+GFI      +SGD+VF+H  A+   G   L +GQLV +  V+ D
Sbjct: 127 EEGTVKWFNVKKGFGFIV----RDSGDEVFVHFRAIRGRGRRVLRQGQLVRFSVVEAD 180


>gi|71278873|ref|YP_267468.1| cold shock DNA-binding domain-containing protein [Colwellia
          psychrerythraea 34H]
 gi|71144613|gb|AAZ25086.1| cold-shock DNA-binding domain family protein [Colwellia
          psychrerythraea 34H]
          Length = 68

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58
          +G +KW+N DKG+GFITPE  ++   D+F+H S + S G +  L +GQ V Y+  Q
Sbjct: 3  KGIVKWFNSDKGFGFITPEDGSK---DLFVHHSEIQSGGEYATLADGQTVEYEVGQ 55


>gi|238789312|ref|ZP_04633099.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
 gi|238722644|gb|EEQ14297.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
          Length = 84

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y  +Q+   G 
Sbjct: 21 GQVKWFNEAKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYT-IQDSPRGP 76

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 77 AAANVIAL 84


>gi|297191503|ref|ZP_06908901.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197722057|gb|EDY65965.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q      
Sbjct: 4  GVVKWFNAEKGFGFIEQDGG---GPDVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|123441828|ref|YP_001005812.1| cold shock-like protein [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122088789|emb|CAL11595.1| cold shock-like protein [Yersinia enterocolitica subsp.
          enterocolitica 8081]
          Length = 85

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQ 54


>gi|308270250|emb|CBX26862.1| Cold shock-like protein cspLA [uncultured Desulfobacterium sp.]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      E+G DVF+H SA+ + G  +L+EG  VT++  Q
Sbjct: 4  GTVKWFNDQKGFGFI----EQENGPDVFVHHSAINATGFKSLSEGSHVTFEIEQ 53


>gi|281336080|gb|ADA62629.1| Cold shock protein CspC [Staphylococcus epidermidis]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW++ DKG+GFI      ++G+DVF+H S +A  G  +L EGQ V +D V+
Sbjct: 1  MNNGTVKWFHADKGFGFI----ERDNGNDVFVHYSVIAGEGYKSLEEGQNVDFDIVE 53


>gi|262200587|ref|YP_003271795.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
 gi|262083934|gb|ACY19902.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P+   E  DDVF+H S +  +G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIAPD---EGSDDVFVHYSEIQGSGFRTLEENQRVEFEVGQ 54


>gi|149377667|ref|ZP_01895403.1| cold-shock DNA-binding domain family protein [Marinobacter
          algicola DG893]
 gi|149358020|gb|EDM46506.1| cold-shock DNA-binding domain family protein [Marinobacter
          algicola DG893]
          Length = 68

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFIT EG    G DVF+H SA+  +G   L EGQ V +   Q     +
Sbjct: 6  GTVKFFNEAKGFGFITREG----GPDVFVHYSAIQGSGFKTLAEGQQVEFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+  +
Sbjct: 62 --AENVTAI 68


>gi|146309833|ref|YP_001174907.1| major cold shock protein [Enterobacter sp. 638]
 gi|261341820|ref|ZP_05969678.1| hypothetical protein ENTCAN_08306 [Enterobacter cancerogenus ATCC
          35316]
 gi|145316709|gb|ABP58856.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
 gi|288316195|gb|EFC55133.1| putative cold shock protein [Enterobacter cancerogenus ATCC
          35316]
          Length = 70

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ + G  +L EGQ V++  +++ A G 
Sbjct: 7  GLVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNEGYKSLDEGQKVSFT-IESGAKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 AAGNVVSL 70


>gi|15616931|ref|NP_240144.1| cold shock-like protein CspC [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|219681685|ref|YP_002468071.1| cold shock-like protein CspC [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
 gi|219682240|ref|YP_002468624.1| cold shock-like protein CspC [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|257471376|ref|ZP_05635375.1| cold shock-like protein CspC [Buchnera aphidicola str. LSR1
          (Acyrthosiphon pisum)]
 gi|11131708|sp|P57407|CSPC_BUCAI RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|25296148|pir||F84967 cold shock-like protein cspC [imported] - Buchnera sp.  (strain
          APS)
 gi|10038996|dbj|BAB13030.1| cold shock-like protein cspC [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|219621973|gb|ACL30129.1| cold shock-like protein CspC [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|219624528|gb|ACL30683.1| cold shock-like protein CspC [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
 gi|311086059|gb|ADP66141.1| cold shock-like protein CspC [Buchnera aphidicola str. LL01
          (Acyrthosiphon pisum)]
 gi|311086633|gb|ADP66714.1| cold shock-like protein CspC [Buchnera aphidicola str. TLW03
          (Acyrthosiphon pisum)]
 gi|311087216|gb|ADP67296.1| cold shock-like protein CspC [Buchnera aphidicola str. JF99
          (Acyrthosiphon pisum)]
 gi|311087737|gb|ADP67816.1| cold shock-like protein CspC [Buchnera aphidicola str. JF98
          (Acyrthosiphon pisum)]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP   ++   DVF+H S++   G   LTEGQ V ++ +Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---SDGSKDVFVHFSSIQGNGFKTLTEGQNVEFE-IQDGQKG 60


>gi|257468871|ref|ZP_05632965.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063120|ref|ZP_07927605.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688796|gb|EFS25631.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
          Length = 65

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFIT     E G D+F H S +   G   L E + VTYD ++
Sbjct: 2  KGTVKWFNQEKGFGFITG----EDGKDIFAHFSQIQKDGFKTLNENEEVTYDVIE 52


>gi|154253414|ref|YP_001414238.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
          lavamentivorans DS-1]
 gi|154157364|gb|ABS64581.1| putative cold-shock DNA-binding domain protein [Parvibaculum
          lavamentivorans DS-1]
          Length = 199

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G +KW++  KGYGFI PE     GDDV +H S +  AGL  L EG  VT + V+ 
Sbjct: 40 GVVKWFDAVKGYGFIIPE---NGGDDVLVHLSCLKQAGLEALDEGTTVTCEAVRR 91



 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           +KW+N  +GYGF+T     E   D+F+H   +   G+ +L  GQ +   +
Sbjct: 138 VKWFNRARGYGFVT---RGEGTPDIFIHMETLRRYGIRDLLPGQQINVRF 184


>gi|238792422|ref|ZP_04636056.1| Cold shock-like protein cspD [Yersinia intermedia ATCC 29909]
 gi|238728348|gb|EEQ19868.1| Cold shock-like protein cspD [Yersinia intermedia ATCC 29909]
          Length = 85

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQ 54


>gi|300787569|ref|YP_003767860.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
 gi|299797083|gb|ADJ47458.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
          Length = 315

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 5/56 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G+I WY P KGYGF +P+G    G D+F+H SA+ + G+  +TEGQ V +  V+ +
Sbjct: 81  GTINWYEPGKGYGFASPDG---GGADIFVHSSAIVTGGV--VTEGQRVAFLIVEGE 131



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60
          +G+++W++ ++G+GF+ PE   +   DVF+H S  V   G   L EGQ V ++  +ND
Sbjct: 3  QGTVRWFDAERGFGFLAPE---DDSPDVFVHASEIVGDGGAKVLREGQAVVFEVGEND 57



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           ++ WY+ DKG+GFI P+       DVF+H  A+A  GL  L EG  V Y+    D
Sbjct: 161 TVAWYDEDKGFGFINPD---SGAGDVFVHARALAE-GLTWLAEGDRVAYEVASGD 211



 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +  Y+ D+G+GFITP+     GDD+F H S +   G   L +G  V Y   Q+D
Sbjct: 254 GVVARYDGDRGFGFITPDA---GGDDLFAHASVI--MGSEPLQKGDRVRYAVRQSD 304


>gi|297560234|ref|YP_003679208.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296844682|gb|ADH66702.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  +G    G DVF H SA+ + G   L EGQ V +D  Q  A G 
Sbjct: 4  GKVKWFNGEKGFGFIEQDG---GGPDVFAHYSAIQANGYRELAEGQNVEFDVTQG-AKG- 58

Query: 65 YSAENLKLV 73
            A+N+ L+
Sbjct: 59 LQADNITLI 67


>gi|261345563|ref|ZP_05973207.1| conserved domain protein [Providencia rustigianii DSM 4541]
 gi|282566611|gb|EFB72146.1| conserved domain protein [Providencia rustigianii DSM 4541]
          Length = 70

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFITP   ++   DVF+H SA+ S     L EGQ V++  V++ A G 
Sbjct: 7  GLVKWFNDDKGFGFITPADGSK---DVFVHFSAIQSDDFKTLHEGQKVSFS-VESGAKGP 62

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 63 AAANVVAL 70


>gi|153874948|ref|ZP_02002962.1| Cold shock protein [Beggiatoa sp. PS]
 gi|152068588|gb|EDN67038.1| Cold shock protein [Beggiatoa sp. PS]
          Length = 71

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  E   E   DVF+H +++   G  +L EGQ VT D  Q      
Sbjct: 8  GTVKWFNDSKGFGFIEQE---EGQPDVFVHHTSIQGEGFKSLQEGQKVTMDVTQGQKG-- 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 LQAENV 68


>gi|119947299|ref|YP_944979.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119865903|gb|ABM05380.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KG+GFI       SG DVF H SA+AS G   L EGQ V +   Q
Sbjct: 6  QGTVKWFNEAKGFGFI----EQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQ 56


>gi|73542439|ref|YP_296959.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72119852|gb|AAZ62115.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI P+   E  +++F H SA+  AG   L EGQ V+++ VQ
Sbjct: 4  GIVKWFNDAKGFGFIKPD---EGEEELFAHFSAIQMAGFKTLKEGQRVSFEVVQ 54


>gi|148547058|ref|YP_001267160.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida F1]
 gi|148511116|gb|ABQ77976.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
          Length = 88

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  EG +   DD+F H SA+   G   L  GQ V +D VQ
Sbjct: 4  GKVKWFNNAKGYGFINEEGKS---DDLFAHYSAIRMDGYKTLKAGQAVVFDIVQ 54


>gi|310778745|ref|YP_003967078.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
 gi|309748068|gb|ADO82730.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFIT    +E G DVF H S +   G  +L EG+ VT++  +     +
Sbjct: 4  GTVKWFNAEKGFGFIT----SEDGTDVFAHFSEIQKDGFKSLEEGEQVTFEITKGQKGPQ 59

Query: 65 YSAENLKLV 73
            A N+K V
Sbjct: 60 --ASNIKTV 66


>gi|302131878|ref|ZP_07257868.1| cold shock protein [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 47

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 4/45 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
          G++KW+N +KG+GFITP    +SGDD+F+H  A+ S G  +L EG
Sbjct: 7  GTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEG 47


>gi|293402171|ref|ZP_06646309.1| cold shock protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304278|gb|EFE45529.1| cold shock protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N DKG+GFIT    ++ G+D+F+H + +   G   L EG  V++D   ND
Sbjct: 4  GKVKWFNADKGFGFIT----SDEGNDIFVHYTEIQGNGFRTLEEGAKVSFDIKTND 55


>gi|269468409|gb|EEZ80074.1| cold shock protein [uncultured SUP05 cluster bacterium]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW++  KG+GFI      ESGDDVF+H  A+   G  +L EGQ V +D +++ 
Sbjct: 1  MSTTGKVKWFDAKKGFGFI----EQESGDDVFVHFRAIQGDGYKSLEEGQEVVFD-LEDG 55

Query: 61 ANGKYSA 67
          A G  +A
Sbjct: 56 AKGPQAA 62


>gi|256391325|ref|YP_003112889.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256357551|gb|ACU71048.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KGYGFI  +G    G DVF+H SA+  +G  NL E Q V ++  Q
Sbjct: 4  GTVKWFNGEKGYGFIAQDG---GGPDVFVHFSAIEGSGYRNLEENQPVEFEITQ 54


>gi|145294439|ref|YP_001137260.1| hypothetical protein cgR_0394 [Corynebacterium glutamicum R]
 gi|140844359|dbj|BAF53358.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+NP+KG+GFI P   ++   DVF+H S +   G   L E QLV ++
Sbjct: 3  QGTVKWFNPEKGFGFIAP---SDGSADVFVHYSEIQGNGFRTLEENQLVEFE 51


>gi|104783080|ref|YP_609578.1| cold shock protein [Pseudomonas entomophila L48]
 gi|95112067|emb|CAK16794.1| putative cold shock protein [Pseudomonas entomophila L48]
          Length = 196

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  +  D
Sbjct: 131 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMHRD 182


>gi|25026862|ref|NP_736916.1| putative cold shock protein [Corynebacterium efficiens YS-314]
 gi|259506076|ref|ZP_05748978.1| cold shock protein [Corynebacterium efficiens YS-314]
 gi|23492142|dbj|BAC17116.1| putative cold shock protein [Corynebacterium efficiens YS-314]
 gi|259166364|gb|EEW50918.1| cold shock protein [Corynebacterium efficiens YS-314]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+NP+KG+GFI P   ++   DVF+H S +   G   L E QLV ++
Sbjct: 3  QGTVKWFNPEKGFGFIAP---SDGSADVFVHYSEIEGNGFRTLEENQLVEFE 51


>gi|329296326|ref|ZP_08253662.1| Cold shock-like protein cspC [Plautia stali symbiont]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLVEGQRVEFE-IQDGQKG 60


>gi|311897073|dbj|BAJ29481.1| putative cold shock protein [Kitasatospora setae KM-6054]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S + ++G   L EGQ V +D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNINASGFRELLEGQKVEFDVTQGQKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENIR 65


>gi|94968551|ref|YP_590599.1| cold-shock DNA-binding protein family protein [Candidatus
          Koribacter versatilis Ellin345]
 gi|94550601|gb|ABF40525.1| cold-shock DNA-binding protein family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KGYGFI      E G DVF+H SA++S G  +L EG  V ++ V+
Sbjct: 2  KGTVKWFNNAKGYGFI----GREEGPDVFVHYSAISSEGYKSLAEGDAVEFEIVE 52


>gi|123444003|ref|YP_001007973.1| major cold shock protein [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|332163163|ref|YP_004299740.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|1778828|gb|AAB40924.1| major cold shock protein CSPA2 [Yersinia enterocolitica]
 gi|122090964|emb|CAL13846.1| major cold shock protein [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|318603953|emb|CBY25451.1| cold shock protein CspG [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|325667393|gb|ADZ44037.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330862836|emb|CBX72977.1| cold shock-like protein cspB [Yersinia enterocolitica W22703]
          Length = 70

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFITP    +   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IENGAKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 SAVNVIAL 70


>gi|125974357|ref|YP_001038267.1| cold-shock DNA-binding protein family protein [Clostridium
          thermocellum ATCC 27405]
 gi|256005564|ref|ZP_05430524.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
          DSM 2360]
 gi|281418904|ref|ZP_06249922.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
          JW20]
 gi|125714582|gb|ABN53074.1| cold-shock DNA-binding protein family [Clostridium thermocellum
          ATCC 27405]
 gi|255990472|gb|EEU00594.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
          DSM 2360]
 gi|281407361|gb|EFB37621.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
          JW20]
 gi|316941515|gb|ADU75549.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
          DSM 1313]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + RG +KW+N +KG+GFI  EG    G DVF+H SA+   G   L EG  V ++ V+
Sbjct: 1  MERGRVKWFNAEKGFGFIEREG----GKDVFVHFSAINMDGYKTLEEGAEVEFEVVE 53


>gi|255020707|ref|ZP_05292768.1| cold-shock protein CspE [Acidithiobacillus caldus ATCC 51756]
 gi|254969861|gb|EET27362.1| cold-shock protein CspE [Acidithiobacillus caldus ATCC 51756]
          Length = 62

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +KW+N  KG+GFITPE   E   DVF+H SA+   G   L EG+ V+++  +
Sbjct: 1  MKWFNDSKGFGFITPEDGKE---DVFVHHSAIEGTGFKTLAEGERVSFEVTR 49


>gi|152975554|ref|YP_001375071.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152024306|gb|ABS22076.1| putative cold-shock DNA-binding domain protein [Bacillus
          cytotoxicus NVH 391-98]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M   G +KW+N +KG+GFI      E G+DVF+H SA+   G   L EGQ V ++
Sbjct: 1  MTLTGKVKWFNSEKGFGFI----EVEDGNDVFVHFSAITGEGFKTLDEGQEVNFE 51


>gi|313498101|gb|ADR59467.1| Cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida BIRD-1]
          Length = 88

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  EG +   DD+F H SA+   G   L  GQ V +D VQ
Sbjct: 4  GKVKWFNNAKGYGFINEEGKS---DDLFAHYSAIRMDGYKTLKAGQAVIFDIVQ 54


>gi|294635687|ref|ZP_06714158.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
 gi|291090958|gb|EFE23519.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
          Length = 71

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          GS+KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +  V+N   G
Sbjct: 7  GSVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNEFRTLDEGQKVEFS-VENSPKG 61


>gi|160894675|ref|ZP_02075450.1| hypothetical protein CLOL250_02226 [Clostridium sp. L2-50]
 gi|156863609|gb|EDO57040.1| hypothetical protein CLOL250_02226 [Clostridium sp. L2-50]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KGYGFI    S E+GDD+F+H SA+  +G   L EG  V ++ ++ +
Sbjct: 4  GTVKWFNAKKGYGFI----SDENGDDIFVHFSALNMSGFKVLEEGDKVEFEVIEGE 55


>gi|119944064|ref|YP_941744.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119862668|gb|ABM02145.1| cold shock protein E (CspE) [Psychromonas ingrahamii 37]
          Length = 68

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KG+GFI       SG DVF H SA++S G   L EGQ V +   Q
Sbjct: 5  QGTVKWFNESKGFGFI----EQASGPDVFAHFSAISSEGFKTLAEGQKVEFTITQ 55


>gi|17986781|ref|NP_539415.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M]
 gi|148560167|ref|YP_001259392.1| cold-shock family protein [Brucella ovis ATCC 25840]
 gi|225627956|ref|ZP_03785992.1| cold shock protein CSPA [Brucella ceti str. Cudo]
 gi|237815906|ref|ZP_04594903.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
 gi|297248787|ref|ZP_06932505.1| cold-shock family protein [Brucella abortus bv. 5 str. B3196]
 gi|306843139|ref|ZP_07475759.1| cold shock protein [Brucella sp. BO2]
 gi|17982411|gb|AAL51679.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M]
 gi|148371424|gb|ABQ61403.1| cold-shock family protein [Brucella ovis ATCC 25840]
 gi|225617119|gb|EEH14165.1| cold shock protein CSPA [Brucella ceti str. Cudo]
 gi|237789204|gb|EEP63415.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
 gi|297175956|gb|EFH35303.1| cold-shock family protein [Brucella abortus bv. 5 str. B3196]
 gi|306286662|gb|EFM58220.1| cold shock protein [Brucella sp. BO2]
          Length = 83

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N +KG+GFI P+   + G D+F+H SAV ++GL  L + Q V+Y+  + D
Sbjct: 13 MAQTGQVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLPGLADNQKVSYE-TEPD 68

Query: 61 ANGK 64
            GK
Sbjct: 69 RRGK 72


>gi|19551558|ref|NP_599560.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
 gi|62389205|ref|YP_224607.1| cold-shock protein CspA [Corynebacterium glutamicum ATCC 13032]
 gi|21323072|dbj|BAB97701.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032]
 gi|41324538|emb|CAF18878.1| COLD-SHOCK PROTEIN CSPA [Corynebacterium glutamicum ATCC 13032]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+NP+KG+GFI P   ++   DVF+H S +   G   L E QLV ++
Sbjct: 3  QGTVKWFNPEKGFGFIAP---SDGSADVFVHYSEIEGNGFRTLEENQLVEFE 51


>gi|328884096|emb|CCA57335.1| Cold shock protein CspA [Streptomyces venezuelae ATCC 10712]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G  +L EGQ V ++  Q
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRSLEEGQRVEFEISQ 53


>gi|323160675|gb|EFZ46614.1| cold shock-like protein cspG [Escherichia coli E128010]
          Length = 70

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 41/59 (69%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ + G  +L EGQ V++  +++ A G
Sbjct: 7  GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSFS-IESGAKG 61


>gi|308274610|emb|CBX31209.1| Cold shock-like protein cspE [uncultured Desulfobacterium sp.]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N  KG+GFI      E G DVF+H SA+  +G   L EG  V++D  Q
Sbjct: 3  KGIVKWFNDKKGFGFI----EKEEGGDVFVHHSAITMSGFRTLAEGDRVSFDVEQ 53


>gi|194290614|ref|YP_002006521.1| cold shock protein, RNA chaperone, transcription antiterminator,
          affects expression of rpos and uspa [Cupriavidus
          taiwanensis LMG 19424]
 gi|193224449|emb|CAQ70460.1| cold shock protein, RNA chaperone, transcription antiterminator,
          affects expression of rpoS and uspA [Cupriavidus
          taiwanensis LMG 19424]
          Length = 68

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI P+   E  +++F H SA+  AG   L EGQ V+++ VQ
Sbjct: 4  GIVKWFNDAKGFGFIKPD---EGEEELFAHFSAIQMAGFKTLKEGQRVSFEVVQ 54


>gi|188996315|ref|YP_001930566.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
          YO3AOP1]
 gi|225848260|ref|YP_002728423.1| hypothetical protein SULAZ_0431 [Sulfurihydrogenibium azorense
          Az-Fu1]
 gi|188931382|gb|ACD66012.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
          YO3AOP1]
 gi|225643394|gb|ACN98444.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 68

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFIT +   +   DVF+H SA+ S G   L EGQ V ++  Q++   K
Sbjct: 5  GTVKWFNSKKGFGFITRD---DGQGDVFVHFSAIQSRGFKTLEEGQKVEFEIAQDEKGPK 61


>gi|153006879|ref|YP_001381204.1| cold-shock DNA-binding domain-containing protein
          [Anaeromyxobacter sp. Fw109-5]
 gi|152030452|gb|ABS28220.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
          sp. Fw109-5]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFIT +     G+DVF H +A+ + G   L EGQ V +D  +
Sbjct: 4  GTVKWFNDAKGFGFITQD---SGGEDVFCHHTAINAQGFRTLAEGQKVEFDVTK 54


>gi|148546481|ref|YP_001266583.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
           putida F1]
 gi|148510539|gb|ABQ77399.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
          Length = 197

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  +  D
Sbjct: 132 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 183


>gi|262372339|ref|ZP_06065618.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
 gi|262312364|gb|EEY93449.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
          Length = 73

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI     +++G DVF H S +A+ G   L EGQ V +D +Q
Sbjct: 7  GTVKWFNETKGFGFI----QSDNGQDVFAHYSEIANNGFKTLFEGQRVKFDVMQ 56


>gi|254514015|ref|ZP_05126076.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR5-3]
 gi|219676258|gb|EED32623.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR5-3]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      +SG DVF H SA+  +G   L EGQ V +   Q     +
Sbjct: 7  GTVKWFNESKGFGFI----EQKSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 63 --AENIVAV 69


>gi|160880077|ref|YP_001559045.1| cold-shock DNA-binding domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160428743|gb|ABX42306.1| cold-shock DNA-binding domain protein [Clostridium
          phytofermentans ISDg]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N  KG+GFI    S E G+DVF+H S +A  G   L +GQ VT++
Sbjct: 1  MKKGTVKWFNSQKGFGFI----SDEQGNDVFVHYSGLAMDGFKTLEDGQSVTFE 50


>gi|238784506|ref|ZP_04628514.1| Cold shock-like protein cspD [Yersinia bercovieri ATCC 43970]
 gi|238714569|gb|EEQ06573.1| Cold shock-like protein cspD [Yersinia bercovieri ATCC 43970]
          Length = 85

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQ 54


>gi|56807801|ref|ZP_00365651.1| COG1278: Cold shock proteins [Streptococcus pyogenes M49 591]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 4/49 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          +G++KW+N +KG+GFI    STE+G DVF H SA+ + G   L EGQ V
Sbjct: 5  QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQANGSKTLEEGQKV 49


>gi|291285780|ref|YP_003502598.1| Cold shock-like protein cspI [Escherichia coli O55:H7 str.
          CB9615]
 gi|331666067|ref|ZP_08366961.1| conserved domain protein [Escherichia coli TA143]
 gi|331680509|ref|ZP_08381168.1| conserved domain protein [Escherichia coli H591]
 gi|290765653|gb|ADD59614.1| Cold shock-like protein cspI [Escherichia coli O55:H7 str.
          CB9615]
 gi|323190384|gb|EFZ75660.1| cold shock-like protein cspI [Escherichia coli RN587/1]
 gi|324112028|gb|EGC06006.1| cold-shock DNA-binding domain-containing protein [Escherichia
          fergusonii B253]
 gi|325499892|gb|EGC97751.1| Cold shock-like protein cspI [Escherichia fergusonii ECD227]
 gi|331057118|gb|EGI29112.1| conserved domain protein [Escherichia coli TA143]
 gi|331071972|gb|EGI43308.1| conserved domain protein [Escherichia coli H591]
          Length = 70

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP+KG+GFITP+  ++   DVF+H SA+ S     LTE Q V +  ++N   G 
Sbjct: 7  GLVKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFKTLTENQQVEFG-IENGPKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 AAVHVVAL 70


>gi|77917987|ref|YP_355802.1| cold shock protein [Pelobacter carbinolicus DSM 2380]
 gi|77544070|gb|ABA87632.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
          DSM 2380]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      ++G DVF+H SA+   G  +L EG  V++D VQ    G
Sbjct: 3  EGTVKWFNDAKGFGFI----EQDNGPDVFVHFSAIQGEGFKSLAEGDRVSFDVVQGQ-KG 57

Query: 64 KYSAENLKL 72
            SA   K+
Sbjct: 58 PQSANVCKI 66


>gi|28871129|ref|NP_793748.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|66044651|ref|YP_234492.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|71734613|ref|YP_275919.1| cold shock domain-contain protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|302064187|ref|ZP_07255728.1| cold-shock domain-contain protein [Pseudomonas syringae pv.
          tomato K40]
 gi|28854379|gb|AAO57443.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|63255358|gb|AAY36454.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|71555166|gb|AAZ34377.1| cold shock domain family protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|320329669|gb|EFW85658.1| cold-shock domain-containing protein [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330892234|gb|EGH24895.1| cold-shock domain-containing protein [Pseudomonas syringae pv.
          mori str. 301020]
 gi|331009339|gb|EGH89395.1| cold-shock domain-containing protein [Pseudomonas syringae pv.
          tabaci ATCC 11528]
          Length = 73

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 7  GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 61

Query: 65 YSAENLKLVPK 75
           + + +  +P+
Sbjct: 62 QAEDVIAALPR 72


>gi|330872660|gb|EGH06809.1| cold-shock protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 106

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 40  GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 94

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 95  QAEDVIAALPR 105


>gi|328953011|ref|YP_004370345.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
          DSM 11109]
 gi|328453335|gb|AEB09164.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
          DSM 11109]
          Length = 68

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M   G +KW+N  KG+GFI    S E+G DVF+H S++ S G  +L+E   V ++ VQ
Sbjct: 1  MKETGRVKWFNDSKGFGFI----SRENGPDVFVHHSSIQSKGFRSLSENDEVEFEVVQ 54


>gi|294470716|gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum]
          Length = 295

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G + W++  KGYGFITP+   + GD++F+H+S++ S G  +LT G+ V Y
Sbjct: 13 GKVNWFSDGKGYGFITPD---DGGDELFVHQSSIVSDGFRSLTVGESVEY 59


>gi|283787799|ref|YP_003367664.1| cold shock protein [Citrobacter rodentium ICC168]
 gi|282951253|emb|CBG90947.1| cold shock protein [Citrobacter rodentium ICC168]
          Length = 70

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ + G  +L EGQ V++
Sbjct: 7  GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 53


>gi|119503460|ref|ZP_01625543.1| Cold shock protein [marine gamma proteobacterium HTCC2080]
 gi|119460522|gb|EAW41614.1| Cold shock protein [marine gamma proteobacterium HTCC2080]
          Length = 68

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI  EG    G DVF+H SA+   G   LT+GQ V +      A G+
Sbjct: 6  GTVKWFNETKGYGFIEQEG----GPDVFVHFSAIQGDGFKTLTDGQKVQFTV----ATGQ 57

Query: 65 YSAENLKLVP 74
             +   +VP
Sbjct: 58 KGPQAENVVP 67


>gi|320160229|ref|YP_004173453.1| cold shock protein [Anaerolinea thermophila UNI-1]
 gi|319994082|dbj|BAJ62853.1| cold shock protein [Anaerolinea thermophila UNI-1]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N +KGYGFI    S E+G DVF+H SA+   G  +L EGQ V +
Sbjct: 7  GTVKWFNSEKGYGFI----SRENGPDVFVHYSAIEGNGYRSLNEGQTVEF 52


>gi|313497560|gb|ADR58926.1| Cold-shock DNA-binding domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 197

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  +  D
Sbjct: 132 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 183


>gi|300855138|ref|YP_003780122.1| cold-shock protein [Clostridium ljungdahlii DSM 13528]
 gi|300435253|gb|ADK15020.1| cold-shock protein [Clostridium ljungdahlii DSM 13528]
          Length = 65

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFIT     E G D+F H S + S G   L EGQ V+YD  Q     +
Sbjct: 3  GTVKWFNGEKGFGFITG----EDGKDIFAHFSQINSDGYKTLEEGQKVSYDEGQGQKGPQ 58

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 59 --AENITVL 65


>gi|238749763|ref|ZP_04611268.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380]
 gi|238712418|gb|EEQ04631.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y  +Q+   G 
Sbjct: 6  GQVKWFNEAKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYT-IQDSPRGP 61

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 62 AAANVIAL 69


>gi|331091468|ref|ZP_08340306.1| cold shock protein cspA [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330404024|gb|EGG83574.1| cold shock protein cspA [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGFI    S E+G+DVF+H + +   G  +L EGQ V ++ +   A
Sbjct: 1  MNKGTVKWFNNQKGYGFI----SDEAGNDVFVHYTGLNMEGFKSLEEGQAVEFE-ITEGA 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 KGPQAVNVVKL 66


>gi|308178448|ref|YP_003917854.1| cold shock protein [Arthrobacter arilaitensis Re117]
 gi|307745911|emb|CBT76883.1| cold shock protein [Arthrobacter arilaitensis Re117]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 5/55 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFI P    +SGD DVF H SA+ + G   L EGQ V ++ V+
Sbjct: 4  GIVKWFNAEKGFGFIAP----DSGDPDVFAHFSAIQTQGFRTLDEGQKVEFEVVE 54


>gi|307328240|ref|ZP_07607418.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306886074|gb|EFN17082.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D
Sbjct: 4  GTVKWFNAAKGFGFIEQDGG---GADVFAHFSNIAAEGFRELLEGQKVTFD 51


>gi|294630012|ref|ZP_06708572.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292833345|gb|EFF91694.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G  +L EGQ V ++  Q
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRSLEEGQRVEFEISQ 53


>gi|289523010|ref|ZP_06439864.1| putative cold shock protein [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
 gi|289503553|gb|EFD24717.1| putative cold shock protein [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
          Length = 65

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFIT    +E G DVF+H SA+   G   L EG  V ++ V+
Sbjct: 3  GTVKWFNATKGYGFIT----SEDGKDVFVHYSAIDMKGFKTLEEGDKVEFEVVE 52


>gi|302519359|ref|ZP_07271701.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
 gi|318056421|ref|ZP_07975144.1| cold-shock protein [Streptomyces sp. SA3_actG]
 gi|318077529|ref|ZP_07984861.1| cold-shock protein [Streptomyces sp. SA3_actF]
 gi|302428254|gb|EFL00070.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +++ G   L EGQ V +D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNISAQGFRELLEGQKVNFDIAQGQKG-- 58

Query: 65 YSAENL 70
           +AEN+
Sbjct: 59 PTAENI 64


>gi|257068250|ref|YP_003154505.1| cold-shock DNA-binding protein family [Brachybacterium faecium
          DSM 4810]
 gi|256559068|gb|ACU84915.1| cold-shock DNA-binding protein family [Brachybacterium faecium
          DSM 4810]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +GS+KW+N +KGYGFI  +G    G DVF+H S +   G   L EGQ V ++  Q D
Sbjct: 3  QGSVKWFNAEKGYGFIEIDG---GGADVFVHHSKIDMDGYRALDEGQRVEFEVSQGD 56


>gi|256826371|ref|YP_003150331.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM
          20547]
 gi|256689764|gb|ACV07566.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM
          20547]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N +KG+GFI  +G    GDDVF+H SA+ + G  +L E Q V ++  Q
Sbjct: 3  QGIVKWFNAEKGFGFIQQDG---GGDDVFVHFSAIQTNGYRSLEENQRVEFEITQ 54


>gi|161505814|ref|YP_001572926.1| major cold shock protein [Salmonella enterica subsp. arizonae
          serovar 62:z4,z23:-- str. RSK2980]
 gi|160867161|gb|ABX23784.1| hypothetical protein SARI_03990 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 70

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ + G  +L EGQ V++
Sbjct: 7  GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 53


>gi|167035202|ref|YP_001670433.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166861690|gb|ABZ00098.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
          Length = 197

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  +  D
Sbjct: 132 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 183


>gi|328545164|ref|YP_004305273.1| cold shock-like transcription regulator protein [polymorphum
          gilvum SL003B-26A1]
 gi|326414906|gb|ADZ71969.1| Putative cold shock-like transcription regulator protein
          [Polymorphum gilvum SL003B-26A1]
          Length = 70

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+IK++N D+G+GFITPE     G DVF+H SA   AGL    EG  VT+   ++D
Sbjct: 1  MRENGTIKFFNYDRGFGFITPE---NGGKDVFVHISAFEQAGLPAPEEGAKVTF-VAEDD 56

Query: 61 ANGK 64
            G+
Sbjct: 57 RRGR 60


>gi|170723167|ref|YP_001750855.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
           putida W619]
 gi|169761170|gb|ACA74486.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
          Length = 197

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  +  D
Sbjct: 132 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 183


>gi|325274567|ref|ZP_08140625.1| cold-shock protein [Pseudomonas sp. TJI-51]
 gi|324100294|gb|EGB98082.1| cold-shock protein [Pseudomonas sp. TJI-51]
          Length = 197

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  +  D
Sbjct: 132 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 183


>gi|262372451|ref|ZP_06065730.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
 gi|262312476|gb|EEY93561.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
          Length = 70

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI   G    GDDVF+H  A+   G  +L +GQ V +  VQ     
Sbjct: 6  QGVVKWFNDTKGFGFIQRNG----GDDVFVHFRAIVGEGHRSLRDGQRVEFSVVQGQKG- 60

Query: 64 KYSAENLK 71
           + AEN++
Sbjct: 61 -FQAENVQ 67


>gi|254283369|ref|ZP_04958337.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR51-B]
 gi|219679572|gb|EED35921.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR51-B]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      +SG DVF H SA+  +G   L EGQ V +   Q     +
Sbjct: 7  GTVKWFNESKGFGFI----EQKSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 63 --AENIVAV 69


>gi|169796701|ref|YP_001714494.1| cold shock-like protein [Acinetobacter baumannii AYE]
 gi|215484188|ref|YP_002326415.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
 gi|169149628|emb|CAM87518.1| cold shock-like protein [Acinetobacter baumannii AYE]
 gi|213987146|gb|ACJ57445.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 8/71 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      +SG DVF H   +A++G   L EGQ VT++  Q    G+
Sbjct: 7  GTVKWFNETKGFGFI----QQDSGPDVFAHFKEIATSGFKTLYEGQRVTFNITQ----GQ 58

Query: 65 YSAENLKLVPK 75
               + ++P+
Sbjct: 59 KGPNAVNIIPQ 69


>gi|108759696|ref|YP_631543.1| CspA family cold-shock protein [Myxococcus xanthus DK 1622]
 gi|108463576|gb|ABF88761.1| cold-shock protein, CspA family [Myxococcus xanthus DK 1622]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +G    G+D+F H +A+ + G   L EGQ V +D  +      
Sbjct: 4  GTVKWFNDAKGFGFIMQDG---GGEDLFCHHTAIQTQGFRTLQEGQKVEFDVARGPKG-- 58

Query: 65 YSAENLKLV 73
            A+N++ V
Sbjct: 59 LQAQNVRPV 67


>gi|326445076|ref|ZP_08219810.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
          Length = 68

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S +A +G   L EG LV +D  Q     +
Sbjct: 4  GTVKWFNAEKGFGFIQQDG---GGPDVFAHYSNIAGSGYRELHEGDLVNFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|308504936|ref|XP_003114651.1| CRE-LIN-28 protein [Caenorhabditis remanei]
 gi|308258833|gb|EFP02786.1| CRE-LIN-28 protein [Caenorhabditis remanei]
          Length = 208

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS KW+N  KGYGF+  + + E   D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 24 GSCKWFNVSKGYGFVIDDITRE---DLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 79


>gi|242239458|ref|YP_002987639.1| cold shock-like protein CspC [Dickeya dadantii Ech703]
 gi|242131515|gb|ACS85817.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGTGFKTLAEGQNVEFE-IQDGQKG 60


>gi|197118603|ref|YP_002139030.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|253700626|ref|YP_003021815.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
 gi|197087963|gb|ACH39234.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|251775476|gb|ACT18057.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+      E+G+DVF+H SA+   G  +LTEG  VT++ V+
Sbjct: 4  GTVKWFNDSKGFGFL----EQENGEDVFVHFSAINGDGFKSLTEGDSVTFEIVK 53


>gi|167564263|ref|ZP_02357179.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
          EO147]
 gi|167571414|ref|ZP_02364288.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
          C6786]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITPEG    G+D+F H S + S G   L E Q V ++
Sbjct: 4  GTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRSEGFKTLQENQKVEFE 51


>gi|254248343|ref|ZP_04941663.1| Cold shock protein [Burkholderia cenocepacia PC184]
 gi|124874844|gb|EAY64834.1| Cold shock protein [Burkholderia cenocepacia PC184]
          Length = 83

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           V  G++KW+N  KG+GFI+P+     GDD+F H S +   G   L EGQ V+++
Sbjct: 16 FVDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSFE 67


>gi|94971209|ref|YP_593257.1| cold-shock DNA-binding protein family protein [Candidatus
          Koribacter versatilis Ellin345]
 gi|94553259|gb|ABF43183.1| cold-shock DNA-binding protein family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M  +G++KW+N  KGYGFI       +G+DVF+H SA+   G   L EG+ V +D ++
Sbjct: 1  MREKGTVKWFNGAKGYGFI----QRSTGEDVFVHFSAIQENGYRTLNEGETVEFDLLK 54


>gi|331016432|gb|EGH96488.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 106

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 40  GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 94

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 95  QAEDVIAALPR 105


>gi|296100584|ref|YP_003610730.1| major cold shock protein [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|295055043|gb|ADF59781.1| major cold shock protein [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|295095151|emb|CBK84241.1| cold-shock DNA-binding protein family [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 70

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ + G  +L EGQ V++
Sbjct: 7  GLVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 53


>gi|220930266|ref|YP_002507175.1| cold-shock DNA-binding domain protein [Clostridium cellulolyticum
          H10]
 gi|220000594|gb|ACL77195.1| cold-shock DNA-binding domain protein [Clostridium cellulolyticum
          H10]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N +KG+GFI  +G    G+DVF+H SA+   G   L EG  V +D V+
Sbjct: 1  MEKGRVKWFNAEKGFGFIERDG----GNDVFVHFSAITMDGYKTLEEGSEVVFDVVE 53


>gi|254505942|ref|ZP_05118087.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus
          16]
 gi|323498518|ref|ZP_08103511.1| cold shock protein CspE [Vibrio sinaloensis DSM 21326]
 gi|219551165|gb|EED28145.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus
          16]
 gi|323316407|gb|EGA69425.1| cold shock protein CspE [Vibrio sinaloensis DSM 21326]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V +   Q     +
Sbjct: 7  GTVKWFNETKGFGFI----KQENGPDVFAHFSAITGDGFRTLAEGQKVEFVITQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AEN+K V
Sbjct: 63 --AENIKAV 69


>gi|166712680|ref|ZP_02243887.1| major cold shock protein [Xanthomonas oryzae pv. oryzicola
          BLS256]
          Length = 71

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI    S E+G+DVF+H  A+   G  +L EGQ V++  VQ
Sbjct: 9  GLVKWFNDAKGFGFI----SRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQ 58


>gi|322420677|ref|YP_004199900.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
          M18]
 gi|320127064|gb|ADW14624.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      E+GDDVF+H SA+   G  +L EG  VT++  +
Sbjct: 4  GTVKWFNDSKGFGFI----EQENGDDVFVHFSAITGDGFKSLAEGDSVTFEVAK 53


>gi|295838116|ref|ZP_06825049.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|302520033|ref|ZP_07272375.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
 gi|318062306|ref|ZP_07981027.1| cold shock protein [Streptomyces sp. SA3_actG]
 gi|318081844|ref|ZP_07989153.1| cold shock protein [Streptomyces sp. SA3_actF]
 gi|197700035|gb|EDY46968.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|302428928|gb|EFL00744.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQ 53


>gi|171777642|ref|ZP_02919307.1| hypothetical protein STRINF_00142 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171283170|gb|EDT48594.1| hypothetical protein STRINF_00142 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI    S ESG DVF H S + S G  +L +GQ V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFI----SQESGPDVFAHFSEIQSNGFKSLEDGQKVNFEVEQ 53


>gi|148266390|ref|YP_001233096.1| cold-shock DNA-binding domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146399890|gb|ABQ28523.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
          Rf4]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 5/63 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      ++GDDVF+H SA+   G  +L EG+ VT++ VQ    G 
Sbjct: 4  GTVKWFNDSKGFGFI----EQDNGDDVFVHFSAIMGDGFKSLAEGEAVTFE-VQKGPKGL 58

Query: 65 YSA 67
           +A
Sbjct: 59 QAA 61


>gi|23502382|ref|NP_698509.1| cold-shock family protein [Brucella suis 1330]
 gi|62290402|ref|YP_222195.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82700324|ref|YP_414898.1| cold shock DNA-binding domain-containing protein [Brucella
          melitensis biovar Abortus 2308]
 gi|161619460|ref|YP_001593347.1| hypothetical protein BCAN_A1551 [Brucella canis ATCC 23365]
 gi|163843768|ref|YP_001628172.1| hypothetical protein BSUIS_A1571 [Brucella suis ATCC 23445]
 gi|189024628|ref|YP_001935396.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
 gi|225852991|ref|YP_002733224.1| hypothetical protein BMEA_A1565 [Brucella melitensis ATCC 23457]
 gi|254689700|ref|ZP_05152954.1| cold-shock family protein [Brucella abortus bv. 6 str. 870]
 gi|254694190|ref|ZP_05156018.1| cold-shock family protein [Brucella abortus bv. 3 str. Tulya]
 gi|254697843|ref|ZP_05159671.1| cold-shock family protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254702232|ref|ZP_05164060.1| cold-shock family protein [Brucella suis bv. 5 str. 513]
 gi|254704767|ref|ZP_05166595.1| cold-shock family protein [Brucella suis bv. 3 str. 686]
 gi|254708180|ref|ZP_05170008.1| cold-shock family protein [Brucella pinnipedialis M163/99/10]
 gi|254710551|ref|ZP_05172362.1| cold-shock family protein [Brucella pinnipedialis B2/94]
 gi|254714734|ref|ZP_05176545.1| cold-shock family protein [Brucella ceti M644/93/1]
 gi|254717794|ref|ZP_05179605.1| cold-shock family protein [Brucella ceti M13/05/1]
 gi|254719549|ref|ZP_05181360.1| cold-shock family protein [Brucella sp. 83/13]
 gi|254730734|ref|ZP_05189312.1| cold-shock family protein [Brucella abortus bv. 4 str. 292]
 gi|256032045|ref|ZP_05445659.1| cold-shock family protein [Brucella pinnipedialis M292/94/1]
 gi|256045136|ref|ZP_05448036.1| cold-shock family protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061567|ref|ZP_05451709.1| cold-shock family protein [Brucella neotomae 5K33]
 gi|256114072|ref|ZP_05454842.1| cold-shock family protein [Brucella melitensis bv. 3 str. Ether]
 gi|256160241|ref|ZP_05457935.1| cold-shock family protein [Brucella ceti M490/95/1]
 gi|256255447|ref|ZP_05460983.1| cold-shock family protein [Brucella ceti B1/94]
 gi|256257951|ref|ZP_05463487.1| cold-shock family protein [Brucella abortus bv. 9 str. C68]
 gi|256263527|ref|ZP_05466059.1| cold-shock family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|256369930|ref|YP_003107441.1| cold-shock family protein [Brucella microti CCM 4915]
 gi|260169180|ref|ZP_05755991.1| cold-shock family protein [Brucella sp. F5/99]
 gi|260546939|ref|ZP_05822678.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus NCTC 8038]
 gi|260565265|ref|ZP_05835749.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. 16M]
 gi|260565989|ref|ZP_05836459.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 4 str. 40]
 gi|260755234|ref|ZP_05867582.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 6 str. 870]
 gi|260758454|ref|ZP_05870802.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 4 str. 292]
 gi|260762280|ref|ZP_05874623.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 2 str. 86/8/59]
 gi|260884248|ref|ZP_05895862.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 9 str. C68]
 gi|261214497|ref|ZP_05928778.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 3 str. Tulya]
 gi|261219643|ref|ZP_05933924.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M13/05/1]
 gi|261222653|ref|ZP_05936934.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          B1/94]
 gi|261315687|ref|ZP_05954884.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M163/99/10]
 gi|261318125|ref|ZP_05957322.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis B2/94]
 gi|261322531|ref|ZP_05961728.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M644/93/1]
 gi|261325575|ref|ZP_05964772.1| cold-shock DNA-binding domain-containing protein [Brucella
          neotomae 5K33]
 gi|261752805|ref|ZP_05996514.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 5 str. 513]
 gi|261755464|ref|ZP_05999173.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 3 str. 686]
 gi|261758694|ref|ZP_06002403.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          F5/99]
 gi|261885343|ref|ZP_06009382.1| cold-shock family protein [Campylobacter fetus subsp. venerealis
          str. Azul-94]
 gi|265984558|ref|ZP_06097293.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          83/13]
 gi|265989155|ref|ZP_06101712.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M292/94/1]
 gi|265991570|ref|ZP_06104127.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. Rev.1]
 gi|265995406|ref|ZP_06107963.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 3 str. Ether]
 gi|265998617|ref|ZP_06111174.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M490/95/1]
 gi|294852832|ref|ZP_06793505.1| major cold shock protein [Brucella sp. NVSL 07-0026]
 gi|306838489|ref|ZP_07471330.1| cold shock protein [Brucella sp. NF 2653]
 gi|306844515|ref|ZP_07477104.1| cold shock protein [Brucella sp. BO1]
 gi|23348366|gb|AAN30424.1| cold-shock family protein [Brucella suis 1330]
 gi|62196534|gb|AAX74834.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616425|emb|CAJ11488.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus
          2308]
 gi|161336271|gb|ABX62576.1| Hypothetical protein BCAN_A1551 [Brucella canis ATCC 23365]
 gi|163674491|gb|ABY38602.1| Hypothetical protein BSUIS_A1571 [Brucella suis ATCC 23445]
 gi|189020200|gb|ACD72922.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
 gi|225641356|gb|ACO01270.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|256000093|gb|ACU48492.1| cold-shock family protein [Brucella microti CCM 4915]
 gi|260095989|gb|EEW79866.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus NCTC 8038]
 gi|260151333|gb|EEW86427.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. 16M]
 gi|260155507|gb|EEW90587.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 4 str. 40]
 gi|260668772|gb|EEX55712.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 4 str. 292]
 gi|260672712|gb|EEX59533.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 2 str. 86/8/59]
 gi|260675342|gb|EEX62163.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 6 str. 870]
 gi|260873776|gb|EEX80845.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 9 str. C68]
 gi|260916104|gb|EEX82965.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 3 str. Tulya]
 gi|260921237|gb|EEX87890.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          B1/94]
 gi|260924732|gb|EEX91300.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M13/05/1]
 gi|261295221|gb|EEX98717.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M644/93/1]
 gi|261297348|gb|EEY00845.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis B2/94]
 gi|261301555|gb|EEY05052.1| cold-shock DNA-binding domain-containing protein [Brucella
          neotomae 5K33]
 gi|261304713|gb|EEY08210.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M163/99/10]
 gi|261738678|gb|EEY26674.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          F5/99]
 gi|261742558|gb|EEY30484.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 5 str. 513]
 gi|261745217|gb|EEY33143.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 3 str. 686]
 gi|262553241|gb|EEZ09075.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M490/95/1]
 gi|262766519|gb|EEZ12308.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 3 str. Ether]
 gi|263002354|gb|EEZ14929.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. Rev.1]
 gi|263093556|gb|EEZ17581.1| cold-shock family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264661352|gb|EEZ31613.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M292/94/1]
 gi|264663150|gb|EEZ33411.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          83/13]
 gi|294821421|gb|EFG38420.1| major cold shock protein [Brucella sp. NVSL 07-0026]
 gi|306275126|gb|EFM56882.1| cold shock protein [Brucella sp. BO1]
 gi|306406453|gb|EFM62691.1| cold shock protein [Brucella sp. NF 2653]
          Length = 71

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N +KG+GFI P+   + G D+F+H SAV ++GL  L + Q V+Y+  + D
Sbjct: 1  MAQTGQVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLPGLADNQKVSYE-TEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 RRGK 60


>gi|124267649|ref|YP_001021653.1| cold-shock DNA-binding protein family protein [Methylibium
          petroleiphilum PM1]
 gi|124260424|gb|ABM95418.1| cold-shock DNA-binding protein family [Methylibium petroleiphilum
          PM1]
          Length = 89

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G++KW+N  KG+GFI PEG    G+DVF H SA+   G   L +G  V+++ V
Sbjct: 4  GTVKWFNDAKGFGFIEPEG---GGEDVFAHFSAILMDGFRTLKQGARVSFELV 53


>gi|15804102|ref|NP_290141.1| major cold shock protein [Escherichia coli O157:H7 EDL933]
 gi|15833695|ref|NP_312468.1| major cold shock protein [Escherichia coli O157:H7 str. Sakai]
 gi|16131427|ref|NP_418012.1| RNA chaperone and anti-terminator, cold-inducible [Escherichia
          coli str. K-12 substr. MG1655]
 gi|16762659|ref|NP_458276.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|24114823|ref|NP_709333.1| major cold shock protein [Shigella flexneri 2a str. 301]
 gi|26250199|ref|NP_756239.1| major cold shock protein [Escherichia coli CFT073]
 gi|29144146|ref|NP_807488.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|30065165|ref|NP_839336.1| major cold shock protein [Shigella flexneri 2a str. 2457T]
 gi|56415543|ref|YP_152618.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62182151|ref|YP_218568.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|74314190|ref|YP_312609.1| major cold shock protein [Shigella sonnei Ss046]
 gi|82545921|ref|YP_409868.1| major cold shock protein [Shigella boydii Sb227]
 gi|82779380|ref|YP_405729.1| major cold shock protein [Shigella dysenteriae Sd197]
 gi|89110458|ref|AP_004238.1| major cold shock protein [Escherichia coli str. K-12 substr.
          W3110]
 gi|91213070|ref|YP_543056.1| major cold shock protein [Escherichia coli UTI89]
 gi|110643804|ref|YP_671534.1| major cold shock protein [Escherichia coli 536]
 gi|110807352|ref|YP_690872.1| major cold shock protein [Shigella flexneri 5 str. 8401]
 gi|152972426|ref|YP_001337572.1| major cold shock protein [Klebsiella pneumoniae subsp. pneumoniae
          MGH 78578]
 gi|157149172|ref|YP_001456492.1| major cold shock protein [Citrobacter koseri ATCC BAA-895]
 gi|157155319|ref|YP_001465032.1| major cold shock protein [Escherichia coli E24377A]
 gi|157163031|ref|YP_001460349.1| major cold shock protein [Escherichia coli HS]
 gi|161616716|ref|YP_001590682.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Paratyphi B str. SPB7]
 gi|168232491|ref|ZP_02657549.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|168235252|ref|ZP_02660310.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|170018215|ref|YP_001723169.1| major cold shock protein [Escherichia coli ATCC 8739]
 gi|170083064|ref|YP_001732384.1| major cold shock protein [Escherichia coli str. K-12 substr.
          DH10B]
 gi|170683736|ref|YP_001745842.1| major cold shock protein [Escherichia coli SMS-3-5]
 gi|170766842|ref|ZP_02901295.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
 gi|187730606|ref|YP_001882251.1| major cold shock protein [Shigella boydii CDC 3083-94]
 gi|187775668|ref|ZP_02797489.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|188024513|ref|ZP_02771920.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|188493329|ref|ZP_03000599.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|189010109|ref|ZP_02804714.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189401797|ref|ZP_02778383.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189402745|ref|ZP_02790978.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189403738|ref|ZP_02784655.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|189404722|ref|ZP_02810435.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC869]
 gi|189405473|ref|ZP_02822401.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC508]
 gi|191165334|ref|ZP_03027177.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|191170525|ref|ZP_03032078.1| cold shock DNA-binding protein [Escherichia coli F11]
 gi|193061815|ref|ZP_03042912.1| cold shock DNA-binding protein [Escherichia coli E22]
 gi|193068536|ref|ZP_03049498.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194427483|ref|ZP_03060032.1| cold shock DNA-binding protein [Escherichia coli B171]
 gi|194431091|ref|ZP_03063384.1| cold shock DNA-binding protein [Shigella dysenteriae 1012]
 gi|194435705|ref|ZP_03067808.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|194443289|ref|YP_002042899.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194450219|ref|YP_002047680.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194469960|ref|ZP_03075944.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194736943|ref|YP_002116583.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195935087|ref|ZP_03080469.1| major cold shock protein [Escherichia coli O157:H7 str. EC4024]
 gi|197249244|ref|YP_002148580.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197262466|ref|ZP_03162540.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197364470|ref|YP_002144107.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|198241852|ref|YP_002217610.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|200386615|ref|ZP_03213227.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204928494|ref|ZP_03219693.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205354743|ref|YP_002228544.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205356895|ref|ZP_02342874.2| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205357597|ref|ZP_02571979.2| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205359051|ref|ZP_02666750.2| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|205359542|ref|ZP_02830526.2| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205360333|ref|ZP_02682580.2| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|206575782|ref|YP_002236070.1| cold shock-like protein CspA [Klebsiella pneumoniae 342]
 gi|207858886|ref|YP_002245537.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|208807153|ref|ZP_03249490.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208812180|ref|ZP_03253509.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208821921|ref|ZP_03262241.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209400365|ref|YP_002273042.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4115]
 gi|209921021|ref|YP_002295105.1| major cold shock protein [Escherichia coli SE11]
 gi|213022040|ref|ZP_03336487.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
 gi|213163585|ref|ZP_03349295.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
 gi|213422161|ref|ZP_03355227.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
 gi|213428098|ref|ZP_03360848.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E02-1180]
 gi|213582746|ref|ZP_03364572.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
 gi|213607995|ref|ZP_03368821.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
 gi|213650792|ref|ZP_03380845.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
 gi|213852850|ref|ZP_03382382.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
 gi|215488841|ref|YP_002331272.1| major cold shock protein [Escherichia coli O127:H6 str. E2348/69]
 gi|217326515|ref|ZP_03442599.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          TW14588]
 gi|218550842|ref|YP_002384633.1| major cold shock protein [Escherichia fergusonii ATCC 35469]
 gi|218556117|ref|YP_002389030.1| major cold shock protein [Escherichia coli IAI1]
 gi|218560633|ref|YP_002393546.1| major cold shock protein [Escherichia coli S88]
 gi|218691847|ref|YP_002400059.1| major cold shock protein [Escherichia coli ED1a]
 gi|218697273|ref|YP_002404940.1| major cold shock protein [Escherichia coli 55989]
 gi|218702321|ref|YP_002409950.1| major cold shock protein [Escherichia coli IAI39]
 gi|218707191|ref|YP_002414710.1| major cold shock protein [Escherichia coli UMN026]
 gi|224585449|ref|YP_002639248.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|227883723|ref|ZP_04001528.1| major cold shock protein [Escherichia coli 83972]
 gi|237703327|ref|ZP_04533808.1| major cold shock protein [Escherichia sp. 3_2_53FAA]
 gi|237728871|ref|ZP_04559352.1| major cold shock protein [Citrobacter sp. 30_2]
 gi|238897019|ref|YP_002921765.1| major cold shock protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238902644|ref|YP_002928440.1| major cold shock protein [Escherichia coli BW2952]
 gi|238910323|ref|ZP_04654160.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Tennessee str. CDC07-0191]
 gi|253771610|ref|YP_003034441.1| major cold shock protein [Escherichia coli 'BL21-Gold(DE3)pLysS
          AG']
 gi|254038740|ref|ZP_04872796.1| major cold shock protein [Escherichia sp. 1_1_43]
 gi|254163479|ref|YP_003046587.1| major cold shock protein [Escherichia coli B str. REL606]
 gi|254795513|ref|YP_003080350.1| major cold shock protein [Escherichia coli O157:H7 str. TW14359]
 gi|256020905|ref|ZP_05434770.1| major cold shock protein [Shigella sp. D9]
 gi|256025717|ref|ZP_05439582.1| major cold shock protein [Escherichia sp. 4_1_40B]
 gi|260846729|ref|YP_003224507.1| major cold shock protein CspA [Escherichia coli O103:H2 str.
          12009]
 gi|260858048|ref|YP_003231939.1| major cold shock protein CspA [Escherichia coli O26:H11 str.
          11368]
 gi|260870287|ref|YP_003236689.1| major cold shock protein CspA [Escherichia coli O111:H- str.
          11128]
 gi|261224875|ref|ZP_05939156.1| major cold shock protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254226|ref|ZP_05946759.1| major cold shock protein CspA [Escherichia coli O157:H7 str.
          FRIK966]
 gi|283835935|ref|ZP_06355676.1| putative cold shock protein [Citrobacter youngae ATCC 29220]
 gi|288933068|ref|YP_003437127.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|289805377|ref|ZP_06536006.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
 gi|289828312|ref|ZP_06546237.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-3139]
 gi|290511862|ref|ZP_06551230.1| cold shock protein cspA [Klebsiella sp. 1_1_55]
 gi|291284933|ref|YP_003501751.1| Cold shock protein cspA [Escherichia coli O55:H7 str. CB9615]
 gi|293407179|ref|ZP_06651103.1| cold shock protein CspB [Escherichia coli FVEC1412]
 gi|293412991|ref|ZP_06655659.1| cold shock protein cspA [Escherichia coli B354]
 gi|293417005|ref|ZP_06659642.1| cold shock protein cspA [Escherichia coli B185]
 gi|293453866|ref|ZP_06664285.1| cold shock protein cspA [Escherichia coli B088]
 gi|298382928|ref|ZP_06992523.1| cold shock protein CspB [Escherichia coli FVEC1302]
 gi|300815217|ref|ZP_07095442.1| transcriptional repressor activity CueR [Escherichia coli MS
          107-1]
 gi|300822041|ref|ZP_07102184.1| transcriptional repressor activity CueR [Escherichia coli MS
          119-7]
 gi|300898732|ref|ZP_07117043.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300902747|ref|ZP_07120703.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300920437|ref|ZP_07136871.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300925632|ref|ZP_07141498.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|300928228|ref|ZP_07143767.1| transcriptional repressor activity CueR [Escherichia coli MS
          187-1]
 gi|300937162|ref|ZP_07152015.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|300950904|ref|ZP_07164783.1| transcriptional repressor activity CueR [Escherichia coli MS
          116-1]
 gi|300955049|ref|ZP_07167457.1| transcriptional repressor activity CueR [Escherichia coli MS
          175-1]
 gi|300971382|ref|ZP_07171451.1| transcriptional repressor activity CueR [Escherichia coli MS
          45-1]
 gi|300976956|ref|ZP_07173691.1| transcriptional repressor activity CueR [Escherichia coli MS
          200-1]
 gi|301026237|ref|ZP_07189700.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|301028176|ref|ZP_07191447.1| transcriptional repressor activity CueR [Escherichia coli MS
          196-1]
 gi|301047090|ref|ZP_07194190.1| transcriptional repressor activity CueR [Escherichia coli MS
          185-1]
 gi|301304609|ref|ZP_07210718.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|301646011|ref|ZP_07245917.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|306816090|ref|ZP_07450228.1| major cold shock protein [Escherichia coli NC101]
 gi|307140246|ref|ZP_07499602.1| major cold shock protein [Escherichia coli H736]
 gi|307314309|ref|ZP_07593916.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|309787759|ref|ZP_07682370.1| cold shock-like protein cspG [Shigella dysenteriae 1617]
 gi|309796198|ref|ZP_07690609.1| transcriptional repressor activity CueR [Escherichia coli MS
          145-7]
 gi|312968101|ref|ZP_07782312.1| cold shock-like protein cspG [Escherichia coli 2362-75]
 gi|312972169|ref|ZP_07786343.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|329999877|ref|ZP_08303546.1| cold shock protein [Klebsiella sp. MS 92-3]
 gi|331644267|ref|ZP_08345396.1| conserved domain protein [Escherichia coli H736]
 gi|331649387|ref|ZP_08350473.1| conserved domain protein [Escherichia coli M605]
 gi|331655193|ref|ZP_08356192.1| conserved domain protein [Escherichia coli M718]
 gi|331659872|ref|ZP_08360810.1| conserved domain protein [Escherichia coli TA206]
 gi|331665179|ref|ZP_08366080.1| conserved domain protein [Escherichia coli TA143]
 gi|331670390|ref|ZP_08371229.1| conserved domain protein [Escherichia coli TA271]
 gi|331675046|ref|ZP_08375803.1| conserved domain protein [Escherichia coli TA280]
 gi|331679637|ref|ZP_08380307.1| conserved domain protein [Escherichia coli H591]
 gi|331685219|ref|ZP_08385805.1| conserved domain protein [Escherichia coli H299]
 gi|332282124|ref|ZP_08394537.1| major cold shock protein [Shigella sp. D9]
 gi|76364240|sp|P0A9X9|CSPA_ECOLI RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|76364241|sp|P0A9Y5|CSPA_SALEN RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|76364242|sp|P0A9Y2|CSPA_SALTY RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|76364243|sp|P0A9Y4|CSPA_SHIFL RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|85687548|sp|P0A9Y1|CSPA_ECO57 RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|85687549|sp|P0A9Y0|CSPA_ECOL6 RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|85687550|sp|P0A9Y3|CSPA_SALTI RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|25296126|pir||AG0981 cold shock protein [imported] - Salmonella enterica subsp.
          enterica serovar Typhi (strain CT18)
 gi|306991504|pdb|2L15|A Chain A, Solution Structure Of Cold Shock Protein Cspa Using
          Combined Nmr And Cs-Rosetta Method
 gi|12518291|gb|AAG58705.1|AE005582_8 cold shock protein 7.4, transcriptional activator of hns
          [Escherichia coli O157:H7 str. EDL933]
 gi|26110628|gb|AAN82813.1|AE016768_231 Cold shock protein cspA [Escherichia coli CFT073]
 gi|145633|gb|AAA23617.1| cold shock protein (cspA) [Escherichia coli]
 gi|466694|gb|AAB18533.1| cold regulated [Escherichia coli str. K-12 substr. MG1655]
 gi|1789979|gb|AAC76580.1| RNA chaperone and anti-terminator, cold-inducible [Escherichia
          coli str. K-12 substr. MG1655]
 gi|2353338|gb|AAB69447.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Enteritidis]
 gi|2970683|gb|AAC06036.1| cold shock protein A [Salmonella enterica subsp. enterica serovar
          Typhimurium]
 gi|13363915|dbj|BAB37864.1| cold shock protein 7.4 [Escherichia coli O157:H7 str. Sakai]
 gi|16422214|gb|AAL22509.1| major cold shock protein 7.4 [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|16504965|emb|CAD07979.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi]
 gi|24054054|gb|AAN45040.1| cold shock protein 7.4, transcriptional activator of hns
          [Shigella flexneri 2a str. 301]
 gi|29139783|gb|AAO71348.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
 gi|30043427|gb|AAP19147.1| cold shock protein 7.4, transcriptional activator of hns
          [Shigella flexneri 2a str. 2457T]
 gi|56129800|gb|AAV79306.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|62129784|gb|AAX67487.1| Cold shock protein cspA (CSP-A) [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|73857667|gb|AAZ90374.1| cold shock protein 7.4, transcriptional activator of hns
          [Shigella sonnei Ss046]
 gi|81243528|gb|ABB64238.1| cold shock protein 7.4 [Shigella dysenteriae Sd197]
 gi|81247332|gb|ABB68040.1| cold shock protein 7.4 [Shigella boydii Sb227]
 gi|85676489|dbj|BAE77739.1| major cold shock protein [Escherichia coli str. K12 substr.
          W3110]
 gi|91074644|gb|ABE09525.1| cold shock protein 7.4, transcriptional activator of hns
          [Escherichia coli UTI89]
 gi|110345396|gb|ABG71633.1| cold shock protein CspA [Escherichia coli 536]
 gi|110616900|gb|ABF05567.1| Cold shock protein cspA [Shigella flexneri 5 str. 8401]
 gi|150957275|gb|ABR79305.1| cold shock protein 7.4, transcriptional activator of hns
          [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|157068711|gb|ABV07966.1| cold shock DNA-binding protein [Escherichia coli HS]
 gi|157077349|gb|ABV17057.1| cold shock DNA-binding protein [Escherichia coli E24377A]
 gi|157086377|gb|ABV16055.1| hypothetical protein CKO_05012 [Citrobacter koseri ATCC BAA-895]
 gi|161366080|gb|ABX69848.1| hypothetical protein SPAB_04535 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|169753143|gb|ACA75842.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|169890899|gb|ACB04606.1| major cold shock protein [Escherichia coli str. K-12 substr.
          DH10B]
 gi|170124280|gb|EDS93211.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
 gi|170521454|gb|ACB19632.1| cold shock DNA-binding protein [Escherichia coli SMS-3-5]
 gi|187427598|gb|ACD06872.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94]
 gi|187771551|gb|EDU35395.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|188018410|gb|EDU56532.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|188488528|gb|EDU63631.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|189002424|gb|EDU71410.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189358854|gb|EDU77273.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189364591|gb|EDU83010.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189369849|gb|EDU88265.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|189374634|gb|EDU93050.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC869]
 gi|189379895|gb|EDU98311.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC508]
 gi|190904736|gb|EDV64442.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|190909333|gb|EDV68919.1| cold shock DNA-binding protein [Escherichia coli F11]
 gi|192932605|gb|EDV85202.1| cold shock DNA-binding protein [Escherichia coli E22]
 gi|192958187|gb|EDV88628.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194401952|gb|ACF62174.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194408523|gb|ACF68742.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194414523|gb|EDX30796.1| cold shock DNA-binding protein [Escherichia coli B171]
 gi|194420546|gb|EDX36622.1| cold shock DNA-binding protein [Shigella dysenteriae 1012]
 gi|194425248|gb|EDX41232.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|194456324|gb|EDX45163.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194712445|gb|ACF91666.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|197095947|emb|CAR61529.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|197212947|gb|ACH50344.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197240721|gb|EDY23341.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197291255|gb|EDY30607.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|197936368|gb|ACH73701.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|199603713|gb|EDZ02258.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204321927|gb|EDZ07125.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205274524|emb|CAR39563.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|205325852|gb|EDZ13691.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205330662|gb|EDZ17426.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333305|gb|EDZ20069.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|205338837|gb|EDZ25601.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|205344312|gb|EDZ31076.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205350328|gb|EDZ36959.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|206564840|gb|ACI06616.1| cold shock-like protein CspA [Klebsiella pneumoniae 342]
 gi|206710689|emb|CAR35049.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|208726954|gb|EDZ76555.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208733457|gb|EDZ82144.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208742044|gb|EDZ89726.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209161765|gb|ACI39198.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4115]
 gi|209755208|gb|ACI75916.1| cold shock protein 7.4 [Escherichia coli]
 gi|209755210|gb|ACI75917.1| cold shock protein 7.4 [Escherichia coli]
 gi|209755212|gb|ACI75918.1| cold shock protein 7.4 [Escherichia coli]
 gi|209755214|gb|ACI75919.1| cold shock protein 7.4 [Escherichia coli]
 gi|209755216|gb|ACI75920.1| cold shock protein 7.4 [Escherichia coli]
 gi|209914280|dbj|BAG79354.1| cold shock protein [Escherichia coli SE11]
 gi|215266913|emb|CAS11356.1| major cold shock protein [Escherichia coli O127:H6 str. E2348/69]
 gi|217322736|gb|EEC31160.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          TW14588]
 gi|218354005|emb|CAV00495.1| major cold shock protein [Escherichia coli 55989]
 gi|218358383|emb|CAQ91030.1| major cold shock protein [Escherichia fergusonii ATCC 35469]
 gi|218362885|emb|CAR00519.1| major cold shock protein [Escherichia coli IAI1]
 gi|218367402|emb|CAR05184.1| major cold shock protein [Escherichia coli S88]
 gi|218372307|emb|CAR20172.1| major cold shock protein [Escherichia coli IAI39]
 gi|218429411|emb|CAR10372.2| major cold shock protein [Escherichia coli ED1a]
 gi|218434288|emb|CAR15210.1| major cold shock protein [Escherichia coli UMN026]
 gi|222035271|emb|CAP78016.1| Cold shock protein cspA [Escherichia coli LF82]
 gi|224469977|gb|ACN47807.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|226839246|gb|EEH71269.1| major cold shock protein [Escherichia sp. 1_1_43]
 gi|226902591|gb|EEH88850.1| major cold shock protein [Escherichia sp. 3_2_53FAA]
 gi|226909493|gb|EEH95411.1| major cold shock protein [Citrobacter sp. 30_2]
 gi|227839303|gb|EEJ49769.1| major cold shock protein [Escherichia coli 83972]
 gi|238549347|dbj|BAH65698.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
 gi|238861704|gb|ACR63702.1| major cold shock protein [Escherichia coli BW2952]
 gi|242379073|emb|CAQ33874.1| CspA transcriptional activator [Escherichia coli BL21(DE3)]
 gi|253322654|gb|ACT27256.1| cold-shock DNA-binding domain protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253975380|gb|ACT41051.1| major cold shock protein [Escherichia coli B str. REL606]
 gi|253979536|gb|ACT45206.1| major cold shock protein [Escherichia coli BL21(DE3)]
 gi|254594913|gb|ACT74274.1| major cold shock protein [Escherichia coli O157:H7 str. TW14359]
 gi|257756697|dbj|BAI28199.1| major cold shock protein CspA [Escherichia coli O26:H11 str.
          11368]
 gi|257761876|dbj|BAI33373.1| major cold shock protein CspA [Escherichia coli O103:H2 str.
          12009]
 gi|257766643|dbj|BAI38138.1| major cold shock protein CspA [Escherichia coli O111:H- str.
          11128]
 gi|260447428|gb|ACX37850.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|261248799|emb|CBG26652.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. D23580]
 gi|267995899|gb|ACY90784.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|281180601|dbj|BAI56931.1| cold shock protein [Escherichia coli SE15]
 gi|281602915|gb|ADA75899.1| Cold-shock DNA-binding protein family [Shigella flexneri 2002017]
 gi|284923590|emb|CBG36686.1| cold shock protein [Escherichia coli 042]
 gi|288887797|gb|ADC56115.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|289775652|gb|EFD83652.1| cold shock protein cspA [Klebsiella sp. 1_1_55]
 gi|290764806|gb|ADD58767.1| Cold shock protein cspA [Escherichia coli O55:H7 str. CB9615]
 gi|291068112|gb|EFE06221.1| putative cold shock protein [Citrobacter youngae ATCC 29220]
 gi|291321992|gb|EFE61423.1| cold shock protein cspA [Escherichia coli B088]
 gi|291425990|gb|EFE99024.1| cold shock protein CspB [Escherichia coli FVEC1412]
 gi|291431581|gb|EFF04566.1| cold shock protein cspA [Escherichia coli B185]
 gi|291468638|gb|EFF11131.1| cold shock protein cspA [Escherichia coli B354]
 gi|294490956|gb|ADE89712.1| cold shock DNA-binding protein [Escherichia coli IHE3034]
 gi|298276764|gb|EFI18282.1| cold shock protein CspB [Escherichia coli FVEC1302]
 gi|299878753|gb|EFI86964.1| transcriptional repressor activity CueR [Escherichia coli MS
          196-1]
 gi|300300977|gb|EFJ57362.1| transcriptional repressor activity CueR [Escherichia coli MS
          185-1]
 gi|300308426|gb|EFJ62946.1| transcriptional repressor activity CueR [Escherichia coli MS
          200-1]
 gi|300318019|gb|EFJ67803.1| transcriptional repressor activity CueR [Escherichia coli MS
          175-1]
 gi|300357611|gb|EFJ73481.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300395621|gb|EFJ79159.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|300405208|gb|EFJ88746.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300411306|gb|EFJ94844.1| transcriptional repressor activity CueR [Escherichia coli MS
          45-1]
 gi|300412570|gb|EFJ95880.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300418272|gb|EFK01583.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|300449807|gb|EFK13427.1| transcriptional repressor activity CueR [Escherichia coli MS
          116-1]
 gi|300457748|gb|EFK21241.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|300463773|gb|EFK27266.1| transcriptional repressor activity CueR [Escherichia coli MS
          187-1]
 gi|300525404|gb|EFK46473.1| transcriptional repressor activity CueR [Escherichia coli MS
          119-7]
 gi|300532109|gb|EFK53171.1| transcriptional repressor activity CueR [Escherichia coli MS
          107-1]
 gi|300840087|gb|EFK67847.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|301075763|gb|EFK90569.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|305850486|gb|EFM50943.1| major cold shock protein [Escherichia coli NC101]
 gi|306906024|gb|EFN36544.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|307555662|gb|ADN48437.1| cold shock protein CspA [Escherichia coli ABU 83972]
 gi|307628638|gb|ADN72942.1| major cold shock protein [Escherichia coli UM146]
 gi|308120259|gb|EFO57521.1| transcriptional repressor activity CueR [Escherichia coli MS
          145-7]
 gi|308924509|gb|EFP70005.1| cold shock-like protein cspG [Shigella dysenteriae 1617]
 gi|310334546|gb|EFQ00751.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|312287360|gb|EFR15269.1| cold shock-like protein cspG [Escherichia coli 2362-75]
 gi|312914675|dbj|BAJ38649.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. T000240]
 gi|312948122|gb|ADR28949.1| major cold shock protein [Escherichia coli O83:H1 str. NRG 857C]
 gi|313647586|gb|EFS12036.1| cold shock-like protein cspG [Shigella flexneri 2a str. 2457T]
 gi|315062841|gb|ADT77168.1| major cold shock protein [Escherichia coli W]
 gi|315138132|dbj|BAJ45291.1| cold shock protein cspA [Escherichia coli DH1]
 gi|315254086|gb|EFU34054.1| transcriptional repressor activity CueR [Escherichia coli MS
          85-1]
 gi|315285298|gb|EFU44743.1| transcriptional repressor activity CueR [Escherichia coli MS
          110-3]
 gi|315294135|gb|EFU53487.1| transcriptional repressor activity CueR [Escherichia coli MS
          153-1]
 gi|315300090|gb|EFU59328.1| transcriptional repressor activity CueR [Escherichia coli MS
          16-3]
 gi|315618408|gb|EFU98995.1| cold shock-like protein cspG [Escherichia coli 3431]
 gi|320088070|emb|CBY97832.1| Cold shock-like protein cspG CPS-G [Salmonella enterica subsp.
          enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|320177195|gb|EFW52205.1| Cold shock protein CspA [Shigella dysenteriae CDC 74-1112]
 gi|320182073|gb|EFW56978.1| Cold shock protein CspA [Shigella boydii ATCC 9905]
 gi|320187079|gb|EFW61787.1| Cold shock protein CspA [Shigella flexneri CDC 796-83]
 gi|320191387|gb|EFW66037.1| Cold shock protein CspA [Escherichia coli O157:H7 str. EC1212]
 gi|320193931|gb|EFW68564.1| Cold shock protein CspA [Escherichia coli WV_060327]
 gi|320201422|gb|EFW76003.1| Cold shock protein CspA [Escherichia coli EC4100B]
 gi|320639877|gb|EFX09471.1| RNA chaperone/anti-terminator [Escherichia coli O157:H7 str.
          G5101]
 gi|320645040|gb|EFX14064.1| RNA chaperone/anti-terminator [Escherichia coli O157:H- str.
          493-89]
 gi|320650307|gb|EFX18790.1| RNA chaperone/anti-terminator [Escherichia coli O157:H- str. H
          2687]
 gi|320655882|gb|EFX23805.1| RNA chaperone/anti-terminator [Escherichia coli O55:H7 str.
          3256-97 TW 07815]
 gi|320661662|gb|EFX29077.1| RNA chaperone/anti-terminator [Escherichia coli O55:H7 str. USDA
          5905]
 gi|320666686|gb|EFX33669.1| RNA chaperone/anti-terminator [Escherichia coli O157:H7 str.
          LSU-61]
 gi|321226705|gb|EFX51755.1| Cold shock protein CspA [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322613962|gb|EFY10898.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315996572]
 gi|322620331|gb|EFY17199.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-1]
 gi|322625336|gb|EFY22163.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-3]
 gi|322629997|gb|EFY26770.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-4]
 gi|322634187|gb|EFY30922.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-1]
 gi|322635912|gb|EFY32621.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-2]
 gi|322643170|gb|EFY39744.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 531954]
 gi|322644609|gb|EFY41145.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. NC_MB110209-0054]
 gi|322650851|gb|EFY47243.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. OH_2009072675]
 gi|322652985|gb|EFY49320.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. CASC_09SCPH15965]
 gi|322659948|gb|EFY56188.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 19N]
 gi|322663281|gb|EFY59485.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 81038-01]
 gi|322668767|gb|EFY64920.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MD_MDA09249507]
 gi|322674430|gb|EFY70523.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 414877]
 gi|322678362|gb|EFY74423.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 366867]
 gi|322680868|gb|EFY76902.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 413180]
 gi|322687196|gb|EFY83169.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 446600]
 gi|322716639|gb|EFZ08210.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
 gi|323132010|gb|ADX19440.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
 gi|323153885|gb|EFZ40119.1| cold shock-like protein cspG [Escherichia coli EPECa14]
 gi|323166951|gb|EFZ52690.1| cold shock-like protein cspG [Shigella sonnei 53G]
 gi|323174215|gb|EFZ59843.1| cold shock-like protein cspG [Escherichia coli LT-68]
 gi|323182712|gb|EFZ68114.1| cold shock-like protein cspG [Escherichia coli 1357]
 gi|323189283|gb|EFZ74566.1| cold shock-like protein cspG [Escherichia coli RN587/1]
 gi|323192155|gb|EFZ77388.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609458-1]
 gi|323200659|gb|EFZ85733.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556150-1]
 gi|323201369|gb|EFZ86435.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609460]
 gi|323206769|gb|EFZ91723.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 507440-20]
 gi|323211801|gb|EFZ96633.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556152]
 gi|323216160|gb|EGA00888.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB101509-0077]
 gi|323220383|gb|EGA04837.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB102109-0047]
 gi|323226240|gb|EGA10455.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
 gi|323228360|gb|EGA12491.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB111609-0052]
 gi|323234181|gb|EGA18269.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009083312]
 gi|323237166|gb|EGA21233.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009085258]
 gi|323244685|gb|EGA28689.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315731156]
 gi|323249166|gb|EGA33084.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323250715|gb|EGA34595.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323257590|gb|EGA41277.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323262299|gb|EGA45860.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008284]
 gi|323266146|gb|EGA49637.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323268781|gb|EGA52239.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
 gi|323376568|gb|ADX48836.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323934742|gb|EGB31129.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1520]
 gi|323939545|gb|EGB35753.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323944546|gb|EGB40617.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323949800|gb|EGB45684.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H252]
 gi|323954899|gb|EGB50679.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H263]
 gi|323959439|gb|EGB55098.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H489]
 gi|323966026|gb|EGB61467.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli M863]
 gi|323971361|gb|EGB66602.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|323975031|gb|EGB70140.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TW10509]
 gi|324007334|gb|EGB76553.1| transcriptional repressor activity CueR [Escherichia coli MS
          57-2]
 gi|324014208|gb|EGB83427.1| transcriptional repressor activity CueR [Escherichia coli MS
          60-1]
 gi|324021129|gb|EGB90348.1| transcriptional repressor activity CueR [Escherichia coli MS
          117-3]
 gi|324111895|gb|EGC05875.1| cold-shock DNA-binding domain-containing protein [Escherichia
          fergusonii B253]
 gi|324116564|gb|EGC10481.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1167]
 gi|325499116|gb|EGC96975.1| major cold shock protein [Escherichia fergusonii ECD227]
 gi|326337439|gb|EGD61274.1| Cold shock protein CspA [Escherichia coli O157:H7 str. 1044]
 gi|326339964|gb|EGD63771.1| Cold shock protein CspA [Escherichia coli O157:H7 str. 1125]
 gi|326625395|gb|EGE31740.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Dublin str. 3246]
 gi|326629882|gb|EGE36225.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
 gi|327251207|gb|EGE62900.1| cold shock-like protein cspG [Escherichia coli STEC_7v]
 gi|328538186|gb|EGF64339.1| cold shock protein [Klebsiella sp. MS 92-3]
 gi|330909619|gb|EGH38133.1| cold shock protein CspA [Escherichia coli AA86]
 gi|331036561|gb|EGI08787.1| conserved domain protein [Escherichia coli H736]
 gi|331041885|gb|EGI14029.1| conserved domain protein [Escherichia coli M605]
 gi|331047208|gb|EGI19286.1| conserved domain protein [Escherichia coli M718]
 gi|331053087|gb|EGI25120.1| conserved domain protein [Escherichia coli TA206]
 gi|331057689|gb|EGI29675.1| conserved domain protein [Escherichia coli TA143]
 gi|331062452|gb|EGI34372.1| conserved domain protein [Escherichia coli TA271]
 gi|331067955|gb|EGI39353.1| conserved domain protein [Escherichia coli TA280]
 gi|331072809|gb|EGI44134.1| conserved domain protein [Escherichia coli H591]
 gi|331077590|gb|EGI48802.1| conserved domain protein [Escherichia coli H299]
 gi|332085082|gb|EGI90262.1| cold shock-like protein cspG [Shigella boydii 5216-82]
 gi|332085822|gb|EGI90986.1| cold shock-like protein cspG [Shigella dysenteriae 155-74]
 gi|332089367|gb|EGI94471.1| cold shock-like protein cspG [Shigella boydii 3594-74]
 gi|332104476|gb|EGJ07822.1| major cold shock protein [Shigella sp. D9]
 gi|332345523|gb|AEE58857.1| cold shock-like protein CspG [Escherichia coli UMNK88]
 gi|332750008|gb|EGJ80420.1| cold shock-like protein cspG [Shigella flexneri K-671]
 gi|332750165|gb|EGJ80576.1| cold shock-like protein cspG [Shigella flexneri 4343-70]
 gi|332751185|gb|EGJ81588.1| cold shock-like protein cspG [Shigella flexneri 2747-71]
 gi|332763435|gb|EGJ93674.1| cspA transcriptional activator [Shigella flexneri 2930-71]
 gi|332990500|gb|AEF09483.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
 gi|332996874|gb|EGK16493.1| cold shock-like protein cspG [Shigella flexneri K-272]
 gi|332997304|gb|EGK16920.1| cold shock-like protein cspG [Shigella flexneri K-218]
 gi|333012564|gb|EGK31945.1| cold shock-like protein cspG [Shigella flexneri K-304]
 gi|333013441|gb|EGK32813.1| cold shock-like protein cspG [Shigella flexneri K-227]
          Length = 70

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ + G  +L EGQ V++
Sbjct: 7  GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 53


>gi|237738393|ref|ZP_04568874.1| cold-shock DNA-binding domain-containing protein [Fusobacterium
          mortiferum ATCC 9817]
 gi|229420273|gb|EEO35320.1| cold-shock DNA-binding domain-containing protein [Fusobacterium
          mortiferum ATCC 9817]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N DKG+GFI    S E G+D F+H S + + G  +L EGQ V+++  +
Sbjct: 3  KGTVKWFNKDKGFGFI----SGEDGNDYFVHYSNINAKGFRSLEEGQAVSFEVTE 53


>gi|231915|sp|Q01761|CSP7_STRCL RecName: Full=Cold shock-like protein 7.0
 gi|46789|emb|CAA48316.1| 7 kDa cold shock like protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L E Q+V +D    +
Sbjct: 4  GTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINATGFRSLEENQVVNFDVTHGE 56


>gi|302800247|ref|XP_002981881.1| hypothetical protein SELMODRAFT_154869 [Selaginella
          moellendorffii]
 gi|300150323|gb|EFJ16974.1| hypothetical protein SELMODRAFT_154869 [Selaginella
          moellendorffii]
          Length = 182

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KG+GFITP+  +E   ++F+H+SA+ + G  +L EG++V +   Q +
Sbjct: 11 GKVKWFNVTKGFGFITPDDGSE---ELFVHQSAIFAEGFRSLREGEIVEFSVEQGE 63


>gi|70727397|ref|YP_254313.1| cold-shock protein C [Staphylococcus haemolyticus JCSC1435]
 gi|68448123|dbj|BAE05707.1| cold-shock protein C [Staphylococcus haemolyticus JCSC1435]
          Length = 67

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N +KG+GFI      E G DVF+H S +A  G   L EGQ V +D  +
Sbjct: 1  MNNGTVKWFNAEKGFGFI----EREDGSDVFVHFSGIAGEGYKTLEEGQKVDFDITE 53


>gi|255640679|gb|ACU20624.1| unknown [Glycine max]
          Length = 170

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  KG+GFITP+  T   DD+F+H +++ S G  +L+EGQ V +
Sbjct: 9  GMVKWFNSQKGFGFITPQDGT---DDLFVHFTSIRSDGYRSLSEGQSVEF 55


>gi|212710131|ref|ZP_03318259.1| hypothetical protein PROVALCAL_01185 [Providencia alcalifaciens
          DSM 30120]
 gi|212687338|gb|EEB46866.1| hypothetical protein PROVALCAL_01185 [Providencia alcalifaciens
          DSM 30120]
          Length = 81

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI+P    +   DVF+H SA+ S     L EGQ V++  V+N A G 
Sbjct: 18 GLVKWFNESKGFGFISP---ADGSKDVFVHFSAIQSDSFKTLNEGQKVSFS-VENGAKGP 73

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 74 AAANVVAL 81


>gi|85858086|ref|YP_460288.1| cold shock protein [Syntrophus aciditrophicus SB]
 gi|85721177|gb|ABC76120.1| cold shock protein [Syntrophus aciditrophicus SB]
          Length = 90

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      + G DVF+H SA+ S+G   L EGQ V+++ VQ    G 
Sbjct: 28 GKVKWFNEQKGFGFI----EKDEGGDVFVHYSAIQSSGFKTLYEGQRVSFE-VQTGQKGP 82

Query: 65 YSAENLKLV 73
           +A N+K +
Sbjct: 83 -AAVNVKPI 90


>gi|58581133|ref|YP_200149.1| major cold shock protein [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84623058|ref|YP_450430.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|58425727|gb|AAW74764.1| major cold shock protein [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84366998|dbj|BAE68156.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF
          311018]
          Length = 71

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI    S E+G+DVF+H  A+   G  +L EGQ V++  VQ
Sbjct: 9  GLVKWFNDAKGFGFI----SRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQ 58


>gi|118581708|ref|YP_902958.1| cold-shock DNA-binding domain-containing protein [Pelobacter
          propionicus DSM 2379]
 gi|118504418|gb|ABL00901.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM
          2379]
          Length = 66

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+      E+G+DVF+H SA++  G  +L EG  VT++ V+
Sbjct: 4  GTVKWFNDSKGFGFL----EQENGEDVFVHFSAISGEGFKSLAEGDSVTFELVK 53


>gi|145297910|ref|YP_001140751.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida
          A449]
 gi|142850682|gb|ABO89003.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida
          A449]
          Length = 69

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI        G DVF+H S++ S G   L EGQ V +   Q   
Sbjct: 4  IRTGQVKWFNETKGFGFI----EQSQGPDVFVHFSSIQSTGFKTLAEGQKVQFTVTQGQK 59

Query: 62 NGKYSAENLKLV 73
            +  AEN+ L+
Sbjct: 60 GPQ--AENVTLL 69


>gi|163751971|ref|ZP_02159182.1| cold-shock DNA-binding domain family protein [Shewanella benthica
          KT99]
 gi|161328129|gb|EDP99296.1| cold-shock DNA-binding domain family protein [Shewanella benthica
          KT99]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58
          +G++KW+N DKG+GFITPE  ++   D+F+H S + + G F  L +GQ V ++  Q
Sbjct: 3  KGTVKWFNADKGFGFITPEDGSK---DLFVHHSEIQAGGGFATLNDGQEVEFEVGQ 55


>gi|110835605|ref|YP_694464.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2]
 gi|110648716|emb|CAL18192.1| cold-shock domain family protein [Alcanivorax borkumensis SK2]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+ +   + G DVF+H SA+  +G   L EGQ V+++  Q
Sbjct: 4  GTVKWFNESKGFGFISQD---DGGADVFVHFSAITGSGFKTLAEGQKVSFEIQQ 54


>gi|311897785|dbj|BAJ30193.1| putative cold shock protein [Kitasatospora setae KM-6054]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q 
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54


>gi|283851981|ref|ZP_06369257.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. FW1012B]
 gi|283572705|gb|EFC20689.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. FW1012B]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW++  KGYGFI  EG     DDVF+H S++   G   L EG++V ++ +  +
Sbjct: 1  MGFEGTVKWFSDKKGYGFIMREGQ----DDVFVHYSSIEGEGFRTLREGEIVNFEIIDGE 56

Query: 61 ANGK 64
             K
Sbjct: 57 RGPK 60


>gi|256831549|ref|YP_003160276.1| cold-shock DNA-binding domain-containing protein [Jonesia
          denitrificans DSM 20603]
 gi|256685080|gb|ACV07973.1| cold-shock DNA-binding domain protein [Jonesia denitrificans DSM
          20603]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI PE   +   DVF H SA+ + G   L E Q V +D  Q      
Sbjct: 4  GTVKWFNAEKGFGFIAPE---DGSADVFAHYSAIQTNGYRTLEENQRVEFDVAQGPKG-- 58

Query: 65 YSAENLK 71
            AEN++
Sbjct: 59 LQAENIR 65


>gi|153832932|ref|ZP_01985599.1| conserved domain protein [Vibrio harveyi HY01]
 gi|156976622|ref|YP_001447528.1| hypothetical protein VIBHAR_05396 [Vibrio harveyi ATCC BAA-1116]
 gi|269963648|ref|ZP_06177971.1| cold shock DNA-binding domain protein [Vibrio harveyi 1DA3]
 gi|148870855|gb|EDL69754.1| conserved domain protein [Vibrio harveyi HY01]
 gi|156528216|gb|ABU73301.1| hypothetical protein VIBHAR_05396 [Vibrio harveyi ATCC BAA-1116]
 gi|269831661|gb|EEZ85797.1| cold shock DNA-binding domain protein [Vibrio harveyi 1DA3]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V ++  Q     +
Sbjct: 7  GTVKWFNETKGFGFI----QQENGPDVFAHFSAIQGDGFRTLVEGQKVEFEITQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AE + LV
Sbjct: 63 --AEKITLV 69


>gi|91783753|ref|YP_558959.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|187924184|ref|YP_001895826.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|296163324|ref|ZP_06846084.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|91687707|gb|ABE30907.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
 gi|187715378|gb|ACD16602.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|295886416|gb|EFG66274.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G+D+F H S + S G  +L E Q V+++ ++    GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRSEGFKSLQENQKVSFE-IKQGPKGK 59

Query: 65 YSAE 68
           +A+
Sbjct: 60 QAAD 63


>gi|319760574|ref|YP_004124512.1| cold shock-like protein cspC [Candidatus Blochmannia vafer str.
          BVAF]
 gi|318039288|gb|ADV33838.1| cold shock-like protein cspC [Candidatus Blochmannia vafer str.
          BVAF]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G +KW+N  KG+GFITP   ++   DVF+H SA+   G   L+EGQ V ++
Sbjct: 5  KGQVKWFNESKGFGFITP---SDGSKDVFVHFSAIQGNGFKTLSEGQNVEFE 53


>gi|307823940|ref|ZP_07654168.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307735234|gb|EFO06083.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 4/52 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55
          G++KW+N  KG+GFI+P   ++   DVF+H SA+AS G +  L EGQ V YD
Sbjct: 4  GTVKWFNEAKGFGFISP---SDGSADVFVHFSAIASDGGYRTLAEGQAVKYD 52


>gi|295700731|ref|YP_003608624.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|295439944|gb|ADG19113.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G+D+F H S + ++G  +L E Q V+++ V+    GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIQASGFKSLQENQKVSFE-VKQGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|209521754|ref|ZP_03270439.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|209497821|gb|EDZ97991.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G+D+F H S + ++G  +L E Q V+++ V+    GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIQASGFKSLQENQKVSFE-VKQGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|26246906|ref|NP_752946.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli CFT073]
 gi|91209916|ref|YP_539902.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli UTI89]
 gi|110804882|ref|YP_688402.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella flexneri 5 str. 8401]
 gi|237707154|ref|ZP_04537635.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia sp. 3_2_53FAA]
 gi|291281884|ref|YP_003498702.1| Cold shock protein [Escherichia coli O55:H7 str. CB9615]
 gi|293414163|ref|ZP_06656812.1| cold shock domain-containing protein CspD [Escherichia coli B185]
 gi|293433178|ref|ZP_06661606.1| cold shock domain-containing protein CspD [Escherichia coli B088]
 gi|332282225|ref|ZP_08394638.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella sp. D9]
 gi|26107306|gb|AAN79489.1|AE016758_93 Cold shock-like protein cspD [Escherichia coli CFT073]
 gi|91071490|gb|ABE06371.1| cold shock-like protein CspD [Escherichia coli UTI89]
 gi|110614430|gb|ABF03097.1| cold shock protein [Shigella flexneri 5 str. 8401]
 gi|222032609|emb|CAP75348.1| Cold shock-like protein cspD [Escherichia coli LF82]
 gi|226898364|gb|EEH84623.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia sp. 3_2_53FAA]
 gi|281600209|gb|ADA73193.1| putative Cold shock protein [Shigella flexneri 2002017]
 gi|290761757|gb|ADD55718.1| Cold shock protein [Escherichia coli O55:H7 str. CB9615]
 gi|291323997|gb|EFE63419.1| cold shock domain-containing protein CspD [Escherichia coli B088]
 gi|291434221|gb|EFF07194.1| cold shock domain-containing protein CspD [Escherichia coli B185]
 gi|332104577|gb|EGJ07923.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella sp. D9]
          Length = 84

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 11 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQ 64


>gi|254388506|ref|ZP_05003740.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|294814077|ref|ZP_06772720.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442478|ref|ZP_08217212.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|197702227|gb|EDY48039.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|294326676|gb|EFG08319.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQ 53


>gi|239930514|ref|ZP_04687467.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291438875|ref|ZP_06578265.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341770|gb|EFE68726.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQ 53


>gi|226941142|ref|YP_002796216.1| hypothetical protein LHK_02223 [Laribacter hongkongensis HLHK9]
 gi|226716069|gb|ACO75207.1| cold-shock domain family protein [Laribacter hongkongensis HLHK9]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
             G++KW+N  KG+GFI+P+     GDD+F H + + + G   L EG+ VT++
Sbjct: 3  TQTGTVKWFNETKGFGFISPDA---GGDDLFAHFTEIQTKGFRTLAEGERVTFE 53


>gi|54295674|ref|YP_128089.1| hypothetical protein lpl2762 [Legionella pneumophila str. Lens]
 gi|296108496|ref|YP_003620197.1| Hypothetical Cold shock protein [Legionella pneumophila 2300/99
          Alcoy]
 gi|53755506|emb|CAH17005.1| hypothetical protein lpl2762 [Legionella pneumophila str. Lens]
 gi|295650398|gb|ADG26245.1| Hypothetical Cold shock protein [Legionella pneumophila 2300/99
          Alcoy]
 gi|307611722|emb|CBX01423.1| hypothetical protein LPW_31131 [Legionella pneumophila 130b]
          Length = 71

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH-RSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N DKGYGFI+ +      DDVF+H RS V+SAG   L EGQ V +  V   A G
Sbjct: 7  GHVKWFNDDKGYGFISRDNGQ---DDVFVHFRSIVSSAGRKTLLEGQRVEF-LVTKGAKG 62

Query: 64 KYSAE 68
            + E
Sbjct: 63 LQAEE 67


>gi|51246052|ref|YP_065936.1| cold-shock protein [Desulfotalea psychrophila LSv54]
 gi|50877089|emb|CAG36929.1| probable cold-shock protein [Desulfotalea psychrophila LSv54]
          Length = 66

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           G++KW+N  KG+GFI  EG    G DVF+H SA+   G  +LTEG  V ++ +
Sbjct: 3  EGTVKWFNDAKGFGFIEQEG----GQDVFVHYSAIGGEGFKSLTEGSRVNFEII 52


>gi|270055541|gb|ACZ59034.1| cold-shock protein C [Staphylococcus aureus]
          Length = 66

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N DKG+GFI  +  +    DVF+H S +A  G  +L EGQ V +D V+
Sbjct: 1  MNNGTVKWFNADKGFGFIERDNDS----DVFVHYSGIAGEGYKSLEEGQNVDFDIVE 53


>gi|156934624|ref|YP_001438540.1| hypothetical protein ESA_02458 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532878|gb|ABU77704.1| hypothetical protein ESA_02458 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 76

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQVVRFDVHQ 54


>gi|254386794|ref|ZP_05002084.1| cold shock protein [Streptomyces sp. Mg1]
 gi|194345629|gb|EDX26595.1| cold shock protein [Streptomyces sp. Mg1]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q 
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54


>gi|90408353|ref|ZP_01216516.1| cold shock DNA-binding domain protein [Psychromonas sp. CNPT3]
 gi|90310516|gb|EAS38638.1| cold shock DNA-binding domain protein [Psychromonas sp. CNPT3]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+ S G   L EGQ V +   Q     +
Sbjct: 7  GTVKWFNESKGFGFI----EQENGPDVFAHFSAIVSNGFKTLAEGQKVQFTVTQGQKGPQ 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 --AENI 66


>gi|51244812|ref|YP_064696.1| cold-shock protein [Desulfotalea psychrophila LSv54]
 gi|50875849|emb|CAG35689.1| probable cold-shock protein [Desulfotalea psychrophila LSv54]
          Length = 66

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KW+N  KG+GFI  EG    GDD+F+H S+++  G   L EG  V++D  Q
Sbjct: 3  EGTVKWFNDAKGFGFIEQEG----GDDLFVHYSSISGEGFKTLQEGTRVSFDIEQ 53


>gi|157831974|pdb|1MJC|A Chain A, Crystal Structure Of Cspa, The Major Cold Shock Protein
          Of Escherichia Coli
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ + G  +L EGQ V++
Sbjct: 6  GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 52


>gi|134293708|ref|YP_001117444.1| cold-shock DNA-binding protein family protein [Burkholderia
          vietnamiensis G4]
 gi|134136865|gb|ABO57979.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
          G4]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI+P+     GDD+F H S +   G   L EGQ V+Y+
Sbjct: 4  GTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSYE 51


>gi|73539164|ref|YP_299531.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|94314737|ref|YP_587946.1| cold-shock DNA-binding protein family [Cupriavidus metallidurans
          CH34]
 gi|116693962|ref|YP_728173.1| cold-shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|188591849|ref|YP_001796447.1| cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
 gi|72122501|gb|AAZ64687.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
 gi|93358589|gb|ABF12677.1| cold-shock DNA-binding protein family [Cupriavidus metallidurans
          CH34]
 gi|113528461|emb|CAJ94808.1| Cold-shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|170938223|emb|CAP63208.1| Cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G D+F H S +  +G   L +GQ VT++  Q     +
Sbjct: 4  GTVKWFNETKGFGFITPD---DGGADLFAHFSEIQGSGFKTLKDGQRVTFEVKQGPKGLQ 60

Query: 65 YSA 67
           SA
Sbjct: 61 ASA 63


>gi|332283953|ref|YP_004415864.1| cold-shock protein [Pusillimonas sp. T7-7]
 gi|330427906|gb|AEC19240.1| cold-shock protein [Pusillimonas sp. T7-7]
          Length = 80

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+     G+D+F H S++   G   L EGQ V ++  Q
Sbjct: 17 GTVKWFNDAKGFGFITPD---NGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIAQ 67


>gi|21222688|ref|NP_628467.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|302559987|ref|ZP_07312329.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
 gi|8248794|emb|CAB93055.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|11933021|emb|CAC19350.1| cold-shock like protein [Streptomyces coelicolor]
 gi|302477605|gb|EFL40698.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQ 53


>gi|115358650|ref|YP_775788.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria AMMD]
 gi|170699551|ref|ZP_02890592.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171317033|ref|ZP_02906238.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|172063386|ref|YP_001811037.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|115283938|gb|ABI89454.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
          AMMD]
 gi|170135569|gb|EDT03856.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171097817|gb|EDT42639.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|171995903|gb|ACB66821.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MC40-6]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI+P+     GDD+F H S +   G   L EGQ V+Y+
Sbjct: 4  GTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSYE 51


>gi|301160186|emb|CBW19708.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. SL1344]
 gi|323179480|gb|EFZ65047.1| cold shock-like protein cspG [Escherichia coli 1180]
          Length = 66

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ + G  +L EGQ V++
Sbjct: 3  GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 49


>gi|239981380|ref|ZP_04703904.1| cold shock protein [Streptomyces albus J1074]
 gi|291453236|ref|ZP_06592626.1| cold shock protein [Streptomyces albus J1074]
 gi|302552310|ref|ZP_07304652.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
 gi|291356185|gb|EFE83087.1| cold shock protein [Streptomyces albus J1074]
 gi|302469928|gb|EFL33021.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQ 53


>gi|224370369|ref|YP_002604533.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
 gi|223693086|gb|ACN16369.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
          Length = 86

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      E+G+D+F+H S++ + G  +L EG  VT+D  Q
Sbjct: 24 GTVKWFNDSKGFGFI----EQENGEDLFVHHSSINATGFKSLNEGDKVTFDVEQ 73


>gi|297193625|ref|ZP_06911023.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721828|gb|EDY65736.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQ 53


>gi|116748887|ref|YP_845574.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116697951|gb|ABK17139.1| cold-shock DNA-binding protein family [Syntrophobacter
          fumaroxidans MPOB]
          Length = 66

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI  EG    G DVF+H SA+   G  +L EG  V++   +  A G 
Sbjct: 4  GRVKWFNDSKGFGFIEREG----GSDVFVHYSAIEGEGFKSLAEGDRVSF-VAEQGAKGP 58

Query: 65 YSAENLKL 72
           +A+  KL
Sbjct: 59 QAAQVRKL 66


>gi|116626278|ref|YP_828434.1| cold-shock DNA-binding protein family protein [Candidatus
          Solibacter usitatus Ellin6076]
 gi|116229440|gb|ABJ88149.1| cold-shock DNA-binding protein family [Candidatus Solibacter
          usitatus Ellin6076]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M  +G++KW+N  KGYGFI      E+G+DVF+H SA+ + G   L EG  V ++  +
Sbjct: 1  MKEKGTVKWFNAAKGYGFI----QRENGEDVFVHFSAIQTEGYRTLDEGSSVEFEVTK 54


>gi|187477994|ref|YP_786018.1| cold shock-like protein [Bordetella avium 197N]
 gi|115422580|emb|CAJ49105.1| cold shock-like protein [Bordetella avium 197N]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KW+N +KGYGFITPE     G D+F H S + S G   L E Q V+Y
Sbjct: 1  METGVVKWFNAEKGYGFITPE---SGGKDLFAHFSEIQSNGFKTLEENQRVSY 50


>gi|40062711|gb|AAR37624.1| cold shock DNA-binding domain protein [uncultured marine
          bacterium 314]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N  KGYGFI  E   +   DVF+H +AV  AGL  L EG  +T++ V+N 
Sbjct: 1  MSLKGKVKWFNGKKGYGFIEREDKEK---DVFVHHTAVRDAGLKYLNEGDELTFE-VENG 56

Query: 61 ANGKYSAENLK 71
            G  SA NL+
Sbjct: 57 EKGP-SAVNLQ 66


>gi|290959448|ref|YP_003490630.1| cold shock protein [Streptomyces scabiei 87.22]
 gi|260648974|emb|CBG72088.1| cold shock protein [Streptomyces scabiei 87.22]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q 
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54


>gi|317053824|ref|YP_004117849.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
          At-9b]
 gi|316951819|gb|ADU71293.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
          Length = 70

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG++KW+N +KG+GFI+PE  ++   DVF+H SA+      +L EGQ V +
Sbjct: 6  RGTVKWFNSEKGFGFISPENGSK---DVFVHYSAIQGTDYRSLDEGQRVEF 53


>gi|120554651|ref|YP_959002.1| cold-shock DNA-binding domain-containing protein [Marinobacter
          aquaeolei VT8]
 gi|120324500|gb|ABM18815.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei
          VT8]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI  EG    G DVF+H SA+ + G   L EGQ V +   Q
Sbjct: 7  GHVKWFNESKGFGFIAQEG----GSDVFVHYSAINANGFRTLAEGQQVQFTVTQ 56


>gi|3891780|pdb|3MEF|A Chain A, Major Cold-Shock Protein From Escherichia Coli Solution
          Nmr Structure
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ + G  +L EGQ V++
Sbjct: 6  GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 52


>gi|152974668|ref|YP_001374185.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152023420|gb|ABS21190.1| putative cold-shock DNA-binding domain protein [Bacillus
          cytotoxicus NVH 391-98]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G    G DVF+H SA+ + G  +L EG+ V+++ ++N 
Sbjct: 1  MTVTGQVKWFNNEKGFGFIEVPG----GSDVFVHFSAITTEGFKSLEEGEKVSFE-IENG 55

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 56 NRGPQAKNVVKL 67


>gi|238762119|ref|ZP_04623092.1| Cold shock-like protein cspD [Yersinia kristensenii ATCC 33638]
 gi|238699847|gb|EEP92591.1| Cold shock-like protein cspD [Yersinia kristensenii ATCC 33638]
          Length = 85

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFD 51


>gi|170723258|ref|YP_001750946.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida W619]
 gi|169761261|gb|ACA74577.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI  EG    G DVF+H  A+   G   L EGQ V Y  VQ
Sbjct: 7  GNVKWFNDAKGFGFIQREG----GADVFVHYRAIRGEGHRTLVEGQRVEYSCVQ 56


>gi|304396175|ref|ZP_07378057.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|308187103|ref|YP_003931234.1| Cold shock-like protein cspC [Pantoea vagans C9-1]
 gi|304356544|gb|EFM20909.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|308057613|gb|ADO09785.1| Cold shock-like protein cspC [Pantoea vagans C9-1]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQSVEFE-IQDGQKG 60


>gi|182437019|ref|YP_001824738.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|239943163|ref|ZP_04695100.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|239989621|ref|ZP_04710285.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
 gi|282860556|ref|ZP_06269622.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|291446637|ref|ZP_06586027.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|326777634|ref|ZP_08236899.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178465535|dbj|BAG20055.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|282564292|gb|EFB69828.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|291349584|gb|EFE76488.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|320009370|gb|ADW04220.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
 gi|326657967|gb|EGE42813.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q 
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54


>gi|302392304|ref|YP_003828124.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum
          DSM 5501]
 gi|302204381|gb|ADL13059.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum
          DSM 5501]
          Length = 66

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KGYGFI   G     DDVF+H SA+   G   L EGQ V +  V+ D  G 
Sbjct: 4  GTVKWFDGKKGYGFIEVPGE----DDVFVHFSAIEEEGFKTLEEGQEVQFKVVEGD-KGP 58

Query: 65 YSAENLKL 72
           + E  K+
Sbjct: 59 QAEEVTKI 66


>gi|163857106|ref|YP_001631404.1| cold shock-like protein [Bordetella petrii DSM 12804]
 gi|163260834|emb|CAP43136.1| cold shock-like protein [Bordetella petrii]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFITP+  ++   D+F H S ++S G  +L E Q VT++  Q      
Sbjct: 4  GIVKWFNAEKGYGFITPDDGSK---DLFAHYSEISSEGYKSLQENQRVTFEVGQGPKGP- 59

Query: 65 YSAENLKL 72
           SA+N+K+
Sbjct: 60 -SAKNIKV 66


>gi|146283150|ref|YP_001173303.1| cold-shock DNA-binding protein [Pseudomonas stutzeri A1501]
 gi|145571355|gb|ABP80461.1| cold-shock DNA-binding protein [Pseudomonas stutzeri A1501]
          Length = 243

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI    S +SGDDVF+H  A+   G   L EGQ V +  +  D
Sbjct: 177 GTVKWFNTSKGFGFI----SRDSGDDVFVHFRAIRGEGHRILVEGQRVEFTIMMRD 228


>gi|320352985|ref|YP_004194324.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
          DSM 2032]
 gi|320121487|gb|ADW17033.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
          DSM 2032]
          Length = 66

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          +G++KW+N  KG+GFI      E+G DVF+H SA++ +G   L EG  V ++ V
Sbjct: 3  KGTVKWFNESKGFGFI----EQEAGKDVFVHYSAISGSGFKTLNEGDKVQFEIV 52


>gi|300722953|ref|YP_003712249.1| Qin prophage; cold shock protein [Xenorhabdus nematophila ATCC
          19061]
 gi|297629466|emb|CBJ90067.1| Qin prophage; cold shock protein [Xenorhabdus nematophila ATCC
          19061]
          Length = 71

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI+P   ++   DVF+H SA+ S     L+EGQ V +  ++N A G 
Sbjct: 7  GLVKWFNADKGFGFISP---SDGSKDVFVHFSAIQSNDYRTLSEGQKVEFT-IENGAKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|323343048|ref|ZP_08083279.1| CspA family cold shock transcriptional regulator [Erysipelothrix
          rhusiopathiae ATCC 19414]
 gi|322463112|gb|EFY08307.1| CspA family cold shock transcriptional regulator [Erysipelothrix
          rhusiopathiae ATCC 19414]
          Length = 66

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N DKG+GFI     T+SG ++F+H S + S G   L +G +VT+D +++D 
Sbjct: 1  MESGKVKFFNADKGFGFII----TDSGKEIFVHYSGIISDGFKTLNDGDVVTFD-IESDT 55

Query: 62 NGKYSAENLKL 72
           G   A N+K+
Sbjct: 56 RGD-KAINVKV 65


>gi|88703658|ref|ZP_01101374.1| cold shock DNA-binding domain protein [Congregibacter litoralis
          KT71]
 gi|88702372|gb|EAQ99475.1| cold shock DNA-binding domain protein [Congregibacter litoralis
          KT71]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      +SG DVF H SA+  +G   L EGQ V +   Q     +
Sbjct: 7  GTVKWFNESKGFGFI----EQKSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 63 --AENIVAV 69


>gi|123441858|ref|YP_001005841.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|332162200|ref|YP_004298777.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|122088819|emb|CAL11625.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|318606256|emb|CBY27754.1| cold shock proteins [Yersinia enterocolitica subsp. palearctica
          Y11]
 gi|325666430|gb|ADZ43074.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330862901|emb|CBX73038.1| cold shock-like protein cspE [Yersinia enterocolitica W22703]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y  +Q+   G 
Sbjct: 6  GQVKWFNEAKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYT-IQDSPRGP 61

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 62 AAANVVAL 69


>gi|302873916|ref|YP_003842549.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307689837|ref|ZP_07632283.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302576773|gb|ADL50785.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans
          743B]
          Length = 65

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFIT     E G DVF H S + S G  +L E Q V+Y+ V  D    
Sbjct: 3  GTVKWFNAQKGFGFITG----EDGKDVFAHFSKINSDGYKSLEENQKVSYEVV--DGQKG 56

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 57 PQAENITII 65


>gi|297200544|ref|ZP_06917941.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|197709669|gb|EDY53703.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q 
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54


>gi|308177559|ref|YP_003916965.1| cold shock protein [Arthrobacter arilaitensis Re117]
 gi|307745022|emb|CBT75994.1| cold shock protein [Arthrobacter arilaitensis Re117]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N +KG+GFI P   ++   DVF H SA+ S G  +L EGQ V Y
Sbjct: 4  GTVKWFNAEKGFGFIAP---SDGSADVFAHYSAIQSFGFRSLEEGQTVEY 50


>gi|238782952|ref|ZP_04626980.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
 gi|238716155|gb|EEQ08139.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
          Length = 70

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLEEGQNVEFS-IENGAKGP 62

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 63 AAANVVAL 70


>gi|260597282|ref|YP_003209853.1| Cold shock-like protein cspD [Cronobacter turicensis z3032]
 gi|260216459|emb|CBA29590.1| Cold shock-like protein cspD [Cronobacter turicensis z3032]
          Length = 99

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q
Sbjct: 27 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQVVRFDVHQ 77


>gi|257454785|ref|ZP_05620036.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
 gi|257447718|gb|EEV22710.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
          Length = 70

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI  +     G DVF H S +AS+G   L+EGQ V++   Q
Sbjct: 7  GTVKWFNESKGFGFIEQD---NGGKDVFAHYSQIASSGFKTLSEGQRVSFVVTQ 57


>gi|222099783|ref|YP_002534351.1| Cold-shock DNA-binding protein family [Thermotoga neapolitana DSM
          4359]
 gi|221572173|gb|ACM22985.1| Cold-shock DNA-binding protein family [Thermotoga neapolitana DSM
          4359]
          Length = 78

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          RG++KW++  KGYGFIT     E+G+D+F+H SA+   G   L E + V +D  Q
Sbjct: 14 RGTVKWFDSKKGYGFIT----MENGEDIFVHWSAIQMDGFKTLRENEPVEFDVQQ 64


>gi|302544467|ref|ZP_07296809.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
 gi|307327771|ref|ZP_07606955.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|11933034|emb|CAC19354.1| cold-shock like protein [Streptomyces hygroscopicus]
 gi|297158355|gb|ADI08067.1| putative cold shock protein [Streptomyces bingchenggensis BCW-1]
 gi|302462085|gb|EFL25178.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
 gi|306886669|gb|EFN17671.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q 
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54


>gi|320323059|gb|EFW79148.1| cold-shock protein [Pseudomonas syringae pv. glycinea str. B076]
          Length = 120

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 54  GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 108

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 109 QAEDVIAALPR 119


>gi|209877068|ref|XP_002139976.1| cold-shock DNA-binding domain-containing protein [Cryptosporidium
          muris RN66]
 gi|209555582|gb|EEA05627.1| cold-shock DNA-binding domain-containing protein [Cryptosporidium
          muris RN66]
          Length = 119

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M H G  KW++  KG+GFITP+  +E   D+F+H+  +   G  +L + + V Y+ V+ D
Sbjct: 1  MPHSGVCKWFDSAKGFGFITPDDGSE---DIFVHQQNIKVEGFRSLGQAERVEYE-VETD 56

Query: 61 ANGKYSAENL 70
            G+  A N+
Sbjct: 57 DKGRRKAVNV 66


>gi|26249019|ref|NP_755059.1| cold shock-like protein cspI [Escherichia coli CFT073]
 gi|157161028|ref|YP_001458346.1| cold shock DNA-binding protein [Escherichia coli HS]
 gi|26109426|gb|AAN81629.1|AE016765_31 Cold shock-like protein cspI [Escherichia coli CFT073]
 gi|157066708|gb|ABV05963.1| cold shock DNA-binding protein [Escherichia coli HS]
 gi|315293040|gb|EFU52392.1| transcriptional repressor activity CueR [Escherichia coli MS
          153-1]
          Length = 71

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP+KG+GFITP+  ++   DVF+H SA+ S     LTE Q V +  ++N   G 
Sbjct: 8  GLVKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFKTLTENQEVEFG-IENGPKGP 63

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 64 AAVHVVAL 71


>gi|89093186|ref|ZP_01166136.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp.
          MED92]
 gi|89082482|gb|EAR61704.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp.
          MED92]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N +KG+GFI      E+G DVF H SA+   G  +L EGQ V +   Q  
Sbjct: 1  MATTGTVKWFNDEKGFGFI----EQENGPDVFAHFSAIQGDGFKSLAEGQKVEFTITQGQ 56

Query: 61 ANGKYSAENL 70
             +  AEN+
Sbjct: 57 KGPQ--AENI 64


>gi|309702046|emb|CBJ01360.1| cold shock-like protein CspC [Escherichia coli ETEC H10407]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDSQKG 60


>gi|16129511|ref|NP_416070.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. MG1655]
 gi|89108394|ref|AP_002174.1| cold shock protein [Escherichia coli str. K-12 substr. W3110]
 gi|170020098|ref|YP_001725052.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli ATCC 8739]
 gi|170081220|ref|YP_001730540.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|191169221|ref|ZP_03030975.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|193066944|ref|ZP_03047913.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194436556|ref|ZP_03068657.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|218551648|ref|YP_002385440.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
          35469]
 gi|218554114|ref|YP_002387027.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
 gi|218561575|ref|YP_002394488.1| cold shock protein; Qin prophage [Escherichia coli S88]
 gi|218699878|ref|YP_002407507.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
 gi|218705054|ref|YP_002412573.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
 gi|238900772|ref|YP_002926568.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
 gi|254161612|ref|YP_003044720.1| cold shock protein [Escherichia coli B str. REL606]
 gi|256022767|ref|ZP_05436632.1| cold shock protein [Escherichia sp. 4_1_40B]
 gi|260855290|ref|YP_003229181.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368]
 gi|297521188|ref|ZP_06939574.1| cold shock protein; Qin prophage [Escherichia coli OP50]
 gi|300899658|ref|ZP_07117889.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300903922|ref|ZP_07121817.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300917740|ref|ZP_07134386.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300938341|ref|ZP_07153095.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|301025109|ref|ZP_07188703.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|301307308|ref|ZP_07213320.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|301326423|ref|ZP_07219775.1| transcriptional repressor activity CueR [Escherichia coli MS
          78-1]
 gi|301647713|ref|ZP_07247506.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|307138206|ref|ZP_07497562.1| cold shock protein; Qin prophage [Escherichia coli H736]
 gi|307310883|ref|ZP_07590529.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|312969564|ref|ZP_07783747.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|331642140|ref|ZP_08343275.1| conserved domain protein [Escherichia coli H736]
 gi|331652930|ref|ZP_08353935.1| conserved domain protein [Escherichia coli M718]
 gi|331668007|ref|ZP_08368862.1| conserved domain protein [Escherichia coli TA271]
 gi|331673141|ref|ZP_08373909.1| conserved domain protein [Escherichia coli TA280]
 gi|331683057|ref|ZP_08383658.1| conserved domain protein [Escherichia coli H299]
 gi|71154170|sp|P0A987|CSPI_ECOL6 RecName: Full=Cold shock-like protein CspI; Short=CPS-I
 gi|71154171|sp|P0A986|CSPI_ECOLI RecName: Full=Cold shock-like protein CspI; Short=CPS-I
 gi|1742550|dbj|BAA15254.1| cold shock protein [Escherichia coli str. K12 substr. W3110]
 gi|1787834|gb|AAC74625.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. MG1655]
 gi|169755026|gb|ACA77725.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|169889055|gb|ACB02762.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|190900732|gb|EDV60527.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|192959534|gb|EDV89968.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194424588|gb|EDX40574.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|218359190|emb|CAQ91855.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
          35469]
 gi|218360882|emb|CAQ98452.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
 gi|218368344|emb|CAR06163.1| cold shock protein; Qin prophage [Escherichia coli S88]
 gi|218369864|emb|CAR17638.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
 gi|218432151|emb|CAR13039.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
 gi|222033313|emb|CAP76053.1| Cold shock-like protein cspI [Escherichia coli LF82]
 gi|238863367|gb|ACR65365.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
 gi|253973513|gb|ACT39184.1| cold shock protein [Escherichia coli B str. REL606]
 gi|257753939|dbj|BAI25441.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368]
 gi|260449326|gb|ACX39748.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|300356783|gb|EFJ72653.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300396218|gb|EFJ79756.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|300404082|gb|EFJ87620.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300415017|gb|EFJ98327.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300456677|gb|EFK20170.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|300837501|gb|EFK65261.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|300846839|gb|EFK74599.1| transcriptional repressor activity CueR [Escherichia coli MS
          78-1]
 gi|301074148|gb|EFK88954.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|306909061|gb|EFN39557.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|310337849|gb|EFQ02938.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|312946155|gb|ADR26982.1| putative cold shock protein [Escherichia coli O83:H1 str. NRG
          857C]
 gi|315060851|gb|ADT75178.1| Qin prophage; cold shock protein [Escherichia coli W]
 gi|315136193|dbj|BAJ43352.1| cold shock DNA-binding protein [Escherichia coli DH1]
 gi|315253268|gb|EFU33236.1| transcriptional repressor activity CueR [Escherichia coli MS
          85-1]
 gi|320178969|gb|EFW53930.1| Cold shock protein CspI [Shigella boydii ATCC 9905]
 gi|320197740|gb|EFW72348.1| Cold shock protein CspI [Escherichia coli EC4100B]
 gi|320643970|gb|EFX13059.1| putative cold shock protein [Escherichia coli O157:H- str.
          493-89]
 gi|320649396|gb|EFX17940.1| putative cold shock protein [Escherichia coli O157:H- str. H
          2687]
 gi|320660357|gb|EFX27831.1| putative cold shock protein [Escherichia coli O55:H7 str. USDA
          5905]
 gi|323156718|gb|EFZ42856.1| cold shock-like protein cspI [Escherichia coli EPECa14]
 gi|323378579|gb|ADX50847.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323942031|gb|EGB38209.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323947939|gb|EGB43934.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323962248|gb|EGB57839.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H489]
 gi|323973806|gb|EGB68980.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|331038938|gb|EGI11158.1| conserved domain protein [Escherichia coli H736]
 gi|331049028|gb|EGI21100.1| conserved domain protein [Escherichia coli M718]
 gi|331064749|gb|EGI36653.1| conserved domain protein [Escherichia coli TA271]
 gi|331069339|gb|EGI40726.1| conserved domain protein [Escherichia coli TA280]
 gi|331079272|gb|EGI50469.1| conserved domain protein [Escherichia coli H299]
 gi|332343261|gb|AEE56595.1| cold shock-like protein CspI [Escherichia coli UMNK88]
          Length = 70

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP+KG+GFITP+  ++   DVF+H SA+ S     LTE Q V +  ++N   G 
Sbjct: 7  GLVKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFKTLTENQEVEFG-IENGPKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 AAVHVVAL 70


>gi|326406197|gb|ADZ63268.1| cold shock protein beta-ribbon [Lactococcus lactis subsp. lactis
          CV56]
          Length = 91

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++  G++KW+N  KG+GFIT    +E G D+F H S++ S G  +L EGQ V +D
Sbjct: 25 IMANGTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEGQKVEFD 75


>gi|302187164|ref|ZP_07263837.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. syringae
           642]
          Length = 139

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 73  GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 127

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 128 QAEDVIAALPR 138


>gi|288817819|ref|YP_003432166.1| cold shock protein [Hydrogenobacter thermophilus TK-6]
 gi|288787218|dbj|BAI68965.1| cold shock protein [Hydrogenobacter thermophilus TK-6]
 gi|308751417|gb|ADO44900.1| cold-shock DNA-binding domain protein [Hydrogenobacter
          thermophilus TK-6]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW++ +KGYGFIT +   ++  DVF+H SA+   G   L +GQ V ++ ++ D
Sbjct: 1  MALKGTVKWFSKEKGYGFITRD---DNQGDVFVHFSAIQQRGFKTLEQGQRVEFE-IEED 56

Query: 61 ANGKYSAENLKLV 73
          + G   A+N++ +
Sbjct: 57 SKGP-RAKNVRPI 68


>gi|282856781|ref|ZP_06266042.1| conserved domain protein [Pyramidobacter piscolens W5455]
 gi|282585404|gb|EFB90711.1| conserved domain protein [Pyramidobacter piscolens W5455]
          Length = 70

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +KW+N  KG+GFIT    TE G DVF+H SA+   G  +L E + V +D V  +
Sbjct: 7  KGKVKWFNSTKGFGFIT----TEEGKDVFVHFSAIKMDGYKSLEENEEVEFDVVDGE 59


>gi|281492698|ref|YP_003354678.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|281376355|gb|ADA65845.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
          Length = 66

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFIT    +E G D+F H S++ S G  +L EGQ V +D
Sbjct: 4  GTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEGQKVEFD 50


>gi|82701971|ref|YP_411537.1| cold-shock DNA-binding domain-containing protein [Nitrosospira
          multiformis ATCC 25196]
 gi|82410036|gb|ABB74145.1| cold-shock DNA-binding protein family [Nitrosospira multiformis
          ATCC 25196]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW++ DKG+GFIT   S E G D+F H S++   G   L E Q VT+D V
Sbjct: 6  GIVKWFSDDKGFGFIT---SDEGGKDLFAHFSSIVGEGFKTLQEAQRVTFDVV 55


>gi|74316697|ref|YP_314437.1| cold-shock DNA-binding protein family protein [Thiobacillus
          denitrificans ATCC 25259]
 gi|74056192|gb|AAZ96632.1| Possible Cold-shock DNA-binding domain protein [Thiobacillus
          denitrificans ATCC 25259]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H SA+ + G  +L E Q V+++ V    
Sbjct: 1  METGTVKWFNDAKGFGFITPD---NGGEDLFAHFSAINANGFKSLQENQRVSFE-VTTGP 56

Query: 62 NGKYSAENLKLV 73
           GK  A N+++V
Sbjct: 57 KGK-QASNIQVV 67


>gi|33519902|ref|NP_878734.1| cold shock-like protein CspC [Candidatus Blochmannia floridanus]
 gi|33504247|emb|CAD83510.1| cold shock-like protein CspC [Candidatus Blochmannia floridanus]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L+EGQ V ++ VQ+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLSEGQNVEFE-VQDGHKG 60


>gi|330877987|gb|EGH12136.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. glycinea
          str. race 4]
          Length = 73

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 7  GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVGFS-VMNRDKGL 61

Query: 65 YSAENLKLVPK 75
           + + +  +P+
Sbjct: 62 QAEDVIAALPR 72


>gi|94314090|ref|YP_587299.1| cold-shock DNA-binding domain-containing protein [Cupriavidus
           metallidurans CH34]
 gi|93357942|gb|ABF12030.1| cold-shock DNA-binding domain protein [Cupriavidus metallidurans
           CH34]
          Length = 126

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G++KW+N  KG+GFITP+     GDD+F H S V   G  +L EGQ V Y
Sbjct: 63  GTVKWFNDSKGFGFITPDA---GGDDLFAHFSEVQGNGFKSLQEGQKVRY 109


>gi|329941434|ref|ZP_08290713.1| cold shock protein [Streptomyces griseoaurantiacus M045]
 gi|11933043|emb|CAC19357.1| cold-shock like protein [Streptomyces nodosus]
 gi|329299965|gb|EGG43864.1| cold shock protein [Streptomyces griseoaurantiacus M045]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q 
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54


>gi|94313078|ref|YP_586287.1| cold-shock DNA-binding domain-containing protein [Cupriavidus
          metallidurans CH34]
 gi|93356930|gb|ABF11018.1| cold-shock DNA-binding domain protein, anti-terminator of
          transcription [Cupriavidus metallidurans CH34]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G++KW+N  KG+GFITP+     G+D+F H SA+   G  +L EGQ V Y
Sbjct: 1  METGTVKWFNDAKGFGFITPDA---GGNDLFAHFSAIEGNGFKSLKEGQKVRY 50


>gi|323486640|ref|ZP_08091961.1| hypothetical protein HMPREF9474_03712 [Clostridium symbiosum
          WAL-14163]
 gi|323692214|ref|ZP_08106457.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14673]
 gi|323400021|gb|EGA92398.1| hypothetical protein HMPREF9474_03712 [Clostridium symbiosum
          WAL-14163]
 gi|323503788|gb|EGB19607.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14673]
          Length = 66

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGFI    S E G+DVF+H S +   G  +L EG  V ++ V N A
Sbjct: 1  MNKGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLEEGAQVEFEVV-NGA 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 KGPQATNVVKL 66


>gi|327440809|dbj|BAK17174.1| cold shock protein [Solibacillus silvestris StLB046]
          Length = 66

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  EG    G DVF H SA+   G   L EGQ V +  V++   G
Sbjct: 3  QGTVKWFNSEKGFGFIEVEG----GSDVFAHFSAIQGDGFKTLEEGQKVEFS-VEDGQRG 57

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 58 PQATNIVKL 66


>gi|226359632|ref|YP_002777410.1| cold shock protein [Rhodococcus opacus B4]
 gi|226238117|dbj|BAH48465.1| cold shock protein [Rhodococcus opacus B4]
          Length = 81

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G+++W+N D+G+GF+ P    +  DDVF+H S +A  G   L EGQ V++   + D
Sbjct: 18 GTVRWFNADQGFGFLAP---ADGSDDVFVHVSEIAGDGHRILVEGQRVSFTVCRTD 70


>gi|114778644|ref|ZP_01453460.1| cold shock protein [Mariprofundus ferrooxydans PV-1]
 gi|114551109|gb|EAU53670.1| cold shock protein [Mariprofundus ferrooxydans PV-1]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI  +   + GDDVF+H SA+ + G  +L EGQ V ++
Sbjct: 4  GTVKWFNDTKGFGFIAQD---DGGDDVFVHFSAIQTDGFKSLQEGQKVEFE 51


>gi|309701157|emb|CBJ00457.1| cold shock-like protein CspD [Escherichia coli ETEC H10407]
 gi|323937987|gb|EGB34249.1| cold shock domain-containing protein CspD [Escherichia coli
          E1520]
          Length = 74

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 1  MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQ 54


>gi|153876303|ref|ZP_02003697.1| Cold shock protein [Beggiatoa sp. PS]
 gi|152067232|gb|EDN66302.1| Cold shock protein [Beggiatoa sp. PS]
          Length = 71

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  E     G DVF+H +++ + G  +L EGQ VT +  Q      
Sbjct: 8  GTVKWFNDSKGFGFIEQEAG---GPDVFVHHTSIQADGFKSLQEGQKVTMEVTQGQKG-- 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 LQAENV 68


>gi|153008980|ref|YP_001370195.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
          anthropi ATCC 49188]
 gi|151560868|gb|ABS14366.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
          anthropi ATCC 49188]
          Length = 71

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N +KG+GFI P+   + G D+F+H SAV ++GL  L + Q V+Y+  + D
Sbjct: 1  MAQTGLVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLTGLADNQKVSYE-TEPD 56

Query: 61 ANGK 64
            GK
Sbjct: 57 RRGK 60


>gi|153955581|ref|YP_001396346.1| hypothetical protein CKL_2966 [Clostridium kluyveri DSM 555]
 gi|219855966|ref|YP_002473088.1| hypothetical protein CKR_2623 [Clostridium kluyveri NBRC 12016]
 gi|146348439|gb|EDK34975.1| Hypothetical protein CKL_2966 [Clostridium kluyveri DSM 555]
 gi|219569690|dbj|BAH07674.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 65

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N +KG+GFIT     E G+D+F H S + S G   L EGQ V++D
Sbjct: 3  GTVKWFNGNKGFGFITG----EDGNDIFAHFSQINSQGYKTLEEGQKVSFD 49


>gi|90578292|ref|ZP_01234103.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|90441378|gb|EAS66558.1| putative Cold shock-like protein [Vibrio angustum S14]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ V++D  Q
Sbjct: 6  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVSFDIEQ 56


>gi|120556517|ref|YP_960868.1| cold-shock DNA-binding domain-containing protein [Marinobacter
          aquaeolei VT8]
 gi|120326366|gb|ABM20681.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei
          VT8]
 gi|311696264|gb|ADP99137.1| cold shock, CspA [marine bacterium HP15]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFIT EG    G DVF+H SA+  +G   L EGQ V +   Q     +
Sbjct: 6  GTVKFFNEAKGFGFITREG----GPDVFVHYSAIQGSGFKTLAEGQQVEFTVTQGQKGPQ 61

Query: 65 YSAENL 70
            AEN+
Sbjct: 62 --AENV 65


>gi|330448696|ref|ZP_08312344.1| cold-shock domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328492887|dbj|GAA06841.1| cold-shock domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ V++D  Q
Sbjct: 6  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVSFDIEQ 56


>gi|308049700|ref|YP_003913266.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM
          9799]
 gi|307631890|gb|ADN76192.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM
          9799]
          Length = 69

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N  KG+GFI PEG    G+DVF H S +   G   L  GQ+V ++
Sbjct: 3  QGTVKWFNNAKGFGFICPEG---GGEDVFAHYSTIEMEGYRTLKAGQVVEFE 51


>gi|300925271|ref|ZP_07141166.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|300418604|gb|EFK01915.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
          Length = 71

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP+KG+GFITP+  ++   DVF+H SA+ S     LTE Q V +  ++N   G 
Sbjct: 8  GLVKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFKTLTENQEVEFG-IENGPKGP 63

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 64 AAVHVVAL 71


>gi|284921457|emb|CBG34526.1| cold shock-like protein [Escherichia coli 042]
          Length = 70

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP+KG+GFITP+   +   DVF+H SA+ S     LTE Q V +  ++N   G 
Sbjct: 7  GLVKWFNPEKGFGFITPK---DGSKDVFVHFSAIQSNDFKTLTENQEVEFG-IENGPKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 AAVHVVAL 70


>gi|269139481|ref|YP_003296182.1| major cold shock protein [Edwardsiella tarda EIB202]
 gi|267985142|gb|ACY84971.1| major cold shock protein [Edwardsiella tarda EIB202]
 gi|304559373|gb|ADM42037.1| Cold shock protein CspG [Edwardsiella tarda FL6-60]
          Length = 71

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          GS+KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +  V+N   G
Sbjct: 7  GSVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNEFRTLDEGQQVEFS-VENGPKG 61


>gi|260460198|ref|ZP_05808450.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033843|gb|EEW35102.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 199

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KWY+P KG+GFI P    +   D F+H +A+  +G+  L EGQ+V  +  Q    GK
Sbjct: 136 GTVKWYDPQKGFGFIAP---NKGEKDAFVHATALTRSGISELLEGQMVLVECGQ----GK 188

Query: 65  YSAENLKL 72
              E L +
Sbjct: 189 KGLEVLSI 196


>gi|146318066|ref|YP_001197778.1| cold shock protein [Streptococcus suis 05ZYH33]
 gi|146320244|ref|YP_001199955.1| cold shock protein [Streptococcus suis 98HAH33]
 gi|253751260|ref|YP_003024401.1| cold shock protein [Streptococcus suis SC84]
 gi|253753161|ref|YP_003026301.1| cold shock protein [Streptococcus suis P1/7]
 gi|253754984|ref|YP_003028124.1| cold shock protein [Streptococcus suis BM407]
 gi|145688872|gb|ABP89378.1| Cold shock protein [Streptococcus suis 05ZYH33]
 gi|145691050|gb|ABP91555.1| Cold shock protein [Streptococcus suis 98HAH33]
 gi|251815549|emb|CAZ51132.1| cold shock protein [Streptococcus suis SC84]
 gi|251817448|emb|CAZ55189.1| cold shock protein [Streptococcus suis BM407]
 gi|251819406|emb|CAR44864.1| cold shock protein [Streptococcus suis P1/7]
 gi|292557828|gb|ADE30829.1| Cold shock protein [Streptococcus suis GZ1]
 gi|319757539|gb|ADV69481.1| cold shock protein [Streptococcus suis JS14]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI    + E+G DVF H S + S G  +L +GQ VT++  Q
Sbjct: 3  QGTVKWFNAEKGFGFI----AQENGPDVFAHFSEIQSNGFKSLEDGQKVTFEVEQ 53


>gi|39995301|ref|NP_951252.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA]
 gi|39982063|gb|AAR33525.1| cold-shock domain family protein [Geobacter sulfurreducens PCA]
 gi|298504306|gb|ADI83029.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
          KN400]
          Length = 66

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+      E+G+DVF H SA++  G  +LTEG  VT++  +
Sbjct: 4  GTVKWFNDSKGFGFL----EQENGEDVFCHFSAISGDGFKSLTEGDRVTFEITK 53


>gi|85860950|ref|YP_463154.1| cold shock protein [Syntrophus aciditrophicus SB]
 gi|85724041|gb|ABC78984.1| cold shock protein [Syntrophus aciditrophicus SB]
          Length = 132

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    + ++G+DVF+H SA+   G   L EG  V +D V+   N  
Sbjct: 70  GTVKWFNASKGFGFI----AQDNGNDVFVHFSAIKMEGYKALEEGARVRFDVVK--GNKG 123

Query: 65  YSAENLKLV 73
            +A+N++L+
Sbjct: 124 PAADNVELL 132


>gi|238795829|ref|ZP_04639342.1| Cold shock-like protein cspD [Yersinia mollaretii ATCC 43969]
 gi|238720292|gb|EEQ12095.1| Cold shock-like protein cspD [Yersinia mollaretii ATCC 43969]
          Length = 85

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFD 51


>gi|238025342|ref|YP_002909574.1| Cold-shock DNA-binding domain-containing protein [Burkholderia
          glumae BGR1]
 gi|237880007|gb|ACR32339.1| Cold-shock DNA-binding domain protein [Burkholderia glumae BGR1]
          Length = 67

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFITP+  +E   DVF+H S +  +G  +L + Q V Y+ V+   
Sbjct: 1  MYTGTVKWFNDAKGFGFITPDDGSE---DVFVHFSEIQVSGFKSLQDSQRVRYE-VRTGP 56

Query: 62 NGKYSAE 68
           GK +A+
Sbjct: 57 KGKQAAD 63


>gi|237736040|ref|ZP_04566521.1| cold-shock protein [Fusobacterium mortiferum ATCC 9817]
 gi|229421854|gb|EEO36901.1| cold-shock protein [Fusobacterium mortiferum ATCC 9817]
          Length = 71

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GF+T    +E G D F+H + +   G   L EGQ VT++  +
Sbjct: 8  KGTVKWFNKEKGFGFVT----SEDGADYFVHFTGIVGEGFRTLEEGQAVTFEVTE 58


>gi|323169843|gb|EFZ55499.1| cold shock-like protein cspI [Escherichia coli LT-68]
          Length = 66

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP+KG+GFITP+  ++   DVF+H SA+ S     LTE Q V +  ++N   G 
Sbjct: 3  GLVKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFKTLTENQEVEFG-IENGPKGP 58

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 59 AAVHVVAL 66


>gi|225027993|ref|ZP_03717185.1| hypothetical protein EUBHAL_02262 [Eubacterium hallii DSM 3353]
 gi|224954707|gb|EEG35916.1| hypothetical protein EUBHAL_02262 [Eubacterium hallii DSM 3353]
          Length = 89

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N  KGYGFI      ESG D+F+H + +   G  +L EG  V +D VQ +
Sbjct: 22 MFKGTVKWFNNQKGYGFI----QDESGKDIFVHYTGLNMPGFKSLEEGNEVEFDIVQGE 76


>gi|262275442|ref|ZP_06053252.1| putative Cold shock-like protein [Grimontia hollisae CIP 101886]
 gi|262220687|gb|EEY72002.1| putative Cold shock-like protein [Grimontia hollisae CIP 101886]
          Length = 68

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI      E+G DVF+H  A+   G   L EGQ V ++  Q
Sbjct: 6  GTVKWFNEEKGFGFI----QQENGPDVFVHFRAITGEGFKTLAEGQQVAFEIEQ 55


>gi|238797907|ref|ZP_04641398.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
 gi|238718212|gb|EEQ10037.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
          Length = 66

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 3  GLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLEEGQNVEFS-IENGAKGP 58

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 59 AAANVVAL 66


>gi|156933606|ref|YP_001437522.1| hypothetical protein ESA_01428 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156531860|gb|ABU76686.1| hypothetical protein ESA_01428 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 90

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 26 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 81


>gi|15805932|ref|NP_294631.1| CSD family cold shock protein [Deinococcus radiodurans R1]
 gi|6458627|gb|AAF10483.1|AE001943_3 cold shock protein, CSD family [Deinococcus radiodurans R1]
          Length = 133

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +KW+N +KG+GFI  EGS     DVF H SA+ S+G   L EG  V ++ ++   NGK
Sbjct: 51  GRVKWFNAEKGFGFIETEGSA----DVFAHYSAINSSGFRKLNEGDEVEFE-IEPGQNGK 105


>gi|332996322|gb|EGK15949.1| cold shock-like protein cspG [Shigella flexneri VA-6]
          Length = 70

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ + G  +L EGQ V++
Sbjct: 7  GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNYGYKSLDEGQKVSF 53


>gi|332995286|gb|AEF05341.1| putative cold shock-like protein cspG [Alteromonas sp. SN2]
          Length = 69

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N DKGYGF+T +     G DVF+H  A+ S G   L EGQ V ++
Sbjct: 6  GTVKWFNADKGYGFLTQD---NGGKDVFVHFRAIVSDGYKTLPEGQRVEFE 53


>gi|118595187|ref|ZP_01552534.1| Possible Cold-shock DNA-binding domain protein [Methylophilales
          bacterium HTCC2181]
 gi|118440965|gb|EAV47592.1| Possible Cold-shock DNA-binding domain protein [Methylophilales
          bacterium HTCC2181]
          Length = 68

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + GDD+F H SA+   G  +L EG  V+++ V +   GK
Sbjct: 4  GTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVDDGYKSLKEGARVSFE-VTDGPKGK 59

Query: 65 YSAENLK 71
            A N++
Sbjct: 60 -QASNIQ 65


>gi|148652425|ref|YP_001279518.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          sp. PRwf-1]
 gi|148571509|gb|ABQ93568.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1]
 gi|332977982|gb|EGK14726.1| cold shock protein CspA [Psychrobacter sp. 1501(2011)]
          Length = 71

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G++KW+N  KG+GFI  +   + G DVF H SA+  +G   L EGQ VT+
Sbjct: 6  QGTVKWFNEAKGFGFIAQD---DGGQDVFAHYSAIQGSGFKTLAEGQKVTF 53


>gi|108763346|ref|YP_634172.1| cold-shock protein CspE [Myxococcus xanthus DK 1622]
 gi|4193398|gb|AAD10037.1| CspE [Myxococcus xanthus]
 gi|108467226|gb|ABF92411.1| cold-shock protein CspE [Myxococcus xanthus DK 1622]
          Length = 68

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFIT +G    G+DVF H +A+   G   L EGQ V ++  +
Sbjct: 4  GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLAEGQKVEFEVTR 54


>gi|302877658|ref|YP_003846222.1| cold-shock DNA-binding domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302580447|gb|ADL54458.1| cold-shock DNA-binding domain protein [Gallionella
          capsiferriformans ES-2]
          Length = 67

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+TP+  +E   D+F H SA+   G   L EGQ V+++  Q
Sbjct: 4  GTVKWFNDAKGFGFVTPDDGSE---DLFAHFSAINMNGFKTLQEGQKVSFEVTQ 54


>gi|57239424|ref|YP_180560.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str.
          Welgevonden]
 gi|58579396|ref|YP_197608.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str.
          Welgevonden]
 gi|58617451|ref|YP_196650.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str.
          Gardel]
 gi|57161503|emb|CAH58429.1| hypothetical protein Erum6970 [Ehrlichia ruminantium str.
          Welgevonden]
 gi|58417063|emb|CAI28176.1| Putative Cold shock-like protein cspA [Ehrlichia ruminantium str.
          Gardel]
 gi|58418022|emb|CAI27226.1| Putative Cold shock-like protein cspA [Ehrlichia ruminantium str.
          Welgevonden]
          Length = 95

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 8/79 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGD------DVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G +KW++ +KGYGFI  +   +  +      D+F+H +A+  + +  L EGQ V Y 
Sbjct: 18 IYTGYVKWFSSEKGYGFIRKDHGDKVKNIGQDVKDIFVHITALQKSRISELKEGQKVKYQ 77

Query: 56 YVQNDANGKYSAENLKLVP 74
            +N  NGK+SA NL+++ 
Sbjct: 78 LDKN--NGKFSAINLEVLE 94


>gi|330467479|ref|YP_004405222.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
 gi|328810450|gb|AEB44622.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N DKG+GFI+ +   + G DVF H SA++++G  +L E Q V ++  Q
Sbjct: 4  GTVKWFNGDKGFGFISQD---DGGADVFAHFSAISASGFRSLDENQRVQFEITQ 54


>gi|294637324|ref|ZP_06715621.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
 gi|291089507|gb|EFE22068.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
          Length = 71

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          GS+KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +  V+N   G
Sbjct: 7  GSVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNEFRTLDEGQKVEFS-VENGPKG 61


>gi|163785451|ref|ZP_02180055.1| cold-shock domain family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879277|gb|EDP73177.1| cold-shock domain family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 76

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFIT +   ++  D+F+H SA+   G  NL EG+ V ++ VQ +
Sbjct: 13 GTVKWFNSKKGFGFITRD---DNQGDIFVHYSAIEGEGFKNLEEGEKVEFEVVQEE 65


>gi|163802491|ref|ZP_02196384.1| bifunctional GMP synthase/glutamine amidotransferase protein
          [Vibrio sp. AND4]
 gi|159173792|gb|EDP58607.1| bifunctional GMP synthase/glutamine amidotransferase protein
          [Vibrio sp. AND4]
          Length = 70

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N  KG+GF+T +     G DVF+H  A+ S G   L EGQ V++   Q
Sbjct: 7  GSVKWFNESKGFGFLTQD---NGGADVFVHFQAIVSEGFKTLVEGQKVSFSVEQ 57


>gi|74961778|sp|P91599|LIN28_CAERE RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage
           protein 28
 gi|1763346|gb|AAC47477.1| LIN-28 [Caenorhabditis remanei]
          Length = 214

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS KW+N  KGYGF+  + + E   D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 51  GSCKWFNVSKGYGFVIDDITRE---DLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 106


>gi|120554260|ref|YP_958611.1| cold-shock DNA-binding domain-containing protein [Marinobacter
          aquaeolei VT8]
 gi|120324109|gb|ABM18424.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei
          VT8]
          Length = 68

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFIT EG    G DVF+H SA+   G   L EGQ V +   Q     +
Sbjct: 6  GTVKFFNESKGFGFITREG----GPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKGPQ 61

Query: 65 YSAENL 70
            AEN+
Sbjct: 62 --AENV 65


>gi|325114942|emb|CBZ50498.1| cold-shock protein, DNA-binding, related [Neospora caninum
          Liverpool]
          Length = 125

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           + RG  KW++  KG+GFIT     E G D+F+H++ + + G  NL EG+ V +  VQ  
Sbjct: 4  QIQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEF-RVQVG 58

Query: 61 ANGKYSA 67
           +GK  A
Sbjct: 59 HDGKRKA 65


>gi|297735007|emb|CBI17369.3| unnamed protein product [Vitis vinifera]
          Length = 208

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G ++W++  KG+GFITP    E G+D+F+H+S++ S G  +L EG+ V +  V  + +G+
Sbjct: 8  GVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGE-DGR 63

Query: 65 YSAENL 70
            A ++
Sbjct: 64 TKAVDV 69


>gi|261251425|ref|ZP_05943999.1| cold shock protein CspE [Vibrio orientalis CIP 102891]
 gi|260938298|gb|EEX94286.1| cold shock protein CspE [Vibrio orientalis CIP 102891]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V  ++V       
Sbjct: 7  GTVKWFNETKGFGFI----QQENGPDVFAHFSAITGDGFRTLVEGQKV--EFVVTTGQKG 60

Query: 65 YSAENLKLV 73
            AEN+K++
Sbjct: 61 PQAENIKVL 69


>gi|227549517|ref|ZP_03979566.1| cold shock protein Csp [Corynebacterium lipophiloflavum DSM
          44291]
 gi|227078394|gb|EEI16357.1| cold shock protein Csp [Corynebacterium lipophiloflavum DSM
          44291]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 5/52 (9%)

Query: 4  RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G++KW+N DKG+GFI P +GST    DVF+H S +  +G  NL E Q V Y
Sbjct: 3  QGTVKWFNGDKGFGFIAPNDGST----DVFVHFSEIQGSGYRNLEENQQVEY 50


>gi|269955008|ref|YP_003324797.1| cold-shock DNA-binding domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303689|gb|ACZ29239.1| cold-shock DNA-binding domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 311

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 5/56 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++ WY P KGYGF+TP+G     D+VF+H SA+   G+  ++EGQ V +  V+ +
Sbjct: 81  GTVSWYEPAKGYGFVTPDGGR---DEVFVHSSAIVGGGV--ISEGQRVAFLVVEGE 131



 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++ WY+  KG+GF+ P+     G+DVF+H SA+   GL  L EG  VTYD V+ +
Sbjct: 158 GTVSWYDDTKGFGFVAPD---SGGEDVFVHVSALG-PGLTELFEGARVTYDVVEGE 209



 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++  Y+ ++G+GFITP+     G D+F+H S +   G  +L EG  V +   Q+D
Sbjct: 250 GTVARYDAERGFGFITPDA---GGADLFVHVSVLRGVG--DLAEGDRVRFKVRQSD 300



 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60
          +G+++W++ ++G+GFI      E   D+F+H S  V   G   L EGQ V ++  + D
Sbjct: 3  QGTVRWFDAERGFGFIDVGNEAE---DLFVHASEIVGDDGPRLLREGQAVEFEVGEGD 57


>gi|145592834|ref|YP_001157131.1| cold-shock DNA-binding domain-containing protein [Salinispora
          tropica CNB-440]
 gi|159035978|ref|YP_001535231.1| cold-shock DNA-binding domain-containing protein [Salinispora
          arenicola CNS-205]
 gi|238061348|ref|ZP_04606057.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|145302171|gb|ABP52753.1| cold-shock DNA-binding protein family [Salinispora tropica
          CNB-440]
 gi|157914813|gb|ABV96240.1| cold-shock DNA-binding domain protein [Salinispora arenicola
          CNS-205]
 gi|237883159|gb|EEP71987.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L +GQ V ++  Q     
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GQDVFVHFSAIEMDGYKALDDGQRVEFEIAQGQKGP 58

Query: 64 KYSAENLKLVP 74
          +  AE +++V 
Sbjct: 59 Q--AERVRVVA 67


>gi|90023468|ref|YP_529295.1| cold-shock DNA-binding protein family protein [Saccharophagus
          degradans 2-40]
 gi|89953068|gb|ABD83083.1| cold-shock DNA-binding protein family [Saccharophagus degradans
          2-40]
          Length = 86

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N DKG+GFITP    + G D+F+H S + A  G   L +GQ V ++  Q
Sbjct: 19 MSKGTVKWFNADKGFGFITP---ADGGKDLFVHHSEIQAGGGYATLNDGQEVEFEVGQ 73


>gi|17548223|ref|NP_521563.1| cold shock-like transcription regulator protein [Ralstonia
          solanacearum GMI1000]
 gi|300693045|ref|YP_003749018.1| cold shock DNA binding protein (transcription regulator)
          [Ralstonia solanacearum PSI07]
 gi|17430469|emb|CAD17153.1| probable cold shock-like transcription regulator protein
          [Ralstonia solanacearum GMI1000]
 gi|299068439|emb|CBJ39662.1| Cold shock DNA binding protein (transcription regulator)
          [Ralstonia solanacearum CMR15]
 gi|299075082|emb|CBJ34363.1| Cold shock DNA binding protein (transcription regulator)
          [Ralstonia solanacearum PSI07]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G++KW+N  KG+GFITP+G    G D+F H S +  +G   L +GQ V+++  Q 
Sbjct: 4  GTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQG 55


>gi|15800638|ref|NP_286652.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H7 EDL933]
 gi|15830220|ref|NP_308993.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H7 str. Sakai]
 gi|16128848|ref|NP_415401.1| inhibitor of DNA replication, cold shock protein homolog
          [Escherichia coli str. K-12 substr. MG1655]
 gi|24112256|ref|NP_706766.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella flexneri 2a str. 301]
 gi|30062368|ref|NP_836539.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella flexneri 2a str. 2457T]
 gi|74311425|ref|YP_309844.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella sonnei Ss046]
 gi|82543367|ref|YP_407314.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella boydii Sb227]
 gi|82777597|ref|YP_403946.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella dysenteriae Sd197]
 gi|89107731|ref|AP_001511.1| cold shock protein homolog [Escherichia coli str. K-12 substr.
          W3110]
 gi|110641081|ref|YP_668811.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli 536]
 gi|157156996|ref|YP_001462077.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli E24377A]
 gi|157160403|ref|YP_001457721.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli HS]
 gi|168752461|ref|ZP_02777483.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4113]
 gi|168758796|ref|ZP_02783803.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4401]
 gi|168765085|ref|ZP_02790092.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4501]
 gi|168769857|ref|ZP_02794864.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4486]
 gi|168772142|ref|ZP_02797149.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4486]
 gi|168777873|ref|ZP_02802880.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4196]
 gi|168783791|ref|ZP_02808798.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4076]
 gi|168789132|ref|ZP_02814139.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC869]
 gi|168802711|ref|ZP_02827718.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC508]
 gi|170020717|ref|YP_001725671.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli ATCC 8739]
 gi|170080539|ref|YP_001729859.1| cold shock protein-like protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|170683368|ref|YP_001744327.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli SMS-3-5]
 gi|170769169|ref|ZP_02903622.1| cold shock domain protein CspD [Escherichia albertii TW07627]
 gi|187731789|ref|YP_001880922.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella boydii CDC 3083-94]
 gi|188495418|ref|ZP_03002688.1| cold shock domain protein CspD [Escherichia coli 53638]
 gi|191167603|ref|ZP_03029414.1| cold shock domain protein CspD [Escherichia coli B7A]
 gi|191172141|ref|ZP_03033685.1| cold shock domain protein CspD [Escherichia coli F11]
 gi|193064669|ref|ZP_03045748.1| cold shock domain protein CspD [Escherichia coli E22]
 gi|193071761|ref|ZP_03052657.1| cold shock domain protein CspD [Escherichia coli E110019]
 gi|194428406|ref|ZP_03060947.1| cold shock domain protein CspD [Escherichia coli B171]
 gi|194433169|ref|ZP_03065451.1| cold shock domain protein CspD [Shigella dysenteriae 1012]
 gi|194438741|ref|ZP_03070828.1| cold shock domain protein CspD [Escherichia coli 101-1]
 gi|195939543|ref|ZP_03084925.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H7 str. EC4024]
 gi|208807912|ref|ZP_03250249.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4206]
 gi|208814789|ref|ZP_03255968.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4045]
 gi|208822048|ref|ZP_03262367.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4042]
 gi|209400231|ref|YP_002269554.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4115]
 gi|209918129|ref|YP_002292213.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli SE11]
 gi|215486011|ref|YP_002328442.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O127:H6 str. E2348/69]
 gi|217324268|ref|ZP_03440352.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          TW14588]
 gi|218553466|ref|YP_002386379.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli IAI1]
 gi|218557784|ref|YP_002390697.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli S88]
 gi|218688662|ref|YP_002396874.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli ED1a]
 gi|218694354|ref|YP_002402021.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli 55989]
 gi|218700605|ref|YP_002408234.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli IAI39]
 gi|218704309|ref|YP_002411828.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli UMN026]
 gi|227884154|ref|ZP_04001959.1| cold shock family protein CspD [Escherichia coli 83972]
 gi|238900139|ref|YP_002925935.1| cold shock protein-like protein [Escherichia coli BW2952]
 gi|253774090|ref|YP_003036921.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160995|ref|YP_003044103.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli B str. REL606]
 gi|254792081|ref|YP_003076918.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H7 str. TW14359]
 gi|256020999|ref|ZP_05434864.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella sp. D9]
 gi|256023493|ref|ZP_05437358.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia sp. 4_1_40B]
 gi|260843131|ref|YP_003220909.1| cold shock protein homolog CspD [Escherichia coli O103:H2 str.
          12009]
 gi|260854172|ref|YP_003228063.1| cold shock protein homolog CspD [Escherichia coli O26:H11 str.
          11368]
 gi|260867053|ref|YP_003233455.1| cold shock protein homolog CspD [Escherichia coli O111:H- str.
          11128]
 gi|261225536|ref|ZP_05939817.1| cold shock protein-like protein [Escherichia coli O157:H7 str.
          FRIK2000]
 gi|261258495|ref|ZP_05951028.1| hypothetical protein EscherichiacoliO157EcO_22126 [Escherichia
          coli O157:H7 str. FRIK966]
 gi|293404188|ref|ZP_06648182.1| cold shock-like protein cspD [Escherichia coli FVEC1412]
 gi|293409259|ref|ZP_06652835.1| cold shock domain-containing protein CspD [Escherichia coli B354]
 gi|297516223|ref|ZP_06934609.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli OP50]
 gi|298379969|ref|ZP_06989574.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli FVEC1302]
 gi|300817018|ref|ZP_07097237.1| cold shock domain protein CspD [Escherichia coli MS 107-1]
 gi|300823618|ref|ZP_07103745.1| cold shock domain protein CspD [Escherichia coli MS 119-7]
 gi|300895697|ref|ZP_07114293.1| cold shock domain protein CspD [Escherichia coli MS 198-1]
 gi|300902416|ref|ZP_07120398.1| cold shock domain protein CspD [Escherichia coli MS 84-1]
 gi|300921088|ref|ZP_07137472.1| cold shock domain protein CspD [Escherichia coli MS 115-1]
 gi|300922549|ref|ZP_07138650.1| cold shock domain protein CspD [Escherichia coli MS 182-1]
 gi|300928423|ref|ZP_07143956.1| cold shock domain protein CspD [Escherichia coli MS 187-1]
 gi|300935726|ref|ZP_07150694.1| cold shock domain protein CspD [Escherichia coli MS 21-1]
 gi|300950108|ref|ZP_07164054.1| cold shock domain protein CspD [Escherichia coli MS 116-1]
 gi|300954452|ref|ZP_07166904.1| cold shock domain protein CspD [Escherichia coli MS 175-1]
 gi|300978556|ref|ZP_07174309.1| cold shock domain protein CspD [Escherichia coli MS 45-1]
 gi|300991781|ref|ZP_07179644.1| cold shock domain protein CspD [Escherichia coli MS 200-1]
 gi|301020524|ref|ZP_07184608.1| cold shock domain protein CspD [Escherichia coli MS 69-1]
 gi|301024393|ref|ZP_07188080.1| cold shock domain protein CspD [Escherichia coli MS 196-1]
 gi|301051190|ref|ZP_07198020.1| cold shock domain protein CspD [Escherichia coli MS 185-1]
 gi|301305346|ref|ZP_07211441.1| cold shock domain protein CspD [Escherichia coli MS 124-1]
 gi|301328606|ref|ZP_07221667.1| cold shock domain protein CspD [Escherichia coli MS 78-1]
 gi|301646324|ref|ZP_07246212.1| cold shock domain protein CspD [Escherichia coli MS 146-1]
 gi|306812670|ref|ZP_07446863.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli NC101]
 gi|307137508|ref|ZP_07496864.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli H736]
 gi|307311732|ref|ZP_07591372.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|309783998|ref|ZP_07678642.1| cold shock domain protein CspD [Shigella dysenteriae 1617]
 gi|309795323|ref|ZP_07689741.1| cold shock domain protein CspD [Escherichia coli MS 145-7]
 gi|312969051|ref|ZP_07783258.1| cold shock domain protein CspD [Escherichia coli 2362-75]
 gi|312971007|ref|ZP_07785186.1| cold shock domain protein CspD [Escherichia coli 1827-70]
 gi|331641401|ref|ZP_08342536.1| cold shock domain protein CspD [Escherichia coli H736]
 gi|331646148|ref|ZP_08347251.1| cold shock domain protein CspD [Escherichia coli M605]
 gi|331651899|ref|ZP_08352918.1| cold shock domain protein CspD [Escherichia coli M718]
 gi|331656952|ref|ZP_08357914.1| cold shock domain protein CspD [Escherichia coli TA206]
 gi|331662294|ref|ZP_08363217.1| cold shock domain protein CspD [Escherichia coli TA143]
 gi|331667254|ref|ZP_08368119.1| cold shock domain protein CspD [Escherichia coli TA271]
 gi|331672417|ref|ZP_08373208.1| cold shock domain protein CspD [Escherichia coli TA280]
 gi|331676668|ref|ZP_08377364.1| cold shock domain protein CspD [Escherichia coli H591]
 gi|331682389|ref|ZP_08383008.1| cold shock domain protein CspD [Escherichia coli H299]
 gi|71154152|sp|P0A970|CSPD_ECO57 RecName: Full=Cold shock-like protein CspD; Short=CSP-D
 gi|71154153|sp|P0A969|CSPD_ECOL6 RecName: Full=Cold shock-like protein CspD; Short=CSP-D
 gi|71154154|sp|P0A968|CSPD_ECOLI RecName: Full=Cold shock-like protein CspD; Short=CSP-D
 gi|71154155|sp|P0A971|CSPD_SHIFL RecName: Full=Cold shock-like protein CspD; Short=CSP-D
 gi|12513910|gb|AAG55262.1|AE005269_6 cold shock protein [Escherichia coli O157:H7 str. EDL933]
 gi|1651400|dbj|BAA35599.1| cold shock protein homolog [Escherichia coli str. K12 substr.
          W3110]
 gi|1787107|gb|AAC73967.1| inhibitor of DNA replication, cold shock protein homolog
          [Escherichia coli str. K-12 substr. MG1655]
 gi|13360425|dbj|BAB34389.1| cold shock protein [Escherichia coli O157:H7 str. Sakai]
 gi|24051106|gb|AAN42473.1| cold shock protein [Shigella flexneri 2a str. 301]
 gi|30040613|gb|AAP16345.1| cold shock protein [Shigella flexneri 2a str. 2457T]
 gi|73854902|gb|AAZ87609.1| cold shock protein [Shigella sonnei Ss046]
 gi|81241745|gb|ABB62455.1| cold shock protein [Shigella dysenteriae Sd197]
 gi|81244778|gb|ABB65486.1| cold shock protein [Shigella boydii Sb227]
 gi|110342673|gb|ABG68910.1| cold shock-like protein CspD [Escherichia coli 536]
 gi|157066083|gb|ABV05338.1| cold shock domain protein CspD [Escherichia coli HS]
 gi|157079026|gb|ABV18734.1| cold shock domain protein CspD [Escherichia coli E24377A]
 gi|169755645|gb|ACA78344.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|169888374|gb|ACB02081.1| cold shock protein-like protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|170121821|gb|EDS90752.1| cold shock domain protein CspD [Escherichia albertii TW07627]
 gi|170521086|gb|ACB19264.1| cold shock domain protein CspD [Escherichia coli SMS-3-5]
 gi|187428781|gb|ACD08055.1| cold shock domain protein CspD [Shigella boydii CDC 3083-94]
 gi|187766991|gb|EDU30835.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4196]
 gi|188013698|gb|EDU51820.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4113]
 gi|188490617|gb|EDU65720.1| cold shock domain protein CspD [Escherichia coli 53638]
 gi|188998900|gb|EDU67886.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4076]
 gi|189354451|gb|EDU72870.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4401]
 gi|189359394|gb|EDU77813.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4486]
 gi|189361135|gb|EDU79554.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4486]
 gi|189365045|gb|EDU83461.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4501]
 gi|189371144|gb|EDU89560.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC869]
 gi|189375363|gb|EDU93779.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC508]
 gi|190902364|gb|EDV62102.1| cold shock domain protein CspD [Escherichia coli B7A]
 gi|190907668|gb|EDV67263.1| cold shock domain protein CspD [Escherichia coli F11]
 gi|192927726|gb|EDV82341.1| cold shock domain protein CspD [Escherichia coli E22]
 gi|192954918|gb|EDV85425.1| cold shock domain protein CspD [Escherichia coli E110019]
 gi|194413621|gb|EDX29902.1| cold shock domain protein CspD [Escherichia coli B171]
 gi|194418666|gb|EDX34753.1| cold shock domain protein CspD [Shigella dysenteriae 1012]
 gi|194422373|gb|EDX38373.1| cold shock domain protein CspD [Escherichia coli 101-1]
 gi|208727713|gb|EDZ77314.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4206]
 gi|208731437|gb|EDZ80125.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4045]
 gi|208737533|gb|EDZ85216.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4042]
 gi|209161631|gb|ACI39064.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4115]
 gi|209911388|dbj|BAG76462.1| cold shock-like protein [Escherichia coli SE11]
 gi|215264083|emb|CAS08425.1| cold shock protein homolog [Escherichia coli O127:H6 str.
          E2348/69]
 gi|217320489|gb|EEC28913.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          TW14588]
 gi|218351086|emb|CAU96790.1| cold shock protein homolog [Escherichia coli 55989]
 gi|218360234|emb|CAQ97784.1| cold shock protein homolog [Escherichia coli IAI1]
 gi|218364553|emb|CAR02237.1| cold shock protein homolog [Escherichia coli S88]
 gi|218370591|emb|CAR18398.1| cold shock protein homolog [Escherichia coli IAI39]
 gi|218426226|emb|CAR07051.1| cold shock protein homolog [Escherichia coli ED1a]
 gi|218431406|emb|CAR12284.1| cold shock protein homolog [Escherichia coli UMN026]
 gi|227838906|gb|EEJ49372.1| cold shock family protein CspD [Escherichia coli 83972]
 gi|238860165|gb|ACR62163.1| cold shock protein-like protein [Escherichia coli BW2952]
 gi|242376695|emb|CAQ31408.1| DNA replication inhibitor [Escherichia coli BL21(DE3)]
 gi|253325134|gb|ACT29736.1| cold-shock DNA-binding domain protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253972896|gb|ACT38567.1| cold shock protein-like protein [Escherichia coli B str. REL606]
 gi|253977110|gb|ACT42780.1| cold shock protein-like protein [Escherichia coli BL21(DE3)]
 gi|254591481|gb|ACT70842.1| cold shock protein-like protein [Escherichia coli O157:H7 str.
          TW14359]
 gi|257752821|dbj|BAI24323.1| cold shock protein homolog CspD [Escherichia coli O26:H11 str.
          11368]
 gi|257758278|dbj|BAI29775.1| cold shock protein homolog CspD [Escherichia coli O103:H2 str.
          12009]
 gi|257763409|dbj|BAI34904.1| cold shock protein homolog CspD [Escherichia coli O111:H- str.
          11128]
 gi|260449973|gb|ACX40395.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|281178015|dbj|BAI54345.1| cold shock-like protein [Escherichia coli SE15]
 gi|284920734|emb|CBG33797.1| cold shock-like protein CspD [Escherichia coli 042]
 gi|291428774|gb|EFF01799.1| cold shock-like protein cspD [Escherichia coli FVEC1412]
 gi|291469727|gb|EFF12211.1| cold shock domain-containing protein CspD [Escherichia coli B354]
 gi|294490756|gb|ADE89512.1| cold shock domain protein CspD [Escherichia coli IHE3034]
 gi|298279667|gb|EFI21175.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli FVEC1302]
 gi|299880400|gb|EFI88611.1| cold shock domain protein CspD [Escherichia coli MS 196-1]
 gi|300297211|gb|EFJ53596.1| cold shock domain protein CspD [Escherichia coli MS 185-1]
 gi|300305535|gb|EFJ60055.1| cold shock domain protein CspD [Escherichia coli MS 200-1]
 gi|300318602|gb|EFJ68386.1| cold shock domain protein CspD [Escherichia coli MS 175-1]
 gi|300360366|gb|EFJ76236.1| cold shock domain protein CspD [Escherichia coli MS 198-1]
 gi|300398657|gb|EFJ82195.1| cold shock domain protein CspD [Escherichia coli MS 69-1]
 gi|300405448|gb|EFJ88986.1| cold shock domain protein CspD [Escherichia coli MS 84-1]
 gi|300409635|gb|EFJ93173.1| cold shock domain protein CspD [Escherichia coli MS 45-1]
 gi|300411939|gb|EFJ95249.1| cold shock domain protein CspD [Escherichia coli MS 115-1]
 gi|300421095|gb|EFK04406.1| cold shock domain protein CspD [Escherichia coli MS 182-1]
 gi|300450523|gb|EFK14143.1| cold shock domain protein CspD [Escherichia coli MS 116-1]
 gi|300459089|gb|EFK22582.1| cold shock domain protein CspD [Escherichia coli MS 21-1]
 gi|300463586|gb|EFK27079.1| cold shock domain protein CspD [Escherichia coli MS 187-1]
 gi|300523818|gb|EFK44887.1| cold shock domain protein CspD [Escherichia coli MS 119-7]
 gi|300530370|gb|EFK51432.1| cold shock domain protein CspD [Escherichia coli MS 107-1]
 gi|300839364|gb|EFK67124.1| cold shock domain protein CspD [Escherichia coli MS 124-1]
 gi|300844998|gb|EFK72758.1| cold shock domain protein CspD [Escherichia coli MS 78-1]
 gi|301075427|gb|EFK90233.1| cold shock domain protein CspD [Escherichia coli MS 146-1]
 gi|305853433|gb|EFM53872.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli NC101]
 gi|306908287|gb|EFN38786.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|307552723|gb|ADN45498.1| cold shock-like protein CspD [Escherichia coli ABU 83972]
 gi|307627710|gb|ADN72014.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli UM146]
 gi|308120973|gb|EFO58235.1| cold shock domain protein CspD [Escherichia coli MS 145-7]
 gi|308928141|gb|EFP73604.1| cold shock domain protein CspD [Shigella dysenteriae 1617]
 gi|310336768|gb|EFQ01935.1| cold shock domain protein CspD [Escherichia coli 1827-70]
 gi|312286453|gb|EFR14366.1| cold shock domain protein CspD [Escherichia coli 2362-75]
 gi|312945398|gb|ADR26225.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O83:H1 str. NRG 857C]
 gi|313650207|gb|EFS14619.1| cold shock domain protein CspD [Shigella flexneri 2a str. 2457T]
 gi|315060166|gb|ADT74493.1| cold shock protein-like protein [Escherichia coli W]
 gi|315135529|dbj|BAJ42688.1| cold shock protein [Escherichia coli DH1]
 gi|315257918|gb|EFU37886.1| cold shock domain protein CspD [Escherichia coli MS 85-1]
 gi|315287286|gb|EFU46697.1| cold shock domain protein CspD [Escherichia coli MS 110-3]
 gi|315291074|gb|EFU50437.1| cold shock domain protein CspD [Escherichia coli MS 153-1]
 gi|315296656|gb|EFU55951.1| cold shock domain protein CspD [Escherichia coli MS 16-3]
 gi|315619192|gb|EFU99771.1| cold shock domain protein CspD [Escherichia coli 3431]
 gi|320175321|gb|EFW50427.1| Cold shock protein CspD [Shigella dysenteriae CDC 74-1112]
 gi|320180598|gb|EFW55527.1| Cold shock protein CspD [Shigella boydii ATCC 9905]
 gi|320183181|gb|EFW58039.1| Cold shock protein CspD [Shigella flexneri CDC 796-83]
 gi|320192634|gb|EFW67275.1| Cold shock protein CspD [Escherichia coli O157:H7 str. EC1212]
 gi|320196625|gb|EFW71248.1| Cold shock protein CspD [Escherichia coli WV_060327]
 gi|320202275|gb|EFW76846.1| Cold shock protein CspD [Escherichia coli EC4100B]
 gi|320637751|gb|EFX07543.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H7 str. G5101]
 gi|320642874|gb|EFX12075.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H- str. 493-89]
 gi|320648331|gb|EFX16986.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H- str. H 2687]
 gi|320654169|gb|EFX22237.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320659793|gb|EFX27349.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664263|gb|EFX31414.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H7 str. LSU-61]
 gi|323155746|gb|EFZ41915.1| cold shock domain protein CspD [Escherichia coli EPECa14]
 gi|323159505|gb|EFZ45485.1| cold shock domain protein CspD [Escherichia coli E128010]
 gi|323165817|gb|EFZ51603.1| cold shock domain protein CspD [Shigella sonnei 53G]
 gi|323172149|gb|EFZ57787.1| cold shock domain protein CspD [Escherichia coli LT-68]
 gi|323175498|gb|EFZ61093.1| cold shock domain protein CspD [Escherichia coli 1180]
 gi|323185155|gb|EFZ70520.1| cold shock domain protein CspD [Escherichia coli 1357]
 gi|323190702|gb|EFZ75971.1| cold shock domain protein CspD [Escherichia coli RN587/1]
 gi|323379277|gb|ADX51545.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323942797|gb|EGB38962.1| cold shock domain-containing protein CspD [Escherichia coli E482]
 gi|323947162|gb|EGB43172.1| cold shock domain-containing protein CspD [Escherichia coli H120]
 gi|323953416|gb|EGB49282.1| cold shock domain-containing protein CspD [Escherichia coli H252]
 gi|323958169|gb|EGB53878.1| cold shock domain-containing protein CspD [Escherichia coli H263]
 gi|323962993|gb|EGB58565.1| cold shock domain-containing protein CspD [Escherichia coli H489]
 gi|323967316|gb|EGB62739.1| cold shock domain-containing protein CspD [Escherichia coli M863]
 gi|323969635|gb|EGB64922.1| cold shock domain-containing protein CspD [Escherichia coli
          TA007]
 gi|323976733|gb|EGB71821.1| cold shock domain-containing protein CspD [Escherichia coli
          TW10509]
 gi|324009834|gb|EGB79053.1| cold shock domain protein CspD [Escherichia coli MS 57-2]
 gi|324012987|gb|EGB82206.1| cold shock domain protein CspD [Escherichia coli MS 60-1]
 gi|324019030|gb|EGB88249.1| cold shock domain protein CspD [Escherichia coli MS 117-3]
 gi|324116094|gb|EGC10018.1| cold shock domain-containing protein CspD [Escherichia coli
          E1167]
 gi|326346202|gb|EGD69940.1| Cold shock protein CspD [Escherichia coli O157:H7 str. 1044]
 gi|327253668|gb|EGE65297.1| cold shock domain protein CspD [Escherichia coli STEC_7v]
 gi|330910662|gb|EGH39172.1| cold shock protein CspD [Escherichia coli AA86]
 gi|331038199|gb|EGI10419.1| cold shock domain protein CspD [Escherichia coli H736]
 gi|331044900|gb|EGI17027.1| cold shock domain protein CspD [Escherichia coli M605]
 gi|331050177|gb|EGI22235.1| cold shock domain protein CspD [Escherichia coli M718]
 gi|331055200|gb|EGI27209.1| cold shock domain protein CspD [Escherichia coli TA206]
 gi|331060716|gb|EGI32680.1| cold shock domain protein CspD [Escherichia coli TA143]
 gi|331065610|gb|EGI37503.1| cold shock domain protein CspD [Escherichia coli TA271]
 gi|331070612|gb|EGI41976.1| cold shock domain protein CspD [Escherichia coli TA280]
 gi|331075357|gb|EGI46655.1| cold shock domain protein CspD [Escherichia coli H591]
 gi|331080020|gb|EGI51199.1| cold shock domain protein CspD [Escherichia coli H299]
 gi|332088860|gb|EGI93972.1| cold shock domain protein CspD [Shigella boydii 5216-82]
 gi|332091104|gb|EGI96194.1| cold shock domain protein CspD [Shigella dysenteriae 155-74]
 gi|332097053|gb|EGJ02036.1| cold shock domain protein CspD [Shigella boydii 3594-74]
 gi|332342268|gb|AEE55602.1| cold shock domain protein CspD [Escherichia coli UMNK88]
 gi|332759795|gb|EGJ90098.1| cold shock domain protein CspD [Shigella flexneri 4343-70]
 gi|332760573|gb|EGJ90862.1| cold shock domain protein CspD [Shigella flexneri 2747-71]
 gi|332762936|gb|EGJ93186.1| cold shock domain protein CspD [Shigella flexneri K-671]
 gi|332768058|gb|EGJ98244.1| cold shock domain protein CspD [Shigella flexneri 2930-71]
 gi|333006683|gb|EGK26182.1| cold shock domain protein CspD [Shigella flexneri VA-6]
 gi|333006920|gb|EGK26415.1| cold shock domain protein CspD [Shigella flexneri K-218]
 gi|333008808|gb|EGK28268.1| cold shock domain protein CspD [Shigella flexneri K-272]
 gi|333020115|gb|EGK39385.1| cold shock domain protein CspD [Shigella flexneri K-227]
 gi|333021002|gb|EGK40260.1| cold shock domain protein CspD [Shigella flexneri K-304]
          Length = 74

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 1  MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQ 54


>gi|331014236|gb|EGH94292.1| cold shock protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 41

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 4/45 (8%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          KW+N +KG+GFITP    +SGDD+F+H  A+ S G  +L EGQ V
Sbjct: 1  KWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQV 41


>gi|225390644|ref|ZP_03760368.1| hypothetical protein CLOSTASPAR_04399 [Clostridium asparagiforme
          DSM 15981]
 gi|225043262|gb|EEG53508.1| hypothetical protein CLOSTASPAR_04399 [Clostridium asparagiforme
          DSM 15981]
          Length = 65

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI    S E G+DVF+H S +   G  +L EG  V +D V N A G
Sbjct: 2  KGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLDEGAAVEFDVV-NGAKG 56

Query: 64 KYSAENLKL 72
            +    KL
Sbjct: 57 PQATNVTKL 65


>gi|170690994|ref|ZP_02882160.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
 gi|307726662|ref|YP_003909875.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1003]
 gi|323529135|ref|YP_004231287.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1001]
 gi|170144243|gb|EDT12405.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
 gi|307587187|gb|ADN60584.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
 gi|323386137|gb|ADX58227.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G+D+F H S V  +G  +L E Q V+++ V+    GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEVQGSGFKSLQENQKVSFE-VKQGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|160901501|ref|YP_001567082.1| cold-shock DNA-binding domain-containing protein [Petrotoga
          mobilis SJ95]
 gi|160359145|gb|ABX30759.1| cold-shock DNA-binding domain protein [Petrotoga mobilis SJ95]
          Length = 65

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +KW++  KGYGFIT     E G+DVF+H SAV   G   L E Q V ++ V+ D
Sbjct: 2  KGKVKWFDSKKGYGFIT----GEDGNDVFVHFSAVQMDGYRKLEEDQEVEFEVVEGD 54


>gi|149196184|ref|ZP_01873239.1| stress protein, member of the CspA-family [Lentisphaera araneosa
          HTCC2155]
 gi|149140445|gb|EDM28843.1| stress protein, member of the CspA-family [Lentisphaera araneosa
          HTCC2155]
          Length = 68

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G +KW+N  KG+GFI  +G    G DVF+H SA+   G   L EGQ V +D
Sbjct: 5  QGRVKWFNETKGFGFIEQDG----GKDVFVHFSAIQGQGFKTLEEGQKVEFD 52


>gi|90410344|ref|ZP_01218360.1| Putative cold shock-like protein cspG [Photobacterium profundum
          3TCK]
 gi|90328585|gb|EAS44869.1| Putative cold shock-like protein cspG [Photobacterium profundum
          3TCK]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ V+Y+  Q
Sbjct: 6  GTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLAEGQKVSYETEQ 56


>gi|153950481|ref|YP_001399368.1| cold shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|152961976|gb|ABS49437.1| cold shock DNA-binding domain protein [Yersinia
          pseudotuberculosis IP 31758]
          Length = 70

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFITP    +   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 SAVNVIAL 70


>gi|330813537|ref|YP_004357776.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
          sp. IMCC9063]
 gi|327486632|gb|AEA81037.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
          sp. IMCC9063]
          Length = 68

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N  KG+GFI  E   +   DVF+H SAV +AGL  L EG  + +D V++ 
Sbjct: 1  MSLKGKVKWFNEKKGFGFIEREDGKK---DVFVHISAVQAAGLDYLDEGSSINFD-VEDG 56

Query: 61 ANGKYSAENLK 71
            G  SA NLK
Sbjct: 57 PKGP-SAVNLK 66


>gi|307825191|ref|ZP_07655411.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307733647|gb|EFO04504.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 70

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      E G DVF+H S ++S G  +LT+GQ V ++  Q
Sbjct: 8  GTVKWFNASKGFGFI----EQEKGPDVFVHYSNISSTGFKSLTDGQKVKFNVSQ 57


>gi|254429192|ref|ZP_05042899.1| 'Cold-shock' DNA-binding domain protein [Alcanivorax sp. DG881]
 gi|196195361|gb|EDX90320.1| 'Cold-shock' DNA-binding domain protein [Alcanivorax sp. DG881]
          Length = 202

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
            RG +KW+NP+KG+GFI     T+SG+++F+H  AV + G  +L  G  V +D   +D
Sbjct: 137 QRGEVKWFNPNKGFGFIL----TDSGEELFVHFKAVQNGGRRSLRTGTKVRFDTRMSD 190


>gi|158523075|ref|YP_001530945.1| cold-shock DNA-binding domain-containing protein [Desulfococcus
          oleovorans Hxd3]
 gi|158511901|gb|ABW68868.1| cold-shock DNA-binding domain protein [Desulfococcus oleovorans
          Hxd3]
          Length = 66

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      ++G DVF+H SA+ ++G   L EG  VT+D V  D    
Sbjct: 4  GIVKWFNDSKGFGFI----EQDNGPDVFVHHSAINASGFKTLNEGDRVTFDIV--DGKKG 57

Query: 65 YSAENLKLV 73
           +A N+ +V
Sbjct: 58 PAAANVTVV 66


>gi|29830475|ref|NP_825109.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29607587|dbj|BAC71644.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 68

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L EGQ V ++  Q
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVDFEISQ 53


>gi|317493995|ref|ZP_07952411.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917768|gb|EFV39111.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 70

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI+P    +   DVF+H SA+ S    +L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSDSYKSLDEGQSVEFT-IENGAKGP 62

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 63 AAANVVAL 70


>gi|70731246|ref|YP_260987.1| cold shock domain-containing protein CspD [Pseudomonas
          fluorescens Pf-5]
 gi|68345545|gb|AAY93151.1| cold shock domain protein CspD [Pseudomonas fluorescens Pf-5]
          Length = 85

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  EG T   DD+F H SA+   G   L  GQ V+++ +Q
Sbjct: 4  GKVKWFNNAKGYGFINEEGKT---DDLFAHYSAIDMDGYKTLKAGQAVSFEIIQ 54


>gi|54309148|ref|YP_130168.1| putative cold shock-like protein cspG [Photobacterium profundum
          SS9]
 gi|46913580|emb|CAG20366.1| Putative cold shock-like protein cspG [Photobacterium profundum
          SS9]
          Length = 82

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ V+Y+  Q
Sbjct: 19 GTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLAEGQKVSYETEQ 69


>gi|228919954|ref|ZP_04083308.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228938352|ref|ZP_04100963.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228971230|ref|ZP_04131859.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228977839|ref|ZP_04138221.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|228781857|gb|EEM30053.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|228788465|gb|EEM36415.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228821298|gb|EEM67312.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228839667|gb|EEM84954.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|326938860|gb|AEA14756.1| cold shock protein [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G    G+DVF+H SA+ + G  +L EGQ V+++    D
Sbjct: 1  MAVTGQVKWFNNEKGFGFIEVPG----GNDVFVHFSAIETDGFKSLEEGQKVSFEI--ED 54

Query: 61 ANGKYSAENL 70
           N    A+N+
Sbjct: 55 GNRGPQAKNV 64


>gi|90019067|gb|ABD84187.1| unknown [Yersinia sp. MH-1]
          Length = 77

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFITP    + G DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 14 GLVKWFDAGKGFGFITP---ADGGKDVFVHFSAIQSNDFKTLDEGQRVEFS-IENGAKGP 69

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 70 SAANVVAL 77


>gi|18398546|ref|NP_565427.1| cold-shock DNA-binding family protein [Arabidopsis thaliana]
 gi|14334920|gb|AAK59638.1| putative glycine-rich, zinc-finger DNA-binding protein
          [Arabidopsis thaliana]
 gi|17104541|gb|AAL34159.1| putative glycine-rich, zinc-finger DNA-binding protein
          [Arabidopsis thaliana]
 gi|148726892|dbj|BAF63841.1| cold shock domain protein 3 [Arabidopsis thaliana]
 gi|330251603|gb|AEC06697.1| cold shock domain protein 3 [Arabidopsis thaliana]
          Length = 301

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G + W++  KGYGFITP+   + G+++F+H+S++ S G  +LT G+ V Y+ +   ++GK
Sbjct: 13 GKVSWFSDGKGYGFITPD---DGGEELFVHQSSIVSDGFRSLTLGESVEYE-IALGSDGK 68

Query: 65 YSA 67
            A
Sbjct: 69 TKA 71


>gi|283785560|ref|YP_003365425.1| cold shock-like protein CspC [Citrobacter rodentium ICC168]
 gi|282949014|emb|CBG88617.1| cold shock-like protein CspC [Citrobacter rodentium ICC168]
          Length = 71

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 7  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 62


>gi|223986942|ref|ZP_03636915.1| hypothetical protein HOLDEFILI_04238 [Holdemania filiformis DSM
          12042]
 gi|223961089|gb|EEF65628.1| hypothetical protein HOLDEFILI_04238 [Holdemania filiformis DSM
          12042]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          G +KW+N DKGYGFIT +   +   D+F+H S +   G  +L EGQ V+++ V+NDA
Sbjct: 4  GKVKWFNGDKGYGFITDD---QGQGDIFVHFSGINGNGYKSLEEGQKVSFE-VENDA 56


>gi|126642302|ref|YP_001085286.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978]
 gi|169633000|ref|YP_001706736.1| putative cold shock protein [Acinetobacter baumannii SDF]
 gi|169795349|ref|YP_001713142.1| putative cold shock protein [Acinetobacter baumannii AYE]
 gi|184158782|ref|YP_001847121.1| cold shock protein [Acinetobacter baumannii ACICU]
 gi|213158664|ref|YP_002319962.1| cold-shock domain protein [Acinetobacter baumannii AB0057]
 gi|215482883|ref|YP_002325086.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
 gi|226952983|ref|ZP_03823447.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|239502878|ref|ZP_04662188.1| Cold shock-like protein cspG [Acinetobacter baumannii AB900]
 gi|260550926|ref|ZP_05825132.1| cold-shock domain-containing protein [Acinetobacter sp. RUH2624]
 gi|260554463|ref|ZP_05826684.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
 gi|262278446|ref|ZP_06056231.1| cold shock domain-containing protein CspD [Acinetobacter
          calcoaceticus RUH2202]
 gi|293609548|ref|ZP_06691850.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|294650565|ref|ZP_06727922.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC
          19194]
 gi|299769391|ref|YP_003731417.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
 gi|301348039|ref|ZP_07228780.1| Cold shock-like protein cspG [Acinetobacter baumannii AB056]
 gi|301510877|ref|ZP_07236114.1| Cold shock-like protein cspG [Acinetobacter baumannii AB058]
 gi|301596796|ref|ZP_07241804.1| Cold shock-like protein cspG [Acinetobacter baumannii AB059]
 gi|332850461|ref|ZP_08432781.1| cold shock-like protein CspG [Acinetobacter baumannii 6013150]
 gi|332871913|ref|ZP_08440325.1| cold shock-like protein CspG [Acinetobacter baumannii 6013113]
 gi|332875151|ref|ZP_08442984.1| cold shock-like protein CspG [Acinetobacter baumannii 6014059]
 gi|126388186|gb|ABO12684.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978]
 gi|169148276|emb|CAM86141.1| putative cold shock protein [Acinetobacter baumannii AYE]
 gi|169151792|emb|CAP00613.1| putative cold shock protein [Acinetobacter baumannii]
 gi|183210376|gb|ACC57774.1| Cold shock protein [Acinetobacter baumannii ACICU]
 gi|213057824|gb|ACJ42726.1| cold-shock domain protein [Acinetobacter baumannii AB0057]
 gi|213988402|gb|ACJ58701.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
 gi|226836304|gb|EEH68687.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|260406053|gb|EEW99539.1| cold-shock domain-containing protein [Acinetobacter sp. RUH2624]
 gi|260411005|gb|EEX04302.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
 gi|262258797|gb|EEY77530.1| cold shock domain-containing protein CspD [Acinetobacter
          calcoaceticus RUH2202]
 gi|292823562|gb|EFF82408.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC
          19194]
 gi|292828000|gb|EFF86363.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298699479|gb|ADI90044.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
 gi|322507405|gb|ADX02859.1| cold shock protein [Acinetobacter baumannii 1656-2]
 gi|323518697|gb|ADX93078.1| cold shock protein [Acinetobacter baumannii TCDC-AB0715]
 gi|325122817|gb|ADY82340.1| putative cold shock protein [Acinetobacter calcoaceticus PHEA-2]
 gi|332730732|gb|EGJ62043.1| cold shock-like protein CspG [Acinetobacter baumannii 6013150]
 gi|332731127|gb|EGJ62428.1| cold shock-like protein CspG [Acinetobacter baumannii 6013113]
 gi|332736595|gb|EGJ67589.1| cold shock-like protein CspG [Acinetobacter baumannii 6014059]
          Length = 70

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI   G    GDDVF+H  A+   G  +L +GQ V +  VQ     
Sbjct: 6  QGVVKWFNDTKGFGFIQRNG----GDDVFVHFRAIVGDGHRSLRDGQRVEFSVVQGQKG- 60

Query: 64 KYSAENLK 71
           + AEN++
Sbjct: 61 -FQAENVQ 67


>gi|187925980|ref|YP_001892325.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
 gi|241665465|ref|YP_002983824.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
 gi|187727734|gb|ACD28898.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
 gi|240867492|gb|ACS65152.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G++KW+N  KG+GFITP+G    G D+F H S +  +G   L +GQ V+++  Q 
Sbjct: 4  GTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQG 55


>gi|28901144|ref|NP_800799.1| cold shock transcriptional regulator CspA [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|153838855|ref|ZP_01991522.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus
          AQ3810]
 gi|260362706|ref|ZP_05775575.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          K5030]
 gi|260879992|ref|ZP_05892347.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AN-5034]
 gi|260894667|ref|ZP_05903163.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          Peru-466]
 gi|260900524|ref|ZP_05908919.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AQ4037]
 gi|28809657|dbj|BAC62632.1| cold shock transcriptional regulator CspA [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|149747683|gb|EDM58593.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus
          AQ3810]
 gi|308086443|gb|EFO36138.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          Peru-466]
 gi|308091849|gb|EFO41544.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AN-5034]
 gi|308107098|gb|EFO44638.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AQ4037]
 gi|308112226|gb|EFO49766.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          K5030]
 gi|328471023|gb|EGF41934.1| cold shock transcriptional regulator CspA [Vibrio
          parahaemolyticus 10329]
          Length = 70

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GF++ +     G DVF+H +A+ + G   LTEGQ V+++  Q    GK
Sbjct: 7  GSVKWFNETKGFGFLSQD---NGGQDVFVHFNAIVADGFKTLTEGQKVSFNVEQ----GK 59

Query: 65 YSAENLKLVP 74
             +  ++ P
Sbjct: 60 KGPQATEVTP 69


>gi|295397227|ref|ZP_06807326.1| cold shock protein CspA [Aerococcus viridans ATCC 11563]
 gi|294974536|gb|EFG50264.1| cold shock protein CspA [Aerococcus viridans ATCC 11563]
          Length = 66

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G +KW+N +KG+GFI   G+    DDVF+H +A+   G  +L EGQ V+++
Sbjct: 1  MEQGKVKWFNAEKGFGFIERSGA----DDVFVHFTAIQGDGFKSLEEGQEVSFE 50


>gi|331002349|ref|ZP_08325867.1| cold shock-like protein cspLB [Lachnospiraceae oral taxon 107
          str. F0167]
 gi|330410165|gb|EGG89599.1| cold shock-like protein cspLB [Lachnospiraceae oral taxon 107
          str. F0167]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++RG++KW+N  KGYGFI+ EG    G DVF+H S +   G   L EG  V YD  +
Sbjct: 1  MNRGTVKWFNNQKGYGFISDEG----GSDVFVHFSDLNMEGFKTLDEGISVEYDLTE 53


>gi|149195695|ref|ZP_01872752.1| putative cold-shock DNA-binding domain protein [Lentisphaera
          araneosa HTCC2155]
 gi|149141157|gb|EDM29553.1| putative cold-shock DNA-binding domain protein [Lentisphaera
          araneosa HTCC2155]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 5/58 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+  DKG+GFITP     SGD D+F+H + + + G  +L EGQ V Y+  Q
Sbjct: 1  METGTVKWFADDKGFGFITP----NSGDKDLFVHHTEIQTGGFKSLAEGQKVEYEVGQ 54


>gi|157369958|ref|YP_001477947.1| cold-shock DNA-binding domain-containing protein [Serratia
          proteamaculans 568]
 gi|238753509|ref|ZP_04614872.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473]
 gi|157321722|gb|ABV40819.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
 gi|238708462|gb|EEQ00817.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y  V++   G 
Sbjct: 6  GQVKWFNESKGFGFIE---QNDGGKDVFVHFSAIATDGFKTLAEGQRVEYT-VEDSPRGP 61

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 62 AAANVVAL 69


>gi|222054634|ref|YP_002536996.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
 gi|221563923|gb|ACM19895.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
          Length = 66

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI      ++G+DVF+H SA+   G  +L EG+ V++D V N   G
Sbjct: 3  QGKVKWFNDAKGFGFI----EQDNGEDVFVHFSAIVGEGFKSLAEGEAVSFD-VTNGPKG 57

Query: 64 KYSAENLKLV 73
             A N+K +
Sbjct: 58 -LQAANVKKI 66


>gi|260905033|ref|ZP_05913355.1| cold-shock DNA-binding domain protein [Brevibacterium linens BL2]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N +KG+GFI P+   +   DVF H SA+ S G   L EGQ V +D
Sbjct: 4  GTVKWFNSEKGFGFIQPD---DGSADVFTHFSAIESTGYRELAEGQNVEFD 51


>gi|78065067|ref|YP_367836.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
          383]
 gi|107024146|ref|YP_622473.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia AU 1054]
 gi|115350462|ref|YP_772301.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria AMMD]
 gi|116688527|ref|YP_834150.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia HI2424]
 gi|134294597|ref|YP_001118332.1| cold-shock DNA-binding protein family protein [Burkholderia
          vietnamiensis G4]
 gi|170701451|ref|ZP_02892407.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|170731829|ref|YP_001763776.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|171319075|ref|ZP_02908199.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|172059495|ref|YP_001807147.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|206558773|ref|YP_002229533.1| cold shock-like protein CspD [Burkholderia cenocepacia J2315]
 gi|254246471|ref|ZP_04939792.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
 gi|254253382|ref|ZP_04946700.1| Cold-shock protein [Burkholderia dolosa AUO158]
 gi|77965812|gb|ABB07192.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
 gi|105894335|gb|ABF77500.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          AU 1054]
 gi|115280450|gb|ABI85967.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
          AMMD]
 gi|116646616|gb|ABK07257.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          HI2424]
 gi|124871247|gb|EAY62963.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
 gi|124895991|gb|EAY69871.1| Cold-shock protein [Burkholderia dolosa AUO158]
 gi|134137754|gb|ABO53497.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
          G4]
 gi|169815071|gb|ACA89654.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          MC0-3]
 gi|170133648|gb|EDT02020.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171095714|gb|EDT40670.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|171992012|gb|ACB62931.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MC40-6]
 gi|198034810|emb|CAR50678.1| cold shock-like protein CspD [Burkholderia cenocepacia J2315]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITPEG    GDD+F H S +   G   L E Q V ++
Sbjct: 4  GTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVEGFKTLQENQKVEFE 51


>gi|326204316|ref|ZP_08194175.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
          DSM 2782]
 gi|325985591|gb|EGD46428.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
          DSM 2782]
          Length = 66

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N +KG+GFI  +G    G+DVF+H SA+   G   L EG  V +D V+
Sbjct: 1  MEKGRVKWFNAEKGFGFIERDG----GNDVFVHFSAINMDGYKTLEEGSEVVFDVVE 53


>gi|253990173|ref|YP_003041529.1| cold shock-like protein [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253781623|emb|CAQ84786.1| cold shock-like protein cspc (csp-c) [Photorhabdus asymbiotica]
          Length = 70

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +  +++ A G
Sbjct: 6  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFT-IESGAKG 61

Query: 64 KYSA 67
            +A
Sbjct: 62 PAAA 65


>gi|103486965|ref|YP_616526.1| cold-shock DNA-binding domain-containing protein [Sphingopyxis
          alaskensis RB2256]
 gi|98977042|gb|ABF53193.1| cold-shock DNA-binding protein family [Sphingopyxis alaskensis
          RB2256]
          Length = 90

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++K++N DKGYGFI  E    SGD  F+H +AV +AG+  L + Q V+Y+ ++  
Sbjct: 22 LMAIGTVKFFNNDKGYGFI--ENEDGSGDS-FVHITAVQAAGMDTLNKEQRVSYE-LETG 77

Query: 61 ANGKYSAENLK 71
           NGK SA NL+
Sbjct: 78 KNGKVSAINLQ 88


>gi|322436511|ref|YP_004218723.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321164238|gb|ADW69943.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 70

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          ++G +KW+N  KGYGF+  +G    G DVF H SAV + G  +L EG  V +D +  D+ 
Sbjct: 4  YKGQVKWFNNAKGYGFLGRDG----GSDVFCHYSAVQTDGYKSLKEGDEVEFDIIDGDS- 58

Query: 63 GKYSAENL 70
          GK  A+ +
Sbjct: 59 GKPQADKV 66


>gi|300786398|ref|YP_003766689.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
 gi|299795912|gb|ADJ46287.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +GS+KW+N +KG+GFI  +G    G DVF+H S +  +G  +L EGQ V ++  Q 
Sbjct: 3  QGSVKWFNGEKGFGFIAQDG---GGPDVFVHYSEIQGSGFKSLDEGQRVEFEIGQG 55


>gi|238919617|ref|YP_002933132.1| cold shock-like protein CspC [Edwardsiella ictaluri 93-146]
 gi|269138905|ref|YP_003295606.1| cold shock protein [Edwardsiella tarda EIB202]
 gi|294636002|ref|ZP_06714441.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
 gi|317492183|ref|ZP_07950613.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|238869186|gb|ACR68897.1| conserved domain protein [Edwardsiella ictaluri 93-146]
 gi|267984566|gb|ACY84395.1| cold shock protein [Edwardsiella tarda EIB202]
 gi|291090679|gb|EFE23240.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
 gi|304558891|gb|ADM41555.1| Cold shock protein CspC [Edwardsiella tarda FL6-60]
 gi|316919888|gb|EFV41217.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 5  KGQVKWFNEAKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQHVEFE-IQDGQKG 60

Query: 64 KYSAENLKLV 73
            SA N+  +
Sbjct: 61 P-SAVNVTAI 69


>gi|161526063|ref|YP_001581075.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          multivorans ATCC 17616]
 gi|167587642|ref|ZP_02380030.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu]
 gi|189349222|ref|YP_001944850.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|221201715|ref|ZP_03574753.1| cold-shock domain family protein [Burkholderia multivorans CGD2M]
 gi|221207210|ref|ZP_03580220.1| cold-shock domain family protein [Burkholderia multivorans CGD2]
 gi|221213338|ref|ZP_03586313.1| cold-shock domain family protein [Burkholderia multivorans CGD1]
 gi|160343492|gb|ABX16578.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
          ATCC 17616]
 gi|189333244|dbj|BAG42314.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|221166790|gb|EED99261.1| cold-shock domain family protein [Burkholderia multivorans CGD1]
 gi|221172798|gb|EEE05235.1| cold-shock domain family protein [Burkholderia multivorans CGD2]
 gi|221178531|gb|EEE10940.1| cold-shock domain family protein [Burkholderia multivorans CGD2M]
 gi|325518815|gb|EGC98394.1| CspA family cold shock protein [Burkholderia sp. TJI49]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITPEG    GDD+F H S +   G   L E Q V ++
Sbjct: 4  GTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVEGFKTLQENQKVEFE 51


>gi|289628626|ref|ZP_06461580.1| cold-shock protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651512|ref|ZP_06482855.1| cold-shock protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868605|gb|EGH03314.1| cold-shock protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 202

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 136 GTVKWFNASKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 191 QAEDVIAALPR 201


>gi|157369915|ref|YP_001477904.1| cold-shock DNA-binding domain-containing protein [Serratia
          proteamaculans 568]
 gi|157321679|gb|ABV40776.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
          Length = 73

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V++D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVSFDVHQ 54


>gi|320161036|ref|YP_004174260.1| cold shock protein [Anaerolinea thermophila UNI-1]
 gi|319994889|dbj|BAJ63660.1| cold shock protein [Anaerolinea thermophila UNI-1]
          Length = 72

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 6/74 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          + G++KW+N  KGYGFI  + +  +GDDVF+H SA+   G   L EGQ V ++  Q    
Sbjct: 5  YTGTVKWFNATKGYGFIGRDDN--AGDDVFVHFSAIQMEGYRTLKEGQKVEFEIEQ---- 58

Query: 63 GKYSAENLKLVPKS 76
          G    +  ++VP S
Sbjct: 59 GPKGLQAAQVVPLS 72


>gi|270159744|ref|ZP_06188400.1| cold shock protein CspC [Legionella longbeachae D-4968]
 gi|289165485|ref|YP_003455623.1| DNA-binding transcriptional repressor [Legionella longbeachae
          NSW150]
 gi|269988083|gb|EEZ94338.1| cold shock protein CspC [Legionella longbeachae D-4968]
 gi|288858658|emb|CBJ12553.1| DNA-binding transcriptional repressor [Legionella longbeachae
          NSW150]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI      E G DVF H   +AS+G   LTEGQ V +   Q
Sbjct: 7  GVVKWFNETKGFGFI----EQECGPDVFAHFKEIASSGFRTLTEGQRVKFIVTQ 56


>gi|153955498|ref|YP_001396263.1| hypothetical protein CKL_2880 [Clostridium kluyveri DSM 555]
 gi|219855901|ref|YP_002473023.1| hypothetical protein CKR_2558 [Clostridium kluyveri NBRC 12016]
 gi|146348356|gb|EDK34892.1| Hypothetical protein CKL_2880 [Clostridium kluyveri DSM 555]
 gi|219569625|dbj|BAH07609.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 65

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N +KG+GFIT     E G DVF H S + S G   L EGQ V++D
Sbjct: 3  GTVKWFNGNKGFGFITG----EDGKDVFAHFSQINSEGYKTLEEGQKVSFD 49


>gi|189425683|ref|YP_001952860.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
 gi|189421942|gb|ACD96340.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
          Length = 66

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GF+  EG    G+DVF+H SA+ S G  +L EG  V ++ V+
Sbjct: 4  GRVKWFNDSKGFGFLEQEG----GEDVFVHFSAINSNGFKSLAEGDTVEFEVVK 53


>gi|146312144|ref|YP_001177218.1| cold-shock DNA-binding protein family protein [Enterobacter sp.
          638]
 gi|145319020|gb|ABP61167.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
          Length = 70

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFITP    +   DVF+H SA+ S+    L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFNSEKGFGFITP---ADGSKDVFVHFSAIQSSDYKTLDEGQKVEFS-IENGAKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|330936728|gb|EGH40913.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 105

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  +  D
Sbjct: 39 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRD 90


>gi|307729849|ref|YP_003907073.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1003]
 gi|323525902|ref|YP_004228055.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1001]
 gi|307584384|gb|ADN57782.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
 gi|323382904|gb|ADX54995.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G+D+F H S + + G  +L E Q V+++ V+    GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRAEGFKSLQENQKVSFE-VKQGPKGK 59

Query: 65 YSAE 68
           +A+
Sbjct: 60 QAAD 63


>gi|270261164|ref|ZP_06189437.1| hypothetical protein SOD_a03890 [Serratia odorifera 4Rx13]
 gi|270044648|gb|EFA17739.1| hypothetical protein SOD_a03890 [Serratia odorifera 4Rx13]
          Length = 73

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V++D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVSFDVHQ 54


>gi|149909599|ref|ZP_01898252.1| cold shock-like protein [Moritella sp. PE36]
 gi|149807303|gb|EDM67256.1| cold shock-like protein [Moritella sp. PE36]
          Length = 73

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI PE     GDDVF H S +   G   L  GQLV Y+
Sbjct: 4  GTVKWFNNAKGFGFICPE---SGGDDVFAHFSIIQMDGYRTLKAGQLVDYE 51


>gi|91777357|ref|YP_552565.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|296159608|ref|ZP_06842431.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|91690017|gb|ABE33215.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
 gi|158187225|gb|ABW22844.1| hypothetical protein [Burkholderia sp. NCIMB 10467]
 gi|295890052|gb|EFG69847.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N  KG+GFITP+   + GDD+F H S ++  G   L E Q V+++  Q
Sbjct: 1  MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGDGFKTLAENQKVSFETKQ 54


>gi|251789584|ref|YP_003004305.1| cold shock-like protein CspC [Dickeya zeae Ech1591]
 gi|271500505|ref|YP_003333530.1| cold-shock DNA-binding domain-containing protein [Dickeya
          dadantii Ech586]
 gi|307131152|ref|YP_003883168.1| stress protein, member of the CspA-family [Dickeya dadantii 3937]
 gi|247538205|gb|ACT06826.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591]
 gi|270344060|gb|ACZ76825.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586]
 gi|306528681|gb|ADM98611.1| stress protein, member of the CspA-family [Dickeya dadantii 3937]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60


>gi|167584235|ref|ZP_02376623.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+   + GDD+F H S +   G   L E Q V+Y+
Sbjct: 4  GTVKWFNETKGFGFITPD---KGGDDLFAHFSEIRGTGFKTLAENQKVSYE 51


>gi|56477977|ref|YP_159566.1| putative cold-shock protein [Aromatoleum aromaticum EbN1]
 gi|56314020|emb|CAI08665.1| putative cold-shock protein [Aromatoleum aromaticum EbN1]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+  +E   D+F H SA+   G   L EG+ V+++  Q
Sbjct: 4  GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMNGFKTLKEGEKVSFEVTQ 54


>gi|325106571|ref|YP_004267647.1| putative cold-shock protein C [Staphylococcus simulans bv.
          staphylolyticus]
 gi|324033744|gb|ADY16745.1| putative cold-shock protein C [Staphylococcus simulans bv.
          staphylolyticus]
          Length = 66

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          ++ G++KW+N +KG+GFI      E+G DVF+H S +A  G  +L +GQ V +D V
Sbjct: 1  MNNGTVKWFNSEKGFGFI----ERENGSDVFVHFSGIAGEGYKSLEDGQNVDFDIV 52


>gi|322381500|ref|ZP_08055480.1| cold-shock protein molecular chaperone RNA-helicase
          co-factor-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|322382685|ref|ZP_08056543.1| cold-shock protein molecular chaperone-like
          protein/RNA-helicase-like protein co-factor
          [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153346|gb|EFX45776.1| cold-shock protein molecular chaperone-like
          protein/RNA-helicase-like protein co-factor
          [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154542|gb|EFX46838.1| cold-shock protein molecular chaperone RNA-helicase
          co-factor-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 68

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI      E G+DVF+H S++   G  +L EGQ V ++  Q   
Sbjct: 1  MQTGTVKWFNAEKGFGFI----EIEQGNDVFVHFSSIEGDGYKSLDEGQRVQFNVTQ--G 54

Query: 62 NGKYSAENLKLV 73
          N    AEN+  V
Sbjct: 55 NRGPQAENVSKV 66


>gi|320540284|ref|ZP_08039936.1| putative stress protein, member of the CspA-family [Serratia
          symbiotica str. Tucson]
 gi|320029604|gb|EFW11631.1| putative stress protein, member of the CspA-family [Serratia
          symbiotica str. Tucson]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60


>gi|257453238|ref|ZP_05618537.1| cold-shock domain-contain protein [Fusobacterium sp. 3_1_5R]
 gi|257467171|ref|ZP_05631482.1| cold-shock domain-contain protein [Fusobacterium gonidiaformans
          ATCC 25563]
 gi|315918302|ref|ZP_07914542.1| cold-shock protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059772|ref|ZP_07924257.1| cold-shock protein [Fusobacterium sp. 3_1_5R]
 gi|313685448|gb|EFS22283.1| cold-shock protein [Fusobacterium sp. 3_1_5R]
 gi|313692177|gb|EFS29012.1| cold-shock protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFIT E +     D F+H S +A  G  +L EGQ VT++
Sbjct: 3  KGTVKWFNNEKGFGFITGEDTV----DYFVHFSGIAGEGFKSLEEGQAVTFE 50


>gi|254785982|ref|YP_003073411.1| cspA cold-shock DNA-binding domain-containing protein
          [Teredinibacter turnerae T7901]
 gi|237687500|gb|ACR14764.1| cspA cold-shock DNA-binding domain protein [Teredinibacter
          turnerae T7901]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KGYGFI+ EG    G D+F+H S +  +G   L EGQ VT+
Sbjct: 7  GTVKWFNESKGYGFISREG----GADLFVHFSNIIGSGFKTLKEGQAVTF 52


>gi|226953337|ref|ZP_03823801.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|294651960|ref|ZP_06729249.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
 gi|226835963|gb|EEH68346.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|292822192|gb|EFF81106.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      +SG DVF H S +A++G   L EGQ V++   Q    G+
Sbjct: 7  GTVKWFNETKGFGFI----QQQSGPDVFAHFSEIANSGFKTLYEGQQVSFSVAQ----GQ 58

Query: 65 YSAENLKLVP 74
               + +VP
Sbjct: 59 KGPNAVNIVP 68


>gi|213969178|ref|ZP_03397317.1| Cold-shock DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|301384826|ref|ZP_07233244.1| cold-shock protein [Pseudomonas syringae pv. tomato Max13]
 gi|302130616|ref|ZP_07256606.1| cold-shock protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213926176|gb|EEB59732.1| Cold-shock DNA-binding protein [Pseudomonas syringae pv. tomato T1]
          Length = 202

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 191 QAEDVIAALPR 201


>gi|118470416|ref|YP_884970.1| hypothetical protein MSMEG_0559 [Mycobacterium smegmatis str. MC2
          155]
 gi|118171703|gb|ABK72599.1| conserved domain protein [Mycobacterium smegmatis str. MC2 155]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P+G      DVF+H S ++ +G  +L E Q V ++  Q
Sbjct: 3  QGTVKWFNGEKGFGFIAPDGGA---PDVFVHYSEISGSGFRSLEENQRVEFEITQ 54


>gi|50121319|ref|YP_050486.1| cold shock-like protein CspC [Pectobacterium atrosepticum
          SCRI1043]
 gi|85059298|ref|YP_455000.1| cold shock-like protein CspC [Sodalis glossinidius str.
          'morsitans']
 gi|227111514|ref|ZP_03825170.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
 gi|227327800|ref|ZP_03831824.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
          carotovorum WPP14]
 gi|253688307|ref|YP_003017497.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|261821484|ref|YP_003259590.1| cold shock-like protein CspC [Pectobacterium wasabiae WPP163]
 gi|49611845|emb|CAG75294.1| cold shock protein [Pectobacterium atrosepticum SCRI1043]
 gi|84779818|dbj|BAE74595.1| cold shock protein [Sodalis glossinidius str. 'morsitans']
 gi|251754885|gb|ACT12961.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|261605497|gb|ACX87983.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60


>gi|88811641|ref|ZP_01126895.1| probable cold-shock protein [Nitrococcus mobilis Nb-231]
 gi|88791032|gb|EAR22145.1| probable cold-shock protein [Nitrococcus mobilis Nb-231]
          Length = 70

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G +KW++  KGYGFI    S E G DVF+H  A+   G   L EGQ V +D V+ 
Sbjct: 7  GVVKWFDDSKGYGFI----SQEQGPDVFVHFRAIRGEGFRTLREGQRVEFDIVEG 57


>gi|170691171|ref|ZP_02882337.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
 gi|170144420|gb|EDT12582.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N  KG+GFITP+   + GDD+F H S ++  G   L E Q V+++  Q
Sbjct: 1  MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGNGFKTLAENQKVSFETKQ 54


>gi|157963078|ref|YP_001503112.1| cold-shock DNA-binding domain-containing protein [Shewanella
          pealeana ATCC 700345]
 gi|167625248|ref|YP_001675542.1| cold-shock DNA-binding domain-containing protein [Shewanella
          halifaxensis HAW-EB4]
 gi|157848078|gb|ABV88577.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
          700345]
 gi|167355270|gb|ABZ77883.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis
          HAW-EB4]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+ S G   L EGQ V+++  Q
Sbjct: 6  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAITSDGFKTLAEGQKVSFEVEQ 56


>gi|187921398|ref|YP_001890430.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phytofirmans PsJN]
 gi|187719836|gb|ACD21059.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N  KG+GFITP+   + GDD+F H S ++  G   L E Q V+++  Q
Sbjct: 1  MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGDGFKTLAENQKVSFETKQ 54


>gi|330964818|gb|EGH65078.1| cold-shock protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 202

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 191 QAEDVIAALPR 201


>gi|308188556|ref|YP_003932687.1| Cold shock-like protein cspA [Pantoea vagans C9-1]
 gi|308059066|gb|ADO11238.1| Cold shock-like protein cspA [Pantoea vagans C9-1]
          Length = 70

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N DKG+GFITP+  ++   DVF+H SA+ +     L EGQ V++  ++N A G
Sbjct: 7  GLVKWFNSDKGFGFITPDDGSK---DVFVHFSAIQADNYKTLDEGQKVSF-TIENGAKG 61


>gi|291517937|emb|CBK73158.1| cold-shock DNA-binding protein family [Butyrivibrio fibrisolvens
          16/4]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI    S E G DVF+H S + S G   L EG  V Y+ V + A G
Sbjct: 3  KGTVKWFNNSKGYGFI----SDEEGKDVFVHFSGINSEGFKTLEEGATVEYE-VTDGAKG 57


>gi|260598298|ref|YP_003210869.1| Cold shock-like protein cspC [Cronobacter turicensis z3032]
 gi|260217475|emb|CBA31616.1| Cold shock-like protein cspC [Cronobacter turicensis z3032]
          Length = 106

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 42 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 97


>gi|119897425|ref|YP_932638.1| cold-shock protein [Azoarcus sp. BH72]
 gi|119669838|emb|CAL93751.1| cold-shock protein [Azoarcus sp. BH72]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+  +E   D+F H SA+   G   L EG+ V+++  Q
Sbjct: 4  GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMNGFKTLKEGEKVSFEVTQ 54


>gi|50084495|ref|YP_046005.1| putative cold shock protein [Acinetobacter sp. ADP1]
 gi|49530471|emb|CAG68183.1| putative cold shock protein [Acinetobacter sp. ADP1]
          Length = 70

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI   G    GDDVF+H  A+   G  +L +GQ V +  VQ     
Sbjct: 6  QGVVKWFNDTKGFGFIQRNG----GDDVFVHFRAIMGDGHRSLRDGQRVEFSVVQGQKG- 60

Query: 64 KYSAENLK 71
           + AEN++
Sbjct: 61 -FQAENVQ 67


>gi|45441309|ref|NP_992848.1| cold shock-like protein CspC [Yersinia pestis biovar Microtus
          str. 91001]
 gi|51595960|ref|YP_070151.1| cold shock-like protein CspC [Yersinia pseudotuberculosis IP
          32953]
 gi|108807116|ref|YP_651032.1| cold shock-like protein CspC [Yersinia pestis Antiqua]
 gi|108812537|ref|YP_648304.1| cold shock-like protein CspC [Yersinia pestis Nepal516]
 gi|123442059|ref|YP_001006042.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|145598663|ref|YP_001162739.1| cold shock-like protein CspC [Yersinia pestis Pestoides F]
 gi|149366301|ref|ZP_01888336.1| cold shock protein [Yersinia pestis CA88-4125]
 gi|157371062|ref|YP_001479051.1| cold shock-like protein CspC [Serratia proteamaculans 568]
 gi|165927969|ref|ZP_02223801.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|166010855|ref|ZP_02231753.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166211069|ref|ZP_02237104.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167420033|ref|ZP_02311786.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167427111|ref|ZP_02318864.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|170024699|ref|YP_001721204.1| cold shock-like protein CspC [Yersinia pseudotuberculosis YPIII]
 gi|186895059|ref|YP_001872171.1| cold shock-like protein CspC [Yersinia pseudotuberculosis PB1/+]
 gi|218928871|ref|YP_002346746.1| cold shock-like protein CspC [Yersinia pestis CO92]
 gi|229894196|ref|ZP_04509379.1| stress protein, member of the CspA-family [Yersinia pestis
          Pestoides A]
 gi|229897121|ref|ZP_04512277.1| stress protein, member of the CspA-family [Yersinia pestis biovar
          Orientalis str. PEXU2]
 gi|229897848|ref|ZP_04512999.1| stress protein, member of the CspA-family [Yersinia pestis biovar
          Orientalis str. India 195]
 gi|229902921|ref|ZP_04518038.1| stress protein, member of the CspA-family [Yersinia pestis
          Nepal516]
 gi|257168081|ref|YP_003169746.1| cold shock-like protein CspC [Yersinia pestis KIM 10]
 gi|270262270|ref|ZP_06190542.1| Cold shock-like protein CspC [Serratia odorifera 4Rx13]
 gi|270486706|ref|ZP_06203780.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|284988616|ref|YP_003422337.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
 gi|293395700|ref|ZP_06639982.1| MerR family copper efflux regulator [Serratia odorifera DSM 4582]
 gi|322833600|ref|YP_004213627.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|332162025|ref|YP_004298602.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|45436169|gb|AAS61725.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
 gi|51589242|emb|CAH20863.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
 gi|108776185|gb|ABG18704.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108779029|gb|ABG13087.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
 gi|115347482|emb|CAL20388.1| cold shock protein [Yersinia pestis CO92]
 gi|122089020|emb|CAL11834.1| cold shock-like protein cspC1 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|145210359|gb|ABP39766.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|149292714|gb|EDM42788.1| cold shock protein [Yersinia pestis CA88-4125]
 gi|157322826|gb|ABV41923.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
 gi|165920026|gb|EDR37327.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165990199|gb|EDR42500.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166208249|gb|EDR52729.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166961728|gb|EDR57749.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167053904|gb|EDR63736.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|169751233|gb|ACA68751.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186698085|gb|ACC88714.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229680368|gb|EEO76467.1| stress protein, member of the CspA-family [Yersinia pestis
          Nepal516]
 gi|229688889|gb|EEO80954.1| stress protein, member of the CspA-family [Yersinia pestis biovar
          Orientalis str. India 195]
 gi|229693458|gb|EEO83507.1| stress protein, member of the CspA-family [Yersinia pestis biovar
          Orientalis str. PEXU2]
 gi|229703594|gb|EEO90610.1| stress protein, member of the CspA-family [Yersinia pestis
          Pestoides A]
 gi|270044146|gb|EFA17238.1| Cold shock-like protein CspC [Serratia odorifera 4Rx13]
 gi|270335210|gb|EFA45987.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|291421637|gb|EFE94884.1| MerR family copper efflux regulator [Serratia odorifera DSM 4582]
 gi|320015521|gb|ADV99092.1| stress protein, member of the CspA-family [Yersinia pestis biovar
          Medievalis str. Harbin 35]
 gi|321168801|gb|ADW74500.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|325666255|gb|ADZ42899.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330860843|emb|CBX71127.1| cold shock-like protein cspC [Yersinia enterocolitica W22703]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60

Query: 64 KYSAENLKLV 73
            SA N+  +
Sbjct: 61 P-SAVNVTAI 69


>gi|237746308|ref|ZP_04576788.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
          HOxBLS]
 gi|229377659|gb|EEO27750.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
          HOxBLS]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N  KG+GFITP+     G D+F H S +  +G  +LTEGQ V ++
Sbjct: 1  METGTVKWFNDSKGFGFITPD---SHGADLFAHFSEIQGSGFKSLTEGQKVRFE 51


>gi|226945960|ref|YP_002801033.1| Cold-shock-like protein [Azotobacter vinelandii DJ]
 gi|226720887|gb|ACO80058.1| Cold-shock-like protein [Azotobacter vinelandii DJ]
          Length = 69

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI      ESG DVF+H  A+   G  +L EGQ V +  +Q
Sbjct: 7  GTVKWFNDAKGYGFI----QRESGPDVFVHYRAIRGEGHRSLIEGQKVEFSVIQ 56


>gi|329934360|ref|ZP_08284439.1| cold shock protein [Streptomyces griseoaurantiacus M045]
 gi|329305956|gb|EGG49811.1| cold shock protein [Streptomyces griseoaurantiacus M045]
          Length = 68

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI+     + G DVF H S +  +G   LTEG+ VT+D  Q
Sbjct: 4  GTVKWFNSEKGFGFIS---QNDGGPDVFAHYSEINGSGYRELTEGEQVTFDIGQ 54


>gi|323483687|ref|ZP_08089070.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14163]
 gi|323692654|ref|ZP_08106885.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14673]
 gi|323403023|gb|EGA95338.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14163]
 gi|323503291|gb|EGB19122.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14673]
          Length = 67

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +++G++KW+N  KGYGFI    S E G+D+F+H S +A  G   L +GQ V+++  +
Sbjct: 1  MNKGTVKWFNSQKGYGFI----SDEQGNDIFVHFSGLAMDGYKTLEDGQSVSFEVTE 53


>gi|330975335|gb|EGH75401.1| cold-shock protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 202

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 191 QAEDVIAALPR 201


>gi|330968898|gb|EGH68964.1| cold-shock protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 202

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 191 QAEDVIAALPR 201


>gi|237800212|ref|ZP_04588673.1| cold-shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023069|gb|EGI03126.1| cold-shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 202

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 191 QAEDVIAALPR 201


>gi|78221460|ref|YP_383207.1| cold-shock DNA-binding protein family protein [Geobacter
          metallireducens GS-15]
 gi|78192715|gb|ABB30482.1| cold-shock DNA-binding protein family [Geobacter metallireducens
          GS-15]
          Length = 66

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+      ++G+DVF H SA+A  G  +LTEG  VT++  +
Sbjct: 4  GTVKWFNDSKGFGFL----EQDNGEDVFCHFSAIAGDGFKSLTEGDRVTFEVTK 53


>gi|329296308|ref|ZP_08253644.1| CspB [Plautia stali symbiont]
          Length = 70

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI+PE S++   DVF+H SA+      +L +GQ V    V+N + G 
Sbjct: 7  GTVKWFNAEKGFGFISPEDSSK---DVFVHFSAIQGTDFRSLDDGQKVELS-VENGSKGP 62

Query: 65 YSAENLK 71
           SA N+K
Sbjct: 63 -SAVNVK 68


>gi|326796223|ref|YP_004314043.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
 gi|326546987|gb|ADZ92207.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
          Length = 69

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 8/73 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++K++N  KG+GFIT     E G DVF+H SA+  +G   L EGQ V ++     A
Sbjct: 4  VVTGTVKFFNETKGFGFIT----QEQGPDVFVHFSAINVSGFKTLAEGQKVQFEV----A 55

Query: 62 NGKYSAENLKLVP 74
          +GK   E   + P
Sbjct: 56 DGKKGPEAQNVTP 68


>gi|289674663|ref|ZP_06495553.1| cold-shock protein [Pseudomonas syringae pv. syringae FF5]
          Length = 202

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 191 QAEDVIAALPR 201


>gi|120554677|ref|YP_959028.1| cold-shock DNA-binding domain-containing protein [Marinobacter
          aquaeolei VT8]
 gi|120324526|gb|ABM18841.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei
          VT8]
          Length = 103

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +KW+N  KGYGFI  +G +   DD+F H S+V   G   L  GQ VT+D   +D
Sbjct: 3  RGKVKWFNNAKGYGFIIEDGCS---DDLFAHFSSVQMDGYKTLKAGQTVTFDKKPSD 56


>gi|15802236|ref|NP_288259.1| cold shock-like protein CspC [Escherichia coli O157:H7 EDL933]
 gi|15831787|ref|NP_310560.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
          Sakai]
 gi|16129777|ref|NP_416337.1| stress protein, member of the CspA-family [Escherichia coli str.
          K-12 substr. MG1655]
 gi|16760726|ref|NP_456343.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|16765178|ref|NP_460793.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|26248085|ref|NP_754125.1| cold shock-like protein CspC [Escherichia coli CFT073]
 gi|29141516|ref|NP_804858.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|30062921|ref|NP_837092.1| cold shock-like protein CspC [Shigella flexneri 2a str. 2457T]
 gi|56413244|ref|YP_150319.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62180401|ref|YP_216818.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|74311864|ref|YP_310283.1| cold shock-like protein CspC [Shigella sonnei Ss046]
 gi|82777211|ref|YP_403560.1| cold shock-like protein CspC [Shigella dysenteriae Sd197]
 gi|89108662|ref|AP_002442.1| stress protein, member of the CspA-family [Escherichia coli str.
          K-12 substr. W3110]
 gi|91211042|ref|YP_541028.1| cold shock-like protein CspC [Escherichia coli UTI89]
 gi|110641940|ref|YP_669670.1| cold shock-like protein CspC [Escherichia coli 536]
 gi|110805383|ref|YP_688903.1| cold shock-like protein CspC [Shigella flexneri 5 str. 8401]
 gi|146312039|ref|YP_001177113.1| cold shock-like protein CspC [Enterobacter sp. 638]
 gi|152970887|ref|YP_001335996.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
 gi|157145410|ref|YP_001452730.1| cold shock-like protein CspC [Citrobacter koseri ATCC BAA-895]
 gi|157157347|ref|YP_001463124.1| cold shock-like protein CspC [Escherichia coli E24377A]
 gi|157161289|ref|YP_001458607.1| cold shock-like protein CspC [Escherichia coli HS]
 gi|161503039|ref|YP_001570151.1| cold shock-like protein CspC [Salmonella enterica subsp. arizonae
          serovar 62:z4,z23:-- str. RSK2980]
 gi|161613652|ref|YP_001587617.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Paratyphi B str. SPB7]
 gi|167553480|ref|ZP_02347229.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|167993785|ref|ZP_02574878.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|168234267|ref|ZP_02659325.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|168241432|ref|ZP_02666364.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|168259923|ref|ZP_02681896.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|168462668|ref|ZP_02696599.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|168820589|ref|ZP_02832589.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|170081478|ref|YP_001730798.1| CspA family stress protein [Escherichia coli str. K-12 substr.
          DH10B]
 gi|170682897|ref|YP_001743423.1| cold shock-like protein CspC [Escherichia coli SMS-3-5]
 gi|170769370|ref|ZP_02903823.1| cold shock protein CspC [Escherichia albertii TW07627]
 gi|170770188|ref|ZP_02904641.1| cold shock protein CspC [Escherichia albertii TW07627]
 gi|187733001|ref|YP_001880620.1| cold shock-like protein CspC [Shigella boydii CDC 3083-94]
 gi|188492990|ref|ZP_03000260.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|188533664|ref|YP_001907461.1| cold shock-like protein CspC [Erwinia tasmaniensis Et1/99]
 gi|189403500|ref|ZP_02795809.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC4486]
 gi|189404552|ref|ZP_02790213.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC4501]
 gi|189405077|ref|ZP_02813248.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC869]
 gi|191171767|ref|ZP_03033314.1| cold shock protein CspC [Escherichia coli F11]
 gi|194430509|ref|ZP_03062983.1| cold shock protein CspC [Escherichia coli B171]
 gi|194434939|ref|ZP_03067183.1| cold shock protein CspC [Shigella dysenteriae 1012]
 gi|194446619|ref|YP_002041093.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194447468|ref|YP_002045883.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194471139|ref|ZP_03077123.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194735301|ref|YP_002114871.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195940304|ref|ZP_03085686.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
          EC4024]
 gi|197247963|ref|YP_002146187.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197265795|ref|ZP_03165869.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197362170|ref|YP_002141807.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|198245948|ref|YP_002215303.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|200391118|ref|ZP_03217729.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|205352499|ref|YP_002226300.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|206580814|ref|YP_002237792.1| cold shock protein CspC [Klebsiella pneumoniae 342]
 gi|207856657|ref|YP_002243308.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|208810722|ref|ZP_03252598.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4206]
 gi|208816517|ref|ZP_03257637.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4045]
 gi|208819312|ref|ZP_03259632.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4042]
 gi|209397128|ref|YP_002270903.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4115]
 gi|209919188|ref|YP_002293272.1| cold shock-like protein CspC [Escherichia coli SE11]
 gi|213028972|ref|ZP_03343419.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
 gi|213162944|ref|ZP_03348654.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
 gi|213420305|ref|ZP_03353371.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
 gi|213424204|ref|ZP_03357069.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. E02-1180]
 gi|213581262|ref|ZP_03363088.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
 gi|213620853|ref|ZP_03373636.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
 gi|213649656|ref|ZP_03379709.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
 gi|213855888|ref|ZP_03384128.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
 gi|215487035|ref|YP_002329466.1| cold shock-like protein CspC [Escherichia coli O127:H6 str.
          E2348/69]
 gi|217328839|ref|ZP_03444920.1| cold shock protein CspC [Escherichia coli O157:H7 str. TW14588]
 gi|218548618|ref|YP_002382409.1| cold shock-like protein CspC [Escherichia fergusonii ATCC 35469]
 gi|218554396|ref|YP_002387309.1| cold shock-like protein CspC [Escherichia coli IAI1]
 gi|218558685|ref|YP_002391598.1| cold shock-like protein CspC [Escherichia coli S88]
 gi|218689759|ref|YP_002397971.1| cold shock-like protein CspC [Escherichia coli ED1a]
 gi|218695386|ref|YP_002403053.1| cold shock-like protein CspC [Escherichia coli 55989]
 gi|218699608|ref|YP_002407237.1| cold shock-like protein CspC [Escherichia coli IAI39]
 gi|218705322|ref|YP_002412841.1| cold shock-like protein CspC [Escherichia coli UMN026]
 gi|224583673|ref|YP_002637471.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|227885751|ref|ZP_04003556.1| cold shock family protein CspC [Escherichia coli 83972]
 gi|237705773|ref|ZP_04536254.1| cold shock protein [Escherichia sp. 3_2_53FAA]
 gi|237731860|ref|ZP_04562341.1| cold shock-like protein cspC [Citrobacter sp. 30_2]
 gi|238895399|ref|YP_002920134.1| cold shock-like protein CspC [Klebsiella pneumoniae NTUH-K2044]
 gi|238901037|ref|YP_002926833.1| stress protein, member of the CspA-family [Escherichia coli
          BW2952]
 gi|238912099|ref|ZP_04655936.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Tennessee str. CDC07-0191]
 gi|253773223|ref|YP_003036054.1| cold shock-like protein CspC [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161882|ref|YP_003044990.1| cold shock-like protein CspC [Escherichia coli B str. REL606]
 gi|254793446|ref|YP_003078283.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
          TW14359]
 gi|256017989|ref|ZP_05431854.1| cold shock-like protein CspC [Shigella sp. D9]
 gi|256022513|ref|ZP_05436378.1| cold shock-like protein CspC [Escherichia sp. 4_1_40B]
 gi|259908254|ref|YP_002648610.1| cold shock-like protein CspC [Erwinia pyrifoliae Ep1/96]
 gi|260844168|ref|YP_003221946.1| stress protein CspC [Escherichia coli O103:H2 str. 12009]
 gi|260855683|ref|YP_003229574.1| stress protein CspC [Escherichia coli O26:H11 str. 11368]
 gi|260868343|ref|YP_003234745.1| stress protein CspC [Escherichia coli O111:H- str. 11128]
 gi|261227680|ref|ZP_05941961.1| stress protein, member of the CspA-family [Escherichia coli
          O157:H7 str. FRIK2000]
 gi|261258154|ref|ZP_05950687.1| Cold shock-like protein cspC [Escherichia coli O157:H7 str.
          FRIK966]
 gi|261340207|ref|ZP_05968065.1| conserved domain protein [Enterobacter cancerogenus ATCC 35316]
 gi|262041935|ref|ZP_06015118.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|283832781|ref|ZP_06352522.1| conserved domain protein [Citrobacter youngae ATCC 29220]
 gi|288934716|ref|YP_003438775.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|289804519|ref|ZP_06535148.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
 gi|289825969|ref|ZP_06545128.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-3139]
 gi|290508848|ref|ZP_06548219.1| cold shock protein CspG [Klebsiella sp. 1_1_55]
 gi|291283004|ref|YP_003499822.1| hypothetical protein G2583_2272 [Escherichia coli O55:H7 str.
          CB9615]
 gi|292488490|ref|YP_003531374.1| cold shock-like protein CspC [Erwinia amylovora CFBP1430]
 gi|292899677|ref|YP_003539046.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
 gi|293405319|ref|ZP_06649311.1| cold shock protein CspG [Escherichia coli FVEC1412]
 gi|293410131|ref|ZP_06653707.1| cold shock protein cspC [Escherichia coli B354]
 gi|293415138|ref|ZP_06657781.1| cold shock protein CspG [Escherichia coli B185]
 gi|293446195|ref|ZP_06662617.1| cold shock protein CspG [Escherichia coli B088]
 gi|296101843|ref|YP_003611989.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|298380961|ref|ZP_06990560.1| cold shock-like protein cspC [Escherichia coli FVEC1302]
 gi|300717038|ref|YP_003741841.1| cold shock protein [Erwinia billingiae Eb661]
 gi|300816289|ref|ZP_07096511.1| cold shock protein CspE [Escherichia coli MS 107-1]
 gi|300825532|ref|ZP_07105593.1| cold shock protein CspE [Escherichia coli MS 119-7]
 gi|300899064|ref|ZP_07117350.1| cold shock protein CspE [Escherichia coli MS 198-1]
 gi|300904686|ref|ZP_07122520.1| cold shock protein CspE [Escherichia coli MS 84-1]
 gi|300917606|ref|ZP_07134258.1| cold shock protein CspE [Escherichia coli MS 115-1]
 gi|300924891|ref|ZP_07140823.1| cold shock protein CspE [Escherichia coli MS 182-1]
 gi|300928850|ref|ZP_07144356.1| cold shock protein CspE [Escherichia coli MS 187-1]
 gi|300938827|ref|ZP_07153537.1| cold shock protein CspE [Escherichia coli MS 21-1]
 gi|300951435|ref|ZP_07165274.1| cold shock protein CspE [Escherichia coli MS 116-1]
 gi|300956672|ref|ZP_07168948.1| cold shock protein CspE [Escherichia coli MS 175-1]
 gi|300981990|ref|ZP_07175834.1| cold shock protein CspE [Escherichia coli MS 200-1]
 gi|300994227|ref|ZP_07180784.1| cold shock protein CspE [Escherichia coli MS 45-1]
 gi|301020113|ref|ZP_07184242.1| cold shock protein CspE [Escherichia coli MS 196-1]
 gi|301026567|ref|ZP_07189993.1| cold shock protein CspE [Escherichia coli MS 69-1]
 gi|301050830|ref|ZP_07197684.1| cold shock protein CspE [Escherichia coli MS 185-1]
 gi|301305922|ref|ZP_07212005.1| cold shock protein CspE [Escherichia coli MS 124-1]
 gi|301327584|ref|ZP_07220801.1| cold shock protein CspE [Escherichia coli MS 78-1]
 gi|301645665|ref|ZP_07245593.1| cold shock protein CspE [Escherichia coli MS 146-1]
 gi|306814930|ref|ZP_07449086.1| Cold shock-like protein cspC [Escherichia coli NC101]
 gi|307138483|ref|ZP_07497839.1| Cold shock-like protein cspC [Escherichia coli H736]
 gi|307314098|ref|ZP_07593710.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|309788269|ref|ZP_07682873.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
 gi|309794201|ref|ZP_07688625.1| cold shock protein CspE [Escherichia coli MS 145-7]
 gi|311279278|ref|YP_003941509.1| cold-shock DNA-binding domain-containing protein [Enterobacter
          cloacae SCF1]
 gi|312967022|ref|ZP_07781240.1| cold shock-like protein cspI [Escherichia coli 2362-75]
 gi|312969860|ref|ZP_07784043.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|317048459|ref|YP_004116107.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
          At-9b]
 gi|330002884|ref|ZP_08304436.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
 gi|331642433|ref|ZP_08343568.1| conserved domain protein [Escherichia coli H736]
 gi|331647319|ref|ZP_08348413.1| conserved domain protein [Escherichia coli M605]
 gi|331653228|ref|ZP_08354233.1| conserved domain protein [Escherichia coli M718]
 gi|331657867|ref|ZP_08358829.1| conserved domain protein [Escherichia coli TA206]
 gi|331663313|ref|ZP_08364223.1| conserved domain protein [Escherichia coli TA143]
 gi|331668514|ref|ZP_08369362.1| conserved domain protein [Escherichia coli TA271]
 gi|331673355|ref|ZP_08374123.1| conserved domain protein [Escherichia coli TA280]
 gi|331677700|ref|ZP_08378375.1| conserved domain protein [Escherichia coli H591]
 gi|331683325|ref|ZP_08383926.1| conserved domain protein [Escherichia coli H299]
 gi|332279025|ref|ZP_08391438.1| cold shock protein [Shigella sp. D9]
 gi|76364245|sp|P0A9Y6|CSPC_ECOLI RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|76364246|sp|P0A9Y9|CSPC_SALTY RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|85687551|sp|P0A9Y8|CSPC_ECO57 RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|85687552|sp|P0A9Y7|CSPC_ECOL6 RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|85687553|sp|P0A9Z0|CSPC_SALTI RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|25296121|pir||AE0727 cold shock-like protein CspC [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|12515869|gb|AAG56812.1|AE005405_3 cold shock protein [Escherichia coli O157:H7 str. EDL933]
 gi|26108488|gb|AAN80690.1|AE016761_265 Cold shock-like protein cspC [Escherichia coli CFT073]
 gi|460698|dbj|BAA05854.1| CspC (MsmB) [Escherichia coli]
 gi|479005|gb|AAA23619.1| cold-shock protein [Escherichia coli]
 gi|1736467|dbj|BAA15634.1| stress protein, member of the CspA-family [Escherichia coli str.
          K12 substr. W3110]
 gi|1788126|gb|AAC74893.1| stress protein, member of the CspA-family [Escherichia coli str.
          K-12 substr. MG1655]
 gi|13362000|dbj|BAB35956.1| cold shock protein [Escherichia coli O157:H7 str. Sakai]
 gi|16420370|gb|AAL20752.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|16503023|emb|CAD05519.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29137143|gb|AAO68707.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|30041170|gb|AAP16899.1| cold shock protein [Shigella flexneri 2a str. 2457T]
 gi|56127501|gb|AAV77007.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62128034|gb|AAX65737.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|73855341|gb|AAZ88048.1| cold shock protein [Shigella sonnei Ss046]
 gi|81241359|gb|ABB62069.1| cold shock protein [Shigella dysenteriae Sd197]
 gi|91072616|gb|ABE07497.1| cold shock protein CspC [Escherichia coli UTI89]
 gi|110343532|gb|ABG69769.1| cold shock-like protein CspC [Escherichia coli 536]
 gi|110614931|gb|ABF03598.1| cold shock protein [Shigella flexneri 5 str. 8401]
 gi|145318915|gb|ABP61062.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
 gi|150955736|gb|ABR77766.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
 gi|157066969|gb|ABV06224.1| cold shock protein CspC [Escherichia coli HS]
 gi|157079377|gb|ABV19085.1| cold shock protein CspC [Escherichia coli E24377A]
 gi|157082615|gb|ABV12293.1| hypothetical protein CKO_01152 [Citrobacter koseri ATCC BAA-895]
 gi|160864386|gb|ABX21009.1| hypothetical protein SARI_01103 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|161363016|gb|ABX66784.1| hypothetical protein SPAB_01376 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|169889313|gb|ACB03020.1| stress protein, member of the CspA-family [Escherichia coli str.
          K-12 substr. DH10B]
 gi|170120949|gb|EDS89880.1| cold shock protein CspC [Escherichia albertii TW07627]
 gi|170121694|gb|EDS90625.1| cold shock protein CspC [Escherichia albertii TW07627]
 gi|170520615|gb|ACB18793.1| cold shock protein CspC [Escherichia coli SMS-3-5]
 gi|187429993|gb|ACD09267.1| cold shock protein CspC [Shigella boydii CDC 3083-94]
 gi|188028706|emb|CAO96568.1| Cold shock protein [Erwinia tasmaniensis Et1/99]
 gi|188488189|gb|EDU63292.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|189360403|gb|EDU78822.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4486]
 gi|189364970|gb|EDU83386.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4501]
 gi|189371934|gb|EDU90350.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC869]
 gi|190908097|gb|EDV67689.1| cold shock protein CspC [Escherichia coli F11]
 gi|194405282|gb|ACF65504.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194405772|gb|ACF65991.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194411450|gb|EDX27798.1| cold shock protein CspC [Escherichia coli B171]
 gi|194416827|gb|EDX32952.1| cold shock protein CspC [Shigella dysenteriae 1012]
 gi|194457503|gb|EDX46342.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194710803|gb|ACF90024.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195634080|gb|EDX52432.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|197093647|emb|CAR59117.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|197211666|gb|ACH49063.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197244050|gb|EDY26670.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197940464|gb|ACH77797.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|199603563|gb|EDZ02109.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|205272280|emb|CAR37158.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205322083|gb|EDZ09922.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205328182|gb|EDZ14946.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|205331766|gb|EDZ18530.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|205339519|gb|EDZ26283.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|205342665|gb|EDZ29429.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|205350669|gb|EDZ37300.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|206569872|gb|ACI11648.1| cold shock protein CspC [Klebsiella pneumoniae 342]
 gi|206708460|emb|CAR32781.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|208725238|gb|EDZ74945.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4206]
 gi|208730860|gb|EDZ79549.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4045]
 gi|208739435|gb|EDZ87117.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4042]
 gi|209158528|gb|ACI35961.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4115]
 gi|209767848|gb|ACI82236.1| cold shock protein [Escherichia coli]
 gi|209767850|gb|ACI82237.1| cold shock protein [Escherichia coli]
 gi|209767852|gb|ACI82238.1| cold shock protein [Escherichia coli]
 gi|209767854|gb|ACI82239.1| cold shock protein [Escherichia coli]
 gi|209767856|gb|ACI82240.1| cold shock protein [Escherichia coli]
 gi|209912447|dbj|BAG77521.1| cold shock protein [Escherichia coli SE11]
 gi|215265107|emb|CAS09495.1| stress protein, member of the CspA-family [Escherichia coli
          O127:H6 str. E2348/69]
 gi|217318186|gb|EEC26613.1| cold shock protein CspC [Escherichia coli O157:H7 str. TW14588]
 gi|218352118|emb|CAU97855.1| stress protein, member of the CspA-family [Escherichia coli
          55989]
 gi|218356159|emb|CAQ88776.1| stress protein, member of the CspA-family [Escherichia fergusonii
          ATCC 35469]
 gi|218361164|emb|CAQ98747.1| stress protein, member of the CspA-family [Escherichia coli IAI1]
 gi|218365454|emb|CAR03181.1| stress protein, member of the CspA-family [Escherichia coli S88]
 gi|218369594|emb|CAR17363.1| stress protein, member of the CspA-family [Escherichia coli
          IAI39]
 gi|218427323|emb|CAR08218.2| stress protein, member of the CspA-family [Escherichia coli ED1a]
 gi|218432419|emb|CAR13310.1| stress protein, member of the CspA-family [Escherichia coli
          UMN026]
 gi|222033570|emb|CAP76311.1| Cold shock-like protein cspC [Escherichia coli LF82]
 gi|224468200|gb|ACN46030.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|224963876|emb|CAX55379.1| Cold shock-like protein CspC [Erwinia pyrifoliae Ep1/96]
 gi|226900530|gb|EEH86789.1| cold shock protein [Escherichia sp. 3_2_53FAA]
 gi|226907399|gb|EEH93317.1| cold shock-like protein cspC [Citrobacter sp. 30_2]
 gi|227837324|gb|EEJ47790.1| cold shock family protein CspC [Escherichia coli 83972]
 gi|238547716|dbj|BAH64067.1| cold shock-like protein [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
 gi|238863580|gb|ACR65578.1| stress protein, member of the CspA-family [Escherichia coli
          BW2952]
 gi|242377543|emb|CAQ32298.1| stress protein, member of the CspA family; predicted DNA-binding
          transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253324267|gb|ACT28869.1| cold-shock DNA-binding domain protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253973783|gb|ACT39454.1| stress protein, member of the CspA-family [Escherichia coli B
          str. REL606]
 gi|253977977|gb|ACT43647.1| stress protein, member of the CspA-family [Escherichia coli
          BL21(DE3)]
 gi|254592846|gb|ACT72207.1| stress protein, member of the CspA-family [Escherichia coli
          O157:H7 str. TW14359]
 gi|257754332|dbj|BAI25834.1| stress protein CspC [Escherichia coli O26:H11 str. 11368]
 gi|257759315|dbj|BAI30812.1| stress protein CspC [Escherichia coli O103:H2 str. 12009]
 gi|257764699|dbj|BAI36194.1| stress protein CspC [Escherichia coli O111:H- str. 11128]
 gi|259040741|gb|EEW41829.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|260449056|gb|ACX39478.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|261247022|emb|CBG24839.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267993798|gb|ACY88683.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|281178889|dbj|BAI55219.1| cold shock protein [Escherichia coli SE15]
 gi|281600822|gb|ADA73806.1| Cold shock-like protein cspC [Shigella flexneri 2002017]
 gi|283478185|emb|CAY74101.1| Cold shock-like protein cspC (CSP-C) [Erwinia pyrifoliae DSM
          12163]
 gi|284921742|emb|CBG34814.1| cold shock-like protein CspC [Escherichia coli 042]
 gi|288317723|gb|EFC56661.1| conserved domain protein [Enterobacter cancerogenus ATCC 35316]
 gi|288889425|gb|ADC57743.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|289152142|gb|ADC84001.1| cold shock-like protein [Escherichia coli]
 gi|289152144|gb|ADC84002.1| cold shock-like protein [Escherichia coli]
 gi|289152146|gb|ADC84003.1| cold shock-like protein [Escherichia coli]
 gi|289152148|gb|ADC84004.1| cold shock-like protein [Escherichia coli]
 gi|289152150|gb|ADC84005.1| cold shock-like protein [Escherichia coli]
 gi|289152152|gb|ADC84006.1| cold shock-like protein [Escherichia coli]
 gi|289152154|gb|ADC84007.1| cold shock-like protein [Escherichia coli]
 gi|289152156|gb|ADC84008.1| cold shock-like protein [Escherichia coli]
 gi|289152160|gb|ADC84010.1| cold shock-like protein [Escherichia coli]
 gi|289152162|gb|ADC84011.1| cold shock-like protein [Escherichia coli]
 gi|289152164|gb|ADC84012.1| cold shock-like protein [Escherichia coli]
 gi|289152166|gb|ADC84013.1| cold shock-like protein [Escherichia coli]
 gi|289152168|gb|ADC84014.1| cold shock-like protein [Escherichia coli]
 gi|289152170|gb|ADC84015.1| cold shock-like protein [Escherichia coli]
 gi|289152172|gb|ADC84016.1| cold shock-like protein [Escherichia coli]
 gi|289152174|gb|ADC84017.1| cold shock-like protein [Escherichia coli]
 gi|289152176|gb|ADC84018.1| cold shock-like protein [Escherichia coli]
 gi|289152178|gb|ADC84019.1| cold shock-like protein [Escherichia coli]
 gi|289152180|gb|ADC84020.1| cold shock-like protein [Escherichia coli]
 gi|289152182|gb|ADC84021.1| cold shock-like protein [Escherichia coli]
 gi|289152184|gb|ADC84022.1| cold shock-like protein [Escherichia coli]
 gi|289152186|gb|ADC84023.1| cold shock-like protein [Escherichia coli]
 gi|289152188|gb|ADC84024.1| cold shock-like protein [Escherichia coli]
 gi|289152190|gb|ADC84025.1| cold shock-like protein [Escherichia coli]
 gi|289152192|gb|ADC84026.1| cold shock-like protein [Escherichia coli]
 gi|289152194|gb|ADC84027.1| cold shock-like protein [Escherichia coli]
 gi|289152196|gb|ADC84028.1| cold shock-like protein [Escherichia coli]
 gi|289152198|gb|ADC84029.1| cold shock-like protein [Escherichia coli]
 gi|289152200|gb|ADC84030.1| cold shock-like protein [Escherichia coli]
 gi|289152202|gb|ADC84031.1| cold shock-like protein [Escherichia coli]
 gi|289778242|gb|EFD86239.1| cold shock protein CspG [Klebsiella sp. 1_1_55]
 gi|290762877|gb|ADD56838.1| hypothetical protein G2583_2272 [Escherichia coli O55:H7 str.
          CB9615]
 gi|291072468|gb|EFE10577.1| conserved domain protein [Citrobacter youngae ATCC 29220]
 gi|291199525|emb|CBJ46642.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
 gi|291323025|gb|EFE62453.1| cold shock protein CspG [Escherichia coli B088]
 gi|291427527|gb|EFF00554.1| cold shock protein CspG [Escherichia coli FVEC1412]
 gi|291432786|gb|EFF05765.1| cold shock protein CspG [Escherichia coli B185]
 gi|291470599|gb|EFF13083.1| cold shock protein cspC [Escherichia coli B354]
 gi|291553921|emb|CBA20966.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora CFBP1430]
 gi|294492772|gb|ADE91528.1| cold shock protein CspC [Escherichia coli IHE3034]
 gi|295056302|gb|ADF61040.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|295095573|emb|CBK84663.1| Cold shock proteins [Enterobacter cloacae subsp. cloacae NCTC
          9394]
 gi|298278403|gb|EFI19917.1| cold shock-like protein cspC [Escherichia coli FVEC1302]
 gi|299062874|emb|CAX59994.1| cold shock protein [Erwinia billingiae Eb661]
 gi|299881920|gb|EFI90131.1| cold shock protein CspE [Escherichia coli MS 196-1]
 gi|300297519|gb|EFJ53904.1| cold shock protein CspE [Escherichia coli MS 185-1]
 gi|300307364|gb|EFJ61884.1| cold shock protein CspE [Escherichia coli MS 200-1]
 gi|300316550|gb|EFJ66334.1| cold shock protein CspE [Escherichia coli MS 175-1]
 gi|300357308|gb|EFJ73178.1| cold shock protein CspE [Escherichia coli MS 198-1]
 gi|300395440|gb|EFJ78978.1| cold shock protein CspE [Escherichia coli MS 69-1]
 gi|300403385|gb|EFJ86923.1| cold shock protein CspE [Escherichia coli MS 84-1]
 gi|300406355|gb|EFJ89893.1| cold shock protein CspE [Escherichia coli MS 45-1]
 gi|300415174|gb|EFJ98484.1| cold shock protein CspE [Escherichia coli MS 115-1]
 gi|300418941|gb|EFK02252.1| cold shock protein CspE [Escherichia coli MS 182-1]
 gi|300449309|gb|EFK12929.1| cold shock protein CspE [Escherichia coli MS 116-1]
 gi|300456260|gb|EFK19753.1| cold shock protein CspE [Escherichia coli MS 21-1]
 gi|300463140|gb|EFK26633.1| cold shock protein CspE [Escherichia coli MS 187-1]
 gi|300522015|gb|EFK43084.1| cold shock protein CspE [Escherichia coli MS 119-7]
 gi|300530979|gb|EFK52041.1| cold shock protein CspE [Escherichia coli MS 107-1]
 gi|300838848|gb|EFK66608.1| cold shock protein CspE [Escherichia coli MS 124-1]
 gi|300845833|gb|EFK73593.1| cold shock protein CspE [Escherichia coli MS 78-1]
 gi|301076094|gb|EFK90900.1| cold shock protein CspE [Escherichia coli MS 146-1]
 gi|301158361|emb|CBW17860.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|305851578|gb|EFM52031.1| Cold shock-like protein cspC [Escherichia coli NC101]
 gi|306906236|gb|EFN36753.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|307553841|gb|ADN46616.1| cold shock-like protein CspC [Escherichia coli ABU 83972]
 gi|307626698|gb|ADN71002.1| Cold shock-like protein cspC [Escherichia coli UM146]
 gi|308122106|gb|EFO59368.1| cold shock protein CspE [Escherichia coli MS 145-7]
 gi|308748473|gb|ADO48225.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1]
 gi|308923651|gb|EFP69154.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
 gi|310338145|gb|EFQ03234.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|310767829|gb|ADP12779.1| Cold shock-like protein cspC [Erwinia sp. Ejp617]
 gi|312172634|emb|CBX80890.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora ATCC
          BAA-2158]
 gi|312288486|gb|EFR16388.1| cold shock-like protein cspI [Escherichia coli 2362-75]
 gi|312912826|dbj|BAJ36800.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. T000240]
 gi|312946419|gb|ADR27246.1| cold shock-like protein CspC [Escherichia coli O83:H1 str. NRG
          857C]
 gi|313649142|gb|EFS13576.1| cold shock-like protein cspI [Shigella flexneri 2a str. 2457T]
 gi|315061126|gb|ADT75453.1| stress protein, member of the CspA-family [Escherichia coli W]
 gi|315136465|dbj|BAJ43624.1| cold shock-like protein cspC [Escherichia coli DH1]
 gi|315257366|gb|EFU37334.1| cold shock protein CspE [Escherichia coli MS 85-1]
 gi|315286527|gb|EFU45962.1| cold shock protein CspE [Escherichia coli MS 110-3]
 gi|315290383|gb|EFU49759.1| cold shock protein CspE [Escherichia coli MS 153-1]
 gi|315299954|gb|EFU59192.1| cold shock protein CspE [Escherichia coli MS 16-3]
 gi|316950076|gb|ADU69551.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
 gi|320085656|emb|CBY95434.1| Cold shock-like protein cspE CSP-E [Salmonella enterica subsp.
          enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|320173186|gb|EFW48398.1| Cold shock protein CspC [Shigella dysenteriae CDC 74-1112]
 gi|320181137|gb|EFW56056.1| Cold shock protein CspC [Shigella boydii ATCC 9905]
 gi|320185016|gb|EFW59797.1| Cold shock protein CspC [Shigella flexneri CDC 796-83]
 gi|320188522|gb|EFW63184.1| Cold shock protein CspC [Escherichia coli O157:H7 str. EC1212]
 gi|320194464|gb|EFW69095.1| Cold shock protein CspC [Escherichia coli WV_060327]
 gi|320198003|gb|EFW72611.1| Cold shock protein CspC [Escherichia coli EC4100B]
 gi|320641674|gb|EFX11062.1| cold shock-like protein cspc [Escherichia coli O157:H7 str.
          G5101]
 gi|320647033|gb|EFX15866.1| cold shock-like protein cspc [Escherichia coli O157:H- str.
          493-89]
 gi|320652316|gb|EFX20614.1| cold shock-like protein cspc [Escherichia coli O157:H- str. H
          2687]
 gi|320657918|gb|EFX25680.1| cold shock-like protein cspc [Escherichia coli O55:H7 str.
          3256-97 TW 07815]
 gi|320658491|gb|EFX26185.1| cold shock-like protein cspc [Escherichia coli O55:H7 str. USDA
          5905]
 gi|320668389|gb|EFX35216.1| cold shock-like protein cspc [Escherichia coli O157:H7 str.
          LSU-61]
 gi|321224470|gb|EFX49533.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322616832|gb|EFY13740.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315996572]
 gi|322618071|gb|EFY14963.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-1]
 gi|322625742|gb|EFY22561.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-3]
 gi|322626192|gb|EFY23002.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-4]
 gi|322633798|gb|EFY30538.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-1]
 gi|322638952|gb|EFY35645.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-2]
 gi|322640770|gb|EFY37420.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 531954]
 gi|322644157|gb|EFY40702.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. NC_MB110209-0054]
 gi|322649229|gb|EFY45667.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. OH_2009072675]
 gi|322655388|gb|EFY51696.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. CASC_09SCPH15965]
 gi|322660856|gb|EFY57087.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 19N]
 gi|322662847|gb|EFY59054.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 81038-01]
 gi|322668031|gb|EFY64190.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. MD_MDA09249507]
 gi|322674207|gb|EFY70301.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 414877]
 gi|322675438|gb|EFY71512.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 366867]
 gi|322683147|gb|EFY79163.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 413180]
 gi|322686841|gb|EFY82819.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 446600]
 gi|322714876|gb|EFZ06447.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
 gi|323130112|gb|ADX17542.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
 gi|323152935|gb|EFZ39204.1| cold shock-like protein cspI [Escherichia coli EPECa14]
 gi|323175099|gb|EFZ60713.1| cold shock-like protein cspI [Escherichia coli LT-68]
 gi|323180603|gb|EFZ66148.1| cold shock-like protein cspI [Escherichia coli 1180]
 gi|323186429|gb|EFZ71777.1| cold shock-like protein cspI [Escherichia coli 1357]
 gi|323186827|gb|EFZ72146.1| cold shock-like protein cspI [Escherichia coli RN587/1]
 gi|323195267|gb|EFZ80447.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609458-1]
 gi|323199160|gb|EFZ84255.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556150-1]
 gi|323203311|gb|EFZ88338.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609460]
 gi|323207416|gb|EFZ92364.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 507440-20]
 gi|323213768|gb|EFZ98550.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556152]
 gi|323217399|gb|EGA02118.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB101509-0077]
 gi|323223230|gb|EGA07571.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB102109-0047]
 gi|323224674|gb|EGA08947.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
 gi|323231422|gb|EGA15535.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB111609-0052]
 gi|323235862|gb|EGA19941.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009083312]
 gi|323240431|gb|EGA24474.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009085258]
 gi|323245324|gb|EGA29324.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315731156]
 gi|323246691|gb|EGA30663.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2009159199]
 gi|323253546|gb|EGA37374.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008282]
 gi|323258076|gb|EGA41754.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008283]
 gi|323259373|gb|EGA43012.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008284]
 gi|323266797|gb|EGA50283.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008285]
 gi|323269003|gb|EGA52459.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008287]
 gi|323378298|gb|ADX50566.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323937081|gb|EGB33361.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1520]
 gi|323940511|gb|EGB36702.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323948292|gb|EGB44280.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323952324|gb|EGB48197.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H252]
 gi|323956452|gb|EGB52194.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H263]
 gi|323961877|gb|EGB57476.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H489]
 gi|323968590|gb|EGB63996.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli M863]
 gi|323972670|gb|EGB67873.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|323977994|gb|EGB73080.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TW10509]
 gi|324007189|gb|EGB76408.1| cold shock protein CspE [Escherichia coli MS 57-2]
 gi|324011600|gb|EGB80819.1| cold shock protein CspE [Escherichia coli MS 60-1]
 gi|324018044|gb|EGB87263.1| cold shock protein CspE [Escherichia coli MS 117-3]
 gi|324113559|gb|EGC07534.1| cold-shock DNA-binding domain-containing protein [Escherichia
          fergusonii B253]
 gi|324118883|gb|EGC12772.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1167]
 gi|325497031|gb|EGC94890.1| cold shock-like protein CspC [Escherichia fergusonii ECD227]
 gi|326342201|gb|EGD65982.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1044]
 gi|326343751|gb|EGD67513.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1125]
 gi|326627557|gb|EGE33900.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
 gi|327252944|gb|EGE64598.1| cold shock-like protein cspI [Escherichia coli STEC_7v]
 gi|328537175|gb|EGF63445.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
 gi|330911630|gb|EGH40140.1| cold shock protein CspC [Escherichia coli AA86]
 gi|331039231|gb|EGI11451.1| conserved domain protein [Escherichia coli H736]
 gi|331044102|gb|EGI16238.1| conserved domain protein [Escherichia coli M605]
 gi|331049326|gb|EGI21398.1| conserved domain protein [Escherichia coli M718]
 gi|331056115|gb|EGI28124.1| conserved domain protein [Escherichia coli TA206]
 gi|331059112|gb|EGI31089.1| conserved domain protein [Escherichia coli TA143]
 gi|331063708|gb|EGI35619.1| conserved domain protein [Escherichia coli TA271]
 gi|331069553|gb|EGI40940.1| conserved domain protein [Escherichia coli TA280]
 gi|331074160|gb|EGI45480.1| conserved domain protein [Escherichia coli H591]
 gi|331079540|gb|EGI50737.1| conserved domain protein [Escherichia coli H299]
 gi|332089944|gb|EGI95044.1| cold shock-like protein cspI [Shigella boydii 5216-82]
 gi|332093283|gb|EGI98342.1| cold shock-like protein cspI [Shigella dysenteriae 155-74]
 gi|332096604|gb|EGJ01598.1| cold shock-like protein cspI [Shigella boydii 3594-74]
 gi|332101377|gb|EGJ04723.1| cold shock protein [Shigella sp. D9]
 gi|332343548|gb|AEE56882.1| cold shock-like protein CspI [Escherichia coli UMNK88]
 gi|332760591|gb|EGJ90880.1| cold shock-like protein cspI [Shigella flexneri 2747-71]
 gi|332762433|gb|EGJ92698.1| cold shock-like protein cspI [Shigella flexneri 4343-70]
 gi|332762911|gb|EGJ93165.1| cold shock-like protein cspI [Shigella flexneri K-671]
 gi|332767108|gb|EGJ97303.1| cold shock protein [Shigella flexneri 2930-71]
 gi|332988724|gb|AEF07707.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
 gi|333003646|gb|EGK23182.1| cold shock-like protein cspI [Shigella flexneri VA-6]
 gi|333004280|gb|EGK23811.1| cold shock-like protein cspI [Shigella flexneri K-218]
 gi|333006745|gb|EGK26242.1| cold shock-like protein cspI [Shigella flexneri K-272]
 gi|333018379|gb|EGK37678.1| cold shock-like protein cspI [Shigella flexneri K-304]
 gi|333018661|gb|EGK37954.1| cold shock-like protein cspI [Shigella flexneri K-227]
          Length = 69

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60


>gi|160878802|ref|YP_001557770.1| cold-shock DNA-binding domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160427468|gb|ABX41031.1| cold-shock DNA-binding domain protein [Clostridium
          phytofermentans ISDg]
          Length = 66

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N  KG+GF+    S E G+DVF+H SA+   G   L EG+ V ++ V+ +
Sbjct: 1  MKKGTVKWFNAKKGFGFL----SDEEGNDVFVHFSALNMDGFKVLEEGEAVAFEVVEGE 55


>gi|89076141|ref|ZP_01162499.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|89048151|gb|EAR53735.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
          Length = 69

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ V +D  Q
Sbjct: 6  GIVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVAFDIEQ 56


>gi|330446014|ref|ZP_08309666.1| cold-shock domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328490205|dbj|GAA04163.1| cold-shock domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 69

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+   G  +L EGQ V++D  Q
Sbjct: 6  GIVKWFNDEKGFGFITQD---NGGADVFVHFRAITGEGFKSLKEGQKVSFDVEQ 56


>gi|116695961|ref|YP_841537.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|113530460|emb|CAJ96807.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
          Length = 67

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KGYGFITP+   + G D+F H S +   G  +L EG  V ++  Q
Sbjct: 4  GIVKWFNSEKGYGFITPD---DGGKDLFAHHSEIQGTGFKSLEEGARVEFEVTQ 54


>gi|239997241|ref|ZP_04717765.1| putative cold shock-like protein cspG [Alteromonas macleodii ATCC
          27126]
 gi|332142943|ref|YP_004428681.1| putative cold shock-like protein cspG [Alteromonas macleodii str.
          'Deep ecotype']
 gi|332143012|ref|YP_004428750.1| putative cold shock-like protein cspG [Alteromonas macleodii str.
          'Deep ecotype']
 gi|327552965|gb|AEA99683.1| putative cold shock-like protein cspG [Alteromonas macleodii str.
          'Deep ecotype']
 gi|327553034|gb|AEA99752.1| putative cold shock-like protein cspG [Alteromonas macleodii str.
          'Deep ecotype']
          Length = 69

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N DKGYGF+T +     G DVF+H  A+ S G   L EGQ V ++
Sbjct: 6  GTVKWFNADKGYGFLTQD---NGGKDVFVHFRAIISDGYKTLPEGQRVEFE 53


>gi|330950615|gb|EGH50875.1| cold-shock protein [Pseudomonas syringae Cit 7]
          Length = 202

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 191 QAEDVIAALPR 201


>gi|330896121|gb|EGH28342.1| cold-shock protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 202

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 191 QAEDVIAALPR 201


>gi|312138714|ref|YP_004006050.1| cold shock protein [Rhodococcus equi 103S]
 gi|311888053|emb|CBH47365.1| cold shock protein [Rhodococcus equi 103S]
          Length = 67

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI PE   +   DVF H S +   G  +L E Q V+YD  Q
Sbjct: 4  GTVKWFNAEKGFGFIAPE---DGSADVFAHYSEIQGGGFRSLDENQRVSYDLGQ 54


>gi|284103679|ref|ZP_06386113.1| cold shock protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283830241|gb|EFC34486.1| cold shock protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 76

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  EG      DVF+H SA+   G   L EG+ V +D V+  A G 
Sbjct: 7  GTVKWFNDRKGFGFIRVEGE----QDVFVHYSALQGEGFKTLKEGEPVEFDLVEG-AKGP 61

Query: 65 YSAENLK 71
           +A  +K
Sbjct: 62 QAANVVK 68


>gi|323529334|ref|YP_004231486.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1001]
 gi|323386336|gb|ADX58426.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 67

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + GDD+F H S + + G   L E Q V+++  Q
Sbjct: 4  GTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRADGFKTLAENQKVSFETKQ 54


>gi|260769456|ref|ZP_05878389.1| cold shock protein CspE [Vibrio furnissii CIP 102972]
 gi|260614794|gb|EEX39980.1| cold shock protein CspE [Vibrio furnissii CIP 102972]
 gi|315181988|gb|ADT88901.1| cold shock DNA-binding domain-containing protein [Vibrio
          furnissii NCTC 11218]
          Length = 69

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V +   Q     +
Sbjct: 7  GTVKWFNETKGFGFI----KQENGPDVFAHFSAIQGDGFRTLAEGQKVEFVITQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AE++KL+
Sbjct: 63 --AESIKLL 69


>gi|257487017|ref|ZP_05641058.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|298488215|ref|ZP_07006251.1| DNA-binding cold-shock protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157273|gb|EFH98357.1| DNA-binding cold-shock protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330988962|gb|EGH87065.1| cold-shock protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 202

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 191 QAEDVIAALPR 201


>gi|167034611|ref|YP_001669842.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida GB-1]
 gi|166861099|gb|ABY99506.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
          Length = 84

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G TE   D+F H SA+   G   L  GQ VT++ +Q
Sbjct: 4  GKVKWFNNAKGYGFINEDGGTE---DLFAHYSAIQMDGYKTLKAGQAVTFNIIQ 54


>gi|13488214|ref|NP_085668.1| cold-shock protein [Mesorhizobium loti MAFF303099]
 gi|14027917|dbj|BAB54509.1| cold-shock protein [Mesorhizobium loti MAFF303099]
          Length = 97

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 3/48 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          G++KWY P+KG+GFI P+   +   DVF+H S +  +GL  L EGQ V
Sbjct: 33 GTVKWYKPEKGFGFIAPDNGEK---DVFVHASTLTRSGLSALVEGQKV 77


>gi|225377225|ref|ZP_03754446.1| hypothetical protein ROSEINA2194_02871 [Roseburia inulinivorans
          DSM 16841]
 gi|225210929|gb|EEG93283.1| hypothetical protein ROSEINA2194_02871 [Roseburia inulinivorans
          DSM 16841]
          Length = 67

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +++G++KW+N  KGYGFI    S E G+DVF+H S +   G  +L EG  V ++ V+
Sbjct: 1  MNKGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMEGFKSLEEGAAVEFEVVE 53


>gi|254504340|ref|ZP_05116491.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
 gi|222440411|gb|EEE47090.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
          Length = 70

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 5/74 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+IK++N D+G+GFITPE     G DVF+H +A   AG+    EG  V++   ++D
Sbjct: 1  MRENGTIKFFNHDRGFGFITPE---NGGKDVFVHVTAFEQAGIGTPVEGAKVSF-VAEDD 56

Query: 61 ANGK-YSAENLKLV 73
            G+   A  L+L+
Sbjct: 57 RRGRGKQAAQLELL 70


>gi|156394304|ref|XP_001636766.1| predicted protein [Nematostella vectensis]
 gi|156223872|gb|EDO44703.1| predicted protein [Nematostella vectensis]
          Length = 671

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS+KW+N  KG+GFIT +   + G+DVF+H+SA+ ++G  +L EG+ V    + N   GK
Sbjct: 485 GSVKWFNLIKGFGFITRD---DGGEDVFVHQSAIKASGYRSLEEGEHVQLT-ISNSDKGK 540


>gi|320449142|ref|YP_004201238.1| cold shock protein, CSD family [Thermus scotoductus SA-01]
 gi|320149311|gb|ADW20689.1| cold shock protein, CSD family [Thermus scotoductus SA-01]
          Length = 68

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N +KGYGFI      E G DVF+H +A+ + G   L EG  V ++
Sbjct: 1  MKKGTVKWFNAEKGYGFI----QQEEGPDVFVHFTAIEAEGFRTLNEGDRVEFE 50


>gi|223932623|ref|ZP_03624623.1| cold-shock DNA-binding domain protein [Streptococcus suis
          89/1591]
 gi|302023415|ref|ZP_07248626.1| cold shock protein [Streptococcus suis 05HAS68]
 gi|330832233|ref|YP_004401058.1| cold-shock DNA-binding domain-containing protein [Streptococcus
          suis ST3]
 gi|223898733|gb|EEF65094.1| cold-shock DNA-binding domain protein [Streptococcus suis
          89/1591]
 gi|329306456|gb|AEB80872.1| cold-shock DNA-binding domain protein [Streptococcus suis ST3]
          Length = 67

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI    + E+G DVF H S + S    +L EGQ VT++  Q
Sbjct: 3  QGTVKWFNAEKGFGFI----AQENGPDVFAHFSEIQSNSFKSLEEGQKVTFEVEQ 53


>gi|45441055|ref|NP_992594.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
          91001]
 gi|51595732|ref|YP_069923.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953]
 gi|108806653|ref|YP_650569.1| cold shock-like protein [Yersinia pestis Antiqua]
 gi|108812775|ref|YP_648542.1| cold shock-like protein [Yersinia pestis Nepal516]
 gi|145599602|ref|YP_001163678.1| cold shock-like protein [Yersinia pestis Pestoides F]
 gi|149366623|ref|ZP_01888657.1| cold shock-like protein [Yersinia pestis CA88-4125]
 gi|153950801|ref|YP_001401574.1| cold shock domain-containing protein CspD [Yersinia
          pseudotuberculosis IP 31758]
 gi|162421201|ref|YP_001606104.1| cold shock domain-containing protein CspD [Yersinia pestis
          Angola]
 gi|165924529|ref|ZP_02220361.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165938992|ref|ZP_02227545.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|166009852|ref|ZP_02230750.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
          str. E1979001]
 gi|166211633|ref|ZP_02237668.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
          str. B42003004]
 gi|167399962|ref|ZP_02305480.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
          str. UG05-0454]
 gi|167419873|ref|ZP_02311626.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167424253|ref|ZP_02316006.1| cold shock domain protein CspD [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|167469765|ref|ZP_02334469.1| cold shock domain protein CspD [Yersinia pestis FV-1]
 gi|170024919|ref|YP_001721424.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186894809|ref|YP_001871921.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|218928514|ref|YP_002346389.1| cold shock-like protein [Yersinia pestis CO92]
 gi|229841332|ref|ZP_04461491.1| cold shock-like protein [Yersinia pestis biovar Orientalis str.
          PEXU2]
 gi|229843436|ref|ZP_04463582.1| cold shock-like protein [Yersinia pestis biovar Orientalis str.
          India 195]
 gi|229895809|ref|ZP_04510979.1| cold shock-like protein [Yersinia pestis Pestoides A]
 gi|229903189|ref|ZP_04518302.1| cold shock-like protein [Yersinia pestis Nepal516]
 gi|270486982|ref|ZP_06204056.1| cold shock domain protein CspD [Yersinia pestis KIM D27]
 gi|45435914|gb|AAS61471.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
          91001]
 gi|51589014|emb|CAH20632.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953]
 gi|108776423|gb|ABG18942.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108778566|gb|ABG12624.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
 gi|115347125|emb|CAL20018.1| cold shock-like protein [Yersinia pestis CO92]
 gi|145211298|gb|ABP40705.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|149290997|gb|EDM41072.1| cold shock-like protein [Yersinia pestis CA88-4125]
 gi|152962296|gb|ABS49757.1| cold shock domain protein CspD [Yersinia pseudotuberculosis IP
          31758]
 gi|162354016|gb|ABX87964.1| cold shock domain protein CspD [Yersinia pestis Angola]
 gi|165913139|gb|EDR31763.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|165923589|gb|EDR40721.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165991248|gb|EDR43549.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
          str. E1979001]
 gi|166207404|gb|EDR51884.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
          str. B42003004]
 gi|166962614|gb|EDR58635.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167050670|gb|EDR62078.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
          str. UG05-0454]
 gi|167057102|gb|EDR66865.1| cold shock domain protein CspD [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169751453|gb|ACA68971.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186697835|gb|ACC88464.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229678959|gb|EEO75062.1| cold shock-like protein [Yersinia pestis Nepal516]
 gi|229689783|gb|EEO81844.1| cold shock-like protein [Yersinia pestis biovar Orientalis str.
          India 195]
 gi|229697698|gb|EEO87745.1| cold shock-like protein [Yersinia pestis biovar Orientalis str.
          PEXU2]
 gi|229700732|gb|EEO88761.1| cold shock-like protein [Yersinia pestis Pestoides A]
 gi|270335486|gb|EFA46263.1| cold shock domain protein CspD [Yersinia pestis KIM D27]
 gi|320015779|gb|ADV99350.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin
          35]
          Length = 87

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQIVNFD 51


>gi|262368477|ref|ZP_06061806.1| cold shock protein [Acinetobacter johnsonii SH046]
 gi|262316155|gb|EEY97193.1| cold shock protein [Acinetobacter johnsonii SH046]
          Length = 69

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      ESG DVF H   +AS+G   L EGQ V++   Q
Sbjct: 7  GTVKWFNETKGFGFI----QQESGPDVFAHFREIASSGFKTLHEGQQVSFSIEQ 56


>gi|206890727|ref|YP_002249771.1| hypothetical protein THEYE_A1982 [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206742665|gb|ACI21722.1| conserved domain protein [Thermodesulfovibrio yellowstonii DSM
          11347]
          Length = 67

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N  KG+GFI  +G    G DVF+H +++   G   L +G  V +D V+ D
Sbjct: 1  MAFEGRVKWFNESKGFGFIQQDG----GQDVFVHYTSIKGDGFKTLKQGDRVKFDVVEGD 56


>gi|291615935|ref|YP_003518677.1| CspB [Pantoea ananatis LMG 20103]
 gi|291150965|gb|ADD75549.1| CspB [Pantoea ananatis LMG 20103]
 gi|327396192|dbj|BAK13614.1| cold shock-like protein CspB [Pantoea ananatis AJ13355]
          Length = 79

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N DKG+GFI+P+  ++   DVF+H SA+ S+    L EGQ V +
Sbjct: 16 GLVKWFNADKGFGFISPQDGSK---DVFVHFSAIQSSDFKTLDEGQKVEF 62


>gi|126664621|ref|ZP_01735605.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
          ELB17]
 gi|126630947|gb|EBA01561.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
          ELB17]
          Length = 68

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFIT EG    G DVF+H SA+   G   L EGQ V +   Q     +
Sbjct: 6  GTVKFFNEAKGFGFITREG----GPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKGPQ 61

Query: 65 YSAENL 70
            AEN+
Sbjct: 62 --AENV 65


>gi|332187878|ref|ZP_08389611.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
 gi|332012039|gb|EGI54111.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
          Length = 284

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +K++N  KG+GF+  +   + G+DVF+H SAV  AGL  L EGQ + +  V  D  G+
Sbjct: 106 GVVKFFNAQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLGFTLV--DRGGR 160

Query: 65  YSAENLKL 72
            SA  LK+
Sbjct: 161 ISATELKI 168



 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 4/67 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AG+ +L EG  + ++ ++ D  GK
Sbjct: 219 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMGSLNEGDRLQFE-IEVDRRGK 274

Query: 65  YSAENLK 71
           Y+A NL+
Sbjct: 275 YAAVNLQ 281


>gi|317123476|ref|YP_004097588.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
 gi|315587564|gb|ADU46861.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
          Length = 67

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI  +G    G DVF+H SA+ S G  +L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAIQSNGYRSLDEAQRVEFEVTQ 54


>gi|312962766|ref|ZP_07777254.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
           fluorescens WH6]
 gi|311282983|gb|EFQ61576.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
           fluorescens WH6]
          Length = 200

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 134 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 188

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 189 QAEDVIAALPR 199


>gi|148266031|ref|YP_001232737.1| cold-shock DNA-binding domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146399531|gb|ABQ28164.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
          Rf4]
          Length = 66

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 5/63 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GF+      E+G+DVF+H SA+   G  +L EG  VT+D V N   G 
Sbjct: 4  GTVKWFNDSKGFGFL----EQENGEDVFVHFSAITGDGFKSLAEGDRVTFD-VTNGPKGL 58

Query: 65 YSA 67
           +A
Sbjct: 59 QAA 61


>gi|330959259|gb|EGH59519.1| cold-shock protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 189

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 123 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 177

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 178 QAEDVIAALPR 188


>gi|288918913|ref|ZP_06413256.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
 gi|288349665|gb|EFC83899.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
          Length = 67

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KG+GFI+ +G    G DVF+H SA+   G   L EGQ V +   Q 
Sbjct: 3  QGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIVMDGYKALEEGQRVEFQVTQG 55


>gi|228990213|ref|ZP_04150183.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
 gi|228996304|ref|ZP_04155949.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|229003971|ref|ZP_04161777.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
 gi|228757340|gb|EEM06579.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
 gi|228763496|gb|EEM12398.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|228769576|gb|EEM18169.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
          Length = 67

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G    G+DVF+H SA+ + G  +L EG+ V+++    D
Sbjct: 1  MTVTGQVKWFNNEKGFGFIEVPG----GNDVFVHFSAITTEGFKSLEEGEKVSFEI--ED 54

Query: 61 ANGKYSAENL 70
           N    A+N+
Sbjct: 55 GNRGPQAKNV 64


>gi|119476170|ref|ZP_01616522.1| CspA-like protein [marine gamma proteobacterium HTCC2143]
 gi|119450797|gb|EAW32031.1| CspA-like protein [marine gamma proteobacterium HTCC2143]
          Length = 91

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          +  G++KW+N  KG+GFI PEG    G DVF H S ++  G   L  GQ V++D V
Sbjct: 1  MQTGTVKWFNNAKGFGFILPEG---GGADVFAHYSTISMDGYKTLKAGQPVSFDTV 53


>gi|91775760|ref|YP_545516.1| cold-shock DNA-binding protein family protein [Methylobacillus
          flagellatus KT]
 gi|91709747|gb|ABE49675.1| cold-shock DNA-binding protein family [Methylobacillus
          flagellatus KT]
          Length = 67

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI+P+   E GDD+F H S + ++G  +L E   V ++  Q  A GK
Sbjct: 4  GTVKWFNDAKGFGFISPD---EGGDDLFAHFSEIQTSGYKSLKENDRVQFEITQT-AKGK 59

Query: 65 YSA 67
           ++
Sbjct: 60 QAS 62


>gi|70732095|ref|YP_261851.1| cold-shock domain-contain protein [Pseudomonas fluorescens Pf-5]
 gi|68346394|gb|AAY94000.1| cold-shock domain family protein [Pseudomonas fluorescens Pf-5]
          Length = 201

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 135 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 189

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 190 QAEDVIAALPR 200


>gi|89075964|ref|ZP_01162336.1| cold shock protein [Photobacterium sp. SKA34]
 gi|90581356|ref|ZP_01237152.1| cold shock protein [Vibrio angustum S14]
 gi|89048313|gb|EAR53892.1| cold shock protein [Photobacterium sp. SKA34]
 gi|90437466|gb|EAS62661.1| cold shock protein [Vibrio angustum S14]
          Length = 68

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFI    S   G DVF+H SA+ + G   L EGQ V +  V +   G 
Sbjct: 6  GTVKWFNDDKGFGFI----SGTDGKDVFVHFSAIQAQGRRTLREGQSVEF-IVTDGQKGP 60

Query: 65 YSAENLKL 72
           ++E + L
Sbjct: 61 QASEVIAL 68


>gi|325676595|ref|ZP_08156273.1| cold shock transcription regulator protein [Rhodococcus equi ATCC
          33707]
 gi|325552773|gb|EGD22457.1| cold shock transcription regulator protein [Rhodococcus equi ATCC
          33707]
          Length = 98

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI PE  +    DVF H S +   G  +L E Q V+YD  Q
Sbjct: 35 GTVKWFNAEKGFGFIAPEDGSA---DVFAHYSEIQGGGFRSLDENQRVSYDLGQ 85


>gi|125602074|gb|EAZ41399.1| hypothetical protein OsJ_25920 [Oryza sativa Japonica Group]
          Length = 238

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 46/67 (68%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KG+GFITP+   + G+D+F+H+S++ S G  +L +G +V +  V +  +G
Sbjct: 7  KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEFS-VGSGNDG 62

Query: 64 KYSAENL 70
          +  A N+
Sbjct: 63 RTKAVNV 69


>gi|95929691|ref|ZP_01312433.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
 gi|95134388|gb|EAT16045.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
          Length = 66

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      ++G DVF+H SA+ S G  +L EG  V++D V     G
Sbjct: 3  EGTVKWFNDTKGFGFI----EQDNGPDVFVHFSAIQSEGFKSLAEGDRVSFD-VTEGQKG 57

Query: 64 KYSAENLKL 72
            SA   K+
Sbjct: 58 PQSANVCKI 66


>gi|302870196|ref|YP_003838833.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
 gi|315503526|ref|YP_004082413.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|330470396|ref|YP_004408139.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
 gi|302573055|gb|ADL49257.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
          27029]
 gi|315410145|gb|ADU08262.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|328813367|gb|AEB47539.1| cold-shock DNA-binding domain protein [Verrucosispora maris
          AB-18-032]
          Length = 67

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L +GQ V ++  Q     
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GQDVFVHFSAIEMDGYKALDDGQRVEFEIAQGQKGP 58

Query: 64 KYSAENLKLVP 74
          +  AE ++++ 
Sbjct: 59 Q--AERVRVIA 67


>gi|271967211|ref|YP_003341407.1| cold-shock DNA-binding domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270510386|gb|ACZ88664.1| putative cold-shock DNA-binding domain protein [Streptosporangium
          roseum DSM 43021]
          Length = 67

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N +KG+GFI P+  T    DVF+H SA+ S G   L E Q V++   Q
Sbjct: 1  MSEGTVKWFNAEKGFGFIAPDDGTA---DVFVHYSAINSGGYRTLEENQRVSFTTTQ 54


>gi|89053585|ref|YP_509036.1| cold-shock DNA-binding protein family protein [Jannaschia sp.
          CCS1]
 gi|88863134|gb|ABD54011.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1]
          Length = 68

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G DVF+H SAV  AG  +L +   +TY+ ++   +G+
Sbjct: 4  GTVKWFNTTKGFGFIAPD---DGGKDVFVHISAVERAGWSDLPDDTKLTYE-LREGRDGR 59

Query: 65 YSAENL 70
           SA  L
Sbjct: 60 ESAVEL 65


>gi|152997616|ref|YP_001342451.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
          MWYL1]
 gi|150838540|gb|ABR72516.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
          MWYL1]
          Length = 70

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  EG    G DVF+H  ++  +G   L EGQ VT++  Q     +
Sbjct: 8  GIVKWFNDEKGFGFIEREG----GPDVFVHFRSINGSGRRTLQEGQKVTFEVTQGQKGPQ 63

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 64 --AENVTPV 70


>gi|315123024|ref|YP_004065030.1| cold shock protein [Pseudoalteromonas sp. SM9913]
 gi|315016784|gb|ADT70121.1| cold shock protein [Pseudoalteromonas sp. SM9913]
          Length = 69

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      E+G DVF H SA+ S G   L EGQ V +   Q
Sbjct: 7  GTVKWFNESKGFGFI----EQENGPDVFAHFSAIKSEGFKTLAEGQRVEFTLSQ 56


>gi|184200633|ref|YP_001854840.1| cold shock protein [Kocuria rhizophila DC2201]
 gi|183580863|dbj|BAG29334.1| cold shock protein [Kocuria rhizophila DC2201]
          Length = 67

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFITP+   ++  DVF+H S + S G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFITPD---DADGDVFVHYSEIQSGGFRTLEENQRVEFEIGQ 54


>gi|149276323|ref|ZP_01882467.1| stress protein, member of the CspA-family [Pedobacter sp. BAL39]
 gi|149232843|gb|EDM38218.1| stress protein, member of the CspA-family [Pedobacter sp. BAL39]
          Length = 68

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N  KG+GFITPE     G D+F+H SA+A      L EG  V ++   ND
Sbjct: 1  MRTTGKVKWFNSAKGFGFITPE---NGGKDIFVHFSAIAGDSFRELNEGDSVEFEL--ND 55

Query: 61 ANGKYSAENLKLV 73
                A N+ ++
Sbjct: 56 GKKGPEAANVTVL 68


>gi|260494795|ref|ZP_05814925.1| cold shock domain-containing protein CspD [Fusobacterium sp.
          3_1_33]
 gi|260197957|gb|EEW95474.1| cold shock domain-containing protein CspD [Fusobacterium sp.
          3_1_33]
          Length = 71

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ V ++  +
Sbjct: 7  KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVEFEITE 57


>gi|224367563|ref|YP_002601726.1| CspL [Desulfobacterium autotrophicum HRM2]
 gi|223690279|gb|ACN13562.1| CspL [Desulfobacterium autotrophicum HRM2]
          Length = 66

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW++  KG+GFI      + G+DVF+H +A+   G   L+EG+ V++D   ND
Sbjct: 3  QGTVKWFSDKKGFGFI----EQDEGNDVFVHHTAIDMPGFKTLSEGERVSFDIEDND 55


>gi|209520011|ref|ZP_03268789.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295676690|ref|YP_003605214.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|209499550|gb|EDZ99627.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295436533|gb|ADG15703.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
          Length = 67

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G+D+F H S + + G  +L E Q V+++ ++    GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRTEGFKSLQENQKVSFE-IKQGPKGK 59

Query: 65 YSAE 68
           +A+
Sbjct: 60 QAAD 63


>gi|160938316|ref|ZP_02085671.1| hypothetical protein CLOBOL_03212 [Clostridium bolteae ATCC
          BAA-613]
 gi|158438689|gb|EDP16446.1| hypothetical protein CLOBOL_03212 [Clostridium bolteae ATCC
          BAA-613]
          Length = 65

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI    S E G+DVF+H S +   G  +L EG  V +D V N A G
Sbjct: 2  KGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLDEGAEVEFDVV-NGAKG 56

Query: 64 KYSAENLKL 72
            +    KL
Sbjct: 57 PQATNVTKL 65


>gi|147791391|emb|CAN59784.1| hypothetical protein VITISV_042163 [Vitis vinifera]
          Length = 247

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 3/53 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G ++W++  KG+GFITP    E G+D+F+H+S++ S G  +L EG+ V +  V
Sbjct: 8  GVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIV 57


>gi|77362000|ref|YP_341574.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125]
 gi|119470716|ref|ZP_01613384.1| Cold shock protein [Alteromonadales bacterium TW-7]
 gi|332533004|ref|ZP_08408874.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505]
 gi|76876911|emb|CAI89128.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125]
 gi|119446186|gb|EAW27464.1| Cold shock protein [Alteromonadales bacterium TW-7]
 gi|332037483|gb|EGI73936.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505]
          Length = 69

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      E+G DVF H SA+ S G   L EGQ V +   Q
Sbjct: 7  GTVKWFNESKGFGFI----EQENGPDVFAHFSAIKSEGFKTLAEGQRVEFTLSQ 56


>gi|330811400|ref|YP_004355862.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379508|gb|AEA70858.1| Putative transcription factor, Csd family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 201

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 135 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 189

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 190 QAEDVIAALPR 200


>gi|322436156|ref|YP_004218368.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321163883|gb|ADW69588.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 92

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G + W++  KG+GF++ +G    G DVF+H SA+ + G  +L EG+ V++D VQ D  G 
Sbjct: 6  GKVMWFSNAKGFGFLSRDG----GADVFVHFSAIVNDGYKSLAEGEDVSFDVVQGD-KGP 60

Query: 65 YSAENLKLVPKSSN 78
           +AE  ++V  S+ 
Sbjct: 61 QAAEVRRVVMGSTQ 74


>gi|262377343|ref|ZP_06070567.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
 gi|262307796|gb|EEY88935.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
          Length = 69

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      ESG DVF H S +  +G   L EGQ V++   Q
Sbjct: 7  GTVKWFNETKGFGFI----QQESGPDVFAHFSEITGSGFKTLVEGQKVSFSVAQ 56


>gi|163801254|ref|ZP_02195153.1| cold shock transcriptional regulator CspA [Vibrio sp. AND4]
 gi|159174743|gb|EDP59543.1| cold shock transcriptional regulator CspA [Vibrio sp. AND4]
          Length = 69

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          GS+KW+N  KG+GF+T +   + G DVF+H +A+ S G   L EGQ V++
Sbjct: 6  GSVKWFNESKGFGFLTQD---DGGKDVFVHFNAIVSDGFKTLAEGQKVSF 52


>gi|119469529|ref|ZP_01612433.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Alteromonadales bacterium
          TW-7]
 gi|119447064|gb|EAW28334.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Alteromonadales bacterium
          TW-7]
          Length = 67

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M   G +K++N  KG+GFI      E+G DVF+H SA++ +G   L+EGQ VT+   Q
Sbjct: 1  MSVSGKVKFFNEAKGFGFI----EQENGPDVFVHFSAISGSGFRTLSEGQAVTFSIKQ 54


>gi|19703863|ref|NP_603425.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC
          25586]
 gi|254304125|ref|ZP_04971483.1| cold shock protein CspC [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
 gi|256844890|ref|ZP_05550348.1| cold shock domain-containing protein CspD [Fusobacterium sp.
          3_1_36A2]
 gi|294785827|ref|ZP_06751115.1| cold shock protein [Fusobacterium sp. 3_1_27]
 gi|296329383|ref|ZP_06871883.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC
          23726]
 gi|19714023|gb|AAL94724.1| Cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC
          25586]
 gi|148324317|gb|EDK89567.1| cold shock protein CspC [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
 gi|256718449|gb|EEU32004.1| cold shock domain-containing protein CspD [Fusobacterium sp.
          3_1_36A2]
 gi|294487541|gb|EFG34903.1| cold shock protein [Fusobacterium sp. 3_1_27]
 gi|296153503|gb|EFG94321.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC
          23726]
          Length = 71

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ V ++  +
Sbjct: 7  KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVEFEITE 57


>gi|315126911|ref|YP_004068914.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Pseudoalteromonas sp.
          SM9913]
 gi|315015425|gb|ADT68763.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Pseudoalteromonas sp.
          SM9913]
          Length = 67

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N  KG+GFI      E+G DVF+H SA+  +G   L+EGQ VT+   Q  
Sbjct: 1  MSVTGKVKFFNEAKGFGFI----EQENGPDVFVHFSAITGSGFRTLSEGQAVTFSIKQGQ 56

Query: 61 ANGKYSAENLKL 72
             +  AEN+++
Sbjct: 57 KGPE--AENVEV 66


>gi|296129427|ref|YP_003636677.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
 gi|296021242|gb|ADG74478.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
          Length = 67

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI  +   + G DVF+H SA+ + G  +L EGQ V ++  Q
Sbjct: 3  QGAVKWFNAEKGFGFIAQD---DGGADVFVHYSAIDTQGYRSLDEGQRVEFEITQ 54


>gi|254467917|ref|ZP_05081323.1| 'Cold-shock' DNA-binding domain, putative [beta proteobacterium
          KB13]
 gi|207086727|gb|EDZ64010.1| 'Cold-shock' DNA-binding domain, putative [beta proteobacterium
          KB13]
          Length = 67

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+  +E   D+F H S++   G  +L EGQ VT++ V +  
Sbjct: 1  MAEGTVKWFNDAKGFGFITPDDGSE---DLFAHFSSITGDGYKSLKEGQRVTFE-VTDGP 56

Query: 62 NGKYSA 67
           GK ++
Sbjct: 57 KGKQAS 62


>gi|90021554|ref|YP_527381.1| cold-shock DNA-binding protein family protein [Saccharophagus
          degradans 2-40]
 gi|89951154|gb|ABD81169.1| cold-shock DNA-binding protein family [Saccharophagus degradans
          2-40]
          Length = 69

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KGYGFI+ EG    G+D+F+H S +  +G   L EGQ V++
Sbjct: 7  GTVKWFNESKGYGFISREG----GNDLFVHFSNITGSGFKTLKEGQSVSF 52


>gi|262067005|ref|ZP_06026617.1| cold-shock domain protein [Fusobacterium periodonticum ATCC
          33693]
 gi|291379265|gb|EFE86783.1| cold-shock domain protein [Fusobacterium periodonticum ATCC
          33693]
          Length = 65

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ V ++
Sbjct: 2  KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVEFE 49


>gi|238758373|ref|ZP_04619551.1| Cold shock-like protein cspB [Yersinia aldovae ATCC 35236]
 gi|238703496|gb|EEP96035.1| Cold shock-like protein cspB [Yersinia aldovae ATCC 35236]
          Length = 66

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFITP    +   DVF+H SA+ S     L EGQ V +  +++ A G 
Sbjct: 3  GLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IESGAKGP 58

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 59 AAANVVVL 66


>gi|152969470|ref|YP_001334579.1| DNA replication inhibitor [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
 gi|206580364|ref|YP_002239468.1| cold shock domain protein CspD [Klebsiella pneumoniae 342]
 gi|238893942|ref|YP_002918676.1| cold shock-like protein [Klebsiella pneumoniae NTUH-K2044]
 gi|262041018|ref|ZP_06014238.1| cold-shock protein CspD [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288936316|ref|YP_003440375.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|290510628|ref|ZP_06549998.1| cold shock domain-containing protein CspD [Klebsiella sp. 1_1_55]
 gi|329998509|ref|ZP_08303131.1| cold shock domain protein CspD [Klebsiella sp. MS 92-3]
 gi|150954319|gb|ABR76349.1| DNA replication inhibitor, nucleic acid-binding domain
          [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206569422|gb|ACI11198.1| cold shock domain protein CspD [Klebsiella pneumoniae 342]
 gi|238546258|dbj|BAH62609.1| cold shock-like protein [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
 gi|259041634|gb|EEW42685.1| cold-shock protein CspD [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288891025|gb|ADC59343.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|289777344|gb|EFD85342.1| cold shock domain-containing protein CspD [Klebsiella sp. 1_1_55]
 gi|328538654|gb|EGF64751.1| cold shock domain protein CspD [Klebsiella sp. MS 92-3]
          Length = 73

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQAVRFDVHQ 54


>gi|149374597|ref|ZP_01892371.1| cold-shock DNA-binding domain family protein [Marinobacter
          algicola DG893]
 gi|149361300|gb|EDM49750.1| cold-shock DNA-binding domain family protein [Marinobacter
          algicola DG893]
          Length = 68

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFIT     ESG DVF+H SA+   G   L EGQ V  ++   D    
Sbjct: 6  GTVKFFNEAKGFGFIT----RESGPDVFVHYSAIQGGGFKTLAEGQQV--EFTVTDGQKG 59

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 60 PQAENVVAV 68


>gi|26249026|ref|NP_755066.1| cold shock-like protein cspB [Escherichia coli CFT073]
 gi|218551643|ref|YP_002385435.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
          35469]
 gi|218561570|ref|YP_002394483.1| cold shock protein; Qin prophage [Escherichia coli S88]
 gi|300925265|ref|ZP_07141160.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|331680503|ref|ZP_08381162.1| conserved domain protein [Escherichia coli H591]
 gi|26109433|gb|AAN81636.1|AE016765_38 Cold shock-like protein cspB [Escherichia coli CFT073]
 gi|218359185|emb|CAQ91849.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
          35469]
 gi|218368339|emb|CAR06158.1| cold shock protein; Qin prophage [Escherichia coli S88]
 gi|300418598|gb|EFK01909.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|323190390|gb|EFZ75666.1| cold shock-like protein cspG [Escherichia coli RN587/1]
 gi|324112033|gb|EGC06011.1| cold-shock DNA-binding domain-containing protein [Escherichia
          fergusonii B253]
 gi|331071966|gb|EGI43302.1| conserved domain protein [Escherichia coli H591]
          Length = 71

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI+P    +   DVF+H SA+ +     L EGQ VT+  V++ A G 
Sbjct: 7  GLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNFRTLFEGQKVTFS-VESGAKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|303285238|ref|XP_003061909.1| cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
 gi|226456320|gb|EEH53621.1| cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
          Length = 121

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KG+GFITP+  +E   ++F+H+SA+ + G  +L E + V Y   ++D
Sbjct: 6  GKVKWFNTQKGFGFITPDDGSE---EIFVHQSAIHAEGFRSLREEEPVEYTVEKSD 58


>gi|117618294|ref|YP_856386.1| cold shock domain-containing protein CspD [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
 gi|117559701|gb|ABK36649.1| cold shock domain protein CspD [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
          Length = 72

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V ++  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHDSTIQMEGYKTLKAGQAVNFELQQ 54


>gi|315282229|ref|ZP_07870683.1| conserved domain protein [Listeria marthii FSL S4-120]
 gi|313614131|gb|EFR87821.1| conserved domain protein [Listeria marthii FSL S4-120]
          Length = 66

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++K  N +KG+GFI      E+GDDVF+H SA+   G  +L EGQ VT+D
Sbjct: 1  MEQGTVKNPNAEKGFGFI----ERENGDDVFVHFSAIQGDGFKSLDEGQAVTFD 50


>gi|303242124|ref|ZP_07328614.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
          CD2]
 gi|302590311|gb|EFL60069.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
          CD2]
          Length = 66

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + RG +KW+N +KG+GFI  +G    G+DVF+H SA+   G   L EG  V ++ V+
Sbjct: 1  MERGRVKWFNAEKGFGFIERDG----GNDVFVHFSAINMDGYKTLEEGTEVQFEVVE 53


>gi|289643269|ref|ZP_06475394.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
 gi|289506909|gb|EFD27883.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
          Length = 67

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI+ +G    G DVF+H SA+   G  +L EGQ V +   Q
Sbjct: 3  QGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIDMDGYKSLEEGQRVEFQVTQ 54


>gi|254492585|ref|ZP_05105756.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
          thiooxidans DMS010]
 gi|224462106|gb|EEF78384.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
          thiooxydans DMS010]
          Length = 69

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI        G DVF+H +A+ S G   L EGQ VT +  Q     +
Sbjct: 7  GTVKWFNDAKGFGFI----EQVDGPDVFVHHTAIKSEGFRTLKEGQAVTMEVTQGQKGPQ 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 --AENV 66


>gi|218297043|ref|ZP_03497720.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23]
 gi|218242598|gb|EED09135.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23]
          Length = 68

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N +KGYGFI      E G DVF+H +A+ + G   L EG+ V ++
Sbjct: 1  MKKGTVKWFNAEKGYGFI----QQEEGPDVFVHFTAIEADGFRTLNEGEHVEFE 50


>gi|221504402|gb|EEE30077.1| glycine-rich protein, putative [Toxoplasma gondii VEG]
          Length = 209

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
            + RG  KW++  KG+GFIT     E G D+F+H++ + + G  NL EG+ V +  VQ  
Sbjct: 86  QIQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVG 140

Query: 61  ANGKYSA 67
            +GK  A
Sbjct: 141 HDGKRKA 147


>gi|237841239|ref|XP_002369917.1| glycine-rich protein 2, putative [Toxoplasma gondii ME49]
 gi|211967581|gb|EEB02777.1| glycine-rich protein 2, putative [Toxoplasma gondii ME49]
          Length = 209

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
            + RG  KW++  KG+GFIT     E G D+F+H++ + + G  NL EG+ V +  VQ  
Sbjct: 86  QIQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVG 140

Query: 61  ANGKYSA 67
            +GK  A
Sbjct: 141 HDGKRKA 147


>gi|254363164|ref|ZP_04979213.1| cold shock protein [Mannheimia haemolytica PHL213]
 gi|261493957|ref|ZP_05990465.1| cold shock protein [Mannheimia haemolytica serotype A2 str.
          BOVINE]
 gi|261494758|ref|ZP_05991237.1| cold shock protein [Mannheimia haemolytica serotype A2 str.
          OVINE]
 gi|153095058|gb|EDN75609.1| cold shock protein [Mannheimia haemolytica PHL213]
 gi|261309575|gb|EEY10799.1| cold shock protein [Mannheimia haemolytica serotype A2 str.
          OVINE]
 gi|261310389|gb|EEY11584.1| cold shock protein [Mannheimia haemolytica serotype A2 str.
          BOVINE]
          Length = 70

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 6/70 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N  KG+GFITP+   + G DVF+H SA+ A+ G   L +G  V ++ +Q+   G
Sbjct: 6  GTVKWFNATKGFGFITPD---QGGKDVFVHFSAIEANGGYRTLEDGAKVQFE-IQDSERG 61

Query: 64 KYSAENLKLV 73
            SA N+K +
Sbjct: 62 A-SAVNVKTI 70


>gi|78186132|ref|YP_374175.1| cold-shock DNA-binding domain-containing protein [Chlorobium
          luteolum DSM 273]
 gi|78166034|gb|ABB23132.1| cold-shock DNA-binding protein family [Chlorobium luteolum DSM
          273]
          Length = 69

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N +KGYGFI        G DVF+H SA+  +G   L EGQ V+ +  Q +
Sbjct: 6  EGTVKWFNEEKGYGFI----QQGEGKDVFVHYSAINGSGRKTLVEGQKVSMEVTQGE 58


>gi|87118640|ref|ZP_01074539.1| probable cold-shock protein [Marinomonas sp. MED121]
 gi|86166274|gb|EAQ67540.1| probable cold-shock protein [Marinomonas sp. MED121]
          Length = 158

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GF+T     ++G+DVF+H  A+   G   L EGQ V + YV     GK
Sbjct: 93  GTVKWFNSSKGFGFLTR----DNGEDVFVHYRAIRGRGRRFLIEGQQVRF-YVTEGEKGK 147

Query: 65  YSAENLKLV 73
             AEN+ ++
Sbjct: 148 -QAENVSIL 155


>gi|256374377|ref|YP_003098037.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
 gi|255918680|gb|ACU34191.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
          Length = 67

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  +G    G DVF+H +A+ ++G  +L E Q VT++  Q     +
Sbjct: 4  GKVKWFNAEKGFGFIEQDG---GGPDVFVHFTAINASGYRSLEENQAVTFEVTQGPKGPQ 60

Query: 65 YSAENLK 71
            AEN++
Sbjct: 61 --AENVQ 65


>gi|254429153|ref|ZP_05042860.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
 gi|196195322|gb|EDX90281.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
          Length = 84

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 5/74 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KGYGF+ P+   E G+D+F+H S +   G  +L  GQ V Y+ VQ  AN  
Sbjct: 4  GRVKWFNNAKGYGFVRPD---EGGEDLFVHYSYIQMDGYKSLKAGQPVEYE-VQ-PANKG 58

Query: 65 YSAENLKLVPKSSN 78
          + A NL+   ++SN
Sbjct: 59 FHAINLRANEEASN 72


>gi|116748014|ref|YP_844701.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116697078|gb|ABK16266.1| cold-shock DNA-binding protein family [Syntrophobacter
          fumaroxidans MPOB]
          Length = 67

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G      DVF+H SA+  AG  +L EG+ V ++  Q
Sbjct: 4  GRVKWFNEKKGYGFIETDGQ----GDVFVHYSAIEGAGFRSLNEGEQVRFEVEQ 53


>gi|77460636|ref|YP_350143.1| cold-shock DNA-binding protein [Pseudomonas fluorescens Pf0-1]
 gi|77384639|gb|ABA76152.1| putative cold shock protein [Pseudomonas fluorescens Pf0-1]
          Length = 200

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI    S +SGDD+F+H  A+   G   L EGQ V +  V N   G 
Sbjct: 134 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 188

Query: 65  YSAENLKLVPK 75
            + + +  +P+
Sbjct: 189 QAEDVIAALPR 199


>gi|325660793|ref|ZP_08149421.1| cold shock protein cspA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331085477|ref|ZP_08334562.1| cold shock protein cspA [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325472867|gb|EGC76077.1| cold shock protein cspA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330407715|gb|EGG87213.1| cold shock protein cspA [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 66

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW++  KGYGFI    S E+G+DVF+H S +   G   L EGQ V ++ V   A
Sbjct: 1  MNKGTVKWFSNQKGYGFI----SDEAGNDVFVHYSGLNMEGFKTLEEGQAVEFE-VTEGA 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 KGPQAINVVKL 66


>gi|320355243|ref|YP_004196582.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
          DSM 2032]
 gi|320123745|gb|ADW19291.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
          DSM 2032]
          Length = 66

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  +G    G DVF+H SA+   G  +L EG+ V ++ V + A G
Sbjct: 3  EGTVKWFNDSKGFGFIQQDG----GKDVFVHYSAIQGQGFKSLKEGERVKFEVV-SGAKG 57

Query: 64 KYSAENL 70
            +AEN+
Sbjct: 58 P-AAENV 63


>gi|311694973|gb|ADP97846.1| cold-shock DNA-binding domain protein [marine bacterium HP15]
          Length = 103

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +KW+N  KGYGFI  +G +   DD+F H S+V   G   L  GQ VT+D   +D
Sbjct: 3  RGKVKWFNNAKGYGFIIEDGCS---DDLFAHFSSVQMDGYKTLKAGQAVTFDKKPSD 56


>gi|238916449|ref|YP_002929966.1| cold shock protein (beta-ribbon, CspA family) [Eubacterium
          eligens ATCC 27750]
 gi|238871809|gb|ACR71519.1| cold shock protein (beta-ribbon, CspA family) [Eubacterium
          eligens ATCC 27750]
          Length = 84

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI    S ESG DVF+H S +   G  +L EG  V +D V   A G
Sbjct: 21 KGTVKWFNNQKGYGFI----SDESGKDVFVHYSGLNMEGFKSLEEGAQVEFD-VTEGAKG 75

Query: 64 KYSAENLKL 72
            +    KL
Sbjct: 76 PQATNVTKL 84


>gi|256391097|ref|YP_003112661.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256357323|gb|ACU70820.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 67

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFI  +G    G DVF+H SA++ +G  NL E Q V ++  Q
Sbjct: 4  GKVKWFNGEKGFGFIEQDGG---GPDVFVHFSAISGSGYRNLEENQAVEFNVTQ 54


>gi|152964189|ref|YP_001359973.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
          SRS30216]
 gi|151358706|gb|ABS01709.1| putative cold-shock DNA-binding domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 67

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G  +L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGYGFIEQDG---GGPDVFVHYSAIGGNGYRSLEENQRVEFEVTQ 54


>gi|332668957|ref|YP_004451965.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332337995|gb|AEE44578.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484]
          Length = 312

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 6/57 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLH-RSAVASAGLFNLTEGQLVTYDYVQND 60
           G++ WY+PDKG+GF++P+   + G+D+F+H RS V    L  L EG  VTYD    D
Sbjct: 157 GTVTWYDPDKGFGFVSPD---DGGEDLFVHARSLVGD--LSELVEGDRVTYDVAAGD 208



 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 5/50 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G++ WY P KGYGF+ P+G    G ++F+H SA+   G+  +TEGQ V +
Sbjct: 81  GTVSWYEPTKGYGFVGPDG---GGPEIFVHSSAIVGGGV--ITEGQRVAF 125



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +  ++PD+G+GFITP+     G D+F+H S V +  +  L EG  V +   Q+D
Sbjct: 251 GVVARFDPDRGFGFITPDA---GGPDLFVHVSVVRNGEV--LEEGDRVRFKVRQSD 301



 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60
          +G+++W++ ++G+GF++     +  +D+F+H S  V   G   L EGQ V ++  + D
Sbjct: 3  QGTVRWFDAERGFGFLS---LGDEAEDLFVHASEIVGDDGPRVLREGQEVEFEVGEGD 57


>gi|325963821|ref|YP_004241727.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323469908|gb|ADX73593.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 67

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFITP+   +S  DVF+H S + + G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFITPD---DSDGDVFVHYSEIQTGGFKTLDENQRVQFEIGQ 54


>gi|290473777|ref|YP_003466651.1| Qin prophage; cold shock protein [Xenorhabdus bovienii SS-2004]
 gi|289173084|emb|CBJ79857.1| Qin prophage; cold shock protein [Xenorhabdus bovienii SS-2004]
          Length = 71

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFI+P+  ++   DVF+H SA+ S     L EGQ V++  V++ A G 
Sbjct: 7  GTVKWFNSDKGFGFISPKDGSK---DVFVHFSAIQSNDYKTLDEGQEVSFS-VESGAKGP 62

Query: 65 YSAENL 70
           SA N+
Sbjct: 63 -SATNV 67


>gi|255545420|ref|XP_002513770.1| cold shock protein, putative [Ricinus communis]
 gi|223546856|gb|EEF48353.1| cold shock protein, putative [Ricinus communis]
          Length = 184

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW++  KG+GFI P+   + G+D+F+H++++ S G   L+EGQ V +
Sbjct: 9  GTVKWFSAQKGFGFIAPD---DGGEDLFVHQTSIQSDGFRTLSEGQPVEF 55


>gi|326795949|ref|YP_004313769.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
 gi|326546713|gb|ADZ91933.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
          Length = 69

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      ESG DVF H SA+  +G   L EGQ V +   Q
Sbjct: 7  GTVKWFNESKGFGFI----EQESGPDVFAHFSAITGSGFKTLAEGQKVEFTVGQ 56


>gi|221483569|gb|EEE21881.1| glycine-rich protein, putative [Toxoplasma gondii GT1]
          Length = 209

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
            + RG  KW++  KG+GFIT     E G D+F+H++ + + G  NL EG+ V +  VQ  
Sbjct: 86  QIQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVG 140

Query: 61  ANGKYSA 67
            +GK  A
Sbjct: 141 HDGKRKA 147


>gi|39997003|ref|NP_952954.1| cold shock domain-contain protein [Geobacter sulfurreducens PCA]
 gi|39983891|gb|AAR35281.1| cold shock domain family protein [Geobacter sulfurreducens PCA]
 gi|298506020|gb|ADI84743.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
          KN400]
          Length = 66

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N  KG+GFI      ++G+DVF+H SA+   G  +L EG+ V++D V
Sbjct: 4  GRVKWFNDAKGFGFI----EQDNGEDVFVHFSAIQQDGFKSLAEGEQVSFDVV 52


>gi|68171539|ref|ZP_00544918.1| Cold-shock protein, DNA-binding [Ehrlichia chaffeensis str.
          Sapulpa]
 gi|88658217|ref|YP_507119.1| CSD family cold shock protein [Ehrlichia chaffeensis str.
          Arkansas]
 gi|67999044|gb|EAM85716.1| Cold-shock protein, DNA-binding [Ehrlichia chaffeensis str.
          Sapulpa]
 gi|88599674|gb|ABD45143.1| cold shock protein, CSD family [Ehrlichia chaffeensis str.
          Arkansas]
          Length = 88

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 9/77 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGST-------ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW++ +KGYGFI  +          +   D+F+H +A+  + +  L EGQ V Y   
Sbjct: 13 GYVKWFSSEKGYGFICKDQGNNKIRNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQLD 72

Query: 58 QNDANGKYSAENLKLVP 74
          +N  NGK+SA NL+L+ 
Sbjct: 73 KN--NGKFSAVNLELLE 87


>gi|118602909|ref|YP_904124.1| cold-shock DNA-binding protein family protein [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
 gi|118567848|gb|ABL02653.1| cold-shock DNA-binding protein family [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW++  KG+GFI      E+GDDVF+H  A+   G  +L EGQ V +D  Q +
Sbjct: 1  MSTTGKVKWFDAKKGFGFI----EQENGDDVFVHFRAIQGDGYKSLEEGQEVEFDLEQGE 56


>gi|78062299|ref|YP_372207.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
          383]
 gi|107026255|ref|YP_623766.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia AU 1054]
 gi|116692558|ref|YP_838091.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia HI2424]
 gi|170738189|ref|YP_001779449.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|206563468|ref|YP_002234231.1| putative DNA-binding cold-shock protein [Burkholderia cenocepacia
          J2315]
 gi|77970184|gb|ABB11563.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
 gi|105895629|gb|ABF78793.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          AU 1054]
 gi|116650558|gb|ABK11198.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          HI2424]
 gi|169820377|gb|ACA94959.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          MC0-3]
 gi|198039508|emb|CAR55475.1| putative DNA-binding cold-shock protein [Burkholderia cenocepacia
          J2315]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI+P+     GDD+F H S +   G   L EGQ V+++
Sbjct: 4  GTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSFE 51


>gi|294633715|ref|ZP_06712273.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292830357|gb|EFF88708.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  +G    G DVF H S ++  G   L EG+ VT+D  Q     +
Sbjct: 4  GTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNISGNGYRELVEGEPVTFDVTQGQKGPQ 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 --AENI 64


>gi|322420109|ref|YP_004199332.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
          M18]
 gi|320126496|gb|ADW14056.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI      ++G+DVF+H SA+   G  +L EG+ V++D V N   G
Sbjct: 3  QGKVKWFNDAKGFGFI----EQDNGEDVFVHFSAITGEGFKSLAEGESVSFD-VTNGPKG 57

Query: 64 KYSAENLKLV 73
             A N+K +
Sbjct: 58 -LQAANVKKI 66


>gi|237739959|ref|ZP_04570440.1| cold shock protein [Fusobacterium sp. 2_1_31]
 gi|237741555|ref|ZP_04572036.1| cold shock protein [Fusobacterium sp. 4_1_13]
 gi|294782948|ref|ZP_06748274.1| hypothetical protein HMPREF0400_00932 [Fusobacterium sp.
          1_1_41FAA]
 gi|229421976|gb|EEO37023.1| cold shock protein [Fusobacterium sp. 2_1_31]
 gi|229429203|gb|EEO39415.1| cold shock protein [Fusobacterium sp. 4_1_13]
 gi|294481589|gb|EFG29364.1| hypothetical protein HMPREF0400_00932 [Fusobacterium sp.
          1_1_41FAA]
          Length = 66

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ V ++  +
Sbjct: 2  KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVEFEITE 52


>gi|86738977|ref|YP_479377.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3]
 gi|111220090|ref|YP_710884.1| cold-shock protein [Frankia alni ACN14a]
 gi|158318310|ref|YP_001510818.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
          EAN1pec]
 gi|86565839|gb|ABD09648.1| cold-shock DNA-binding protein family [Frankia sp. CcI3]
 gi|111147622|emb|CAJ59277.1| Cold-shock protein; nucleic acid-binding domain [Frankia alni
          ACN14a]
 gi|158113715|gb|ABW15912.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI+ +G    G DVF+H SA+   G   L EGQ V +   Q
Sbjct: 3  QGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIQMDGYKALEEGQRVEFQVTQ 54


>gi|299065287|emb|CBJ36455.1| cold shock/stress protein, member of the Csp-family [Ralstonia
          solanacearum CMR15]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G++KW+N  KG+GFITP+     G+D+F H S +  +G   L EGQ V Y
Sbjct: 1  METGTVKWFNESKGFGFITPDA---GGNDLFAHFSEIQGSGFKTLQEGQKVRY 50


>gi|255525596|ref|ZP_05392530.1| cold-shock DNA-binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296185483|ref|ZP_06853893.1| cold-shock DNA-binding domain protein [Clostridium
          carboxidivorans P7]
 gi|255510686|gb|EET86992.1| cold-shock DNA-binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296050317|gb|EFG89741.1| cold-shock DNA-binding domain protein [Clostridium
          carboxidivorans P7]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 5/56 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQN 59
          G +KW+N +KG+GFI    S E G DVF+H SA+   G   +L+EGQ V YD ++ 
Sbjct: 4  GVVKWFNDEKGFGFI----SGEDGTDVFVHYSAIKEEGKRKDLSEGQQVQYDVIET 55


>gi|197119112|ref|YP_002139539.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|197088472|gb|ACH39743.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
          Length = 68

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI      ++G+DVF+H SA+   G  +L EG+ V++D V N   G
Sbjct: 3  QGKVKWFNDAKGFGFI----EQDNGEDVFVHFSAITGDGFKSLAEGESVSFD-VTNGPKG 57

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 58 LQAANVKKL 66


>gi|113869008|ref|YP_727497.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|113527784|emb|CAJ94129.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
          Length = 68

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI P+   E  +++F H SA+  +G   L EGQ V+++ VQ
Sbjct: 4  GIVKWFNDAKGFGFIKPD---EGEEELFAHFSAIQMSGFKTLKEGQRVSFEVVQ 54


>gi|110833014|ref|YP_691873.1| cold-shock protein [Alcanivorax borkumensis SK2]
 gi|254427611|ref|ZP_05041318.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
 gi|110646125|emb|CAL15601.1| cold-shock protein [Alcanivorax borkumensis SK2]
 gi|196193780|gb|EDX88739.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
          Length = 68

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KG+GF+      E+G DVF H SA+  +G   L EGQ V +   Q
Sbjct: 5  KGTVKWFNEAKGFGFL----EQENGPDVFAHFSAITGSGFKTLAEGQAVEFTVTQ 55


>gi|239994277|ref|ZP_04714801.1| stress response protein CspD [Alteromonas macleodii ATCC 27126]
          Length = 72

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI PE   + G+D+F H S +   G  +L  GQ VT++ VQ    G 
Sbjct: 4  GKVKWFNNAKGFGFIVPE---DGGEDIFAHYSTIQMEGYRSLKAGQEVTFE-VQQGPKGL 59

Query: 65 YSAENL 70
          + AEN+
Sbjct: 60 H-AENI 64


>gi|320333925|ref|YP_004170636.1| cold-shock DNA-binding domain-containing protein [Deinococcus
          maricopensis DSM 21211]
 gi|319755214|gb|ADV66971.1| cold-shock DNA-binding domain protein [Deinococcus maricopensis
          DSM 21211]
          Length = 86

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  +GS     DVF H SA+ +AG   L EG  V +D  +      
Sbjct: 4  GRVKWFNAEKGFGFIEVDGSP----DVFAHFSAIKAAGFKKLNEGDEVEFDIEEGQRGKG 59

Query: 65 YSAENL---KLVPKS 76
            A N+   K  P+S
Sbjct: 60 PQAANIVVTKAAPES 74


>gi|237745018|ref|ZP_04575499.1| cold shock protein [Fusobacterium sp. 7_1]
 gi|256028777|ref|ZP_05442611.1| cold shock protein [Fusobacterium sp. D11]
 gi|289766681|ref|ZP_06526059.1| cold shock protein [Fusobacterium sp. D11]
 gi|229432247|gb|EEO42459.1| cold shock protein [Fusobacterium sp. 7_1]
 gi|289718236|gb|EFD82248.1| cold shock protein [Fusobacterium sp. D11]
          Length = 66

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ V ++  +
Sbjct: 2  KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVEFEITE 52


>gi|4454361|emb|CAA72659.1| cold shock protein, CSPA [Vibrio cholerae]
          Length = 70

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          GS+KW+N  KG+GF+T +     G+DVF+H +++ S G   L EGQ V++
Sbjct: 7  GSVKWFNETKGFGFLTQD---NGGNDVFVHLNSIQSEGFKTLAEGQRVSF 53


>gi|116671146|ref|YP_832079.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
          FB24]
 gi|220913078|ref|YP_002488387.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|116611255|gb|ABK03979.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
 gi|219859956|gb|ACL40298.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFITP+   +S  DVF+H S + + G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFITPD---DSDGDVFVHYSEIQTGGFKTLDENQRVQFEIGQ 54


>gi|329895883|ref|ZP_08271211.1| Cold shock protein CspE [gamma proteobacterium IMCC3088]
 gi|328922101|gb|EGG29460.1| Cold shock protein CspE [gamma proteobacterium IMCC3088]
          Length = 68

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  EG    G DVF+H SA+   G   L +GQ V +D    D    
Sbjct: 6  GTVKWFNETKGFGFIEREG----GPDVFVHFSAIKGDGFKTLADGQKVEFDV--TDGQKG 59

Query: 65 YSAENL 70
            AEN+
Sbjct: 60 PQAENV 65


>gi|302824155|ref|XP_002993723.1| hypothetical protein SELMODRAFT_187582 [Selaginella
          moellendorffii]
 gi|300138447|gb|EFJ05215.1| hypothetical protein SELMODRAFT_187582 [Selaginella
          moellendorffii]
          Length = 165

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  KG+GFITP+   + G+D+F+H+S++ + G  +L +G+ V +
Sbjct: 10 GKVKWFNSAKGFGFITPD---DGGEDLFVHQSSIHADGFRSLKDGEAVEF 56


>gi|195648068|gb|ACG43502.1| glycine-rich protein 2b [Zea mays]
          Length = 208

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFITP+  +E   D+F+H+S++ S G  +L +G  V Y
Sbjct: 8  GTVKWFNGTKGFGFITPDDGSE---DLFVHQSSIKSDGYRSLNDGDAVEY 54


>gi|226531123|ref|NP_001151606.1| LOC100285240 [Zea mays]
 gi|195638850|gb|ACG38893.1| glycine-rich protein 2b [Zea mays]
          Length = 208

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFITP+  +E   D+F+H+S++ S G  +L +G  V Y
Sbjct: 8  GTVKWFNGTKGFGFITPDDGSE---DLFVHQSSIKSDGYRSLNDGDAVEY 54


>gi|195609518|gb|ACG26589.1| glycine-rich protein 2b [Zea mays]
          Length = 208

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFITP+  +E   D+F+H+S++ S G  +L +G  V Y
Sbjct: 8  GTVKWFNGTKGFGFITPDDGSE---DLFVHQSSIKSDGYRSLNDGDAVEY 54


>gi|41406767|ref|NP_959603.1| CspA_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118467308|ref|YP_880121.1| hypothetical protein MAV_0852 [Mycobacterium avium 104]
 gi|254773743|ref|ZP_05215259.1| hypothetical protein MaviaA2_03582 [Mycobacterium avium subsp.
          avium ATCC 25291]
 gi|41395117|gb|AAS02986.1| CspA_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118168595|gb|ABK69492.1| conserved domain protein [Mycobacterium avium 104]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFITP+  T+   D+F+H S +  +G  +L E Q V +D V+  A G
Sbjct: 3  QGTVKWFNGEKGFGFITPDDGTK---DLFVHYSEIQGSGYRSLDENQRVQFD-VEQGAKG 58


>gi|323356496|ref|YP_004222892.1| cold shock proteins [Microbacterium testaceum StLB037]
 gi|323272867|dbj|BAJ73012.1| cold shock proteins [Microbacterium testaceum StLB037]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KGYGFI P+   +   D+F H SA+   G   LTE Q V +D  Q
Sbjct: 4  GTVKWFNSEKGYGFIAPD---DGSADLFAHFSAIQGNGFKELTEAQKVEFDAEQ 54


>gi|194292370|ref|YP_002008277.1| cold shock protein, transcription antiterminator, affects
          expression of rpos and uspa [Cupriavidus taiwanensis
          LMG 19424]
 gi|193226274|emb|CAQ72223.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Cupriavidus taiwanensis
          LMG 19424]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G++KW+N  KG+GFITP+     G+D+F H S +  +G  +L EGQ V Y
Sbjct: 1  METGTVKWFNDSKGFGFITPD---AGGNDLFAHFSEIQGSGFKSLAEGQKVRY 50


>gi|331698444|ref|YP_004334683.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953133|gb|AEA26830.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 315

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 5/50 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G++ WY P KGYGF +P+G    G D+F+H SA+ + G+  +TEGQ V +
Sbjct: 81  GTVNWYEPGKGYGFASPDG---GGADIFVHSSAIVTGGV--VTEGQRVAF 125



 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60
          +G+++W++ D+G+GF+ PE   +   DVF+H S  V   G   L EGQ V ++  +ND
Sbjct: 3  QGTVRWFDADRGFGFLAPE---DGSPDVFVHASEIVGGGGAKALREGQAVVFEIGEND 57



 Score = 40.8 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           ++ WY+ D+G+GFI P+       DVF+H  A+A  GL  L EG  V Y+
Sbjct: 161 TVAWYDEDRGFGFIDPD---SGAGDVFVHARALAE-GLTWLAEGDRVAYE 206



 Score = 37.4 bits (85), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +  Y+ D+G+GFITP+     GDD+F H S +   G   L +G  V Y   Q+D
Sbjct: 254 GVVARYDEDRGFGFITPDA---GGDDLFAHVSVI--MGSEPLQKGDRVRYAVRQSD 304


>gi|262040627|ref|ZP_06013865.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|259041991|gb|EEW43024.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
          Length = 70

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N DKG+GFITP+  ++   D+F+H SA+ + G  +L EGQ V++
Sbjct: 7  GIVKWFNADKGFGFITPDDGSK---DLFVHFSAIQNDGYKSLDEGQKVSF 53


>gi|229076838|ref|ZP_04209743.1| Cold shock protein 2 [Bacillus cereus Rock4-18]
 gi|228706282|gb|EEL58550.1| Cold shock protein 2 [Bacillus cereus Rock4-18]
          Length = 66

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW+N DKG+GFI        G DVF+H SA+   G  +L EGQ VT++  Q
Sbjct: 1  MEQGKVKWFNADKGFGFI----ERADGADVFVHFSAIQIDGYKSLDEGQSVTFEVEQ 53


>gi|87119420|ref|ZP_01075317.1| Cold shock protein [Marinomonas sp. MED121]
 gi|86164896|gb|EAQ66164.1| Cold shock protein [Marinomonas sp. MED121]
          Length = 69

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 8/73 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++K++N  KG+GFIT     + G DVF+H SA+ S+G   L EGQ V +      A
Sbjct: 4  VVTGTVKFFNETKGFGFIT----QDKGPDVFVHFSAINSSGFKTLAEGQKVEFQV----A 55

Query: 62 NGKYSAENLKLVP 74
          +GK   E   + P
Sbjct: 56 DGKKGPEAQNVTP 68


>gi|54309149|ref|YP_130169.1| putative cold shock-like protein [Photobacterium profundum SS9]
 gi|90410345|ref|ZP_01218361.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|46913581|emb|CAG20367.1| putative Cold shock-like protein [Photobacterium profundum SS9]
 gi|90328586|gb|EAS44870.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
          Length = 69

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  A+   G  +L EGQ V++D  Q
Sbjct: 6  GIVKWFNDEKGFGFITQD---NGGADVFVHFRAITGDGFKSLAEGQKVSFDVEQ 56


>gi|238026086|ref|YP_002910317.1| Cold shock-like protein CspD [Burkholderia glumae BGR1]
 gi|330815379|ref|YP_004359084.1| Cold shock-like protein CspD [Burkholderia gladioli BSR3]
 gi|237875280|gb|ACR27613.1| Cold shock-like protein CspD [Burkholderia glumae BGR1]
 gi|327367772|gb|AEA59128.1| Cold shock-like protein CspD [Burkholderia gladioli BSR3]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITPEG    GDD+F H S +   G   L E Q V ++
Sbjct: 4  GTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVDGFKTLQENQKVEFE 51


>gi|254503760|ref|ZP_05115911.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
 gi|222439831|gb|EEE46510.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
          Length = 66

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 7/73 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+H G++KW++  +G G I PE     GDD+ +  +A+  +G+ +L EGQLV +D     
Sbjct: 1  MLH-GNVKWFDKGRGVGTIEPE----DGDDILVDITALRRSGIDSLKEGQLVAFDLEWR- 54

Query: 61 ANGKYSAENLKLV 73
            G+  AE+LK++
Sbjct: 55 -RGQMVAEDLKVL 66


>gi|15596158|ref|NP_249652.1| cold-shock protein [Pseudomonas aeruginosa PAO1]
 gi|218893068|ref|YP_002441937.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58]
 gi|254239310|ref|ZP_04932633.1| hypothetical protein PACG_05506 [Pseudomonas aeruginosa C3719]
 gi|9946868|gb|AAG04350.1|AE004530_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1]
 gi|126171241|gb|EAZ56752.1| hypothetical protein PACG_05506 [Pseudomonas aeruginosa C3719]
 gi|218773296|emb|CAW29108.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58]
          Length = 63

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +KW+N  KG+GFI    S +SG+D+F+H  A+   G   L EGQ V +  VQ D
Sbjct: 1  MKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 50


>gi|325499887|gb|EGC97746.1| cold shock-like protein cspB [Escherichia fergusonii ECD227]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI+P    +   DVF+H SA+ +     L EGQ VT+  V++ A G 
Sbjct: 3  GLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNFRTLFEGQKVTFS-VESGAKGP 58

Query: 65 YSA 67
           +A
Sbjct: 59 AAA 61


>gi|312200656|ref|YP_004020717.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
 gi|311231992|gb|ADP84847.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
          Length = 67

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KG+GFI+ +G    G DVF+H SA+   G  +L EGQ V +   Q 
Sbjct: 3  QGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIDMDGYKSLEEGQRVEFQVTQG 55


>gi|91226269|ref|ZP_01261109.1| cold shock protein [Vibrio alginolyticus 12G01]
 gi|91189280|gb|EAS75559.1| cold shock protein [Vibrio alginolyticus 12G01]
          Length = 70

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N +KG+GFIT +     G D+F+H  +++S G   L EGQ V+++ V+    G 
Sbjct: 7  GSVKWFNENKGFGFITKD---SDGKDIFVHFRSISSDGFKTLLEGQKVSFE-VEPGEKGP 62

Query: 65 YSAENLKLV 73
          + A N+ L+
Sbjct: 63 H-ATNVALI 70


>gi|73663810|ref|YP_302589.1| cold shock protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72496387|dbj|BAE19644.1| cold shock protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
          Length = 66

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ G++KW+N +KG+GFI      E+G D+F+H S + + G  +L EGQ V +D  +
Sbjct: 1  MNNGTVKWFNAEKGFGFI----ERENGSDLFVHFSGIVAEGYKSLEEGQKVEFDITE 53


>gi|225431120|ref|XP_002266115.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 241

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 3/53 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G ++W++  KG+GFITP    E G+D+F+H+S++ S G  +L EG+ V +  V
Sbjct: 8  GVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIV 57


>gi|218778357|ref|YP_002429675.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218759741|gb|ACL02207.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 66

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI      E G DVF+H +A+   G   L EG  V++D  Q
Sbjct: 4  GTVKWFNDAKGYGFI----EQEEGGDVFVHYTAITGKGFRTLAEGDRVSFDVEQ 53


>gi|145299398|ref|YP_001142239.1| cold shock domain-containing protein CspD [Aeromonas salmonicida
          subsp. salmonicida A449]
 gi|330829988|ref|YP_004392940.1| Cold shock-like protein cspD [Aeromonas veronii B565]
 gi|142852170|gb|ABO90491.1| cold shock domain protein CspD [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|328805124|gb|AEB50323.1| Cold shock-like protein cspD [Aeromonas veronii B565]
          Length = 72

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V ++  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMEGYKTLKAGQAVNFELQQ 54


>gi|49082320|gb|AAT50560.1| PA0961 [synthetic construct]
          Length = 64

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +KW+N  KG+GFI    S +SG+D+F+H  A+   G   L EGQ V +  VQ D
Sbjct: 1  MKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 50


>gi|15644617|ref|NP_229670.1| cold shock protein [Thermotoga maritima MSB8]
 gi|148270057|ref|YP_001244517.1| cold-shock DNA-binding domain-containing protein [Thermotoga
          petrophila RKU-1]
 gi|170288741|ref|YP_001738979.1| cold-shock DNA-binding domain-containing protein [Thermotoga sp.
          RQ2]
 gi|281412062|ref|YP_003346141.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
          RKU-10]
 gi|4982460|gb|AAD36936.1|AE001824_5 cold shock protein [Thermotoga maritima MSB8]
 gi|147735601|gb|ABQ46941.1| cold-shock DNA-binding protein family [Thermotoga petrophila
          RKU-1]
 gi|170176244|gb|ACB09296.1| cold-shock DNA-binding domain protein [Thermotoga sp. RQ2]
 gi|281373165|gb|ADA66727.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
          RKU-10]
          Length = 66

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW++  KGYGFIT     E+G+D+F+H SA+   G   L E + V ++ VQ    G
Sbjct: 2  RGTVKWFDSKKGYGFIT----MENGEDIFVHWSAIQMDGFKTLRENETVEFE-VQKGTKG 56


>gi|330445023|ref|ZP_08308677.1| transcription antiterminator and regulator of RNA stability
          [Photobacterium leiognathi subsp. mandapamensis
          svers.1.1.]
 gi|328493141|dbj|GAA03174.1| transcription antiterminator and regulator of RNA stability
          [Photobacterium leiognathi subsp. mandapamensis
          svers.1.1.]
          Length = 68

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFI    S   G DVF+H SA+ + G   L EGQ V +  V +   G 
Sbjct: 6  GTVKWFNDDKGFGFI----SGADGKDVFVHFSAIQAQGRRTLREGQSVEF-IVTDGQKGP 60

Query: 65 YSAENLKL 72
           ++E + L
Sbjct: 61 QASEVVAL 68


>gi|307726451|ref|YP_003909664.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1003]
 gi|307586976|gb|ADN60373.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + GDD+F H S +   G   L E Q V+++  Q
Sbjct: 4  GTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIKGNGFKTLAENQKVSFETKQ 54


>gi|240146141|ref|ZP_04744742.1| putative cold shock protein [Roseburia intestinalis L1-82]
 gi|257201740|gb|EEV00025.1| putative cold shock protein [Roseburia intestinalis L1-82]
 gi|291537505|emb|CBL10617.1| cold-shock DNA-binding protein family [Roseburia intestinalis
          M50/1]
 gi|291540033|emb|CBL13144.1| cold-shock DNA-binding protein family [Roseburia intestinalis
          XB6B4]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +++G++KW+N  KGYGFI    S E G+DVF+H S +   G  +L EG  V ++ V+
Sbjct: 1  MNKGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLEEGATVEFEVVE 53


>gi|224012555|ref|XP_002294930.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
          pseudonana CCMP1335]
 gi|220969369|gb|EED87710.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
          pseudonana CCMP1335]
          Length = 102

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KGYGFITP       +D+F+H+S++   G   L EG  V ++ + +D +GK
Sbjct: 7  GNVKWFSNKKGYGFITPAEGATVAEDIFVHQSSIHCDGYRTLDEGWEVEFE-IGHDDDGK 65

Query: 65 YSA 67
            A
Sbjct: 66 VKA 68


>gi|62180569|ref|YP_216986.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|62128202|gb|AAX65905.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|322715045|gb|EFZ06616.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
          Length = 136

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+NP+KG+GFITP+   +   DVF+H SA+ S     L E Q V +   Q
Sbjct: 7  GLVKWFNPEKGFGFITPK---DGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQ 57


>gi|26990715|ref|NP_746140.1| cold-shock protein CspD [Pseudomonas putida KT2440]
 gi|24985709|gb|AAN69604.1|AE016594_1 cold-shock protein CspD [Pseudomonas putida KT2440]
          Length = 88

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  EG +   DD+F H SA+   G   L  GQ V ++ VQ
Sbjct: 4  GKVKWFNNAKGYGFINEEGKS---DDLFAHYSAIQMDGYKTLKAGQAVVFNIVQ 54


>gi|317506528|ref|ZP_07964325.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
 gi|316255167|gb|EFV14440.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
          Length = 68

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 5/65 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDAN 62
          +G++KW+N +KG+GFITP+   + G D+F+H SA+  S G   L E Q V ++ VQ    
Sbjct: 3  QGTVKWFNEEKGFGFITPD---DGGKDLFVHFSAITGSTGFRTLQENQRVQFE-VQASDR 58

Query: 63 GKYSA 67
          G  +A
Sbjct: 59 GPQAA 63


>gi|209520217|ref|ZP_03268987.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|209499333|gb|EDZ99418.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+     GDD+F H S ++  G   L E Q V+Y+
Sbjct: 4  GTVKWFNDSKGFGFITPD---NGGDDLFAHFSEISGDGFKTLAENQKVSYE 51


>gi|152997268|ref|YP_001342103.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
          MWYL1]
 gi|150838192|gb|ABR72168.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
          MWYL1]
          Length = 87

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H GS+KW+N  KGYGFI  E   E   D+F+H SA+   G   L  GQ VT++ V+   
Sbjct: 1  MHHGSVKWFNNAKGYGFIVSEDFNE---DLFIHYSAINIEGYKTLKAGQAVTFN-VEPGE 56

Query: 62 NGKYSAENLKLVPKSS 77
           G ++ E     PK +
Sbjct: 57 RGLHAIEINPTSPKET 72


>gi|52842335|ref|YP_096134.1| cold shock DNA binding domain-containing protein [Legionella
          pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54297985|ref|YP_124354.1| hypothetical protein lpp2041 [Legionella pneumophila str. Paris]
 gi|148359631|ref|YP_001250838.1| cold shock DNA binding domain-containing protein [Legionella
          pneumophila str. Corby]
 gi|296107674|ref|YP_003619375.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy]
 gi|52629446|gb|AAU28187.1| cold shock DNA binding domain protein [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
 gi|53751770|emb|CAH13193.1| hypothetical protein lpp2041 [Legionella pneumophila str. Paris]
 gi|148281404|gb|ABQ55492.1| cold shock DNA binding domain protein [Legionella pneumophila
          str. Corby]
 gi|295649576|gb|ADG25423.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 69

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI  EG    G DVF H   ++S+G   LTEGQ V +   Q
Sbjct: 7  GVVKWFNEIKGFGFIEQEG----GPDVFAHFKEISSSGFKTLTEGQRVQFIVTQ 56


>gi|284046448|ref|YP_003396788.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
 gi|283950669|gb|ADB53413.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW++ DKG+GFITP+  ++   D+F+H + + S G  +L EG  V+YD
Sbjct: 4  GTVKWFSDDKGFGFITPDDQSK---DLFVHHTGIISDGYRSLPEGAKVSYD 51


>gi|269961818|ref|ZP_06176175.1| cold shock domain family protein [Vibrio harveyi 1DA3]
 gi|269833396|gb|EEZ87498.1| cold shock domain family protein [Vibrio harveyi 1DA3]
          Length = 70

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GF+T +     G DVF+H +A+ + G   L EGQ V++    N  +GK
Sbjct: 7  GSVKWFNETKGFGFLTQD---NGGQDVFVHFNAIVADGFKTLAEGQKVSF----NVEDGK 59

Query: 65 YSAENLKLVP 74
             +  ++ P
Sbjct: 60 KGPQATEVTP 69


>gi|188591773|ref|YP_001796372.1| major cold shock protein [Cupriavidus taiwanensis]
 gi|170939168|emb|CAP64206.1| major cold shock protein [Cupriavidus taiwanensis LMG 19424]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KGYGFITP+   + G D+F H   +  AG  +L EG  V ++  Q
Sbjct: 4  GIVKWFNSEKGYGFITPD---DGGKDLFAHYKEIQGAGFKSLEEGAKVEFEITQ 54


>gi|330446013|ref|ZP_08309665.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490204|dbj|GAA04162.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
          Length = 69

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ V+++  Q
Sbjct: 6  GTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLAEGQKVSFETEQ 56


>gi|262198097|ref|YP_003269306.1| cold-shock DNA-binding domain protein [Haliangium ochraceum DSM
          14365]
 gi|262081444|gb|ACY17413.1| cold-shock DNA-binding domain protein [Haliangium ochraceum DSM
          14365]
          Length = 94

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI      E G DVF+H S + + G   LTEG++V Y+ +Q    G 
Sbjct: 4  GAVKWFNNVKGYGFIL----REDGQDVFVHWSNILADGYRLLTEGEIVEYE-LQEGPKGL 58

Query: 65 YSAENLKLVPKS 76
          ++A+     P S
Sbjct: 59 FAAQVKSRDPSS 70


>gi|257067904|ref|YP_003154159.1| cold-shock DNA-binding protein family [Brachybacterium faecium
          DSM 4810]
 gi|256558722|gb|ACU84569.1| cold-shock DNA-binding protein family [Brachybacterium faecium
          DSM 4810]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G + W+N DKGYGFI PE  +    DVF H SA+  +G  +L E Q V +D  Q
Sbjct: 4  GIVTWFNSDKGYGFIAPEDGSA---DVFAHFSAIVGSGRRDLEENQRVEFDVEQ 54


>gi|315221882|ref|ZP_07863794.1| cold-shock DNA-binding domain protein [Streptococcus anginosus
          F0211]
 gi|315189115|gb|EFU22818.1| cold-shock DNA-binding domain protein [Streptococcus anginosus
          F0211]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI    S E+G DVF H SA+ S G  +L EG  V ++
Sbjct: 3  QGTVKWFNAEKGFGFI----SQENGPDVFAHFSAIQSDGFKSLNEGDKVMFN 50


>gi|302822137|ref|XP_002992728.1| hypothetical protein SELMODRAFT_186937 [Selaginella
          moellendorffii]
 gi|300139469|gb|EFJ06209.1| hypothetical protein SELMODRAFT_186937 [Selaginella
          moellendorffii]
          Length = 159

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  KG+GFITP+   + G+D+F+H+S++ + G  +L +G+ V +
Sbjct: 10 GKVKWFNSAKGFGFITPD---DGGEDLFVHQSSIHADGFRSLKDGEAVEF 56


>gi|293396849|ref|ZP_06641123.1| cold shock domain protein CspD [Serratia odorifera DSM 4582]
 gi|291420320|gb|EFE93575.1| cold shock domain protein CspD [Serratia odorifera DSM 4582]
          Length = 73

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVRFDVHQ 54


>gi|126740669|ref|ZP_01756355.1| cold shock family protein [Roseobacter sp. SK209-2-6]
 gi|126718184|gb|EBA14900.1| cold shock family protein [Roseobacter sp. SK209-2-6]
          Length = 68

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   E G DVF+H S V  +GL  L +   V Y+  +   +G+
Sbjct: 4  GTVKWFNTTKGFGFIEPD---EGGKDVFVHISQVERSGLSGLADNMKVDYELTEG-RDGR 59

Query: 65 YSAENLK 71
            A  LK
Sbjct: 60 KMAGELK 66


>gi|108758693|ref|YP_628940.1| cold-shock protein CspC [Myxococcus xanthus DK 1622]
 gi|4193394|gb|AAD10035.1| CspC [Myxococcus xanthus]
 gi|108462573|gb|ABF87758.1| cold-shock protein CspC [Myxococcus xanthus DK 1622]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI  +G    G+DVF+H SA+   G   L EGQ V ++
Sbjct: 4  GTVKWFNDAKGFGFIVQDG---GGEDVFVHHSAINMDGFRTLQEGQKVEFE 51


>gi|294101499|ref|YP_003553357.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
 gi|293616479|gb|ADE56633.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
          Length = 66

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N  KGYGFIT     E G D F+H SA+   G   L EGQ V++D
Sbjct: 3  QGTVKWFNGTKGYGFIT----GEDGKDYFVHFSAIQVDGFKTLDEGQKVSFD 50


>gi|297836502|ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297331973|gb|EFH62392.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 299

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G + W+   KGYGFITP+   + G+++F+H+S++ S G  +LT G+ V Y  +   ++GK
Sbjct: 11 GKVNWFGDGKGYGFITPD---DGGEELFVHQSSIVSDGYRSLTVGESVEYS-ITLGSDGK 66

Query: 65 YSAENL 70
            A N+
Sbjct: 67 TKAVNV 72


>gi|223935943|ref|ZP_03627858.1| cold-shock DNA-binding domain protein [bacterium Ellin514]
 gi|223895544|gb|EEF61990.1| cold-shock DNA-binding domain protein [bacterium Ellin514]
          Length = 68

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFI    + +SG DVF+H +++  +G   L EG+ V ++ V +D   K
Sbjct: 4  GKVKWFDNKKGFGFI----AQDSGQDVFVHHTSILGSGFKTLNEGEEVNFEVVSSDKGPK 59

Query: 65 YSAENLKLV 73
            A+N++ V
Sbjct: 60 --AQNVQRV 66


>gi|300113220|ref|YP_003759795.1| cold-shock DNA-binding domain-containing protein [Nitrosococcus
          watsonii C-113]
 gi|299539157|gb|ADJ27474.1| cold-shock DNA-binding domain protein [Nitrosococcus watsonii
          C-113]
          Length = 69

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI  EG    G D+F+H  ++  +G   L EGQ V++  VQ
Sbjct: 7  GTVKWFNDSKGYGFIQREG----GSDLFVHYRSITGSGHRTLKEGQQVSFIEVQ 56


>gi|258620199|ref|ZP_05715238.1| cold shock transcriptional regulator [Vibrio mimicus VM573]
 gi|258624440|ref|ZP_05719387.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603]
 gi|262171708|ref|ZP_06039386.1| cold shock protein CspA [Vibrio mimicus MB-451]
 gi|258583287|gb|EEW08089.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603]
 gi|258587557|gb|EEW12267.1| cold shock transcriptional regulator [Vibrio mimicus VM573]
 gi|261892784|gb|EEY38770.1| cold shock protein CspA [Vibrio mimicus MB-451]
          Length = 70

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KG+GFITP+     G D+F+H  ++ S G   L+EGQ V ++  Q +
Sbjct: 7  GLVKWFNETKGFGFITPD---NGGADLFVHFKSIVSDGFKTLSEGQKVAFNVEQGN 59


>gi|186473959|ref|YP_001861301.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184196291|gb|ACC74255.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   + G+D+F H S + + G  +L E Q V+++ V+    GK
Sbjct: 4  GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRTEGFKSLQENQKVSFE-VKMGPKGK 59

Query: 65 YSAENLK 71
           +A N+K
Sbjct: 60 QAA-NIK 65


>gi|288575007|ref|ZP_06393364.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288570748|gb|EFC92305.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 65

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N  KGYGFIT    TE G+DVF+H SA+   G   L E  +V ++
Sbjct: 2  KGTVKWFNGTKGYGFIT----TEEGNDVFVHFSAIQMDGYKTLEENDVVEFE 49


>gi|209972088|gb|ACJ03555.1| cold shock protein [Bacillus thuringiensis serovar finitimus]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++
Sbjct: 1  MAVTGQVKWFNSEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFE 51


>gi|94984745|ref|YP_604109.1| cold-shock DNA-binding domain-containing protein [Deinococcus
          geothermalis DSM 11300]
 gi|94555026|gb|ABF44940.1| cold-shock DNA-binding domain protein [Deinococcus geothermalis
          DSM 11300]
          Length = 87

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N +KGYGFI  EGS    +DVF H SA+ + G   L EG  V ++
Sbjct: 4  GKVKWFNAEKGYGFIETEGS----EDVFAHFSAIQAQGFKKLNEGDEVEFE 50


>gi|323140506|ref|ZP_08075434.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT
          12067]
 gi|322415074|gb|EFY05865.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT
          12067]
          Length = 68

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 8/74 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G++KW+N  KGYGFI       +G +VF+H SA+ S G   L EGQ V+Y      
Sbjct: 1  MLSIGTVKWFNNTKGYGFI----EARNGQEVFVHFSAIRSDGYRCLQEGQRVSYHL---- 52

Query: 61 ANGKYSAENLKLVP 74
          + GK+    L + P
Sbjct: 53 SRGKHGPMALNVSP 66


>gi|163857153|ref|YP_001631451.1| cold shock-like protein [Bordetella petrii DSM 12804]
 gi|163260881|emb|CAP43183.1| cold shock-like protein [Bordetella petrii]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G +KW+N DKG+GFI PE     G D+F H S + S G  +L E Q V+Y   Q
Sbjct: 1  METGIVKWFNADKGFGFIMPE---NGGKDLFAHFSGIESEGYKSLEENQRVSYVQTQ 54


>gi|288918768|ref|ZP_06413114.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
 gi|288349853|gb|EFC84084.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
          Length = 68

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFIT +G    G DVF H S++   G  +L EGQ V++  ++   
Sbjct: 1  MSEGTVKWFNAEKGFGFITVDG---GGPDVFAHFSSIVGDGYKSLEEGQRVSFT-IEQGQ 56

Query: 62 NGKYSAENLKLV 73
           G  +A+   L+
Sbjct: 57 KGPQAAQVQPLI 68


>gi|189485194|ref|YP_001956135.1| cold shock RNA chaperon protein [uncultured Termite group 1
          bacterium phylotype Rs-D17]
 gi|170287153|dbj|BAG13674.1| cold shock RNA chaperon protein [uncultured Termite group 1
          bacterium phylotype Rs-D17]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KGYGFI+ +   +   DVF H SA+ S G  +L EG  V ++ V +D   
Sbjct: 3  QGKVKWFNDQKGYGFISND---DGSGDVFAHYSAIQSDGFKSLAEGDSVEFEIVNSDKGP 59

Query: 64 KYSAENLKLV 73
          K  A N+K +
Sbjct: 60 K--AANIKKI 67


>gi|16765332|ref|NP_460947.1| cold-shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|56413093|ref|YP_150168.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|161613431|ref|YP_001587396.1| hypothetical protein SPAB_01147 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|197362019|ref|YP_002141656.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|205352312|ref|YP_002226113.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|207856492|ref|YP_002243143.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|224583507|ref|YP_002637305.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|238912431|ref|ZP_04656268.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Tennessee str. CDC07-0191]
 gi|325530013|sp|E1WGN1|CSPJ_SALTS RecName: Full=Cold shock-like protein CspJ
 gi|325530014|sp|P0CL01|CSPJ_SALTY RecName: Full=Cold shock-like protein CspJ
 gi|2961317|emb|CAA72682.1| cspB [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420530|gb|AAL20906.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|56127350|gb|AAV76856.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|161362795|gb|ABX66563.1| hypothetical protein SPAB_01147 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|197093496|emb|CAR58956.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|205272093|emb|CAR36945.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|206708295|emb|CAR32598.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|224468034|gb|ACN45864.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|261247161|emb|CBG24984.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. D23580]
 gi|267993987|gb|ACY88872.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|301158509|emb|CBW18019.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. SL1344]
 gi|312912986|dbj|BAJ36960.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. T000240]
 gi|320085386|emb|CBY95167.1| Cold shock-like protein cspG CPS-G [Salmonella enterica subsp.
          enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224641|gb|EFX49704.1| Cold shock protein CspG [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322616988|gb|EFY13896.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 315996572]
 gi|322618228|gb|EFY15120.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-1]
 gi|322625898|gb|EFY22717.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-3]
 gi|322626350|gb|EFY23160.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-4]
 gi|322632765|gb|EFY29510.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 515920-1]
 gi|322639107|gb|EFY35800.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 515920-2]
 gi|322640379|gb|EFY37036.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 531954]
 gi|322647216|gb|EFY43715.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. NC_MB110209-0054]
 gi|322648415|gb|EFY44868.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. OH_2009072675]
 gi|322655544|gb|EFY51852.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. CASC_09SCPH15965]
 gi|322660322|gb|EFY56560.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 19N]
 gi|322663003|gb|EFY59210.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 81038-01]
 gi|322668188|gb|EFY64347.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. MD_MDA09249507]
 gi|322674053|gb|EFY70147.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 414877]
 gi|322675595|gb|EFY71669.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 366867]
 gi|322682994|gb|EFY79010.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 413180]
 gi|322686688|gb|EFY82666.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 446600]
 gi|323130275|gb|ADX17705.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
 gi|323195075|gb|EFZ80259.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 609458-1]
 gi|323197875|gb|EFZ83000.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 556150-1]
 gi|323204480|gb|EFZ89486.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 609460]
 gi|323207570|gb|EFZ92518.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 507440-20]
 gi|323210991|gb|EFZ95851.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 556152]
 gi|323217555|gb|EGA02274.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB101509-0077]
 gi|323222458|gb|EGA06829.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB102109-0047]
 gi|323227477|gb|EGA11639.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB110209-0055]
 gi|323231577|gb|EGA15690.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB111609-0052]
 gi|323236020|gb|EGA20099.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 2009083312]
 gi|323240590|gb|EGA24633.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 2009085258]
 gi|323245482|gb|EGA29482.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 315731156]
 gi|323247600|gb|EGA31551.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2009159199]
 gi|323254428|gb|EGA38244.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008282]
 gi|323257760|gb|EGA41440.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008283]
 gi|323262133|gb|EGA45696.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008284]
 gi|323266256|gb|EGA49746.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008285]
 gi|323270733|gb|EGA54172.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008287]
 gi|326622839|gb|EGE29184.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Dublin str. 3246]
 gi|326627359|gb|EGE33702.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
 gi|332988884|gb|AEF07867.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
          Length = 70

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+NP+KG+GFITP+   +   DVF+H SA+ S     L E Q V +   Q
Sbjct: 7  GLVKWFNPEKGFGFITPK---DGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQ 57


>gi|167565863|ref|ZP_02358779.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
          EO147]
 gi|167574414|ref|ZP_02367288.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
          C6786]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+   + GDD+F H S +   G   L E Q V+Y+
Sbjct: 4  GTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAENQKVSYE 51


>gi|52843046|ref|YP_096845.1| cold shock transcriptional regulator CspA [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
 gi|52630157|gb|AAU28898.1| cold shock transcriptional regulator CspA [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
          Length = 71

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH-RSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N DKGYGFI+ +      DDVF+H RS V++AG   L EGQ V +  V   A G
Sbjct: 7  GHVKWFNDDKGYGFISRDNGQ---DDVFVHFRSIVSNAGRKTLLEGQRVEF-LVTKGAKG 62

Query: 64 KYSAE 68
            + E
Sbjct: 63 LQAEE 67


>gi|108763112|ref|YP_629869.1| cold-shock protein CspA [Myxococcus xanthus DK 1622]
 gi|4193390|gb|AAD10033.1| CspA [Myxococcus xanthus]
 gi|108466992|gb|ABF92177.1| cold-shock protein CspA [Myxococcus xanthus DK 1622]
          Length = 68

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +   + G DVF H +A+ + G   L EGQ V ++  +      
Sbjct: 4  GTVKWFNDAKGFGFIAQD---DGGADVFCHHTAIQTDGFRTLAEGQKVEFETRKGPKG-- 58

Query: 65 YSAENLKLV 73
            AEN+++V
Sbjct: 59 LQAENVRVV 67


>gi|116620045|ref|YP_822201.1| cold-shock DNA-binding protein family protein [Candidatus
          Solibacter usitatus Ellin6076]
 gi|116223207|gb|ABJ81916.1| cold-shock DNA-binding protein family [Candidatus Solibacter
          usitatus Ellin6076]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          M   G++KW+N  KG+GFI      E+G+DVF+H SA++++G  +L EG  V++
Sbjct: 1  MRETGTVKWFNAGKGFGFI----QRENGEDVFVHFSAISASGYRSLDEGARVSF 50


>gi|253997134|ref|YP_003049198.1| cold-shock DNA-binding domain-containing protein [Methylotenera
          mobilis JLW8]
 gi|253983813|gb|ACT48671.1| cold-shock DNA-binding domain protein [Methylotenera mobilis
          JLW8]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+     GDD+F H SA+  +G  +L E + V++D V +   GK
Sbjct: 4  GLVKWFNDSKGFGFITPDA---GGDDLFAHFSAINDSGYKSLKENERVSFD-VTDGPKGK 59

Query: 65 YSAENLKL 72
           ++   K+
Sbjct: 60 QASNIQKI 67


>gi|84497535|ref|ZP_00996357.1| Putative transcriptional regulator cold shock protein [Janibacter
           sp. HTCC2649]
 gi|84382423|gb|EAP98305.1| Putative transcriptional regulator cold shock protein [Janibacter
           sp. HTCC2649]
          Length = 314

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 5/50 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G++ WY P KGYGFITP+G    G ++F+H SA+   G+  L+E Q V +
Sbjct: 81  GTVSWYEPSKGYGFITPDG---GGTEIFVHSSAIVGGGV--LSEAQRVAF 125



 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           G++ WY+  KG+GFIT   S   G DVF+H   +A  GL  L EG  VTYD V
Sbjct: 158 GTVSWYDGGKGFGFIT---SDSGGPDVFVHVRELAD-GLTELGEGDRVTYDVV 206



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQND 60
          G+++W++ D+G+GFI      +  +D+++H S + SA     L EGQ+V ++  + D
Sbjct: 4  GTVRWFDTDRGFGFI---ALGQDAEDLYVHASEIVSADAMKVLREGQVVEFEVGEGD 57


>gi|15600936|ref|NP_232566.1| cold shock transcriptional regulator CspA [Vibrio cholerae O1
          biovar eltor str. N16961]
 gi|121587988|ref|ZP_01677741.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          2740-80]
 gi|121728193|ref|ZP_01681227.1| cold shock transcriptional regulator CspA [Vibrio cholerae V52]
 gi|147671768|ref|YP_001215947.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395]
 gi|153214405|ref|ZP_01949376.1| cold shock transcriptional regulator CspA [Vibrio cholerae 1587]
 gi|153802385|ref|ZP_01956971.1| cold shock transcriptional regulator CspA [Vibrio cholerae MZO-3]
 gi|153816822|ref|ZP_01969489.1| cold shock transcriptional regulator CspA [Vibrio cholerae NCTC
          8457]
 gi|153825020|ref|ZP_01977687.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2]
 gi|153830344|ref|ZP_01983011.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          623-39]
 gi|227811792|ref|YP_002811802.1| cold shock transcriptional regulator CspA [Vibrio cholerae M66-2]
 gi|229506667|ref|ZP_04396176.1| cold shock protein CspG [Vibrio cholerae BX 330286]
 gi|229510535|ref|ZP_04400015.1| cold shock protein CspG [Vibrio cholerae B33]
 gi|229514666|ref|ZP_04404127.1| cold shock protein CspG [Vibrio cholerae TMA 21]
 gi|229517333|ref|ZP_04406778.1| cold shock protein CspG [Vibrio cholerae RC9]
 gi|229522836|ref|ZP_04412250.1| cold shock protein CspG [Vibrio cholerae TM 11079-80]
 gi|229527853|ref|ZP_04417244.1| cold shock protein CspG [Vibrio cholerae 12129(1)]
 gi|229605144|ref|YP_002875848.1| cold shock protein CspG [Vibrio cholerae MJ-1236]
 gi|254286659|ref|ZP_04961614.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          AM-19226]
 gi|254850434|ref|ZP_05239784.1| cold shock transcriptional regulator CspA [Vibrio cholerae MO10]
 gi|255746020|ref|ZP_05419967.1| cold shock protein CspG [Vibrio cholera CIRS 101]
 gi|261212663|ref|ZP_05926947.1| cold shock protein CspG [Vibrio sp. RC341]
 gi|262162141|ref|ZP_06031156.1| cold shock protein CspG [Vibrio cholerae INDRE 91/1]
 gi|262164784|ref|ZP_06032522.1| cold shock protein CspG [Vibrio mimicus VM223]
 gi|262167803|ref|ZP_06035504.1| cold shock protein CspG [Vibrio cholerae RC27]
 gi|262173002|ref|ZP_06040679.1| cold shock protein CspG [Vibrio mimicus MB-451]
 gi|262189592|ref|ZP_06047992.1| cold shock protein CspG [Vibrio cholerae CT 5369-93]
 gi|262403347|ref|ZP_06079907.1| cold shock protein CspG [Vibrio sp. RC586]
 gi|297579705|ref|ZP_06941632.1| cold shock transcriptional regulator CspA [Vibrio cholerae RC385]
 gi|298500023|ref|ZP_07009829.1| cold shock transcriptional regulator CspA [Vibrio cholerae MAK
          757]
 gi|20138011|sp|Q9KN00|CSPA_VIBCH RecName: Full=Cold shock-like protein CspA
 gi|9657556|gb|AAF96079.1| cold shock transcriptional regulator CspA [Vibrio cholerae O1
          biovar El Tor str. N16961]
 gi|121547786|gb|EAX57875.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          2740-80]
 gi|121629516|gb|EAX61940.1| cold shock transcriptional regulator CspA [Vibrio cholerae V52]
 gi|124115354|gb|EAY34174.1| cold shock transcriptional regulator CspA [Vibrio cholerae 1587]
 gi|124122104|gb|EAY40847.1| cold shock transcriptional regulator CspA [Vibrio cholerae MZO-3]
 gi|126512625|gb|EAZ75219.1| cold shock transcriptional regulator CspA [Vibrio cholerae NCTC
          8457]
 gi|146314151|gb|ABQ18691.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395]
 gi|148874187|gb|EDL72322.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          623-39]
 gi|149741345|gb|EDM55379.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2]
 gi|150423243|gb|EDN15189.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          AM-19226]
 gi|227010934|gb|ACP07145.1| cold shock transcriptional regulator CspA [Vibrio cholerae M66-2]
 gi|227014793|gb|ACP11002.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395]
 gi|229334215|gb|EEN99700.1| cold shock protein CspG [Vibrio cholerae 12129(1)]
 gi|229340053|gb|EEO05061.1| cold shock protein CspG [Vibrio cholerae TM 11079-80]
 gi|229345369|gb|EEO10342.1| cold shock protein CspG [Vibrio cholerae RC9]
 gi|229348646|gb|EEO13604.1| cold shock protein CspG [Vibrio cholerae TMA 21]
 gi|229352980|gb|EEO17920.1| cold shock protein CspG [Vibrio cholerae B33]
 gi|229357018|gb|EEO21936.1| cold shock protein CspG [Vibrio cholerae BX 330286]
 gi|229371630|gb|ACQ62052.1| cold shock protein CspG [Vibrio cholerae MJ-1236]
 gi|254846139|gb|EET24553.1| cold shock transcriptional regulator CspA [Vibrio cholerae MO10]
 gi|255735774|gb|EET91172.1| cold shock protein CspG [Vibrio cholera CIRS 101]
 gi|260837728|gb|EEX64405.1| cold shock protein CspG [Vibrio sp. RC341]
 gi|261890360|gb|EEY36347.1| cold shock protein CspG [Vibrio mimicus MB-451]
 gi|262023711|gb|EEY42411.1| cold shock protein CspG [Vibrio cholerae RC27]
 gi|262027164|gb|EEY45831.1| cold shock protein CspG [Vibrio mimicus VM223]
 gi|262028216|gb|EEY46874.1| cold shock protein CspG [Vibrio cholerae INDRE 91/1]
 gi|262034524|gb|EEY52864.1| cold shock protein CspG [Vibrio cholerae CT 5369-93]
 gi|262350846|gb|EEY99979.1| cold shock protein CspG [Vibrio sp. RC586]
 gi|297535351|gb|EFH74185.1| cold shock transcriptional regulator CspA [Vibrio cholerae RC385]
 gi|297542004|gb|EFH78055.1| cold shock transcriptional regulator CspA [Vibrio cholerae MAK
          757]
 gi|327485389|gb|AEA79795.1| Cold shock protein CspG [Vibrio cholerae LMA3894-4]
          Length = 70

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFI+ +     G DVF+H  ++ S G   L EGQ V++  V+    G 
Sbjct: 7  GSVKWFNETKGFGFISQD---NGGQDVFVHFKSIVSEGFKTLAEGQRVSFT-VEQGKKGP 62

Query: 65 YSAENLKL 72
           +A+   L
Sbjct: 63 QAAQVTAL 70


>gi|209517087|ref|ZP_03265934.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295677385|ref|YP_003605909.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|209502480|gb|EEA02489.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295437228|gb|ADG16398.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
          Length = 67

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   + GDD+F H S +   G   L E Q V+++  Q
Sbjct: 4  GTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAENQKVSFETKQ 54


>gi|269125062|ref|YP_003298432.1| cold-shock DNA-binding domain-containing protein [Thermomonospora
          curvata DSM 43183]
 gi|268310020|gb|ACY96394.1| cold-shock DNA-binding domain protein [Thermomonospora curvata
          DSM 43183]
          Length = 66

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G   L +GQ V ++   ++
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GRDVFVHYSAILMDGYRTLEQGQRVEFEIAHSE 55


>gi|240145038|ref|ZP_04743639.1| cold shock protein B [Roseburia intestinalis L1-82]
 gi|257202861|gb|EEV01146.1| cold shock protein B [Roseburia intestinalis L1-82]
 gi|291535362|emb|CBL08474.1| cold-shock DNA-binding protein family [Roseburia intestinalis
          M50/1]
 gi|291538173|emb|CBL11284.1| cold-shock DNA-binding protein family [Roseburia intestinalis
          XB6B4]
          Length = 67

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N  KGYGFI    S E G+DVF+H SA+   G   L +G+ V ++  + +
Sbjct: 1  MQQGTVKWFNAKKGYGFI----SDEQGNDVFVHFSALNMDGFKELKDGERVEFEVTEGE 55


>gi|284007198|emb|CBA72487.1| cold shock-like protein [Arsenophonus nasoniae]
          Length = 111

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G +KW+N  KG+GFITP   ++   DVF+H SA+   G   L EGQ V +
Sbjct: 47 KGQVKWFNESKGFGFITP---SDGSKDVFVHFSAIQGNGFKTLAEGQNVEF 94


>gi|77360127|ref|YP_339702.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Pseudoalteromonas
          haloplanktis TAC125]
 gi|332534950|ref|ZP_08410769.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505]
 gi|76875038|emb|CAI86259.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Pseudoalteromonas
          haloplanktis TAC125]
 gi|332035623|gb|EGI72114.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505]
          Length = 67

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M   G +K++N  KG+GFI      E+G DVF+H SA+  +G   L+EGQ VT+   Q
Sbjct: 1  MSVTGKVKFFNEAKGFGFI----EQENGPDVFVHFSAITGSGFRTLSEGQAVTFSIKQ 54


>gi|293396765|ref|ZP_06641041.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
 gi|291421029|gb|EFE94282.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
          Length = 69

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      + G DVF+H SA+ + G   L EGQ V Y  +Q+   G 
Sbjct: 6  GQVKWFNESKGFGFIEQH---DGGKDVFVHFSAIMTDGFKTLAEGQRVEYT-IQDSPRGP 61

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 62 AAANVVAL 69


>gi|229028904|ref|ZP_04185005.1| Cold shock protein cspB [Bacillus cereus AH1271]
 gi|229171874|ref|ZP_04299443.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|210077339|gb|ACJ06956.1| cold shock protein [Bacillus thuringiensis serovar azorensis]
 gi|228611584|gb|EEK68837.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|228732475|gb|EEL83356.1| Cold shock protein cspB [Bacillus cereus AH1271]
          Length = 67

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++    D
Sbjct: 1  MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFEI--ED 54

Query: 61 ANGKYSAENL 70
           N    A+N+
Sbjct: 55 GNRGPQAKNV 64


>gi|163800347|ref|ZP_02194248.1| cold shock DNA-binding domain protein [Vibrio sp. AND4]
 gi|159175790|gb|EDP60584.1| cold shock DNA-binding domain protein [Vibrio sp. AND4]
          Length = 69

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V ++  Q
Sbjct: 7  GTVKWFNETKGFGFI----QQENGPDVFAHFSAIQGDGFKTLAEGQKVEFEVTQ 56


>gi|154496406|ref|ZP_02035102.1| hypothetical protein BACCAP_00695 [Bacteroides capillosus ATCC
          29799]
 gi|150274489|gb|EDN01566.1| hypothetical protein BACCAP_00695 [Bacteroides capillosus ATCC
          29799]
          Length = 70

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KG+GFI+   + +   DVF+H SA+   G   L EGQ V+YD   +  
Sbjct: 1  MYQGTVKWFNETKGFGFIS---NDDGSGDVFVHFSAILVDGFKTLAEGQKVSYDTEPDPK 57

Query: 62 N-GKYSAENLK 71
          + GK  A N++
Sbjct: 58 DAGKLRAVNVR 68


>gi|77919964|ref|YP_357779.1| cold shock proteins [Pelobacter carbinolicus DSM 2380]
 gi|77546047|gb|ABA89609.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
          DSM 2380]
          Length = 66

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G +KW+N  KG+GFI      + G DVF+H S + + G  +LT+GQ V +D +++
Sbjct: 3  EGVVKWFNDAKGFGFI----EQQDGPDVFVHFSVIQAEGFKSLTQGQQVEFDIIES 54


>gi|15601687|ref|NP_233318.1| cold shock domain-contain protein [Vibrio cholerae O1 biovar
          eltor str. N16961]
 gi|121586695|ref|ZP_01676479.1| cold shock domain family protein [Vibrio cholerae 2740-80]
 gi|121726380|ref|ZP_01679654.1| cold shock domain family protein [Vibrio cholerae V52]
 gi|147671933|ref|YP_001215147.1| cold shock domain-contain protein [Vibrio cholerae O395]
 gi|153212370|ref|ZP_01948152.1| cold shock domain family protein [Vibrio cholerae 1587]
 gi|153801420|ref|ZP_01956006.1| cold shock domain family protein [Vibrio cholerae MZO-3]
 gi|153818328|ref|ZP_01970995.1| cold shock domain family protein [Vibrio cholerae NCTC 8457]
 gi|153821071|ref|ZP_01973738.1| cold shock domain family protein [Vibrio cholerae B33]
 gi|153828039|ref|ZP_01980706.1| cold shock domain family protein [Vibrio cholerae 623-39]
 gi|227812499|ref|YP_002812509.1| cold shock domain family protein [Vibrio cholerae M66-2]
 gi|229505926|ref|ZP_04395435.1| cold shock protein CspA [Vibrio cholerae BX 330286]
 gi|229510220|ref|ZP_04399700.1| cold shock protein CspA [Vibrio cholerae B33]
 gi|229514346|ref|ZP_04403807.1| cold shock protein CspA [Vibrio cholerae TMA 21]
 gi|229517650|ref|ZP_04407095.1| cold shock protein CspA [Vibrio cholerae RC9]
 gi|229522460|ref|ZP_04411876.1| cold shock protein CspA [Vibrio cholerae TM 11079-80]
 gi|229526515|ref|ZP_04415919.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
 gi|229528166|ref|ZP_04417557.1| cold shock protein CspA [Vibrio cholerae 12129(1)]
 gi|229605458|ref|YP_002876162.1| cold shock protein CspA [Vibrio cholerae MJ-1236]
 gi|254224759|ref|ZP_04918375.1| cold shock domain family protein [Vibrio cholerae V51]
 gi|254284560|ref|ZP_04959527.1| cold shock domain family protein [Vibrio cholerae AM-19226]
 gi|254850097|ref|ZP_05239447.1| cold-shock protein CspV [Vibrio cholerae MO10]
 gi|255746324|ref|ZP_05420271.1| cold shock protein CspA [Vibrio cholera CIRS 101]
 gi|262158205|ref|ZP_06029323.1| cold shock protein CspA [Vibrio cholerae INDRE 91/1]
 gi|262169196|ref|ZP_06036889.1| cold shock protein CspA [Vibrio cholerae RC27]
 gi|297580016|ref|ZP_06941943.1| cold-shock protein CspV [Vibrio cholerae RC385]
 gi|298499709|ref|ZP_07009515.1| cold shock domain family protein [Vibrio cholerae MAK 757]
 gi|20138009|sp|Q9KL16|CSPV_VIBCH RecName: Full=Cold shock protein CspV
 gi|15425982|gb|AAK97640.1|AF409091_1 cold-shock protein CspV [Vibrio cholerae]
 gi|9658370|gb|AAF96830.1| cold shock domain family protein [Vibrio cholerae O1 biovar El
          Tor str. N16961]
 gi|121549123|gb|EAX59158.1| cold shock domain family protein [Vibrio cholerae 2740-80]
 gi|121631128|gb|EAX63503.1| cold shock domain family protein [Vibrio cholerae V52]
 gi|124116578|gb|EAY35398.1| cold shock domain family protein [Vibrio cholerae 1587]
 gi|124123086|gb|EAY41829.1| cold shock domain family protein [Vibrio cholerae MZO-3]
 gi|125622822|gb|EAZ51140.1| cold shock domain family protein [Vibrio cholerae V51]
 gi|126511141|gb|EAZ73735.1| cold shock domain family protein [Vibrio cholerae NCTC 8457]
 gi|126521445|gb|EAZ78668.1| cold shock domain family protein [Vibrio cholerae B33]
 gi|146314316|gb|ABQ18856.1| cold shock domain family protein [Vibrio cholerae O395]
 gi|148876448|gb|EDL74583.1| cold shock domain family protein [Vibrio cholerae 623-39]
 gi|150425345|gb|EDN17121.1| cold shock domain family protein [Vibrio cholerae AM-19226]
 gi|227011641|gb|ACP07852.1| cold shock domain family protein [Vibrio cholerae M66-2]
 gi|227015580|gb|ACP11789.1| cold shock domain family protein [Vibrio cholerae O395]
 gi|229334528|gb|EEO00014.1| cold shock protein CspA [Vibrio cholerae 12129(1)]
 gi|229336673|gb|EEO01691.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
 gi|229340445|gb|EEO05451.1| cold shock protein CspA [Vibrio cholerae TM 11079-80]
 gi|229345686|gb|EEO10659.1| cold shock protein CspA [Vibrio cholerae RC9]
 gi|229348326|gb|EEO13284.1| cold shock protein CspA [Vibrio cholerae TMA 21]
 gi|229352665|gb|EEO17605.1| cold shock protein CspA [Vibrio cholerae B33]
 gi|229356277|gb|EEO21195.1| cold shock protein CspA [Vibrio cholerae BX 330286]
 gi|229371944|gb|ACQ62366.1| cold shock protein CspA [Vibrio cholerae MJ-1236]
 gi|254845802|gb|EET24216.1| cold-shock protein CspV [Vibrio cholerae MO10]
 gi|255736078|gb|EET91476.1| cold shock protein CspA [Vibrio cholera CIRS 101]
 gi|262022477|gb|EEY41185.1| cold shock protein CspA [Vibrio cholerae RC27]
 gi|262030083|gb|EEY48729.1| cold shock protein CspA [Vibrio cholerae INDRE 91/1]
 gi|297535662|gb|EFH74496.1| cold-shock protein CspV [Vibrio cholerae RC385]
 gi|297541690|gb|EFH77741.1| cold shock domain family protein [Vibrio cholerae MAK 757]
          Length = 70

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          GS+KW+N  KG+GF+T +     G+DVF+H +++ S G   L EGQ V++
Sbjct: 7  GSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLAEGQRVSF 53


>gi|302386621|ref|YP_003822443.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
 gi|302197249|gb|ADL04820.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
          Length = 65

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          +G++KW+N  KGYGFI    S E G+DVF+H S +   G  +L EG  V +D V
Sbjct: 2  KGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLDEGAAVEFDVV 51


>gi|161502877|ref|YP_001569989.1| hypothetical protein SARI_00934 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864224|gb|ABX20847.1| hypothetical protein SARI_00934 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 70

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+NP+KG+GFITP+  ++   DVF+H SA+ S     L E Q V +   Q
Sbjct: 7  GLVKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFRTLNENQEVEFSVEQ 57


>gi|37525576|ref|NP_928920.1| hypothetical protein plu1632 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36785004|emb|CAE13925.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 80

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KGYGFI+P+   + G D+F++R A+A+    +LTEGQ V +  ++
Sbjct: 17 GRVKWFDERKGYGFISPQ---DGGQDIFVNRKAIANTKNKSLTEGQDVEFSIIR 67


>gi|118579190|ref|YP_900440.1| cold-shock DNA-binding domain-containing protein [Pelobacter
          propionicus DSM 2379]
 gi|118501900|gb|ABK98382.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM
          2379]
          Length = 67

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI  +   +   DVF+H SA+  +G   L EG+ VTY+ V+
Sbjct: 4  GTVKWFNESKGFGFIEQD---DGSGDVFVHFSAITGSGFKTLAEGEKVTYNVVK 54


>gi|125560025|gb|EAZ05473.1| hypothetical protein OsI_27689 [Oryza sativa Indica Group]
          Length = 193

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 38/51 (74%), Gaps = 3/51 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G++KW++  KG+GFITP+   + G+D+F+H+S++ S G  +L +G +V +
Sbjct: 7  KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEF 54


>gi|77457312|ref|YP_346817.1| cold-shock DNA-binding protein family protein [Pseudomonas
          fluorescens Pf0-1]
 gi|77381315|gb|ABA72828.1| major cold shock protein [Pseudomonas fluorescens Pf0-1]
          Length = 69

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI      E G DVF+H  A+   G  +LTEGQ V Y  V+
Sbjct: 7  GNVKWFNDAKGYGFI----QREDGVDVFVHYRAIRGEGHRSLTEGQQVEYAVVE 56


>gi|54294960|ref|YP_127375.1| hypothetical protein lpl2039 [Legionella pneumophila str. Lens]
 gi|53754792|emb|CAH16279.1| hypothetical protein lpl2039 [Legionella pneumophila str. Lens]
          Length = 69

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI  EG    G DVF H   ++S+G   LTEGQ V +   Q
Sbjct: 7  GVVKWFNEIKGFGFIEQEG----GPDVFAHFKEISSSGFKTLTEGQRVQFIVTQ 56


>gi|117927601|ref|YP_872152.1| cold-shock DNA-binding protein family protein [Acidothermus
          cellulolyticus 11B]
 gi|117648064|gb|ABK52166.1| cold-shock DNA-binding protein family [Acidothermus
          cellulolyticus 11B]
          Length = 92

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          V +G++KW+N +KG+GFI  +G    G DVF+H +A+   G   L + Q V ++ VQ
Sbjct: 25 VAQGTVKWFNAEKGFGFIAVDG----GQDVFVHYTAIQMEGYKTLDQNQRVEFEIVQ 77


>gi|311693752|gb|ADP96625.1| cold shock, CspA [marine bacterium HP15]
          Length = 76

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFIT     ESG DVF+H SA+   G   L EGQ V +   Q     +
Sbjct: 14 GNVKFFNEAKGFGFIT----RESGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKGPQ 69

Query: 65 YSAENL 70
            AEN+
Sbjct: 70 --AENV 73


>gi|254254112|ref|ZP_04947429.1| Cold shock protein [Burkholderia dolosa AUO158]
 gi|124898757|gb|EAY70600.1| Cold shock protein [Burkholderia dolosa AUO158]
          Length = 83

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           V  G++KW+N  KG+GFI+P+     GDD+F H S +   G   L E Q V+Y+
Sbjct: 16 FVDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAENQKVSYE 67


>gi|148263031|ref|YP_001229737.1| cold-shock DNA-binding domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146396531|gb|ABQ25164.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
          Rf4]
          Length = 68

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++ +G +KW+N  KG+GF+      E+G+DVF+H SA+   G  +L EG  VT++  +
Sbjct: 2  VMEKGKVKWFNDSKGFGFL----EQENGEDVFVHFSAITGDGFKSLNEGDNVTFEVTK 55


>gi|293606147|ref|ZP_06688512.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
          43553]
 gi|311107159|ref|YP_003980012.1| cold-shock DNA-binding domain-containing protein 3 [Achromobacter
          xylosoxidans A8]
 gi|292815602|gb|EFF74718.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
          43553]
 gi|310761848|gb|ADP17297.1| cold-shock DNA-binding domain protein 3 [Achromobacter
          xylosoxidans A8]
          Length = 67

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KW+N +KGYGFITPE     G D+F H S +  +G  +L E Q V++
Sbjct: 1  METGVVKWFNSEKGYGFITPEA---GGKDLFAHFSEIQGSGFKSLEENQRVSF 50


>gi|271961744|ref|YP_003335940.1| cold-shock DNA-binding domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270504919|gb|ACZ83197.1| putative cold-shock DNA-binding domain protein [Streptosporangium
          roseum DSM 43021]
          Length = 67

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P+G      DVF+H S +   G  +L +GQ V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIAPDGGA---PDVFVHFSEIQGNGYRSLEDGQRVEFEITQ 54


>gi|261339213|ref|ZP_05967071.1| hypothetical protein ENTCAN_05441 [Enterobacter cancerogenus ATCC
          35316]
 gi|288319062|gb|EFC58000.1| cold shock domain protein CspD [Enterobacter cancerogenus ATCC
          35316]
          Length = 73

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQ 54


>gi|126698954|ref|YP_001087851.1| putative cold shock protein [Clostridium difficile 630]
 gi|254974900|ref|ZP_05271372.1| putative cold shock protein [Clostridium difficile QCD-66c26]
 gi|255092289|ref|ZP_05321767.1| putative cold shock protein [Clostridium difficile CIP 107932]
 gi|255100373|ref|ZP_05329350.1| putative cold shock protein [Clostridium difficile QCD-63q42]
 gi|255306315|ref|ZP_05350486.1| putative cold shock protein [Clostridium difficile ATCC 43255]
 gi|255314027|ref|ZP_05355610.1| putative cold shock protein [Clostridium difficile QCD-76w55]
 gi|255516707|ref|ZP_05384383.1| putative cold shock protein [Clostridium difficile QCD-97b34]
 gi|255649806|ref|ZP_05396708.1| putative cold shock protein [Clostridium difficile QCD-37x79]
 gi|255655364|ref|ZP_05400773.1| putative cold shock protein [Clostridium difficile QCD-23m63]
 gi|260682964|ref|YP_003214249.1| putative cold shock protein [Clostridium difficile CD196]
 gi|260686562|ref|YP_003217695.1| putative cold shock protein [Clostridium difficile R20291]
 gi|296451352|ref|ZP_06893090.1| cold shock protein CspA [Clostridium difficile NAP08]
 gi|296880298|ref|ZP_06904263.1| cold shock protein CspA [Clostridium difficile NAP07]
 gi|306519907|ref|ZP_07406254.1| putative cold shock protein [Clostridium difficile QCD-32g58]
 gi|115250391|emb|CAJ68213.1| Cold shock protein CspB [Clostridium difficile]
 gi|260209127|emb|CBA62316.1| putative cold shock protein [Clostridium difficile CD196]
 gi|260212578|emb|CBE03568.1| putative cold shock protein [Clostridium difficile R20291]
 gi|296259768|gb|EFH06625.1| cold shock protein CspA [Clostridium difficile NAP08]
 gi|296428741|gb|EFH14623.1| cold shock protein CspA [Clostridium difficile NAP07]
          Length = 66

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI+ EG      DVF+H SA+   G   L EGQ V ++ V + A G 
Sbjct: 4  GVVKWFNNEKGFGFISVEGE----GDVFVHFSAITGDGYKTLEEGQSVEFEVV-DGAKGP 58

Query: 65 YSAENLKL 72
           +A  ++L
Sbjct: 59 QAANVVRL 66


>gi|1763348|gb|AAC47478.1| LIN-28 [Caenorhabditis remanei]
          Length = 239

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS KW+N  KGYGF+  + + E   D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 55  GSCKWFNVSKGYGFVIDDITRE---DLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110


>gi|51244785|ref|YP_064669.1| cold shock protein [Desulfotalea psychrophila LSv54]
 gi|50875822|emb|CAG35662.1| probable cold shock protein [Desulfotalea psychrophila LSv54]
          Length = 66

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           G +KW+N  KG+GFI  EG    GDD+F+H +++ ++G   L EG  V++D
Sbjct: 3  EGIVKWFNDAKGFGFIEQEG----GDDLFVHHTSINASGFKTLEEGARVSFD 50


>gi|51245724|ref|YP_065608.1| cold-shock protein (CspB) [Desulfotalea psychrophila LSv54]
 gi|50876761|emb|CAG36601.1| probable cold-shock protein (CspB) [Desulfotalea psychrophila
          LSv54]
          Length = 66

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 5/64 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI  EG    GDD+F+H +++ ++G   L EG  V+++ +++ A G
Sbjct: 3  EGIVKWFNDAKGFGFIEQEG----GDDLFVHHTSINASGFKTLEEGARVSFE-IEDGAKG 57

Query: 64 KYSA 67
            +A
Sbjct: 58 PAAA 61


>gi|307132939|ref|YP_003884955.1| Cold shock protein [Dickeya dadantii 3937]
 gi|306530468|gb|ADN00399.1| Cold shock protein [Dickeya dadantii 3937]
          Length = 70

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFITP    +   DVF+H SA+ S     L EGQ V +  + N   G 
Sbjct: 7  GSVKWFNETKGFGFITP---ADGSKDVFVHFSAIQSDSFKTLYEGQKVEF-VIGNGPKGP 62

Query: 65 YSAENL 70
           SAEN+
Sbjct: 63 -SAENV 67


>gi|330813601|ref|YP_004357840.1| cold shock protein CspA [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486696|gb|AEA81101.1| cold shock protein CspA [Candidatus Pelagibacter sp. IMCC9063]
          Length = 68

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N  KGYGFI  +   +   DVF+H SAV  +G+  L EG ++++D    D
Sbjct: 1  MSIKGKVKWFNGSKGYGFIERDDKEK---DVFVHMSAVKDSGVDYLDEGDVLSFDI--ED 55

Query: 61 ANGKYSAENLK 71
               SA NLK
Sbjct: 56 GQKGPSAVNLK 66


>gi|296111917|ref|YP_003622299.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc
          kimchii IMSNU 11154]
 gi|295833449|gb|ADG41330.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc
          kimchii IMSNU 11154]
          Length = 74

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 5/74 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K +  ++GYG+ITP+   E G+DVF+H + +   G  +L +G+ VTY  VQ   N  
Sbjct: 4  GTVKIWQKERGYGYITPD---EGGEDVFVHFNGIDMDGFKSLNQGEKVTYQLVQGYKN-- 58

Query: 65 YSAENLKLVPKSSN 78
          Y A  ++ V K ++
Sbjct: 59 YQAAQVQPVMKKAS 72


>gi|253581358|ref|ZP_04858584.1| cold-shock protein [Fusobacterium varium ATCC 27725]
 gi|257470862|ref|ZP_05634952.1| cold-shock DNA-binding protein family protein [Fusobacterium
          ulcerans ATCC 49185]
 gi|317065065|ref|ZP_07929550.1| cold shock protein CspB [Fusobacterium ulcerans ATCC 49185]
 gi|251836722|gb|EES65256.1| cold-shock protein [Fusobacterium varium ATCC 27725]
 gi|313690741|gb|EFS27576.1| cold shock protein CspB [Fusobacterium ulcerans ATCC 49185]
          Length = 66

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GF+T    +E G D F+H + +   G   L EGQ VT++
Sbjct: 3  KGTVKWFNKEKGFGFLT----SEDGADYFVHFTGIVGEGFRTLEEGQEVTFE 50


>gi|77166067|ref|YP_344592.1| cold-shock protein, DNA-binding [Nitrosococcus oceani ATCC 19707]
 gi|76884381|gb|ABA59062.1| cold-shock DNA-binding protein family [Nitrosococcus oceani ATCC
          19707]
          Length = 69

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI  EG    G D+F+H  ++  +G   L EGQ V++  VQ
Sbjct: 7  GTVKWFNDSKGYGFIQREG----GSDLFVHYRSITGSGHRTLKEGQQVSFIEVQ 56


>gi|108761073|ref|YP_631772.1| cold-shock protein CspD [Myxococcus xanthus DK 1622]
 gi|4193396|gb|AAD10036.1| CspD [Myxococcus xanthus]
 gi|108464953|gb|ABF90138.1| cold-shock protein CspD [Myxococcus xanthus DK 1622]
          Length = 67

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+T +G    G+DVF H +A+   G   L EGQ V ++  +
Sbjct: 4  GTVKWFNDAKGFGFLTQDG---GGEDVFCHHTAINMDGFRTLQEGQKVEFEVTR 54


>gi|302392640|ref|YP_003828460.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
 gi|302204717|gb|ADL13395.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
          Length = 66

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 6/60 (10%)

Query: 2  VHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW++ +KGYGFI  PE      DDVF+H SA+   G  +L EG+ V ++ V+ D
Sbjct: 1  METGTVKWFDSNKGYGFIERPEE-----DDVFVHFSAIQEDGFKDLEEGEEVEFNIVEGD 55


>gi|262368483|ref|ZP_06061812.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          johnsonii SH046]
 gi|262316161|gb|EEY97199.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          johnsonii SH046]
          Length = 69

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          +  G++KW+N  KG+GFI    S+++G+DVF H S + S G   L EGQ V +  V
Sbjct: 4  ITTGTVKWFNETKGFGFI----SSDTGEDVFAHFSEIQSNGFKVLNEGQRVQFTIV 55


>gi|240948086|ref|ZP_04752496.1| cold shock-like protein CspC [Actinobacillus minor NM305]
 gi|257465091|ref|ZP_05629462.1| cold shock-like protein CspC [Actinobacillus minor 202]
 gi|240297566|gb|EER48058.1| cold shock-like protein CspC [Actinobacillus minor NM305]
 gi|257450751|gb|EEV24794.1| cold shock-like protein CspC [Actinobacillus minor 202]
          Length = 70

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDANG 63
          G++KW+N  KG+GFI P+   + G+D+F+H SA+ S G +  L EG  V ++   +D   
Sbjct: 6  GTVKWFNATKGFGFIAPD---QGGEDIFVHFSAIESNGGYRTLEEGAKVEFEVQASDRGA 62

Query: 64 KYSAENLKLV 73
            SA N+K +
Sbjct: 63 --SAANVKKI 70


>gi|238765641|ref|ZP_04626525.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
 gi|238696140|gb|EEP88973.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
          Length = 57

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N DKG+GFITP    +   DVF+H SA+ S     L EGQ V +
Sbjct: 7  GLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEF 53


>gi|329940599|ref|ZP_08289880.1| cold-shock domain-containing protein [Streptomyces
          griseoaurantiacus M045]
 gi|329300660|gb|EGG44557.1| cold-shock domain-containing protein [Streptomyces
          griseoaurantiacus M045]
          Length = 62

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q
Sbjct: 1  MKWFNAEKGFGFIEQDGG---GADVFAHYSNIAAQGFRELLEGQKVNFDIAQ 49


>gi|302384852|ref|YP_003820674.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
 gi|302195480|gb|ADL03051.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
          Length = 67

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 3/59 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ G++KW+N  KGYGFI  +    +G++VF+H S + + G   L EGQ VTY+  + +
Sbjct: 1  MNNGTVKWFNGAKGYGFIVNDA---TGEEVFVHFSGIVADGYKTLEEGQKVTYETTEGN 56


>gi|226954178|ref|ZP_03824642.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|294650208|ref|ZP_06727582.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC
          19194]
 gi|226835087|gb|EEH67470.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|292823914|gb|EFF82743.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC
          19194]
          Length = 70

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      +SG DVF H S + S G   L EGQ VT+     D    
Sbjct: 7  GTVKWFNETKGFGFI----HADSGQDVFAHFSEIQSTGFKVLHEGQRVTFTI--TDGKKG 60

Query: 65 YSAENLKLVP 74
            A  + +VP
Sbjct: 61 PQATGITVVP 70


>gi|118589651|ref|ZP_01547056.1| Cold-shock DNA-binding domain protein [Stappia aggregata IAM
          12614]
 gi|118437737|gb|EAV44373.1| Cold-shock DNA-binding domain protein [Stappia aggregata IAM
          12614]
          Length = 66

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 7/73 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+H G++KW++  +G G I P+     G+D+ +  SA+  +G+  LTEGQLV +D     
Sbjct: 1  MLH-GNVKWFDNRRGIGTIEPQ----DGEDILVDISALRRSGIDTLTEGQLVAFDLEWR- 54

Query: 61 ANGKYSAENLKLV 73
            G+  AE+LK++
Sbjct: 55 -RGQMVAEDLKVL 66


>gi|319405275|emb|CBI78889.1| putative cold shock protein y4cH [Bartonella sp. AR 15-3]
          Length = 71

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 6/65 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G +K++N +KG+GFI P+ GST    D+F+H S V ++GL  L + Q V++D ++ 
Sbjct: 1  MAQTGEVKFFNNNKGFGFIKPDNGST----DIFVHISDVQASGLTGLNDAQKVSFD-IEP 55

Query: 60 DANGK 64
          D  GK
Sbjct: 56 DRRGK 60


>gi|295096413|emb|CBK85503.1| cold-shock DNA-binding protein family [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 73

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQ 54


>gi|270158306|ref|ZP_06186963.1| cold shock-like protein CspG [Legionella longbeachae D-4968]
 gi|289163444|ref|YP_003453582.1| DNA-binding transcriptional repressor [Legionella longbeachae
          NSW150]
 gi|269990331|gb|EEZ96585.1| cold shock-like protein CspG [Legionella longbeachae D-4968]
 gi|288856617|emb|CBJ10424.1| DNA-binding transcriptional repressor [Legionella longbeachae
          NSW150]
          Length = 69

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI      ESG DVF H   + S+G   LTEGQ V +   Q
Sbjct: 7  GIVKWFNEAKGFGFI----EQESGPDVFAHFKEIVSSGFKTLTEGQRVQFVVTQ 56


>gi|237732132|ref|ZP_04562613.1| stationary phase/starvation inducible regulatory protein CspD
          [Citrobacter sp. 30_2]
 gi|283832491|ref|ZP_06352232.1| cold shock domain protein CspD [Citrobacter youngae ATCC 29220]
 gi|226907671|gb|EEH93589.1| stationary phase/starvation inducible regulatory protein CspD
          [Citrobacter sp. 30_2]
 gi|291072151|gb|EFE10260.1| cold shock domain protein CspD [Citrobacter youngae ATCC 29220]
          Length = 74

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQ 54


>gi|134282646|ref|ZP_01769350.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
 gi|254204405|ref|ZP_04910758.1| cold-shock domain family protein [Burkholderia mallei JHU]
 gi|134246203|gb|EBA46293.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
 gi|147753991|gb|EDK61055.1| cold-shock domain family protein [Burkholderia mallei JHU]
          Length = 83

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++  G++KW+N  KG+GFITP+     GDD+F H S + S G   L E Q V+++
Sbjct: 16 LMDTGTVKWFNETKGFGFITPD---SGGDDLFAHFSEIRSEGYKTLAENQKVSFE 67


>gi|126664472|ref|ZP_01735456.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
          ELB17]
 gi|126630798|gb|EBA01412.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
          ELB17]
          Length = 68

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFIT EG    G DVF+H S++   G   L EGQ V +   Q     +
Sbjct: 6  GTVKFFNEAKGFGFITREG----GPDVFVHYSSIQGGGFKTLAEGQQVEFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 62 --AENVVAV 68


>gi|262377174|ref|ZP_06070399.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
 gi|262307912|gb|EEY89050.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
          Length = 69

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G++KW+N  KG+GFI      ESG DVF H   ++S+G   L EGQ V++  V
Sbjct: 7  GTVKWFNETKGFGFI----QQESGPDVFAHFKEISSSGFKTLFEGQRVSFSVV 55


>gi|104781331|ref|YP_607829.1| cold-shock protein CspD [Pseudomonas entomophila L48]
 gi|95110318|emb|CAK15025.1| cold-shock protein CspD [Pseudomonas entomophila L48]
          Length = 87

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  EG  E   D+F H SA+   G   L  GQ VT++ +Q
Sbjct: 4  GKVKWFNNAKGYGFINEEGKDE---DLFAHYSAIQMDGYKTLKAGQAVTFELLQ 54


>gi|16759816|ref|NP_455433.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|16764305|ref|NP_459920.1| stress response protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|29142411|ref|NP_805753.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|56414004|ref|YP_151079.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62179468|ref|YP_215885.1| CspA-like protein [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|157146440|ref|YP_001453759.1| hypothetical protein CKO_02200 [Citrobacter koseri ATCC BAA-895]
 gi|161503927|ref|YP_001571039.1| hypothetical protein SARI_02018 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161614826|ref|YP_001588791.1| hypothetical protein SPAB_02579 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|167550382|ref|ZP_02344139.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|168230817|ref|ZP_02655875.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|168236854|ref|ZP_02661912.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|168240791|ref|ZP_02665723.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|168263571|ref|ZP_02685544.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|168466527|ref|ZP_02700389.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|168819926|ref|ZP_02831926.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|194446783|ref|YP_002040144.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194451466|ref|YP_002044937.1| cold shock domain-containing protein CspD [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL476]
 gi|194470525|ref|ZP_03076509.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194734305|ref|YP_002114000.1| cold shock domain-containing protein CspD [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197248616|ref|YP_002145861.1| cold shock domain-containing protein CspD [Salmonella enterica
          subsp. enterica serovar Agona str. SL483]
 gi|197264137|ref|ZP_03164211.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197362927|ref|YP_002142564.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|198245012|ref|YP_002214871.1| cold shock domain-containing protein CspD [Salmonella enterica
          subsp. enterica serovar Dublin str. CT_02021853]
 gi|200391092|ref|ZP_03217703.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204930059|ref|ZP_03221080.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205352154|ref|YP_002225955.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|207856338|ref|YP_002242989.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|213053362|ref|ZP_03346240.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
 gi|213419933|ref|ZP_03352999.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
 gi|213428023|ref|ZP_03360773.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. E02-1180]
 gi|213581371|ref|ZP_03363197.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
 gi|213620716|ref|ZP_03373499.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
 gi|213649853|ref|ZP_03379906.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
 gi|213865355|ref|ZP_03387474.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
 gi|224582755|ref|YP_002636553.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|238913423|ref|ZP_04657260.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Tennessee str. CDC07-0191]
 gi|289805674|ref|ZP_06536303.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
 gi|289825001|ref|ZP_06544364.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-3139]
 gi|25296125|pir||AG0609 cold shock-like protein CspD [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|16419455|gb|AAL19879.1| CspA-like protein but not cold shock induced [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|16502109|emb|CAD05345.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29138041|gb|AAO69602.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|56128261|gb|AAV77767.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62127101|gb|AAX64804.1| CspA-like protein [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|157083645|gb|ABV13323.1| hypothetical protein CKO_02200 [Citrobacter koseri ATCC BAA-895]
 gi|160865274|gb|ABX21897.1| hypothetical protein SARI_02018 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|161364190|gb|ABX67958.1| hypothetical protein SPAB_02579 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194405446|gb|ACF65668.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194409770|gb|ACF69989.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194456889|gb|EDX45728.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194709807|gb|ACF89028.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|195630992|gb|EDX49578.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|197094404|emb|CAR59920.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|197212319|gb|ACH49716.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197242392|gb|EDY25012.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197290126|gb|EDY29483.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|197939528|gb|ACH76861.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|199603537|gb|EDZ02083.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204321053|gb|EDZ06254.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205271935|emb|CAR36779.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205324550|gb|EDZ12389.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205334822|gb|EDZ21586.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|205339865|gb|EDZ26629.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|205343272|gb|EDZ30036.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205347672|gb|EDZ34303.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|206708141|emb|CAR32434.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|224467282|gb|ACN45112.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|261246160|emb|CBG23964.1| cold shock-like protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267992672|gb|ACY87557.1| stress response protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|301157488|emb|CBW16978.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|312911933|dbj|BAJ35907.1| cold shock protein CspD [Salmonella enterica subsp. enterica
          serovar Typhimurium str. T000240]
 gi|320085180|emb|CBY94967.1| Cold shock-like protein cspD [Salmonella enterica subsp. enterica
          serovar Weltevreden str. 2007-60-3289-1]
 gi|321223268|gb|EFX48337.1| Cold shock protein CspD [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322616380|gb|EFY13289.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322619630|gb|EFY16505.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322622674|gb|EFY19519.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322628587|gb|EFY25374.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322631523|gb|EFY28279.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322637050|gb|EFY33753.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322641752|gb|EFY38388.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322644456|gb|EFY40996.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649574|gb|EFY46005.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322654124|gb|EFY50447.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658039|gb|EFY54306.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322663513|gb|EFY59715.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322670249|gb|EFY66389.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671485|gb|EFY67607.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322676841|gb|EFY72908.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322682766|gb|EFY78785.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322686445|gb|EFY82427.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|322713938|gb|EFZ05509.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
 gi|323129210|gb|ADX16640.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
 gi|323196101|gb|EFZ81264.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323196753|gb|EFZ81897.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323202967|gb|EFZ88001.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323209008|gb|EFZ93945.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323211913|gb|EFZ96741.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323215155|gb|EFZ99900.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323222358|gb|EGA06736.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323226879|gb|EGA11062.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323229833|gb|EGA13956.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323233058|gb|EGA17154.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323240793|gb|EGA24835.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323243110|gb|EGA27130.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323247431|gb|EGA31387.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2009159199]
 gi|323251653|gb|EGA35520.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008282]
 gi|323257359|gb|EGA41057.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008283]
 gi|323261948|gb|EGA45514.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323267963|gb|EGA51442.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008285]
 gi|323271970|gb|EGA55385.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008287]
 gi|326622624|gb|EGE28969.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Dublin str. 3246]
 gi|326627198|gb|EGE33541.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
 gi|332987837|gb|AEF06820.1| stress response protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
          Length = 73

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQ 54


>gi|253699301|ref|YP_003020490.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
 gi|251774151|gb|ACT16732.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
          Length = 66

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      ++G DVF+H S++   G  +L EG  VT+D VQ  A G 
Sbjct: 4  GVVKWFNDAKGFGFI----EQDNGVDVFVHFSSIQGDGFKSLVEGDAVTFDVVQG-AKGP 58

Query: 65 YSAENLK 71
           +A  +K
Sbjct: 59 QAANVVK 65


>gi|94500606|ref|ZP_01307136.1| Cold shock protein [Oceanobacter sp. RED65]
 gi|94427161|gb|EAT12141.1| Cold shock protein [Oceanobacter sp. RED65]
          Length = 171

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            RG +KW+N  KG+GFIT     ++G+DVF+H  ++   G  +L+EGQ V +  V  D  
Sbjct: 106 ERGLVKWFNVKKGFGFIT----RDNGEDVFVHFRSIRGTGHRSLSEGQNVKFSVV--DGQ 159

Query: 63  GKYSAENLKLV 73
               AE++ +V
Sbjct: 160 KGLQAEDVSVV 170


>gi|73667319|ref|YP_303335.1| cold-shock DNA-binding protein family protein [Ehrlichia canis
          str. Jake]
 gi|72394460|gb|AAZ68737.1| cold-shock DNA-binding protein family [Ehrlichia canis str. Jake]
          Length = 87

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 8/78 (10%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGD------DVFLHRSAVASAGLFNLTEGQLVTYDY 56
          + G +KW++ +KGYGFI  +   +  +      D+F+H +A+  + +  L EGQ V Y  
Sbjct: 11 YTGYVKWFSSEKGYGFICKDQGDKVKNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQL 70

Query: 57 VQNDANGKYSAENLKLVP 74
           +N  NGK+SA NL+++ 
Sbjct: 71 DKN--NGKFSAVNLEVLE 86


>gi|325295337|ref|YP_004281851.1| cold-shock DNA-binding domain protein [Desulfurobacterium
          thermolithotrophum DSM 11699]
 gi|325065785|gb|ADY73792.1| cold-shock DNA-binding domain protein [Desulfurobacterium
          thermolithotrophum DSM 11699]
          Length = 68

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW++  KGYGFIT +    +G DVF+H + +A  G   L EG+ V+++  +++
Sbjct: 6  GTVKWFDSKKGYGFITAD----NGQDVFVHYTGIAGTGFRTLEEGERVSFNITESN 57


>gi|320539592|ref|ZP_08039257.1| cold shock protein [Serratia symbiotica str. Tucson]
 gi|320030351|gb|EFW12365.1| cold shock protein [Serratia symbiotica str. Tucson]
          Length = 73

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N  KG+GFI PE     G+DVF H S +   G   L  GQ V++D  Q
Sbjct: 1  MEMGTVKWFNNAKGFGFICPE---SGGEDVFAHYSTIKMDGYRTLKAGQQVSFDVYQ 54


>gi|213024594|ref|ZP_03339041.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
          Length = 71

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQ 54


>gi|197301371|ref|ZP_03166452.1| hypothetical protein RUMLAC_00098 [Ruminococcus lactaris ATCC
          29176]
 gi|197299528|gb|EDY34047.1| hypothetical protein RUMLAC_00098 [Ruminococcus lactaris ATCC
          29176]
          Length = 65

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI    S   G+D+F+H S +   G  +L EGQ V +D V   A G 
Sbjct: 3  GTVKWFNNQKGYGFI----SDSEGNDIFVHYSGLVMDGFKSLEEGQAVEFD-VTEGAKGP 57

Query: 65 YSAENLKL 72
           +   +KL
Sbjct: 58 QATNVVKL 65


>gi|172041529|ref|YP_001801243.1| putative cold shock protein [Corynebacterium urealyticum DSM
          7109]
 gi|171852833|emb|CAQ05809.1| putative cold shock protein [Corynebacterium urealyticum DSM
          7109]
          Length = 67

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KGYGFI PE   +   D+F+H S + S+G   L E Q V ++
Sbjct: 3  QGTVKWFNAEKGYGFIAPE---DGSADLFVHYSEIQSSGFRTLEEDQKVEFE 51


>gi|296103113|ref|YP_003613259.1| DNA replication inhibitor [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|295057572|gb|ADF62310.1| DNA replication inhibitor [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
          Length = 73

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQ 54


>gi|237808041|ref|YP_002892481.1| cold-shock DNA-binding domain-containing protein [Tolumonas
          auensis DSM 9187]
 gi|237500302|gb|ACQ92895.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM
          9187]
          Length = 68

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KW+N  KG+GFI      + G DVF+H  A+ S G   L EGQ V +   Q   
Sbjct: 3  VRTGKVKWFNEAKGFGFI----QQDEGPDVFVHFRAINSTGFKTLAEGQRVQFTVTQGQK 58

Query: 62 NGKYSAENLKLV 73
            +  AEN+ ++
Sbjct: 59 GPQ--AENVTVL 68


>gi|253700127|ref|YP_003021316.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
 gi|251774977|gb|ACT17558.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
          Length = 68

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI      ++G+DVF+H SA+   G  +L EG+ V++D V N   G
Sbjct: 3  QGKVKWFNDAKGFGFI----EQDNGEDVFVHFSAITGDGFKSLAEGESVSFD-VTNGPKG 57

Query: 64 KYSAENLKLV 73
             A N+K +
Sbjct: 58 -LQAANVKKI 66


>gi|73539162|ref|YP_299529.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72122499|gb|AAZ64685.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 83

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G +KW+N  KG+GFI P+     GDD+F H S + S G  +L E Q V+++ V+N 
Sbjct: 16 IMQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEIRSEGFKSLQENQRVSFE-VKNG 71

Query: 61 ANGKYSA 67
            G  +A
Sbjct: 72 PKGLQAA 78


>gi|283784647|ref|YP_003364512.1| cold shock-like protein CspD [Citrobacter rodentium ICC168]
 gi|282948101|emb|CBG87666.1| cold shock-like protein CspD [Citrobacter rodentium ICC168]
          Length = 73

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQPVQFDVHQ 54


>gi|237804204|ref|ZP_04591789.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331026185|gb|EGI06241.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 41

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 4/45 (8%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          W+N +KG+GFITP+    SGDD+F+H  A+ S G  +L EGQ V+
Sbjct: 1  WFNDEKGFGFITPQ----SGDDLFVHFKAIQSDGFKSLKEGQQVS 41


>gi|193214431|ref|YP_001995630.1| cold-shock DNA-binding domain-containing protein [Chloroherpeton
          thalassium ATCC 35110]
 gi|193087908|gb|ACF13183.1| cold-shock DNA-binding domain protein [Chloroherpeton thalassium
          ATCC 35110]
          Length = 73

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 8/77 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQ 58
          M HR ++KW++  KGYGFI  PEG    G+D+F+H SA++S   +  L +G  V ++ V 
Sbjct: 1  MAHRSNVKWFDGKKGYGFIVNPEG----GEDIFVHYSAISSEKKYKMLDQGVEVEFELVT 56

Query: 59 NDANGKYSAENLKLVPK 75
           D      A+N++ + +
Sbjct: 57 TDKG--LQAQNVREISE 71


>gi|311280210|ref|YP_003942441.1| cold-shock DNA-binding domain-containing protein [Enterobacter
          cloacae SCF1]
 gi|308749405|gb|ADO49157.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1]
          Length = 73

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQPVRFDVHQ 54


>gi|53717183|ref|YP_105587.1| cold-shock domain-contain protein [Burkholderia mallei ATCC
          23344]
 gi|53722389|ref|YP_111374.1| cold shock-like protein [Burkholderia pseudomallei K96243]
 gi|67640593|ref|ZP_00439394.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
          horse 4]
 gi|76818479|ref|YP_335547.1| cold shock transcriptional regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|121596928|ref|YP_990092.1| cold-shock domain-contain protein [Burkholderia mallei SAVP1]
 gi|124383143|ref|YP_001023992.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
          10229]
 gi|126444073|ref|YP_001062939.1| hypothetical protein BURPS668_A1944 [Burkholderia pseudomallei
          668]
 gi|126447704|ref|YP_001078627.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
          10247]
 gi|126455982|ref|YP_001075887.1| cold-shock domain-contain protein [Burkholderia pseudomallei
          1106a]
 gi|166999526|ref|ZP_02265363.1| cold-shock DNA-binding domain protein [Burkholderia mallei
          PRL-20]
 gi|167723959|ref|ZP_02407195.1| cold-shock domain family protein [Burkholderia pseudomallei DM98]
 gi|167742930|ref|ZP_02415704.1| cold-shock domain family protein [Burkholderia pseudomallei 14]
 gi|167820105|ref|ZP_02451785.1| cold-shock domain family protein [Burkholderia pseudomallei 91]
 gi|167828481|ref|ZP_02459952.1| cold-shock domain family protein [Burkholderia pseudomallei 9]
 gi|167849936|ref|ZP_02475444.1| cold-shock domain family protein [Burkholderia pseudomallei
          B7210]
 gi|167898541|ref|ZP_02485942.1| cold-shock domain family protein [Burkholderia pseudomallei 7894]
 gi|167906890|ref|ZP_02494095.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC
          13177]
 gi|167915247|ref|ZP_02502338.1| cold-shock domain family protein [Burkholderia pseudomallei 112]
 gi|167923078|ref|ZP_02510169.1| cold-shock domain family protein [Burkholderia pseudomallei
          BCC215]
 gi|217425337|ref|ZP_03456831.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
 gi|226199127|ref|ZP_03794689.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|237510263|ref|ZP_04522978.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|242312121|ref|ZP_04811138.1| cold-shock domain family protein [Burkholderia pseudomallei
          1106b]
 gi|254176187|ref|ZP_04882845.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
 gi|254183753|ref|ZP_04890345.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
 gi|254186667|ref|ZP_04893183.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|254194434|ref|ZP_04900866.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
 gi|254200381|ref|ZP_04906746.1| cold-shock domain family protein [Burkholderia mallei FMH]
 gi|254263480|ref|ZP_04954345.1| cold-shock domain family protein [Burkholderia pseudomallei
          1710a]
 gi|254301649|ref|ZP_04969093.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
 gi|254356632|ref|ZP_04972907.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
 gi|52212803|emb|CAH38835.1| putative cold shock-like protein [Burkholderia pseudomallei
          K96243]
 gi|52423153|gb|AAU46723.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344]
 gi|76582952|gb|ABA52426.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|121224726|gb|ABM48257.1| cold-shock domain family protein [Burkholderia mallei SAVP1]
 gi|124291163|gb|ABN00433.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
          10229]
 gi|126223564|gb|ABN87069.1| conserved domain protein [Burkholderia pseudomallei 668]
 gi|126229750|gb|ABN93163.1| cold-shock domain family protein [Burkholderia pseudomallei
          1106a]
 gi|126240558|gb|ABO03670.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
          10247]
 gi|147747993|gb|EDK55068.1| cold-shock domain family protein [Burkholderia mallei FMH]
 gi|148025659|gb|EDK83782.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
 gi|157810787|gb|EDO87957.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
 gi|157934351|gb|EDO90021.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|160697229|gb|EDP87199.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
 gi|169651185|gb|EDS83878.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
 gi|184214286|gb|EDU11329.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
 gi|217391588|gb|EEC31616.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
 gi|225928902|gb|EEH24927.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|235002468|gb|EEP51892.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|238521343|gb|EEP84795.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
          horse 4]
 gi|242135360|gb|EES21763.1| cold-shock domain family protein [Burkholderia pseudomallei
          1106b]
 gi|243064365|gb|EES46551.1| cold-shock DNA-binding domain protein [Burkholderia mallei
          PRL-20]
 gi|254214482|gb|EET03867.1| cold-shock domain family protein [Burkholderia pseudomallei
          1710a]
          Length = 67

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+     GDD+F H S + S G   L E Q V+++
Sbjct: 4  GTVKWFNETKGFGFITPD---SGGDDLFAHFSEIRSEGYKTLAENQKVSFE 51


>gi|307610951|emb|CBX00570.1| hypothetical protein LPW_22881 [Legionella pneumophila 130b]
          Length = 69

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI  EG    G DVF H   ++S+G   LTEGQ V +   Q
Sbjct: 7  GVVKWFNELKGFGFIEQEG----GPDVFAHFKEISSSGFKTLTEGQRVQFIVTQ 56


>gi|239617864|ref|YP_002941186.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
          19.5.1]
 gi|239506695|gb|ACR80182.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
          19.5.1]
          Length = 67

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KGYGFIT     + G D+F+H SA+   G   L EGQ V ++ ++    G
Sbjct: 2  KGTVKWFSGKKGYGFIT----MDDGGDIFVHFSAIEMDGYKTLNEGQRVEFE-IEEGPKG 56

Query: 64 KYSAENLKLV 73
          +  A  ++++
Sbjct: 57 RPQAAKVRVI 66


>gi|228908166|ref|ZP_04072014.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|229017742|ref|ZP_04174631.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|229023958|ref|ZP_04180438.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|229096909|ref|ZP_04227878.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|229103017|ref|ZP_04233706.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|229115898|ref|ZP_04245295.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|229161370|ref|ZP_04289355.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|229173122|ref|ZP_04300673.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|228610455|gb|EEK67726.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|228622184|gb|EEK79025.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|228667560|gb|EEL23005.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|228680432|gb|EEL34620.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|228686519|gb|EEL40428.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|228737336|gb|EEL87851.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|228743558|gb|EEL93669.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|228851584|gb|EEM96390.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
          Length = 67

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI        G+DVF+H SA+   G  +L EGQ V+++    D
Sbjct: 1  MTLTGKVKWFNSEKGFGFI----EVADGNDVFVHFSAITGDGFKSLDEGQEVSFEV--ED 54

Query: 61 ANGKYSAENL 70
           N    A+N+
Sbjct: 55 GNRGPQAKNV 64


>gi|91783230|ref|YP_558436.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|91687184|gb|ABE30384.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
          Length = 67

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITP+     GDD+F H S +   G   L E Q V+Y+
Sbjct: 4  GTVKWFNDSKGFGFITPDA---GGDDLFAHFSEIRGDGFKTLAENQKVSYE 51


>gi|319403835|emb|CBI77421.1| putative cold shock protein y4cH [Bartonella rochalimae ATCC
          BAA-1498]
 gi|319406844|emb|CBI80479.1| putative cold shock protein y4cH [Bartonella sp. 1-1C]
          Length = 71

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 6/65 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G +K++N +KG+GFI P+ GST    D+F+H S V ++GL  L + Q V++D ++ 
Sbjct: 1  MAQTGEVKFFNNNKGFGFIKPDNGST----DIFVHISDVQASGLSGLNDAQKVSFD-IEP 55

Query: 60 DANGK 64
          D  GK
Sbjct: 56 DRRGK 60


>gi|262165515|ref|ZP_06033252.1| cold shock protein CspA [Vibrio mimicus VM223]
 gi|262402390|ref|ZP_06078951.1| cold shock protein CspA [Vibrio sp. RC586]
 gi|262025231|gb|EEY43899.1| cold shock protein CspA [Vibrio mimicus VM223]
 gi|262351172|gb|EEZ00305.1| cold shock protein CspA [Vibrio sp. RC586]
          Length = 70

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KG+GFITP+     G D+F+H  ++ S G   L EGQ V ++  Q +
Sbjct: 7  GLVKWFNETKGFGFITPD---NGGADLFVHFKSIVSDGFKTLAEGQKVAFNVEQGN 59


>gi|120402055|ref|YP_951884.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          vanbaalenii PYR-1]
 gi|119954873|gb|ABM11878.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 67

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N DKG+GFI P+G      DVF+H S ++  G  +L E Q V ++  Q +
Sbjct: 3  QGTVKWFNGDKGFGFIAPDGGA---PDVFVHYSEISGNGYRSLEENQRVEFEVEQGN 56


>gi|115474635|ref|NP_001060914.1| Os08g0129200 [Oryza sativa Japonica Group]
 gi|29467522|dbj|BAC66711.1| putative cold shock protein-1 [Oryza sativa Japonica Group]
 gi|113622883|dbj|BAF22828.1| Os08g0129200 [Oryza sativa Japonica Group]
 gi|187609563|gb|ACD13289.1| cold shock domain protein 2 [Oryza sativa Japonica Group]
 gi|215715378|dbj|BAG95129.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 197

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 38/51 (74%), Gaps = 3/51 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G++KW++  KG+GFITP+   + G+D+F+H+S++ S G  +L +G +V +
Sbjct: 7  KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEF 54


>gi|33592837|ref|NP_880481.1| cold shock-like protein [Bordetella pertussis Tohama I]
 gi|61221519|sp|P0A352|CSPA_BORPE RecName: Full=Cold shock-like protein CspA
 gi|61221520|sp|P0A353|CSPA_BORBR RecName: Full=Cold shock-like protein CspA
 gi|61221521|sp|P0A354|CSPA_BORPA RecName: Full=Cold shock-like protein CspA
 gi|4468119|emb|CAB38009.1| CspA protein; cold shock protein A [Bordetella pertussis Tohama
          I]
 gi|33572485|emb|CAE42057.1| cold shock-like protein [Bordetella pertussis Tohama I]
 gi|332382250|gb|AEE67097.1| cold shock-like protein [Bordetella pertussis CS]
          Length = 67

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KW+N +KGYGFITPE     G D+F H S + + G  +L E Q V++
Sbjct: 1  METGVVKWFNAEKGYGFITPEA---GGKDLFAHFSEIQANGFKSLEENQRVSF 50


>gi|121997901|ref|YP_001002688.1| cold-shock DNA-binding domain-containing protein [Halorhodospira
          halophila SL1]
 gi|121589306|gb|ABM61886.1| cold-shock DNA-binding protein family [Halorhodospira halophila
          SL1]
          Length = 69

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           +G++KW++  KGYGFI+ EG    G+DVF+H  A+   G  +L EGQ V +
Sbjct: 5  QQGTVKWFDNAKGYGFISREG----GEDVFVHFRAIRGDGFRSLDEGQAVEF 52


>gi|258624846|ref|ZP_05719774.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603]
 gi|258582844|gb|EEW07665.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603]
          Length = 66

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFI+ +     G DVF+H  ++ S G   L EGQ V++  V+    G 
Sbjct: 3  GSVKWFNETKGFGFISQD---NGGQDVFVHFKSIVSEGFKTLAEGQRVSFT-VEQGKKGP 58

Query: 65 YSAENLKL 72
           +A+   L
Sbjct: 59 QAAQVTAL 66


>gi|59712374|ref|YP_205150.1| DNA replication inhibitor [Vibrio fischeri ES114]
 gi|197334669|ref|YP_002156589.1| cold shock domain protein CspD [Vibrio fischeri MJ11]
 gi|59480475|gb|AAW86262.1| DNA replication inhibitor [Vibrio fischeri ES114]
 gi|197316159|gb|ACH65606.1| cold shock domain protein CspD [Vibrio fischeri MJ11]
          Length = 73

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PEG  E G D+F H S +   G   L  GQ VTY+ +     G 
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIEMEGYRTLKAGQAVTYE-IHEGPKG- 58

Query: 65 YSAENLKLV 73
          + A  +KL+
Sbjct: 59 FHASEIKLL 67


>gi|16760938|ref|NP_456555.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. CT18]
 gi|29141370|ref|NP_804712.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
 gi|213053459|ref|ZP_03346337.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E00-7866]
 gi|213421410|ref|ZP_03354476.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E01-6750]
 gi|213424976|ref|ZP_03357726.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E02-1180]
 gi|213580718|ref|ZP_03362544.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-0664]
 gi|213864720|ref|ZP_03386839.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. M223]
 gi|289811876|ref|ZP_06542505.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
 gi|289829487|ref|ZP_06547099.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-3139]
 gi|20137745|sp|P58726|CSPJ_SALTI RecName: Full=Cold shock-like protein CspJ
 gi|25296117|pir||AD0755 cold shock protein [imported] - Salmonella enterica subsp.
          enterica serovar Typhi (strain CT18)
 gi|16503235|emb|CAD05743.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi]
 gi|29136997|gb|AAO68561.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
          Length = 70

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+NP+KG+GFITP+   +   DVF+H SA+ S     L E Q V +   Q
Sbjct: 7  GLVKWFNPEKGFGFITPK---DGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQ 57


>gi|289705593|ref|ZP_06501984.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58]
 gi|289557674|gb|EFD50974.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58]
          Length = 67

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI PE   ++  DVF+H SA+  +G   L E   V ++  Q+   G 
Sbjct: 4  GTVKWFNAEKGYGFIAPE---DNSADVFVHFSAIQGSGFKELQENDRVEFE-TQDGPKGL 59

Query: 65 YSAENLKL 72
           +A   KL
Sbjct: 60 QAANVTKL 67


>gi|257056878|ref|YP_003134710.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
 gi|256586750|gb|ACU97883.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
          Length = 67

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G++KW+N +KG+GFI P+G    G DVF+H S +   G  +L +GQ V +   Q 
Sbjct: 4  GTVKWFNSEKGFGFIAPDG---GGADVFVHYSEIDGRGFRSLEDGQRVVFTVGQG 55


>gi|288574158|ref|ZP_06392515.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288569899|gb|EFC91456.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 66

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 15/75 (20%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFIT     E G D F+H SA+   G   L EGQ VT          
Sbjct: 3  QGTVKWFNGTKGYGFITG----EDGKDYFVHFSAINIDGFKTLDEGQAVT---------- 48

Query: 64 KYSAENLKLVPKSSN 78
           ++ EN +  P++SN
Sbjct: 49 -FTIENGQKGPQASN 62


>gi|145294296|ref|YP_001137117.1| hypothetical protein cgR_0252 [Corynebacterium glutamicum R]
 gi|140844216|dbj|BAF53215.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 67

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI P    +   D+F+H S +  +G  NL E QLV ++
Sbjct: 3  QGTVKWFNGEKGFGFIAP---NDGSADLFVHYSEIQGSGFRNLEENQLVEFE 51


>gi|153821098|ref|ZP_01973765.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae B33]
 gi|153824664|ref|ZP_01977331.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2]
 gi|262190586|ref|ZP_06048826.1| cold shock protein CspA [Vibrio cholerae CT 5369-93]
 gi|126521472|gb|EAZ78695.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae B33]
 gi|149741620|gb|EDM55649.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2]
 gi|262033546|gb|EEY52044.1| cold shock protein CspA [Vibrio cholerae CT 5369-93]
 gi|327485910|gb|AEA80316.1| Cold shock protein CspA [Vibrio cholerae LMA3894-4]
          Length = 66

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          GS+KW+N  KG+GF+T +     G+DVF+H +++ S G   L EGQ V++
Sbjct: 3  GSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLAEGQRVSF 49


>gi|261211013|ref|ZP_05925303.1| cold shock protein CspA [Vibrio sp. RC341]
 gi|260839988|gb|EEX66588.1| cold shock protein CspA [Vibrio sp. RC341]
          Length = 70

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KG+GFITP+     G D+F+H  ++ S G   L EGQ V ++  Q +
Sbjct: 7  GLVKWFNETKGFGFITPD---NGGADLFVHFKSIVSDGFKTLAEGQKVAFNVEQGN 59


>gi|238756793|ref|ZP_04618027.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
 gi|238704988|gb|EEP97471.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
          Length = 75

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFITP   T+   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 12 GLVKWFDAGKGFGFITP---TDGSKDVFVHFSAIQSNDFKTLDEGQSVEFS-IENGAKGP 67

Query: 65 YSA 67
           +A
Sbjct: 68 SAA 70


>gi|254502619|ref|ZP_05114770.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222438690|gb|EEE45369.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 307

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 7/71 (9%)

Query: 5   GSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K++  DKG+GFITP+ G T    DVF+H SAV  +GL +L  GQ ++++  + D  G
Sbjct: 217 GVVKFFKSDKGFGFITPDDGET----DVFVHISAVERSGLASLDSGQRISFE-TEPDRRG 271

Query: 64  K-YSAENLKLV 73
           K   A NL+++
Sbjct: 272 KGPKAVNLQML 282


>gi|260438024|ref|ZP_05791840.1| cold shock protein [Butyrivibrio crossotus DSM 2876]
 gi|292809503|gb|EFF68708.1| cold shock protein [Butyrivibrio crossotus DSM 2876]
          Length = 66

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KG+GFI    S E+G D+F+H S +   G   L EGQ V ++ V + A
Sbjct: 1  MNKGTVKWFNDQKGFGFI----SDENGKDIFVHFSGIVMDGHKKLEEGQKVEFE-VADGA 55

Query: 62 NGKYSAENLKLV 73
           G   A N+K++
Sbjct: 56 KGP-QAVNVKVI 66


>gi|254470060|ref|ZP_05083464.1| cold-shock DNA-binding domain protein [Pseudovibrio sp. JE062]
 gi|211960371|gb|EEA95567.1| cold-shock DNA-binding domain protein [Pseudovibrio sp. JE062]
          Length = 215

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++  DKG+GFITP+   E  +DVF+H SAV  +GL  L  GQ ++++  + D  GK
Sbjct: 124 GTVKFFKLDKGFGFITPD---EGENDVFVHISAVERSGLTTLDSGQRISFE-TEPDRRGK 179


>gi|148273662|ref|YP_001223223.1| putative cold shock protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|170783059|ref|YP_001711393.1| putative cold shock protein [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|147831592|emb|CAN02560.1| putative cold shock protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|169157629|emb|CAQ02827.1| putative cold shock protein [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 72

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG---DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          G++KW+N +KG+GFIT + + E G    DVF+H SA+  +G   L EGQ V ++  Q   
Sbjct: 4  GTVKWFNGEKGFGFITVD-AVEGGPAQQDVFVHYSAIEMSGYKVLEEGQRVAFEIGQGSK 62

Query: 62 NGKYSAENLKL 72
               AEN+ L
Sbjct: 63 G--LQAENVTL 71


>gi|187928399|ref|YP_001898886.1| cold-shock DNA-binding domain-containing protein [Ralstonia
          pickettii 12J]
 gi|241662975|ref|YP_002981335.1| cold-shock DNA-binding domain-containing protein [Ralstonia
          pickettii 12D]
 gi|309782106|ref|ZP_07676836.1| cold-shock DNA-binding domain protein [Ralstonia sp. 5_7_47FAA]
 gi|187725289|gb|ACD26454.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
 gi|240865002|gb|ACS62663.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
 gi|308919172|gb|EFP64839.1| cold-shock DNA-binding domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 67

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G++KW+N  KG+GFITP+     G+D+F H S V   G  +L EGQ V Y
Sbjct: 1  METGTVKWFNDSKGFGFITPD---AGGNDLFAHFSEVQGNGFKSLQEGQKVRY 50


>gi|303240450|ref|ZP_07326967.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
          CD2]
 gi|302592015|gb|EFL61746.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
          CD2]
          Length = 66

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E G+DVF+H SA+ + G   L EGQ V ++      NG+
Sbjct: 4  GTVKWFNAGKGFGFI----EREDGEDVFVHFSAINADGYKTLNEGQKVQFEV----ENGQ 55

Query: 65 YSAENLKLVP 74
             +   ++P
Sbjct: 56 RGLQAKNVIP 65


>gi|163857107|ref|YP_001631405.1| cold shock-like protein [Bordetella petrii DSM 12804]
 gi|163260835|emb|CAP43137.1| cold shock-like protein [Bordetella petrii]
          Length = 67

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KW+N +KGYGFITPE     G D+F H S + + G  +L E Q V++
Sbjct: 1  METGVVKWFNSEKGYGFITPEA---GGKDLFAHFSEIQANGFKSLEENQRVSF 50


>gi|317496049|ref|ZP_07954409.1| cold-shock' DNA-binding domain-containing protein [Gemella
          moribillum M424]
 gi|316913624|gb|EFV35110.1| cold-shock' DNA-binding domain-containing protein [Gemella
          moribillum M424]
          Length = 66

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG      DVF+H S++   G   L EG  V ++ V++ A
Sbjct: 1  MKQGTVKWFNEEKGFGFIAVEGEK----DVFVHFSSIQKDGFKTLKEGDKVEFE-VEDGA 55

Query: 62 NGKYSA 67
           G  +A
Sbjct: 56 RGPQAA 61


>gi|322433205|ref|YP_004210426.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321165597|gb|ADW71299.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 69

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +++G++KW+N  KGYGF+  EG      DVF+H S +   G  +L EG  VT+D +Q +
Sbjct: 1  MYKGTVKWFNNAKGYGFLGREGDP----DVFVHYSPIQIDGYKSLEEGDAVTFDIIQGE 55


>gi|256397223|ref|YP_003118787.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256363449|gb|ACU76946.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 67

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFI  +G    G DVF+H SA+   G  +L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGYGFIAVDG----GSDVFVHYSAIQMDGYRSLEENQRVEFEISQ 53


>gi|212712025|ref|ZP_03320153.1| hypothetical protein PROVALCAL_03101 [Providencia alcalifaciens
          DSM 30120]
 gi|212685547|gb|EEB45075.1| hypothetical protein PROVALCAL_03101 [Providencia alcalifaciens
          DSM 30120]
          Length = 66

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N  KG+GFI+P    +   DVF+H SA+ S     L EGQ V++  V+N A G
Sbjct: 3  GLVKWFNESKGFGFISP---ADGSKDVFVHFSAIQSDSFKTLNEGQKVSFS-VENGAKG 57


>gi|51244787|ref|YP_064671.1| cold-shock protein (CspD) [Desulfotalea psychrophila LSv54]
 gi|50875824|emb|CAG35664.1| probable cold-shock protein (CspD) [Desulfotalea psychrophila
          LSv54]
          Length = 66

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           G +KW+N  KG+GFI  EG    GDD+F+H +++ ++G   L EG  V++D
Sbjct: 3  EGIVKWFNDAKGFGFIDQEG----GDDLFVHHTSINASGFKTLEEGARVSFD 50


>gi|88706396|ref|ZP_01104101.1| Cold shock protein [Congregibacter litoralis KT71]
 gi|88699332|gb|EAQ96446.1| Cold shock protein [Congregibacter litoralis KT71]
          Length = 68

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  EG    G DVF+H SA+   G   LT+GQ V  ++   D    
Sbjct: 6  GTVKWFNESKGFGFIEREG----GPDVFVHFSAIKGDGFKTLTDGQKV--EFTVTDGQKG 59

Query: 65 YSAENLKLV 73
            AE++  V
Sbjct: 60 PQAEDVVAV 68


>gi|229016428|ref|ZP_04173370.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|229022656|ref|ZP_04179181.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|228738665|gb|EEL89136.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|228744836|gb|EEL94896.1| Cold shock protein cspB [Bacillus cereus AH1273]
          Length = 67

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++
Sbjct: 1  MTVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFE 51


>gi|225459483|ref|XP_002285837.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 228

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KG+GFI P+   + G+D+F+H++++ S G   L+EG+ V +  V +  +G+
Sbjct: 9  GTVKWFSGQKGFGFIAPD---DGGEDLFVHQTSIRSDGFRTLSEGETVEF-AVDHGEDGR 64

Query: 65 YSAENLKLV 73
            A  +  V
Sbjct: 65 TKAVEVTAV 73


>gi|108803141|ref|YP_643078.1| cold-shock DNA-binding protein family protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108764384|gb|ABG03266.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 67

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW++ +KGYGFI+P+  +E   D+F+H + +A  G   L EG  V+Y+
Sbjct: 1  MAQGTVKWFSDEKGYGFISPDDGSE---DLFVHYTGIAGEGFKTLEEGARVSYE 51


>gi|320139464|gb|EFW31338.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
          subsp. aureus MRSA131]
          Length = 66

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          ++ G++KW+N +KG+GFI      E+G+DVF+H S +   G  +L +GQ V +D V
Sbjct: 1  MNNGTVKWFNSEKGFGFI----ERENGNDVFVHFSNIVGEGYKSLEDGQSVDFDIV 52


>gi|330720265|gb|EGG98627.1| Cold shock protein [gamma proteobacterium IMCC2047]
          Length = 145

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
            +G++KW+N  KG+GFIT     +SG+DVF+H  +V   G   L EGQ V +  V+ +
Sbjct: 80  EQGTVKWFNVTKGFGFIT----RDSGEDVFVHYRSVRGNGRRTLREGQRVLFKVVEGE 133


>gi|331700130|ref|YP_004336369.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326954819|gb|AEA28516.1| cold-shock DNA-binding domain protein [Pseudonocardia
          dioxanivorans CB1190]
          Length = 67

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KG+GFI  +G    G DVF+H S + ++G  +L EGQ V ++  Q 
Sbjct: 3  QGTVKWFNGEKGFGFIQQDG---GGADVFVHYSEIDASGFRSLDEGQRVEFEVGQG 55


>gi|325263738|ref|ZP_08130471.1| conserved domain protein [Clostridium sp. D5]
 gi|324030776|gb|EGB92058.1| conserved domain protein [Clostridium sp. D5]
          Length = 65

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI    S   G+DVF+H S +   G  +L EGQ V +D V + A G 
Sbjct: 3  GTVKWFNNQKGYGFI----SDSEGNDVFVHYSGLMMDGFKSLEEGQAVEFD-VTDGAKGP 57

Query: 65 YSAENLKL 72
           +    KL
Sbjct: 58 QAVNVTKL 65


>gi|308274214|emb|CBX30813.1| Major cold shock protein [uncultured Desulfobacterium sp.]
          Length = 66

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      E+G DVF+H SA+ + G  +L EG  V+++  Q
Sbjct: 4  GTVKWFNDKKGFGFI----EQENGPDVFVHHSAINATGFKSLREGDKVSFEIEQ 53


>gi|27366046|ref|NP_761574.1| Cold shock protein [Vibrio vulnificus CMCP6]
 gi|37679688|ref|NP_934297.1| cold shock protein [Vibrio vulnificus YJ016]
 gi|320156560|ref|YP_004188939.1| cold shock protein CspA [Vibrio vulnificus MO6-24/O]
 gi|27362246|gb|AAO11101.1| Cold shock protein [Vibrio vulnificus CMCP6]
 gi|37198433|dbj|BAC94268.1| cold shock protein [Vibrio vulnificus YJ016]
 gi|319931872|gb|ADV86736.1| cold shock protein CspA [Vibrio vulnificus MO6-24/O]
          Length = 70

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI+ +     G DVF+H  A+ S G   L EGQ V+++
Sbjct: 7  GTVKWFNETKGFGFISQD---NGGKDVFVHFRAIVSEGFKTLAEGQKVSFN 54


>gi|226330749|ref|ZP_03806267.1| hypothetical protein PROPEN_04669 [Proteus penneri ATCC 35198]
 gi|225201544|gb|EEG83898.1| hypothetical protein PROPEN_04669 [Proteus penneri ATCC 35198]
          Length = 69

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITPE   + G+D+F H S +   G   L  GQ V Y  ++
Sbjct: 4  GTVKWFNNAKGFGFITPE---KGGEDIFAHYSTIRMEGYRTLKAGQKVNYSTIK 54


>gi|221134864|ref|ZP_03561167.1| cold-shock DNA-binding domain-containing protein [Glaciecola sp.
          HTCC2999]
          Length = 74

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI PE   E   D+F H S +   G   L  GQ V YD VQ
Sbjct: 4  GKVKWFNNTKGFGFIVPEDGNE---DIFAHYSTIKMDGYRALKAGQSVHYDMVQ 54


>gi|237732149|ref|ZP_04562630.1| cspB [Citrobacter sp. 30_2]
 gi|226907688|gb|EEH93606.1| cspB [Citrobacter sp. 30_2]
          Length = 97

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+NP+KG+GFITP    +   DVF+H SA+ S     L E Q V +   Q
Sbjct: 34 GLVKWFNPEKGFGFITP---ADGSKDVFVHFSAIQSNEFKTLNENQKVEFGVEQ 84


>gi|188575644|ref|YP_001912573.1| hypothetical protein PXO_04812 [Xanthomonas oryzae pv. oryzae
          PXO99A]
 gi|188520096|gb|ACD58041.1| conserved domain protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 61

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +KW+N  KG+GFI    S E+G+DVF+H  A+   G  +L EGQ V++  VQ
Sbjct: 1  MKWFNDAKGFGFI----SRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQ 48


>gi|331007546|ref|ZP_08330704.1| Cold shock protein CspC [gamma proteobacterium IMCC1989]
 gi|330418644|gb|EGG93152.1| Cold shock protein CspC [gamma proteobacterium IMCC1989]
          Length = 78

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  +GYGFI+ E  +E   D+F+H   + S G  +L EGQ V +   + D
Sbjct: 15 GTVKWFNNSRGYGFISCEAKSE---DIFVHYRNIQSEGYRSLNEGQSVEFSLAEGD 67


>gi|147812546|emb|CAN68380.1| hypothetical protein VITISV_018906 [Vitis vinifera]
          Length = 189

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KG+GFI P+   + G+D+F+H++++ S G   L+EG+ V +  V +  +G+
Sbjct: 9  GTVKWFSGQKGFGFIAPD---DGGEDLFVHQTSIRSDGFRTLSEGETVEF-AVDHGEDGR 64

Query: 65 YSAENLKLVPKS 76
            A  +  V  S
Sbjct: 65 TKAVEVTAVRGS 76


>gi|260772638|ref|ZP_05881554.1| cold shock protein CspD [Vibrio metschnikovii CIP 69.14]
 gi|260611777|gb|EEX36980.1| cold shock protein CspD [Vibrio metschnikovii CIP 69.14]
          Length = 73

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PEG  E   D+F H S +   G   L  GQ V Y+  Q      
Sbjct: 4  GTVKWFNNAKGFGFICPEGGNE---DIFAHYSTIKMDGYRTLKAGQQVAYEVEQGPKG-- 58

Query: 65 YSAENL 70
          Y A N+
Sbjct: 59 YHASNV 64


>gi|261856912|ref|YP_003264195.1| cold-shock DNA-binding domain protein [Halothiobacillus
           neapolitanus c2]
 gi|261837381|gb|ACX97148.1| cold-shock DNA-binding domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 143

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G +KW+N DKG+GFI      E+G+D+F+H  AV       L EGQ V Y
Sbjct: 80  GHVKWFNTDKGFGFIV----RENGEDLFVHFRAVGDGSTLQLVEGQKVEY 125


>gi|189426058|ref|YP_001953235.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
 gi|189422317|gb|ACD96715.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
          Length = 66

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+      E+G+DVF H SA+   G  +L EG  VT++  +
Sbjct: 4  GTVKWFNDSKGFGFL----EQENGEDVFCHFSAITGEGFKSLAEGDRVTFEVTK 53


>gi|42780307|ref|NP_977554.1| cold shock protein CspA [Bacillus cereus ATCC 10987]
 gi|228906859|ref|ZP_04070728.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|228957503|ref|ZP_04119255.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228984303|ref|ZP_04144484.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229042975|ref|ZP_04190706.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|229084220|ref|ZP_04216504.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
 gi|229095719|ref|ZP_04226698.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|229101818|ref|ZP_04232533.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|229114669|ref|ZP_04244083.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|229143839|ref|ZP_04272258.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|229149436|ref|ZP_04277672.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|229160184|ref|ZP_04288183.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|229195434|ref|ZP_04322202.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|296501833|ref|YP_003663533.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|42736226|gb|AAS40162.1| cold shock protein CspA [Bacillus cereus ATCC 10987]
 gi|209972092|gb|ACJ03557.1| cold shock protein [Bacillus cereus]
 gi|209972100|gb|ACJ03561.1| cold shock protein [Bacillus thuringiensis serovar tohokuensis]
 gi|228587974|gb|EEK46024.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|228623145|gb|EEK79972.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|228634078|gb|EEK90671.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|228639600|gb|EEK96011.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|228668734|gb|EEL24162.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|228681611|gb|EEL35773.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|228687552|gb|EEL41451.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|228699098|gb|EEL51799.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
 gi|228726315|gb|EEL77541.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|228775420|gb|EEM23805.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228802095|gb|EEM48960.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228852863|gb|EEM97648.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|296322885|gb|ADH05813.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|324325246|gb|ADY20506.1| cold shock protein CspA [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 67

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++
Sbjct: 1  MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFE 51


>gi|307243261|ref|ZP_07525432.1| major cold shock protein CspA [Peptostreptococcus stomatis DSM
          17678]
 gi|306493389|gb|EFM65371.1| major cold shock protein CspA [Peptostreptococcus stomatis DSM
          17678]
          Length = 66

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N +KG+GFI+ EG     +D+F+H SA+   G  +L EGQ V ++ V  +
Sbjct: 4  GTVKWFNNEKGFGFISVEGE----NDMFVHFSAIQGDGYKSLEEGQKVEFEVVDGE 55


>gi|284990776|ref|YP_003409330.1| cold-shock DNA-binding domain-containing protein
          [Geodermatophilus obscurus DSM 43160]
 gi|284064021|gb|ADB74959.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
          DSM 43160]
          Length = 310

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P+   + G DVF+H SA+A  G F  L EGQ V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIEPD---DGGQDVFVHFSAIADEGGFRTLDEGQQVEFEASQ 55



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 4/52 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55
           G++KW+N +KG+GFI  +   + G DVF+H SA++  G + +L EGQ V ++
Sbjct: 246 GTVKWFNAEKGFGFIEAD---DGGPDVFVHFSAISDRGGYRSLDEGQRVEFE 294



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQ 58
           + W++ DKG+GFI P+   E G DVF+H S +A S G  +L EGQ V +   Q
Sbjct: 122 VTWFDNDKGFGFIQPD---EDGPDVFVHFSQIADSGGYRSLDEGQRVEFAVTQ 171


>gi|322421190|ref|YP_004200413.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
          M18]
 gi|320127577|gb|ADW15137.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
          Length = 66

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      E+G DVF+H S++   G  +L EG  VT++ VQ  A G 
Sbjct: 4  GVVKWFNDAKGFGFI----EQENGGDVFVHFSSIQGDGFKSLAEGDSVTFEVVQG-AKGP 58

Query: 65 YSAENLK 71
           +A  +K
Sbjct: 59 QAANVVK 65


>gi|330504261|ref|YP_004381130.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina NK-01]
 gi|328918547|gb|AEB59378.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina NK-01]
          Length = 69

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI      ESG DVF+H  A+   G   L EGQ V +   Q
Sbjct: 7  GTVKWFNDSKGYGFI----QRESGPDVFVHYRAIRGEGHRTLVEGQKVEFGVTQ 56


>gi|312795412|ref|YP_004028334.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
 gi|312167187|emb|CBW74190.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
          Length = 67

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFIT +     G+D+F H S + + G  +L E Q V+++ V+N  
Sbjct: 1  METGIVKWFNDAKGYGFITAD---SGGEDLFAHFSEIRAEGFKSLKESQRVSFE-VKNGX 56

Query: 62 NGKYSA 67
           GK +A
Sbjct: 57 KGKQAA 62


>gi|285017922|ref|YP_003375633.1| cold shock protein [Xanthomonas albilineans GPE PC73]
 gi|283473140|emb|CBA15646.1| probable cold shock protein [Xanthomonas albilineans]
          Length = 73

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI    S  +G+DVF+H  A+ + G  +L EGQ V++  VQ
Sbjct: 11 GLVKWFNDAKGFGFI----SRTNGEDVFVHFRAIQTQGFKSLKEGQKVSFIVVQ 60


>gi|237747860|ref|ZP_04578340.1| cold-shock DNA-binding protein family protein [Oxalobacter
          formigenes OXCC13]
 gi|229379222|gb|EEO29313.1| cold-shock DNA-binding protein family protein [Oxalobacter
          formigenes OXCC13]
          Length = 78

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N  KG+GFITP+    +G D+F H S + + G  +L EGQ V ++
Sbjct: 12 METGTVKWFNNSKGFGFITPD---NNGADLFAHFSEIQAGGFKSLEEGQKVKFE 62


>gi|163749217|ref|ZP_02156467.1| putative Cold shock-like protein [Shewanella benthica KT99]
 gi|161331287|gb|EDQ02176.1| putative Cold shock-like protein [Shewanella benthica KT99]
          Length = 70

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +     G DVF+H  ++ S G   L EGQ V+++  Q
Sbjct: 7  GLVKWFNEEKGFGFITQD---NGGADVFVHFRSITSDGFKTLAEGQKVSFEVEQ 57


>gi|94269264|ref|ZP_01291414.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
 gi|93451280|gb|EAT02166.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
          Length = 66

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           G++KW+N  KGYGFI    + +SG DVF+H +A+   G  +L EG  V ++ V
Sbjct: 3  EGTVKWFNDAKGYGFI----AQDSGSDVFVHHTAIEGQGFKSLQEGARVEFEIV 52


>gi|15600954|ref|NP_232584.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          O1 biovar eltor str. N16961]
 gi|121586738|ref|ZP_01676521.1| cold shock DNA-binding domain protein [Vibrio cholerae 2740-80]
 gi|121728217|ref|ZP_01681251.1| cold shock DNA-binding domain protein [Vibrio cholerae V52]
 gi|147671812|ref|YP_001215928.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          O395]
 gi|153214423|ref|ZP_01949394.1| cold shock DNA-binding domain protein [Vibrio cholerae 1587]
 gi|153802359|ref|ZP_01956945.1| cold shock DNA-binding domain protein [Vibrio cholerae MZO-3]
 gi|153816780|ref|ZP_01969447.1| cold shock DNA-binding domain protein [Vibrio cholerae NCTC 8457]
 gi|153825010|ref|ZP_01977677.1| conserved domain protein [Vibrio cholerae MZO-2]
 gi|153830508|ref|ZP_01983175.1| cold shock DNA-binding domain protein [Vibrio cholerae 623-39]
 gi|227811808|ref|YP_002811818.1| cold shock DNA-binding domain protein [Vibrio cholerae M66-2]
 gi|229506650|ref|ZP_04396159.1| cold shock protein CspE [Vibrio cholerae BX 330286]
 gi|229510552|ref|ZP_04400032.1| cold shock protein CspE [Vibrio cholerae B33]
 gi|229514684|ref|ZP_04404145.1| cold shock protein CspE [Vibrio cholerae TMA 21]
 gi|229517316|ref|ZP_04406761.1| cold shock protein CspE [Vibrio cholerae RC9]
 gi|229522853|ref|ZP_04412267.1| cold shock protein CspE [Vibrio cholerae TM 11079-80]
 gi|229526190|ref|ZP_04415594.1| cold shock protein CspE [Vibrio cholerae bv. albensis VL426]
 gi|229527836|ref|ZP_04417227.1| cold shock protein CspE [Vibrio cholerae 12129(1)]
 gi|229605127|ref|YP_002875831.1| cold shock protein CspE [Vibrio cholerae MJ-1236]
 gi|254225227|ref|ZP_04918840.1| cold shock DNA-binding domain protein [Vibrio cholerae V51]
 gi|254286678|ref|ZP_04961633.1| cold shock DNA-binding domain protein [Vibrio cholerae AM-19226]
 gi|254850617|ref|ZP_05239967.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          MO10]
 gi|255746005|ref|ZP_05419952.1| cold shock protein CspE [Vibrio cholera CIRS 101]
 gi|258620062|ref|ZP_05715101.1| cold shock DNA-binding domain protein [Vibrio mimicus VM573]
 gi|258624862|ref|ZP_05719790.1| cold shock DNA-binding domain protein [Vibrio mimicus VM603]
 gi|261212646|ref|ZP_05926930.1| cold shock protein CspE [Vibrio sp. RC341]
 gi|262162157|ref|ZP_06031172.1| cold shock protein CspE [Vibrio cholerae INDRE 91/1]
 gi|262164800|ref|ZP_06032538.1| cold shock protein CspE [Vibrio mimicus VM223]
 gi|262167820|ref|ZP_06035521.1| cold shock protein CspE [Vibrio cholerae RC27]
 gi|262172987|ref|ZP_06040664.1| cold shock protein CspE [Vibrio mimicus MB-451]
 gi|262403363|ref|ZP_06079923.1| cold shock protein CspE [Vibrio sp. RC586]
 gi|297579689|ref|ZP_06941616.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          RC385]
 gi|298500039|ref|ZP_07009845.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          MAK 757]
 gi|9657576|gb|AAF96097.1| cold shock DNA-binding domain protein [Vibrio cholerae O1 biovar
          El Tor str. N16961]
 gi|121549035|gb|EAX59072.1| cold shock DNA-binding domain protein [Vibrio cholerae 2740-80]
 gi|121629540|gb|EAX61964.1| cold shock DNA-binding domain protein [Vibrio cholerae V52]
 gi|124115372|gb|EAY34192.1| cold shock DNA-binding domain protein [Vibrio cholerae 1587]
 gi|124122078|gb|EAY40821.1| cold shock DNA-binding domain protein [Vibrio cholerae MZO-3]
 gi|125622326|gb|EAZ50647.1| cold shock DNA-binding domain protein [Vibrio cholerae V51]
 gi|126512583|gb|EAZ75177.1| cold shock DNA-binding domain protein [Vibrio cholerae NCTC 8457]
 gi|146314195|gb|ABQ18735.1| cold shock DNA-binding domain protein [Vibrio cholerae O395]
 gi|148874003|gb|EDL72138.1| cold shock DNA-binding domain protein [Vibrio cholerae 623-39]
 gi|149741335|gb|EDM55369.1| conserved domain protein [Vibrio cholerae MZO-2]
 gi|150423262|gb|EDN15208.1| cold shock DNA-binding domain protein [Vibrio cholerae AM-19226]
 gi|227010950|gb|ACP07161.1| cold shock DNA-binding domain protein [Vibrio cholerae M66-2]
 gi|227014809|gb|ACP11018.1| cold shock DNA-binding domain protein [Vibrio cholerae O395]
 gi|229334198|gb|EEN99683.1| cold shock protein CspE [Vibrio cholerae 12129(1)]
 gi|229336348|gb|EEO01366.1| cold shock protein CspE [Vibrio cholerae bv. albensis VL426]
 gi|229340070|gb|EEO05078.1| cold shock protein CspE [Vibrio cholerae TM 11079-80]
 gi|229345352|gb|EEO10325.1| cold shock protein CspE [Vibrio cholerae RC9]
 gi|229348664|gb|EEO13622.1| cold shock protein CspE [Vibrio cholerae TMA 21]
 gi|229352997|gb|EEO17937.1| cold shock protein CspE [Vibrio cholerae B33]
 gi|229357001|gb|EEO21919.1| cold shock protein CspE [Vibrio cholerae BX 330286]
 gi|229371613|gb|ACQ62035.1| cold shock protein CspE [Vibrio cholerae MJ-1236]
 gi|254846322|gb|EET24736.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          MO10]
 gi|255735759|gb|EET91157.1| cold shock protein CspE [Vibrio cholera CIRS 101]
 gi|258582860|gb|EEW07681.1| cold shock DNA-binding domain protein [Vibrio mimicus VM603]
 gi|258587420|gb|EEW12130.1| cold shock DNA-binding domain protein [Vibrio mimicus VM573]
 gi|260837711|gb|EEX64388.1| cold shock protein CspE [Vibrio sp. RC341]
 gi|261890345|gb|EEY36332.1| cold shock protein CspE [Vibrio mimicus MB-451]
 gi|262023728|gb|EEY42428.1| cold shock protein CspE [Vibrio cholerae RC27]
 gi|262027180|gb|EEY45847.1| cold shock protein CspE [Vibrio mimicus VM223]
 gi|262028232|gb|EEY46890.1| cold shock protein CspE [Vibrio cholerae INDRE 91/1]
 gi|262350862|gb|EEY99995.1| cold shock protein CspE [Vibrio sp. RC586]
 gi|297535335|gb|EFH74169.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          RC385]
 gi|297542020|gb|EFH78071.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          MAK 757]
 gi|327485405|gb|AEA79811.1| Cold shock protein CspE [Vibrio cholerae LMA3894-4]
          Length = 69

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V +   Q     +
Sbjct: 7  GTVKWFNETKGFGFI----KQENGPDVFAHFSAIQGDGFRTLAEGQKVEFVITQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AE++K++
Sbjct: 63 --AESIKVL 69


>gi|28900407|ref|NP_800062.1| cold shock DNA-binding domain-containing protein [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|91227011|ref|ZP_01261548.1| cold shock DNA-binding domain protein [Vibrio alginolyticus
          12G01]
 gi|153837377|ref|ZP_01990044.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus
          AQ3810]
 gi|254228898|ref|ZP_04922320.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25]
 gi|260362063|ref|ZP_05775059.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          K5030]
 gi|260877358|ref|ZP_05889713.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AN-5034]
 gi|260898395|ref|ZP_05906891.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          Peru-466]
 gi|260902872|ref|ZP_05911267.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AQ4037]
 gi|262396755|ref|YP_003288608.1| cold shock protein CspE [Vibrio sp. Ex25]
 gi|269968331|ref|ZP_06182351.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 40B]
 gi|28808718|dbj|BAC61895.1| cold shock DNA-binding domain protein [Vibrio parahaemolyticus
          RIMD 2210633]
 gi|91188813|gb|EAS75099.1| cold shock DNA-binding domain protein [Vibrio alginolyticus
          12G01]
 gi|149749292|gb|EDM60071.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus
          AQ3810]
 gi|151938575|gb|EDN57411.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25]
 gi|262340349|gb|ACY54143.1| cold shock protein CspE [Vibrio sp. Ex25]
 gi|269827049|gb|EEZ81363.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 40B]
 gi|308085077|gb|EFO34772.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          Peru-466]
 gi|308090568|gb|EFO40263.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AN-5034]
 gi|308107799|gb|EFO45339.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AQ4037]
 gi|308113783|gb|EFO51323.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          K5030]
 gi|328470361|gb|EGF41272.1| cold shock protein CspE [Vibrio parahaemolyticus 10329]
          Length = 69

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V  ++V +     
Sbjct: 7  GTVKWFNETKGFGFI----QQENGPDVFAHFSAITGDGFRTLVEGQKV--EFVISQGQKG 60

Query: 65 YSAENLKLV 73
            AE +K++
Sbjct: 61 PQAEQIKVL 69


>gi|330447711|ref|ZP_08311359.1| cold shock protein CspG [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328491902|dbj|GAA05856.1| cold shock protein CspG [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 70

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KG+GFIT +       DVF+H  A+ S G   L +GQ V++D  Q
Sbjct: 7  GLVKWFNEEKGFGFITQDNGAA---DVFVHFQAIVSDGFKTLMDGQKVSFDVEQ 57


>gi|117619345|ref|YP_858396.1| hypothetical protein AHA_3962 [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|117560752|gb|ABK37700.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
          Length = 70

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++K++N +KG+GFI+P   T+   DVF+H SA+ + G   L EGQ V +   Q
Sbjct: 7  GTVKFFNAEKGFGFISP---TDGSKDVFVHFSAIQTPGFKTLDEGQRVEFTIEQ 57


>gi|291285774|ref|YP_003502592.1| Cold shock-like protein cspB [Escherichia coli O55:H7 str.
          CB9615]
 gi|331666060|ref|ZP_08366954.1| conserved domain protein [Escherichia coli TA143]
 gi|290765647|gb|ADD59608.1| Cold shock-like protein cspB [Escherichia coli O55:H7 str.
          CB9615]
 gi|331057111|gb|EGI29105.1| conserved domain protein [Escherichia coli TA143]
          Length = 71

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI+P    +   DVF+H SA+ +     L EGQ VT+  V++ A G 
Sbjct: 7  GLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFS-VESGAKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|304310767|ref|YP_003810365.1| Cold shock-like protein [gamma proteobacterium HdN1]
 gi|301796500|emb|CBL44708.1| Cold shock-like protein [gamma proteobacterium HdN1]
          Length = 69

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N +KG+GFIT +     G DVF+H  A+ + G   L EGQ V+++
Sbjct: 6  GTVKWFNEEKGFGFITQD---NGGPDVFVHFRAIQAEGFKTLKEGQPVSFN 53


>gi|296271250|ref|YP_003653882.1| cold-shock DNA-binding domain-containing protein [Thermobispora
          bispora DSM 43833]
 gi|296094037|gb|ADG89989.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM
          43833]
          Length = 66

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW++ +KGYGFI  +G    G DVF+H +A+   G  +L +GQ V +D  + 
Sbjct: 3  QGTVKWFDAEKGYGFIAVDG----GKDVFVHYTAILMDGFKSLEQGQRVEFDITEG 54


>gi|266625124|ref|ZP_06118059.1| conserved domain protein [Clostridium hathewayi DSM 13479]
 gi|288862975|gb|EFC95273.1| conserved domain protein [Clostridium hathewayi DSM 13479]
          Length = 65

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          +G++KW+N  KGYGFI    S E G+DVF+H S +   G  +L EG  V +D V
Sbjct: 2  KGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLDEGASVEFDVV 51


>gi|213966043|ref|ZP_03394232.1| conserved domain protein [Corynebacterium amycolatum SK46]
 gi|213951338|gb|EEB62731.1| conserved domain protein [Corynebacterium amycolatum SK46]
          Length = 67

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI P    + G+DVF+H S +   G   L E Q V ++
Sbjct: 3  QGTVKWFNSEKGFGFIAP---ADGGNDVFVHYSEIQGTGFKTLEENQAVEFE 51


>gi|30020489|ref|NP_832120.1| cold shock protein [Bacillus cereus ATCC 14579]
 gi|206971664|ref|ZP_03232614.1| cold shock protein CspA [Bacillus cereus AH1134]
 gi|218231164|ref|YP_002367103.1| cold shock protein CspA [Bacillus cereus B4264]
 gi|218897365|ref|YP_002445776.1| cold shock protein CspA [Bacillus cereus G9842]
 gi|228901011|ref|ZP_04065222.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|228921113|ref|ZP_04084445.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228939557|ref|ZP_04102143.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228952772|ref|ZP_04114844.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228958674|ref|ZP_04120390.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228965387|ref|ZP_04126478.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228972409|ref|ZP_04133019.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228979023|ref|ZP_04139386.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|229044152|ref|ZP_04191834.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|229069923|ref|ZP_04203203.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|229079591|ref|ZP_04212127.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
 gi|229109840|ref|ZP_04239424.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
 gi|229127796|ref|ZP_04256782.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
 gi|229144998|ref|ZP_04273393.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|229150609|ref|ZP_04278823.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|229178759|ref|ZP_04306122.1| Cold shock protein cspB [Bacillus cereus 172560W]
 gi|229190497|ref|ZP_04317494.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|296502953|ref|YP_003664653.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|49035523|sp|Q81DK5|CSPE_BACCR RecName: Full=Cold shock-like protein CspE
 gi|29896040|gb|AAP09321.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gi|206733649|gb|EDZ50821.1| cold shock protein CspA [Bacillus cereus AH1134]
 gi|218159121|gb|ACK59113.1| cold shock protein CspA [Bacillus cereus B4264]
 gi|218544454|gb|ACK96848.1| cold shock protein CspA [Bacillus cereus G9842]
 gi|228592842|gb|EEK50664.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|228604698|gb|EEK62156.1| Cold shock protein cspB [Bacillus cereus 172560W]
 gi|228632696|gb|EEK89311.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|228638447|gb|EEK94882.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|228655561|gb|EEL11413.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
 gi|228673592|gb|EEL28852.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
 gi|228703705|gb|EEL56155.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
 gi|228713191|gb|EEL65086.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|228725177|gb|EEL76452.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|228780687|gb|EEM28902.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|228787284|gb|EEM35253.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228794301|gb|EEM41816.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228800990|gb|EEM47891.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228806891|gb|EEM53438.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228820100|gb|EEM66139.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228838529|gb|EEM83838.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228858608|gb|EEN03057.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|296324005|gb|ADH06933.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|326940103|gb|AEA15999.1| cold shock protein [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 67

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M   G +KW+N +KG+GFI        G+DVF+H SA+   G  +L EGQ V+++
Sbjct: 1  MTLTGKVKWFNSEKGFGFI----EVADGNDVFVHFSAITGDGFKSLDEGQEVSFE 51


>gi|294636901|ref|ZP_06715229.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
 gi|291089892|gb|EFE22453.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
          Length = 81

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      + G DVF+H SA+   G   L EGQ V Y  +Q+   G 
Sbjct: 18 GQVKWFNESKGFGFIEQH---DGGKDVFVHFSAITGDGFKTLAEGQRVEYT-IQDSPRGP 73

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 74 AAANVVAL 81


>gi|323185910|gb|EFZ71267.1| cold shock-like protein cspI [Escherichia coli 1357]
          Length = 62

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+NP+KG+GFITP+  ++   DVF+H SA+ S     LTE Q V +  ++N   G  +
Sbjct: 1  MKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFKTLTENQEVEFG-IENGPKGPAA 56

Query: 67 AENLKL 72
             + L
Sbjct: 57 VHVVAL 62


>gi|15602520|ref|NP_245592.1| MsmB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720931|gb|AAK02739.1| MsmB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 69

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFITP    + G D+F+H S +  +    L EG  V Y  VQ+   G 
Sbjct: 6  GTVKWFNSDKGFGFITP---ADGGKDLFVHFSGIIGSNYRTLNEGDRVEYS-VQDSQRGP 61

Query: 65 YSAENLKLV 73
           SA ++K +
Sbjct: 62 -SAIDVKAI 69


>gi|302544963|ref|ZP_07297305.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302462581|gb|EFL25674.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
          Length = 68

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KGYGFI  EG    G DVF+H S++   G  +L + Q V +  VQ
Sbjct: 3  QGTVKWFNAEKGYGFIAQEG---GGPDVFVHYSSINGNGYRSLADDQRVEFQIVQ 54


>gi|317124225|ref|YP_004098337.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
 gi|315588313|gb|ADU47610.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
          Length = 66

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P   TE G DVF+H S + + G  +L E Q V +D  Q
Sbjct: 3  QGTVKWFNSEKGFGFIAP---TE-GPDVFVHYSEIQTNGYRSLEENQAVEFDVEQ 53


>gi|89073384|ref|ZP_01159908.1| putative cold shock-like protein CspD [Photobacterium sp. SKA34]
 gi|90579121|ref|ZP_01234931.1| putative cold shock-like protein CspD [Vibrio angustum S14]
 gi|89050871|gb|EAR56345.1| putative cold shock-like protein CspD [Photobacterium sp. SKA34]
 gi|90439954|gb|EAS65135.1| putative cold shock-like protein CspD [Vibrio angustum S14]
          Length = 73

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE   +  DD+F H S +   G   L  GQ V Y+ VQ    G 
Sbjct: 4  GTVKWFNNAKGFGFICPE---DGEDDIFAHYSTIQMEGYRTLKAGQQVNYE-VQTGPKGY 59

Query: 65 YSAE 68
          +++E
Sbjct: 60 HASE 63


>gi|308186235|ref|YP_003930366.1| Cold shock-like protein cspD [Pantoea vagans C9-1]
 gi|308056745|gb|ADO08917.1| Cold shock-like protein cspD [Pantoea vagans C9-1]
          Length = 73

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI P G    GDD+F H S +   G   L  GQ V +D
Sbjct: 4  GTVKWFNNSKGFGFICPVG---GGDDIFAHYSTIQMEGYRTLKAGQQVQFD 51


>gi|297538451|ref|YP_003674220.1| cold-shock DNA-binding domain-containing protein [Methylotenera
          sp. 301]
 gi|297257798|gb|ADI29643.1| cold-shock DNA-binding domain protein [Methylotenera sp. 301]
          Length = 67

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFITP+     GDD+F H SA+  +G  +L E   V++D
Sbjct: 4  GLVKWFNDSKGFGFITPDA---GGDDLFAHFSAIVDSGYKSLKENDRVSFD 51


>gi|292487806|ref|YP_003530681.1| cold shock-like protein CspD [Erwinia amylovora CFBP1430]
 gi|292899035|ref|YP_003538404.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
 gi|291198883|emb|CBJ45993.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
 gi|291553228|emb|CBA20273.1| Cold shock-like protein cspD (CPS-D) [Erwinia amylovora CFBP1430]
 gi|312171924|emb|CBX80181.1| Cold shock-like protein cspD (CPS-D) [Erwinia amylovora ATCC
          BAA-2158]
          Length = 75

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI P G    GDD+F H S +   G   L  GQ V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPAG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQ 54


>gi|259047117|ref|ZP_05737518.1| cold shock domain protein CspD [Granulicatella adiacens ATCC
          49175]
 gi|259036167|gb|EEW37422.1| cold shock domain protein CspD [Granulicatella adiacens ATCC
          49175]
          Length = 71

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 36/51 (70%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N +KGYGFI    +T++ +D+F+H + + + G  +L EGQ VT++
Sbjct: 4  GIVKWFNNEKGYGFIR---NTKTDEDIFVHFTGIVAEGFKSLKEGQKVTFE 51


>gi|226365143|ref|YP_002782926.1| cold shock protein [Rhodococcus opacus B4]
 gi|226243633|dbj|BAH53981.1| cold shock protein [Rhodococcus opacus B4]
          Length = 67

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +KW+N +KG+GFI PE   +   DVF+H S + S G   L E Q V+++  Q +
Sbjct: 3  EGIVKWFNSEKGFGFIAPE---DGSADVFVHYSEIQSGGFRTLEENQRVSFEIGQGN 56


>gi|146311055|ref|YP_001176129.1| cold-shock DNA-binding protein family protein [Enterobacter sp.
          638]
 gi|145317931|gb|ABP60078.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
          Length = 73

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFD 51


>gi|82702264|ref|YP_411830.1| cold-shock DNA-binding domain-containing protein [Nitrosospira
          multiformis ATCC 25196]
 gi|82410329|gb|ABB74438.1| cold-shock DNA-binding protein family [Nitrosospira multiformis
          ATCC 25196]
          Length = 71

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 8/67 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFITP+   E  +D+F H SA+     + G   L EGQ VT++ + N 
Sbjct: 4  GTVKWFNGTKGFGFITPD---EGNEDLFAHFSAINIFGNTGGFKTLQEGQKVTFE-ITNG 59

Query: 61 ANGKYSA 67
            GK ++
Sbjct: 60 PKGKQAS 66


>gi|71725897|gb|AAZ39067.1| cold shock protein [Exiguobacterium aurantiacum]
          Length = 67

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L EGQ V ++ V  +
Sbjct: 4  GIVKWFNLEKGFGFIEVEG----GKDVFVHFSAIQTDGYKSLDEGQEVEFEIVDGE 55


>gi|94985111|ref|YP_604475.1| cold-shock DNA-binding domain-containing protein [Deinococcus
          geothermalis DSM 11300]
 gi|94555392|gb|ABF45306.1| cold-shock DNA-binding domain protein [Deinococcus geothermalis
          DSM 11300]
          Length = 89

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI   G+     DVF+H SA+ S+G   L EG  V ++      N 
Sbjct: 3  QGRVKWFNVEKGYGFIEHPGNP----DVFVHYSAIQSSGFRKLNEGDEVEFEVEPGQGNK 58

Query: 64 KYSAENL 70
             A+N+
Sbjct: 59 GPQAKNV 65


>gi|238924737|ref|YP_002938253.1| putative cold-shock DNA-binding domain protein [Eubacterium
          rectale ATCC 33656]
 gi|238876412|gb|ACR76119.1| putative cold-shock DNA-binding domain protein [Eubacterium
          rectale ATCC 33656]
 gi|291526111|emb|CBK91698.1| cold-shock DNA-binding protein family [Eubacterium rectale DSM
          17629]
 gi|291527154|emb|CBK92740.1| cold-shock DNA-binding protein family [Eubacterium rectale
          M104/1]
          Length = 67

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N  KGYGFIT     E G DVF+H S +   G   L EG  V +D
Sbjct: 1  MSKGTVKWFNNQKGYGFITA----EDGKDVFVHFSGLNMEGFKTLEEGAAVEFD 50


>gi|163939029|ref|YP_001643913.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229010524|ref|ZP_04167726.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048]
 gi|229056860|ref|ZP_04196256.1| Cold shock-like protein cspB [Bacillus cereus AH603]
 gi|229132025|ref|ZP_04260888.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196]
 gi|229166069|ref|ZP_04293831.1| Cold shock-like protein cspB [Bacillus cereus AH621]
 gi|2493761|sp|Q45096|CSPA_BACCE RecName: Full=Major cold shock protein CspA
 gi|1405470|emb|CAA63607.1| CspA protein [Bacillus cereus]
 gi|163861226|gb|ABY42285.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
 gi|209972082|gb|ACJ03552.1| cold shock protein [Bacillus thuringiensis serovar bolivia]
 gi|209972084|gb|ACJ03553.1| cold shock protein [Bacillus weihenstephanensis]
 gi|209972102|gb|ACJ03562.1| cold shock protein [Bacillus thuringiensis serovar vazensis]
 gi|209972104|gb|ACJ03563.1| cold shock protein [Bacillus mycoides]
 gi|209972106|gb|ACJ03564.1| cold shock protein [Bacillus weihenstephanensis]
 gi|210077343|gb|ACJ06958.1| cold shock protein [Bacillus thuringiensis serovar navarrensis]
 gi|228617378|gb|EEK74441.1| Cold shock-like protein cspB [Bacillus cereus AH621]
 gi|228651425|gb|EEL07397.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196]
 gi|228720388|gb|EEL71961.1| Cold shock-like protein cspB [Bacillus cereus AH603]
 gi|228750722|gb|EEM00546.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048]
          Length = 67

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++    D
Sbjct: 1  MTVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFEI--ED 54

Query: 61 ANGKYSAENL 70
           N    A+N+
Sbjct: 55 GNRGPQAKNV 64


>gi|319440471|ref|ZP_07989627.1| hypothetical protein CvarD4_01780 [Corynebacterium variabile DSM
          44702]
          Length = 67

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KGYGFI P    + G DVF+H S +   G   L E Q V ++
Sbjct: 3  QGTVKWFNAEKGYGFIAP---NDGGADVFVHYSEIQGNGFRTLEENQQVEFE 51


>gi|291280012|ref|YP_003496847.1| cold shock protein [Deferribacter desulfuricans SSM1]
 gi|290754714|dbj|BAI81091.1| cold shock protein [Deferribacter desulfuricans SSM1]
          Length = 66

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N  KGYGFIT     ++G DVF+H +++   G  +L EG+ V ++
Sbjct: 1  MREGTVKWFNDSKGYGFITE----DNGQDVFVHHTSIQKDGFKSLAEGERVKFE 50


>gi|15596356|ref|NP_249850.1| cold-shock protein [Pseudomonas aeruginosa PAO1]
 gi|116049091|ref|YP_792107.1| cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152986008|ref|YP_001349574.1| cold-shock protein [Pseudomonas aeruginosa PA7]
 gi|218892877|ref|YP_002441746.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58]
 gi|254234293|ref|ZP_04927616.1| hypothetical protein PACG_00132 [Pseudomonas aeruginosa C3719]
 gi|254239529|ref|ZP_04932851.1| hypothetical protein PA2G_00143 [Pseudomonas aeruginosa 2192]
 gi|296390471|ref|ZP_06879946.1| putative cold-shock protein [Pseudomonas aeruginosa PAb1]
 gi|313106131|ref|ZP_07792386.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
 gi|9947082|gb|AAG04548.1|AE004546_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1]
 gi|115584312|gb|ABJ10327.1| probable cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166224|gb|EAZ51735.1| hypothetical protein PACG_00132 [Pseudomonas aeruginosa C3719]
 gi|126192907|gb|EAZ56970.1| hypothetical protein PA2G_00143 [Pseudomonas aeruginosa 2192]
 gi|150961166|gb|ABR83191.1| probable cold-shock protein [Pseudomonas aeruginosa PA7]
 gi|218773105|emb|CAW28917.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58]
 gi|310878888|gb|EFQ37482.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
          Length = 69

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI      +SG DVF+H  A+   G  +L EGQ V +  +Q
Sbjct: 7  GTVKWFNDAKGYGFI----QRDSGPDVFVHYRAIRGEGHRSLVEGQKVEFSVIQ 56


>gi|118616248|ref|YP_904580.1| cold shock protein a, CspA [Mycobacterium ulcerans Agy99]
 gi|118568358|gb|ABL03109.1| cold shock protein a, CspA [Mycobacterium ulcerans Agy99]
          Length = 67

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFITP+  T+   D+F+H S +  +G  +L E Q V ++  Q
Sbjct: 3  QGTVKWFNGEKGFGFITPDDGTK---DLFVHYSEIQCSGYRSLEENQRVQFEVEQ 54


>gi|197117042|ref|YP_002137469.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|197086402|gb|ACH37673.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
          Length = 66

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      ++G DVF+H S++   G  +L EG  VT+D VQ  A G 
Sbjct: 4  GVVKWFNDAKGFGFI----EQDNGVDVFVHFSSIQGDGFKSLVEGDSVTFDVVQG-AKGP 58

Query: 65 YSAENLK 71
           +A  +K
Sbjct: 59 QAANVVK 65


>gi|163940200|ref|YP_001645084.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229011681|ref|ZP_04168864.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
 gi|229060078|ref|ZP_04197449.1| Cold shock protein cspB [Bacillus cereus AH603]
 gi|229133259|ref|ZP_04262090.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
 gi|229167245|ref|ZP_04294986.1| Cold shock protein cspB [Bacillus cereus AH621]
 gi|163862397|gb|ABY43456.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
 gi|228616283|gb|EEK73367.1| Cold shock protein cspB [Bacillus cereus AH621]
 gi|228650203|gb|EEL06207.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
 gi|228719297|gb|EEL70905.1| Cold shock protein cspB [Bacillus cereus AH603]
 gi|228749639|gb|EEL99481.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
          Length = 67

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI        G DVF+H SA+   G  +L EGQ V+++    D
Sbjct: 1  MTLTGKVKWFNSEKGFGFI----EVADGSDVFVHFSAITGDGFKSLDEGQEVSFEV--ED 54

Query: 61 ANGKYSAENL 70
           N    A+N+
Sbjct: 55 GNRGPQAKNV 64


>gi|84495365|ref|ZP_00994484.1| cold shock protein [Janibacter sp. HTCC2649]
 gi|84384858|gb|EAQ00738.1| cold shock protein [Janibacter sp. HTCC2649]
          Length = 67

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAIDTQGYRSLDENQQVEFEVTQ 54


>gi|302385946|ref|YP_003821768.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
 gi|302196574|gb|ADL04145.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
          Length = 66

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N  KG+GFI      E G+D+F+H S +A  G  +L +GQ V ++
Sbjct: 1  MKKGTVKWFNAQKGFGFICD----EEGNDIFVHFSGLAMEGFKSLEDGQSVIFE 50


>gi|152997623|ref|YP_001342458.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
          MWYL1]
 gi|150838547|gb|ABR72523.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
          MWYL1]
          Length = 69

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 8/73 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++K++N  KG+GFIT     + G DVF+H SA+ ++G   L EGQ V +   Q   
Sbjct: 4  VVTGTVKFFNETKGFGFIT----QDQGPDVFVHFSAINTSGFKTLAEGQKVEFQVAQ--- 56

Query: 62 NGKYSAENLKLVP 74
           GK   E   + P
Sbjct: 57 -GKKGPEAQNVTP 68


>gi|33596617|ref|NP_884260.1| cold shock-like protein [Bordetella parapertussis 12822]
 gi|33601232|ref|NP_888792.1| cold shock-like protein [Bordetella bronchiseptica RB50]
 gi|33573318|emb|CAE37301.1| cold shock-like protein [Bordetella parapertussis]
 gi|33575667|emb|CAE32745.1| cold shock-like protein [Bordetella bronchiseptica RB50]
          Length = 81

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KW+N +KGYGFITPE     G D+F H S + + G  +L E Q V++
Sbjct: 15 METGVVKWFNAEKGYGFITPEA---GGKDLFAHFSEIQANGFKSLEENQRVSF 64


>gi|107028274|ref|YP_625369.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia AU 1054]
 gi|116686267|ref|YP_839514.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia HI2424]
 gi|170734893|ref|YP_001774007.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|105897438|gb|ABF80396.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          AU 1054]
 gi|116651982|gb|ABK12621.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          HI2424]
 gi|169820931|gb|ACA95512.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          MC0-3]
          Length = 67

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFITP+   + GDD+F H S + + G   L E Q V+++  Q
Sbjct: 4  GIVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRADGFKTLAENQKVSFETKQ 54


>gi|111022638|ref|YP_705610.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|110822168|gb|ABG97452.1| cold shock protein [Rhodococcus jostii RHA1]
          Length = 67

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +KW+N +KG+GFI PE   +   DVF+H S + S G   L E Q V+++  Q +
Sbjct: 3  EGIVKWFNSEKGFGFIAPE---DGSADVFVHYSEIQSGGFRTLEENQRVSFEIGQGN 56


>gi|257469672|ref|ZP_05633764.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063905|ref|ZP_07928390.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689581|gb|EFS26416.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
          Length = 65

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N DKG+GFIT     E G +VF H S +   G   L E + V Y+  Q
Sbjct: 2  KGTVKWFNQDKGFGFITG----EDGKEVFAHYSQIQKDGFKTLAENEEVVYEVTQ 52


>gi|224826638|ref|ZP_03699739.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
 gi|224601239|gb|EEG07421.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
          Length = 67

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G++KW+N  KG+GFI+P+     G+D+F H S + + G  +L EGQ V+Y
Sbjct: 1  METGTVKWFNDAKGFGFISPDA---GGEDLFAHFSEIRADGFKSLQEGQKVSY 50


>gi|125602073|gb|EAZ41398.1| hypothetical protein OsJ_25919 [Oryza sativa Japonica Group]
          Length = 91

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 38/51 (74%), Gaps = 3/51 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G++KW++  KG+GFITP+   + G+D+F+H+S++ S G  +L +G +V +
Sbjct: 7  KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEF 54


>gi|94311826|ref|YP_585036.1| cold-shock DNA-binding protein family protein [Cupriavidus
          metallidurans CH34]
 gi|93355678|gb|ABF09767.1| DNA-binding transcriptional repressor [Cupriavidus metallidurans
          CH34]
          Length = 69

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI P+   E   ++F H SA+  +G   L EGQ V ++ VQ
Sbjct: 4  GIVKWFNDAKGFGFIKPDDGEE---ELFAHFSAIQMSGFKTLKEGQRVVFEIVQ 54


>gi|238920340|ref|YP_002933855.1| hypothetical protein NT01EI_2450 [Edwardsiella ictaluri 93-146]
 gi|269139515|ref|YP_003296216.1| old-shock domain family protein [Edwardsiella tarda EIB202]
 gi|238869909|gb|ACR69620.1| conserved domain protein [Edwardsiella ictaluri 93-146]
 gi|267985176|gb|ACY85005.1| old-shock domain family protein [Edwardsiella tarda EIB202]
 gi|304559404|gb|ADM42068.1| putative cold shock protein CspE2 [Edwardsiella tarda FL6-60]
          Length = 69

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI      + G DVF+H SA+   G   L EGQ V Y  +Q+   G 
Sbjct: 6  GQVKWFNESKGFGFIEQH---DGGKDVFVHFSAITGDGFKTLAEGQRVEYT-IQDSPRGP 61

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 62 AAANVVAL 69


>gi|167755599|ref|ZP_02427726.1| hypothetical protein CLORAM_01113 [Clostridium ramosum DSM 1402]
 gi|237734348|ref|ZP_04564829.1| cold shock protein cspC [Mollicutes bacterium D7]
 gi|167704538|gb|EDS19117.1| hypothetical protein CLORAM_01113 [Clostridium ramosum DSM 1402]
 gi|229382578|gb|EEO32669.1| cold shock protein cspC [Coprobacillus sp. D7]
          Length = 65

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +KW+N +KG+GFI        G DVF+H S +   G   L EG+LV ++  Q+D
Sbjct: 2  QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQITQDGYKTLNEGELVEFELYQSD 54


>gi|116748179|ref|YP_844866.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116697243|gb|ABK16431.1| cold-shock DNA-binding protein family [Syntrophobacter
          fumaroxidans MPOB]
          Length = 67

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KGYGFI     T+   DVF+H SA+ + G  +L+EG+ V+++ V+    G 
Sbjct: 4  GRVKWFNDKKGYGFI----ETKDQGDVFVHHSAILAEGFRSLSEGEKVSFE-VERGPKGP 58

Query: 65 YSAENLKLVP 74
            A  +K +P
Sbjct: 59 -QAVRVKKIP 67


>gi|307298799|ref|ZP_07578601.1| cold-shock DNA-binding domain protein [Thermotogales bacterium
          mesG1.Ag.4.2]
 gi|306915224|gb|EFN45609.1| cold-shock DNA-binding domain protein [Thermotogales bacterium
          mesG1.Ag.4.2]
          Length = 66

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFIT     + G DVF+H SA+   G   L EGQ V ++ V++   G 
Sbjct: 3  GTVKWFNGTKGYGFITK----DDGGDVFVHFSAIEMDGFKTLDEGQRVEFE-VEDGPKGP 57

Query: 65 YSAE 68
           +A+
Sbjct: 58 QAAK 61


>gi|307947474|ref|ZP_07662807.1| cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4]
 gi|307769292|gb|EFO28520.1| cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4]
          Length = 70

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+IK++N D+G+GFITPE     G DVF+H +A   AG+    EG  +++   ++D
Sbjct: 1  MRETGTIKFFNHDRGFGFITPE---SGGKDVFVHITAFEQAGMPAPEEGAKISF-VAEDD 56

Query: 61 ANGK 64
            G+
Sbjct: 57 RRGR 60


>gi|190571462|ref|YP_001975820.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|213018865|ref|ZP_03334673.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
 gi|190357734|emb|CAQ55185.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|212995816|gb|EEB56456.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
          Length = 83

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 16/81 (19%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----------NLTEGQLVTY 54
          G+IKW+N +KGYGFI PEG    G+DVF+H S +  +G+              +G+ V+Y
Sbjct: 4  GNIKWFNVEKGYGFIKPEG---KGEDVFVHVSTLERSGIRPDELRGEDKKRGMKGERVSY 60

Query: 55 DYVQ---NDANGKYSAENLKL 72
          +  +    +   K SA NL+L
Sbjct: 61 ELKEERGRNGEDKKSAINLRL 81


>gi|146308090|ref|YP_001188555.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina ymp]
 gi|145576291|gb|ABP85823.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
          Length = 69

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI      ESG DVF+H  A+   G   L EGQ V +   Q
Sbjct: 7  GTVKWFNDSKGYGFI----QRESGPDVFVHYRAIRGEGHRTLIEGQKVEFGVTQ 56


>gi|237809065|ref|YP_002893505.1| cold-shock DNA-binding domain-containing protein [Tolumonas
          auensis DSM 9187]
 gi|237501326|gb|ACQ93919.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM
          9187]
          Length = 72

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   E GDD+F H S +   G   L  GQ V ++ VQ    G 
Sbjct: 4  GTVKWFNNAKGFGFICPD---EGGDDIFAHYSTIDMNGYKTLKAGQPVEFE-VQAGPKGS 59

Query: 65 YSAENLKLVPKSSN 78
          ++     +VP +S 
Sbjct: 60 HAT---SIVPTASQ 70


>gi|319790475|ref|YP_004152108.1| cold-shock DNA-binding domain protein [Thermovibrio ammonificans
          HB-1]
 gi|317114977|gb|ADU97467.1| cold-shock DNA-binding domain protein [Thermovibrio ammonificans
          HB-1]
          Length = 68

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW++  KGYGFIT     ++G DVF+H + +   G   L EG+ V+++ +++D
Sbjct: 6  GTVKWFDSKKGYGFITA----DNGQDVFVHYTGINGEGFRTLEEGERVSFNVMESD 57


>gi|226355888|ref|YP_002785628.1| cold-shock DNA-binding domain-containing protein [Deinococcus
          deserti VCD115]
 gi|226317878|gb|ACO45874.1| putative Cold-shock DNA-binding domain protein [Deinococcus
          deserti VCD115]
          Length = 94

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI   G+     DVF+H SA+ S G   L EG  V ++      N 
Sbjct: 3  QGRVKWFNVEKGYGFIEHPGNP----DVFVHYSAIQSGGFRKLNEGDEVEFEVESGQGNK 58

Query: 64 KYSAENL 70
             A+N+
Sbjct: 59 GPQAKNV 65


>gi|49082348|gb|AAT50574.1| PA1159 [synthetic construct]
          Length = 70

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI      +SG DVF+H  A+   G  +L EGQ V +  +Q
Sbjct: 7  GTVKWFNDAKGYGFI----QRDSGPDVFVHYRAIRGEGHRSLVEGQKVEFSVIQ 56


>gi|85711368|ref|ZP_01042427.1| Cold shock protein [Idiomarina baltica OS145]
 gi|85694869|gb|EAQ32808.1| Cold shock protein [Idiomarina baltica OS145]
          Length = 69

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI  +G    G DVF H SA+   G   L EGQ V++   Q
Sbjct: 7  GTVKWFNEAKGFGFIEQQG----GADVFAHFSAITGDGFKTLNEGQRVSFAITQ 56


>gi|47567592|ref|ZP_00238303.1| hypothetical protein BCE_G9241_1119 [Bacillus cereus G9241]
 gi|52144195|ref|YP_082633.1| cold shock protein [Bacillus cereus E33L]
 gi|206968178|ref|ZP_03229134.1| cold shock protein CspA [Bacillus cereus AH1134]
 gi|206976513|ref|ZP_03237419.1| cold shock protein CspA [Bacillus cereus H3081.97]
 gi|217958711|ref|YP_002337259.1| cold shock protein CspA [Bacillus cereus AH187]
 gi|218235518|ref|YP_002365918.1| cold shock protein CspA [Bacillus cereus B4264]
 gi|218896171|ref|YP_002444582.1| cold shock protein CspA [Bacillus cereus G9842]
 gi|222094856|ref|YP_002528916.1| cold shock protein [Bacillus cereus Q1]
 gi|225863086|ref|YP_002748464.1| cold shock protein CspA [Bacillus cereus 03BB102]
 gi|228899812|ref|ZP_04064058.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222]
 gi|228951597|ref|ZP_04113701.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228964179|ref|ZP_04125302.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|229068787|ref|ZP_04202083.1| Cold shock-like protein cspB [Bacillus cereus F65185]
 gi|229078421|ref|ZP_04210982.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2]
 gi|229108691|ref|ZP_04238301.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15]
 gi|229137920|ref|ZP_04266519.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26]
 gi|229154797|ref|ZP_04282912.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342]
 gi|229177647|ref|ZP_04305024.1| Cold shock-like protein cspB [Bacillus cereus 172560W]
 gi|229189322|ref|ZP_04316342.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876]
 gi|47555787|gb|EAL14127.1| unknown [Bacillus cereus G9241]
 gi|51977664|gb|AAU19214.1| cold shock protein [Bacillus cereus E33L]
 gi|206737098|gb|EDZ54245.1| cold shock protein CspA [Bacillus cereus AH1134]
 gi|206745196|gb|EDZ56597.1| cold shock protein CspA [Bacillus cereus H3081.97]
 gi|209972080|gb|ACJ03551.1| cold shock protein [Bacillus thuringiensis serovar kurstaki]
 gi|209972086|gb|ACJ03554.1| cold shock protein [Bacillus thuringiensis serovar israelensis]
 gi|209972090|gb|ACJ03556.1| cold shock protein [Bacillus thuringiensis serovar alesti]
 gi|209972094|gb|ACJ03558.1| cold shock protein [Bacillus mycoides]
 gi|210077341|gb|ACJ06957.1| cold shock protein [Bacillus thuringiensis serovar asturiensis]
 gi|217067961|gb|ACJ82211.1| cold shock protein CspA [Bacillus cereus AH187]
 gi|218163475|gb|ACK63467.1| cold shock protein CspA [Bacillus cereus B4264]
 gi|218545113|gb|ACK97507.1| cold shock protein CspA [Bacillus cereus G9842]
 gi|221238914|gb|ACM11624.1| cold shock protein [Bacillus cereus Q1]
 gi|225786180|gb|ACO26397.1| cold shock protein CspA [Bacillus cereus 03BB102]
 gi|228594116|gb|EEK51915.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876]
 gi|228605837|gb|EEK63281.1| Cold shock-like protein cspB [Bacillus cereus 172560W]
 gi|228628745|gb|EEK85457.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342]
 gi|228645577|gb|EEL01810.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26]
 gi|228674721|gb|EEL29955.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15]
 gi|228704843|gb|EEL57268.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2]
 gi|228714295|gb|EEL66174.1| Cold shock-like protein cspB [Bacillus cereus F65185]
 gi|228795529|gb|EEM43013.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228808058|gb|EEM54573.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228859831|gb|EEN04245.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222]
          Length = 67

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++    D
Sbjct: 1  MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFEI--ED 54

Query: 61 ANGKYSAENL 70
           N    A+N+
Sbjct: 55 GNRGPQAKNV 64


>gi|161520712|ref|YP_001584139.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          multivorans ATCC 17616]
 gi|189353104|ref|YP_001948731.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|221196347|ref|ZP_03569394.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
          CGD2M]
 gi|221203021|ref|ZP_03576040.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
          CGD2]
 gi|221209974|ref|ZP_03582955.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
          CGD1]
 gi|160344762|gb|ABX17847.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
          ATCC 17616]
 gi|189337126|dbj|BAG46195.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|221170662|gb|EEE03128.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
          CGD1]
 gi|221176955|gb|EEE09383.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
          CGD2]
 gi|221182901|gb|EEE15301.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
          CGD2M]
          Length = 67

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI+P+     GDD+F H S +   G   LT+ Q V+Y+
Sbjct: 4  GTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLTDNQKVSYE 51


>gi|288941930|ref|YP_003444170.1| cold-shock DNA-binding domain-containing protein [Allochromatium
          vinosum DSM 180]
 gi|288897302|gb|ADC63138.1| cold-shock DNA-binding domain protein [Allochromatium vinosum DSM
          180]
          Length = 68

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KGYGF+ PEG  E   DVF+H S++   G   L EGQ V ++
Sbjct: 4  GIVKWFNNAKGYGFVQPEGREE---DVFVHFSSIDMDGYKTLREGQKVEFE 51


>gi|91775541|ref|YP_545297.1| cold-shock DNA-binding protein family protein [Methylobacillus
          flagellatus KT]
 gi|91709528|gb|ABE49456.1| cold-shock DNA-binding protein family [Methylobacillus
          flagellatus KT]
          Length = 68

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 6/68 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDANG 63
          G +KW+N  KG+GFITP+   E G D+F H SA+ + G + +L E Q V++D V +   G
Sbjct: 4  GIVKWFNDSKGFGFITPD---EGGSDLFAHFSAIVNEGGYKSLAENQRVSFD-VTDGPKG 59

Query: 64 KYSAENLK 71
          K  A N+K
Sbjct: 60 K-QASNIK 66


>gi|307253880|ref|ZP_07535732.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|307260575|ref|ZP_07542267.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
 gi|306863084|gb|EFM95026.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|306869652|gb|EFN01437.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
          Length = 83

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   + G D+F+H S +  +    L EG  V ++ VQ+   G 
Sbjct: 20 GIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFE-VQDSERGP 75

Query: 65 YSAENLKLV 73
           SA N+K +
Sbjct: 76 -SAVNVKTL 83


>gi|169347342|ref|ZP_02866280.1| hypothetical protein CLOSPI_00057 [Clostridium spiroforme DSM
          1552]
 gi|169293959|gb|EDS76092.1| hypothetical protein CLOSPI_00057 [Clostridium spiroforme DSM
          1552]
          Length = 65

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +KW+N +KG+GFI        G DVF+H S +   G   L EG+LV +D  Q++
Sbjct: 2  QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQIEQDGYKTLNEGELVEFDLYQSE 54


>gi|332162229|ref|YP_004298806.1| cold shock-like protein [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|318606292|emb|CBY27790.1| cold shock protein CspD [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|325666459|gb|ADZ43103.1| cold shock-like protein [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330860565|emb|CBX70864.1| cold shock-like protein cspD [Yersinia enterocolitica W22703]
          Length = 85

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +
Sbjct: 4  GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNF 50


>gi|95928508|ref|ZP_01311255.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
 gi|95135298|gb|EAT16950.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
          Length = 66

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFI  +G    G DVF+H SA+   G  +L EG  V ++ + +   G
Sbjct: 3  QGSVKWFNDAKGFGFIEQDG----GPDVFVHFSAIQGDGFKSLAEGDRVEFE-ITDGQKG 57

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 58 PQAANVIKL 66


>gi|293609525|ref|ZP_06691827.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827977|gb|EFF86340.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122795|gb|ADY82318.1| cold shock-like protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 69

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      ++G DVF H   +A +G   L EGQ VT+   Q    G+
Sbjct: 7  GTVKWFNETKGFGFI----QQDNGPDVFAHFKEIAGSGFKTLHEGQRVTFTVTQ----GQ 58

Query: 65 YSAENLKLVPK 75
               + ++P+
Sbjct: 59 KGPNAVNIIPQ 69


>gi|254491849|ref|ZP_05105028.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
          thiooxidans DMS010]
 gi|224463327|gb|EEF79597.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
          thiooxydans DMS010]
          Length = 69

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI       SG DVF H SA+ S+G   L EGQ V +
Sbjct: 7  GTVKWFNEAKGFGFI----EQASGPDVFAHFSAIVSSGFKTLMEGQKVEF 52


>gi|269103590|ref|ZP_06156287.1| cold shock protein [Photobacterium damselae subsp. damselae CIP
          102761]
 gi|268163488|gb|EEZ41984.1| cold shock protein [Photobacterium damselae subsp. damselae CIP
          102761]
          Length = 68

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI    S   G DVF+H SA+ S G   L EGQ V +  V +   G 
Sbjct: 6  GTVKWFNDEKGFGFI----SGVDGKDVFVHYSAIQSQGRRTLREGQSVEF-IVTDGQKGP 60

Query: 65 YSAENLKL 72
           ++E + L
Sbjct: 61 QASEVVAL 68


>gi|260913997|ref|ZP_05920471.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
 gi|260632084|gb|EEX50261.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
          Length = 69

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKG+GFITP    + G D+F+H S +       L EG  V Y  VQ+   G 
Sbjct: 6  GTVKWFNSDKGFGFITP---ADGGKDLFVHFSGIIGTSYRTLNEGDRVQYS-VQDSQRGP 61

Query: 65 YSAENLKLV 73
           SA +++++
Sbjct: 62 -SAIDVQVI 69


>gi|77917817|ref|YP_355632.1| cold shock protein [Pelobacter carbinolicus DSM 2380]
 gi|77543900|gb|ABA87462.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
          DSM 2380]
          Length = 66

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KGYGFIT     + G DVF+H SA+   G  +L EG+ V+++  Q
Sbjct: 3  QGTVKWFNDAKGYGFIT----QDDGPDVFVHYSAIQVDGYKSLNEGERVSFEVSQ 53


>gi|88800616|ref|ZP_01116177.1| cold-shock DNA-binding domain family protein [Reinekea sp.
          MED297]
 gi|88776671|gb|EAR07885.1| cold-shock DNA-binding domain family protein [Reinekea sp.
          MED297]
          Length = 68

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      ++G DVF H SA+  +G   L EGQ V +   Q     +
Sbjct: 6  GTVKWFNEAKGFGFI----EQQNGPDVFAHFSAITGSGFKTLAEGQKVEFTVTQGQKGPQ 61

Query: 65 YSAENL 70
            AEN+
Sbjct: 62 --AENI 65


>gi|116511520|ref|YP_808736.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
          subsp. cremoris SK11]
 gi|125624636|ref|YP_001033119.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|116107174|gb|ABJ72314.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
          cremoris SK11]
 gi|124493444|emb|CAL98418.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|300071427|gb|ADJ60827.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris
          NZ9000]
          Length = 66

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 5/63 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKGYGFI     TE   DVF +  ++   G     EGQ VT+D V   A G+
Sbjct: 4  GTVKWFNMDKGYGFII----TEDMQDVFAYLLSIQGNGFKKYNEGQKVTFD-VTMTARGR 58

Query: 65 YSA 67
          Y++
Sbjct: 59 YAS 61


>gi|291513784|emb|CBK62994.1| cold-shock DNA-binding protein family [Alistipes shahii WAL 8301]
          Length = 66

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW++  KGYGFIT     E+G ++F+H S +A  G  +L EGQ V ++
Sbjct: 3  GKVKWFDGKKGYGFITA----ENGKEIFVHFSGIAKDGFKSLNEGQAVEFE 49


>gi|212709693|ref|ZP_03317821.1| hypothetical protein PROVALCAL_00741 [Providencia alcalifaciens
          DSM 30120]
 gi|212687504|gb|EEB47032.1| hypothetical protein PROVALCAL_00741 [Providencia alcalifaciens
          DSM 30120]
          Length = 76

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          ++ G++KW+N  KG+GFI P   T+ GDDVF H S +   G   L  GQ V Y
Sbjct: 1  MNTGTVKWFNNAKGFGFICP---TDGGDDVFAHYSTIQMDGYRTLKAGQKVNY 50


>gi|119963512|ref|YP_948311.1| cold shock protein [Arthrobacter aurescens TC1]
 gi|119950371|gb|ABM09282.1| putative cold shock protein [Arthrobacter aurescens TC1]
          Length = 95

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFITP+   ++  DVF+H S + + G   L E Q V ++  Q
Sbjct: 32 GTVKWFNAEKGFGFITPD---DADGDVFVHYSEIQTGGFKTLDENQRVQFEIGQ 82


>gi|118589799|ref|ZP_01547204.1| putative cold shock-like transcription regulator protein [Stappia
          aggregata IAM 12614]
 gi|118437885|gb|EAV44521.1| putative cold shock-like transcription regulator protein [Stappia
          aggregata IAM 12614]
          Length = 70

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 5/74 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+IK++N D+G+GFITPE  ++   DVF+H +A   AG+    EG  +++   ++D
Sbjct: 1  MRENGTIKFFNHDRGFGFITPENGSK---DVFVHITAFEQAGIGTPVEGAKISF-VAEDD 56

Query: 61 ANGK-YSAENLKLV 73
            G+   A  L+L+
Sbjct: 57 RRGRGKQAAQLELL 70


>gi|32034585|ref|ZP_00134741.1| COG1278: Cold shock proteins [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|126207606|ref|YP_001052831.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae
          L20]
 gi|165975574|ref|YP_001651167.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
          3 str. JL03]
 gi|190149388|ref|YP_001967913.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|303249822|ref|ZP_07336026.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
          6 str. Femo]
 gi|303251942|ref|ZP_07338113.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
          2 str. 4226]
 gi|307244926|ref|ZP_07527023.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|307247101|ref|ZP_07529153.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
 gi|307249322|ref|ZP_07531316.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|307251645|ref|ZP_07533550.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|307256143|ref|ZP_07537930.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|307258334|ref|ZP_07540075.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
 gi|307262705|ref|ZP_07544333.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
 gi|126096398|gb|ABN73226.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae
          serovar 5b str. L20]
 gi|165875675|gb|ABY68723.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
          3 str. JL03]
 gi|189914519|gb|ACE60771.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|302649372|gb|EFL79557.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
          2 str. 4226]
 gi|302651389|gb|EFL81541.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
          6 str. Femo]
 gi|306854091|gb|EFM86299.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|306856350|gb|EFM88501.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
 gi|306858616|gb|EFM90678.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|306860842|gb|EFM92850.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|306865324|gb|EFM97220.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|306867518|gb|EFM99365.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
 gi|306871960|gb|EFN03676.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
          Length = 69

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   + G D+F+H S +  +    L EG  V ++ VQ+   G 
Sbjct: 6  GIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFE-VQDSERGP 61

Query: 65 YSAENLKLV 73
           SA N+K +
Sbjct: 62 -SAVNVKTL 69


>gi|17547875|ref|NP_521277.1| cold shock-like transcription regulator protein [Ralstonia
          solanacearum GMI1000]
 gi|17430181|emb|CAD16944.1| probable cold shock-like cspc transcription regulator protein
          [Ralstonia solanacearum GMI1000]
          Length = 67

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G++KW+N  KG+GFITP+     G+D+F H S +  +G   L EG+ V Y
Sbjct: 1  METGTVKWFNESKGFGFITPDA---GGNDLFAHFSEIQGSGFKTLQEGEKVRY 50


>gi|260583587|ref|ZP_05851335.1| cold shock protein [Granulicatella elegans ATCC 700633]
 gi|260158213|gb|EEW93281.1| cold shock protein [Granulicatella elegans ATCC 700633]
          Length = 70

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW++ +KGYGFI+    T++ +D+F+H + + S G   L EGQ V ++  Q
Sbjct: 3  KGIVKWFSNEKGYGFISV---TDTDEDIFVHFTGIISEGFKTLKEGQRVEFEIAQ 54


>gi|255073219|ref|XP_002500284.1| cold-shock DNA binding protein [Micromonas sp. RCC299]
 gi|226515546|gb|ACO61542.1| cold-shock DNA binding protein [Micromonas sp. RCC299]
          Length = 122

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   +  D++F+H++A+ S G  +L E + V +  ++   +G+
Sbjct: 7  GKVKWFNTQKGFGFITPD---DGSDEIFVHQTAIHSEGFRSLREDEPVEF-VIEKSDDGR 62

Query: 65 YSA 67
            A
Sbjct: 63 TKA 65


>gi|270007992|gb|EFA04440.1| hypothetical protein TcasGA2_TC014742 [Tribolium castaneum]
          Length = 192

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + RG  KW+N  KG+GFITP+   + G DVF+H+S +  +G  +L + + V ++   +D
Sbjct: 36 LRRGKCKWFNVAKGWGFITPD---DGGQDVFVHQSVIQMSGFRSLGDDEEVEFECQVSD 91


>gi|224063128|ref|XP_002301004.1| predicted protein [Populus trichocarpa]
 gi|222842730|gb|EEE80277.1| predicted protein [Populus trichocarpa]
          Length = 184

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW++  KG+GFI P+   + G+D+F+H++++ S G   L++GQ V +
Sbjct: 9  GTVKWFSAQKGFGFIAPD---DGGEDLFVHQTSIQSDGFRTLSDGQPVEF 55


>gi|90962044|ref|YP_535960.1| cold shock protein [Lactobacillus salivarius UCC118]
 gi|227891063|ref|ZP_04008868.1| cold shock protein [Lactobacillus salivarius ATCC 11741]
 gi|301300924|ref|ZP_07207096.1| cold shock-like protein CspE [Lactobacillus salivarius
          ACS-116-V-Col5a]
 gi|90821238|gb|ABD99877.1| Cold shock protein [Lactobacillus salivarius UCC118]
 gi|227867152|gb|EEJ74573.1| cold shock protein [Lactobacillus salivarius ATCC 11741]
 gi|300851523|gb|EFK79235.1| cold shock-like protein CspE [Lactobacillus salivarius
          ACS-116-V-Col5a]
          Length = 69

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++  +N +KG+GFITP+   +S DDVF+H SA+ + G   L EGQ V +  ++     +
Sbjct: 4  GTVHKFNREKGFGFITPD---DSKDDVFVHFSAIQTEGFKTLQEGQRVGFVTIEGKRGPQ 60

Query: 65 YSAENLKLV 73
            A N++L+
Sbjct: 61 --AANVELI 67


>gi|224084856|ref|XP_002307424.1| predicted protein [Populus trichocarpa]
 gi|222856873|gb|EEE94420.1| predicted protein [Populus trichocarpa]
          Length = 64

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KG+GFI P+   + G+D+F+H++++ S G   L++GQ V +  V +  +G+
Sbjct: 1  GTVKWFSAQKGFGFIAPD---DGGEDLFVHQTSIQSDGFRTLSDGQPVEF-SVDSGEDGR 56

Query: 65 YSAENL 70
            A ++
Sbjct: 57 TKAVDV 62


>gi|16129516|ref|NP_416075.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. MG1655]
 gi|89108399|ref|AP_002179.1| cold shock protein [Escherichia coli str. K-12 substr. W3110]
 gi|170020092|ref|YP_001725046.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli ATCC 8739]
 gi|170081225|ref|YP_001730545.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|193066912|ref|ZP_03047881.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194436474|ref|ZP_03068575.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|218554119|ref|YP_002387032.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
 gi|218699873|ref|YP_002407502.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
 gi|218705059|ref|YP_002412578.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
 gi|238900777|ref|YP_002926573.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
 gi|293405060|ref|ZP_06649052.1| cold shock-like protein cspB [Escherichia coli FVEC1412]
 gi|298380705|ref|ZP_06990304.1| cold shock-like protein cspB [Escherichia coli FVEC1302]
 gi|300899666|ref|ZP_07117897.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300903929|ref|ZP_07121824.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300919925|ref|ZP_07136387.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300938348|ref|ZP_07153102.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|301025117|ref|ZP_07188711.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|301306487|ref|ZP_07212553.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|301326428|ref|ZP_07219780.1| transcriptional repressor activity CueR [Escherichia coli MS
          78-1]
 gi|301647720|ref|ZP_07247513.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|307138212|ref|ZP_07497568.1| cold shock protein; Qin prophage [Escherichia coli H736]
 gi|307310877|ref|ZP_07590523.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|312969569|ref|ZP_07783752.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|331642145|ref|ZP_08343280.1| conserved domain protein [Escherichia coli H736]
 gi|331652935|ref|ZP_08353940.1| conserved domain protein [Escherichia coli M718]
 gi|544108|sp|P36995|CSPB_ECOLI RecName: Full=Cold shock-like protein CspB; Short=CSP-B
 gi|479003|gb|AAA23618.1| cold-shock protein [Escherichia coli]
 gi|1742552|dbj|BAA15256.1| cold shock protein [Escherichia coli str. K12 substr. W3110]
 gi|1787839|gb|AAC74630.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. MG1655]
 gi|2226341|gb|AAB61739.1| CspB [Escherichia coli str. K-12 substr. W3110]
 gi|169755020|gb|ACA77719.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|169889060|gb|ACB02767.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|192959502|gb|EDV89936.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194424506|gb|EDX40492.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|218360887|emb|CAQ98457.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
 gi|218369859|emb|CAR17633.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
 gi|218432156|emb|CAR13044.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
 gi|238863368|gb|ACR65366.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
 gi|260449320|gb|ACX39742.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|284921462|emb|CBG34531.1| cold shock-like protein [Escherichia coli 042]
 gi|291427268|gb|EFF00295.1| cold shock-like protein cspB [Escherichia coli FVEC1412]
 gi|298278147|gb|EFI19661.1| cold shock-like protein cspB [Escherichia coli FVEC1302]
 gi|300356791|gb|EFJ72661.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300396226|gb|EFJ79764.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|300404089|gb|EFJ87627.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300413046|gb|EFJ96356.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300456684|gb|EFK20177.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|300838293|gb|EFK66053.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|300846844|gb|EFK74604.1| transcriptional repressor activity CueR [Escherichia coli MS
          78-1]
 gi|301074155|gb|EFK88961.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|306909055|gb|EFN39551.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|310337854|gb|EFQ02943.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|312946160|gb|ADR26987.1| Qin prophage; cold shock protein [Escherichia coli O83:H1 str.
          NRG 857C]
 gi|315060857|gb|ADT75184.1| Qin prophage; cold shock protein [Escherichia coli W]
 gi|315136198|dbj|BAJ43357.1| cold shock-like protein cspB [Escherichia coli DH1]
 gi|315253261|gb|EFU33229.1| transcriptional repressor activity CueR [Escherichia coli MS
          85-1]
 gi|320197745|gb|EFW72353.1| Cold shock protein CspB [Escherichia coli EC4100B]
 gi|320643977|gb|EFX13064.1| Qin prophage; cold shock protein [Escherichia coli O157:H- str.
          493-89]
 gi|320649406|gb|EFX17948.1| Qin prophage; cold shock protein [Escherichia coli O157:H- str. H
          2687]
 gi|320660405|gb|EFX27873.1| Qin prophage; cold shock protein [Escherichia coli O55:H7 str.
          USDA 5905]
 gi|323169849|gb|EFZ55505.1| cold shock-like protein cspG [Escherichia coli LT-68]
 gi|323185905|gb|EFZ71262.1| cold shock-like protein cspG [Escherichia coli 1357]
 gi|323378572|gb|ADX50840.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323942036|gb|EGB38214.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323947934|gb|EGB43929.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323973801|gb|EGB68975.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|331038943|gb|EGI11163.1| conserved domain protein [Escherichia coli H736]
 gi|331049033|gb|EGI21105.1| conserved domain protein [Escherichia coli M718]
 gi|332343266|gb|AEE56600.1| cold shock-like protein CspG [Escherichia coli UMNK88]
          Length = 71

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI+P    +   DVF+H SA+ +     L EGQ VT+  +++ A G 
Sbjct: 7  GLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFS-IESGAKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|183396658|dbj|BAG28257.1| hypothetical protein [Desulfotignum balticum]
          Length = 67

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI  E   + G DVF+H S + + G  +L EG  V++D
Sbjct: 4  GTVKWFNDAKGFGFIEQE---DGGKDVFVHHSGINAMGFKSLNEGDRVSFD 51


>gi|325003077|ref|ZP_08124189.1| cold shock protein CspA [Pseudonocardia sp. P1]
          Length = 309

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 5/50 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G++ WY P KGYGF +P+   + G D+F+H SA+ + G+  +TEGQ V +
Sbjct: 81  GTVNWYEPGKGYGFASPD---DGGADIFVHSSAIVTGGV--VTEGQRVAF 125



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60
          + +G+++W++ ++G+GF+ PE   +   DVF+H S  V   G   L EGQ V ++  +ND
Sbjct: 1  MQQGTVRWFDAERGFGFLAPE---DGSPDVFVHASEIVGGGGATVLREGQAVEFEIGEND 57



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           + WY+ DKG+GFI P+   E   DVF+H  A+A  GL  L EG  V ++    D   +  
Sbjct: 162 VAWYDEDKGFGFINPDSGDE---DVFVHARALAE-GLTWLMEGDRVAFEVASGDKGPQAR 217

Query: 67  AENLKLVPKSS 77
             +L   P+++
Sbjct: 218 DVHLVREPRAA 228



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +  Y+ D+G+GFITP+     GDD+F H S V   G   L +G  V +   Q+D
Sbjct: 248 GVVARYDDDRGFGFITPDA---GGDDLFAHVSVV--MGSEPLQKGDRVRFAVRQSD 298


>gi|317493065|ref|ZP_07951489.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919187|gb|EFV40522.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 70

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFITP+  ++   D+F+H SA+ S     L EGQ V +  V+N   G 
Sbjct: 7  GLVKWFDAGKGFGFITPDNGSK---DIFVHFSAIQSTAFKTLDEGQRVEF-TVENGQKGP 62

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 63 SAANVVAL 70


>gi|91083993|ref|XP_975245.1| PREDICTED: similar to AGAP006591-PA [Tribolium castaneum]
          Length = 195

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + RG  KW+N  KG+GFITP+   + G DVF+H+S +  +G  +L + + V ++   +D
Sbjct: 39 LRRGKCKWFNVAKGWGFITPD---DGGQDVFVHQSVIQMSGFRSLGDDEEVEFECQVSD 94


>gi|73539008|ref|YP_299375.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|116695865|ref|YP_841441.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|300694434|ref|YP_003750407.1| cold shock/stress protein, member of the csp-family [Ralstonia
          solanacearum PSI07]
 gi|72122345|gb|AAZ64531.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
 gi|113530364|emb|CAJ96711.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|299076471|emb|CBJ35788.1| cold shock/stress protein, member of the Csp-family [Ralstonia
          solanacearum PSI07]
          Length = 67

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G++KW+N  KG+GFITP+     G+D+F H S +   G  +L EGQ V Y
Sbjct: 1  METGTVKWFNDSKGFGFITPD---AGGNDLFAHFSEIQGNGFKSLQEGQKVRY 50


>gi|329769588|ref|ZP_08260993.1| cold shock protein cspA [Gemella sanguinis M325]
 gi|328838540|gb|EGF88147.1| cold shock protein cspA [Gemella sanguinis M325]
          Length = 66

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG      DVF+H S++   G   L EG  V +  V+  A
Sbjct: 1  MKQGTVKWFNEEKGFGFIAVEGEK----DVFVHFSSIQKEGFKTLKEGDKVEFS-VEEGA 55

Query: 62 NGKYSA 67
           G  +A
Sbjct: 56 RGPQAA 61


>gi|323339484|ref|ZP_08079763.1| cold-shock family protein [Lactobacillus ruminis ATCC 25644]
 gi|323093098|gb|EFZ35691.1| cold-shock family protein [Lactobacillus ruminis ATCC 25644]
          Length = 69

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++ +++  KGYGFITP+   E  +DVF+H SA+  +G   L EGQ V +  V+
Sbjct: 3  KGTVHFFDKKKGYGFITPD---EGNEDVFVHFSALVGSGFKTLEEGQRVEFCEVE 54


>gi|300309840|ref|YP_003773932.1| cold-shock transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
 gi|300072625|gb|ADJ62024.1| cold-shock transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
          Length = 70

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFITP+     G DVF H   + S G  +L+E Q V++D
Sbjct: 6  GVVKWFNDAKGFGFITPDA---GGADVFAHFQDIQSTGFRSLSENQRVSFD 53


>gi|3850772|emb|CAA76694.1| cold shock protein A [Lactococcus lactis subsp. cremoris MG1363]
          Length = 66

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 5/63 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKGYGFI     TE   DVF +  ++   G     EGQ VT+D V   A G+
Sbjct: 4  GTVKWFNMDKGYGFII----TEDMQDVFAYLLSIQGNGFKKYNEGQKVTFD-VTMTARGR 58

Query: 65 YSA 67
          Y++
Sbjct: 59 YAS 61


>gi|51597878|ref|YP_072069.1| major cold shock protein Cspa2 [Yersinia pseudotuberculosis IP
          32953]
 gi|186897074|ref|YP_001874186.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|51591160|emb|CAH22825.1| major cold shock protein Cspa2 [Yersinia pseudotuberculosis IP
          32953]
 gi|186700100|gb|ACC90729.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
          Length = 70

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFITP    + G DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFDAGKGFGFITP---ADGGKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 AAVNVIAL 70


>gi|109897864|ref|YP_661119.1| cold-shock DNA-binding domain-containing protein
          [Pseudoalteromonas atlantica T6c]
 gi|332307142|ref|YP_004434993.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|109700145|gb|ABG40065.1| cold-shock DNA-binding protein family [Pseudoalteromonas
          atlantica T6c]
 gi|332174471|gb|AEE23725.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 68

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H  A+   G   L EGQ V +   Q     +
Sbjct: 6  GTVKWFNESKGFGFI----QQENGPDVFAHFRAITGTGFKTLAEGQKVEFTVTQGQKGPQ 61

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 62 --AENIVVL 68


>gi|332526824|ref|ZP_08402924.1| cold-shock DNA-binding protein family protein [Rubrivivax
          benzoatilyticus JA2]
 gi|332111225|gb|EGJ11257.1| cold-shock DNA-binding protein family protein [Rubrivivax
          benzoatilyticus JA2]
          Length = 69

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFITP+     G D+F H   +   G   L E Q V ++  Q
Sbjct: 6  GTVKWFNESKGYGFITPDA---GGKDLFAHFKEIQGTGFKTLAENQRVEFEVTQ 56


>gi|253581950|ref|ZP_04859174.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
 gi|251836299|gb|EES64836.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
          Length = 65

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N DKG+GFIT     E G +VF H S +   G   L E + V Y+  Q
Sbjct: 2  KGTVKWFNQDKGFGFITG----EDGKEVFAHYSQIQKDGFKTLEENEEVIYEVTQ 52


>gi|229591242|ref|YP_002873361.1| putative cold-shock protein [Pseudomonas fluorescens SBW25]
 gi|229363108|emb|CAY50116.1| putative cold-shock protein [Pseudomonas fluorescens SBW25]
          Length = 91

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G +E   D+F H SA+   G   L  GQ V+++ +Q
Sbjct: 8  GKVKWFNNAKGYGFIIEDGKSE---DLFAHFSAIIMDGYKTLKAGQAVSFEIIQ 58


>gi|255586259|ref|XP_002533782.1| cold shock protein, putative [Ricinus communis]
 gi|223526283|gb|EEF28595.1| cold shock protein, putative [Ricinus communis]
          Length = 257

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG + WY+ +KGYGFI P G    G DVF+H S++ S G  +L  G  + Y+ + ++A G
Sbjct: 111 RGILIWYSNEKGYGFIKPNG---GGVDVFVHSSSLKSNGHIHLGAGMPLEYETIISNA-G 166

Query: 64  KYSAENL 70
           K  A N+
Sbjct: 167 KLQAINV 173


>gi|239618424|ref|YP_002941746.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
          19.5.1]
 gi|239507255|gb|ACR80742.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
          19.5.1]
          Length = 66

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KGYGFIT     + G DVF+H SA+   G   L EGQ V ++
Sbjct: 3  GTVKWFNSSKGYGFIT----KDEGGDVFVHFSAIEVDGFKTLDEGQRVEFE 49


>gi|186473789|ref|YP_001861131.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184196121|gb|ACC74085.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 67

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G +KW+N  KG+GFITP+   + GDD+F H S +   G   L E Q V+++
Sbjct: 1  METGIVKWFNDSKGFGFITPD---KGGDDLFAHFSEITGEGFKTLAENQKVSFE 51


>gi|251787872|ref|YP_003002593.1| cold-shock DNA-binding domain-containing protein [Dickeya zeae
          Ech1591]
 gi|271502353|ref|YP_003335379.1| cold-shock DNA-binding domain-containing protein [Dickeya
          dadantii Ech586]
 gi|247536493|gb|ACT05114.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591]
 gi|270345908|gb|ACZ78673.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586]
          Length = 70

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +  + N   G 
Sbjct: 7  GSVKWFNESKGFGFISP---ADGSKDVFVHFSAIQSDSFKTLYEGQKVEF-VIGNGPKGP 62

Query: 65 YSAENL 70
           SAEN+
Sbjct: 63 -SAENV 67


>gi|224078196|ref|XP_002305502.1| predicted protein [Populus trichocarpa]
 gi|222848466|gb|EEE86013.1| predicted protein [Populus trichocarpa]
          Length = 207

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFI+P+   +  DD+F+H+S++ S G  +L +G+ V +  ++N  +G+
Sbjct: 7  GKVKWFSDQKGFGFISPD---DGSDDLFVHQSSIKSEGYRSLGDGEEVEF-VIENSDDGR 62

Query: 65 YSAENL 70
            A ++
Sbjct: 63 TKAVDV 68


>gi|11493820|gb|AAG35657.1|AF204736_1 cold shock protein C [Yersinia enterocolitica]
          Length = 46

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ
Sbjct: 2  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQ 45


>gi|260855295|ref|YP_003229186.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368]
 gi|257753944|dbj|BAI25446.1| predicted cold shock protein [Escherichia coli O26:H11 str.
          11368]
 gi|323156712|gb|EFZ42850.1| cold shock-like protein cspG [Escherichia coli EPECa14]
          Length = 71

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI+P    +   DVF+H SA+ +     L EGQ VT+  ++  A G 
Sbjct: 7  GLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFS-IERGAKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|284989393|ref|YP_003407947.1| cold-shock DNA-binding domain-containing protein
          [Geodermatophilus obscurus DSM 43160]
 gi|284062638|gb|ADB73576.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
          DSM 43160]
          Length = 131

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+NP+KG+GF+    S E G DVF+H+ A+ S G   L  GQ V +  V
Sbjct: 4  GRVKWFNPEKGFGFL----SREDGPDVFVHKDALPS-GTSELKPGQRVEFGIV 51


>gi|226307843|ref|YP_002767803.1| cold shock protein [Rhodococcus erythropolis PR4]
 gi|229494927|ref|ZP_04388678.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|226186960|dbj|BAH35064.1| probable cold shock protein [Rhodococcus erythropolis PR4]
 gi|229318151|gb|EEN84021.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 67

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +KW+N +KG+GFI PE   +   DVF+H S + S G   L E Q V ++  Q +
Sbjct: 3  EGIVKWFNSEKGFGFIAPE---DGSADVFVHYSEIQSGGFRTLEENQRVAFEIGQGN 56


>gi|261344285|ref|ZP_05971929.1| cold-shock DNA-binding domain protein [Providencia rustigianii
          DSM 4541]
 gi|282567888|gb|EFB73423.1| cold-shock DNA-binding domain protein [Providencia rustigianii
          DSM 4541]
          Length = 71

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +H G +KW++  +GYGFI+P      GDD+F+   ++A+  + +L+EGQ V +   +N
Sbjct: 5  LHMGRVKWFDAKEGYGFISP---CNGGDDIFVTTKSLANKKIKSLSEGQNVEFSVTRN 59


>gi|182678504|ref|YP_001832650.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634387|gb|ACB95161.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 224

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 3/53 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           G++KW++ +KG+GF+    S + G DVF+H S + S+G+ +L EGQ VT   V
Sbjct: 161 GTVKWFDDNKGFGFVQ---SNDGGKDVFVHISILGSSGVQHLAEGQAVTMRVV 210


>gi|257455324|ref|ZP_05620559.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
 gi|257447286|gb|EEV22294.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
          Length = 70

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI  +     G DVF H SA+  +G   L EGQ V++
Sbjct: 7  GTVKWFNESKGFGFIAQD---NGGQDVFAHYSAIQGSGFKTLKEGQRVSF 53


>gi|88857623|ref|ZP_01132266.1| Cold shock protein [Pseudoalteromonas tunicata D2]
 gi|88820820|gb|EAR30632.1| Cold shock protein [Pseudoalteromonas tunicata D2]
          Length = 69

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFI      E+G DVF H  A+   G   L EGQ V +   Q  
Sbjct: 7  GTVKWFNESKGFGFI----EQENGPDVFAHFRAITGTGFKTLVEGQKVQFKVTQGQ 58


>gi|225873243|ref|YP_002754702.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
 gi|225794371|gb|ACO34461.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
          Length = 72

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++G +KW+N  KGYGFI      + G DVF+H SA+   G  +L EG  V +D VQ
Sbjct: 4  YKGKVKWFNNAKGYGFI----GRDDGPDVFVHYSAIQIDGYKSLKEGDEVEFDIVQ 55


>gi|312138017|ref|YP_004005353.1| cold shock protein [Rhodococcus equi 103S]
 gi|325675220|ref|ZP_08154905.1| cold shock protein A [Rhodococcus equi ATCC 33707]
 gi|311887356|emb|CBH46667.1| cold shock protein [Rhodococcus equi 103S]
 gi|325553926|gb|EGD23603.1| cold shock protein A [Rhodococcus equi ATCC 33707]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI PE   +   DVF+H S +  +G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGSGFRTLEENQRVEFEVGQ 54


>gi|257463996|ref|ZP_05628381.1| cold-shock domain-contain protein [Fusobacterium sp. D12]
 gi|317061518|ref|ZP_07926003.1| cold-shock protein [Fusobacterium sp. D12]
 gi|313687194|gb|EFS24029.1| cold-shock protein [Fusobacterium sp. D12]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFIT E       D F+H S +A  G   L EG+ VT++ V     G
Sbjct: 3  KGTVKWFNNEKGFGFITGEDMV----DYFVHFSGIAGEGFKTLEEGEAVTFE-VSEGKKG 57

Query: 64 KYSAENLKL 72
            + E  K+
Sbjct: 58 PMATEVTKV 66


>gi|53720688|ref|YP_109674.1| cold shock-like protein CspD [Burkholderia pseudomallei K96243]
 gi|53723938|ref|YP_104309.1| cold-shock domain-contain protein [Burkholderia mallei ATCC
          23344]
 gi|67641928|ref|ZP_00440693.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
          horse 4]
 gi|76811091|ref|YP_334974.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|83720047|ref|YP_443443.1| cold-shock domain-contain protein [Burkholderia thailandensis
          E264]
 gi|124383483|ref|YP_001027729.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
          10229]
 gi|126440312|ref|YP_001060602.1| CspE-related protein [Burkholderia pseudomallei 668]
 gi|126449743|ref|YP_001082701.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
          10247]
 gi|126452091|ref|YP_001067852.1| cold-shock domain-contain protein [Burkholderia pseudomallei
          1106a]
 gi|134283275|ref|ZP_01769976.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
 gi|167582495|ref|ZP_02375369.1| cold-shock domain family protein [Burkholderia thailandensis
          TXDOH]
 gi|167620585|ref|ZP_02389216.1| cold-shock domain family protein [Burkholderia thailandensis Bt4]
 gi|167721415|ref|ZP_02404651.1| cold-shock domain family protein [Burkholderia pseudomallei DM98]
 gi|167740382|ref|ZP_02413156.1| cold-shock domain family protein [Burkholderia pseudomallei 14]
 gi|167817600|ref|ZP_02449280.1| cold-shock domain family protein [Burkholderia pseudomallei 91]
 gi|167826001|ref|ZP_02457472.1| cold-shock domain family protein [Burkholderia pseudomallei 9]
 gi|167896076|ref|ZP_02483478.1| cold-shock domain family protein [Burkholderia pseudomallei 7894]
 gi|167904462|ref|ZP_02491667.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC
          13177]
 gi|167912723|ref|ZP_02499814.1| cold-shock domain family protein [Burkholderia pseudomallei 112]
 gi|167920683|ref|ZP_02507774.1| cold-shock domain family protein [Burkholderia pseudomallei
          BCC215]
 gi|217424876|ref|ZP_03456373.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
 gi|226198244|ref|ZP_03793815.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|237813987|ref|YP_002898438.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|242317385|ref|ZP_04816401.1| cold-shock domain family protein [Burkholderia pseudomallei
          1106b]
 gi|254175079|ref|ZP_04881740.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
 gi|254180483|ref|ZP_04887081.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
 gi|254190465|ref|ZP_04896973.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|254198469|ref|ZP_04904890.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
 gi|254201381|ref|ZP_04907745.1| cold-shock domain family protein [Burkholderia mallei FMH]
 gi|254206723|ref|ZP_04913074.1| cold-shock domain family protein [Burkholderia mallei JHU]
 gi|254258676|ref|ZP_04949730.1| cold-shock domain family protein [Burkholderia pseudomallei
          1710a]
 gi|254300718|ref|ZP_04968163.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
 gi|254357313|ref|ZP_04973587.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
 gi|257137775|ref|ZP_05586037.1| cold-shock DNA-binding domain protein [Burkholderia thailandensis
          E264]
 gi|52211102|emb|CAH37090.1| cold shock-like protein CspD [Burkholderia pseudomallei K96243]
 gi|52427361|gb|AAU47954.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344]
 gi|76580544|gb|ABA50019.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|83653872|gb|ABC37935.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis E264]
 gi|124291503|gb|ABN00772.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
          10229]
 gi|126219805|gb|ABN83311.1| CspE-like protein [Burkholderia pseudomallei 668]
 gi|126225733|gb|ABN89273.1| cold-shock domain family protein [Burkholderia pseudomallei
          1106a]
 gi|126242613|gb|ABO05706.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
          10247]
 gi|134245470|gb|EBA45563.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
 gi|147747275|gb|EDK54351.1| cold-shock domain family protein [Burkholderia mallei FMH]
 gi|147752265|gb|EDK59331.1| cold-shock domain family protein [Burkholderia mallei JHU]
 gi|148026377|gb|EDK84462.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
 gi|157810480|gb|EDO87650.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
 gi|157938141|gb|EDO93811.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|160696124|gb|EDP86094.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
 gi|169655209|gb|EDS87902.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
 gi|184211022|gb|EDU08065.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
 gi|217392332|gb|EEC32357.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
 gi|225929764|gb|EEH25780.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|237506828|gb|ACQ99146.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|238522943|gb|EEP86385.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
          horse 4]
 gi|242140624|gb|EES27026.1| cold-shock domain family protein [Burkholderia pseudomallei
          1106b]
 gi|254217365|gb|EET06749.1| cold-shock domain family protein [Burkholderia pseudomallei
          1710a]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITPEG    G+D+F H S +   G   L E Q V ++
Sbjct: 4  GTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRVDGFKTLQENQKVEFE 51


>gi|209972096|gb|ACJ03559.1| cold shock protein [Bacillus weihenstephanensis]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++    D
Sbjct: 1  MTVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIENDGFKSLEEGQKVSFEI--ED 54

Query: 61 ANGKYSAENL 70
           N    A+N+
Sbjct: 55 GNRGPQAKNV 64


>gi|218902331|ref|YP_002450165.1| cold shock protein CspA [Bacillus cereus AH820]
 gi|218538225|gb|ACK90623.1| cold shock protein CspA [Bacillus cereus AH820]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++
Sbjct: 1  MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFE 51


>gi|183984791|ref|YP_001853082.1| cold shock protein a, CspA [Mycobacterium marinum M]
 gi|183178117|gb|ACC43227.1| cold shock protein a, CspA [Mycobacterium marinum M]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFITP+  T+   D+F+H S +  +G  +L E Q V ++  Q
Sbjct: 3  QGTVKWFNGEKGFGFITPDDGTK---DLFVHYSEIQGSGYRSLEENQRVQFEVEQ 54


>gi|111021327|ref|YP_704299.1| cold shock protein A [Rhodococcus jostii RHA1]
 gi|226363671|ref|YP_002781453.1| cold shock protein [Rhodococcus opacus B4]
 gi|110820857|gb|ABG96141.1| cold shock protein A [Rhodococcus jostii RHA1]
 gi|226242160|dbj|BAH52508.1| cold shock protein [Rhodococcus opacus B4]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI PE   +   DVF+H S +  +G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGSGFRTLEENQRVEFEVGQ 54


>gi|54022330|ref|YP_116572.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54013838|dbj|BAD55208.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 68

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI PE   +   DVF+H S +  +G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGSGFRTLEENQKVEFEVGQ 54


>gi|119775095|ref|YP_927835.1| cold-shock DNA-binding domain-containing protein [Shewanella
          amazonensis SB2B]
 gi|119767595|gb|ABM00166.1| cold-shock DNA-binding protein family [Shewanella amazonensis
          SB2B]
          Length = 70

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          H G++KW+N +KG+GF+    S ++  DVF+H  A+ + G   L EGQ V++  V+
Sbjct: 6  HTGTVKWFNDEKGFGFL----SRDNDSDVFVHYRAINTQGRRTLKEGQKVSFSLVE 57


>gi|30019286|ref|NP_830917.1| cold shock protein [Bacillus cereus ATCC 14579]
 gi|30261242|ref|NP_843619.1| cold shock protein CspA [Bacillus anthracis str. Ames]
 gi|47526404|ref|YP_017753.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184074|ref|YP_027326.1| cold shock protein CspA [Bacillus anthracis str. Sterne]
 gi|49479225|ref|YP_035367.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|65318514|ref|ZP_00391473.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012]
 gi|118476719|ref|YP_893870.1| cold-shock DNA-binding protein family protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|167635405|ref|ZP_02393719.1| cold shock protein CspA [Bacillus anthracis str. A0442]
 gi|167640251|ref|ZP_02398517.1| cold shock protein CspA [Bacillus anthracis str. A0193]
 gi|170688025|ref|ZP_02879237.1| cold shock protein CspA [Bacillus anthracis str. A0465]
 gi|170707660|ref|ZP_02898112.1| cold shock protein CspA [Bacillus anthracis str. A0389]
 gi|190566579|ref|ZP_03019496.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I]
 gi|196036231|ref|ZP_03103630.1| cold shock protein CspA [Bacillus cereus W]
 gi|196037508|ref|ZP_03104819.1| cold shock protein CspA [Bacillus cereus NVH0597-99]
 gi|196044203|ref|ZP_03111439.1| cold shock protein CspA [Bacillus cereus 03BB108]
 gi|227816020|ref|YP_002816029.1| cold shock protein CspA [Bacillus anthracis str. CDC 684]
 gi|228913810|ref|ZP_04077435.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228926273|ref|ZP_04089347.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228932510|ref|ZP_04095391.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228944843|ref|ZP_04107206.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|229090176|ref|ZP_04221425.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42]
 gi|229120758|ref|ZP_04250001.1| Cold shock-like protein cspB [Bacillus cereus 95/8201]
 gi|229126542|ref|ZP_04255556.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4]
 gi|229183437|ref|ZP_04310662.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1]
 gi|229604794|ref|YP_002865665.1| cold shock protein CspA [Bacillus anthracis str. A0248]
 gi|254682697|ref|ZP_05146558.1| cold shock protein CspA [Bacillus anthracis str. CNEVA-9066]
 gi|254725490|ref|ZP_05187272.1| cold shock protein CspA [Bacillus anthracis str. A1055]
 gi|254734115|ref|ZP_05191828.1| cold shock protein CspA [Bacillus anthracis str. Western North
          America USA6153]
 gi|254740241|ref|ZP_05197933.1| cold shock protein CspA [Bacillus anthracis str. Kruger B]
 gi|254753581|ref|ZP_05205617.1| cold shock protein CspA [Bacillus anthracis str. Vollum]
 gi|254758678|ref|ZP_05210705.1| cold shock protein CspA [Bacillus anthracis str. Australia 94]
 gi|301052771|ref|YP_003790982.1| cold shock protein [Bacillus anthracis CI]
 gi|49035524|sp|Q81GQ6|CSPA_BACCR RecName: Full=Major cold shock protein CspA
 gi|49035527|sp|Q81TW8|CSPA_BACAN RecName: Full=Major cold shock protein CspA
 gi|29894829|gb|AAP08118.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gi|30254856|gb|AAP25105.1| cold shock protein CspA [Bacillus anthracis str. Ames]
 gi|47501552|gb|AAT30228.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178001|gb|AAT53377.1| cold shock protein CspA [Bacillus anthracis str. Sterne]
 gi|49330781|gb|AAT61427.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|118415944|gb|ABK84363.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
          str. Al Hakam]
 gi|167511852|gb|EDR87232.1| cold shock protein CspA [Bacillus anthracis str. A0193]
 gi|167529233|gb|EDR91986.1| cold shock protein CspA [Bacillus anthracis str. A0442]
 gi|170127435|gb|EDS96310.1| cold shock protein CspA [Bacillus anthracis str. A0389]
 gi|170667920|gb|EDT18671.1| cold shock protein CspA [Bacillus anthracis str. A0465]
 gi|190562131|gb|EDV16099.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I]
 gi|195991206|gb|EDX55175.1| cold shock protein CspA [Bacillus cereus W]
 gi|196024842|gb|EDX63513.1| cold shock protein CspA [Bacillus cereus 03BB108]
 gi|196031750|gb|EDX70346.1| cold shock protein CspA [Bacillus cereus NVH0597-99]
 gi|227005778|gb|ACP15521.1| cold shock protein CspA [Bacillus anthracis str. CDC 684]
 gi|228600021|gb|EEK57616.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1]
 gi|228656931|gb|EEL12755.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4]
 gi|228662763|gb|EEL18360.1| Cold shock-like protein cspB [Bacillus cereus 95/8201]
 gi|228693159|gb|EEL46871.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42]
 gi|228814871|gb|EEM61129.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228827200|gb|EEM72953.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228833370|gb|EEM78933.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228845749|gb|EEM90775.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229269202|gb|ACQ50839.1| cold shock protein CspA [Bacillus anthracis str. A0248]
 gi|300374940|gb|ADK03844.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++
Sbjct: 1  MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFE 51


>gi|331004967|ref|ZP_08328377.1| Cold shock protein [gamma proteobacterium IMCC1989]
 gi|330421209|gb|EGG95465.1| Cold shock protein [gamma proteobacterium IMCC1989]
          Length = 98

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KGYGFI P+   + G+D+F H S++   G   L  GQ V++D +  D
Sbjct: 4  GTVKWFNNAKGYGFILPD---DGGEDLFAHYSSIEMDGYKTLKAGQPVSFDTIGGD 56


>gi|323359207|ref|YP_004225603.1| cold shock proteins [Microbacterium testaceum StLB037]
 gi|323275578|dbj|BAJ75723.1| cold shock proteins [Microbacterium testaceum StLB037]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G++KW+N +KGYGFIT       G DVF+H S +  +G   L EGQ V +
Sbjct: 3  QGTVKWFNAEKGYGFIT----VTDGQDVFVHYSNIEMSGFRVLEEGQAVEF 49


>gi|319948998|ref|ZP_08023098.1| cold-shock protein [Dietzia cinnamea P4]
 gi|319437339|gb|EFV92359.1| cold-shock protein [Dietzia cinnamea P4]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KGYGFI PE   +   D+F+H S++   G  +L E Q V ++
Sbjct: 3  QGTVKWFNAEKGYGFIAPE---DGSADLFVHYSSIEGTGFKSLEENQRVEFE 51


>gi|312959376|ref|ZP_07773893.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
 gi|311286093|gb|EFQ64657.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
          Length = 69

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KGYGFI      E G DVF+H  A+   G  +L EGQ V Y  V  +
Sbjct: 7  GNVKWFNDAKGYGFI----QREDGKDVFVHYRAIRGEGHRSLAEGQQVEYAVVSGE 58


>gi|307331134|ref|ZP_07610261.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306883214|gb|EFN14273.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 69

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI  E   + G DVF+H S++  +G  +L + Q V +  VQ     
Sbjct: 3  QGTVKWFNAEKGYGFIAQE---DGGPDVFVHYSSIDGSGYRSLVDEQRVEFQIVQGRKGP 59

Query: 64 KYSAENLKLV 73
          +  AE ++++
Sbjct: 60 Q--AEEVRIL 67


>gi|154502556|ref|ZP_02039616.1| hypothetical protein RUMGNA_00369 [Ruminococcus gnavus ATCC
          29149]
 gi|153796748|gb|EDN79168.1| hypothetical protein RUMGNA_00369 [Ruminococcus gnavus ATCC
          29149]
          Length = 65

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI    S   G+DVF+H S +   G  +L EGQ V ++ V   A G 
Sbjct: 3  GTVKWFNNQKGYGFI----SDSEGNDVFVHYSGLVMDGFKSLEEGQAVEFE-VTEGAKGP 57

Query: 65 YSAENLKL 72
           +   +KL
Sbjct: 58 QATNVVKL 65


>gi|292493470|ref|YP_003528909.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
          Nc4]
 gi|291582065|gb|ADE16522.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
          Nc4]
          Length = 69

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI      ESG D+F+H  ++   G   L EGQ V++  VQ
Sbjct: 7  GTVKWFNDSKGYGFI----QRESGGDLFVHYRSIVGQGHRTLKEGQQVSFVEVQ 56


>gi|187935705|ref|YP_001885709.1| hypothetical protein CLL_A1515 [Clostridium botulinum B str.
          Eklund 17B]
 gi|187723858|gb|ACD25079.1| conserved domain protein [Clostridium botulinum B str. Eklund
          17B]
          Length = 69

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDANG 63
          G +KW+N +KGYGFI    S + GDDVF H S +   G   +L EG+ VT+D +Q+   G
Sbjct: 6  GIVKWFNAEKGYGFI----SCDEGDDVFAHHSQIKENGPEKDLHEGESVTFD-IQDGEKG 60

Query: 64 KYSAENLKL 72
            +    KL
Sbjct: 61 PMATNIQKL 69


>gi|188586202|ref|YP_001917747.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179350889|gb|ACB85159.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 5/57 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW++  KGYGFI      ESG+ DVF+H SA+   G  +L +GQ V ++ V+ D
Sbjct: 4  GTVKWFDSKKGYGFI----ERESGEGDVFVHFSAINEEGFKSLEDGQEVEFEVVEAD 56


>gi|167838062|ref|ZP_02464921.1| cold-shock domain family protein [Burkholderia thailandensis
          MSMB43]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFITPEG    G+D+F H S +   G   L E Q V ++
Sbjct: 4  GTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRVDGFKTLQENQKVEFE 51


>gi|117925208|ref|YP_865825.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
          MC-1]
 gi|117608964|gb|ABK44419.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
          Length = 70

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G++KW+N DKG+GF+  +       DVF+H SA++  G  +L EGQ V +  V
Sbjct: 7  GTVKWFNDDKGFGFVARDNDK---GDVFVHHSAISGTGFKSLKEGQRVEFAVV 56


>gi|310767159|gb|ADP12109.1| cold shock-like protein [Erwinia sp. Ejp617]
          Length = 75

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI P G    GDD+F H S +   G   L  GQ V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPVG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQ 54


>gi|145356187|ref|XP_001422318.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582559|gb|ABP00635.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 76

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N  KG+GFITP   +E   ++F+H++ ++ AG  +  E + V Y+   ++A+G
Sbjct: 1  RGKVKWFNVTKGFGFITPHDGSE---EIFVHQTGISRAGFRSAWEDEEVEYEV--SNADG 55

Query: 64 KYSAENL 70
          +  A N+
Sbjct: 56 RPVAVNV 62


>gi|77920396|ref|YP_358211.1| cold shock proteins [Pelobacter carbinolicus DSM 2380]
 gi|77546479|gb|ABA90041.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
          DSM 2380]
          Length = 85

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           G++KW+N  KG+GFI      ++G DVF+H SA+   G  +L EG  V++D V
Sbjct: 22 EGTVKWFNDAKGFGFI----EQDNGPDVFVHFSAIQGEGFKSLVEGDRVSFDVV 71


>gi|209695649|ref|YP_002263578.1| cold shock-like protein CspD [Aliivibrio salmonicida LFI1238]
 gi|208009601|emb|CAQ79897.1| cold shock-like protein CspD [Aliivibrio salmonicida LFI1238]
          Length = 73

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PEG  E G D+F H S +   G   L  GQ VTY+ +     G 
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIEMDGYRTLKAGQAVTYE-IHEGPKGY 59

Query: 65 YSAE 68
          +++E
Sbjct: 60 HASE 63


>gi|50955729|ref|YP_063017.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952211|gb|AAT89912.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 73

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 6/55 (10%)

Query: 6  SIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58
          ++KW+N  KG+GFI P +GST    DVF+H S +A+ G + NL E Q V YD  Q
Sbjct: 10 TVKWFNSKKGFGFIAPDDGST----DVFVHYSEIAATGGYRNLDENQKVEYDLAQ 60


>gi|149187680|ref|ZP_01865977.1| cold shock protein [Vibrio shilonii AK1]
 gi|148838560|gb|EDL55500.1| cold shock protein [Vibrio shilonii AK1]
          Length = 69

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H S + + G   L EGQ V +   Q     +
Sbjct: 7  GTVKWFNETKGFGFI----QQENGPDVFAHFSNIKADGFRTLAEGQKVAFKVTQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AE + LV
Sbjct: 63 --AEEITLV 69


>gi|307823664|ref|ZP_07653893.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307735649|gb|EFO06497.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 66

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI      E+G DVF+H   + S+G  +L EGQ V +   Q
Sbjct: 4  GTVKWFNAEKGFGFI----QQENGPDVFVHFRNINSSGFKSLDEGQKVQFTVTQ 53


>gi|158321201|ref|YP_001513708.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus
          oremlandii OhILAs]
 gi|158141400|gb|ABW19712.1| cold-shock DNA-binding domain protein [Alkaliphilus oremlandii
          OhILAs]
          Length = 66

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GFI+ +G     +DVF+H SA+   G   L EGQ V ++ V
Sbjct: 4  GIVKWFNNEKGFGFISVQGE----EDVFVHFSAINGDGFKTLEEGQEVEFEVV 52


>gi|15234010|ref|NP_195580.1| GRP2 (GLYCINE RICH PROTEIN 2); double-stranded DNA binding / mRNA
          binding / nucleic acid binding / single-stranded DNA
          binding [Arabidopsis thaliana]
 gi|13430580|gb|AAK25912.1|AF360202_1 putative glycine-rich protein GRP2 [Arabidopsis thaliana]
 gi|14326487|gb|AAK60289.1|AF385696_1 AT4g38680/F20M13_240 [Arabidopsis thaliana]
 gi|259445|gb|AAB24074.1| glycine-rich protein [Arabidopsis thaliana]
 gi|4467155|emb|CAB37524.1| glycine-rich protein 2 (GRP2) [Arabidopsis thaliana]
 gi|7270851|emb|CAB80532.1| glycine-rich protein 2 (GRP2) [Arabidopsis thaliana]
 gi|14532850|gb|AAK64107.1| putative glycine-rich protein 2 [Arabidopsis thaliana]
 gi|22137152|gb|AAM91421.1| AT4g38680/F20M13_240 [Arabidopsis thaliana]
 gi|332661564|gb|AEE86964.1| glycine rich protein 2 [Arabidopsis thaliana]
          Length = 203

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 33/44 (75%), Gaps = 3/44 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
           +GS+KW++  KG+GFITP+   + GDD+F+H+S++ S G  +L
Sbjct: 11 RKGSVKWFDTQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSL 51


>gi|297798314|ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297312877|gb|EFH43300.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 257

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G + W+N  KGYGFITP+  +E   ++F+H+S++ S G  +L EG  V +   Q  ++GK
Sbjct: 13 GKVNWFNDSKGYGFITPDDRSE---ELFVHQSSIVSEGYRSLAEGDSVEFAITQG-SDGK 68

Query: 65 YSA 67
            A
Sbjct: 69 TKA 71


>gi|39995317|ref|NP_951268.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA]
 gi|39982079|gb|AAR33541.1| cold-shock domain family protein [Geobacter sulfurreducens PCA]
 gi|298504323|gb|ADI83046.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
          KN400]
          Length = 66

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+      E+G+DVF+H SA+   G  +L EG  VT++  +
Sbjct: 4  GTVKWFNDSKGFGFL----EQENGEDVFVHFSAINGNGFKSLAEGDRVTFEVTK 53


>gi|163802256|ref|ZP_02196151.1| Cold shock protein [Vibrio sp. AND4]
 gi|159174061|gb|EDP58871.1| Cold shock protein [Vibrio sp. AND4]
          Length = 69

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI    S ESGDD+F+H  ++   G   L EG+ V++
Sbjct: 7  GTVKWFNEAKGFGFI----SQESGDDLFVHFRSILGDGFKKLVEGEQVSF 52


>gi|33596619|ref|NP_884262.1| cold shock-like protein [Bordetella parapertussis 12822]
 gi|33601234|ref|NP_888794.1| cold shock-like protein [Bordetella bronchiseptica RB50]
 gi|33573320|emb|CAE37303.1| cold shock-like protein [Bordetella parapertussis]
 gi|33575669|emb|CAE32747.1| cold shock-like protein [Bordetella bronchiseptica RB50]
          Length = 68

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI P+  ++   D+F H S + S G  +L E Q V+++  Q      
Sbjct: 4  GIVKWFNAEKGYGFIMPDDGSK---DLFAHYSEIRSEGYKSLQENQRVSFEVGQGPKGP- 59

Query: 65 YSAENLKLV 73
           SA+N+K++
Sbjct: 60 -SAKNIKVI 67


>gi|78062001|ref|YP_371909.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
          383]
 gi|115358813|ref|YP_775951.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria AMMD]
 gi|134293656|ref|YP_001117392.1| cold-shock DNA-binding protein family protein [Burkholderia
          vietnamiensis G4]
 gi|170700879|ref|ZP_02891866.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171318778|ref|ZP_02907917.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|172063543|ref|YP_001811194.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|206563659|ref|YP_002234422.1| putative cold shock protein [Burkholderia cenocepacia J2315]
 gi|77969886|gb|ABB11265.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
 gi|115284101|gb|ABI89617.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
          AMMD]
 gi|134136813|gb|ABO57927.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
          G4]
 gi|170134197|gb|EDT02538.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171096010|gb|EDT40941.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|171996060|gb|ACB66978.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MC40-6]
 gi|198039699|emb|CAR55669.1| putative cold shock protein [Burkholderia cenocepacia J2315]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFITP+     GDD+F H S + + G   L E Q V+++  Q
Sbjct: 4  GIVKWFNDSKGFGFITPD---NGGDDLFAHFSEIRADGFKTLAENQKVSFETKQ 54


>gi|229823948|ref|ZP_04450017.1| hypothetical protein GCWU000282_01252 [Catonella morbi ATCC
          51271]
 gi|229786302|gb|EEP22416.1| hypothetical protein GCWU000282_01252 [Catonella morbi ATCC
          51271]
          Length = 90

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 5/59 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G++K++N DKG+GFI    + + G DVF+H S + + G   L EGQ V+YD VQ  + G
Sbjct: 28 GTVKFFNVDKGFGFI----AGQDGVDVFVHFSNIQADGFKTLNEGQTVSYD-VQETSRG 81


>gi|296141549|ref|YP_003648792.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
          DSM 20162]
 gi|296029683|gb|ADG80453.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
          DSM 20162]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P    +  DDVF+H S +   G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIAP---ADGSDDVFVHYSEIQGNGFRTLEENQQVEFEVGQ 54


>gi|170769983|ref|ZP_02904436.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
 gi|170121167|gb|EDS90098.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
          Length = 70

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFI+P   ++ G DVF+H +A+ S     L E Q V +   Q
Sbjct: 7  GLVKWFNADKGFGFISP---SDGGKDVFVHFTAIQSNEFRTLNENQKVEFSIEQ 57


>gi|70905153|gb|AAZ14100.1| cold shock protein [Pseudomonas fluorescens]
          Length = 69

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
            G++KW+N +KG+GFITP+G    GDD+F+H       G  +L EGQ V++  V
Sbjct: 5  QTGTVKWFNDEKGFGFITPQG---GGDDLFVH-FPFQGTGFKSLQEGQKVSFVVV 55


>gi|259505713|ref|ZP_05748615.1| cold shock protein [Corynebacterium efficiens YS-314]
 gi|259166686|gb|EEW51240.1| cold shock protein [Corynebacterium efficiens YS-314]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI P   ++   DVF+H S +   G  NL E Q V ++
Sbjct: 3  QGTVKWFNAEKGFGFIAP---SDGSADVFVHYSEIQGNGFRNLEENQQVEFE 51


>gi|259908938|ref|YP_002649294.1| Cold shock protein [Erwinia pyrifoliae Ep1/96]
 gi|224964560|emb|CAX56073.1| Cold shock protein [Erwinia pyrifoliae Ep1/96]
          Length = 74

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI P G    GDD+F H S +   G   L  GQ V +D  Q
Sbjct: 3  GTVKWFNNAKGFGFICPVG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQ 53


>gi|229588789|ref|YP_002870908.1| major cold shock protein [Pseudomonas fluorescens SBW25]
 gi|229360655|emb|CAY47513.1| major cold shock protein [Pseudomonas fluorescens SBW25]
          Length = 69

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G++KW+N  KGYGFI      E G DVF+H  A+   G  +L EGQ V Y  V
Sbjct: 7  GNVKWFNDAKGYGFI----QREDGKDVFVHYRAIRGEGHRSLAEGQQVEYAVV 55


>gi|322435623|ref|YP_004217835.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321163350|gb|ADW69055.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 89

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G + W+N  KG+GFITP    E+G DVF+H SA+   G   L EG  V ++ ++  + G+
Sbjct: 6  GKVAWFNNGKGFGFITP----ETGPDVFVHYSAIMLDGFKTLDEGDTVDFE-IETGSTGR 60

Query: 65 YSAENL 70
            A  +
Sbjct: 61 PEARKV 66


>gi|237800557|ref|ZP_04589018.1| cold shock domain family protein [Pseudomonas syringae pv. oryzae
          str. 1_6]
 gi|331023417|gb|EGI03474.1| cold shock domain family protein [Pseudomonas syringae pv. oryzae
          str. 1_6]
          Length = 96

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  +  +D+F H SA+   G   L  GQ V++D +Q
Sbjct: 4  GKVKWFNNAKGYGFILEDGKPD--EDLFAHYSAIQMEGYKTLKAGQPVSFDIIQ 55


>gi|237786535|ref|YP_002907240.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
 gi|237759447|gb|ACR18697.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI PE  ++   DVF+H + +  +G   L E Q V ++
Sbjct: 3  QGTVKWFNAEKGFGFIAPEDGSQ---DVFVHYTEIQGSGFRTLEENQKVEFE 51


>gi|88857116|ref|ZP_01131759.1| Cold shock protein [Pseudoalteromonas tunicata D2]
 gi|88820313|gb|EAR30125.1| Cold shock protein [Pseudoalteromonas tunicata D2]
          Length = 69

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N  KG+GFI       SG DVF H SA++  G   L EGQ V +   Q
Sbjct: 7  GSVKWFNEAKGFGFI----EQASGPDVFAHFSAISGDGFKTLAEGQRVQFSVSQ 56


>gi|197105102|ref|YP_002130479.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
 gi|196478522|gb|ACG78050.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
          Length = 202

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G +KW++  KGYGFI P+   ++   DV LH +++ S+G  +  EG L+T D V+ 
Sbjct: 29 GRVKWFDAGKGYGFIVPDDPAQTDLKDVLLHVTSLRSSGREHCLEGSLITCDVVRR 84



 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           + +  +KW+N  KGYGF+  +  ++ G D+F+H   +  +G+ +L  G+ V   + +
Sbjct: 133 LEQAKVKWFNRAKGYGFVIRD--SQPG-DIFVHIETLRRSGMEDLQPGENVMVRFAE 186


>gi|83717433|ref|YP_439199.1| cold-shock domain-contain protein [Burkholderia thailandensis
          E264]
 gi|167577641|ref|ZP_02370515.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis TXDOH]
 gi|167615783|ref|ZP_02384418.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis Bt4]
 gi|257142321|ref|ZP_05590583.1| cold-shock domain-contain protein [Burkholderia thailandensis
          E264]
 gi|83651258|gb|ABC35322.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis E264]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N  KG+GFITP+     GDD+F H S + S G   L + Q V+++
Sbjct: 1  METGTVKWFNETKGFGFITPD---SGGDDLFAHFSEIRSEGYKTLADNQKVSFE 51


>gi|239918416|ref|YP_002957974.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC
          2665]
 gi|281415387|ref|ZP_06247129.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC
          2665]
 gi|6225210|sp|O30875|CSPA_MICLC RecName: Full=Major cold shock protein
 gi|2425105|gb|AAB70836.1| major cold-shock protein [Micrococcus luteus NCTC 2665]
 gi|239839623|gb|ACS31420.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC
          2665]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI PE ++    DVF+H SA+   G   L E   V ++  Q+   G 
Sbjct: 4  GTVKWFNAEKGYGFIAPEDNSA---DVFVHFSAIQGNGFKELQENDRVEFE-TQDGPKGL 59

Query: 65 YSAENLKL 72
           +A   KL
Sbjct: 60 QAANVTKL 67


>gi|148244980|ref|YP_001219674.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA]
 gi|146326807|dbj|BAF61950.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA]
          Length = 67

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 8/75 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW++  KG+GFI      ESG DVF+H  A+   G  +L EGQ V +D     
Sbjct: 1  MSTTGKVKWFDAKKGFGFI----EQESGGDVFVHFRAIQGDGYKSLEEGQEVEFDL---- 52

Query: 61 ANGKYSAENLKLVPK 75
           +G+   + + + PK
Sbjct: 53 EDGEKGPQAVNVFPK 67


>gi|296273539|ref|YP_003656170.1| cold-shock DNA-binding domain-containing protein [Arcobacter
          nitrofigilis DSM 7299]
 gi|296097713|gb|ADG93663.1| cold-shock DNA-binding domain protein [Arcobacter nitrofigilis
          DSM 7299]
          Length = 72

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTEGQLVTYDYVQNDAN 62
          GS+KW+N +KG+GFI  E     G DVF+H   + S G    +L +GQ VT++  Q D  
Sbjct: 7  GSVKWFNSEKGFGFIEQE---NGGKDVFVHYRNINSTGYGRVSLEDGQKVTFEVAQGDKG 63

Query: 63 GKYSAENL 70
              AEN+
Sbjct: 64 --LQAENV 69


>gi|269793785|ref|YP_003313240.1| cold shock domain-containing protein CspD [Sanguibacter keddieii
           DSM 10542]
 gi|269095970|gb|ACZ20406.1| cold shock domain protein CspD [Sanguibacter keddieii DSM 10542]
          Length = 317

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++ WY P KGYGF+TP+G    G ++F H SA+   G+  + EGQ V +  V+ +
Sbjct: 82  GTVTWYEPTKGYGFVTPDG---GGAEIFAHSSAIVGGGV--IAEGQRVAFLVVEGE 132



 Score = 38.1 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 6/56 (10%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           ++ WY+  KG+GF+TP    +SG+ D F+H  ++A  G   L EG  V++  V  D
Sbjct: 164 TVSWYDAGKGFGFVTP----DSGEPDAFVHARSLA-GGATELVEGDRVSFSVVPGD 214



 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 5/59 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60
          +G+++W++ ++G+GF+  +   +  DD+F+H S +     G  +L EGQ V ++  + D
Sbjct: 3  QGTVRWFDAERGFGFLALD---DGADDLFVHASEIVGNDDGTQSLREGQSVEFEIGEGD 58



 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +  Y+ ++G+GFITP+     G D+F+H S V       L EG  V +   Q+D
Sbjct: 256 GVVARYDAERGFGFITPD---SGGPDLFVHVSVVREGQ--ELYEGDRVRFQVRQSD 306


>gi|119946327|ref|YP_944007.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119864931|gb|ABM04408.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 70

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GF+T +     G DVF H  A+AS G   L EGQ V+++  Q
Sbjct: 7  GLVKWFDEAKGFGFLTQD---NGGADVFCHFRAIASEGFKTLAEGQKVSFEVEQ 57


>gi|126656639|ref|ZP_01727853.1| cold shock protein [Cyanothece sp. CCY0110]
 gi|126621859|gb|EAZ92567.1| cold shock protein [Cyanothece sp. CCY0110]
          Length = 64

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 6/55 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW++  KGYGFI P+   + GDD+F+H S V S    +L EGQ V Y+  Q
Sbjct: 3  QGQVKWFDVQKGYGFIAPQ---DGGDDLFVHYSEVQSK---SLEEGQTVEYEVGQ 51


>gi|312138659|ref|YP_004005995.1| cold shock protein [Rhodococcus equi 103S]
 gi|325676272|ref|ZP_08155951.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
 gi|311887998|emb|CBH47310.1| cold shock protein [Rhodococcus equi 103S]
 gi|325552833|gb|EGD22516.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
          Length = 67

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI P+   +   DVF+H SA+ + G   L E Q V ++  Q
Sbjct: 4  GTVKWFNAEKGFGFIAPD---DGSADVFVHYSAIQTNGFRTLEENQRVRFEIGQ 54


>gi|294500244|ref|YP_003563944.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294350181|gb|ADE70510.1| cold shock protein [Bacillus megaterium QM B1551]
          Length = 70

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 6/62 (9%)

Query: 3  HRGSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          H+G++K +N  KG GFITPE GS E    VF+H +A+      NL+EGQ V ++ +Q  A
Sbjct: 4  HKGTVKSFNESKGSGFITPEDGSKE----VFVHSNAIDHEEYKNLSEGQKVEFE-IQEGA 58

Query: 62 NG 63
           G
Sbjct: 59 KG 60


>gi|15839211|ref|NP_299899.1| temperature acclimation protein B [Xylella fastidiosa 9a5c]
 gi|9107847|gb|AAF85419.1|AE004068_15 temperature acclimation protein B [Xylella fastidiosa 9a5c]
          Length = 85

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFIT    + +G D+F+H  A+   G  +L EGQ V++  VQ
Sbjct: 23 GTVKWFNDNKGFGFIT----SNNGPDLFVHYRAIQGNGFKSLQEGQKVSFVAVQ 72


>gi|54308343|ref|YP_129363.1| putative cold shock-like protein CspD [Photobacterium profundum
          SS9]
 gi|46912771|emb|CAG19561.1| putative cold shock-like protein CspD [Photobacterium profundum
          SS9]
          Length = 73

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE   E   D+F H S +   G   L  GQ V Y+ +Q    G 
Sbjct: 4  GTVKWFNNAKGFGFICPE---EGEGDIFAHYSTIQMDGYRTLKAGQQVNYE-IQTGPKGH 59

Query: 65 YSAENLKLVP 74
          +++E   +VP
Sbjct: 60 HASE---IVP 66


>gi|116627693|ref|YP_820312.1| cold shock protein [Streptococcus thermophilus LMD-9]
 gi|116100970|gb|ABJ66116.1| cold-shock DNA-binding protein family [Streptococcus thermophilus
          LMD-9]
 gi|312278226|gb|ADQ62883.1| Cold shock-like protein cspE [Streptococcus thermophilus ND03]
          Length = 66

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFIT    +E G D+F H S++ S G  +L E Q V +D
Sbjct: 4  GTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFD 50


>gi|28199859|ref|NP_780173.1| temperature acclimation protein B [Xylella fastidiosa Temecula1]
 gi|71275239|ref|ZP_00651526.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon]
 gi|71899540|ref|ZP_00681696.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|71899925|ref|ZP_00682072.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|170731236|ref|YP_001776669.1| cold-shock DNA-binding domain-containing protein [Xylella
          fastidiosa M12]
 gi|182682610|ref|YP_001830770.1| cold-shock DNA-binding domain-containing protein [Xylella
          fastidiosa M23]
 gi|28057980|gb|AAO29822.1| temperature acclimation protein B [Xylella fastidiosa Temecula1]
 gi|71164048|gb|EAO13763.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon]
 gi|71730288|gb|EAO32372.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|71730669|gb|EAO32744.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|167966029|gb|ACA13039.1| putative cold-shock DNA-binding domain protein [Xylella
          fastidiosa M12]
 gi|182632720|gb|ACB93496.1| cold-shock DNA-binding domain protein [Xylella fastidiosa M23]
 gi|307578893|gb|ADN62862.1| temperature acclimation protein B [Xylella fastidiosa subsp.
          fastidiosa GB514]
          Length = 73

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFIT    + +G D+F+H  A+   G  +L EGQ V++  VQ
Sbjct: 11 GTVKWFNDNKGFGFIT----SNNGPDLFVHYRAIQGNGFKSLQEGQKVSFVAVQ 60


>gi|170693647|ref|ZP_02884805.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
 gi|170141429|gb|EDT09599.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
          Length = 67

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT   S   G+D+F H S + S G  +L E Q V++D V+   
Sbjct: 1  METGIVKWFNDAKGFGFIT---SDSGGEDLFAHFSEIRSEGFKSLKENQRVSFD-VKAGP 56

Query: 62 NGKYSA 67
           GK +A
Sbjct: 57 KGKQAA 62


>gi|297824943|ref|XP_002880354.1| hypothetical protein ARALYDRAFT_480954 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297326193|gb|EFH56613.1| hypothetical protein ARALYDRAFT_480954 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 198

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 3/45 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47
           +GS+KW++  KG+GFITP    + GDD+F+H+S++ S G  +L 
Sbjct: 14 RKGSVKWFDTQKGFGFITP---NDGGDDLFVHQSSIRSEGFRSLA 55


>gi|227502480|ref|ZP_03932529.1| cold shock protein [Corynebacterium accolens ATCC 49725]
 gi|306835053|ref|ZP_07468097.1| cold shock protein CspA [Corynebacterium accolens ATCC 49726]
 gi|227076849|gb|EEI14812.1| cold shock protein [Corynebacterium accolens ATCC 49725]
 gi|304569064|gb|EFM44585.1| cold shock protein CspA [Corynebacterium accolens ATCC 49726]
          Length = 67

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KGYGFI  E   + G D+F+H S +  +G   L E Q V+++
Sbjct: 3  QGTVKWFNSEKGYGFIERE---DGGGDIFVHYSEIQGSGFRTLEENQKVSFE 51


>gi|91793188|ref|YP_562839.1| CspD, cold shock [Shewanella denitrificans OS217]
 gi|91715190|gb|ABE55116.1| cold-shock DNA-binding protein family [Shewanella denitrificans
          OS217]
          Length = 67

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI P+   + GDDVF H S +   G   L  GQ V ++  Q
Sbjct: 4  GTVKWFNNAKGFGFICPD---QGGDDVFAHYSTIEMEGYRTLKAGQPVQFEVEQ 54


>gi|77361880|ref|YP_341455.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Pseudoalteromonas haloplanktis
          TAC125]
 gi|77362296|ref|YP_341870.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125]
 gi|315122994|ref|YP_004065000.1| cold shock protein [Pseudoalteromonas sp. SM9913]
 gi|76876791|emb|CAI88013.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Pseudoalteromonas haloplanktis
          TAC125]
 gi|76877207|emb|CAI89424.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125]
 gi|315016754|gb|ADT70091.1| cold shock protein [Pseudoalteromonas sp. SM9913]
          Length = 69

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFI      ESG DVF H SA++  G   L EGQ V +   Q     +
Sbjct: 7  GTVKFFNEAKGFGFI----EQESGADVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AEN+  +
Sbjct: 63 --AENIVCI 69


>gi|2493765|sp|Q45100|CSPE_BACCE RecName: Full=Cold shock-like protein CspE
 gi|1405478|emb|CAA63611.1| CspE protein [Bacillus cereus]
          Length = 54

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M   G +KW+N +KG+GFI        G DVF+H SA+   G  +L EGQ V+++
Sbjct: 1  MTLTGKVKWFNSEKGFGFI----EVADGSDVFVHFSAITGDGFKSLDEGQEVSFE 51


>gi|456238|emb|CAA51842.1| cold shock protein [Bacillus subtilis]
 gi|740007|prf||2004289D cold shock protein
          Length = 57

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +KW+N +KG+G I  EG     DDVF+H SA+   G   L E Q V+++ V+ +
Sbjct: 1  VKWFNSEKGFGLIEVEGQ----DDVFVHFSAIQGEGFKTLEESQAVSFEIVEGN 50


>gi|307107809|gb|EFN56051.1| hypothetical protein CHLNCDRAFT_145510 [Chlorella variabilis]
          Length = 139

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 9/66 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW     GYGFITP+     G+D+F+H++A+ S G  +L EG+ V + +V+   +G+
Sbjct: 8  GTVKW-----GYGFITPD---SGGEDLFVHQTAIVSEGFRSLREGEPVEF-FVETSDDGR 58

Query: 65 YSAENL 70
            A N+
Sbjct: 59 QKAVNV 64


>gi|162447160|ref|YP_001620292.1| DNA-binding cold shock protein [Acholeplasma laidlawii PG-8A]
 gi|161985267|gb|ABX80916.1| cold shock protein, DNA-binding [Acholeplasma laidlawii PG-8A]
          Length = 65

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW++  KGYGFIT     ++G DVF+H SA+ + G  +L EG  V ++    D
Sbjct: 2  KGTVKWFDAGKGYGFITA----DNGKDVFVHYSAIQTDGYKSLAEGDQVEFEIKSGD 54


>gi|299140055|ref|ZP_07033224.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX8]
 gi|298597901|gb|EFI54070.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX8]
          Length = 94

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          ++G++KW+N  KG+GF+    + +SG DVF+H SA+   G  +L EG  V +D +Q
Sbjct: 27 YKGTVKWFNNAKGFGFL----ARDSGPDVFVHYSAIQLDGYKSLKEGDEVEFDVIQ 78


>gi|296118095|ref|ZP_06836677.1| putative cold shock protein [Corynebacterium ammoniagenes DSM
          20306]
 gi|295968981|gb|EFG82224.1| putative cold shock protein [Corynebacterium ammoniagenes DSM
          20306]
          Length = 67

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI PE   +   DVF+H S +   G   L E Q V+++
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQQVSFE 51


>gi|317047537|ref|YP_004115185.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
          At-9b]
 gi|316949154|gb|ADU68629.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
          Length = 73

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI P G    GDD+F H S +   G   L  GQ V +D
Sbjct: 4  GTVKWFNNAKGFGFICPIG---GGDDIFAHYSTIQMEGYRTLKAGQQVQFD 51


>gi|163802257|ref|ZP_02196152.1| transcription elongation factor GreB [Vibrio sp. AND4]
 gi|159174062|gb|EDP58872.1| transcription elongation factor GreB [Vibrio sp. AND4]
          Length = 69

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI    S ESGDD+F+H  ++   G   L EG+ V++
Sbjct: 7  GTVKWFNEAKGFGFI----SQESGDDLFVHFRSILGDGFKKLVEGEKVSF 52


>gi|295105906|emb|CBL03449.1| cold-shock DNA-binding protein family [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 67

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 5/63 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N DKGYGFI+ +G    GDD+F+H S + + G   L E   V +     + NGK
Sbjct: 4  GTVKWFNADKGYGFISQDG----GDDLFVHFSEIQTDGFKTLEENAHVEFTVAVGN-NGK 58

Query: 65 YSA 67
            A
Sbjct: 59 SQA 61


>gi|294508943|ref|YP_003565832.1| cold-shock DNA-binding domain protein [Bacillus megaterium QM
          B1551]
 gi|294352247|gb|ADE72569.1| cold-shock DNA-binding domain protein [Bacillus megaterium QM
          B1551]
          Length = 69

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G+IKWYN +KGYGFIT E  TE    +F+   ++   G  +L EGQ V++D
Sbjct: 6  GTIKWYNFNKGYGFITREDETE----IFVSYRSIEGNGYADLREGQKVSFD 52


>gi|294139962|ref|YP_003555940.1| stress response protein CspD [Shewanella violacea DSS12]
 gi|293326431|dbj|BAJ01162.1| stress response protein CspD [Shewanella violacea DSS12]
          Length = 73

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G++KW+N  KG+GFI P      G+DVF H SA+   G   L  GQ V Y
Sbjct: 3  KGTVKWFNNTKGFGFICP---GAGGEDVFAHYSAIQMEGYRTLVAGQTVEY 50


>gi|192360604|ref|YP_001983030.1| cold-shock protein CspD [Cellvibrio japonicus Ueda107]
 gi|190686769|gb|ACE84447.1| cold-shock protein CspD [Cellvibrio japonicus Ueda107]
          Length = 125

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KGYGFI  +   E G+D+F H SA++  G   L  GQ V+++  + D
Sbjct: 41 IMPTGTVKWFNNAKGYGFILAD---EGGEDLFAHYSAISMDGYKTLKAGQQVSFEITRGD 97


>gi|331694459|ref|YP_004330698.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326949148|gb|AEA22845.1| cold-shock DNA-binding domain protein [Pseudonocardia
          dioxanivorans CB1190]
          Length = 67

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI    + ++G DVF+H SA+ + G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIA---TDDNGPDVFVHYSAIQTDGFRTLEENQRVDFEASQ 54


>gi|322515089|ref|ZP_08068096.1| CspA family cold shock transcriptional regulator [Actinobacillus
          ureae ATCC 25976]
 gi|322118895|gb|EFX91077.1| CspA family cold shock transcriptional regulator [Actinobacillus
          ureae ATCC 25976]
          Length = 69

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   + G D+F+H S +  +    L EG  V ++ VQ+   G 
Sbjct: 6  GIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFE-VQDSDRGP 61

Query: 65 YSAENLK 71
           SA N+K
Sbjct: 62 -SAVNVK 67


>gi|296113319|ref|YP_003627257.1| cold-shock DNA-binding protein family [Moraxella catarrhalis RH4]
 gi|295921013|gb|ADG61364.1| cold-shock DNA-binding protein family [Moraxella catarrhalis RH4]
          Length = 91

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G +KW+N  KG+GFI      E+G+DVF+H  A+   G  +L EGQ V +     D  
Sbjct: 27 EQGVVKWFNDAKGFGFI----QRETGEDVFVHFRAIQGEGYRSLKEGQAVEFVVTTGD-K 81

Query: 63 GKYSAENLKL 72
          G  + E  KL
Sbjct: 82 GLQAEEVTKL 91


>gi|254428424|ref|ZP_05042131.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
 gi|196194593|gb|EDX89552.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
          Length = 62

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +KW+N  KG+GFI+ +   + G DVF+H SA+  +G   L EGQ V+++  Q
Sbjct: 1  MKWFNESKGFGFISQD---DGGADVFVHFSAITGSGFKTLAEGQKVSFEIQQ 49


>gi|89897618|ref|YP_521105.1| hypothetical protein DSY4872 [Desulfitobacterium hafniense Y51]
 gi|219670745|ref|YP_002461180.1| cold-shock DNA-binding protein [Desulfitobacterium hafniense
          DCB-2]
 gi|89337066|dbj|BAE86661.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219541005|gb|ACL22744.1| cold-shock DNA-binding domain protein [Desulfitobacterium
          hafniense DCB-2]
          Length = 65

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KGYGFI  EG  + G D+F+H S++   G   L EGQ V +D VQ
Sbjct: 3  GKVKWFSKQKGYGFI--EG--DHGQDIFVHFSSIMGDGFRTLEEGQGVEFDIVQ 52


>gi|95929679|ref|ZP_01312421.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
 gi|95134376|gb|EAT16033.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
          Length = 66

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GFI      ++G DVF+H SA+   G  +L EG  V++D V +   G 
Sbjct: 4  GSVKWFNDSKGFGFI----EQDNGPDVFVHFSAIQGDGFKSLAEGDRVSFD-VTDGQKGP 58

Query: 65 YSAENLKL 72
           SA   ++
Sbjct: 59 QSANVRRI 66


>gi|55820886|ref|YP_139328.1| cold shock protein B [Streptococcus thermophilus LMG 18311]
 gi|55822803|ref|YP_141244.1| cold shock protein B [Streptococcus thermophilus CNRZ1066]
 gi|55736871|gb|AAV60513.1| cold shock protein B [Streptococcus thermophilus LMG 18311]
 gi|55738788|gb|AAV62429.1| cold shock protein B [Streptococcus thermophilus CNRZ1066]
          Length = 88

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++  G++KW+N  KG+GFIT    +E G D+F H S++ S G  +L E Q V +D
Sbjct: 22 IMANGTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFD 72


>gi|254492515|ref|ZP_05105687.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
          thiooxidans DMS010]
 gi|224462407|gb|EEF78684.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
          thiooxydans DMS010]
          Length = 68

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      ESG DVF H S +   G   L EGQ V +   Q  A G 
Sbjct: 6  GTVKWFNEAKGFGFI----EQESGPDVFAHFSQIKGDGFRTLNEGQRVEFTVTQG-AKGP 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 -QAENI 65


>gi|53804855|ref|YP_113293.1| cold shock protein [Methylococcus capsulatus str. Bath]
 gi|53758616|gb|AAU92907.1| cold shock protein [Methylococcus capsulatus str. Bath]
          Length = 69

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           +G++KW+N  KG+GFI      E+G D+F+H  ++   G   L EGQ V++  V
Sbjct: 5  QQGTVKWFNESKGFGFI----QRENGSDLFVHFRSIQGQGFKTLKEGQRVSFTEV 55


>gi|330819166|ref|YP_004348028.1| cold-shock DNA-binding domain protein [Burkholderia gladioli
          BSR3]
 gi|327371161|gb|AEA62516.1| cold-shock DNA-binding domain protein [Burkholderia gladioli
          BSR3]
          Length = 67

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFITP+     GDD+F H S V+  G   L E Q V+++
Sbjct: 4  GIVKWFNDSKGFGFITPD---NGGDDLFAHFSEVSGDGFKTLAENQKVSFE 51


>gi|317053579|ref|YP_004118713.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
          At-9b]
 gi|316952684|gb|ADU72157.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
          Length = 70

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG GFITPE  ++   DVF+H SA+      +L EGQ V +  ++N   G 
Sbjct: 7  GTVKWFNAEKGLGFITPENGSK---DVFVHFSAIQGNDYRSLDEGQRVEF-ILENGQKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 AAA 65


>gi|330812228|ref|YP_004356690.1| transcriptional regulator, Csd family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327380336|gb|AEA71686.1| putative transcriptional regulator, Csd family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 70

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 4/65 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFIT     + G+++F+H SA+A  G   L + Q V+++ V+    G
Sbjct: 6  KGTVKWFNDAKGYGFIT---CGKGGEELFVHYSAIAGEGYKTLKQRQTVSFE-VEKGGKG 61

Query: 64 KYSAE 68
            +A+
Sbjct: 62 MQAAK 66


>gi|83746258|ref|ZP_00943311.1| Cold shock protein [Ralstonia solanacearum UW551]
 gi|207742557|ref|YP_002258949.1| cold shock-like protein cspd [Ralstonia solanacearum IPO1609]
 gi|83727008|gb|EAP74133.1| Cold shock protein [Ralstonia solanacearum UW551]
 gi|206593950|emb|CAQ60877.1| cold shock-like protein cspd [Ralstonia solanacearum IPO1609]
          Length = 67

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI+ +   E G+++F H SA+   G   L EGQ V ++  Q
Sbjct: 4  GTVKWFNDAKGFGFISLD---EGGEELFAHFSAIQMNGFKTLKEGQRVVFEVTQ 54


>gi|330810451|ref|YP_004354913.1| transcription factor, Csd family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327378559|gb|AEA69909.1| putative Transcription factor, Csd family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 89

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI   G  +  +D+F H SA+   G   L  GQ VT+D +Q
Sbjct: 8  GKVKWFNNAKGYGFIIAAGRDD--EDLFAHYSAINMEGYKTLKAGQPVTFDVIQ 59


>gi|90413211|ref|ZP_01221206.1| putative cold shock-like protein CspD [Photobacterium profundum
          3TCK]
 gi|90325763|gb|EAS42221.1| putative cold shock-like protein CspD [Photobacterium profundum
          3TCK]
          Length = 73

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE   E   D+F H S +   G   L  GQ V Y+ +Q    G 
Sbjct: 4  GTVKWFNNAKGFGFICPE---EGEGDIFAHYSTIQMDGYRTLKAGQQVNYE-IQTGPKGH 59

Query: 65 YSAENLKL 72
          +++E + +
Sbjct: 60 HASEIIPV 67


>gi|88857117|ref|ZP_01131760.1| Cold shock protein [Pseudoalteromonas tunicata D2]
 gi|88820314|gb|EAR30126.1| Cold shock protein [Pseudoalteromonas tunicata D2]
          Length = 69

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GS+KW+N  KG+GFI       SG DVF H SA++  G   L EGQ V +   Q
Sbjct: 7  GSVKWFNEAKGFGFI----EQASGPDVFAHFSAISGDGFKTLAEGQRVQFTVSQ 56


>gi|297568667|ref|YP_003690011.1| cold-shock DNA-binding domain protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296924582|gb|ADH85392.1| cold-shock DNA-binding domain protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 66

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           G++KW+N  KG+GFI    + +SG DVF+H +A+   G  +L EG  V ++ V
Sbjct: 3  EGTVKWFNDAKGFGFI----AQDSGSDVFVHHTAILGQGFKSLQEGARVEFEIV 52


>gi|319935036|ref|ZP_08009479.1| cold shock protein cspC [Coprobacillus sp. 29_1]
 gi|319810054|gb|EFW06423.1| cold shock protein cspC [Coprobacillus sp. 29_1]
          Length = 65

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +KW+N +KG+GFI        G DVF+H S +   G  +L EG++V ++  Q+D
Sbjct: 2  QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQIVQDGYKSLNEGEVVEFELYQSD 54


>gi|317500145|ref|ZP_07958378.1| cold shock protein CspA [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087628|ref|ZP_08336556.1| cold shock-like protein cspC [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|316898434|gb|EFV20472.1| cold shock protein CspA [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330399807|gb|EGG79467.1| cold shock-like protein cspC [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 65

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI    S   G+D+F+H S +   G   L EGQ V ++ V   A G 
Sbjct: 3  GTVKWFNNQKGYGFI----SDSEGNDIFVHYSGLVMDGFKTLEEGQAVEFE-VTEGAKGP 57

Query: 65 YSAENLKL 72
           +   +KL
Sbjct: 58 QATNVVKL 65


>gi|320108152|ref|YP_004183742.1| cold-shock DNA-binding domain-containing protein [Terriglobus
          saanensis SP1PR4]
 gi|319926673|gb|ADV83748.1| cold-shock DNA-binding domain protein [Terriglobus saanensis
          SP1PR4]
          Length = 71

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++GS+KW+N  KG+GF+      E+G DVF+H S++   G  +L EG  V +D +Q +
Sbjct: 4  YKGSVKWFNNAKGFGFL----GRENGPDVFVHYSSIQLDGYKSLKEGDEVEFDVIQGE 57


>gi|330718236|ref|ZP_08312836.1| cold-shock DNA-binding protein family protein [Leuconostoc fallax
          KCTC 3537]
          Length = 74

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +K +  D+GYG+ITP+   E GDD+F+H + +   G  +L +G+ VTY  VQ
Sbjct: 4  GKVKIWQQDRGYGYITPD---EGGDDIFVHFNGIDMPGFKSLHQGEAVTYVLVQ 54


>gi|291550100|emb|CBL26362.1| cold-shock DNA-binding protein family [Ruminococcus torques
          L2-14]
          Length = 65

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI    S   G+D+F+H S +   G  +L EGQ V ++ V   A G 
Sbjct: 3  GTVKWFNNQKGYGFI----SDAEGNDIFVHYSGLVMDGFKSLEEGQAVEFE-VTEGAKGP 57

Query: 65 YSAENLKL 72
           +   +KL
Sbjct: 58 QAVNVVKL 65


>gi|257057404|ref|YP_003135236.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
 gi|256587276|gb|ACU98409.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
          Length = 68

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI     +  G DVF+H SA+ + G   L EG  V ++ +    +G+
Sbjct: 4  GTVKWFNAEKGYGFI----ESPDGPDVFVHYSAIQAEGFRTLDEGDRVEFE-ITAGRDGR 58

Query: 65 YSAENLK 71
            A +++
Sbjct: 59 SQAADVR 65


>gi|254520602|ref|ZP_05132658.1| cold shock protein [Clostridium sp. 7_2_43FAA]
 gi|226914351|gb|EEH99552.1| cold shock protein [Clostridium sp. 7_2_43FAA]
          Length = 69

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 5/57 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          G++KWY+ +KGYGFI    S   G+DVF+H S +   G   +L EG+ +T+D  +N+
Sbjct: 6  GTVKWYSMEKGYGFI----SCNEGNDVFVHHSQIKEKGPEKDLHEGENITFDIQENE 58


>gi|148974863|ref|ZP_01811843.1| cold shock DNA-binding domain protein [Vibrionales bacterium
          SWAT-3]
 gi|145965372|gb|EDK30621.1| cold shock DNA-binding domain protein [Vibrionales bacterium
          SWAT-3]
          Length = 69

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V  ++V +     
Sbjct: 7  GTVKWFNETKGFGFI----QQENGPDVFAHFSAITGEGFKTLAEGQKV--EFVVSQGQKG 60

Query: 65 YSAENLKLV 73
            A+++K++
Sbjct: 61 PQADSIKVL 69


>gi|149927840|ref|ZP_01916091.1| cold-shock DNA-binding domain family protein [Limnobacter sp.
          MED105]
 gi|149823462|gb|EDM82693.1| cold-shock DNA-binding domain family protein [Limnobacter sp.
          MED105]
          Length = 69

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +K++N  KG+GFI    S E+G DVF+H SA+   G   L EGQ V++   Q
Sbjct: 7  GQVKFFNESKGFGFI----SRENGPDVFVHFSAIQGNGFKTLAEGQKVSFTVTQ 56


>gi|153814427|ref|ZP_01967095.1| hypothetical protein RUMTOR_00637 [Ruminococcus torques ATCC
          27756]
 gi|145848823|gb|EDK25741.1| hypothetical protein RUMTOR_00637 [Ruminococcus torques ATCC
          27756]
          Length = 70

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI    S   G+D+F+H S +   G   L EGQ V ++ V   A G 
Sbjct: 8  GTVKWFNNQKGYGFI----SDSEGNDIFVHYSGLVMDGFKTLEEGQAVEFE-VTEGAKGP 62

Query: 65 YSAENLKL 72
           +   +KL
Sbjct: 63 QATNVVKL 70


>gi|108757963|ref|YP_633461.1| cold-shock protein CspB [Myxococcus xanthus DK 1622]
 gi|4193392|gb|AAD10034.1| CspB [Myxococcus xanthus]
 gi|108461843|gb|ABF87028.1| cold-shock protein CspB [Myxococcus xanthus DK 1622]
          Length = 66

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI    + ++G+DVF H +A+   G   L EGQ V ++  +      
Sbjct: 4  GTVKWFNDAKGFGFI----AQDNGEDVFCHHTAINMDGFRTLQEGQQVEFEVTRGPKG-- 57

Query: 65 YSAENLKLV 73
            A+N++ V
Sbjct: 58 LQAQNVRAV 66


>gi|217976725|ref|YP_002360872.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2]
 gi|217502101|gb|ACK49510.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2]
          Length = 217

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           G++KW++ +KG+GF+    S + G DVF+H S +  +G+ NL EGQ V+   V
Sbjct: 154 GTVKWFDDNKGFGFVQ---SNDGGKDVFVHISILGPSGVQNLAEGQAVSMRVV 203


>gi|169796394|ref|YP_001714187.1| cold shock-like protein [Acinetobacter baumannii AYE]
 gi|213156868|ref|YP_002318913.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          AB0057]
 gi|215483856|ref|YP_002326081.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
 gi|169149321|emb|CAM87205.1| cold shock-like protein [Acinetobacter baumannii AYE]
 gi|213056028|gb|ACJ40930.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          AB0057]
 gi|213988514|gb|ACJ58813.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
          Length = 69

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      ++G DVF H   ++S+G   L EGQ V+++  Q
Sbjct: 7  GTVKWFNETKGFGFI----QQDTGPDVFAHFKEISSSGFKTLYEGQRVSFNIAQ 56


>gi|157158051|ref|YP_001462848.1| cold shock DNA-binding protein [Escherichia coli E24377A]
 gi|331668012|ref|ZP_08368867.1| conserved domain protein [Escherichia coli TA271]
 gi|331673146|ref|ZP_08373914.1| conserved domain protein [Escherichia coli TA280]
 gi|157080081|gb|ABV19789.1| cold shock DNA-binding protein [Escherichia coli E24377A]
 gi|222033318|emb|CAP76058.1| Cold shock-like protein cspB [Escherichia coli LF82]
 gi|331064754|gb|EGI36658.1| conserved domain protein [Escherichia coli TA271]
 gi|331069344|gb|EGI40731.1| conserved domain protein [Escherichia coli TA280]
          Length = 71

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N DKG+GFI+P    +   DVF+H SA+ +     L EGQ VT+
Sbjct: 7  GLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTF 53


>gi|117929224|ref|YP_873775.1| cold-shock DNA-binding protein family protein [Acidothermus
          cellulolyticus 11B]
 gi|117649687|gb|ABK53789.1| cold-shock DNA-binding protein family [Acidothermus
          cellulolyticus 11B]
          Length = 65

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N +KG+GFI  +G    G DVF+H SA+   G   L E Q V ++  Q
Sbjct: 2  QGVVKWFNAEKGFGFIAVDG----GSDVFVHYSAIQGEGYRTLAENQRVDFEITQ 52


>gi|296113754|ref|YP_003627692.1| cold shock-like protein [Moraxella catarrhalis RH4]
 gi|295921448|gb|ADG61799.1| cold shock-like protein [Moraxella catarrhalis RH4]
 gi|326562103|gb|EGE12431.1| cold shock-like protein [Moraxella catarrhalis 7169]
 gi|326564532|gb|EGE14758.1| cold shock-like protein [Moraxella catarrhalis 46P47B1]
 gi|326565716|gb|EGE15879.1| cold shock-like protein [Moraxella catarrhalis 12P80B1]
 gi|326566284|gb|EGE16436.1| cold shock-like protein [Moraxella catarrhalis 103P14B1]
 gi|326567064|gb|EGE17186.1| cold shock-like protein [Moraxella catarrhalis BC1]
 gi|326568328|gb|EGE18408.1| cold shock-like protein [Moraxella catarrhalis BC7]
 gi|326572229|gb|EGE22224.1| cold shock-like protein [Moraxella catarrhalis BC8]
 gi|326574571|gb|EGE24511.1| cold shock-like protein [Moraxella catarrhalis O35E]
 gi|326574827|gb|EGE24757.1| cold shock-like protein [Moraxella catarrhalis 101P30B1]
 gi|326576151|gb|EGE26066.1| cold shock-like protein [Moraxella catarrhalis CO72]
          Length = 70

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI  +     G DVF H SA+  +G   L EGQ V +
Sbjct: 7  GTVKWFNESKGFGFIAQD---NGGQDVFAHYSAITGSGFKTLAEGQKVAF 53


>gi|238920383|ref|YP_002933898.1| cold shock domain protein CspD, [Edwardsiella ictaluri 93-146]
 gi|238869952|gb|ACR69663.1| cold shock domain protein CspD, putative [Edwardsiella ictaluri
          93-146]
          Length = 73

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N  KG+GFI P      GDD+F H +A+   G   L  GQ V +D
Sbjct: 1  METGTVKWFNNAKGFGFICP---ASGGDDIFAHYTAIQMEGYRTLKAGQQVQFD 51


>gi|15800910|ref|NP_286926.1| cold shock protein CspG [Escherichia coli O157:H7 EDL933]
 gi|25296143|pir||E85634 homolog of Salmonella cold shock protein [imported] - Escherichia
          coli (strain O157:H7, substrain EDL933)
 gi|12514257|gb|AAG55537.1|AE005293_1 homolog of Salmonella cold shock protein [Escherichia coli
          O157:H7 str. EDL933]
          Length = 70

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFITP+  ++   DVF+H +A+ S     L E Q V +   Q
Sbjct: 7  GLVKWFNADKGFGFITPDDGSK---DVFVHFTAIQSNEFRTLNENQKVEFSIEQ 57


>gi|227202808|dbj|BAH56877.1| AT4G38680 [Arabidopsis thaliana]
          Length = 204

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 33/44 (75%), Gaps = 3/44 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
           +GS+KW++  KG+GFITP+   + GDD+F+H+S++ S G  +L
Sbjct: 11 RKGSVKWFDTQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSL 51


>gi|163816662|ref|ZP_02208025.1| hypothetical protein COPEUT_02852 [Coprococcus eutactus ATCC
          27759]
 gi|158447919|gb|EDP24914.1| hypothetical protein COPEUT_02852 [Coprococcus eutactus ATCC
          27759]
          Length = 66

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KGYGFI      E G DVF+H SA+   G   L EG  V Y+ V  +
Sbjct: 4  GKVKWFNAKKGYGFICD----EDGTDVFVHFSALNMEGFKALEEGDTVEYEVVDGE 55


>gi|326560305|gb|EGE10693.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          7169]
 gi|326562975|gb|EGE13254.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          46P47B1]
 gi|326563611|gb|EGE13863.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          103P14B1]
 gi|326565318|gb|EGE15498.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          12P80B1]
 gi|326566377|gb|EGE16527.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC1]
 gi|326570186|gb|EGE20231.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC8]
 gi|326570924|gb|EGE20948.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC7]
 gi|326573218|gb|EGE23186.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          101P30B1]
 gi|326575880|gb|EGE25803.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          CO72]
 gi|326576345|gb|EGE26254.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          O35E]
          Length = 68

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G +KW+N  KG+GFI      E+G+DVF+H  A+   G  +L EGQ V +     D  
Sbjct: 4  EQGVVKWFNDAKGFGFI----QRETGEDVFVHFRAIQGEGYRSLKEGQAVEFVVTTGD-K 58

Query: 63 GKYSAENLKL 72
          G  + E  KL
Sbjct: 59 GLQAEEVTKL 68


>gi|25029285|ref|NP_739339.1| hypothetical protein CE2729 [Corynebacterium efficiens YS-314]
 gi|23494573|dbj|BAC19539.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 251

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           +G++KW+N +KG+GFI P   ++   DVF+H S +   G  NL E Q V ++
Sbjct: 187 QGTVKWFNAEKGFGFIAP---SDGSADVFVHYSEIQGNGFRNLEENQQVEFE 235


>gi|114321683|ref|YP_743366.1| cold-shock DNA-binding protein family protein [Alkalilimnicola
          ehrlichii MLHE-1]
 gi|114228077|gb|ABI57876.1| cold-shock DNA-binding protein family [Alkalilimnicola ehrlichii
          MLHE-1]
          Length = 69

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW++  KG+GFI      E G+DVF+H  A+   G  +L EGQ V ++ V+
Sbjct: 7  GTVKWFDNAKGFGFI----QREQGEDVFVHFRAIRGEGFRSLDEGQQVEFNVVR 56


>gi|226357786|ref|YP_002787526.1| cold shock protein [Deinococcus deserti VCD115]
 gi|226320029|gb|ACO48022.1| putative cold shock protein [Deinococcus deserti VCD115]
          Length = 87

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI     T  G DVF H SA++ +G   L EG  V ++  +      
Sbjct: 4  GKVKWFNAEKGFGFI----ETPGGPDVFAHFSAISGSGFKKLNEGDEVEFELEEGQRGKG 59

Query: 65 YSAENL 70
            A+N+
Sbjct: 60 PQAKNI 65


>gi|226358070|ref|YP_002787809.1| Cold shock protein [Deinococcus deserti VCD115]
 gi|226319713|gb|ACO47707.1| putative Cold shock protein [Deinococcus deserti VCD115]
          Length = 87

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI     T  G DVF H SA++ +G   L EG  V ++  +      
Sbjct: 4  GKVKWFNAEKGFGFI----ETPGGPDVFAHFSAISGSGFKKLNEGDEVEFELEEGQRGKG 59

Query: 65 YSAENL 70
            A+N+
Sbjct: 60 PQAKNI 65


>gi|15830399|ref|NP_309172.1| cold shock protein CspG [Escherichia coli O157:H7 str. Sakai]
 gi|16128956|ref|NP_415510.1| cold shock protein homolog, cold-inducible [Escherichia coli str.
          K-12 substr. MG1655]
 gi|26247008|ref|NP_753048.1| cold shock protein CspG [Escherichia coli CFT073]
 gi|74311547|ref|YP_309966.1| cold shock protein CspG [Shigella sonnei Ss046]
 gi|82544687|ref|YP_408634.1| cold shock protein CspG [Shigella boydii Sb227]
 gi|89107840|ref|AP_001620.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
          substr. W3110]
 gi|91210080|ref|YP_540066.1| cold shock protein CspG [Escherichia coli UTI89]
 gi|110641171|ref|YP_668901.1| cold shock protein CspG [Escherichia coli 536]
 gi|157157933|ref|YP_001462221.1| cold shock protein CspG [Escherichia coli E24377A]
 gi|157160508|ref|YP_001457826.1| cold shock protein CspG [Escherichia coli HS]
 gi|168747396|ref|ZP_02772418.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|168754310|ref|ZP_02779317.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|168763226|ref|ZP_02788233.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|168767487|ref|ZP_02792494.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|168773676|ref|ZP_02798683.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|168781006|ref|ZP_02806013.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|168787495|ref|ZP_02812502.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC869]
 gi|168800619|ref|ZP_02825626.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC508]
 gi|170020611|ref|YP_001725565.1| cold shock protein CspG [Escherichia coli ATCC 8739]
 gi|170080648|ref|YP_001729968.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
          substr. DH10B]
 gi|170683191|ref|YP_001744186.1| cold shock protein CspG [Escherichia coli SMS-3-5]
 gi|187730656|ref|YP_001880813.1| cold shock protein CspG [Shigella boydii CDC 3083-94]
 gi|188493174|ref|ZP_03000444.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|191166565|ref|ZP_03028394.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|191172438|ref|ZP_03033979.1| cold shock DNA-binding protein [Escherichia coli F11]
 gi|193066327|ref|ZP_03047377.1| cold shock DNA-binding protein [Escherichia coli E22]
 gi|193070805|ref|ZP_03051739.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194429832|ref|ZP_03062345.1| cold shock DNA-binding protein [Escherichia coli B171]
 gi|194432411|ref|ZP_03064698.1| cold shock DNA-binding protein [Shigella dysenteriae 1012]
 gi|194438072|ref|ZP_03070165.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|195935247|ref|ZP_03080629.1| cold shock protein CspG [Escherichia coli O157:H7 str. EC4024]
 gi|208806958|ref|ZP_03249295.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208814978|ref|ZP_03256157.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208822652|ref|ZP_03262971.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209398274|ref|YP_002269715.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4115]
 gi|209918242|ref|YP_002292326.1| cold shock protein CspG [Escherichia coli SE11]
 gi|215486106|ref|YP_002328537.1| cold shock protein CspG [Escherichia coli O127:H6 str. E2348/69]
 gi|217324361|ref|ZP_03440445.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          TW14588]
 gi|218553577|ref|YP_002386490.1| cold shock protein CspG [Escherichia coli IAI1]
 gi|218557881|ref|YP_002390794.1| cold shock protein CspG [Escherichia coli S88]
 gi|218688878|ref|YP_002397090.1| cold shock protein CspG [Escherichia coli ED1a]
 gi|218694525|ref|YP_002402192.1| cold shock protein CspG [Escherichia coli 55989]
 gi|218700498|ref|YP_002408127.1| cold shock protein CspG [Escherichia coli IAI39]
 gi|218704406|ref|YP_002411925.1| cold shock protein CspG [Escherichia coli UMN026]
 gi|227884058|ref|ZP_04001863.1| CspA family cold shock transcriptional regulator [Escherichia
          coli 83972]
 gi|237707032|ref|ZP_04537513.1| cold shock protein CspG [Escherichia sp. 3_2_53FAA]
 gi|238900249|ref|YP_002926045.1| DNA-binding transcriptional regulator [Escherichia coli BW2952]
 gi|253773981|ref|YP_003036812.1| cold shock protein CspG [Escherichia coli 'BL21-Gold(DE3)pLysS
          AG']
 gi|254161102|ref|YP_003044210.1| cold shock protein CspG [Escherichia coli B str. REL606]
 gi|254792247|ref|YP_003077084.1| cold shock protein CspG [Escherichia coli O157:H7 str. TW14359]
 gi|256018751|ref|ZP_05432616.1| cold shock protein CspG [Shigella sp. D9]
 gi|256023309|ref|ZP_05437174.1| cold shock protein CspG [Escherichia sp. 4_1_40B]
 gi|260843237|ref|YP_003221015.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O103:H2 str. 12009]
 gi|260854693|ref|YP_003228584.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O26:H11 str. 11368]
 gi|260867198|ref|YP_003233600.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O111:H- str. 11128]
 gi|261227159|ref|ZP_05941440.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7
          str. FRIK2000]
 gi|261255727|ref|ZP_05948260.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O157:H7 str. FRIK966]
 gi|291281988|ref|YP_003498806.1| Cold shock-like protein cspG [Escherichia coli O55:H7 str.
          CB9615]
 gi|293404283|ref|ZP_06648277.1| cold shock-like protein cspG [Escherichia coli FVEC1412]
 gi|293409367|ref|ZP_06652943.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293414265|ref|ZP_06656914.1| cold shock protein [Escherichia coli B185]
 gi|293433284|ref|ZP_06661712.1| cold shock-like protein CspC [Escherichia coli B088]
 gi|297519754|ref|ZP_06938140.1| cold shock protein CspG [Escherichia coli OP50]
 gi|298380066|ref|ZP_06989671.1| cold shock-like protein cspG [Escherichia coli FVEC1302]
 gi|300819431|ref|ZP_07099628.1| transcriptional repressor activity CueR [Escherichia coli MS
          107-1]
 gi|300823951|ref|ZP_07104074.1| transcriptional repressor activity CueR [Escherichia coli MS
          119-7]
 gi|300896362|ref|ZP_07114904.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300902844|ref|ZP_07120792.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300920966|ref|ZP_07137356.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300925325|ref|ZP_07141215.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|300929241|ref|ZP_07144720.1| transcriptional repressor activity CueR [Escherichia coli MS
          187-1]
 gi|300937663|ref|ZP_07152469.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|300949634|ref|ZP_07163620.1| transcriptional repressor activity CueR [Escherichia coli MS
          116-1]
 gi|300957866|ref|ZP_07170042.1| transcriptional repressor activity CueR [Escherichia coli MS
          175-1]
 gi|300978251|ref|ZP_07174199.1| transcriptional repressor activity CueR [Escherichia coli MS
          45-1]
 gi|300982793|ref|ZP_07176303.1| transcriptional repressor activity CueR [Escherichia coli MS
          200-1]
 gi|301022616|ref|ZP_07186487.1| transcriptional repressor activity CueR [Escherichia coli MS
          196-1]
 gi|301023111|ref|ZP_07186918.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|301047756|ref|ZP_07194812.1| transcriptional repressor activity CueR [Escherichia coli MS
          185-1]
 gi|301302393|ref|ZP_07208524.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|301327177|ref|ZP_07220443.1| transcriptional repressor activity CueR [Escherichia coli MS
          78-1]
 gi|301646375|ref|ZP_07246260.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|306812571|ref|ZP_07446764.1| cold shock protein CspG [Escherichia coli NC101]
 gi|307137622|ref|ZP_07496978.1| cold shock protein CspG [Escherichia coli H736]
 gi|307311625|ref|ZP_07591265.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|309795021|ref|ZP_07689441.1| transcriptional repressor activity CueR [Escherichia coli MS
          145-7]
 gi|312968952|ref|ZP_07783159.1| cold shock-like protein cspG [Escherichia coli 2362-75]
 gi|331641521|ref|ZP_08342656.1| conserved domain protein [Escherichia coli H736]
 gi|331646244|ref|ZP_08347347.1| conserved domain protein [Escherichia coli M605]
 gi|331652014|ref|ZP_08353033.1| conserved domain protein [Escherichia coli M718]
 gi|331657050|ref|ZP_08358012.1| conserved domain protein [Escherichia coli TA206]
 gi|331662397|ref|ZP_08363320.1| conserved domain protein [Escherichia coli TA143]
 gi|331667381|ref|ZP_08368245.1| conserved domain protein [Escherichia coli TA271]
 gi|331672524|ref|ZP_08373313.1| conserved domain protein [Escherichia coli TA280]
 gi|331676780|ref|ZP_08377476.1| conserved domain protein [Escherichia coli H591]
 gi|331682495|ref|ZP_08383114.1| conserved domain protein [Escherichia coli H299]
 gi|332279828|ref|ZP_08392241.1| cold shock protein CspG [Shigella sp. D9]
 gi|71154162|sp|P0A980|CSPG_ECO57 RecName: Full=Cold shock-like protein CspG; Short=CPS-G
 gi|71154163|sp|P0A979|CSPG_ECOL6 RecName: Full=Cold shock-like protein CspG; Short=CPS-G
 gi|71154164|sp|P0A978|CSPG_ECOLI RecName: Full=Cold shock-like protein CspG; Short=CPS-G
 gi|71154165|sp|P0A981|CSPG_SHIFL RecName: Full=Cold shock-like protein CspG; Short=CPS-G
 gi|26107408|gb|AAN79591.1|AE016758_195 Cold shock-like protein cspG [Escherichia coli CFT073]
 gi|1468921|dbj|BAA09669.1| cold shock potein CspG [Escherichia coli K-12]
 gi|2226344|gb|AAB61741.1| CspG [Escherichia coli str. K-12 substr. W3110]
 gi|2367114|gb|AAC74075.1| cold shock protein homolog, cold-inducible [Escherichia coli str.
          K-12 substr. MG1655]
 gi|4062549|dbj|BAA35756.1| DNA-binding transcriptional regulator [Escherichia coli str. K12
          substr. W3110]
 gi|13360605|dbj|BAB34568.1| cold shock-like protein CspG [Escherichia coli O157:H7 str.
          Sakai]
 gi|73855024|gb|AAZ87731.1| cold shock protein-like protein [Shigella sonnei Ss046]
 gi|81246098|gb|ABB66806.1| CspG [Shigella boydii Sb227]
 gi|91071654|gb|ABE06535.1| cold shock-like protein G [Escherichia coli UTI89]
 gi|110342763|gb|ABG69000.1| cold shock-like protein CspG [Escherichia coli 536]
 gi|157066188|gb|ABV05443.1| cold shock DNA-binding protein [Escherichia coli HS]
 gi|157079963|gb|ABV19671.1| cold shock DNA-binding protein [Escherichia coli E24377A]
 gi|169755539|gb|ACA78238.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|169888483|gb|ACB02190.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
          substr. DH10B]
 gi|170520909|gb|ACB19087.1| cold shock DNA-binding protein [Escherichia coli SMS-3-5]
 gi|187427648|gb|ACD06922.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94]
 gi|187770523|gb|EDU34367.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|188018100|gb|EDU56222.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|188488373|gb|EDU63476.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|189001168|gb|EDU70154.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189358364|gb|EDU76783.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189363259|gb|EDU81678.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189366600|gb|EDU85016.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|189372631|gb|EDU91047.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC869]
 gi|189377110|gb|EDU95526.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC508]
 gi|190903370|gb|EDV63090.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|190907322|gb|EDV66920.1| cold shock DNA-binding protein [Escherichia coli F11]
 gi|192926034|gb|EDV80678.1| cold shock DNA-binding protein [Escherichia coli E22]
 gi|192955916|gb|EDV86385.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194412114|gb|EDX28423.1| cold shock DNA-binding protein [Escherichia coli B171]
 gi|194419298|gb|EDX35380.1| cold shock DNA-binding protein [Shigella dysenteriae 1012]
 gi|194423008|gb|EDX39002.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|208726759|gb|EDZ76360.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208731626|gb|EDZ80314.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208738137|gb|EDZ85820.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209159674|gb|ACI37107.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4115]
 gi|209774128|gb|ACI85376.1| cold shock-like protein CspG [Escherichia coli]
 gi|209774130|gb|ACI85377.1| cold shock-like protein CspG [Escherichia coli]
 gi|209774132|gb|ACI85378.1| cold shock-like protein CspG [Escherichia coli]
 gi|209774134|gb|ACI85379.1| cold shock-like protein CspG [Escherichia coli]
 gi|209774136|gb|ACI85380.1| cold shock-like protein CspG [Escherichia coli]
 gi|209911501|dbj|BAG76575.1| cold shock-like protein [Escherichia coli SE11]
 gi|215264178|emb|CAS08522.1| DNA-binding transcriptional regulator [Escherichia coli O127:H6
          str. E2348/69]
 gi|217320582|gb|EEC29006.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          TW14588]
 gi|218351257|emb|CAU96961.1| DNA-binding transcriptional regulator [Escherichia coli 55989]
 gi|218360345|emb|CAQ97895.1| DNA-binding transcriptional regulator [Escherichia coli IAI1]
 gi|218364650|emb|CAR02336.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|218370484|emb|CAR18291.1| DNA-binding transcriptional regulator [Escherichia coli IAI39]
 gi|218426442|emb|CAR07268.1| DNA-binding transcriptional regulator [Escherichia coli ED1a]
 gi|218431503|emb|CAR12381.1| DNA-binding transcriptional regulator [Escherichia coli UMN026]
 gi|222032705|emb|CAP75444.1| Cold shock-like protein cspG [Escherichia coli LF82]
 gi|226898242|gb|EEH84501.1| cold shock protein CspG [Escherichia sp. 3_2_53FAA]
 gi|227838810|gb|EEJ49276.1| CspA family cold shock transcriptional regulator [Escherichia
          coli 83972]
 gi|238860954|gb|ACR62952.1| DNA-binding transcriptional regulator [Escherichia coli BW2952]
 gi|242376803|emb|CAQ31516.1| cold shock protein CspG [Escherichia coli BL21(DE3)]
 gi|253325025|gb|ACT29627.1| cold-shock DNA-binding domain protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253973003|gb|ACT38674.1| DNA-binding transcriptional regulator [Escherichia coli B str.
          REL606]
 gi|253977217|gb|ACT42887.1| DNA-binding transcriptional regulator [Escherichia coli
          BL21(DE3)]
 gi|254591647|gb|ACT71008.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7
          str. TW14359]
 gi|257753342|dbj|BAI24844.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O26:H11 str. 11368]
 gi|257758384|dbj|BAI29881.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O103:H2 str. 12009]
 gi|257763554|dbj|BAI35049.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O111:H- str. 11128]
 gi|260449865|gb|ACX40287.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|281178106|dbj|BAI54436.1| cold shock-like protein [Escherichia coli SE15]
 gi|284920825|emb|CBG33888.1| cold shock-like protein [Escherichia coli 042]
 gi|290761861|gb|ADD55822.1| Cold shock-like protein cspG [Escherichia coli O55:H7 str.
          CB9615]
 gi|291324103|gb|EFE63525.1| cold shock-like protein CspC [Escherichia coli B088]
 gi|291428869|gb|EFF01894.1| cold shock-like protein cspG [Escherichia coli FVEC1412]
 gi|291434323|gb|EFF07296.1| cold shock protein [Escherichia coli B185]
 gi|291469835|gb|EFF12319.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294493742|gb|ADE92498.1| cold shock DNA-binding protein [Escherichia coli IHE3034]
 gi|298279764|gb|EFI21272.1| cold shock-like protein cspG [Escherichia coli FVEC1302]
 gi|299881188|gb|EFI89399.1| transcriptional repressor activity CueR [Escherichia coli MS
          196-1]
 gi|300300365|gb|EFJ56750.1| transcriptional repressor activity CueR [Escherichia coli MS
          185-1]
 gi|300307058|gb|EFJ61578.1| transcriptional repressor activity CueR [Escherichia coli MS
          200-1]
 gi|300315437|gb|EFJ65221.1| transcriptional repressor activity CueR [Escherichia coli MS
          175-1]
 gi|300359773|gb|EFJ75643.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300397232|gb|EFJ80770.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|300405111|gb|EFJ88649.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300409716|gb|EFJ93254.1| transcriptional repressor activity CueR [Escherichia coli MS
          45-1]
 gi|300412086|gb|EFJ95396.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300418547|gb|EFK01858.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|300450965|gb|EFK14585.1| transcriptional repressor activity CueR [Escherichia coli MS
          116-1]
 gi|300457311|gb|EFK20804.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|300462807|gb|EFK26300.1| transcriptional repressor activity CueR [Escherichia coli MS
          187-1]
 gi|300523583|gb|EFK44652.1| transcriptional repressor activity CueR [Escherichia coli MS
          119-7]
 gi|300528027|gb|EFK49089.1| transcriptional repressor activity CueR [Escherichia coli MS
          107-1]
 gi|300842232|gb|EFK69992.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|300846210|gb|EFK73970.1| transcriptional repressor activity CueR [Escherichia coli MS
          78-1]
 gi|301075411|gb|EFK90217.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|305853334|gb|EFM53773.1| cold shock protein CspG [Escherichia coli NC101]
 gi|306908180|gb|EFN38679.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|307552814|gb|ADN45589.1| cold shock-like protein CspG [Escherichia coli ABU 83972]
 gi|307627598|gb|ADN71902.1| cold shock protein CspG [Escherichia coli UM146]
 gi|308121325|gb|EFO58587.1| transcriptional repressor activity CueR [Escherichia coli MS
          145-7]
 gi|309701267|emb|CBJ00567.1| cold shock-like protein [Escherichia coli ETEC H10407]
 gi|312286354|gb|EFR14267.1| cold shock-like protein cspG [Escherichia coli 2362-75]
 gi|312945495|gb|ADR26322.1| cold shock protein CspG [Escherichia coli O83:H1 str. NRG 857C]
 gi|315060274|gb|ADT74601.1| DNA-binding transcriptional regulator [Escherichia coli W]
 gi|315135640|dbj|BAJ42799.1| cold shock-like protein cspG [Escherichia coli DH1]
 gi|315258037|gb|EFU38005.1| transcriptional repressor activity CueR [Escherichia coli MS
          85-1]
 gi|315287611|gb|EFU47017.1| transcriptional repressor activity CueR [Escherichia coli MS
          110-3]
 gi|315291158|gb|EFU50521.1| transcriptional repressor activity CueR [Escherichia coli MS
          153-1]
 gi|315296282|gb|EFU55588.1| transcriptional repressor activity CueR [Escherichia coli MS
          16-3]
 gi|320175185|gb|EFW50295.1| Cold shock protein CspG [Shigella dysenteriae CDC 74-1112]
 gi|320178568|gb|EFW53533.1| Cold shock protein CspG [Shigella boydii ATCC 9905]
 gi|320187200|gb|EFW61901.1| Cold shock protein CspG [Shigella flexneri CDC 796-83]
 gi|320192513|gb|EFW67155.1| Cold shock protein CspG [Escherichia coli O157:H7 str. EC1212]
 gi|320196522|gb|EFW71145.1| Cold shock protein CspG [Escherichia coli WV_060327]
 gi|320200218|gb|EFW74806.1| Cold shock protein CspG [Escherichia coli EC4100B]
 gi|320637857|gb|EFX07649.1| cold shock protein CspG [Escherichia coli O157:H7 str. G5101]
 gi|320642982|gb|EFX12183.1| cold shock protein CspG [Escherichia coli O157:H- str. 493-89]
 gi|320648439|gb|EFX17094.1| cold shock protein CspG [Escherichia coli O157:H- str. H 2687]
 gi|320653756|gb|EFX21830.1| cold shock protein CspG [Escherichia coli O55:H7 str. 3256-97 TW
          07815]
 gi|320659598|gb|EFX27161.1| cold shock protein CspG [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664369|gb|EFX31520.1| cold shock protein CspG [Escherichia coli O157:H7 str. LSU-61]
 gi|323157489|gb|EFZ43599.1| cold shock-like protein cspG [Escherichia coli EPECa14]
 gi|323158184|gb|EFZ44278.1| cold shock-like protein cspG [Escherichia coli E128010]
 gi|323165477|gb|EFZ51264.1| cold shock-like protein cspG [Shigella sonnei 53G]
 gi|323174903|gb|EFZ60518.1| cold shock-like protein cspG [Escherichia coli LT-68]
 gi|323175877|gb|EFZ61471.1| cold shock-like protein cspG [Escherichia coli 1180]
 gi|323185302|gb|EFZ70666.1| cold shock-like protein cspG [Escherichia coli 1357]
 gi|323379166|gb|ADX51434.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323938094|gb|EGB34356.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1520]
 gi|323942904|gb|EGB39069.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323947221|gb|EGB43229.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323953315|gb|EGB49181.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H252]
 gi|323958282|gb|EGB53991.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H263]
 gi|323962875|gb|EGB58450.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H489]
 gi|323967237|gb|EGB62661.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli M863]
 gi|323973135|gb|EGB68327.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|323976631|gb|EGB71719.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TW10509]
 gi|324009920|gb|EGB79139.1| transcriptional repressor activity CueR [Escherichia coli MS
          57-2]
 gi|324013378|gb|EGB82597.1| transcriptional repressor activity CueR [Escherichia coli MS
          60-1]
 gi|324019120|gb|EGB88339.1| transcriptional repressor activity CueR [Escherichia coli MS
          117-3]
 gi|324117147|gb|EGC11055.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1167]
 gi|326338568|gb|EGD62395.1| Cold shock protein CspG [Escherichia coli O157:H7 str. 1125]
 gi|326347791|gb|EGD71507.1| Cold shock protein CspG [Escherichia coli O157:H7 str. 1044]
 gi|327253387|gb|EGE65025.1| cold shock-like protein cspG [Escherichia coli STEC_7v]
 gi|330910756|gb|EGH39266.1| cold shock protein CspG [Escherichia coli AA86]
 gi|331038319|gb|EGI10539.1| conserved domain protein [Escherichia coli H736]
 gi|331044996|gb|EGI17123.1| conserved domain protein [Escherichia coli M605]
 gi|331050292|gb|EGI22350.1| conserved domain protein [Escherichia coli M718]
 gi|331055298|gb|EGI27307.1| conserved domain protein [Escherichia coli TA206]
 gi|331060819|gb|EGI32783.1| conserved domain protein [Escherichia coli TA143]
 gi|331064966|gb|EGI36861.1| conserved domain protein [Escherichia coli TA271]
 gi|331070167|gb|EGI41533.1| conserved domain protein [Escherichia coli TA280]
 gi|331075469|gb|EGI46767.1| conserved domain protein [Escherichia coli H591]
 gi|331080126|gb|EGI51305.1| conserved domain protein [Escherichia coli H299]
 gi|332092462|gb|EGI97535.1| cold shock-like protein cspG [Shigella boydii 5216-82]
 gi|332093343|gb|EGI98401.1| cold shock-like protein cspG [Shigella boydii 3594-74]
 gi|332095879|gb|EGJ00886.1| cold shock-like protein cspG [Shigella dysenteriae 155-74]
 gi|332102180|gb|EGJ05526.1| cold shock protein CspG [Shigella sp. D9]
 gi|332342432|gb|AEE55766.1| cold shock-like protein CspG [Escherichia coli UMNK88]
          Length = 70

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFITP+  ++   DVF+H +A+ S     L E Q V +   Q
Sbjct: 7  GLVKWFNADKGFGFITPDDGSK---DVFVHFTAIQSNEFRTLNENQKVEFSIEQ 57


>gi|261868763|ref|YP_003256685.1| cold-shock DNA-binding domain-containing protein [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|261414095|gb|ACX83466.1| cold-shock DNA-binding domain protein [Aggregatibacter
          actinomycetemcomitans D11S-1]
          Length = 69

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   T+   DVF+H S +       L EG  V Y+ VQN   G 
Sbjct: 6  GTVKWFNSIKGFGFIAP---TDGSKDVFVHFSGIVGNNFRTLNEGDHVAYN-VQNSQRGP 61

Query: 65 YSAE 68
           + E
Sbjct: 62 TAIE 65


>gi|239627541|ref|ZP_04670572.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          bacterium 1_7_47_FAA]
 gi|239517687|gb|EEQ57553.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          bacterium 1_7_47FAA]
          Length = 65

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI    S E G+DVF+H S +   G  +L EG  V ++ V N A G
Sbjct: 2  KGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLDEGAEVEFEVV-NGAKG 56

Query: 64 KYSAENLKL 72
            +    +L
Sbjct: 57 PQATNVTRL 65


>gi|58584964|ref|YP_198537.1| cold shock protein [Wolbachia endosymbiont strain TRS of Brugia
          malayi]
 gi|58419280|gb|AAW71295.1| Cold shock protein [Wolbachia endosymbiont strain TRS of Brugia
          malayi]
          Length = 84

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 16/82 (19%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----------NLTEGQLVTY 54
          G+IKW+N +KGYGFI PE    +G+D+F+H S +  +G+              +G+ V+Y
Sbjct: 4  GNIKWFNAEKGYGFIKPEA---NGNDIFVHISTLERSGIRPDSLRGENKEKGIKGERVSY 60

Query: 55 DYVQ---NDANGKYSAENLKLV 73
          +  +    +  GK  A NLKL+
Sbjct: 61 ELKEERGRNGEGKKFAINLKLL 82


>gi|325121612|gb|ADY81135.1| cold shock-like protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 69

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      ++G DVF H   ++S+G   L EGQ V+++  Q
Sbjct: 7  GTVKWFNETKGFGFI----QQDTGPDVFAHFKEISSSGFKTLYEGQRVSFNIAQ 56


>gi|260550026|ref|ZP_05824241.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter
          sp. RUH2624]
 gi|260407018|gb|EEX00496.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter
          sp. RUH2624]
          Length = 71

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI     T+ G DVF H S + + G   L EGQ V +   Q
Sbjct: 6  GTVKWFNETKGFGFI----QTDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQ 55


>gi|71278580|ref|YP_269596.1| cold shock-like protein CspD [Colwellia psychrerythraea 34H]
 gi|71144320|gb|AAZ24793.1| cold shock-like protein CspD [Colwellia psychrerythraea 34H]
          Length = 72

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M H G++KW+N  KG+GFI P+     G+D+F H S +   G   L  GQ V  DY  ND
Sbjct: 1  MAH-GTVKWFNNAKGFGFIRPD---SGGEDIFAHYSTIEMDGYRTLKAGQDV--DYELND 54

Query: 61 ANGKYSAENLKLV 73
              + A ++KL 
Sbjct: 55 GPKGHHAASIKLA 67


>gi|295677335|ref|YP_003605859.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|295437178|gb|ADG16348.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
          Length = 67

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT   S   G+D+F H S + S G  +L E Q V+++ V+   
Sbjct: 1  METGVVKWFNDAKGFGFIT---SDAGGEDLFAHFSEIRSEGFKSLKENQRVSFE-VKTSP 56

Query: 62 NGKYSA 67
           GK +A
Sbjct: 57 KGKQAA 62


>gi|126641275|ref|YP_001084259.1| cold shock protein [Acinetobacter baumannii ATCC 17978]
 gi|169796561|ref|YP_001714354.1| cold shock-like protein [Acinetobacter baumannii AYE]
 gi|184157530|ref|YP_001845869.1| cold shock protein [Acinetobacter baumannii ACICU]
 gi|213156325|ref|YP_002318745.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          AB0057]
 gi|215484022|ref|YP_002326247.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB307-0294]
 gi|239503700|ref|ZP_04663010.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB900]
 gi|260558025|ref|ZP_05830237.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
 gi|332854616|ref|ZP_08435438.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150]
 gi|332867722|ref|ZP_08437811.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113]
 gi|332875420|ref|ZP_08443246.1| cold shock-like protein CspE [Acinetobacter baumannii 6014059]
 gi|126387159|gb|ABO11657.1| Cold shock protein [Acinetobacter baumannii ATCC 17978]
 gi|169149488|emb|CAM87376.1| cold shock-like protein [Acinetobacter baumannii AYE]
 gi|183209124|gb|ACC56522.1| Cold shock protein [Acinetobacter baumannii ACICU]
 gi|213055485|gb|ACJ40387.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          AB0057]
 gi|213988970|gb|ACJ59269.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB307-0294]
 gi|260408535|gb|EEX01841.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
 gi|322507844|gb|ADX03298.1| Cold shock protein [Acinetobacter baumannii 1656-2]
 gi|323517444|gb|ADX91825.1| cold shock protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332727900|gb|EGJ59299.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150]
 gi|332733806|gb|EGJ64957.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113]
 gi|332736356|gb|EGJ67357.1| cold shock-like protein CspE [Acinetobacter baumannii 6014059]
          Length = 71

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI     T+ G DVF H S + + G   L EGQ V +   Q
Sbjct: 6  GTVKWFNETKGFGFI----QTDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQ 55


>gi|260773863|ref|ZP_05882778.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
 gi|260610824|gb|EEX36028.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
          Length = 70

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI+ +     G DVF+H +++ S G   L EGQ V++    N   GK
Sbjct: 7  GTVKWFNETKGFGFISQD---NGGKDVFVHFNSIVSDGFKTLAEGQKVSF----NVEEGK 59

Query: 65 YSAENLKLVP 74
             +  ++ P
Sbjct: 60 KGPQATEVTP 69


>gi|227487248|ref|ZP_03917564.1| CspA family cold shock transcriptional regulator [Corynebacterium
          glucuronolyticum ATCC 51867]
 gi|227541584|ref|ZP_03971633.1| CspA family cold shock transcriptional regulator [Corynebacterium
          glucuronolyticum ATCC 51866]
 gi|227092906|gb|EEI28218.1| CspA family cold shock transcriptional regulator [Corynebacterium
          glucuronolyticum ATCC 51867]
 gi|227182552|gb|EEI63524.1| CspA family cold shock transcriptional regulator [Corynebacterium
          glucuronolyticum ATCC 51866]
          Length = 67

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G+++W+NP+ GYGFI  +   ESG D+F+  S +  AG   L E Q V Y +V     G
Sbjct: 3  QGTVRWFNPESGYGFIIDD---ESGQDLFVRYSDIEGAGFRTLQENQRVDY-FVMEGPKG 58

Query: 64 KYSAE 68
           +++ 
Sbjct: 59 AHASR 63


>gi|111017122|ref|YP_700094.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|110816652|gb|ABG91936.1| cold shock protein [Rhodococcus jostii RHA1]
          Length = 119

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G+++W+N ++G+GF+ P    +  DD+F+H S +A  G   L EGQ V++   + +
Sbjct: 56  GTVRWFNAEQGFGFLAP---ADGSDDIFVHVSEIAGDGHRILEEGQRVSFAVCRTE 108


>gi|2970685|gb|AAC06037.1| cold shock protein C [Salmonella enterica subsp. enterica serovar
          Typhimurium]
          Length = 69

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G  KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 5  KGQGKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60


>gi|256375184|ref|YP_003098844.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
 gi|255919487|gb|ACU34998.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
          Length = 68

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M  +G++KW+N +KG+GFI+P+     G DVF+H S +   G   L E Q V ++  Q
Sbjct: 1  MAVQGTVKWFNAEKGFGFISPD---NGGADVFVHYSEIQVNGYRTLEENQRVEFEIGQ 55


>gi|56459145|ref|YP_154426.1| cold shock protein [Idiomarina loihiensis L2TR]
 gi|56178155|gb|AAV80877.1| Cold shock protein [Idiomarina loihiensis L2TR]
          Length = 68

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +K++N  KG+GFI      E+G DVF+H SA+ S G   L EGQ V++   Q
Sbjct: 6  GKVKFFNEAKGFGFI----EQENGADVFVHFSAIQSDGFKTLAEGQQVSFTVAQ 55


>gi|153854155|ref|ZP_01995463.1| hypothetical protein DORLON_01454 [Dorea longicatena DSM 13814]
 gi|149753204|gb|EDM63135.1| hypothetical protein DORLON_01454 [Dorea longicatena DSM 13814]
          Length = 65

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N  KGYGFI    S   G DVF+H S +   G   L EGQ V Y+  +
Sbjct: 2  KGTVKWFNNQKGYGFI----SDAEGHDVFVHYSGLNMEGFKTLEEGQEVEYEVTE 52


>gi|86137410|ref|ZP_01055987.1| cold shock family protein [Roseobacter sp. MED193]
 gi|85825745|gb|EAQ45943.1| cold shock family protein [Roseobacter sp. MED193]
          Length = 72

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G DVF+H S V  +GL  L +   V Y+  +   +G+
Sbjct: 4  GTVKWFNTTKGFGFIEPDA---GGSDVFVHISQVERSGLTGLADNMKVDYELTEG-RDGR 59

Query: 65 YSAENLK 71
            A ++K
Sbjct: 60 QMAGDIK 66


>gi|289423507|ref|ZP_06425308.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
 gi|289156009|gb|EFD04673.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
          Length = 66

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GFI+ +G     +DVF+H SA+   G  +L EGQ V ++ V
Sbjct: 4  GVVKWFNNEKGFGFISVDGE----NDVFVHFSAIQGDGYKSLEEGQQVEFEIV 52


>gi|27366952|ref|NP_762479.1| cold shock protein CspE [Vibrio vulnificus CMCP6]
 gi|37676727|ref|NP_937123.1| cold shock protein [Vibrio vulnificus YJ016]
 gi|320158831|ref|YP_004191209.1| cold shock protein CspE [Vibrio vulnificus MO6-24/O]
 gi|27358519|gb|AAO07469.1| Cold shock protein CspE [Vibrio vulnificus CMCP6]
 gi|37201270|dbj|BAC97093.1| cold shock protein [Vibrio vulnificus YJ016]
 gi|319934143|gb|ADV89006.1| cold shock protein CspE [Vibrio vulnificus MO6-24/O]
          Length = 69

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V++   Q     +
Sbjct: 7  GTVKWFNETKGFGFI----KQENGPDVFAHFSAIKGDGFRTLAEGQKVSFVISQGQKGPQ 62

Query: 65 YSAENLKLV 73
            AE + L+
Sbjct: 63 --AEEITLL 69


>gi|119775193|ref|YP_927933.1| cold-shock DNA-binding domain-containing protein [Shewanella
          amazonensis SB2B]
 gi|119767693|gb|ABM00264.1| cold-shock DNA-binding protein family [Shewanella amazonensis
          SB2B]
          Length = 68

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI P+   E G+DVF H S +   G   L  GQ V ++  Q
Sbjct: 4  GTVKWFNNAKGFGFICPD---EGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEQ 54


>gi|269139554|ref|YP_003296255.1| cold shock protein [Edwardsiella tarda EIB202]
 gi|267985215|gb|ACY85044.1| cold shock protein [Edwardsiella tarda EIB202]
 gi|304559442|gb|ADM42106.1| Cold shock protein CspD [Edwardsiella tarda FL6-60]
          Length = 73

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI P      GDD+F H +A+   G   L  GQ V +D
Sbjct: 4  GTVKWFNNAKGFGFICP---ASGGDDIFAHYTAIQMEGYRTLKAGQQVQFD 51


>gi|262372757|ref|ZP_06066036.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
 gi|262312782|gb|EEY93867.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
          Length = 72

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      +SG DVF H S + S G   L EGQ V++   Q
Sbjct: 7  GTVKWFNETKGFGFI----HADSGQDVFAHFSEIQSNGFKVLHEGQRVSFTVAQ 56


>gi|262276771|ref|ZP_06054564.1| conserved domain protein [alpha proteobacterium HIMB114]
 gi|262223874|gb|EEY74333.1| conserved domain protein [alpha proteobacterium HIMB114]
          Length = 68

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N  KGYGFI  E   +   DVF+H SAV  +G+  L EG  +T++ ++  
Sbjct: 1  MSIKGKVKWFNGTKGYGFIEREDKEK---DVFVHMSAVKDSGVGYLDEGDSLTFE-IEEG 56

Query: 61 ANGKYSAENLK 71
            G  SA NLK
Sbjct: 57 KKGP-SAVNLK 66


>gi|330819200|ref|YP_004348062.1| Cold shock protein [Burkholderia gladioli BSR3]
 gi|327371195|gb|AEA62550.1| Cold shock protein [Burkholderia gladioli BSR3]
          Length = 67

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFI P+ S    DD+F H S +   G  +L EGQ V+++
Sbjct: 4  GIVKWFNDSKGFGFIAPDNSK---DDLFAHFSEIRGDGFRSLVEGQRVSFE 51


>gi|209972098|gb|ACJ03560.1| cold shock protein [Bacillus thuringiensis serovar poloniensis]
          Length = 67

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+ +
Sbjct: 1  MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSLE 51


>gi|71065101|ref|YP_263828.1| cold-shock DNA-binding protein family protein [Psychrobacter
          arcticus 273-4]
 gi|93005356|ref|YP_579793.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          cryohalolentis K5]
 gi|71038086|gb|AAZ18394.1| cold-shock DNA-binding protein family [Psychrobacter arcticus
          273-4]
 gi|92393034|gb|ABE74309.1| cold-shock DNA-binding protein family [Psychrobacter
          cryohalolentis K5]
 gi|118185010|gb|ABK76501.1| CspA-like protein [Psychrobacter sp. B6]
          Length = 70

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  +     G DVF H SA+   G   L EGQ V+  ++  D   
Sbjct: 6  EGTVKWFNEAKGFGFIAQD---NGGQDVFAHYSAIQGGGFKTLAEGQKVS--FILGDGKK 60

Query: 64 KYSAENLKLV 73
             AE ++ +
Sbjct: 61 GPQAEQIEAI 70


>gi|299770790|ref|YP_003732816.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
 gi|298700878|gb|ADI91443.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
          Length = 69

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      ++G DVF H   ++S+G   L EGQ V+++  Q
Sbjct: 7  GTVKWFNETKGFGFI----QQDAGPDVFAHFKEISSSGFKTLYEGQRVSFNIAQ 56


>gi|296128179|ref|YP_003635429.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296019994|gb|ADG73230.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 418

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 5/50 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G++ WY P KGYGF+TP+G    G ++F+H SAV   G+  L +GQ V +
Sbjct: 79  GTVSWYEPAKGYGFLTPDG---GGAEIFVHSSAVVGGGV--LHDGQRVAF 123



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++ WY+ +KG+GF+ P+   + G+DVF H  ++   GL  L EG  VT+D V  D    
Sbjct: 158 GTVTWYDAEKGFGFVAPD---DGGEDVFAHAKSLV-GGLSELVEGDRVTFDVV--DGEKG 211

Query: 65  YSAENLKLV 73
             A +++LV
Sbjct: 212 PQARDIRLV 220



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++  Y+ D+G+GFI P+     GDD+F+H S V   G   L EG  V Y+  Q+D
Sbjct: 251 GTVARYDADRGFGFIRPDA---GGDDLFVHVSVV--RGDEPLEEGDRVRYEVRQSD 301


>gi|304397050|ref|ZP_07378929.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|304355199|gb|EFM19567.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
          Length = 74

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI P G    G+D+F H S +   G   L  GQ V +D
Sbjct: 4  GTVKWFNNSKGFGFICPVG---GGEDIFAHYSTIQMEGYRTLKAGQQVQFD 51


>gi|304321239|ref|YP_003854882.1| cold shock protein [Parvularcula bermudensis HTCC2503]
 gi|303300141|gb|ADM09740.1| cold shock protein [Parvularcula bermudensis HTCC2503]
          Length = 173

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +KW++  KGYGFIT E     G DV +H S +  +G     EG +VT + ++++
Sbjct: 15 RGFVKWFDQTKGYGFITDEA---GGRDVLIHSSCLKQSGRATAPEGAIVTCEAIESE 68



 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           ++KW++  KGYGF+T   +T + +D+F+H   V +AGL  L  GQ +   Y
Sbjct: 108 TVKWFSRAKGYGFLT---ATNANEDIFVHMEVVRAAGLSELQPGQRLRASY 155


>gi|127512493|ref|YP_001093690.1| cold-shock DNA-binding domain-containing protein [Shewanella
          loihica PV-4]
 gi|126637788|gb|ABO23431.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4]
          Length = 68

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PE     G+DVF H S +   G   L  GQ V ++  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEA---GGEDVFAHYSTIEMEGYRTLKAGQSVQFEVEQ 54


>gi|108803028|ref|YP_642965.1| cold-shock DNA-binding protein family protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108764271|gb|ABG03153.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 67

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW++ +KGYGFI+P+  +E   D+F+H + +   G   L EG  V+Y+
Sbjct: 3  QGTVKWFSDEKGYGFISPDDGSE---DLFVHYTGIEGTGFKTLEEGARVSYE 51


>gi|330965607|gb|EGH65867.1| cold shock domain family protein [Pseudomonas syringae pv.
          actinidiae str. M302091]
          Length = 94

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  +  +D+F H SA+   G   L  GQ V++D +Q
Sbjct: 6  GKVKWFNNAKGYGFILEDGKPD--EDLFAHFSAIQMDGYKTLKAGQPVSFDIIQ 57


>gi|317509214|ref|ZP_07966835.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
 gi|316252424|gb|EFV11873.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
          Length = 145

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ DKG+GF+T     E GDDV++  SA+  AGL  L  GQ+V +      A
Sbjct: 5  VPTGKVKWYSADKGFGFLT----QEDGDDVYVGSSAL-PAGLEGLKPGQIVEFGM----A 55

Query: 62 NGKYSAENLKL 72
          +G+   + L +
Sbjct: 56 DGRRGPQALSI 66


>gi|332856166|ref|ZP_08436156.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150]
 gi|332871668|ref|ZP_08440139.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113]
 gi|332727143|gb|EGJ58603.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150]
 gi|332731306|gb|EGJ62602.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113]
          Length = 83

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      ++G DVF H   ++S+G   L EGQ V+++  Q
Sbjct: 21 GTVKWFNETKGFGFI----QQDTGPDVFAHFKEISSSGFKTLYEGQRVSFNIAQ 70


>gi|300698107|ref|YP_003748768.1| cold shock/stress protein, member of the Csp-family [Ralstonia
          solanacearum CFBP2957]
 gi|299074831|emb|CBJ54398.1| cold shock/stress protein, member of the Csp-family [Ralstonia
          solanacearum CFBP2957]
          Length = 67

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KW+N  KG+GFITP+     G+D+F H S V   G  +L EGQ V++
Sbjct: 1  METGIVKWFNDSKGFGFITPD---AGGNDLFAHFSEVQGNGFKSLQEGQKVSF 50


>gi|302873232|ref|YP_003841865.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307688601|ref|ZP_07631047.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302576089|gb|ADL50101.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans
          743B]
          Length = 65

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFIT    ++ G ++F+H S ++  G  +L EG  V+++  ++  N 
Sbjct: 2  QGNVKWFNGLKGYGFIT----SDDGSEIFVHYSGISGEGYKSLEEGDKVSFETAEH--NN 55

Query: 64 KYSAENLKLV 73
          K  A N+K +
Sbjct: 56 KLQAVNVKKI 65


>gi|238753480|ref|ZP_04614843.1| Cold shock-like protein cspD [Yersinia ruckeri ATCC 29473]
 gi|238708433|gb|EEQ00788.1| Cold shock-like protein cspD [Yersinia ruckeri ATCC 29473]
          Length = 73

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PE     G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 4  GTVKWFNNAKGFGFICPE---NGGEDIFAHYSTIQMDGYRTLKAGQQVNFDIHQ 54


>gi|117620914|ref|YP_857368.1| hypothetical protein AHA_2864 [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|145298472|ref|YP_001141313.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida
          A449]
 gi|117562321|gb|ABK39269.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
 gi|142851244|gb|ABO89565.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida
          A449]
          Length = 69

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++K++N  KG+GFI      E+G DVF+H SA++  G   L EGQ V +   Q
Sbjct: 7  GTVKFFNETKGFGFI----QQENGPDVFVHFSAISGNGFRTLAEGQRVQFSVTQ 56


>gi|226944903|ref|YP_002799976.1| cold shock protein, CspD [Azotobacter vinelandii DJ]
 gi|226719830|gb|ACO79001.1| cold shock protein, CspD [Azotobacter vinelandii DJ]
          Length = 92

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  E   D+F H SA+   G   L  GQ VT++ +Q
Sbjct: 4  GKVKWFNNAKGYGFIVADGRDE---DLFAHYSAIQMDGYKTLKAGQAVTFELLQ 54


>gi|312961675|ref|ZP_07776173.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
 gi|311283934|gb|EFQ62517.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
          Length = 91

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGF+  +  TE   D+F H SA+   G   L  GQ+V+++ +Q
Sbjct: 8  GKVKWFNNAKGYGFVNEDRKTE---DLFAHYSAIIMDGYKTLKAGQVVSFEIIQ 58


>gi|145225805|ref|YP_001136483.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          gilvum PYR-GCK]
 gi|315442490|ref|YP_004075369.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
 gi|145218291|gb|ABP47695.1| cold-shock DNA-binding protein family [Mycobacterium gilvum
          PYR-GCK]
 gi|315260793|gb|ADT97534.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
          Length = 67

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N +KG+GFI P+  ++   DVF+H S ++ +G  +L E Q V ++  Q +
Sbjct: 3  QGTVKWFNGEKGFGFIAPDDGSK---DVFVHYSEISGSGYRSLEENQRVEFEVEQGN 56


>gi|50085086|ref|YP_046596.1| cold shock-like protein [Acinetobacter sp. ADP1]
 gi|49531062|emb|CAG68774.1| cold shock-like protein [Acinetobacter sp. ADP1]
          Length = 69

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G++KW+N  KG+GFI      +SG DVF H   +AS+G   L EGQ V++  V
Sbjct: 7  GTVKWFNEVKGFGFI----QQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIV 55


>gi|321468514|gb|EFX79498.1| hypothetical protein DAPPUDRAFT_52316 [Daphnia pulex]
          Length = 147

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N  KG+GFITP+   +   DVF+H+S +   G  NL EG+ V  +    D
Sbjct: 1  GRCKWFNVTKGWGFITPD---DGSPDVFVHQSVIRMNGFRNLAEGEEVEMETKDAD 53


>gi|118591841|ref|ZP_01549236.1| cold shock protein [Stappia aggregata IAM 12614]
 gi|118435484|gb|EAV42130.1| cold shock protein [Stappia aggregata IAM 12614]
          Length = 286

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++  DKG+GFITP+   E   DVF+H SAV  +G   L  GQ V+++  + D  GK
Sbjct: 205 GTVKFFKNDKGFGFITPD---EGDADVFVHISAVERSGFAGLDSGQRVSFE-TEPDRRGK 260


>gi|1706172|sp|P54584|CSP_ARTGO RecName: Full=Cold shock protein
 gi|758663|gb|AAB81323.1| cold shock protein [Arthrobacter globiformis]
          Length = 67

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFITP+   +S  DVF+H S + + G   L E   V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFITPD---DSDGDVFVHYSEIQTGGFKTLDENARVQFEIGQ 54


>gi|222056386|ref|YP_002538748.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
 gi|221565675|gb|ACM21647.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
          Length = 66

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GF+      E+G+DVF H SA++  G  +L EG  V ++  +
Sbjct: 4  GTVKWFNDSKGFGFL----EQENGEDVFCHFSAISGEGFKSLAEGDRVQFEVTK 53


>gi|312796301|ref|YP_004029223.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
 gi|312168076|emb|CBW75079.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
          Length = 72

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  KG+GFITP+     G+D+F H S V   G   L E Q V+Y
Sbjct: 9  GIVKWFNDSKGFGFITPDA---GGEDLFAHFSEVTGEGFKTLVENQRVSY 55


>gi|94314735|ref|YP_587944.1| major cold shock protein [Cupriavidus metallidurans CH34]
 gi|93358587|gb|ABF12675.1| major cold shock protein [Cupriavidus metallidurans CH34]
          Length = 67

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+     GDD+F H S V + G  +L E Q V+++ V+N  
Sbjct: 1  MQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEVRADGFKSLQENQRVSFE-VKNGP 56

Query: 62 NGKYSA 67
           G  +A
Sbjct: 57 KGLQAA 62


>gi|332284619|ref|YP_004416530.1| cold shock-like protein [Pusillimonas sp. T7-7]
 gi|330428572|gb|AEC19906.1| cold shock-like protein [Pusillimonas sp. T7-7]
          Length = 69

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI PE     G D+F H S +  +G  +L E Q V+  +V ++    
Sbjct: 6  GIVKWFNNDKGFGFIMPE---SGGKDLFAHYSEIQGSGHKSLEENQRVS--FVASEGQKG 60

Query: 65 YSAENLKLV 73
            A N+++V
Sbjct: 61 PQASNIQVV 69


>gi|227356923|ref|ZP_03841300.1| CspA family cold shock transcriptional regulator [Proteus
          mirabilis ATCC 29906]
 gi|227162921|gb|EEI47871.1| CspA family cold shock transcriptional regulator [Proteus
          mirabilis ATCC 29906]
          Length = 70

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V++
Sbjct: 7  GTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDSFKTLAEGQQVSF 53


>gi|71065502|ref|YP_264229.1| cold-shock DNA-binding protein family protein [Psychrobacter
          arcticus 273-4]
 gi|71038487|gb|AAZ18795.1| cold-shock DNA-binding protein family [Psychrobacter arcticus
          273-4]
          Length = 71

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G +KW+N  KG+GFI      +SG+D+F+H  A+   G  +L +G+ V +  V+ D  
Sbjct: 5  EQGIVKWFNDSKGFGFI----QRDSGEDIFVHFRAIQGDGYRSLKDGEKVEFSVVEGDKG 60

Query: 63 GKYSAENLKLVPK 75
              AE ++ V +
Sbjct: 61 --LQAEEVRRVEE 71


>gi|123187095|gb|ABM69256.1| CspA-like protein [Arthrobacter sp. B5]
          Length = 66

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G++KW+N  KG+GFI  +     G DVF H SA+   G   L EGQ V++
Sbjct: 6  EGTVKWFNEAKGFGFIAQD---NGGQDVFAHYSAIQGGGFKTLAEGQKVSF 53


>gi|91805295|gb|ABE65379.1| CspC [Escherichia coli]
          Length = 69

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+ FITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 5  KGQVKWFNESKGFRFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60


>gi|317492863|ref|ZP_07951287.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918985|gb|EFV40320.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 70

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW++  KG+GFI+PE  ++   DVF+H SA+ S     L EGQ V +  ++N A G
Sbjct: 7  GLVKWFDAGKGFGFISPEDGSK---DVFVHFSAIQSNDFKTLDEGQKVEFS-IENGAKG 61


>gi|262278468|ref|ZP_06056253.1| predicted protein [Acinetobacter calcoaceticus RUH2202]
 gi|299769413|ref|YP_003731439.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
 gi|262258819|gb|EEY77552.1| predicted protein [Acinetobacter calcoaceticus RUH2202]
 gi|298699501|gb|ADI90066.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
          Length = 69

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      ++G DVF H   ++ +G   L EGQ VT+   Q    G+
Sbjct: 7  GTVKWFNETKGFGFI----QQDNGPDVFAHFKEISGSGFKTLHEGQRVTFTVTQ----GQ 58

Query: 65 YSAENLKLVPK 75
               + ++P+
Sbjct: 59 KGPNAVNIIPQ 69


>gi|167566047|ref|ZP_02358963.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
          EO147]
 gi|167573125|ref|ZP_02365999.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
          C6786]
          Length = 67

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI+P+     GDD+F H S +   G   L E Q V+++
Sbjct: 4  GTVKWFNDSKGFGFISPD---SGGDDLFAHFSEIRGEGFKTLAENQKVSFE 51


>gi|126668437|ref|ZP_01739394.1| Cold shock protein [Marinobacter sp. ELB17]
 gi|126627146|gb|EAZ97786.1| Cold shock protein [Marinobacter sp. ELB17]
          Length = 69

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI    + E G DVF+H SA+ + G   L EGQ V +     D    
Sbjct: 7  GHVKWFNEAKGFGFI----AQEDGSDVFVHFSAINADGFRTLAEGQKVQFTV--TDGPKG 60

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 61 PQAENVTPV 69


>gi|224369441|ref|YP_002603605.1| CspB1 [Desulfobacterium autotrophicum HRM2]
 gi|223692158|gb|ACN15441.1| CspB1 [Desulfobacterium autotrophicum HRM2]
          Length = 66

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFI      E+G DVF+H S + + G  +L EG  V++D
Sbjct: 4  GIVKWFNDSKGFGFI----EQENGKDVFVHHSGINATGFKSLNEGDRVSFD 50


>gi|119469733|ref|ZP_01612602.1| Cold shock protein [Alteromonadales bacterium TW-7]
 gi|119446980|gb|EAW28251.1| Cold shock protein [Alteromonadales bacterium TW-7]
          Length = 69

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFI      ESG DVF H SA++  G   L EGQ V +   Q     +
Sbjct: 7  GTVKFFNEAKGFGFI----EQESGPDVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKGPQ 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 --AENI 66


>gi|332295605|ref|YP_004437528.1| cold-shock DNA-binding domain protein [Thermodesulfobium
          narugense DSM 14796]
 gi|332178708|gb|AEE14397.1| cold-shock DNA-binding domain protein [Thermodesulfobium
          narugense DSM 14796]
          Length = 68

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KGYGFI+ +   +   DVF+H SA+   G   L +GQ V ++ V
Sbjct: 4  GKVKWFNNEKGYGFISKD---DGSGDVFVHYSAIQGKGFRTLEQGQAVQFEIV 53


>gi|328542846|ref|YP_004302955.1| cold shock-like transcription regulator protein [polymorphum gilvum
           SL003B-26A1]
 gi|326412592|gb|ADZ69655.1| Putative cold shock-like transcription regulator protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 250

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++  DKG+GFITP+       DVF+H SAV  +G   L  GQ V+++  + D  GK
Sbjct: 169 GTVKFFKSDKGFGFITPDNGEA---DVFVHISAVERSGFTTLDSGQRVSFE-TEPDRRGK 224


>gi|239809492|gb|ACS26216.1| unknown [uncultured bacterium]
          Length = 69

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFI      E+G DVF+H SA+  AG   L EGQ V +   Q     +
Sbjct: 7  GTVKFFNEAKGFGFI----QRENGPDVFVHFSAIQGAGFKTLAEGQKVQFTVGQGQKGPQ 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 --AENV 66


>gi|116696515|ref|YP_842091.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|113531014|emb|CAJ97361.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
          Length = 98

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G +KW+N  KG+GFI P+     GDD+F H S + + G  +L E Q V ++ V+N 
Sbjct: 17 IMQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEIRADGFKSLQENQRVQFE-VKNG 72

Query: 61 ANGKYSA 67
            G  +A
Sbjct: 73 PKGLQAA 79


>gi|296135805|ref|YP_003643047.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12]
 gi|294339970|emb|CAZ88333.1| Cold shock protein [Thiomonas sp. 3As]
 gi|295795927|gb|ADG30717.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12]
          Length = 67

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI P+   E G+D+F H S + + G   L E Q V +
Sbjct: 4  GTVKWFNESKGFGFIKPD---EGGEDLFAHFSEIQAKGFRTLQENQRVEF 50


>gi|197284851|ref|YP_002150723.1| cold shock protein [Proteus mirabilis HI4320]
 gi|194682338|emb|CAR42146.1| cold shock protein [Proteus mirabilis HI4320]
          Length = 70

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V++
Sbjct: 7  GTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDNFKTLAEGQQVSF 53


>gi|296394808|ref|YP_003659692.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rotundus DSM 44985]
 gi|296181955|gb|ADG98861.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
          44985]
          Length = 68

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQND 60
          +G++KW+N +KG+GFI P+   + G D+F+H S + S G F  L E Q V ++   +D
Sbjct: 3  QGTVKWFNEEKGFGFIAPD---DGGKDLFVHFSGIVSEGGFRTLQENQRVKFETQASD 57


>gi|226304000|ref|YP_002763958.1| cold shock protein [Rhodococcus erythropolis PR4]
 gi|229494807|ref|ZP_04388563.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|226183115|dbj|BAH31219.1| probable cold shock protein [Rhodococcus erythropolis PR4]
 gi|229318303|gb|EEN84168.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI PE   +   DVF+H S +   G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQRVEFEVGQ 54


>gi|301062851|ref|ZP_07203444.1| cold shock protein CspD [delta proteobacterium NaphS2]
 gi|300443051|gb|EFK07223.1| cold shock protein CspD [delta proteobacterium NaphS2]
          Length = 66

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KG+GFI      E G DVF+H SA+   G  +L EG  V++D ++    G 
Sbjct: 4  GTVKWFSDQKGFGFI----EQEDGPDVFVHHSAILMEGFKSLNEGDQVSFD-IEEGQKGP 58

Query: 65 YSAENLKLV 73
           +A N+K++
Sbjct: 59 AAA-NVKVM 66


>gi|289152158|gb|ADC84009.1| cold shock-like protein [Escherichia coli]
          Length = 69

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++ +Q+   G
Sbjct: 7  QVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60


>gi|262279640|ref|ZP_06057425.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          calcoaceticus RUH2202]
 gi|262259991|gb|EEY78724.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          calcoaceticus RUH2202]
          Length = 71

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI     T+ G D+F H + + + G   L EGQ V +  VQ     +
Sbjct: 6  GTVKWFNETKGFGFIV----TDEGKDIFAHFTDIQTPGFKVLLEGQRVEFTVVQGKKGPQ 61

Query: 65 YSAENLKLVPKS 76
            A N+ +V  S
Sbjct: 62 --ASNIVIVQNS 71


>gi|260779178|ref|ZP_05888070.1| cold shock protein CspD [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605342|gb|EEX31637.1| cold shock protein CspD [Vibrio coralliilyticus ATCC BAA-450]
          Length = 73

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI PEG  E G DVF H S +   G   L  GQ VT++
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DVFAHYSTIKMDGYRTLKAGQQVTFE 51


>gi|145221984|ref|YP_001132662.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          gilvum PYR-GCK]
 gi|315446276|ref|YP_004079155.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
 gi|145214470|gb|ABP43874.1| cold-shock DNA-binding protein family [Mycobacterium gilvum
          PYR-GCK]
 gi|315264579|gb|ADU01321.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KG+GFI PE   +   DVF+H + +  +G   L E Q V ++  Q+
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQS 55


>gi|30062528|ref|NP_836699.1| cold shock protein CspG [Shigella flexneri 2a str. 2457T]
 gi|56479790|ref|NP_706912.2| cold shock protein CspG [Shigella flexneri 2a str. 301]
 gi|110805005|ref|YP_688525.1| cold shock protein CspG [Shigella flexneri 5 str. 8401]
 gi|312971120|ref|ZP_07785299.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|30040774|gb|AAP16505.1| putative cold shock protein [Shigella flexneri 2a str. 2457T]
 gi|56383341|gb|AAN42619.2| putative cold shock protein [Shigella flexneri 2a str. 301]
 gi|110614553|gb|ABF03220.1| cold shock-like protein CspG [Shigella flexneri 5 str. 8401]
 gi|281600354|gb|ADA73338.1| Cold shock-like protein cspG [Shigella flexneri 2002017]
 gi|310336881|gb|EFQ02048.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|313650757|gb|EFS15158.1| cold shock-like protein cspG [Shigella flexneri 2a str. 2457T]
 gi|315619077|gb|EFU99658.1| cold shock-like protein cspG [Escherichia coli 3431]
 gi|323190646|gb|EFZ75916.1| cold shock-like protein cspG [Escherichia coli RN587/1]
 gi|332762777|gb|EGJ93040.1| cold shock-like protein cspG [Shigella flexneri K-671]
 gi|332767786|gb|EGJ97977.1| cold shock protein CspG [Shigella flexneri 2930-71]
 gi|333008663|gb|EGK28129.1| cold shock-like protein cspG [Shigella flexneri K-272]
 gi|333020008|gb|EGK39279.1| cold shock-like protein cspG [Shigella flexneri K-304]
          Length = 66

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N DKG+GFITP+  ++   DVF+H +A+ S     L E Q V +   Q
Sbjct: 3  GLVKWFNADKGFGFITPDDGSK---DVFVHFTAIQSNEFRTLNENQKVEFSIEQ 53


>gi|120406346|ref|YP_956175.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          vanbaalenii PYR-1]
 gi|119959164|gb|ABM16169.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KG+GFI PE   +   DVF+H + +  +G   L E Q V ++  Q+
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQS 55


>gi|330875784|gb|EGH09933.1| cold shock domain family protein [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 92

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  +  +D+F H SA+   G   L  GQ V++D +Q
Sbjct: 4  GKVKWFNNAKGYGFILEDGKPD--EDLFAHFSAIQMDGYKTLKAGQPVSFDIIQ 55


>gi|330940302|gb|EGH43422.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 91

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G +KW+N  KG+GFI  EG+ E   D+F H SA+   G   L  GQ V ++ VQ
Sbjct: 3  EGKVKWFNNAKGFGFINAEGNDE---DLFAHFSAIEMDGYKTLKAGQKVRFEVVQ 54


>gi|215426134|ref|ZP_03424053.1| cold shock protein B cspB [Mycobacterium tuberculosis T92]
          Length = 157

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+PDKG+GF++ EG    G+DV++  SA+ + G+  L  GQ V +      A+G+
Sbjct: 4  GKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPT-GVEALKAGQRVEFGI----ASGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|209519137|ref|ZP_03267942.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|209500437|gb|EEA00488.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT   S   G+D+F H S + S G  +L E Q V+++ ++   
Sbjct: 1  METGVVKWFNDAKGFGFIT---SDAGGEDLFAHFSEIRSEGFKSLKENQRVSFE-IKTSP 56

Query: 62 NGKYSA 67
           GK +A
Sbjct: 57 KGKQAA 62


>gi|108801761|ref|YP_641958.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          MCS]
 gi|118473705|ref|YP_890379.1| hypothetical protein MSMEG_6159 [Mycobacterium smegmatis str. MC2
          155]
 gi|119870912|ref|YP_940864.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          KMS]
 gi|126437748|ref|YP_001073439.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          JLS]
 gi|302595677|sp|A0R5E1|CSPA_MYCS2 RecName: Full=Probable cold shock protein A
 gi|9587215|gb|AAF89211.1|AF281675_1 cold-shock protein CspA [Mycobacterium smegmatis]
 gi|108772180|gb|ABG10902.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS]
 gi|118174992|gb|ABK75888.1| conserved domain protein [Mycobacterium smegmatis str. MC2 155]
 gi|119697001|gb|ABL94074.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS]
 gi|126237548|gb|ABO00949.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KG+GFI PE   +   DVF+H + +  +G   L E Q V ++  Q+
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQS 55


>gi|311107157|ref|YP_003980010.1| cold-shock DNA-binding domain-containing protein 2 [Achromobacter
          xylosoxidans A8]
 gi|310761846|gb|ADP17295.1| cold-shock DNA-binding domain protein 2 [Achromobacter
          xylosoxidans A8]
 gi|317405217|gb|EFV85556.1| cold shock-like protein [Achromobacter xylosoxidans C54]
          Length = 68

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI P+  ++   D+F H S + S G  +L E Q VT++ V     G 
Sbjct: 4  GIVKWFNAEKGYGFIMPDDGSK---DLFAHYSEIRSEGYKSLQENQRVTFE-VGTGPKGP 59

Query: 65 YSAENLKLV 73
           SA+N+K+ 
Sbjct: 60 -SAKNIKVA 67


>gi|269836302|ref|YP_003318530.1| cold-shock DNA-binding domain-containing protein [Sphaerobacter
          thermophilus DSM 20745]
 gi|269785565|gb|ACZ37708.1| cold-shock DNA-binding domain protein [Sphaerobacter thermophilus
          DSM 20745]
          Length = 77

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 8/52 (15%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KWY+P+KGYGFI    + + GD D+F+HRSA++ +    L EG  V +D
Sbjct: 4  GTVKWYDPEKGYGFI----ARDDGDSDLFVHRSAISGS---ELNEGDRVEFD 48


>gi|330958172|gb|EGH58432.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 101

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 2  VHRGSIKWYNPDKGYGFIT-------PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KW+N  KGYGFI        PE     GDD+F+H S +   G   +  GQ V +
Sbjct: 1  MKEGKVKWFNNAKGYGFINAKVNGKNPEKDEYGGDDLFVHFSTIEMEGYKTIKAGQKVIF 60

Query: 55 DYVQ 58
          D ++
Sbjct: 61 DIIE 64


>gi|296166503|ref|ZP_06848934.1| cold shock protein Csp [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295898115|gb|EFG77690.1| cold shock protein Csp [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P+G      DVF+H S +   G  +L E Q V ++  Q
Sbjct: 3  QGTVKWFNSEKGFGFIAPDGGAA---DVFVHYSEIQGNGYRSLEENQRVEFNVEQ 54


>gi|255319459|ref|ZP_05360673.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
 gi|262378517|ref|ZP_06071674.1| cold shock domain-containing protein CspD [Acinetobacter
          radioresistens SH164]
 gi|255303399|gb|EET82602.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
 gi|262299802|gb|EEY87714.1| cold shock domain-containing protein CspD [Acinetobacter
          radioresistens SH164]
          Length = 70

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI   G    GDDVF+H  A+   G  +L +GQ V +  V+     
Sbjct: 6  QGVVKWFNDTKGFGFIQRNG----GDDVFVHFRAIMGEGHRSLRDGQRVEFSVVKGQKG- 60

Query: 64 KYSAENLK 71
           + AE ++
Sbjct: 61 -FQAEEVQ 67


>gi|226330479|ref|ZP_03805997.1| hypothetical protein PROPEN_04397 [Proteus penneri ATCC 35198]
 gi|225201274|gb|EEG83628.1| hypothetical protein PROPEN_04397 [Proteus penneri ATCC 35198]
          Length = 70

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V++
Sbjct: 7  GTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDNFKTLAEGQQVSF 53


>gi|149908417|ref|ZP_01897080.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
 gi|149808580|gb|EDM68515.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
          Length = 68

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H SA+ S G   L E Q V ++    D    
Sbjct: 6  GTVKWFNETKGFGFI----QQENGPDVFAHFSAIESDGFRTLLENQKVEFNVT--DGQKG 59

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 60 PQAENIVVL 68


>gi|293606144|ref|ZP_06688509.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
          43553]
 gi|292815599|gb|EFF74715.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
          43553]
          Length = 68

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI P+  ++   D+F H S + S G  +L E Q VT++ V     G 
Sbjct: 4  GIVKWFNAEKGYGFIMPDDGSK---DLFAHYSEIRSEGYKSLQENQRVTFE-VGTGPKGP 59

Query: 65 YSAENLKLV 73
           SA+N+K+ 
Sbjct: 60 -SAKNIKVA 67


>gi|148822079|ref|YP_001286833.1| cold shock protein B cspB [Mycobacterium tuberculosis F11]
 gi|253800107|ref|YP_003033108.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 1435]
 gi|254231179|ref|ZP_04924506.1| cold shock-like protein B cspB [Mycobacterium tuberculosis C]
 gi|289555348|ref|ZP_06444558.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 605]
 gi|289744597|ref|ZP_06503975.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987]
 gi|298524364|ref|ZP_07011773.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|308397434|ref|ZP_07492504.2| putative cold-shock DNA-binding domain protein [Mycobacterium
          tuberculosis SUMu012]
 gi|124600238|gb|EAY59248.1| cold shock-like protein B cspB [Mycobacterium tuberculosis C]
 gi|148720606|gb|ABR05231.1| cold shock protein B cspB [Mycobacterium tuberculosis F11]
 gi|253321610|gb|ACT26213.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 1435]
 gi|289439980|gb|EFD22473.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 605]
 gi|289685125|gb|EFD52613.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987]
 gi|298494158|gb|EFI29452.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|308366919|gb|EFP55770.1| putative cold-shock DNA-binding domain protein [Mycobacterium
          tuberculosis SUMu012]
 gi|323720694|gb|EGB29771.1| cold shock protein B cspB [Mycobacterium tuberculosis CDC1551A]
 gi|328459845|gb|AEB05268.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 4207]
          Length = 138

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+PDKG+GF++ EG    G+DV++  SA+ + G+  L  GQ V +      A
Sbjct: 4  VPTGKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPT-GVEALKAGQRVEFGI----A 54

Query: 62 NGKYSAENLKL 72
          +G+   + L L
Sbjct: 55 SGRRGPQALSL 65


>gi|163783680|ref|ZP_02178668.1| cold shock protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881085|gb|EDP74601.1| cold shock protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 65

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +KW++ DKGYGFIT +   ++  DVF+H +A+   G   L +GQ V ++ ++ DA G
Sbjct: 1  VKWFSKDKGYGFITRD---DNEGDVFVHFTAIQKEGFKTLEQGQRVEFE-IEEDAKG 53


>gi|260768159|ref|ZP_05877093.1| cold shock protein CspD [Vibrio furnissii CIP 102972]
 gi|260616189|gb|EEX41374.1| cold shock protein CspD [Vibrio furnissii CIP 102972]
 gi|315179859|gb|ADT86773.1| cold shock-like protein CspD [Vibrio furnissii NCTC 11218]
          Length = 73

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG  E G D+F H S +   G   L  GQ V+Y+  Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIKMDGYRTLKAGQQVSYEVEQ 54


>gi|322435626|ref|YP_004217838.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321163353|gb|ADW69058.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 71

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 1  MVH-RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M H +G +KW+N  KG+GF+  EG      DVF H S++ + G  +L EG  V YD +  
Sbjct: 1  MAHFKGEVKWFNNAKGFGFLGREGEP----DVFCHYSSIQTDGYKSLKEGDKVEYDVILG 56

Query: 60 D 60
          D
Sbjct: 57 D 57


>gi|93006301|ref|YP_580738.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          cryohalolentis K5]
 gi|92393979|gb|ABE75254.1| cold-shock DNA-binding protein family [Psychrobacter
          cryohalolentis K5]
          Length = 71

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G +KW+N  KG+GFI      +SG+D+F+H  A+   G  +L +G+ V +  V+ D  
Sbjct: 5  EQGIVKWFNDSKGFGFI----QRDSGEDIFVHFRAIQGDGYRSLKDGEKVEFSVVEGDKG 60

Query: 63 GKYSAENLKLVPK 75
              AE ++ V +
Sbjct: 61 --LQAEEVRKVEE 71


>gi|94495604|ref|ZP_01302184.1| cold shock protein [Sphingomonas sp. SKA58]
 gi|94424992|gb|EAT10013.1| cold shock protein [Sphingomonas sp. SKA58]
          Length = 153

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI      +   D F+H SAV  AG+  L EG  + ++ ++ D  GK
Sbjct: 87  GTVKFFNAMKGFGFIQ---RDDGQPDAFVHISAVERAGMAALNEGDRLDFE-LEVDRRGK 142

Query: 65  YSAENLK 71
           Y+A NL+
Sbjct: 143 YAAVNLQ 149


>gi|117926359|ref|YP_866976.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
          MC-1]
 gi|117610115|gb|ABK45570.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
          Length = 70

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G++KW+N  KG+GFI  +G      D F+H SA+ + G  +L EGQ V +  V
Sbjct: 7  GTVKWFNDTKGFGFIERDGGK---GDAFVHHSAINATGFKSLAEGQKVEFTVV 56


>gi|42521032|ref|NP_966947.1| cold-shock domain-contain protein [Wolbachia endosymbiont of
          Drosophila melanogaster]
 gi|58698415|ref|ZP_00373326.1| cold-shock domain family protein [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|225630894|ref|YP_002727685.1| cold-shock domain family protein [Wolbachia sp. wRi]
 gi|225677316|ref|ZP_03788293.1| cold-shock domain family protein [Wolbachia endosymbiont of
          Muscidifurax uniraptor]
 gi|42410773|gb|AAS14881.1| cold-shock domain family protein [Wolbachia endosymbiont of
          Drosophila melanogaster]
 gi|58535070|gb|EAL59158.1| cold-shock domain family protein [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|225590643|gb|EEH11893.1| cold-shock domain family protein [Wolbachia endosymbiont of
          Muscidifurax uniraptor]
 gi|225592875|gb|ACN95894.1| cold-shock domain family protein [Wolbachia sp. wRi]
          Length = 83

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 16/81 (19%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----------NLTEGQLVTY 54
          G++KW+N +KGYGFI PEG    G DVF+H S +  +G+              +G+ V+Y
Sbjct: 4  GNVKWFNAEKGYGFIKPEG---KGGDVFVHISTLERSGIRPEALKGENKEKGIKGERVSY 60

Query: 55 DYVQNDA-NG--KYSAENLKL 72
          +  +    NG  K SA NL+L
Sbjct: 61 EVKEERGRNGEDKKSAINLRL 81


>gi|227355251|ref|ZP_03839653.1| CspA family cold shock transcriptional regulator [Proteus
          mirabilis ATCC 29906]
 gi|227164624|gb|EEI49491.1| CspA family cold shock transcriptional regulator [Proteus
          mirabilis ATCC 29906]
          Length = 66

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V++
Sbjct: 3  GTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDNFKTLAEGQQVSF 49


>gi|62421414|gb|AAX82482.1| cold shock protein [Bacillus thuringiensis serovar kurstaki]
          Length = 60

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          K +N +KG+GFI  EG    G+DVF+H SA+   G   L EGQ VT++  Q +
Sbjct: 3  KRFNSEKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN 51


>gi|256391893|ref|YP_003113457.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256358119|gb|ACU71616.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+  +KG+GFI      + G DVF H S +++ G   L EGQ V ++  Q+   G 
Sbjct: 4  GTVKWFKAEKGFGFIE---QDDGGPDVFAHFSNISAEGFRELLEGQRVEFEIAQS-PKGP 59

Query: 65 YSAENLKLV 73
          + AEN++ +
Sbjct: 60 H-AENIRPI 67


>gi|254514074|ref|ZP_05126135.1| cold shock protein [gamma proteobacterium NOR5-3]
 gi|219676317|gb|EED32682.1| cold shock protein [gamma proteobacterium NOR5-3]
          Length = 171

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI      E+GD++F+H  ++   G  +L +G  V Y  V  D
Sbjct: 108 GTVKWFNGTKGFGFII----RENGDEIFVHHRSIVGEGRRSLRDGAAVKYRVVTTD 159


>gi|322832238|ref|YP_004212265.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|321167439|gb|ADW73138.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
          Length = 70

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M+  G +KWYN  KGYGFI P +GS+E    +++ R+++A+ G  +L+ GQ V +   ++
Sbjct: 2  MLKMGLVKWYNQAKGYGFICPLDGSSE----IYVQRTSIANTGNKSLSAGQKVEFTTYRS 57

Query: 60 DANGKYSAE 68
            +G  +A+
Sbjct: 58 VTHGPSAAD 66


>gi|313157470|gb|EFR56889.1| cold shock-like protein CspE [Alistipes sp. HGB5]
          Length = 66

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW++  KGYGFIT     E+G ++F+H S + + G  +L EGQ V ++
Sbjct: 3  GKVKWFDSKKGYGFITG----ENGKEIFVHFSGIVTDGFKSLNEGQAVEFE 49


>gi|242239695|ref|YP_002987876.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
 gi|242131752|gb|ACS86054.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
          Length = 73

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PE   + G+D+F H S +   G   L  GQ+V +   Q
Sbjct: 4  GTVKWFNNAKGFGFICPE---DGGEDIFAHYSTIQMDGYRTLKAGQIVKFTVHQ 54


>gi|330943369|gb|EGH45738.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 41

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 29/38 (76%), Gaps = 3/38 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42
          G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G
Sbjct: 7  GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDG 41


>gi|295092996|emb|CBK82087.1| cold-shock DNA-binding protein family [Coprococcus sp. ART55/1]
          Length = 66

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KGYGFI      E G DVF+H SA+   G   L EG  V Y+ V  +
Sbjct: 4  GKVKWFNAKKGYGFICD----EDGADVFVHFSALNMEGFKVLEEGDTVEYEVVDGE 55


>gi|307730691|ref|YP_003907915.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1003]
 gi|323527027|ref|YP_004229180.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1001]
 gi|307585226|gb|ADN58624.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
 gi|323384029|gb|ADX56120.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT   S   G+D+F H S + + G  +L E Q V++D V+   
Sbjct: 1  METGIVKWFNDAKGFGFIT---SDSGGEDLFAHFSEIRTEGFKSLKENQRVSFD-VKAGP 56

Query: 62 NGKYSA 67
           GK +A
Sbjct: 57 KGKQAA 62


>gi|50955888|ref|YP_063176.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952370|gb|AAT90071.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 5  GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KGYGFI P +GS     DVF H   + + G   L E Q V Y+  Q
Sbjct: 4  GTVKWFNAEKGYGFIAPDDGSV----DVFAHFREIQTQGFRTLEENQKVEYELTQ 54


>gi|66359918|ref|XP_627137.1| cold shock RNA binding domain of the OB fold [Cryptosporidium
          parvum Iowa II]
 gi|46228824|gb|EAK89694.1| cold shock RNA binding domain of the OB fold [Cryptosporidium
          parvum Iowa II]
          Length = 135

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G  KW++  KG+GFITP+  +E   D+F+H+  +   G  +L + + V Y+ ++ D
Sbjct: 9  MPLSGVCKWFDSTKGFGFITPDDGSE---DIFVHQQNIKVEGFRSLAQDERVEYE-IETD 64

Query: 61 ANGKYSAENL 70
            G+  A N+
Sbjct: 65 DKGRRKAVNV 74


>gi|289749391|ref|ZP_06508769.1| LOW QUALITY PROTEIN: cold shock protein B cspB [Mycobacterium
          tuberculosis T92]
 gi|289689978|gb|EFD57407.1| LOW QUALITY PROTEIN: cold shock protein B cspB [Mycobacterium
          tuberculosis T92]
          Length = 136

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+PDKG+GF++ EG    G+DV++  SA+ + G+  L  GQ V +      A+G+
Sbjct: 4  GKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPT-GVEALKAGQRVEFGI----ASGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|209966917|ref|YP_002299832.1| cold shock-like protein CspA [Rhodospirillum centenum SW]
 gi|209960383|gb|ACJ01020.1| cold shock-like protein CspA [Rhodospirillum centenum SW]
          Length = 199

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           GS+KW+  DKG+GF+T   + + G DVF+H+S +  AGL +L  G+ V
Sbjct: 135 GSVKWFKDDKGFGFVT---TDDGGKDVFVHKSILRRAGLESLQSGERV 179



 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          R ++KW+N  KG+GF+ P   T    D FLH S ++  GL +L EG  V
Sbjct: 44 RATVKWFNGVKGFGFVAPADGTP---DAFLHASVLSRVGLSDLAEGAEV 89


>gi|91223648|ref|ZP_01258913.1| Cold shock protein [Vibrio alginolyticus 12G01]
 gi|91191734|gb|EAS77998.1| Cold shock protein [Vibrio alginolyticus 12G01]
          Length = 69

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI    S E+GDD+F+H  ++   G   L EG+ V++
Sbjct: 7  GTVKWFNETKGFGFI----SQENGDDLFVHFRSILGDGFKKLIEGEQVSF 52


>gi|268316772|ref|YP_003290491.1| cold-shock DNA-binding domain-containing protein [Rhodothermus
          marinus DSM 4252]
 gi|262334306|gb|ACY48103.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM
          4252]
          Length = 70

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 4/55 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55
          + +G++KW++ +KGYGFI  +G    G+DVF+HR+AVA  G    L +G+ ++++
Sbjct: 1  MSQGTVKWFSAEKGYGFIQQDG---GGEDVFVHRTAVAGLGYGEELRKGERLSFE 52


>gi|219123826|ref|XP_002182218.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406179|gb|EEC46119.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 286

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 4  RGSIKWYNPDKGYGFITPEG-STESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQNDA 61
          +G++KW++  KGYGF+ P   ++ + +++F+H++++ S G +  L E   + +D  +   
Sbjct: 5  QGTVKWFDSRKGYGFVAPTSDNSPTAEEIFVHQTSIQSEGAYRTLVENSEIEFDVEKEAE 64

Query: 62 NGKYSAENL 70
          +GK+ A N+
Sbjct: 65 SGKFKAINV 73


>gi|268590149|ref|ZP_06124370.1| cold-shock DNA-binding domain protein [Providencia rettgeri DSM
          1131]
 gi|291314424|gb|EFE54877.1| cold-shock DNA-binding domain protein [Providencia rettgeri DSM
          1131]
          Length = 71

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +H G +KW++  +GYGFI+P      GDDVF+   ++A+  + +L EGQ V +   +N
Sbjct: 5  LHMGRVKWFDAKEGYGFISP---FNGGDDVFVTTKSIANKKIKSLFEGQNVEFSVTRN 59


>gi|225022302|ref|ZP_03711494.1| hypothetical protein CORMATOL_02341 [Corynebacterium matruchotii
          ATCC 33806]
 gi|224944899|gb|EEG26108.1| hypothetical protein CORMATOL_02341 [Corynebacterium matruchotii
          ATCC 33806]
          Length = 73

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI PE  +    DVF+H S +   G   L E Q+V ++ V + A G
Sbjct: 8  KGAVKWFNAEKGFGFIEPEDGSA---DVFVHYSEINGDGFRYLEENQVVEFE-VGDGAKG 63

Query: 64 KYSAENLKLV 73
             A N++++
Sbjct: 64 T-QALNVRVI 72


>gi|299770874|ref|YP_003732900.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1]
 gi|298700962|gb|ADI91527.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1]
          Length = 71

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI     T+ G D+F H + + + G   L EGQ V +  VQ
Sbjct: 6  GTVKWFNETKGFGFIV----TDEGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQ 55


>gi|225874667|ref|YP_002756126.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793793|gb|ACO33883.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
          Length = 87

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI       +G+DVF+H SA+  +G   L EG+ V ++  Q
Sbjct: 24 GVVKWFNGAKGYGFI----QRSTGEDVFVHFSAIQDSGYKTLNEGEAVEFECQQ 73


>gi|194293032|ref|YP_002008939.1| cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
 gi|193226936|emb|CAQ72887.1| Cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+     GDD+F H S + + G  +L E Q V ++ V+N  
Sbjct: 1  MQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEIRAEGFKSLQENQRVQFE-VKNGP 56

Query: 62 NGKYSA 67
           G  +A
Sbjct: 57 KGLQAA 62


>gi|85859293|ref|YP_461495.1| cold shock protein [Syntrophus aciditrophicus SB]
 gi|85722384|gb|ABC77327.1| cold shock protein [Syntrophus aciditrophicus SB]
          Length = 66

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI      + G DVF+H S++  AG   L E Q V ++ +Q    G
Sbjct: 3  QGRVKWFNDKKGFGFI----ENDEGGDVFVHFSSIQGAGWKTLNESQRVRFE-IQQGQKG 57

Query: 64 KYSAENLKLV 73
            SA N++L+
Sbjct: 58 P-SAVNVELI 66


>gi|84385112|ref|ZP_00988144.1| cold shock DNA-binding domain protein [Vibrio splendidus 12B01]
 gi|86144296|ref|ZP_01062628.1| cold shock DNA-binding domain protein [Vibrio sp. MED222]
 gi|218676272|ref|YP_002395091.1| cold shock DNA-binding domain protein [Vibrio splendidus LGP32]
 gi|84379709|gb|EAP96560.1| cold shock DNA-binding domain protein [Vibrio splendidus 12B01]
 gi|85837195|gb|EAQ55307.1| cold shock DNA-binding domain protein [Vibrio sp. MED222]
 gi|218324540|emb|CAV26032.1| cold shock DNA-binding domain protein [Vibrio splendidus LGP32]
          Length = 69

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V +   Q
Sbjct: 7  GKVKWFNETKGFGFI----EQENGPDVFAHFSAITGDGFKTLAEGQQVEFTVSQ 56


>gi|300933731|ref|ZP_07148987.1| putative cold shock protein [Corynebacterium resistens DSM 45100]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI PE   +   DVF+H S +   G   L E Q V ++
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQKVEFE 51


>gi|38232941|ref|NP_938708.1| cold-shock protein [Corynebacterium diphtheriae NCTC 13129]
 gi|38199199|emb|CAE48825.1| cold-shock protein [Corynebacterium diphtheriae]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI PE   +   DVF+H S +   G   L E Q V ++
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQKVEFE 51


>gi|167966659|ref|ZP_02548936.1| cold shock protein B cspB [Mycobacterium tuberculosis H37Ra]
          Length = 75

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+PDKG+GF++ EG    G+DV++  SA+ + G+  LT GQ V +      A+G+
Sbjct: 4  GKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPT-GVEALTAGQRVEFGI----ASGR 54

Query: 65 YSAENLKL 72
               L L
Sbjct: 55 RGPHALSL 62


>gi|145589930|ref|YP_001156527.1| cold-shock DNA-binding domain-containing protein
          [Polynucleobacter necessarius subsp. asymbioticus
          QLW-P1DMWA-1]
 gi|171464060|ref|YP_001798173.1| cold-shock DNA-binding domain protein [Polynucleobacter
          necessarius subsp. necessarius STIR1]
 gi|145048336|gb|ABP34963.1| cold-shock DNA-binding protein family [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|171193598|gb|ACB44559.1| cold-shock DNA-binding domain protein [Polynucleobacter
          necessarius subsp. necessarius STIR1]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI P+   E   ++F H SA+   G   L E Q VT+D  Q
Sbjct: 4  GIVKWFNDAKGFGFIKPDDGEE---ELFAHFSAITMPGFKTLKENQKVTFDITQ 54


>gi|94500755|ref|ZP_01307284.1| cold-shock DNA-binding domain family protein [Oceanobacter sp.
          RED65]
 gi|94427077|gb|EAT12058.1| cold-shock DNA-binding domain family protein [Oceanobacter sp.
          RED65]
          Length = 68

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFI    + E+G DVF H S +   G   L EGQ V +   Q  
Sbjct: 6  GTVKWFNEAKGFGFI----AQENGPDVFAHFSEIQGEGFKTLAEGQAVEFIVTQGQ 57


>gi|117926184|ref|YP_866801.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
          MC-1]
 gi|117609940|gb|ABK45395.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
          Length = 71

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N DKG+GFI P+  ++   DVF H S ++S +G  +L EGQ V ++    D   
Sbjct: 7  GTVKWFNNDKGFGFIAPDNGSK---DVFAHFSEISSGSGFKSLEEGQKVEFNVEPGDKGP 63

Query: 64 K 64
          K
Sbjct: 64 K 64


>gi|307721642|ref|YP_003892782.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica
          DSM 16294]
 gi|306979735|gb|ADN09770.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica
          DSM 16294]
          Length = 72

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG--LFNLTEGQLVTYDYVQN 59
          +  G++KW+N DKG+GFI  E   + G DVF+H   +   G    +L EGQ VT++  Q 
Sbjct: 4  LQNGTVKWFNSDKGFGFIEVE---DGGKDVFVHYRQINDNGHSRVSLDEGQKVTFEIGQG 60

Query: 60 D 60
          D
Sbjct: 61 D 61


>gi|15608011|ref|NP_215386.1| cold shock-like protein B CspB [Mycobacterium tuberculosis H37Rv]
 gi|15840284|ref|NP_335321.1| cold-shock domain-contain protein [Mycobacterium tuberculosis
          CDC1551]
 gi|31792059|ref|NP_854552.1| cold shock-like protein B CspB [Mycobacterium bovis AF2122/97]
 gi|121636794|ref|YP_977017.1| putative cold shock-like protein B cspB [Mycobacterium bovis BCG
          str. Pasteur 1173P2]
 gi|148660648|ref|YP_001282171.1| cold-shock domain-contain protein [Mycobacterium tuberculosis
          H37Ra]
 gi|215402667|ref|ZP_03414848.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987]
 gi|215410456|ref|ZP_03419264.1| cold shock protein B cspB [Mycobacterium tuberculosis 94_M4241A]
 gi|215429728|ref|ZP_03427647.1| cold shock protein B cspB [Mycobacterium tuberculosis EAS054]
 gi|215445010|ref|ZP_03431762.1| cold shock protein B cspB [Mycobacterium tuberculosis T85]
 gi|218752536|ref|ZP_03531332.1| cold shock protein B cspB [Mycobacterium tuberculosis GM 1503]
 gi|219556733|ref|ZP_03535809.1| cold shock protein B cspB [Mycobacterium tuberculosis T17]
 gi|224989265|ref|YP_002643952.1| putative cold shock-like protein B [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|254549847|ref|ZP_05140294.1| cold shock protein B cspB [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|260199890|ref|ZP_05767381.1| cold shock protein B cspB [Mycobacterium tuberculosis T46]
 gi|260204068|ref|ZP_05771559.1| cold shock protein B cspB [Mycobacterium tuberculosis K85]
 gi|289442280|ref|ZP_06432024.1| cold shock protein B cspB [Mycobacterium tuberculosis T46]
 gi|289568834|ref|ZP_06449061.1| cold shock protein B cspB [Mycobacterium tuberculosis T17]
 gi|289573493|ref|ZP_06453720.1| cold shock protein B cspB [Mycobacterium tuberculosis K85]
 gi|289752926|ref|ZP_06512304.1| cold-shock protein B cspB [Mycobacterium tuberculosis EAS054]
 gi|289756956|ref|ZP_06516334.1| cold shock protein B cspB [Mycobacterium tuberculosis T85]
 gi|289761002|ref|ZP_06520380.1| cold shock-like protein B cspB [Mycobacterium tuberculosis GM
          1503]
 gi|294996351|ref|ZP_06802042.1| cold shock protein [Mycobacterium tuberculosis 210]
 gi|297633388|ref|ZP_06951168.1| cold shock protein [Mycobacterium tuberculosis KZN 4207]
 gi|297730373|ref|ZP_06959491.1| cold shock protein [Mycobacterium tuberculosis KZN R506]
 gi|306774995|ref|ZP_07413332.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu001]
 gi|306782090|ref|ZP_07420427.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu002]
 gi|306783539|ref|ZP_07421861.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu003]
 gi|306787904|ref|ZP_07426226.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu004]
 gi|306792245|ref|ZP_07430547.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu005]
 gi|306796643|ref|ZP_07434945.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu006]
 gi|306802530|ref|ZP_07439198.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu008]
 gi|306806712|ref|ZP_07443380.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu007]
 gi|306966908|ref|ZP_07479569.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu009]
 gi|306971103|ref|ZP_07483764.1| putative cold-shock DNA-binding domain protein [Mycobacterium
          tuberculosis SUMu010]
 gi|307078831|ref|ZP_07488001.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu011]
 gi|313657699|ref|ZP_07814579.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN V2475]
 gi|2916930|emb|CAA17677.1| PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB [Mycobacterium
          tuberculosis H37Rv]
 gi|13880445|gb|AAK45135.1| cold-shock domain family protein [Mycobacterium tuberculosis
          CDC1551]
 gi|31617646|emb|CAD93756.1| PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB [Mycobacterium bovis
          AF2122/97]
 gi|121492441|emb|CAL70909.1| Probable cold shock-like protein B cspB [Mycobacterium bovis BCG
          str. Pasteur 1173P2]
 gi|148504800|gb|ABQ72609.1| cold-shock domain family protein [Mycobacterium tuberculosis
          H37Ra]
 gi|224772378|dbj|BAH25184.1| putative cold shock-like protein B [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|289415199|gb|EFD12439.1| cold shock protein B cspB [Mycobacterium tuberculosis T46]
 gi|289537924|gb|EFD42502.1| cold shock protein B cspB [Mycobacterium tuberculosis K85]
 gi|289542588|gb|EFD46236.1| cold shock protein B cspB [Mycobacterium tuberculosis T17]
 gi|289693513|gb|EFD60942.1| cold-shock protein B cspB [Mycobacterium tuberculosis EAS054]
 gi|289708508|gb|EFD72524.1| cold shock-like protein B cspB [Mycobacterium tuberculosis GM
          1503]
 gi|289712520|gb|EFD76532.1| cold shock protein B cspB [Mycobacterium tuberculosis T85]
 gi|308216490|gb|EFO75889.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu001]
 gi|308325206|gb|EFP14057.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu002]
 gi|308331700|gb|EFP20551.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu003]
 gi|308335465|gb|EFP24316.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu004]
 gi|308339263|gb|EFP28114.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu005]
 gi|308342940|gb|EFP31791.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu006]
 gi|308346825|gb|EFP35676.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu007]
 gi|308350742|gb|EFP39593.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu008]
 gi|308355403|gb|EFP44254.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu009]
 gi|308359355|gb|EFP48206.1| putative cold-shock DNA-binding domain protein [Mycobacterium
          tuberculosis SUMu010]
 gi|308363262|gb|EFP52113.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu011]
 gi|326904909|gb|EGE51842.1| cold shock protein B cspB [Mycobacterium tuberculosis W-148]
          Length = 135

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+PDKG+GF++ EG    G+DV++  SA+ + G+  L  GQ V +      A+G+
Sbjct: 4  GKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPT-GVEALKAGQRVEFGI----ASGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|152979111|ref|YP_001344740.1| cold-shock DNA-binding domain-containing protein [Actinobacillus
          succinogenes 130Z]
 gi|150840834|gb|ABR74805.1| putative cold-shock DNA-binding domain protein [Actinobacillus
          succinogenes 130Z]
          Length = 69

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KG+GFI  EGS E   D+F H S +   G  +L  GQ V ++ +  D
Sbjct: 4  GVVKWFNNAKGFGFINAEGSDE---DIFAHFSVIEMDGYRSLKAGQKVNFEVIHGD 56


>gi|300782274|ref|YP_003762565.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
 gi|299791788|gb|ADJ42163.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
          Length = 67

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFITP+     G DVF+H S +   G  +L E   V ++  Q
Sbjct: 3  QGTVKWFNSEKGFGFITPD---NGGGDVFVHYSEIQGNGFKSLEENARVEFEIGQ 54


>gi|90021330|ref|YP_527157.1| cold-shock DNA-binding protein family protein [Saccharophagus
          degradans 2-40]
 gi|89950930|gb|ABD80945.1| cold-shock DNA-binding protein family [Saccharophagus degradans
          2-40]
          Length = 89

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 7/76 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+     G+D+F H S++   G   L  GQ VT++  + D    
Sbjct: 4  GTVKWFNNAKGFGFILPDA---GGEDLFAHYSSIEMEGYRTLKAGQPVTFEIEKGDKG-- 58

Query: 65 YSAENLKL--VPKSSN 78
            A+N++   +P++S 
Sbjct: 59 LHAKNIQCTDLPETSE 74


>gi|68537049|ref|YP_251754.1| putative cold shock protein [Corynebacterium jeikeium K411]
 gi|260579394|ref|ZP_05847276.1| cold shock protein [Corynebacterium jeikeium ATCC 43734]
 gi|68264648|emb|CAI38136.1| putative cold shock protein [Corynebacterium jeikeium K411]
 gi|258602523|gb|EEW15818.1| cold shock protein [Corynebacterium jeikeium ATCC 43734]
          Length = 67

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI P+   +   DVF+H S +  +G   L E Q V ++
Sbjct: 3  QGTVKWFNAEKGFGFIAPD---DGSSDVFVHYSEIQGSGFRTLEENQKVEFE 51


>gi|325003541|ref|ZP_08124653.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          sp. P1]
          Length = 67

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI    + + G DVF+H SA+ + G   L E Q V +   Q
Sbjct: 3  QGTVKWFNAEKGFGFI---ATDDEGPDVFVHYSAIEANGFRTLEENQRVDFQSSQ 54


>gi|330830328|ref|YP_004393280.1| Cold shock-like protein cspE [Aeromonas veronii B565]
 gi|328805464|gb|AEB50663.1| Cold shock-like protein cspE [Aeromonas veronii B565]
          Length = 66

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFI      E+G DVF+H SA+   G   L EGQ V +   Q     +
Sbjct: 4  GTVKFFNETKGFGFI----QQENGPDVFVHFSAIQGNGFRTLAEGQRVQFSVTQGQKGPQ 59

Query: 65 YSAENL 70
            AEN+
Sbjct: 60 --AENV 63


>gi|212709797|ref|ZP_03317925.1| hypothetical protein PROVALCAL_00845 [Providencia alcalifaciens
          DSM 30120]
 gi|212687608|gb|EEB47136.1| hypothetical protein PROVALCAL_00845 [Providencia alcalifaciens
          DSM 30120]
          Length = 71

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +H G +KW++  +GYGFI+P      GDD+F+   ++A+  + +L EGQ V +   +N
Sbjct: 5  LHMGRVKWFDAKEGYGFISPR---NGGDDIFVTTKSLANKKIKSLFEGQNVEFSVTRN 59


>gi|187477996|ref|YP_786020.1| cold shock-like protein [Bordetella avium 197N]
 gi|115422582|emb|CAJ49107.1| cold shock-like protein [Bordetella avium 197N]
          Length = 68

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI P+   + G D+F H S + S G  +L E Q V+++  +      
Sbjct: 4  GIVKWFNAEKGYGFILPD---DGGKDLFAHYSEIRSEGYKSLQENQRVSFEIGEGPKGP- 59

Query: 65 YSAENLKLV 73
           SA+++K++
Sbjct: 60 -SAKDIKVI 67


>gi|107102143|ref|ZP_01366061.1| hypothetical protein PaerPA_01003193 [Pseudomonas aeruginosa
          PACS2]
          Length = 92

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  EG  E   D+F H SA+   G   L  GQ V ++ +Q
Sbjct: 6  GKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQ 56


>gi|18310224|ref|NP_562158.1| cold shock protein [Clostridium perfringens str. 13]
 gi|110798743|ref|YP_695895.1| cold shock protein [Clostridium perfringens ATCC 13124]
 gi|168205487|ref|ZP_02631492.1| cold shock protein [Clostridium perfringens E str. JGS1987]
 gi|168209633|ref|ZP_02635258.1| cold shock protein [Clostridium perfringens B str. ATCC 3626]
 gi|168213057|ref|ZP_02638682.1| cold shock protein [Clostridium perfringens CPE str. F4969]
 gi|168217114|ref|ZP_02642739.1| cold shock protein [Clostridium perfringens NCTC 8239]
 gi|169343961|ref|ZP_02864952.1| cold shock protein [Clostridium perfringens C str. JGS1495]
 gi|18144903|dbj|BAB80948.1| cold shock protein [Clostridium perfringens str. 13]
 gi|110673390|gb|ABG82377.1| cold shock protein [Clostridium perfringens ATCC 13124]
 gi|169297869|gb|EDS79964.1| cold shock protein [Clostridium perfringens C str. JGS1495]
 gi|170663060|gb|EDT15743.1| cold shock protein [Clostridium perfringens E str. JGS1987]
 gi|170712262|gb|EDT24444.1| cold shock protein [Clostridium perfringens B str. ATCC 3626]
 gi|170715408|gb|EDT27590.1| cold shock protein [Clostridium perfringens CPE str. F4969]
 gi|182380855|gb|EDT78334.1| cold shock protein [Clostridium perfringens NCTC 8239]
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 5/57 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          G +KW+N +KGYGFI    S + GDDVF+H S V   G   +L EG+ V++D  + +
Sbjct: 6  GIVKWFNQEKGYGFI----SCDEGDDVFVHISQVKEKGPEKDLHEGESVSFDISEGE 58


>gi|197284583|ref|YP_002150455.1| cold shock-like protein [Proteus mirabilis HI4320]
 gi|227356765|ref|ZP_03841150.1| cold shock family protein [Proteus mirabilis ATCC 29906]
 gi|194682070|emb|CAR41608.1| cold shock-like protein [Proteus mirabilis HI4320]
 gi|227163055|gb|EEI47990.1| cold shock family protein [Proteus mirabilis ATCC 29906]
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP      G+D+F H S++   G   L  GQ V Y  ++
Sbjct: 4  GTVKWFNNAKGFGFITP---AAGGEDIFAHYSSIRMEGYRTLKAGQKVNYSTIK 54


>gi|67602636|ref|XP_666494.1| glycogen debranching enzyme [Cryptosporidium hominis TU502]
 gi|54657499|gb|EAL36263.1| glycogen debranching enzyme [Cryptosporidium hominis]
          Length = 127

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G  KW++  KG+GFITP+  +E   D+F+H+  +   G  +L + + V Y+ ++ D
Sbjct: 1  MPLSGVCKWFDSTKGFGFITPDDGSE---DIFVHQQNIKVEGFRSLAQDERVEYE-IETD 56

Query: 61 ANGKYSAENL 70
            G+  A N+
Sbjct: 57 DKGRRKAVNV 66


>gi|260914143|ref|ZP_05920616.1| cold shock domain protein CspD [Pasteurella dagmatis ATCC 43325]
 gi|260631776|gb|EEX49954.1| cold shock domain protein CspD [Pasteurella dagmatis ATCC 43325]
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI+ EGS     D+F H S +   G  +L  GQ V ++ V  D    
Sbjct: 4  GVVKWFNNAKGFGFISAEGSDA---DIFAHYSVIEMEGYRSLKAGQKVQFEVVHGDKG-- 58

Query: 65 YSAENLKLVP 74
            +   K+VP
Sbjct: 59 --SHATKIVP 66


>gi|291616885|ref|YP_003519627.1| CspD [Pantoea ananatis LMG 20103]
 gi|291151915|gb|ADD76499.1| CspD [Pantoea ananatis LMG 20103]
 gi|327393313|dbj|BAK10735.1| cold shock-like protein CspD [Pantoea ananatis AJ13355]
          Length = 100

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI P G    G+D+F H S +   G   L  GQ V +D  Q
Sbjct: 30 GTVKWFNNAKGFGFICPIG---GGEDIFAHYSTIQMDGYRTLKAGQQVHFDVHQ 80


>gi|78777701|ref|YP_394016.1| cold-shock DNA-binding domain-containing protein [Sulfurimonas
          denitrificans DSM 1251]
 gi|78498241|gb|ABB44781.1| cold-shock DNA-binding protein family [Sulfurimonas denitrificans
          DSM 1251]
          Length = 72

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV--ASAGLFNLTEGQLVTYD 55
          GS+KW+N +KGYGFI  E     G DVF+H   V     G  +L+EGQ VT++
Sbjct: 7  GSVKWFNEEKGYGFIQQE---NGGKDVFVHFRQVNRTGPGRVSLSEGQKVTFE 56


>gi|322832164|ref|YP_004212191.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|321167365|gb|ADW73064.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
          Length = 73

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++KW+N  KG+GFI P+     G+D+F H S +   G   L  GQ V +D
Sbjct: 1  MQTGTVKWFNNAKGFGFICPQ---NGGEDIFAHYSTIQMEGYRTLKAGQQVNFD 51


>gi|152988646|ref|YP_001347949.1| cold shock domain-containing protein CspD [Pseudomonas aeruginosa
          PA7]
 gi|150963804|gb|ABR85829.1| cold shock domain protein CspD [Pseudomonas aeruginosa PA7]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  EG  E   D+F H SA+   G   L  GQ V ++ +Q
Sbjct: 4  GKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQ 54


>gi|320333865|ref|YP_004170576.1| cold-shock DNA-binding domain-containing protein [Deinococcus
          maricopensis DSM 21211]
 gi|319755154|gb|ADV66911.1| cold-shock DNA-binding domain protein [Deinococcus maricopensis
          DSM 21211]
          Length = 86

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI   GS     DVF H SA+   G   L EG  V +D  +      
Sbjct: 4  GKVKWFNAEKGFGFIEVAGSP----DVFAHFSAIKGTGFKKLNEGDEVEFDIEEGQRGKG 59

Query: 65 YSAENL---KLVPKS 76
            A N+   K  P+S
Sbjct: 60 PQAANIVVTKAAPES 74


>gi|187925052|ref|YP_001896694.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|187716246|gb|ACD17470.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
          Length = 67

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S + + G  +L E Q V++D V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDSGGEDLFAHFSEIRAEGFKSLKENQRVSFD-VKAGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|190014803|ref|YP_001967567.1| orf_Bo170 [Agrobacterium tumefaciens]
 gi|71849606|gb|AAZ50554.1| orf_Bo170 [Agrobacterium tumefaciens]
          Length = 100

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  K +GFITP+   + G DVFLH S++A      L  G  + Y   Q    GK
Sbjct: 4  GKVKWFDAAKRFGFITPD---DGGPDVFLHLSSIADPACPTLQPGLRLHYGVQQK--GGK 58

Query: 65 YSAENLKLVP 74
           +A+++  VP
Sbjct: 59 VTAKDVGPVP 68


>gi|148379362|ref|YP_001253903.1| major cold shock protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931072|ref|YP_001383738.1| major cold shock protein [Clostridium botulinum A str. ATCC
          19397]
 gi|153936819|ref|YP_001387287.1| major cold shock protein [Clostridium botulinum A str. Hall]
 gi|153940797|ref|YP_001390748.1| major cold shock protein [Clostridium botulinum F str. Langeland]
 gi|168180058|ref|ZP_02614722.1| major cold shock protein [Clostridium botulinum NCTC 2916]
 gi|170756947|ref|YP_001781039.1| major cold shock protein [Clostridium botulinum B1 str. Okra]
 gi|170760431|ref|YP_001786775.1| major cold shock protein [Clostridium botulinum A3 str. Loch
          Maree]
 gi|226948665|ref|YP_002803756.1| major cold shock protein [Clostridium botulinum A2 str. Kyoto]
 gi|148288846|emb|CAL82930.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
 gi|152927116|gb|ABS32616.1| major cold shock protein CspA [Clostridium botulinum A str. ATCC
          19397]
 gi|152932733|gb|ABS38232.1| major cold shock protein CspA [Clostridium botulinum A str. Hall]
 gi|152936693|gb|ABS42191.1| major cold shock protein [Clostridium botulinum F str. Langeland]
 gi|169122159|gb|ACA45995.1| major cold shock protein CspA [Clostridium botulinum B1 str.
          Okra]
 gi|169407420|gb|ACA55831.1| major cold shock protein CspA [Clostridium botulinum A3 str. Loch
          Maree]
 gi|182669023|gb|EDT80999.1| major cold shock protein [Clostridium botulinum NCTC 2916]
 gi|226843516|gb|ACO86182.1| major cold shock protein [Clostridium botulinum A2 str. Kyoto]
 gi|295318821|gb|ADF99198.1| major cold shock protein [Clostridium botulinum F str. 230613]
          Length = 67

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N +KG+GFI  EG      DVF+H SA+       NL EGQ V ++ V+    G
Sbjct: 4  GTVKWFNSEKGFGFIEVEGEK----DVFVHFSAIQGDEPRKNLEEGQKVQFE-VEEGQKG 58

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 59 PQAANVIKL 67


>gi|15233440|ref|NP_195326.1| CSDP1 (cold shock domain protein 1); RNA binding /
          double-stranded DNA binding / nucleic acid binding /
          single-stranded DNA binding [Arabidopsis thaliana]
 gi|3036806|emb|CAA18496.1| glycine-rich protein [Arabidopsis thaliana]
 gi|7270554|emb|CAB81511.1| glycine-rich protein [Arabidopsis thaliana]
 gi|110741941|dbj|BAE98911.1| glycine-rich protein [Arabidopsis thaliana]
 gi|332661203|gb|AEE86603.1| cellular nucleic acid-binding protein [Arabidopsis thaliana]
          Length = 299

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 6/67 (8%)

Query: 5  GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G + W+N  KGYGFITP +GS E    +F+H+S++ S G  +LT G  V +   Q  ++G
Sbjct: 13 GKVNWFNASKGYGFITPDDGSVE----LFVHQSSIVSEGYRSLTVGDAVEFAITQG-SDG 67

Query: 64 KYSAENL 70
          K  A N+
Sbjct: 68 KTKAVNV 74


>gi|15641155|ref|NP_230787.1| cold shock-like protein CspD [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121587431|ref|ZP_01677200.1| cold shock-like protein CspD [Vibrio cholerae 2740-80]
 gi|121726283|ref|ZP_01679573.1| cold shock-like protein CspD [Vibrio cholerae V52]
 gi|147674134|ref|YP_001216662.1| cold shock-like protein CspD [Vibrio cholerae O395]
 gi|153214227|ref|ZP_01949262.1| cold shock-like protein CspD [Vibrio cholerae 1587]
 gi|153802582|ref|ZP_01957168.1| cold shock-like protein CspD [Vibrio cholerae MZO-3]
 gi|153816958|ref|ZP_01969625.1| cold shock-like protein CspD [Vibrio cholerae NCTC 8457]
 gi|153822008|ref|ZP_01974675.1| cold shock-like protein CspD [Vibrio cholerae B33]
 gi|153826040|ref|ZP_01978707.1| cold shock-like protein CspD [Vibrio cholerae MZO-2]
 gi|153828664|ref|ZP_01981331.1| cold shock-like protein CspD [Vibrio cholerae 623-39]
 gi|227081315|ref|YP_002809866.1| cold shock-like protein CspD [Vibrio cholerae M66-2]
 gi|254291567|ref|ZP_04962357.1| cold shock-like protein CspD [Vibrio cholerae AM-19226]
 gi|254848270|ref|ZP_05237620.1| cold shock-like protein CspD [Vibrio cholerae MO10]
 gi|297578744|ref|ZP_06940672.1| predicted protein [Vibrio cholerae RC385]
 gi|298498753|ref|ZP_07008560.1| cold shock domain-containing protein CspD [Vibrio cholerae MAK
          757]
 gi|20138015|sp|Q9KSW4|CSPD_VIBCH RecName: Full=Cold shock-like protein CspD
 gi|9655615|gb|AAF94301.1| cold shock-like protein CspD [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121548351|gb|EAX58415.1| cold shock-like protein CspD [Vibrio cholerae 2740-80]
 gi|121631229|gb|EAX63602.1| cold shock-like protein CspD [Vibrio cholerae V52]
 gi|124115476|gb|EAY34296.1| cold shock-like protein CspD [Vibrio cholerae 1587]
 gi|124121896|gb|EAY40639.1| cold shock-like protein CspD [Vibrio cholerae MZO-3]
 gi|126512545|gb|EAZ75139.1| cold shock-like protein CspD [Vibrio cholerae NCTC 8457]
 gi|126520473|gb|EAZ77696.1| cold shock-like protein CspD [Vibrio cholerae B33]
 gi|146316017|gb|ABQ20556.1| cold shock-like protein CspD [Vibrio cholerae O395]
 gi|148875817|gb|EDL73952.1| cold shock-like protein CspD [Vibrio cholerae 623-39]
 gi|149740260|gb|EDM54407.1| cold shock-like protein CspD [Vibrio cholerae MZO-2]
 gi|150422519|gb|EDN14476.1| cold shock-like protein CspD [Vibrio cholerae AM-19226]
 gi|227009203|gb|ACP05415.1| cold shock-like protein CspD [Vibrio cholerae M66-2]
 gi|227013009|gb|ACP09219.1| cold shock-like protein CspD [Vibrio cholerae O395]
 gi|254843975|gb|EET22389.1| cold shock-like protein CspD [Vibrio cholerae MO10]
 gi|297536338|gb|EFH75171.1| predicted protein [Vibrio cholerae RC385]
 gi|297543086|gb|EFH79136.1| cold shock domain-containing protein CspD [Vibrio cholerae MAK
          757]
          Length = 76

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG  E G D+F H S +   G   L  GQ V+Y   Q
Sbjct: 7  GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMDGYRTLKAGQQVSYQVEQ 57


>gi|302875711|ref|YP_003844344.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307689143|ref|ZP_07631589.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302578568|gb|ADL52580.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans
          743B]
          Length = 68

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N +KG+GFI  EG     +DVF+H SA+ S +   NL EG+ V ++ V+    G
Sbjct: 4  GTVKWFNQEKGFGFIEVEGE----NDVFVHFSAIQSDSPRKNLEEGEKVEFE-VEQGPKG 58

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 59 LQAANVVKL 67


>gi|254241055|ref|ZP_04934377.1| cold-shock protein CspD [Pseudomonas aeruginosa 2192]
 gi|126194433|gb|EAZ58496.1| cold-shock protein CspD [Pseudomonas aeruginosa 2192]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  EG  E   D+F H SA+   G   L  GQ V ++ +Q
Sbjct: 4  GKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQ 54


>gi|15597818|ref|NP_251312.1| cold-shock protein CspD [Pseudomonas aeruginosa PAO1]
 gi|116050609|ref|YP_790572.1| cold-shock protein CspD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891217|ref|YP_002440083.1| cold-shock protein CspD [Pseudomonas aeruginosa LESB58]
 gi|254235608|ref|ZP_04928931.1| cold-shock protein CspD [Pseudomonas aeruginosa C3719]
 gi|296388918|ref|ZP_06878393.1| cold-shock protein CspD [Pseudomonas aeruginosa PAb1]
 gi|313107659|ref|ZP_07793842.1| cold-shock protein CspD [Pseudomonas aeruginosa 39016]
 gi|9948689|gb|AAG06010.1|AE004691_1 cold-shock protein CspD [Pseudomonas aeruginosa PAO1]
 gi|115585830|gb|ABJ11845.1| cold-shock protein CspD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167539|gb|EAZ53050.1| cold-shock protein CspD [Pseudomonas aeruginosa C3719]
 gi|218771442|emb|CAW27209.1| cold-shock protein CspD [Pseudomonas aeruginosa LESB58]
 gi|310880344|gb|EFQ38938.1| cold-shock protein CspD [Pseudomonas aeruginosa 39016]
          Length = 90

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  EG  E   D+F H SA+   G   L  GQ V ++ +Q
Sbjct: 4  GKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQ 54


>gi|311695726|gb|ADP98599.1| cold shock, CspA [marine bacterium HP15]
          Length = 68

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++K++N  KG+GFIT EG    G DVF+H S +   G   L EGQ V +   Q
Sbjct: 6  GNVKFFNEAKGFGFITREG----GADVFVHYSNIQGGGFKTLAEGQEVEFTVTQ 55


>gi|288959293|ref|YP_003449634.1| cold shock protein [Azospirillum sp. B510]
 gi|288911601|dbj|BAI73090.1| cold shock protein [Azospirillum sp. B510]
          Length = 245

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KGYGF  P+   + G DVF+   A+ SAGL  L +GQ V     Q +
Sbjct: 182 GTVKWFNGGKGYGFAQPD---DGGRDVFIPARALESAGLRGLDDGQRVRMTVRQTE 234



 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          ++KW+NP++GYGF+      +SG D  L  S V  AG   L +G  V  D V++
Sbjct: 23 TVKWFNPERGYGFVK---VGDSGKDALLPASIVVPAGHTTLPDGATVVVDIVED 73


>gi|148652578|ref|YP_001279671.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          sp. PRwf-1]
 gi|148571662|gb|ABQ93721.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1]
          Length = 71

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 4/52 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           +G++KW+N  KG+GFI      ESG+D+F+H  A+   G  +L +GQ V +
Sbjct: 5  EQGTVKWFNDAKGFGFI----QRESGEDIFVHFRAIQGDGYRSLQDGQKVEF 52


>gi|332978230|gb|EGK14961.1| cold shock protein CspA [Psychrobacter sp. 1501(2011)]
          Length = 71

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 4/52 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           +G++KW+N  KG+GFI      ESG+D+F+H  A+   G  +L +GQ V +
Sbjct: 5  EQGTVKWFNDAKGFGFI----QRESGEDIFVHFRAIQGDGYRSLQDGQKVEF 52


>gi|330937547|gb|EGH41489.1| cold shock protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 40

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 29/38 (76%), Gaps = 4/38 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42
          G++KW+N +KG+GFITP    +SGDD+F+H  A+ S G
Sbjct: 7  GTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDG 40


>gi|168184293|ref|ZP_02618957.1| major cold shock protein [Clostridium botulinum Bf]
 gi|187779961|ref|ZP_02996434.1| hypothetical protein CLOSPO_03557 [Clostridium sporogenes ATCC
          15579]
 gi|237794738|ref|YP_002862290.1| major cold shock protein CspA [Clostridium botulinum Ba4 str.
          657]
 gi|182672649|gb|EDT84610.1| major cold shock protein [Clostridium botulinum Bf]
 gi|187773586|gb|EDU37388.1| hypothetical protein CLOSPO_03557 [Clostridium sporogenes ATCC
          15579]
 gi|229263133|gb|ACQ54166.1| major cold shock protein CspA [Clostridium botulinum Ba4 str.
          657]
          Length = 67

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N +KG+GFI  EG      DVF+H SA+       NL EGQ V ++ V+    G
Sbjct: 4  GTVKWFNSEKGFGFIEVEGEK----DVFVHFSAIQGDEPRKNLEEGQKVEFE-VEEGQKG 58

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 59 PQAANVIKL 67


>gi|148977558|ref|ZP_01814137.1| cold shock-like protein CspD [Vibrionales bacterium SWAT-3]
 gi|145963209|gb|EDK28476.1| cold shock-like protein CspD [Vibrionales bacterium SWAT-3]
          Length = 73

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PEG  E G D+F H S +   G   L  GQ V Y+ V++   G 
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EEG-DIFAHYSTIQMEGYRTLKAGQQVDYE-VESGPKGS 59

Query: 65 YSA 67
          +++
Sbjct: 60 HAS 62


>gi|85710988|ref|ZP_01042049.1| Cold shock protein [Idiomarina baltica OS145]
 gi|85695392|gb|EAQ33329.1| Cold shock protein [Idiomarina baltica OS145]
          Length = 68

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +K++N  KG+GFI      E+G DVF+H SA+ + G   L EGQ V++   Q
Sbjct: 6  GKVKFFNEAKGFGFI----EQENGADVFVHFSAIQADGFKTLAEGQQVSFTVAQ 55


>gi|154508286|ref|ZP_02043928.1| hypothetical protein ACTODO_00782 [Actinomyces odontolyticus ATCC
          17982]
 gi|293194037|ref|ZP_06609919.1| putative cold shock protein [Actinomyces odontolyticus F0309]
 gi|153797920|gb|EDN80340.1| hypothetical protein ACTODO_00782 [Actinomyces odontolyticus ATCC
          17982]
 gi|292819791|gb|EFF78800.1| putative cold shock protein [Actinomyces odontolyticus F0309]
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 4/55 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRS-AVASAGLFNLTEGQLVTYDYVQ 58
          G+IKW+N  KG+GFITP+   ESG DVF+H S  +  +G   L EG+ V Y+ ++
Sbjct: 4  GTIKWFNDAKGFGFITPD--DESG-DVFVHYSNIIGQSGRRTLLEGEKVEYEAIE 55


>gi|262369668|ref|ZP_06062996.1| cold-shock domain-containing protein [Acinetobacter johnsonii
          SH046]
 gi|262315736|gb|EEY96775.1| cold-shock domain-containing protein [Acinetobacter johnsonii
          SH046]
          Length = 70

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI   G    GDDVF+H  A+   G  +L +GQ V +  V+     
Sbjct: 6  QGVVKWFNDTKGFGFIQRNG----GDDVFVHFRAIQGDGHRSLRDGQRVEFSVVKGQKG- 60

Query: 64 KYSAENLK 71
           + AE ++
Sbjct: 61 -FQAEEVQ 67


>gi|219855908|ref|YP_002473030.1| hypothetical protein CKR_2565 [Clostridium kluyveri NBRC 12016]
 gi|219569632|dbj|BAH07616.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 66

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++  G++KW+N +KG+G IT E     G D+F H S + S G   L EGQ V++D
Sbjct: 15 LIWTGTVKWFNGNKGFGSITGE----DGKDIFAHFSQINSEGYKTLGEGQKVSFD 65


>gi|254458182|ref|ZP_05071608.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales
          bacterium GD 1]
 gi|207085018|gb|EDZ62304.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales
          bacterium GD 1]
          Length = 72

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV--ASAGLFNLTEGQLVTYD 55
          GS+KW+N +KGYGFI  +     G DVF+H   V     G  +L EGQ VTY+
Sbjct: 7  GSVKWFNEEKGYGFIQQD---NGGQDVFVHFRQVNHTGGGRVSLAEGQKVTYE 56


>gi|251791888|ref|YP_003006608.1| cold-shock DNA-binding domain-containing protein [Aggregatibacter
          aphrophilus NJ8700]
 gi|247533275|gb|ACS96521.1| cold-shock DNA-binding domain protein [Aggregatibacter
          aphrophilus NJ8700]
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   T+   DVF+H S +       L EG  V Y+ VQ+   G 
Sbjct: 6  GTVKWFNSTKGFGFIAPADGTK---DVFVHFSGIVGNNFRTLNEGDRVAYN-VQDSQRGP 61

Query: 65 YSAE 68
           + E
Sbjct: 62 TAVE 65


>gi|303289687|ref|XP_003064131.1| highly cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
 gi|226454447|gb|EEH51753.1| highly cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
          Length = 325

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 5/58 (8%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           D+G+GFITP+G    G+DVF H SA+    +  L+EG  V YD   +D  GK  AEN+
Sbjct: 84  DRGFGFITPDG---GGEDVFCHFSAIKDGNM--LSEGSRVDYDESFDDRKGKPRAENV 136


>gi|71083183|ref|YP_265902.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762387|ref|ZP_01264352.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062296|gb|AAZ21299.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718189|gb|EAS84839.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1002]
          Length = 70

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  E   +   D F+H SAV +AG+  L EG  + ++    D   
Sbjct: 5  KGTVKWFNGKKGFGFIEREDKEK---DAFVHASAVKTAGMRFLNEGDKLEFE--MEDGPK 59

Query: 64 KYSAENLKLV 73
            SA NLK +
Sbjct: 60 GPSAVNLKKI 69


>gi|262376304|ref|ZP_06069534.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
 gi|262308905|gb|EEY90038.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
          Length = 71

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI   G    GDDVF+H  A+   G  +L +GQ V +  V+     
Sbjct: 7  QGVVKWFNDTKGFGFIQRNG----GDDVFVHFRAIQGDGHRSLRDGQRVEFSVVKGQKG- 61

Query: 64 KYSAENLK 71
           + AE ++
Sbjct: 62 -FQAEEVQ 68


>gi|229505263|ref|ZP_04394773.1| cold shock protein CspD [Vibrio cholerae BX 330286]
 gi|229511067|ref|ZP_04400546.1| cold shock protein CspD [Vibrio cholerae B33]
 gi|229515525|ref|ZP_04404984.1| cold shock protein CspD [Vibrio cholerae TMA 21]
 gi|229518187|ref|ZP_04407631.1| cold shock protein CspD [Vibrio cholerae RC9]
 gi|229520428|ref|ZP_04409853.1| cold shock protein CspD [Vibrio cholerae TM 11079-80]
 gi|229525753|ref|ZP_04415158.1| cold shock protein CspD [Vibrio cholerae bv. albensis VL426]
 gi|229529769|ref|ZP_04419159.1| cold shock protein CspD [Vibrio cholerae 12129(1)]
 gi|229608282|ref|YP_002878930.1| cold shock protein CspD [Vibrio cholerae MJ-1236]
 gi|255745554|ref|ZP_05419502.1| cold shock protein CspD [Vibrio cholera CIRS 101]
 gi|262158372|ref|ZP_06029488.1| cold shock protein CspD [Vibrio cholerae INDRE 91/1]
 gi|262170184|ref|ZP_06037872.1| cold shock protein CspD [Vibrio cholerae RC27]
 gi|229333543|gb|EEN99029.1| cold shock protein CspD [Vibrio cholerae 12129(1)]
 gi|229339334|gb|EEO04351.1| cold shock protein CspD [Vibrio cholerae bv. albensis VL426]
 gi|229342526|gb|EEO07519.1| cold shock protein CspD [Vibrio cholerae TM 11079-80]
 gi|229344902|gb|EEO09876.1| cold shock protein CspD [Vibrio cholerae RC9]
 gi|229347294|gb|EEO12254.1| cold shock protein CspD [Vibrio cholerae TMA 21]
 gi|229351032|gb|EEO15973.1| cold shock protein CspD [Vibrio cholerae B33]
 gi|229357486|gb|EEO22403.1| cold shock protein CspD [Vibrio cholerae BX 330286]
 gi|229370937|gb|ACQ61360.1| cold shock protein CspD [Vibrio cholerae MJ-1236]
 gi|255736629|gb|EET92026.1| cold shock protein CspD [Vibrio cholera CIRS 101]
 gi|262021353|gb|EEY40066.1| cold shock protein CspD [Vibrio cholerae RC27]
 gi|262029813|gb|EEY48461.1| cold shock protein CspD [Vibrio cholerae INDRE 91/1]
 gi|327483846|gb|AEA78253.1| Cold shock protein CspD [Vibrio cholerae LMA3894-4]
          Length = 73

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG  E G D+F H S +   G   L  GQ V+Y   Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMDGYRTLKAGQQVSYQVEQ 54


>gi|15827003|ref|NP_301266.1| cold shock protein [Mycobacterium leprae TN]
 gi|118619394|ref|YP_907726.1| cold shock protein A CspA_1 [Mycobacterium ulcerans Agy99]
 gi|183985108|ref|YP_001853399.1| cold shock protein A CspA_1 [Mycobacterium marinum M]
 gi|221229481|ref|YP_002502897.1| putative cold shock protein [Mycobacterium leprae Br4923]
 gi|296166704|ref|ZP_06849129.1| cold shock protein CspA [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|3097243|emb|CAA18820.1| small cold-shock protein [Mycobacterium leprae]
 gi|13092550|emb|CAC29706.1| putative cold shock protein [Mycobacterium leprae]
 gi|118571504|gb|ABL06255.1| cold shock protein A CspA_1 [Mycobacterium ulcerans Agy99]
 gi|183178434|gb|ACC43544.1| cold shock protein A CspA_1 [Mycobacterium marinum M]
 gi|219932588|emb|CAR70291.1| putative cold shock protein [Mycobacterium leprae Br4923]
 gi|295897969|gb|EFG77550.1| cold shock protein CspA [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 67

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI PE   +   DVF+H + +  +G   L E Q V ++
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFE 51


>gi|240173035|ref|ZP_04751693.1| putative cold shock protein A [Mycobacterium kansasii ATCC 12478]
 gi|254821833|ref|ZP_05226834.1| putative cold shock protein A [Mycobacterium intracellulare ATCC
          13950]
          Length = 67

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI PE   +   DVF+H + +  +G   L E Q V ++
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFE 51


>gi|71737155|ref|YP_275269.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. phaseolicola 1448A]
 gi|71557708|gb|AAZ36919.1| cold shock domain protein CspD [Pseudomonas syringae pv.
          phaseolicola 1448A]
          Length = 94

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  +  DD+F H S +   G   L  GQ V+++ +Q
Sbjct: 6  GKVKWFNNAKGYGFIIKDGKPD--DDLFAHFSTIQMEGYKTLKAGQPVSFEIIQ 57


>gi|2493772|sp|P72191|TAPA_PSEFR RecName: Full=Temperature acclimation protein A; AltName:
          Full=E7.0
 gi|1513084|gb|AAC45999.1| temperature acclimation protein A [Pseudomonas fragi]
          Length = 59

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 1  FNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQ 45


>gi|261210697|ref|ZP_05924989.1| cold shock protein CspD [Vibrio sp. RC341]
 gi|260840182|gb|EEX66762.1| cold shock protein CspD [Vibrio sp. RC341]
          Length = 73

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG  E G D+F H S +   G   L  GQ V+Y   Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMDGYRTLKAGQQVSYQVEQ 54


>gi|154248094|ref|YP_001419052.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
          autotrophicus Py2]
 gi|154162179|gb|ABS69395.1| putative cold-shock DNA-binding domain protein [Xanthobacter
          autotrophicus Py2]
          Length = 192

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GSIKW++  KGYGFI P+   + G DV +H + +   G     EG  V  + VQ  A G+
Sbjct: 31 GSIKWFDASKGYGFIVPD---DGGPDVLVHVTCLRRDGFQTAMEGARVVCEAVQR-AKGR 86

Query: 65 YSAENLKL 72
           +   L L
Sbjct: 87 QAFRVLSL 94



 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N  +G+GF+T    T    D+F+H   +   GL  L  GQ V   Y   D  G  
Sbjct: 123 TVKWFNRLRGFGFLTQGDGTP---DIFVHMETLRRHGLTELRPGQTVMVRYGDGD-KGLM 178

Query: 66  SAE 68
           +AE
Sbjct: 179 AAE 181


>gi|260185766|ref|ZP_05763240.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A]
 gi|289446436|ref|ZP_06436180.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A]
 gi|289419394|gb|EFD16595.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A]
          Length = 135

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+PDKG+GF++ EG    G+DV++  SA+ + G+  L  GQ V +      A+G+
Sbjct: 4  GKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPT-GVEALKAGQRVEFGI----ASGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|254455833|ref|ZP_05069262.1| 'Cold-shock' DNA-binding domain, putative [Candidatus
          Pelagibacter sp. HTCC7211]
 gi|207082835|gb|EDZ60261.1| 'Cold-shock' DNA-binding domain, putative [Candidatus
          Pelagibacter sp. HTCC7211]
          Length = 70

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKWYN  KGYGFI  +   +   D F+H SAV +AG+  L EG  +  ++   D    
Sbjct: 6  GKIKWYNGKKGYGFIERDDKEK---DAFVHASAVKAAGMRYLNEGDKL--EFTLEDGPKG 60

Query: 65 YSAENLKLV 73
           SA NLK V
Sbjct: 61 PSAVNLKKV 69


>gi|71278403|ref|YP_271177.1| cold shock DNA-binding domain-containing protein [Colwellia
          psychrerythraea 34H]
 gi|71144143|gb|AAZ24616.1| cold-shock DNA-binding domain family protein [Colwellia
          psychrerythraea 34H]
          Length = 68

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      E+G DVF H +A+   G   L EGQ V  ++   D    
Sbjct: 6  GTVKWFNEAKGFGFI----EQENGPDVFAHFNAIVGDGFKTLAEGQKV--EFTVTDGQKG 59

Query: 65 YSAENL 70
            AEN+
Sbjct: 60 PQAENI 65


>gi|307944227|ref|ZP_07659568.1| putative cold-shock DNA-binding domain protein [Roseibium sp.
           TrichSKD4]
 gi|307772573|gb|EFO31793.1| putative cold-shock DNA-binding domain protein [Roseibium sp.
           TrichSKD4]
          Length = 289

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
             G +K++  DKG+GFITP+   E   DVF+H SAV  +G+  L  GQ V+++  + D  
Sbjct: 211 QNGIVKFFKSDKGFGFITPD---EGDADVFVHISAVERSGMTTLDSGQRVSFE-TEPDRR 266

Query: 63  GK 64
           GK
Sbjct: 267 GK 268


>gi|294508964|ref|YP_003565853.1| Cold-shock DNA-binding domain protein [Bacillus megaterium QM
          B1551]
 gi|294352268|gb|ADE72590.1| Cold-shock DNA-binding domain protein [Bacillus megaterium QM
          B1551]
          Length = 76

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 10/59 (16%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLF--NLTEGQLVTYDYV 57
          G++KW+N +KG+GFITP    E+G D+F+H +A+     + G+   +L EGQ VT+  V
Sbjct: 7  GTVKWFNHEKGFGFITP----ENGPDLFVHFTAIERTKGTEGVVIKSLKEGQKVTFVVV 61


>gi|258621691|ref|ZP_05716722.1| cold shock-like protein CspD [Vibrio mimicus VM573]
 gi|258626362|ref|ZP_05721209.1| cold shock-like protein CspD [Vibrio mimicus VM603]
 gi|262171824|ref|ZP_06039502.1| cold shock protein CspD [Vibrio mimicus MB-451]
 gi|262402499|ref|ZP_06079060.1| cold shock protein CspD [Vibrio sp. RC586]
 gi|258581414|gb|EEW06316.1| cold shock-like protein CspD [Vibrio mimicus VM603]
 gi|258585922|gb|EEW10640.1| cold shock-like protein CspD [Vibrio mimicus VM573]
 gi|261892900|gb|EEY38886.1| cold shock protein CspD [Vibrio mimicus MB-451]
 gi|262351281|gb|EEZ00414.1| cold shock protein CspD [Vibrio sp. RC586]
          Length = 73

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PEG  E G D+F H S +   G   L  GQ V+Y   Q
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMDGYRTLKAGQQVSYQVEQ 54


>gi|295115086|emb|CBL35933.1| cold-shock DNA-binding protein family [butyrate-producing
          bacterium SM4/1]
          Length = 76

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  +G+GF+  E   E     F+H S +   G   L EGQ VT++ +  D
Sbjct: 1  MRVKGTVKWFNARRGFGFVCDEDGLEH----FVHYSQIQMEGFKRLGEGQSVTFE-IGED 55

Query: 61 ANGKYSAENLKLVPKSS 77
            G+  A  L+++P+  
Sbjct: 56 EKGRSVA--LEVIPEEQ 70


>gi|111017609|ref|YP_700581.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|111025401|ref|YP_707821.1| CspA family cold-shock protein [Rhodococcus jostii RHA1]
 gi|110817139|gb|ABG92423.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|110824380|gb|ABG99663.1| cold-shock protein, CspA family protein [Rhodococcus jostii RHA1]
          Length = 67

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N +KG+GFI P+  T    DVF+H S ++ +G  +L E Q V ++  Q
Sbjct: 3  QGIVKWFNGEKGFGFIAPDDGTP---DVFVHYSEISGSGFKSLDENQRVEFEVGQ 54


>gi|300779976|ref|ZP_07089832.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030]
 gi|300534086|gb|EFK55145.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030]
          Length = 67

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N +KG+GFI P+   +   DVF+H S +  +G   L E Q V ++
Sbjct: 4  GTVKWFNAEKGFGFIAPD---DGSSDVFVHYSEIQGSGFRTLEENQQVEFE 51


>gi|117924550|ref|YP_865167.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
          MC-1]
 gi|117608306|gb|ABK43761.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
          Length = 71

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N DKG+GFI P+  ++   DVF H S ++S +G  +L EGQ V +     D   
Sbjct: 7  GTVKWFNNDKGFGFIAPDNGSK---DVFAHFSEISSGSGFKSLEEGQKVEFSVEPGDKGP 63

Query: 64 K 64
          K
Sbjct: 64 K 64


>gi|24374170|ref|NP_718213.1| stress response protein CspD [Shewanella oneidensis MR-1]
 gi|113969986|ref|YP_733779.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-4]
 gi|114047221|ref|YP_737771.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-7]
 gi|117920198|ref|YP_869390.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          ANA-3]
 gi|146293325|ref|YP_001183749.1| cold-shock DNA-binding domain-containing protein [Shewanella
          putrefaciens CN-32]
 gi|24348677|gb|AAN55657.1|AE015704_8 stress response protein CspD [Shewanella oneidensis MR-1]
 gi|113884670|gb|ABI38722.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4]
 gi|113888663|gb|ABI42714.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7]
 gi|117612530|gb|ABK47984.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3]
 gi|145565015|gb|ABP75950.1| cold-shock DNA-binding protein family [Shewanella putrefaciens
          CN-32]
 gi|319426625|gb|ADV54699.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens
          200]
          Length = 68

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI P+   + G+DVF H S +   G   L  GQ V ++  Q
Sbjct: 4  GTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEQ 54


>gi|294636954|ref|ZP_06715278.1| cold shock domain protein CspD [Edwardsiella tarda ATCC 23685]
 gi|291089847|gb|EFE22408.1| cold shock domain protein CspD [Edwardsiella tarda ATCC 23685]
          Length = 73

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI P G    GDD+F H +++   G   L  GQ V ++
Sbjct: 4  GTVKWFNNAKGFGFICPAG---GGDDIFAHYTSIQMEGYRTLKAGQRVQFE 51


>gi|254000444|ref|YP_003052507.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. SIP3-4]
 gi|313202403|ref|YP_004041061.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. MP688]
 gi|253987123|gb|ACT51980.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4]
 gi|312441719|gb|ADQ85825.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688]
          Length = 67

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N  KG+GFITP+   + G D+F H SA+A  G  +L +   V+++ +
Sbjct: 4  GIVKWFNDSKGFGFITPD---DGGSDLFAHYSAIADTGYKSLKDNDRVSFEVI 53


>gi|88860388|ref|ZP_01135026.1| cold-shock DNA-binding domain family protein [Pseudoalteromonas
          tunicata D2]
 gi|88817586|gb|EAR27403.1| cold-shock DNA-binding domain family protein [Pseudoalteromonas
          tunicata D2]
          Length = 69

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N  KG+GFI    + E+G DVF H   +   G   LTEGQ V +   Q  
Sbjct: 7  GTVKWFNEAKGFGFI----AQENGPDVFAHFGNIVGEGFKTLTEGQKVEFIVTQGQ 58


>gi|302523728|ref|ZP_07276070.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
 gi|302432623|gb|EFL04439.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
          Length = 67

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KW+N +KG+GFITP+     G DVF+H S +   G   L E   V ++  Q
Sbjct: 3  EGTVKWFNSEKGFGFITPD---NGGGDVFVHYSEIQGNGFRTLEENARVQFEIGQ 54


>gi|238782953|ref|ZP_04626981.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
 gi|332163162|ref|YP_004299739.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|6073870|gb|AAB40923.2| major cold shock protein CSPA1 [Yersinia enterocolitica]
 gi|238716156|gb|EEQ08140.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
 gi|318603954|emb|CBY25452.1| cold shock protein CspG [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|325667392|gb|ADZ44036.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330862837|emb|CBX72978.1| cold shock-like protein cspB [Yersinia enterocolitica W22703]
          Length = 70

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +  ++N A G
Sbjct: 7  GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IENGAKG 61


>gi|160914514|ref|ZP_02076729.1| hypothetical protein EUBDOL_00520 [Eubacterium dolichum DSM 3991]
 gi|158433672|gb|EDP11961.1| hypothetical protein EUBDOL_00520 [Eubacterium dolichum DSM 3991]
          Length = 65

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW+N +KG+GFI     TE   D+F+H S +   G  +L EG+ V ++  +++
Sbjct: 3  GNVKWFNAEKGFGFI----RTEEEKDIFVHYSQIVQDGYKSLNEGEAVRFEIFESE 54


>gi|146282648|ref|YP_001172801.1| cold-shock protein CspD [Pseudomonas stutzeri A1501]
 gi|145570853|gb|ABP79959.1| cold-shock protein CspD [Pseudomonas stutzeri A1501]
          Length = 93

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  E   D+F H SA+   G   L  GQ V ++ +Q
Sbjct: 10 GKVKWFNNAKGYGFIVADGGDE---DLFAHYSAIQMEGYRTLKAGQAVMFNILQ 60


>gi|157375023|ref|YP_001473623.1| cold-shock DNA-binding domain-containing protein [Shewanella
          sediminis HAW-EB3]
 gi|170727046|ref|YP_001761072.1| cold-shock DNA-binding domain-containing protein [Shewanella
          woodyi ATCC 51908]
 gi|157317397|gb|ABV36495.1| cold-shock DNA-binding domain protein [Shewanella sediminis
          HAW-EB3]
 gi|169812393|gb|ACA86977.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
          51908]
          Length = 68

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI PE     G+DVF H S +   G   L  GQ V ++
Sbjct: 4  GTVKWFNNAKGFGFICPEA---GGEDVFAHYSTIEMEGYRTLKAGQPVQFE 51


>gi|257485426|ref|ZP_05639467.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. tabaci ATCC 11528]
 gi|289625414|ref|ZP_06458368.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. aesculi str. NCPPB3681]
 gi|289649303|ref|ZP_06480646.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. aesculi str. 2250]
 gi|298487538|ref|ZP_07005580.1| Cold shock-like protein cspD [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|298157922|gb|EFH99000.1| Cold shock-like protein cspD [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|330866849|gb|EGH01558.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. aesculi str. 0893_23]
 gi|330889670|gb|EGH22331.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. mori str. 301020]
          Length = 94

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  +  DD+F H S +   G   L  GQ V+++ +Q
Sbjct: 6  GKVKWFNNAKGYGFIIEDGKPD--DDLFAHFSTIQMEGYKTLKAGQPVSFEIIQ 57


>gi|111021610|ref|YP_704582.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|226364145|ref|YP_002781927.1| cold shock protein [Rhodococcus opacus B4]
 gi|110821140|gb|ABG96424.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|226242634|dbj|BAH52982.1| cold shock protein [Rhodococcus opacus B4]
          Length = 67

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI P+  +    DVF+H S ++ +G  +L E Q V ++  Q     
Sbjct: 3  QGVVKWFNSEKGFGFIAPDDGSA---DVFVHYSEISGSGYKSLEENQRVEFEVGQGQKGP 59

Query: 64 KYSAENLKLV 73
          +  A+N++ V
Sbjct: 60 Q--AQNVRAV 67


>gi|84393766|ref|ZP_00992514.1| cold shock-like protein CspD [Vibrio splendidus 12B01]
 gi|84375628|gb|EAP92527.1| cold shock-like protein CspD [Vibrio splendidus 12B01]
          Length = 73

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PEG  E G D+F H S +   G   L  GQ V Y+ V++   G 
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMEGYRTLKAGQQVDYE-VESGPKGS 59

Query: 65 YSA 67
          +++
Sbjct: 60 HAS 62


>gi|322434375|ref|YP_004216587.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321162102|gb|ADW67807.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 75

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++G +KW+N  KG+GF+      E G DVF+H S++   G  +L EG  V +D +Q +
Sbjct: 4  YKGEVKWFNNAKGFGFL----GREEGPDVFVHYSSIQLDGYKSLKEGDKVEFDVIQGE 57


>gi|291303304|ref|YP_003514582.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia
          nassauensis DSM 44728]
 gi|290572524|gb|ADD45489.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis
          DSM 44728]
          Length = 144

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KWYN +KG+GF++     + G+DVFLHR A+   G+  L  GQ + Y  V
Sbjct: 15 GRVKWYNAEKGFGFVS---RDDGGNDVFLHRDALPE-GVTELKAGQKLEYGIV 63


>gi|91784878|ref|YP_560084.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|296160038|ref|ZP_06842858.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|91688832|gb|ABE32032.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
 gi|295889784|gb|EFG69582.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
          Length = 67

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT   S   G+D+F H S + + G  +L E Q V++D V+   
Sbjct: 1  METGIVKWFNDAKGFGFIT---SDSGGEDLFAHFSEIRADGFKSLKENQRVSFD-VKAGP 56

Query: 62 NGKYSA 67
           GK +A
Sbjct: 57 KGKQAA 62


>gi|330883205|gb|EGH17354.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 59

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 1  FNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 45


>gi|52425199|ref|YP_088336.1| CspC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307251|gb|AAU37751.1| CspC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 70

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFITP    +   D+F+H S++      +L EG  V Y+ V+N   G 
Sbjct: 6  GLVKWFNSDKGFGFITP---ADGSKDLFVHFSSILGNNYRSLNEGDRVEYN-VENTQRGP 61

Query: 65 YSAE 68
           + E
Sbjct: 62 AAVE 65


>gi|294053655|ref|YP_003547313.1| cold-shock DNA-binding domain protein [Coraliomargarita
          akajimensis DSM 45221]
 gi|293612988|gb|ADE53143.1| cold-shock DNA-binding domain protein [Coraliomargarita
          akajimensis DSM 45221]
          Length = 67

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW++ +KGYGFI P+  ++   D+F+H S + S G   L +GQ V ++
Sbjct: 4  GTVKWFDAEKGYGFIQPDDGSK---DLFVHHSEIQSDGYAKLEDGQKVEFE 51


>gi|218709066|ref|YP_002416687.1| Cold shock-like protein cspD [Vibrio splendidus LGP32]
 gi|218322085|emb|CAV18171.1| Cold shock-like protein cspD [Vibrio splendidus LGP32]
          Length = 76

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PEG  E G D+F H S +   G   L  GQ V Y+ V++   G 
Sbjct: 7  GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMEGYRTLKAGQQVDYE-VESGPKGS 62

Query: 65 YSA 67
          +++
Sbjct: 63 HAS 65


>gi|86146448|ref|ZP_01064771.1| cold shock-like protein CspD [Vibrio sp. MED222]
 gi|85835711|gb|EAQ53846.1| cold shock-like protein CspD [Vibrio sp. MED222]
          Length = 73

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PEG  E G D+F H S +   G   L  GQ V Y+ V++   G 
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMEGYRTLKAGQQVDYE-VESGPKGS 59

Query: 65 YSA 67
          +++
Sbjct: 60 HAS 62


>gi|153953338|ref|YP_001394103.1| CspA [Clostridium kluyveri DSM 555]
 gi|219853967|ref|YP_002471089.1| hypothetical protein CKR_0624 [Clostridium kluyveri NBRC 12016]
 gi|146346219|gb|EDK32755.1| CspA [Clostridium kluyveri DSM 555]
 gi|219567691|dbj|BAH05675.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 67

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N +KG+GFI   G     +DVF+H +A+ S     NL EGQ V +D V+    G
Sbjct: 4  GTVKWFNSEKGFGFIEVPGE----NDVFVHFTAIQSNEARKNLEEGQKVQFD-VEEGPKG 58

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 59 LQAANVVKL 67


>gi|146283032|ref|YP_001173185.1| cold shock protein CspA [Pseudomonas stutzeri A1501]
 gi|145571237|gb|ABP80343.1| cold shock protein CspA [Pseudomonas stutzeri A1501]
          Length = 136

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KW+N  KGYGFI       +G DVF+H  A+   G  +L EGQ V +  +Q
Sbjct: 74  GTVKWFNDAKGYGFI----QRGNGADVFVHYRAIRGDGHRSLAEGQQVEFSVIQ 123


>gi|329894352|ref|ZP_08270222.1| putative cold-shock DNA-binding domain protein [gamma
          proteobacterium IMCC3088]
 gi|328923148|gb|EGG30471.1| putative cold-shock DNA-binding domain protein [gamma
          proteobacterium IMCC3088]
          Length = 70

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  KGYGFI  E  +   DDVF+H  ++   G   L EGQ V +
Sbjct: 7  GKVKWFNNAKGYGFIERENES---DDVFVHFRSIQGEGFRTLNEGQAVEF 53


>gi|312137854|ref|YP_004005190.1| cold shock protein [Rhodococcus equi 103S]
 gi|325676045|ref|ZP_08155727.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
 gi|311887193|emb|CBH46502.1| cold shock protein [Rhodococcus equi 103S]
 gi|325553085|gb|EGD22765.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
          Length = 67

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KW+N +KG+GFI P   ++   D+F+H S + S G  +L E Q V ++  Q
Sbjct: 3  EGTVKWFNSEKGFGFIAP---SDGSADLFVHYSEIQSGGFRSLEENQHVRFEIGQ 54


>gi|269102226|ref|ZP_06154923.1| cold shock protein CspD [Photobacterium damselae subsp. damselae
          CIP 102761]
 gi|268162124|gb|EEZ40620.1| cold shock protein CspD [Photobacterium damselae subsp. damselae
          CIP 102761]
          Length = 73

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 9/75 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N  KG+GFI P    E GD D+F H S +   G   L  GQ V Y+ VQ    G
Sbjct: 4  GTVKWFNNAKGFGFICP----EDGDGDIFAHYSTIQMDGYRTLKAGQQVNYE-VQTGPKG 58

Query: 64 KYSAENLKLVPKSSN 78
           ++ E   + P  SN
Sbjct: 59 FHARE---ITPIESN 70


>gi|158296117|ref|XP_316618.3| AGAP006591-PA [Anopheles gambiae str. PEST]
 gi|157016359|gb|EAA11383.3| AGAP006591-PA [Anopheles gambiae str. PEST]
          Length = 182

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          RG  KW+N  KG+GFITP+   + G +VF+H+S +   G  +L E + V ++
Sbjct: 43 RGRCKWFNVVKGWGFITPD---DGGQEVFVHQSVIQMGGFRSLGENEEVEFE 91


>gi|153811452|ref|ZP_01964120.1| hypothetical protein RUMOBE_01844 [Ruminococcus obeum ATCC 29174]
 gi|149832579|gb|EDM87663.1| hypothetical protein RUMOBE_01844 [Ruminococcus obeum ATCC 29174]
 gi|291546074|emb|CBL19182.1| cold-shock DNA-binding protein family [Ruminococcus sp. SR1/5]
          Length = 75

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KGYGFIT     E G D F H S +   G   L+ GQ V ++    DANG
Sbjct: 6  QGTVKWFSAQKGYGFIT----GEDGIDYFAHFSEIQMDGYRKLSGGQPVLFE-AGTDANG 60

Query: 64 KYSAENL 70
          +  A+N+
Sbjct: 61 RSLAKNI 67


>gi|22124143|ref|NP_667566.1| cold shock-like protein [Yersinia pestis KIM 10]
 gi|108809648|ref|YP_653564.1| major cold shock protein Cspa1 [Yersinia pestis Antiqua]
 gi|108813686|ref|YP_649453.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516]
 gi|21956898|gb|AAM83817.1|AE013622_6 cold shock-like protein [Yersinia pestis KIM 10]
 gi|108777334|gb|ABG19853.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108781561|gb|ABG15619.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
          Length = 102

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 39  GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 94

Query: 65  YSAENLKL 72
            +   + L
Sbjct: 95  SAVNVIAL 102


>gi|88859394|ref|ZP_01134034.1| Cold shock protein [Pseudoalteromonas tunicata D2]
 gi|88818411|gb|EAR28226.1| Cold shock protein [Pseudoalteromonas tunicata D2]
          Length = 69

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI       SG DVF H SA++  G   L EGQ V   +V       
Sbjct: 7  GTVKWFNEAKGFGFI----EQASGPDVFAHFSAISGDGFKTLAEGQKV--QFVVTKGQKG 60

Query: 65 YSAENLKLV 73
            AEN+ ++
Sbjct: 61 PQAENIVVL 69


>gi|144900094|emb|CAM76958.1| cold shock DNA-binding domain protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 209

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           ++KW+N  KG+GF+ P   T    D FLH SA+  AGL  + EG  +  D  Q +
Sbjct: 55  TVKWFNASKGFGFVAPSDGTP---DAFLHISALERAGLTQVAEGTTLVVDLGQGN 106



 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G +K+++ +KG+GF+  +   + G DVF+H  A+  +G+  L  GQ V     Q
Sbjct: 146 GVVKFFSAEKGFGFVQTD---QGGKDVFVHIKALERSGIKALETGQRVRCTTTQ 196


>gi|320323777|gb|EFW79861.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. glycinea str. B076]
 gi|320327917|gb|EFW83922.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. glycinea str. race 4]
 gi|330881200|gb|EGH15349.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. glycinea str. race 4]
 gi|330987930|gb|EGH86033.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. lachrymans str. M301315]
 gi|331010738|gb|EGH90794.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. tabaci ATCC 11528]
          Length = 92

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  +  DD+F H S +   G   L  GQ V+++ +Q
Sbjct: 4  GKVKWFNNAKGYGFIIEDGKPD--DDLFAHFSTIQMEGYKTLKAGQPVSFEIIQ 55


>gi|251789968|ref|YP_003004689.1| cold-shock DNA-binding domain-containing protein [Dickeya zeae
          Ech1591]
 gi|271500838|ref|YP_003333863.1| cold-shock DNA-binding domain-containing protein [Dickeya
          dadantii Ech586]
 gi|307130778|ref|YP_003882794.1| cold shock protein [Dickeya dadantii 3937]
 gi|247538589|gb|ACT07210.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591]
 gi|270344393|gb|ACZ77158.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586]
 gi|306528307|gb|ADM98237.1| cold shock protein [Dickeya dadantii 3937]
          Length = 73

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI PE     G+D+F H S +   G   L  GQ+V +   Q
Sbjct: 4  GTVKWFNNAKGFGFICPE---SGGEDIFAHYSTIQMDGYRTLKAGQVVQFTVHQ 54


>gi|186475442|ref|YP_001856912.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184191901|gb|ACC69866.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 67

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFIT   S   G+D+F H S + + G  +L E Q V++D V+   
Sbjct: 1  METGIVKWFNDAKGYGFIT---SDTGGEDLFAHFSEIRADGFKSLKENQRVSFD-VKAGP 56

Query: 62 NGKYSA 67
           G+ +A
Sbjct: 57 KGRQAA 62


>gi|85059078|ref|YP_454780.1| cold shock-like protein [Sodalis glossinidius str. 'morsitans']
 gi|84779598|dbj|BAE74375.1| cold shock-like protein [Sodalis glossinidius str. 'morsitans']
          Length = 73

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI PE     G+D+F H S +   G   L  GQ+V ++  Q
Sbjct: 4  GKVKWFNNAKGFGFICPE---NGGEDIFAHYSMIHMDGYRTLKAGQVVRFEVHQ 54


>gi|22124144|ref|NP_667567.1| cold shock-like protein [Yersinia pestis KIM 10]
 gi|45443633|ref|NP_995172.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
          91001]
 gi|21956899|gb|AAM83818.1|AE013622_7 cold shock-like protein [Yersinia pestis KIM 10]
 gi|45438503|gb|AAS64049.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
          91001]
          Length = 95

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 32 GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 87

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 88 AAVNVIAL 95


>gi|119476410|ref|ZP_01616761.1| Cold-shock DNA-binding protein [marine gamma proteobacterium
           HTCC2143]
 gi|119450274|gb|EAW31509.1| Cold-shock DNA-binding protein [marine gamma proteobacterium
           HTCC2143]
          Length = 144

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KGYGF+T      SG+++F+H  +++  G   L EGQ + +  V  D   +
Sbjct: 79  GTVKWFNVSKGYGFVT----RASGEEIFVHFRSISGNGRKVLREGQKIEFSVVDGDKGPQ 134

Query: 65  YSAENLKLV 73
             AE++ +V
Sbjct: 135 --AEDVDIV 141


>gi|19551424|ref|NP_599426.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
 gi|62389068|ref|YP_224470.1| cold-shock protein CspA [Corynebacterium glutamicum ATCC 13032]
 gi|21322938|dbj|BAB97567.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032]
 gi|41324401|emb|CAF18741.1| COLD-SHOCK PROTEIN CSPA [Corynebacterium glutamicum ATCC 13032]
          Length = 67

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI P    +   D+F+H S +  +G  NL E Q V ++
Sbjct: 3  QGTVKWFNGEKGFGFIAP---NDGSADLFVHYSEIQGSGFRNLEENQPVEFE 51


>gi|327480906|gb|AEA84216.1| cold-shock protein CspD [Pseudomonas stutzeri DSM 4166]
          Length = 87

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  E   D+F H SA+   G   L  GQ V ++ +Q
Sbjct: 4  GKVKWFNNAKGYGFIVADGGDE---DLFAHYSAIQMEGYRTLKAGQAVMFNILQ 54


>gi|305680386|ref|ZP_07403194.1| cold shock protein CspA [Corynebacterium matruchotii ATCC 14266]
 gi|305659917|gb|EFM49416.1| cold shock protein CspA [Corynebacterium matruchotii ATCC 14266]
          Length = 68

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI PE  +    DVF+H S +   G   L E Q+V ++
Sbjct: 3  KGTVKWFNAEKGFGFIEPEDGSA---DVFVHYSEINGDGFRYLEEDQVVEFE 51


>gi|206896315|ref|YP_002247470.1| hypothetical protein COPRO5265_1162 [Coprothermobacter
          proteolyticus DSM 5265]
 gi|206738932|gb|ACI18010.1| conserved domain protein [Coprothermobacter proteolyticus DSM
          5265]
          Length = 84

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW++  KGYGFIT +   +   DVF+H SA+   G   L EG+ V ++ V   A
Sbjct: 18 MYAGTVKWFDAQKGYGFITRD---DGEGDVFVHFSAIEGDGFKTLNEGEKVEFE-VSRGA 73

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 74 KGPQAAHVVK 83


>gi|238794630|ref|ZP_04638236.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
 gi|238797908|ref|ZP_04641399.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
 gi|238718213|gb|EEQ10038.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
 gi|238726019|gb|EEQ17567.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
          Length = 66

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 3  GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IENGAKGP 58

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 59 SAVNVVAL 66


>gi|293604627|ref|ZP_06687029.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
          43553]
 gi|292816958|gb|EFF76037.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
          43553]
          Length = 69

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KW+N DKGYGFI+PE     G D+F H S +   G  +L E Q V++
Sbjct: 3  IETGIVKWFNNDKGYGFISPE---LGGKDLFAHYSEIQGDGHKSLEENQRVSF 52


>gi|15610784|ref|NP_218165.1| cold shock protein A [Mycobacterium tuberculosis H37Rv]
 gi|15843260|ref|NP_338297.1| cold-shock domain-contain protein [Mycobacterium tuberculosis
          CDC1551]
 gi|31794818|ref|NP_857311.1| cold shock protein A [Mycobacterium bovis AF2122/97]
 gi|41406521|ref|NP_959357.1| CspA_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118464580|ref|YP_879797.1| hypothetical protein MAV_0516 [Mycobacterium avium 104]
 gi|121639561|ref|YP_979785.1| putative cold shock protein A cspA [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|148663511|ref|YP_001285034.1| putative cold shock protein A [Mycobacterium tuberculosis H37Ra]
 gi|148824850|ref|YP_001289604.1| cold shock protein A cspA [Mycobacterium tuberculosis F11]
 gi|167968570|ref|ZP_02550847.1| cold shock protein A cspA [Mycobacterium tuberculosis H37Ra]
 gi|215405695|ref|ZP_03417876.1| cold shock protein A cspA [Mycobacterium tuberculosis 02_1987]
 gi|215413568|ref|ZP_03422240.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A]
 gi|215424892|ref|ZP_03422811.1| cold shock protein A cspA [Mycobacterium tuberculosis T92]
 gi|215447984|ref|ZP_03434736.1| cold shock protein A cspA [Mycobacterium tuberculosis T85]
 gi|218755426|ref|ZP_03534222.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503]
 gi|219559719|ref|ZP_03538795.1| cold shock protein A cspA [Mycobacterium tuberculosis T17]
 gi|224992058|ref|YP_002646747.1| putative cold shock protein A [Mycobacterium bovis BCG str. Tokyo
          172]
 gi|253800688|ref|YP_003033689.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 1435]
 gi|254233144|ref|ZP_04926470.1| cold shock protein A cspA [Mycobacterium tuberculosis C]
 gi|254366198|ref|ZP_04982242.1| cold shock protein A cspA [Mycobacterium tuberculosis str.
          Haarlem]
 gi|254552760|ref|ZP_05143207.1| cold shock protein A cspA [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|254773485|ref|ZP_05215001.1| putative cold shock protein A [Mycobacterium avium subsp. avium
          ATCC 25291]
 gi|260184565|ref|ZP_05762039.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A]
 gi|260198688|ref|ZP_05766179.1| cold shock protein A cspA [Mycobacterium tuberculosis T46]
 gi|260202831|ref|ZP_05770322.1| cold shock protein A cspA [Mycobacterium tuberculosis K85]
 gi|289441078|ref|ZP_06430822.1| cold shock protein A cspA [Mycobacterium tuberculosis T46]
 gi|289445242|ref|ZP_06434986.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A]
 gi|289555909|ref|ZP_06445119.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 605]
 gi|289571885|ref|ZP_06452112.1| cold shock protein A cspA [Mycobacterium tuberculosis T17]
 gi|289572295|ref|ZP_06452522.1| cold shock protein A cspA [Mycobacterium tuberculosis K85]
 gi|289747484|ref|ZP_06506862.1| cold shock protein A [Mycobacterium tuberculosis 02_1987]
 gi|289748162|ref|ZP_06507540.1| cold shock protein A cspA [Mycobacterium tuberculosis T92]
 gi|289759803|ref|ZP_06519181.1| cold shock protein A [Mycobacterium tuberculosis T85]
 gi|289763825|ref|ZP_06523203.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503]
 gi|294995441|ref|ZP_06801132.1| cold shock protein A cspA [Mycobacterium tuberculosis 210]
 gi|297636323|ref|ZP_06954103.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 4207]
 gi|297733316|ref|ZP_06962434.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN R506]
 gi|298527122|ref|ZP_07014531.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A]
 gi|306778001|ref|ZP_07416338.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu001]
 gi|306778534|ref|ZP_07416871.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu002]
 gi|306786555|ref|ZP_07424877.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu003]
 gi|306790921|ref|ZP_07429243.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu004]
 gi|306791241|ref|ZP_07429543.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu005]
 gi|306796028|ref|ZP_07434330.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu006]
 gi|306801275|ref|ZP_07437943.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu008]
 gi|306805489|ref|ZP_07442157.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu007]
 gi|306969780|ref|ZP_07482441.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu009]
 gi|306974119|ref|ZP_07486780.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu010]
 gi|307081827|ref|ZP_07490997.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu011]
 gi|307086441|ref|ZP_07495554.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu012]
 gi|313660648|ref|ZP_07817528.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN V2475]
 gi|54036917|sp|P63849|CSPA_MYCBO RecName: Full=Probable cold shock protein A
 gi|54040914|sp|P63848|CSPA_MYCTU RecName: Full=Probable cold shock protein A
 gi|2105046|emb|CAB08840.1| PROBABLE COLD SHOCK PROTEIN A CSPA [Mycobacterium tuberculosis
          H37Rv]
 gi|13883617|gb|AAK48111.1| cold-shock domain family protein [Mycobacterium tuberculosis
          CDC1551]
 gi|31620415|emb|CAD95858.1| PROBABLE COLD SHOCK PROTEIN A CSPA [Mycobacterium bovis
          AF2122/97]
 gi|41394870|gb|AAS02740.1| CspA_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165867|gb|ABK66764.1| conserved domain protein [Mycobacterium avium 104]
 gi|121495209|emb|CAL73695.1| Probable cold shock protein A cspA [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|124602937|gb|EAY61212.1| cold shock protein A cspA [Mycobacterium tuberculosis C]
 gi|134151710|gb|EBA43755.1| cold shock protein A cspA [Mycobacterium tuberculosis str.
          Haarlem]
 gi|148507663|gb|ABQ75472.1| putative cold shock protein A [Mycobacterium tuberculosis H37Ra]
 gi|148723377|gb|ABR08002.1| cold shock protein A cspA [Mycobacterium tuberculosis F11]
 gi|224775173|dbj|BAH27979.1| putative cold shock protein A [Mycobacterium bovis BCG str. Tokyo
          172]
 gi|253322191|gb|ACT26794.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 1435]
 gi|289413997|gb|EFD11237.1| cold shock protein A cspA [Mycobacterium tuberculosis T46]
 gi|289418200|gb|EFD15401.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A]
 gi|289440541|gb|EFD23034.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 605]
 gi|289536726|gb|EFD41304.1| cold shock protein A cspA [Mycobacterium tuberculosis K85]
 gi|289545639|gb|EFD49287.1| cold shock protein A cspA [Mycobacterium tuberculosis T17]
 gi|289688012|gb|EFD55500.1| cold shock protein A [Mycobacterium tuberculosis 02_1987]
 gi|289688749|gb|EFD56178.1| cold shock protein A cspA [Mycobacterium tuberculosis T92]
 gi|289711331|gb|EFD75347.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503]
 gi|289715367|gb|EFD79379.1| cold shock protein A [Mycobacterium tuberculosis T85]
 gi|298496916|gb|EFI32210.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A]
 gi|308213712|gb|EFO73111.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu001]
 gi|308328442|gb|EFP17293.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu002]
 gi|308328877|gb|EFP17728.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu003]
 gi|308332717|gb|EFP21568.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu004]
 gi|308340210|gb|EFP29061.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu005]
 gi|308343496|gb|EFP32347.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu006]
 gi|308347996|gb|EFP36847.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu007]
 gi|308351938|gb|EFP40789.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu008]
 gi|308352698|gb|EFP41549.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu009]
 gi|308356572|gb|EFP45423.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu010]
 gi|308360530|gb|EFP49381.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu011]
 gi|308364142|gb|EFP52993.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu012]
 gi|323717697|gb|EGB26898.1| cold shock protein A cspA [Mycobacterium tuberculosis CDC1551A]
 gi|326905483|gb|EGE52416.1| cold shock protein A cspA [Mycobacterium tuberculosis W-148]
 gi|328460418|gb|AEB05841.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 4207]
          Length = 67

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI PE   +   DVF+H + +   G   L E Q V ++
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGTGFRTLEENQKVEFE 51


>gi|85717414|ref|ZP_01048364.1| cold shock protein [Nitrobacter sp. Nb-311A]
 gi|85695769|gb|EAQ33677.1| cold shock protein [Nitrobacter sp. Nb-311A]
          Length = 62

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +G  FI PE     G DVF+H SAV  AGL +L+EG  V+++ VQN   GK SAE 
Sbjct: 6  EGLRFIEPESG---GKDVFVHISAVERAGLSSLSEGDKVSHEVVQN--RGKESAET 56


>gi|241889467|ref|ZP_04776767.1| putative cold shock protein [Gemella haemolysans ATCC 10379]
 gi|329768516|ref|ZP_08260004.1| cold shock protein cspA [Gemella haemolysans M341]
 gi|241863863|gb|EER68245.1| putative cold shock protein [Gemella haemolysans ATCC 10379]
 gi|328836666|gb|EGF86323.1| cold shock protein cspA [Gemella haemolysans M341]
          Length = 66

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI   G      D+F+H S++   G   L EG  V ++ V++ A
Sbjct: 1  MKQGTVKWFNEEKGFGFIEVAGEK----DIFVHFSSIKKDGFKTLKEGDKVEFE-VEDGA 55

Query: 62 NGKYSA 67
           G  +A
Sbjct: 56 RGPQAA 61


>gi|145300857|ref|YP_001143698.1| major cold shock protein [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|330828121|ref|YP_004391073.1| Cold shock-like protein cspI [Aeromonas veronii B565]
 gi|142853629|gb|ABO91950.1| major cold shock protein [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|328803257|gb|AEB48456.1| Cold shock-like protein cspI [Aeromonas veronii B565]
          Length = 70

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++K++N +KG+GFI+P    +   DVF+H SA+ S     L EGQ V +   Q
Sbjct: 7  GTVKFFNAEKGFGFISP---ADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQ 57


>gi|88798111|ref|ZP_01113698.1| Cold shock protein [Reinekea sp. MED297]
 gi|88779308|gb|EAR10496.1| Cold shock protein [Reinekea sp. MED297]
          Length = 153

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +KW+N  KG+GF+T     ++G+DVF+H  ++   G  +L EGQ V +  V++     
Sbjct: 88  GLVKWFNVSKGFGFVT----RDNGEDVFVHFRSIRGRGHRSLQEGQRVRFGVVESSKG-- 141

Query: 65  YSAENLKLVPK 75
             AE++ +V +
Sbjct: 142 LQAEDVTIVRQ 152


>gi|322433221|ref|YP_004210442.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321165613|gb|ADW71315.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 83

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KGYGF+  EG    G DVF+H S++   G   L EG  V +D +Q +
Sbjct: 6  GEVKWFNNAKGYGFLGREG----GPDVFVHYSSIQLDGYKTLKEGDPVEFDIIQGN 57


>gi|262037747|ref|ZP_06011189.1| cold shock protein-related protein [Leptotrichia goodfellowii
          F0264]
 gi|261748219|gb|EEY35616.1| cold shock protein-related protein [Leptotrichia goodfellowii
          F0264]
          Length = 65

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFI    S E G+D FLH S +   G  ++ EG+ V++D
Sbjct: 3  GKVKWFNDKKGFGFI----SGEDGNDYFLHFSKINKEGFKSVNEGEEVSFD 49


>gi|167753531|ref|ZP_02425658.1| hypothetical protein ALIPUT_01806 [Alistipes putredinis DSM
          17216]
 gi|167658156|gb|EDS02286.1| hypothetical protein ALIPUT_01806 [Alistipes putredinis DSM
          17216]
          Length = 66

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KGYGFIT     E G +VF+H S + S     L EGQ V ++ + N A G+
Sbjct: 3  GQVKWFDSKKGYGFITR----EDGKEVFVHFSGIVSDSFKTLNEGQKVAFE-LGNGAKGE 57


>gi|1402755|gb|AAC80244.1| major cold-shock protein [Lactobacillus casei]
          Length = 45

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 4/48 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          DKGYGFIT E     G DVF+H SA+   G  +L EGQ V+YD  Q+D
Sbjct: 1  DKGYGFITGE----DGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSD 44


>gi|108809647|ref|YP_653563.1| major cold shock protein Cspa2 [Yersinia pestis Antiqua]
 gi|108813687|ref|YP_649454.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516]
 gi|145597566|ref|YP_001161642.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides F]
 gi|153948953|ref|YP_001399367.1| cold shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|153997419|ref|ZP_02022519.1| major cold shock protein Cspa2 [Yersinia pestis CA88-4125]
 gi|162421711|ref|YP_001605762.1| cold shock DNA-binding domain-containing protein [Yersinia pestis
          Angola]
 gi|165927588|ref|ZP_02223420.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165937409|ref|ZP_02225972.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166012234|ref|ZP_02233132.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166214132|ref|ZP_02240167.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167401979|ref|ZP_02307462.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167420637|ref|ZP_02312390.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167425433|ref|ZP_02317186.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|218930653|ref|YP_002348528.1| major cold shock protein Cspa2 [Yersinia pestis CO92]
 gi|229836786|ref|ZP_04456951.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides A]
 gi|229839314|ref|ZP_04459473.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
          str. PEXU2]
 gi|229899878|ref|ZP_04515019.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
          str. India 195]
 gi|229904189|ref|ZP_04519300.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516]
 gi|270488628|ref|ZP_06205702.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|2275140|emb|CAB10779.1| hypothetical protein [Yersinia pestis]
 gi|108777335|gb|ABG19854.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108781560|gb|ABG15618.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
 gi|115349264|emb|CAL22231.1| major cold shock protein Cspa2 [Yersinia pestis CO92]
 gi|145209262|gb|ABP38669.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|149289056|gb|EDM39136.1| major cold shock protein Cspa2 [Yersinia pestis CA88-4125]
 gi|152960448|gb|ABS47909.1| 'Cold-shock' DNA-binding domain [Yersinia pseudotuberculosis IP
          31758]
 gi|162354526|gb|ABX88474.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
 gi|165914514|gb|EDR33128.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165920482|gb|EDR37759.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165988853|gb|EDR41154.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166204619|gb|EDR49099.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166961443|gb|EDR57464.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167048565|gb|EDR59973.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167055447|gb|EDR65240.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|229678307|gb|EEO74412.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516]
 gi|229687370|gb|EEO79445.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
          str. India 195]
 gi|229695680|gb|EEO85727.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
          str. PEXU2]
 gi|229705729|gb|EEO91738.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides A]
 gi|270337132|gb|EFA47909.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|320017194|gb|ADW00766.1| major cold shock protein Cspa2 [Yersinia pestis biovar Medievalis
          str. Harbin 35]
          Length = 70

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 AAVNVIAL 70


>gi|238024869|ref|YP_002909101.1| Cold shock protein [Burkholderia glumae BGR1]
 gi|237879534|gb|ACR31866.1| Cold shock protein [Burkholderia glumae BGR1]
          Length = 67

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFI+P+      DD+F H S +   G  +L EGQ V+++
Sbjct: 4  GIVKWFNDSKGFGFISPDNGK---DDLFAHFSEIRGDGFRSLAEGQRVSFE 51


>gi|169627591|ref|YP_001701240.1| cold shock protein A (CspA) [Mycobacterium abscessus ATCC 19977]
 gi|169239558|emb|CAM60586.1| Probable cold shock protein A (CspA) [Mycobacterium abscessus]
          Length = 67

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N +KG+GFI PE   +   DVF+H + +   G   L E Q V ++  Q+
Sbjct: 3  QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGNGFRTLEENQKVEFEVGQS 55


>gi|330503289|ref|YP_004380158.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina NK-01]
 gi|328917575|gb|AEB58406.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina NK-01]
          Length = 95

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  E   D+F H SA+   G   L  GQ V ++ VQ
Sbjct: 10 GKVKWFNNAKGYGFILADGRDE---DLFAHYSAIQMDGYKTLKAGQPVRFEIVQ 60


>gi|183598325|ref|ZP_02959818.1| hypothetical protein PROSTU_01715 [Providencia stuartii ATCC
          25827]
 gi|188020499|gb|EDU58539.1| hypothetical protein PROSTU_01715 [Providencia stuartii ATCC
          25827]
          Length = 83

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G++KW+N  KG+GFI PE     G+D+F H S +   G   L  GQ V +
Sbjct: 1  METGTVKWFNNAKGFGFICPE---NGGEDIFAHYSCIQMEGYRTLKAGQKVNF 50


>gi|54298263|ref|YP_124632.1| hypothetical protein lpp2321 [Legionella pneumophila str. Paris]
 gi|53752048|emb|CAH13474.1| hypothetical protein lpp2321 [Legionella pneumophila str. Paris]
          Length = 69

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG +KW+N DKG+GFI       SG D F+H S++ S G   L +G  V +
Sbjct: 6  RGKVKWFNKDKGFGFI-----ESSGKDYFVHFSSIQSGGFKTLPDGATVLF 51


>gi|310287193|ref|YP_003938451.1| Cold shock protein [Bifidobacterium bifidum S17]
 gi|313139892|ref|ZP_07802085.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          bifidum NCIMB 41171]
 gi|309251129|gb|ADO52877.1| Cold shock protein [Bifidobacterium bifidum S17]
 gi|313132402|gb|EFR50019.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          bifidum NCIMB 41171]
          Length = 89

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++K+++  KGYGFIT   S   GDDVF+H S + + G   L EG  V Y+
Sbjct: 25 QGTVKFFSAGKGYGFIT---SDAGGDDVFVHYSVIQADGFKTLNEGDKVEYE 73


>gi|114563427|ref|YP_750940.1| cold-shock DNA-binding domain-containing protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114334720|gb|ABI72102.1| cold-shock DNA-binding protein family [Shewanella frigidimarina
          NCIMB 400]
 gi|149675688|dbj|BAF64723.1| cold shock protein [Shewanella livingstonensis]
          Length = 68

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   + G+DVF H S +   G   L  GQ V ++ V+    G 
Sbjct: 4  GTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVCFE-VEEGPKGM 59

Query: 65 YSA 67
          +++
Sbjct: 60 HAS 62


>gi|45443632|ref|NP_995171.1| major cold shock protein Cspa1 [Yersinia pestis biovar Microtus
          str. 91001]
 gi|145597567|ref|YP_001161643.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides F]
 gi|153997418|ref|ZP_02022518.1| major cold shock protein Cspa1 [Yersinia pestis CA88-4125]
 gi|162420218|ref|YP_001605761.1| cold shock DNA-binding domain-containing protein [Yersinia pestis
          Angola]
 gi|165927555|ref|ZP_02223387.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165937557|ref|ZP_02226120.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166012240|ref|ZP_02233138.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166214174|ref|ZP_02240209.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167401977|ref|ZP_02307460.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167420574|ref|ZP_02312327.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167425550|ref|ZP_02317303.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|170022695|ref|YP_001719200.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|218930654|ref|YP_002348529.1| major cold shock protein Cspa1 [Yersinia pestis CO92]
 gi|229836787|ref|ZP_04456952.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides A]
 gi|229839313|ref|ZP_04459472.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
          str. PEXU2]
 gi|229899877|ref|ZP_04515018.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
          str. India 195]
 gi|229904188|ref|ZP_04519299.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516]
 gi|270488627|ref|ZP_06205701.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|45438502|gb|AAS64048.1| major cold shock protein Cspa1 [Yersinia pestis biovar Microtus
          str. 91001]
 gi|115349265|emb|CAL22232.1| major cold shock protein Cspa1 [Yersinia pestis CO92]
 gi|145209263|gb|ABP38670.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|149289055|gb|EDM39135.1| major cold shock protein Cspa1 [Yersinia pestis CA88-4125]
 gi|162353033|gb|ABX86981.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
 gi|165914662|gb|EDR33276.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165920449|gb|EDR37726.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165988859|gb|EDR41160.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166204661|gb|EDR49141.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166961380|gb|EDR57401.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167048563|gb|EDR59971.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167055564|gb|EDR65357.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169749229|gb|ACA66747.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|229678306|gb|EEO74411.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516]
 gi|229687369|gb|EEO79444.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
          str. India 195]
 gi|229695679|gb|EEO85726.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
          str. PEXU2]
 gi|229705730|gb|EEO91739.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides A]
 gi|270337131|gb|EFA47908.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|320017193|gb|ADW00765.1| major cold shock protein Cspa1 [Yersinia pestis biovar Medievalis
          str. Harbin 35]
          Length = 70

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 SAVNVIAL 70


>gi|268678896|ref|YP_003303327.1| Cold-shock protein DNA-binding protein [Sulfurospirillum
          deleyianum DSM 6946]
 gi|268616927|gb|ACZ11292.1| Cold-shock protein DNA-binding protein [Sulfurospirillum
          deleyianum DSM 6946]
          Length = 71

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTEGQLVTYD 55
          G++KW+N +KG+GFI P    + G DVF+H   V   G    +L EGQ VTY+
Sbjct: 6  GTVKWFNNEKGFGFIQP---NDGGKDVFVHFRQVNRTGYGRVSLAEGQKVTYE 55


>gi|226954179|ref|ZP_03824643.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|294650207|ref|ZP_06727581.1| cold shock family protein [Acinetobacter haemolyticus ATCC 19194]
 gi|226835048|gb|EEH67431.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|292823913|gb|EFF82742.1| cold shock family protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 69

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI      +SG DVF H S + S G   L EGQ V++
Sbjct: 7  GTVKWFNETKGFGFI----QADSGQDVFAHFSEIQSNGFKVLHEGQRVSF 52


>gi|94499669|ref|ZP_01306206.1| Cold shock protein [Oceanobacter sp. RED65]
 gi|94428423|gb|EAT13396.1| Cold shock protein [Oceanobacter sp. RED65]
          Length = 92

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N  KGYGFI    S E G+D+F H S++   G   L  GQ V +D   +D
Sbjct: 1  MQTGKVKWFNNAKGYGFIL---SDEGGEDLFAHYSSIQVEGYKTLKAGQSVQFDTKPSD 56


>gi|187478817|ref|YP_786841.1| cold shock protein [Bordetella avium 197N]
 gi|115423403|emb|CAJ49937.1| cold shock protein [Bordetella avium 197N]
          Length = 69

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N +KG+GFI PE     G D+F H S +   G  +L E Q V++
Sbjct: 6  GVVKWFNSEKGFGFIAPE---SGGKDLFAHFSEIVGTGFKSLEENQRVSF 52


>gi|317491427|ref|ZP_07949863.1| cold shock domain-containing protein CspD [Enterobacteriaceae
          bacterium 9_2_54FAA]
 gi|316920974|gb|EFV42297.1| cold shock domain-containing protein CspD [Enterobacteriaceae
          bacterium 9_2_54FAA]
          Length = 73

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    + G+D+F H S++   G   L  GQ V ++ VQ   
Sbjct: 1  METGTVKWFNNAKGFGFICP---LKGGEDIFAHYSSIQMEGYRTLKAGQQVQFN-VQEGP 56

Query: 62 NGKYS 66
           G ++
Sbjct: 57 KGNHA 61


>gi|296395233|ref|YP_003660117.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rotundus DSM 44985]
 gi|296182380|gb|ADG99286.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
          44985]
          Length = 145

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ DKG+GF+T     E GDDV++  SA+  AG+  L  GQ+V +      A
Sbjct: 5  VPTGKVKWYSADKGFGFLT----QEDGDDVYVGSSAL-PAGVDELKPGQVVEFGM----A 55

Query: 62 NGKYSAENLKL 72
          +G+   + L +
Sbjct: 56 DGRRGPQALSI 66


>gi|330981383|gb|EGH79486.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 91

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G +KW+N  KG+GFI  EG+ E   D+F H SA+   G   L  GQ V ++  Q
Sbjct: 3  EGKVKWFNNAKGFGFINAEGNNE---DLFAHFSAIEMDGYKTLKAGQKVRFEVAQ 54


>gi|224282734|ref|ZP_03646056.1| cold-shock DNA-binding domain protein [Bifidobacterium bifidum
          NCIMB 41171]
 gi|311064055|ref|YP_003970780.1| cold shock protein CspA [Bifidobacterium bifidum PRL2010]
 gi|310866374|gb|ADP35743.1| CspA Cold shock protein [Bifidobacterium bifidum PRL2010]
          Length = 67

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++K+++  KGYGFIT   S   GDDVF+H S + + G   L EG  V Y+
Sbjct: 3  QGTVKFFSAGKGYGFIT---SDAGGDDVFVHYSVIQADGFKTLNEGDKVEYE 51


>gi|194246689|ref|YP_002004328.1| Cold shock-like protein [Candidatus Phytoplasma mali]
 gi|193807046|emb|CAP18482.1| Cold shock-like protein [Candidatus Phytoplasma mali]
          Length = 85

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G  +W+N DKG+GF+    S     D+F H++ +   G  +L EG+ V +  VQ +  G
Sbjct: 14 KGVCRWFNKDKGFGFLQKLDS--DSQDIFFHQTDIKCEGFRSLDEGEEVEFTLVQGE-KG 70

Query: 64 KYSAENLKLVPKS 76
            + E ++   +S
Sbjct: 71 PQAIEIVRFTKQS 83


>gi|33592839|ref|NP_880483.1| cold shock-like protein [Bordetella pertussis Tohama I]
 gi|33572487|emb|CAE42059.1| cold shock-like protein [Bordetella pertussis Tohama I]
 gi|332382252|gb|AEE67099.1| cold shock-like protein [Bordetella pertussis CS]
          Length = 66

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N +KGYGFI P+  ++   D+F H S + S G  +L E Q V+++  Q
Sbjct: 4  GIVKWFNAEKGYGFIMPDDGSK---DLFAHYSEICSEGYKSLQENQRVSFEVGQ 54


>gi|332524835|ref|ZP_08401026.1| cold-shock DNA-binding protein family protein [Rubrivivax
          benzoatilyticus JA2]
 gi|332108135|gb|EGJ09359.1| cold-shock DNA-binding protein family protein [Rubrivivax
          benzoatilyticus JA2]
          Length = 70

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI P+   + G D+F H   +  +G   L E Q V ++  Q
Sbjct: 6  GTVKWFNEGKGFGFIAPD---DGGKDLFAHFKEIQGSGFKTLVENQRVEFEVTQ 56


>gi|260889081|ref|ZP_05900344.1| conserved domain protein [Leptotrichia hofstadii F0254]
 gi|260861141|gb|EEX75641.1| conserved domain protein [Leptotrichia hofstadii F0254]
          Length = 75

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFI    S E G+D FLH S +   G   + EG+ V++D
Sbjct: 13 GKVKWFNDKKGFGFI----SGEDGNDYFLHFSKINKEGFKTVNEGEEVSFD 59


>gi|33152145|ref|NP_873498.1| cold shock-like protein CspC [Haemophilus ducreyi 35000HP]
 gi|33148367|gb|AAP95887.1| cold shock-like protein CspC [Haemophilus ducreyi 35000HP]
          Length = 69

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+     G D+F+H S +  +    L EG  V ++ VQ+   G 
Sbjct: 6  GIVKWFNSTKGFGFITPD---LGGKDIFVHFSGIIGSNFRTLEEGAKVEFE-VQDSDRGP 61

Query: 65 YSAENLK 71
           SA N+K
Sbjct: 62 -SAVNVK 67


>gi|284007908|emb|CBA73854.1| cold shock-like protein [Arsenophonus nasoniae]
          Length = 70

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G++KW+N  KG+GFI PE     G+D+F H S++   G   L  GQ V +
Sbjct: 1  METGTVKWFNNAKGFGFICPE---NGGEDIFAHYSSIQMEGYRTLKAGQKVNF 50


>gi|251792619|ref|YP_003007345.1| cold shock domain-containing protein CspD [Aggregatibacter
          aphrophilus NJ8700]
 gi|247534012|gb|ACS97258.1| cold shock domain protein CspD [Aggregatibacter aphrophilus
          NJ8700]
          Length = 69

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KG+GFI+ EGS     D+F H S +   G  +L  GQ V ++ +  D
Sbjct: 4  GVVKWFNNAKGFGFISVEGSN---TDIFAHYSVIEMEGYRSLKAGQKVQFEVIHGD 56


>gi|257126384|ref|YP_003164498.1| cold-shock DNA-binding domain protein [Leptotrichia buccalis
          C-1013-b]
 gi|257050323|gb|ACV39507.1| cold-shock DNA-binding domain protein [Leptotrichia buccalis
          C-1013-b]
          Length = 65

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFI    S E G+D FLH S +   G   + EG+ V++D
Sbjct: 3  GKVKWFNDKKGFGFI----SGEDGNDYFLHFSKINKEGFKTVNEGEEVSFD 49


>gi|149192133|ref|ZP_01870355.1| cold shock-like protein CspD [Vibrio shilonii AK1]
 gi|148834036|gb|EDL51051.1| cold shock-like protein CspD [Vibrio shilonii AK1]
          Length = 73

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI PEG  E G D+F H S +   G   L  GQ V Y+
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIKMDGYRTLKAGQQVNYE 51


>gi|71278479|ref|YP_267487.1| cold shock DNA-binding domain-containing protein [Colwellia
          psychrerythraea 34H]
 gi|71144219|gb|AAZ24692.1| cold-shock DNA-binding domain family protein [Colwellia
          psychrerythraea 34H]
          Length = 69

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +K++N  KG+GFI      E+G DVF+H SA++  G   L +GQ VT+   Q
Sbjct: 7  GKVKFFNETKGFGFI----EQENGPDVFVHFSAISGDGFRTLADGQAVTFTVKQ 56


>gi|120555865|ref|YP_960216.1| cold-shock DNA-binding domain-containing protein [Marinobacter
          aquaeolei VT8]
 gi|120325714|gb|ABM20029.1| cold shock protein E (CspE) [Marinobacter aquaeolei VT8]
          Length = 68

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G++K++N  KG+GFIT E    +G DVF+H S++   G   L EGQ V +
Sbjct: 5  KGNVKFFNEAKGFGFITRE----NGADVFVHYSSIQGGGFKTLAEGQEVEF 51


>gi|323136438|ref|ZP_08071520.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
           49242]
 gi|322398512|gb|EFY01032.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
           49242]
          Length = 224

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +KW++  KG+GF+    S + G DVF+H S +  +G+  L EGQ VT   V + A G+
Sbjct: 161 GKVKWFDETKGFGFVQ---SNDGGKDVFVHISILGPSGVSRLVEGQPVTMQVV-DTAKGR 216



 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
          +KW+  DKG+GF+  E +  +G D FLH  AV +AG   L  G
Sbjct: 57 VKWFKTDKGFGFV--ELANGTG-DAFLHIGAVQAAGYDTLPPG 96


>gi|261343363|ref|ZP_05971008.1| cold shock domain protein CspD [Providencia rustigianii DSM 4541]
 gi|282568501|gb|EFB74036.1| cold shock domain protein CspD [Providencia rustigianii DSM 4541]
          Length = 79

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G++KW+N  KG+GFI P   ++ G+D+F H S +   G   L  GQ V +  +
Sbjct: 4  GTVKWFNNAKGFGFICP---SDGGEDIFAHYSCIQMEGYRTLKAGQKVNFSVI 53


>gi|315634348|ref|ZP_07889635.1| cold shock domain protein CspD [Aggregatibacter segnis ATCC
          33393]
 gi|315476938|gb|EFU67683.1| cold shock domain protein CspD [Aggregatibacter segnis ATCC
          33393]
          Length = 69

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI+ EGS     D+F H S +   G  +L  GQ V ++ +  D    
Sbjct: 4  GVVKWFNNAKGFGFISAEGSD---TDIFAHYSVIEMDGYRSLKAGQKVQFEVIHGDKG-- 58

Query: 65 YSAENLKLVP 74
            +   K+VP
Sbjct: 59 --SHATKIVP 66


>gi|298717348|ref|YP_003729990.1| cold shock-like protein cspI [Pantoea vagans C9-1]
 gi|304395197|ref|ZP_07377081.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|304395198|ref|ZP_07377082.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|298361537|gb|ADI78318.1| Cold shock-like protein cspI [Pantoea vagans C9-1]
 gi|304357450|gb|EFM21813.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|304357451|gb|EFM21814.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
          Length = 70

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFI+P+  ++   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFDAGKGFGFISPQDGSK---DVFVHFSAIQSNDYKTLDEGQQVEF-TIENGAKGP 62

Query: 65 YSA 67
           +A
Sbjct: 63 SAA 65


>gi|71027909|ref|XP_763598.1| cold shock protein [Theileria parva strain Muguga]
 gi|68350551|gb|EAN31315.1| cold shock protein, putative [Theileria parva]
          Length = 94

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G  KW+N  KGYGFIT     E+G+DVF+H+S + + G  +L E + V  + + ++   K
Sbjct: 6  GVCKWFNNKKGYGFIT----LENGEDVFVHQSEIYADGFRSLRENEKVELEVIMDNNRKK 61


>gi|229828454|ref|ZP_04454523.1| hypothetical protein GCWU000342_00515 [Shuttleworthia satelles
          DSM 14600]
 gi|229793048|gb|EEP29162.1| hypothetical protein GCWU000342_00515 [Shuttleworthia satelles
          DSM 14600]
          Length = 67

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW++  KGYGFI    S E+G DVF+H S +   G   L EG  V ++   +D
Sbjct: 3  KGTVKWFDDRKGYGFI----SDEAGKDVFVHFSKLNMEGFKTLKEGATVDFEVEDSD 55


>gi|88703593|ref|ZP_01101309.1| cold-shock domain family protein [Congregibacter litoralis KT71]
 gi|88702307|gb|EAQ99410.1| cold-shock domain family protein [Congregibacter litoralis KT71]
          Length = 189

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI      E+GD++F+H  ++   G  +L +G  V Y  V  D
Sbjct: 126 GTVKWFNGTKGFGFII----RENGDEIFVHHRSIIGEGRRSLRDGAPVRYRVVTTD 177


>gi|146307418|ref|YP_001187883.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina ymp]
 gi|145575619|gb|ABP85151.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
          Length = 89

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  E   D+F H SA+   G   L  GQ V ++ VQ
Sbjct: 4  GKVKWFNNAKGYGFILADGRDE---DLFAHYSAIQMDGYKTLKAGQPVRFEIVQ 54


>gi|325121558|gb|ADY81081.1| probable cold-shock protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 71

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI    + + G D+F H + + + G   L EGQ V +  VQ
Sbjct: 6  GTVKWFNETKGFGFI----AADEGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQ 55


>gi|256380782|ref|YP_003104442.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
 gi|255925085|gb|ACU40596.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
          Length = 67

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KGYGFI     +  G DVF+H S +   G   L E Q V ++  Q
Sbjct: 4  GTVKWFNAEKGYGFIA---QSNGGPDVFVHYSEIQGNGFRTLEENQRVEFEIGQ 54


>gi|327481387|gb|AEA84697.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 69

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KGYGFI       +G DVF+H  A+   G  +L EGQ V +  +Q
Sbjct: 7  GTVKWFNDAKGYGFI----QRGNGADVFVHYRAIRGDGHRSLAEGQQVEFSVIQ 56


>gi|282860603|ref|ZP_06269669.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|282564339|gb|EFB69875.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
          Length = 127

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + GDDVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGDDVFVH-SSVLPAGVDALKPGQRVEFGVV 51


>gi|15602346|ref|NP_245418.1| CspD [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720739|gb|AAK02565.1| CspD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 69

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI+ EG+     D+F H S +   G  +L  GQ V ++ V  D  G 
Sbjct: 4  GVVKWFNNAKGFGFISAEGTDA---DIFAHYSVIEMEGYRSLKAGQKVQFEVVHGD-KGS 59

Query: 65 YSAENLKLV 73
          ++ + + +V
Sbjct: 60 HATKIIPIV 68


>gi|46202227|ref|ZP_00053533.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 167

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          ++KW+N  KG+GF+ P   ++   D FLH SA+  AGL  + EG  +  D 
Sbjct: 19 TVKWFNASKGFGFVAP---SDGSPDAFLHISALERAGLTQVAEGATLVVDL 66



 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           G +K+++ +KG+GF+  +   E G DVF+H  A+  +G+  L  GQ V
Sbjct: 104 GVVKFFSAEKGFGFVACD---EGGKDVFVHVKALERSGIKTLESGQRV 148


>gi|293608625|ref|ZP_06690928.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829198|gb|EFF87560.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 75

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI    + + G D+F H + + + G   L EGQ V +  VQ
Sbjct: 10 GTVKWFNETKGFGFI----AADEGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQ 59


>gi|270157314|ref|ZP_06185971.1| cold shock protein CspB [Legionella longbeachae D-4968]
 gi|289164302|ref|YP_003454440.1| stress protein, member of the CspA-family [Legionella longbeachae
          NSW150]
 gi|269989339|gb|EEZ95593.1| cold shock protein CspB [Legionella longbeachae D-4968]
 gi|288857475|emb|CBJ11305.1| stress protein, member of the CspA-family [Legionella longbeachae
          NSW150]
          Length = 68

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG +KW+N  KG+GFI       SG D F+H SA+ S+G  +L EG  V +
Sbjct: 6  RGKVKWFNESKGFGFI-----ENSGKDYFVHFSAIQSSGFKSLPEGANVLF 51


>gi|52841294|ref|YP_095093.1| cold shock domain-contain protein [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|52628405|gb|AAU27146.1| cold shock domain family protein [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
          Length = 87

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG +KW+N DKG+GFI       SG D F+H S++ S G   L +G  V +
Sbjct: 20 RGKVKWFNKDKGFGFIES-----SGKDYFVHFSSIQSNGFKTLPDGATVLF 65


>gi|126174687|ref|YP_001050836.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS155]
 gi|153000986|ref|YP_001366667.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS185]
 gi|160875699|ref|YP_001555015.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS195]
 gi|217973054|ref|YP_002357805.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS223]
 gi|304409064|ref|ZP_07390685.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
 gi|307303067|ref|ZP_07582822.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
 gi|125997892|gb|ABN61967.1| cold-shock DNA-binding protein family [Shewanella baltica OS155]
 gi|151365604|gb|ABS08604.1| putative cold-shock DNA-binding domain protein [Shewanella
          baltica OS185]
 gi|160861221|gb|ABX49755.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195]
 gi|217498189|gb|ACK46382.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223]
 gi|304352885|gb|EFM17282.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
 gi|306913427|gb|EFN43849.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
 gi|315267888|gb|ADT94741.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678]
          Length = 68

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI P+   + G+DVF H S +   G   L  GQ V ++
Sbjct: 4  GTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVQFE 51


>gi|330954575|gb|EGH54835.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7]
          Length = 92

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           G +KW+N  KG+GFI  EG  +S +D+F+H SA+   G   L  GQ V ++
Sbjct: 3  EGKVKWFNNAKGFGFINAEG--KSDEDLFVHFSAIEMEGYKTLKAGQKVRFE 52


>gi|89068841|ref|ZP_01156224.1| cold shock DNA-binding domain protein [Oceanicola granulosus
          HTCC2516]
 gi|89045611|gb|EAR51674.1| cold shock DNA-binding domain protein [Oceanicola granulosus
          HTCC2516]
          Length = 171

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW++P KG+GFI  E   + G D+ LH + + + G  ++ +G  +  + VQ+ 
Sbjct: 1  MTVTGTVKWFDPAKGFGFIVAE---DGGPDILLHANVLRNFGQSSVADGSGIVVE-VQDT 56

Query: 61 ANGKYSAENLKLVP 74
            GK +   ++L P
Sbjct: 57 PRGKQAVAVVELTP 70



 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G  E   DVF+H   +  +GL +L  G+ ++   V +   GK +
Sbjct: 100 VKWFDKGKGFGFANVFGLAE---DVFVHIEVLRRSGLSDLQPGEAISL-RVMDGKRGKMA 155

Query: 67  AE 68
            E
Sbjct: 156 ME 157


>gi|330815856|ref|YP_004359561.1| cold-shock DNA-binding protein family protein [Burkholderia
          gladioli BSR3]
 gi|327368249|gb|AEA59605.1| cold-shock DNA-binding protein family protein [Burkholderia
          gladioli BSR3]
          Length = 67

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V++D V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIKMDGFKTLKENQRVSFD-VKTGPKGK 59

Query: 65 YSAENLKLV 73
           +A N++ V
Sbjct: 60 QAA-NIQAV 67


>gi|40062712|gb|AAR37625.1| cold shock DNA-binding domain protein [uncultured marine
          bacterium 314]
          Length = 67

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N  KGYGFI  E   +   DVF+H SA  +A L  L EG  +T++    D
Sbjct: 1  MSIKGKVKWFNGAKGYGFIEREDKEK---DVFVHASAAEAASL-QLNEGDALTFEVESGD 56


>gi|289679173|ref|ZP_06500063.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae FF5]
 gi|330900613|gb|EGH32032.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 91

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G +KW+N  KG+GFI  EG+ E   D+F H SA+   G   L  GQ V ++  Q
Sbjct: 3  EGKVKWFNNAKGFGFINAEGNDE---DLFAHFSAIEMDGYKTLKAGQKVRFEVAQ 54


>gi|134097204|ref|YP_001102865.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|291005339|ref|ZP_06563312.1| cold shock protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133909827|emb|CAL99939.1| cold-shock DNA-binding domain protein [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 130

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KG+GF+T +G    G+DV++  SA+ S G+ +L  GQ V +D  Q    G+
Sbjct: 4  GRVKWFDAEKGFGFVTQDG----GEDVYVRASALPS-GVESLKTGQRVDFDMAQ----GR 54

Query: 65 YSAENLKL 72
             + LK+
Sbjct: 55 RGPQALKV 62


>gi|160879311|ref|YP_001558279.1| cold-shock DNA-binding domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160427977|gb|ABX41540.1| cold-shock DNA-binding domain protein [Clostridium
          phytofermentans ISDg]
          Length = 70

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 5/57 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
          G++KWY+ ++GYGF+    ST  G DVFLH S +   G    + EG+ + +D ++ +
Sbjct: 6  GTVKWYDSERGYGFV----STNDGRDVFLHHSQIKEKGFDKEVHEGESIGFDIIEQE 58


>gi|332283634|ref|YP_004415545.1| cold shock protein [Pusillimonas sp. T7-7]
 gi|330427587|gb|AEC18921.1| cold shock protein [Pusillimonas sp. T7-7]
          Length = 69

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N +KG+GFI PE     G D+F H + +   G  +L E Q V+Y
Sbjct: 6  GIVKWFNNEKGFGFIKPE---SGGKDLFAHHTDIIGTGFKSLEENQRVSY 52


>gi|290476552|ref|YP_003469457.1| low-temperature-responsive gene, nucleic acid-binding domain
          [Xenorhabdus bovienii SS-2004]
 gi|289175890|emb|CBJ82693.1| low-temperature-responsive gene, nucleic acid-binding domain
          [Xenorhabdus bovienii SS-2004]
          Length = 70

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFI+PE  ++   DVF+H SA+       L EGQ V +  +++ A G 
Sbjct: 7  GLVKWFDAGKGFGFISPEDGSK---DVFVHFSAIQGNDFKTLDEGQKVEFS-IESGAKGP 62

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 63 SAANVIAL 70


>gi|330446455|ref|ZP_08310107.1| cold shock domain protein CspD [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328490646|dbj|GAA04604.1| cold shock domain protein CspD [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 73

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE   +   D+F H S +   G   L  GQ V Y+ VQ    G 
Sbjct: 4  GTVKWFNNAKGFGFICPE---DGEGDIFAHYSTIQMEGYRTLKAGQQVNYE-VQAGPKGY 59

Query: 65 YSAE 68
          +++E
Sbjct: 60 HASE 63


>gi|307823754|ref|ZP_07653982.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307735048|gb|EFO05897.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 71

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDANG 63
          G +KW+N DKG+GFI      +SG DVF+H   + ++G + +L EGQ V +   Q     
Sbjct: 7  GIVKWFNSDKGFGFI----EQQSGPDVFVHFQQINNSGGYKSLDEGQKVQFSVAQGQKGP 62

Query: 64 KYSAENLKLV 73
          +  AEN+ ++
Sbjct: 63 Q--AENVSVI 70


>gi|297624347|ref|YP_003705781.1| cold-shock DNA-binding domain-containing protein [Truepera
          radiovictrix DSM 17093]
 gi|297165527|gb|ADI15238.1| cold-shock DNA-binding domain protein [Truepera radiovictrix DSM
          17093]
          Length = 84

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KG+GFI  +G    G DVF H SA+ ++G  +L EG  V ++  Q      
Sbjct: 4  GRVKWFSNEKGFGFIEQDG---GGADVFCHFSAINASGYRSLNEGDEVEFEVEQGQKG-- 58

Query: 65 YSAENLKLV 73
            A+N++++
Sbjct: 59 LQAKNVEVI 67


>gi|254496781|ref|ZP_05109636.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
 gi|254354006|gb|EET12686.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
          Length = 68

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG +KW+N  KG+GFI       SG D F+H SA+ S+G   L EG  V +
Sbjct: 6  RGKVKWFNESKGFGFI-----ENSGKDYFVHFSAIQSSGFKTLPEGANVLF 51


>gi|300722511|ref|YP_003711801.1| DNA replication inhibitor [Xenorhabdus nematophila ATCC 19061]
 gi|297629018|emb|CBJ89603.1| DNA replication inhibitor, nucleic acid-binding domain
          [Xenorhabdus nematophila ATCC 19061]
          Length = 76

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI P   +  GDD+F H S +   G   L  GQ V +   Q
Sbjct: 4  GTVKWFNNAKGFGFICP---SSGGDDIFAHYSTIQMDGYRTLKAGQKVNFSVHQ 54


>gi|296272840|ref|YP_003655471.1| cold-shock DNA-binding domain-containing protein [Arcobacter
          nitrofigilis DSM 7299]
 gi|296097014|gb|ADG92964.1| cold-shock DNA-binding domain protein [Arcobacter nitrofigilis
          DSM 7299]
          Length = 72

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  E     G DVF+H   + S G    +L EGQ VT++  +
Sbjct: 7  GTVKWFNSEKGFGFIEQE---NGGKDVFVHYRQINSTGYGRVSLNEGQKVTFEVAE 59


>gi|170596965|ref|XP_001902961.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi]
 gi|158589027|gb|EDP28189.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi]
          Length = 290

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 7/59 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
           +G++KW+N   GYGFI      ++GDD+F+H++AV        L +L +G+ V +D V+
Sbjct: 59  QGTVKWFNVKNGYGFIN---RADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVE 114


>gi|302523740|ref|ZP_07276082.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
 gi|302432635|gb|EFL04451.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
          Length = 67

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI  +G      DVF+H S +   G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIAQDGGE---GDVFVHYSEIEGRGFRTLEENQRVEFEVGQ 54


>gi|227111587|ref|ZP_03825243.1| cold shock protein [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
 gi|253688227|ref|YP_003017417.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|251754805|gb|ACT12881.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
          Length = 70

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++  KG+GFITP+  ++   DVF+H SA+ S     L EGQ V +
Sbjct: 7  GLVKWFDAGKGFGFITPDNGSK---DVFVHFSAIQSNDFKTLDEGQKVEF 53


>gi|95929274|ref|ZP_01312018.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
 gi|95134772|gb|EAT16427.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
          Length = 66

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           G++KW+N  KG+GFI      ++G DVF+H S +   G  +L EG+ VT++
Sbjct: 3  EGTVKWFNDAKGFGFI----EQDNGPDVFVHFSEIQGDGFKSLAEGERVTFE 50


>gi|300716061|ref|YP_003740864.1| Cold-shock DNA-binding protein [Erwinia billingiae Eb661]
 gi|299061897|emb|CAX59013.1| Cold-shock DNA-binding protein [Erwinia billingiae Eb661]
          Length = 75

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI P      G+D+F H S +   G   L  GQ V +D
Sbjct: 4  GTVKWFNNAKGFGFICP---VSGGEDIFAHYSTIKMDGYRTLKAGQQVQFD 51


>gi|261868109|ref|YP_003256031.1| cold shock domain-containing protein CspD [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|293390022|ref|ZP_06634356.1| cold shock domain protein CspD [Aggregatibacter
          actinomycetemcomitans D7S-1]
 gi|261413441|gb|ACX82812.1| cold shock domain protein CspD [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|290950556|gb|EFE00675.1| cold shock domain protein CspD [Aggregatibacter
          actinomycetemcomitans D7S-1]
          Length = 69

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI+ EGS     D+F H S +   G  +L  GQ V ++ +  D    
Sbjct: 4  GVVKWFNNAKGFGFISVEGSD---TDIFAHYSVIEMEGYRSLKAGQKVRFEVIHGDKG-- 58

Query: 65 YSAENLKLVP 74
            +   K++P
Sbjct: 59 --SHATKIIP 66


>gi|269123694|ref|YP_003306271.1| cold-shock DNA-binding domain-containing protein [Streptobacillus
          moniliformis DSM 12112]
 gi|268315020|gb|ACZ01394.1| cold-shock DNA-binding domain protein [Streptobacillus
          moniliformis DSM 12112]
          Length = 65

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFI    S E G D FLH S +   G   + EG+ V +D
Sbjct: 3  GKVKWFNEKKGFGFI----SGEDGKDYFLHFSKINKGGFKTVNEGEEVEFD 49


>gi|326383466|ref|ZP_08205153.1| cold shock protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326197872|gb|EGD55059.1| cold shock protein [Gordonia neofelifaecis NRRL B-59395]
          Length = 67

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P    + GD DVF+H S +   G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIAP----DDGDADVFVHYSEIQGNGFRTLEEDQRVEFEVGQ 54


>gi|182420146|ref|ZP_02951377.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237668829|ref|ZP_04528813.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182375948|gb|EDT73538.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237657177|gb|EEP54733.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 69

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 5/57 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          G++KWY+ +KGYGFI    S + G+DVF H S +   G   +L EG+ VT+   ++D
Sbjct: 6  GTVKWYDREKGYGFI----SCDEGNDVFAHHSQIKDNGPEKDLKEGESVTFSIEESD 58


>gi|116617815|ref|YP_818186.1| cold-shock DNA-binding protein family protein [Leuconostoc
          mesenteroides subsp. mesenteroides ATCC 8293]
 gi|227432308|ref|ZP_03914301.1| cold shock protein Csp [Leuconostoc mesenteroides subsp. cremoris
          ATCC 19254]
 gi|116096662|gb|ABJ61813.1| cold-shock DNA-binding protein family [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
 gi|227351914|gb|EEJ42147.1| cold shock protein Csp [Leuconostoc mesenteroides subsp. cremoris
          ATCC 19254]
          Length = 74

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++K +  ++GYG+ITP+   E GDDVF+H + +   G  +L +G+ V Y  VQ
Sbjct: 4  GTVKIWQKERGYGYITPD---EGGDDVFVHFNGIDMDGFKSLIQGEKVAYVLVQ 54


>gi|330722048|gb|EGG99970.1| Cold shock protein CspA [gamma proteobacterium IMCC2047]
          Length = 69

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G++KW+N  KGYGFI        G DVF+H  A+   G   L +GQ V Y  V++
Sbjct: 7  GTVKWFNNAKGYGFI----EHHDGQDVFVHYRAIRGEGYRKLNDGQEVEYSIVES 57


>gi|37725749|gb|AAO32343.1| cold shock protein 3 [Streptomyces sp. AA8321]
          Length = 65

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N +KG+GFI  +     G DVF H S + ++G  +L E Q V ++  Q
Sbjct: 4  GTVKWFNAEKGFGFIEQD---TGGPDVFAHYSNIRASGFRSLEEAQRVEFNVTQ 54


>gi|255535684|ref|YP_003096055.1| Cold shock protein CspA [Flavobacteriaceae bacterium 3519-10]
 gi|255341880|gb|ACU07993.1| Cold shock protein CspA [Flavobacteriaceae bacterium 3519-10]
          Length = 63

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFITP      G+D+F+H S V +     + E   VTY+  Q   
Sbjct: 1  MQEGTVKFFNETKGFGFITP---LNGGEDIFVHTSGVNTK----IRENDKVTYEVQQ--G 51

Query: 62 NGKYSAENLKLV 73
          N   +A N+KLV
Sbjct: 52 NKGLNAVNVKLV 63


>gi|148360277|ref|YP_001251484.1| cold shock domain family transporter protein [Legionella
          pneumophila str. Corby]
 gi|148282050|gb|ABQ56138.1| cold shock domain family protein [Legionella pneumophila str.
          Corby]
          Length = 73

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG +KW+N DKG+GFI       SG D F+H S++ S G   L +G  V +
Sbjct: 6  RGKVKWFNKDKGFGFI-----ESSGKDYFVHFSSIQSNGFKTLPDGATVLF 51


>gi|50121397|ref|YP_050564.1| cold shock protein [Pectobacterium atrosepticum SCRI1043]
 gi|227328628|ref|ZP_03832652.1| cold shock protein [Pectobacterium carotovorum subsp. carotovorum
          WPP14]
 gi|261821404|ref|YP_003259510.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
 gi|49611923|emb|CAG75372.1| cold shock protein [Pectobacterium atrosepticum SCRI1043]
 gi|261605417|gb|ACX87903.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
          Length = 70

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++  KG+GFITP+  ++   DVF+H SA+ S     L EGQ V +
Sbjct: 7  GLVKWFDAGKGFGFITPDNGSK---DVFVHFSAIQSNDFKTLDEGQKVEF 53


>gi|300856488|ref|YP_003781472.1| putative cold shock protein CspA [Clostridium ljungdahlii DSM
          13528]
 gi|300436603|gb|ADK16370.1| predicted cold shock protein CspA [Clostridium ljungdahlii DSM
          13528]
          Length = 67

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N +KG+GFI   G     +DVF+H +A+ S     NL EGQ V +D V+    G
Sbjct: 4  GTVKWFNSEKGFGFIEVPGE----NDVFVHFTAIQSDEPRKNLEEGQKVQFD-VEEGPKG 58

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 59 LQAANVVKL 67


>gi|257057657|ref|YP_003135489.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
 gi|256587529|gb|ACU98662.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
          Length = 67

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI  +G      DVF+H S +   G   L E Q V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFIAQDGGE---GDVFVHYSEIEGRGFRTLEENQRVEFEVGQ 54


>gi|254506150|ref|ZP_05118294.1| cold shock domain protein CspD [Vibrio parahaemolyticus 16]
 gi|219550968|gb|EED27949.1| cold shock domain protein CspD [Vibrio parahaemolyticus 16]
          Length = 73

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI PEG  E G DVF H S +   G   L  GQ V ++
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DVFAHYSTIQMDGYRTLKAGQQVNFE 51


>gi|152992263|ref|YP_001357984.1| cold shock protein [Sulfurovum sp. NBC37-1]
 gi|151424124|dbj|BAF71627.1| cold shock protein [Sulfurovum sp. NBC37-1]
          Length = 72

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA--SAGLFNLTEGQLVTYD 55
          G++KW+N +KGYGFI  E     G DVF+H   V   + G   L EGQ VT++
Sbjct: 7  GTVKWFNDEKGYGFIQQE---NGGSDVFVHFRQVNNDNGGRVTLAEGQAVTFE 56


>gi|293390613|ref|ZP_06634947.1| cold-shock DNA-binding domain protein [Aggregatibacter
          actinomycetemcomitans D7S-1]
 gi|290951147|gb|EFE01266.1| cold-shock DNA-binding domain protein [Aggregatibacter
          actinomycetemcomitans D7S-1]
          Length = 69

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P   ++   DVF+H S +       L EG  V Y+ VQ+   G 
Sbjct: 6  GTVKWFNSTKGFGFIAPANGSK---DVFVHFSGIVGNNFRTLNEGDRVAYN-VQDSQRGP 61

Query: 65 YSAE 68
           + E
Sbjct: 62 TAIE 65


>gi|254818580|ref|ZP_05223581.1| cold-shock DNA-binding protein family protein [Mycobacterium
          intracellulare ATCC 13950]
          Length = 67

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI P+   +   DVF+H S +   G  +L E Q V ++  Q
Sbjct: 3  QGTVKWFNGEKGFGFIAPD---DGSADVFVHYSEIQGGGYRSLEENQRVQFEVGQ 54


>gi|157962355|ref|YP_001502389.1| cold-shock DNA-binding domain-containing protein [Shewanella
          pealeana ATCC 700345]
 gi|167623650|ref|YP_001673944.1| cold-shock DNA-binding domain-containing protein [Shewanella
          halifaxensis HAW-EB4]
 gi|212634693|ref|YP_002311218.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3]
 gi|157847355|gb|ABV87854.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
          700345]
 gi|167353672|gb|ABZ76285.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis
          HAW-EB4]
 gi|212556177|gb|ACJ28631.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3]
          Length = 68

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI P+     G+DVF H S +   G   L  GQ V+++
Sbjct: 4  GTVKWFNNAKGFGFICPDA---GGEDVFAHYSTIEMEGYRTLKAGQPVSFE 51


>gi|56707540|ref|YP_169436.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU
          S4]
 gi|89255867|ref|YP_513229.1| cold shock protein [Francisella tularensis subsp. holarctica LVS]
 gi|110670011|ref|YP_666568.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC198]
 gi|115314356|ref|YP_763079.1| cold shock protein [Francisella tularensis subsp. holarctica
          OSU18]
 gi|118497088|ref|YP_898138.1| cold shock protein [Francisella tularensis subsp. novicida U112]
 gi|134302526|ref|YP_001122496.1| cold shock protein [Francisella tularensis subsp. tularensis
          WY96-3418]
 gi|156501851|ref|YP_001427916.1| cold-shock DNA-binding domain-containing protein [Francisella
          tularensis subsp. holarctica FTNF002-00]
 gi|167010093|ref|ZP_02275024.1| hypothetical protein Ftulh_05064 [Francisella tularensis subsp.
          holarctica FSC200]
 gi|187931344|ref|YP_001891328.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|194323385|ref|ZP_03057162.1| cold-shock' DNA-binding domain, putative [Francisella tularensis
          subsp. novicida FTE]
 gi|208778881|ref|ZP_03246227.1| cold-shock' DNA-binding domain protein, putative [Francisella
          novicida FTG]
 gi|224456609|ref|ZP_03665082.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|254367231|ref|ZP_04983259.1| cold shock protein [Francisella tularensis subsp. holarctica 257]
 gi|254368706|ref|ZP_04984719.1| cold shock protein [Francisella tularensis subsp. holarctica
          FSC022]
 gi|254370063|ref|ZP_04986069.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254372452|ref|ZP_04987941.1| hypothetical protein FTCG_00012 [Francisella tularensis subsp.
          novicida GA99-3549]
 gi|254373914|ref|ZP_04989396.1| cold shock DNA binding protein [Francisella novicida GA99-3548]
 gi|254874358|ref|ZP_05247068.1| cold shock protein cspC [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|290953337|ref|ZP_06557958.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          holarctica URFT1]
 gi|295313426|ref|ZP_06804032.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          holarctica URFT1]
 gi|56604032|emb|CAG45024.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU
          S4]
 gi|89143698|emb|CAJ78897.1| cold shock protein [Francisella tularensis subsp. holarctica LVS]
 gi|110320344|emb|CAL08407.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC198]
 gi|115129255|gb|ABI82442.1| cold shock protein [Francisella tularensis subsp. holarctica
          OSU18]
 gi|118422994|gb|ABK89384.1| cold shock protein, DNA-binding [Francisella novicida U112]
 gi|134050303|gb|ABO47374.1| cold shock DNA binding protein [Francisella tularensis subsp.
          tularensis WY96-3418]
 gi|134253049|gb|EBA52143.1| cold shock protein [Francisella tularensis subsp. holarctica 257]
 gi|151568307|gb|EDN33961.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|151570179|gb|EDN35833.1| hypothetical protein FTCG_00012 [Francisella novicida GA99-3549]
 gi|151571634|gb|EDN37288.1| cold shock DNA binding protein [Francisella novicida GA99-3548]
 gi|156252454|gb|ABU60960.1| 'Cold-shock' DNA-binding domain protein [Francisella tularensis
          subsp. holarctica FTNF002-00]
 gi|157121627|gb|EDO65797.1| cold shock protein [Francisella tularensis subsp. holarctica
          FSC022]
 gi|187712253|gb|ACD30550.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|194322240|gb|EDX19721.1| cold-shock' DNA-binding domain, putative [Francisella tularensis
          subsp. novicida FTE]
 gi|208744681|gb|EDZ90979.1| cold-shock' DNA-binding domain protein, putative [Francisella
          novicida FTG]
 gi|254840357|gb|EET18793.1| cold shock protein cspC [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|282158694|gb|ADA78085.1| hypothetical protein NE061598_02185 [Francisella tularensis
          subsp. tularensis NE061598]
 gi|328675625|gb|AEB28300.1| Cold shock protein CspA [Francisella cf. novicida 3523]
 gi|328676549|gb|AEB27419.1| Cold shock protein CspA [Francisella cf. novicida Fx1]
          Length = 67

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 6/52 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++K++N  KG+GFITPE     G DVF+H S +       L EGQ VT++
Sbjct: 6  QGTVKFFNEQKGFGFITPE---NGGKDVFVHISKLNGE---TLAEGQQVTFE 51


>gi|238026492|ref|YP_002910723.1| Cold-shock DNA-binding domain-containing protein [Burkholderia
          glumae BGR1]
 gi|237875686|gb|ACR28019.1| Cold-shock DNA-binding domain protein [Burkholderia glumae BGR1]
          Length = 67

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V++D V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKTGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|300857641|ref|YP_003782624.1| cold shock-like protein A [Corynebacterium pseudotuberculosis
          FRC41]
 gi|300685095|gb|ADK28017.1| cold shock-like protein A [Corynebacterium pseudotuberculosis
          FRC41]
 gi|302205379|gb|ADL09721.1| Cold-shock protein [Corynebacterium pseudotuberculosis C231]
 gi|302329933|gb|ADL20127.1| Cold-shock protein [Corynebacterium pseudotuberculosis 1002]
 gi|308275617|gb|ADO25516.1| Cold-shock protein [Corynebacterium pseudotuberculosis I19]
          Length = 67

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KG+GFI P+   +   DVF+H S +   G   L E Q V ++
Sbjct: 3  QGTVKWFNAEKGFGFIAPD---DGSADVFVHYSEIQGNGFRTLEENQKVEFE 51


>gi|296106679|ref|YP_003618379.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy]
 gi|295648580|gb|ADG24427.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 69

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG +KW+N DKG+GFI       SG D F+H S++ S G   L +G  V +
Sbjct: 6  RGKVKWFNKDKGFGFI-----ESSGKDYFVHFSSIQSDGFKTLPDGATVLF 51


>gi|157105290|ref|XP_001648803.1| RNA-binding protein lin-28 [Aedes aegypti]
 gi|108880147|gb|EAT44372.1| RNA-binding protein lin-28 [Aedes aegypti]
          Length = 157

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          RG  KW+N  KG+GFITP+   + G DVF+H+S +   G  +L + + V ++
Sbjct: 2  RGLCKWFNVIKGWGFITPD---DGGQDVFVHQSVLQMEGFRSLGQNEPVEFE 50


>gi|331017260|gb|EGH97316.1| cold shock domain family protein [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 77

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  +  +D+F H SA+   G   L  GQ V ++ +Q
Sbjct: 6  GKVKWFNNAKGYGFILEDGKPD--EDLFAHYSAIQMDGYKTLKAGQPVRFEIIQ 57


>gi|87122219|ref|ZP_01078102.1| cold-shock protein CspD [Marinomonas sp. MED121]
 gi|86162539|gb|EAQ63821.1| cold-shock protein CspD [Marinomonas sp. MED121]
          Length = 92

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +H G++KW+N  KGYGFI  E   E   D+F+H S++   G   L  GQ V++
Sbjct: 1  MHHGTVKWFNNAKGYGFIVSESFEE---DLFIHYSSILIDGYKTLKAGQSVSF 50


>gi|325578326|ref|ZP_08148461.1| cold shock domain protein CspD [Haemophilus parainfluenzae ATCC
          33392]
 gi|301156234|emb|CBW15705.1| cold shock protein homolog [Haemophilus parainfluenzae T3T1]
 gi|325160062|gb|EGC72191.1| cold shock domain protein CspD [Haemophilus parainfluenzae ATCC
          33392]
          Length = 69

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI+ EG      D+F H SA+   G  +L  GQ V ++ +  D    
Sbjct: 4  GVVKWFNNAKGFGFISAEGVD---TDIFAHYSAIEMDGYRSLKAGQRVQFEVIHGDKG-- 58

Query: 65 YSAENLKLVP 74
            +   K++P
Sbjct: 59 --SHATKIIP 66


>gi|256397197|ref|YP_003118761.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256363423|gb|ACU76920.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 131

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G IKWY+ +KG+GFIT     + G DVF+H SA+  AG   L  GQ V +
Sbjct: 4  GKIKWYDTEKGFGFIT----RDDGPDVFMHSSAL-PAGTAELKSGQRVEF 48


>gi|296445795|ref|ZP_06887747.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
           OB3b]
 gi|296256623|gb|EFH03698.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
           OB3b]
          Length = 221

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           G +KW++  KG+GF+    S + G DVF+H S +  +G+ +L EGQ VT   V
Sbjct: 158 GKVKWFDETKGFGFVQ---SNDGGKDVFVHISILGPSGVNHLAEGQPVTMQVV 207



 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
          +KW+ P+KG+GF+     T    D FLH  AV +AG   L  G
Sbjct: 60 VKWFKPEKGFGFVELGNGT---GDAFLHIGAVQAAGYDALPPG 99


>gi|54293997|ref|YP_126412.1| hypothetical protein lpl1057 [Legionella pneumophila str. Lens]
 gi|53753829|emb|CAH15294.1| hypothetical protein lpl1057 [Legionella pneumophila str. Lens]
 gi|307609825|emb|CBW99342.1| hypothetical protein LPW_11201 [Legionella pneumophila 130b]
          Length = 69

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG +KW+N DKG+GFI       SG D F+H S++ S G   L +G  V +
Sbjct: 6  RGKVKWFNKDKGFGFI-----ESSGKDYFVHFSSIQSDGFKTLPDGAAVLF 51


>gi|77462899|ref|YP_352403.1| cold-shock DNA-binding protein family protein [Rhodobacter
          sphaeroides 2.4.1]
 gi|126461790|ref|YP_001042904.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|221638771|ref|YP_002525033.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          KD131]
 gi|332557790|ref|ZP_08412112.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides WS8N]
 gi|77387317|gb|ABA78502.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          2.4.1]
 gi|126103454|gb|ABN76132.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17029]
 gi|221159552|gb|ACM00532.1| Cold-shock DNA-binding protein family precursor [Rhodobacter
          sphaeroides KD131]
 gi|332275502|gb|EGJ20817.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides WS8N]
          Length = 180

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 5/74 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +VH G +KW++P KG+GFI  E   E+G D+ LH + + + G  ++ +G  +T   VQ+ 
Sbjct: 10 LVH-GRVKWFDPAKGFGFIVTE---ENGADILLHANVLRNYGQSSVADGAGITVK-VQST 64

Query: 61 ANGKYSAENLKLVP 74
            G  + E +++ P
Sbjct: 65 QRGVQAVEVIEIEP 78



 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G +KW++  KG+GF    G  E   DVF+H   +  +G  +L  G+ V    ++
Sbjct: 106 GRVKWFDKGKGFGFANVFGRPE---DVFIHVEVLRMSGFADLAAGEAVALRIIE 156


>gi|319956775|ref|YP_004168038.1| cold-shock DNA-binding protein family [Nitratifractor salsuginis
          DSM 16511]
 gi|319419179|gb|ADV46289.1| cold-shock DNA-binding protein family [Nitratifractor salsuginis
          DSM 16511]
          Length = 72

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV--ASAGLFNLTEGQLVTYD 55
          +H G++KW+N +KGYGFI  +     G+DVF+H   V     G  +L EGQ V+++
Sbjct: 4  LHHGTVKWFNDEKGYGFIQQD---NGGNDVFVHFRQVNNPEGGRVSLYEGQKVSFE 56


>gi|28870519|ref|NP_793138.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|28853767|gb|AAO56833.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 89

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  +  +D+F H SA+   G   L  GQ V ++ +Q
Sbjct: 4  GKVKWFNNAKGYGFILEDGKPD--EDLFAHYSAIQMDGYKTLKAGQPVRFEIIQ 55


>gi|312881480|ref|ZP_07741272.1| cold shock-like protein CspD [Vibrio caribbenthicus ATCC
          BAA-2122]
 gi|309370846|gb|EFP98306.1| cold shock-like protein CspD [Vibrio caribbenthicus ATCC
          BAA-2122]
          Length = 73

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI PEG  E G DVF H S +   G   L  GQ V ++
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DVFAHYSTIQMDGYRTLKAGQQVNFE 51


>gi|255324199|ref|ZP_05365321.1| conserved hypothetical protein [Corynebacterium
          tuberculostearicum SK141]
 gi|311741029|ref|ZP_07714854.1| cold shock protein CspA [Corynebacterium pseudogenitalium ATCC
          33035]
 gi|255298715|gb|EET78010.1| conserved hypothetical protein [Corynebacterium
          tuberculostearicum SK141]
 gi|311303831|gb|EFQ79909.1| cold shock protein CspA [Corynebacterium pseudogenitalium ATCC
          33035]
          Length = 67

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++KW+N +KGYGFI      +   D+F+H S +  +G   L E Q VT++
Sbjct: 3  QGTVKWFNSEKGYGFIE---RADGEGDIFVHYSEIQGSGFRTLEENQQVTFE 51


>gi|323499460|ref|ZP_08104431.1| cold shock-like protein CspD [Vibrio sinaloensis DSM 21326]
 gi|323315447|gb|EGA68487.1| cold shock-like protein CspD [Vibrio sinaloensis DSM 21326]
          Length = 73

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI PEG  E G DVF H S +   G   L  GQ V ++
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DVFAHYSTIQMDGYRTLKAGQQVNFE 51


>gi|83313007|ref|YP_423271.1| cold shock protein [Magnetospirillum magneticum AMB-1]
 gi|82947848|dbj|BAE52712.1| Cold shock protein [Magnetospirillum magneticum AMB-1]
          Length = 200

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          ++KW+N  KG+GF+ P   ++   D FLH SA+  AGL  + EG  +  D 
Sbjct: 52 TVKWFNASKGFGFVAP---SDGSPDAFLHISALERAGLTQVAEGATLVVDL 99



 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           G +K+++ +KG+GF+      + G DVF+H  A+  +G+  L  GQ V
Sbjct: 137 GVVKFFSAEKGFGFV---ACDQGGKDVFVHVKALERSGIKTLESGQRV 181


>gi|254481420|ref|ZP_05094665.1| putative 'Cold-shock' DNA-binding domain protein [marine gamma
          proteobacterium HTCC2148]
 gi|214038583|gb|EEB79245.1| putative 'Cold-shock' DNA-binding domain protein [marine gamma
          proteobacterium HTCC2148]
          Length = 70

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFIT E   E   DVF+H  ++   G   L EGQ V +  ++
Sbjct: 7  GTVKWFNNAKGFGFITRE---EEDADVFVHFRSIEGDGYRTLNEGQEVEFSLIE 57


>gi|85001185|ref|XP_955311.1| cold shock protein [Theileria annulata strain Ankara]
 gi|65303457|emb|CAI75835.1| cold shock protein, putative [Theileria annulata]
          Length = 95

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G  KW+N  KGYGFIT     E+G+DVF+H+S + + G  +L E + V  + + ++   K
Sbjct: 6  GVCKWFNNKKGYGFIT----LENGEDVFVHQSEIYADGFRSLHENEKVELEVIMDNNRKK 61


>gi|66046414|ref|YP_236255.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|63257121|gb|AAY38217.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|330972895|gb|EGH72961.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 92

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           G +KW+N  KG+GFI  EG  +S +D+F+H SA+   G   L  GQ V ++
Sbjct: 3  EGKVKWFNNAKGFGFINAEG--KSDEDLFVHFSAIEMDGYKTLKAGQKVRFE 52


>gi|77459814|ref|YP_349321.1| cold-shock DNA-binding protein family protein [Pseudomonas
          fluorescens Pf0-1]
 gi|77383817|gb|ABA75330.1| cold shock-like protein CspD [Pseudomonas fluorescens Pf0-1]
          Length = 93

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 5  GSIKWYNPDKGYGFI---TPEGSTESGD--DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI   + EG  E G   D F H SA+   G   L  GQ+V ++ VQ
Sbjct: 4  GKVKWFNNAKGFGFINTDSREGKDEDGKEIDFFAHYSAIEMDGYKTLKAGQIVKFEIVQ 62


>gi|315633923|ref|ZP_07889212.1| CspA family cold shock transcriptional regulator [Aggregatibacter
          segnis ATCC 33393]
 gi|315477173|gb|EFU67916.1| CspA family cold shock transcriptional regulator [Aggregatibacter
          segnis ATCC 33393]
          Length = 69

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI PE  ++   DVF+H S +       L EG  V ++ VQ+   G 
Sbjct: 6  GTVKWFNSTKGFGFIAPEDGSK---DVFVHFSGIVGNNFRTLNEGDRVAFN-VQDSQRGP 61

Query: 65 YSAE 68
           + +
Sbjct: 62 TAVD 65


>gi|323493244|ref|ZP_08098373.1| cold shock-like protein CspD [Vibrio brasiliensis LMG 20546]
 gi|323312510|gb|EGA65645.1| cold shock-like protein CspD [Vibrio brasiliensis LMG 20546]
          Length = 73

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI PEG  E G DVF H S +   G   L  GQ V ++
Sbjct: 4  GTVKWFNNAKGFGFICPEG--EDG-DVFAHYSTIKMDGYRTLKAGQQVNFE 51


>gi|221234388|ref|YP_002516824.1| cold shock protein CspD [Caulobacter crescentus NA1000]
 gi|220963560|gb|ACL94916.1| cold shock protein cspD [Caulobacter crescentus NA1000]
          Length = 196

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G +KW++  KGYGFI P+   ++G  DV LH +++ + G     EG ++  D V+ 
Sbjct: 20 GKVKWFDAGKGYGFIVPDDPGQTGLKDVLLHVTSLRNCGRETAMEGAIIVCDVVRR 75



 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           +KW+N  KGYGF+  +   E G D+F+H   +   GL +L  G  V   + +
Sbjct: 133 VKWFNRTKGYGFVIRD--AEPG-DIFVHIETLRRGGLEDLQPGDDVLVRFAR 181


>gi|240850648|ref|YP_002972048.1| cold shock protein [Bartonella grahamii as4aup]
 gi|240267771|gb|ACS51359.1| cold shock protein [Bartonella grahamii as4aup]
          Length = 191

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N DKGYGF++    TE   D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 117 LERAIVKWFNRDKGYGFLSRGQGTE---DIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMTAE 179



 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          G IKW++  KGYGFI P+       D+ LH + +   G     EG  V
Sbjct: 28 GVIKWFDGSKGYGFIVPD--LPHFPDILLHVTVMRRDGFQTALEGAKV 73


>gi|146277100|ref|YP_001167259.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|145555341|gb|ABP69954.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17025]
          Length = 180

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +VH G +KW++P KG+GFI  E   E+G D+ LH + + + G  ++ +G  +T   VQ+ 
Sbjct: 10 LVH-GRVKWFDPAKGFGFIVTE---ENGADILLHANVLRNYGQSSVADGAGITVK-VQST 64

Query: 61 ANGKYSAENLKLVPKS 76
            G  + E +++ P +
Sbjct: 65 QRGVQAVEVVEIEPPA 80



 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G +KW++  KG+GF    G +E   DVF+H   +  +G  +L  G+ V    ++
Sbjct: 106 GRVKWFDKGKGFGFANVFGRSE---DVFIHVEVLRMSGFADLAAGEAVALRIIE 156


>gi|24658520|ref|NP_647983.1| lin-28 [Drosophila melanogaster]
 gi|75027386|sp|Q9VRN5|LIN28_DROME RecName: Full=Protein lin-28 homolog
 gi|21842295|gb|AAM77748.1|AF521096_1 RNA-binding protein LIN-28 [Drosophila melanogaster]
 gi|21392070|gb|AAM48389.1| RE05342p [Drosophila melanogaster]
 gi|23094110|gb|AAF50758.2| lin-28 [Drosophila melanogaster]
 gi|220947728|gb|ACL86407.1| lin-28-PA [synthetic construct]
 gi|220957108|gb|ACL91097.1| lin-28-PA [synthetic construct]
          Length = 195

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           V  G  KW+N  KG+GF+TP    + G +VF+H+S +  +G  +L E + V ++
Sbjct: 37 CVRLGKCKWFNVAKGWGFLTP---NDGGQEVFVHQSVIQMSGFRSLGEQEEVEFE 88


>gi|126735666|ref|ZP_01751411.1| cold shock DNA-binding domain protein [Roseobacter sp. CCS2]
 gi|126714853|gb|EBA11719.1| cold shock DNA-binding domain protein [Roseobacter sp. CCS2]
          Length = 190

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GF+  E   E G D+ LH + + + G  ++ +G  ++   VQ+   G 
Sbjct: 29 GQVKWFDPTKGFGFVVSE---EGGPDILLHANVLRNYGQGSVVDGSAISI-MVQDTQRGL 84

Query: 65 YSAENLKLVPKSSN 78
           + E L + P  + 
Sbjct: 85 QATEVLSITPPETE 98



 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +    +KW++  KG+GF    G+ E   DVF+H   +  +GL +L  G+ +    V  + 
Sbjct: 119 IEPARVKWFDKAKGFGFANVFGNNE---DVFVHVEVLRRSGLSDLQSGEAIGIRMVDGE- 174

Query: 62  NGKYSAE 68
            G+ + E
Sbjct: 175 RGRMAIE 181


>gi|307720566|ref|YP_003891706.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica
          DSM 16294]
 gi|306978659|gb|ADN08694.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica
          DSM 16294]
          Length = 72

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS--AGLFNLTEGQLVTYD 55
          +  GS+KW+N +KGYGFI  +     G DVF+H   V +   G  +L EGQ VT++
Sbjct: 4  LQDGSVKWFNDEKGYGFIQQD---NGGKDVFVHFRQVNNNGGGRVSLAEGQRVTFE 56


>gi|120611988|ref|YP_971666.1| cold-shock DNA-binding protein family protein [Acidovorax
          citrulli AAC00-1]
 gi|120590452|gb|ABM33892.1| cold-shock DNA-binding protein family [Acidovorax citrulli
          AAC00-1]
          Length = 70

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI P+   + G D+F H   +   G   L E Q V ++  Q  A G 
Sbjct: 6  GIVKWFNEGKGFGFIAPD---DGGKDLFAHFREIQGGGFKTLAENQHVQFEVTQG-AKGP 61

Query: 65 YSAENLKLV 73
            A N+++V
Sbjct: 62 -QASNIRVV 69


>gi|323493049|ref|ZP_08098183.1| cold shock protein CspE [Vibrio brasiliensis LMG 20546]
 gi|323312697|gb|EGA65827.1| cold shock protein CspE [Vibrio brasiliensis LMG 20546]
          Length = 50

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 4/46 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
          G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ
Sbjct: 7  GTVKWFNETKGFGFI----QQENGPDVFAHFSAITGDGFRTLVEGQ 48


>gi|302185011|ref|ZP_07261684.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae 642]
          Length = 92

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 10/77 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI  EG  +S +D+F+H SA+   G   L  GQ V ++     A+G
Sbjct: 3  EGKVKWFNNAKGFGFINAEG--KSDEDLFVHFSAIEMDGYKTLKAGQKVRFEV----AHG 56

Query: 64 KYSAENLKL----VPKS 76
              + +K+    VPK 
Sbjct: 57 PKGLQAIKINGSDVPKQ 73


>gi|290473959|ref|YP_003466833.1| DNA replication inhibitor, nucleic acid-binding domain
          [Xenorhabdus bovienii SS-2004]
 gi|289173266|emb|CBJ80041.1| DNA replication inhibitor, nucleic acid-binding domain
          [Xenorhabdus bovienii SS-2004]
          Length = 76

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI P      GDD+F H S +   G   L  GQ V +   Q
Sbjct: 4  GTVKWFNNAKGFGFICP---ASGGDDIFAHYSTIQMDGYRTLKAGQKVNFSIHQ 54


>gi|262274512|ref|ZP_06052323.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
 gi|262221075|gb|EEY72389.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
          Length = 73

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI P+   E   D+F H S +   G   L  GQ V Y+ VQ    G 
Sbjct: 4  GTVKWFNNAKGFGFICPD---EGEGDIFAHYSTIQMDGYRTLKAGQTVNYE-VQEGPKGY 59

Query: 65 YSAENLKLVP 74
          ++++   +VP
Sbjct: 60 HASQ---IVP 66


>gi|238753510|ref|ZP_04614873.1| Cold shock-like protein [Yersinia ruckeri ATCC 29473]
 gi|238708463|gb|EEQ00818.1| Cold shock-like protein [Yersinia ruckeri ATCC 29473]
          Length = 69

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          M+  G +KW+N  KGYGFI+P    + G DV++ ++A+A+    +L+EGQ V +
Sbjct: 2  MLKMGRVKWFNQLKGYGFISP---LDGGLDVYVSKTAIANTKNKSLSEGQNVEF 52


>gi|301381401|ref|ZP_07229819.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          Max13]
 gi|302058399|ref|ZP_07249940.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          K40]
 gi|302130352|ref|ZP_07256342.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          NCPPB 1108]
          Length = 91

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  +  +D+F H SA+   G   L  GQ V ++ +Q
Sbjct: 6  GKVKWFNNAKGYGFILEDG--KPNEDLFAHYSAIQMDGYKTLKAGQSVRFEIIQ 57


>gi|85058123|ref|YP_453825.1| major cold shock protein [Sodalis glossinidius str. 'morsitans']
 gi|84778643|dbj|BAE73420.1| major cold shock protein [Sodalis glossinidius str. 'morsitans']
          Length = 70

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +   Q
Sbjct: 7  GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQRVEFTIEQ 57


>gi|206895854|ref|YP_002247469.1| hypothetical protein COPRO5265_1161 [Coprothermobacter
          proteolyticus DSM 5265]
 gi|206738471|gb|ACI17549.1| conserved domain protein [Coprothermobacter proteolyticus DSM
          5265]
          Length = 89

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW++  KGYGFIT +   +   DVF+H SA+   G  +L +G  V ++ V    
Sbjct: 23 MYTGTVKWFDAKKGYGFITRD---DGEGDVFVHFSAIEGNGFKSLDQGDKVEFEIV---- 75

Query: 62 NGKYSAENLKLVPK 75
          NG    +  K+V K
Sbjct: 76 NGPKGPQAAKVVKK 89


>gi|288961931|ref|YP_003452241.1| cold-shock DNA-binding domain protein [Azospirillum sp. B510]
 gi|288914211|dbj|BAI75697.1| cold-shock DNA-binding domain protein [Azospirillum sp. B510]
          Length = 204

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 5  GSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           ++KW+ P+KG+GF+   +GS E+    FLH S +A+A L N  EG  V  D  Q
Sbjct: 11 ATVKWFKPEKGFGFVRLADGSGEA----FLHASVLAAASLPNPVEGTTVVCDLAQ 61



 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G+++WYN D   G I P    E G  V+  R+ +  +GL  + +G+ V Y
Sbjct: 141 GTVRWYNLDSQSGLIEP---WEDGATVYFDRATLRQSGLDIVADGEDVRY 187


>gi|237785049|ref|YP_002905754.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757961|gb|ACR17211.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
          Length = 130

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++PDKG+GF+T  G     DDVF+  + V   G+  L +GQ + Y++    A G+
Sbjct: 4  GRVKWFDPDKGFGFVTNPGD----DDVFVG-TQVLPDGVEELHQGQKIEYEF----AAGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 KGPQVLRI 62


>gi|254459315|ref|ZP_05072736.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales
          bacterium GD 1]
 gi|207083928|gb|EDZ61219.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales
          bacterium GD 1]
          Length = 72

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTEGQLVTYD 55
          G++KW+N +KG+GFI  E     G DVF+H   V S G    +L EGQ VT++
Sbjct: 7  GTVKWFNSEKGFGFIEQE---NGGKDVFVHFRQVNSNGYDRVSLNEGQKVTFE 56


>gi|268315810|ref|YP_003289529.1| cold-shock DNA-binding domain-containing protein [Rhodothermus
          marinus DSM 4252]
 gi|262333344|gb|ACY47141.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM
          4252]
          Length = 95

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 6/54 (11%)

Query: 4  RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYD 55
          RG +KW++  KGYGFI  PEG    G D+F+H S + S   F  L  GQ+V ++
Sbjct: 5  RGVVKWFDAKKGYGFIIHPEG----GADIFVHYSQIISERRFKTLRTGQIVEFE 54


>gi|315605470|ref|ZP_07880508.1| cold shock protein [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312816|gb|EFU60895.1| cold shock protein [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 69

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRS-AVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFITP+   +   DVF+H S  V  +G   L EG+ V Y+ ++
Sbjct: 4  GTVKWFNDAKGFGFITPD---DRSVDVFVHYSNIVGQSGRRTLMEGERVEYEAIE 55


>gi|29377403|ref|NP_816557.1| cold-shock domain-contain protein [Enterococcus faecalis V583]
 gi|29344870|gb|AAO82627.1| cold-shock domain family protein [Enterococcus faecalis V583]
          Length = 67

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K +N  +GYGFI  E     G ++F+H++ +   G   L EGQ V Y+  + +  G+
Sbjct: 4  GTVKSFNHKRGYGFIIAE----DGSEIFVHQTGICMPGFRKLLEGQAVEYETAEYE--GR 57

Query: 65 YSAENLKLV 73
            A N+ ++
Sbjct: 58 TKAVNVTVI 66


>gi|118616153|ref|YP_904485.1| cold shock-like protein B CspB [Mycobacterium ulcerans Agy99]
 gi|118568263|gb|ABL03014.1| cold shock-like protein B CspB [Mycobacterium ulcerans Agy99]
          Length = 184

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V  G +KWY+ DKG+GF+    S E G+DV++ RS+   AG+  L  GQ V +      A
Sbjct: 51  VPTGKVKWYDSDKGFGFL----SQEEGEDVYV-RSSALPAGVEGLKAGQRVEFGI----A 101

Query: 62  NGKYSAENLKL 72
           +G+   + L L
Sbjct: 102 SGRRGPQALSL 112


>gi|52425150|ref|YP_088287.1| CspC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307202|gb|AAU37702.1| CspC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 69

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI  EGS     D+F H S +   G  +L  GQ V ++ V     G+
Sbjct: 4  GVVKWFNNAKGFGFINAEGSDA---DIFAHYSVIEMDGYRSLKAGQKVNFEVVH----GE 56

Query: 65 YSAENLKLVP 74
            +   K++P
Sbjct: 57 KGSHATKIIP 66


>gi|213970046|ref|ZP_03398178.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          T1]
 gi|213925150|gb|EEB58713.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          T1]
          Length = 89

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KGYGFI  +G  +  +D+F H SA+   G   L  GQ V ++ +Q
Sbjct: 4  GKVKWFNNAKGYGFILEDG--KPNEDLFAHYSAIQMDGYKTLKAGQSVRFEIIQ 55


>gi|258654840|ref|YP_003203996.1| cold-shock DNA-binding domain-containing protein [Nakamurella
          multipartita DSM 44233]
 gi|258558065|gb|ACV81007.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
          DSM 44233]
          Length = 129

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 8/68 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKWY+ DKG+GFI  +G    GDDV + RS+   AG+  L  GQ V +      A+G+
Sbjct: 4  GKIKWYDADKGFGFIAQDG---GGDDVHV-RSSALPAGVATLKPGQKVEFGV----ADGR 55

Query: 65 YSAENLKL 72
             + L++
Sbjct: 56 RGPQALQV 63


>gi|206579907|ref|YP_002240730.1| 'cold-shock' DNA-binding domain protein [Klebsiella pneumoniae
          342]
 gi|206568965|gb|ACI10741.1| 'cold-shock' DNA-binding domain protein [Klebsiella pneumoniae
          342]
          Length = 72

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI+P    +   D+F+H SA+       L EGQ V +   + D    
Sbjct: 7  GLVKWFNEDKGFGFISP---LDGSKDIFVHLSALNGDNFKTLFEGQKVEFAIHRGDKGP- 62

Query: 65 YSAENLKLVPK 75
           +A N+ L  K
Sbjct: 63 -AAANVTLCDK 72


>gi|77918392|ref|YP_356207.1| cold shock proteins [Pelobacter carbinolicus DSM 2380]
 gi|77544475|gb|ABA88037.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
          DSM 2380]
          Length = 66

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI      ++G DVF+H S +   G  +L EG  V ++  Q
Sbjct: 4  GTVKWFNDAKGFGFI----EQDNGPDVFVHFSEIQGEGFKSLAEGDRVVFEVTQ 53


>gi|296394697|ref|YP_003659581.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rotundus DSM 44985]
 gi|296181844|gb|ADG98750.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
          44985]
          Length = 68

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYD 55
          G++KW+N +KG+GFI PE  ++   D+F+H + +   G F  L EGQ V ++
Sbjct: 4  GTVKWFNEEKGFGFIAPEDGSK---DLFVHFTGIVENGGFRTLHEGQRVQFE 52


>gi|170022693|ref|YP_001719198.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|169749227|gb|ACA66745.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
          Length = 70

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 AAVNVIAL 70


>gi|170585110|ref|XP_001897330.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
          malayi]
 gi|158595278|gb|EDP33845.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
          malayi]
          Length = 205

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 28/37 (75%), Gaps = 3/37 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37
          ++  G+ KW+N  KGYGFITP+   E GDDVF+H+++
Sbjct: 7  VIQVGTCKWFNVLKGYGFITPD---EGGDDVFVHQAS 40


>gi|91226275|ref|ZP_01261115.1| cold-shock DNA-binding domain protein [Vibrio alginolyticus
          12G01]
 gi|91189286|gb|EAS75565.1| cold-shock DNA-binding domain protein [Vibrio alginolyticus
          12G01]
          Length = 69

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI    S ++GDD+F+H  ++   G   L EG  V++
Sbjct: 7  GTVKWFNETKGFGFI----SQQNGDDLFVHFRSILGDGFKKLVEGDKVSF 52


>gi|289828079|ref|ZP_06546191.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-3139]
          Length = 45

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 3/43 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
          +G++KW+N  KG+GFITPE  ++   DVF+H SA+ + G   L
Sbjct: 5  KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAIQTNGFKTL 44


>gi|163751227|ref|ZP_02158455.1| stress response protein CspD [Shewanella benthica KT99]
 gi|294140596|ref|YP_003556574.1| stress response protein CspD [Shewanella violacea DSS12]
 gi|161328941|gb|EDQ00015.1| stress response protein CspD [Shewanella benthica KT99]
 gi|293327065|dbj|BAJ01796.1| stress response protein CspD [Shewanella violacea DSS12]
          Length = 68

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI P+     G+DVF H S +   G   L  GQ V ++
Sbjct: 4  GTVKWFNNAKGFGFICPDA---GGEDVFAHYSTIEMEGYRTLKAGQPVQFE 51


>gi|295705597|ref|YP_003598672.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294803256|gb|ADF40322.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 70

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          H+G++K +N  KG GFITP+  ++   +VF H +A+      NL+EGQ V ++
Sbjct: 4  HKGTVKSFNESKGSGFITPKNGSK---EVFFHSNAIDREEYKNLSEGQKVEFE 53


>gi|283768673|ref|ZP_06341585.1| cold-shock DNA-binding domain protein [Bulleidia extructa W1219]
 gi|283105065|gb|EFC06437.1| cold-shock DNA-binding domain protein [Bulleidia extructa W1219]
          Length = 70

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 7/71 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYDYVQNDA 61
          G +KW++  KGYGFIT   S + G D+F+H SA+      G   L EGQ V ++ V+   
Sbjct: 4  GKVKWFDDQKGYGFIT---SDDEGKDIFVHFSAIKEGDENGHKTLKEGQAVQFE-VEEGE 59

Query: 62 NGKYSAENLKL 72
           G +++   KL
Sbjct: 60 KGPHASNVEKL 70


>gi|307136096|gb|ADN33944.1| cold-shock DNA-binding family protein [Cucumis melo subsp. melo]
          Length = 272

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G ++W+N  KG+GFI P+     G D+F+H+S++ S G  +L  G  V +     D    
Sbjct: 8  GVVQWFNDSKGFGFIKPD---VEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64

Query: 65 YSAENLKLVPKSSN 78
           + E + L   S N
Sbjct: 65 KAIEVVALDGSSGN 78


>gi|50955362|ref|YP_062650.1| cold-shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951844|gb|AAT89545.1| cold-shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 72

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 7/56 (12%)

Query: 7  IKWYNPDKGYGFITPEGSTESGD-------DVFLHRSAVASAGLFNLTEGQLVTYD 55
          +KW+N +KGYGFIT + + + G+       DVF+H SA+   G   L EGQ V ++
Sbjct: 1  MKWFNAEKGYGFITVDSNVDGGEQNVTVHQDVFVHYSAIDMNGYKVLEEGQQVEFE 56


>gi|41406908|ref|NP_959744.1| CspB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395258|gb|AAS03127.1| CspB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 138

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ DKG+GF+    S E G+DV++ RS+   AG+  L  GQ V +      A
Sbjct: 4  VPTGKVKWYDADKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGI----A 54

Query: 62 NGKYSAENLKL 72
          +G+   + L L
Sbjct: 55 SGRRGPQALSL 65


>gi|152967523|ref|YP_001363307.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
          SRS30216]
 gi|151362040|gb|ABS05043.1| putative cold-shock DNA-binding domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 152

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 5/57 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          V  G +KW++ DKG+GF+    + E G +VF+H SA+  AG   L++G  V +  VQ
Sbjct: 24 VPTGKVKWFDADKGFGFL----AAEDGAEVFVHASAL-PAGTTTLSKGSRVEFGVVQ 75


>gi|51597876|ref|YP_072067.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP
          32953]
 gi|51597877|ref|YP_072068.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP
          32953]
 gi|153949918|ref|YP_001399369.1| cold shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|170022694|ref|YP_001719199.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186897072|ref|YP_001874184.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|186897073|ref|YP_001874185.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|51591158|emb|CAH22823.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP
          32953]
 gi|51591159|emb|CAH22824.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP
          32953]
 gi|152961413|gb|ABS48874.1| cold shock DNA-binding domain protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|169749228|gb|ACA66746.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186700098|gb|ACC90727.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|186700099|gb|ACC90728.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
          Length = 70

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +  ++N A G 
Sbjct: 7  GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 62

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 63 SAVNVIAL 70


>gi|325283100|ref|YP_004255641.1| cold-shock DNA-binding domain-containing protein [Deinococcus
          proteolyticus MRP]
 gi|324314909|gb|ADY26024.1| cold-shock DNA-binding domain protein [Deinococcus proteolyticus
          MRP]
          Length = 80

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++ +KGYGFI   G+     DVF+H SA+ S G   L EG  V ++      + 
Sbjct: 3  QGRVKWFSVEKGYGFIEHPGNP----DVFVHYSAIQSGGFRKLNEGDEVEFEVGDGQGDR 58

Query: 64 KYSAENL 70
             A+N+
Sbjct: 59 GPQAKNV 65


>gi|317405219|gb|EFV85558.1| cold shock-like protein cspA [Achromobacter xylosoxidans C54]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +K +N +KGYGFITPE     G D+F H S +  +G  +L E Q V++
Sbjct: 1  METGVVKGFNSEKGYGFITPEA---GGKDLFAHFSEIQGSGFKSLEENQRVSF 50


>gi|323698523|ref|ZP_08110435.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. ND132]
 gi|323458455|gb|EGB14320.1| cold-shock DNA-binding domain protein [Desulfovibrio
          desulfuricans ND132]
          Length = 76

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M H G + W+N  KG+GFIT     + G DVF+H + +   G   L  G+ VT+     +
Sbjct: 1  MRHTGEVTWFNEQKGFGFITG----DDGRDVFVHYTEIVRDGFQTLEPGEKVTFTLADEE 56

Query: 61 ANGK 64
             K
Sbjct: 57 TGPK 60


>gi|167626580|ref|YP_001677080.1| cold-shock DNA-binding domain-containing protein [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
 gi|241667137|ref|ZP_04754715.1| cold-shock DNA-binding domain-containing protein [Francisella
          philomiragia subsp. philomiragia ATCC 25015]
 gi|254875691|ref|ZP_05248401.1| cold shock protein [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
 gi|167596581|gb|ABZ86579.1| putative cold-shock DNA-binding domain protein [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
 gi|254841712|gb|EET20126.1| cold shock protein [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 6/52 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++K++N  KG+GFITPE     G DVF+H S +       L EGQ VT++
Sbjct: 6  QGTVKFFNDQKGFGFITPE---NGGKDVFVHISKLNGE---TLAEGQQVTFE 51


>gi|288962305|ref|YP_003452600.1| cold shock protein [Azospirillum sp. B510]
 gi|288914571|dbj|BAI76056.1| cold shock protein [Azospirillum sp. B510]
          Length = 203

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          R ++KW+N  KG+GF+TP+   +   D FLH + +   G  +L EG  +T D
Sbjct: 21 RATVKWFNATKGFGFVTPD---DGSPDAFLHSTVLQFCGHDSLPEGATITCD 69



 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KW+N  KG+GFI P   +  G D+F+H  A+  +G+  L +G  V     Q
Sbjct: 140 GTVKWFNVSKGFGFIAP---STGGKDIFVHIRALERSGISGLDDGAQVRVTIRQ 190


>gi|257791070|ref|YP_003181676.1| cold-shock DNA-binding domain-containing protein [Eggerthella
          lenta DSM 2243]
 gi|317488206|ref|ZP_07946777.1| cold-shock' DNA-binding domain-containing protein [Eggerthella
          sp. 1_3_56FAA]
 gi|325830873|ref|ZP_08164257.1| cold shock protein CspD [Eggerthella sp. HGA1]
 gi|257474967|gb|ACV55287.1| cold-shock DNA-binding domain protein [Eggerthella lenta DSM
          2243]
 gi|316912711|gb|EFV34249.1| cold-shock' DNA-binding domain-containing protein [Eggerthella
          sp. 1_3_56FAA]
 gi|325487280|gb|EGC89723.1| cold shock protein CspD [Eggerthella sp. HGA1]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW++ +KGYGFI    S E+G+D+F+H S +   G  +L E   V +  + + +
Sbjct: 1  MSQGTVKWFSSEKGYGFI----SQENGEDLFVHFSEIQGDGYKSLDENAKVEF-VIASGS 55

Query: 62 NGKYSAENLKLV 73
          NGK  A  + ++
Sbjct: 56 NGKSQATQVCVL 67


>gi|182624210|ref|ZP_02951996.1| cold shock protein [Clostridium perfringens D str. JGS1721]
 gi|177910624|gb|EDT72992.1| cold shock protein [Clostridium perfringens D str. JGS1721]
          Length = 69

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 5/52 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYD 55
          G +KW+N +K YGFI    S + GDDVF+H S V   G   +L EG+ V++D
Sbjct: 6  GIVKWFNQEKCYGFI----SCDEGDDVFVHISQVKEKGPEKDLHEGESVSFD 53


>gi|123444001|ref|YP_001007971.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|123444002|ref|YP_001007972.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122090962|emb|CAL13844.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122090963|emb|CAL13845.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
          Length = 70

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +  +++ A G
Sbjct: 7  GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IESGAKG 61


>gi|159039857|ref|YP_001539110.1| cold-shock DNA-binding domain-containing protein [Salinispora
          arenicola CNS-205]
 gi|157918692|gb|ABW00120.1| cold-shock DNA-binding domain protein [Salinispora arenicola
          CNS-205]
          Length = 128

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+  KGYGF+T    ++ G DVFL ++A+  AG+ +L  GQ V +  V +    +
Sbjct: 4  GRVKWYDATKGYGFVT----SDEGGDVFLPKAAL-PAGVTDLKGGQRVDFSVVDSRRGAQ 58

Query: 65 YSAENLKLVPKS 76
               L   P S
Sbjct: 59 AMGVKLLEAPPS 70


>gi|269121609|ref|YP_003309786.1| cold-shock DNA-binding domain protein [Sebaldella termitidis ATCC
          33386]
 gi|268615487|gb|ACZ09855.1| cold-shock DNA-binding domain protein [Sebaldella termitidis ATCC
          33386]
          Length = 65

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G +KW+N  KG+GFI    S E G+D FLH S +   G  ++ EG+ V ++
Sbjct: 2  QGKVKWFNDKKGFGFI----SGEDGNDYFLHFSKIEKDGFKSVNEGEEVIFE 49


>gi|254421024|ref|ZP_05034748.1| 'Cold-shock' DNA-binding domain protein [Brevundimonas sp. BAL3]
 gi|196187201|gb|EDX82177.1| 'Cold-shock' DNA-binding domain protein [Brevundimonas sp. BAL3]
          Length = 174

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G +KW++P KGYGFI P+  T +   DV LH S++   G     EG  +  D V+ 
Sbjct: 11 GRVKWFDPAKGYGFIVPDDPTLTELRDVLLHISSLRDTGRETADEGAPIVCDCVRR 66



 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           +KW+N  KGYGF+  +   E G D+F+H   +   GL +L  G  V   +
Sbjct: 112 VKWFNRTKGYGFVVRD--REPG-DIFVHIETLRRCGLDDLVPGDTVQVRF 158


>gi|293603888|ref|ZP_06686303.1| cold shock protein CspA [Achromobacter piechaudii ATCC 43553]
 gi|311104610|ref|YP_003977463.1| cold-shock DNA-binding domain-containing protein 1 [Achromobacter
          xylosoxidans A8]
 gi|292817725|gb|EFF76791.1| cold shock protein CspA [Achromobacter piechaudii ATCC 43553]
 gi|310759299|gb|ADP14748.1| cold-shock DNA-binding domain protein 1 [Achromobacter
          xylosoxidans A8]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI PE     G D+F H S + S G   L E Q V+Y   Q  A G 
Sbjct: 4  GIVKWFNDAKGFGFIMPE---NGGKDLFAHFSEIVSDGHKVLVENQRVSYVTAQG-AKGP 59

Query: 65 YSAE 68
          ++ +
Sbjct: 60 HATQ 63


>gi|238897472|ref|YP_002923149.1| RNA chaperone, transcription antiterminator [Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465227|gb|ACQ67001.1| RNA chaperone, transcription antiterminator [Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 69

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          + +G +KW++   GYGFI+PE   + G D+++H++A+A+    +L  GQ V + Y
Sbjct: 3  LKKGKVKWFDKIAGYGFISPE---DGGLDIYVHKAAIANIKDKSLIAGQDVEFSY 54


>gi|328545337|ref|YP_004305446.1| Cold-shock DNA-binding domain protein [polymorphum gilvum
          SL003B-26A1]
 gi|326415079|gb|ADZ72142.1| Cold-shock DNA-binding domain protein [Polymorphum gilvum
          SL003B-26A1]
          Length = 66

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  +G G I P      GDDV +   ++  +G+ +L EGQLV +D       G+
Sbjct: 4  GNVKWFDSRRGIGAIEPH----EGDDVIVELDSLRRSGIESLKEGQLVAFDMAWR--AGR 57

Query: 65 YSAENLKLV 73
            AE++K++
Sbjct: 58 SLAEDVKVL 66


>gi|254473739|ref|ZP_05087134.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio
          sp. JE062]
 gi|211957125|gb|EEA92330.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio
          sp. JE062]
          Length = 70

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 6/65 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G++K++N DKGYGFITP +GS     D+F+H +A   +G+    EG  +T+   + 
Sbjct: 1  MRQDGTLKFFNHDKGYGFITPGDGSK----DIFVHITAFERSGIAVPAEGAAITF-VAEE 55

Query: 60 DANGK 64
          D  G+
Sbjct: 56 DRRGR 60


>gi|167837494|ref|ZP_02464377.1| cold-shock domain family protein [Burkholderia thailandensis
          MSMB43]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V+++ V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIKMEGFKTLKENQRVSFE-VKTGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|295689096|ref|YP_003592789.1| cold-shock DNA-binding domain-containing protein [Caulobacter
          segnis ATCC 21756]
 gi|295430999|gb|ADG10171.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC
          21756]
          Length = 197

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G +KW++  KGYGFI P+   ++G  DV LH +++ + G     EG ++  D V+ 
Sbjct: 20 GRVKWFDAGKGYGFIIPDDPGQTGLKDVLLHVTSLRNCGRETAMEGAVIVCDVVRR 75



 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
            R  +KW+N  KGYGF+  +   E G D+F+H   +   GL +L  G  V   + +
Sbjct: 130 ERAKVKWFNRTKGYGFVVRD--AEPG-DIFVHIETLRRGGLEDLQPGDDVLVRFAR 182


>gi|78065585|ref|YP_368354.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
          383]
 gi|77966330|gb|ABB07710.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V++D V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIKMDGFKTLKENQRVSFD-VKVGPKGK 59

Query: 65 YSAENLKLV 73
           +A N++ V
Sbjct: 60 QAA-NIQAV 67


>gi|254461278|ref|ZP_05074694.1| cold shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2083]
 gi|206677867|gb|EDZ42354.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium
          HTCC2083]
          Length = 173

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW++P KG+GF+  E   E G D+ LH + + + G  ++ EG ++     + D  G
Sbjct: 11 RGAVKWFDPAKGFGFVVAE---EGGADILLHANVLRNFGQNSVAEGAVIEILSQETD-RG 66

Query: 64 KYSAENLKLVP 74
            + E L + P
Sbjct: 67 LQAVEVLSIDP 77


>gi|158522029|ref|YP_001529899.1| cold-shock DNA-binding domain-containing protein [Desulfococcus
          oleovorans Hxd3]
 gi|158510855|gb|ABW67822.1| cold-shock DNA-binding domain protein [Desulfococcus oleovorans
          Hxd3]
          Length = 66

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KG+GFI      +  +DVF+H SA+   G   L+EG  V+++    D
Sbjct: 4  GIVKWFNEKKGFGFI----EVDESNDVFVHYSAITMPGFKTLSEGDRVSFEIEDTD 55


>gi|313901260|ref|ZP_07834747.1| cold shock protein CspB [Clostridium sp. HGF2]
 gi|312953868|gb|EFR35549.1| cold shock protein CspB [Clostridium sp. HGF2]
          Length = 65

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +K +N +KGYGFIT     E G DVF H S +   G   +     V +D V+ D
Sbjct: 2  RGKVKMFNQEKGYGFIT----LEDGKDVFFHYSQLMMEGFKTIDADAEVEFDLVETD 54


>gi|296169637|ref|ZP_06851255.1| cold-shock domain family protein [Mycobacterium parascrofulaceum
          ATCC BAA-614]
 gi|295895634|gb|EFG75330.1| cold-shock domain family protein [Mycobacterium parascrofulaceum
          ATCC BAA-614]
          Length = 137

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ DKG+GF+    S E G+DV++ RS+   AG+  L  GQ V +      A+G+
Sbjct: 4  GKVKWYDADKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGI----ASGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|89093876|ref|ZP_01166821.1| cold-shock domain family protein [Oceanospirillum sp. MED92]
 gi|89081762|gb|EAR60989.1| cold-shock domain family protein [Oceanospirillum sp. MED92]
          Length = 149

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            +G++KW+N  KG+GFIT        DDVF+H   +   G  +L EGQ V + YV+    
Sbjct: 83  EQGTVKWFNVSKGFGFITR----GEDDDVFVHFRNIRGRGHRSLAEGQKVRF-YVRESDK 137

Query: 63  GKYSAENLKLV 73
           G   AE++ +V
Sbjct: 138 G-LQAEDVSVV 147


>gi|260577276|ref|ZP_05845250.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
 gi|259020520|gb|EEW23842.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
          Length = 177

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GFI    + E G D+ LH + + + G  ++ +G  ++ + VQ    G+
Sbjct: 13 GHVKWFDPTKGFGFIV---ADEGGPDILLHANVLRNYGQSSVADGTAISVN-VQATQRGR 68

Query: 65 YSAENLKLVP 74
           + E L++ P
Sbjct: 69 QAVEVLEIEP 78


>gi|238764623|ref|ZP_04625569.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
 gi|238697213|gb|EEP89984.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
          Length = 57

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +
Sbjct: 7  GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEF 53


>gi|227549696|ref|ZP_03979745.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078192|gb|EEI16155.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N +KG+GFI P+  +    DVF+H S +   G   L E Q V ++
Sbjct: 4  GTVKWFNAEKGFGFIAPDDGSA---DVFVHYSEIQGNGFRTLEENQQVEFE 51


>gi|209965446|ref|YP_002298361.1| Cold shock-like protein CspG [Rhodospirillum centenum SW]
 gi|209958912|gb|ACI99548.1| Cold shock-like protein CspG [Rhodospirillum centenum SW]
          Length = 101

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          G++K+++ DKG+GF+TP+G    G DVF+H +A+  +G+  L   Q V
Sbjct: 38 GTVKFFSSDKGFGFVTPDG---GGKDVFVHVTALERSGVRTLMPEQRV 82


>gi|167586483|ref|ZP_02378871.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V++D V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIKMDGFKTLKENQRVSFD-VKVGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|118466199|ref|YP_880259.1| cold shock DNA-binding domain-containing protein [Mycobacterium
          avium 104]
 gi|254773885|ref|ZP_05215401.1| CspB [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118167486|gb|ABK68383.1| 'Cold-shock' DNA-binding domain [Mycobacterium avium 104]
          Length = 135

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ DKG+GF+    S E G+DV++ RS+   AG+  L  GQ V +      A+G+
Sbjct: 4  GKVKWYDADKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGI----ASGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|296276802|ref|ZP_06859309.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus MR1]
          Length = 55

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          +KG+GFI      E G DVF+H SA+A  G  +L EGQ V +D V+ D  G+ +A  +K+
Sbjct: 1  EKGFGFI----EREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGD-RGEQAANVVKM 55


>gi|56697005|ref|YP_167367.1| cold shock DNA-binding domain-containing protein [Ruegeria
          pomeroyi DSS-3]
 gi|56678742|gb|AAV95408.1| cold shock DNA-binding domain protein [Ruegeria pomeroyi DSS-3]
          Length = 175

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++P KGYGF+  E   E G D+ LH + + + G  ++ +G  +     + D  G
Sbjct: 12 RGRVKWFDPTKGYGFVVAE---EGGPDILLHVNVLRNFGQSSVADGAAIEIMTHRTD-RG 67

Query: 64 KYSAENLKLVP 74
            + E + +VP
Sbjct: 68 VQAVEVVSIVP 78



 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    GS+E   DVFLH   +  +GL +L  G+ +    + +   G+ +
Sbjct: 108 VKWFDKGKGFGFANVFGSSE---DVFLHIEVLRQSGLSDLQPGEALAMRVI-DGKRGRMA 163

Query: 67  AENL 70
           AE L
Sbjct: 164 AEVL 167


>gi|107022084|ref|YP_620411.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia AU 1054]
 gi|116689028|ref|YP_834651.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia HI2424]
 gi|170732317|ref|YP_001764264.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|206561351|ref|YP_002232116.1| cold shock-like protein [Burkholderia cenocepacia J2315]
 gi|254246036|ref|ZP_04939357.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
 gi|105892273|gb|ABF75438.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          AU 1054]
 gi|116647117|gb|ABK07758.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          HI2424]
 gi|124870812|gb|EAY62528.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
 gi|169815559|gb|ACA90142.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          MC0-3]
 gi|198037393|emb|CAR53328.1| cold shock-like protein [Burkholderia cenocepacia J2315]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V++D V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGPKGK 59

Query: 65 YSAENLKLV 73
           +A N++ V
Sbjct: 60 QAA-NIQAV 67


>gi|226308783|ref|YP_002768743.1| cold shock protein [Rhodococcus erythropolis PR4]
 gi|229488570|ref|ZP_04382436.1| putative cold-shock DNA-binding domain protein [Rhodococcus
          erythropolis SK121]
 gi|226187900|dbj|BAH36004.1| probable cold shock protein [Rhodococcus erythropolis PR4]
 gi|229324074|gb|EEN89829.1| putative cold-shock DNA-binding domain protein [Rhodococcus
          erythropolis SK121]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +KW+N +KG+GFI P+  T    DVF+H S ++  G  +L E Q V ++  Q
Sbjct: 3  QGIVKWFNGEKGFGFIAPDDGTP---DVFVHYSEISGNGYKSLDENQRVEFEVGQ 54


>gi|159476838|ref|XP_001696518.1| nucleic acid binding protein [Chlamydomonas reinhardtii]
 gi|30527347|gb|AAN77901.2| putative nucleic acid binding protein [Chlamydomonas reinhardtii]
 gi|158282743|gb|EDP08495.1| nucleic acid binding protein [Chlamydomonas reinhardtii]
          Length = 247

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 3/44 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
           +G++KW+N  KG+GFITP G    G+D+F+H++ + S G  +L
Sbjct: 7  QQGTVKWFNATKGFGFITPGG---GGEDLFVHQTNINSEGFRSL 47


>gi|301066334|ref|YP_003788357.1| cold shock protein [Lactobacillus casei str. Zhang]
 gi|300438741|gb|ADK18507.1| Cold shock protein [Lactobacillus casei str. Zhang]
          Length = 73

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +K +N DKGYGFI  EG      D+F+H SA+  +G  +LT G+ V +  V+
Sbjct: 2  QGRVKNFNVDKGYGFIEAEGQP----DIFVHFSAINESGFKSLTPGETVDFVIVE 52


>gi|53720168|ref|YP_109154.1| cold shock-like protein [Burkholderia pseudomallei K96243]
 gi|76811439|ref|YP_334418.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|83720914|ref|YP_442133.1| cold-shock domain-contain protein [Burkholderia thailandensis
          E264]
 gi|126441090|ref|YP_001059958.1| cold-shock domain-contain protein [Burkholderia pseudomallei 668]
 gi|126452235|ref|YP_001067250.1| cold-shock domain-contain protein [Burkholderia pseudomallei
          1106a]
 gi|167581004|ref|ZP_02373878.1| cold-shock domain family protein [Burkholderia thailandensis
          TXDOH]
 gi|167619082|ref|ZP_02387713.1| cold-shock domain family protein [Burkholderia thailandensis Bt4]
 gi|167720733|ref|ZP_02403969.1| cold-shock domain family protein [Burkholderia pseudomallei DM98]
 gi|167739716|ref|ZP_02412490.1| cold-shock domain family protein [Burkholderia pseudomallei 14]
 gi|167816920|ref|ZP_02448600.1| cold-shock domain family protein [Burkholderia pseudomallei 91]
 gi|167825323|ref|ZP_02456794.1| cold-shock domain family protein [Burkholderia pseudomallei 9]
 gi|167846825|ref|ZP_02472333.1| cold-shock domain family protein [Burkholderia pseudomallei
          B7210]
 gi|167895416|ref|ZP_02482818.1| cold-shock domain family protein [Burkholderia pseudomallei 7894]
 gi|167903800|ref|ZP_02491005.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC
          13177]
 gi|167912067|ref|ZP_02499158.1| cold-shock domain family protein [Burkholderia pseudomallei 112]
 gi|167920041|ref|ZP_02507132.1| cold-shock domain family protein [Burkholderia pseudomallei
          BCC215]
 gi|217421179|ref|ZP_03452684.1| cold shock family protein [Burkholderia pseudomallei 576]
 gi|226193900|ref|ZP_03789502.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9]
 gi|226197837|ref|ZP_03793411.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9]
 gi|237813374|ref|YP_002897825.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|242316730|ref|ZP_04815746.1| cold shock family protein [Burkholderia pseudomallei 1106b]
 gi|254181035|ref|ZP_04887633.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
 gi|52210582|emb|CAH36565.1| cold shock-like protein [Burkholderia pseudomallei K96243]
 gi|76580892|gb|ABA50367.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|83654739|gb|ABC38802.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis E264]
 gi|126220583|gb|ABN84089.1| cold shock family protein [Burkholderia pseudomallei 668]
 gi|126225877|gb|ABN89417.1| cold shock family protein [Burkholderia pseudomallei 1106a]
 gi|184211574|gb|EDU08617.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
 gi|217396591|gb|EEC36608.1| cold shock family protein [Burkholderia pseudomallei 576]
 gi|225930025|gb|EEH26038.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9]
 gi|225934205|gb|EEH30190.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9]
 gi|237503488|gb|ACQ95806.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|242139969|gb|EES26371.1| cold shock family protein [Burkholderia pseudomallei 1106b]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V+++ V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMEGFKTLKENQRVSFE-VKTGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|313681671|ref|YP_004059409.1| cold-shock DNA-binding protein family [Sulfuricurvum kujiense DSM
          16994]
 gi|313154531|gb|ADR33209.1| cold-shock DNA-binding protein family [Sulfuricurvum kujiense DSM
          16994]
          Length = 72

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTEGQLVTYDYVQN 59
          V  G++KW+N +KG+GFI  +     G DVF+H   + S G    +L EGQ VTY   Q 
Sbjct: 4  VLNGTVKWFNSEKGFGFIQQD---NGGKDVFVHFRQINSTGYGRVSLDEGQKVTYTVGQG 60

Query: 60 D 60
          +
Sbjct: 61 E 61


>gi|229552085|ref|ZP_04440810.1| cold shock protein CspA [Lactobacillus rhamnosus LMS2-1]
 gi|229314518|gb|EEN80491.1| cold shock protein CspA [Lactobacillus rhamnosus LMS2-1]
 gi|328462896|gb|EGF34740.1| cold shock protein [Lactobacillus rhamnosus MTCC 5462]
          Length = 75

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +K +N DKGYGFI  EG      D+F+H SA+  +G  +LT G+ V +  V+
Sbjct: 3  QGRVKNFNVDKGYGFIEAEGQP----DIFVHFSAINESGFKSLTPGEQVDFVIVE 53


>gi|90419542|ref|ZP_01227452.1| cold shock family protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336479|gb|EAS50220.1| cold shock family protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 192

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KGYGF+T   + E  +D+F+H   +   G+  L  GQ V   + Q D  G+ +
Sbjct: 122 VKWFNRTKGYGFLT---TGEGTEDIFIHMETLRRFGMTELRPGQDVLVRFGQGD-KGRMA 177

Query: 67  AE 68
           AE
Sbjct: 178 AE 179



 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G IKW++  KG+GFI P+   + G D+ LH + +   G     EG  V  +  Q +
Sbjct: 28 GHIKWFDVSKGFGFIVPD---DGGADILLHVTCLRRDGHATALEGARVVCEVQQGE 80


>gi|20135600|gb|AAM09094.1| cold-shock protein CspD [Burkholderia multivorans]
          Length = 68

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V++D V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|309777855|ref|ZP_07672801.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914416|gb|EFP60210.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 65

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          RG +K +N +KGYGFIT     E G DVF H S +   G   +     V +D V+ D
Sbjct: 2  RGKVKMFNQEKGYGFIT----LEDGKDVFFHYSQLMMEGFKTIDADAEVEFDVVETD 54


>gi|238758372|ref|ZP_04619550.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
 gi|238703495|gb|EEP96034.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
          Length = 66

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +  +++ A G 
Sbjct: 3  GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IESGAKGP 58

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 59 SAVNVVAL 66


>gi|242247545|ref|NP_001156314.1| RNA-binding protein lin-28-like [Acyrthosiphon pisum]
 gi|239792625|dbj|BAH72634.1| ACYPI009849 [Acyrthosiphon pisum]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           V +G  KW+N  KG+GF+TP+   + G DVF+H+  +   G  +L E + V +   ++D
Sbjct: 70  VRQGICKWFNSKKGFGFVTPD---DGGKDVFVHQRVIKKDGFRSLRENEHVEFTCHESD 125


>gi|301059113|ref|ZP_07200063.1| cold shock protein CspB [delta proteobacterium NaphS2]
 gi|300446786|gb|EFK10601.1| cold shock protein CspB [delta proteobacterium NaphS2]
          Length = 66

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           G++KW++  KGYGFI      E G DVF+H S +   G   L EG  V+++
Sbjct: 3  EGTVKWFDEKKGYGFI----EQEDGPDVFVHFSGINGTGFKTLNEGARVSFE 50


>gi|183984628|ref|YP_001852919.1| cold shock-like protein B CspB [Mycobacterium marinum M]
 gi|183177954|gb|ACC43064.1| cold shock-like protein B CspB [Mycobacterium marinum M]
          Length = 134

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ DKG+GF+    S E G+DV++ RS+   AG+  L  GQ V +      A+G+
Sbjct: 4  GKVKWYDSDKGFGFL----SQEEGEDVYV-RSSALPAGVEGLKAGQRVEFGI----ASGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|254252966|ref|ZP_04946284.1| Cold-shock protein [Burkholderia dolosa AUO158]
 gi|124895575|gb|EAY69455.1| Cold-shock protein [Burkholderia dolosa AUO158]
 gi|325524697|gb|EGD02687.1| cold shock-like protein [Burkholderia sp. TJI49]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V++D V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|161525563|ref|YP_001580575.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          multivorans ATCC 17616]
 gi|189349709|ref|YP_001945337.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|221201211|ref|ZP_03574251.1| conserved domain protein [Burkholderia multivorans CGD2M]
 gi|221206335|ref|ZP_03579348.1| conserved domain protein [Burkholderia multivorans CGD2]
 gi|221213617|ref|ZP_03586591.1| conserved domain protein [Burkholderia multivorans CGD1]
 gi|160342992|gb|ABX16078.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
          ATCC 17616]
 gi|189333731|dbj|BAG42801.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|221166406|gb|EED98878.1| conserved domain protein [Burkholderia multivorans CGD1]
 gi|221173644|gb|EEE06078.1| conserved domain protein [Burkholderia multivorans CGD2]
 gi|221179061|gb|EEE11468.1| conserved domain protein [Burkholderia multivorans CGD2M]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V++D V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|52843021|ref|YP_096820.1| cold shock protein CspE [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|54295652|ref|YP_128067.1| hypothetical protein lpl2740 [Legionella pneumophila str. Lens]
 gi|54298813|ref|YP_125182.1| hypothetical protein lpp2878 [Legionella pneumophila str. Paris]
 gi|148361138|ref|YP_001252345.1| cold shock protein CspE [Legionella pneumophila str. Corby]
 gi|296108468|ref|YP_003620169.1| hypothetical protein lpa_04102 [Legionella pneumophila 2300/99
          Alcoy]
 gi|52630132|gb|AAU28873.1| cold shock protein CspE [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|53752598|emb|CAH14031.1| hypothetical protein lpp2878 [Legionella pneumophila str. Paris]
 gi|53755484|emb|CAH16983.1| hypothetical protein lpl2740 [Legionella pneumophila str. Lens]
 gi|148282911|gb|ABQ56999.1| cold shock protein CspE [Legionella pneumophila str. Corby]
 gi|295650370|gb|ADG26217.1| hypothetical protein lpa_04102 [Legionella pneumophila 2300/99
          Alcoy]
 gi|307611696|emb|CBX01390.1| hypothetical protein LPW_30821 [Legionella pneumophila 130b]
          Length = 68

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG++KW+N  KG+GF+        G D F+H SA+  +G   L EG  V +
Sbjct: 6  RGTVKWFNESKGFGFLES-----GGKDYFVHFSAIQGSGFKTLAEGATVMF 51


>gi|311107231|ref|YP_003980084.1| cold shock protein CapA [Achromobacter xylosoxidans A8]
 gi|310761920|gb|ADP17369.1| cold shock protein CapA [Achromobacter xylosoxidans A8]
          Length = 69

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KW+N DKG+GFI PE     G D+F H S +   G  +L E Q V++
Sbjct: 3  IETGIVKWFNNDKGFGFIMPE---LGGKDLFAHFSEIQGDGHKSLEENQRVSF 52


>gi|254823203|ref|ZP_05228204.1| CspB [Mycobacterium intracellulare ATCC 13950]
          Length = 135

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ DKG+GF+    S E G+DV++ RS+   AG+  L  GQ V +      A+G+
Sbjct: 4  GKVKWYDADKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGI----ASGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|213648751|ref|ZP_03378804.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
          Length = 39

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 3/36 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
          G +KW+NP+KG+GFITP+   +   DVF+H SA+ S
Sbjct: 7  GLVKWFNPEKGFGFITPK---DGSKDVFVHFSAIQS 39


>gi|199598150|ref|ZP_03211572.1| Cold shock protein [Lactobacillus rhamnosus HN001]
 gi|258508287|ref|YP_003171038.1| cold shock protein [Lactobacillus rhamnosus GG]
 gi|258539501|ref|YP_003174000.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
 gi|199590911|gb|EDY98995.1| Cold shock protein [Lactobacillus rhamnosus HN001]
 gi|257148214|emb|CAR87187.1| Cold shock protein [Lactobacillus rhamnosus GG]
 gi|257151177|emb|CAR90149.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
 gi|259649604|dbj|BAI41766.1| cold shock protein [Lactobacillus rhamnosus GG]
          Length = 74

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +K +N DKGYGFI  EG      D+F+H SA+  +G  +LT G+ V +  V+
Sbjct: 2  QGRVKNFNVDKGYGFIEAEGQP----DIFVHFSAINESGFKSLTPGEQVDFVIVE 52


>gi|87121680|ref|ZP_01077567.1| Cold-shock protein, DNA-binding [Marinomonas sp. MED121]
 gi|86162931|gb|EAQ64209.1| Cold-shock protein, DNA-binding [Marinomonas sp. MED121]
          Length = 79

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++KW+N  KG GFI  +       DVF+H  ++ S G   L +GQ V++   +ND
Sbjct: 6  KGTVKWFNDSKGVGFIQRDNEA----DVFVHYKSIVSEGHKTLKKGQAVSFFITEND 58


>gi|171057778|ref|YP_001790127.1| cold-shock DNA-binding domain-containing protein [Leptothrix
          cholodnii SP-6]
 gi|170775223|gb|ACB33362.1| cold-shock DNA-binding domain protein [Leptothrix cholodnii SP-6]
          Length = 72

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58
          G +KW++  KG+GFITPE   + G D+F H S + + G F +L E Q V ++  Q
Sbjct: 8  GIVKWFDDGKGFGFITPE---DGGKDLFAHHSEIRNGGGFRSLQENQRVEFETKQ 59


>gi|15828153|ref|NP_302416.1| cold shock protein [Mycobacterium leprae TN]
 gi|221230630|ref|YP_002504046.1| putative cold shock protein [Mycobacterium leprae Br4923]
 gi|2440094|emb|CAB16651.1| small cold-shock protein [Mycobacterium leprae]
 gi|13093707|emb|CAC31102.1| probable cold shock protein [Mycobacterium leprae]
 gi|219933737|emb|CAR72244.1| probable cold shock protein [Mycobacterium leprae Br4923]
          Length = 136

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ DKG+GF+    S E G+DV++ RS+   AG+  L  GQ V +      A+G+
Sbjct: 4  GKVKWYDADKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGV----ASGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|225575513|ref|ZP_03784123.1| hypothetical protein RUMHYD_03605 [Blautia hydrogenotrophica DSM
          10507]
 gi|225037263|gb|EEG47509.1| hypothetical protein RUMHYD_03605 [Blautia hydrogenotrophica DSM
          10507]
          Length = 77

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          V  G++KW++P KGYGFI    + ++G + F+H+S +   G  +L  G+ V+Y
Sbjct: 12 VEHGTVKWFDPVKGYGFI----AGDNGKETFVHQSDILMRGFRHLETGERVSY 60


>gi|146299007|ref|YP_001193598.1| cold-shock DNA-binding domain-containing protein [Flavobacterium
          johnsoniae UW101]
 gi|146153425|gb|ABQ04279.1| cold-shock DNA-binding protein family [Flavobacterium johnsoniae
          UW101]
          Length = 64

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 7/63 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KGYGFIT E   E+G D+F+H S + +     L EG  V+Y+  +    GK
Sbjct: 4  GTVKFFNESKGYGFITDE---ETGKDIFVHASGINAE---ELREGDRVSYEE-EEGRKGK 56

Query: 65 YSA 67
           +A
Sbjct: 57 VAA 59


>gi|172055299|ref|YP_001806626.1| putative cold shock protein, DNA-binding [Cyanothece sp. ATCC
          51142]
 gi|171701580|gb|ACB54560.1| putative cold shock protein, DNA-binding [Cyanothece sp. ATCC
          51142]
          Length = 64

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 6/52 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G +KW++  KGYGFI  +   + G+D+F+H S V S    +L EGQ V Y+
Sbjct: 3  QGQVKWFDTQKGYGFIAQQ---DGGEDLFVHYSEVQSQ---SLEEGQTVEYE 48


>gi|225023129|ref|ZP_03712321.1| hypothetical protein CORMATOL_03178 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305681903|ref|ZP_07404707.1| cold-shock DNA-binding domain protein [Corynebacterium
          matruchotii ATCC 14266]
 gi|224944352|gb|EEG25561.1| hypothetical protein CORMATOL_03178 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305658376|gb|EFM47879.1| cold-shock DNA-binding domain protein [Corynebacterium
          matruchotii ATCC 14266]
          Length = 132

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 15/80 (18%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+PD+G+GFI    S   G+D ++ +S V   G+  L  GQ V +D+    A+G 
Sbjct: 4  GKVKWYDPDRGFGFI----SNPDGEDCYVGKS-VLPHGVTELHRGQRVDFDF----ASGA 54

Query: 65 YSAENLKL------VPKSSN 78
             + L++       P+S N
Sbjct: 55 RGPQALRVKILDEPRPRSRN 74


>gi|119357559|ref|YP_912203.1| cold-shock DNA-binding protein family protein [Chlorobium
          phaeobacteroides DSM 266]
 gi|119354908|gb|ABL65779.1| cold-shock DNA-binding protein family [Chlorobium
          phaeobacteroides DSM 266]
          Length = 85

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 4  RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          R  +KW++  KGYGFI  PEG    G+D+F+H SA+     F +   Q    D+      
Sbjct: 3  RSKVKWFDGKKGYGFIVNPEG----GEDIFVHFSAIICEQSFKVL-NQDADVDFELEKTQ 57

Query: 63 GKYSAENLKLVP 74
            + A+N++ VP
Sbjct: 58 KGFQAKNVREVP 69


>gi|121601754|ref|YP_989122.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
           KC583]
 gi|120613931|gb|ABM44532.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
           KC583]
          Length = 179

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N DKG+GF++    TE   D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 105 LERAIVKWFNRDKGFGFLSRGQGTE---DIFIHMETLRRFGLTELRAGQVVIVRFGKGE- 160

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 161 KGLMTAE 167



 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G IKW++  KGYGF+TP+       D+ LH S +   G     EG  V 
Sbjct: 16 GIIKWFDSSKGYGFVTPDFPKLP--DILLHISVMQRDGFQTALEGAKVV 62


>gi|319948064|ref|ZP_08022237.1| CspB [Dietzia cinnamea P4]
 gi|319438269|gb|EFV93216.1| CspB [Dietzia cinnamea P4]
          Length = 133

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 9/69 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF++ EG    G+DV++ R+    AG+  L   Q V +D V    +G+
Sbjct: 4  GKVKWYDAEKGFGFLSQEG----GEDVYV-RADALPAGVETLRPRQRVEFDMV----SGR 54

Query: 65 YSAENLKLV 73
             + L++V
Sbjct: 55 RGPQALRVV 63


>gi|270158155|ref|ZP_06186812.1| cold shock domain family protein [Legionella longbeachae D-4968]
 gi|289163584|ref|YP_003453722.1| stress protein, member of the CspA-family [Legionella longbeachae
          NSW150]
 gi|269990180|gb|EEZ96434.1| cold shock domain family protein [Legionella longbeachae D-4968]
 gi|288856757|emb|CBJ10568.1| stress protein, member of the CspA-family [Legionella longbeachae
          NSW150]
          Length = 69

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG++KW+N  KG+GF+        G D F+H SA++  G   L EG  V +
Sbjct: 6  RGTVKWFNESKGFGFL-----ESGGKDYFVHFSAISGTGFKTLAEGATVVF 51


>gi|254496062|ref|ZP_05108963.1| cold shock protein CspE [Legionella drancourtii LLAP12]
 gi|254354704|gb|EET13338.1| cold shock protein CspE [Legionella drancourtii LLAP12]
          Length = 68

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG++KW+N  KG+GF+        G D F+H SA+  +G   L EG  V +
Sbjct: 6  RGTVKWFNESKGFGFLES-----GGKDYFVHFSAIQGSGFKTLAEGATVMF 51


>gi|237653147|ref|YP_002889461.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
 gi|237624394|gb|ACR01084.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
          Length = 204

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQN 59
          M H+G I  +  DKG+GFITP G    G+ VF+H S++A+       EG +LV+Y+ +  
Sbjct: 1  MRHQGKITTWKDDKGFGFITPNG---GGEPVFVHVSSLANRQ--RRPEGTELVSYE-LAT 54

Query: 60 DANGKYSAENLKLV 73
          DA G+  A+ +  V
Sbjct: 55 DAKGRLQAKAVAFV 68


>gi|330983247|gb|EGH81350.1| cold shock protein [Pseudomonas syringae pv. aptata str. DSM
          50252]
          Length = 36

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 27/34 (79%), Gaps = 4/34 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G++KW+N +KG+GFITP    +SGDD+F+H  A+
Sbjct: 7  GTVKWFNDEKGFGFITP----QSGDDLFVHFKAI 36


>gi|310827425|ref|YP_003959782.1| cold shock protein CspA [Eubacterium limosum KIST612]
 gi|308739159|gb|ADO36819.1| cold shock protein CspA [Eubacterium limosum KIST612]
          Length = 66

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  EG  E+G+D+F+  S++      +L +G  V Y+  Q D   +
Sbjct: 4  GTVKWFNSNKGFGFI--EG--ENGEDIFVLFSSIVGGNCESLRDGDKVIYETEQGDR--Q 57

Query: 65 YSAENLKLV 73
            A++++LV
Sbjct: 58 LRAKSVQLV 66


>gi|167646972|ref|YP_001684635.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
          K31]
 gi|167349402|gb|ABZ72137.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
          Length = 201

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G +KW++  KGYGFI P+   ++G  DV LH +++ + G     EG ++  D V+ 
Sbjct: 20 GRVKWFDTGKGYGFIVPDDPGQTGLKDVLLHVTSLRNCGRETALEGAVIVCDVVKR 75



 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
            R  +KW+N  KGYGF+  +G      D+F+H   +   GL +L  G  V   + +
Sbjct: 134 ERAKVKWFNRTKGYGFVVRDGQP---GDIFVHIETLRRGGLEDLQPGDDVMVRFAE 186


>gi|330465294|ref|YP_004403037.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
 gi|328808265|gb|AEB42437.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
          Length = 128

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 7/69 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+  KGYGF+T    ++ G DVFL ++A+  AG+ +L  GQ + +  V  D+   
Sbjct: 4  GRVKWYDATKGYGFVT----SDEGGDVFLPKAAL-PAGVTDLKGGQRIDFSVV--DSRRG 56

Query: 65 YSAENLKLV 73
            A  +KL+
Sbjct: 57 TQAMGVKLL 65


>gi|284007581|emb|CBA73141.1| cold shock protein [Arsenophonus nasoniae]
          Length = 80

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +  G +KW++  +GYGFI+P      G D++++R A+A+     L EGQ V +   +N
Sbjct: 12 LQMGRVKWFDVKEGYGFISP---VNGGQDIYVNRRAIANTKNKWLKEGQCVEFSITRN 66


>gi|25027451|ref|NP_737505.1| putative cold shock protein [Corynebacterium efficiens YS-314]
 gi|23492733|dbj|BAC17705.1| putative cold shock protein [Corynebacterium efficiens YS-314]
          Length = 127

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KWY+P++G+GF+    S   G+D F+ +  V   G+  L +GQ + +D+    A G+
Sbjct: 4  GTVKWYDPERGFGFV----SNPGGEDCFVGKQ-VLPKGVTELHQGQRIEFDF----AAGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 KGPQALRV 62


>gi|116494772|ref|YP_806506.1| cold shock protein [Lactobacillus casei ATCC 334]
 gi|191638285|ref|YP_001987451.1| Cold-shock protein [Lactobacillus casei BL23]
 gi|116104922|gb|ABJ70064.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC
          334]
 gi|190712587|emb|CAQ66593.1| Cold-shock protein [Lactobacillus casei BL23]
 gi|327385511|gb|AEA56985.1| Cold shock domain protein [Lactobacillus casei BD-II]
          Length = 73

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +K +N DKGYGFI  EG      D+F+H SA+   G  +LT G+ V +  V+
Sbjct: 2  QGRVKNFNVDKGYGFIEAEGQP----DIFVHFSAINEPGFKSLTPGETVDFVIVE 52


>gi|238755702|ref|ZP_04617036.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
 gi|238706069|gb|EEP98452.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
          Length = 66

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GFI+P    +   DVF+H SA+ S+    L EGQ V +   Q
Sbjct: 3  GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSSDFKTLDEGQNVEFSIEQ 53


>gi|167563689|ref|ZP_02356605.1| cold-shock domain family protein [Burkholderia oklahomensis
          EO147]
 gi|167570839|ref|ZP_02363713.1| cold-shock domain family protein [Burkholderia oklahomensis
          C6786]
          Length = 67

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V+++ V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIKMDGFKTLKENQRVSFE-VKTGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|254495787|ref|ZP_05108699.1| cold shock-like protein [Legionella drancourtii LLAP12]
 gi|254354944|gb|EET13567.1| cold shock-like protein [Legionella drancourtii LLAP12]
          Length = 72

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++K +N  KGYGFITP+ + ES  +VF+H S VA AG   L E Q ++Y
Sbjct: 6  GTVKRFNKIKGYGFITPD-TGES--EVFVHFSEVAVAGYKELKENQRISY 52


>gi|38233375|ref|NP_939142.1| cold shock protein B [Corynebacterium diphtheriae NCTC 13129]
 gi|38199635|emb|CAE49294.1| cold shock protein B [Corynebacterium diphtheriae]
          Length = 129

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 24/86 (27%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV------ 57
          +G + WY+ DKG+GF+    S   GDD F+ +  V   G+  L +GQ V +DYV      
Sbjct: 3  QGKVLWYDVDKGFGFV----SNPEGDDCFVSKD-VLPQGVQKLEKGQRVEFDYVARGRGP 57

Query: 58 -------------QNDANGKYSAENL 70
                       +  A  KYSAE L
Sbjct: 58 QALRIKVLDTPRLRRPAQHKYSAEEL 83


>gi|257455421|ref|ZP_05620656.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
 gi|257447383|gb|EEV22391.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
          Length = 70

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           +G +KW+N  KG+GFI       SG+D+F+H  A+   G  +L +GQ V +  V+
Sbjct: 5  EQGIVKWFNDSKGFGFI----QRNSGEDIFVHFRAIQGDGYRSLQDGQKVEFIVVE 56


>gi|329298247|ref|ZP_08255583.1| cold shock-like protein CspD [Plautia stali symbiont]
          Length = 73

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI P G     +D+F H S +   G   L  GQ V +D
Sbjct: 4  GTVKWFNNTKGFGFICPIGGD---NDIFAHYSTIQMEGYRTLKAGQHVQFD 51


>gi|324511297|gb|ADY44709.1| Y-box factor [Ascaris suum]
          Length = 294

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 7/59 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          +G++KW+N   GYGFI      ++G+D+F+H++AV        L +L +G+ V +D V+
Sbjct: 39 QGTVKWFNVKNGYGFIN---RADTGEDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVE 94


>gi|242239550|ref|YP_002987731.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
 gi|242131607|gb|ACS85909.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
          Length = 70

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++  KG+GFITP+  ++   DVF+H SA+ S     L EGQ V +
Sbjct: 7  GLVKWFDAGKGFGFITPDNGSK---DVFVHFSAIQSDDYKTLYEGQKVEF 53


>gi|328955745|ref|YP_004373078.1| cold-shock DNA-binding protein family [Coriobacterium glomerans
          PW2]
 gi|328456069|gb|AEB07263.1| cold-shock DNA-binding protein family [Coriobacterium glomerans
          PW2]
          Length = 76

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 8  KWYNPDKGYGFITPEGSTESGD--DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
          K +  +KGYGFITP+ + E G   DVF+H SA+   G  +L EG  V ++  +    G+ 
Sbjct: 8  KSFFREKGYGFITPDDAPEDGSKSDVFVHFSALQMDGFKSLDEGDRVEFELGEGKKPGET 67

Query: 66 SAENLKLV 73
           A N++ +
Sbjct: 68 QAINVRKI 75


>gi|57339760|gb|AAW49867.1| hypothetical protein FTT0391 [synthetic construct]
          Length = 102

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 6/52 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++K++N  KG+GFITPE     G DVF+H S +       L EGQ VT++
Sbjct: 32 QGTVKFFNEQKGFGFITPEN---GGKDVFVHISKLNGE---TLAEGQQVTFE 77


>gi|21222717|ref|NP_628496.1| cold shock protein B [Streptomyces coelicolor A3(2)]
 gi|256786208|ref|ZP_05524639.1| cold shock protein B [Streptomyces lividans TK24]
 gi|289770100|ref|ZP_06529478.1| cold shock protein B [Streptomyces lividans TK24]
 gi|8249978|emb|CAB93399.1| cold shock protein B [Streptomyces coelicolor A3(2)]
 gi|289700299|gb|EFD67728.1| cold shock protein B [Streptomyces lividans TK24]
          Length = 127

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+ +L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVESLKPGQRVEFGVV 51


>gi|332288226|ref|YP_004419078.1| stationary phase/starvation inducible regulatory protein CspD
          [Gallibacterium anatis UMN179]
 gi|330431122|gb|AEC16181.1| stationary phase/starvation inducible regulatory protein CspD
          [Gallibacterium anatis UMN179]
          Length = 69

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI+ EG      D+F H S +   G  +L  GQ V ++ V  D    
Sbjct: 4  GVVKWFNNAKGFGFISVEGHE---GDIFAHYSVIEMDGYRSLKAGQKVQFEAVHGDKG-- 58

Query: 65 YSAENLKLVP 74
            +   K+VP
Sbjct: 59 --SHATKIVP 66


>gi|163868307|ref|YP_001609516.1| cold shock protein [Bartonella tribocorum CIP 105476]
 gi|161017963|emb|CAK01521.1| cold shock protein [Bartonella tribocorum CIP 105476]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N DKG+GF++    TE   D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 117 LERAIVKWFNRDKGFGFLSRGQGTE---DIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMTAE 179



 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          G IKW++  KGYGFI P+       D+ LH + +   G     EG  V
Sbjct: 28 GVIKWFDGSKGYGFIVPD--LPHFPDILLHVTVMRRDGFQTAMEGAKV 73


>gi|327482221|gb|AEA85531.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          stutzeri DSM 4166]
          Length = 235

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  RG++K +N DKG+GFI PE   + G+++F+H SAV   G      G  V +     D
Sbjct: 1  MERRGTLKSWNDDKGFGFIRPE---QGGEELFVHISAV--HGERRPLVGDRVLF-VAGRD 54

Query: 61 ANGKYSAENLKL 72
          A G+  AE+++L
Sbjct: 55 AQGRLRAEHVRL 66


>gi|298291596|ref|YP_003693535.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296928107|gb|ADH88916.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 199

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G+IKW++  KGYGF+ P+G    G DV LH + +   G     EG  +  + V  +
Sbjct: 36 GTIKWFDVSKGYGFVVPDG---GGSDVLLHVTCLRRGGFNTAQEGARIVCEAVARE 88



 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           R  +KW+N  +G+GF++     E  +D+F+H   +   GL  L  GQ+V   +
Sbjct: 127 RAWVKWFNRLRGFGFLS---RGEGTEDIFVHMETLRRHGLTELRPGQMVLVRF 176


>gi|227535230|ref|ZP_03965279.1| cold shock protein CspA [Lactobacillus paracasei subsp. paracasei
          ATCC 25302]
 gi|239631631|ref|ZP_04674662.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
          subsp. paracasei 8700:2]
 gi|227187114|gb|EEI67181.1| cold shock protein CspA [Lactobacillus paracasei subsp. paracasei
          ATCC 25302]
 gi|239526096|gb|EEQ65097.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
          subsp. paracasei 8700:2]
          Length = 73

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G +K +N DKGYGFI  EG      D+F+H SA+   G  +LT G+ V +  V+
Sbjct: 2  QGRVKNFNVDKGYGFIEAEGQP----DIFVHFSAINEPGFKSLTPGETVDFVIVE 52


>gi|145596458|ref|YP_001160755.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440]
 gi|145305795|gb|ABP56377.1| cold-shock DNA-binding protein family [Salinispora tropica
          CNB-440]
          Length = 128

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+  KGYGF+T     + G DVFL ++A+  AG+ +L  GQ V +  V +    +
Sbjct: 4  GRVKWYDATKGYGFVT----NDEGGDVFLPKAAL-PAGVTDLKGGQRVDFSVVDSRRGAQ 58

Query: 65 YSAENLKLVPKS 76
               L   P S
Sbjct: 59 AMGVKLLEAPPS 70


>gi|117927315|ref|YP_871866.1| cold-shock DNA-binding protein family protein [Acidothermus
          cellulolyticus 11B]
 gi|117647778|gb|ABK51880.1| cold-shock DNA-binding protein family [Acidothermus
          cellulolyticus 11B]
          Length = 129

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 5/55 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G +KWY+P+KG+GF+T     + G DVF+  SA+  AG+ +L  G  V +  V++
Sbjct: 4  GKVKWYDPEKGFGFLT----RDDGGDVFVRASAL-PAGVTSLKPGSRVEFGIVES 53


>gi|10955166|ref|NP_059822.1| hypothetical protein pTi_150 [Agrobacterium tumefaciens]
 gi|8572732|gb|AAF77178.1| ysb [Agrobacterium tumefaciens]
 gi|11124691|emb|CAC15178.1| CspA-like protein [Agrobacterium tumefaciens]
          Length = 100

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  K +GFITP+   + G DVFLH S++       L  G  + Y   Q    GK
Sbjct: 4  GKVKWFDATKRFGFITPD---DGGPDVFLHLSSITDPACPTLHPGFRLHYGVEQR--GGK 58

Query: 65 YSAENLKLVP 74
           +A +++  P
Sbjct: 59 VTASDVRPAP 68


>gi|295110047|emb|CBL24000.1| cold-shock DNA-binding protein family [Ruminococcus obeum A2-162]
          Length = 75

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
          ++KW++  KGYGFIT     E G D F H S +   G   L+ GQ V ++    DANG+ 
Sbjct: 8  TVKWFSAQKGYGFIT----GEDGIDYFAHFSEIQMDGYRKLSGGQPVLFE-AGTDANGRS 62

Query: 66 SAENL 70
           A+N+
Sbjct: 63 LAKNI 67


>gi|222085261|ref|YP_002543791.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221722709|gb|ACM25865.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 68

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K ++ +KGYGFI P   T+    +F+H   V  +GL  L +GQ + ++ ++ D  G+
Sbjct: 4  GIVKNFDLEKGYGFIQP---TDGSVAIFVHAKIVVKSGLETLKKGQKLIFE-IEQDGMGR 59

Query: 65 YSAENLKL 72
           S   L+L
Sbjct: 60 SSISKLRL 67


>gi|311746405|ref|ZP_07720190.1| putative cold shock protein [Algoriphagus sp. PR1]
 gi|126575291|gb|EAZ79623.1| putative cold shock protein [Algoriphagus sp. PR1]
          Length = 64

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K++N  KG+GFITP+ S E   DVF+H+S +    + ++ E   V+Y+ VQ   
Sbjct: 1  MNEGTVKFFNTTKGFGFITPDDSDE---DVFVHQSGL----VHDIRENDKVSYELVQGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--VNAVNVKVI 63


>gi|15889107|ref|NP_354788.1| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|15156913|gb|AAK87573.1| cold shock protein [Agrobacterium tumefaciens str. C58]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   GL  L  GQ+V   Y   D 
Sbjct: 117 LERAIVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRYGDGD- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMAAE 179



 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
          G +KW++  KG+GFI P+  T+   DV LH S +   G   + EG
Sbjct: 28 GVVKWFDVAKGFGFIVPDNGTQ---DVLLHVSCLRRDGYQTILEG 69


>gi|51595763|ref|YP_069954.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953]
 gi|108806689|ref|YP_650605.1| cold shock-like protein [Yersinia pestis Antiqua]
 gi|108812740|ref|YP_648507.1| cold shock-like protein [Yersinia pestis Nepal516]
 gi|145599569|ref|YP_001163645.1| cold shock-like protein [Yersinia pestis Pestoides F]
 gi|153948246|ref|YP_001401539.1| cold shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|162421137|ref|YP_001606435.1| cold shock DNA-binding domain-containing protein [Yersinia pestis
          Angola]
 gi|165924490|ref|ZP_02220322.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165938972|ref|ZP_02227525.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166009860|ref|ZP_02230758.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166211781|ref|ZP_02237816.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167399726|ref|ZP_02305244.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167419851|ref|ZP_02311604.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167424222|ref|ZP_02315975.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|167469384|ref|ZP_02334088.1| cold shock protein [Yersinia pestis FV-1]
 gi|170024887|ref|YP_001721392.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186894842|ref|YP_001871954.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|218928546|ref|YP_002346421.1| cold shock-like protein [Yersinia pestis CO92]
 gi|229841368|ref|ZP_04461527.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str.
          PEXU2]
 gi|229843473|ref|ZP_04463619.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str.
          India 195]
 gi|229895846|ref|ZP_04511016.1| Cold shock-like protein [Yersinia pestis Pestoides A]
 gi|229903148|ref|ZP_04518261.1| Cold shock-like protein [Yersinia pestis Nepal516]
 gi|270486942|ref|ZP_06204016.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|51589045|emb|CAH20663.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953]
 gi|108776388|gb|ABG18907.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108778602|gb|ABG12660.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
 gi|115347157|emb|CAL20050.1| cold shock-like protein [Yersinia pestis CO92]
 gi|145211265|gb|ABP40672.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|152959741|gb|ABS47202.1| cold shock DNA-binding domain protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|162353952|gb|ABX87900.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
 gi|165913119|gb|EDR31743.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165923550|gb|EDR40682.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165991256|gb|EDR43557.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166207552|gb|EDR52032.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166962592|gb|EDR58613.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167050434|gb|EDR61842.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167057071|gb|EDR66834.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169751421|gb|ACA68939.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186697868|gb|ACC88497.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229678918|gb|EEO75021.1| Cold shock-like protein [Yersinia pestis Nepal516]
 gi|229689820|gb|EEO81881.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str.
          India 195]
 gi|229697734|gb|EEO87781.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str.
          PEXU2]
 gi|229700769|gb|EEO88798.1| Cold shock-like protein [Yersinia pestis Pestoides A]
 gi|270335446|gb|EFA46223.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|320015742|gb|ADV99313.1| Cold shock-like protein [Yersinia pestis biovar Medievalis str.
          Harbin 35]
          Length = 69

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  +GYGFI+P    + G DV+++++A+A+    +L EGQ V +
Sbjct: 6  GRVKWFNQSEGYGFISPH---DGGSDVYVNKTAIANTKNKSLNEGQDVEF 52


>gi|238062313|ref|ZP_04607022.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|237884124|gb|EEP72952.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
          Length = 128

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+  KGYGF+T    ++ G DVFL + A+  AG+ +L  GQ V +  V +    +
Sbjct: 4  GRVKWYDAAKGYGFVT----SDEGGDVFLPKGAL-PAGVTDLKGGQRVDFSVVDSRRGAQ 58

Query: 65 YSAENLKLVPKS 76
               L   P S
Sbjct: 59 AMGVKLLEAPPS 70


>gi|91203628|emb|CAJ71281.1| similar to Cold shock protein (CspB) [Candidatus Kuenenia
          stuttgartiensis]
          Length = 79

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GFI  +G    G DVF+H S +   G   L +G+ V ++ V+
Sbjct: 15 GKVKWFDAKKGFGFIEQDG----GGDVFVHYSNIGGDGFKTLEDGEKVEFEVVE 64


>gi|288922018|ref|ZP_06416226.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
 gi|288346634|gb|EFC80955.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
          Length = 131

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++ D+G+GF+    S + GDDVF+H++A+  AG+  L  G  V +
Sbjct: 4  GKVKWFDVDRGFGFL----SRDDGDDVFVHKAAL-PAGVDRLKPGDRVEF 48


>gi|22126652|ref|NP_670075.1| cold shock-like protein [Yersinia pestis KIM 10]
 gi|45441022|ref|NP_992561.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
          91001]
 gi|149366655|ref|ZP_01888689.1| cold shock-like protein [Yersinia pestis CA88-4125]
 gi|21959665|gb|AAM86326.1|AE013880_6 cold shock protein [Yersinia pestis KIM 10]
 gi|45435881|gb|AAS61438.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
 gi|149291029|gb|EDM41104.1| cold shock-like protein [Yersinia pestis CA88-4125]
          Length = 77

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  +GYGFI+P    + G DV+++++A+A+    +L EGQ V +
Sbjct: 14 GRVKWFNQSEGYGFISPH---DGGSDVYVNKTAIANTKNKSLNEGQDVEF 60


>gi|49475595|ref|YP_033636.1| cold shock protein [Bartonella henselae str. Houston-1]
 gi|49238402|emb|CAF27629.1| Cold shock protein [Bartonella henselae str. Houston-1]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N DKG+GF++    TE   D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 117 LERAIVKWFNRDKGFGFLSRGQGTE---DIFVHMETLRRFGLAELRSGQVVLVRFGKGE- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMTAE 179



 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G IKW++  KGYGFI P+    +  D+ LH + +   G   + EG  V 
Sbjct: 28 GVIKWFDGSKGYGFIVPD--LPNCPDILLHVTVMRRDGFQTVLEGAKVV 74


>gi|33595179|ref|NP_882822.1| cold shock protein [Bordetella parapertussis 12822]
 gi|33599462|ref|NP_887022.1| cold shock protein [Bordetella bronchiseptica RB50]
 gi|33565256|emb|CAE36055.1| cold shock protein [Bordetella parapertussis]
 gi|33567058|emb|CAE30971.1| cold shock protein [Bordetella bronchiseptica RB50]
          Length = 67

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KW+N +KG+GFI PE     G D+F H S +   G   L E Q V+Y
Sbjct: 1  MQTGIVKWFNDEKGFGFIMPE---NGGPDLFAHYSEIQGEGHKALVEQQRVSY 50


>gi|302529053|ref|ZP_07281395.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
 gi|302437948|gb|EFL09764.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
          Length = 67

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++KW+N +KG+GFI+P+   +   DVF+H S +   G  +L E   V ++  Q
Sbjct: 3  QGTVKWFNAEKGFGFISPD---DGSADVFVHYSEIQGNGFRSLDENARVEFEVGQ 54


>gi|251771202|gb|EES51783.1| putative cold-shock DNA-binding domain protein [Leptospirillum
          ferrodiazotrophum]
          Length = 320

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G +K YNPDKGYG I      + G ++F+H SA+ + GL  L  GQ V ++
Sbjct: 3  KGRVKAYNPDKGYGTIL----LDDGQEIFVHGSAIQTDGLKVLEAGQRVRFE 50


>gi|71909055|ref|YP_286642.1| cold-shock protein, DNA-binding:protein of unknown function
          DUF1294 [Dechloromonas aromatica RCB]
 gi|71848676|gb|AAZ48172.1| Cold-shock protein, DNA-binding:Protein of unknown function
          DUF1294 [Dechloromonas aromatica RCB]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G I  +  D+GYGFITP G    G+ VFLH  A        + E ++VTY+ +Q D
Sbjct: 1  MRLQGRITSWKDDQGYGFITPNG---GGNPVFLHIKAFTRRQPRPVGE-EIVTYE-LQQD 55

Query: 61 ANGKYSAENLKLV 73
            G++ AE+++ V
Sbjct: 56 KRGRWRAESVEFV 68


>gi|254363803|ref|ZP_04979849.1| cold shock-like protein B cspB [Mycobacterium tuberculosis str.
          Haarlem]
 gi|134149317|gb|EBA41362.1| cold shock-like protein B cspB [Mycobacterium tuberculosis str.
          Haarlem]
          Length = 135

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+PDKG+GF++ EG    G+DV++  SA+ +  +  L  GQ V +      A+G+
Sbjct: 4  GKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPTF-VEALKAGQRVEFGI----ASGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|302552283|ref|ZP_07304625.1| cold shock protein B [Streptomyces viridochromogenes DSM 40736]
 gi|302469901|gb|EFL32994.1| cold shock protein B [Streptomyces viridochromogenes DSM 40736]
          Length = 127

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVETLKPGQRVEFGVV 51


>gi|84503413|ref|ZP_01001473.1| cold shock DNA-binding domain protein [Oceanicola batsensis
           HTCC2597]
 gi|84388200|gb|EAQ01152.1| cold shock DNA-binding domain protein [Oceanicola batsensis
           HTCC2597]
          Length = 179

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N DKG+GF    G T   DDVF+H   + ++GL +L  G+ V    V +   GK +
Sbjct: 108 VKWFNKDKGFGFANVFGGT---DDVFIHVEVLRASGLADLQPGEAVAL-RVIDGRRGKMA 163

Query: 67  AE 68
           +E
Sbjct: 164 SE 165



 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW++P +G+GF+  E   + G D+ LH + + + G  ++ +G  ++ 
Sbjct: 13 GTVKWFDPGRGFGFVVSE---DGGPDILLHANVLRNFGQSSVADGAKISI 59


>gi|292490283|ref|YP_003525722.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
          Nc4]
 gi|291578878|gb|ADE13335.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
          Nc4]
          Length = 70

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KGYGFI  E     G D+F+H  ++   G  +L EGQ V++
Sbjct: 7  GTVKWFNDAKGYGFIQRE---SGGSDLFVHFRSITGHGHKSLEEGQQVSF 53


>gi|254481328|ref|ZP_05094573.1| 'Cold-shock' DNA-binding domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214038491|gb|EEB79153.1| 'Cold-shock' DNA-binding domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 145

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
             G +KW+N  KG+GFIT     + G+++F+H  ++   G   L +GQ V+  +V+ + +
Sbjct: 81  EEGEVKWFNVSKGFGFIT----KDDGEEIFVHFRSIIGEGRRGLKDGQRVS--FVEANTD 134

Query: 63  GKYSAENLK 71
               AEN++
Sbjct: 135 KGPQAENVE 143


>gi|150017640|ref|YP_001309894.1| cold-shock DNA-binding domain-containing protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|149904105|gb|ABR34938.1| putative cold-shock DNA-binding domain protein [Clostridium
          beijerinckii NCIMB 8052]
          Length = 69

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 5/52 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYD 55
          G +KW++ ++GYGFI    S + GDDVF+H S +   G   +L E + VT+D
Sbjct: 6  GVVKWFDTERGYGFI----SCDKGDDVFVHHSQIKDKGPDKDLHEDESVTFD 53


>gi|3831556|gb|AAC69999.1| major cold shock protein [Enterococcus faecalis]
          Length = 50

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          KG+GFI+PE     G+DVF+H SA+   G   L EGQ VT+D V++   G  +A
Sbjct: 1  KGFGFISPE----DGNDVFVHFSAIQGDGFKTLEEGQAVTFD-VEDGHRGPQAA 49


>gi|124267389|ref|YP_001021393.1| cold-shock DNA-binding protein family protein [Methylibium
          petroleiphilum PM1]
 gi|124260164|gb|ABM95158.1| cold-shock DNA-binding protein family [Methylibium petroleiphilum
          PM1]
          Length = 69

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          V  G++KW+N  KG+GFI  +G    G DVF H   +   G   L E Q V ++  Q
Sbjct: 3  VQTGTVKWFNEAKGFGFIAQDG---GGADVFAHFRDIQGNGFKTLQENQRVEFEVKQ 56


>gi|329894353|ref|ZP_08270223.1| putative Cold-shock protein [gamma proteobacterium IMCC3088]
 gi|328923149|gb|EGG30472.1| putative Cold-shock protein [gamma proteobacterium IMCC3088]
          Length = 134

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N  KG+GFI      +SGD++F+H  A+ + G  +L +G  V++     D
Sbjct: 72  GTVKWFNATKGFGFIV----CDSGDEIFVHFRALRNGGRRSLKDGLPVSFVITSGD 123


>gi|254294221|ref|YP_003060244.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
 gi|254042752|gb|ACT59547.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
          Length = 166

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW++  KG+GFI P+   + G +  LH S +   G+  + EG L++ D V+ +
Sbjct: 20 GRVKWFDSVKGFGFIIPDDGLD-GQEALLHISILREFGVEQVVEGMLISCDVVKRE 74



 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           IKW+N  KGYGF+   G  E   D+FLH   +  AGL     GQ V
Sbjct: 104 IKWFNRTKGYGFVHRVGEVE---DIFLHMVTLRKAGLEEAEPGQKV 146


>gi|227832058|ref|YP_002833765.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
 gi|262184088|ref|ZP_06043509.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
 gi|227453074|gb|ACP31827.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
          Length = 67

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N +KGYGFI  E   +   D+F+H + +   G   L + Q V+++ +  DA G+
Sbjct: 4  GTVKFFNAEKGYGFIEQE---DGSGDIFVHYTEIQGTGFRTLEDNQRVSFE-IGEDAKGQ 59

Query: 65 YSAENLKLV 73
            A N+++V
Sbjct: 60 -QATNVEVV 67


>gi|260775774|ref|ZP_05884670.1| cold shock protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608190|gb|EEX34359.1| cold shock protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 69

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI    S  +GDD+F+H  ++   G   L EG  V++
Sbjct: 7  GTVKWFNETKGFGFI----SQANGDDLFVHFRSILGDGFKKLVEGDKVSF 52


>gi|262089577|gb|ACY24676.1| hypothetical protein [uncultured organism]
          Length = 192

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K +N ++G+GFI    + + G D+F+H SA A  G     EG+ +T++ ++ D NGK
Sbjct: 8  GKLKKWNAERGFGFIV---ADDGGQDIFVHISAFARDGR-QPAEGEALTFE-IEPDRNGK 62

Query: 65 YSAENLKLV 73
           SA  ++ V
Sbjct: 63 RSAVRVRRV 71


>gi|170053777|ref|XP_001862831.1| RNA-binding protein lin-28 [Culex quinquefasciatus]
 gi|167874140|gb|EDS37523.1| RNA-binding protein lin-28 [Culex quinquefasciatus]
          Length = 181

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N  KG+GFITP+   + G DVF+H+S +   G  +L + + V ++    D
Sbjct: 26 GHCKWFNVIKGWGFITPD---DGGQDVFVHQSVLQMDGFRSLGQNEPVEFECKLTD 78


>gi|317406021|gb|EFV86296.1| cold shock-like protein [Achromobacter xylosoxidans C54]
          Length = 67

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI PE     G D+F H S +   G   L E Q V+Y   Q  A G 
Sbjct: 4  GIVKWFNDAKGFGFIMPE---NGGKDLFAHFSEIVGDGHKALVENQRVSYVTAQG-AKGP 59

Query: 65 YSAE 68
          ++ +
Sbjct: 60 HATQ 63


>gi|297200512|ref|ZP_06917909.1| cold shock protein B [Streptomyces sviceus ATCC 29083]
 gi|197709638|gb|EDY53672.1| cold shock protein B [Streptomyces sviceus ATCC 29083]
          Length = 127

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVETLKPGQRVEFGVV 51


>gi|296394984|ref|YP_003659868.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rotundus DSM 44985]
 gi|296182131|gb|ADG99037.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
          44985]
          Length = 77

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 5/52 (9%)

Query: 5  GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G+++W++P+KG+GFI P +GS E    VF+  +A+  +G   L E Q V ++
Sbjct: 4  GTVQWFDPEKGFGFIAPDDGSAE----VFVRYTAIEGSGFRKLVENQKVEFE 51


>gi|254498496|ref|ZP_05111222.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
 gi|254352272|gb|EET11081.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
          Length = 68

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI       SG D F+H SA+ S G   L EG  V +   +      
Sbjct: 7  GKVKWFNEGKGFGFI-----ESSGKDYFVHFSAIQSNGFKTLPEGAKVLFKMSKGQKG-- 59

Query: 65 YSAENLKLV 73
            AE ++L+
Sbjct: 60 LQAEEVELI 68


>gi|134295036|ref|YP_001118771.1| cold-shock DNA-binding protein family protein [Burkholderia
          vietnamiensis G4]
 gi|134138193|gb|ABO53936.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
          G4]
          Length = 67

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V+++ V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMEGFKTLKENQRVSFE-VKVGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|239832152|ref|ZP_04680481.1| Cold shock-like protein cspG [Ochrobactrum intermedium LMG 3301]
 gi|239824419|gb|EEQ95987.1| Cold shock-like protein cspG [Ochrobactrum intermedium LMG 3301]
          Length = 233

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   G+  L  GQ+V   + + D 
Sbjct: 158 LERVIVKWFNRTKGFGFLTRGEGTE---DIFIHMETLRRFGMMELRPGQVVLIRFGEGD- 213

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 214 KGLMAAE 220



 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G IKW++  KGYGFI P+      +D+ LH +++   G     EG  +  +  Q +
Sbjct: 68  GHIKWFDVAKGYGFIVPD--QPGLNDILLHVTSLRRDGFQTALEGARIVCEVRQGE 121


>gi|297624311|ref|YP_003705745.1| cold-shock DNA-binding domain-containing protein [Truepera
          radiovictrix DSM 17093]
 gi|297165491|gb|ADI15202.1| cold-shock DNA-binding domain protein [Truepera radiovictrix DSM
          17093]
          Length = 79

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++ +KG+GFI  +   + G DVF H SA+  +G  +L EG  V ++  Q
Sbjct: 4  GRVKWFSNEKGFGFIEQD---DGGADVFCHFSAITGSGYRSLNEGDEVEFEVEQ 54


>gi|146312143|ref|YP_001177217.1| cold-shock DNA-binding protein family protein [Enterobacter sp.
          638]
 gi|145319019|gb|ABP61166.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
          Length = 72

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG +KWY  DKG+GFI+P    + G D+ +H S +       L EGQ V Y
Sbjct: 6  RGLVKWYKEDKGFGFISP---LDGGKDISVHVSNLKGDDCQTLFEGQKVEY 53


>gi|33152437|ref|NP_873790.1| cold shock-like protein CspD [Haemophilus ducreyi 35000HP]
 gi|33148660|gb|AAP96179.1| cold shock-like protein CspD [Haemophilus ducreyi 35000HP]
          Length = 68

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +H G +KW+N  KG+GFIT +  T  G D+F H S +   G  +L  GQ V ++ V N+
Sbjct: 1  MHIGIVKWFNNVKGFGFITCD--TVEG-DIFAHFSEIKQDGYRSLKVGQKVQFELVTNE 56


>gi|293393437|ref|ZP_06637748.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
 gi|291424038|gb|EFE97256.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
          Length = 75

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +
Sbjct: 12 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEF 58


>gi|323452553|gb|EGB08427.1| hypothetical protein AURANDRAFT_16921 [Aureococcus
          anophagefferens]
          Length = 70

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          +N  KGYGFITP+     G DVF+H++ + + G  +L EG+ V ++ ++ D NG+  A
Sbjct: 1  FNTVKGYGFITPD---NGGGDVFVHQTQIYARGFRSLAEGENVEFE-IEMDQNGRERA 54


>gi|146283892|ref|YP_001174045.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          stutzeri A1501]
 gi|145572097|gb|ABP81203.1| cold-shock DNA-binding domain protein [Pseudomonas stutzeri
          A1501]
          Length = 235

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  RG++K +N DKG+GFI PE   + G+++F+H SAV   G      G  V +     D
Sbjct: 1  MERRGTLKSWNDDKGFGFIRPE---QGGEELFVHISAV--HGERRPLVGGRVLF-VAGRD 54

Query: 61 ANGKYSAENLKL 72
          A G+  AE+++L
Sbjct: 55 AQGRLRAEHVRL 66


>gi|296134718|ref|YP_003641960.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12]
 gi|294338681|emb|CAZ87012.1| Cold shock protein [Thiomonas sp. 3As]
 gi|295794840|gb|ADG29630.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12]
          Length = 69

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++KW+N  KG+GFI  +G    GD D+F+H S +   G   L E Q V ++  Q
Sbjct: 3  MQTGAVKWFNESKGFGFIAQDG----GDADLFVHFSEIQGNGFKTLAENQRVQFEVKQ 56


>gi|192360401|ref|YP_001982239.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107]
 gi|190686566|gb|ACE84244.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107]
          Length = 71

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  +GYGFIT     E  +D+F+H   + + G  +L EGQ V +
Sbjct: 7  GTVKWFNNVRGYGFIT---RGEGSEDIFVHYRNIRAEGYRSLAEGQSVEF 53


>gi|119476408|ref|ZP_01616759.1| cold-shock domain family protein [marine gamma proteobacterium
          HTCC2143]
 gi|119450272|gb|EAW31507.1| cold-shock domain family protein [marine gamma proteobacterium
          HTCC2143]
          Length = 69

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+IKW+N  KG+GFI    +   G D+F+H  ++   G   L EGQ V +  V+  A G 
Sbjct: 7  GTIKWFNNAKGFGFI----AQTEGADIFVHFRSIRGEGYKTLDEGQEVEFTVVEG-AKGL 61

Query: 65 YSAENLKL 72
           + +  KL
Sbjct: 62 QAEDVCKL 69


>gi|3821911|gb|AAC69697.1| major cold shock protein [Lactococcus lactis subsp. lactis]
          Length = 50

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 4/42 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          KG+GFIT    TE G+DVF H SA+ + G   L EGQ VT+D
Sbjct: 1  KGFGFIT----TEEGNDVFAHFSAIQTDGFKTLDEGQKVTFD 38


>gi|49474233|ref|YP_032275.1| cold shock protein [Bartonella quintana str. Toulouse]
 gi|49239737|emb|CAF26119.1| Cold shock protein [Bartonella quintana str. Toulouse]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N DKG+GF++    TE   D+F+H   +   GL  L  GQ+V   +
Sbjct: 117 LERAIVKWFNRDKGFGFLSRGQGTE---DIFVHMETLRRFGLAELRSGQVVLVRF 168



 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
          G IKW++  KGYGFI P+    +  D+ LH + +   G     EG
Sbjct: 28 GVIKWFDGSKGYGFIIPD--LPNFPDILLHVTVMRRDGFQTALEG 70


>gi|239981450|ref|ZP_04703974.1| putative cold shock protein [Streptomyces albus J1074]
 gi|291453301|ref|ZP_06592691.1| cold shock protein [Streptomyces albus J1074]
 gi|291356250|gb|EFE83152.1| cold shock protein [Streptomyces albus J1074]
          Length = 127

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVEALKPGQRVEFGVV 51


>gi|119503291|ref|ZP_01625375.1| putative Cold-shock protein [marine gamma proteobacterium
          HTCC2080]
 gi|119460937|gb|EAW42028.1| putative Cold-shock protein [marine gamma proteobacterium
          HTCC2080]
          Length = 70

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KG+GFIT    T+  +D+F+H  A+   G  +L EG  V +   + D
Sbjct: 7  GVVKWFNNAKGFGFIT---MTDREEDIFVHFRAIQGDGYRSLNEGDAVEFTLAEGD 59


>gi|331699393|ref|YP_004335632.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326954082|gb|AEA27779.1| cold-shock DNA-binding domain protein [Pseudonocardia
          dioxanivorans CB1190]
          Length = 156

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ DKG+GF+  +G    G+DV++ +SA+ + G+ +L  GQ V +      A G+
Sbjct: 32 GRVKWYDADKGFGFLAQDG----GEDVYVRKSALPT-GVESLKSGQRVEFGM----AEGR 82

Query: 65 YSAENLKL 72
             + L++
Sbjct: 83 RGPQALQV 90


>gi|302560009|ref|ZP_07312351.1| cold-shock domain family protein [Streptomyces griseoflavus
          Tu4000]
 gi|302477627|gb|EFL40720.1| cold-shock domain family protein [Streptomyces griseoflavus
          Tu4000]
          Length = 127

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVEALKPGQRVEFGVV 51


>gi|189347308|ref|YP_001943837.1| cold-shock DNA-binding domain protein [Chlorobium limicola DSM
          245]
 gi|189341455|gb|ACD90858.1| cold-shock DNA-binding domain protein [Chlorobium limicola DSM
          245]
          Length = 85

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + R  +KW++  KGYGFI  P G    G+DVF+H SA+ S   F +   Q    ++V   
Sbjct: 1  MERSKVKWFDGKKGYGFIVNPNG----GEDVFVHFSAIVSEQTFKVL-NQDADVEFVLEK 55

Query: 61 ANGKYSAENLK 71
              Y A+N++
Sbjct: 56 TQKGYQAKNVR 66


>gi|317508884|ref|ZP_07966523.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
 gi|316252845|gb|EFV12276.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
          Length = 77

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 5/52 (9%)

Query: 5  GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G+++W++P+KG+GFI P +GS E    VF+  +A+   G   L E Q V ++
Sbjct: 4  GTVQWFDPEKGFGFIAPDDGSAE----VFVRYTAIEGRGFRKLVESQKVEFE 51


>gi|296535726|ref|ZP_06897893.1| cold-shock DNA-binding domain protein [Roseomonas cervicalis ATCC
           49957]
 gi|296263939|gb|EFH10397.1| cold-shock DNA-binding domain protein [Roseomonas cervicalis ATCC
           49957]
          Length = 270

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G++KW++  +G+GF+TP+   + G DVFLH S +  AG  ++ +G+ ++ +  Q
Sbjct: 208 GTVKWFDQVRGFGFVTPD---DGGADVFLHSSVLQRAGKQDVQQGEKLSLEVRQ 258



 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43
          +KWYN  KG+GF+        G DVF H SA+  AG+
Sbjct: 18 VKWYNGRKGFGFVL----GPDGQDVFFHASALTEAGI 50


>gi|269139514|ref|YP_003296215.1| cold shock-like protein [Edwardsiella tarda EIB202]
 gi|267985175|gb|ACY85004.1| cold shock-like protein [Edwardsiella tarda EIB202]
 gi|304559403|gb|ADM42067.1| Cold shock protein CspI [Edwardsiella tarda FL6-60]
          Length = 69

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KWY+P  G G I+P    + GDD++++R+ +ASA    L EGQ V +
Sbjct: 6  GFVKWYDPSAGLGVISP---LDGGDDLYVNRTGIASARNKLLREGQRVEF 52


>gi|126667266|ref|ZP_01738239.1| Cold shock protein [Marinobacter sp. ELB17]
 gi|126628211|gb|EAZ98835.1| Cold shock protein [Marinobacter sp. ELB17]
          Length = 77

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KGYGFI  +G     DD+F H SA+   G   L  GQ V+++
Sbjct: 4  GKVKWFNNAKGYGFIIEDGYN---DDLFAHFSAIQMDGYKTLKAGQAVSFE 51


>gi|312078159|ref|XP_003141617.1| cold-shock DNA-binding domain-containing protein [Loa loa]
 gi|307763216|gb|EFO22450.1| cold-shock DNA-binding domain-containing protein [Loa loa]
          Length = 199

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 8/55 (14%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHR-----SAVASAGLFNLTEGQLVTY 54
          G+ KW+N  KGYGFITP+   + GDDVF+H+     S +   G  +L  G+ V +
Sbjct: 11 GTCKWFNVLKGYGFITPD---QGGDDVFVHQASEIFSELNMDGFRSLDAGERVRF 62


>gi|3831558|gb|AAC70000.1| major cold shock protein [Pediococcus pentosaceus]
          Length = 50

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 4/47 (8%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          KG+GFIT     E G DVF+H SA+ S G   L EGQ V++D  ++D
Sbjct: 1  KGFGFIT----REDGSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESD 43


>gi|3821921|gb|AAC69702.1| major cold shock protein [Lactobacillus acidophilus]
          Length = 50

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 4/47 (8%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          KG+GFIT     E G DVF+H SA+   G  +L EGQ V+YD  Q+D
Sbjct: 1  KGFGFIT----GEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSD 43


>gi|297588480|ref|ZP_06947123.1| CspA family cold shock transcriptional regulator [Finegoldia
          magna ATCC 53516]
 gi|297573853|gb|EFH92574.1| CspA family cold shock transcriptional regulator [Finegoldia
          magna ATCC 53516]
          Length = 67

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYD 55
          +G++KW+N  KG+GFI    STE   DVF+H +A+   G +  L E Q V +D
Sbjct: 3  KGTVKWFNATKGFGFI----STEDHGDVFVHYTALEDNGEYRKLEENQEVEFD 51


>gi|239930549|ref|ZP_04687502.1| putative cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291438911|ref|ZP_06578301.1| cold shock protein B [Streptomyces ghanaensis ATCC 14672]
 gi|291341806|gb|EFE68762.1| cold shock protein B [Streptomyces ghanaensis ATCC 14672]
          Length = 127

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVEALKPGQRVEFGVV 51


>gi|270261474|ref|ZP_06189747.1| hypothetical protein SOD_a07060 [Serratia odorifera 4Rx13]
 gi|270044958|gb|EFA18049.1| hypothetical protein SOD_a07060 [Serratia odorifera 4Rx13]
          Length = 70

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW++  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +  +++ A G
Sbjct: 7  GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQRVEF-TIESGAKG 61


>gi|320009321|gb|ADW04171.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
          Length = 127

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGADVFVH-SSVLPAGVEALKPGQRVEFGVV 51


>gi|29830450|ref|NP_825084.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29607562|dbj|BAC71619.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 127

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVEALKPGQRVEFGVV 51


>gi|301321057|gb|ADK69700.1| cold-shock DNA-binding domain protein [Mycoplasma mycoides subsp.
          mycoides SC str. Gladysdale]
          Length = 69

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G +KW+N +KG+GFIT +   +   DVF++ S +   G   L +GQ VTY+
Sbjct: 1  MNTGIVKWFNDEKGFGFITNDSDNK---DVFVYYSNINVNGYKTLEQGQKVTYE 51


>gi|182436969|ref|YP_001824688.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326777583|ref|ZP_08236848.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178465485|dbj|BAG20005.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326657916|gb|EGE42762.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 127

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVEALKPGQRVEFGVV 51


>gi|157370303|ref|YP_001478292.1| cold-shock DNA-binding domain-containing protein [Serratia
          proteamaculans 568]
 gi|157322067|gb|ABV41164.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
          Length = 70

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +
Sbjct: 7  GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQRVEF 53


>gi|33591645|ref|NP_879289.1| cold shock protein [Bordetella pertussis Tohama I]
 gi|33571288|emb|CAE44757.1| cold shock protein [Bordetella pertussis Tohama I]
 gi|332381065|gb|AEE65912.1| cold shock protein [Bordetella pertussis CS]
          Length = 67

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KW+N +KG+GFI PE     G D+F H S +   G   L E Q V+Y
Sbjct: 1  MQTGIVKWFNDEKGFGFIMPE---NGGPDLFAHYSEIQGEGHKVLVEQQRVSY 50


>gi|153009253|ref|YP_001370468.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561141|gb|ABS14639.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
           anthropi ATCC 49188]
          Length = 193

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   G+  L  GQ+V   + + D 
Sbjct: 118 LERVIVKWFNRTKGFGFLTRGEGTE---DIFIHMETLRRFGMMELRPGQVVLIRFGEGD- 173

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 174 KGLMAAE 180



 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G IKW++  KGYGFI P+      +D+ LH +++   G     EG  +  +    D
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLNDILLHVTSLRRDGFQTALEGARIVCEVRNGD 81


>gi|294636900|ref|ZP_06715228.1| cold-shock DNA-binding domain protein [Edwardsiella tarda ATCC
          23685]
 gi|291089891|gb|EFE22452.1| cold-shock DNA-binding domain protein [Edwardsiella tarda ATCC
          23685]
          Length = 69

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KWY+P  G G I+P    + GDD+++ R+A+AS+    L EGQ V +
Sbjct: 6  GFVKWYDPSAGLGVISP---LDGGDDLYVSRTAIASSRNKLLREGQRVEF 52


>gi|195020347|ref|XP_001985176.1| GH16919 [Drosophila grimshawi]
 gi|193898658|gb|EDV97524.1| GH16919 [Drosophila grimshawi]
          Length = 345

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G+LV +D V
Sbjct: 50  GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVV 103


>gi|308805262|ref|XP_003079943.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
 gi|116058400|emb|CAL53589.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
          Length = 125

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 4/48 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
           RG +KW+N  KG+G+ITP+   +   DVF+H+SA+   G F  T+G+
Sbjct: 11 RRGKVKWFNCTKGFGYITPD---DGEPDVFVHQSALKMEG-FRRTDGR 54


>gi|2970679|gb|AAC06034.1| Y box protein [Drosophila silvestris]
          Length = 342

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G+LV +D V
Sbjct: 50  GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVV 103


>gi|290959486|ref|YP_003490668.1| cold shock protein B [Streptomyces scabiei 87.22]
 gi|260649012|emb|CBG72126.1| putative cold shock protein B [Streptomyces scabiei 87.22]
          Length = 127

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVDTLKPGQKVEFGVV 51


>gi|83649125|ref|YP_437560.1| cold shock protein [Hahella chejuensis KCTC 2396]
 gi|83637168|gb|ABC33135.1| Cold shock protein [Hahella chejuensis KCTC 2396]
          Length = 71

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 8/65 (12%)

Query: 5  GSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N  KGYGFI + EG      DVF+H SA+   G   L  G  V Y  VQ+ + G
Sbjct: 9  GMVKWFNNAKGYGFIESAEG------DVFVHYSAIRKDGYKTLRAGSHVEYQ-VQHSSKG 61

Query: 64 KYSAE 68
           ++ E
Sbjct: 62 LFAQE 66


>gi|300173064|ref|YP_003772230.1| cold shock protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299887443|emb|CBL91411.1| Cold shock protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 74

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K +  ++GYG+ITP+   + G+DVF+H + +   G  +L +G+ V Y  VQ   N  
Sbjct: 4  GIVKIWQKERGYGYITPD---DGGEDVFVHFNGIDMIGFKSLIQGEKVNYVLVQGFKN-- 58

Query: 65 YSAENLKLVPKSS 77
          Y A  +  + K +
Sbjct: 59 YQAAQVSPIMKKA 71


>gi|325287735|ref|YP_004263525.1| cold-shock DNA-binding domain-containing protein [Cellulophaga
          lytica DSM 7489]
 gi|324323189|gb|ADY30654.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM
          7489]
          Length = 63

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 7/55 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++K++N +KG+GFIT EG   SG D+F+H S +       + EG  V Y+  +
Sbjct: 3  KGTVKFFNDEKGFGFITEEG---SGKDIFVHISGLVD----EIREGDEVEYEVTE 50


>gi|242278634|ref|YP_002990763.1| cold-shock DNA-binding domain protein [Desulfovibrio salexigens
          DSM 2638]
 gi|242121528|gb|ACS79224.1| cold-shock DNA-binding domain protein [Desulfovibrio salexigens
          DSM 2638]
          Length = 69

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G + W+N  KG+GFI  E    +G D+++H S V   G   L  G+ V ++ +  D
Sbjct: 1  MSLKGVVSWFNDIKGFGFIVDE----AGRDIYVHYSEVLRDGFKTLNVGEKVVFEVIDED 56

Query: 61 ANGKYSAENL 70
             K +A  +
Sbjct: 57 TAPKATAVRI 66


>gi|320007562|gb|ADW02412.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
          Length = 70

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G+++ ++ +KGYG+I P   +  G ++ +H SA+  A    L  GQ V++D VQ 
Sbjct: 4  GTVQVFSAEKGYGYIRP---STGGPEIIVHFSAIVEACPVGLVAGQTVSFDIVQR 55


>gi|16273340|ref|NP_439584.1| cold shock-like protein [Haemophilus influenzae Rd KW20]
 gi|68250036|ref|YP_249148.1| cold shock-like protein CspD [Haemophilus influenzae 86-028NP]
 gi|145630737|ref|ZP_01786515.1| cold shock-like protein CspD [Haemophilus influenzae R3021]
 gi|145632798|ref|ZP_01788531.1| cold shock-like protein CspD [Haemophilus influenzae 3655]
 gi|145634990|ref|ZP_01790697.1| cold shock-like protein CspD [Haemophilus influenzae PittAA]
 gi|145636144|ref|ZP_01791814.1| cold shock-like protein CspD [Haemophilus influenzae PittHH]
 gi|145638951|ref|ZP_01794559.1| cold shock-like protein CspD [Haemophilus influenzae PittII]
 gi|145641592|ref|ZP_01797169.1| cold shock-like protein CspD [Haemophilus influenzae R3021]
 gi|148825975|ref|YP_001290728.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          PittEE]
 gi|148826935|ref|YP_001291688.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          PittGG]
 gi|229844090|ref|ZP_04464231.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          6P18H1]
 gi|229846710|ref|ZP_04466817.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          7P49H1]
 gi|260580732|ref|ZP_05848558.1| cold shock domain-containing protein CspD [Haemophilus influenzae
          RdAW]
 gi|260583054|ref|ZP_05850836.1| cold shock domain-containing protein CspD [Haemophilus influenzae
          NT127]
 gi|1169113|sp|P46449|CSPD_HAEIN RecName: Full=Cold shock-like protein CspD
 gi|1574273|gb|AAC23082.1| cold shock-like protein (cspD) [Haemophilus influenzae Rd KW20]
 gi|68058235|gb|AAX88488.1| cold shock-like protein CspD [Haemophilus influenzae 86-028NP]
 gi|144983619|gb|EDJ91079.1| cold shock-like protein CspD [Haemophilus influenzae R3021]
 gi|144986454|gb|EDJ93020.1| cold shock-like protein CspD [Haemophilus influenzae 3655]
 gi|145267856|gb|EDK07853.1| cold shock-like protein CspD [Haemophilus influenzae PittAA]
 gi|145270666|gb|EDK10599.1| cold shock-like protein CspD [Haemophilus influenzae PittHH]
 gi|145271923|gb|EDK11832.1| cold shock-like protein CspD [Haemophilus influenzae PittII]
 gi|145273639|gb|EDK13508.1| cold shock-like protein CspD [Haemophilus influenzae 22.4-21]
 gi|148716135|gb|ABQ98345.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          PittEE]
 gi|148718177|gb|ABQ99304.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          PittGG]
 gi|229810199|gb|EEP45918.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          7P49H1]
 gi|229813084|gb|EEP48772.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          6P18H1]
 gi|260092549|gb|EEW76486.1| cold shock domain-containing protein CspD [Haemophilus influenzae
          RdAW]
 gi|260093905|gb|EEW77811.1| cold shock domain-containing protein CspD [Haemophilus influenzae
          NT127]
 gi|301170221|emb|CBW29825.1| cold shock protein homolog [Haemophilus influenzae 10810]
 gi|309750920|gb|ADO80904.1| Cold shock protein CspD [Haemophilus influenzae R2866]
 gi|309973115|gb|ADO96316.1| Cold shock protein CspD [Haemophilus influenzae R2846]
          Length = 72

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI+ EG      D+F H S +   G  +L  GQ V ++ + +D  G 
Sbjct: 4  GIVKWFNNAKGFGFISAEGVDA---DIFAHYSVIEMDGYRSLKAGQKVQFEVLHSD-KGS 59

Query: 65 YSAENLKLVP 74
          ++    K++P
Sbjct: 60 HAT---KIIP 66


>gi|1402757|gb|AAC80247.1| major cold-shock protein [Listeria grayi]
          Length = 45

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +KG+GFI    S E G DVF+H SA+   G   L EGQ VT+D  ++D
Sbjct: 1  EKGFGFI----SREDGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESD 44


>gi|312883792|ref|ZP_07743511.1| cold shock protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368541|gb|EFP96074.1| cold shock protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 69

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI+ E S    DD+F+H   +   G   L EG  V++
Sbjct: 7  GTVKWFNETKGFGFISQENS----DDLFVHFRNILGDGFKKLVEGDKVSF 52


>gi|331703045|ref|YP_004399732.1| Cold shock protein [Mycoplasma mycoides subsp. capri LC str.
          95010]
 gi|256383681|gb|ACU78251.1| cold-shock DNA-binding domain, putative [Mycoplasma mycoides
          subsp. capri str. GM12]
 gi|256384512|gb|ACU79081.1| cold-shock DNA-binding domain, putative [Mycoplasma mycoides
          subsp. capri str. GM12]
 gi|296456011|gb|ADH22246.1| cold-shock DNA-binding domain, putative [synthetic Mycoplasma
          mycoides JCVI-syn1.0]
 gi|328801600|emb|CBW53753.1| Cold shock protein [Mycoplasma mycoides subsp. capri LC str.
          95010]
          Length = 69

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G +KW+N +KG+GFIT +   +   DVF++ S +   G   L +GQ VTY+
Sbjct: 1  MNTGIVKWFNDEKGFGFITNDSDNK---DVFVYFSNINVNGYKTLEQGQKVTYE 51


>gi|89092942|ref|ZP_01165894.1| cold shock domain protein CspD [Oceanospirillum sp. MED92]
 gi|89082967|gb|EAR62187.1| cold shock domain protein CspD [Oceanospirillum sp. MED92]
          Length = 70

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G +KW+N  KGYGFI    S E  +D+F H SA+   G  +L  GQ V ++
Sbjct: 1  MQTGKVKWFNNSKGYGFIL---SDEHAEDLFAHYSAIDVDGYKSLKAGQAVEFE 51


>gi|319408547|emb|CBI82200.1| cold shock protein [Bartonella schoenbuchensis R1]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW++ DKG+GF++    TE   D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 117 LERAIVKWFDRDKGFGFLSRGQGTE---DIFIHMETLRRFGLAELRSGQVVIVRFGKGE- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMTAE 179


>gi|223982759|ref|ZP_03632987.1| hypothetical protein HOLDEFILI_00261 [Holdemania filiformis DSM
          12042]
 gi|223965259|gb|EEF69543.1| hypothetical protein HOLDEFILI_00261 [Holdemania filiformis DSM
          12042]
          Length = 65

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K +N +KGYGFI        G DVF H S +   G   + E   V +D ++ D   
Sbjct: 2  QGKVKMFNKEKGYGFI----KLSDGRDVFFHYSQLVMDGFKTIEENAEVEFDLIEGDRG- 56

Query: 64 KYSAENLK 71
           Y A N+K
Sbjct: 57 -YQAHNVK 63


>gi|163760322|ref|ZP_02167405.1| putative cold shock protein [Hoeflea phototrophica DFL-43]
 gi|162282721|gb|EDQ33009.1| putative cold shock protein [Hoeflea phototrophica DFL-43]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V   +  N  
Sbjct: 116 LERAIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRYGLAELRPGQVVLVRF-GNGE 171

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 172 KGLMAAE 178



 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G IKW++  KG+GFI P+   E   DV LH + +   G   + EG  +  + +Q    G
Sbjct: 27 GVIKWFDVAKGFGFIIPDNGME---DVLLHVTCLRRDGYQTVLEGTRIVCE-IQKRERG 81


>gi|150024384|ref|YP_001295210.1| cold shock protein [Flavobacterium psychrophilum JIP02/86]
 gi|149770925|emb|CAL42390.1| Probable cold shock protein [Flavobacterium psychrophilum
          JIP02/86]
          Length = 66

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 6/51 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++K++N  KGYGFIT +   E+G D+F+H S + +     L EG  V+Y+
Sbjct: 4  GTVKFFNESKGYGFITDD---ETGKDIFVHASGIKAE---ELREGDKVSYE 48


>gi|325293188|ref|YP_004279052.1| cold shock protein [Agrobacterium sp. H13-3]
 gi|325061041|gb|ADY64732.1| cold shock protein [Agrobacterium sp. H13-3]
          Length = 192

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   GL  L  GQ+V   +   D 
Sbjct: 117 LERAIVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRFGDGD- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMAAE 179



 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW++  KG+GFI P+   +   DV LH S +   G   + EG  +     + D
Sbjct: 28 GAVKWFDVAKGFGFIVPDNGMQ---DVLLHVSCLRRDGYQTILEGTRIVALIQRRD 80


>gi|294084974|ref|YP_003551734.1| cold shock protein [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664549|gb|ADE39650.1| cold shock protein [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 181

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G + WYN  KGYGF+  + +     ++FLHRS +   GL  L  G  V+    +N+
Sbjct: 31 IKEGELVWYNERKGYGFVKIDDT-----EIFLHRSTLDRFGLIRLLTGDRVSVSLTENE 84



 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYD 55
           R  +K++N  +GYGF+T E      DDVF+H   ++  G  +L +GQ  LV  D
Sbjct: 115 RAVVKFFNDVRGYGFVTAENID---DDVFVHSRVLSDCGFHSLLQGQKLLVKVD 165


>gi|328884184|emb|CCA57423.1| Cold shock protein CspC [Streptomyces venezuelae ATCC 10712]
          Length = 127

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVDALKPGQRVEFGVV 51


>gi|312113552|ref|YP_004011148.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311218681|gb|ADP70049.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 191

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            R  +KW+N  KG+GF+T    TE   D+F+H   +   G   L  GQ+V   Y   D  
Sbjct: 117 QRAMVKWFNRLKGFGFLTRGAGTE---DIFVHMETLRRFGFAELRPGQIVQVRYGHGD-K 172

Query: 63  GKYSAE 68
           G  +AE
Sbjct: 173 GLMAAE 178



 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G IKW++  KG+GFI P+G      D+ +H + +   G     EG  +  + ++ D
Sbjct: 28 GHIKWFDVSKGFGFIVPDGGLP---DILIHVTVLRRDGYQTAYEGARIVCEVLRRD 80


>gi|253990328|ref|YP_003041684.1| cold shock-like protein [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253781778|emb|CAQ84941.1| cold shock-like protein cspd (csp-d) [Photorhabdus asymbiotica]
          Length = 73

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI P      G+D+F H S +   G   L  GQ V +   Q
Sbjct: 4  GTVKWFNNAKGFGFICP---ASGGEDIFAHYSTIQMDGYRTLKAGQKVHFSVHQ 54


>gi|239943237|ref|ZP_04695174.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|239989696|ref|ZP_04710360.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
 gi|291446710|ref|ZP_06586100.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|291349657|gb|EFE76561.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
          Length = 127

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVDALKPGQRVEFGVV 51


>gi|115350919|ref|YP_772758.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria AMMD]
 gi|170698521|ref|ZP_02889592.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171315542|ref|ZP_02904778.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|172059932|ref|YP_001807584.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|115280907|gb|ABI86424.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
          AMMD]
 gi|170136605|gb|EDT04862.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171099379|gb|EDT44117.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|171992449|gb|ACB63368.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MC40-6]
          Length = 67

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V+++ V+    GK
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMDGFKTLKENQRVSFE-VKLGPKGK 59

Query: 65 YSA 67
           +A
Sbjct: 60 QAA 62


>gi|319898944|ref|YP_004159037.1| cold shock protein [Bartonella clarridgeiae 73]
 gi|319402908|emb|CBI76459.1| cold shock protein [Bartonella clarridgeiae 73]
          Length = 193

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N +KG+GF++    TE   D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 119 LERAIVKWFNREKGFGFLSRGQGTE---DIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 174

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 175 KGLMTAE 181



 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKW++  KGYGFI P+ S     D+ LH + +   G     EG  V     Q +   K
Sbjct: 30 GVIKWFDGSKGYGFIVPDFSDLP--DILLHVTVMRRDGFQTALEGAKVVCVVKQTERGLK 87


>gi|296138557|ref|YP_003645800.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
          DSM 20162]
 gi|296026691|gb|ADG77461.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
          DSM 20162]
          Length = 139

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KWY+ +KG+GF++ EG    G+DV++  SA+ S G   L +GQ V +
Sbjct: 4  GKVKWYDAEKGFGFLSQEG----GEDVYVRSSALPS-GTDELKQGQRVEF 48


>gi|268590196|ref|ZP_06124417.1| cold shock domain protein CspD [Providencia rettgeri DSM 1131]
 gi|291314477|gb|EFE54930.1| cold shock domain protein CspD [Providencia rettgeri DSM 1131]
          Length = 81

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KW+N  KG+GFI P    + G+D+F H S +   G   L  GQ V +
Sbjct: 1  METGIVKWFNNAKGFGFICP---ADGGEDIFAHYSCIQMDGYRTLKAGQKVQF 50


>gi|195128621|ref|XP_002008760.1| GI13673 [Drosophila mojavensis]
 gi|193920369|gb|EDW19236.1| GI13673 [Drosophila mojavensis]
          Length = 335

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G+LV +D V
Sbjct: 48  GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVV 101


>gi|195379482|ref|XP_002048507.1| GJ14010 [Drosophila virilis]
 gi|194155665|gb|EDW70849.1| GJ14010 [Drosophila virilis]
          Length = 340

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G+LV +D V
Sbjct: 48  GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVV 101


>gi|119470168|ref|ZP_01612934.1| nucleic acid-binding domain, cold-shock RNA chaperone
          [Alteromonadales bacterium TW-7]
 gi|119446589|gb|EAW27863.1| nucleic acid-binding domain, cold-shock RNA chaperone
          [Alteromonadales bacterium TW-7]
          Length = 72

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI  +G     +D+F H S +   G   L  GQ VT++  Q
Sbjct: 4  GKVKWFNNAKGFGFIVEDGCE---NDIFAHYSTIVMDGYKTLKAGQDVTFELEQ 54


>gi|294791478|ref|ZP_06756635.1| cold-shock domain family protein [Scardovia inopinata F0304]
 gi|294457949|gb|EFG26303.1| cold-shock domain family protein [Scardovia inopinata F0304]
          Length = 129

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 5/55 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G I+W++  KGYGFIT    ++ G+DVFL ++A+  AG+  L +G  V +  + +
Sbjct: 4  GKIRWFDAKKGYGFIT----SDDGEDVFLPKTAL-PAGISKLRKGAKVEFSRIDS 53


>gi|312193994|ref|YP_004014055.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
 gi|311225330|gb|ADP78185.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
          Length = 131

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KWY+ DKG+GF+    S + G DVF+H++A+  AG+  L  G  V +
Sbjct: 4  GKVKWYDVDKGFGFL----SRDDGGDVFVHKAAL-PAGVEKLRAGDRVEF 48


>gi|332703395|ref|ZP_08423483.1| cold-shock DNA-binding domain protein [Desulfovibrio africanus
          str. Walvis Bay]
 gi|332553544|gb|EGJ50588.1| cold-shock DNA-binding domain protein [Desulfovibrio africanus
          str. Walvis Bay]
          Length = 99

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           RG + W++  +GYGFI      E+G+DVF+    +   G   L +G+ VT+  ++    
Sbjct: 22 RRGVVVWFHERRGYGFI----RDETGEDVFVSWPDILRPGFKTLAQGEQVTFT-LKPGEG 76

Query: 63 GKYSAENLKLVPKS 76
          G+ +AE + L P +
Sbjct: 77 GRKAAEVVPLQPSA 90


>gi|302535935|ref|ZP_07288277.1| cold shock protein [Streptomyces sp. C]
 gi|302444830|gb|EFL16646.1| cold shock protein [Streptomyces sp. C]
          Length = 127

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVDALKPGQRVEFGVV 51


>gi|163736548|ref|ZP_02143967.1| hypothetical protein RGBS107_15491 [Phaeobacter gallaeciensis
          BS107]
 gi|161390418|gb|EDQ14768.1| hypothetical protein RGBS107_15491 [Phaeobacter gallaeciensis
          BS107]
          Length = 178

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 10/78 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG---QLVTYDYVQND 60
          RG +KW++P KG+GF+    S E G D+ LH + + + G  ++ +G   +LVT+      
Sbjct: 12 RGLVKWFDPTKGFGFVV---SDEGGPDILLHVNVLRNFGQSSIADGAEVELVTH----RT 64

Query: 61 ANGKYSAENLKLVPKSSN 78
            G  + E L + P + +
Sbjct: 65 ERGVQAVEVLSITPPARD 82



 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G  E   DVFLH   +  +GL  L  G+ +    + +   G+ +
Sbjct: 108 VKWFDKGKGFGFANVFGRDE---DVFLHVEVLRQSGLSELQPGEALGMRVI-DGKRGRMA 163

Query: 67  AENL 70
            E L
Sbjct: 164 VEVL 167


>gi|149908141|ref|ZP_01896805.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
 gi|149808683|gb|EDM68616.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
          Length = 69

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K++N  KG+GFI      E+G DVF+H S++   G   LT+GQ V +   Q     +
Sbjct: 7  GKVKFFNEAKGFGFI----EQENGPDVFVHFSSILVDGFKVLTDGQKVEFTVGQGQKGPQ 62

Query: 65 YSAENLK 71
            AEN+K
Sbjct: 63 --AENVK 67


>gi|37525539|ref|NP_928883.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
          TTO1]
 gi|36784967|emb|CAE13885.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
          TTO1]
          Length = 73

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI P      G+D+F H S +   G   L  GQ V +
Sbjct: 4  GTVKWFNNAKGFGFICP---ASGGEDIFAHYSTIQMDGYRTLKAGQKVNF 50


>gi|326692723|ref|ZP_08229728.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc
          argentinum KCTC 3773]
          Length = 74

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 5/74 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K +  ++GYG+ITP+   E G DV++H + +   G  +L +G+ V+Y  VQ   +  
Sbjct: 4  GTVKIWQKERGYGYITPD---EGGADVYVHFNGIDMDGFKSLNQGERVSYVLVQGYKD-- 58

Query: 65 YSAENLKLVPKSSN 78
          Y A  ++ + K ++
Sbjct: 59 YQAAEVRPIMKKAS 72


>gi|88860126|ref|ZP_01134765.1| nucleic acid-binding domain, cold-shock RNA chaperone
          [Pseudoalteromonas tunicata D2]
 gi|88818120|gb|EAR27936.1| nucleic acid-binding domain, cold-shock RNA chaperone
          [Pseudoalteromonas tunicata D2]
          Length = 72

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFI  +G  E   D+F H S +   G   L  GQ VT++
Sbjct: 4  GKVKWFNNAKGFGFIVADGREE---DIFAHFSTIVMDGYKTLKAGQDVTFE 51


>gi|329764741|ref|ZP_08256336.1| cold-shock DNA-binding domain-containing protein [Candidatus
          Nitrosoarchaeum limnia SFB1]
 gi|329138791|gb|EGG43032.1| cold-shock DNA-binding domain-containing protein [Candidatus
          Nitrosoarchaeum limnia SFB1]
          Length = 63

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 8/57 (14%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++KW+N  KG+GFI      ESGDD+F+H+S V   G  N  EG  V ++  Q
Sbjct: 1  MEQGTVKWFNRTKGFGFI----ERESGDDLFVHKSDV--DGFIN--EGDKVEFEVGQ 49


>gi|307610887|emb|CBX00504.1| cold shock-like protein cspE [Legionella pneumophila 130b]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          RG +KW+N  KG+GFI       +G D F+H SA+   G  NL +G  V +   Q
Sbjct: 6  RGKVKWFNKAKGFGFI-----ESNGKDYFVHFSAIQGNGFKNLPDGARVLFKVGQ 55


>gi|260460741|ref|ZP_05808991.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033318|gb|EEW34579.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 198

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   G+  L  GQ+V   + + D 
Sbjct: 124 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRYGITELRPGQVVLVRFGRGD- 179

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 180 KGLMAAE 186



 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G+IKW++  KGYGFI P+       D+ LH + +   G     EG  V     Q +
Sbjct: 34 GAIKWFDVAKGYGFILPDDGISG--DILLHVTCLRRDGFQTALEGARVVCLVKQGE 87


>gi|240171972|ref|ZP_04750631.1| cold shock-like protein B CspB [Mycobacterium kansasii ATCC
          12478]
          Length = 134

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF+    S E G+DV++ RS+   AG+  L  GQ V +      A+G+
Sbjct: 4  GKVKWYDSEKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGI----ASGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|167855568|ref|ZP_02478329.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus
          parasuis 29755]
 gi|219870615|ref|YP_002474990.1| cold shock-like protein CspD [Haemophilus parasuis SH0165]
 gi|167853314|gb|EDS24567.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus
          parasuis 29755]
 gi|219690819|gb|ACL32042.1| cold shock-like protein CspD [Haemophilus parasuis SH0165]
          Length = 69

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT + S E   D+F H S +   G  +L  GQ V +++   D    
Sbjct: 4  GIVKWFNNAKGFGFITSD-SYEG--DIFAHFSVIEGEGYRSLKMGQKVHFEFTHGDKG-- 58

Query: 65 YSAENLKLVP 74
            A  +++VP
Sbjct: 59 --ASAVRIVP 66


>gi|1402759|gb|AAC80246.1| major cold-shock protein [Listeria innocua]
          Length = 45

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 4/43 (9%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +KG+GFI      E+GDDVF+H SA+   G  +L EGQ VT+D
Sbjct: 1  EKGFGFI----ERENGDDVFVHFSAIQGDGFKSLDEGQAVTFD 39


>gi|319404271|emb|CBI77864.1| cold shock protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 193

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N +KG+GF++    TE   D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 119 LERAIVKWFNREKGFGFLSRGQGTE---DIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 174

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 175 KGLMTAE 181



 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKW++  KGYGFI P+       D+ LH + +   G     EG  V     Q +   K
Sbjct: 30 GVIKWFDGSKGYGFIIPD--LPGLPDILLHVTVMRRDGFQTALEGAKVICVVKQTERGLK 87


>gi|281490767|ref|YP_003352747.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|281374536|gb|ADA64057.1| Cold-shock protein [Lactococcus lactis subsp. lactis KF147]
          Length = 66

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G+I W+N DKGYGFI  +       DVF +  ++         EGQ VT+D ++  +
Sbjct: 1  MNKGTINWFNADKGYGFIMADDRQ----DVFAYLLSIQGNDFKKYDEGQKVTFD-IKMTS 55

Query: 62 NGKYSA 67
           G+Y++
Sbjct: 56 RGRYAS 61


>gi|238784536|ref|ZP_04628544.1| Cold shock-like protein [Yersinia bercovieri ATCC 43970]
 gi|238714599|gb|EEQ06603.1| Cold shock-like protein [Yersinia bercovieri ATCC 43970]
          Length = 65

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  +GYGFI+P    + G DV++ ++A+A+    +L+EGQ V +
Sbjct: 2  GRVKWFNQSEGYGFISPH---DGGLDVYVSKTAIANTKNRSLSEGQDVEF 48


>gi|304393756|ref|ZP_07375684.1| cold shock protein [Ahrensia sp. R2A130]
 gi|303294763|gb|EFL89135.1| cold shock protein [Ahrensia sp. R2A130]
          Length = 216

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           R  +KW+N  KG+GF+T    TE   D+F+H   +   GL  L  GQ V   Y   D  G
Sbjct: 143 RTEVKWFNRTKGFGFLTQGEGTE---DIFIHMETLRRFGLTELRPGQHVMVRYGHGD-KG 198

Query: 64  KYSAE 68
             +AE
Sbjct: 199 LMAAE 203



 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G+IKW++  KG+GF+ P+   +   DV LH S +   G     EG  +  + V+ 
Sbjct: 52  GAIKWFDVSKGFGFVVPD---DDMPDVLLHVSCLRDDGFQTAHEGARIVCEVVRK 103


>gi|284033793|ref|YP_003383724.1| cold-shock DNA-binding domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283813086|gb|ADB34925.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM
          17836]
          Length = 127

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KWY+ +KG+GF+    S E G DV++ R+    AG+ NL  GQ V +  V+
Sbjct: 4  GKVKWYDSEKGFGFL----SKEEGGDVYV-RAEALPAGVTNLKPGQKVEFGVVE 52


>gi|294629991|ref|ZP_06708551.1| cold-shock domain family protein [Streptomyces sp. e14]
 gi|292833324|gb|EFF91673.1| cold-shock domain family protein [Streptomyces sp. e14]
          Length = 127

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVDALKPGQRVEFGVV 51


>gi|213966424|ref|ZP_03394602.1| cold-shock DNA-binding domain protein [Corynebacterium amycolatum
          SK46]
 gi|213950944|gb|EEB62348.1| cold-shock DNA-binding domain protein [Corynebacterium amycolatum
          SK46]
          Length = 143

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G ++WY+ D+G+GF+    S   G+DV++ ++ V   G+  L  GQ + YDY    A+G+
Sbjct: 4  GKVRWYDKDRGFGFV----SNPDGEDVYIGKN-VLPKGVEELVTGQRLEYDY----ADGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 PGPQALRI 62


>gi|77360666|ref|YP_340241.1| cold-shock RNA chaperone [Pseudoalteromonas haloplanktis TAC125]
 gi|76875577|emb|CAI86798.1| nucleic acid-binding domain, cold-shock RNA chaperone
          [Pseudoalteromonas haloplanktis TAC125]
          Length = 72

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI  +G     +D+F H S +   G   L  GQ VT++  Q
Sbjct: 4  GKVKWFNNAKGFGFIVEDGCE---NDIFAHYSTIVMDGYKTLKAGQDVTFELEQ 54


>gi|315126396|ref|YP_004068399.1| cold-shock RNA chaperone [Pseudoalteromonas sp. SM9913]
 gi|315014910|gb|ADT68248.1| cold-shock RNA chaperone [Pseudoalteromonas sp. SM9913]
          Length = 72

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI  +G     +D+F H S +   G   L  GQ VT++  Q
Sbjct: 4  GKVKWFNNAKGFGFIVEDGCE---NDIFAHYSTIVMDGYKTLKAGQDVTFELQQ 54


>gi|1402769|gb|AAC80251.1| major cold-shock protein [Proteus vulgaris]
          Length = 47

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 2/42 (4%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          DKG+GFITP+  ++  DDVF+H SA+ S    +L EGQ V++
Sbjct: 1  DKGFGFITPKDGSK--DDVFVHFSAIQSDSFKSLKEGQEVSF 40


>gi|13470456|ref|NP_102024.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|14021197|dbj|BAB47810.1| cold shock protein [Mesorhizobium loti MAFF303099]
          Length = 181

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   G+  L  GQ+V   + + D 
Sbjct: 107 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRYGITELRPGQVVLVRFGRGD- 162

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 163 KGLMAAE 169



 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G+IKW++  KGYGFI P+       D+ LH + +   G     EG  V     Q D
Sbjct: 17 GAIKWFDVAKGYGFILPDDGVSG--DILLHVTCLRRDGFQTALEGARVVCLVKQGD 70


>gi|319407276|emb|CBI80917.1| cold shock protein [Bartonella sp. 1-1C]
          Length = 191

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N +KG+GF++    TE   D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 117 LERAIVKWFNREKGFGFLSRGQGTE---DIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMTAE 179



 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKW++  KGYGFI P+    S  D+ LH + +   G     EG  V     Q +   K
Sbjct: 28 GVIKWFDGSKGYGFIIPD--LPSLPDILLHVTVMRRDGFQTALEGAKVICVVKQTERGLK 85


>gi|323342405|ref|ZP_08082637.1| cold shock protein B [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463517|gb|EFY08711.1| cold shock protein B [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 65

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +K +N +KG+GFIT     E G D+F H + +   G   + EG  V ++ V+++
Sbjct: 2  KGKVKTFNKNKGFGFITA----EDGQDIFFHYTHLIMEGFKTIEEGTEVEFELVESE 54


>gi|195953301|ref|YP_002121591.1| cold-shock DNA-binding domain protein [Hydrogenobaculum sp.
          Y04AAS1]
 gi|195932913|gb|ACG57613.1| cold-shock DNA-binding domain protein [Hydrogenobaculum sp.
          Y04AAS1]
          Length = 71

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 7/71 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA--SAGLFNLTEGQLVTYDYVQNDAN 62
          G++KW++ +KGYGF+T +   ++  DVF+H SA+     G   L +GQ V ++ V  D+ 
Sbjct: 5  GTVKWFSKEKGYGFLTRD---DNQGDVFVHFSAIDPNRQGFKTLVQGQRVEFE-VDQDSK 60

Query: 63 GKYSAENLKLV 73
          G   A+N++++
Sbjct: 61 GP-RAKNVRVL 70


>gi|83815315|ref|YP_445098.1| cold-shock DNA-binding domain-containing protein [Salinibacter
          ruber DSM 13855]
 gi|294506974|ref|YP_003571032.1| 'Cold-shock' DNA-binding domain [Salinibacter ruber M8]
 gi|83756709|gb|ABC44822.1| 'Cold-shock' DNA-binding domain, putative [Salinibacter ruber DSM
          13855]
 gi|294343302|emb|CBH24080.1| 'Cold-shock' DNA-binding domain [Salinibacter ruber M8]
          Length = 69

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 6/59 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW++P +GYGF+ P+      DDVFLH S V      +L EG  + ++  + +
Sbjct: 1  METGTVKWFSPAEGYGFVEPDNGE---DDVFLHHSEVPDE---DLEEGDRLEFEIEETE 53


>gi|157738090|ref|YP_001490774.1| cold-shock protein, DNA-binding [Arcobacter butzleri RM4018]
 gi|315636444|ref|ZP_07891687.1| cold shock protein CspA [Arcobacter butzleri JV22]
 gi|157699944|gb|ABV68104.1| cold-shock protein, DNA-binding [Arcobacter butzleri RM4018]
 gi|315479272|gb|EFU69962.1| cold shock protein CspA [Arcobacter butzleri JV22]
          Length = 72

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 5/58 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60
          G++KW+N +KG+GFI  E   +   + F+H S + S+  G   L +GQ V+++  +ND
Sbjct: 7  GTVKWFNSEKGFGFIQLENEDQ---EFFVHHSEINSSNYGRATLNDGQKVSFEIGKND 61


>gi|254196032|ref|ZP_04902457.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
 gi|169652776|gb|EDS85469.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
          Length = 57

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V+++
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMEGFKTLKENQRVSFE 51


>gi|319776304|ref|YP_004138792.1| cold shock protein [Haemophilus influenzae F3047]
 gi|319897065|ref|YP_004135260.1| cold shock protein homolog [Haemophilus influenzae F3031]
 gi|317432569|emb|CBY80929.1| cold shock protein homolog [Haemophilus influenzae F3031]
 gi|317450895|emb|CBY87120.1| cold shock protein homolog [Haemophilus influenzae F3047]
          Length = 72

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI+ EG      D+F H S +   G  +L  GQ V ++ +  D  G 
Sbjct: 4  GIVKWFNNAKGFGFISAEGVDA---DIFAHYSVIEMDGYRSLKAGQKVQFEVLHGD-KGS 59

Query: 65 YSAENLKLVP 74
          ++    K++P
Sbjct: 60 HAT---KIIP 66


>gi|169824501|ref|YP_001692112.1| cold shock protein [Finegoldia magna ATCC 29328]
 gi|302380494|ref|ZP_07268959.1| cold shock protein CspD [Finegoldia magna ACS-171-V-Col3]
 gi|303233739|ref|ZP_07320393.1| cold shock protein CspD [Finegoldia magna BVS033A4]
 gi|167831306|dbj|BAG08222.1| cold shock protein [Finegoldia magna ATCC 29328]
 gi|302311437|gb|EFK93453.1| cold shock protein CspD [Finegoldia magna ACS-171-V-Col3]
 gi|302495173|gb|EFL54925.1| cold shock protein CspD [Finegoldia magna BVS033A4]
          Length = 67

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55
          +G +KW+N  KG+GFI    STE   DVF+H +A+   G +  L E Q V ++
Sbjct: 3  KGKVKWFNATKGFGFI----STEDQGDVFVHYTAIEDNGEYRKLEENQEVEFE 51


>gi|110634084|ref|YP_674292.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
           BNC1]
 gi|110285068|gb|ABG63127.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
          Length = 197

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   G+  L  GQ+V   + + D 
Sbjct: 123 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGVTELRPGQVVLVRFGRGD- 178

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 179 KGLMAAE 185



 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G+IKW++  KG+GFI P+   E G DV LH S +   G      G  V 
Sbjct: 33 GAIKWFDVAKGFGFILPD-IAEFG-DVLLHVSCLRRDGFQTALSGARVV 79


>gi|322831731|ref|YP_004211758.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|321166932|gb|ADW72631.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
          Length = 70

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +
Sbjct: 7  GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEF 53


>gi|332535445|ref|ZP_08411230.1| cold shock protein CspD [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035128|gb|EGI71641.1| cold shock protein CspD [Pseudoalteromonas haloplanktis ANT/505]
          Length = 72

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI  +G     +D+F H S +   G   L  GQ VT++  Q
Sbjct: 4  GKVKWFNNAKGFGFIVEDGCE---NDIFAHYSTIVMDGYKTLKAGQDVTFELEQ 54


>gi|42560588|ref|NP_975039.1| cold shock protein [Mycoplasma mycoides subsp. mycoides SC str.
          PG1]
 gi|42492084|emb|CAE76681.1| COLD SHOCK PROTEIN [Mycoplasma mycoides subsp. mycoides SC str.
          PG1]
          Length = 69

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G +KW+N +KG+GFIT +   +   DVF++ S +   G   L +GQ VTY+
Sbjct: 1  MNTGIVKWFNDEKGFGFITNDSDNK---DVFVYYSNINVNGYKALEQGQKVTYE 51


>gi|116326594|ref|YP_796515.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
          subsp. cremoris SK11]
 gi|125624080|ref|YP_001032563.1| cold shock protein cspC [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|190571793|ref|YP_001966472.1| CSPC [Lactococcus lactis]
 gi|281492699|ref|YP_003354679.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|76574949|gb|ABA47418.1| cold shock protein C [Lactococcus lactis]
 gi|108736192|gb|ABG00321.1| CSPC [Lactococcus lactis]
 gi|116108962|gb|ABJ74084.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
          cremoris SK11]
 gi|124492888|emb|CAL97847.1| cold shock protein cspC [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|281376356|gb|ADA65846.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|300070849|gb|ADJ60249.1| cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000]
 gi|326406196|gb|ADZ63267.1| cold shock protein CspC [Lactococcus lactis subsp. lactis CV56]
 gi|326407855|gb|ADZ64926.1| cold shock protein CspC [Lactococcus lactis subsp. lactis CV56]
          Length = 66

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G+I W+N DKGYGFI  +       DVF +  ++         EGQ VT+D ++  +
Sbjct: 1  MNKGTINWFNADKGYGFIMADDMQ----DVFAYLLSIQGNDFKKYDEGQKVTFD-IKMTS 55

Query: 62 NGKYSA 67
           G+Y++
Sbjct: 56 RGRYAS 61


>gi|238920339|ref|YP_002933854.1| cold-shock DNA-binding domain, [Edwardsiella ictaluri 93-146]
 gi|238869908|gb|ACR69619.1| cold-shock DNA-binding domain, putative [Edwardsiella ictaluri
          93-146]
          Length = 69

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          ++  G +KWY+P  G G I+P    + GDD+++ R+ +ASA    L EGQ V +
Sbjct: 2  ILKMGFVKWYDPTAGLGVISP---LDGGDDLYVSRTGIASAHNKLLREGQRVEF 52


>gi|1402737|gb|AAC80232.1| major cold-shock protein [Bacillus cereus]
          Length = 45

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +KG+GFI  EG    G+DVF+H SA+   G   L EGQ VT++  Q +
Sbjct: 1  EKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN 44


>gi|145222299|ref|YP_001132977.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          gilvum PYR-GCK]
 gi|315442733|ref|YP_004075612.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
 gi|145214785|gb|ABP44189.1| cold-shock DNA-binding protein family [Mycobacterium gilvum
          PYR-GCK]
 gi|315261036|gb|ADT97777.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
          Length = 136

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KWY+ +KG+GF+    S E G+DV++ RS+   AG+  L  GQ V +
Sbjct: 4  GRVKWYDAEKGFGFL----SQEEGEDVYV-RSSALPAGVEGLKAGQRVEF 48


>gi|332827423|gb|EGK00175.1| hypothetical protein HMPREF9455_03507 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 150

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 7/51 (13%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           G ++++NPDKGYGFI   GST   D  F H S+  ++    +T+G +VT++
Sbjct: 86  GRVEYFNPDKGYGFIKHTGST---DKYFFHISSAPAS----ITDGNMVTFE 129


>gi|269125076|ref|YP_003298446.1| cold-shock DNA-binding domain-containing protein [Thermomonospora
          curvata DSM 43183]
 gi|268310034|gb|ACY96408.1| cold-shock DNA-binding domain protein [Thermomonospora curvata
          DSM 43183]
          Length = 135

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 5/57 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          V  G +KWY+  KG+GF+T     + G +VF+H SA+ S G+ +L  GQ V +  V+
Sbjct: 5  VPTGKVKWYDAGKGFGFLT----RDDGGEVFVHSSALPS-GVTSLKTGQRVEFGVVE 56


>gi|257878221|ref|ZP_05657874.1| cold-shock domain-contain protein [Enterococcus faecium
          1,230,933]
 gi|257880999|ref|ZP_05660652.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,502]
 gi|257884656|ref|ZP_05664309.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,501]
 gi|257889581|ref|ZP_05669234.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,410]
 gi|257892479|ref|ZP_05672132.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,408]
 gi|258616270|ref|ZP_05714040.1| cold-shock domain-contain protein [Enterococcus faecium DO]
 gi|260559265|ref|ZP_05831451.1| cold-shock domain-containing protein [Enterococcus faecium C68]
 gi|261207798|ref|ZP_05922483.1| cold-shock domain-containing protein [Enterococcus faecium TC 6]
 gi|257812449|gb|EEV41207.1| cold-shock domain-contain protein [Enterococcus faecium
          1,230,933]
 gi|257816657|gb|EEV43985.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,502]
 gi|257820494|gb|EEV47642.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,501]
 gi|257825941|gb|EEV52567.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,410]
 gi|257828858|gb|EEV55465.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,408]
 gi|260075022|gb|EEW63338.1| cold-shock domain-containing protein [Enterococcus faecium C68]
 gi|260078181|gb|EEW65887.1| cold-shock domain-containing protein [Enterococcus faecium TC 6]
          Length = 77

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KGYGFI    S +  +++F+H +A+   G   L E Q+V ++ ++
Sbjct: 4  GIVKWFDNKKGYGFI----SYDDTEEIFVHFTAIEEEGFKTLEENQVVEFEIIE 53


>gi|256826183|ref|YP_003150143.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM
          20547]
 gi|256689576|gb|ACV07378.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM
          20547]
          Length = 133

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++ DKG+GF+      ++G DVFL  SA+  AG+  L  G  + Y  VQ
Sbjct: 4  GKVKWFDADKGFGFV----GDDAGSDVFLRASAL-PAGVTTLRPGTRLEYSIVQ 52


>gi|258654047|ref|YP_003203203.1| cold-shock DNA-binding domain-containing protein [Nakamurella
          multipartita DSM 44233]
 gi|258557272|gb|ACV80214.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
          DSM 44233]
          Length = 101

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          RG +K++ PDKG+G IT +   E G D ++H S + S G   L  G +V +DY
Sbjct: 3  RGFVKFFKPDKGWGAITSDALPE-GSDAWVHFSVIESDGYRALDAGDVVDFDY 54


>gi|329941396|ref|ZP_08290675.1| cold shock protein B [Streptomyces griseoaurantiacus M045]
 gi|329299927|gb|EGG43826.1| cold shock protein B [Streptomyces griseoaurantiacus M045]
          Length = 127

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  AG+  L  GQ V +  V
Sbjct: 4  GKVKWFNGEKGFGFL----SRDDGGDVFVH-SSVLPAGVDALKPGQRVEFGVV 51


>gi|225013100|ref|ZP_03703514.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
          MS024-2A]
 gi|225002758|gb|EEG40740.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
          MS024-2A]
          Length = 63

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFIT +   ESG+DVF+H SA+       L EG  V  +YV+ D    
Sbjct: 3  GTVKFFNEAKGFGFITND---ESGEDVFVHISALNGV---TLREGAKV--EYVEEDGKKG 54

Query: 65 YSAENLKLV 73
            A ++ ++
Sbjct: 55 KQASSISVL 63


>gi|240139761|ref|YP_002964238.1| putative tandem cold-shock DNA-binding domain protein
          [Methylobacterium extorquens AM1]
 gi|240009735|gb|ACS40961.1| putative tandem cold-shock DNA-binding domain protein
          [Methylobacterium extorquens AM1]
          Length = 181

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G IKW++P KG+GFI P+   +   DV LH + +   G    +EG  +  + VQ 
Sbjct: 18 GRIKWFDPSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR 69



 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  +G+GF++    T    D+F+H   +   G+  L  G+ V   Y   D 
Sbjct: 107 LERAVVKWFNRLRGFGFLSRGDDT---PDIFVHMETLRRYGIAELKPGEEVMVRY--GDG 161

Query: 62  NGKYSAENLKLV 73
           +    A  ++LV
Sbjct: 162 SKGAMAAEVRLV 173


>gi|90415923|ref|ZP_01223856.1| Cold shock protein [marine gamma proteobacterium HTCC2207]
 gi|90332297|gb|EAS47494.1| Cold shock protein [marine gamma proteobacterium HTCC2207]
          Length = 89

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW++ D+G+GFI P+       ++F H   +   G   L   Q VTYD V++ 
Sbjct: 1  MADTGRVKWFSNDRGFGFIEPDNGER---ELFAHHQNIIMEGYKTLKCFQRVTYD-VEHG 56

Query: 61 ANGKYSA 67
           NG+++ 
Sbjct: 57 KNGRHAV 63


>gi|255036777|ref|YP_003087398.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
          fermentans DSM 18053]
 gi|254949533|gb|ACT94233.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
          18053]
          Length = 63

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 8/62 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G +K++N  KG+GFI+PE   E GDD+F+H S +       + E   V+Y+ V+N  
Sbjct: 1  MNKGKVKFFNETKGFGFISPE---EGGDDIFVHVSGLIDE----IRENDSVSYE-VENGR 52

Query: 62 NG 63
           G
Sbjct: 53 KG 54


>gi|289566250|ref|ZP_06446682.1| cold shock protein CspB [Enterococcus faecium D344SRF]
 gi|293553482|ref|ZP_06674110.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293559343|ref|ZP_06675885.1| cold shock protein [Enterococcus faecium E1162]
 gi|293569841|ref|ZP_06680928.1| cold-shock protein [Enterococcus faecium E1071]
 gi|294616589|ref|ZP_06696365.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294617895|ref|ZP_06697504.1| cold shock protein [Enterococcus faecium E1679]
 gi|294622251|ref|ZP_06701305.1| cold shock protein [Enterococcus faecium U0317]
 gi|314939747|ref|ZP_07846969.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133a04]
 gi|314941752|ref|ZP_07848629.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133C]
 gi|314948297|ref|ZP_07851689.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0082]
 gi|314952385|ref|ZP_07855392.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133A]
 gi|314991996|ref|ZP_07857449.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133B]
 gi|314995706|ref|ZP_07860796.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133a01]
 gi|289161957|gb|EFD09825.1| cold shock protein CspB [Enterococcus faecium D344SRF]
 gi|291587589|gb|EFF19466.1| cold-shock protein [Enterococcus faecium E1071]
 gi|291590539|gb|EFF22272.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291595840|gb|EFF27124.1| cold shock protein [Enterococcus faecium E1679]
 gi|291598222|gb|EFF29317.1| cold shock protein [Enterococcus faecium U0317]
 gi|291602359|gb|EFF32583.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291606707|gb|EFF36099.1| cold shock protein [Enterococcus faecium E1162]
 gi|313590097|gb|EFR68942.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133a01]
 gi|313593431|gb|EFR72276.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133B]
 gi|313595502|gb|EFR74347.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133A]
 gi|313599430|gb|EFR78273.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133C]
 gi|313640976|gb|EFS05556.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133a04]
 gi|313645278|gb|EFS09858.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0082]
          Length = 80

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KGYGFI    S +  +++F+H +A+   G   L E Q+V ++ ++
Sbjct: 7  GIVKWFDNKKGYGFI----SYDDTEEIFVHFTAIEEEGFKTLEENQVVEFEIIE 56


>gi|27365451|ref|NP_760979.1| cold shock domain-containing protein CspD [Vibrio vulnificus
          CMCP6]
 gi|37680508|ref|NP_935117.1| cold shock-like protein CspD [Vibrio vulnificus YJ016]
 gi|27361599|gb|AAO10506.1| cold shock domain protein CspD [Vibrio vulnificus CMCP6]
 gi|37199256|dbj|BAC95088.1| cold shock-like protein CspD [Vibrio vulnificus YJ016]
          Length = 76

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI    S +   D+F H S +   G   L  GQ VTY+
Sbjct: 7  GTVKWFNNAKGFGFIC---SDQEEGDIFAHYSTIQMDGYRTLKAGQQVTYE 54


>gi|108801438|ref|YP_641635.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          MCS]
 gi|108771857|gb|ABG10579.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS]
          Length = 147

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ +KG+GF+    S E G+DV++ RS+   AG+  L  GQ V +      A
Sbjct: 12 VPTGRVKWYDAEKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGV----A 62

Query: 62 NGKYSAENLKL 72
           G+   + L L
Sbjct: 63 AGRRGPQALSL 73


>gi|1402739|gb|AAC80233.1| major cold-shock protein [Bacillus subtilis]
          Length = 45

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 1  EKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN 44


>gi|257898616|ref|ZP_05678269.1| cold-shock domain-contain protein [Enterococcus faecium Com15]
 gi|257836528|gb|EEV61602.1| cold-shock domain-contain protein [Enterococcus faecium Com15]
          Length = 76

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KGYGFI    S +  +++F+H +A+   G   L E Q+V ++ ++
Sbjct: 4  GIVKWFDNKKGYGFI----SYDDTEEIFVHFTAIEEEGFKTLEENQVVEFEIIE 53


>gi|119383611|ref|YP_914667.1| cold-shock DNA-binding domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119373378|gb|ABL68971.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
          PD1222]
          Length = 197

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)

Query: 5  GSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW++  KG+GF+T P+G    G D+ LH + + + G  ++ EG  V    +Q    G
Sbjct: 13 GVVKWFDGSKGFGFLTDPDG----GADILLHANVLRNFGQSSVAEGSHVIA-IIQKTPRG 67

Query: 64 KYSAENLKLVPKSSN 78
            + E L++ P +S 
Sbjct: 68 MQAVEVLEITPPASE 82


>gi|301061696|ref|ZP_07202437.1| cold shock protein CspD [delta proteobacterium NaphS2]
 gi|300444156|gb|EFK08180.1| cold shock protein CspD [delta proteobacterium NaphS2]
          Length = 62

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          KW++  KG+GFI    S E G D+F+H + +   G   L+EG  V+++  ++D   K
Sbjct: 3  KWFSDRKGFGFI----SQEDGQDLFVHHTGIDMPGFKTLSEGDRVSFEIEESDRGPK 55


>gi|55822802|ref|YP_141243.1| cold shock protein A [Streptococcus thermophilus CNRZ1066]
 gi|55738787|gb|AAV62428.1| cold shock protein A [Streptococcus thermophilus CNRZ1066]
          Length = 72

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G+I W+N DKGYGFI  +       DVF +  ++         EGQ VT+D ++  +
Sbjct: 4  MNKGTINWFNADKGYGFIMADDMQ----DVFAYLISIQGNDFKKYDEGQKVTFD-IKMTS 58

Query: 62 NGKYSA 67
           G+Y +
Sbjct: 59 RGRYDS 64


>gi|257887492|ref|ZP_05667145.1| cold-shock domain-contain protein [Enterococcus faecium
          1,141,733]
 gi|257895987|ref|ZP_05675640.1| cold-shock domain-contain protein [Enterococcus faecium Com12]
 gi|293377445|ref|ZP_06623647.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
 gi|257823546|gb|EEV50478.1| cold-shock domain-contain protein [Enterococcus faecium
          1,141,733]
 gi|257832552|gb|EEV58973.1| cold-shock domain-contain protein [Enterococcus faecium Com12]
 gi|292643963|gb|EFF62071.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
          Length = 76

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KGYGFI    S +  +++F+H +A+   G   L E Q+V ++ ++
Sbjct: 4  GIVKWFDNKKGYGFI----SYDDTEEIFVHFTAIEEEGFKTLEENQVVEFEIIE 53


>gi|227551399|ref|ZP_03981448.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecium TX1330]
 gi|293570497|ref|ZP_06681552.1| cold-shock protein [Enterococcus faecium E980]
 gi|227179518|gb|EEI60490.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecium TX1330]
 gi|291609443|gb|EFF38710.1| cold-shock protein [Enterococcus faecium E980]
          Length = 79

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KGYGFI    S +  +++F+H +A+   G   L E Q+V ++ ++
Sbjct: 7  GIVKWFDNKKGYGFI----SYDDTEEIFVHFTAIEEEGFKTLEENQVVEFEIIE 56


>gi|194751983|ref|XP_001958302.1| GF10852 [Drosophila ananassae]
 gi|190625584|gb|EDV41108.1| GF10852 [Drosophila ananassae]
          Length = 347

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G++V +D V
Sbjct: 63  GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 116


>gi|319783223|ref|YP_004142699.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169111|gb|ADV12649.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 198

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   G+  L  GQ+V   + + D 
Sbjct: 124 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRYGVTELRPGQVVLVRFGRGD- 179

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 180 KGLMAAE 186



 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G+IKW++  KGYGFI P+       D+ LH + +   G     EG  V 
Sbjct: 34 GAIKWFDVAKGYGFILPDDGISG--DILLHVTCLRRDGFQTALEGARVV 80


>gi|257387599|ref|YP_003177372.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
 gi|257169906|gb|ACV47665.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
          Length = 64

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 8/67 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++ ++N   GYGFI  E   ++ DDVF H   +      +L EGQ V +D VQ D   
Sbjct: 3  QGTVDFFNDTGGYGFIDTE---DADDDVFFHMEDIGGP---DLEEGQEVEFDIVQADKGP 56

Query: 64 KYSAENL 70
          +  AENL
Sbjct: 57 R--AENL 61


>gi|28897786|ref|NP_797391.1| cold shock-like protein CspD [Vibrio parahaemolyticus RIMD
          2210633]
 gi|28805999|dbj|BAC59275.1| cold shock-like protein CspD [Vibrio parahaemolyticus RIMD
          2210633]
          Length = 79

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI    S E   D+F H S +   G   L  GQ V+Y+
Sbjct: 11 GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 58


>gi|320155835|ref|YP_004188214.1| cold shock protein CspD [Vibrio vulnificus MO6-24/O]
 gi|319931147|gb|ADV86011.1| cold shock protein CspD [Vibrio vulnificus MO6-24/O]
          Length = 73

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI    S +   D+F H S +   G   L  GQ VTY+
Sbjct: 4  GTVKWFNNAKGFGFIC---SDQEEGDIFAHYSTIQMDGYRTLKAGQQVTYE 51


>gi|126731269|ref|ZP_01747076.1| cold shock DNA-binding domain protein [Sagittula stellata E-37]
 gi|126708180|gb|EBA07239.1| cold shock DNA-binding domain protein [Sagittula stellata E-37]
          Length = 175

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GF+    S   G D+ LH + + + G  ++ +G L+   +VQ    G 
Sbjct: 13 GKVKWFDPVKGFGFVV---SDAGGPDILLHANVLRNFGQSSVADGALIEI-FVQRTDRGV 68

Query: 65 YSAENLKLVPKSSN 78
           + + L + P  + 
Sbjct: 69 QATQVLSIEPPETT 82



 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G     DDVF+H   +  +GL +L  G+ +    + +   G+ +
Sbjct: 108 VKWFDKAKGFGFANVFGKP---DDVFIHIEVLRRSGLSDLQPGEALAIRVI-DGRRGRMA 163

Query: 67  AE 68
            E
Sbjct: 164 ME 165


>gi|325478635|gb|EGC81747.1| major cold shock protein CspA [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 66

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +K ++  KG+GFIT E     G+D+F+H S +   G   L   Q+V +D +  DA
Sbjct: 1  MKRGEVKIFDNKKGFGFITCE-----GEDLFVHYSDIDKDGFKALYPKQIVEFDRI--DA 53

Query: 62 NGKYSAENLKLV 73
               A N+K+V
Sbjct: 54 PRGPQAINVKIV 65


>gi|313236956|emb|CBY12203.1| unnamed protein product [Oikopleura dioica]
          Length = 270

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 10/60 (16%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG------LFNLTEGQLVTYDYVQ 58
           G++KW+N  +G+GFI      + G DVFLH+S V  +G      LF L  G+ V +D  Q
Sbjct: 87  GTVKWFNISRGFGFIE---RNDGGADVFLHQSGVVGSGRRHRFSLF-LKGGEEVEFDVAQ 142


>gi|254786003|ref|YP_003073432.1| cold-shock DNA-binding domain-containing protein [Teredinibacter
          turnerae T7901]
 gi|237684504|gb|ACR11768.1| cold-shock DNA-binding domain protein [Teredinibacter turnerae
          T7901]
          Length = 72

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 5  GSIKWYN--PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N    +GYGFIT     E  +D+F+H   +   G  +LTEGQ V ++
Sbjct: 7  GTVKWFNNASARGYGFITR---GEESEDIFVHYRNIRGEGYRSLTEGQKVEFE 56


>gi|254443950|ref|ZP_05057426.1| 'Cold-shock' DNA-binding domain, putative [Verrucomicrobiae
          bacterium DG1235]
 gi|198258258|gb|EDY82566.1| 'Cold-shock' DNA-binding domain, putative [Verrucomicrobiae
          bacterium DG1235]
          Length = 64

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 6/52 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G+IKW++ +KGYGFI     +E GDD+F+H S       + L EG  V ++
Sbjct: 3  KGTIKWFDQEKGYGFIQ---QSEGGDDLFVHHSETDG---YALNEGDSVEFE 48


>gi|162452081|ref|YP_001614448.1| cold shock protein [Sorangium cellulosum 'So ce 56']
 gi|161162663|emb|CAN93968.1| cold shock protein [Sorangium cellulosum 'So ce 56']
          Length = 68

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N +KG+GFI      E+G DVF+H S +   G   L E + V ++
Sbjct: 4  GKVKWFNDEKGWGFI----KQETGPDVFVHYSQINGEGRRRLFEDETVEFE 50


>gi|3121928|sp|Q51929|CSPA_PHOMO RecName: Full=Major cold shock protein
 gi|1402763|gb|AAC80249.1| major cold-shock protein [Photobacterium leiognathi subsp.
          mandapamensis]
          Length = 46

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +KG+GF+T       G DVF+H  A+AS G   LTEGQ V++D  Q
Sbjct: 1  EKGFGFLTQ---NNGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQ 43


>gi|148645030|gb|ABR01045.1| Csp [uncultured Geobacter sp.]
          Length = 56

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +N  KG+GF+  EG    G+DVF H SA+A  G  +L EG  VT++  +
Sbjct: 1  FNDGKGFGFLEQEG----GEDVFCHFSAIAGEGFKSLAEGDRVTFEVTK 45


>gi|120405994|ref|YP_955823.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          vanbaalenii PYR-1]
 gi|119958812|gb|ABM15817.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 136

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF+    S E G+DV++ RS+   AG+  L  GQ V +      A G+
Sbjct: 4  GRVKWYDAEKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGV----AAGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|294787495|ref|ZP_06752748.1| cold-shock domain family protein [Parascardovia denticolens
          F0305]
 gi|315226929|ref|ZP_07868717.1| cold-shock domain family protein [Parascardovia denticolens DSM
          10105]
 gi|294484851|gb|EFG32486.1| cold-shock domain family protein [Parascardovia denticolens
          F0305]
 gi|315121061|gb|EFT84193.1| cold-shock domain family protein [Parascardovia denticolens DSM
          10105]
          Length = 129

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 5/55 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G I+W++  KGYGFIT    ++ G+DVF+ ++A+  AG+  L +G  V +  V +
Sbjct: 4  GEIRWFDAKKGYGFIT----SDDGEDVFMPKTAL-PAGVTTLRKGAKVEFSRVDS 53


>gi|156973854|ref|YP_001444761.1| hypothetical protein VIBHAR_01564 [Vibrio harveyi ATCC BAA-1116]
 gi|156525448|gb|ABU70534.1| hypothetical protein VIBHAR_01564 [Vibrio harveyi ATCC BAA-1116]
          Length = 79

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI    S E   D+F H S +   G   L  GQ V+Y+
Sbjct: 11 GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 58


>gi|153837326|ref|ZP_01989993.1| cold shock domain protein CspD [Vibrio parahaemolyticus AQ3810]
 gi|260365334|ref|ZP_05777885.1| cold shock domain protein CspD [Vibrio parahaemolyticus K5030]
 gi|260876950|ref|ZP_05889305.1| cold shock domain protein CspD [Vibrio parahaemolyticus AN-5034]
 gi|260897909|ref|ZP_05906405.1| cold shock domain protein CspD [Vibrio parahaemolyticus Peru-466]
 gi|260901418|ref|ZP_05909813.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037]
 gi|149749357|gb|EDM60130.1| cold shock domain protein CspD [Vibrio parahaemolyticus AQ3810]
 gi|308085479|gb|EFO35174.1| cold shock domain protein CspD [Vibrio parahaemolyticus Peru-466]
 gi|308093637|gb|EFO43332.1| cold shock domain protein CspD [Vibrio parahaemolyticus AN-5034]
 gi|308107511|gb|EFO45051.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308112690|gb|EFO50230.1| cold shock domain protein CspD [Vibrio parahaemolyticus K5030]
 gi|328473238|gb|EGF44086.1| cold shock-like protein CspD [Vibrio parahaemolyticus 10329]
          Length = 72

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI    S E   D+F H S +   G   L  GQ V+Y+
Sbjct: 4  GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 51


>gi|163802086|ref|ZP_02195982.1| cold shock-like protein CspD [Vibrio sp. AND4]
 gi|159174227|gb|EDP59035.1| cold shock-like protein CspD [Vibrio sp. AND4]
          Length = 72

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI    S E   D+F H S +   G   L  GQ V+Y+
Sbjct: 4  GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 51


>gi|118468185|ref|YP_889929.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          smegmatis str. MC2 155]
 gi|118169472|gb|ABK70368.1| 'Cold-shock' DNA-binding domain protein [Mycobacterium smegmatis
          str. MC2 155]
          Length = 149

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KWY+ +KG+GF+    S E G+DV++ RS+   AG+  L  GQ V +
Sbjct: 17 GKVKWYDAEKGFGFL----SQEDGEDVYV-RSSALPAGVEALKSGQRVEF 61


>gi|195173115|ref|XP_002027340.1| GL15684 [Drosophila persimilis]
 gi|198465413|ref|XP_002134972.1| GA23502 [Drosophila pseudoobscura pseudoobscura]
 gi|194113183|gb|EDW35226.1| GL15684 [Drosophila persimilis]
 gi|198150149|gb|EDY73599.1| GA23502 [Drosophila pseudoobscura pseudoobscura]
          Length = 335

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G++V +D V
Sbjct: 51  GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 104


>gi|167468427|ref|ZP_02333131.1| major cold shock protein Cspa1 [Yersinia pestis FV-1]
          Length = 66

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 8  KWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          KW++  KG+GFITP +GS     DVF+H SA+ S     L EGQ V +  ++N A G  +
Sbjct: 6  KWFDVCKGFGFITPADGSL----DVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGPAA 60

Query: 67 AENLKL 72
             + L
Sbjct: 61 VNVIAL 66


>gi|152998000|ref|YP_001342835.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
          MWYL1]
 gi|150838924|gb|ABR72900.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
          MWYL1]
          Length = 85

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  KG GFI  E  +    DVF+H  ++   G  +L +GQLV++
Sbjct: 6  GKVKWFNDAKGVGFIKREEDS----DVFVHYKSIVCDGHKSLRKGQLVSF 51


>gi|261252479|ref|ZP_05945052.1| cold shock protein CspD [Vibrio orientalis CIP 102891]
 gi|260935870|gb|EEX91859.1| cold shock protein CspD [Vibrio orientalis CIP 102891]
          Length = 73

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI  EG  E G DVF H S +   G   L  GQ V ++
Sbjct: 4  GTVKWFNNAKGFGFICSEG--EDG-DVFAHYSTIKMDGYRTLKAGQQVNFE 51


>gi|116627692|ref|YP_820311.1| cold shock protein A [Streptococcus thermophilus LMD-9]
 gi|116100969|gb|ABJ66115.1| cold-shock DNA-binding protein family [Streptococcus thermophilus
          LMD-9]
 gi|312278224|gb|ADQ62881.1| Cold shock-like protein cspA [Streptococcus thermophilus ND03]
          Length = 66

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G+I W+N DKGYGFI  +       DVF +  ++         EGQ VT+D ++  +
Sbjct: 1  MNKGTINWFNADKGYGFIMADDMQ----DVFAYLISIQGNDFKKYDEGQKVTFD-IKMTS 55

Query: 62 NGKYSA 67
           G+Y +
Sbjct: 56 RGRYDS 61


>gi|91229059|ref|ZP_01262885.1| cold shock-like protein CspD [Vibrio alginolyticus 12G01]
 gi|262394729|ref|YP_003286583.1| cold shock protein CspD [Vibrio sp. Ex25]
 gi|269967652|ref|ZP_06181702.1| cold shock-like protein CspD [Vibrio alginolyticus 40B]
 gi|91187452|gb|EAS73792.1| cold shock-like protein CspD [Vibrio alginolyticus 12G01]
 gi|262338323|gb|ACY52118.1| cold shock protein CspD [Vibrio sp. Ex25]
 gi|269827739|gb|EEZ82023.1| cold shock-like protein CspD [Vibrio alginolyticus 40B]
          Length = 72

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI    S E   D+F H S +   G   L  GQ V+Y+
Sbjct: 4  GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 51


>gi|119870591|ref|YP_940543.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          KMS]
 gi|126437423|ref|YP_001073114.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          JLS]
 gi|119696680|gb|ABL93753.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS]
 gi|126237223|gb|ABO00624.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS]
          Length = 136

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF+    S E G+DV++ RS+   AG+  L  GQ V +      A G+
Sbjct: 4  GRVKWYDAEKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGV----AAGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|76364244|sp|P0C0F0|CSPA_STRPY RecName: Full=Major cold shock protein
 gi|1402783|gb|AAC80258.1| major cold-shock protein [Streptococcus pyogenes]
          Length = 45

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 4/43 (9%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +KG+GFI    STE+G DVF H SA+ + G   L EGQ V +D
Sbjct: 1  EKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVAFD 39


>gi|3892588|emb|CAA76696.1| cold shock protein C [Lactococcus lactis subsp. cremoris MG1363]
          Length = 66

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G I W+N DKGYGFI  +       DVF +  ++         EGQ VT+D ++  +
Sbjct: 1  MNKGKINWFNADKGYGFIMADDMQ----DVFAYLLSIQGNDFKKYDEGQKVTFD-IKMTS 55

Query: 62 NGKYSA 67
           G+Y++
Sbjct: 56 RGRYAS 61


>gi|319405712|emb|CBI79335.1| cold shock protein [Bartonella sp. AR 15-3]
          Length = 191

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N +KG+GF++    TE   D+F+H   +   GL  L  GQ+V   +
Sbjct: 117 LERAIVKWFNREKGFGFLSRGQGTE---DIFIHMEILRRFGLAELRSGQVVLVRF 168



 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKW++  KGYGFI P+       D+ LH + +   G     EG  V     Q +   K
Sbjct: 28 GVIKWFDGSKGYGFIIPD--FPGLPDILLHVTVMRRDGFQTALEGAKVICVVKQTERGLK 85


>gi|269960957|ref|ZP_06175326.1| cold shock-like protein CspD [Vibrio harveyi 1DA3]
 gi|269834176|gb|EEZ88266.1| cold shock-like protein CspD [Vibrio harveyi 1DA3]
          Length = 72

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI    S E   D+F H S +   G   L  GQ V+Y+
Sbjct: 4  GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 51


>gi|329123451|ref|ZP_08252015.1| cold shock domain protein CspD [Haemophilus aegyptius ATCC 11116]
 gi|327471033|gb|EGF16488.1| cold shock domain protein CspD [Haemophilus aegyptius ATCC 11116]
          Length = 72

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI+ EG      D+F H S +   G  +L  GQ V ++ +  D  G 
Sbjct: 4  GIVKWFNNAKGFGFISAEGVDA---DIFAHYSVIEMDGYRSLKVGQKVQFEVLHGD-KGS 59

Query: 65 YSAENLKLVP 74
          ++    K++P
Sbjct: 60 HAT---KIIP 66


>gi|165976142|ref|YP_001651735.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 3 str. JL03]
 gi|190150037|ref|YP_001968562.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|303251483|ref|ZP_07337659.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|303252356|ref|ZP_07338522.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 2 str. 4226]
 gi|307245585|ref|ZP_07527671.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|307247704|ref|ZP_07529743.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
 gi|307249938|ref|ZP_07531910.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|307252281|ref|ZP_07534178.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|307254540|ref|ZP_07536375.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|307256748|ref|ZP_07538527.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|307258995|ref|ZP_07540726.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
 gi|307261191|ref|ZP_07542866.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
 gi|307263370|ref|ZP_07544986.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
 gi|165876243|gb|ABY69291.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 3 str. JL03]
 gi|189915168|gb|ACE61420.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|302648815|gb|EFL79005.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 2 str. 4226]
 gi|302649715|gb|EFL79895.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|306853287|gb|EFM85506.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|306855807|gb|EFM87971.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
 gi|306857998|gb|EFM90082.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|306860203|gb|EFM92219.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|306862523|gb|EFM94482.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|306864796|gb|EFM96700.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|306867019|gb|EFM98876.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
 gi|306868922|gb|EFN00724.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
 gi|306871248|gb|EFN02976.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
          Length = 68

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT +       D+F H S + S G  +L  GQ V ++ +  +    
Sbjct: 4  GIVKWFNSAKGFGFITSDNVE---GDIFAHFSEIQSEGYRSLKVGQKVQFELINGERGA- 59

Query: 65 YSAENLKLVP 74
           SA  + LV 
Sbjct: 60 -SAAKISLVE 68


>gi|153835791|ref|ZP_01988458.1| cold shock domain protein CspD [Vibrio harveyi HY01]
 gi|148867479|gb|EDL66854.1| cold shock domain protein CspD [Vibrio harveyi HY01]
          Length = 72

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI    S E   D+F H S +   G   L  GQ V+Y+
Sbjct: 4  GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 51


>gi|227505644|ref|ZP_03935693.1| cold shock protein [Corynebacterium striatum ATCC 6940]
 gi|227197797|gb|EEI77845.1| cold shock protein [Corynebacterium striatum ATCC 6940]
          Length = 67

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++K++N +KGYGFI  E   +   D+F+H S +   G   L E Q V+++  +
Sbjct: 3  QGTVKFFNAEKGYGFIEME---DGSGDIFVHYSEIQGNGFRTLEENQKVSFEVAE 54


>gi|83645150|ref|YP_433585.1| cold shock protein [Hahella chejuensis KCTC 2396]
 gi|83633193|gb|ABC29160.1| Cold shock protein [Hahella chejuensis KCTC 2396]
          Length = 116

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 4  RGSIKWYNPDKGYGFITP-EGSTE-SGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G +KW+N  KGYGFI   EG+ +   +D+F+H S++   G   L  GQ V +D
Sbjct: 3  QGKVKWFNNAKGYGFIIADEGNGDLCKEDLFVHFSSIQMEGYKTLKAGQAVNFD 56


>gi|297193662|ref|ZP_06911060.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151865|gb|EFH31383.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 127

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V  +G+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPSGVEALKPGQRVEFGVV 51


>gi|261493105|ref|ZP_05989643.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2
          str. BOVINE]
 gi|261494856|ref|ZP_05991333.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2
          str. OVINE]
 gi|261309480|gb|EEY10706.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2
          str. OVINE]
 gi|261311240|gb|EEY12405.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2
          str. BOVINE]
          Length = 72

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFIT   S     D+F H S + + G  +L  GQ V ++ VQ +    
Sbjct: 4  GIVKWFNNVKGFGFIT---SDVCEGDIFAHFSEIQAEGYRSLKVGQKVQFELVQGERGA- 59

Query: 65 YSAENLKLVPKSS 77
           SA N+  + + +
Sbjct: 60 -SASNITPISEKT 71


>gi|119946476|ref|YP_944156.1| hypothetical protein Ping_2851 [Psychromonas ingrahamii 37]
 gi|119865080|gb|ABM04557.1| hypothetical protein DUF1294 [Psychromonas ingrahamii 37]
          Length = 207

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +  +N DKG+GF+ P G    G+  F+H  A  S  L     G ++ Y+ V+ D
Sbjct: 1  MKLQGKVTNWNDDKGFGFVDPNG---GGNRAFIHIKAFTSGSL-RPVNGDIIIYELVR-D 55

Query: 61 ANGKYSAENLKLVPKSSN 78
           N +Y A+ +K    + N
Sbjct: 56 QNNRYQADKIKFAGDNKN 73


>gi|320095150|ref|ZP_08026858.1| cold shock domain protein CspD [Actinomyces sp. oral taxon 178
          str. F0338]
 gi|319977932|gb|EFW09567.1| cold shock domain protein CspD [Actinomyces sp. oral taxon 178
          str. F0338]
          Length = 69

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N  KG+GFI P+  T    DVF+H S+ V  +G   L EG  V Y  V+    G
Sbjct: 4  GHVKWFNDAKGFGFIIPDDQT---GDVFVHFSSIVGQSGRRTLQEGDKVDYVAVEG-PRG 59

Query: 64 KYSAENLKLV 73
           ++ E  ++V
Sbjct: 60 LHAEEVSRVV 69


>gi|169627971|ref|YP_001701620.1| cold shock-like protein B CspB [Mycobacterium abscessus ATCC
          19977]
 gi|169239938|emb|CAM60966.1| Probable cold shock-like protein B CspB [Mycobacterium abscessus]
          Length = 137

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF+    S E G+DV++ RS+   AG+  L  GQ V +      A G+
Sbjct: 4  GKVKWYDAEKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQKVEFGM----AAGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|163791084|ref|ZP_02185504.1| cold-shock protein [Carnobacterium sp. AT7]
 gi|159873640|gb|EDP67724.1| cold-shock protein [Carnobacterium sp. AT7]
          Length = 68

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 5/58 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQ 58
          +  G++KW++ +KGYGFI         +D+F+H + + +  G  +LT+GQLV+++ ++
Sbjct: 1  MENGTVKWFSNEKGYGFI----EYNETEDIFVHFTGIVNEDGFKSLTDGQLVSFEILE 54


>gi|257057363|ref|YP_003135195.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
 gi|256587235|gb|ACU98368.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
          Length = 128

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KWY+ DKG+GF+T +G    G DV++ +SA+   G+  L  GQ + +
Sbjct: 4  GKVKWYDADKGFGFVTEDG----GRDVYVRKSALPQ-GVETLKAGQRLEF 48


>gi|149898790|gb|ABR27857.1| predicted RNA-binding protein [Triatoma infestans]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI      ++G+DVF+H+SA+        + ++ +G+ V +D V
Sbjct: 57  GTVKWFNVKSGYGFIN---RKDTGEDVFVHQSAIIKNNPKKAVRSVGDGETVEFDVV 110


>gi|3121931|sp|Q53984|CSPA_STRDY RecName: Full=Major cold shock protein
 gi|1402775|gb|AAC80257.1| major cold-shock protein [Streptococcus dysgalactiae]
          Length = 45

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 4/43 (9%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +KG+GFI    STE+G DVF H SA+ + G   L EGQ V +D
Sbjct: 1  EKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVEFD 39


>gi|110680380|ref|YP_683387.1| cold shock protein [Roseobacter denitrificans OCh 114]
 gi|109456496|gb|ABG32701.1| cold shock protein [Roseobacter denitrificans OCh 114]
          Length = 178

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GF+  +     G D+ LH + + + G  ++ +G  V  + VQ    G 
Sbjct: 13 GVVKWFDPVKGFGFVVADA---GGPDILLHVNVLRNFGQSSVADGARVELE-VQRTERGV 68

Query: 65 YSAENLKLVPKSSN 78
           + + L L+P  S+
Sbjct: 69 QATQVLSLLPPESD 82



 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G     DD+FLH   +  +GL +L  G+ +    ++    G  +
Sbjct: 108 VKWFDKGKGFGFANVFGRR---DDIFLHMEVLRRSGLSDLAPGEALALRVIEG-KRGHMA 163

Query: 67  AE 68
           AE
Sbjct: 164 AE 165


>gi|302386647|ref|YP_003822469.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
 gi|302197275|gb|ADL04846.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
          Length = 69

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 6/60 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDANG 63
          G +KW++ +KGYGF+    ST  G DVF+H S V       +L EG+ V +D V+ D  G
Sbjct: 6  GVVKWFDNEKGYGFL----STSEGQDVFVHHSQVKEKTHNKDLHEGESVNFD-VRKDEKG 60


>gi|218680675|ref|ZP_03528572.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894]
          Length = 192

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   GL  L  GQ+V   +  +  
Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF-GDGE 172

Query: 62  NGKYSAENLKLVPKSSN 78
            G  +AE    VP  ++
Sbjct: 173 KGLMAAEIHPDVPSPAS 189



 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G +KW++  KG+GFI P+   +   DV LH + +   G   + EG  + 
Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEGTRIV 73


>gi|1402751|gb|AAC80242.1| major cold-shock protein [Enterococcus faecalis]
          Length = 45

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +KG+GFI    S E G DVF+H SA+   G   L EGQ VT+D   +D
Sbjct: 1  EKGFGFI----SREDGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSD 44


>gi|255263765|ref|ZP_05343107.1| cold shock DNA-binding domain protein [Thalassiobium sp. R2A62]
 gi|255106100|gb|EET48774.1| cold shock DNA-binding domain protein [Thalassiobium sp. R2A62]
          Length = 166

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++P KG+GF+  +   + G D+ LH + + + G  ++ +G  +    +  +  G
Sbjct: 2  RGLVKWFDPSKGFGFVVAD---DGGPDILLHANVLRNFGQSSVADGSAIELSVIDTE-RG 57

Query: 64 KYSAENLKLVP 74
            +AE + + P
Sbjct: 58 IQAAEIITITP 68



 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G +   DD+F+H   +  +GL +L  G+ +    V     G+ +
Sbjct: 98  VKWFDKSKGFGFANVFGVS---DDIFIHVEVLRRSGLADLQYGEAIGVRVVDG-KRGRMA 153

Query: 67  AE 68
           A+
Sbjct: 154 AQ 155


>gi|319951935|ref|YP_004163202.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
 gi|319420595|gb|ADV47704.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
          Length = 63

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +++G++K++N  KG+GFIT EGS+E   D F+H S +       + EG +V ++  Q
Sbjct: 1  MNKGTVKFFNDSKGFGFITEEGSSE---DHFVHISGLVD----EIREGDVVEFELQQ 50


>gi|317491464|ref|ZP_07949900.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921011|gb|EFV42334.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 69

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KWY+  +G+G I+P    + G+D++++RS +A++    LTEGQ V +
Sbjct: 3  LKMGLVKWYSQSEGFGIISP---LDGGNDIYVNRSGIANSRKKLLTEGQRVEF 52


>gi|190891571|ref|YP_001978113.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|190696850|gb|ACE90935.1| cold shock protein [Rhizobium etli CIAT 652]
          Length = 192

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   GL  L  GQ+V   +
Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF 168



 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
          G +KW++  KG+GFI P+   +   DV LH + +   G   + EG
Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEG 69


>gi|24663131|ref|NP_524033.2| ypsilon schachtel [Drosophila melanogaster]
 gi|16769538|gb|AAL28988.1| LD37574p [Drosophila melanogaster]
 gi|23096153|gb|AAF49961.3| ypsilon schachtel [Drosophila melanogaster]
          Length = 352

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G++V +D V
Sbjct: 64  GTVKWFNVKSGYGFIN---RNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 117


>gi|254496824|ref|ZP_05109675.1| cold shock domain-contain protein CspA [Legionella drancourtii
          LLAP12]
 gi|254353951|gb|EET12635.1| cold shock domain-contain protein CspA [Legionella drancourtii
          LLAP12]
          Length = 73

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  KG+GFI      + GDD+F+H   +   G   L E   VT+
Sbjct: 7  GHVKWFNEKKGFGFII----NQQGDDIFVHYKDIQGVGFKTLHENDPVTF 52


>gi|1402741|gb|AAC80234.1| major cold-shock protein [Bacillus subtilis]
          Length = 45

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ +
Sbjct: 1  EKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQSVSFEIVEGN 44


>gi|271970081|ref|YP_003344277.1| cold-shock DNA-binding domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270513256|gb|ACZ91534.1| putative cold-shock DNA-binding domain protein [Streptosporangium
          roseum DSM 43021]
          Length = 132

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KWY+ DKG+GF+T     + G +VF+H SA+   G+ +L  GQ V +
Sbjct: 4  GKVKWYDADKGFGFLT----RDDGGEVFVHSSAL-PGGVDSLKPGQKVEF 48


>gi|241204473|ref|YP_002975569.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858363|gb|ACS56030.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 192

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   GL  L  GQ+V   +  +  
Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF-GDGE 172

Query: 62  NGKYSAENLKLVPKSSN 78
            G  +AE    VP  ++
Sbjct: 173 KGLMAAEIHPDVPSPAS 189



 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G +KW++  KG+GFI P+   +   DV LH + +   G   + EG  + 
Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEGTRIV 73


>gi|291457452|ref|ZP_06596842.1| cold-shock domain protein [Bifidobacterium breve DSM 20213]
 gi|291381287|gb|EFE88805.1| cold-shock domain protein [Bifidobacterium breve DSM 20213]
          Length = 129

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G ++W++  KGYGFIT    +E G DVFL   A+ + G+  L +G  V Y  V  D    
Sbjct: 4  GRVRWFDAAKGYGFIT----SEEGKDVFLPAQALPT-GVNTLRKGAKVEYSVV--DGRRG 56

Query: 65 YSAENLKLVPKSSN 78
            A ++KL+  S +
Sbjct: 57 PQAMDVKLIASSPS 70


>gi|195428579|ref|XP_002062350.1| GK16710 [Drosophila willistoni]
 gi|194158435|gb|EDW73336.1| GK16710 [Drosophila willistoni]
          Length = 344

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G++V +D V
Sbjct: 49  GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 102


>gi|195589720|ref|XP_002084597.1| GD12750 [Drosophila simulans]
 gi|194196606|gb|EDX10182.1| GD12750 [Drosophila simulans]
          Length = 352

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G++V +D V
Sbjct: 64  GTVKWFNVKSGYGFIN---RNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 117


>gi|209549149|ref|YP_002281066.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534905|gb|ACI54840.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 192

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   GL  L  GQ+V   +
Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF 168



 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G +KW++  KG+GFI P+   +   DV LH + +   G   + EG  + 
Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEGTRIV 73


>gi|116251862|ref|YP_767700.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256510|emb|CAK07594.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 192

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   GL  L  GQ+V   +  +  
Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF-GDGE 172

Query: 62  NGKYSAENLKLVPKSSN 78
            G  +AE    VP  ++
Sbjct: 173 KGLMAAEIHPDVPSPAS 189



 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G +KW++  KG+GFI P+   +   DV LH + +   G   + EG  + 
Sbjct: 28 GVVKWFDVAKGFGFIVPDNGLQ---DVLLHVTCLRRDGYQTILEGTRIV 73


>gi|256374634|ref|YP_003098294.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
 gi|255918937|gb|ACU34448.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
          Length = 131

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 5/53 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          V  G +KWY+ +KG+GF+T +G    G+DV++ +SA+   G+  L  GQ + +
Sbjct: 4  VPTGKVKWYDSEKGFGFVTQDG----GEDVYVRKSALPE-GVDALKAGQRIEF 51


>gi|195493731|ref|XP_002094541.1| GE20150 [Drosophila yakuba]
 gi|194180642|gb|EDW94253.1| GE20150 [Drosophila yakuba]
          Length = 353

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G++V +D V
Sbjct: 65  GTVKWFNVKSGYGFIN---RNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 118


>gi|86357508|ref|YP_469400.1| cold shock protein [Rhizobium etli CFN 42]
 gi|86281610|gb|ABC90673.1| cold shock protein [Rhizobium etli CFN 42]
          Length = 192

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   GL  L  GQ+V   +  +  
Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF-GDGE 172

Query: 62  NGKYSAENLKLVPKSSN 78
            G  +AE    VP  ++
Sbjct: 173 KGLMAAEIHPDVPSPAS 189



 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFI P+   +   DV LH + +   G   + EG  +    VQ    G 
Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEGTRIVA-LVQRRERGY 83

Query: 65 YSAENLKL 72
           + + L +
Sbjct: 84 QAFKILSM 91


>gi|113460999|ref|YP_719066.1| cold-shock DNA-binding protein family protein [Haemophilus somnus
          129PT]
 gi|170717567|ref|YP_001784653.1| cold-shock DNA-binding domain-containing protein [Haemophilus
          somnus 2336]
 gi|112823042|gb|ABI25131.1| cold-shock DNA-binding protein family [Haemophilus somnus 129PT]
 gi|168825696|gb|ACA31067.1| putative cold-shock DNA-binding domain protein [Haemophilus
          somnus 2336]
          Length = 69

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW+N  KG+GF+    S ES D DVF H S +   G  +L  GQ V  + V  D  G
Sbjct: 4  GIVKWFNNAKGFGFL----SVESSDVDVFAHYSVIEMEGYRSLKAGQKVQCEVVHGD-KG 58

Query: 64 KYSAENLKLV 73
           ++ + + +V
Sbjct: 59 SHATKIIPMV 68


>gi|222085830|ref|YP_002544361.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221723278|gb|ACM26434.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 192

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V   +
Sbjct: 117 LERALVKWFNRTKGFGFLT---RGEGTEDIFVHMETLRRFGLAELRPGQVVLVRF 168



 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFI P+   +   DV LH + +   G   + EG  +    +Q    G 
Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEGTRIVA-LIQRRERGY 83

Query: 65 YSAENLKL 72
           + + L +
Sbjct: 84 QAFKILSM 91


>gi|218462851|ref|ZP_03502942.1| cold shock protein [Rhizobium etli Kim 5]
 gi|327190806|gb|EGE57874.1| cold shock protein [Rhizobium etli CNPAF512]
          Length = 192

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   GL  L  GQ+V   +
Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF 168



 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
          G +KW++  KG+GFI P+   +   DV LH + +   G   + EG
Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEG 69


>gi|254477246|ref|ZP_05090632.1| cold shock DNA-binding domain protein [Ruegeria sp. R11]
 gi|214031489|gb|EEB72324.1| cold shock DNA-binding domain protein [Ruegeria sp. R11]
          Length = 171

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 10/78 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG---QLVTYDYVQND 60
          RG +KW++P KG+GF+    S E G D+ LH + + + G  ++ +G   +LVT+      
Sbjct: 5  RGLVKWFDPTKGFGFVV---SDEGGPDILLHVNVLRNFGQSSIADGAQVELVTH----RT 57

Query: 61 ANGKYSAENLKLVPKSSN 78
            G  + E + + P   +
Sbjct: 58 ERGVQAVEVISITPPERD 75



 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G  E   DVFLH   +  +GL  L  G+ +    ++    G+ +
Sbjct: 101 VKWFDKGKGFGFANVFGRPE---DVFLHVEVLRQSGLSELQPGEALGMRVIEGK-RGRMA 156

Query: 67  AENL 70
            E L
Sbjct: 157 VEVL 160


>gi|297158325|gb|ADI08037.1| cold shock protein [Streptomyces bingchenggensis BCW-1]
          Length = 127

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V   G+ +L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPEGVDSLKPGQRVEFGVV 51


>gi|294814134|ref|ZP_06772777.1| Cold shock protein B [Streptomyces clavuligerus ATCC 27064]
 gi|294326733|gb|EFG08376.1| Cold shock protein B [Streptomyces clavuligerus ATCC 27064]
          Length = 132

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          V  G +KW+N +KG+GF+    S + G DVF+H S+V   G+ +L  GQ V +  V
Sbjct: 6  VPTGKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPDGVDSLKPGQRVEFGVV 56


>gi|145284600|gb|ABP52047.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 26

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 4/30 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+NPDKG+GFIT    +E G DVF+H
Sbjct: 1  GKVKWFNPDKGFGFIT----SEDGQDVFVH 26


>gi|71064869|ref|YP_263596.1| guanine-specific ribonuclease [Psychrobacter arcticus 273-4]
 gi|71037854|gb|AAZ18162.1| possible guanine-specific ribonuclease with a cold-shock
          DNA-binding domain [Psychrobacter arcticus 273-4]
          Length = 247

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G IK +N DKGYGFI  +  +E   DVF H  +V  A    ++EGQ V ++  +ND 
Sbjct: 1  MQSGKIKHWNSDKGYGFIDVDNQSE---DVFFHIKSVQMAQP--ISEGQRVYFNSERNDK 55

Query: 62 NGKYSAE 68
          N   + E
Sbjct: 56 NQLRATE 62


>gi|328952681|ref|YP_004370015.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
          DSM 11109]
 gi|328453005|gb|AEB08834.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
          DSM 11109]
          Length = 67

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M +RG +K++N  KG+GFI      + G +VF+H S + S G   L E + V ++
Sbjct: 1  MKYRGKVKFFNESKGWGFI----KQDDGPEVFVHYSNIQSKGFRTLKENEEVEFE 51


>gi|302544493|ref|ZP_07296835.1| cold-shock domain family protein [Streptomyces hygroscopicus ATCC
          53653]
 gi|302462111|gb|EFL25204.1| cold-shock domain family protein [Streptomyces himastatinicus
          ATCC 53653]
          Length = 127

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V   G+ +L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPEGVDSLKPGQRVEFGVV 51


>gi|148379732|ref|YP_001254273.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933933|ref|YP_001384029.1| cold shock protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936177|ref|YP_001387571.1| cold shock protein [Clostridium botulinum A str. Hall]
 gi|148289216|emb|CAL83311.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929977|gb|ABS35477.1| cold shock protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932091|gb|ABS37590.1| cold shock protein [Clostridium botulinum A str. Hall]
          Length = 69

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
          +H G++KW++ ++GYGFI    +  +G DV++H   +    L  +L EG+ V +D V+ +
Sbjct: 3  MHTGTVKWFDNERGYGFI----AGNNGKDVYVHSMQIKEKTLNKDLHEGEEVLFDIVEKE 58


>gi|238762682|ref|ZP_04623651.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
 gi|238698987|gb|EEP91735.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
          Length = 80

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q
Sbjct: 17 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQ 67


>gi|270156922|ref|ZP_06185579.1| cold shock protein [Legionella longbeachae D-4968]
 gi|289164651|ref|YP_003454789.1| cold shock protein; Qin prophage [Legionella longbeachae NSW150]
 gi|269988947|gb|EEZ95201.1| cold shock protein [Legionella longbeachae D-4968]
 gi|288857824|emb|CBJ11670.1| cold shock protein; Qin prophage [Legionella longbeachae NSW150]
          Length = 71

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  KG+GFI      E+GDD+F+H   +   G   L E   V++
Sbjct: 7  GHVKWFNEKKGFGFII----NENGDDIFVHYKDIQGVGFKTLHENDPVSF 52


>gi|159898821|ref|YP_001545068.1| cold-shock DNA-binding domain-containing protein [Herpetosiphon
          aurantiacus ATCC 23779]
 gi|159891860|gb|ABX04940.1| cold-shock DNA-binding domain protein [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 197

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 9/75 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ----ND 60
          G++ W++P+K YGFIT    T +G  +F+HR A+   G   L EG+ V++  V+    ++
Sbjct: 7  GTVAWFDPEKSYGFIT----THAGASLFVHRRALGD-GRRWLVEGEEVSFVVVRGMKGDE 61

Query: 61 ANGKYSAENLKLVPK 75
          AN       L   P+
Sbjct: 62 ANDVLVTSALPPTPR 76


>gi|126662941|ref|ZP_01733939.1| cold shock protein [Flavobacteria bacterium BAL38]
 gi|126624599|gb|EAZ95289.1| cold shock protein [Flavobacteria bacterium BAL38]
          Length = 66

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 7/64 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K++N  KGYGFIT +   E+G D+F+H S +    + +L EG  V+Y+  +    GK
Sbjct: 4  GKVKFFNESKGYGFITDD---ETGKDIFVHASGMR---VESLNEGDAVSYEE-EEGRKGK 56

Query: 65 YSAE 68
           +A+
Sbjct: 57 VAAQ 60


>gi|325921527|ref|ZP_08183380.1| cold shock protein [Xanthomonas gardneri ATCC 19865]
 gi|325547997|gb|EGD18998.1| cold shock protein [Xanthomonas gardneri ATCC 19865]
          Length = 197

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 7/68 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQN 59
          M   G++  +NPD+G+GFITP    + GD+VF+H SA   SA    +  G+L++++ ++ 
Sbjct: 4  MRTHGTLTRWNPDRGFGFITP---AQPGDEVFVHISAFPRSADAPRI--GELISFE-IEP 57

Query: 60 DANGKYSA 67
            +G+  A
Sbjct: 58 SKDGRQQA 65


>gi|261314020|ref|ZP_05953217.1| cold-shock family protein [Brucella pinnipedialis M163/99/10]
 gi|261303046|gb|EEY06543.1| cold-shock family protein [Brucella pinnipedialis M163/99/10]
          Length = 150

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +
Sbjct: 76  LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 127


>gi|74007477|ref|XP_549034.2| PREDICTED: similar to cold shock domain protein A [Canis
          familiaris]
          Length = 315

 Score = 42.7 bits (99), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQN 59
          RGS+KW+N   GYGFI+     ++ +DVF+H++A+          ++ +G+ V +D VQ 
Sbjct: 26 RGSVKWFNVKNGYGFIS---RHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQG 82

Query: 60 D 60
          +
Sbjct: 83 E 83


>gi|330885139|gb|EGH19288.1| cold shock protein [Pseudomonas syringae pv. glycinea str. race
          4]
          Length = 36

 Score = 42.7 bits (99), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 4/40 (10%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
          +N +KG+GFITP+    SGDD+F+H  A+ S G  +L EG
Sbjct: 1  FNDEKGFGFITPQ----SGDDLFVHFKAIQSDGFKSLKEG 36


>gi|111226076|ref|YP_716870.1| CspB [Frankia alni ACN14a]
 gi|111153608|emb|CAJ65366.1| CspB [Frankia alni ACN14a]
          Length = 131

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++ DKG+GF+    S + G DVF+H++A+  AG+  L  G  V +
Sbjct: 4  GKVKWFDVDKGFGFL----SRDDGGDVFVHKAAL-PAGVERLKPGDRVEF 48


>gi|145594602|ref|YP_001158899.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440]
 gi|145303939|gb|ABP54521.1| cold-shock DNA-binding protein family [Salinispora tropica
          CNB-440]
          Length = 137

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 18/84 (21%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH-------RSAVASAGLFNLTEGQLVTY 54
          + +G+I  ++  +GYGFI P G    GDDVF+H       R AVA+        G  V+Y
Sbjct: 1  MEKGTIVRFDDVRGYGFIAPFG---GGDDVFVHANDFGDQRHAVAA--------GMRVSY 49

Query: 55 DYVQNDANGKYSAENLKLVPKSSN 78
          + VQ++   K ++  L+  P + N
Sbjct: 50 EVVQSERGLKVASVVLETAPAAPN 73


>gi|94264655|ref|ZP_01288437.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
 gi|93454886|gb|EAT05130.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
          Length = 70

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW+N  KG+GFI  E  +    DVF+H   +   G  +L +GQ V +  V+
Sbjct: 7  GKVKWFNAPKGFGFIERENDS----DVFVHYRGIKGDGYRSLQDGQEVIFSVVE 56


>gi|163731974|ref|ZP_02139420.1| cold shock protein [Roseobacter litoralis Och 149]
 gi|161394272|gb|EDQ18595.1| cold shock protein [Roseobacter litoralis Och 149]
          Length = 178

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GF+  +     G D+ LH + + + G  ++ +G  V  + VQ    G 
Sbjct: 13 GVVKWFDPVKGFGFVVADA---GGPDILLHVNVLRNFGQSSVADGARVELE-VQRTDRGV 68

Query: 65 YSAENLKLVPKSSN 78
           + + L L+P  S+
Sbjct: 69 QATQVLSLLPPDSD 82



 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G     DD+FLH   +  +GL +L  G+ +    ++    G  +
Sbjct: 108 VKWFDKGKGFGFANVFGRR---DDIFLHMEVLRRSGLSDLAPGEALALRVIEG-KRGHMA 163

Query: 67  AE 68
           AE
Sbjct: 164 AE 165


>gi|52841437|ref|YP_095236.1| cold shock domain-contain protein CspA [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
 gi|52628548|gb|AAU27289.1| cold shock domain family protein CspA [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
          Length = 79

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFI      + G+D+F+H   +   G   L E   VT++
Sbjct: 9  GHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFE 55


>gi|254706561|ref|ZP_05168389.1| cold-shock family protein [Brucella pinnipedialis M163/99/10]
          Length = 158

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +
Sbjct: 84  LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 135


>gi|145284598|gb|ABP52046.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 26

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 4/30 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+NPDKG+GFIT    +E G DVF+H
Sbjct: 1  GPVKWFNPDKGFGFIT----SEDGQDVFVH 26


>gi|259089373|ref|NP_001158512.1| Y-box binding protein [Oncorhynchus mykiss]
 gi|219665297|gb|ACL31579.1| Y-box binding protein [Oncorhynchus mykiss]
          Length = 301

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ DDVF+H++A+        L ++ +G++V +D V+ +
Sbjct: 42 GTVKWFNVRNGYGFIN---RNDTKDDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 98


>gi|114706186|ref|ZP_01439089.1| cold shock protein [Fulvimarina pelagi HTCC2506]
 gi|114539032|gb|EAU42153.1| cold shock protein [Fulvimarina pelagi HTCC2506]
          Length = 191

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
            ++KW+N  KGYGF+T   + E+ +D+F+H   +   G+  L  GQ V   Y      GK
Sbjct: 121 ATVKWFNRTKGYGFLT---TGENDEDIFIHMETLRRFGMTELRLGQEVKVRY-GIGRKGK 176

Query: 65  YSAE 68
            +AE
Sbjct: 177 MAAE 180



 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G IKW++  KG+GFI P+   +   DV +H + +   G     EG  V  + VQ    G
Sbjct: 29 GHIKWFDVAKGFGFIVPD---DESADVLIHVTCLRRDGYATALEGARVVCE-VQRSERG 83


>gi|54294149|ref|YP_126564.1| hypothetical protein lpl1213 [Legionella pneumophila str. Lens]
 gi|53753981|emb|CAH15452.1| hypothetical protein lpl1213 [Legionella pneumophila str. Lens]
          Length = 77

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFI      + G+D+F+H   +   G   L E   VT++
Sbjct: 7  GHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFE 53


>gi|302865005|ref|YP_003833642.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
 gi|302567864|gb|ADL44066.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
          27029]
          Length = 123

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KWY+  KGYGF+T    ++ G DVFL + A+  AG+ +L  GQ V +  V +    +  
Sbjct: 1  MKWYDAAKGYGFVT----SDEGGDVFLPKGAL-PAGVADLKGGQRVDFSVVDSRRGAQAM 55

Query: 67 AENLKLVPKS 76
             L   P S
Sbjct: 56 GVKLLEAPPS 65


>gi|74007475|ref|XP_549033.2| PREDICTED: similar to cold shock domain protein A [Canis
           familiaris]
          Length = 383

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 7/61 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQN 59
           RGS+KW+N   GYGFI+   + E   DVF+H++A+          ++ +G+ V +D VQ 
Sbjct: 70  RGSVKWFNVKNGYGFISRHDTQE---DVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQG 126

Query: 60  D 60
           +
Sbjct: 127 E 127


>gi|61680881|pdb|2BH8|A Chain A, Combinatorial Protein 1b11
 gi|61680882|pdb|2BH8|B Chain B, Combinatorial Protein 1b11
          Length = 101

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 3/37 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
          G +KW+N DKG+GFITP+  ++   DVF+H SA +S 
Sbjct: 19 GIVKWFNADKGFGFITPDDGSK---DVFVHFSAGSSG 52


>gi|315501502|ref|YP_004080389.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|315408121|gb|ADU06238.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
          Length = 123

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KWY+  KGYGF+T    ++ G DVFL + A+  AG+ +L  GQ V +  V +    +  
Sbjct: 1  MKWYDAAKGYGFVT----SDEGGDVFLPKGAL-PAGVADLKGGQRVDFSVVDSRRGAQAM 55

Query: 67 AENLKLVPKS 76
             L   P S
Sbjct: 56 GVKLLEAPPS 65


>gi|254393855|ref|ZP_05008963.1| cold shock protein B [Streptomyces clavuligerus ATCC 27064]
 gi|326442535|ref|ZP_08217269.1| putative cold shock protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197707450|gb|EDY53262.1| cold shock protein B [Streptomyces clavuligerus ATCC 27064]
          Length = 127

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V   G+ +L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPDGVDSLKPGQRVEFGVV 51


>gi|325286936|ref|YP_004262726.1| cold-shock DNA-binding domain-containing protein [Cellulophaga
          lytica DSM 7489]
 gi|324322390|gb|ADY29855.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM
          7489]
          Length = 63

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 7/51 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++K++N  KG+GFITP+   + G DVF+H S +       + EG  V+YD
Sbjct: 4  GTVKFFNDSKGFGFITPD---DGGKDVFVHISGLTH----EIAEGDKVSYD 47


>gi|86743101|ref|YP_483501.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3]
 gi|86569963|gb|ABD13772.1| cold-shock DNA-binding protein family [Frankia sp. CcI3]
          Length = 131

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++ DKG+GF+    S + G DVF+H++A+  AG+  L  G  V +
Sbjct: 4  GKVKWFDVDKGFGFL----SRDDGGDVFVHKAAL-PAGVDRLKPGDRVEF 48


>gi|54297162|ref|YP_123531.1| hypothetical protein lpp1207 [Legionella pneumophila str. Paris]
 gi|148358792|ref|YP_001249999.1| cold shock domain family transporter protein CspA [Legionella
          pneumophila str. Corby]
 gi|296106837|ref|YP_003618537.1| cold shock domain family protein CspA [Legionella pneumophila
          2300/99 Alcoy]
 gi|53750947|emb|CAH12358.1| hypothetical protein lpp1207 [Legionella pneumophila str. Paris]
 gi|148280565|gb|ABQ54653.1| cold shock domain family protein CspA [Legionella pneumophila
          str. Corby]
 gi|295648738|gb|ADG24585.1| cold shock domain family protein CspA [Legionella pneumophila
          2300/99 Alcoy]
 gi|307609962|emb|CBW99490.1| hypothetical protein LPW_12631 [Legionella pneumophila 130b]
          Length = 77

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFI      + G+D+F+H   +   G   L E   VT++
Sbjct: 7  GHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFE 53


>gi|325918449|ref|ZP_08180573.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325535344|gb|EGD07216.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
          Length = 57

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          N  KG+GFI    S E+G+DVF+H  A+   G  +L EGQ V++  VQ
Sbjct: 1  NDAKGFGFI----SRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQ 44


>gi|195327031|ref|XP_002030225.1| GM24682 [Drosophila sechellia]
 gi|194119168|gb|EDW41211.1| GM24682 [Drosophila sechellia]
          Length = 1378

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI    + E   DVF+H+SA+A       + ++ +G++V +D V
Sbjct: 64  GTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 117


>gi|238784838|ref|ZP_04628839.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
 gi|238714254|gb|EEQ06265.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
          Length = 70

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q
Sbjct: 7  GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQ 57


>gi|255975690|ref|ZP_05426276.1| cold shock protein [Enterococcus faecalis T2]
 gi|307277908|ref|ZP_07558992.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
 gi|255968562|gb|EET99184.1| cold shock protein [Enterococcus faecalis T2]
 gi|306505305|gb|EFM74491.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
          Length = 68

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW++  KGYGFI         D++F+H +A+   G  +L E Q V ++ ++
Sbjct: 1  MQKGIVKWFDNRKGYGFIV----YNEEDEIFVHFTAIEGDGFKSLDENQFVEFEIME 53


>gi|84515605|ref|ZP_01002967.1| cold shock DNA-binding domain protein [Loktanella vestfoldensis
          SKA53]
 gi|84510888|gb|EAQ07343.1| cold shock DNA-binding domain protein [Loktanella vestfoldensis
          SKA53]
          Length = 175

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KG+GF+  E     G D+ LH + + + G  ++ +G  +    VQ+   G
Sbjct: 13 QGQVKWFDPTKGFGFVIAE---LGGPDILLHANVLRNFGQGSVVDGSRIDL-MVQDTQRG 68

Query: 64 KYSAENLKLVPKSSN 78
            + E + + P  ++
Sbjct: 69 LQAVEVISITPPHAD 83



 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           +    +KW++  KG+GF    GS+   DDVF+H   +  +GL +L  G+ +    V  +
Sbjct: 104 IEPARVKWFDKAKGFGFANVFGSS---DDVFIHIEVLRRSGLSDLQSGEAIGLRLVDGE 159


>gi|294884847|gb|ADF47434.1| cold shock domain-containing protein A [Dugesia japonica]
          Length = 190

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 8/63 (12%)

Query: 1  MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYD 55
          +VH+  G +KWYN  KGYGFI  +   E   DVF+H+SA++        +L E + V +D
Sbjct: 11 LVHKVTGKVKWYNVKKGYGFIHRDDVDE---DVFVHQSAISRCQPGKQKSLGEDEDVLFD 67

Query: 56 YVQ 58
           V+
Sbjct: 68 VVK 70


>gi|227832587|ref|YP_002834294.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
 gi|262182930|ref|ZP_06042351.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
 gi|227453603|gb|ACP32356.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
          Length = 126

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ DKG+GF++  G     +DV++ R+ V   G+  L +GQ + +D+    A G+
Sbjct: 4  GKVKWYDADKGFGFVSNPGD----EDVYVGRN-VLPKGVDELHQGQRIEFDF----AAGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 RGPQALRV 62


>gi|254293523|ref|YP_003059546.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
 gi|254042054|gb|ACT58849.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
          Length = 69

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+H G++K+YN ++G+G IT     ++  DV    SA+   G+  + E Q V ++   N 
Sbjct: 1  MIH-GTVKYYNSEQGFGLIT---RADNEKDVRFTFSALKKLGITGIKERQKVKFETETNP 56

Query: 61 ANGKYSAENLKLV 73
            GK  A  L+LV
Sbjct: 57 DTGKVIAVTLELV 69


>gi|158423560|ref|YP_001524852.1| DNA-binding cold-shock protein [Azorhizobium caulinodans ORS 571]
 gi|158330449|dbj|BAF87934.1| DNA-binding cold-shock protein [Azorhizobium caulinodans ORS 571]
          Length = 192

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G++KW++  KGYGFI P+   + G DV +H + +   G     EG  +  + V+ 
Sbjct: 31 GAVKWFDAAKGYGFIVPD---DGGPDVLVHVTCLRRDGFTTAMEGARIVCEAVRR 82



 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
            R ++KW+N  +G+GF++     E   D+F+H   +   GL  L  GQ V   Y
Sbjct: 120 ERATVKWFNRMRGFGFLS---KGEGTPDIFVHMETLRQQGLTELRPGQSVLVRY 170


>gi|300858014|ref|YP_003782997.1| cold shock-like protein B [Corynebacterium pseudotuberculosis
          FRC41]
 gi|300685468|gb|ADK28390.1| cold shock-like protein B [Corynebacterium pseudotuberculosis
          FRC41]
 gi|302205739|gb|ADL10081.1| cold shock protein B [Corynebacterium pseudotuberculosis C231]
 gi|302330294|gb|ADL20488.1| cold shock protein B [Corynebacterium pseudotuberculosis 1002]
 gi|308275975|gb|ADO25874.1| cold shock protein B [Corynebacterium pseudotuberculosis I19]
          Length = 130

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 5/52 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G ++WY+P+KGYGF++  G     +D ++ ++ V  AG+  L +GQ + +D+
Sbjct: 4  GRVRWYDPEKGYGFVSNPGD----EDCYVGKN-VLPAGVDKLEKGQRIEFDF 50


>gi|170017486|ref|YP_001728405.1| cold shock protein [Leuconostoc citreum KM20]
 gi|169804343|gb|ACA82961.1| Cold shock protein [Leuconostoc citreum KM20]
          Length = 74

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +K +  ++GYG+ITP+     G+DVF+H + +   G   L +G+ V+Y  VQ
Sbjct: 4  GIVKIWQKERGYGYITPDAG---GEDVFVHFNGIDMPGFKALKQGEKVSYVLVQ 54


>gi|319442530|ref|ZP_07991686.1| putative cold shock protein [Corynebacterium variabile DSM 44702]
          Length = 129

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ DKG+GF++  G     DDV + RSA+   G+  L  GQ V YD V     GK
Sbjct: 4  GKVKWFDADKGFGFVSNPGY----DDVHVGRSALPE-GVTELVPGQRVEYD-VATGLRGK 57

Query: 65 YSAENLKL 72
           + E L++
Sbjct: 58 -APEALRV 64


>gi|325106181|ref|YP_004275835.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
          12145]
 gi|324975029|gb|ADY54013.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
          12145]
          Length = 63

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KG+GFITP      GDD+F+H S + +     + E  +V ++ V+N  
Sbjct: 1  MKEGKVKFFNETKGFGFITP---LNGGDDIFVHSSGLETE----IRENDVVVFE-VENGR 52

Query: 62 NGKYSAENLKL 72
           G  +A N++L
Sbjct: 53 KG-LNAVNVRL 62


>gi|23502142|ref|NP_698269.1| cold-shock family protein [Brucella suis 1330]
 gi|161619217|ref|YP_001593104.1| cold shock-like protein cspG [Brucella canis ATCC 23365]
 gi|163843529|ref|YP_001627933.1| cold shock-like protein cspG [Brucella suis ATCC 23445]
 gi|254704543|ref|ZP_05166371.1| cold shock-like protein cspG [Brucella suis bv. 3 str. 686]
 gi|260566213|ref|ZP_05836683.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
           4 str. 40]
 gi|261755227|ref|ZP_05998936.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|23348105|gb|AAN30184.1| cold-shock family protein [Brucella suis 1330]
 gi|161336028|gb|ABX62333.1| Cold shock-like protein cspG [Brucella canis ATCC 23365]
 gi|163674252|gb|ABY38363.1| Cold shock-like protein cspG [Brucella suis ATCC 23445]
 gi|260155731|gb|EEW90811.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
           4 str. 40]
 gi|261744980|gb|EEY32906.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
           3 str. 686]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +
Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169


>gi|23336360|ref|ZP_00121581.1| COG1278: Cold shock proteins [Bifidobacterium longum DJO10A]
 gi|23464635|ref|NP_695238.1| cold shock protein [Bifidobacterium longum NCC2705]
 gi|189438870|ref|YP_001953951.1| cold shock protein [Bifidobacterium longum DJO10A]
 gi|227546733|ref|ZP_03976782.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
          55813]
 gi|239620709|ref|ZP_04663740.1| cold shock protein [Bifidobacterium longum subsp. infantis CCUG
          52486]
 gi|296454603|ref|YP_003661746.1| putative cold-shock DNA-binding domain-containing protein
          [Bifidobacterium longum subsp. longum JDM301]
 gi|317481709|ref|ZP_07940741.1| cold-shock' DNA-binding domain-containing protein
          [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689671|ref|YP_004209405.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F]
 gi|322691632|ref|YP_004221202.1| cold shock protein [Bifidobacterium longum subsp. longum JCM
          1217]
 gi|23325192|gb|AAN23874.1| cold shock protein [Bifidobacterium longum NCC2705]
 gi|32700058|gb|AAP86682.1| cold shock protein B [Bifidobacterium longum subsp. infantis]
 gi|189427305|gb|ACD97453.1| Cold shock protein [Bifidobacterium longum DJO10A]
 gi|227212695|gb|EEI80576.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
          55813]
 gi|239516285|gb|EEQ56152.1| cold shock protein [Bifidobacterium longum subsp. infantis CCUG
          52486]
 gi|291516230|emb|CBK69846.1| cold-shock DNA-binding protein family [Bifidobacterium longum
          subsp. longum F8]
 gi|296184034|gb|ADH00916.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
          longum subsp. longum JDM301]
 gi|316916823|gb|EFV38213.1| cold-shock' DNA-binding domain-containing protein
          [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456488|dbj|BAJ67110.1| cold shock protein [Bifidobacterium longum subsp. longum JCM
          1217]
 gi|320461007|dbj|BAJ71627.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F]
          Length = 129

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G ++W++  KGYGFIT    +E G DVFL   A+ + G+  L +G  V Y  V  D    
Sbjct: 4  GRVRWFDAAKGYGFIT----SEEGKDVFLPAQALPT-GVTTLRKGAKVEYSVV--DGRRG 56

Query: 65 YSAENLKLV 73
            A +++L+
Sbjct: 57 PQAMDVRLI 65


>gi|254702002|ref|ZP_05163830.1| cold-shock family protein [Brucella suis bv. 5 str. 513]
 gi|261752569|ref|ZP_05996278.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261742322|gb|EEY30248.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv.
           5 str. 513]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +
Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169



 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G IKW++  KGYGFI P+    +  D+ LH +++   G     EG  +  +    D
Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARIVCEVRHGD 81


>gi|301791962|ref|XP_002930949.1| PREDICTED: nuclease-sensitive element-binding protein 1-like,
           partial [Ailuropoda melanoleuca]
          Length = 416

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQN 59
           RGS+KW+N   GYGFI+     ++ +DVF+H+ A+          ++ +G+ V +D VQ 
Sbjct: 70  RGSVKWFNVKNGYGFIS---RHDTQEDVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQG 126

Query: 60  D 60
           +
Sbjct: 127 E 127


>gi|254464203|ref|ZP_05077614.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          Y4I]
 gi|206685111|gb|EDZ45593.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          Y4I]
          Length = 179

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KGYGF+    S E G D+ LH + + + G  ++ +G  +          G
Sbjct: 12 QGLVKWFDPAKGYGFVV---SDEGGPDILLHVNVLRNFGQSSVADGARIEI-VTHQTGRG 67

Query: 64 KYSAENLKLVPKSSN 78
            + E L ++P   +
Sbjct: 68 VQAVEVLSIMPPERD 82



 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G    G+DVFLH   +  +GL +L  G+ +    + +   G+ +
Sbjct: 108 VKWFDKGKGFGFANVFGR---GEDVFLHVEVLRQSGLADLQPGEALAMRVI-DGKRGRMA 163

Query: 67  AENL----KLVPKSSN 78
            E L     L+P S++
Sbjct: 164 VEVLAWEAALMPGSAD 179


>gi|256061344|ref|ZP_05451488.1| cold-shock family protein [Brucella neotomae 5K33]
 gi|261325345|ref|ZP_05964542.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae
           5K33]
 gi|261301325|gb|EEY04822.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae
           5K33]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +
Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169



 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G IKW++  KGYGFI P+    +  D+ LH +++   G     EG  V  +    D
Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARVVCEVRHGD 81


>gi|254298844|ref|ZP_04966294.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
 gi|157809241|gb|EDO86411.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
          Length = 52

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G +KW+N  KG+GFIT   S   G+D+F H S +   G   L E Q V+
Sbjct: 4  GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMEGFKTLKENQRVS 49


>gi|62290174|ref|YP_221967.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82700096|ref|YP_414670.1| cold shock DNA-binding domain-containing protein [Brucella
           melitensis biovar Abortus 2308]
 gi|189024409|ref|YP_001935177.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
 gi|237815683|ref|ZP_04594680.1| Cold shock-like protein cspG [Brucella abortus str. 2308 A]
 gi|254689477|ref|ZP_05152731.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 6 str.
           870]
 gi|254697615|ref|ZP_05159443.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730506|ref|ZP_05189084.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 4 str.
           292]
 gi|256257725|ref|ZP_05463261.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 9 str.
           C68]
 gi|260546718|ref|ZP_05822457.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
           NCTC 8038]
 gi|260755001|ref|ZP_05867349.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260758217|ref|ZP_05870565.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260762044|ref|ZP_05874387.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260884011|ref|ZP_05895625.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297248567|ref|ZP_06932285.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv.
           5 str. B3196]
 gi|62196306|gb|AAX74606.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616197|emb|CAJ11240.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus
           2308]
 gi|189019981|gb|ACD72703.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
 gi|237788981|gb|EEP63192.1| Cold shock-like protein cspG [Brucella abortus str. 2308 A]
 gi|260095768|gb|EEW79645.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
           NCTC 8038]
 gi|260668535|gb|EEX55475.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672476|gb|EEX59297.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260675109|gb|EEX61930.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873539|gb|EEX80608.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297175736|gb|EFH35083.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv.
           5 str. B3196]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +
Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169



 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G IKW++  KGYGFI P+    +  D+ LH +++   G     EG  +  +    D
Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARIVCEVRHGD 81


>gi|114798263|ref|YP_760667.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
 gi|114738437|gb|ABI76562.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
          Length = 175

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG--DDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G IKW++  KGYGFI  E S+E+    DV LH S +   G     EG  +  D V+ +
Sbjct: 23 GRIKWFDSAKGYGFIVAESSSEADMTGDVLLHISCLRDYGENYADEGAKIVCDAVRKE 80



 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           ++KW+N  +GYGF+  +G      D+F+H  A   AG  ++  G  +
Sbjct: 112 TLKWFNRTRGYGFVLRDGQE---TDIFVHAVAFRKAGYEDIEPGTRI 155


>gi|302383024|ref|YP_003818847.1| cold-shock DNA-binding domain protein [Brevundimonas
          subvibrioides ATCC 15264]
 gi|302193652|gb|ADL01224.1| cold-shock DNA-binding domain protein [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 186

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 5  GSIKWYNPDKGYGFITPE--GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G +KW++P KGYGFI P+  G T+   D+ LH S++  +G     EG  +  D  + 
Sbjct: 17 GRVKWFDPGKGYGFIVPDDPGQTDH-KDILLHISSLRDSGRDLAGEGATIECDCARR 72



 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           ++KW+N  KGYGF+  E  T+ G D+F+H   +   GL +L  G+ V   +
Sbjct: 123 TVKWFNRTKGYGFVVRE--TDPG-DIFVHIETLRRCGLDDLVPGETVAVRF 170


>gi|254693964|ref|ZP_05155792.1| Cold shock-like protein cspG [Brucella abortus bv. 3 str. Tulya]
 gi|261214256|ref|ZP_05928537.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260915863|gb|EEX82724.1| cold-shock DNA-binding domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +
Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169



 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G IKW++  KGYGFI P+    +  D+ LH +++   G     EG  +  +    D
Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARIVCEVRHGD 81


>gi|270284256|ref|ZP_06193907.1| cold-shock domain protein [Bifidobacterium gallicum DSM 20093]
 gi|270277415|gb|EFA23269.1| cold-shock domain protein [Bifidobacterium gallicum DSM 20093]
          Length = 151

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G I+WY+ +KGYGFI      E G DVFL   A+  AG+  L +G  V Y  +
Sbjct: 26 GKIRWYDANKGYGFI----ENEEGKDVFLPAMAL-PAGVTTLRKGTKVEYSVI 73


>gi|148559681|ref|YP_001259182.1| cold-shock family protein [Brucella ovis ATCC 25840]
 gi|225627734|ref|ZP_03785771.1| Cold shock-like protein cspG [Brucella ceti str. Cudo]
 gi|254710329|ref|ZP_05172140.1| cold-shock family protein [Brucella pinnipedialis B2/94]
 gi|254714325|ref|ZP_05176136.1| cold-shock family protein [Brucella ceti M644/93/1]
 gi|254717224|ref|ZP_05179035.1| cold-shock family protein [Brucella ceti M13/05/1]
 gi|254719316|ref|ZP_05181127.1| cold-shock family protein [Brucella sp. 83/13]
 gi|256031823|ref|ZP_05445437.1| cold-shock family protein [Brucella pinnipedialis M292/94/1]
 gi|256160002|ref|ZP_05457711.1| cold-shock family protein [Brucella ceti M490/95/1]
 gi|256255223|ref|ZP_05460759.1| cold-shock family protein [Brucella ceti B1/94]
 gi|256369687|ref|YP_003107197.1| cold-shock family protein [Brucella microti CCM 4915]
 gi|260168957|ref|ZP_05755768.1| cold-shock family protein [Brucella sp. F5/99]
 gi|261219042|ref|ZP_05933323.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261222420|ref|ZP_05936701.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
           B1/94]
 gi|261317893|ref|ZP_05957090.1| cold-shock DNA-binding domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261322102|ref|ZP_05961299.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261758450|ref|ZP_06002159.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
           F5/99]
 gi|265984317|ref|ZP_06097052.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
           83/13]
 gi|265988922|ref|ZP_06101479.1| cold-shock DNA-binding domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|265998387|ref|ZP_06110944.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
           M490/95/1]
 gi|294852602|ref|ZP_06793275.1| cold shock protein [Brucella sp. NVSL 07-0026]
 gi|306839091|ref|ZP_07471908.1| cold-shock family protein [Brucella sp. NF 2653]
 gi|306840269|ref|ZP_07473043.1| cold-shock family protein [Brucella sp. BO2]
 gi|306844169|ref|ZP_07476762.1| cold-shock family protein [Brucella sp. BO1]
 gi|148370938|gb|ABQ60917.1| cold-shock family protein [Brucella ovis ATCC 25840]
 gi|225617739|gb|EEH14784.1| Cold shock-like protein cspG [Brucella ceti str. Cudo]
 gi|255999849|gb|ACU48248.1| cold-shock family protein [Brucella microti CCM 4915]
 gi|260921004|gb|EEX87657.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
           B1/94]
 gi|260924131|gb|EEX90699.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294792|gb|EEX98288.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261297116|gb|EEY00613.1| cold-shock DNA-binding domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261738434|gb|EEY26430.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
           F5/99]
 gi|262552855|gb|EEZ08845.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
           M490/95/1]
 gi|264661119|gb|EEZ31380.1| cold-shock DNA-binding domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|264662909|gb|EEZ33170.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
           83/13]
 gi|294821191|gb|EFG38190.1| cold shock protein [Brucella sp. NVSL 07-0026]
 gi|306275444|gb|EFM57181.1| cold-shock family protein [Brucella sp. BO1]
 gi|306289796|gb|EFM60978.1| cold-shock family protein [Brucella sp. BO2]
 gi|306405638|gb|EFM61900.1| cold-shock family protein [Brucella sp. NF 2653]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +
Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169



 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G IKW++  KGYGFI P+    +  D+ LH +++   G     EG  +  +    D
Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARIVCEVRHGD 81


>gi|329850706|ref|ZP_08265551.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
 gi|328841021|gb|EGF90592.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
          Length = 187

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 5  GSIKWYNPDKGYGFITPEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G +KW++  KGYGFI P+ +T  S  DV LH S++   G  +  EG  +T
Sbjct: 20 GHVKWFDAAKGYGFIVPQDATLTSTRDVLLHISSLRDLGRDSAHEGAKIT 69



 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
            +IKW+N  KGYGF+   G+  +  D+F+H   +   GL ++ +G  +   +
Sbjct: 121 ATIKWFNRTKGYGFVV-RGNDPT--DIFIHIETLRRYGLEDVQQGDTIMVRF 169


>gi|238750463|ref|ZP_04611964.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380]
 gi|238790115|ref|ZP_04633892.1| Cold shock-like protein cspI [Yersinia frederiksenii ATCC 33641]
 gi|238794420|ref|ZP_04638030.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
 gi|238711394|gb|EEQ03611.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380]
 gi|238721784|gb|EEQ13447.1| Cold shock-like protein cspI [Yersinia frederiksenii ATCC 33641]
 gi|238726215|gb|EEQ17759.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
          Length = 66

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q
Sbjct: 3  GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQ 53


>gi|325287795|ref|YP_004263585.1| cold-shock DNA-binding domain-containing protein [Cellulophaga
          lytica DSM 7489]
 gi|324323249|gb|ADY30714.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM
          7489]
          Length = 63

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KG+GFIT EG  +   D F+H S +       + EG +V YD    + N 
Sbjct: 3  KGTVKFFNDTKGFGFITEEGVEK---DHFVHISGLVD----EIREGDVVEYDL--QEGNK 53

Query: 64 KYSAENLKLV 73
            +A N+K++
Sbjct: 54 GLNAVNVKVI 63


>gi|163746554|ref|ZP_02153912.1| cold shock protein [Oceanibulbus indolifex HEL-45]
 gi|161380439|gb|EDQ04850.1| cold shock protein [Oceanibulbus indolifex HEL-45]
          Length = 186

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GF+  +     G DV LH + + + G  ++ +G  +T    Q D  G 
Sbjct: 25 GVVKWFDPVKGFGFVVADA---GGSDVLLHVNVLRNFGQSSIADGARITIRVQQTD-RGA 80

Query: 65 YSAENLKLVP 74
           + E L + P
Sbjct: 81 QAVEVLFIEP 90



 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G  E   DVFLH   +  +GL +L  G+ +    +  D  G  +
Sbjct: 119 VKWFDKAKGFGFANVFGRAE---DVFLHIDVLRQSGLCDLQPGEALAMRVIVGD-RGHLA 174

Query: 67  AE 68
           AE
Sbjct: 175 AE 176


>gi|17987014|ref|NP_539648.1| cold shock protein [Brucella melitensis bv. 1 str. 16M]
 gi|225852761|ref|YP_002732994.1| cold shock-like protein CspG [Brucella melitensis ATCC 23457]
 gi|256044907|ref|ZP_05447811.1| Cold shock-like protein cspG [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113823|ref|ZP_05454616.1| Cold shock-like protein cspG [Brucella melitensis bv. 3 str. Ether]
 gi|256263754|ref|ZP_05466286.1| cold-shock DNA-binding domain-containing protein [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260565491|ref|ZP_05835975.1| cold-shock DNA-binding domain-containing protein [Brucella
           melitensis bv. 1 str. 16M]
 gi|265991335|ref|ZP_06103892.1| cold-shock DNA-binding domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265995172|ref|ZP_06107729.1| cold-shock DNA-binding domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|17982667|gb|AAL51912.1| cold shock protein [Brucella melitensis bv. 1 str. 16M]
 gi|225641126|gb|ACO01040.1| Cold shock-like protein cspG [Brucella melitensis ATCC 23457]
 gi|260151559|gb|EEW86653.1| cold-shock DNA-binding domain-containing protein [Brucella
           melitensis bv. 1 str. 16M]
 gi|262766285|gb|EEZ12074.1| cold-shock DNA-binding domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|263002119|gb|EEZ14694.1| cold-shock DNA-binding domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263093812|gb|EEZ17817.1| cold-shock DNA-binding domain-containing protein [Brucella
           melitensis bv. 2 str. 63/9]
 gi|326409287|gb|ADZ66352.1| cold shock-like protein CspG [Brucella melitensis M28]
 gi|326538998|gb|ADZ87213.1| cold shock-like protein cspG [Brucella melitensis M5-90]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +
Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169



 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G IKW++  KGYGFI P+    +  D+ LH +++   G     EG  +  +    D
Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARIVCEVRHGD 81


>gi|302392725|ref|YP_003828545.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
 gi|302204802|gb|ADL13480.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
          Length = 67

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 4/46 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
          M+  G++KW++ +KG+GFI         DDVF+H SA+A  G  +L
Sbjct: 1  MILSGTVKWFDSNKGFGFI----ERPDEDDVFVHYSAIAEDGFKDL 42


>gi|161528035|ref|YP_001581861.1| cold-shock DNA-binding domain-containing protein [Nitrosopumilus
          maritimus SCM1]
 gi|160339336|gb|ABX12423.1| cold-shock DNA-binding domain protein [Nitrosopumilus maritimus
          SCM1]
          Length = 63

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 8/54 (14%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N  KG+GFI  EG    GDD+F+H++ V   G  N  EG  V ++
Sbjct: 1  MEQGTVKWFNRTKGFGFIEREG----GDDLFVHKTDV--DGFIN--EGDKVEFE 46


>gi|119503292|ref|ZP_01625376.1| cold shock protein, CspA family-like protein [marine gamma
           proteobacterium HTCC2080]
 gi|119460938|gb|EAW42029.1| cold shock protein, CspA family-like protein [marine gamma
           proteobacterium HTCC2080]
          Length = 138

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           H G+IKW+N  KG+GFI      + G +VF+H   V      ++ +GQ V Y    +D  
Sbjct: 74  HEGNIKWFNATKGFGFIV----GDDGAEVFVHYRNVEGLTKRSIKQGQRVAYSVRASDRG 129

Query: 63  GKYSAENLKLV 73
            +  AE +K V
Sbjct: 130 PQ--AEGVKAV 138


>gi|307327750|ref|ZP_07606934.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306886648|gb|EFN17650.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 127

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H S+V   G+  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPEGVDALKPGQRVEFGVV 51


>gi|259507144|ref|ZP_05750044.1| cold-shock domain family protein [Corynebacterium efficiens
          YS-314]
 gi|259165267|gb|EEW49821.1| cold-shock domain family protein [Corynebacterium efficiens
          YS-314]
          Length = 122

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 9/66 (13%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KWY+P++G+GF+    S   G+D F+ +  V   G+  L +GQ + +D+    A G+  
Sbjct: 1  MKWYDPERGFGFV----SNPGGEDCFVGKQ-VLPKGVTELHQGQRIEFDF----AAGRKG 51

Query: 67 AENLKL 72
           + L++
Sbjct: 52 PQALRV 57


>gi|227504265|ref|ZP_03934314.1| cold shock protein [Corynebacterium striatum ATCC 6940]
 gi|227199152|gb|EEI79200.1| cold shock protein [Corynebacterium striatum ATCC 6940]
          Length = 126

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ DKG+GF++  G     +DV++ R+ V   G+  L +GQ + +D+    A G+
Sbjct: 4  GKVKWFDADKGFGFVSNPGD----EDVYVGRN-VLPEGVDELVQGQRIEFDF----AAGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 RGPQALRV 62


>gi|157118310|ref|XP_001653164.1| Y-box binding protein [Aedes aegypti]
 gi|108883287|gb|EAT47512.1| Y-box binding protein [Aedes aegypti]
          Length = 304

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
          G +KW+N   GYGFI   G T+  +DVF+H+SA+A       + ++ +G++V +D V
Sbjct: 17 GVVKWFNVKSGYGFIN-RGDTQ--EDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 70


>gi|22125131|ref|NP_668554.1| cold shock protein [Yersinia pestis KIM 10]
 gi|45442244|ref|NP_993783.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
 gi|21957990|gb|AAM84805.1|AE013726_8 homolog of Salmonella cold shock protein [Yersinia pestis KIM 10]
 gi|45437108|gb|AAS62660.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
          Length = 80

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q
Sbjct: 17 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQ 67


>gi|108804086|ref|YP_644023.1| cold-shock DNA-binding protein family protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765329|gb|ABG04211.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus DSM
           9941]
          Length = 197

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
            +G +KW++P+KGYGF+   G    G+D+F+H S V      +L +G  V Y+  +N+
Sbjct: 134 EQGRVKWFDPEKGYGFLVRPG----GEDLFVHHSEV-EGDASSLGQGVEVEYEVGRNE 186


>gi|3821913|gb|AAC69698.1| major cold shock protein [Lactococcus lactis subsp. lactis]
 gi|3821917|gb|AAC69700.1| major cold shock protein [Lactococcus lactis subsp. cremoris]
          Length = 50

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 4/42 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          KG+GFIT    +E G DVF H S + ++G   L EGQ VT+D
Sbjct: 1  KGFGFIT----SEDGQDVFAHFSQIQTSGFKTLDEGQKVTFD 38


>gi|291390788|ref|XP_002711897.1| PREDICTED: cold shock domain protein A short-like [Oryctolagus
           cuniculus]
          Length = 784

 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
           G++KW+N  KGYGFI    S E   DVF+H +A+        L ++ +G+ V  D V+
Sbjct: 572 GTVKWFNVKKGYGFIHRHDSKE---DVFVHHTAITKNNPRKYLHSVGDGETVELDVVE 626


>gi|184201477|ref|YP_001855684.1| cold shock protein [Kocuria rhizophila DC2201]
 gi|183581707|dbj|BAG30178.1| cold shock protein [Kocuria rhizophila DC2201]
          Length = 127

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 9/66 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ DKG+GF+    +T+ G +VFLH SA+   G+  +  G  + +      A+GK
Sbjct: 4  GKVKWFDADKGFGFL----ATDDGQEVFLHSSALPR-GVTTVKPGTRMDFGI----ADGK 54

Query: 65 YSAENL 70
            A+ L
Sbjct: 55 RGAQAL 60


>gi|71281569|ref|YP_266916.1| cold shock DNA-binding domain-containing protein [Colwellia
          psychrerythraea 34H]
 gi|71147309|gb|AAZ27782.1| cold-shock DNA-binding domain family protein [Colwellia
          psychrerythraea 34H]
          Length = 201

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 10/65 (15%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE--GQLVTYDYVQNDANGK 64
          I+W N DK +GFITP G   SGD +F+H++A+ +    N T     ++++  +Q D  G+
Sbjct: 8  IRW-NTDKAFGFITPNG---SGDTIFIHKTALKNR---NRTPKINDIISFSVIQ-DNQGR 59

Query: 65 YSAEN 69
          Y A+ 
Sbjct: 60 YCADQ 64


>gi|305665589|ref|YP_003861876.1| hypothetical protein FB2170_04800 [Maribacter sp. HTCC2170]
 gi|88710345|gb|EAR02577.1| hypothetical protein FB2170_04800 [Maribacter sp. HTCC2170]
          Length = 64

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 6/51 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++K++N  KGYGFIT +   E+G D+F+H +A+       L EG  V Y+
Sbjct: 3  GTVKFFNESKGYGFITND---ETGSDIFVHATALNGV---ELKEGDKVEYE 47


>gi|312138422|ref|YP_004005758.1| cold shock protein [Rhodococcus equi 103S]
 gi|311887761|emb|CBH47073.1| cold shock protein [Rhodococcus equi 103S]
          Length = 147

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ +KG+GF+    S E G+DV++  SA+    +  L  GQ V +D     A
Sbjct: 11 VPTGKVKWYDVEKGFGFL----SQEEGEDVYVRASAL-PGDVDGLKAGQRVEFDM----A 61

Query: 62 NGKYSAENLKL 72
           G+   + LK+
Sbjct: 62 AGRRGPQALKV 72


>gi|260433622|ref|ZP_05787593.1| cold shock DNA-binding domain protein [Silicibacter
          lacuscaerulensis ITI-1157]
 gi|260417450|gb|EEX10709.1| cold shock DNA-binding domain protein [Silicibacter
          lacuscaerulensis ITI-1157]
          Length = 175

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
          RG +KW++P KGYGF+    S E G D+ LH + + + G  ++ +G
Sbjct: 12 RGHVKWFDPSKGYGFVV---SDEGGPDILLHVNVLRNFGQSSVADG 54



 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G +E   DVFLH   +  +GL +L  G+ +    V +   G+ +
Sbjct: 108 VKWFDKAKGFGFANVFGRSE---DVFLHIEVLRRSGLADLQPGEALAM-RVIDGKRGRMA 163

Query: 67  AENL 70
           A+ L
Sbjct: 164 AQVL 167


>gi|325674581|ref|ZP_08154268.1| cold-shock domain family protein [Rhodococcus equi ATCC 33707]
 gi|325554167|gb|EGD23842.1| cold-shock domain family protein [Rhodococcus equi ATCC 33707]
          Length = 140

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ +KG+GF+    S E G+DV++  SA+    +  L  GQ V +D     A
Sbjct: 4  VPTGKVKWYDVEKGFGFL----SQEEGEDVYVRASAL-PGDVDGLKAGQRVEFDM----A 54

Query: 62 NGKYSAENLKL 72
           G+   + LK+
Sbjct: 55 AGRRGPQALKV 65


>gi|317154064|ref|YP_004122112.1| Cold-shock protein DNA-binding protein [Desulfovibrio aespoeensis
          Aspo-2]
 gi|316944315|gb|ADU63366.1| Cold-shock protein DNA-binding protein [Desulfovibrio aespoeensis
          Aspo-2]
          Length = 76

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          M   G + W+N  KG+GFIT     + G DVF+H + +   G  +L  G+ V+Y
Sbjct: 1  MRREGKVTWFNDKKGFGFIT----GDDGLDVFVHYTEIVRDGFQSLEPGERVSY 50


>gi|257387598|ref|YP_003177371.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
 gi|257169905|gb|ACV47664.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
          Length = 64

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++ ++N   GYGFI  E + E   DVF H   +      +L EGQ V +D VQ D   +
Sbjct: 4  GTVDFFNDTGGYGFIDTEDADE---DVFFHMEDIGGP---DLEEGQEVEFDIVQADKGPR 57

Query: 65 YSAENL 70
            AENL
Sbjct: 58 --AENL 61


>gi|238796661|ref|ZP_04640167.1| Cold shock-like protein cspB [Yersinia mollaretii ATCC 43969]
 gi|238719392|gb|EEQ11202.1| Cold shock-like protein cspB [Yersinia mollaretii ATCC 43969]
          Length = 66

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q
Sbjct: 3  GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTEYKTLDEGQNVEFSIEQ 53


>gi|150017771|ref|YP_001310025.1| cold-shock DNA-binding domain-containing protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|149904236|gb|ABR35069.1| putative cold-shock DNA-binding domain protein [Clostridium
          beijerinckii NCIMB 8052]
          Length = 63

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 7/51 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++K++N +KG+GFI  EG      DVF+H S+++    F++ EG  V +D
Sbjct: 4  GTVKFFNSEKGFGFIEVEGE----KDVFVHSSSLSG---FSIQEGDKVQFD 47


>gi|239834349|ref|ZP_04682677.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301]
 gi|239822412|gb|EEQ93981.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301]
          Length = 69

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 19 ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
          I PE   +   D F+H SAV  AG+  L EGQ V+++ V +  +GK +A+NL+
Sbjct: 18 IQPE---DGSPDEFVHISAVERAGMHTLNEGQKVSFELVADRRSGKKAADNLQ 67


>gi|157963490|ref|YP_001503524.1| cold-shock DNA-binding domain-containing protein [Shewanella
          pealeana ATCC 700345]
 gi|157848490|gb|ABV88989.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
          700345]
          Length = 188

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ RG +  +N ++G+GFI PE  T +  DVF+H SA+       +   Q++ +   Q D
Sbjct: 2  LMERGVLVRWNEERGFGFIKPE--TTNAKDVFIHISALKHMARKPVVGDQILFHSERQAD 59

Query: 61 ANGKYSAENLKLVPKSSN 78
             K S  N++ V   +N
Sbjct: 60 GKLKASKANIEGVAVVAN 77


>gi|218961622|ref|YP_001741397.1| cold-shock domain family protein [Candidatus Cloacamonas
          acidaminovorans]
 gi|167730279|emb|CAO81191.1| cold-shock domain family protein [Candidatus Cloacamonas
          acidaminovorans]
          Length = 74

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG---LFNLTEGQLVTYDYVQND 60
          +G +KW+N +KGYGFI     T+   + F+H  ++ +     L  L + +LVT+D ++ D
Sbjct: 6  KGKVKWFNKNKGYGFII----TDDNKEYFVHWKSIVTNSPRELKVLEQDELVTFDLMETD 61


>gi|300779123|ref|ZP_07088981.1| CspA family cold shock transcriptional regulator
          [Chryseobacterium gleum ATCC 35910]
 gi|300504633|gb|EFK35773.1| CspA family cold shock transcriptional regulator
          [Chryseobacterium gleum ATCC 35910]
          Length = 64

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 8/71 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFI+P   T+   D+F+H S + S    ++ E   V +D  ++D 
Sbjct: 1  MQQGTVKFFNEAKGFGFISP---TDGSKDIFVHSSGLDSR---SIRENDKVVFDVQKSDK 54

Query: 62 NGKYSAENLKL 72
              +A N+KL
Sbjct: 55 G--LNAVNVKL 63


>gi|83814746|ref|YP_445845.1| hypothetical protein SRU_1727 [Salinibacter ruber DSM 13855]
 gi|294507754|ref|YP_003571812.1| cold shock-like protein [Salinibacter ruber M8]
 gi|83756140|gb|ABC44253.1| conserved domain protein [Salinibacter ruber DSM 13855]
 gi|294344082|emb|CBH24860.1| cold shock-like protein [Salinibacter ruber M8]
          Length = 71

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW++ +KGYGFI  E   E   D+F+H S + + G  +L E   V +
Sbjct: 7  GTVKWFSNEKGYGFIVAEDRDE---DLFVHYSEIDTEGFKSLDEDDRVEF 53


>gi|295704910|ref|YP_003597985.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294802569|gb|ADF39635.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 72

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 4/42 (9%)

Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          GFI  EG    GDDVF+H S++ S G  +L EGQ VT+D  Q
Sbjct: 21 GFIEIEG----GDDVFVHFSSIQSEGFKSLDEGQKVTFDIEQ 58


>gi|224370359|ref|YP_002604523.1| CspB2 [Desulfobacterium autotrophicum HRM2]
 gi|223693076|gb|ACN16359.1| CspB2 [Desulfobacterium autotrophicum HRM2]
          Length = 66

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI      E+G DV++H + + S     L++G  V+++ ++N   G
Sbjct: 3  EGIVKWFNDSKGFGFI----EQENGPDVYVHHTGINSTSFKPLSQGDRVSFE-IENGQKG 57

Query: 64 KYSA 67
            + 
Sbjct: 58 TVAV 61


>gi|254514075|ref|ZP_05126136.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR5-3]
 gi|219676318|gb|EED32683.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR5-3]
          Length = 70

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFIT E       DVF+H  ++   G   L EG+ V +   +
Sbjct: 7  GTVKWFNNAKGFGFITGESFD---GDVFVHFRSIVGDGFRTLNEGEEVEFTLTE 57


>gi|51597265|ref|YP_071456.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
 gi|108808380|ref|YP_652296.1| cold shock protein [Yersinia pestis Antiqua]
 gi|108811305|ref|YP_647072.1| cold shock protein [Yersinia pestis Nepal516]
 gi|123441290|ref|YP_001005277.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|145598899|ref|YP_001162975.1| cold shock protein [Yersinia pestis Pestoides F]
 gi|149365449|ref|ZP_01887484.1| cold shock protein [Yersinia pestis CA88-4125]
 gi|153949592|ref|YP_001400051.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
 gi|162420073|ref|YP_001607873.1| cold shock protein [Yersinia pestis Angola]
 gi|165925316|ref|ZP_02221148.1| cold shock protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165939935|ref|ZP_02228473.1| cold shock protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008469|ref|ZP_02229367.1| cold shock protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212413|ref|ZP_02238448.1| cold shock protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167398538|ref|ZP_02304062.1| cold shock protein [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167421189|ref|ZP_02312942.1| cold shock protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167423656|ref|ZP_02315409.1| cold shock protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|170023370|ref|YP_001719875.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186896369|ref|YP_001873481.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|218929733|ref|YP_002347608.1| cold shock protein [Yersinia pestis CO92]
 gi|229838213|ref|ZP_04458372.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895592|ref|ZP_04510763.1| cold shock protein [Yersinia pestis Pestoides A]
 gi|229898778|ref|ZP_04513923.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
          195]
 gi|229901551|ref|ZP_04516673.1| cold shock protein [Yersinia pestis Nepal516]
 gi|270489738|ref|ZP_06206812.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|332162760|ref|YP_004299337.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|61221540|sp|P0A362|CSPB_YERPE RecName: Full=Cold shock-like protein CspB
 gi|61221541|sp|P0A363|CSPB_YEREN RecName: Full=Cold shock-like protein CspB
 gi|3249024|gb|AAC24037.1| cold shock protein CspB [Yersinia enterocolitica]
 gi|51590547|emb|CAH22188.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
 gi|108774953|gb|ABG17472.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108780293|gb|ABG14351.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
 gi|115348344|emb|CAL21278.1| cold shock protein [Yersinia pestis CO92]
 gi|122088251|emb|CAL11041.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|145210595|gb|ABP40002.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|149291862|gb|EDM41936.1| cold shock protein [Yersinia pestis CA88-4125]
 gi|152961087|gb|ABS48548.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
 gi|162352888|gb|ABX86836.1| cold shock protein [Yersinia pestis Angola]
 gi|165912154|gb|EDR30793.1| cold shock protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922923|gb|EDR40074.1| cold shock protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165992851|gb|EDR45152.1| cold shock protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206344|gb|EDR50824.1| cold shock protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166960678|gb|EDR56699.1| cold shock protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167051042|gb|EDR62450.1| cold shock protein [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167057826|gb|EDR67572.1| cold shock protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|169749904|gb|ACA67422.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186699395|gb|ACC90024.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229681480|gb|EEO77574.1| cold shock protein [Yersinia pestis Nepal516]
 gi|229688326|gb|EEO80397.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
          195]
 gi|229694579|gb|EEO84626.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701398|gb|EEO89426.1| cold shock protein [Yersinia pestis Pestoides A]
 gi|270338242|gb|EFA49019.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|318606863|emb|CBY28361.1| cold shock protein CspG [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|320016134|gb|ADV99705.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin
          35]
 gi|325666990|gb|ADZ43634.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330859919|emb|CBX70249.1| cold shock-like protein cspB [Yersinia enterocolitica W22703]
          Length = 70

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q
Sbjct: 7  GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQ 57


>gi|170783067|ref|YP_001711401.1| putative cold shock protein [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|169157637|emb|CAQ02835.1| putative cold shock protein [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 127

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 9/66 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K+Y+ DKG+GFI    S++ G +VFLH SA+ S G+  +  G  + +      A+GK
Sbjct: 4  GKVKFYDEDKGFGFI----SSDDGQEVFLHASALPS-GVAGVKAGTRLEFGI----ADGK 54

Query: 65 YSAENL 70
            A+ L
Sbjct: 55 RGAQAL 60


>gi|189499792|ref|YP_001959262.1| cold-shock DNA-binding domain-containing protein [Chlorobium
          phaeobacteroides BS1]
 gi|189495233|gb|ACE03781.1| cold-shock DNA-binding domain protein [Chlorobium
          phaeobacteroides BS1]
          Length = 96

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNL 46
          M  +  +KW++  KGYGFI  P+G    G+D+F+H SA+ S   F +
Sbjct: 1  MSRKSKVKWFDGKKGYGFIVNPDG----GEDIFVHFSAIVSEQSFKV 43


>gi|301166258|emb|CBW25833.1| cold shock-like protein [Bacteriovorax marinus SJ]
          Length = 64

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 6/54 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G +K+++ +KG+GFITPE     G D+F+H + + S     L EG  V Y+
Sbjct: 1  METGKVKFFDQEKGFGFITPE---NGGKDIFVHITGIQSG---PLNEGDTVEYE 48


>gi|17533635|ref|NP_496366.1| Y-box family member (cey-1) [Caenorhabditis elegans]
 gi|3876637|emb|CAB04257.1| C. elegans protein F33A8.3, confirmed by transcript evidence
          [Caenorhabditis elegans]
          Length = 208

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 7/59 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          +G++KW+N   GYGFI     T++ +D+F+H++A+ +      L +L + + V +D V+
Sbjct: 22 KGTVKWFNVKNGYGFIN---RTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVE 77


>gi|148273654|ref|YP_001223215.1| putative cold shock protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|147831584|emb|CAN02552.1| putative cold shock protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
          Length = 127

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 9/66 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K+Y+ DKG+GFI    S++ G +VFLH SA+ S G+  +  G  + +      A+GK
Sbjct: 4  GKVKFYDEDKGFGFI----SSDDGQEVFLHASALPS-GVAGVKAGTRLEFGI----ADGK 54

Query: 65 YSAENL 70
            A+ L
Sbjct: 55 RGAQAL 60


>gi|156972845|ref|YP_001443752.1| cold shock protein [Vibrio harveyi ATCC BAA-1116]
 gi|156524439|gb|ABU69525.1| hypothetical protein VIBHAR_00522 [Vibrio harveyi ATCC BAA-1116]
          Length = 69

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++KW+N  KG+GFI    S  +G+D+F+H   +   G   L EG  V++
Sbjct: 7  GTVKWFNEAKGFGFI----SQANGNDLFVHFRNILGDGFKKLIEGDQVSF 52


>gi|9957540|gb|AAG09405.1|AF179614_1 cold shock protein B [Yersinia enterocolitica]
          Length = 62

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q
Sbjct: 7  GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQ 57


>gi|68535487|ref|YP_250192.1| putative cold shock protein [Corynebacterium jeikeium K411]
 gi|260579770|ref|ZP_05847627.1| cold-shock domain family protein [Corynebacterium jeikeium ATCC
          43734]
 gi|68263086|emb|CAI36574.1| putative cold shock protein [Corynebacterium jeikeium K411]
 gi|258602122|gb|EEW15442.1| cold-shock domain family protein [Corynebacterium jeikeium ATCC
          43734]
          Length = 127

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KWY+ D+GYGF++  G     +DV++  S V   G+  L +GQ + Y+++
Sbjct: 4  GKVKWYDADRGYGFVSNPGD----EDVYVG-SQVLPDGVTELVKGQRIEYEFI 51


>gi|123441859|ref|YP_001005842.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122088820|emb|CAL11626.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|318606254|emb|CBY27752.1| cold shock protein CspB [Yersinia enterocolitica subsp.
          palearctica Y11]
          Length = 69

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 5/51 (9%)

Query: 5  GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  +GYGFI+P +GS     DV++ ++A+A+    +L+EGQ V +
Sbjct: 6  GRVKWFNQSEGYGFISPHDGSL----DVYVSKTAIANTKNKSLSEGQDVEF 52


>gi|159044337|ref|YP_001533131.1| putative cold shock protein [Dinoroseobacter shibae DFL 12]
 gi|157912097|gb|ABV93530.1| putative cold shock protein [Dinoroseobacter shibae DFL 12]
          Length = 173

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++P KG+GF+  E     G D+ LH + + + G  ++ +G  +    VQ    G 
Sbjct: 13 GTVKWFDPKKGFGFVVGEA---DGPDILLHANVLRNFGQSSVADGSQIQI-RVQETPRGI 68

Query: 65 YSAENLKLVPKSSN 78
           + E + + P   +
Sbjct: 69 QAVEVVAITPPEMD 82



 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +KW++  KG+GF+   G+ E   D+F+H   +   G  +L  G+ V    +     G+
Sbjct: 103 GRVKWFDKVKGFGFLNVFGADE---DIFVHMDVLRRCGFSDLQAGEAVAV-RIGESERGR 158

Query: 65  YSAENL 70
            + E L
Sbjct: 159 LALEVL 164


>gi|316971587|gb|EFV55344.1| tRNA-specific adenosine deaminase 2 [Trichinella spiralis]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           VH G ++++  ++G+G+ITP     +G+D+F+H S V   G +   +G  VTY
Sbjct: 215 VHYGRVRYFCRERGHGYITPLDQNPAGEDIFVHISDV--EGDYAPHDGDEVTY 265


>gi|238757626|ref|ZP_04618810.1| Cold shock-like protein [Yersinia aldovae ATCC 35236]
 gi|238795858|ref|ZP_04639371.1| Cold shock-like protein [Yersinia mollaretii ATCC 43969]
 gi|238704131|gb|EEP96664.1| Cold shock-like protein [Yersinia aldovae ATCC 35236]
 gi|238720321|gb|EEQ12124.1| Cold shock-like protein [Yersinia mollaretii ATCC 43969]
 gi|330862904|emb|CBX73040.1| cold shock-like protein cspE [Yersinia enterocolitica W22703]
          Length = 77

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 5/51 (9%)

Query: 5  GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  +GYGFI+P +GS     DV++ ++A+A+    +L+EGQ V +
Sbjct: 14 GRVKWFNQSEGYGFISPHDGSL----DVYVSKTAIANTKNKSLSEGQDVEF 60


>gi|88703592|ref|ZP_01101308.1| cold-shock domain family protein [Congregibacter litoralis KT71]
 gi|88702306|gb|EAQ99409.1| cold-shock domain family protein [Congregibacter litoralis KT71]
          Length = 70

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFIT E       DVF+H  ++   G   L EG+ V +   +
Sbjct: 7  GTVKWFNNAKGFGFITGESFD---GDVFVHFRSIQGDGFRTLNEGEEVEFTLTE 57


>gi|297568405|ref|YP_003689749.1| cold-shock DNA-binding domain protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296924320|gb|ADH85130.1| cold-shock DNA-binding domain protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 70

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI  +  +    DVF+H   +   G  +L +GQ V++  V+      
Sbjct: 7  GRVKWFNAPKGFGFIERDNDS----DVFVHYRGIRGEGYRSLQDGQSVSFAVVETPKG-- 60

Query: 65 YSAENLKLV 73
            AE+++++
Sbjct: 61 LQAEDVEVI 69


>gi|167467804|ref|ZP_02332508.1| major cold shock protein Cspa1 [Yersinia pestis FV-1]
          Length = 70

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q
Sbjct: 7  GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQ 57


>gi|158295359|ref|XP_001237771.2| AGAP006108-PA [Anopheles gambiae str. PEST]
 gi|157015999|gb|EAU76557.2| AGAP006108-PA [Anopheles gambiae str. PEST]
          Length = 402

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
           G +KW+N   GYGFI   G T+  +DVF+H+SA+A       + ++ +G+ V +D V
Sbjct: 90  GVVKWFNVKSGYGFIN-RGDTQ--EDVFVHQSAIARNNPKKAVRSVGDGEQVEFDVV 143


>gi|238789311|ref|ZP_04633098.1| Cold shock-like protein [Yersinia frederiksenii ATCC 33641]
 gi|238792392|ref|ZP_04636026.1| Cold shock-like protein [Yersinia intermedia ATCC 29909]
 gi|238722643|gb|EEQ14296.1| Cold shock-like protein [Yersinia frederiksenii ATCC 33641]
 gi|238728318|gb|EEQ19838.1| Cold shock-like protein [Yersinia intermedia ATCC 29909]
          Length = 65

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 5/51 (9%)

Query: 5  GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  +GYGFI+P +GS     DV++ ++A+A+    +L+EGQ V +
Sbjct: 2  GRVKWFNQSEGYGFISPHDGSL----DVYVSKTAIANTKNKSLSEGQDVEF 48


>gi|297563111|ref|YP_003682085.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296847559|gb|ADH69579.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 127

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ DKG+GF+T     + G +VF+H S++   G  +L  GQ V +      A G+
Sbjct: 4  GKVKWYDGDKGFGFLT----RDDGGEVFVHSSSL-PPGTTSLRPGQKVDFGV----AEGR 54

Query: 65 YSAENLKL 72
            A+ L++
Sbjct: 55 KGAQALQV 62


>gi|254282751|ref|ZP_04957719.1| 'Cold-shock' DNA-binding domain protein [gamma proteobacterium
           NOR51-B]
 gi|219678954|gb|EED35303.1| 'Cold-shock' DNA-binding domain protein [gamma proteobacterium
           NOR51-B]
          Length = 123

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           +GSIKW+N  KG+GFIT     + G++VF+H   V       +  GQ V Y   + +
Sbjct: 60  KGSIKWFNATKGFGFIT----GDDGNEVFVHFRNVEQLSKREIKPGQRVAYRVTETE 112


>gi|69246243|ref|ZP_00603856.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
 gi|68195344|gb|EAN09793.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
          Length = 35

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 4/34 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G++KW+N +KG+GFI    S E G DVF+H SA+
Sbjct: 4  GTVKWFNAEKGFGFI----SREDGSDVFVHFSAI 33


>gi|222148686|ref|YP_002549643.1| cold shock protein [Agrobacterium vitis S4]
 gi|221735672|gb|ACM36635.1| cold shock protein [Agrobacterium vitis S4]
          Length = 192

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ V   +   D 
Sbjct: 117 LERVLVKWFNRTKGFGFLT---RGEGTEDIFVHMETLRRFGLTELRPGQTVLVRFGNGD- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMAAE 179



 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G +KW++  KG+GFI P+   +   DV LH + +   G   + EG  + 
Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEGTRIV 73


>gi|311897807|dbj|BAJ30215.1| putative cold shock protein [Kitasatospora setae KM-6054]
          Length = 127

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  KGYGF+    S + G +VF+H  A+  AG+  L  GQ V +
Sbjct: 4  GQVKWFNETKGYGFL----SRDDGGEVFVHTKAL-PAGVTTLRPGQRVEF 48


>gi|227876361|ref|ZP_03994473.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris ATCC
          35243]
 gi|269975926|ref|ZP_06182930.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris 28-1]
 gi|306817253|ref|ZP_07450999.1| cold-shock domain family protein [Mobiluncus mulieris ATCC 35239]
 gi|307700373|ref|ZP_07637412.1| putative cold shock protein [Mobiluncus mulieris FB024-16]
 gi|227842902|gb|EEJ53099.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris ATCC
          35243]
 gi|269935754|gb|EEZ92284.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris 28-1]
 gi|304649933|gb|EFM47212.1| cold-shock domain family protein [Mobiluncus mulieris ATCC 35239]
 gi|307614358|gb|EFN93588.1| putative cold shock protein [Mobiluncus mulieris FB024-16]
          Length = 125

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 9/66 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ DKG+GFIT  GS   G +VFLH SA+   G+     G  V Y  +    +GK
Sbjct: 4  GKVKWYDADKGFGFIT--GS--DGIEVFLHASAL-PPGVTEPKAGTRVEYSVI----DGK 54

Query: 65 YSAENL 70
            A+ +
Sbjct: 55 RGAQAM 60


>gi|3121929|sp|Q52287|CSPA_PHOPO RecName: Full=Major cold shock protein
 gi|1402767|gb|AAC80250.1| major cold-shock protein [Photobacterium phosphoreum]
          Length = 46

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q
Sbjct: 1  EKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 43


>gi|288558834|sp|P45441|YBX2B_XENLA RecName: Full=Y-box-binding protein 2-B; AltName: Full=Cytoplasmic
           RNA-binding protein p54; AltName: Full=Frog Y-box
           protein 2-B; Short=FRGY2b; AltName: Full=Messenger
           ribonucleoprotein particle 3; Short=mRNP3
 gi|161611735|gb|AAI55914.1| Csda-A protein [Xenopus laevis]
          Length = 324

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 7/61 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      +S +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 43  QGTVKWFNVRNGYGFIN---RNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99

Query: 60  D 60
           +
Sbjct: 100 E 100


>gi|172058435|ref|YP_001814895.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|171990956|gb|ACB61878.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
          255-15]
          Length = 66

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
          + +G +KW+N +KGYGFI     T    DVF+H SA+ + G  +L
Sbjct: 1  MEQGKVKWFNAEKGYGFI----ETSDAKDVFVHFSAIQADGYKSL 41


>gi|241895732|ref|ZP_04783028.1| cold shock protein CspA [Weissella paramesenteroides ATCC 33313]
 gi|241871099|gb|EER74850.1| cold shock protein CspA [Weissella paramesenteroides ATCC 33313]
          Length = 69

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +K +  DKG+GFI  +G     DDVF+H SA+ +  + +LT GQ V    VQ
Sbjct: 6  GYVKTWQSDKGFGFIELKGE----DDVFVHFSAIQTPRVRDLTVGQEVKLVVVQ 55


>gi|307823633|ref|ZP_07653862.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307735618|gb|EFO06466.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 107

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K +  D+G+GFI+P+   + G D+F+H SA+       +T G ++ Y  V  D  G
Sbjct: 3  KGVLKTWKEDRGFGFISPD---DGGKDIFIHISALKGTSRRPVT-GDVIYYQ-VARDNRG 57

Query: 64 KYSAEN 69
          KY A N
Sbjct: 58 KYKAIN 63


>gi|147901492|ref|NP_001081167.1| Y-box-binding protein 2-B [Xenopus laevis]
 gi|214642|gb|AAA49924.1| p54 [Xenopus laevis]
          Length = 324

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 7/61 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      +S +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 43  QGTVKWFNVRNGYGFIN---RNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99

Query: 60  D 60
           +
Sbjct: 100 E 100


>gi|238759184|ref|ZP_04620352.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
 gi|238702600|gb|EEP95149.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
          Length = 66

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q
Sbjct: 3  GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQ 53


>gi|227821970|ref|YP_002825941.1| cold shock protein [Sinorhizobium fredii NGR234]
 gi|227340970|gb|ACP25188.1| cold shock protein [Sinorhizobium fredii NGR234]
          Length = 192

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   GL  L  GQ+V   +
Sbjct: 117 LERVLVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLCRF 168



 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G IKW++  KG+GFI P+   +   DV LH + +   G   + EG  V 
Sbjct: 28 GVIKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTVLEGARVV 73


>gi|126208205|ref|YP_001053430.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          L20]
 gi|126096997|gb|ABN73825.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 5b str. L20]
          Length = 63

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GFIT +       D+F H S + S G  +L  GQ V ++ +  +     S
Sbjct: 1  MKWFNSAKGFGFITSDNVE---GDIFAHFSEIQSEGYRSLKVGQKVQFELINGERGA--S 55

Query: 67 AENLKLVP 74
          A  + LV 
Sbjct: 56 AAKISLVE 63


>gi|322510909|gb|ADX06222.1| cold-shock DNA-binding domain-containing protein [Organic Lake
          phycodnavirus 2]
          Length = 88

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GF+      E+G + F H S ++  G   L  G+ V+   V  D N K  
Sbjct: 4  VKWFNKRKGFGFVV----DETGSEYFCHHSDISITGYKYLRAGEYVSGTVVNMDGNKKKL 59

Query: 67 AENLKLVP 74
          +  L  VP
Sbjct: 60 SNILPPVP 67


>gi|316967791|gb|EFV52174.1| DNA-binding protein A [Trichinella spiralis]
          Length = 377

 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF 44
           +G +KW+N   GYGFI      ++G+D+F+H+ + +S  LF
Sbjct: 122 KGKVKWFNVKNGYGFIN---RLDTGEDIFVHQVSCSSESLF 159


>gi|47214045|emb|CAG00703.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 134

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 7/59 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+LV +D ++
Sbjct: 9  QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGELVEFDVIE 64


>gi|72160638|ref|YP_288295.1| cold-shock DNA-binding protein family protein [Thermobifida fusca
          YX]
 gi|71914370|gb|AAZ54272.1| cold-shock DNA-binding protein family [Thermobifida fusca YX]
          Length = 127

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KWY+  KG+GF+T     + G +VFLH SA+   G   L  GQ V +  V+
Sbjct: 4  GKVKWYDAGKGFGFLT----KDDGGEVFLHASAL-PPGTTTLRPGQRVEFGIVE 52


>gi|305664855|ref|YP_003861142.1| cold shock protein [Maribacter sp. HTCC2170]
 gi|88707977|gb|EAR00216.1| cold shock protein [Maribacter sp. HTCC2170]
          Length = 64

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KGYGFIT +GS E   D F+H S +       + EG +V ++  Q     
Sbjct: 3  KGTVKFFNDSKGYGFITEDGSNE---DHFVHISGLID----EVREGDVVEFELQQGKKG- 54

Query: 64 KYSAENLKLV 73
            +A N+K+V
Sbjct: 55 -LNAVNVKVV 63


>gi|227487732|ref|ZP_03918048.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542371|ref|ZP_03972420.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092234|gb|EEI27546.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181569|gb|EEI62541.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 129

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G +KWY+PDKG+GF     S    +DV + +S V   G+  L  GQ + +D+
Sbjct: 4  GKVKWYDPDKGFGF----ASNPGQEDVHISKS-VLPEGVDTLHPGQRIEFDF 50


>gi|148555471|ref|YP_001263053.1| cold-shock DNA-binding protein family protein [Sphingomonas
           wittichii RW1]
 gi|148500661|gb|ABQ68915.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1]
          Length = 198

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
           +KW+N  KGYGF+  +G T+   D+F+H   V  AGL +L
Sbjct: 137 VKWFNRLKGYGFLVRDGETQ---DIFIHMETVRRAGLPDL 173



 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++KW++  +G+GFI  +G      DV +H S +   G   L EG  +  + V  D
Sbjct: 36 GAVKWFDATRGFGFIATDGDR---GDVLVHFSVLRDHGRRTLPEGARIACEVVARD 88


>gi|54026194|ref|YP_120436.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54017702|dbj|BAD59072.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 68

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          +G++ W++  KG+GFI  +G    G DVF+    +   G  +L EGQ V +D  Q+ + 
Sbjct: 3  QGTVLWFDSKKGFGFIAQDG---GGADVFVDYLELVGGGFRSLHEGQRVRFDLRQSKSG 58


>gi|281344168|gb|EFB19752.1| hypothetical protein PANDA_021601 [Ailuropoda melanoleuca]
          Length = 310

 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQN 59
          RGS+KW+N   GYGFI+   + E   DVF+H+ A+          ++ +G+ V +D VQ 
Sbjct: 37 RGSVKWFNVKNGYGFISRHDTQE---DVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQG 93

Query: 60 D 60
          +
Sbjct: 94 E 94


>gi|226364441|ref|YP_002782223.1| cold shock protein [Rhodococcus opacus B4]
 gi|226242930|dbj|BAH53278.1| cold shock protein [Rhodococcus opacus B4]
          Length = 139

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          V  G +KWY+ +KG+GF+    S E G+DV++  SA+   G+  L  GQ V +
Sbjct: 4  VPTGKVKWYDVEKGFGFL----SQEEGEDVYVRSSALPE-GVEGLKAGQRVEF 51


>gi|92117674|ref|YP_577403.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91800568|gb|ABE62943.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 68

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+K++N +KGYGFI P+  T    D+FLH   +A    +     + V Y+ V    +G+
Sbjct: 4  GSVKFFNAEKGYGFIQPDDGTP---DIFLHVHGLADKLRYPCPRDR-VEYE-VGKGPDGR 58

Query: 65 YSAENLKLV 73
            AE + L+
Sbjct: 59 LRAERVALI 67


>gi|332162199|ref|YP_004298776.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|325666429|gb|ADZ43073.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
          Length = 69

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 5/51 (9%)

Query: 5  GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW+N  +GYGFI+P +GS     DV++ ++A+A+    +L+EGQ V +
Sbjct: 6  GRVKWFNQSEGYGFISPHDGSL----DVYVSKTAIANTKNKSLSEGQDVEF 52


>gi|229488838|ref|ZP_04382704.1| cold-shock DNA-binding domain protein [Rhodococcus erythropolis
          SK121]
 gi|229324342|gb|EEN90097.1| cold-shock DNA-binding domain protein [Rhodococcus erythropolis
          SK121]
          Length = 140

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ +KG+GF+    S E G+DV++  SA+   G+  L  GQ V +      A
Sbjct: 4  VPTGKVKWYDVEKGFGFL----SQEEGEDVYVRASALPE-GVEGLKAGQRVEFGM----A 54

Query: 62 NGKYSAENLKL 72
           G+   + L L
Sbjct: 55 AGRRGPQALSL 65


>gi|159037812|ref|YP_001537065.1| cold-shock DNA-binding domain-containing protein [Salinispora
          arenicola CNS-205]
 gi|157916647|gb|ABV98074.1| cold-shock DNA-binding domain protein [Salinispora arenicola
          CNS-205]
          Length = 138

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 18/82 (21%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH-------RSAVASAGLFNLTEGQLVTY 54
          + +G+I  ++  +GYGFI P G    GDDVF+H       R AVA+        G  V+Y
Sbjct: 1  MEKGTIVRFDDVRGYGFIAPFG---GGDDVFVHANDFGDQRHAVAA--------GMRVSY 49

Query: 55 DYVQNDANGKYSAENLKLVPKS 76
          + VQ++   K ++  L+  P S
Sbjct: 50 EVVQSERGLKVASVVLESAPAS 71


>gi|313205947|ref|YP_004045124.1| colD-shock DNA-binding protein family [Riemerella anatipestifer
          DSM 15868]
 gi|312445263|gb|ADQ81618.1| cold-shock DNA-binding protein family [Riemerella anatipestifer
          DSM 15868]
 gi|315022260|gb|EFT35288.1| Cold shock protein CspA [Riemerella anatipestifer RA-YM]
 gi|325336613|gb|ADZ12887.1| Cold shock protein [Riemerella anatipestifer RA-GD]
          Length = 63

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFITP   +  G+DVF+H S + +     + E   V Y+  Q   
Sbjct: 1  MQEGTVKFFNETKGFGFITP---SNGGEDVFVHTSGLKTK----VHENDKVVYELQQGKK 53

Query: 62 NGKYSAENLKL 72
              +A N+KL
Sbjct: 54 G--INAVNVKL 62


>gi|47114837|emb|CAE48342.1| unnamed protein product [Methylocystis sp. SC2]
          Length = 183

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G IKW++  KGYGF+ P+   +  DD+ LH + +  +G+    EG  V  +
Sbjct: 20 GRIKWFDVAKGYGFVVPD---DGSDDILLHVTILRRSGMQTAFEGARVVCE 67



 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T    TE   D+FLH   V   G+  L  G  V   Y      G  +
Sbjct: 114 VKWFNRMKGFGFLTRGEGTE---DIFLHMETVRRYGMTELKPGDSVLVRY-GGGPKGLMA 169

Query: 67  AENLKLVPKS 76
           AE   L  KS
Sbjct: 170 AEVRPLDAKS 179


>gi|15965471|ref|NP_385824.1| putative cold shock transcription regulator protein [Sinorhizobium
           meliloti 1021]
 gi|307302592|ref|ZP_07582348.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
           BL225C]
 gi|307318438|ref|ZP_07597872.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83]
 gi|15074652|emb|CAC46297.1| Putative cold shock transcription regulator [Sinorhizobium meliloti
           1021]
 gi|306895778|gb|EFN26530.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83]
 gi|306902956|gb|EFN33547.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 192

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   GL  L  GQ+V   +
Sbjct: 117 LERVLVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLCRF 168



 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G IKW++  KG+GFI P+   +   DV LH + +   G   + EG  V 
Sbjct: 28 GVIKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTVLEGARVV 73


>gi|303283324|ref|XP_003060953.1| cold-shock protein with RNA binding domain [Micromonas pusilla
           CCMP1545]
 gi|226457304|gb|EEH54603.1| cold-shock protein with RNA binding domain [Micromonas pusilla
           CCMP1545]
          Length = 316

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++ W+N  KG+GFIT E   +   D+F+H+S + S G  +L + + V +  +Q   +G+
Sbjct: 42  GTVNWFNVAKGFGFITRE---DGQGDIFVHQSDIYSEGFRSLRDEEPVEFT-LQEIGDGR 97

Query: 65  YSA 67
           Y A
Sbjct: 98  YKA 100


>gi|308510156|ref|XP_003117261.1| CRE-CEY-1 protein [Caenorhabditis remanei]
 gi|308242175|gb|EFO86127.1| CRE-CEY-1 protein [Caenorhabditis remanei]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 7/59 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          +G++KW+N   GYGFI     T++ +D+F+H++A+ +      L +L + + V +D V+
Sbjct: 22 KGTVKWFNVKNGYGFIN---RTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVE 77


>gi|225011297|ref|ZP_03701753.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
          MS024-3C]
 gi|225004553|gb|EEG42519.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
          MS024-3C]
          Length = 63

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 6/51 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++K++N  KGYGFIT +   ESG D F+H +A+       + EG  V+Y+
Sbjct: 3  GTVKFFNGSKGYGFITND---ESGKDTFVHATALNG---LQINEGDKVSYE 47


>gi|150396662|ref|YP_001327129.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150028177|gb|ABR60294.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
           medicae WSM419]
          Length = 192

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  KG+GF+T    TE   D+F+H   +   GL  L  GQ+V   +
Sbjct: 117 LERVLVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLCRF 168



 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          G IKW++  KG+GFI P+   +   DV LH + +   G   + EG  V
Sbjct: 28 GVIKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTVLEGARV 72


>gi|14602477|gb|AAH09744.1| CSDA protein [Homo sapiens]
          Length = 303

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L +L +G+ V +D V+ +
Sbjct: 93  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSLGDGETVEFDVVEGE 149


>gi|84687162|ref|ZP_01015043.1| cold shock DNA-binding domain protein [Maritimibacter
          alkaliphilus HTCC2654]
 gi|84664750|gb|EAQ11233.1| cold shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2654]
          Length = 185

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V RG++KW++P KG+GF+  +   + G D+ LH + + + G  ++ +   +    VQ+  
Sbjct: 20 VQRGTVKWFDPAKGFGFVVAD---QGGPDILLHANVLRNFGQSSVADRAGIEI-VVQDTP 75

Query: 62 NGKYSAENLKL 72
           G  + E L +
Sbjct: 76 RGMQAVEVLAI 86



 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           +KW++  KG+GF    G  E   DVF+H   +  +GL +L  G+ +
Sbjct: 116 VKWFDKGKGFGFANAFGKPE---DVFIHVEVLRRSGLADLQPGEAI 158


>gi|157126269|ref|XP_001654567.1| hypothetical protein AaeL_AAEL002060 [Aedes aegypti]
 gi|108882539|gb|EAT46764.1| hypothetical protein AaeL_AAEL002060 [Aedes aegypti]
          Length = 192

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 7/63 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT----EGQLVTYDYVQND 60
          G++KW+N   G+GFIT     ++G+D+F+H+S +      + T    +G++V +  + + 
Sbjct: 36 GTVKWFNAKDGFGFITRH---DTGEDIFVHKSCIFKPNRNHFTKSIGDGEIVEFGLIASK 92

Query: 61 ANG 63
            G
Sbjct: 93 VTG 95


>gi|226308122|ref|YP_002768082.1| cold shock protein [Rhodococcus erythropolis PR4]
 gi|226187239|dbj|BAH35343.1| probable cold shock protein [Rhodococcus erythropolis PR4]
          Length = 137

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF+    S E G+DV++  SA+   G+  L  GQ V +      A G+
Sbjct: 4  GKVKWYDVEKGFGFL----SQEEGEDVYVRASALPE-GVEGLKAGQRVEFGM----AAGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|242008101|ref|XP_002424851.1| Y box binding protein, putative [Pediculus humanus corporis]
 gi|212508401|gb|EEB12113.1| Y box binding protein, putative [Pediculus humanus corporis]
          Length = 264

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT----EGQLVTYDYV 57
          G++KW+N   GYGFI      ++ +DVF+H+SA+       L     +G++V +D V
Sbjct: 26 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIVKNNPKKLVRSVGDGEVVEFDVV 79


>gi|2739396|gb|AAB94634.1| Y-box protein [Drosophila melanogaster]
          Length = 359

 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 6/56 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS---AGLFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI    + E   DVF+H+SA+A+     + ++ +G++V +D V
Sbjct: 65  GTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIANNPKKAVRSVGDGEVVEFDVV 117


>gi|332025391|gb|EGI65558.1| Y-box factor-like protein [Acromyrmex echinatior]
          Length = 362

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS----AGLFNLTEGQLVTYDYV 57
          G++KW+N   GYGFI      ++ +DVF+H+SA+        + ++ +G++V +D V
Sbjct: 26 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVV 79


>gi|254491496|ref|ZP_05104675.1| conserved hypothetical protein [Methylophaga thiooxidans DMS010]
 gi|224462974|gb|EEF79244.1| conserved hypothetical protein [Methylophaga thiooxydans DMS010]
          Length = 207

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 10/75 (13%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G IK +N  KGYGFI PE     G D+FLH  +V S G      G+ + Y   ++  N
Sbjct: 5  RKGKIKTWNEGKGYGFIIPE---SGGKDIFLHIKSVQSRGRVP-KLGETIAYTLSKDKQN 60

Query: 63 ------GKYSAENLK 71
                  Y  E LK
Sbjct: 61 RLCAIDATYDGEKLK 75


>gi|160914513|ref|ZP_02076728.1| hypothetical protein EUBDOL_00519 [Eubacterium dolichum DSM 3991]
 gi|158433671|gb|EDP11960.1| hypothetical protein EUBDOL_00519 [Eubacterium dolichum DSM 3991]
          Length = 65

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +K +N +KGYGFIT EG    G D+F H S +   G   +     V ++ V+ +
Sbjct: 2  QGKVKMFNQEKGYGFITREG----GKDIFFHYSQLVMEGYKTIDPEASVEFELVETE 54


>gi|147902682|ref|NP_001088341.1| cold shock domain containing C2, RNA binding [Xenopus laevis]
 gi|54038112|gb|AAH84399.1| LOC495181 protein [Xenopus laevis]
          Length = 152

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  KG+GFITPE   + G D+FLH S +   G +   EG  VTY        N
Sbjct: 69  KGVCKCFSRSKGHGFITPE---DGGPDIFLHISDI--EGEYVPMEGDEVTYKVCTIPPKN 123

Query: 63  GKYSAENLKLV 73
            K+ A  +K+ 
Sbjct: 124 EKHQAVEVKIT 134


>gi|330862902|emb|CBX73039.1| cold shock-like protein cspE [Yersinia enterocolitica W22703]
          Length = 50

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 5/49 (10%)

Query: 5  GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          G +KW+N  +GYGFI+P +GS     DV++ ++A+A+    +L+EGQ V
Sbjct: 6  GRVKWFNQSEGYGFISPHDGSL----DVYVSKTAIANTKNKSLSEGQDV 50


>gi|213691595|ref|YP_002322181.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|312132324|ref|YP_003999663.1| cspc2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|213523056|gb|ACJ51803.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|311773640|gb|ADQ03128.1| CspC2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|320457683|dbj|BAJ68304.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
          15697]
          Length = 129

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G ++W++  KGYGFIT    +E G DVFL   A+ + G   L +G  V Y  V  D    
Sbjct: 4  GRVRWFDAAKGYGFIT----SEEGKDVFLPAQALPT-GATTLRKGAKVEYSVV--DGRRG 56

Query: 65 YSAENLKLV 73
            A +++L+
Sbjct: 57 PQAMDVRLI 65


>gi|289665743|ref|ZP_06487324.1| integral membrane protein [Xanthomonas campestris pv. vasculorum
          NCPPB702]
 gi|289671247|ref|ZP_06492322.1| integral membrane protein [Xanthomonas campestris pv. musacearum
          NCPPB4381]
          Length = 204

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  +N  KG+GF+TP G    GD  F+H SA A        +G+++TY  ++ D
Sbjct: 1  MRYQGRLSDWNDHKGFGFVTPNG---GGDRAFVHISAFAQQSR-RPRDGEIITYA-IERD 55

Query: 61 ANGKYSAENLKLVPKSS 77
          A  + +A  ++   +++
Sbjct: 56 AQKRLNATQVRWADRTT 72


>gi|3121924|sp|Q46051|CSPA_CITFR RecName: Full=Major cold shock protein
 gi|3121925|sp|Q46664|CSPA_ENTAE RecName: Full=Major cold shock protein
 gi|3121930|sp|Q53816|CSPA_SHIBO RecName: Full=Major cold shock protein
 gi|3121934|sp|Q56178|CSPA_SALVI RecName: Full=Major cold shock protein
 gi|1402743|gb|AAC80237.1| major cold-shock protein [Citrobacter freundii]
 gi|1402745|gb|AAC80236.1| major cold-shock protein [Citrobacter freundii]
 gi|1402747|gb|AAC80238.1| major cold-shock protein [Enterobacter aerogenes]
 gi|1402749|gb|AAC80239.1| major cold-shock protein [Escherichia coli]
 gi|1402773|gb|AAC80240.1| major cold-shock protein [Shigella boydii]
 gi|1402779|gb|AAC80241.1| major cold-shock protein [Shigella flexneri]
 gi|1402785|gb|AAC80252.1| major cold-shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium]
 gi|1402787|gb|AAC80253.1| major cold-shock protein [Salmonella enterica subsp. enterica
          serovar Virchow]
          Length = 46

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 3/42 (7%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          DKG+GFITP+  ++   DVF+H SA+ + G  +L EGQ V++
Sbjct: 1  DKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 39


>gi|111021931|ref|YP_704903.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|110821461|gb|ABG96745.1| probable cold shock protein [Rhodococcus jostii RHA1]
          Length = 136

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF+    S E G+DV++  SA+   G+  L  GQ V +      A G+
Sbjct: 4  GKVKWYDVEKGFGFL----SQEEGEDVYVRSSALPE-GVEGLKAGQRVEFGM----AAGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|170572609|ref|XP_001892171.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
          malayi]
 gi|158602705|gb|EDP39010.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
          malayi]
          Length = 244

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-----LTEGQLVTYDYVQ 58
          +G +KWY+    YGFI  + +   G+DVF+H++A+A + +       L +G+ V +D VQ
Sbjct: 7  KGKVKWYSVRYHYGFIARDDN--KGNDVFVHQTAIAKSRIIKYYLRTLGDGEEVLFDIVQ 64


>gi|167946065|ref|ZP_02533139.1| Cold-shock DNA-binding protein [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 61

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
          G++KW++  KGYGFI  EG    G D+F+H  A+   G  +L +G
Sbjct: 2  GTVKWFDSGKGYGFIEREG----GKDLFVHFRAIVGEGHVSLEDG 42


>gi|19552047|ref|NP_600049.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
 gi|145294989|ref|YP_001137810.1| hypothetical protein cgR_0934 [Corynebacterium glutamicum R]
 gi|21323586|dbj|BAB98213.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032]
 gi|140844909|dbj|BAF53908.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 127

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KWY+ ++G+GF+    S   G+D F+ +  V   G+  L +GQ + +D+    A G+
Sbjct: 4  GTVKWYDAERGFGFV----SNPGGEDCFVGKQ-VLPKGVTELHKGQRIDFDF----AAGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 KGPQALRI 62


>gi|194131839|gb|ACF33225.1| Y-box protein Lyb2 [Lethenteron japonicum]
          Length = 181

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+
Sbjct: 65  GTVKWFNVKNGYGFIN---RNDTKEDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVE 119


>gi|324997476|ref|ZP_08118588.1| cold-shock DNA-binding protein family [Pseudonocardia sp. P1]
          Length = 128

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KWY+ +KG+GF++ +G    G+DV++ ++A+ S G   L  GQ V +
Sbjct: 4  GRVKWYDAEKGFGFLSQDG----GEDVYVRKAALPS-GTEALKSGQRVEF 48


>gi|126340161|ref|XP_001372013.1| PREDICTED: similar to YB2 [Monodelphis domestica]
          Length = 320

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D V+ +
Sbjct: 46  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 102


>gi|268532128|ref|XP_002631192.1| C. briggsae CBR-CEY-1 protein [Caenorhabditis briggsae]
 gi|187036968|emb|CAP23634.1| CBR-CEY-1 protein [Caenorhabditis briggsae AF16]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 7/59 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          +G++KW+N   GYGFI     T++ +D+F+H++A+ +      L +L + + V +D V+
Sbjct: 22 KGTVKWFNVKNGYGFIN---RTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVE 77


>gi|1402761|gb|AAC80245.1| major cold-shock protein [Lactococcus lactis subsp. cremoris]
 gi|1402777|gb|AAC80255.1| major cold-shock protein [Staphylococcus epidermidis]
          Length = 45

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D
Sbjct: 1  EKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD 44


>gi|213510928|ref|NP_001133543.1| Y-box-binding protein 2-A [Salmo salar]
 gi|209154422|gb|ACI33443.1| Y-box-binding protein 2-A [Salmo salar]
          Length = 328

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 7/59 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D V+
Sbjct: 31 QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVE 86


>gi|62751871|ref|NP_001015855.1| cold shock domain protein A [Xenopus (Silurana) tropicalis]
 gi|59861901|gb|AAH90361.1| cold shock domain protein A [Xenopus (Silurana) tropicalis]
          Length = 248

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 7/58 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
          +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D V
Sbjct: 37 QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVV 91


>gi|93005152|ref|YP_579589.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          cryohalolentis K5]
 gi|92392830|gb|ABE74105.1| cold-shock DNA-binding domain protein [Psychrobacter
          cryohalolentis K5]
          Length = 253

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G IK +N DKGYGFI  +  +E   DVF H  +V  A    +++GQ V ++  +ND 
Sbjct: 3  MQSGKIKHWNSDKGYGFIDVDNQSE---DVFFHIKSVRMAQP--ISKGQRVYFNSERNDK 57

Query: 62 NGKYSAE 68
          N   + E
Sbjct: 58 NQLRATE 64


>gi|296448672|ref|ZP_06890536.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
 gi|296253819|gb|EFH00982.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
          Length = 195

 Score = 40.8 bits (94), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G+IKW++  KGYGF+ P+   + G D+ LH + +  +G     EG  V  +
Sbjct: 32 GAIKWFDVSKGYGFVVPD---DGGADILLHVTTLRRSGFQTAYEGARVVCE 79



 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           +KW+N  KG+GF+T    T   DD+FLH   V   GL  L  G  V   Y
Sbjct: 126 VKWFNRVKGFGFLTRGDGT---DDIFLHMETVRRYGLAELKPGDSVLVRY 172


>gi|172041246|ref|YP_001800960.1| putative cold shock protein [Corynebacterium urealyticum DSM
          7109]
 gi|171852550|emb|CAQ05526.1| putative cold shock protein [Corynebacterium urealyticum DSM
          7109]
          Length = 127

 Score = 40.8 bits (94), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G ++W++ DKG+GF++  G     +DV++ R  V   G+  L  GQ V Y++V
Sbjct: 4  GKVRWFDADKGFGFVSNPGE----EDVYVGRQ-VLPEGVTELVPGQRVEYEFV 51


>gi|241813115|ref|XP_002414626.1| Y1 protein, putative [Ixodes scapularis]
 gi|215508837|gb|EEC18291.1| Y1 protein, putative [Ixodes scapularis]
          Length = 209

 Score = 40.8 bits (94), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT----EGQLVTYDYVQND 60
          G+++W+N   GYGFI      ++ +D+F+H++A+       LT    EG+ V +D V ++
Sbjct: 27 GTVQWFNVKNGYGFI---NRNDTREDIFVHQTAITRNHPQKLTRTVSEGETVQFDVVVDE 83

Query: 61 ANGK 64
             +
Sbjct: 84 ERAR 87


>gi|194131800|gb|ACF33224.1| Y-box protein Lyb3 [Lethenteron japonicum]
          Length = 171

 Score = 40.8 bits (94), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+
Sbjct: 65  GTVKWFNVKNGYGFIN---RNDTKEDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVE 119


>gi|3831560|gb|AAC70001.1| major cold shock protein [Bifidobacterium animalis]
          Length = 50

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 4/47 (8%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          KG+GFIT     E G DVF+H SA+   G  +L +GQ V+Y+  Q+D
Sbjct: 1  KGFGFIT----GEDGQDVFVHFSAINGEGYKSLDKGQAVSYNVKQSD 43


>gi|301620236|ref|XP_002939487.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2
           [Xenopus (Silurana) tropicalis]
 gi|301620238|ref|XP_002939488.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3
           [Xenopus (Silurana) tropicalis]
 gi|301620240|ref|XP_002939489.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 4
           [Xenopus (Silurana) tropicalis]
 gi|301620242|ref|XP_002939490.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 5
           [Xenopus (Silurana) tropicalis]
          Length = 153

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K ++  KG+GFITP    + G D+FLH S +   G +   EG  VTY       
Sbjct: 68  VYKGVCKCFSRSKGHGFITP---VDGGPDIFLHISDI--EGEYVPAEGDEVTYKVCTVPP 122

Query: 61  ANGKYSAENLKLV 73
            N K+ A  +K+ 
Sbjct: 123 KNEKHQAVEVKIT 135


>gi|226953538|ref|ZP_03824002.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|294649474|ref|ZP_06726898.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
 gi|226835716|gb|EEH68099.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|292824644|gb|EFF83423.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 97

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          ++G +K YNPDKG+GFI   G+TE   DVF H S   SA        + V +  V+N   
Sbjct: 6  YQGKVKQYNPDKGFGFI---GTTEG--DVFFHISDFPSAEG-EPKRNEKVKFAVVEN--Q 57

Query: 63 GKYSAENLKLV 73
          GK+ A  ++ V
Sbjct: 58 GKFKAVQIERV 68


>gi|118588945|ref|ZP_01546352.1| putative cold shock transcription regulator protein [Stappia
           aggregata IAM 12614]
 gi|118438274|gb|EAV44908.1| putative cold shock transcription regulator protein [Stappia
           aggregata IAM 12614]
          Length = 193

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           + ++KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ V   + +    G
Sbjct: 119 KATVKWFNRVKGFGFLT---QGEGSEDIFIHMETLRRFGITELRPGQDVLVRFGEG-PKG 174

Query: 64  KYSAE 68
           + +AE
Sbjct: 175 RMAAE 179



 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G+IKW++  KGYGFI P    +SGD D+ LH + +   G     EG  V  + +
Sbjct: 28 GTIKWFDVGKGYGFIVP----DSGDGDILLHVTCLRRDGYQTAYEGARVVCEVL 77


>gi|88798702|ref|ZP_01114285.1| Cold shock protein [Reinekea sp. MED297]
 gi|88778465|gb|EAR09657.1| Cold shock protein [Reinekea sp. MED297]
          Length = 87

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N  KG+GFI  +   E   D+F H S++   G   L  GQ V ++ V+++
Sbjct: 4  GKVKWFNNAKGFGFIVCDDHKE---DLFAHFSSIQMEGYKTLKAGQDVEFETVKSE 56


>gi|284009214|emb|CBA76294.1| cold shock protein [Arsenophonus nasoniae]
          Length = 72

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 4  RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G +KW++ ++G+GFITP +GS E    VF+H S + +     L EGQ V+Y   Q
Sbjct: 6  HGLVKWFDGNRGFGFITPNDGSKE----VFVHYSEIKNTHYQVLYEGQEVSYTPFQ 57


>gi|255586301|ref|XP_002533802.1| cellular nucleic acid binding protein, putative [Ricinus
          communis]
 gi|223526275|gb|EEF28589.1| cellular nucleic acid binding protein, putative [Ricinus
          communis]
          Length = 266

 Score = 40.8 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDAN 62
          RG +  ++  KG+GFI P+   + G+D+F+H SA+ S G + +L E  +V +    +D N
Sbjct: 15 RGKVVRFSDRKGFGFIKPD---DGGEDLFVHHSAIKSDGRYRSLAEDDVVEFTVSLSDDN 71

Query: 63 GKYSA 67
           KY A
Sbjct: 72 -KYQA 75


>gi|126737875|ref|ZP_01753605.1| cold shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
 gi|126721268|gb|EBA17972.1| cold shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
          Length = 178

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KGYGF+    S   G D+ LH + + + G  ++ +G  +      N   G
Sbjct: 12 QGLVKWFDPAKGYGFVV---SDSGGPDILLHVNVLRNFGQSSVADGTRIEV-VTHNTDRG 67

Query: 64 KYSAENLKLVPKSSN 78
            + E L ++P   +
Sbjct: 68 VQAVEILSILPPERD 82



 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF    G      DVFLH   +  +GL +L  G+ +    + +   G+ +
Sbjct: 108 VKWFNKGKGFGFANVFGRDA---DVFLHVEVLRQSGLADLQPGEALAMRVI-DGKRGQMA 163

Query: 67  AE 68
           AE
Sbjct: 164 AE 165


>gi|2073111|dbj|BAA19850.1| Y box protein 2 [Carassius auratus]
          Length = 297

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 7/58 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D V+
Sbjct: 23 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVE 77


>gi|224000840|ref|XP_002290092.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
          pseudonana CCMP1335]
 gi|220973514|gb|EED91844.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
          pseudonana CCMP1335]
          Length = 72

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          ++  KG+GFI P+  T+   DVF+H++++   G  +L E + V +  V+ D NG+  A
Sbjct: 1  FDTAKGFGFIVPDDGTK---DVFVHQTSIKVEGFRSLAENEAVEF-RVETDTNGRLRA 54


>gi|170031766|ref|XP_001843755.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167870926|gb|EDS34309.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 247

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 7/63 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQND 60
           G++KW+N   G+GFIT     ++G+D+F+H+S++    +   + ++ EG++V +  +   
Sbjct: 54  GTVKWFNVKDGFGFIT---RHDTGEDLFVHQSSILRPNSRHSVRSVGEGEVVEFGVIATK 110

Query: 61  ANG 63
             G
Sbjct: 111 VTG 113


>gi|294664904|ref|ZP_06730221.1| integral membrane protein [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 10535]
 gi|292605335|gb|EFF48669.1| integral membrane protein [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 10535]
          Length = 206

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  +N  KG+GF+TP G    GD  F+H SA A        +G+++TY  ++ D
Sbjct: 3  MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQTR-RPRDGEIITYA-IERD 57

Query: 61 ANGKYSAENLKLVPKSS 77
          A+ + +A  ++   +++
Sbjct: 58 AHKRLNAAQVRWADRTT 74


>gi|294625429|ref|ZP_06704060.1| integral membrane protein [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 11122]
 gi|292600252|gb|EFF44358.1| integral membrane protein [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 11122]
          Length = 204

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  +N  KG+GF+TP G    GD  F+H SA A        +G+++TY  ++ D
Sbjct: 1  MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQT-RRPRDGEIITYA-IERD 55

Query: 61 ANGKYSAENLKLVPKSS 77
          A+ + +A  ++   +++
Sbjct: 56 AHKRLNATQVRWAHRTT 72


>gi|83319695|ref|YP_424021.1| cold shock protein [Mycoplasma capricolum subsp. capricolum ATCC
          27343]
 gi|313664918|ref|YP_004046789.1| cold-shock DNA-binding domain protein [Mycoplasma leachii PG50]
 gi|83283581|gb|ABC01513.1| cold shock protein [Mycoplasma capricolum subsp. capricolum ATCC
          27343]
 gi|312949345|gb|ADR23941.1| cold-shock DNA-binding domain protein [Mycoplasma leachii PG50]
          Length = 68

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N +KG+GFIT +   +   DVF++ + +   G   L +GQ V+Y+
Sbjct: 4  GIVKWFNDEKGFGFITNDSDNK---DVFVYFANINVNGYKTLEQGQKVSYE 51


>gi|21243068|ref|NP_642650.1| integral membrane protein [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21108581|gb|AAM37186.1| integral membrane protein [Xanthomonas axonopodis pv. citri str.
          306]
          Length = 206

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  +N  KG+GF+TP G    GD  F+H SA A        +G+++TY  ++ D
Sbjct: 3  MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQT-RRPRDGEIITYA-IERD 57

Query: 61 ANGKYSAENLKLVPKSS 77
          A+ + +A  ++   +++
Sbjct: 58 AHKRLNATQVRWADRTT 74


>gi|332842519|ref|XP_001134851.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
           troglodytes]
          Length = 319

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 7/64 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 57  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 113

Query: 61  ANGK 64
              K
Sbjct: 114 KGAK 117


>gi|119963261|ref|YP_946802.1| cold shock protein [Arthrobacter aurescens TC1]
 gi|119950120|gb|ABM09031.1| putative cold shock protein [Arthrobacter aurescens TC1]
          Length = 127

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF+    + E G +VFL ++++  AG+  L  G  V +      A+G+
Sbjct: 4  GKVKWYDKEKGFGFL----AAEDGQEVFLPKTSL-PAGVTELKAGTRVEFGV----ADGR 54

Query: 65 YSAENLKL 72
            A+ L L
Sbjct: 55 RGAQALGL 62


>gi|29376277|ref|NP_815431.1| cold-shock domain-contain protein [Enterococcus faecalis V583]
 gi|227518915|ref|ZP_03948964.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis TX0104]
 gi|227553533|ref|ZP_03983582.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis HH22]
 gi|229545662|ref|ZP_04434387.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis TX1322]
 gi|229549854|ref|ZP_04438579.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis ATCC 29200]
 gi|255972638|ref|ZP_05423224.1| cold shock protein [Enterococcus faecalis T1]
 gi|256619219|ref|ZP_05476065.1| cold shock protein [Enterococcus faecalis ATCC 4200]
 gi|256762655|ref|ZP_05503235.1| cold shock protein [Enterococcus faecalis T3]
 gi|256853281|ref|ZP_05558651.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
 gi|256959135|ref|ZP_05563306.1| cold shock protein [Enterococcus faecalis DS5]
 gi|256961771|ref|ZP_05565942.1| cold shock protein [Enterococcus faecalis Merz96]
 gi|256964969|ref|ZP_05569140.1| cold shock protein [Enterococcus faecalis HIP11704]
 gi|257079167|ref|ZP_05573528.1| cold shock protein [Enterococcus faecalis JH1]
 gi|257082397|ref|ZP_05576758.1| cold-shock domain-containing protein [Enterococcus faecalis
          E1Sol]
 gi|257085029|ref|ZP_05579390.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|257087012|ref|ZP_05581373.1| cold shock protein [Enterococcus faecalis D6]
 gi|257090040|ref|ZP_05584401.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257416246|ref|ZP_05593240.1| cold shock protein [Enterococcus faecalis AR01/DG]
 gi|257419451|ref|ZP_05596445.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257422457|ref|ZP_05599447.1| cold shock protein [Enterococcus faecalis X98]
 gi|293383477|ref|ZP_06629390.1| cold-shock domain protein [Enterococcus faecalis R712]
 gi|293388868|ref|ZP_06633354.1| cold-shock domain protein [Enterococcus faecalis S613]
 gi|294779384|ref|ZP_06744785.1| major cold shock protein CspA [Enterococcus faecalis PC1.1]
 gi|300860204|ref|ZP_07106291.1| cold shock protein CspD [Enterococcus faecalis TUSoD Ef11]
 gi|307269537|ref|ZP_07550876.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|307273064|ref|ZP_07554310.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|307275813|ref|ZP_07556952.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|307289264|ref|ZP_07569220.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
 gi|307291836|ref|ZP_07571707.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|312901869|ref|ZP_07761134.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
 gi|312903474|ref|ZP_07762654.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|312907694|ref|ZP_07766685.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
 gi|312910312|ref|ZP_07769159.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
 gi|312951656|ref|ZP_07770551.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|29343740|gb|AAO81501.1| cold-shock domain family protein [Enterococcus faecalis V583]
 gi|227073604|gb|EEI11567.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis TX0104]
 gi|227177338|gb|EEI58310.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis HH22]
 gi|229305123|gb|EEN71119.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis ATCC 29200]
 gi|229309230|gb|EEN75217.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis TX1322]
 gi|255963656|gb|EET96132.1| cold shock protein [Enterococcus faecalis T1]
 gi|256598746|gb|EEU17922.1| cold shock protein [Enterococcus faecalis ATCC 4200]
 gi|256683906|gb|EEU23601.1| cold shock protein [Enterococcus faecalis T3]
 gi|256711740|gb|EEU26778.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
 gi|256949631|gb|EEU66263.1| cold shock protein [Enterococcus faecalis DS5]
 gi|256952267|gb|EEU68899.1| cold shock protein [Enterococcus faecalis Merz96]
 gi|256955465|gb|EEU72097.1| cold shock protein [Enterococcus faecalis HIP11704]
 gi|256987197|gb|EEU74499.1| cold shock protein [Enterococcus faecalis JH1]
 gi|256990427|gb|EEU77729.1| cold-shock domain-containing protein [Enterococcus faecalis
          E1Sol]
 gi|256993059|gb|EEU80361.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|256995042|gb|EEU82344.1| cold shock protein [Enterococcus faecalis D6]
 gi|256998852|gb|EEU85372.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257158074|gb|EEU88034.1| cold shock protein [Enterococcus faecalis ARO1/DG]
 gi|257161279|gb|EEU91239.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257164281|gb|EEU94241.1| cold shock protein [Enterococcus faecalis X98]
 gi|291079268|gb|EFE16632.1| cold-shock domain protein [Enterococcus faecalis R712]
 gi|291081793|gb|EFE18756.1| cold-shock domain protein [Enterococcus faecalis S613]
 gi|294453513|gb|EFG21914.1| major cold shock protein CspA [Enterococcus faecalis PC1.1]
 gi|295113106|emb|CBL31743.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76]
 gi|300849243|gb|EFK76993.1| cold shock protein CspD [Enterococcus faecalis TUSoD Ef11]
 gi|306497102|gb|EFM66648.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|306499973|gb|EFM69334.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
 gi|306507505|gb|EFM76636.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|306510049|gb|EFM79073.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|306514157|gb|EFM82733.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|310626722|gb|EFQ10005.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
 gi|310630373|gb|EFQ13656.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|310633350|gb|EFQ16633.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|311289585|gb|EFQ68141.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
 gi|311291062|gb|EFQ69618.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
 gi|315027882|gb|EFT39814.1| major cold shock protein CspA [Enterococcus faecalis TX2137]
 gi|315029541|gb|EFT41473.1| major cold shock protein CspA [Enterococcus faecalis TX4000]
 gi|315032014|gb|EFT43946.1| major cold shock protein CspA [Enterococcus faecalis TX0017]
 gi|315037138|gb|EFT49070.1| major cold shock protein CspA [Enterococcus faecalis TX0027]
 gi|315144965|gb|EFT88981.1| major cold shock protein CspA [Enterococcus faecalis TX2141]
 gi|315147421|gb|EFT91437.1| major cold shock protein CspA [Enterococcus faecalis TX4244]
 gi|315150754|gb|EFT94770.1| major cold shock protein CspA [Enterococcus faecalis TX0012]
 gi|315152323|gb|EFT96339.1| major cold shock protein CspA [Enterococcus faecalis TX0031]
 gi|315156124|gb|EFU00141.1| major cold shock protein CspA [Enterococcus faecalis TX0043]
 gi|315158234|gb|EFU02251.1| major cold shock protein CspA [Enterococcus faecalis TX0312]
 gi|315162357|gb|EFU06374.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
 gi|315163878|gb|EFU07895.1| major cold shock protein CspA [Enterococcus faecalis TX1302]
 gi|315168876|gb|EFU12893.1| major cold shock protein CspA [Enterococcus faecalis TX1341]
 gi|315169617|gb|EFU13634.1| major cold shock protein CspA [Enterococcus faecalis TX1342]
 gi|315172434|gb|EFU16451.1| major cold shock protein CspA [Enterococcus faecalis TX1346]
 gi|315576063|gb|EFU88254.1| major cold shock protein CspA [Enterococcus faecalis TX0309B]
 gi|315577830|gb|EFU90021.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
 gi|315580638|gb|EFU92829.1| major cold shock protein CspA [Enterococcus faecalis TX0309A]
 gi|323480885|gb|ADX80324.1| cold shock protein CspD [Enterococcus faecalis 62]
 gi|327535290|gb|AEA94124.1| cold shock protein CspA [Enterococcus faecalis OG1RF]
 gi|329571878|gb|EGG53556.1| major cold shock protein CspA [Enterococcus faecalis TX1467]
          Length = 68

 Score = 40.8 bits (94), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G +KW++  KGYGFI         D++F+H +A+   G  +L E Q V ++ ++
Sbjct: 1  MQKGIVKWFDNRKGYGFIV----YNEEDEIFVHFTAIEGDGFKSLDENQSVEFEIME 53


>gi|325926682|ref|ZP_08187995.1| putative membrane protein [Xanthomonas perforans 91-118]
 gi|325542917|gb|EGD14367.1| putative membrane protein [Xanthomonas perforans 91-118]
          Length = 204

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  +N  KG+GF+TP G    GD  F+H SA A        +G+++TY  ++ D
Sbjct: 1  MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQTR-RPRDGEIITYA-IERD 55

Query: 61 ANGKYSAENLKLVPKSS 77
          A+ + +A  ++   +++
Sbjct: 56 AHKRLNATQVRWADRTT 72


>gi|300932619|ref|ZP_07147875.1| cold shock protein [Corynebacterium resistens DSM 45100]
          Length = 127

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KWY+ D+GYGF++  G     +DV++  S V   G+  L +GQ + Y++V
Sbjct: 4  GRVKWYDADRGYGFVSNPGD----EDVYVG-SQVLPDGVDELVKGQRMEYEFV 51


>gi|170761472|ref|YP_001787094.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169408461|gb|ACA56872.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 69

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
          +H G++KW++ ++GYGFI    S  +G DV++H   +       +L EG+ V +D V+ +
Sbjct: 3  MHTGTVKWFDNERGYGFI----SGNNGKDVYVHSMQIKEKTHNKDLHEGEEVLFDIVEKE 58


>gi|110763831|ref|XP_393344.3| PREDICTED: hypothetical protein LOC409854 [Apis mellifera]
          Length = 279

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS----AGLFNLTEGQLVTYDYV 57
          G++KW+N   GYGFI      ++ +DVF+H+SA+        + ++ +G++V +D V
Sbjct: 26 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVV 79


>gi|82802831|gb|ABB92461.1| rcNSEP1 [Pan troglodytes]
          Length = 319

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 7/64 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 57  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 113

Query: 61  ANGK 64
              K
Sbjct: 114 KGAK 117


>gi|119025588|ref|YP_909433.1| cold shock protein [Bifidobacterium adolescentis ATCC 15703]
 gi|154487048|ref|ZP_02028455.1| hypothetical protein BIFADO_00886 [Bifidobacterium adolescentis
          L2-32]
 gi|118765172|dbj|BAF39351.1| cold shock protein [Bifidobacterium adolescentis ATCC 15703]
 gi|154084911|gb|EDN83956.1| hypothetical protein BIFADO_00886 [Bifidobacterium adolescentis
          L2-32]
          Length = 130

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G ++W++ +KGYGFI    + ES DDVFL  +A+   G+  L +G  V Y  +
Sbjct: 4  GRVRWFDANKGYGFIQ---TGESTDDVFLPAAALPE-GVKTLRKGAKVEYSVI 52


>gi|291224890|ref|XP_002732435.1| PREDICTED: cold shock domain protein A short-like [Saccoglossus
          kowalevskii]
          Length = 283

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+
Sbjct: 26 GTVKWFNVKNGYGFIN---RNDTNEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 80


>gi|213512942|ref|NP_001133216.1| Y-box binding protein-2 [Salmo salar]
 gi|197632619|gb|ACH71033.1| Y-box binding protein-2 [Salmo salar]
          Length = 301

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D V+ +
Sbjct: 42 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 98


>gi|325286552|ref|YP_004262342.1| cold-shock DNA-binding domain-containing protein [Cellulophaga
          lytica DSM 7489]
 gi|324322006|gb|ADY29471.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM
          7489]
          Length = 77

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 6/50 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++K+YN  KGYGFIT +   E+G D+F+H +++       L EG  V Y
Sbjct: 17 GTVKFYNDSKGYGFITND---ETGKDIFVHATSLNGV---ELNEGDKVEY 60


>gi|307209281|gb|EFN86372.1| Y-box factor-like protein [Harpegnathos saltator]
          Length = 278

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57
          G++KW+N   GYGFI      ++ +DVF+H+SA+        + ++ +G++V +D V
Sbjct: 26 GTVKWFNVKSGYGFIN---RNDTREDVFVHQSAIIKNNPRKAVRSVGDGEVVEFDVV 79


>gi|78048088|ref|YP_364263.1| hypothetical protein XCV2532 [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|78036518|emb|CAJ24209.1| putative membrane protein [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
          Length = 204

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  +N  KG+GF+TP G    GD  F+H SA A        +G+++TY  ++ D
Sbjct: 1  MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFARQTR-RPRDGEIITYA-IERD 55

Query: 61 ANGKYSAENLKLVPKSS 77
          A+ + +A  ++   +++
Sbjct: 56 AHKRLNATQVRWADRTT 72


>gi|1402771|gb|AAC80254.1| major cold-shock protein [Staphylococcus aureus RN4220]
 gi|1402781|gb|AAC80256.1| major cold-shock protein [Staphylococcus intermedius]
          Length = 45

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D
Sbjct: 1  EKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQAVEFEVVEGD 44


>gi|322806010|emb|CBZ03577.1| cold shock protein CspD [Clostridium botulinum H04402 065]
          Length = 69

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
          +H G++KW++ ++GYGFI    S  +G DV++H   +       +L EG+ V +D V+ +
Sbjct: 3  MHTGTVKWFDNERGYGFI----SGNNGKDVYVHSMQIKEKTHNKDLHEGEEVLFDIVEKE 58


>gi|296271245|ref|YP_003653877.1| cold-shock DNA-binding domain-containing protein [Thermobispora
          bispora DSM 43833]
 gi|296094032|gb|ADG89984.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM
          43833]
          Length = 131

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KWY+ +KG+GF+T     + G +VF+H S+V   G+  L  GQ V +
Sbjct: 4  GKVKWYDAEKGFGFLT----RDDGGEVFVH-SSVLPKGVTALKPGQKVEF 48


>gi|301620234|ref|XP_002939486.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 214

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K ++  KG+GFITP    + G D+FLH S +   G +   EG  VTY       
Sbjct: 129 VYKGVCKCFSRSKGHGFITP---VDGGPDIFLHISDI--EGEYVPAEGDEVTYKVCTVPP 183

Query: 61  ANGKYSAENLKL 72
            N K+ A  +K+
Sbjct: 184 KNEKHQAVEVKI 195


>gi|330993460|ref|ZP_08317395.1| Cold shock-like protein CspA [Gluconacetobacter sp. SXCC-1]
 gi|329759490|gb|EGG75999.1| Cold shock-like protein CspA [Gluconacetobacter sp. SXCC-1]
          Length = 49

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 26 ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
          + G DVF+H +AV +AGL  L E Q V+YD       GK +A NLK
Sbjct: 4  DGGKDVFVHITAVQAAGLRGLNEDQAVSYDIAME--RGKAAATNLK 47


>gi|295838145|ref|ZP_06825078.1| cold-shock domain family protein [Streptomyces sp. SPB74]
 gi|295826890|gb|EFG65133.1| cold-shock domain family protein [Streptomyces sp. SPB74]
          Length = 127

 Score = 40.8 bits (94), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H SA+    +  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVHSSALPQ-DVETLKPGQRVEFGVV 51


>gi|293400347|ref|ZP_06644493.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291306747|gb|EFE47990.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 65

 Score = 40.8 bits (94), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G +K +N +KGYGFIT     E G DVF H S +   G   +     V ++ V+ +
Sbjct: 2  QGKVKMFNQEKGYGFIT----LEDGRDVFFHYSQLMMEGFKTIDADAKVEFELVETE 54


>gi|78186480|ref|YP_374523.1| cold-shock DNA-binding domain-containing protein [Chlorobium
          luteolum DSM 273]
 gi|78166382|gb|ABB23480.1| cold-shock DNA-binding protein family [Chlorobium luteolum DSM
          273]
          Length = 89

 Score = 40.8 bits (94), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 4  RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          R  +KW++  KGYGFI  PEG    G+D+F+H SA+ S   F +   Q    D+  +   
Sbjct: 3  RSKVKWFDGKKGYGFILHPEG----GEDIFVHFSAIESDQPFKVL-NQDADVDFEIDTTQ 57

Query: 63 GKYSAENLK 71
              A+N++
Sbjct: 58 KGLQAKNVR 66


>gi|319953293|ref|YP_004164560.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
 gi|319421953|gb|ADV49062.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
          Length = 64

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 6/51 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++K+YN  KGYGFIT +    +G D+F+H +++  A    L EG  V Y+
Sbjct: 3  GTVKFYNGSKGYGFITND---NTGKDIFVHATSLNGA---ELNEGDQVEYE 47


>gi|296118317|ref|ZP_06836898.1| cold-shock domain protein [Corynebacterium ammoniagenes DSM
          20306]
 gi|295968875|gb|EFG82119.1| cold-shock domain protein [Corynebacterium ammoniagenes DSM
          20306]
          Length = 127

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KG+GF++  G     +DV++ R+ V   G+  L +GQ + +D+    A G+
Sbjct: 4  GKVKWFDAEKGFGFVSNPGD----EDVYVGRN-VLPEGVEELVQGQRIEFDF----AAGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 RGPQALRV 62


>gi|163839253|ref|YP_001623658.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
 gi|162952729|gb|ABY22244.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
          Length = 119

 Score = 40.4 bits (93), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 9/66 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ DKG+GF+T    ++ G +VFLH +A+  AG+  +  G  + +      A+GK
Sbjct: 4  GKVKWFDNDKGFGFLT----SDEGQEVFLHANAL-PAGVKEIKVGTRMEFGV----ADGK 54

Query: 65 YSAENL 70
            A+ L
Sbjct: 55 KGAQAL 60


>gi|322511335|gb|ADX06644.1| putative cold-shock protein CspD [Organic Lake phycodnavirus]
          Length = 88

 Score = 40.4 bits (93), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GF+      E+G + F H S + + G   L  G+ V+ + +  D N K  
Sbjct: 4  VKWFNKRKGFGFVL----DETGTEYFCHHSDICNDGYKYLRAGEYVSGEVINMDGNKKKL 59

Query: 67 AENLKLVP 74
          ++    VP
Sbjct: 60 SKICPPVP 67


>gi|313214830|emb|CBY41075.1| unnamed protein product [Oikopleura dioica]
 gi|313231198|emb|CBY08313.1| unnamed protein product [Oikopleura dioica]
          Length = 292

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          GS+KW+N   GYGFI  + + E   DVF+H++A+        L ++ +G+ V +D V+
Sbjct: 43 GSVKWFNVRNGYGFIHRDDTDE---DVFVHQTAIVKNNPKKFLRSVGDGEKVVFDVVE 97


>gi|313126739|ref|YP_004037009.1| cold-shock DNA-binding protein family [Halogeometricum
          borinquense DSM 11551]
 gi|312293104|gb|ADQ67564.1| cold-shock DNA-binding protein family [Halogeometricum
          borinquense DSM 11551]
          Length = 64

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 8/68 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++ ++N   GYGFI  E S E   DVF H   V      +L EGQ V +D  Q D   
Sbjct: 3  KGTVAFFNDTGGYGFIESEDSDE---DVFFHMEDVGGP---DLEEGQEVEFDIEQADKGP 56

Query: 64 KYSAENLK 71
          +  A+NL+
Sbjct: 57 R--AKNLQ 62


>gi|163750506|ref|ZP_02157745.1| cold shock domain family protein [Shewanella benthica KT99]
 gi|161329827|gb|EDQ00815.1| cold shock domain family protein [Shewanella benthica KT99]
          Length = 198

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          ++W N DKG+GFI PE  T +G DVF+H S +       +  G  + Y   Q  A+GK+ 
Sbjct: 9  VRWKN-DKGFGFIEPE--TANGKDVFIHISELKHMARKPIV-GDSIEY-RTQQQADGKFK 63

Query: 67 AENLKL 72
          A N  +
Sbjct: 64 AINASI 69


>gi|91217017|ref|ZP_01253980.1| cold shock protein [Psychroflexus torquis ATCC 700755]
 gi|91184888|gb|EAS71268.1| cold shock protein [Psychroflexus torquis ATCC 700755]
          Length = 63

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K++N  KGYGFIT +   E+G+D+F+H + +      +L EG  V Y+  + +   
Sbjct: 2  QGKVKFFNESKGYGFITND---ETGEDIFVHVTGLNGE---SLNEGDEVEYN--EEEGRK 53

Query: 64 KYSAENLKLV 73
            +A +++L+
Sbjct: 54 GMNASDVRLI 63


>gi|3821915|gb|AAC69699.1| major cold shock protein [Lactococcus lactis subsp. cremoris]
 gi|3821919|gb|AAC69701.1| major cold shock protein [Lactococcus lactis subsp. cremoris]
          Length = 50

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          KG+GFIT    +E G D+F H SA+ S G   L EGQ V +D
Sbjct: 1  KGFGFIT----SEEGKDLFAHFSAIQSDGFKTLDEGQKVEFD 38


>gi|302520002|ref|ZP_07272344.1| cold shock protein B [Streptomyces sp. SPB78]
 gi|318061816|ref|ZP_07980537.1| putative cold shock protein [Streptomyces sp. SA3_actG]
 gi|318079283|ref|ZP_07986615.1| putative cold shock protein [Streptomyces sp. SA3_actF]
 gi|302428897|gb|EFL00713.1| cold shock protein B [Streptomyces sp. SPB78]
          Length = 127

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +KW+N +KG+GF+    S + G DVF+H SA+    +  L  GQ V +  V
Sbjct: 4  GKVKWFNSEKGFGFL----SRDDGGDVFVHSSALPQ-DVETLKPGQRVEFGVV 51


>gi|14270383|emb|CAC39436.1| cold-shock domain protein [Oryzias latipes]
          Length = 366

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 7/59 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D ++
Sbjct: 4  QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIE 59


>gi|1402765|gb|AAC80248.1| major cold-shock protein [Pediococcus pentosaceus]
          Length = 45

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D
Sbjct: 1  EKGFGFIEVEGE----NDVFVHVSAINQDGYKSLEEGQSVEFEVVEGD 44


>gi|293396764|ref|ZP_06641040.1| cold shock protein [Serratia odorifera DSM 4582]
 gi|291421028|gb|EFE94281.1| cold shock protein [Serratia odorifera DSM 4582]
          Length = 73

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          ++  G +KWY+  +GYG I+P    +  D++++ R A+A+    +L EGQ V +
Sbjct: 6  VLKMGRVKWYDQAEGYGVISP---VDGSDEIYVSRRAIANTKNKSLNEGQNVEF 56


>gi|1083796|pir||S48055 RYB-a protein - rat
          Length = 291

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 84  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGE 140


>gi|296277238|ref|ZP_06859745.1| cold shock protein [Staphylococcus aureus subsp. aureus MR1]
          Length = 55

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 4/46 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +KG+GFI      E+G DVF+H S +AS G   L EGQ VT++  +
Sbjct: 1  EKGFGFI----EQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITE 42


>gi|254469479|ref|ZP_05082884.1| cold shock protein [Pseudovibrio sp. JE062]
 gi|211961314|gb|EEA96509.1| cold shock protein [Pseudovibrio sp. JE062]
          Length = 193

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ V   +  +   GK 
Sbjct: 121 EVKWFNRVKGFGFLT---RGEGTEDIFIHMETLRRFGITELRPGQKVQVRF-GDGPKGKM 176

Query: 66  SAE 68
           +AE
Sbjct: 177 AAE 179



 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+IKW++  KGYGF+ PE   +   DV LH + +   G     EG  V  + V N   G 
Sbjct: 28 GTIKWFDIGKGYGFVEPE---DDLPDVLLHVTCLRRDGYQTAYEGARVVCE-VLNRPRGL 83

Query: 65 YSAENLKL 72
           +   L +
Sbjct: 84 QAMRILSM 91


>gi|220911683|ref|YP_002486992.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|219858561|gb|ACL38903.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
          Length = 127

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ DKG+GF+    + E G +VFL +S++   G+  L  G  V +      A+G+
Sbjct: 4  GKVKWYDKDKGFGFL----AGEDGQEVFLPKSSLPE-GVTELKAGTRVEFGV----ADGR 54

Query: 65 YSAENLKL 72
            A+ L L
Sbjct: 55 KGAQALGL 62


>gi|167461595|ref|ZP_02326684.1| putative cold-shock DNA-binding domain protein [Paenibacillus
          larvae subsp. larvae BRL-230010]
          Length = 59

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
          N +KG+GFI      E G+DVF+H S++   G  +L EGQ V ++  Q   N    AEN+
Sbjct: 1  NAEKGFGFI----EIEQGNDVFVHFSSIEGDGYKSLDEGQRVQFNVTQ--GNRGPQAENV 54

Query: 71 KLV 73
            V
Sbjct: 55 SKV 57


>gi|219130830|ref|XP_002185558.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402966|gb|EEC42923.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 297

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 4/34 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSA 37
          G +K+Y  DKGYGFIT +G   +GD D+FLHR+A
Sbjct: 35 GKVKFYLRDKGYGFITADG---AGDGDIFLHRTA 65


>gi|505133|dbj|BAA05907.1| RYB-a [Rattus norvegicus]
          Length = 291

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 84  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGE 140


>gi|161612267|gb|AAI55915.1| FRGY2 protein [Xenopus laevis]
          Length = 342

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 7/61 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 43  QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99

Query: 60  D 60
           +
Sbjct: 100 E 100


>gi|532211|gb|AAC34193.1| Y-box binding protein [Mus musculus]
          Length = 274

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 71  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 127


>gi|116669355|ref|YP_830288.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
          FB24]
 gi|116609464|gb|ABK02188.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
          Length = 127

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF+    + E G +VFL +SA+   G+  L  G  V +      A+G+
Sbjct: 4  GKVKWYDKEKGFGFL----AGEDGQEVFLPKSALPE-GVTELKAGTRVEFGV----ADGR 54

Query: 65 YSAENLKL 72
            A+ L L
Sbjct: 55 KGAQALGL 62


>gi|289641675|ref|ZP_06473835.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
 gi|289508544|gb|EFD29483.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
          Length = 131

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++ DKG+GF+    S + G DVF+H++A+   G+  L  G  V +
Sbjct: 4  GRVKWFDVDKGFGFL----SRDDGGDVFVHKAAL-PPGVDRLKPGDRVEF 48


>gi|146197784|dbj|BAF57611.1| Y-Box factor protein [Dugesia japonica]
          Length = 178

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 6/57 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYDYVQ 58
          G +KWYN  KGYGFI  +   E   DVF+H+SA++        +L E + V +D V+
Sbjct: 5  GKVKWYNVKKGYGFIHRDDVDE---DVFVHQSAISRCQPGKQKSLGEDEDVLFDVVK 58


>gi|1402735|gb|AAC80235.1| major cold-shock protein [Bacillus atrophaeus]
          Length = 45

 Score = 40.4 bits (93), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          KG GFI      E+GDDVF+H SA+   G  +L EG+ V++D  Q
Sbjct: 2  KGSGFI----EREAGDDVFVHFSAIQGEGFKSLEEGESVSFDVEQ 42


>gi|51245919|ref|YP_065803.1| hypothetical protein DP2067 [Desulfotalea psychrophila LSv54]
 gi|50876956|emb|CAG36796.1| hypothetical cold-shock protein [Desulfotalea psychrophila LSv54]
          Length = 204

 Score = 40.4 bits (93), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+IK +N +KGYGFITP+     G+DVFLH  A           GQ+++Y     D  G+
Sbjct: 4  GTIKHWNDEKGYGFITPD---NGGNDVFLHIKAFKKRP-HRPEIGQVISYGTTSGD-KGR 58

Query: 65 YSAENLKLVPKSSN 78
            A N++ +   S+
Sbjct: 59 LRACNVQYMEDKSS 72


>gi|157369959|ref|YP_001477948.1| cold-shock DNA-binding domain-containing protein [Serratia
          proteamaculans 568]
 gi|157321723|gb|ABV40820.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
          Length = 73

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          ++  G +KW++   GYGFI+P    +  D++++ R ++A+    +L EGQ V +
Sbjct: 6  VLQMGRVKWFDQAAGYGFISP---VDGSDEIYVSRRSIANTKNKSLNEGQNVEF 56


>gi|1160331|dbj|BAA03376.1| dbpA murine homologue [Mus musculus]
          Length = 308

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141


>gi|227356797|ref|ZP_03841182.1| cold shock protein Csp [Proteus mirabilis ATCC 29906]
 gi|227163087|gb|EEI48022.1| cold shock protein Csp [Proteus mirabilis ATCC 29906]
          Length = 88

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ +KGYG I  +   +   D+++++ A+A+     LTEGQ V +  ++  A
Sbjct: 22 LRMGRVKWFDNNKGYGLIVAKDLEQ---DIYVNKKAIANTKNKALTEGQDVEFSVIKTAA 78


>gi|148255425|ref|YP_001240010.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
           BTAi1]
 gi|146407598|gb|ABQ36104.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
          Length = 217

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V   Y
Sbjct: 142 LERAQVKWFNRLRGFGFVT---CGEGTPDIFVHMETLRRFGMTELRPGQWVLVRY 193



 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  + VQ 
Sbjct: 53  GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVVECVQR 104


>gi|327272546|ref|XP_003221045.1| PREDICTED: cold shock domain-containing protein C2-like [Anolis
           carolinensis]
          Length = 153

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  TE   D+F+H S +   G +   EG +VTY       
Sbjct: 68  VFKGVCKQFSRSQGHGFITPENGTE---DIFVHVSDI--EGEYVPVEGDVVTYKICPIPP 122

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 123 KNQKFQAVEVVL 134


>gi|326912755|ref|XP_003202712.1| PREDICTED: nuclease-sensitive element-binding protein 1-like
           [Meleagris gallopavo]
          Length = 253

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 45  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 101


>gi|313221374|emb|CBY32128.1| unnamed protein product [Oikopleura dioica]
 gi|313241319|emb|CBY33595.1| unnamed protein product [Oikopleura dioica]
          Length = 270

 Score = 40.4 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 10/60 (16%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG------LFNLTEGQLVTYDYVQ 58
           G++KW+N  +G+GFI      + G DVFLH+S V  +G      LF L  G+ V +D  Q
Sbjct: 87  GTVKWFNISRGFGFIE---RNDGGADVFLHQSGVVGSGRRHRFSLF-LKGGEEVEFDVAQ 142


>gi|33875177|gb|AAH00064.1| YBX1 protein [Homo sapiens]
 gi|47939143|gb|AAH72014.1| YBX1 protein [Homo sapiens]
          Length = 266

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117


>gi|255084065|ref|XP_002508607.1| predicted protein [Micromonas sp. RCC299]
 gi|226523884|gb|ACO69865.1| predicted protein [Micromonas sp. RCC299]
          Length = 303

 Score = 40.4 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +NP +G+GFITP+   + G+D+F H S++    + N  EG  V YD   +D  GK  AE 
Sbjct: 81  WNP-RGFGFITPD---QGGEDLFCHFSSITDGNMLN--EGARVEYDESFDDRKGKPRAER 134

Query: 70  L 70
           +
Sbjct: 135 V 135


>gi|212716929|ref|ZP_03325057.1| hypothetical protein BIFCAT_01873 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225352748|ref|ZP_03743771.1| hypothetical protein BIFPSEUDO_04378 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|212660214|gb|EEB20789.1| hypothetical protein BIFCAT_01873 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225156355|gb|EEG69924.1| hypothetical protein BIFPSEUDO_04378 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 129

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G ++W++ +KGYGFI      E G DVFL  +A+   G+  L +G  V Y  V+
Sbjct: 4  GRVRWFDANKGYGFI----QNEQGADVFLPAAALPE-GVKTLRKGAKVEYSVVE 52


>gi|146340625|ref|YP_001205673.1| putative DNA binding cold shock protein, CspA-like [Bradyrhizobium
           sp. ORS278]
 gi|146193431|emb|CAL77447.1| Putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium
           sp. ORS278]
          Length = 217

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V   Y
Sbjct: 142 LERAQVKWFNRLRGFGFVT---CGEGTPDIFVHMETLRRFGMTELRPGQWVLVRY 193



 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  + VQ 
Sbjct: 53  GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVVECVQR 104


>gi|302532749|ref|ZP_07285091.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302441644|gb|EFL13460.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 71

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
          G++KW+N +KG+GFI+ +   + G DVF+H S +   G F    G+
Sbjct: 4  GTVKWFNSEKGFGFISQD---DGGPDVFVHFSPIPGDGAFKSPGGE 46


>gi|38142418|dbj|BAC99313.2| brain Y-box binding protein 1 [Rattus norvegicus]
          Length = 322

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEEE 115


>gi|330448523|ref|ZP_08312171.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492714|dbj|GAA06668.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
          Length = 204

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39
          M  +G I  +N  KG+GFI+P+     GDDVF H SA+A
Sbjct: 1  MTQKGKIISWNQQKGFGFISPD---NGGDDVFFHVSALA 36


>gi|227548331|ref|ZP_03978380.1| cold shock protein [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079649|gb|EEI17612.1| cold shock protein [Corynebacterium lipophiloflavum DSM 44291]
          Length = 127

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ DKG+GF     S    +DVF+ +  V   G+  L  GQ + +D+    A G+
Sbjct: 4  GKVKWYDADKGFGF----ASNPGDEDVFVGKK-VLPEGVEELVAGQRIEFDF----AAGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 RGPQALRV 62


>gi|170728619|ref|YP_001762645.1| cold-shock DNA-binding domain-containing protein [Shewanella
          woodyi ATCC 51908]
 gi|169813966|gb|ACA88550.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
          51908]
          Length = 206

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 10/57 (17%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH--------RSAVASAGLFNLTEGQ 50
          + RG++  +N +KG+GFI PE  T +G DVF+H        R  V   G+  LTE Q
Sbjct: 1  MERGTLVRWNDEKGFGFIKPE--TGNGKDVFIHISALKHMARKPVIGDGILFLTEQQ 55


>gi|988281|gb|AAA75475.1| mYB-1a [Mus musculus]
          Length = 322

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+
Sbjct: 59  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 113


>gi|148231227|ref|NP_001080330.1| B box-binding protein [Xenopus laevis]
 gi|140247|sp|Q00436|YB3_XENLA RecName: Full=B box-binding protein; AltName: Full=Protein YB3
 gi|65271|emb|CAA42778.1| YB3 [Xenopus laevis]
          Length = 305

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 39 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95


>gi|326932610|ref|XP_003212408.1| PREDICTED: nuclease-sensitive element-binding protein 1-like,
          partial [Meleagris gallopavo]
          Length = 134

 Score = 40.4 bits (93), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 6  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 62


>gi|62859889|ref|NP_001016677.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis]
 gi|89267862|emb|CAJ82694.1| Nuclease sensitive element binding protein 1 [Xenopus (Silurana)
          tropicalis]
 gi|89268717|emb|CAJ83277.1| Nuclease sensitive element binding protein 1 [Xenopus (Silurana)
          tropicalis]
 gi|213624244|gb|AAI70833.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis]
 gi|213625546|gb|AAI70835.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis]
          Length = 306

 Score = 40.4 bits (93), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 39 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95


>gi|301784071|ref|XP_002927454.1| PREDICTED: hypothetical protein LOC100472801 [Ailuropoda
           melanoleuca]
          Length = 371

 Score = 40.4 bits (93), Expect = 0.093,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 62  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118


>gi|298248814|ref|ZP_06972619.1| cold-shock DNA-binding domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297551473|gb|EFH85339.1| cold-shock DNA-binding domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 278

 Score = 40.4 bits (93), Expect = 0.093,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + +G ++W++P+ G G I  E   E+G+++F H +A+   G   +  G  V ++ V+  A
Sbjct: 210 IAQGVVRWFDPNAGIGIIVRE---EAGEEIFFHFTALPGQGYRTIRAGVPVQFEIVEGRA 266

Query: 62  NGKYSAENLKLV 73
               +A N++ +
Sbjct: 267 G--LAARNIQQI 276


>gi|217976738|ref|YP_002360885.1| cold-shock DNA-binding domain protein [Methylocella silvestris
          BL2]
 gi|217502114|gb|ACK49523.1| cold-shock DNA-binding domain protein [Methylocella silvestris
          BL2]
          Length = 189

 Score = 40.4 bits (93), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G IKW++  KGYGFITP+   + G DV LH + +   G     EG  +  +  + 
Sbjct: 28 GEIKWFDVAKGYGFITPD---DGGPDVLLHVTILRRDGYAAAHEGARIVCEAARR 79



 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
           +KW+N  KG+GF+T    TE   D+F+H   +   G+  L  G+
Sbjct: 120 VKWFNRMKGFGFLTRGDGTE---DIFIHMETLRHYGIGELRPGE 160


>gi|116283293|gb|AAH18393.1| YBX1 protein [Homo sapiens]
          Length = 267

 Score = 40.4 bits (93), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117


>gi|2502064|gb|AAB80761.1| Y-box binding protein A [Columba livia]
          Length = 278

 Score = 40.4 bits (93), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 70  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQAAIKKNNPRKYLRSVGDGETVEFDVVEGE 126


>gi|158934472|emb|CAL64870.1| putative RlYB2 protein [Rana lessonae]
          Length = 327

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 37 QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 93

Query: 60 D 60
          +
Sbjct: 94 E 94


>gi|55820885|ref|YP_139327.1| cold shock protein A [Streptococcus thermophilus LMG 18311]
 gi|55736870|gb|AAV60512.1| cold shock protein A [Streptococcus thermophilus LMG 18311]
          Length = 69

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G+I W+N DKG GFI  +       DVF +  ++         EGQ VT+D ++  +
Sbjct: 4  MNKGTINWFNADKGCGFIMADDMQ----DVFAYLISIQGNDFKKYDEGQKVTFD-IKMTS 58

Query: 62 NGKYSA 67
           G+Y +
Sbjct: 59 RGRYDS 64


>gi|158312011|ref|YP_001504519.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
          EAN1pec]
 gi|158107416|gb|ABW09613.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
          Length = 132

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 6/51 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KW++ D+G+GF+    S + GD DVF+H++A+ S G+  L  G  V +
Sbjct: 4  GKVKWFDVDRGFGFL----SRDDGDADVFVHKAALPS-GVDRLKPGDRVEF 49


>gi|331009020|gb|EGH89076.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          tabaci ATCC 11528]
          Length = 53

 Score = 40.0 bits (92), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ
Sbjct: 1  FGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 39


>gi|159162382|pdb|1H95|A Chain A, Solution Structure Of The Single-Stranded Dna-Binding
          Cold Shock Domain (Csd) Of Human Y-Box Protein 1 (Yb1)
          Determined By Nmr (10 Lowest Energy Structures)
          Length = 79

 Score = 40.0 bits (92), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 11 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 67


>gi|237805445|ref|ZP_04592149.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331026552|gb|EGI06607.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 31

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 24/31 (77%), Gaps = 4/31 (12%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFL 33
            G++KW+N +KG+GFITP    +SGDD+F+
Sbjct: 5  QTGTVKWFNDEKGFGFITP----QSGDDLFV 31


>gi|51494815|gb|AAH27785.1| Csda protein [Mus musculus]
          Length = 299

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141


>gi|295136384|ref|YP_003587060.1| cold shock protein [Zunongwangia profunda SM-A87]
 gi|294984399|gb|ADF54864.1| cold shock protein [Zunongwangia profunda SM-A87]
          Length = 64

 Score = 40.0 bits (92), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KGYGFIT +   ++G D+F+H + +       L EG  V  +YV+ +    
Sbjct: 3  GTVKFFNESKGYGFITND---DTGRDIFVHVTGIDGE---TLNEGDKV--EYVEKEGRKG 54

Query: 65 YSAENLKLV 73
           +A+ ++++
Sbjct: 55 LNADQVRVI 63


>gi|110598176|ref|ZP_01386453.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
 gi|110340190|gb|EAT58688.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
          Length = 72

 Score = 40.0 bits (92), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 4  RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          +  +KW++  KGYGFI  P+G    G+D+F+H S + S   F     Q    D+  +D+ 
Sbjct: 3  KSVVKWFDGKKGYGFIVNPDG----GEDIFVHYSTIDSVHRFKFL-NQDAEVDFELDDSK 57

Query: 63 GKYSAENLKLVPKSS 77
           +  A  +K +  +S
Sbjct: 58 QRLQARYVKEISIAS 72


>gi|194333568|ref|YP_002015428.1| cold-shock DNA-binding domain-containing protein
          [Prosthecochloris aestuarii DSM 271]
 gi|194311386|gb|ACF45781.1| cold-shock DNA-binding domain protein [Prosthecochloris aestuarii
          DSM 271]
          Length = 95

 Score = 40.0 bits (92), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNL 46
          M  +  +KW++  KGYGFI  PEG    G+D+F+H SA+ S   F +
Sbjct: 1  MPIKSKVKWFDGKKGYGFILNPEG----GEDIFVHFSAIVSDLTFKV 43


>gi|308153249|ref|NP_001015806.2| protein lin-28 homolog A isoform 1 [Xenopus (Silurana)
          tropicalis]
          Length = 188

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGS-TESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF+T    EG+  E+  DVF+H+S +   G  +L EG+ V + +
Sbjct: 29 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTF 84


>gi|300710595|ref|YP_003736409.1| cold shock protein [Halalkalicoccus jeotgali B3]
 gi|299124278|gb|ADJ14617.1| cold shock protein [Halalkalicoccus jeotgali B3]
          Length = 64

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++ ++N   GYGFI  E S E   DVF H   V      +L EGQ V +D  Q D
Sbjct: 3  KGTVDFFNDTGGYGFIDSEDSEE---DVFFHMEDVGGP---DLEEGQEVEFDIEQAD 53


>gi|110667820|ref|YP_657631.1| cold shock protein [Haloquadratum walsbyi DSM 16790]
 gi|109625567|emb|CAJ51994.1| probable cold shock protein [Haloquadratum walsbyi DSM 16790]
          Length = 64

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++ ++N   GYGFI  E S E   DVF H   V      +L EGQ V +D  Q D
Sbjct: 3  KGTVAFFNDTGGYGFIESEDSEE---DVFFHMEDVGGP---DLEEGQEVEFDIEQAD 53


>gi|27503841|gb|AAH42217.1| Nsep1 protein [Xenopus laevis]
          Length = 304

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 39 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95


>gi|73909033|gb|AAI03638.1| Ybx1 protein [Rattus norvegicus]
          Length = 326

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115


>gi|62858881|ref|NP_001016266.1| protein lin-28 homolog A isoform 2 [Xenopus (Silurana)
          tropicalis]
 gi|82230981|sp|Q5EB47|LN28A_XENTR RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
 gi|59809410|gb|AAH90084.1| lin-28 homolog [Xenopus (Silurana) tropicalis]
 gi|89266719|emb|CAJ82571.1| lin-28 homolog (C. elegans) [Xenopus (Silurana) tropicalis]
 gi|195539672|gb|AAI68066.1| lin-28 homolog (C. elegans) [Xenopus (Silurana) tropicalis]
          Length = 195

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGS-TESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF+T    EG+  E+  DVF+H+S +   G  +L EG+ V + +
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTF 91


>gi|156385226|ref|XP_001633532.1| predicted protein [Nematostella vectensis]
 gi|156220603|gb|EDO41469.1| predicted protein [Nematostella vectensis]
          Length = 98

 Score = 40.0 bits (92), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
          G++KW+N   GYGFI  + + E   D+F+H++A+A       L ++ +G++V ++ V
Sbjct: 10 GTVKWFNVKNGYGFINRDDNKE---DIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVV 63


>gi|55451|emb|CAA40847.1| Y box-binbing protein [Mus musculus]
          Length = 321

 Score = 40.0 bits (92), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 58  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114


>gi|189299|gb|AAA59949.1| DNA-binding protein [Homo sapiens]
          Length = 320

 Score = 40.0 bits (92), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 58  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114


>gi|147902111|ref|NP_001081274.1| Y-box-binding protein 2-A [Xenopus laevis]
 gi|288558836|sp|P21574|YBX2A_XENLA RecName: Full=Y-box-binding protein 2-A; AltName: Full=Cytoplasmic
           RNA-binding protein p56; AltName: Full=Frog Y-box
           protein 2; Short=FRG Y2; AltName: Full=Frog Y-box
           protein 2-A; Short=FRGY2a; AltName: Full=Messenger
           ribonucleoprotein particle 4; Short=mRNP4
 gi|214157|gb|AAA49716.1| DNA-binding protein [Xenopus laevis]
 gi|213623410|gb|AAI69706.1| Sequence -specific binding protein [Xenopus laevis]
 gi|213625048|gb|AAI69704.1| Sequence -specific binding protein [Xenopus laevis]
          Length = 336

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 7/61 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 43  QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99

Query: 60  D 60
           +
Sbjct: 100 E 100


>gi|45383329|ref|NP_989745.1| nuclease-sensitive element-binding protein 1 [Gallus gallus]
 gi|516701|dbj|BAA05380.1| unnamed protein product [Gallus gallus]
          Length = 326

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115


>gi|301789934|ref|XP_002930376.1| PREDICTED: DNA-binding protein A-like [Ailuropoda melanoleuca]
          Length = 335

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 58  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114


>gi|147903761|ref|NP_001079367.1| nuclease-sensitive element-binding protein 1 [Xenopus laevis]
 gi|27370848|gb|AAH41191.1| Ybx1 protein [Xenopus laevis]
 gi|76779926|gb|AAI06324.1| Ybx1 protein [Xenopus laevis]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+
Sbjct: 39 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 93


>gi|20806532|ref|NP_035863.1| DNA-binding protein A short isoform [Mus musculus]
 gi|10185725|gb|AAG14419.1|AF248547_1 Y-box protein 3 short isoform [Mus musculus]
 gi|38382730|gb|AAH62377.1| Cold shock domain protein A [Mus musculus]
          Length = 292

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141


>gi|332884046|gb|EGK04326.1| hypothetical protein HMPREF9456_01354 [Dysgonomonas mossii DSM
           22836]
          Length = 151

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 7/51 (13%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           G ++++N DKGYGFI   GSTE     F H     S+ L  + EG +VT++
Sbjct: 86  GRVEYFNQDKGYGFIKHTGSTEK---YFFH----VSSTLVPIEEGNMVTFE 129


>gi|319955388|ref|YP_004166655.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
 gi|319424048|gb|ADV51157.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
          Length = 63

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KG+GFIT EG  +   D F+H S +       + EG +V +D    + N 
Sbjct: 3  KGTVKFFNDAKGFGFITEEGVEK---DHFVHISGLID----EVREGDVVEFDL--QEGNK 53

Query: 64 KYSAENLKLV 73
            +A N+K++
Sbjct: 54 GLNAVNVKVI 63


>gi|147903687|ref|NP_001080918.1| protein lin-28 homolog A [Xenopus laevis]
 gi|82243501|sp|Q8JHC4|LN28A_XENLA RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
 gi|21842301|gb|AAM77750.1|AF521098_1 RNA-binding protein LIN-28A [Xenopus laevis]
 gi|213623350|gb|AAI69625.1| RNA-binding protein LIN-28A [Xenopus laevis]
 gi|213626540|gb|AAI69597.1| RNA-binding protein LIN-28A [Xenopus laevis]
          Length = 195

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGS-TESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF+T    EG+  E+  DVF+H+S +   G  +L EG+ V + +
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPLDVFVHQSKLHMEGFRSLKEGESVEFTF 91


>gi|332812662|ref|XP_001136258.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
           troglodytes]
          Length = 325

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 62  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118


>gi|262201217|ref|YP_003272425.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
 gi|262084564|gb|ACY20532.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
          Length = 155

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          V  G +KWY+ +KG+GF+    + E G+DV++  SA+   G+  L  GQ V +
Sbjct: 19 VPTGKVKWYDAEKGFGFL----AQEDGEDVYVRSSALPD-GVEGLKPGQRVEF 66


>gi|109095654|ref|XP_001118505.1| PREDICTED: DNA-binding protein A-like [Macaca mulatta]
          Length = 407

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 128 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 184


>gi|72008824|ref|XP_785816.1| PREDICTED: similar to Y-Box factor [Strongylocentrotus
          purpuratus]
 gi|115974523|ref|XP_001178393.1| PREDICTED: similar to Y-Box factor [Strongylocentrotus
          purpuratus]
          Length = 326

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          G++KW+N   GYGFI  + + E   DVF+H+SA+          ++ +G++V +D V+
Sbjct: 26 GTVKWFNVKNGYGFINRDDTKE---DVFVHQSAIVRNNPRKYQRSVGDGEVVEFDVVE 80


>gi|224080514|ref|XP_002194901.1| PREDICTED: Y box binding protein 1 [Taeniopygia guttata]
          Length = 324

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 58  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114


>gi|340419|gb|AAA61308.1| Y box binding protein-1 [Homo sapiens]
          Length = 317

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117


>gi|140245|sp|P21573|YBOX1_XENLA RecName: Full=Nuclease-sensitive element-binding protein 1;
          AltName: Full=Y-box transcription factor; AltName:
          Full=Y-box-binding protein 1; Short=YB-1
 gi|214155|gb|AAA49715.1| DNA-binding protein [Xenopus laevis]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+
Sbjct: 39 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 93


>gi|88802865|ref|ZP_01118392.1| cold shock protein [Polaribacter irgensii 23-P]
 gi|88781723|gb|EAR12901.1| cold shock protein [Polaribacter irgensii 23-P]
          Length = 63

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 9/70 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KG+GFIT EG  +   D F+H S +       + EG  V +D    + N 
Sbjct: 3  KGTVKFFNESKGFGFITEEGVDK---DHFVHISGLVD----EIREGDQVEFDL--QEGNK 53

Query: 64 KYSAENLKLV 73
            +A N+K++
Sbjct: 54 GLNAVNVKVI 63


>gi|1353778|gb|AAB01787.1| Y-Box binding protein [Columba livia]
          Length = 287

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 24 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 80


>gi|72170454|ref|XP_792032.1| PREDICTED: similar to ENSANGP00000011455 [Strongylocentrotus
           purpuratus]
 gi|115937083|ref|XP_001186027.1| PREDICTED: similar to ENSANGP00000011455 [Strongylocentrotus
           purpuratus]
          Length = 234

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           ++RG  KW++  K YGF+TP+   +   DVF+H+  +   G  +L   + V Y +
Sbjct: 62  LYRGKCKWFSLAKCYGFLTPD---DGSGDVFVHQRVIKMVGYRSLDTNEEVEYKF 113


>gi|457262|gb|AAA36569.1| nuclease sensitive element binding protein-1 [Homo sapiens]
          Length = 322

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 60  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 116


>gi|259419058|ref|ZP_05742975.1| cold-shock DNA-binding protein family [Silicibacter sp.
          TrichCH4B]
 gi|259345280|gb|EEW57134.1| cold-shock DNA-binding protein family [Silicibacter sp.
          TrichCH4B]
          Length = 180

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 6/54 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG---QLVTY 54
          RG +KW++P KGYGFI      ++G D+ LH + + + G  ++ +G   ++VT+
Sbjct: 12 RGLVKWFDPAKGYGFIV---CPDNGPDILLHVNVLRNFGQSSIADGAGIEVVTH 62



 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G  E   DVFLH   +  +GL ++  G+ +    ++    G+ +
Sbjct: 108 VKWFDKAKGFGFANVFGRDE---DVFLHVEVLRQSGLSDVQSGEALAMRVIEG-KRGRMA 163

Query: 67  AENLKLVPKSSN 78
            + L     SS+
Sbjct: 164 VDVLAWEAASSD 175


>gi|148688938|gb|EDL20885.1| cold shock domain protein A, isoform CRA_a [Mus musculus]
          Length = 405

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 129 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 185


>gi|29477111|gb|AAH50156.1| Y box binding protein 1 [Danio rerio]
          Length = 309

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97


>gi|56754487|gb|AAW25431.1| unknown [Schistosoma japonicum]
          Length = 104

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI  +   ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DANGKYSAE 68
          D   + S E
Sbjct: 84 DKGDEASGE 92


>gi|291411891|ref|XP_002722201.1| PREDICTED: cold shock domain protein A [Oryctolagus cuniculus]
          Length = 376

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 98  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 154


>gi|148688939|gb|EDL20886.1| cold shock domain protein A, isoform CRA_b [Mus musculus]
          Length = 292

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141


>gi|197245601|gb|AAI68507.1| Ybx1 protein [Danio rerio]
          Length = 310

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97


>gi|62089378|dbj|BAD93133.1| CSDA protein variant [Homo sapiens]
          Length = 134

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI    + E   DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 26 GTVKWFNVRNGYGFINRNDTKE---DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 82


>gi|29437175|gb|AAH49977.1| Y box protein 1 [Mus musculus]
          Length = 322

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115


>gi|10185723|gb|AAG14418.1|AF248546_1 Y-box protein 3 long isoform [Mus musculus]
          Length = 361

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141


>gi|92373398|ref|NP_113751.3| nuclease-sensitive element-binding protein 1 [Rattus norvegicus]
 gi|113205059|ref|NP_035862.2| nuclease-sensitive element-binding protein 1 [Mus musculus]
 gi|148230224|ref|NP_001091240.1| Y box binding protein 1 [Xenopus laevis]
 gi|51704186|sp|P62961|YBOX1_RAT RecName: Full=Nuclease-sensitive element-binding protein 1;
           AltName: Full=CCAAT-binding transcription factor I
           subunit A; Short=CBF-A; AltName: Full=DNA-binding
           protein B; Short=DBPB; AltName: Full=Enhancer factor I
           subunit A; Short=EFI-A; AltName: Full=Y-box
           transcription factor; AltName: Full=Y-box-binding
           protein 1; Short=YB-1
 gi|51704189|sp|P62960|YBOX1_MOUSE RecName: Full=Nuclease-sensitive element-binding protein 1;
           AltName: Full=CCAAT-binding transcription factor I
           subunit A; Short=CBF-A; AltName: Full=DNA-binding
           protein B; Short=DBPB; AltName: Full=Enhancer factor I
           subunit A; Short=EFI-A; AltName: Full=Y-box
           transcription factor; AltName: Full=Y-box-binding
           protein 1; Short=YB-1
 gi|202435|gb|AAA40577.1| Y-box binding protein 1/DNA binding protein B [Mus musculus]
 gi|220895|dbj|BAA02569.1| DNA binding protein B [Rattus sp.]
 gi|15488612|gb|AAH13450.1| Y box protein 1 [Mus musculus]
 gi|15488999|gb|AAH13620.1| Y box protein 1 [Mus musculus]
 gi|20987294|gb|AAH29747.1| Y box protein 1 [Mus musculus]
 gi|21594391|gb|AAH31472.1| Y box protein 1 [Mus musculus]
 gi|38197295|gb|AAH61634.1| Y box protein 1 [Mus musculus]
 gi|47938951|gb|AAH72486.1| Y box binding protein 1 [Rattus norvegicus]
 gi|68533639|gb|AAH98672.1| Y box binding protein 1 [Rattus norvegicus]
 gi|74178193|dbj|BAE29883.1| unnamed protein product [Mus musculus]
 gi|76779878|gb|AAI06144.1| Y box protein 1 [Mus musculus]
 gi|120577450|gb|AAI30161.1| LOC100037035 protein [Xenopus laevis]
 gi|123227480|emb|CAM27834.1| Y box protein 1 [Mus musculus]
 gi|123228022|emb|CAM22937.1| Y box protein 1 [Mus musculus]
 gi|149035444|gb|EDL90125.1| rCG50488, isoform CRA_b [Rattus norvegicus]
          Length = 322

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115


>gi|322368358|ref|ZP_08042927.1| cold shock protein [Haladaptatus paucihalophilus DX253]
 gi|320552374|gb|EFW94019.1| cold shock protein [Haladaptatus paucihalophilus DX253]
          Length = 64

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++ ++N   GYGFI  E S E   DVF H   V      +L EGQ V +D  Q D
Sbjct: 3  KGTVDFFNDTGGYGFIDTEDSDE---DVFFHMEDVGGP---DLEEGQEVEFDIEQAD 53


>gi|300115369|ref|YP_003761944.1| cold-shock DNA-binding domain-containing protein [Nitrosococcus
          watsonii C-113]
 gi|299541306|gb|ADJ29623.1| cold-shock DNA-binding domain protein [Nitrosococcus watsonii
          C-113]
          Length = 229

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 7/78 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G I  +N +KGYGFI+P      GD VF H  A  + G      G  VT+  +  D
Sbjct: 1  MRMKGEIASWNDEKGYGFISP---MRGGDRVFAHIKAFVNRGR-RPAVGDAVTFS-MSTD 55

Query: 61 ANGKYSAENLKL--VPKS 76
          A G++ A+   +  VPK+
Sbjct: 56 ARGRHCAKEAIIAGVPKT 73


>gi|194207608|ref|XP_001916443.1| PREDICTED: similar to rCG50488 [Equus caballus]
          Length = 364

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 101 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 157


>gi|61367907|gb|AAX43065.1| nuclease sensitive element binding protein 1 [synthetic construct]
 gi|61369330|gb|AAX43318.1| nuclease sensitive element binding protein 1 [synthetic construct]
          Length = 325

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117


>gi|290543326|ref|NP_001166512.1| Y box binding protein 1 [Cavia porcellus]
 gi|194241598|gb|ACF35054.1| YB1 [Cavia porcellus]
          Length = 324

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117


>gi|220921873|ref|YP_002497174.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium nodulans ORS 2060]
 gi|219946479|gb|ACL56871.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
          ORS 2060]
          Length = 189

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G IKW++  KG+GFI P+       DV LH + +   G  + +EG  V  + VQ 
Sbjct: 26 GRIKWFDVAKGFGFIVPD---NGAPDVLLHVTCLRRDGHQSASEGARVVVEAVQR 77


>gi|148698506|gb|EDL30453.1| mCG4206 [Mus musculus]
          Length = 268

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 5  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 61


>gi|148225376|ref|NP_001087255.1| nuclease-sensitive element-binding protein 1 [Ovis aries]
 gi|140326474|gb|ABO86713.1| nuclease sensitive element binding protein 1 [Ovis aries]
          Length = 288

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 25 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGE 81


>gi|203398|gb|AAA40906.1| putative [Rattus norvegicus]
          Length = 322

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115


>gi|950340|gb|AAA79243.1| DNA-binding protein A [Homo sapiens]
          Length = 342

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 93  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149


>gi|3121921|sp|Q44078|CSPA_AERHY RecName: Full=Major cold-shock protein
 gi|1402731|gb|AAC80230.1| major cold-shock protein [Aeromonas hydrophila]
          Length = 46

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +KG+GFI+P   T+   DVF+H SA+ + G   L EGQ V +   Q
Sbjct: 1  EKGFGFISP---TDGSKDVFVHFSAIQTPGFKTLDEGQRVEFTIEQ 43


>gi|323136356|ref|ZP_08071438.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
           49242]
 gi|322398430|gb|EFY00950.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
           49242]
          Length = 191

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T    TE   D+FLH   V   G+  L  G  V   Y  +   G  +
Sbjct: 122 VKWFNRVKGFGFLTRGEGTE---DIFLHMETVRRYGMTELKPGDSVLVRY-GDGPKGLMA 177

Query: 67  AENLKLVPKS 76
           AE   L  KS
Sbjct: 178 AEVRPLEAKS 187



 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G IKW++  KGYGF+ P+   +   D+ LH + +  +GL    EG  V  +  Q  A G
Sbjct: 28 GRIKWFDVAKGYGFVVPD---DGSPDILLHVTILRRSGLQTAFEGARVVCE-AQKRAKG 82


>gi|203999|gb|AAA41108.1| enhancer factor-1-alpha [Rattus norvegicus]
          Length = 322

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115


>gi|14250672|gb|AAH08801.1| Cold shock domain protein A [Homo sapiens]
 gi|18314511|gb|AAH21926.1| Cold shock domain protein A [Homo sapiens]
 gi|123984533|gb|ABM83612.1| cold shock domain protein A [synthetic construct]
 gi|123998509|gb|ABM86856.1| cold shock domain protein A [synthetic construct]
 gi|208966070|dbj|BAG73049.1| cold shock domain protein A [synthetic construct]
          Length = 372

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 93  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149


>gi|130488167|ref|NP_001076254.1| nuclease-sensitive element-binding protein 1 [Oryctolagus
           cuniculus]
 gi|75069491|sp|Q28618|YBOX1_RABIT RecName: Full=Nuclease-sensitive element-binding protein 1;
           AltName: Full=CCAAT-binding transcription factor I
           subunit A; Short=CBF-A; AltName: Full=Enhancer factor I
           subunit A; Short=EFI-A; AltName: Full=Y-box
           transcription factor; AltName: Full=Y-box-binding
           protein 1; Short=YB-1; AltName: Full=p50
 gi|608518|gb|AAA66069.1| p50 [Oryctolagus cuniculus]
          Length = 324

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117


>gi|6166111|sp|Q62764|DBPA_RAT RecName: Full=DNA-binding protein A; AltName: Full=Cold shock
           domain-containing protein A; AltName: Full=Muscle Y-box
           protein YB2; AltName: Full=RYB-A; AltName:
           Full=Y-box-binding protein A
 gi|1101884|gb|AAB60520.1| YB2 [Rattus norvegicus]
 gi|1589174|prf||2210343A nicotinic acetylcholine receptor repressor
          Length = 361

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141


>gi|149478389|ref|XP_001515006.1| PREDICTED: similar to AMP deaminase 1 (Myoadenylate deaminase) (AMP
           deaminase isoform M) [Ornithorhynchus anatinus]
          Length = 316

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 53  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 109


>gi|47059495|ref|NP_620817.2| DNA-binding protein A long isoform [Mus musculus]
 gi|82524639|ref|NP_114185.2| DNA-binding protein A [Rattus norvegicus]
 gi|61212920|sp|Q9JKB3|DBPA_MOUSE RecName: Full=DNA-binding protein A; AltName: Full=Cold shock
           domain-containing protein A; AltName: Full=Y-box protein
           3
 gi|29387050|gb|AAH48242.1| Cold shock domain protein A [Mus musculus]
 gi|76779326|gb|AAI05779.1| Cold shock domain protein A [Rattus norvegicus]
          Length = 361

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141


>gi|27807361|ref|NP_777240.1| nuclease-sensitive element-binding protein 1 [Bos taurus]
 gi|34098946|ref|NP_004550.2| nuclease-sensitive element-binding protein 1 [Homo sapiens]
 gi|332248504|ref|XP_003273402.1| PREDICTED: nuclease-sensitive element-binding protein 1 [Nomascus
           leucogenys]
 gi|332808655|ref|XP_525693.3| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
           troglodytes]
 gi|54040030|sp|P67808|YBOX1_BOVIN RecName: Full=Nuclease-sensitive element-binding protein 1;
           AltName: Full=CCAAT-binding transcription factor I
           subunit A; Short=CBF-A; AltName: Full=DNA-binding
           protein B; Short=DBPB; AltName: Full=Enhancer factor I
           subunit A; Short=EFI-A; AltName: Full=Y-box
           transcription factor; AltName: Full=Y-box-binding
           protein 1; Short=YB-1
 gi|54040031|sp|P67809|YBOX1_HUMAN RecName: Full=Nuclease-sensitive element-binding protein 1;
           AltName: Full=CCAAT-binding transcription factor I
           subunit A; Short=CBF-A; AltName: Full=DNA-binding
           protein B; Short=DBPB; AltName: Full=Enhancer factor I
           subunit A; Short=EFI-A; AltName: Full=Y-box
           transcription factor; AltName: Full=Y-box-binding
           protein 1; Short=YB-1
 gi|162983|gb|AAA30497.1| transcription factor EF1(A) [Bos taurus]
 gi|454152|gb|AAA20871.1| similar to dbpB protein [Homo sapiens]
 gi|12803207|gb|AAH02411.1| Y box binding protein 1 [Homo sapiens]
 gi|14714588|gb|AAH10430.1| Y box binding protein 1 [Homo sapiens]
 gi|15929560|gb|AAH15208.1| Y box binding protein 1 [Homo sapiens]
 gi|23468206|gb|AAH38384.1| Y box binding protein 1 [Homo sapiens]
 gi|41350935|gb|AAH65571.1| Y box binding protein 1 [Homo sapiens]
 gi|47125298|gb|AAH70084.1| Y box binding protein 1 [Homo sapiens]
 gi|47940506|gb|AAH71708.1| Y box binding protein 1 [Homo sapiens]
 gi|58477789|gb|AAH90038.1| Y box binding protein 1 [Homo sapiens]
 gi|61359169|gb|AAX41678.1| nuclease sensitive element binding protein 1 [synthetic construct]
 gi|68534659|gb|AAH98435.1| Y box binding protein 1 [Homo sapiens]
 gi|76779237|gb|AAI06046.1| Y box binding protein 1 [Homo sapiens]
 gi|86821283|gb|AAI05364.1| Y box binding protein 1 [Bos taurus]
 gi|119627554|gb|EAX07149.1| Y box binding protein 1, isoform CRA_b [Homo sapiens]
 gi|123981412|gb|ABM82535.1| Y box binding protein 1 [synthetic construct]
 gi|123996253|gb|ABM85728.1| Y box binding protein 1 [synthetic construct]
 gi|168277900|dbj|BAG10928.1| nuclease sensitive element-binding protein 1 [synthetic construct]
 gi|296488844|gb|DAA30957.1| nuclease-sensitive element-binding protein 1 [Bos taurus]
          Length = 324

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117


>gi|77736623|ref|NP_001029990.1| protein lin-28 homolog B [Gallus gallus]
 gi|116248186|sp|Q45KJ4|LN28B_CHICK RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
 gi|71724932|gb|AAZ38896.1| LIN28B [Gallus gallus]
          Length = 250

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  ES  DVF+H+S +   G  +L EG+ V + Y
Sbjct: 32 GHCKWFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTY 87


>gi|465508|sp|Q06066|YBOX1_CHICK RecName: Full=Nuclease-sensitive element-binding protein 1;
           AltName: Full=Y-box transcription factor; AltName:
           Full=Y-box-binding protein 1; Short=YB-1
 gi|289797|gb|AAA02573.1| YB-1 protein [Gallus gallus]
          Length = 321

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 58  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114


>gi|194211706|ref|XP_001495854.2| PREDICTED: similar to Y-box protein ZONAB-B [Equus caballus]
          Length = 332

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 55  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 111


>gi|145284604|gb|ABP52049.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 27

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KG+GFI PE     GDDVF+H
Sbjct: 1  GQVKWFNNAKGFGFICPE---SGGDDVFVH 27


>gi|145298105|ref|YP_001140946.1| cold-shock protein, DNA-binding [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142850877|gb|ABO89198.1| cold-shock protein, DNA-binding [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 219

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 5/57 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITP--EGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTY 54
          M ++G I  +N  +G+GFITP  EG  + G ++F+H SA+ S G L N+  G+ V+Y
Sbjct: 1  MRYQGRIASWNEARGFGFITPEQEGGEQQGSELFVHISALQSDGSLPNV--GERVSY 55


>gi|187607756|ref|NP_001119929.1| nuclease-sensitive element-binding protein 1 isoform 1 [Danio
          rerio]
 gi|118763928|gb|AAI28886.1| Y box binding protein 1 [Danio rerio]
 gi|169159049|emb|CAQ15227.1| Y box binding protein 1 [Danio rerio]
          Length = 309

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97


>gi|181486|gb|AAA35750.1| DNA-binding protein B [Homo sapiens]
          Length = 364

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 101 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 157


>gi|18859137|ref|NP_571695.1| nuclease-sensitive element-binding protein 1 isoform 2 [Danio
          rerio]
 gi|3695368|gb|AAC62774.1| zfY1 [Danio rerio]
 gi|169642049|gb|AAI60650.1| Y box binding protein 1 [Danio rerio]
          Length = 310

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97


>gi|328543603|ref|YP_004303712.1| Cold shock-like protein cspG [polymorphum gilvum SL003B-26A1]
 gi|326413347|gb|ADZ70410.1| Cold shock-like protein cspG [Polymorphum gilvum SL003B-26A1]
          Length = 193

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           + ++KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ V   +      G
Sbjct: 119 KATVKWFNRVKGFGFLT---QGEGTEDIFIHMETLRRFGITELRPGQDVLVRF-GTGPKG 174

Query: 64  KYSAE 68
           + +AE
Sbjct: 175 RMAAE 179



 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G+IKW++  KGYGFI P+       D+ LH + +   G     EG  V  + +
Sbjct: 28 GTIKWFDIAKGYGFIVPDNGLP---DILLHVTCLRRDGFQTAYEGARVVCEVL 77


>gi|149035443|gb|EDL90124.1| rCG50488, isoform CRA_a [Rattus norvegicus]
          Length = 305

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 42 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 98


>gi|7385223|gb|AAF61741.1| RNA binding protein MSY4 [Mus musculus]
          Length = 361

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141


>gi|311256155|ref|XP_003126523.1| PREDICTED: DNA-binding protein A-like [Sus scrofa]
          Length = 380

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 102 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 158


>gi|297691167|ref|XP_002822965.1| PREDICTED: DNA-binding protein A-like [Pongo abelii]
          Length = 371

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 92  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 148


>gi|148235020|ref|NP_001091543.1| DNA-binding protein A [Bos taurus]
 gi|146186540|gb|AAI40645.1| CSDA protein [Bos taurus]
 gi|296487252|gb|DAA29365.1| cold shock domain protein A [Bos taurus]
          Length = 376

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 99  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 155


>gi|332838569|ref|XP_003313542.1| PREDICTED: DNA-binding protein A isoform 1 [Pan troglodytes]
          Length = 305

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 95  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151


>gi|332838567|ref|XP_520744.3| PREDICTED: DNA-binding protein A isoform 2 [Pan troglodytes]
          Length = 374

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 95  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151


>gi|300790296|ref|YP_003770587.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
 gi|299799810|gb|ADJ50185.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
          Length = 128

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 5/50 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G +KWY+ +KG+GF+T +G    G DV++ ++A+   G+  L  GQ + +
Sbjct: 4  GKVKWYDAEKGFGFVTQDG----GADVYIRKAALPQ-GVEGLKAGQRLEF 48


>gi|224586882|ref|NP_003642.3| DNA-binding protein A isoform a [Homo sapiens]
 gi|97536050|sp|P16989|DBPA_HUMAN RecName: Full=DNA-binding protein A; AltName: Full=Cold shock
           domain-containing protein A; AltName: Full=Single-strand
           DNA-binding protein NF-GMB
 gi|1167838|emb|CAA64631.1| DNA-binding protein [Homo sapiens]
 gi|15026972|emb|CAA51261.1| cold shock domain protein A [Homo sapiens]
 gi|15990406|gb|AAH15564.1| Cold shock domain protein A [Homo sapiens]
 gi|119616607|gb|EAW96201.1| cold shock domain protein A, isoform CRA_a [Homo sapiens]
 gi|119616608|gb|EAW96202.1| cold shock domain protein A, isoform CRA_a [Homo sapiens]
 gi|189054724|dbj|BAG37363.1| unnamed protein product [Homo sapiens]
          Length = 372

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 93  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149


>gi|224586884|ref|NP_001138898.1| DNA-binding protein A isoform b [Homo sapiens]
 gi|16198465|gb|AAH15913.1| CSDA protein [Homo sapiens]
 gi|119616609|gb|EAW96203.1| cold shock domain protein A, isoform CRA_b [Homo sapiens]
 gi|119616610|gb|EAW96204.1| cold shock domain protein A, isoform CRA_b [Homo sapiens]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 93  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149


>gi|2745892|gb|AAB94768.1| Y box transcription factor [Mus musculus]
          Length = 299

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 36 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 92


>gi|199821|gb|AAA63390.1| Y box transcription factor [Mus musculus]
          Length = 322

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115


>gi|296207663|ref|XP_002750741.1| PREDICTED: nuclease-sensitive element-binding protein 1-like
           [Callithrix jacchus]
          Length = 323

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 60  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 116


>gi|254498195|ref|ZP_05110944.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
 gi|254352603|gb|EET11389.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
          Length = 73

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G +KW+  +KG+GFI  EG      D F+H S + + G   L +G  V++
Sbjct: 8  QGIVKWFQKEKGFGFIQCEGQ-----DYFVHFSGIIAEGYKTLPDGAHVSF 53


>gi|54022606|ref|YP_116848.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54014114|dbj|BAD55484.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 138

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF+    S + G+DV++ RS+    G+  L  GQ V +      A G+
Sbjct: 4  GRVKWYDVEKGFGFL----SQDEGEDVYV-RSSALPEGVEGLKPGQRVEFGM----AAGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|988283|gb|AAA75476.1| mYB-1b [Mus musculus]
          Length = 322

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115


>gi|302392639|ref|YP_003828459.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
 gi|302204716|gb|ADL13394.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
          Length = 66

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 6/43 (13%)

Query: 5  GSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNL 46
          G++KW++ +KGYGFI  PE      DDVF+H SA+   G  +L
Sbjct: 4  GTVKWFDSNKGYGFIERPEE-----DDVFVHFSAIQDDGFKDL 41


>gi|56800108|emb|CAI35156.1| Y box protein 2 [Mus musculus]
          Length = 282

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 20 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 76


>gi|163852424|ref|YP_001640467.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|163664029|gb|ABY31396.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
          Length = 202

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G IKW++  KG+GFI P+   +   DV LH + +   G    +EG  +  + VQ 
Sbjct: 39 GRIKWFDVSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR 90



 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  +G+GF++    T    D+F+H   +   G+  L  G+ V   Y   D 
Sbjct: 128 LERAVVKWFNRLRGFGFLSRGDDT---PDIFVHMETLRRYGIAELKPGEEVMVRY--GDG 182

Query: 62  NGKYSAENLKLV 73
           +    A  ++LV
Sbjct: 183 SKGAMAAEVRLV 194


>gi|181484|gb|AAA35749.1| DNA-binding protein A [Homo sapiens]
          Length = 412

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 163 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 219


>gi|90424288|ref|YP_532658.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
           palustris BisB18]
 gi|90106302|gb|ABD88339.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
           BisB18]
          Length = 220

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G IKW++  KGYGFI P+  +    DV LH + +   G     EG  +  + VQ 
Sbjct: 56  GVIKWFDASKGYGFIVPDNGSP---DVLLHVTVLRRDGYQTAYEGARIICECVQR 107



 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V   +
Sbjct: 145 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRF 196


>gi|296210997|ref|XP_002752196.1| PREDICTED: hypothetical protein LOC100396927 [Callithrix jacchus]
          Length = 302

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 92  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 148


>gi|254511315|ref|ZP_05123382.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535026|gb|EEE38014.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 168

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    GS+E   DVFLH   +  +GL +L  G+ +    + +   G+ +
Sbjct: 101 VKWFDKGKGFGFANVFGSSE---DVFLHIEVLRRSGLADLQPGEALAMRVI-DGKRGRMA 156

Query: 67  AENL 70
           A+ L
Sbjct: 157 AQVL 160



 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
          RG +KW++P KGYGF+    S + G D+ LH + + + G  ++ +G
Sbjct: 5  RGHVKWFDPAKGYGFVV---SDDGGPDILLHVNVLRNFGQSSVADG 47


>gi|194332739|ref|NP_001123667.1| Y box binding protein 2 [Xenopus (Silurana) tropicalis]
 gi|187469386|gb|AAI66950.1| LOC100170415 protein [Xenopus (Silurana) tropicalis]
          Length = 337

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 7/61 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 43  QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 99

Query: 60  D 60
           +
Sbjct: 100 E 100


>gi|9653686|gb|AAB46889.2| TSH receptor suppressor element-binding protein-1 [Rattus sp.]
          Length = 322

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115


>gi|291405168|ref|XP_002719041.1| PREDICTED: Y box binding protein 2 [Oryctolagus cuniculus]
          Length = 275

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 13 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 69


>gi|83594086|ref|YP_427838.1| cold-shock DNA-binding protein family protein [Rhodospirillum
          rubrum ATCC 11170]
 gi|83577000|gb|ABC23551.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
          11170]
          Length = 70

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 3/34 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G++KW+N  KG+GFI P+   + G D F+H SAV
Sbjct: 4  GTVKWFNVQKGFGFIAPD---DGGSDAFVHISAV 34


>gi|197284614|ref|YP_002150486.1| cold shock protein [Proteus mirabilis HI4320]
 gi|194682101|emb|CAR41685.1| putative cold shock protein [Proteus mirabilis HI4320]
          Length = 71

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ +KGYG I  +   +   D+++++ A+A+     LTEGQ V +  ++  A
Sbjct: 5  LRMGRVKWFDNNKGYGLIVAKDLEQ---DIYVNKKAIANTKNKALTEGQDVEFSVIKTAA 61


>gi|83942584|ref|ZP_00955045.1| cold shock DNA-binding domain protein [Sulfitobacter sp. EE-36]
 gi|83953825|ref|ZP_00962546.1| cold shock DNA-binding domain protein [Sulfitobacter sp. NAS-14.1]
 gi|83841770|gb|EAP80939.1| cold shock DNA-binding domain protein [Sulfitobacter sp. NAS-14.1]
 gi|83846677|gb|EAP84553.1| cold shock DNA-binding domain protein [Sulfitobacter sp. EE-36]
          Length = 169

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G +   DD+FLH   +  +GL +L  G+ +    + N   G+ +
Sbjct: 95  VKWFDKSKGFGFANVFGKS---DDIFLHIEVLRQSGLSDLQPGEALALRVI-NGERGQMA 150

Query: 67  AE 68
           AE
Sbjct: 151 AE 152



 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 11/49 (22%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLH--------RSAVASAGLFNLT 47
          +KW++P KG+GF+    S   G D+ LH        +S+VA     +LT
Sbjct: 2  VKWFDPAKGFGFVV---SDAGGPDILLHVNVLRNYGQSSVADGARIDLT 47


>gi|329925038|ref|ZP_08279982.1| cold-shock DNA-binding domain protein [Paenibacillus sp. HGF5]
 gi|328940157|gb|EGG36489.1| cold-shock DNA-binding domain protein [Paenibacillus sp. HGF5]
          Length = 80

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+++ +N  KGYGF+  +G   +G+ +F H +     GL  L+ G+ ++++ +  DA G+
Sbjct: 12 GTVRKFNDPKGYGFVDVDG---TGERLFFHINESIEPGLGWLSYGERISFE-IGEDAKGR 67

Query: 65 YSAENLKLV 73
            A  +KL+
Sbjct: 68 NHAVKIKLI 76


>gi|148680545|gb|EDL12492.1| Y box protein 2 [Mus musculus]
          Length = 268

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 6  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 62


>gi|170738730|ref|YP_001767385.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium sp. 4-46]
 gi|168193004|gb|ACA14951.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
          Length = 204

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G IKW++  KG+GFI P+       DV LH + +   G  + +EG  +  + VQ 
Sbjct: 41 GRIKWFDVAKGFGFIVPD---SGAPDVLLHVTCLRRDGHQSASEGARIVVEAVQR 92


>gi|22901740|gb|AAN10049.1| Y-box protein Ct-p40 [Chironomus tentans]
          Length = 264

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57
          G++KW+N   GYGFI      ++  D+F+H+SA+        + ++ +G++V +D V
Sbjct: 32 GTVKWFNVKSGYGFIN---RNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVV 85


>gi|62389710|ref|YP_225112.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
 gi|41325045|emb|CAF19526.1| Cold shock protein [Corynebacterium glutamicum ATCC 13032]
          Length = 127

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 5/52 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G++KWY+ ++G+GF+    S   G+D F+ +  V   G+  L +GQ + +D+
Sbjct: 4  GTVKWYDAERGFGFV----SNPGGEDCFVGKQ-VLPKGVTELHKGQRIDFDF 50


>gi|83592002|ref|YP_425754.1| cold-shock DNA-binding protein family protein [Rhodospirillum
          rubrum ATCC 11170]
 gi|83574916|gb|ABC21467.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
          11170]
          Length = 68

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G+I W++   GYGFI P+   + G D+ +   A+  +GL +L +GQ V Y
Sbjct: 4  GTITWFDTINGYGFIRPD---DGGGDIAVDMPALDRSGLRSLRDGQRVAY 50


>gi|2073109|dbj|BAA19849.1| Y box protein 1 [Carassius auratus]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 42 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 98


>gi|145219984|ref|YP_001130693.1| cold-shock DNA-binding protein family protein [Prosthecochloris
          vibrioformis DSM 265]
 gi|145206148|gb|ABP37191.1| cold-shock DNA-binding protein family [Chlorobium phaeovibrioides
          DSM 265]
          Length = 85

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 5/44 (11%)

Query: 4  RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNL 46
          +  +KW++  KGYGFI  PEG    G+D+F+H SA+ S   F +
Sbjct: 3  KSKVKWFDGKKGYGFILHPEG----GEDIFVHFSAINSEQPFKV 42


>gi|149610695|ref|XP_001517390.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 223

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 62  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118


>gi|145284606|gb|ABP52050.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 27

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KG+GFI PE     GDDVF+H
Sbjct: 1  GRVKWFNNAKGFGFICPE---SGGDDVFVH 27


>gi|242008099|ref|XP_002424850.1| Nuclease sensitive element-binding protein, putative [Pediculus
          humanus corporis]
 gi|212508400|gb|EEB12112.1| Nuclease sensitive element-binding protein, putative [Pediculus
          humanus corporis]
          Length = 288

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
          G++KW+N   GYGFI  + + E   DVF+H++A+        + ++ +G++V +D V
Sbjct: 27 GTVKWFNVKSGYGFINRDDTKE---DVFVHQTAIVKNNPKKFVRSVGDGEVVEFDVV 80


>gi|109113073|ref|XP_001107460.1| PREDICTED: y-box-binding protein 2-like [Macaca mulatta]
          Length = 359

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 97  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153


>gi|311268286|ref|XP_003131986.1| PREDICTED: y-box-binding protein 2-like [Sus scrofa]
          Length = 394

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 98  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154


>gi|163742804|ref|ZP_02150189.1| cold shock DNA-binding domain protein [Phaeobacter gallaeciensis
          2.10]
 gi|161384059|gb|EDQ08443.1| cold shock DNA-binding domain protein [Phaeobacter gallaeciensis
          2.10]
          Length = 164

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 10/75 (13%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG---QLVTYDYVQNDANG 63
          +KW++P KG+GF+    S E G D+ LH + + + G  ++ +G   +LVT+        G
Sbjct: 1  MKWFDPTKGFGFVV---SDEGGPDILLHVNVLRNFGQSSIADGAEVELVTH----RTERG 53

Query: 64 KYSAENLKLVPKSSN 78
            + E L + P + +
Sbjct: 54 VQAVEVLSITPPARD 68



 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G  E   DVFLH   +  +GL  L  G+ +    + +   G+ +
Sbjct: 94  VKWFDKGKGFGFANVFGRDE---DVFLHVEVLRQSGLSELQPGEALGMRVI-DGKRGRMA 149

Query: 67  AENL 70
            E L
Sbjct: 150 VEVL 153


>gi|325297104|ref|NP_001191560.1| Y-box factor homolog [Aplysia californica]
 gi|1175568|sp|P41824|YBOXH_APLCA RecName: Full=Y-box factor homolog; AltName: Full=APY1
 gi|409419|gb|AAA60373.1| Y-Box factor [Aplysia californica]
          Length = 253

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI  + + E   DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 35 GTVKWFNVKSGYGFINRDDTKE---DVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGE 91


>gi|254503970|ref|ZP_05116121.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222440041|gb|EEE46720.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 193

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ V   +      G+ 
Sbjct: 121 TVKWFNRVKGFGFLT---QGEGTEDIFIHMETLRRYGITELRPGQEVLVRF-GTGPKGRM 176

Query: 66  SAE 68
           +AE
Sbjct: 177 AAE 179



 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G+IKW++  KGYGFI P    +SG+ D+ LH + +   G     EG  V  + +
Sbjct: 28 GTIKWFDVGKGYGFIVP----DSGETDILLHVTCLRRDGFQTAYEGARVVCEVL 77


>gi|71679965|gb|AAI00455.1| Ybx2 protein [Mus musculus]
          Length = 171

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+
Sbjct: 97  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVE 151


>gi|317123896|ref|YP_004098008.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
 gi|315587984|gb|ADU47281.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
          Length = 131

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +++++ DKG+GFI    + + G DVFLH +A+   G+  L +G  V +  V+    G+
Sbjct: 4  GKVRFFDADKGFGFI----AEDDGADVFLHANALPE-GVTTLKKGTRVEFGIVE----GR 54

Query: 65 YSAENLKL 72
            A+ L++
Sbjct: 55 KGAQALQV 62


>gi|315499811|ref|YP_004088614.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
 gi|315417823|gb|ADU14463.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
          Length = 184

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAG 42
          G +KW++  KGYGFI P+    +G  DV LH SA+   G
Sbjct: 18 GRVKWFDAGKGYGFIVPQSPELTGMRDVLLHVSALRDMG 56



 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           +IKW+N  KGYGF+   G+  +  D+F+H   +   GL ++ +G  +   +
Sbjct: 119 TIKWFNRTKGYGFVV-RGNDPT--DIFIHIETLRRFGLEDIQQGDTLMVRF 166


>gi|124267217|ref|YP_001021221.1| cold shock DNA-binding domain-containing protein [Methylibium
          petroleiphilum PM1]
 gi|124259992|gb|ABM94986.1| cold-shock DNA-binding domain [Methylibium petroleiphilum PM1]
          Length = 203

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K +N ++G+GFI P      G D+F+H  A  S G    T GQ VT++ V+   NGK
Sbjct: 5  GKLKSWNDERGFGFIDP---VHGGQDIFVHIKAFPS-GTGRPTVGQAVTFE-VELGPNGK 59

Query: 65 YSAENLK 71
            A +++
Sbjct: 60 KRARSVQ 66


>gi|218531182|ref|YP_002421998.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|254562173|ref|YP_003069268.1| tandem cold-shock DNA-binding domain-containing protein
          [Methylobacterium extorquens DM4]
 gi|218523485|gb|ACK84070.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|254269451|emb|CAX25417.1| putative tandem cold-shock DNA-binding domain protein
          [Methylobacterium extorquens DM4]
          Length = 181

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G IKW++  KG+GFI P+   +   DV LH + +   G    +EG  +  + VQ 
Sbjct: 18 GRIKWFDVSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR 69



 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  +G+GF++    T    D+F+H   +   G+  L  G+ V   Y   D 
Sbjct: 107 LERAVVKWFNRLRGFGFLSRGDDT---PDIFVHMETLRRYGIAELKPGEEVMVRY--GDG 161

Query: 62  NGKYSAENLKLV 73
           +    A  ++LV
Sbjct: 162 SKGAMAAEVRLV 173


>gi|62656341|ref|XP_220618.3| PREDICTED: Y box protein 2 [Rattus norvegicus]
 gi|109491139|ref|XP_001079683.1| PREDICTED: Y box binding protein 2 [Rattus norvegicus]
          Length = 359

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 97  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153


>gi|57086603|ref|XP_546585.1| PREDICTED: similar to Y-box binding protein-2 (Germ cell specific
           Y-box binding protein) (FRGY2 homolog) [Canis
           familiaris]
          Length = 361

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 98  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154


>gi|117956377|ref|NP_058571.2| Y-box-binding protein 2 [Mus musculus]
 gi|56800107|emb|CAI35155.1| Y box protein 2 [Mus musculus]
 gi|187954905|gb|AAI41113.1| Y box protein 2 [Mus musculus]
          Length = 359

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 97  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153


>gi|327440390|dbj|BAK16755.1| cold shock protein [Solibacillus silvestris StLB046]
          Length = 77

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          RG  K ++ ++G+G+I+ EG      DV++H S++   G  +LT G+ V++D  +N
Sbjct: 6  RGVCKIFDDEEGWGWISIEGEA----DVWVHFSSIQMDGFKSLTIGEAVSFDLEEN 57


>gi|189502046|ref|YP_001957763.1| hypothetical protein Aasi_0637 [Candidatus Amoebophilus asiaticus
          5a2]
 gi|189497487|gb|ACE06034.1| hypothetical protein Aasi_0637 [Candidatus Amoebophilus asiaticus
          5a2]
          Length = 67

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDANG 63
          G+IK++N  KGYGFIT   S     D F+H +A+       ++ EG  VT++ V+     
Sbjct: 4  GTIKFFNESKGYGFITDSAS----QDHFVHVTALHDEVKELDMKEGHKVTFETVETSRGS 59

Query: 64 KYSAENLKL 72
            +A N++L
Sbjct: 60 --NATNVRL 66


>gi|73976711|ref|XP_848660.1| PREDICTED: similar to nuclease sensitive element binding protein 1
           [Canis familiaris]
          Length = 448

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 170 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 226


>gi|291394002|ref|XP_002713355.1| PREDICTED: DNA-binding protein B-like [Oryctolagus cuniculus]
          Length = 320

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 57  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLGSVGDGETVEFDVVEGE 113


>gi|161522615|ref|YP_001585544.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          multivorans ATCC 17616]
 gi|160346168|gb|ABX19252.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
          ATCC 17616]
          Length = 193

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW++ DKG+GFI      ES  D F H S V  A      EG +V +D   N    
Sbjct: 2  RGTVKWFSKDKGHGFI----YGESAVDYFFHVSDVVGAD--APREGDIVEFDATSNKRGP 55

Query: 64 KYSAENLKLVPK 75
          +  A  +++V +
Sbjct: 56 R--AATVRIVER 65


>gi|149052644|gb|EDM04461.1| rCG63497 [Rattus norvegicus]
          Length = 322

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI    S ++ +DVF+H++A+        L ++ +G+ V ++ V+ +
Sbjct: 59  GTVKWFNVRNGYGFIN---SNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFEVVEGE 115


>gi|91977002|ref|YP_569661.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
           BisB5]
 gi|91683458|gb|ABE39760.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
           BisB5]
          Length = 219

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  + VQ 
Sbjct: 55  GVIKWFDASKGYGFIVPDNGAA---DVLLHVTVLRRDGYQTAYEGARIVVECVQR 106



 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V   +
Sbjct: 144 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRF 195


>gi|302530552|ref|ZP_07282894.1| cold-shock DNA-binding domain-containing protein [Streptomyces
          sp. AA4]
 gi|302439447|gb|EFL11263.1| cold-shock DNA-binding domain-containing protein [Streptomyces
          sp. AA4]
          Length = 139

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          V  G +KWY+ +KG+GF+T +G    G DV++ ++A+   G+  L  GQ + +
Sbjct: 12 VPTGKVKWYDAEKGFGFVTQDG----GADVYIRKAALPH-GVEGLKAGQRLEF 59


>gi|147904000|ref|NP_001091595.1| Y-box-binding protein 2 [Bos taurus]
 gi|146186879|gb|AAI40615.1| YBX2 protein [Bos taurus]
 gi|296476769|gb|DAA18884.1| Y box binding protein 2 [Bos taurus]
          Length = 360

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 98  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154


>gi|196007122|ref|XP_002113427.1| hypothetical protein TRIADDRAFT_64023 [Trichoplax adhaerens]
 gi|190583831|gb|EDV23901.1| hypothetical protein TRIADDRAFT_64023 [Trichoplax adhaerens]
          Length = 279

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 27/36 (75%), Gaps = 3/36 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
          G +KW+N  +GYGFI  +   ++G+DVF+H++A+ +
Sbjct: 31 GKVKWFNVKRGYGFIHRD---DTGEDVFVHQTAIQA 63


>gi|194217599|ref|XP_001918171.1| PREDICTED: similar to LOC614429 protein [Equus caballus]
          Length = 291

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 43 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 99


>gi|22901742|gb|AAN10050.1| Y-box protein Ct-p50 [Chironomus tentans]
          Length = 317

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57
          G++KW+N   GYGFI      ++  D+F+H+SA+        + ++ +G++V +D V
Sbjct: 32 GTVKWFNVKSGYGFIN---RNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVV 85


>gi|291333272|gb|ADD92980.1| cold shock protein [uncultured archaeon MedDCM-OCT-S04-C163]
          Length = 63

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 4/35 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          +G++KW+N  KG+GFI  EG    GDD+F+H + V
Sbjct: 3  QGTVKWFNQVKGFGFIEQEG----GDDLFVHITQV 33


>gi|86750055|ref|YP_486551.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
           palustris HaA2]
 gi|86573083|gb|ABD07640.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
           HaA2]
          Length = 221

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  + VQ 
Sbjct: 57  GVIKWFDASKGYGFIVPDNGAA---DVLLHVTVLRRDGYQTAYEGARIVVECVQR 108



 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V   +
Sbjct: 146 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRF 197


>gi|1483311|emb|CAA68079.1| Y-box protein [Dugesia japonica]
          Length = 266

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          G +KW+N  +GYGF+      ++ +D+F+H+SA+  +       ++ EG+ + +D V+
Sbjct: 31 GKVKWFNVKRGYGFVC---RNDNQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVK 85


>gi|99080990|ref|YP_613144.1| cold-shock DNA-binding protein family protein [Ruegeria sp.
          TM1040]
 gi|99037270|gb|ABF63882.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040]
          Length = 179

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 6/54 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG---QLVTY 54
          RG +KW++P KGYGFI      + G D+ LH + + + G  ++ +G   ++VT+
Sbjct: 12 RGLVKWFDPAKGYGFIV---CPDDGPDILLHVNVLRNFGQSSVADGAGIEVVTH 62



 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G  E   DVFLH   +  +GL ++  G+ +    V +   G+ +
Sbjct: 108 VKWFDKAKGFGFANVFGRDE---DVFLHVEVLRQSGLSDVQSGEALAM-RVIDGKRGRMA 163

Query: 67  AENLKLVPKSSN 78
            + L     SS+
Sbjct: 164 VDVLAWEAASSD 175


>gi|86145147|ref|ZP_01063478.1| hypothetical protein MED222_04500 [Vibrio sp. MED222]
 gi|85836724|gb|EAQ54844.1| hypothetical protein MED222_04500 [Vibrio sp. MED222]
          Length = 84

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          RG I W++ + G+GF  P    + GD DV +H S +   G  N+ EGQ V  +    +  
Sbjct: 8  RGYITWFHLENGFGFAKP----DHGDIDVLIHISVIEFDGEINVEEGQRVYMEL--EEVK 61

Query: 63 GKYSAENLKLVP 74
          GK     +K++P
Sbjct: 62 GKPHWNAVKVLP 73


>gi|296227166|ref|XP_002759249.1| PREDICTED: Y-box-binding protein 2-like, partial [Callithrix
           jacchus]
          Length = 253

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
           G++KW+N   GYGFI+     ++ +DVF+H++A+        L ++ +G+ V +D V
Sbjct: 97  GTVKWFNVRNGYGFIS---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVV 150


>gi|92117669|ref|YP_577398.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
           hamburgensis X14]
 gi|91800563|gb|ABE62938.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
           X14]
          Length = 217

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V   +
Sbjct: 142 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQFVLVRF 193



 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G IKW++  KGYGFI P+       DV LH + +   G   + EG  +  + VQ 
Sbjct: 53  GVIKWFDASKGYGFIIPD---NGWSDVLLHVTVLRRDGYQTVYEGARLICECVQR 104


>gi|74007889|ref|XP_531701.2| PREDICTED: similar to nuclease sensitive element binding protein 1
           [Canis familiaris]
          Length = 399

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 136 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNHPRKYLRSVGDGETVEFDVVEGE 192


>gi|296201419|ref|XP_002748032.1| PREDICTED: Y-box-binding protein 2-like [Callithrix jacchus]
          Length = 390

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 103 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 159


>gi|187779634|ref|ZP_02996107.1| hypothetical protein CLOSPO_03230 [Clostridium sporogenes ATCC
          15579]
 gi|187773259|gb|EDU37061.1| hypothetical protein CLOSPO_03230 [Clostridium sporogenes ATCC
          15579]
          Length = 69

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
          +H G +KW++ ++GYGFI    S  +G DV++H   V       +L EG+ V +D ++ +
Sbjct: 3  MHTGIVKWFDNERGYGFI----SGNNGKDVYVHSMQVKEKTHNKDLHEGEEVLFDIIERE 58


>gi|297278427|ref|XP_001088540.2| PREDICTED: hypothetical protein LOC700140 [Macaca mulatta]
          Length = 511

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 205 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 261


>gi|260770106|ref|ZP_05879039.1| integral membrane protein [Vibrio furnissii CIP 102972]
 gi|260615444|gb|EEX40630.1| integral membrane protein [Vibrio furnissii CIP 102972]
 gi|315182622|gb|ADT89535.1| hypothetical protein vfu_B01354 [Vibrio furnissii NCTC 11218]
          Length = 195

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 4  RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          +G I  ++ DKGYGFIT P+G ++    +F+H SAV       L +   V++D V+ D  
Sbjct: 2  KGKITRWHDDKGYGFITAPDGKSK----IFVHISAVKHRAK-RLAKNDTVSFD-VEQDRK 55

Query: 63 GKYSAENLKL 72
          G+ +A N++L
Sbjct: 56 GRLNAVNVEL 65


>gi|323158695|gb|EFZ44709.1| cold shock-like protein cspI [Escherichia coli E128010]
          Length = 63

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++
Sbjct: 6  NESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE 47


>gi|311740925|ref|ZP_07714752.1| cold-shock domain family protein [Corynebacterium
          pseudogenitalium ATCC 33035]
 gi|311304445|gb|EFQ80521.1| cold-shock domain family protein [Corynebacterium
          pseudogenitalium ATCC 33035]
          Length = 126

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF++  G     +DV++ R+ V   G+  L  GQ + +D+    A G+
Sbjct: 4  GKVKWYDAEKGFGFVSNPGD----EDVYVGRN-VLPKGVEELFPGQRIDFDF----AAGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 RGPQALRV 62


>gi|212636761|ref|YP_002313286.1| hypothetical protein swp_4029 [Shewanella piezotolerans WP3]
 gi|212558245|gb|ACJ30699.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 251

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPE--GSTESGDDVFLHRSAVASAG 42
          M+ +G I  +N  KGYGFI  E  GS ++  DVF+H SA+   G
Sbjct: 1  MIKKGQIVRWNDSKGYGFIRCEVQGSEQATQDVFMHMSALEPMG 44


>gi|294886195|ref|XP_002771604.1| protein phosphatase 2C ABI2, putative [Perkinsus marinus ATCC
           50983]
 gi|239875310|gb|EER03420.1| protein phosphatase 2C ABI2, putative [Perkinsus marinus ATCC
           50983]
          Length = 624

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 16/83 (19%)

Query: 4   RGSIKWYNPDKGYGFITPEGS-------------TESGDDVFLHRSAVASAG-LFNLTEG 49
           +G IK+Y+P + +G+IT  GS             + S DD++ +R  +  A  +  L  G
Sbjct: 136 KGRIKFYSPQRHFGYITVVGSPEGAEENEEDEDTSASQDDLYFNRRDLLDANEIEKLDTG 195

Query: 50  QLVTYDYVQNDANGKYSAENLKL 72
             VT+D  ++  NG++SA N+K+
Sbjct: 196 MPVTFDIAED--NGQFSAVNVKV 216


>gi|284038260|ref|YP_003388190.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
 gi|283817553|gb|ADB39391.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
          Length = 198

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 3/34 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
           G++K++N  KG+GFI    S  SGDD+F+H SA+
Sbjct: 139 GTVKFFNETKGFGFI---KSDSSGDDIFVHVSAL 169


>gi|85717340|ref|ZP_01048292.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
 gi|85695815|gb|EAQ33721.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
          Length = 202

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G IKW++  KGYGFI P+       DV LH + +   G     EG  +  D VQ 
Sbjct: 38 GVIKWFDASKGYGFIVPDNGWP---DVLLHVTVLRRDGYQTAYEGARLVCDCVQR 89



 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  +G+GF+T    T    D+F+H   +   G+  L  GQ V   +
Sbjct: 127 LERAQVKWFNRLRGFGFLTRGDGTP---DIFVHMETLRRFGITELRPGQFVLVRF 178


>gi|255034693|ref|YP_003085314.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
          fermentans DSM 18053]
 gi|254947449|gb|ACT92149.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
          18053]
          Length = 63

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 3/37 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          ++RG++K++N  KG+GFI PE     G D+F+H + +
Sbjct: 1  MNRGTVKFFNDTKGFGFIAPE---NGGSDIFVHTTGL 34


>gi|50978844|ref|NP_001003127.1| Y-box protein ZONAB-A [Canis lupus familiaris]
 gi|8100510|gb|AAF72335.1|AF171061_1 Y-box protein ZONAB-A [Canis lupus familiaris]
          Length = 304

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H +A+        L ++ +G+ V +D V+ +
Sbjct: 95  GTVKWFNVRNGYGFIN---RNDTKEDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151


>gi|157278086|ref|NP_001098143.1| Y-box binding protein [Oryzias latipes]
 gi|27348122|dbj|BAC45236.1| Y-box binding protein [Oryzias latipes]
          Length = 306

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 43 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 99


>gi|238763346|ref|ZP_04624310.1| Cold shock-like protein [Yersinia kristensenii ATCC 33638]
 gi|238698445|gb|EEP91198.1| Cold shock-like protein [Yersinia kristensenii ATCC 33638]
          Length = 62

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 5/49 (10%)

Query: 7  IKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +KW+N  +GYGFI+P +GS     DV++ ++A+A+    +L+EGQ V +
Sbjct: 1  MKWFNQSEGYGFISPHDGSL----DVYVSKTAIANTKNKSLSEGQDVEF 45


>gi|197632617|gb|ACH71032.1| Y-box binding protein-1 [Salmo salar]
 gi|209732334|gb|ACI67036.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|221222302|gb|ACM09812.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|223646798|gb|ACN10157.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|223649012|gb|ACN11264.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|223672655|gb|ACN12509.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|303663491|gb|ADM16105.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
          Length = 300

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPKKYLRSVGDGETVEFDVVEGE 97


>gi|23007963|ref|ZP_00049605.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 202

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G IKW++  KG+GFI P+   +   DV LH + +   G    +EG  +  + VQ 
Sbjct: 39 GRIKWFDVSKGFGFILPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR 90



 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  +G+GF++    T    D+F+H   +   G+  L  G+ V   Y   D +    
Sbjct: 133 VKWFNRLRGFGFLSRGDGT---PDIFVHMETLRRYGIAELKPGEQVLVRY--GDGSKGAM 187

Query: 67  AENLKLV 73
           A  ++LV
Sbjct: 188 AAEVRLV 194


>gi|163786612|ref|ZP_02181060.1| cold shock protein, DNA-binding [Flavobacteriales bacterium
          ALC-1]
 gi|159878472|gb|EDP72528.1| cold shock protein, DNA-binding [Flavobacteriales bacterium
          ALC-1]
          Length = 63

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 6/50 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++K++N  KG+GFIT E   E+G D+F+H S +       L EG  V Y
Sbjct: 3  GTVKFFNDSKGFGFITNE---ETGKDIFVHVSNLNGV---ELREGDNVEY 46


>gi|115524924|ref|YP_781835.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115518871|gb|ABJ06855.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
           BisA53]
          Length = 219

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  + VQ 
Sbjct: 55  GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGFQTAYEGARIICECVQR 106



 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V   +
Sbjct: 144 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRF 195


>gi|255324986|ref|ZP_05366093.1| cold-shock DNA-binding domain protein [Corynebacterium
          tuberculostearicum SK141]
 gi|255297975|gb|EET77285.1| cold-shock DNA-binding domain protein [Corynebacterium
          tuberculostearicum SK141]
          Length = 126

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF++  G     +DV++ R+ V   G+  L  GQ + +D+    A G+
Sbjct: 4  GKVKWYDAEKGFGFVSNAGD----EDVYVGRN-VLPKGVEELFPGQRIDFDF----AAGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 RGPQALRV 62


>gi|221116100|ref|XP_002159745.1| PREDICTED: similar to Y box binding protein 1 [Hydra
          magnipapillata]
          Length = 308

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+
Sbjct: 38 GTVKWFNVRNGYGFIH---RNDTQNDVFVHQTAIVKNNPNKYLRSVGDGETVEFDVVE 92


>gi|56459785|ref|YP_155066.1| cold shock protein [Idiomarina loihiensis L2TR]
 gi|56178795|gb|AAV81517.1| Cold shock protein [Idiomarina loihiensis L2TR]
          Length = 71

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +KW+N  KG+GFI  E   +   D+F H S +   G   L  GQ V ++
Sbjct: 4  GKVKWFNNSKGFGFIESE---DREGDIFAHYSTIEMEGYRTLKAGQPVEFE 51


>gi|281352187|gb|EFB27771.1| hypothetical protein PANDA_013847 [Ailuropoda melanoleuca]
          Length = 163

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 49  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 105


>gi|157373787|ref|YP_001472387.1| cold-shock DNA-binding domain-containing protein [Shewanella
          sediminis HAW-EB3]
 gi|157316161|gb|ABV35259.1| cold-shock DNA-binding domain protein [Shewanella sediminis
          HAW-EB3]
          Length = 217

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG++  +N +KG+GFI PE    +G DVF+H SA+       +  G  + Y   +  A
Sbjct: 1  MERGTLVRWNDEKGFGFIKPEAG--NGKDVFIHISALKHMARKPMV-GDAIQY-LTEQQA 56

Query: 62 NGKYSA 67
          +GK  A
Sbjct: 57 DGKVKA 62


>gi|8100512|gb|AAF72336.1|AF171062_1 Y-box protein ZONAB-B [Canis lupus familiaris]
          Length = 372

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H +A+        L ++ +G+ V +D V+ +
Sbjct: 95  GTVKWFNVRNGYGFIN---RNDTKEDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151


>gi|301778155|ref|XP_002924500.1| PREDICTED: hypothetical protein LOC100473556 [Ailuropoda
           melanoleuca]
          Length = 199

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 49  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 105


>gi|153938873|ref|YP_001391027.1| cold shock protein [Clostridium botulinum F str. Langeland]
 gi|170756146|ref|YP_001781321.1| cold shock protein [Clostridium botulinum B1 str. Okra]
 gi|152934769|gb|ABS40267.1| cold shock protein [Clostridium botulinum F str. Langeland]
 gi|169121358|gb|ACA45194.1| cold shock protein [Clostridium botulinum B1 str. Okra]
 gi|295319083|gb|ADF99460.1| cold shock protein [Clostridium botulinum F str. 230613]
          Length = 69

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
          +H G++KW++ ++GYGFI    +  +G DV++H   +       +L EG+ V +D V+ +
Sbjct: 3  MHTGTVKWFDNERGYGFI----AGNNGKDVYVHYMQIKEKTHNKDLHEGEEVLFDIVEKE 58


>gi|312377865|gb|EFR24595.1| hypothetical protein AND_10704 [Anopheles darlingi]
          Length = 428

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 7/57 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
           G +KW+N   GYGFI   G T   +DVF+H+SA+A       + ++ +G+ V +D V
Sbjct: 93  GVVKWFNVKSGYGFIN-RGDTH--EDVFVHQSAIARNNPKKAVRSVGDGEEVEFDVV 146


>gi|75675801|ref|YP_318222.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
 gi|74420671|gb|ABA04870.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
           Nb-255]
          Length = 217

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  D VQ 
Sbjct: 53  GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVCDCVQR 104



 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V   +
Sbjct: 142 LERAQVKWFNRLRGFGFLT---RGEGTPDIFVHMETLRRFGITELRPGQFVLVRF 193


>gi|322370080|ref|ZP_08044642.1| cold shock protein [Haladaptatus paucihalophilus DX253]
 gi|320550416|gb|EFW92068.1| cold shock protein [Haladaptatus paucihalophilus DX253]
          Length = 64

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G + ++N   GYGFI+   + ++ DDVF H   V  A   +L EGQ + +D  Q
Sbjct: 3  KGKVDFFNDTGGYGFIS---TDDADDDVFFHMEDVGGA---DLEEGQEIEFDIEQ 51


>gi|311114545|ref|YP_003985766.1| cold-shock domain family protein [Gardnerella vaginalis ATCC
          14019]
 gi|310946039|gb|ADP38743.1| cold-shock domain family protein [Gardnerella vaginalis ATCC
          14019]
          Length = 129

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G ++WY+  KGYGFI      E G DVFL  SA+  + +  L +G  V +  V+
Sbjct: 4  GRVRWYDSKKGYGFIC----DEDGKDVFLPSSALPES-VKELRKGTRVEFSVVE 52


>gi|300770548|ref|ZP_07080427.1| competence factor transporter ComB [Sphingobacterium spiritivorum
          ATCC 33861]
 gi|300763024|gb|EFK59841.1| competence factor transporter ComB [Sphingobacterium spiritivorum
          ATCC 33861]
          Length = 63

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 7/54 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G++K++N  KG+GFITP+   +   DVF+H + + +     + EG  VTY+
Sbjct: 1  MNTGTVKFFNETKGFGFITPQ---DGSADVFVHTTGLKN----QVREGDEVTYE 47


>gi|160873811|ref|YP_001553127.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS195]
 gi|160859333|gb|ABX47867.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195]
 gi|315266036|gb|ADT92889.1| Excalibur domain protein [Shewanella baltica OS678]
          Length = 219

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ RG +  +N +KG+GFI PE +  +  DVF+H S +       +    ++    VQND
Sbjct: 2  LMDRGVLVRWNDEKGFGFIQPEKN--AAQDVFIHISVLKKMARKPIVGDSILFQTEVQND 59

Query: 61 ANGK---YSAENLKLVPKSS 77
             K    S E + +V  SS
Sbjct: 60 GKRKAVIASIEGVAVVAASS 79


>gi|124003277|ref|ZP_01688127.1| conserved domain protein [Microscilla marina ATCC 23134]
 gi|123991375|gb|EAY30806.1| conserved domain protein [Microscilla marina ATCC 23134]
          Length = 64

 Score = 39.3 bits (90), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 7/54 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +++G +K++  DKGYGFIT   ++++G+D+F H S         L E   VTY+
Sbjct: 1  MNKGVVKFFKEDKGYGFIT---NSDTGEDIFFHVSDTQDQ----LFENDNVTYE 47


>gi|126726386|ref|ZP_01742227.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126704249|gb|EBA03341.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 178

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           IKW++  KG+GF    GS+   DD+F+H   +   GL +L  G+ +    + +   GK +
Sbjct: 112 IKWFDKSKGFGFANEFGSS---DDIFVHVETLRRYGLADLMPGEAICLK-IADGERGKMA 167

Query: 67  AE 68
            E
Sbjct: 168 VE 169



 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GF+    S E G D+ LH + + + G  ++ +   +    VQ+ A G 
Sbjct: 18 GKVKWFDQAKGFGFVV---SDEGGSDILLHANVLRNFGQSSIADATPLVI-AVQDTARGI 73

Query: 65 YSAENLKL 72
           + E + +
Sbjct: 74 QATEVISI 81


>gi|305665006|ref|YP_003861293.1| cold shock protein-like CspA family [Maribacter sp. HTCC2170]
 gi|88707420|gb|EAQ99665.1| cold shock protein-like CspA family [Maribacter sp. HTCC2170]
          Length = 63

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFIT EG  +   D F+H S +       + EG  V +D    + 
Sbjct: 1  MNKGTVKFFNNAKGFGFITEEGVDK---DHFVHVSGLVDE----IREGDEVEFDL--QEG 51

Query: 62 NGKYSAENLKLV 73
          N   +A N+K++
Sbjct: 52 NKGLNAVNVKVI 63


>gi|332521005|ref|ZP_08397465.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
 gi|332043535|gb|EGI79731.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
          Length = 63

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 9/70 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KG+GFIT EGS +   D F+H S +       + EG  V +D +Q    G
Sbjct: 3  QGTVKFFNDSKGFGFITEEGSDK---DHFVHISGLID----EVREGDAVEFD-LQEGRKG 54

Query: 64 KYSAENLKLV 73
            +A N+K++
Sbjct: 55 -MNAVNVKVI 63


>gi|183601800|ref|ZP_02963170.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683669|ref|YP_002470052.1| cold shock protein [Bifidobacterium animalis subsp. lactis AD011]
 gi|183219406|gb|EDT90047.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621319|gb|ACL29476.1| cold shock protein [Bifidobacterium animalis subsp. lactis AD011]
          Length = 129

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G I+W++  KGYGFI    + + G DVFL ++A+   G+ N  +G  V Y  ++
Sbjct: 4  GRIRWFDAKKGYGFI----AGDDGKDVFLPQTALPQ-GVRNPRKGAKVEYSVIE 52


>gi|332849851|ref|XP_001142318.2| PREDICTED: y-box-binding protein 2-like [Pan troglodytes]
          Length = 333

 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L  + +G+ V +D V+ +
Sbjct: 65  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQAAIKRNNPRKFLRTVGDGETVEFDVVEGE 121


>gi|148645032|gb|ABR01046.1| Csp [uncultured Geobacter sp.]
          Length = 56

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +N  KG+GF+      E+GDDVF H SA+   G  +L EG  V ++  +
Sbjct: 1  FNDGKGFGFL----EQENGDDVFCHFSAITGDGFKSLAEGDKVKFEVTK 45


>gi|194131842|gb|ACF33226.1| Y-box protein Lyb1 [Lethenteron japonicum]
          Length = 331

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D V+ +
Sbjct: 27 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVEGE 83


>gi|217971871|ref|YP_002356622.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS223]
 gi|217497006|gb|ACK45199.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ RG +  +N +KG+GFI PE +  +  DVF+H S +       +    ++    VQND
Sbjct: 2  LMDRGVLVRWNDEKGFGFIQPEKN--AAQDVFIHISVLKKMARKPIVGDSILFQTEVQND 59

Query: 61 ANGK---YSAENLKLVPKSS 77
             K    S E + +V  SS
Sbjct: 60 GKRKAVIASIEGVAVVAASS 79


>gi|116334042|ref|YP_795569.1| cold shock protein [Lactobacillus brevis ATCC 367]
 gi|116099389|gb|ABJ64538.1| cold-shock DNA-binding protein family [Lactobacillus brevis ATCC
          367]
          Length = 74

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K YN  +G+GFIT    T +  DVF++ + +   G   L  GQ V +  VQ    G 
Sbjct: 4  GKVKSYNEQRGFGFIT----TPADGDVFVYYTGIIGEGFRKLEAGQTVQFVIVQG-MRGP 58

Query: 65 YSAENLKLVPKSSN 78
           +A+   +V  S+ 
Sbjct: 59 QAAKVTPVVTASTE 72


>gi|255038900|ref|YP_003089521.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
          fermentans DSM 18053]
 gi|254951656|gb|ACT96356.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
          18053]
          Length = 63

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 7/54 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++RG++K++N  KG+GFI PE     G DVF+H + +      ++ E   V YD
Sbjct: 1  MNRGTVKFFNDTKGFGFIAPE---HGGADVFVHTTGLND----DIRENDSVYYD 47


>gi|51105064|gb|AAT97092.1| Y-box factor-like protein [Lymnaea stagnalis]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI  + + E   DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 34 GTVKWFNVKSGYGFINRDDTKE---DVFVHQTAIIKNNPRKYLRSVGDGEKVEFDVVEGE 90


>gi|3821923|gb|AAC69703.1| major cold shock protein [Lactobacillus helveticus]
          Length = 50

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 4/45 (8%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          KG+GFIT  GS     DVF+H SA+ + G  +L EGQ V+YD  Q
Sbjct: 1  KGFGFIT--GSDNK--DVFVHFSAIKTDGFKSLEEGQKVSYDVEQ 41


>gi|289178440|gb|ADC85686.1| Cold shock protein [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 168

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G I+W++  KGYGFI    + + G DVFL ++A+   G+ N  +G  V Y  ++
Sbjct: 43 GRIRWFDAKKGYGFI----AGDDGKDVFLPQTALPQ-GVRNPRKGAKVEYSVIE 91


>gi|86138853|ref|ZP_01057425.1| cold shock DNA-binding domain protein [Roseobacter sp. MED193]
 gi|85824500|gb|EAQ44703.1| cold shock DNA-binding domain protein [Roseobacter sp. MED193]
          Length = 180

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF    G +E   DVFLH   +  +GL +L  G+ +    + +   G+ +
Sbjct: 108 VKWFNKGKGFGFANIFGRSE---DVFLHVEVLRQSGLADLQPGEALAPRVI-DGKRGQMA 163

Query: 67  AE 68
           AE
Sbjct: 164 AE 165



 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KG+GF+    S   G D+ LH + + + G  ++ +G  +     + D  G
Sbjct: 12 QGLVKWFDPTKGFGFVV---SDLGGPDILLHVNVLRNFGQSSVADGTRIEIVTHRTD-RG 67

Query: 64 KYSAENLKLVP 74
            + E L + P
Sbjct: 68 VQAVEVLAIHP 78


>gi|325962251|ref|YP_004240157.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323468338|gb|ADX72023.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 127

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF+    + E G +VFL +S++   G+  L  G  V +      A+G+
Sbjct: 4  GKVKWYDKEKGFGFL----AGEDGQEVFLPKSSLPE-GVTELKAGTRVEFGV----ADGR 54

Query: 65 YSAENLKL 72
            A+ L L
Sbjct: 55 KGAQALGL 62


>gi|304411240|ref|ZP_07392855.1| Excalibur domain protein [Shewanella baltica OS183]
 gi|307306535|ref|ZP_07586278.1| Excalibur domain protein [Shewanella baltica BA175]
 gi|304350433|gb|EFM14836.1| Excalibur domain protein [Shewanella baltica OS183]
 gi|306910826|gb|EFN41254.1| Excalibur domain protein [Shewanella baltica BA175]
          Length = 219

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ RG +  +N +KG+GFI PE +  +  DVF+H S +       +    ++    VQND
Sbjct: 2  LMDRGVLVRWNDEKGFGFIQPEKN--AAQDVFIHISVLKKMARKPIVGDSILFQTEVQND 59

Query: 61 ANGK---YSAENLKLVPKSS 77
             K    S E + +V  SS
Sbjct: 60 GKRKAVIASIEGVAVVAASS 79


>gi|300676881|gb|ADK26753.1| lin-28 homolog B [Zonotrichia albicollis]
          Length = 245

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  ES  DVF+H+S +   G  +L EG+ V + +
Sbjct: 27 GHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTF 82


>gi|229816847|ref|ZP_04447129.1| hypothetical protein BIFANG_02095 [Bifidobacterium angulatum DSM
          20098]
 gi|229785863|gb|EEP21977.1| hypothetical protein BIFANG_02095 [Bifidobacterium angulatum DSM
          20098]
          Length = 129

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G ++W++  KGYGFI    ++E G+DVFL  +A+  AG   L +   V Y  +
Sbjct: 4  GRVRWFDAAKGYGFI----ASEKGEDVFLPAAAL-PAGTTTLRKNAKVEYAVI 51


>gi|321477873|gb|EFX88831.1| hypothetical protein DAPPUDRAFT_311200 [Daphnia pulex]
          Length = 322

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57
          G +KW+N   GYGFI      ++ +D+F+H++A++       + ++ +G++V +D V
Sbjct: 26 GVVKWFNVKSGYGFIN---RNDTKEDIFVHQTAISRNNPRKAVRSVGDGEIVEFDVV 79


>gi|324511273|gb|ADY44699.1| Y-box factor [Ascaris suum]
          Length = 269

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           G +KWY+    YGFI  +   +  +DVF+H++A+A +      L +L EG+ V +D V+
Sbjct: 80  GKVKWYSVRYHYGFIARD--DDVANDVFVHQTAIAKSRMVKYYLRSLEEGEEVLFDIVE 136


>gi|301513705|ref|ZP_07238942.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB058]
 gi|301598130|ref|ZP_07243138.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB059]
          Length = 61

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +N  KG+GFI     T+ G DVF H S + + G   L EGQ V +   Q
Sbjct: 1  FNETKGFGFI----QTDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQ 45


>gi|209885160|ref|YP_002289017.1| cold-shock DNA-binding domain protein [Oligotropha carboxidovorans
           OM5]
 gi|209873356|gb|ACI93152.1| cold-shock DNA-binding domain protein [Oligotropha carboxidovorans
           OM5]
          Length = 191

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  +G+GF++     E   D+F+H   +   G+  L  GQ V   Y
Sbjct: 116 LERAQVKWFNRLRGFGFVS---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRY 167



 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G IKW++  KGYGFI P+       D+ LH + +   G     EG  +  + VQ  
Sbjct: 27 GVIKWFDASKGYGFIVPDNGLP---DILLHVTVLRRDGYQTAYEGARLICECVQRQ 79


>gi|111182511|gb|ABH07676.1| cold-shock domain protein [Scophthalmus maximus]
          Length = 297

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97


>gi|73950970|ref|XP_855993.1| PREDICTED: similar to Nuclease sensitive element binding protein 1
           (Y-box binding protein-1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)... isoform [Canis
           familiaris]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGF+      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 63  GTVKWFNVRNGYGFLN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119


>gi|27379521|ref|NP_771050.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27352673|dbj|BAC49675.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 224

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           VH G IKW++  KGYGFI P+       DV LH + +   G     EG  +  + +Q 
Sbjct: 58  VH-GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGFQTAYEGARIVVECIQR 111



 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V   +
Sbjct: 149 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRF 200


>gi|306835559|ref|ZP_07468572.1| cold-shock domain family protein [Corynebacterium accolens ATCC
          49726]
 gi|304568559|gb|EFM44111.1| cold-shock domain family protein [Corynebacterium accolens ATCC
          49726]
          Length = 126

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF++  G     +DV++ R+ V   G+  +  GQ + +D+    A G+
Sbjct: 4  GKVKWYDAEKGFGFVSNPGD----EDVYVGRN-VLPQGVEEIFPGQRIEFDF----AAGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 RGPQALRV 62


>gi|30248726|ref|NP_840796.1| cold shock DNA-binding domain-containing protein [Nitrosomonas
          europaea ATCC 19718]
 gi|30180321|emb|CAD84628.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718]
          Length = 204

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 7/74 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQN 59
          M ++G I  +  DKG+GF+TP G    G+ +F+H ++ +S       EG +LVTY+ +  
Sbjct: 1  MRYQGRITTWKDDKGFGFVTPNG---GGEQIFVHINSFSSRQ--RRPEGNELVTYE-LTV 54

Query: 60 DANGKYSAENLKLV 73
          D+ G+  A+ +  V
Sbjct: 55 DSKGRSQAKAVAFV 68


>gi|227501406|ref|ZP_03931455.1| cold shock protein [Corynebacterium accolens ATCC 49725]
 gi|227077431|gb|EEI15394.1| cold shock protein [Corynebacterium accolens ATCC 49725]
          Length = 126

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+ +KG+GF++  G     +DV++ R+ V   G+  +  GQ + +D+    A G+
Sbjct: 4  GKVKWYDAEKGFGFVSNPGD----EDVYVGRN-VLPKGVEEIFPGQRIEFDF----AAGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 RGPQALRV 62


>gi|227539041|ref|ZP_03969090.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241097|gb|EEI91112.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 63

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K++N  KG+GFITP+   +   D+F+H + + +     + EG  VTY+ V+   
Sbjct: 1  MNTGTVKFFNETKGFGFITPQ---DGSGDIFVHTTGLKN----QVREGDEVTYE-VERTP 52

Query: 62 NGKYSAENLKL 72
           G  +A N++L
Sbjct: 53 KG-LNAINVRL 62


>gi|3121935|sp|Q56922|CSPA_YEREN RecName: Full=Major cold shock protein
 gi|1402789|gb|AAC80259.1| major cold-shock protein [Yersinia enterocolitica]
          Length = 46

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          DKG+GFITP    +   DVF+H SA+ S     L EGQ V +
Sbjct: 1  DKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEF 39


>gi|118575691|ref|YP_875434.1| cold-shock protein [Cenarchaeum symbiosum A]
 gi|118194212|gb|ABK77130.1| cold-shock protein [Cenarchaeum symbiosum A]
          Length = 63

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 8/54 (14%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + +G++KW+N  +G+GFI      E+G D+F+H++ +      NL +G  V ++
Sbjct: 1  MEQGTVKWFNRTRGFGFI----ERETGADLFVHKTNIDG----NLRDGDKVEFE 46


>gi|47220428|emb|CAG03208.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 298

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97


>gi|126175891|ref|YP_001052040.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS155]
 gi|125999096|gb|ABN63171.1| cold-shock DNA-binding protein family [Shewanella baltica OS155]
          Length = 203

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ RG +  +N +KG+GFI PE +  +  DVF+H S +       +    ++    VQND
Sbjct: 2  LMDRGVLVRWNDEKGFGFIQPEKN--AAQDVFIHISVLKKMARKPIVGDSILFQTEVQND 59

Query: 61 ANGK---YSAENLKLVPKSS 77
             K    S E + ++  SS
Sbjct: 60 GKRKAVIASIEGVAVIAASS 79


>gi|118082706|ref|XP_422970.2| PREDICTED: hypothetical protein [Gallus gallus]
 gi|326912009|ref|XP_003202347.1| PREDICTED: cold shock domain-containing protein C2-like [Meleagris
           gallopavo]
          Length = 153

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           +++G  K ++  +G+GFITPE  TE   D+F+H S +   G +   EG  VTY       
Sbjct: 68  IYKGVCKQFSRSQGHGFITPENGTE---DIFVHVSDI--EGEYVPVEGDEVTYKVCPIPP 122

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 123 KNQKFQAVEVVL 134


>gi|114765321|ref|ZP_01444438.1| cold shock DNA-binding domain protein [Pelagibaca bermudensis
          HTCC2601]
 gi|114542301|gb|EAU45330.1| cold shock DNA-binding domain protein [Roseovarius sp. HTCC2601]
          Length = 180

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GF+    + E G D+ LH + + + G  ++ +G  +     Q    G 
Sbjct: 17 GKVKWFDPVKGFGFVI---ADEGGPDILLHANVLRNFGQSSVADGARIEVS-AQRTERGI 72

Query: 65 YSAENLKLVPKSS 77
           + E  ++ P  +
Sbjct: 73 QATEVRRIEPPEA 85



 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G +   DDVF+H   +  +GL +L  G+ +    + N   G+ +
Sbjct: 112 VKWFDKAKGFGFANVFGRS---DDVFIHIEVLRRSGLADLQPGEALAIRVI-NGKRGQMA 167

Query: 67  AE 68
            E
Sbjct: 168 TE 169


>gi|73950968|ref|XP_848371.1| PREDICTED: similar to Nuclease sensitive element binding protein 1
           (Y-box binding protein-1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)... isoform [Canis
           familiaris]
 gi|73950976|ref|XP_856109.1| PREDICTED: similar to Nuclease sensitive element binding protein 1
           (Y-box binding protein-1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)... isoform [Canis
           familiaris]
          Length = 326

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGF+      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 63  GTVKWFNVRNGYGFLN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119


>gi|91081961|ref|XP_966594.1| PREDICTED: similar to Y-box binding protein isoform 1 [Tribolium
          castaneum]
 gi|270007364|gb|EFA03812.1| hypothetical protein TcasGA2_TC013925 [Tribolium castaneum]
          Length = 297

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57
          G++KW+N   GYGFI      ++ +DVF+H+SA+        + ++ +G++V +  V
Sbjct: 31 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVV 84


>gi|83814564|ref|YP_446548.1| hypothetical protein SRU_2449 [Salinibacter ruber DSM 13855]
 gi|294508486|ref|YP_003572544.1| Cold shock-like protein cspC [Salinibacter ruber M8]
 gi|83755958|gb|ABC44071.1| conserved domain protein [Salinibacter ruber DSM 13855]
 gi|294344814|emb|CBH25592.1| Cold shock-like protein cspC [Salinibacter ruber M8]
          Length = 75

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 6/61 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA--SAGLFNLTEGQLVTYDYVQN 59
          + +G +K+++  +G+GFI P   +E   DVFLH + ++  ++G  +L EGQ + Y+  Q 
Sbjct: 1  MEKGKLKFFDTSRGFGFIEPLDGSE---DVFLHANNISGMTSGE-DLREGQTIEYETEQT 56

Query: 60 D 60
          +
Sbjct: 57 E 57


>gi|253575315|ref|ZP_04852653.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845312|gb|EES73322.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 109

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G ++ Y  D+G+GFI      E G DV  H +AV  A    L  G  VT++ +  D  GK
Sbjct: 47  GYVRRYYDDRGFGFI----GREDGSDVHFHINAVQGAD--KLRTGDRVTFE-IGEDKRGK 99

Query: 65  YSAENLKLV 73
            +A+N++L 
Sbjct: 100 PTAKNVRLA 108


>gi|167045316|gb|ABZ09974.1| putative cold-shock DNA-binding domain protein [uncultured marine
          crenarchaeote HF4000_APKG9P22]
          Length = 64

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 3/34 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G++KW+N  KG+GFI  EG  +   D+F+H++ V
Sbjct: 4  GTVKWFNQTKGFGFIEREGEAK---DLFVHKTEV 34


>gi|326802047|ref|YP_004319866.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
 gi|326552811|gb|ADZ81196.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
          Length = 63

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +K++N  KG+GFITP+   + G ++F+H S +       + E   V+++ VQ   
Sbjct: 1  MQKGIVKFFNETKGFGFITPQ---DGGREIFVHSSGLKD----RIRENDDVSFE-VQQGQ 52

Query: 62 NGKYSAENLKLV 73
           G  +A N+KL+
Sbjct: 53 KGP-NAVNVKLI 63


>gi|296389633|ref|ZP_06879108.1| hypothetical protein PaerPAb_15856 [Pseudomonas aeruginosa PAb1]
          Length = 84

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          +WY+ DKG+GFI P+     G++VFLH SA    G     +G  V +     DA G+  A
Sbjct: 4  RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 56

Query: 68 ENLKL 72
          E  +L
Sbjct: 57 ERARL 61


>gi|260904269|ref|ZP_05912591.1| cold shock protein [Brevibacterium linens BL2]
          Length = 126

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G +KW++ DKG+GF+      E G   FLH S +       +T+G  + YD V +
Sbjct: 4  GRVKWFDVDKGFGFVI----AEDGSQAFLHSSVLPEDA--EVTKGTRLDYDVVDS 52


>gi|189054669|dbj|BAG37519.1| unnamed protein product [Homo sapiens]
          Length = 364

 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 96  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152


>gi|114666139|ref|XP_511973.2| PREDICTED: y-box-binding protein 2 [Pan troglodytes]
          Length = 365

 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 97  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153


>gi|126662142|ref|ZP_01733141.1| cold shock protein [Flavobacteria bacterium BAL38]
 gi|126625521|gb|EAZ96210.1| cold shock protein [Flavobacteria bacterium BAL38]
          Length = 148

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 7/51 (13%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           G+I ++N  KG+GFI    + E+G+  F+H S +    L ++ EG LVTYD
Sbjct: 89  GTIDFFNDSKGFGFIK---AVETGEKYFVHISGL----LDDVKEGNLVTYD 132


>gi|91081963|ref|XP_975913.1| PREDICTED: similar to Y-box binding protein isoform 2 [Tribolium
          castaneum]
          Length = 286

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57
          G++KW+N   GYGFI      ++ +DVF+H+SA+        + ++ +G++V +  V
Sbjct: 31 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVV 84


>gi|73950974|ref|XP_856066.1| PREDICTED: similar to Nuclease sensitive element binding protein 1
           (Y-box binding protein-1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)... isoform [Canis
           familiaris]
          Length = 314

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGF+      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 63  GTVKWFNVRNGYGFLN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119


>gi|45382293|ref|NP_990737.1| Rous sarcoma virus transcription enhancer factor II [Gallus gallus]
 gi|727428|gb|AAA64706.1| Rous sarcoma virus transcription enhancer factor II [Gallus gallus]
          Length = 298

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 90  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLASVGDGETVEFDVVEGE 146


>gi|83591523|ref|YP_425275.1| cold-shock DNA-binding protein family protein [Rhodospirillum
           rubrum ATCC 11170]
 gi|83574437|gb|ABC20988.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
           11170]
          Length = 882

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG++K Y+P KG G+I P+G    G D+ + ++ + + G+  L +   V    +  D  G
Sbjct: 819 RGTVKHYDPIKGRGYIIPDG---KGSDILIEKAVLKACGMGRLKKNDRVV--VITKDQGG 873

Query: 64  KYSAENLK 71
           K  A +++
Sbjct: 874 KPVAIDVR 881


>gi|312083329|ref|XP_003143816.1| hypothetical protein LOAG_08235 [Loa loa]
 gi|307761020|gb|EFO20254.1| hypothetical protein LOAG_08235 [Loa loa]
          Length = 310

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 8/60 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-----LTEGQLVTYDYVQ 58
           +G +KWY+    YGFI  +   + G+DVF+H++A+  + +       L +G+ V +D V+
Sbjct: 77  KGRVKWYSVRFHYGFIARD---DKGNDVFVHQTAITKSRIIKYYLRTLGDGEEVLFDIVE 133


>gi|300676769|gb|ADK26645.1| lin-28 homolog B [Zonotrichia albicollis]
          Length = 245

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  ES  DVF+H+S +   G  +L EG+ V + +
Sbjct: 27 GHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTF 82


>gi|218463829|ref|ZP_03503920.1| cold-shock DNA-binding domain-containing protein [Rhizobium etli
          Kim 5]
          Length = 54

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE 48
          M   G++K++N DKG+GFI PE    +G   F +       GL  LTE
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPEPGAAAGYISFHNFCRPRPPGLAGLTE 48


>gi|167042126|gb|ABZ06860.1| putative cold-shock DNA-binding domain protein [uncultured marine
          crenarchaeote HF4000_ANIW93E5]
          Length = 69

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++KW+N  KG+GFI  EG  +   D+F+H++ V       +++G  V ++
Sbjct: 9  GTVKWFNQTKGFGFIEREGDEK---DLFVHKTEVEGT----ISDGDKVEFE 52


>gi|156415990|ref|NP_057066.2| Y-box-binding protein 2 [Homo sapiens]
 gi|116242847|sp|Q9Y2T7|YBOX2_HUMAN RecName: Full=Y-box-binding protein 2; AltName: Full=Contrin;
           AltName: Full=DNA-binding protein C; Short=Dbpc;
           AltName: Full=Germ cell-specific Y-box-binding protein;
           AltName: Full=MSY2 homolog
 gi|21707292|gb|AAH33800.1| Y box binding protein 2 [Homo sapiens]
          Length = 364

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 96  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152


>gi|76802909|ref|YP_331004.1| cold shock protein [Natronomonas pharaonis DSM 2160]
 gi|76558774|emb|CAI50367.1| probable cold shock protein [Natronomonas pharaonis DSM 2160]
          Length = 64

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G + ++N   GYGFI    + ES +DVF H   +      +L EGQ V +D  Q D
Sbjct: 3  KGEVDFFNDTGGYGFID---TDESDEDVFFHMEDIGGP---DLEEGQEVEFDIEQAD 53


>gi|4837737|gb|AAD30662.1| germ cell specific Y-box binding protein [Homo sapiens]
 gi|28838612|gb|AAH47760.1| Y box binding protein 2 [Homo sapiens]
 gi|119610629|gb|EAW90223.1| Y box binding protein 2, isoform CRA_a [Homo sapiens]
 gi|119610630|gb|EAW90224.1| Y box binding protein 2, isoform CRA_a [Homo sapiens]
          Length = 364

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 96  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152


>gi|89054965|ref|YP_510416.1| cold-shock DNA-binding protein family protein [Jannaschia sp.
          CCS1]
 gi|88864514|gb|ABD55391.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1]
          Length = 181

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GF+    S E G D+ LH + + S G  ++ EG  V     Q    G 
Sbjct: 24 GVVKWFDTTKGFGFVL---SDEGGPDILLHANVLRSFGRGSIAEGARVML-RTQATGRGL 79

Query: 65 YSAENLKL 72
           + E + +
Sbjct: 80 QAVEIIAI 87



 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G +E   DVF+H   +  +G   L  G+ V    V +   G+ +
Sbjct: 117 VKWFDKAKGFGFANVFGHSE---DVFVHVEVLRRSGFTELQPGEAVAMKVV-DGPRGRMA 172

Query: 67  AE 68
           AE
Sbjct: 173 AE 174


>gi|193212293|ref|YP_001998246.1| cold-shock DNA-binding domain-containing protein [Chlorobaculum
          parvum NCIB 8327]
 gi|193085770|gb|ACF11046.1| cold-shock DNA-binding domain protein [Chlorobaculum parvum NCIB
          8327]
          Length = 88

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 5/44 (11%)

Query: 4  RGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNL 46
          +  +KW++  KGYGFI  P+G    G+D+F+H SA+ S   F +
Sbjct: 3  KSKVKWFDGKKGYGFILNPDG----GEDIFVHFSAIISDQSFKV 42


>gi|171743331|ref|ZP_02919138.1| hypothetical protein BIFDEN_02462 [Bifidobacterium dentium ATCC
          27678]
 gi|306823276|ref|ZP_07456652.1| cold-shock domain family protein [Bifidobacterium dentium ATCC
          27679]
 gi|309801917|ref|ZP_07696032.1| cold-shock DNA-binding domain protein [Bifidobacterium dentium
          JCVIHMP022]
 gi|171278945|gb|EDT46606.1| hypothetical protein BIFDEN_02462 [Bifidobacterium dentium ATCC
          27678]
 gi|304553908|gb|EFM41819.1| cold-shock domain family protein [Bifidobacterium dentium ATCC
          27679]
 gi|308221473|gb|EFO77770.1| cold-shock DNA-binding domain protein [Bifidobacterium dentium
          JCVIHMP022]
          Length = 129

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G ++W++ +KGYGFI      E G DVFL   A+   G+  L +G  V Y  ++
Sbjct: 4  GRVRWFDTNKGYGFI----QNEQGADVFLPAVALPE-GVKTLRKGAKVEYSVIE 52


>gi|120435933|ref|YP_861619.1| cold shock-like protein [Gramella forsetii KT0803]
 gi|117578083|emb|CAL66552.1| cold shock-like protein [Gramella forsetii KT0803]
          Length = 64

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          +  G +K++N  KG+GFI  EGS E   D+F+H S +
Sbjct: 1  MQEGKVKFFNNTKGFGFIQAEGSNE---DIFVHSSGL 34


>gi|14270385|emb|CAC39432.1| cold-shock domain protein [Takifugu rubripes]
          Length = 263

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 24 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 80


>gi|241190702|ref|YP_002968096.1| cold shock protein [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196108|ref|YP_002969663.1| cold shock protein [Bifidobacterium animalis subsp. lactis DSM
          10140]
 gi|240249094|gb|ACS46034.1| cold shock protein [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250662|gb|ACS47601.1| cold shock protein [Bifidobacterium animalis subsp. lactis DSM
          10140]
 gi|295793691|gb|ADG33226.1| cold shock protein [Bifidobacterium animalis subsp. lactis V9]
          Length = 147

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G I+W++  KGYGFI    + + G DVFL ++A+   G+ N  +G  V Y  ++
Sbjct: 22 GRIRWFDAKKGYGFI----AGDDGKDVFLPQTALPQ-GVRNPRKGAKVEYSVIE 70


>gi|256089134|ref|XP_002580671.1| Y box binding protein [Schistosoma mansoni]
 gi|238666270|emb|CAZ36910.1| Y box binding protein, putative [Schistosoma mansoni]
          Length = 167

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI  +   ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|56754985|gb|AAW25675.1| SJCHGC00971 protein [Schistosoma japonicum]
          Length = 250

 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI  +   ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DANGKYS 66
          D   + S
Sbjct: 84 DKGDEAS 90


>gi|114046090|ref|YP_736640.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-7]
 gi|113887532|gb|ABI41583.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7]
          Length = 197

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +  +N +KG+GFI PE S   G DVF+H + +       L    ++    +QND 
Sbjct: 1  MERGILVRWNDEKGFGFIQPEDS--KGKDVFIHITVLKHMARKPLVGDSILYRTEIQNDG 58

Query: 62 NGK 64
            K
Sbjct: 59 KVK 61


>gi|315654218|ref|ZP_07907126.1| cold-shock domain family protein [Mobiluncus curtisii ATCC 51333]
 gi|315657883|ref|ZP_07910763.1| cold-shock domain family protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|315491253|gb|EFU80870.1| cold-shock domain family protein [Mobiluncus curtisii ATCC 51333]
 gi|315491680|gb|EFU81291.1| cold-shock domain family protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 125

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+  KG+GF+    +   G++VFLH SA+    + +L  G  V Y  V  D    
Sbjct: 4  GKVKWYDAVKGFGFV----AGADGEEVFLHASALPE-NVVDLHPGTKVEYSVV--DGKRG 56

Query: 65 YSAENLKLVPK 75
            A N+ +V K
Sbjct: 57 RQAMNVTVVEK 67


>gi|298345620|ref|YP_003718307.1| cold-shock DNA-binding domain-containing protein [Mobiluncus
          curtisii ATCC 43063]
 gi|304390691|ref|ZP_07372644.1| cold-shock domain family protein [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|298235681|gb|ADI66813.1| cold-shock DNA-binding domain protein [Mobiluncus curtisii ATCC
          43063]
 gi|304326447|gb|EFL93692.1| cold-shock domain family protein [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
          Length = 125

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+  KG+GF+    +   G++VFLH SA+    + +L  G  V Y  V  D    
Sbjct: 4  GKVKWYDAVKGFGFV----AGADGEEVFLHASALPE-NVVDLHPGTKVEYSVV--DGKRG 56

Query: 65 YSAENLKLVPK 75
            A N+ +V K
Sbjct: 57 RQAMNVTVVEK 67


>gi|316934326|ref|YP_004109308.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315602040|gb|ADU44575.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 231

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V   +
Sbjct: 156 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRF 207



 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G IKW++  KGYGF+ P+       DV LH + +   G     EG  +  + VQ 
Sbjct: 67  GFIKWFDASKGYGFVVPDNGW---PDVLLHVTVLRRDGYQTAYEGARIVVECVQR 118


>gi|262373361|ref|ZP_06066640.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
 gi|262313386|gb|EEY94471.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
          Length = 97

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 12/73 (16%)

Query: 3  HRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
          ++G +K YNPDKG+GFI T EG      D+F H S   AS G     E       +V  +
Sbjct: 6  YQGKVKQYNPDKGFGFIATTEG------DIFFHISDFPASEGEPKRNE----KVKFVALE 55

Query: 61 ANGKYSAENLKLV 73
           NGK+ A  ++ V
Sbjct: 56 NNGKFKAVQIERV 68


>gi|149176125|ref|ZP_01854741.1| cold-shock DNA-binding domain protein [Planctomyces maris DSM
          8797]
 gi|148844992|gb|EDL59339.1| cold-shock DNA-binding domain protein [Planctomyces maris DSM
          8797]
          Length = 66

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G IK    D+G+GFI  E       D+F H S V    L  L EGQ+V Y+  Q 
Sbjct: 3  QGKIKRIVSDRGFGFIEGERG-----DLFFHYSEVQGVTLEELQEGQMVEYEVGQG 53


>gi|289580237|ref|YP_003478703.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
 gi|289529790|gb|ADD04141.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
          Length = 64

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++ ++N   GYGFI  E   ++ DDVF H   V      +L EGQ + +D  Q D
Sbjct: 3  KGTVDFFNDTGGYGFIETE---DADDDVFFHMEDVGGP---DLEEGQELEFDIEQAD 53


>gi|224048372|ref|XP_002196412.1| PREDICTED: lin-28 homolog B [Taeniopygia guttata]
          Length = 258

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  ES  DVF+H+S +   G  +L EG+ V + +
Sbjct: 40 GHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTF 95


>gi|170749143|ref|YP_001755403.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium radiotolerans JCM 2831]
 gi|170655665|gb|ACB24720.1| cold-shock DNA-binding domain protein [Methylobacterium
          radiotolerans JCM 2831]
          Length = 201

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G IKW++  KG+GFI P+   +   D+ LH + +   G    +EG  +  + V+ 
Sbjct: 38 GRIKWFDVSKGFGFIVPD---DGAPDILLHVTCLRRDGYQAASEGARIVVEAVER 89



 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  +G+GF+T    T    D+F+H   +   G+  L  G+ V   Y   D +    
Sbjct: 132 VKWFNRLRGFGFLTRGDGTP---DIFVHMETLRRYGIAELKPGESVLVRY--GDGSKGVM 186

Query: 67  AENLKLV 73
           A  ++L+
Sbjct: 187 AAEVRLI 193


>gi|126343688|ref|XP_001363729.1| PREDICTED: similar to Cold shock domain containing C2, RNA binding
           [Monodelphis domestica]
          Length = 154

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  TE   D+F+H S +   G +   EG  VTY       
Sbjct: 69  VFKGVCKQFSRSQGHGFITPENGTE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 123

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 124 KNQKFQAVEVVL 135


>gi|322368663|ref|ZP_08043230.1| cold shock protein [Haladaptatus paucihalophilus DX253]
 gi|320551394|gb|EFW93041.1| cold shock protein [Haladaptatus paucihalophilus DX253]
          Length = 64

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++ ++N   GYGFI    + ++ DDVF H   V      +L EGQ V +D  Q D
Sbjct: 3  KGTVTFFNDTGGYGFIE---TDDADDDVFFHMEDVGGP---DLEEGQEVEFDIEQAD 53


>gi|327284528|ref|XP_003226989.1| PREDICTED: protein lin-28 homolog B-like [Anolis carolinensis]
          Length = 320

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           G  KW+N   G+GFI+    EGS  +S  DVF+H+S +   G  +L EG+ V + +
Sbjct: 102 GHCKWFNVRMGFGFISMLHREGSPLDSPVDVFVHQSKLYMEGFRSLKEGEPVEFTF 157


>gi|221116635|ref|XP_002154000.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 719

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+
Sbjct: 449 GTVKWFNVRNGYGFI---HRNDTQNDVFVHQTAIVKNNPNKYLRSVGDGETVEFDVVE 503


>gi|149725937|ref|XP_001492855.1| PREDICTED: similar to Calcium regulated heat stable protein 1,
           24kDa [Equus caballus]
          Length = 147

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 109


>gi|332266403|ref|XP_003282197.1| PREDICTED: y-box-binding protein 2-like [Nomascus leucogenys]
          Length = 430

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 169 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 225


>gi|327402091|ref|YP_004342929.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
           16823]
 gi|327317599|gb|AEA42091.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
           16823]
          Length = 148

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 7/54 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           + +G++ +YN  KGYGFI     + SGD +F+H + +       +TEG  V+++
Sbjct: 86  IRQGTVTFYNDSKGYGFIK---DSTSGDSIFVHANQLTET----ITEGNRVSFE 132


>gi|296224861|ref|XP_002758248.1| PREDICTED: calcium-regulated heat stable protein 1-like [Callithrix
           jacchus]
          Length = 147

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY   
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMC 112


>gi|254000354|ref|YP_003052417.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. SIP3-4]
 gi|253987033|gb|ACT51890.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4]
          Length = 201

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQN 59
          M ++G I  +   +G+GFITP G    GD VFLH SA +        EG +LVTY+    
Sbjct: 1  MRYQGRITTWKDKQGFGFITPNG---GGDPVFLHISAFSHRK--RRPEGDELVTYERTL- 54

Query: 60 DANGKYSAENLKLV 73
          DA G+  A  +  V
Sbjct: 55 DAKGRPHALKVAFV 68


>gi|255078512|ref|XP_002502836.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299]
 gi|226518102|gb|ACO64094.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299]
          Length = 305

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           ++G + W+N  KG+GF+T +       DVF+H+S + + G  +L + + V ++ ++   +
Sbjct: 44  YKGVVNWFNVAKGFGFVTRDDGV---GDVFVHQSDIYAEGFRSLRDQEPVEFE-LEPMGD 99

Query: 63  GKYSA 67
           G+Y A
Sbjct: 100 GRYKA 104


>gi|4583307|gb|AAD25021.1|AF115345_1 calcium-regulated heat stable protein CRHSP-24 [Homo sapiens]
          Length = 147

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 109


>gi|149409245|ref|XP_001506560.1| PREDICTED: similar to transforming, acidic coiled-coil containing
           protein 3 [Ornithorhynchus anatinus]
          Length = 154

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY   
Sbjct: 69  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMC 119


>gi|218676684|ref|YP_002395503.1| hypothetical protein VS_II0921 [Vibrio splendidus LGP32]
 gi|218324952|emb|CAV26780.1| Hypothetical protein VS_II0921 [Vibrio splendidus LGP32]
          Length = 81

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          RG I W++ + G+GF  P    + GD DV +H S +   G  NL EGQ V  +  +    
Sbjct: 5  RGYITWFHLENGFGFAKP----DHGDIDVLIHISIIEFDGEINLEEGQRVYLELEEVKDK 60

Query: 63 GKYSAENLKLVP 74
            ++A  +K++P
Sbjct: 61 PHWNA--VKVLP 70


>gi|301768643|ref|XP_002919738.1| PREDICTED: calcium-regulated heat stable protein 1-like [Ailuropoda
           melanoleuca]
 gi|281342656|gb|EFB18240.1| hypothetical protein PANDA_008393 [Ailuropoda melanoleuca]
          Length = 147

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 109


>gi|224095946|ref|XP_002188961.1| PREDICTED: Rous sarcoma virus transcription enhancer factor II
           [Taeniopygia guttata]
          Length = 420

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 213 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 269


>gi|109715854|ref|NP_001035941.1| calcium-regulated heat stable protein 1 [Homo sapiens]
 gi|109715858|ref|NP_055131.2| calcium-regulated heat stable protein 1 [Homo sapiens]
 gi|114660916|ref|XP_001137922.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 6 [Pan
           troglodytes]
 gi|114660918|ref|XP_001138007.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 7 [Pan
           troglodytes]
 gi|114660920|ref|XP_001137407.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 1 [Pan
           troglodytes]
 gi|114660922|ref|XP_001137655.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3 [Pan
           troglodytes]
 gi|114660924|ref|XP_001137742.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 4 [Pan
           troglodytes]
 gi|114660926|ref|XP_523291.2| PREDICTED: calcium-regulated heat stable protein 1 isoform 9 [Pan
           troglodytes]
 gi|114660928|ref|XP_001137575.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2 [Pan
           troglodytes]
 gi|114660930|ref|XP_001138086.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 8 [Pan
           troglodytes]
 gi|114660932|ref|XP_001137823.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 5 [Pan
           troglodytes]
 gi|332845244|ref|XP_003315008.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
           troglodytes]
 gi|332845246|ref|XP_003315009.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
           troglodytes]
 gi|332845248|ref|XP_003315010.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
           troglodytes]
 gi|332845251|ref|XP_003315011.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
           troglodytes]
 gi|41016932|sp|Q9Y2V2|CHSP1_HUMAN RecName: Full=Calcium-regulated heat stable protein 1; AltName:
           Full=Calcium-regulated heat-stable protein of 24 kDa;
           Short=CRHSP-24
 gi|315364426|pdb|3AQQ|A Chain A, Crystal Structure Of Human Crhsp-24
 gi|315364427|pdb|3AQQ|C Chain C, Crystal Structure Of Human Crhsp-24
 gi|315364428|pdb|3AQQ|B Chain B, Crystal Structure Of Human Crhsp-24
 gi|315364429|pdb|3AQQ|D Chain D, Crystal Structure Of Human Crhsp-24
 gi|13097198|gb|AAH03366.1| Calcium regulated heat stable protein 1, 24kDa [Homo sapiens]
 gi|82568913|gb|AAI08284.1| Calcium regulated heat stable protein 1, 24kDa [Homo sapiens]
 gi|119605602|gb|EAW85196.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
           sapiens]
 gi|119605603|gb|EAW85197.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
           sapiens]
 gi|119605604|gb|EAW85198.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
           sapiens]
 gi|119605605|gb|EAW85199.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
           sapiens]
 gi|189053098|dbj|BAG34720.1| unnamed protein product [Homo sapiens]
 gi|190689713|gb|ACE86631.1| calcium regulated heat stable protein 1, 24kDa protein [synthetic
           construct]
 gi|190691077|gb|ACE87313.1| calcium regulated heat stable protein 1, 24kDa protein [synthetic
           construct]
 gi|307686115|dbj|BAJ20988.1| calcium regulated heat stable protein 1, 24kDa [synthetic
           construct]
          Length = 147

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY   
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMC 112


>gi|257386713|ref|YP_003176486.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
 gi|257169020|gb|ACV46779.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
          Length = 69

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++ ++N   GYGFI  E   ++ DDVF H   V      +L EGQ + +D  Q D
Sbjct: 9  GTVDFFNDTGGYGFIETE---DADDDVFFHMEDVGGP---DLEEGQEIEFDIEQAD 58


>gi|126335948|ref|XP_001376438.1| PREDICTED: similar to Nsep1 protein [Monodelphis domestica]
          Length = 290

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI  + + E   DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 19 GTVKWFNVRNGYGFINRDDTKE---DVFVHQTAIKKNNPRKYLRSVGDGEPVEFDVVEGE 75


>gi|109127552|ref|XP_001102514.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1
           [Macaca mulatta]
 gi|109127554|ref|XP_001102603.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2
           [Macaca mulatta]
 gi|109127556|ref|XP_001102694.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3
           [Macaca mulatta]
 gi|297283445|ref|XP_002802430.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta]
 gi|297283448|ref|XP_002802431.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta]
 gi|297283450|ref|XP_002802432.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta]
 gi|297283452|ref|XP_002802433.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta]
          Length = 147

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 109


>gi|119718152|ref|YP_925117.1| cold-shock DNA-binding protein family protein [Nocardioides sp.
          JS614]
 gi|119538813|gb|ABL83430.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614]
          Length = 131

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++ +KG+GF+    S E+G DV++ RS    AG  +L  G  V +   Q
Sbjct: 4  GKVKWFDAEKGFGFL----SQENGPDVYV-RSEALPAGTSSLKAGTRVEFGIAQ 52


>gi|22758142|ref|NP_690003.1| calcium-regulated heat stable protein 1 [Rattus norvegicus]
 gi|41016763|sp|Q9WU49|CHSP1_RAT RecName: Full=Calcium-regulated heat stable protein 1; AltName:
           Full=Calcium-regulated heat-stable protein of 24 kDa;
           Short=CRHSP-24
 gi|4583309|gb|AAD25022.1|AF115346_1 calcium-regulated heat stable protein CRHSP-24 [Rattus sp.]
 gi|49522734|gb|AAH71173.1| Calcium regulated heat stable protein 1 [Rattus norvegicus]
 gi|149042602|gb|EDL96239.1| calcium regulated heat stable protein 1, isoform CRA_a [Rattus
           norvegicus]
          Length = 147

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 109


>gi|296219544|ref|XP_002755926.1| PREDICTED: calcium-regulated heat stable protein 1-like [Callithrix
           jacchus]
          Length = 147

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY   
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMC 112


>gi|260663603|ref|ZP_05864492.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
 gi|260551829|gb|EEX24944.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
          Length = 70

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +IK Y+P KG+G+IT    T    DV+ HR A+       + +GQ V    VQ
Sbjct: 3  QATIKSYDPTKGWGYIT----TPQDGDVYFHRRAIEGRSRVPIQKGQAVEMVIVQ 53


>gi|289607243|emb|CBI60851.1| unnamed protein product [Sordaria macrospora]
          Length = 194

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG IKW++  +G+GF   + S  S  DV +H S +   G   L EG +V  +  +  + G
Sbjct: 34 RGVIKWFDVTRGFGFAVADDS--SLGDVLIHFSVLEPHGRRTLPEGAIVLCNAARR-SRG 90

Query: 64 KYSAENLKL 72
            + E L++
Sbjct: 91 MQAVEILEI 99



 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           S+KW+N  KGYGF+  +G      DVF+H   +   G+  +   Q +    V+
Sbjct: 131 SVKWFNRLKGYGFLVRDG---QAGDVFVHMETLRRGGIEEVEPDQRLVARIVE 180


>gi|256089122|ref|XP_002580665.1| cold shock domain protein A [Schistosoma mansoni]
 gi|238666264|emb|CAZ36904.1| cold shock domain protein A, putative [Schistosoma mansoni]
          Length = 175

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 3/36 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39
          RG +KW+N   GYGFIT    +++  D+F+H++A++
Sbjct: 19 RGVVKWFNVKAGYGFIT---RSDTSSDIFVHQTAIS 51


>gi|326677327|ref|XP_003200812.1| PREDICTED: protein lin-28 homolog B-like, partial [Danio rerio]
          Length = 211

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGS----TESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+   S     +   DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 114 GYCKWFNVRMGFGFISMTSSEGKPVDPPLDVFVHQSKLVMEGFRSLREGEQVEFTFKRS 172


>gi|13385290|ref|NP_080097.1| calcium-regulated heat stable protein 1 [Mus musculus]
 gi|309264712|ref|XP_003086339.1| PREDICTED: calcium-regulated heat stable protein 1-like [Mus
           musculus]
 gi|41016923|sp|Q9CR86|CHSP1_MOUSE RecName: Full=Calcium-regulated heat stable protein 1; AltName:
           Full=Calcium-regulated heat-stable protein of 24 kDa;
           Short=CRHSP-24
 gi|15778558|gb|AAL07470.1|AF414101_1 calcineurin substrate CRHSP-24 [Mus musculus]
 gi|12833143|dbj|BAB22408.1| unnamed protein product [Mus musculus]
 gi|12834885|dbj|BAB23077.1| unnamed protein product [Mus musculus]
 gi|12836086|dbj|BAB23495.1| unnamed protein product [Mus musculus]
 gi|15029979|gb|AAH11225.1| Calcium regulated heat stable protein 1 [Mus musculus]
 gi|56541222|gb|AAH86754.1| Calcium regulated heat stable protein 1 [Mus musculus]
 gi|74140430|dbj|BAE42365.1| unnamed protein product [Mus musculus]
 gi|74150621|dbj|BAE25463.1| unnamed protein product [Mus musculus]
 gi|74196650|dbj|BAE34427.1| unnamed protein product [Mus musculus]
 gi|74199323|dbj|BAE33186.1| unnamed protein product [Mus musculus]
 gi|74208059|dbj|BAE29139.1| unnamed protein product [Mus musculus]
 gi|74213308|dbj|BAE41777.1| unnamed protein product [Mus musculus]
 gi|74214291|dbj|BAE40388.1| unnamed protein product [Mus musculus]
 gi|74222561|dbj|BAE38151.1| unnamed protein product [Mus musculus]
 gi|148664880|gb|EDK97296.1| mCG123718 [Mus musculus]
 gi|148703087|gb|EDL35034.1| mCG1049436 [Mus musculus]
          Length = 148

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY
Sbjct: 63  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 110


>gi|74181788|dbj|BAE32601.1| unnamed protein product [Mus musculus]
          Length = 148

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY       
Sbjct: 63  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMCSIPP 117

Query: 61  ANGKYSAENLKL 72
            N K  A  L +
Sbjct: 118 KNEKLQAVELVI 129


>gi|227514815|ref|ZP_03944864.1| cold shock protein Csp [Lactobacillus fermentum ATCC 14931]
 gi|227086805|gb|EEI22117.1| cold shock protein Csp [Lactobacillus fermentum ATCC 14931]
          Length = 70

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +IK Y+P KG+G+IT    T    DV+ HR A+       + +GQ V    VQ
Sbjct: 3  QATIKSYDPTKGWGYIT----TPQDGDVYFHRRAIEGRSRVPIQKGQAVEMVIVQ 53


>gi|74213976|dbj|BAE29409.1| unnamed protein product [Mus musculus]
          Length = 148

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY
Sbjct: 63  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 110


>gi|127511419|ref|YP_001092616.1| cold-shock DNA-binding domain-containing protein [Shewanella
          loihica PV-4]
 gi|126636714|gb|ABO22357.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4]
          Length = 205

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG++  +N DKG+GFI P  +T +  DVF+H SA+       +   +++     Q+D 
Sbjct: 1  MERGTLVRWNDDKGFGFIKP--NTPNAQDVFIHISALKQMARKPVVGDEIIYQSQQQSDG 58

Query: 62 NGK 64
            K
Sbjct: 59 KIK 61


>gi|109898941|ref|YP_662196.1| cold-shock DNA-binding domain-containing protein
          [Pseudoalteromonas atlantica T6c]
 gi|109701222|gb|ABG41142.1| cold-shock DNA-binding domain protein [Pseudoalteromonas
          atlantica T6c]
          Length = 237

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +  +N DKG+GF+ P G    G+ VF+H  A          +G ++TY+ V+  
Sbjct: 1  MRFQGKVFNWNDDKGFGFVEPNG---GGERVFVHIKAFTPRSR-RPVDGDVITYELVRES 56

Query: 61 ANGKYSAENLKL 72
           N +  AEN++ 
Sbjct: 57 HN-RCKAENIQF 67


>gi|332240252|ref|XP_003269303.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 1
           [Nomascus leucogenys]
 gi|332240254|ref|XP_003269304.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 2
           [Nomascus leucogenys]
 gi|332240256|ref|XP_003269305.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 3
           [Nomascus leucogenys]
 gi|332240258|ref|XP_003269306.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 4
           [Nomascus leucogenys]
 gi|332240260|ref|XP_003269307.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 5
           [Nomascus leucogenys]
 gi|332240262|ref|XP_003269308.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 6
           [Nomascus leucogenys]
 gi|332240264|ref|XP_003269309.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 7
           [Nomascus leucogenys]
 gi|332240266|ref|XP_003269310.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 8
           [Nomascus leucogenys]
          Length = 147

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 109


>gi|291529654|emb|CBK95240.1| cold-shock DNA-binding protein family [Eubacterium rectale
          M104/1]
          Length = 66

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55
          G +KW++  KGYGF+T     E G D F+H SA+ S   F  L     VT+D
Sbjct: 3  GKVKWFSNRKGYGFVTG----EDGQDYFVHFSAIESDKSFKTLHTNADVTFD 50


>gi|76798540|ref|ZP_00780773.1| 'Cold-shock' DNA-binding domain, putative [Streptococcus
          agalactiae 18RS21]
 gi|76586104|gb|EAO62629.1| 'Cold-shock' DNA-binding domain, putative [Streptococcus
          agalactiae 18RS21]
          Length = 53

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 6/58 (10%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          +GFI    S+E+G DVF H S +   G   L EGQ VT+D +Q+   G   A N+ LV
Sbjct: 1  FGFI----SSETGTDVFAHFSEIKVDGFKTLEEGQKVTFD-IQDGQRGP-QATNINLV 52


>gi|295096004|emb|CBK85094.1| Cold shock proteins [Enterobacter cloacae subsp. cloacae NCTC
          9394]
          Length = 46

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G +KW+  DKG+GFI+P    +   DVF+H SA+
Sbjct: 7  GLVKWFKEDKGFGFISP---VDGSKDVFVHFSAL 37


>gi|329890044|ref|ZP_08268387.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845345|gb|EGF94909.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC
           11568]
          Length = 173

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           +KW+N  KGYGF+  +G      D+F+H   +   GL +L  G  V   + +
Sbjct: 111 VKWFNRTKGYGFVVRDGQA---GDIFVHVETLRRCGLDDLLPGDPVNVRFAE 159



 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G +KW++  KGYGFI P+    + + DV LH +++  AG     EG  +  +  + 
Sbjct: 11 GRVKWFDAGKGYGFIVPDQPDLTEERDVLLHVTSLRDAGHEMAGEGAAIVCECAKR 66


>gi|47563679|dbj|BAD20296.1| cold shock protein like [Pseudomonas fluorescens]
          Length = 37

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 4/34 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G++KW+N  KGYGFI      E G DVF+H  A+
Sbjct: 7  GNVKWFNDAKGYGFI----QREDGKDVFVHYRAI 36


>gi|61837945|ref|XP_606503.1| PREDICTED: cold shock domain protein A short-like [Bos taurus]
 gi|297493193|ref|XP_002700192.1| PREDICTED: cold shock domain protein A short-like [Bos taurus]
 gi|296470652|gb|DAA12767.1| cold shock domain protein A short-like [Bos taurus]
          Length = 323

 Score = 38.1 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQND 60
           G++ W+   KGYGFI+ + + E   DVF+H +A+          ++ +G++V +D VQ +
Sbjct: 70  GTVVWFKEKKGYGFISRQDTQE---DVFVHHTAITGKNPCTYRGSVDDGEMVEFDVVQGE 126


>gi|114051954|ref|NP_001039416.1| calcium-regulated heat stable protein 1 [Bos taurus]
 gi|84201642|gb|AAI11638.1| Calcium regulated heat stable protein 1, 24kDa [Bos taurus]
 gi|296473437|gb|DAA15552.1| calcium regulated heat stable protein 1, 24kDa [Bos taurus]
          Length = 147

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPMEGDEVTY 109


>gi|86132446|ref|ZP_01051040.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
 gi|85817007|gb|EAQ38191.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
          Length = 64

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 6/51 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G++K++N  KGYGFIT +   E+G D+F+H + +       + EG  V Y
Sbjct: 2  EGTVKFFNESKGYGFITND---ETGKDIFVHVTGLNGE---TINEGDKVEY 46


>gi|226371922|gb|ACO51586.1| Calcium-regulated heat stable protein 1 [Rana catesbeiana]
          Length = 150

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           V++G  K ++  KG+GFI PE   + G DVFLH S +   G +   EG  VT+
Sbjct: 65  VYKGVCKCFSRSKGHGFIIPE---DGGPDVFLHISDI--EGEYVPVEGDEVTF 112


>gi|184155059|ref|YP_001843399.1| putative cold shock protein [Lactobacillus fermentum IFO 3956]
 gi|183226403|dbj|BAG26919.1| putative cold shock protein [Lactobacillus fermentum IFO 3956]
          Length = 70

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +IK Y+P KG+G+IT    T    DV+ HR A+       + +GQ V    VQ
Sbjct: 3  QATIKSYDPTKGWGYIT----TPQDGDVYFHRRAIEGRSRVPIQKGQAVEMVIVQ 53


>gi|186471680|ref|YP_001862998.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184197989|gb|ACC75952.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 61

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          GF        SGDD+F H S V + G  +L EGQ V++D V+    GK +A
Sbjct: 7  GFWVHHTGRRSGDDLFAHFSEVQAQGFKSLQEGQRVSFD-VKQGPKGKQAA 56


>gi|310815595|ref|YP_003963559.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium
          vulgare Y25]
 gi|308754330|gb|ADO42259.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium
          vulgare Y25]
          Length = 176

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KWY+  KG+GFI  P+G +    D+ LH + +   GL ++ EG  +T   V     G
Sbjct: 14 GHVKWYDATKGFGFIVDPQGRS----DILLHANVLRRFGLNSVGEGIEITV-LVSRTPKG 68

Query: 64 KYSAENLKL 72
            + E L +
Sbjct: 69 AQAIEILAV 77


>gi|163753583|ref|ZP_02160706.1| cold shock protein, DNA-binding [Kordia algicida OT-1]
 gi|161325797|gb|EDP97123.1| cold shock protein, DNA-binding [Kordia algicida OT-1]
          Length = 64

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 25/32 (78%), Gaps = 3/32 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36
          G++K++N DKG+GFIT +   ++G D+F+H S
Sbjct: 3  GTVKFFNEDKGFGFITND---DTGKDIFVHVS 31


>gi|255025943|ref|ZP_05297929.1| major cold-shock protein [Listeria monocytogenes FSL J2-003]
          Length = 28

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 4/32 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFL 33
          +  G++KW+N +KG+GFI  EG    GDDVF+
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVEG----GDDVFV 28


>gi|146300393|ref|YP_001194984.1| cold-shock DNA-binding domain-containing protein [Flavobacterium
          johnsoniae UW101]
 gi|146154811|gb|ABQ05665.1| cold-shock DNA-binding protein family [Flavobacterium johnsoniae
          UW101]
          Length = 63

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 7/54 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G++K++N +KG+GFITP      G +VF+H S ++ +    + +   V YD
Sbjct: 1  MQEGTVKFFNEEKGFGFITP---NNGGAEVFVHASGLSES----IRQDDAVRYD 47


>gi|112982792|ref|NP_001036897.1| Y-box protein [Bombyx mori]
 gi|49532669|dbj|BAD26606.1| Y-box protein [Bombyx mori]
          Length = 259

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39
          G++KW+N   GYGFI      ++ +DVF+H++A+A
Sbjct: 40 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQTAIA 71


>gi|302876681|ref|YP_003845314.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307687356|ref|ZP_07629802.1| cold shock protein [Clostridium cellulovorans 743B]
 gi|302579538|gb|ADL53550.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans
          743B]
          Length = 69

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
          G +KW++ ++GYGFI    S   G D ++H S V       +L EG+ V YD V+ +
Sbjct: 6  GVVKWFDNERGYGFI----SGNEGMDAYVHHSQVKEKTHNKDLHEGESVKYDMVETN 58


>gi|61217666|sp|Q9Z2C8|YBOX2_MOUSE RecName: Full=Y-box-binding protein 2; AltName: Full=FRGY2 homolog;
           AltName: Full=Germ cell-specific Y-box-binding protein
 gi|4071321|gb|AAC98673.1| Y-box protein MSY2 [Mus musculus]
          Length = 360

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 7/64 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 98  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154

Query: 61  ANGK 64
              +
Sbjct: 155 KGAR 158


>gi|110598385|ref|ZP_01386658.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
 gi|110339994|gb|EAT58496.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
          Length = 85

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 5/41 (12%)

Query: 7  IKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNL 46
          +KW++  KGYGFI  P+G    G+D+F+H SA+ S   F +
Sbjct: 6  VKWFDGKKGYGFILNPDG----GEDIFVHFSAILSEQSFKV 42


>gi|4071323|gb|AAC98674.1| Y-box protein MSY2 isoform a [Mus musculus]
          Length = 282

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 7/64 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 20 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 76

Query: 61 ANGK 64
             +
Sbjct: 77 KGAR 80


>gi|152999199|ref|YP_001364880.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS185]
 gi|151363817|gb|ABS06817.1| putative cold-shock DNA-binding domain protein [Shewanella
          baltica OS185]
          Length = 217

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ RG +  +N +KG+GFI PE +  +  DVF+H S +       +    ++    VQND
Sbjct: 2  LMDRGVLVRWNDEKGFGFIQPEKN--AAQDVFIHISVLKKMARKPIVGDSILYQTEVQND 59

Query: 61 ANGK 64
             K
Sbjct: 60 GKRK 63


>gi|73959197|ref|XP_852743.1| PREDICTED: similar to calcium-regulated heat-stable protein (24kD)
           [Canis familiaris]
          Length = 224

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY   
Sbjct: 139 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMC 189


>gi|242000494|ref|XP_002434890.1| PIN domain-containing RNA-binding protein, putative [Ixodes
          scapularis]
 gi|215498220|gb|EEC07714.1| PIN domain-containing RNA-binding protein, putative [Ixodes
          scapularis]
          Length = 315

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
          G++KW+N   GYGFI    + E   D+F+H++A+        + ++ EG+ V +D V
Sbjct: 19 GTVKWFNVKNGYGFINRNDTRE---DIFVHQTAITRNNPQKIMRSVGEGETVEFDVV 72


>gi|107101389|ref|ZP_01365307.1| hypothetical protein PaerPA_01002426 [Pseudomonas aeruginosa
          PACS2]
          Length = 227

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          +WY+ DKG+GFI P+     G++VFLH SA    G     +G  V +     DA G+  A
Sbjct: 9  RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 61

Query: 68 ENLKL 72
          E  +L
Sbjct: 62 ERARL 66


>gi|194336044|ref|YP_002017838.1| cold-shock DNA-binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308521|gb|ACF43221.1| cold-shock DNA-binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 84

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 7  IKWYNPDKGYGF-ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
          +KW++  KGYGF + P+G    G+D+F+H SA+ S   F +   Q    D+  +      
Sbjct: 6  VKWFDGKKGYGFLLNPDG----GEDIFVHFSAIQSEQSFKVL-NQDAEVDFELDKTQKGL 60

Query: 66 SAENLKLV 73
           A+N++ V
Sbjct: 61 QAKNVREV 68


>gi|224095055|ref|XP_002197370.1| PREDICTED: similar to cold shock domain containing C2, RNA binding
           [Taeniopygia guttata]
          Length = 161

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           + +G  K ++  +G+GFITPE  TE   D+F+H S +   G +   EG  VTY       
Sbjct: 76  IFKGVCKQFSRSQGHGFITPENGTE---DIFVHVSDI--EGEYVPVEGDEVTYKVCPIPP 130

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 131 KNQKFQAVEVVL 142


>gi|254488265|ref|ZP_05101470.1| cold shock protein [Roseobacter sp. GAI101]
 gi|214045134|gb|EEB85772.1| cold shock protein [Roseobacter sp. GAI101]
          Length = 182

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +    +KW++  KG+GF    G +   DD+FLH   +  +GL +L  G+ +    +  + 
Sbjct: 103 IEPARVKWFDKSKGFGFANVFGRS---DDIFLHIEVLRQSGLSDLQPGEALALRVIMGE- 158

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 159 RGHMAAE 165



 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
          V  G +KW++P KG+GF+    S E G D+ LH + + + G  ++ +G
Sbjct: 10 VTTGLVKWFDPAKGFGFVV---SDEGGPDILLHVNVLRNYGQSSVADG 54


>gi|297626985|ref|YP_003688748.1| Cold shock protein [Propionibacterium freudenreichii subsp.
          shermanii CIRM-BIA1]
 gi|296922750|emb|CBL57328.1| Cold shock protein [Propionibacterium freudenreichii subsp.
          shermanii CIRM-BIA1]
          Length = 128

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G +++++PDKG+GFIT     + GD     R+ V   G+ ++  GQ V +  V
Sbjct: 4  GRVRFFDPDKGFGFIT----KDEGDGEVYFRANVLPDGVTSVKRGQRVEFGIV 52


>gi|56755411|gb|AAW25885.1| SJCHGC05173 protein [Schistosoma japonicum]
 gi|226470954|emb|CAX76910.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470956|emb|CAX76911.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470958|emb|CAX76912.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470960|emb|CAX76913.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470962|emb|CAX76914.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470964|emb|CAX76915.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470966|emb|CAX76916.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470968|emb|CAX76917.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226473230|emb|CAX71301.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226473232|emb|CAX71302.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226473234|emb|CAX71303.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226473236|emb|CAX71304.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226473238|emb|CAX71305.1| putative DNA-binding protein [Schistosoma japonicum]
          Length = 175

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 3/36 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39
          RG +KW+N   GYGFIT    +++  D+F+H++A++
Sbjct: 19 RGVVKWFNVKAGYGFIT---RSDTSSDIFVHQTAIS 51


>gi|311251533|ref|XP_003124655.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 1
           [Sus scrofa]
 gi|311251535|ref|XP_003124658.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 4
           [Sus scrofa]
 gi|311251537|ref|XP_003124656.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 2
           [Sus scrofa]
          Length = 146

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           +++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY
Sbjct: 61  IYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 108


>gi|260428547|ref|ZP_05782526.1| cold shock DNA-binding domain protein [Citreicella sp. SE45]
 gi|260423039|gb|EEX16290.1| cold shock DNA-binding domain protein [Citreicella sp. SE45]
          Length = 180

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G +KW++P KG+GF+    + E G D+ LH + + + G  ++ +G  +     + D
Sbjct: 17 GKVKWFDPVKGFGFVV---ADEGGPDILLHANVLRNFGQSSVADGARIEVAVQRTD 69



 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           +KW++  KG+GF    G +   DDVF+H   +  +GL +L  G+ +    +
Sbjct: 112 VKWFDKAKGFGFANVFGRS---DDVFIHIEVLRRSGLADLQPGEALAIRLI 159


>gi|268574654|ref|XP_002642306.1| C. briggsae CBR-CEY-4 protein [Caenorhabditis briggsae]
 gi|187025308|emb|CAP35775.1| CBR-CEY-4 protein [Caenorhabditis briggsae AF16]
          Length = 286

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KW++    YGF+  E + +  +D F+H++A++ +      L  L E + V +D V+
Sbjct: 90  KGYVKWFSVRGRYGFVAREKAADETEDFFVHQTAISKSSTIKYYLRTLEEDEPVVFDIVE 149


>gi|149203726|ref|ZP_01880695.1| cold shock DNA-binding domain protein [Roseovarius sp. TM1035]
 gi|149142843|gb|EDM30885.1| cold shock DNA-binding domain protein [Roseovarius sp. TM1035]
          Length = 177

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KG+GF+    + E G D+ LH + + + G  ++ +   V  D VQ    G
Sbjct: 12 KGRVKWFDPVKGFGFVI---ADEGGPDILLHPNVLRNFGQSSVADRAGVELD-VQQTERG 67

Query: 64 KYSA 67
          + + 
Sbjct: 68 RQAV 71



 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G  E   DVF+H   +  +GL ++  G+ +    V +   G+ +
Sbjct: 108 VKWFDKGKGFGFANTFGRDE---DVFVHIEVLRRSGLADVQPGEALAI-RVIDGKRGRMA 163

Query: 67  AE 68
            E
Sbjct: 164 TE 165


>gi|332293257|ref|YP_004431866.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332171343|gb|AEE20598.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 63

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 9/70 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KG+GFIT EG  +   D F+H S +       + EG  V +D    + N 
Sbjct: 3  KGTVKFFNDTKGFGFITEEGVEK---DHFVHISGLIDE----IREGDEVEFDL--KEGNK 53

Query: 64 KYSAENLKLV 73
            +A N++++
Sbjct: 54 GLNAVNVRVI 63


>gi|226475488|emb|CAX77797.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 214

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI  +   ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|224282740|ref|ZP_03646062.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171]
 gi|310287199|ref|YP_003938457.1| Cold shock protein [Bifidobacterium bifidum S17]
 gi|311064061|ref|YP_003970786.1| cold shock protein CspB [Bifidobacterium bifidum PRL2010]
 gi|313139899|ref|ZP_07802092.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171]
 gi|309251135|gb|ADO52883.1| Cold shock protein [Bifidobacterium bifidum S17]
 gi|310866380|gb|ADP35749.1| CspB Cold shock protein [Bifidobacterium bifidum PRL2010]
 gi|313132409|gb|EFR50026.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171]
          Length = 129

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G ++W++  KG+GFIT     + G+DVFL  +A+   G+  L +G  V +  +
Sbjct: 4  GRVRWFDAKKGFGFIT----NDEGEDVFLPAAALPD-GVTTLRKGARVEFSVI 51


>gi|126334673|ref|XP_001367062.1| PREDICTED: similar to Calcium regulated heat stable protein 1,
           24kDa [Monodelphis domestica]
          Length = 147

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           +++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY   
Sbjct: 62  IYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPMEGDEVTYKMC 112


>gi|149278548|ref|ZP_01884684.1| cold shock protein [Pedobacter sp. BAL39]
 gi|149230543|gb|EDM35926.1| cold shock protein [Pedobacter sp. BAL39]
          Length = 63

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 9/58 (15%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++K++N  KG+GFI P     +GD ++F+H S +      N+ E   V+YD  Q
Sbjct: 1  MQQGTVKFFNETKGFGFIVP----ANGDSEIFVHSSGLMD----NIRENDSVSYDVEQ 50


>gi|213983151|ref|NP_001135490.1| lin-28 homolog B [Xenopus (Silurana) tropicalis]
 gi|195539937|gb|AAI67886.1| Unknown (protein for MGC:135309) [Xenopus (Silurana) tropicalis]
          Length = 253

 Score = 37.7 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  E+  DVF+H+S +   G  +L EG+ V + +
Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTF 90


>gi|94732354|emb|CAK04626.1| novel protein (zgc:55584) [Danio rerio]
          Length = 179

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEG-STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++    EG   +S  DVF+H+S +   G  +L EG+ V + +
Sbjct: 30 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 85


>gi|260061051|ref|YP_003194131.1| cold shock protein [Robiginitalea biformata HTCC2501]
 gi|88785183|gb|EAR16352.1| cold shock protein [Robiginitalea biformata HTCC2501]
          Length = 64

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 6/50 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          G++K++N  KGYGFIT +   ++G D+F+H  A A  GL  L +G  V Y
Sbjct: 3  GTVKFFNESKGYGFITND---DTGRDIFVH--ATALDGLV-LNQGDKVEY 46


>gi|54024961|ref|YP_119203.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54016469|dbj|BAD57839.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 122

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           G++ W++ +KG+GFITP+  + +   VF+   A+ + G   L  G  V Y   +  A
Sbjct: 54  GTVAWFDAEKGFGFITPDDRSPA---VFVEFHAIEAVGYRTLVAGGPVVYRAEETKA 107


>gi|225719590|gb|ACO15641.1| Cold shock domain-containing protein C2 [Caligus clemensi]
          Length = 171

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
           +H G++K++   +G+GFITP  S     + F+H S +
Sbjct: 67  IHEGTVKYFCRSRGFGFITPNKSVNDNQEFFMHISDI 103


>gi|226475498|emb|CAX77802.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 217

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI  +   ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|110667350|ref|YP_657161.1| cold shock protein [Haloquadratum walsbyi DSM 16790]
 gi|109625097|emb|CAJ51516.1| probable cold shock protein [Haloquadratum walsbyi DSM 16790]
          Length = 98

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++ ++N   GYGFI+ E + E   DVF H   +      +L EGQ + ++ VQ D
Sbjct: 37 QGTVDFFNDTGGYGFISTEDADE---DVFFHMEDIGGP---DLEEGQDLEFEIVQAD 87


>gi|21673445|ref|NP_661510.1| cold shock-like protein CspG [Chlorobium tepidum TLS]
 gi|21646547|gb|AAM71852.1| cold shock-like protein CspG [Chlorobium tepidum TLS]
          Length = 97

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 6/54 (11%)

Query: 4  RGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYD 55
          +  +KW++  KGYGFI  P+G    G+D+F+H S++ S   F  L +   V YD
Sbjct: 3  KSKVKWFDGKKGYGFILNPDG----GEDIFVHFSSIISDQSFKVLNQDADVEYD 52


>gi|284035600|ref|YP_003385530.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
 gi|283814893|gb|ADB36731.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
          Length = 63

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          +  G++K++N  KG+GFI P+   + G+D+F+H S +
Sbjct: 1  MQTGTVKFFNETKGFGFIKPD---DGGEDIFVHASGL 34


>gi|91218197|ref|ZP_01255145.1| cold shock protein [Psychroflexus torquis ATCC 700755]
 gi|91183655|gb|EAS70050.1| cold shock protein [Psychroflexus torquis ATCC 700755]
          Length = 63

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFIT EG  +   D F+H S +       + EG  V +D    + 
Sbjct: 1  MNKGTVKFFNDTKGFGFITEEGVDK---DHFVHASGLIDE----IREGDEVEFDL--QEG 51

Query: 62 NGKYSAENLKLV 73
          N   +A N++++
Sbjct: 52 NKGLNAVNVRVL 63


>gi|83594791|ref|YP_428543.1| cold-shock DNA-binding protein family protein [Rhodospirillum
          rubrum ATCC 11170]
 gi|83577705|gb|ABC24256.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
          11170]
          Length = 210

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++KW+N  KG+GF+     ++   D FLH S +  AG   L EG  +  D
Sbjct: 8  TVKWFNATKGFGFVR---VSDGEPDAFLHISVLQRAGYSELPEGATIVCD 54



 Score = 37.4 bits (85), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           G +K+++ DKG+GF+ P+G    G DV++    +   G+  L +GQ V
Sbjct: 147 GVVKFFSADKGFGFVVPDG---GGKDVYVGSRTLQDCGVSVLEQGQRV 191


>gi|86141013|ref|ZP_01059572.1| cold shock protein [Leeuwenhoekiella blandensis MED217]
 gi|85832955|gb|EAQ51404.1| cold shock protein [Leeuwenhoekiella blandensis MED217]
          Length = 63

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 6/51 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +G++K++N  KGYGFIT +   ++G D+F+H + +       L EG  V Y
Sbjct: 2  KGTVKFFNESKGYGFITND---DTGKDIFVHATGLNGE---VLEEGDQVEY 46


>gi|256089138|ref|XP_002580673.1| Y box binding protein [Schistosoma mansoni]
 gi|238666272|emb|CAZ36912.1| Y box binding protein, putative [Schistosoma mansoni]
          Length = 231

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFIN---RQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|289581257|ref|YP_003479723.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
 gi|289530810|gb|ADD05161.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
          Length = 64

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++ ++N   GYGFI  E + E   DVF H   V      +L EGQ + +D  Q D
Sbjct: 3  KGTVAFFNDTGGYGFIETEDADE---DVFFHMEDVGGP---DLEEGQELEFDIEQAD 53


>gi|256089136|ref|XP_002580672.1| Y box binding protein [Schistosoma mansoni]
 gi|1477478|gb|AAC47760.1| Y-box binding protein [Schistosoma mansoni]
 gi|1477484|gb|AAC47761.1| Y-box binding protein homolog [Schistosoma mansoni]
 gi|238666271|emb|CAZ36911.1| Y box binding protein, putative [Schistosoma mansoni]
          Length = 217

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFIN---RQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|226475490|emb|CAX77798.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 217

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI  + ++    D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|226475506|emb|CAX77806.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 217

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI  + ++    D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|226474418|emb|CAX71695.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 217

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI  + ++    D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|226474412|emb|CAX71692.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226474414|emb|CAX71693.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226474416|emb|CAX71694.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226474420|emb|CAX71696.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226474426|emb|CAX71699.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226475492|emb|CAX77799.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226475494|emb|CAX77800.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226475496|emb|CAX77801.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226475500|emb|CAX77803.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226475508|emb|CAX77807.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226475510|emb|CAX77808.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 217

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI  + ++    D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|14150689|gb|AAK54601.1|AF373220_1 Y-box DNA-binding protein [Schistosoma japonicum]
 gi|14039811|gb|AAK53394.1| Y-box binding protein [Schistosoma japonicum]
          Length = 202

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI  + ++    D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|114570048|ref|YP_756728.1| cold-shock DNA-binding protein family protein [Maricaulis maris
          MCS10]
 gi|114340510|gb|ABI65790.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10]
          Length = 174

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+P +GYGFI    +++   D+ LH S +   G         +    VQ D  G+
Sbjct: 18 GRVKWYDPARGYGFID---ASDGEGDILLHASCLRRFGQGPALPNAKIVCKAVQGD-KGR 73

Query: 65 YSAENLKL 72
           + E +++
Sbjct: 74 QAVELVEM 81



 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  +GYGF+T +       DVFLH + +  AG  ++  G  +    V+    G  +
Sbjct: 110 VKWFDALRGYGFVTCDNVE---GDVFLHAATLRRAGFEDIQPGDRIEVRCVEG-PKGALA 165

Query: 67  AE 68
           AE
Sbjct: 166 AE 167


>gi|82654186|ref|NP_001026944.2| protein lin-28 homolog A [Gallus gallus]
 gi|116248185|sp|Q45KJ5|LN28A_CHICK RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
 gi|82622705|gb|AAZ38895.2| LIN28A [Gallus gallus]
          Length = 202

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFI--TPEGST--ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF+  T +G    +S  DVF+H+S +   G  +L EG+ V + +
Sbjct: 36 GICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 91


>gi|226475502|emb|CAX77804.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 217

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI  + ++    D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|6114756|emb|CAA62001.2| PIPPin protein [Rattus norvegicus]
          Length = 227

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 142 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 196

Query: 61  ANGKYSAENLKLV 73
            N K+ A  + L 
Sbjct: 197 KNQKFQAVEVVLT 209


>gi|154147690|ref|NP_001093718.1| cold shock domain containing C2, RNA binding [Xenopus (Silurana)
           tropicalis]
 gi|134025813|gb|AAI35982.1| csdc2 protein [Xenopus (Silurana) tropicalis]
          Length = 151

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           +++G  K ++  +G+GFITPE  TE   D+F+H S +   G +   EG  VT+       
Sbjct: 66  IYKGVCKQFSRSQGHGFITPENGTE---DIFVHISDI--EGEYVPVEGDEVTFKMCPIPP 120

Query: 61  ANGKYSAENLKLV 73
            N K+ A  + L 
Sbjct: 121 KNQKFQAVEVILT 133


>gi|311251531|ref|XP_003124657.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 3
           [Sus scrofa]
          Length = 183

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           +++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY   
Sbjct: 98  IYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMC 148


>gi|326936337|ref|XP_003214212.1| PREDICTED: protein lin-28 homolog A-like, partial [Meleagris
          gallopavo]
          Length = 191

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFI--TPEG--STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G  KW+N   G+GF+  T +G  + +S  DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 25 GICKWFNVRMGFGFLSMTAKGGATLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKS 83


>gi|226475504|emb|CAX77805.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 203

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFIN---RQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|226474424|emb|CAX71698.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 203

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFIN---RQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|169235137|ref|YP_001688337.1| cold shock protein [Halobacterium salinarum R1]
 gi|167726203|emb|CAP12980.1| putative cold shock protein [Halobacterium salinarum R1]
          Length = 64

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G + ++N   GYGFI  E + E   DVF H   V      +L EGQ V +D  Q D
Sbjct: 4  GEVDFFNDTGGYGFIETEDADE---DVFFHMEDVGGP---DLEEGQEVEFDIEQAD 53


>gi|300022575|ref|YP_003755186.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524396|gb|ADJ22865.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 199

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
            R  +KW+N  +G+GF+T     E   D+F H   +   G   L  GQ+V   +
Sbjct: 124 ERAYVKWFNRVRGFGFLT---RGEGTPDIFCHMETLRRFGFTELRPGQIVQVRW 174



 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          G IKW++  KG+GFI P+       D+ LH + + + G     EG  V  + ++ 
Sbjct: 35 GMIKWFDASKGFGFIVPDNGLP---DILLHVTCLRAGGFQTAYEGARVHCEVLRR 86


>gi|297261183|ref|XP_001100705.2| PREDICTED: cold shock domain-containing protein C2-like [Macaca
          mulatta]
          Length = 116

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
          V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 31 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 85

Query: 61 ANGKYSAENLKL 72
           N K+ A  + L
Sbjct: 86 KNQKFQAVEVVL 97


>gi|299133814|ref|ZP_07027008.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 gi|298591650|gb|EFI51851.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
          Length = 240

 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           + R  +KW+N  +G+GF++     E   D+F+H   +   G+  L  GQ V   Y
Sbjct: 165 LERAQVKWFNRLRGFGFVS---CGEGTPDIFVHMETLRRYGMTELRPGQFVLVRY 216



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G IKW++  KGYGFI P+       D+ LH + +   G     EG  +  + VQ
Sbjct: 76  GVIKWFDASKGYGFIVPDNGWP---DILLHVTVLRRDGFQTAYEGARLVCECVQ 126


>gi|320094620|ref|ZP_08026384.1| cold-shock domain family protein [Actinomyces sp. oral taxon 178
          str. F0338]
 gi|319978456|gb|EFW10035.1| cold-shock domain family protein [Actinomyces sp. oral taxon 178
          str. F0338]
          Length = 125

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 4/38 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42
          G +++++P++G+GFIT     + G  VFLH SA+ + G
Sbjct: 4  GRVRFFDPERGFGFIT----GDDGSQVFLHSSALPAGG 37


>gi|292654672|ref|YP_003534569.1| cold shock protein [Haloferax volcanii DS2]
 gi|291371643|gb|ADE03870.1| cold shock protein [Haloferax volcanii DS2]
          Length = 64

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G + ++N   GYGFI+   + ++ DDVF H   V      +L EGQ V +D  Q
Sbjct: 3  KGKVDFFNDTGGYGFIS---TDDADDDVFFHMEDVGGP---DLEEGQEVEFDIEQ 51


>gi|255018523|ref|ZP_05290649.1| major cold-shock protein [Listeria monocytogenes FSL F2-515]
          Length = 27

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 4/31 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVF 32
          +  G++KW+N +KG+GFI  EG    GDDVF
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVEG----GDDVF 27


>gi|15789425|ref|NP_279249.1| cold shock protein [Halobacterium sp. NRC-1]
 gi|10579749|gb|AAG18729.1| cold shock protein [Halobacterium sp. NRC-1]
          Length = 74

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G + ++N   GYGFI  E + E   DVF H   V      +L EGQ V +D  Q D
Sbjct: 14 GEVDFFNDTGGYGFIETEDADE---DVFFHMEDVGGP---DLEEGQEVEFDIEQAD 63


>gi|124006449|ref|ZP_01691282.1| cold shock protein, putative DNA-binding protein [Microscilla
           marina ATCC 23134]
 gi|123987862|gb|EAY27542.1| cold shock protein, putative DNA-binding protein [Microscilla
           marina ATCC 23134]
          Length = 150

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 7/56 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           V +G + ++N DKGYGFI     +++ + +F+H + V    L ++ E  +VTY+ V
Sbjct: 87  VRKGIVTYFNDDKGYGFIK---DSKTKEKIFVHINNV----LEDIKENNVVTYEVV 135


>gi|114573575|ref|XP_001138838.1| PREDICTED: similar to transcription factor EF1(A) [Pan troglodytes]
          Length = 324

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ + + V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKKNPRKYLRSVGDRETVEFDVVEGE 117


>gi|332292095|ref|YP_004430704.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332170181|gb|AEE19436.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 63

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KGYGFIT +   ++G D+F+H + +       + EG  V  +YV+ +   
Sbjct: 2  EGTVKFFNESKGYGFITND---DTGKDIFVHVTGLNGE---TINEGDKV--EYVEEEGRK 53

Query: 64 KYSAENLKLV 73
            +A  ++++
Sbjct: 54 GLTAAQVRVL 63


>gi|149250840|ref|XP_001474936.1| PREDICTED: calcium-regulated heat stable protein 1-like [Mus
           musculus]
          Length = 148

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           V++G  K +   KG+GFITP    + G D+FLH S V   G +   EG  VTY
Sbjct: 63  VYKGVCKCFCRSKGHGFITP---GDGGPDIFLHISDV--EGEYVPVEGDEVTY 110


>gi|301347534|ref|ZP_07228275.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB056]
          Length = 60

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          N  KG+GFI     T+ G DVF H S + + G   L EGQ V +   Q
Sbjct: 1  NETKGFGFI----QTDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQ 44


>gi|82802829|gb|ABB92460.1| rcNSEP1 [Homo sapiens]
          Length = 319

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H +A         L ++ +G+ V +D V+ +
Sbjct: 57  GTVKWFNVRNGYGFIH---RNDTKEDVFVHHTAXKKNNPRKYLRSVGDGEXVEFDVVEGE 113

Query: 61  ANGK 64
              K
Sbjct: 114 KGAK 117


>gi|259479879|tpe|CBF70506.1| TPA: cold shock NA binding domain protein (JCVI) [Aspergillus
          nidulans FGSC A4]
          Length = 111

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G++KWYN  +G+GFIT    ++ G ++ L R ++ +     L EG  V+Y+ V
Sbjct: 49 GTVKWYNDAQGFGFIT----SDFGGELILRRQSI-TEHTQRLKEGMKVSYEAV 96


>gi|148284974|ref|YP_001249064.1| cold shock-like protein [Orientia tsutsugamushi str. Boryong]
 gi|189184097|ref|YP_001937882.1| cold shock protein [Orientia tsutsugamushi str. Ikeda]
 gi|146740413|emb|CAM80883.1| Cold shock-like protein [Orientia tsutsugamushi str. Boryong]
 gi|189180868|dbj|BAG40648.1| cold shock protein [Orientia tsutsugamushi str. Ikeda]
          Length = 73

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG---DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          G +KWYN  KGYGFI P    + G   +DVF+H +AV +AG+ +L EGQ V++       
Sbjct: 4  GIVKWYNSVKGYGFIQPSEKVKDGGKMEDVFVHATAVVAAGVADLKEGQRVSFQI--GSQ 61

Query: 62 NGKYSAENLKL 72
           G+  A NL L
Sbjct: 62 KGRIYATNLVL 72


>gi|118344436|ref|NP_001072039.1| Y-box protein 1/2/3 [Ciona intestinalis]
 gi|70571495|dbj|BAE06760.1| Y-box protein 1/2/3 [Ciona intestinalis]
          Length = 273

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 7/58 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          G +KW+N   GYGF+  + + E   DVF+H++A+        L ++ +G+ V +D V+
Sbjct: 28 GVVKWFNVRNGYGFVNRDDNKE---DVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVE 82


>gi|332638444|ref|ZP_08417307.1| Cold-shock protein [Weissella cibaria KACC 11862]
          Length = 73

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K +N D G+GFI  +G     +DVF+H SA+ +  + +L  G+ V    VQ     +
Sbjct: 6  GYVKTWNADNGFGFIELKGE----EDVFVHFSAIETPRVRDLEVGEPVKLVVVQGVRGPQ 61

Query: 65 YSAENLKL 72
           +A  +K+
Sbjct: 62 AAAVEVKV 69


>gi|197294834|ref|YP_001799375.1| cold shock protein [Candidatus Phytoplasma australiense]
 gi|171854161|emb|CAM12154.1| Cold shock protein, similar to Csp of Bacteriophage bIL312
          [Candidatus Phytoplasma australiense]
          Length = 77

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 4/38 (10%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
           +G+ +W++ DKGYGFI     +  G DVF+H S++ +
Sbjct: 6  QQGTCRWFSGDKGYGFIV----SAEGKDVFVHYSSIQT 39


>gi|39939157|ref|NP_950923.1| cold shock protein [Onion yellows phytoplasma OY-M]
 gi|39722266|dbj|BAD04756.1| cold shock protein [Onion yellows phytoplasma OY-M]
          Length = 74

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 4/38 (10%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
           +G+ +W++ DKGYGFI     +  G D+F+H S++ +
Sbjct: 6  QQGTCRWFSKDKGYGFIV----SVDGKDIFVHYSSIQT 39


>gi|328957375|ref|YP_004374761.1| cold shock protein CspB [Carnobacterium sp. 17-4]
 gi|328673699|gb|AEB29745.1| cold shock protein CspB [Carnobacterium sp. 17-4]
          Length = 68

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 37/58 (63%), Gaps = 5/58 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58
          + +G++KW++ +KGYGFI         +D+F+H + + +   F +L+ GQ V+++ ++
Sbjct: 1  MEQGTVKWFSNEKGYGFI----EYNETEDIFIHFTGIDNGEDFKSLSSGQHVSFEILE 54


>gi|323457293|gb|EGB13159.1| hypothetical protein AURANDRAFT_60508 [Aureococcus anophagefferens]
          Length = 670

 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           +IK + P+KG+GF T  G  +   DVF HRS+V S  +  L  G  VT   V  D  G+ 
Sbjct: 252 TIKSWRPEKGFGFCTVPGEAK---DVFFHRSSV-SGSVDALRAGAEVTVT-VGRDGRGRK 306

Query: 66  SAENLKL 72
             +++ L
Sbjct: 307 QCDSVAL 313


>gi|297709000|ref|XP_002831236.1| PREDICTED: cold shock domain-containing protein C2-like isoform 1
           [Pongo abelii]
          Length = 222

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 137 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 191

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 192 KNQKFQAVEVVL 203


>gi|226474410|emb|CAX71691.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 203

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI  +   ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|55379016|ref|YP_136866.1| cold shock protein [Haloarcula marismortui ATCC 43049]
 gi|55231741|gb|AAV47160.1| cold shock protein [Haloarcula marismortui ATCC 43049]
          Length = 64

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G++ ++N   GYGFI  E + E   DVF H   +      +L EGQ + +D  Q D
Sbjct: 3  KGTVDFFNDTGGYGFIDTEDADE---DVFFHMEDIGGP---DLEEGQELEFDIEQAD 53


>gi|85057350|ref|YP_456266.1| cold shock protein [Aster yellows witches'-broom phytoplasma
          AYWB]
 gi|84789455|gb|ABC65187.1| cold shock protein [Aster yellows witches'-broom phytoplasma
          AYWB]
          Length = 74

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60
           +G+ +W++ DKGYGFI     +  G D+F+H S++ +   G   L E   V +   + D
Sbjct: 6  EQGTCRWFSKDKGYGFII----SADGKDIFVHYSSIQTEVFGRKTLNENDKVEFTVKEGD 61


>gi|116621692|ref|YP_823848.1| cold-shock DNA-binding protein family protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224854|gb|ABJ83563.1| cold-shock DNA-binding protein family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 144

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS+  Y   KG+GF+ P+   + G D+F H S ++     +L  G  V Y+ +  D  GK
Sbjct: 71  GSVVTYFEAKGFGFLRPD---DGGRDIFFHVSRLSEGLATDLRPGTRVLYE-LGMDRTGK 126

Query: 65  YSAENLKL 72
            +A +L++
Sbjct: 127 MAASSLRI 134


>gi|313765415|gb|EFS36779.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL013PA1]
 gi|313772599|gb|EFS38565.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL074PA1]
 gi|313792938|gb|EFS41005.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL110PA1]
 gi|313806623|gb|EFS45130.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL087PA2]
 gi|313810820|gb|EFS48534.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL083PA1]
 gi|313814335|gb|EFS52049.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL025PA1]
 gi|313815182|gb|EFS52896.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL059PA1]
 gi|313817166|gb|EFS54880.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL046PA2]
 gi|313821769|gb|EFS59483.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL036PA1]
 gi|313824339|gb|EFS62053.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL036PA2]
 gi|313826698|gb|EFS64412.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL063PA1]
 gi|313828486|gb|EFS66200.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL063PA2]
 gi|313831939|gb|EFS69653.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL007PA1]
 gi|313834520|gb|EFS72234.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL056PA1]
 gi|313840249|gb|EFS77963.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL086PA1]
 gi|314915942|gb|EFS79773.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL005PA4]
 gi|314916971|gb|EFS80802.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL050PA1]
 gi|314921491|gb|EFS85322.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL050PA3]
 gi|314926877|gb|EFS90708.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL036PA3]
 gi|314931185|gb|EFS95016.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL067PA1]
 gi|314954756|gb|EFS99162.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL027PA1]
 gi|314958923|gb|EFT03025.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL002PA1]
 gi|314961218|gb|EFT05319.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL002PA2]
 gi|314964355|gb|EFT08455.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL082PA1]
 gi|314969454|gb|EFT13552.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL037PA1]
 gi|314974521|gb|EFT18616.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL053PA1]
 gi|314977286|gb|EFT21381.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL045PA1]
 gi|314980557|gb|EFT24651.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL072PA2]
 gi|314985613|gb|EFT29705.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL005PA1]
 gi|314987570|gb|EFT31661.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL005PA2]
 gi|314988965|gb|EFT33056.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL005PA3]
 gi|315078631|gb|EFT50662.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL053PA2]
 gi|315081909|gb|EFT53885.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL078PA1]
 gi|315082596|gb|EFT54572.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL027PA2]
 gi|315086307|gb|EFT58283.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL002PA3]
 gi|315087557|gb|EFT59533.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL072PA1]
 gi|315097592|gb|EFT69568.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL038PA1]
 gi|315099808|gb|EFT71784.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL059PA2]
 gi|315101884|gb|EFT73860.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL046PA1]
 gi|315106608|gb|EFT78584.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL030PA1]
 gi|315110397|gb|EFT82373.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL030PA2]
 gi|327331557|gb|EGE73296.1| cold-shock domain protein [Propionibacterium acnes HL096PA2]
 gi|327333540|gb|EGE75260.1| cold-shock domain protein [Propionibacterium acnes HL096PA3]
 gi|327445435|gb|EGE92089.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL013PA2]
 gi|327447049|gb|EGE93703.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL043PA1]
 gi|327449915|gb|EGE96569.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL043PA2]
 gi|327454759|gb|EGF01414.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL087PA3]
 gi|327455614|gb|EGF02269.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL083PA2]
 gi|327456893|gb|EGF03548.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL092PA1]
 gi|328755815|gb|EGF69431.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL087PA1]
 gi|328756595|gb|EGF70211.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL025PA2]
 gi|328758679|gb|EGF72295.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL020PA1]
 gi|328761686|gb|EGF75201.1| cold-shock domain protein [Propionibacterium acnes HL099PA1]
          Length = 135

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +++Y+  KG+GF+T +G    G DV+++ SA+  AG+  L  GQ V +  V+
Sbjct: 12 GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNTLKPGQKVDFGIVE 60


>gi|82242626|sp|Q8AVK2|LN28B_XENLA RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
 gi|27503403|gb|AAH42225.1| LOC373796 protein [Xenopus laevis]
          Length = 252

 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  E+  DVF+H+S +   G  +L EG+ V + +
Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDGFRSLKEGEPVEFTF 90


>gi|88803297|ref|ZP_01118823.1| cold shock protein [Polaribacter irgensii 23-P]
 gi|88780863|gb|EAR12042.1| cold shock protein [Polaribacter irgensii 23-P]
          Length = 63

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFIT EG+ E     F+H S +       + E   V +D    D 
Sbjct: 1  MNKGTVKFFNESKGFGFITEEGNNEEH---FVHVSGLVDE----IRENDEVEFDL--QDG 51

Query: 62 NGKYSAENLKLV 73
              +A N++++
Sbjct: 52 RKGLNAVNVRVI 63


>gi|119580846|gb|EAW60442.1| cold shock domain containing C2, RNA binding [Homo sapiens]
          Length = 222

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 137 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 191

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 192 KNQKFQAVEVVL 203


>gi|226474422|emb|CAX71697.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 203

 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI  +   ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 D 60
          D
Sbjct: 84 D 84


>gi|118344374|ref|NP_001072010.1| Y-box protein 1/2/3 [Ciona intestinalis]
 gi|70571490|dbj|BAE06759.1| Y-box protein 1/2/3 [Ciona intestinalis]
          Length = 320

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 7/58 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          G +KW+N   GYGF+  + + E   DVF+H++A+        L ++ +G+ V +D V+
Sbjct: 28 GVVKWFNVRNGYGFVNRDDNKE---DVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVE 82


>gi|83749695|ref|ZP_00946674.1| Cold shock protein [Ralstonia solanacearum UW551]
 gi|83723620|gb|EAP70819.1| Cold shock protein [Ralstonia solanacearum UW551]
          Length = 82

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 3/28 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVF 32
          G++KW+N  KG+GFITP+G    G D+F
Sbjct: 46 GTVKWFNETKGFGFITPDG---GGADLF 70


>gi|313802611|gb|EFS43833.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL110PA2]
          Length = 135

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +++Y+  KG+GF+T +G    G DV+++ SA+  AG+  L  GQ V +  V+
Sbjct: 12 GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNTLKPGQKVDFGIVE 60


>gi|300709511|ref|YP_003735325.1| cold shock protein [Halalkalicoccus jeotgali B3]
 gi|299123194|gb|ADJ13533.1| cold shock protein [Halalkalicoccus jeotgali B3]
          Length = 64

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G + ++N   GYGFI+   + ++ DDVF H   V      +L EGQ + +D  Q
Sbjct: 3  KGEVDFFNDTGGYGFIS---TDDADDDVFFHMEDVGGP---DLEEGQEIEFDIEQ 51


>gi|167045315|gb|ABZ09973.1| putative cold-shock DNA-binding domain protein [uncultured marine
          crenarchaeote HF4000_APKG9P22]
          Length = 64

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G++KW+N  KG+GFI  EG  +   D+F+H++ +
Sbjct: 4  GTVKWFNQSKGFGFIEREGEAK---DLFVHQTEL 34


>gi|148725317|emb|CAN88784.1| novel protein (zgc:55584) [Danio rerio]
          Length = 102

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEG-STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++    EG   +S  DVF+H+S +   G  +L EG+ V + +
Sbjct: 41 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 96


>gi|121934029|gb|AAI27713.1| LIN28B protein [Homo sapiens]
 gi|121934102|gb|AAI27714.1| LIN28B protein [Homo sapiens]
 gi|146424334|gb|AAI41961.1| LIN28B protein [Homo sapiens]
 gi|152061020|gb|AAI50539.1| LIN28B protein [Homo sapiens]
 gi|152061071|gb|AAI50538.1| LIN28B protein [Homo sapiens]
          Length = 227

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 9  GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 64


>gi|41055233|ref|NP_957385.1| protein lin-28 homolog A [Danio rerio]
 gi|82241857|sp|Q803L0|LN28A_DANRE RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
 gi|27882510|gb|AAH44433.1| Lin-28 homolog (C. elegans) [Danio rerio]
 gi|94732353|emb|CAK04625.1| novel protein (zgc:55584) [Danio rerio]
          Length = 202

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEG-STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++    EG   +S  DVF+H+S +   G  +L EG+ V + +
Sbjct: 36 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 91


>gi|12082718|gb|AAG48580.1| cold shock-like protein CspE [Brucella abortus]
          Length = 121

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G IKW++  KGYGFI P+    +  D+ LH +++   G     EG  +  +    D
Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARIVCEVRHGD 81


>gi|91794216|ref|YP_563867.1| hypothetical protein Sden_2865 [Shewanella denitrificans OS217]
 gi|91716218|gb|ABE56144.1| protein of unknown function DUF1294 [Shewanella denitrificans
          OS217]
          Length = 196

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +  ++ DKG+GFI P     +G +VFLH SA+ +A      E  ++TY  V  D
Sbjct: 1  MRVKGKLVRWDDDKGFGFIRPN---LTGPEVFLHISALRNASR-RPQEDDVITYALVA-D 55

Query: 61 ANGKYSAENLKL 72
            G+ +A N  L
Sbjct: 56 KQGRPTAANATL 67


>gi|23464629|ref|NP_695232.1| cold shock protein [Bifidobacterium longum NCC2705]
 gi|189438864|ref|YP_001953945.1| cold shock protein [Bifidobacterium longum DJO10A]
 gi|213691589|ref|YP_002322175.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|227546726|ref|ZP_03976775.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
          55813]
 gi|239620702|ref|ZP_04663733.1| CspA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296454610|ref|YP_003661753.1| putative cold-shock DNA-binding domain-containing protein
          [Bifidobacterium longum subsp. longum JDM301]
 gi|317481715|ref|ZP_07940747.1| cold-shock' DNA-binding domain-containing protein
          [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689677|ref|YP_004209411.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F]
 gi|322691638|ref|YP_004221208.1| cold shock protein [Bifidobacterium longum subsp. longum JCM
          1217]
 gi|23325186|gb|AAN23868.1| cold shock protein [Bifidobacterium longum NCC2705]
 gi|189427299|gb|ACD97447.1| Cold shock protein [Bifidobacterium longum DJO10A]
 gi|213523050|gb|ACJ51797.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|227212688|gb|EEI80569.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
          55813]
 gi|239516278|gb|EEQ56145.1| CspA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296184041|gb|ADH00923.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
          longum subsp. longum JDM301]
 gi|316916829|gb|EFV38219.1| cold-shock' DNA-binding domain-containing protein
          [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456494|dbj|BAJ67116.1| cold shock protein [Bifidobacterium longum subsp. longum JCM
          1217]
 gi|320457677|dbj|BAJ68298.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
          15697]
 gi|320461013|dbj|BAJ71633.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F]
          Length = 79

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 7/55 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTY 54
          +G++K++   KG+GFI P+   + G+DVF+H + +   G  N    L EG  V Y
Sbjct: 3  QGTVKFFLAKKGFGFIQPD---DGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEY 54


>gi|39935591|ref|NP_947867.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
           palustris CGA009]
 gi|39649444|emb|CAE27966.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009]
          Length = 235

 Score = 37.4 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G IKW++  KGYGF+ P+       DV LH + +   G     EG  +  + VQ
Sbjct: 71  GVIKWFDASKGYGFVVPDNGWP---DVLLHVTVLRRDGYQTAYEGARIVVECVQ 121



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V
Sbjct: 160 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYV 207


>gi|3121922|sp|Q44317|CSPA_AERSA RecName: Full=Major cold-shock protein
 gi|1402733|gb|AAC80231.1| major cold-shock protein [Aeromonas salmonicida]
          Length = 46

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +KG+GFI+P    +   DVF+H SA+ S     L EGQ V +   Q
Sbjct: 1  EKGFGFISP---ADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQ 43


>gi|327335065|gb|EGE76776.1| cold-shock domain protein [Propionibacterium acnes HL097PA1]
          Length = 135

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +++Y+  KG+GF+T +G    G DV+++ SA+  AG+  L  GQ V +  V+
Sbjct: 12 GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNTLKPGQKVDFGIVE 60


>gi|240849145|ref|NP_001155549.1| Y-box protein Ct-p40-like [Acyrthosiphon pisum]
 gi|239788387|dbj|BAH70879.1| ACYPI003867 [Acyrthosiphon pisum]
          Length = 305

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G +KW+N   GYGFI      ++ +D+F+H+SA+        + ++ +G+ V +D V+ +
Sbjct: 30 GVVKWFNVKSGYGFIN---RNDTKEDIFVHQSAIIKNNPKKIVRSVGDGETVEFDVVEGE 86


>gi|50841960|ref|YP_055187.1| cold shock protein [Propionibacterium acnes KPA171202]
 gi|289424366|ref|ZP_06426149.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          SK187]
 gi|289428406|ref|ZP_06430092.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          J165]
 gi|295130039|ref|YP_003580702.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          SK137]
 gi|50839562|gb|AAT82229.1| cold shock protein [Propionibacterium acnes KPA171202]
 gi|289155063|gb|EFD03745.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          SK187]
 gi|289158378|gb|EFD06595.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          J165]
 gi|291375123|gb|ADD98977.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          SK137]
 gi|332674879|gb|AEE71695.1| cold shock protein [Propionibacterium acnes 266]
          Length = 127

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +++Y+  KG+GF+T +G    G DV+++ SA+  AG+  L  GQ V +  V+
Sbjct: 4  GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNTLKPGQKVDFGIVE 52


>gi|192291180|ref|YP_001991785.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192284929|gb|ACF01310.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 235

 Score = 37.4 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           G IKW++  KGYGF+ P+       DV LH + +   G     EG  +  + VQ
Sbjct: 71  GVIKWFDASKGYGFVVPDNGWP---DVLLHVTVLRRDGYQTAYEGARIVVECVQ 121



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V
Sbjct: 160 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYV 207


>gi|149279957|ref|ZP_01886083.1| cold shock protein [Pedobacter sp. BAL39]
 gi|149229337|gb|EDM34730.1| cold shock protein [Pedobacter sp. BAL39]
          Length = 63

 Score = 37.4 bits (85), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 9/58 (15%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++K++N  KG+GFI P     +GD ++F+H S +    L ++ E   VTYD  Q
Sbjct: 1  MQEGTVKFFNETKGFGFIVP----ANGDSEIFVHSSGL----LDSIRENDSVTYDVEQ 50


>gi|88855706|ref|ZP_01130369.1| cold shock protein [marine actinobacterium PHSC20C1]
 gi|88815030|gb|EAR24889.1| cold shock protein [marine actinobacterium PHSC20C1]
          Length = 127

 Score = 37.4 bits (85), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 9/66 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K+Y+ +KG+GFI     ++ G +VFLH SA+  AG   +  G  + +      A+GK
Sbjct: 4  GKVKFYDDEKGFGFIM----SDEGQEVFLHASAL-PAGTTGVKAGTRLEFGI----ADGK 54

Query: 65 YSAENL 70
            A+ L
Sbjct: 55 KGAQAL 60


>gi|282853550|ref|ZP_06262887.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          J139]
 gi|282583003|gb|EFB88383.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          J139]
 gi|314922101|gb|EFS85932.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL001PA1]
 gi|314965185|gb|EFT09284.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL082PA2]
 gi|315093944|gb|EFT65920.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL060PA1]
 gi|315104625|gb|EFT76601.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL050PA2]
 gi|327329475|gb|EGE71235.1| cold-shock domain protein [Propionibacterium acnes HL103PA1]
          Length = 127

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +++Y+  KG+GF+T +G    G DV+++ SA+  AG+  L  GQ V +  V+
Sbjct: 4  GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNTLKPGQKVDFGIVE 52


>gi|149743340|ref|XP_001500375.1| PREDICTED: similar to RNA-binding protein pippin [Equus caballus]
          Length = 153

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 68  VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 122

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 123 KNQKFQAVEVVL 134


>gi|163786330|ref|ZP_02180778.1| cold shock protein [Flavobacteriales bacterium ALC-1]
 gi|159878190|gb|EDP72246.1| cold shock protein [Flavobacteriales bacterium ALC-1]
          Length = 84

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 9/69 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KG+GFIT EGS +   D F+H S +       + EG  V +D  +      
Sbjct: 25 GTVKFFNDSKGFGFITEEGSDK---DHFVHISGLVDE----IKEGDNVEFDLTEGKKG-- 75

Query: 65 YSAENLKLV 73
           +A N+K++
Sbjct: 76 LNAVNVKVI 84


>gi|56462192|gb|AAV91379.1| hypothetical protein 18 [Lonomia obliqua]
          Length = 254

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57
          G++KW+N   GYGFI      ++ +DVF+H++A+        + ++ +G++V +  V
Sbjct: 31 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEVVEFAVV 84


>gi|281485622|ref|NP_001164013.1| cold shock domain-containing protein C2 [Rattus norvegicus]
 gi|293348837|ref|XP_001077363.2| PREDICTED: cold shock domain containing C2, RNA binding [Rattus
           norvegicus]
 gi|293360735|ref|XP_345861.4| PREDICTED: cold shock domain-containing protein C2 [Rattus
           norvegicus]
 gi|32129826|sp|Q63430|CSDC2_RAT RecName: Full=Cold shock domain-containing protein C2; AltName:
           Full=RNA-binding protein PIPPin
 gi|149065816|gb|EDM15689.1| cold shock domain containing C2, RNA binding [Rattus norvegicus]
          Length = 154

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 69  VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 123

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 124 KNQKFQAVEVVL 135


>gi|291410316|ref|XP_002721452.1| PREDICTED: cold shock domain containing C2, RNA binding-like
           [Oryctolagus cuniculus]
          Length = 200

 Score = 37.0 bits (84), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 115 VFKGICKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 169

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 170 KNQKFQAVEVVL 181


>gi|301787827|ref|XP_002929327.1| PREDICTED: cold shock domain-containing protein C2-like [Ailuropoda
           melanoleuca]
 gi|281340937|gb|EFB16521.1| hypothetical protein PANDA_019484 [Ailuropoda melanoleuca]
          Length = 153

 Score = 37.0 bits (84), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 68  VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 122

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 123 KNQKFQAVEVVL 134


>gi|218892082|ref|YP_002440949.1| hypothetical protein PLES_33631 [Pseudomonas aeruginosa LESB58]
 gi|218772308|emb|CAW28090.1| hypothetical protein PLES_33631 [Pseudomonas aeruginosa LESB58]
          Length = 238

 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          +WY+ DKG+GFI P+     G++VFLH SA    G     +G  V +     DA G+  A
Sbjct: 20 RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 72

Query: 68 ENLKL 72
          E  +L
Sbjct: 73 ERARL 77


>gi|254240344|ref|ZP_04933666.1| hypothetical protein PA2G_00991 [Pseudomonas aeruginosa 2192]
 gi|126193722|gb|EAZ57785.1| hypothetical protein PA2G_00991 [Pseudomonas aeruginosa 2192]
          Length = 240

 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          +WY+ DKG+GFI P+     G++VFLH SA    G     +G  V +     DA G+  A
Sbjct: 22 RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 74

Query: 68 ENLKL 72
          E  +L
Sbjct: 75 ERARL 79


>gi|254235046|ref|ZP_04928369.1| hypothetical protein PACG_00926 [Pseudomonas aeruginosa C3719]
 gi|126166977|gb|EAZ52488.1| hypothetical protein PACG_00926 [Pseudomonas aeruginosa C3719]
          Length = 240

 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          +WY+ DKG+GFI P+     G++VFLH SA    G     +G  V +     DA G+  A
Sbjct: 22 RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 74

Query: 68 ENLKL 72
          E  +L
Sbjct: 75 ERARL 79


>gi|49082146|gb|AAT50473.1| PA1960 [synthetic construct]
          Length = 241

 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          +WY+ DKG+GFI P+     G++VFLH SA    G     +G  V +     DA G+  A
Sbjct: 22 RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 74

Query: 68 ENLKL 72
          E  +L
Sbjct: 75 ERARL 79


>gi|15597156|ref|NP_250650.1| hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1]
 gi|9947958|gb|AAG05348.1|AE004622_10 hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1]
          Length = 240

 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          +WY+ DKG+GFI P+     G++VFLH SA    G     +G  V +     DA G+  A
Sbjct: 22 RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 74

Query: 68 ENLKL 72
          E  +L
Sbjct: 75 ERARL 79


>gi|24307959|ref|NP_055275.1| cold shock domain-containing protein C2 [Homo sapiens]
 gi|297709002|ref|XP_002831237.1| PREDICTED: cold shock domain-containing protein C2-like isoform 2
           [Pongo abelii]
 gi|32129852|sp|Q9Y534|CSDC2_HUMAN RecName: Full=Cold shock domain-containing protein C2; AltName:
           Full=RNA-binding protein PIPPin
 gi|5304854|emb|CAB46024.1| cold shock domain containing C2, RNA binding [Homo sapiens]
 gi|5931606|dbj|BAA84704.1| RNA-binding protein PIPPin [Homo sapiens]
 gi|45501284|gb|AAH67113.1| CSDC2 protein [Homo sapiens]
 gi|47678445|emb|CAG30343.1| dJ347H13.2 [Homo sapiens]
 gi|57997216|emb|CAD39079.2| hypothetical protein [Homo sapiens]
 gi|109451154|emb|CAK54438.1| CSDC2 [synthetic construct]
 gi|109451732|emb|CAK54737.1| CSDC2 [synthetic construct]
 gi|190689775|gb|ACE86662.1| cold shock domain containing C2, RNA binding protein [synthetic
           construct]
 gi|190691143|gb|ACE87346.1| cold shock domain containing C2, RNA binding protein [synthetic
           construct]
 gi|306921241|dbj|BAJ17700.1| cold shock domain containing C2, RNA binding [synthetic construct]
          Length = 153

 Score = 37.0 bits (84), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 68  VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 122

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 123 KNQKFQAVEVVL 134


>gi|326332155|ref|ZP_08198437.1| cold-shock domain family protein [Nocardioidaceae bacterium
          Broad-1]
 gi|325950053|gb|EGD42111.1| cold-shock domain family protein [Nocardioidaceae bacterium
          Broad-1]
          Length = 132

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GF+    S + G DV++H  A+       L  G  V +   Q
Sbjct: 4  GKVKWFDATKGFGFL----SQDDGPDVYVHADALPEGAAKTLKAGTRVEFGIAQ 53


>gi|153873831|ref|ZP_02002279.1| cold-shock DNA-binding domain family protein [Beggiatoa sp. PS]
 gi|152069703|gb|EDN67719.1| cold-shock DNA-binding domain family protein [Beggiatoa sp. PS]
          Length = 225

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G I  +  DKG+GFI PE   + G+ +F H S++ +    +   G  V YD  + DA G
Sbjct: 2  KGKILQWKDDKGFGFILPE---KGGEKLFFHISSIKNQSR-HPQVGDAVLYDS-ERDAQG 56

Query: 64 KYSAENLKL 72
          +  A+++ L
Sbjct: 57 RLRAKSVVL 65


>gi|292654673|ref|YP_003534570.1| cold shock protein [Haloferax volcanii DS2]
 gi|17148925|gb|AAL35837.1|AF442116_1 conditioned medium-induced protein 9 [Haloferax volcanii]
 gi|291371479|gb|ADE03706.1| cold shock protein [Haloferax volcanii DS2]
          Length = 64

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G + ++N   GYGFI+   + ++ DDVF H   V      +L EGQ + +D  Q
Sbjct: 3  KGKVDFFNDTGGYGFIS---TDDADDDVFFHMEDVGGP---DLEEGQEIEFDIEQ 51


>gi|55378475|ref|YP_136325.1| cold shock protein [Haloarcula marismortui ATCC 43049]
 gi|55231200|gb|AAV46619.1| cold shock protein [Haloarcula marismortui ATCC 43049]
          Length = 64

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++ ++N   GYGFI  + + E   DVF H   V      +L EGQ V +D  Q D   +
Sbjct: 4  GTVDFFNDTGGYGFIETDDADE---DVFFHMEDVGGP---DLEEGQEVEFDIEQADKGPR 57

Query: 65 YSAENLK 71
            A+NL+
Sbjct: 58 --AKNLE 62


>gi|152986409|ref|YP_001348696.1| hypothetical protein PSPA7_3336 [Pseudomonas aeruginosa PA7]
 gi|150961567|gb|ABR83592.1| hypothetical protein PSPA7_3336 [Pseudomonas aeruginosa PA7]
          Length = 238

 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          +WY+ DKG+GFI P+     G+++FLH SA    G     +G  V +     DA G+  A
Sbjct: 20 RWYD-DKGFGFIQPKA---GGEEIFLHISAF--RGDRRPLQGDQVWF-LASQDARGRLRA 72

Query: 68 ENLKL 72
          E  +L
Sbjct: 73 ERARL 77


>gi|90075002|dbj|BAE87181.1| unnamed protein product [Macaca fascicularis]
          Length = 153

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 68  VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 122

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 123 KNQKFQAVEVVL 134


>gi|55379499|ref|YP_137349.1| cold shock protein [Haloarcula marismortui ATCC 43049]
 gi|55232224|gb|AAV47643.1| cold shock protein [Haloarcula marismortui ATCC 43049]
          Length = 64

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G + ++N   GYGFI+ E   ++ DDVF H   V      +L EG+ + +D  Q D
Sbjct: 4  GKVDFFNDTGGYGFISTE---DADDDVFFHMEDVGGP---DLEEGEEIEFDIEQAD 53


>gi|125838843|ref|XP_001340141.1| PREDICTED: protein lin-28 homolog A-like [Danio rerio]
          Length = 198

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFI---TPEG-STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF+   T +G   E+  DVF+H+S +   G  +L EG+ V + +
Sbjct: 33 GVCKWFNVRMGFGFLSMNTRDGVPLETPVDVFVHQSKLHMEGFRSLKEGESVEFTF 88


>gi|3121926|sp|Q48493|CSPA_KLEPN RecName: Full=Major cold shock protein
 gi|1402753|gb|AAC80243.1| major cold-shock protein [Klebsiella pneumoniae]
          Length = 46

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          KG+GFI+P+  ++   DVF+H SA+ S     L EGQ V++
Sbjct: 2  KGFGFISPKDGSK---DVFVHFSAIQSDSFKTLNEGQEVSF 39


>gi|323359215|ref|YP_004225611.1| cold shock proteins [Microbacterium testaceum StLB037]
 gi|323275586|dbj|BAJ75731.1| cold shock proteins [Microbacterium testaceum StLB037]
          Length = 127

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 4/36 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
          G +++Y+ +KG+GFI    +T+ G DVFLH +A+ +
Sbjct: 4  GKVRFYDEEKGFGFI----ATDDGQDVFLHATALPA 35


>gi|255965396|gb|ACU45003.1| cold shock protein [Pfiesteria piscicida]
          Length = 80

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++K YNP KG+GFI  EG      DVF+H   V   G      G +V+++  ++ 
Sbjct: 1  MSCQGTVKSYNPAKGWGFIDYEGQ-----DVFIH---VKDCGGAAPVAGDVVSFEVEKDP 52

Query: 61 ANG 63
            G
Sbjct: 53 VRG 55


>gi|311743491|ref|ZP_07717297.1| cold-shock domain family protein [Aeromicrobium marinum DSM
          15272]
 gi|311312621|gb|EFQ82532.1| cold-shock domain family protein [Aeromicrobium marinum DSM
          15272]
          Length = 131

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +KW++  KG+GF+    S++ G DV+LH  A+   G+  +  G  V +   Q
Sbjct: 4  GKVKWFDAGKGFGFL----SSDEGPDVYLHADALPE-GMDTIKPGTRVEFGIAQ 52


>gi|238063669|ref|ZP_04608378.1| DNA binding protein [Micromonospora sp. ATCC 39149]
 gi|237885480|gb|EEP74308.1| DNA binding protein [Micromonospora sp. ATCC 39149]
          Length = 150

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +  ++  +GYGFI P+G    GDDVF+H + V     + L  G  V Y+ V+N+   K
Sbjct: 4  GRVVRFDEVRGYGFIAPDG---GGDDVFVHANTV-DGDKWALGPGVPVEYEAVENERGPK 59


>gi|111025370|ref|YP_707790.1| cold shock protein CspA [Rhodococcus jostii RHA1]
 gi|110824349|gb|ABG99632.1| probable cold shock protein CspA [Rhodococcus jostii RHA1]
          Length = 79

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
          N +KG+GF  P+G       VF+H S +A  G   L EGQ + Y+  Q        AEN 
Sbjct: 25 NGEKGFGFTAPDGG------VFVHFSEIAGRGFKTLDEGQHMEYEVSQGQKG--VQAENA 76

Query: 71 KLV 73
          +  
Sbjct: 77 QTT 79


>gi|291457446|ref|ZP_06596836.1| conserved domain protein [Bifidobacterium breve DSM 20213]
 gi|51094320|gb|AAT95330.1| CspA [Bifidobacterium breve UCC2003]
 gi|159024131|gb|ABW87310.1| cold shock protein [Bifidobacterium breve]
 gi|291381281|gb|EFE88799.1| conserved domain protein [Bifidobacterium breve DSM 20213]
          Length = 79

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 7/55 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTY 54
          +G++K++   KG+GFI P+   + G+DVF+H + +   G  N    L EG  V Y
Sbjct: 3  QGTVKFFLAKKGFGFIQPD---DGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEY 54


>gi|32129843|sp|Q91YQ3|CSDC2_MOUSE RecName: Full=Cold shock domain-containing protein C2; AltName:
           Full=RNA-binding protein PIPPin
 gi|16359300|gb|AAH16109.1| Cold shock domain containing C2, RNA binding [Mus musculus]
 gi|148672599|gb|EDL04546.1| cold shock domain containing C2, RNA binding [Mus musculus]
          Length = 154

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 69  VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKICPIPP 123

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 124 KNQKFQAVEVVL 135


>gi|17555742|ref|NP_499393.1| Y-box family member (cey-4) [Caenorhabditis elegans]
 gi|3874932|emb|CAA97783.1| C. elegans protein Y39A1C.3, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|3880813|emb|CAA19509.1| C. elegans protein Y39A1C.3, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 294

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KW++    YGF+  +  T+  +D F+H++A+  +      L  L + + V +D V+
Sbjct: 90  KGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVE 149


>gi|326384174|ref|ZP_08205856.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
          NRRL B-59395]
 gi|326197039|gb|EGD54231.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
          NRRL B-59395]
          Length = 139

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+  KG+GF+    S   G+DV++  +A+  A +  L  GQ V +D     A G+
Sbjct: 4  GRVKWYDSAKGFGFL----SQTDGEDVYVRANAL-PADVPELKVGQKVEFDM----AAGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 RGPQALRV 62


>gi|296484122|gb|DAA26237.1| lin-28 homolog B-like [Bos taurus]
          Length = 255

 Score = 37.0 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 39 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94


>gi|294677870|ref|YP_003578485.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          capsulatus SB 1003]
 gi|294476690|gb|ADE86078.1| cold-shock DNA-binding domain protein [Rhodobacter capsulatus SB
          1003]
          Length = 177

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFI      E G D+ LH + + + G  ++ +   +    VQ    G 
Sbjct: 13 GRVKWFDAGKGFGFIL---DGEGGPDILLHANVLRNFGQSSVADNAGIRV-LVQATPRGA 68

Query: 65 YSAENLKLVPKSSN 78
           + E L++ P  ++
Sbjct: 69 QAVEVLEISPPETD 82



 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G  E   DVF+H   +  +G  +L  G+ V    ++    G+ +
Sbjct: 109 VKWFDKGKGFGFANVFGRPE---DVFIHVEVLRRSGFADLAPGEAVCLRVIEGR-RGRMA 164

Query: 67  AE 68
           A+
Sbjct: 165 AQ 166


>gi|269914112|ref|NP_663448.2| cold shock domain-containing protein C2 [Mus musculus]
 gi|26324880|dbj|BAC26194.1| unnamed protein product [Mus musculus]
 gi|74208901|dbj|BAE21201.1| unnamed protein product [Mus musculus]
          Length = 154

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 69  VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKICPIPP 123

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 124 KNQKFQAVEVVL 135


>gi|188582438|ref|YP_001925883.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
 gi|179345936|gb|ACB81348.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
          Length = 181

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G IKW++  KG+GFI P+   +   DV LH + +   G    +EG  +  +  + +
Sbjct: 18 GRIKWFDVSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEATRRE 70



 Score = 34.3 bits (77), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  +G+GF++    T    D+F+H   +   G+  L  G+ V   Y   D +    
Sbjct: 112 VKWFNRLRGFGFLSRGDGTP---DIFVHMETLRRYGIAELKPGEQVLVRY--GDGSKGAM 166

Query: 67  AENLKLV 73
           A  ++LV
Sbjct: 167 AAEVRLV 173


>gi|119776235|ref|YP_928975.1| cold-shock DNA-binding domain-containing protein [Shewanella
          amazonensis SB2B]
 gi|119768735|gb|ABM01306.1| cold-shock DNA-binding protein family [Shewanella amazonensis
          SB2B]
          Length = 186

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +  +N ++G+GFI PE   +  DDVF+H S++          G ++ +  +Q  +
Sbjct: 1  MQRGKLIRWNDERGFGFIKPE--QDGADDVFIHISSLKQMSRAPRI-GDIIVFQ-LQTSS 56

Query: 62 NGKYSA 67
          +GK  A
Sbjct: 57 DGKQQA 62


>gi|311255011|ref|XP_001928274.2| PREDICTED: cold shock domain-containing protein C2-like [Sus
           scrofa]
          Length = 153

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 68  VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 122

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 123 KNQKFQAVEVVL 134


>gi|300781744|ref|ZP_07091598.1| cold-shock domain family protein [Corynebacterium genitalium ATCC
          33030]
 gi|300533451|gb|EFK54512.1| cold-shock domain family protein [Corynebacterium genitalium ATCC
          33030]
          Length = 127

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KG+GF++  G     +DV++ ++ V   G+ +L  GQ + +D+    A G+
Sbjct: 4  GKVKWFDAEKGFGFVSNPGD----EDVYVGKN-VLPDGVEDLHPGQRIEFDF----AAGR 54

Query: 65 YSAENLKL 72
             + L++
Sbjct: 55 RGPQALRV 62


>gi|3821925|gb|AAC69704.1| major cold shock protein [Streptococcus thermophilus]
          Length = 50

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          KG+GFIT    +E G D+F H S++ S G  +L E Q V +D
Sbjct: 1  KGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFD 38


>gi|332521006|ref|ZP_08397466.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
 gi|332043536|gb|EGI79732.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
          Length = 63

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KG+GFIT EG  +   D F+H + +       + EG  V +D +Q    G
Sbjct: 3  KGTVKFFNDTKGFGFITEEGVDK---DHFVHVTGIID----EIREGDDVEFD-LQEGKKG 54

Query: 64 KYSAENLKLV 73
            +A N+K++
Sbjct: 55 -LNAVNVKVI 63


>gi|307823226|ref|ZP_07653456.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307736001|gb|EFO06848.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 190

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD-YVQND 60
          + +G +  +N DKG+GFI PE      ++VF+H SA+ +     +  G ++ Y  +V ND
Sbjct: 4  IFKGKLNRWNDDKGFGFIIPENGN---NEVFIHISALKNMSRRPVV-GDVILYQLHVGND 59

Query: 61 ANGKYSAENLKL 72
            GK  A N K+
Sbjct: 60 --GKNKAINAKI 69


>gi|119897463|ref|YP_932676.1| hypothetical protein azo1172 [Azoarcus sp. BH72]
 gi|119669876|emb|CAL93789.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 51

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39
          M H+G I  +  DKG+GFITP      G+ VF+H SA A
Sbjct: 1  MRHQGHISSWKDDKGFGFITP---AAGGEKVFVHISAFA 36


>gi|323454256|gb|EGB10126.1| hypothetical protein AURANDRAFT_62693 [Aureococcus anophagefferens]
          Length = 137

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           H G ++WY   K YGFI  +G+  S  D+F+H S +       L  G  V+  +V  +  
Sbjct: 39  HTGVVRWYTEKKHYGFIESKGA--SATDLFVHSSELEE----PLRAGDTVS--FVIGERR 90

Query: 63  GKYSAENLKLVPKS 76
           G+ +A  +++V ++
Sbjct: 91  GRSAATKVEVVERA 104


>gi|289581096|ref|YP_003479562.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
 gi|289530649|gb|ADD05000.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
          Length = 64

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++ ++N   GYGFI  E   ++ DDVF H   V      +LTEG  + +D  Q
Sbjct: 4  GTVDFFNDTGGYGFIETE---DADDDVFFHMEDVGGE---DLTEGTEIEFDIEQ 51


>gi|116003971|ref|NP_001070345.1| cold shock domain-containing protein C2 [Bos taurus]
 gi|115305132|gb|AAI23466.1| Cold shock domain containing C2, RNA binding [Bos taurus]
 gi|296486964|gb|DAA29077.1| RNA-binding protein pippin [Bos taurus]
          Length = 153

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY       
Sbjct: 68  VFKGICKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKVCPIPP 122

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 123 KNQKFQAVEVVL 134


>gi|47123238|gb|AAH70000.1| Y box binding protein 1 [Danio rerio]
          Length = 310

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +  V+ +
Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFAVVEGE 97


>gi|55379017|ref|YP_136867.1| cold shock protein [Haloarcula marismortui ATCC 43049]
 gi|55231742|gb|AAV47161.1| cold shock protein [Haloarcula marismortui ATCC 43049]
          Length = 64

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G++ ++N   GYGFI  + + E   DVF H   V      +L EGQ V +D  Q D
Sbjct: 3  EGTVDFFNDTGGYGFIETDDADE---DVFFHMEDVGGP---DLEEGQEVEFDIEQAD 53


>gi|312886814|ref|ZP_07746420.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
          DSM 18603]
 gi|311300641|gb|EFQ77704.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
          DSM 18603]
          Length = 65

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 4/30 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KGYGFI     T+ G D+F+H
Sbjct: 4  GKVKWFNTQKGYGFIV----TDDGKDLFVH 29


>gi|239994473|ref|ZP_04714997.1| integral membrane protein [Alteromonas macleodii ATCC 27126]
          Length = 165

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G I+ ++  KGYGF+ P G    G   F H  A           G ++ Y+ V+ D
Sbjct: 1  MKYQGRIQQWDDAKGYGFVEPNG---GGTRAFTHIKAFKQRSR-RPVNGDIIVYE-VEQD 55

Query: 61 ANGKYSAENLKLV 73
           NG + A N+ L+
Sbjct: 56 RNGNHRACNISLL 68


>gi|330893719|gb|EGH26380.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          mori str. 301020]
          Length = 48

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 26 ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +SGDD+F+H  A+ S G  +L EGQ VT+  VQ
Sbjct: 2  QSGDDLFVHFKAIESDGFKSLKEGQKVTFVAVQ 34


>gi|324518130|gb|ADY47012.1| Y-box-binding protein 2-B [Ascaris suum]
          Length = 323

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 7/59 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           G +KWY+    YGFI  +   +  +DVF+H++A+A +      L  L +G+ V +D V+
Sbjct: 49  GKVKWYSVRYHYGFIARD--DDRANDVFVHQTAIAKSRIVKYYLRTLGDGEEVVFDIVE 105


>gi|256828357|ref|YP_003157085.1| cold-shock DNA-binding domain-containing protein
          [Desulfomicrobium baculatum DSM 4028]
 gi|256577533|gb|ACU88669.1| cold-shock DNA-binding domain protein [Desulfomicrobium baculatum
          DSM 4028]
          Length = 168

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G I  +  D+G+GFITP G    G  VF+H SA+          G++VTY+ V N 
Sbjct: 1  MRFHGEISEWRDDRGFGFITPTG---GGTRVFVHISALQKGR--RPRAGEMVTYE-VGNS 54

Query: 61 ANGKYSAENLKLV 73
           +    A N+  V
Sbjct: 55 GDKGPRALNVNFV 67


>gi|50955352|ref|YP_062640.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951834|gb|AAT89535.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 126

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 10/66 (15%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K+Y+ +KG+GFI    S++ G +VFLH SA+ +  +  +  G  + +      A+GK
Sbjct: 4  GKVKFYDDEKGFGFI----SSDDGQEVFLHASALLAGAV--VKAGSRLEFGI----ADGK 53

Query: 65 YSAENL 70
            A+ L
Sbjct: 54 RGAQAL 59


>gi|24372324|ref|NP_716366.1| cold shock domain-contain protein [Shewanella oneidensis MR-1]
 gi|24346266|gb|AAN53811.1|AE015518_8 cold shock domain family protein [Shewanella oneidensis MR-1]
          Length = 203

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          ++ RG +  +N +KG+GFI PE S     DVF+H SA+
Sbjct: 2  LMDRGVLVRWNEEKGFGFIQPEQS--GARDVFIHISAL 37


>gi|149521716|ref|XP_001517644.1| PREDICTED: similar to LD37574p, partial [Ornithorhynchus
          anatinus]
          Length = 281

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
          G +KW+N   GYGFI      +  +DVF+H+SA+          ++ EG++V +D V
Sbjct: 38 GVVKWFNVRHGYGFIC---RIDMQEDVFIHQSAIVRNNPRKCQRSVGEGEVVQFDLV 91


>gi|313835454|gb|EFS73168.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL037PA2]
 gi|314928529|gb|EFS92360.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL044PA1]
 gi|314970448|gb|EFT14546.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL037PA3]
          Length = 135

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +++Y+  KG+GF+T +G    G DV+++ SA+  AG+  L  GQ V +  V+
Sbjct: 12 GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNALKPGQKVDFGIVE 60


>gi|300864970|ref|ZP_07109802.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337026|emb|CBN54952.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 187

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          IKW N D+G+GFI P   +  G +VFLH SAV + G      G  + Y   +   +GK+ 
Sbjct: 11 IKW-NDDRGFGFIKP---SAGGREVFLHISAVKTKGR-RPKIGDTIFYKLTRG-TDGKFC 64

Query: 67 AENLKL 72
          A +  +
Sbjct: 65 ASDASI 70


>gi|297518568|ref|ZP_06936954.1| cold shock protein CspE [Escherichia coli OP50]
          Length = 31

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 23/30 (76%), Gaps = 3/30 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFL 33
          +G++KW+N  KG+GFITPE  ++   DVF+
Sbjct: 5  KGNVKWFNESKGFGFITPEDGSK---DVFV 31


>gi|162985|gb|AAA21677.1| transcription factor EF1(A) [Bos taurus]
          Length = 110

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G++KW+N   GYGFI      ++ +DVF+H++A+
Sbjct: 61 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAI 91


>gi|300119946|gb|ADJ67998.1| Y-box protein [Samia ricini]
          Length = 264

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G++KW+N   GYGFI      ++ +DVF+H++A+
Sbjct: 39 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQTAI 69


>gi|313159124|gb|EFR58499.1| cold-shock DNA-binding domain protein [Alistipes sp. HGB5]
          Length = 145

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           RG ++ +N DKGYGFI    STE     F H S   +    ++ EG LVT++
Sbjct: 84  RGRVEHFNTDKGYGFIKDLDSTEK---YFFHISNAPA----DIAEGALVTFE 128


>gi|300176002|emb|CBK22219.2| unnamed protein product [Blastocystis hominis]
          Length = 126

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-------LFNLTEGQLVTYDY 56
          +G +KWY+   GYGFI+     E+  D F+H++ + S         LFN  E +    D 
Sbjct: 22 KGVVKWYDGYMGYGFIS--TLDETPVDYFVHKTQIYSLDKFPRTPILFNKEEVEFAVCDT 79

Query: 57 VQNDANGKYSAENLKLVPK 75
           +  A  + S  +  ++PK
Sbjct: 80 EKGKAAEEVSLPDKTIIPK 98


>gi|328908285|gb|EGG28044.1| cold-shock DNA-binding domain protein [Propionibacterium sp. P08]
          Length = 127

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +++Y+  KG+GF+T +G    G DV+++ SA+  AG+  L  GQ V +  V+
Sbjct: 4  GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNALKPGQKVDFGIVE 52


>gi|6911694|emb|CAB72144.1| cold-shock protein A [Streptococcus thermophilus]
          Length = 45

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          KG+GFIT    +E G D+F H S++ S G  +L E Q V +D
Sbjct: 2  KGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFD 39


>gi|76803160|ref|YP_331255.1| cold shock protein [Natronomonas pharaonis DSM 2160]
 gi|76559025|emb|CAI50623.1| probable cold shock protein [Natronomonas pharaonis DSM 2160]
          Length = 64

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++ ++N   GYGFI  E + E   DVF H   V      +L EGQ V +D  + D
Sbjct: 4  GTVDFFNDTGGYGFIETEDADE---DVFFHMEDVGGP---DLEEGQEVEFDIEEAD 53


>gi|332667975|ref|YP_004450763.1| cold-shock DNA-binding domain-containing protein
          [Haliscomenobacter hydrossis DSM 1100]
 gi|332336789|gb|AEE53890.1| cold-shock DNA-binding domain protein [Haliscomenobacter
          hydrossis DSM 1100]
          Length = 80

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H G++K++N  KG+GFI    S E   + F+H + +       + EG  VT++ V+N  
Sbjct: 18 MHTGTVKFFNESKGFGFIVDNSSNE---EFFVHVTGLVD----KIREGDSVTFN-VENGR 69

Query: 62 NGKYSAE 68
           G  + E
Sbjct: 70 KGMNAVE 76


>gi|153870420|ref|ZP_01999827.1| Cold-shock protein, DNA-binding [Beggiatoa sp. PS]
 gi|152073121|gb|EDN70180.1| Cold-shock protein, DNA-binding [Beggiatoa sp. PS]
          Length = 194

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +  +  +KG+GFI PE     G+DVF+H  A          EG ++ Y      +
Sbjct: 11 LQKGVLFTWKDEKGFGFILPEN---CGEDVFIHIRAFGKISR-RPKEGDIIYYHLKTTSS 66

Query: 62 N-GKYSAEN 69
          N GKY A N
Sbjct: 67 NKGKYRAYN 75


>gi|123301101|dbj|BAF45318.1| Y-box protein [Bombyx mori]
          Length = 272

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39
          G++KW+N   GYGFI      ++ +DVF+H++A+A
Sbjct: 40 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQTAIA 71


>gi|257053654|ref|YP_003131487.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
          12940]
 gi|256692417|gb|ACV12754.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
          12940]
          Length = 64

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++ ++N   GYGFI  E + E   DVF H   V      +L EGQ V +D  Q
Sbjct: 4  GTVDFFNDTGGYGFIETEDADE---DVFFHMEDVGGP---DLEEGQEVEFDIEQ 51


>gi|225010634|ref|ZP_03701104.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
          MS024-3C]
 gi|225005187|gb|EEG43139.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
          MS024-3C]
          Length = 63

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFI+ EG   +G + F+H S +       + EG  V ++  Q   
Sbjct: 1  MNKGTVKFFNDTKGFGFISEEG---AGKEHFVHISGLID----EIREGDEVEFELEQGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|47214418|emb|CAG00259.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 179

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD------DVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+   S+  G       DVF+H+S +   G  +L EG+ + + +
Sbjct: 6  GVCKWFNMRMGFGFIS--MSSRDGAPLDQNLDVFVHQSKLHMEGFRSLREGEALEFSF 61


>gi|301170784|dbj|BAJ12006.1| y box protein [Samia cynthia walkeri]
          Length = 139

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G++KW+N   GYGFI      ++ +DVF+H++A+
Sbjct: 15 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQTAI 45


>gi|149176767|ref|ZP_01855378.1| probable cold shock protein scoF [Planctomyces maris DSM 8797]
 gi|148844408|gb|EDL58760.1| probable cold shock protein scoF [Planctomyces maris DSM 8797]
          Length = 65

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+IK     KG+GFI     TESG D+F H S +       L EGQ V++   + +   +
Sbjct: 4  GTIKKVT-QKGFGFI----DTESGKDLFFHSSNLEGVSFEQLYEGQRVSFTEGRGEKGPR 58

Query: 65 YSAENLKLV 73
            AEN+K +
Sbjct: 59 --AENVKPI 65


>gi|332261688|ref|XP_003279897.1| PREDICTED: protein lin-28 homolog A-like [Nomascus leucogenys]
          Length = 208

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G ++L EG+ V + +
Sbjct: 42 GICKWFNVRMGFGFLSMIARAGVALDPPVDVFVHQSKLHMEGFWSLKEGEAVEFTF 97


>gi|322369491|ref|ZP_08044056.1| cold-shock DNA-binding domain protein [Haladaptatus
          paucihalophilus DX253]
 gi|320551223|gb|EFW92872.1| cold-shock DNA-binding domain protein [Haladaptatus
          paucihalophilus DX253]
          Length = 64

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G + ++N   GYGFI+   + +S DDVF H   V      +LTEG  + +D  Q
Sbjct: 4  GKVDFFNDTGGYGFIS---TDDSDDDVFFHMEDVGGE---DLTEGTDIEFDIEQ 51


>gi|145284588|gb|ABP52041.1| cold shock protein [Psychrobacter sp. BJ3]
          Length = 27

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 5/31 (16%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLH 34
          G +KW+N +KG+GFI P    +SGD DVF+H
Sbjct: 1  GQVKWFNAEKGFGFIAP----DSGDPDVFVH 27


>gi|86136205|ref|ZP_01054784.1| hypothetical protein MED193_18819 [Roseobacter sp. MED193]
 gi|85827079|gb|EAQ47275.1| hypothetical protein MED193_18819 [Roseobacter sp. MED193]
          Length = 463

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
          +G IK +  DKG+GFI  +G +E   DVF H + V  + +     G++V +D  ++    
Sbjct: 2  QGKIKAFIHDKGFGFIEVDGQSE---DVFFHITTVKDSSV-RCAVGEIVDFDAAESKRKP 57

Query: 63 GKYSAENLKL 72
          G   A N++L
Sbjct: 58 GTLEARNVRL 67


>gi|260752615|ref|YP_003225508.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283856365|ref|YP_162660.2| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|258551978|gb|ACV74924.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283775364|gb|AAV89549.2| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 189

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           ++KW+N  KGYGF+      +   D+F+H  A  +AG+     G+ +     Q+D
Sbjct: 123 TVKWFNRTKGYGFLIRNADQQ---DIFVHAEAFHAAGIKKFEAGKSLYACLRQSD 174


>gi|83951849|ref|ZP_00960581.1| cold shock DNA-binding domain protein [Roseovarius nubinhibens ISM]
 gi|83836855|gb|EAP76152.1| cold shock DNA-binding domain protein [Roseovarius nubinhibens ISM]
          Length = 129

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           IKW++  KG+GF    G  E   DVF+H   +  +GL +L  G+ +    ++    G+ +
Sbjct: 58  IKWFDKGKGFGFANTFGREE---DVFVHIEVLRRSGLADLQPGEALAIRVIEG-KRGRMA 113

Query: 67  AE 68
            E
Sbjct: 114 TE 115


>gi|114554895|ref|XP_513232.2| PREDICTED: protein lin-28 homolog A [Pan troglodytes]
          Length = 209

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF+        + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 42 GICKWFNVRMGFGFLCMTARAGVALDPHRDVFVHQSKLHMEGFRSLKEGEAVEFTF 97


>gi|295394518|ref|ZP_06804741.1| cold-shock domain family protein [Brevibacterium mcbrellneri ATCC
          49030]
 gi|294972697|gb|EFG48549.1| cold-shock domain family protein [Brevibacterium mcbrellneri ATCC
          49030]
          Length = 120

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 11/67 (16%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KG+GF+T    ++ G D+FLH++A+       +  G  + +D V    +G+
Sbjct: 4  GRVKWFDQEKGFGFVT----SDEG-DMFLHQTALPDG--VKVAPGTRLEFDVV----DGR 52

Query: 65 YSAENLK 71
             + LK
Sbjct: 53 RGKQVLK 59


>gi|262370718|ref|ZP_06064043.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          johnsonii SH046]
 gi|262314518|gb|EEY95560.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          johnsonii SH046]
          Length = 209

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 5/64 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          ++W++ +KGYGFI P  + +S D VFLH    A  G   +  G  + Y+ V  DA G+Y 
Sbjct: 8  VEWFD-EKGYGFIQP--NDDSKDRVFLHIKDFARQGPRPIL-GCALEYN-VLVDAQGRYR 62

Query: 67 AENL 70
          A+ +
Sbjct: 63 AQQV 66


>gi|326798201|ref|YP_004316020.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
 gi|326548965|gb|ADZ77350.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
          Length = 63

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KG+GFI P      G D+F+H S +  +    + E   V+Y+  Q   
Sbjct: 1  MQEGVVKFFNETKGFGFIVP---NAGGGDIFVHSSGLIDS----IRENDHVSYEVEQGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|113971703|ref|YP_735496.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-4]
 gi|113886387|gb|ABI40439.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4]
          Length = 185

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +  +N +KG+GFI PE S   G DVF+H + +            ++    +QND 
Sbjct: 1  MERGILVRWNDEKGFGFIQPEDS--KGKDVFIHITVLKHMARKPQVGDSILYRTEIQNDG 58

Query: 62 NGK 64
            K
Sbjct: 59 KVK 61


>gi|149913750|ref|ZP_01902282.1| cold shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
 gi|149812034|gb|EDM71865.1| cold shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
          Length = 135

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G  E   DVF+H   +  +GL +L  G+ +    ++    G+ +
Sbjct: 66  VKWFDKGKGFGFANTFGRDE---DVFVHVEVLRRSGLADLQPGEALAMRVIEG-KRGRMA 121

Query: 67  AE 68
            E
Sbjct: 122 TE 123


>gi|297467632|ref|XP_612469.5| PREDICTED: lin-28 homolog B [Bos taurus]
          Length = 254

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 39 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94


>gi|229595426|ref|XP_001017681.3| hypothetical protein TTHERM_00340170 [Tetrahymena thermophila]
 gi|225566130|gb|EAR97436.3| hypothetical protein TTHERM_00340170 [Tetrahymena thermophila
           SB210]
          Length = 801

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 8/68 (11%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYV 57
           ++G++K+++ DK YGFI  +   ES  D+F+H   +  AG     L +    + + + + 
Sbjct: 556 YKGTLKFFDQDKNYGFIVED---ESRTDIFVHFDDLQKAGIHKGILMDHKHSKSIRFQFS 612

Query: 58  QNDANGKY 65
             D  GKY
Sbjct: 613 MMDYIGKY 620


>gi|163788488|ref|ZP_02182934.1| cold shock protein [Flavobacteriales bacterium ALC-1]
 gi|159876808|gb|EDP70866.1| cold shock protein [Flavobacteriales bacterium ALC-1]
          Length = 63

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 9/55 (16%)

Query: 5  GSIKWYNPDKGYGFITPEGS-TESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++K++N  KG+GFIT EGS TE     F+H S +       + EG  V YD  +
Sbjct: 4  GTVKFFNDAKGFGFITEEGSNTEH----FVHISGLVDE----IREGDNVEYDLTE 50


>gi|289581524|ref|YP_003479990.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
 gi|289531077|gb|ADD05428.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
          Length = 64

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 6/54 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++ ++N   GYGFI+   + ++ DDVF H   V      +L EGQ + +D  Q
Sbjct: 4  GNVDFFNDTGGYGFIS---TDDADDDVFFHMEDVGGP---DLEEGQDIEFDIEQ 51


>gi|255038433|ref|YP_003089054.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
          fermentans DSM 18053]
 gi|254951189|gb|ACT95889.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
          18053]
          Length = 63

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 9/69 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K++N  KGYGFI P    +   D+F+H S +      ++ E   V+Y+ V+N   G 
Sbjct: 4  GTVKFFNESKGYGFIQPSNGEK---DIFVHVSGLQD----DIRENDKVSYE-VENGRKG- 54

Query: 65 YSAENLKLV 73
           +A N++++
Sbjct: 55 LNAVNVRVI 63


>gi|241761855|ref|ZP_04759941.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373769|gb|EER63329.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 189

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           ++KW+N  KGYGF+      +   D+F+H  A  +AG+     G+ +     Q+D
Sbjct: 123 TVKWFNRTKGYGFLIRNADQQ---DIFVHAEAFHAAGIKKFEAGKSLYACLRQSD 174


>gi|189066655|dbj|BAG36202.1| unnamed protein product [Homo sapiens]
          Length = 153

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY        N
Sbjct: 70  KGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPPKN 124

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 125 QKFQAVEVVL 134


>gi|55378476|ref|YP_136326.1| cold shock protein [Haloarcula marismortui ATCC 43049]
 gi|55231201|gb|AAV46620.1| cold shock protein [Haloarcula marismortui ATCC 43049]
          Length = 64

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++ ++N   GYGFI  E S E   DVF H   +      +L EGQ V ++  Q D   +
Sbjct: 4  GTVDFFNDTGGYGFIDTEDSDE---DVFFHMEDIDGP---DLEEGQEVEFEIEQADKGPR 57

Query: 65 YSAENL 70
            A+NL
Sbjct: 58 --AKNL 61


>gi|297478551|ref|XP_002707884.1| PREDICTED: lin-28 homolog B (C. elegans)-like [Bos taurus]
          Length = 254

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 39 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94


>gi|149640530|ref|XP_001506004.1| PREDICTED: similar to LIN28B [Ornithorhynchus anatinus]
          Length = 274

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGF---ITPEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           G  KW+N   G+GF   I+ EGS  +   DVF+H+S +   G  +L EG+ + + +
Sbjct: 52  GHCKWFNVRMGFGFISMISREGSPLDPAVDVFVHQSKLHMEGFRSLKEGEPLEFTF 107


>gi|314982320|gb|EFT26413.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL110PA3]
 gi|315092638|gb|EFT64614.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL110PA4]
          Length = 127

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G +++Y+  KG+GF+T +G    G DV+++ S V  AG+  L  GQ V +  V+
Sbjct: 4  GKVRFYDATKGFGFLTKDG----GGDVYVNAS-VLPAGVNTLKPGQKVDFGIVE 52


>gi|313204176|ref|YP_004042833.1| cold-shock DNA-binding protein family [Paludibacter
          propionicigenes WB4]
 gi|312443492|gb|ADQ79848.1| cold-shock DNA-binding protein family [Paludibacter
          propionicigenes WB4]
          Length = 63

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 9/70 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KG+GFI+ +GS +   + F+H S +       + EG  V +D +Q    G
Sbjct: 3  KGTVKFFNESKGFGFISEDGSKK---EHFVHISGLID----QIREGDTVEFD-LQEGKKG 54

Query: 64 KYSAENLKLV 73
            +A N+K++
Sbjct: 55 -LNAVNVKVI 63


>gi|17298531|gb|AAL38166.1| putative cold shock protein [Bradyrhizobium japonicum]
          Length = 56

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          +G+GFITP+  ++   DVF+H  A+ + G  +L EGQ V++  +++ A G  +A
Sbjct: 2  QGFGFITPDDGSK---DVFVHFXAIQNDGYKSLDEGQKVSF-TIESGAKGPAAA 51


>gi|86130406|ref|ZP_01049006.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
 gi|85819081|gb|EAQ40240.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
          Length = 82

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 9/71 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K++N  KG+GFI  + S E   +VF+H + V       L E   VT++    D    
Sbjct: 21 GKVKFFNTKKGFGFIAIDNSDE---EVFVHTTNVTG----RLRENDKVTFEV--EDGEKG 71

Query: 65 YSAENLKLVPK 75
           SA N+K V K
Sbjct: 72 PSAVNVKRVKK 82


>gi|149369607|ref|ZP_01889459.1| cold shock protein [unidentified eubacterium SCB49]
 gi|149357034|gb|EDM45589.1| cold shock protein [unidentified eubacterium SCB49]
          Length = 63

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT +   ++G D+F+H + +       L EG  V  +YV+ +   
Sbjct: 2  EGTVKFFNESKGFGFITND---DTGKDIFVHITGLNGQA---LNEGDKV--EYVEEEGRK 53

Query: 64 KYSAENLKLV 73
             A  ++++
Sbjct: 54 GMVAGQVRVI 63


>gi|268562898|ref|XP_002638697.1| Hypothetical protein CBG11894 [Caenorhabditis briggsae]
 gi|187029975|emb|CAP30963.1| hypothetical protein CBG_11894 [Caenorhabditis briggsae AF16]
          Length = 258

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 8/60 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KWY+  + YGFI+     +   DVF+H++A+A +      L  L + + + +D V+
Sbjct: 62  QGKVKWYSVLRRYGFIS---RNDGEKDVFVHQTAIAKSNTEKFYLRTLADEEDIVFDLVE 118


>gi|28201200|dbj|BAC56735.1| cold shock protein [Janthinobacterium sp. J3]
          Length = 174

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +  +N ++G+GFI   G++E     FLH SA+       L  G LVTY+ ++ D
Sbjct: 1  MRLQGRVIEWNDERGFGFIIQNGTSER---TFLHISALRKTKGRPLL-GSLVTYE-IRRD 55

Query: 61 ANGKYSAENLKLV 73
            G+  A   +L+
Sbjct: 56 DKGRLQAVAAELI 68


>gi|332233044|ref|XP_003265713.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein A-like, partial
           [Nomascus leucogenys]
          Length = 362

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
           G++KW+N   GYGFI      ++ +DVF+H++A+
Sbjct: 81  GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAI 111


>gi|319955744|ref|YP_004167011.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
 gi|319424404|gb|ADV51513.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
          Length = 63

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 7/52 (13%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++K++N  KG+GFIT +G      D F+H S +       + EG +V +D
Sbjct: 3  KGTVKFFNDTKGFGFITEDGVDR---DHFVHISGLID----EIREGDVVEFD 47


>gi|284166801|ref|YP_003405080.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
 gi|284016456|gb|ADB62407.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
          Length = 64

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G + ++N   GYGFI    + +S DDVF H   V      +LTEG  + +D  Q
Sbjct: 4  GKVDFFNDTGGYGFIE---TDDSDDDVFFHMEDVGGE---DLTEGTEIEFDIEQ 51


>gi|148681705|gb|EDL13652.1| mCG50433 [Mus musculus]
          Length = 305

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 11/73 (15%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G+++W N   GY FI      ++ +DVF+H++A+        L ++ +G+ V +D V+  
Sbjct: 60  GTVRWINVRNGYSFIN---RNDTKEDVFVHQTAIRKNNPRKYLRSVGDGETVEFDVVE-- 114

Query: 61  ANGKYSAENLKLV 73
             G+  AE  K+ 
Sbjct: 115 --GEKGAEAAKVT 125


>gi|54023130|ref|YP_117372.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54014638|dbj|BAD56008.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 89

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 3  HRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          + G++ W++  KG+GFI P EG       VF+  S++  +G   L EGQ V +
Sbjct: 15 YHGTVAWFDAPKGFGFIEPAEGPR---GPVFVDFSSIEMSGYRTLVEGQPVRF 64


>gi|260062739|ref|YP_003195819.1| Cold shock protein [Robiginitalea biformata HTCC2501]
 gi|88784307|gb|EAR15477.1| Cold shock protein [Robiginitalea biformata HTCC2501]
          Length = 63

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 4/37 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          + +G++K++N  KGYGFIT       G DVF+H S +
Sbjct: 1  MQKGTVKFFNESKGYGFIT----GVEGKDVFVHASGL 33


>gi|312092494|ref|XP_003147356.1| cold-shock DNA-binding domain-containing protein [Loa loa]
 gi|307757478|gb|EFO16712.1| cold-shock DNA-binding domain-containing protein [Loa loa]
          Length = 227

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 7/53 (13%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58
          +N   GYGFI      ++GDD+F+H++AV        L +L +G+ V +D V+
Sbjct: 1  FNVKNGYGFIN---RADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVE 50


>gi|14548150|gb|AAK66807.1|U40238_30 RNA-binding cold-shock protein [uncultured crenarchaeote 4B7]
          Length = 64

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 12/54 (22%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++KW+N  KG+GFI  E   +   D+F+H++ +         EGQ+   D V+
Sbjct: 4  GTVKWFNQTKGFGFIERENDDK---DLFVHKTEI---------EGQIRDGDKVE 45


>gi|73973951|ref|XP_539064.2| PREDICTED: similar to RNA-binding protein LIN-28 [Canis
          familiaris]
          Length = 251

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 31 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 86


>gi|209735380|gb|ACI68559.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|209738580|gb|ACI70159.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
          Length = 111

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G++KW+N   GYGFI      ++ +DVF+H++A+
Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAI 71


>gi|154494222|ref|ZP_02033542.1| hypothetical protein PARMER_03572 [Parabacteroides merdae ATCC
           43184]
 gi|154086084|gb|EDN85129.1| hypothetical protein PARMER_03572 [Parabacteroides merdae ATCC
           43184]
          Length = 152

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 6/54 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           V +G + ++N  KGYGFI   G   SG+  F H   V++  L +++E  +VT++
Sbjct: 86  VLKGRVDYFNESKGYGFIKDLG---SGEKYFFH---VSNNTLTDISETDIVTFE 133


>gi|257069730|ref|YP_003155985.1| cold-shock DNA-binding protein family [Brachybacterium faecium
          DSM 4810]
 gi|256560548|gb|ACU86395.1| cold-shock DNA-binding protein family [Brachybacterium faecium
          DSM 4810]
          Length = 128

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +K+Y+ +KG+GFI      E G  V++H + +   G+  L  G  V +D V    +G
Sbjct: 3  RGKVKFYDAEKGFGFIL---DDEDGQSVYVHATNLPD-GVTTLRPGTRVDFDMV----DG 54

Query: 64 KYSAENLKL 72
          +   + L L
Sbjct: 55 RRGPQVLAL 63


>gi|255530444|ref|YP_003090816.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366]
 gi|255343428|gb|ACU02754.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366]
          Length = 63

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 9/58 (15%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          + +G++K++N  KG+GFI P     +GD ++F+H S +  +    + E   V+YD  Q
Sbjct: 1  MQQGTVKFFNETKGFGFIVP----ANGDSEIFVHSSGLIDS----IRENDSVSYDVEQ 50


>gi|257095960|ref|YP_003169601.1| cold-shock DNA-binding domain-containing protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048484|gb|ACV37672.1| cold-shock DNA-binding domain protein [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 203

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K +N D+G+GFI P   +  G ++F+H  A  +  L     GQ +T++ ++ +A GK
Sbjct: 5  GTLKSWNDDRGFGFIEP---SLGGQEIFVHIKAFETR-LGRPQIGQRLTFE-IEMNAEGK 59

Query: 65 YSAENLKLV 73
            A+ ++ V
Sbjct: 60 KRAKRVQPV 68


>gi|312132318|ref|YP_003999657.1| cspc1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773581|gb|ADQ03069.1| CspC1 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 79

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTY 54
          + +G++K++   KG+GFI P+   + G DVF+H + +   G  N    L EG  V Y
Sbjct: 1  MAQGTVKFFLAKKGFGFIQPD---DGGGDVFVHYAEIKDDGSTNKFKMLYEGDRVEY 54


>gi|289643977|ref|ZP_06476078.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
 gi|289506205|gb|EFD27203.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
          Length = 146

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQN 59
          MV  G I  ++  +GYGFI P+     GDD+F+H + +     LF    G LV ++  ++
Sbjct: 1  MVGTGRILRFDGVRGYGFIAPDA---GGDDIFMHANDLQDEKHLFQ--PGTLVEFEAEES 55

Query: 60 DANGKYSAENL 70
          D   K S   L
Sbjct: 56 DRGPKASVVRL 66


>gi|196019570|ref|XP_002119003.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens]
 gi|190577377|gb|EDV18511.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens]
          Length = 203

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/18 (61%), Positives = 16/18 (88%)

Query: 5  GSIKWYNPDKGYGFITPE 22
          G++KW+NP+KGYGF+  E
Sbjct: 5  GTVKWFNPEKGYGFVKQE 22


>gi|309790908|ref|ZP_07685450.1| hypothetical protein OSCT_1401 [Oscillochloris trichoides DG6]
 gi|308227022|gb|EFO80708.1| hypothetical protein OSCT_1401 [Oscillochloris trichoides DG6]
          Length = 190

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G I  +  D+GYGFITP+     G DVFLH S +
Sbjct: 6  GKITMWKEDRGYGFITPD---HGGPDVFLHASIL 36


>gi|326801255|ref|YP_004319074.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
 gi|326552019|gb|ADZ80404.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
          Length = 65

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 4/30 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KG+GFI      E G D+F+H
Sbjct: 4  GKVKWFNAQKGFGFIIQ----EDGTDIFVH 29


>gi|284163596|ref|YP_003401875.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
 gi|284013251|gb|ADB59202.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
          Length = 64

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++ ++N   GYGFI  E + E   DVF H   +      +L EGQ + +D  Q
Sbjct: 3  KGTVDFFNDTGGYGFIETEDADE---DVFFHMEDIGGP---DLEEGQELEFDIEQ 51


>gi|157960755|ref|YP_001500789.1| cold-shock DNA-binding domain-containing protein [Shewanella
          pealeana ATCC 700345]
 gi|157845755|gb|ABV86254.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
          700345]
          Length = 205

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G I  +N DKG+GFI      E    VFLH SA AS        G+ V +  +  D 
Sbjct: 6  VSTGVIDSWNDDKGFGFIQIP---EQKQQVFLHISAFASQSP-RPQSGKQVQFT-LAKDK 60

Query: 62 NGKYSAENLKLV 73
           GK+ AE  +L+
Sbjct: 61 QGKWRAEKAQLL 72


>gi|5714743|gb|AAD48060.1|AF171925_1 cold shock protein A [Rhodococcus sp. 5/14]
          Length = 57

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47
          +WYN DKG+G ITP+  ++   D F+H +A+ S    +++
Sbjct: 3  RWYNADKGFGCITPDDGSK---DCFVHFTALRSERWLSIS 39


>gi|296225904|ref|XP_002758696.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus]
          Length = 207

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++   ST    +   DVF+H+S +   G  +L + + V + +
Sbjct: 42 GICKWFNVRMGFGFLSMTASTGVALDPAVDVFMHQSKLHMEGFRSLKKDEAVEFTF 97


>gi|326530806|dbj|BAK01201.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 149

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           RG IK +  +KG+GFI P+G  E    VFLH S +   G +   EG +V++
Sbjct: 66  RGVIKNFCRNKGHGFIQPDGEAEP---VFLHISDI--EGEWCPKEGDVVSF 111


>gi|296128606|ref|YP_003635856.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
 gi|296020421|gb|ADG73657.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
          Length = 127

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 4/36 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
          G +KW++ ++G+GFI    + + G +VFLH SA+ +
Sbjct: 4  GKVKWFDTERGFGFI----ADDEGGEVFLHASALPA 35


>gi|313202310|ref|YP_004040968.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. MP688]
 gi|312441626|gb|ADQ85732.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688]
          Length = 201

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQN 59
          M ++G I  +   +G+GFITP G    G+ VFLH SA +        EG +LV+Y+    
Sbjct: 1  MRYQGRITTWKDKQGFGFITPNG---GGEPVFLHISAFSHRK--RRPEGDELVSYERTL- 54

Query: 60 DANGKYSAENLKLV 73
          DA G+  A  +  V
Sbjct: 55 DAKGRPQALKVAFV 68


>gi|301763343|ref|XP_002917091.1| PREDICTED: protein lin-28 homolog B-like [Ailuropoda melanoleuca]
          Length = 257

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 39 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94


>gi|218512161|ref|ZP_03509001.1| cold shock protein [Rhizobium etli 8C-3]
          Length = 37

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 26/35 (74%)

Query: 37 AVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
          AV  AG+ +L +GQ ++YD V+++ +GK SA+ L+
Sbjct: 1  AVERAGMRDLKDGQKLSYDLVRDNKSGKMSADRLQ 35


>gi|148231151|ref|NP_001089414.1| cold shock domain protein A [Xenopus laevis]
 gi|62740182|gb|AAH94195.1| MGC115344 protein [Xenopus laevis]
          Length = 221

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 3/37 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
          +G++KW+N   GYGFI      ++ +DVF+H+ A A+
Sbjct: 37 QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQGAEAA 70


>gi|262376761|ref|ZP_06069989.1| cold shock/excaliber domain-containing protein CspD
          [Acinetobacter lwoffii SH145]
 gi|262308471|gb|EEY89606.1| cold shock/excaliber domain-containing protein CspD
          [Acinetobacter lwoffii SH145]
          Length = 240

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          M   G IK YN D+G+GFI  EG ++   D+F H
Sbjct: 1  MFQEGKIKTYNEDRGFGFIQIEGQSK---DLFFH 31


>gi|148232804|ref|NP_001080597.1| calcium regulated heat stable protein 1, 24kDa [Xenopus laevis]
 gi|27696469|gb|AAH44047.1| Carhsp1-prov protein [Xenopus laevis]
          Length = 100

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 3/33 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          V++G  K ++  KG+GFITPE   + G D+FLH
Sbjct: 68 VYKGVCKSFSRSKGHGFITPE---DGGPDIFLH 97


>gi|302549706|ref|ZP_07302048.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
 gi|302467324|gb|EFL30417.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
          Length = 164

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          +G +  ++  KGYGFI P+     G+DVF+H + +A  G   LT G  V +D +
Sbjct: 3  QGVVVRFDDVKGYGFIAPD---NGGEDVFVHVNDLAEPGT-TLTSGTRVVFDVL 52


>gi|257386410|ref|YP_003176183.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
 gi|257168717|gb|ACV46476.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
          Length = 64

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++ ++N   GYGFI  E   ++ DDVF H   V      +L EG  V +D  Q D
Sbjct: 4  GTVDFFNDTGGYGFIETE---DADDDVFFHMEDVGGP---DLEEGTDVEFDIEQAD 53


>gi|149278086|ref|ZP_01884225.1| cold shock protein [Pedobacter sp. BAL39]
 gi|149231284|gb|EDM36664.1| cold shock protein [Pedobacter sp. BAL39]
          Length = 63

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KG+GFI P  S ES  ++F+H + +    L ++ E   VTYD V+   
Sbjct: 1  MQEGVVKFFNETKGFGFIIP-NSGES--EIFVHSTGL----LADIRENDKVTYD-VEEGR 52

Query: 62 NGKYSAENLKLV 73
           G  +A N+K++
Sbjct: 53 KG-LNAVNVKVI 63


>gi|157816953|ref|NP_001102739.1| protein lin-28 homolog A [Rattus norvegicus]
 gi|149024199|gb|EDL80696.1| rCG30757 [Rattus norvegicus]
          Length = 209

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97


>gi|332218575|ref|XP_003258430.1| PREDICTED: protein lin-28 homolog B-like [Nomascus leucogenys]
          Length = 250

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87


>gi|296207133|ref|XP_002750510.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus]
          Length = 209

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97


>gi|257387381|ref|YP_003177154.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
 gi|257169688|gb|ACV47447.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
          Length = 64

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G++ ++N   GYGFI  E   ++ DDVF H   V      +L EG  V +D  Q D
Sbjct: 4  GTVDFFNDTGGYGFIETE---DADDDVFFHMEDVGGP---DLEEGTDVDFDIEQAD 53


>gi|109072184|ref|XP_001086990.1| PREDICTED: protein lin-28 homolog B isoform 1 [Macaca mulatta]
          Length = 248

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87


>gi|291045286|ref|NP_001166916.1| protein lin-28 homolog A [Felis catus]
 gi|73950555|ref|XP_854985.1| PREDICTED: similar to RNA-binding protein LIN-28 [Canis
          familiaris]
 gi|264670123|gb|ACY72346.1| lin-28-like protein [Felis catus]
          Length = 206

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 93


>gi|51972214|ref|NP_001004317.1| protein lin-28 homolog B [Homo sapiens]
 gi|74758701|sp|Q6ZN17|LN28B_HUMAN RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
 gi|47077279|dbj|BAD18558.1| unnamed protein product [Homo sapiens]
 gi|71724934|gb|AAZ38897.1| LIN28B [Homo sapiens]
 gi|119568819|gb|EAW48434.1| lin-28 homolog B (C. elegans), isoform CRA_b [Homo sapiens]
 gi|123239097|emb|CAI21661.2| lin-28 homolog B (C. elegans) [Homo sapiens]
 gi|123240273|emb|CAI20969.2| lin-28 homolog B (C. elegans) [Homo sapiens]
 gi|187953595|gb|AAI37527.1| Lin-28 homolog B (C. elegans) [Homo sapiens]
 gi|223459806|gb|AAI37528.1| Lin-28 homolog B (C. elegans) [Homo sapiens]
          Length = 250

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87


>gi|284036854|ref|YP_003386784.1| Cold-shock protein DNA-binding protein [Spirosoma linguale DSM
          74]
 gi|283816147|gb|ADB37985.1| Cold-shock protein DNA-binding protein [Spirosoma linguale DSM
          74]
          Length = 290

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          VH G +K Y P+KG+GF++    +++  DVF H   V  +    +   +L +YD
Sbjct: 3  VHFGVVKKYFPEKGFGFVSHPLDSKTRQDVFFHIKNVQKSN--KVIAEKLSSYD 54


>gi|226953537|ref|ZP_03824001.1| cold-shock DNA-binding protein family protein [Acinetobacter sp.
          ATCC 27244]
 gi|226835715|gb|EEH68098.1| cold-shock DNA-binding protein family protein [Acinetobacter sp.
          ATCC 27244]
          Length = 232

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G IK YN D+G+GFI  E       D+F H +     G    T G+LV +  V++ 
Sbjct: 1  MFLTGKIKNYNSDRGFGFIEVE---HDRSDIFFHITDFPKIGGEPKT-GELVKFLIVED- 55

Query: 61 ANGKYSAENL 70
            GK+ A N+
Sbjct: 56 -KGKFKATNI 64


>gi|224370464|ref|YP_002604628.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
 gi|223693181|gb|ACN16464.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
          Length = 217

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE--GQLVTYDYVQ 58
          M+ RG+I ++N  KG+GFITP      G  +F H   + S    NL     Q +TY  + 
Sbjct: 1  MLRRGTITFWNDGKGFGFITPNA---GGKQLFFH---IKSCSPHNLRPEINQSITYS-LS 53

Query: 59 NDANGKYSAENLKL 72
           D  G+  A  + L
Sbjct: 54 VDKQGRPCAVKVIL 67


>gi|308806684|ref|XP_003080653.1| glycogen debranching enzyme (ISS) [Ostreococcus tauri]
 gi|116059114|emb|CAL54821.1| glycogen debranching enzyme (ISS) [Ostreococcus tauri]
          Length = 141

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL 51
           R  + W+N  +GYG++ P   +E   DVF+H+S +   G  ++ E +L
Sbjct: 40 RREQVTWFNCVRGYGYVRPHDGSE---DVFVHQSELQMDGFRSVWEVRL 85


>gi|114608662|ref|XP_001143138.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 269

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 51  GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 106


>gi|300796242|ref|NP_001179986.1| protein lin-28 homolog A [Bos taurus]
 gi|297472202|ref|XP_002685742.1| PREDICTED: lin-28 homolog [Bos taurus]
 gi|296490058|gb|DAA32171.1| lin-28 homolog [Bos taurus]
          Length = 205

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 93


>gi|178056460|ref|NP_001116605.1| protein lin-28 homolog A [Sus scrofa]
 gi|169627101|gb|ACA58282.1| LIN28 [Sus scrofa]
          Length = 205

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 93


>gi|328860156|gb|EGG09263.1| hypothetical protein MELLADRAFT_104398 [Melampsora
          larici-populina 98AG31]
          Length = 334

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLF-NLTEGQLVTY 54
          +G  K++N  KG+GFI  +   E G+ +VF+H +++   G F +L EG+ V Y
Sbjct: 31 KGVCKFFNSQKGFGFINDDHPDELGNQEVFVHYTSIGGKGGFRSLAEGEEVEY 83


>gi|110597967|ref|ZP_01386248.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
 gi|110340416|gb|EAT58905.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
          Length = 70

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 5  GSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNL 46
          G +KW++  KG+GFI  P G    G+D+F+H S + S   F  
Sbjct: 4  GKVKWFDVRKGFGFILNPNG----GEDIFVHFSNIVSEEKFRF 42


>gi|296237954|ref|XP_002763968.1| PREDICTED: hypothetical protein LOC100400889 [Callithrix jacchus]
          Length = 297

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           V +G  K ++  +G+GFITPE  +E   D+F+H S +   G +   EG  VTY
Sbjct: 212 VFKGVCKQFSRAQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTY 259


>gi|268564326|ref|XP_002639074.1| C. briggsae CBR-CEY-2 protein [Caenorhabditis briggsae]
          Length = 256

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 8/60 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KWY+  + YGFI+     +   D+F+H++A+A +      L  L + + + +D V+
Sbjct: 62  QGKVKWYSVLRRYGFIS---RNDGEKDIFVHQTAIAKSDTEKFYLRTLADEEDIVFDLVE 118


>gi|114608664|ref|XP_001143220.1| PREDICTED: protein lin-28 homolog B isoform 2 [Pan troglodytes]
          Length = 250

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87


>gi|332293275|ref|YP_004431884.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332171361|gb|AEE20616.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 63

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K++N  KG+GFIT EG  +   D F+H S +       + EG  V ++    + 
Sbjct: 1  MNNGTVKFFNDTKGFGFITEEGVEK---DHFVHISGLIDE----IREGDQVEFEL--KEG 51

Query: 62 NGKYSAENLKLV 73
          N   +A N++++
Sbjct: 52 NKGLNAVNVRVI 63


>gi|297665898|ref|XP_002811262.1| PREDICTED: protein lin-28 homolog A-like [Pongo abelii]
          Length = 209

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97


>gi|209736846|gb|ACI69292.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|303658085|gb|ADM15905.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
          Length = 194

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G++KW+N   GYGFI      ++ +DVF+H++A+
Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAI 71


>gi|163752832|ref|ZP_02159956.1| cold shock protein [Kordia algicida OT-1]
 gi|161326564|gb|EDP97889.1| cold shock protein [Kordia algicida OT-1]
          Length = 63

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 9/53 (16%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL------FNLTEGQ 50
          RG++K++N  KG+GFI  EGS +   + F+H S +           F LTEG+
Sbjct: 3  RGTVKFFNDTKGFGFIVEEGSNK---EHFVHISGLIDEVRQGDEVEFELTEGR 52


>gi|332245102|ref|XP_003271702.1| PREDICTED: protein lin-28 homolog A-like [Nomascus leucogenys]
          Length = 209

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97


>gi|255011084|ref|ZP_05283210.1| putative DNA-binding protein [Bacteroides fragilis 3_1_12]
 gi|313148891|ref|ZP_07811084.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137658|gb|EFR55018.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 146

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           H G I+++N  KGYGF+     T++G+  F H S+  +     + EG  VT++
Sbjct: 83  HMGRIEYFNAAKGYGFVK---DTDNGEKYFFHISSAPA----TIAEGDRVTFE 128


>gi|221052274|ref|XP_002257713.1| cold-shock protein [Plasmodium knowlesi strain H]
 gi|193807544|emb|CAQ38049.1| cold-shock protein, putative [Plasmodium knowlesi strain H]
          Length = 144

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47
          G++  ++  KGYGFI P    + G D+F+H + +  A  F+LT
Sbjct: 34 GTVIKFDRRKGYGFIKP---NDGGPDIFVHYTDICQARTFSLT 73


>gi|22003878|ref|NP_665832.1| protein lin-28 homolog A [Mus musculus]
 gi|81914711|sp|Q8K3Y3|LN28A_MOUSE RecName: Full=Protein lin-28 homolog A; Short=Lin-28A; AltName:
          Full=Testis-expressed protein 17
 gi|21842298|gb|AAM77749.1|AF521097_1 RNA-binding protein LIN-28 [Mus musculus]
 gi|126540562|emb|CAM46107.1| lin-28 homolog (C. elegans) [Mus musculus]
 gi|148698092|gb|EDL30039.1| lin-28 homolog (C. elegans) [Mus musculus]
          Length = 209

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97


>gi|295398664|ref|ZP_06808688.1| cold shock protein CspA [Aerococcus viridans ATCC 11563]
 gi|294973099|gb|EFG48902.1| cold shock protein CspA [Aerococcus viridans ATCC 11563]
          Length = 70

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M + G +K +N  +G+GFI      E G D+F+H SA+      +LT GQ V ++  +
Sbjct: 1  MTYYGIVKTFNEKEGFGFIELPDFPEEG-DIFVHFSALLHLEQSSLTVGQKVHFEIAE 57


>gi|46329818|gb|AAH68304.1| Lin-28 homolog (C. elegans) [Mus musculus]
          Length = 209

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97


>gi|332187120|ref|ZP_08388860.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
 gi|332012820|gb|EGI54885.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
          Length = 189

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
           ++KW+N  KGYGF+        G D+F+H   +   G+  +  GQ
Sbjct: 124 AVKWFNRLKGYGFLL---RDSDGADIFVHMETLRRGGIVEVEPGQ 165


>gi|297291425|ref|XP_002803893.1| PREDICTED: protein lin-28 homolog B isoform 2 [Macaca mulatta]
          Length = 255

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 39 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94


>gi|296208902|ref|XP_002751304.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus]
          Length = 208

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDD----VFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++         D    VF+H+S +   G  +L EG+ V + +
Sbjct: 42 GICKWFNVRMGFGFLSMTARARVALDPPVNVFVHQSKLHMEGFRSLKEGEAVEFTF 97


>gi|262369347|ref|ZP_06062675.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          johnsonii SH046]
 gi|262315415|gb|EEY96454.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          johnsonii SH046]
          Length = 97

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 7/33 (21%)

Query: 3  HRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLH 34
          ++G +K YN DKG+GFI +PEG      DVF H
Sbjct: 6  YQGKVKQYNADKGFGFISSPEG------DVFFH 32


>gi|126328607|ref|XP_001363469.1| PREDICTED: similar to RNA-binding protein LIN-28 [Monodelphis
          domestica]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 39 GICKWFNVRMGFGFLSMTARAGVALDQPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 94


>gi|218263152|ref|ZP_03477371.1| hypothetical protein PRABACTJOHN_03052 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222937|gb|EEC95587.1| hypothetical protein PRABACTJOHN_03052 [Parabacteroides johnsonii
           DSM 18315]
          Length = 154

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 6/54 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           V +G + ++N  KGYGFI   G   SG+  F H   V++  L +++E  +VT++
Sbjct: 86  VLKGRVDYFNESKGYGFIKDLG---SGEKYFFH---VSNNTLTDISETDIVTFE 133


>gi|13375938|ref|NP_078950.1| protein lin-28 homolog A [Homo sapiens]
 gi|74752750|sp|Q9H9Z2|LN28A_HUMAN RecName: Full=Protein lin-28 homolog A; Short=Lin-28A; AltName:
          Full=Zinc finger CCHC domain-containing protein 1
 gi|21842304|gb|AAM77751.1|AF521099_1 RNA-binding protein LIN-28 [Homo sapiens]
 gi|10433955|dbj|BAB14075.1| unnamed protein product [Homo sapiens]
 gi|20306208|gb|AAH28566.1| LIN28 protein [Homo sapiens]
 gi|56206248|emb|CAI21500.1| lin-28 homolog (C. elegans) [Homo sapiens]
 gi|119628219|gb|EAX07814.1| lin-28 homolog (C. elegans), isoform CRA_a [Homo sapiens]
 gi|123993445|gb|ABM84324.1| lin-28 homolog (C. elegans) [synthetic construct]
 gi|124000419|gb|ABM87718.1| lin-28 homolog (C. elegans) [synthetic construct]
 gi|261860154|dbj|BAI46599.1| lin-28 homolog [synthetic construct]
          Length = 209

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97


>gi|297678780|ref|XP_002817240.1| PREDICTED: LOW QUALITY PROTEIN: protein lin-28 homolog B-like
           [Pongo abelii]
          Length = 269

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 51  GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 106


>gi|84498519|ref|ZP_00997289.1| cold shock protein [Janibacter sp. HTCC2649]
 gi|84381262|gb|EAP97146.1| cold shock protein [Janibacter sp. HTCC2649]
          Length = 134

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K+Y+ +KG+GF++ +   E G DVF+  SA+   G+  L  G  + +  V+    G+
Sbjct: 4  GKVKFYDSEKGFGFVSTDDPAEGG-DVFVPSSALPE-GVTALKNGARIEFGIVE----GR 57

Query: 65 YSAENLKL 72
            A+ L +
Sbjct: 58 RGAQALSV 65


>gi|295134497|ref|YP_003585173.1| cold shock protein [Zunongwangia profunda SM-A87]
 gi|294982512|gb|ADF52977.1| cold shock protein [Zunongwangia profunda SM-A87]
          Length = 63

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 7/52 (13%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++K++N  KG+GFIT EG  +   D F+H + +       + EG  V +D
Sbjct: 3  KGTVKFFNDSKGFGFITEEGVDK---DHFVHVTGLID----EIREGDEVKFD 47


>gi|301755044|ref|XP_002913351.1| PREDICTED: protein lin-28 homolog A-like [Ailuropoda melanoleuca]
 gi|281351598|gb|EFB27182.1| hypothetical protein PANDA_001150 [Ailuropoda melanoleuca]
          Length = 206

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 93


>gi|119568818|gb|EAW48433.1| lin-28 homolog B (C. elegans), isoform CRA_a [Homo sapiens]
          Length = 257

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 39 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94


>gi|293345049|ref|XP_002725925.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 1 [Rattus
          norvegicus]
 gi|293356922|ref|XP_001069344.2| PREDICTED: lin-28 homolog B isoform 1 [Rattus norvegicus]
          Length = 271

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EG+  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 85


>gi|293345053|ref|XP_002725927.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 3 [Rattus
           norvegicus]
 gi|293356924|ref|XP_002729026.1| PREDICTED: lin-28 homolog B isoform 2 [Rattus norvegicus]
 gi|149046920|gb|EDL99668.1| rCG58531, isoform CRA_b [Rattus norvegicus]
          Length = 316

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           G  KW+N   G+GFI+    EG+  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 75  GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 130


>gi|148673097|gb|EDL05044.1| lin-28 homolog B (C. elegans), isoform CRA_b [Mus musculus]
          Length = 281

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EG+  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 40 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 95


>gi|281352788|gb|EFB28372.1| hypothetical protein PANDA_005261 [Ailuropoda melanoleuca]
          Length = 276

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 58  GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 113


>gi|213512442|ref|NP_001133414.1| cold shock domain-containing protein C2 [Salmo salar]
 gi|209153912|gb|ACI33188.1| Cold shock domain-containing protein C2 [Salmo salar]
          Length = 159

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K +   +G+GFI P   T  GDD+F+H S +   G +   EG  VTY   +    N
Sbjct: 72  KGVCKSFCRSQGHGFIRP---TNGGDDIFVHISDI--EGEYVPVEGDEVTYKVSRIPPKN 126

Query: 63  GKYSAENLKLV 73
            K  A  +K+V
Sbjct: 127 LKIQAVEVKIV 137


>gi|117921981|ref|YP_871173.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          ANA-3]
 gi|117614313|gb|ABK49767.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3]
          Length = 192

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +  +N +KG+GFI PE   + G DVF+H + +            ++    +QND 
Sbjct: 1  MERGILVRWNDEKGFGFIQPE---QQGKDVFIHITVLKHMARKPQVGDSILYRTEIQNDG 57

Query: 62 NGK 64
            K
Sbjct: 58 KVK 60


>gi|291399525|ref|XP_002716148.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus]
 gi|291409216|ref|XP_002720890.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus]
          Length = 209

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97


>gi|227494398|ref|ZP_03924714.1| cold shock protein [Actinomyces coleocanis DSM 15436]
 gi|226832132|gb|EEH64515.1| cold shock protein [Actinomyces coleocanis DSM 15436]
          Length = 125

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 4/34 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G +K+++ DKG+GFI     ++ G+ VFLH SA+
Sbjct: 4  GKVKFFDADKGFGFI----ESDDGESVFLHASAL 33


>gi|296198875|ref|XP_002746913.1| PREDICTED: protein lin-28 homolog B-like isoform 1 [Callithrix
          jacchus]
          Length = 250

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87


>gi|218196316|gb|EEC78743.1| hypothetical protein OsI_18955 [Oryza sativa Indica Group]
          Length = 66

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          +KW++  KG+GFIT E  +E   D+F+ +S++   G  ++ +G ++
Sbjct: 2  VKWFDTTKGFGFITLEDGSE---DLFVRQSSLKFDGYQSINDGDVI 44


>gi|145284582|gb|ABP52038.1| cold shock protein [Psychrobacter sp. BJ3]
          Length = 27

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 5/31 (16%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLH 34
          G +KW+N +KG+GFI P    +SGD DVF+H
Sbjct: 1  GLVKWFNAEKGFGFIAP----DSGDPDVFVH 27


>gi|332669174|ref|YP_004452182.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332338212|gb|AEE44795.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
          484]
          Length = 126

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 4/36 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
          G +KW++ ++G+GFI    + + G +VFLH SA+ +
Sbjct: 4  GKVKWFDTERGFGFI----ADDDGGEVFLHASALPA 35


>gi|120437418|ref|YP_863104.1| cold shock-like protein [Gramella forsetii KT0803]
 gi|117579568|emb|CAL68037.1| cold shock-like protein [Gramella forsetii KT0803]
          Length = 64

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 6/52 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G++K++N  KGYGFIT +   ++  D+F+H + +       L EG  V Y+
Sbjct: 2  QGTVKFFNESKGYGFITND---DTKRDIFVHITGLNGE---TLQEGDRVEYE 47


>gi|78042603|ref|NP_001026942.1| protein lin-28 homolog B [Mus musculus]
 gi|71724928|gb|AAZ38894.1| LIN28B [Mus musculus]
 gi|111598825|gb|AAH89037.1| Lin-28 homolog B (C. elegans) [Mus musculus]
          Length = 271

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EG+  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 85


>gi|254439666|ref|ZP_05053160.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus
           307]
 gi|198255112|gb|EDY79426.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus
           307]
          Length = 181

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G      DVF+H   +  AGL +L  G+ +    +Q    G  +
Sbjct: 112 VKWFDKGKGFGFANVFGDDA---DVFVHNEVLRLAGLADLFSGEAIALRAMQGK-RGLMA 167

Query: 67  AENL 70
           AE L
Sbjct: 168 AEVL 171



 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G IKW++  KG+GFI  +   + G D+ LH + + + G  ++ +G  +   +V    
Sbjct: 14 VAAGHIKWFDAVKGFGFILVQ---DGGADILLHANVLRNFGQSSVADGTGIEV-WVAQTE 69

Query: 62 NGKYSAENLKL 72
           G  + E L +
Sbjct: 70 RGLQAVEILSM 80


>gi|114564799|ref|YP_752313.1| cold-shock DNA-binding domain-containing protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114336092|gb|ABI73474.1| cold-shock DNA-binding protein family [Shewanella frigidimarina
          NCIMB 400]
          Length = 204

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG++  +N +KG+GFI PE  T    DVF+H S +       +   +++ +   +N  
Sbjct: 1  MERGTLIRWNTEKGFGFIKPE--TGDNQDVFIHISTLKHMARKPIVGDEILFHR--ENQP 56

Query: 62 NGKYSA 67
          +GK  A
Sbjct: 57 DGKVKA 62


>gi|163755667|ref|ZP_02162786.1| cold shock protein [Kordia algicida OT-1]
 gi|161324580|gb|EDP95910.1| cold shock protein [Kordia algicida OT-1]
          Length = 69

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 11/71 (15%)

Query: 4  RGSIKWYNPDKGYGFITPEGS-TESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          +G++K++N  KG+GFIT EG+ TE     F+H S +       + EG  V +D +Q    
Sbjct: 9  KGTVKFFNDTKGFGFITEEGTNTEH----FVHISGLIDE----VREGDEVEFD-LQEGRK 59

Query: 63 GKYSAENLKLV 73
          G  +A N+K++
Sbjct: 60 G-LNAVNVKVI 69


>gi|149695055|ref|XP_001504139.1| PREDICTED: RNA-binding protein LIN-28 [Equus caballus]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 93


>gi|84623636|ref|YP_451008.1| hypothetical protein XOO_1979 [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|121632095|ref|YP_001001457.1| integral membrane protein [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|188576851|ref|YP_001913780.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188577043|ref|YP_001913972.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84367576|dbj|BAE68734.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
          MAFF 311018]
 gi|116247011|gb|ABJ89937.1| integral membrane protein [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|188521303|gb|ACD59248.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521495|gb|ACD59440.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 60

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G ++ +N  KG GF TP G    GD  F+H SA A         G+++TY  ++ D
Sbjct: 1  MRYQGRLRDWNDHKGVGFATPNG---GGDRAFVHISAFAQQSR-RPRNGEIITY-AIERD 55

Query: 61 ANGK 64
          A  +
Sbjct: 56 AQKR 59


>gi|327404541|ref|YP_004345379.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
          16823]
 gi|327320049|gb|AEA44541.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
          16823]
          Length = 63

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 10/71 (14%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFI  E       D+F+H + +      ++ E   VTYD  +N  
Sbjct: 1  MNKGTVKFFNDAKGFGFIKGENEQ----DIFVHATGLNQ----DIRENDNVTYD-TENGR 51

Query: 62 NGKYSAENLKL 72
          NG  +A N+ L
Sbjct: 52 NG-LNAVNVSL 61


>gi|312892429|ref|ZP_07751924.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
          DSM 18603]
 gi|311295213|gb|EFQ72387.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
          DSM 18603]
          Length = 65

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          M   G++K++N  KG+GFI P   +E   +VF+H S +
Sbjct: 1  MQKEGTVKFFNETKGFGFIIPADGSE---EVFVHSSGL 35


>gi|297665296|ref|XP_002811006.1| PREDICTED: LOW QUALITY PROTEIN: nuclease-sensitive element-binding
           protein 1-like [Pongo abelii]
          Length = 546

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 8/61 (13%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVF-LHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI      ++ +DVF +H++A+        L ++ +G+ V +D V+ 
Sbjct: 282 GTVKWFNVRNGYGFIN---RNDTKEDVFVVHQTAIKKNXPRRYLRSVGDGETVEFDVVEG 338

Query: 60  D 60
           +
Sbjct: 339 E 339


>gi|296198877|ref|XP_002746914.1| PREDICTED: protein lin-28 homolog B-like isoform 2 [Callithrix
          jacchus]
          Length = 257

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 39 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94


>gi|254453709|ref|ZP_05067146.1| cold shock DNA-binding domain protein [Octadecabacter antarcticus
          238]
 gi|198268115|gb|EDY92385.1| cold shock DNA-binding domain protein [Octadecabacter antarcticus
          238]
          Length = 177

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42
          V +G +KW++  KG+GFI    + E G D+ LH + + + G
Sbjct: 10 VMKGHVKWFDAGKGFGFIL---AQEGGADILLHANVLRNFG 47


>gi|87308022|ref|ZP_01090164.1| probable cold shock protein scoF [Blastopirellula marina DSM
          3645]
 gi|87289104|gb|EAQ80996.1| probable cold shock protein scoF [Blastopirellula marina DSM
          3645]
          Length = 65

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+IK    DKG+GFI   GS     D+F H  A+      +L EGQ VT+   Q      
Sbjct: 4  GTIKKLT-DKGFGFINTGGSK----DLFFHSKALQGVSFDDLHEGQNVTFTEAQGPKG-- 56

Query: 65 YSAENLK 71
            AEN++
Sbjct: 57 PCAENVR 63


>gi|195014627|ref|XP_001984048.1| GH16224 [Drosophila grimshawi]
 gi|193897530|gb|EDV96396.1| GH16224 [Drosophila grimshawi]
          Length = 142

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G +K ++  KG+GFITP G    G+DVF H S +   G +   EG  V Y
Sbjct: 57  GVVKSFSRTKGHGFITPNG---GGEDVFCHVSDI--EGEYVPMEGDEVKY 101


>gi|308497891|ref|XP_003111132.1| hypothetical protein CRE_03839 [Caenorhabditis remanei]
 gi|308240680|gb|EFO84632.1| hypothetical protein CRE_03839 [Caenorhabditis remanei]
          Length = 263

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 9/69 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KWY+  + YGFI+ E   +   DVF+H++A+A +      L  L + + V +D V+
Sbjct: 63  QGKVKWYSVLRRYGFISRE---DGEKDVFVHQTAIAKSATEKFYLRTLGDEEEVIFDLVE 119

Query: 59  NDANGKYSA 67
              NG  +A
Sbjct: 120 GK-NGPEAA 127


>gi|293345051|ref|XP_002725926.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 2 [Rattus
          norvegicus]
 gi|293356926|ref|XP_002729027.1| PREDICTED: lin-28 homolog B isoform 3 [Rattus norvegicus]
          Length = 247

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EG+  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 85


>gi|222480397|ref|YP_002566634.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
          ATCC 49239]
 gi|222453299|gb|ACM57564.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
          ATCC 49239]
          Length = 64

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +G + ++N   GYGFI    S ++ +DVF H   V      +L EGQ V +D
Sbjct: 3  KGKVDFFNDTGGYGFIE---SDDADEDVFFHMEDVGGP---DLEEGQEVEFD 48


>gi|284166114|ref|YP_003404393.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
 gi|284015769|gb|ADB61720.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
          Length = 65

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++ ++N   GYGFI+ E + E   DVF H   V      +L EG+ + +D  Q
Sbjct: 4  GNVDFFNDTGGYGFISTEDADE---DVFFHMEDVGGP---DLEEGEEIEFDIEQ 51


>gi|81428557|ref|YP_395557.1| cold shock protein CspA family protein [Lactobacillus sakei
          subsp. sakei 23K]
 gi|78610199|emb|CAI55248.1| Similar to cold shock protein, CspA family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 68

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW++  KGYGFI      E    +F+H +A+   G   L +   V ++ V+  A
Sbjct: 1  MERGIVKWFSNAKGYGFINYRDDEE----IFVHFTAIQIDGYKTLDKDDQVLFE-VKEGA 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 RGLQAANVQKI 66


>gi|242022944|ref|XP_002431897.1| calcium-regulated heat stable protein, putative [Pediculus
          humanus corporis]
 gi|212517238|gb|EEB19159.1| calcium-regulated heat stable protein, putative [Pediculus
          humanus corporis]
          Length = 132

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          + +G++K +  +KG+GFIT   S  +G+D+F+H S +
Sbjct: 47 IEKGTVKMFCREKGHGFIT---SNRTGEDIFVHISDI 80


>gi|117621225|ref|YP_857729.1| cold-shock protein, DNA-binding [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|117562632|gb|ABK39580.1| cold-shock protein, DNA-binding [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
          Length = 214

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITP-EGSTE-SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M ++G I  +N  +G+GFI P +G  E  G ++F+H SA+ S G      G+ V+Y  + 
Sbjct: 1  MRYQGRIVRWNEARGFGFIAPDQGDGEPKGAELFVHISALQSDGSLPKI-GERVSYQ-LG 58

Query: 59 NDANGKYSAENLKLV 73
          +  +GK  AE +  V
Sbjct: 59 SGQDGKPRAEQVFFV 73


>gi|309812365|ref|ZP_07706120.1| cold-shock DNA-binding domain protein [Dermacoccus sp. Ellin185]
 gi|308433670|gb|EFP57547.1| cold-shock DNA-binding domain protein [Dermacoccus sp. Ellin185]
          Length = 127

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 9/66 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K+Y+ +KG+GF+    S + G DVF+  SA+  AG+  L  G  + Y  V    +G+
Sbjct: 4  GKVKFYSAEKGFGFV----SGDDGVDVFVPASAL-PAGVSQLRGGMRIEYSVV----DGR 54

Query: 65 YSAENL 70
            A+ +
Sbjct: 55 KGAQAM 60


>gi|145284596|gb|ABP52045.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 26

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 4/30 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KG+GFI      +SG+DVF+H
Sbjct: 1  GMVKWFNDSKGFGFI----QRDSGEDVFVH 26


>gi|126310761|ref|XP_001378246.1| PREDICTED: similar to lin-28 homolog B (C. elegans), [Monodelphis
           domestica]
          Length = 266

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5   GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 48  GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLYMEGFRSLKEGEPVEFTF 103


>gi|83814543|ref|YP_446197.1| hypothetical protein SRU_2091 [Salinibacter ruber DSM 13855]
 gi|294508125|ref|YP_003572183.1| cold shock-like protein [Salinibacter ruber M8]
 gi|83755937|gb|ABC44050.1| conserved domain protein [Salinibacter ruber DSM 13855]
 gi|294344453|emb|CBH25231.1| putative cold shock-like protein [Salinibacter ruber M8]
          Length = 110

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55
          ++KW++  KGYGFI      + G+DVF+H S + S   F  L   Q V ++
Sbjct: 5  TVKWFDAKKGYGFI---HHPDDGEDVFVHYSNIQSDDDFKTLKSDQHVRFE 52


>gi|254494842|ref|ZP_01051872.2| 'cold-shock' DNA-binding protein [Polaribacter sp. MED152]
 gi|213690424|gb|EAQ41300.2| 'cold-shock' DNA-binding protein [Polaribacter sp. MED152]
          Length = 63

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 3/38 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39
          +++G++K++N  KG+GFIT EG+ +   + F+H S + 
Sbjct: 1  MNKGTVKFFNESKGFGFITEEGTNK---EHFVHVSGLV 35


>gi|116248187|sp|Q45KJ6|LN28B_MOUSE RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
          Length = 247

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EG+  +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 85


>gi|309774677|ref|ZP_07669701.1| cold-shock domain family protein [Erysipelotrichaceae bacterium
          3_1_53]
 gi|308917577|gb|EFP63293.1| cold-shock domain family protein [Erysipelotrichaceae bacterium
          3_1_53]
          Length = 86

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          VH G+  W++ +KGYGF+  +    S     +H + +   G   L  GQ VTY+ ++ +
Sbjct: 10 VH-GTCIWFSDEKGYGFLLSDDGVSS----MVHYTDIKEPGFKRLYRGQRVTYEELETE 63


>gi|299771405|ref|YP_003733431.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1]
 gi|298701493|gb|ADI92058.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1]
          Length = 97

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 14/72 (19%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ---NDA 61
          G +K Y+PDKG+GFI    ST  G D+F H S       F  +EG+    + V+    D 
Sbjct: 8  GKVKQYDPDKGFGFI----STTEG-DIFFHISD------FPASEGEPKRNEKVRFLAADN 56

Query: 62 NGKYSAENLKLV 73
           GK+ A  ++ +
Sbjct: 57 QGKFKAIKIERI 68


>gi|289581794|ref|YP_003480260.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
 gi|289531347|gb|ADD05698.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
          Length = 64

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++ ++N   GYGFI  E   ++ DDVF H   +      +L EGQ + ++  Q
Sbjct: 3  KGTVDFFNDTGGYGFIETE---DADDDVFFHMEDIGGP---DLEEGQELEFEIEQ 51


>gi|224367842|ref|YP_002602005.1| CspG [Desulfobacterium autotrophicum HRM2]
 gi|223690558|gb|ACN13841.1| CspG [Desulfobacterium autotrophicum HRM2]
          Length = 217

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          M+ RG+I  +N +KG+GFITP      G  +F H
Sbjct: 1  MLRRGNITLWNDEKGFGFITPNA---GGKQLFFH 31


>gi|149372203|ref|ZP_01891473.1| cold shock protein [unidentified eubacterium SCB49]
 gi|149354970|gb|EDM43532.1| cold shock protein [unidentified eubacterium SCB49]
          Length = 63

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G +K++N  KG+GFIT EG  +   D F+H S +       + EG  V ++    + 
Sbjct: 1  MNKGIVKFFNDSKGFGFITEEGQEK---DHFVHISGLIDE----VREGDEVEFEL--KEG 51

Query: 62 NGKYSAENLKLV 73
          N   +A N++++
Sbjct: 52 NKGLNAVNVRVL 63


>gi|86130475|ref|ZP_01049075.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
 gi|85819150|gb|EAQ40309.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
          Length = 64

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 9/55 (16%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV------ASAGLFNLTEGQ 50
          +H+G++K++N  KG+GFI  E   E+  + F+H + +        A  F L EG+
Sbjct: 1  MHKGTVKFFNETKGFGFINEE---EANQEHFVHVTGLIDEVREGDAVEFELKEGK 52


>gi|269957706|ref|YP_003327495.1| cold-shock DNA-binding domain-containing protein [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269306387|gb|ACZ31937.1| cold-shock DNA-binding domain protein [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 127

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 4/34 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G +KW++ ++G+GFI    + + G +VFLH SA+
Sbjct: 4  GKVKWFDSERGFGFI----AGDDGGEVFLHASAL 33


>gi|297520670|ref|ZP_06939056.1| major cold shock protein [Escherichia coli OP50]
          Length = 26

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/18 (66%), Positives = 16/18 (88%)

Query: 5  GSIKWYNPDKGYGFITPE 22
          G +KW+N DKG+GFITP+
Sbjct: 7  GIVKWFNADKGFGFITPD 24


>gi|258593069|emb|CBE69380.1| Cold shock protein, DNA binding [NC10 bacterium 'Dutch sediment']
          Length = 67

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  K +GFI  +   + G D F+H S V         E   V +D  Q+D  G
Sbjct: 2  KGKVKWFNVTKRFGFIVRD---DGGQDAFVHASDVEGGA--TPRENDDVEFDLGQDD-RG 55

Query: 64 KYSAENLKLV 73
          +  A  ++++
Sbjct: 56 RAKAVRVRIL 65


>gi|126734566|ref|ZP_01750312.1| cold shock protein [Roseobacter sp. CCS2]
 gi|126715121|gb|EBA11986.1| cold shock protein [Roseobacter sp. CCS2]
          Length = 151

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW++  +G+GF+  +G      D  LH++ +   G  ++ EG  V + Y Q+  NG   
Sbjct: 1  MKWFDAYRGFGFVVIDGIET---DFLLHQNILHGFGRTSIAEGSSVEFAY-QSTENGFKI 56

Query: 67 AENLKLVPKS 76
           E   + P S
Sbjct: 57 IEIFAIAPPS 66



 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +KW++P KGYGF+   G  E   D+F+  + +  + L +L  G  +     + +  
Sbjct: 89  VKWFDPSKGYGFVNAFGCAE---DIFVGAATLRKSMLGDLQSGDALCVQIAETEGR 141


>gi|291395012|ref|XP_002713966.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus]
          Length = 203

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GF++       + +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 36 GICKWFNVRMGFGFLSMTARAGVALDPLVDVFVHQSKLHMEGFRSLKEGEAVEFTF 91


>gi|114615287|ref|XP_510011.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
           troglodytes]
          Length = 379

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG---LFNLTEGQLVTYDYVQNDA 61
           G++KW+N   GYGFI      ++ +DVF+ ++A+ +     L ++ +G+ V +D V+ + 
Sbjct: 117 GTVKWFNVRNGYGFIN---RNDTKEDVFVPQTAIKNNPRKYLRSVGDGETVEFDVVEGEK 173

Query: 62  NGK 64
           + +
Sbjct: 174 DAE 176


>gi|297519352|ref|ZP_06937738.1| Cold shock-like protein cspC [Escherichia coli OP50]
          Length = 31

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFL 33
          +G +KW+N  KG+GFITP    +   DVF+
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFV 31


>gi|87307223|ref|ZP_01089368.1| probable cold shock protein scoF [Blastopirellula marina DSM
          3645]
 gi|87289963|gb|EAQ81852.1| probable cold shock protein scoF [Blastopirellula marina DSM
          3645]
          Length = 68

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G IK    DKG+GFI     T S  D+F H S++      +L EGQ V+  YV+  
Sbjct: 3  LMPEGKIKRLT-DKGFGFI----DTGSNKDLFFHMSSLEGCRYDDLREGQTVS--YVEGQ 55

Query: 61 ANGKYSAENLKLV 73
                AE ++++
Sbjct: 56 GPKGPRAEQVQVI 68


>gi|255531633|ref|YP_003092005.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366]
 gi|255344617|gb|ACU03943.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366]
          Length = 63

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 10/60 (16%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G++K++N  KG+GFI P     +GD ++F+H SA+++     + E   V+Y+ V+N   G
Sbjct: 4  GTVKFFNESKGFGFIIP----SNGDPELFVHASALSAP----VRENDRVSYE-VENGKKG 54


>gi|222479737|ref|YP_002565974.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
          ATCC 49239]
 gi|222452639|gb|ACM56904.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
          ATCC 49239]
          Length = 64

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G + ++N   GYGFI    + ++ DDVF H   V      +L EGQ V ++  ++D
Sbjct: 4  GKVDFFNDTGGYGFIE---TDDADDDVFFHMEDVGGP---DLEEGQEVEFEIEESD 53


>gi|293609127|ref|ZP_06691430.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829700|gb|EFF88062.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 97

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 16/73 (21%)

Query: 5  GSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ---ND 60
          G +K YNPDKG+GFI T EG      D+F H S       F  +EG+    + V+    D
Sbjct: 8  GWVKQYNPDKGFGFIETTEG------DIFFHISD------FPASEGEPKRNEKVRFLAAD 55

Query: 61 ANGKYSAENLKLV 73
            GK+ A  ++ V
Sbjct: 56 NQGKFKAIKIERV 68


>gi|30089118|emb|CAD27800.1| Y1 protein [Dugesia etrusca]
          Length = 280

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQND 60
          G +KW+N   GYGFI      ++ +D+F+H++A+          ++ +G+ V +D V+ +
Sbjct: 32 GKVKWFNVKSGYGFIN---RNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGE 88


>gi|134101948|ref|YP_001107609.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL
          2338]
 gi|291007041|ref|ZP_06565014.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL
          2338]
 gi|133914571|emb|CAM04684.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL
          2338]
          Length = 150

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++  ++  KGYGFI P+     G+DVFLH S +       L  G  V ++ V  +   K
Sbjct: 4  GTVVRFDGIKGYGFIAPDA---GGEDVFLHASILDEELKEVLRGGMRVEFEAVPGNQGTK 60

Query: 65 YSAENL 70
              NL
Sbjct: 61 AMTVNL 66


>gi|261822120|ref|YP_003260226.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
 gi|261606133|gb|ACX88619.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
          Length = 160

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+I  +  DKG+GFI      E+GD+ + H   VA+  L  + +   VT++   N 
Sbjct: 1  MAMNGTITTWFKDKGFGFI----KDENGDNRYFHVIKVANPDL--IKKDAAVTFEPTTN- 53

Query: 61 ANGKYSAENLKLVPKS 76
           N   SA  +K+VP+S
Sbjct: 54 -NKGLSAYAVKVVPES 68


>gi|157093143|gb|ABV22226.1| cold shock protein-like [Karlodinium micrum]
 gi|157093145|gb|ABV22227.1| cold shock protein-like [Karlodinium micrum]
          Length = 210

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           ++G IK +   KGYGFIT +     G D+F  +S V+   L  L+  Q  T+     D  
Sbjct: 73  YKGRIKSFVQQKGYGFITCDAL--QGQDIFFMKSDVSERALPILSANQDCTFTLHLGDRG 130

Query: 63  GKYSAENLKLVPKSSN 78
            +  A+++ LV  + N
Sbjct: 131 PQ--AKDITLVGAAGN 144


>gi|50120514|ref|YP_049681.1| putative cold-shock protein [Pectobacterium atrosepticum
          SCRI1043]
 gi|49611040|emb|CAG74485.1| putative cold-shock protein [Pectobacterium atrosepticum
          SCRI1043]
          Length = 160

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+I  +  DKG+GFI      E+GD+ + H   VA+  L  + +   VT++   N 
Sbjct: 1  MAMNGTITTWFKDKGFGFI----KDENGDNRYFHVIKVANPDL--IKKDAAVTFEPTTN- 53

Query: 61 ANGKYSAENLKLVPKS 76
           N   SA  +K+VP+S
Sbjct: 54 -NKGLSAYAVKVVPES 68


>gi|268592402|ref|ZP_06126623.1| putative cold-shock protein [Providencia rettgeri DSM 1131]
 gi|291312188|gb|EFE52641.1| putative cold-shock protein [Providencia rettgeri DSM 1131]
          Length = 160

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+I  +  DKG+GFI      E+GD+ + H   VA+  L  + +   VT++   N 
Sbjct: 1  MAMNGTITTWFEDKGFGFI----KDENGDNRYFHVVKVANPDL--IKKNAAVTFEPTTN- 53

Query: 61 ANGKYSAENLKLVPKS 76
           N   SA  +K++P+S
Sbjct: 54 -NKGLSAFAVKVIPES 68


>gi|313674903|ref|YP_004052899.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM
          4126]
 gi|312941601|gb|ADR20791.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM
          4126]
          Length = 63

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFI  E + +   D F+H S +      ++ E   V Y+    D 
Sbjct: 1  MNKGTVKFFNDSKGFGFIIDESTQQ---DYFVHVSGLID----DIRENDEVVYEL--QDG 51

Query: 62 NGKYSAENLKL 72
              +A N+KL
Sbjct: 52 KKGLNAVNVKL 62


>gi|297469975|ref|XP_602127.4| PREDICTED: cold shock domain protein A short-like [Bos taurus]
 gi|297493214|ref|XP_002700207.1| PREDICTED: cold shock domain protein A short-like [Bos taurus]
 gi|296470657|gb|DAA12772.1| cold shock domain protein A short-like [Bos taurus]
          Length = 370

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQND 60
           G++ W+   KGYGFI    + E   DVF+H +A+          ++ +G+ V +D VQ +
Sbjct: 70  GTVVWFKDKKGYGFIRRHDTQE---DVFVHHTAITGETPCKYRGSVDDGETVEFDVVQGE 126


>gi|311748237|ref|ZP_07722022.1| cold shock protein [Algoriphagus sp. PR1]
 gi|126576729|gb|EAZ80977.1| cold shock protein [Algoriphagus sp. PR1]
          Length = 63

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 7/51 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++K+YN  KG+GFI  +   E+  D+F+H + +       + +   VTYD
Sbjct: 4  GTVKFYNDAKGFGFIVDD---ETQSDIFVHATGLVD----KVAQNDKVTYD 47


>gi|88855543|ref|ZP_01130207.1| hypothetical protein A20C1_01931 [marine actinobacterium PHSC20C1]
 gi|88815450|gb|EAR25308.1| hypothetical protein A20C1_01931 [marine actinobacterium PHSC20C1]
          Length = 246

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS+  +N ++G+GFIT     ESGD +F H SA         T  + V++  V++ ++GK
Sbjct: 40  GSLASWNDERGFGFIT----LESGDRIFAHISAFPPRDA-RPTLDERVSF-AVEHTSDGK 93

Query: 65  YSAENLK 71
             A N++
Sbjct: 94  VRARNIR 100


>gi|73540243|ref|YP_294763.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72117656|gb|AAZ59919.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 195

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36
          G++K +N DKG+GFI P   +  G D+F+H S
Sbjct: 14 GTLKSWNKDKGFGFIAP---SNGGRDIFVHIS 42


>gi|188026432|ref|ZP_02962051.2| hypothetical protein PROSTU_04144 [Providencia stuartii ATCC
          25827]
 gi|188019835|gb|EDU57875.1| hypothetical protein PROSTU_04144 [Providencia stuartii ATCC
          25827]
          Length = 174

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+I  +  DKG+GFI      E+GD+ + H   VA+  L  + +   VT++   N 
Sbjct: 16 MAMNGTITTWFEDKGFGFI----KDENGDNRYFHVIKVANPDL--IKKNAAVTFEPTTN- 68

Query: 61 ANGKYSAENLKLVPKS 76
           N   SA  +K++P+S
Sbjct: 69 -NKGLSAYAVKVIPES 83


>gi|157121173|ref|XP_001659860.1| hypothetical protein AaeL_AAEL009235 [Aedes aegypti]
 gi|108874689|gb|EAT38914.1| conserved hypothetical protein [Aedes aegypti]
          Length = 159

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           +  G +K ++  KG+GFI+P   T  GDD+F+H S +   G +    G  V+Y
Sbjct: 64  IEEGKVKSFSRSKGHGFISP---TAGGDDIFVHISDI--EGEYVPLPGDEVSY 111


>gi|229819345|ref|YP_002880871.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
          12333]
 gi|229565258|gb|ACQ79109.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
          12333]
          Length = 127

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 4/36 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
          G +K+++ D+G+GFI    + + G +VFLH SA+ +
Sbjct: 4  GKVKFFDADRGFGFI----AADDGGEVFLHASALPA 35


>gi|16125636|ref|NP_420200.1| cold-shock domain-contain protein [Caulobacter crescentus CB15]
 gi|13422744|gb|AAK23368.1| cold-shock domain family protein [Caulobacter crescentus CB15]
          Length = 64

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +KW+N  KGYGF+  +   E G D+F+H   +   GL +L  G  V   + +
Sbjct: 1  MKWFNRTKGYGFVIRD--AEPG-DIFVHIETLRRGGLEDLQPGDDVLVRFAR 49


>gi|255037756|ref|YP_003088377.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
          fermentans DSM 18053]
 gi|254950512|gb|ACT95212.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
          18053]
          Length = 64

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G++K++N  KGYGFI  +   ++  D+F+H   V   G   + E   V Y+ V+
Sbjct: 4  GTVKFFNEAKGYGFIVED---DTKKDIFVH---VTGLGGLTIRENDQVEYEVVE 51


>gi|320158020|ref|YP_004190398.1| membrane protein [Vibrio vulnificus MO6-24/O]
 gi|319933332|gb|ADV88195.1| membrane protein [Vibrio vulnificus MO6-24/O]
          Length = 198

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G I  +N +KGYGFI+  G       VF H S+V + G +       VT++ V  D
Sbjct: 1  MAIKGQIIEWNDEKGYGFISAIGGEL---KVFFHISSVTNRG-YRPKIKDNVTFN-VAED 55

Query: 61 ANGKYSAENL 70
            G+++AEN+
Sbjct: 56 KKGRFNAENV 65


>gi|317491867|ref|ZP_07950302.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920301|gb|EFV41625.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 160

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+I  +  DKG+GFI      E+GD+ + H   VA+  L  + +   VT++   N 
Sbjct: 1  MAMNGTITTWFKDKGFGFI----KDENGDNRYFHVIKVANPDL--IKKDAAVTFEPTTN- 53

Query: 61 ANGKYSAENLKLVPKS 76
           N   SA  +K++P+S
Sbjct: 54 -NKGLSAYAVKVIPES 68


>gi|332293443|ref|YP_004432052.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332171529|gb|AEE20784.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 64

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 9/55 (16%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV------ASAGLFNLTEGQ 50
          +H+G++K++N  KG+GFI  E   E+  + F+H + +        A  F L EG+
Sbjct: 1  MHKGTVKFFNDTKGFGFINEE---EANQEHFVHVTGLIDEVREGDAVEFELKEGK 52


>gi|312891332|ref|ZP_07750850.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
          DSM 18603]
 gi|311296193|gb|EFQ73344.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
          DSM 18603]
          Length = 63

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 13/74 (17%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFN-LTEGQLVTYDYVQN 59
          +  G++K++N  KG+GFI P     +GD ++F+H     S+GL + + E   V Y+ V+ 
Sbjct: 1  MQSGTVKFFNETKGFGFIVP----SNGDSEIFVH-----SSGLIDQIRENDSVNYE-VER 50

Query: 60 DANGKYSAENLKLV 73
             G ++A N+K+V
Sbjct: 51 GKKG-FNAVNVKVV 63


>gi|37675872|ref|NP_936268.1| hypothetical protein VVA0212 [Vibrio vulnificus YJ016]
 gi|37200411|dbj|BAC96238.1| predicted membrane protein [Vibrio vulnificus YJ016]
          Length = 198

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G I  +N +KGYGFI+  G       VF H S+V + G +       VT++ V  D
Sbjct: 1  MAIKGQIIEWNDEKGYGFISAIGGEL---KVFFHISSVTNRG-YRPKIKDNVTFN-VAED 55

Query: 61 ANGKYSAENL 70
            G+++AEN+
Sbjct: 56 KKGRFNAENV 65


>gi|167847488|ref|ZP_02472996.1| cold-shock domain family protein [Burkholderia pseudomallei
          B7210]
          Length = 78

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
          +GFITPEG    G+D+F H S +   G   L E Q V ++ V+    G   A N+K
Sbjct: 26 FGFITPEGG---GEDLFAHFSEIRVDGFKTLQENQKVEFE-VKTGPKG-LQAANIK 76


>gi|326381637|ref|ZP_08203331.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
          NRRL B-59395]
 gi|326199884|gb|EGD57064.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
          NRRL B-59395]
          Length = 161

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 10/78 (12%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN--LTEGQLVTYDYVQ 58
          M   G +  ++ ++G+GF+ P    E GDDVFLH   +   G+    L  G  V +D   
Sbjct: 1  MAVNGKVVHFDTNRGFGFLAP---AEGGDDVFLH---INDVGIDESLLRPGAEVEFDVES 54

Query: 59 NDANGKYSAENLKLVPKS 76
           D   K  A N+K+  ++
Sbjct: 55 TDRGAK--ALNVKVTKEA 70


>gi|27367741|ref|NP_763268.1| membrane protein [Vibrio vulnificus CMCP6]
 gi|27359314|gb|AAO08258.1| membrane protein [Vibrio vulnificus CMCP6]
          Length = 198

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G I  +N +KGYGFI+  G       VF H S+V + G +       VT++ V  D
Sbjct: 1  MAIKGQIIEWNDEKGYGFISAIGGEL---KVFFHISSVTNRG-YRPKIKDNVTFN-VAED 55

Query: 61 ANGKYSAENL 70
            G+++AEN+
Sbjct: 56 KKGRFNAENV 65


>gi|292656120|ref|YP_003536017.1| cold shock protein [Haloferax volcanii DS2]
 gi|291371726|gb|ADE03953.1| cold shock protein [Haloferax volcanii DS2]
          Length = 64

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +G++ ++N   GYGFI+   + ++ DDVF H   +      +L EG  V +D  Q
Sbjct: 3  KGNVDFFNDTGGYGFIS---TDDADDDVFFHMEDIGGP---DLEEGTDVEFDIEQ 51


>gi|110638737|ref|YP_678946.1| cold-shock DNA-binding protein family protein [Cytophaga
          hutchinsonii ATCC 33406]
 gi|110281418|gb|ABG59604.1| cold-shock DNA-binding protein family [Cytophaga hutchinsonii
          ATCC 33406]
          Length = 63

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K++N  KG+GFI  +   ESG + F+H S +       + E   VT++  +   
Sbjct: 1  MNNGTVKFFNNSKGFGFIIEK---ESGKEYFVHVSGLVDE----IRENDEVTFELEKGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N+KLV
Sbjct: 54 G--LNAVNVKLV 63


>gi|41056167|ref|NP_956856.1| calcium-regulated heat stable protein 1 [Danio rerio]
 gi|33989487|gb|AAH56576.1| Calcium regulated heat stable protein 1 [Danio rerio]
          Length = 155

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           V  G  K ++  KG+GFITP   ++ G+D+F+H S +   G +   EG  V Y   
Sbjct: 70  VFSGVCKCFSRSKGHGFITP---SDGGNDIFVHISDI--DGEYVPVEGDEVCYKIC 120


>gi|89514265|gb|ABD74995.1| putative cold shock transcription regulator protein
          [Sinorhizobium kostiense]
          Length = 29

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFL 33
          +  G++K++N DKG+GFI PE     G D+F+
Sbjct: 1  METGTVKFFNTDKGFGFIKPE---NGGADIFV 29


>gi|327280107|ref|XP_003224795.1| PREDICTED: calcium-regulated heat stable protein 1-like [Anolis
           carolinensis]
          Length = 149

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
            ++G  K ++  KG+GFITPE   E G DVF+H S +   G +    G  +TY
Sbjct: 62  TYKGVCKCFSRAKGHGFITPE---EGGLDVFVHISDI--EGEYVPVAGDEMTY 109


>gi|145284586|gb|ABP52040.1| cold shock protein [Psychrobacter sp. BJ3]
 gi|145284602|gb|ABP52048.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 27

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G++KW+N  KG+GFI  +     G DVF+H
Sbjct: 1  GTVKWFNEAKGFGFIAQD---NGGQDVFVH 27


>gi|260808771|ref|XP_002599180.1| hypothetical protein BRAFLDRAFT_197924 [Branchiostoma floridae]
 gi|229284457|gb|EEN55192.1| hypothetical protein BRAFLDRAFT_197924 [Branchiostoma floridae]
          Length = 121

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG +K +   KG+GFI P    +  DD+F+H S +   G + L +G  VTY
Sbjct: 45 RGIVKNFCRQKGHGFIKPH---DGSDDIFVHISDI--DGEYVLKDGDEVTY 90


>gi|158294527|ref|XP_315660.4| AGAP005641-PA [Anopheles gambiae str. PEST]
 gi|157015604|gb|EAA11357.4| AGAP005641-PA [Anopheles gambiae str. PEST]
          Length = 157

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
           +  G +K ++  KG+GFITP      GDD+F+H S +
Sbjct: 67  IEEGKVKSFSRSKGHGFITPNA---GGDDIFVHISDI 100


>gi|116492939|ref|YP_804674.1| cold-shock DNA-binding protein family protein [Pediococcus
          pentosaceus ATCC 25745]
 gi|116103089|gb|ABJ68232.1| cold-shock DNA-binding protein family [Pediococcus pentosaceus
          ATCC 25745]
          Length = 69

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          +  G+++ ++ +KGYGFI     T SGD VF H + + S     L  G+ V
Sbjct: 1  METGTVESFDKEKGYGFI----ETASGDKVFAHYTVIQSEDYKTLEVGEKV 47


>gi|308176351|ref|YP_003915757.1| cold shock protein [Arthrobacter arilaitensis Re117]
 gi|307743814|emb|CBT74786.1| putative cold shock protein [Arthrobacter arilaitensis Re117]
          Length = 127

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY   KG+GFIT     E G +++++ +A+   G+ +L  G  + +      A G+
Sbjct: 4  GKVKWYEKAKGFGFIT----AEDGKEIYVNAAALPE-GVHDLRPGTRLEFGV----AEGR 54

Query: 65 YSAENLKL 72
             + L L
Sbjct: 55 RGPQALSL 62


>gi|283783195|ref|YP_003373949.1| cold-shock DNA-binding domain protein [Gardnerella vaginalis
          409-05]
 gi|283441802|gb|ADB14268.1| cold-shock DNA-binding domain protein [Gardnerella vaginalis
          409-05]
          Length = 129

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G ++WY+  KGYGFI      + G DVFL  +A+    + +L +G  V +  ++
Sbjct: 4  GRVRWYDTQKGYGFIV----GDDGKDVFLPAAAL-PVTVKSLHKGTRVEFSVIE 52


>gi|308498439|ref|XP_003111406.1| hypothetical protein CRE_03641 [Caenorhabditis remanei]
 gi|308240954|gb|EFO84906.1| hypothetical protein CRE_03641 [Caenorhabditis remanei]
          Length = 264

 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 9/69 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KWY+  + YGFI+ +   +   DVF+H++A+A +      L  L + + V +D V+
Sbjct: 63  QGKVKWYSVLRRYGFISRD---DGEKDVFVHQTAIAKSDTEKFYLRTLADEEEVLFDLVE 119

Query: 59  NDANGKYSA 67
              NG  +A
Sbjct: 120 GK-NGPEAA 127


>gi|227114570|ref|ZP_03828226.1| putative cold-shock protein [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
          Length = 160

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+I  +  DKG+GFI      E+GD+ + H   VA+  L  + +   VT++   N 
Sbjct: 1  MAMNGTITTWFKDKGFGFI----KDENGDNRYFHVIKVANPDL--IKKDAEVTFEPTTN- 53

Query: 61 ANGKYSAENLKLVPKS 76
           N   SA  +K+VP+S
Sbjct: 54 -NKGLSAYAVKVVPES 68


>gi|82702034|ref|YP_411600.1| putative sigma 54 modulation protein/ribosomal protein S30EA
           [Nitrosospira multiformis ATCC 25196]
 gi|82410099|gb|ABB74208.1| putative sigma 54 modulation protein/ribosomal protein S30EA
           [Nitrosospira multiformis ATCC 25196]
          Length = 195

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G +    P++GYGF+     T SG +++ HR  +A+     L EG  V +
Sbjct: 114 GKVVRLMPEEGYGFV----ETSSGQELYFHRENLANNNFEQLEEGSEVQF 159


>gi|313225295|emb|CBY06769.1| unnamed protein product [Oikopleura dioica]
          Length = 834

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI  +       +VF H + +    + +L  G +V +  + N  +G   A  ++LV K
Sbjct: 676 YGFINYQEGEGDSKNVFFHATNLIEVSIADLGVGDIVKFSVIHNKRSGNTCAAGIRLVKK 735

Query: 76  SS 77
           ++
Sbjct: 736 AA 737


>gi|297243561|ref|ZP_06927492.1| cold shock protein [Gardnerella vaginalis AMD]
 gi|296888312|gb|EFH27053.1| cold shock protein [Gardnerella vaginalis AMD]
          Length = 129

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          G ++WY+  KGYGFI      + G DVFL  +A+    +  L +G  V +  ++
Sbjct: 4  GRVRWYDTQKGYGFIV----GDDGKDVFLPAAAL-PVTVKTLHKGTRVEFSVIE 52


>gi|222624666|gb|EEE58798.1| hypothetical protein OsJ_10341 [Oryza sativa Japonica Group]
          Length = 233

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 27/35 (77%), Gaps = 3/35 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          +G++K ++   G+GFITP+   + G+D+F+H+S++
Sbjct: 7  KGTVKGFDATNGFGFITPD---DDGEDLFIHQSSL 38


>gi|26344984|dbj|BAC36141.1| unnamed protein product [Mus musculus]
          Length = 361

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYD 55
           G++KW+N   GYGFI      ++ +D F+H++ +        L ++ +G+ V +D
Sbjct: 85  GTVKWFNVRNGYGFIN---RNDTKEDAFVHQTVIKKNNPRKYLRSVGDGETVEFD 136


>gi|47216902|emb|CAG02074.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 151

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           V  G  K ++  KG+GFITP   ++ G D+F+H S +   G +   EG  V+Y
Sbjct: 67  VFTGVCKCFSRSKGHGFITP---SDGGKDIFVHISDI--EGEYVPIEGDEVSY 114


>gi|85703578|ref|ZP_01034682.1| cold shock DNA-binding domain protein [Roseovarius sp. 217]
 gi|85672506|gb|EAQ27363.1| cold shock DNA-binding domain protein [Roseovarius sp. 217]
          Length = 151

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  KG+GF    G  E   DVF+H   +  +GL ++  G+ +    + +   G+ +
Sbjct: 82  VKWFDKGKGFGFANTFGREE---DVFVHVEVLRRSGLADVQPGEALAIRVI-DGKRGRMA 137

Query: 67  AE 68
            E
Sbjct: 138 TE 139


>gi|195376475|ref|XP_002047022.1| GJ13199 [Drosophila virilis]
 gi|194154180|gb|EDW69364.1| GJ13199 [Drosophila virilis]
          Length = 142

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 3/34 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G +K ++  KG+GFITP G    G+DVF H S +
Sbjct: 57 GVVKSFSRTKGHGFITPHG---GGEDVFCHVSDI 87


>gi|223992615|ref|XP_002285991.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977306|gb|EED95632.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 50

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42
          G++KWYN ++G+GFI  +   + G D+++H + +   G
Sbjct: 3  GTVKWYNAERGFGFIAID---DGGADMYVHATGLTFDG 37


>gi|224070003|ref|XP_002194726.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 152

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           +++G  K +   KG+GFITP    + G D+F+H S +   G +    G  VTY   
Sbjct: 67  IYKGVCKCFCRSKGHGFITP---ADGGPDIFVHISDI--EGEYVPVAGDEVTYKMC 117


>gi|330876787|gb|EGH10936.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 24

 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 17/18 (94%)

Query: 5  GSIKWYNPDKGYGFITPE 22
          G++KW+N +KG+GFITP+
Sbjct: 7  GTVKWFNDEKGFGFITPQ 24


>gi|240170464|ref|ZP_04749123.1| cold-shock DNA-binding protein family protein [Mycobacterium
          kansasii ATCC 12478]
          Length = 99

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          V  G I W++ ++G+GF+ P    +   DVF+  S +       + EGQ V+Y
Sbjct: 33 VSYGVINWFDDERGFGFVHP---ADGDRDVFIDSSEIVDWPAGGVHEGQHVSY 82


>gi|315126645|ref|YP_004068648.1| cold shock DNA-binding domain-containing protein
          [Pseudoalteromonas sp. SM9913]
 gi|315015159|gb|ADT68497.1| cold shock DNA-binding domain-containing protein
          [Pseudoalteromonas sp. SM9913]
          Length = 192

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G +K +N +KG+GFI    ST    D F+H S++          G ++ ++ V  D 
Sbjct: 1  MNKGLLKSWNDEKGFGFIK---STTLQHDTFIHISSLKHMSR-KPKVGDIIYFE-VATDP 55

Query: 62 NGKYSAENLKL 72
          NGK  A N ++
Sbjct: 56 NGKTKAVNCRI 66


>gi|188587465|ref|YP_001919010.1| transcription termination factor Rho [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179352152|gb|ACB86422.1| transcription termination factor Rho [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 414

 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
           PD GYGF+ P+G T   +D+++  S +     F L  G LV+        N KY A
Sbjct: 59  PD-GYGFLRPDGYTPGSNDIYISASQIKR---FGLKTGDLVSGKVRPPKDNEKYMA 110


>gi|145284584|gb|ABP52039.1| cold shock protein [Psychrobacter sp. BJ3]
          Length = 27

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KG+GFI  +     G DVF+H
Sbjct: 1  GQVKWFNEAKGFGFIAQD---NGGQDVFVH 27


>gi|298209155|ref|YP_003717334.1| cold shock protein, putative DNA-binding protein [Croceibacter
          atlanticus HTCC2559]
 gi|83849082|gb|EAP86951.1| cold shock protein, putative DNA-binding protein [Croceibacter
          atlanticus HTCC2559]
          Length = 63

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 7/51 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G +K++N  KG+GFIT    +E+ ++ F+H S +       ++EG  V +D
Sbjct: 4  GRVKFFNDTKGFGFITD---SETSEEYFVHVSGLID----RISEGDHVAFD 47


>gi|212711744|ref|ZP_03319872.1| hypothetical protein PROVALCAL_02819 [Providencia alcalifaciens
          DSM 30120]
 gi|212685846|gb|EEB45374.1| hypothetical protein PROVALCAL_02819 [Providencia alcalifaciens
          DSM 30120]
          Length = 160

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+I  +  DKG+GF+      E+GD+ + H   VA+  L  + +G  VT++   N  N  
Sbjct: 3  GTITTWFEDKGFGFL----KDENGDNRYFHVIKVANPDL--IKKGAEVTFEPTTN--NKG 54

Query: 65 YSAENLKLVPKS 76
           SA  +K++P+S
Sbjct: 55 LSAFAVKVIPES 66


>gi|332306019|ref|YP_004433870.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|332173348|gb|AEE22602.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 236

 Score = 33.9 bits (76), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G I  +N DKG+GF+ P G    G+  F+H  A        + +G ++ Y+ V+ D
Sbjct: 1  MRFQGKIFNWNDDKGFGFVEPNG---GGERAFVHIKAFNPRSRRPI-DGDIIIYELVRED 56

Query: 61 ANGKYSAENLKL 72
           N +  A N++ 
Sbjct: 57 -NHRAKAINIQF 67


>gi|157376410|ref|YP_001475010.1| hypothetical protein Ssed_3278 [Shewanella sediminis HAW-EB3]
 gi|157318784|gb|ABV37882.1| hypothetical protein Ssed_3278 [Shewanella sediminis HAW-EB3]
          Length = 274

 Score = 33.9 bits (76), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 4  RGSIKWYNPDKGYGFITPE--GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +G++  +  DKG+GFI PE    T+S  D+F+H S +       L EG  + +  +++  
Sbjct: 7  KGTLVRWKDDKGFGFIEPETGSGTDSHTDIFIHVSQLRHMSRRPL-EGDTIFFQ-IEHKP 64

Query: 62 NGKYSAENLKL 72
           GK +A   ++
Sbjct: 65 GGKLNAIEARI 75


>gi|224134074|ref|XP_002327749.1| predicted protein [Populus trichocarpa]
 gi|222836834|gb|EEE75227.1| predicted protein [Populus trichocarpa]
          Length = 235

 Score = 33.5 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 8/65 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDAN 62
          G +  ++  KG+GFI P    ++GD D+F+H SA+ S G +  L E  +V +  + ND  
Sbjct: 16 GRVVRFSDKKGFGFIKP----DAGDKDLFVHHSAIKSDGGYRTLYEDDVVEFTILLND-- 69

Query: 63 GKYSA 67
           KY A
Sbjct: 70 DKYQA 74


>gi|194216294|ref|XP_001503975.2| PREDICTED: similar to lin-28 homolog B (C. elegans) isoform 2
          [Equus caballus]
          Length = 257

 Score = 33.5 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          G  KW+N   G+GFI+    EG   +   DVF+H+S +   G  +L EG+ V + +
Sbjct: 39 GHCKWFNVRMGFGFISMISREGRPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94


>gi|145284594|gb|ABP52044.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 27

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KG+GFI  +     G DVF+H
Sbjct: 1  GKVKWFNEAKGFGFIAQD---NGGQDVFVH 27


>gi|91094659|ref|XP_972255.1| PREDICTED: similar to CG9705 CG9705-PA [Tribolium castaneum]
 gi|270016464|gb|EFA12910.1| hypothetical protein TcasGA2_TC006980 [Tribolium castaneum]
          Length = 121

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          G IK +  +KG+GFITPE  +E   D+F+H S +
Sbjct: 44 GEIKSFCREKGHGFITPEDGSE---DIFVHISDI 74


>gi|268566689|ref|XP_002639788.1| Hypothetical protein CBG02238 [Caenorhabditis briggsae]
 gi|187037584|emb|CAP23334.1| hypothetical protein CBG_02238 [Caenorhabditis briggsae AF16]
          Length = 263

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYV 57
           +G +KWY+  + YGFI+     +   DVF+H++A+A +      L  L + + V +D V
Sbjct: 62  QGKVKWYSVLRRYGFIS---RNDGEKDVFVHQTAIAKSLTEKFYLRTLGDEEEVLFDLV 117


>gi|124008225|ref|ZP_01692922.1| conserved domain protein [Microscilla marina ATCC 23134]
 gi|123986324|gb|EAY26146.1| conserved domain protein [Microscilla marina ATCC 23134]
          Length = 64

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 7/51 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++K++N  KG+GFIT +GS +   + F H S +      ++ EG  V ++
Sbjct: 4  GTVKFFNESKGFGFITEDGSNK---EYFTHVSGLVD----DIREGDEVEFE 47


>gi|28493015|ref|NP_787176.1| cold shock protein B [Tropheryma whipplei str. Twist]
 gi|28572227|ref|NP_789007.1| cold shock protein B [Tropheryma whipplei TW08/27]
 gi|28410358|emb|CAD66744.1| cold shock protein B [Tropheryma whipplei TW08/27]
 gi|28476055|gb|AAO44145.1| cold shock protein B [Tropheryma whipplei str. Twist]
          Length = 125

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++++YN ++G+GF+     ++ G+ VFL   A+   G+ +L+ G  V Y      A GK
Sbjct: 4  GTVRFYNKERGFGFVV----SDDGESVFLPAKALPD-GVSDLSPGTRVDY----GAALGK 54

Query: 65 YSAENLKL 72
            ++ L L
Sbjct: 55 KGSQVLSL 62


Searching..................................................done


Results from round 2




>gi|254780913|ref|YP_003065326.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040590|gb|ACT57386.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 78

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND
Sbjct: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60

Query: 61 ANGKYSAENLKLVPKSSN 78
          ANGKYSAENLKLVPKSSN
Sbjct: 61 ANGKYSAENLKLVPKSSN 78


>gi|237815887|ref|ZP_04594884.1| cold-shock family protein [Brucella abortus str. 2308 A]
 gi|237789185|gb|EEP63396.1| cold-shock family protein [Brucella abortus str. 2308 A]
          Length = 110

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  
Sbjct: 42  MATGTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 98

Query: 62  NGKYSAENL 70
           +G+ SA+NL
Sbjct: 99  SGRSSADNL 107


>gi|239832368|ref|ZP_04680697.1| cold-shock family protein [Ochrobactrum intermedium LMG 3301]
 gi|239824635|gb|EEQ96203.1| cold-shock family protein [Ochrobactrum intermedium LMG 3301]
          Length = 110

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  
Sbjct: 42  MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLATLDEGQKVSYEIVQDRR 98

Query: 62  NGKYSAENL 70
           +G+ SA+NL
Sbjct: 99  SGRSSADNL 107


>gi|82700304|ref|YP_414878.1| cold shock DNA-binding domain-containing protein [Brucella
          melitensis biovar Abortus 2308]
 gi|297248768|ref|ZP_06932486.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
          bv. 5 str. B3196]
 gi|82616405|emb|CAJ11468.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus
          2308]
 gi|297175937|gb|EFH35284.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
          bv. 5 str. B3196]
          Length = 101

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  
Sbjct: 33 MATGTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 89

Query: 62 NGKYSAENL 70
          +G+ SA+NL
Sbjct: 90 SGRSSADNL 98


>gi|17986801|ref|NP_539435.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M]
 gi|17982433|gb|AAL51699.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M]
          Length = 101

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  
Sbjct: 33 MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 89

Query: 62 NGKYSAENL 70
          +G+ SA+NL
Sbjct: 90 SGRSSADNL 98


>gi|148559048|ref|YP_001259374.1| cold-shock family protein [Brucella ovis ATCC 25840]
 gi|148370305|gb|ABQ60284.1| cold-shock family protein [Brucella ovis ATCC 25840]
          Length = 105

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 3/66 (4%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  
Sbjct: 42  MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 98

Query: 62  NGKYSA 67
           +G+ SA
Sbjct: 99  SGRSSA 104


>gi|158424300|ref|YP_001525592.1| cold shock DNA-binding domain-containing protein [Azorhizobium
           caulinodans ORS 571]
 gi|158331189|dbj|BAF88674.1| cold-shock DNA-binding domain [Azorhizobium caulinodans ORS 571]
          Length = 117

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++KW+NP+KG+GFI P+   + G D F+H SAV  AGL  L EGQ V YD V +  
Sbjct: 48  MTTGTVKWFNPEKGFGFIAPD---DGGADAFVHISAVERAGLPPLREGQKVNYDLVADKR 104

Query: 62  NGKYSAENLKLVP 74
           +GK SA NL LVP
Sbjct: 105 SGKSSASNLTLVP 117


>gi|332715879|ref|YP_004443345.1| cold shock-like protein cspA [Agrobacterium sp. H13-3]
 gi|325062564|gb|ADY66254.1| cold shock-like protein cspA [Agrobacterium sp. H13-3]
          Length = 69

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+     G DVF+H SAV  AGL +L +GQ +TYD VQ+  
Sbjct: 1  MNTGTVKWFNATKGFGFIQPD---NGGTDVFVHISAVERAGLRSLNDGQKITYDIVQDRK 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKSSADNLR 67


>gi|254702210|ref|ZP_05164038.1| cold shock protein CSPA [Brucella suis bv. 5 str. 513]
 gi|261752785|ref|ZP_05996494.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 5 str. 513]
 gi|261742538|gb|EEY30464.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 5 str. 513]
          Length = 69

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  
Sbjct: 1  MATGTVKWFNATKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 57

Query: 62 NGKYSAENL 70
          +G+ SA+NL
Sbjct: 58 SGRSSADNL 66


>gi|159185613|ref|NP_357478.2| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|159140747|gb|AAK90263.2| cold shock protein [Agrobacterium tumefaciens str. C58]
          Length = 69

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+     G DVF+H SAV  AG+ +L +GQ ++Y+ VQ+  
Sbjct: 1  MNTGTVKWFNATKGFGFIQPD---NGGTDVFVHISAVERAGMRSLNDGQKISYEIVQDRR 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKSSADNLQ 67


>gi|227818999|ref|YP_002822970.1| cold shock protein Y4CH [Sinorhizobium fredii NGR234]
 gi|227337998|gb|ACP22217.1| probable cold shock protein Y4CH [Sinorhizobium fredii NGR234]
          Length = 69

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   +   DVF+H SAV  AGL  L EGQ V+++  Q+  
Sbjct: 1  MASGTVKWFNSTKGFGFIAPD---DGSPDVFVHISAVERAGLSTLKEGQKVSFEATQDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK SA+NL+ +
Sbjct: 58 SGKTSADNLRAL 69


>gi|62290382|ref|YP_222175.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|189024609|ref|YP_001935377.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
 gi|254689680|ref|ZP_05152934.1| cold shock DNA-binding domain-containing protein [Brucella
          abortus bv. 6 str. 870]
 gi|254694170|ref|ZP_05155998.1| cold shock DNA-binding domain-containing protein [Brucella
          abortus bv. 3 str. Tulya]
 gi|254697823|ref|ZP_05159651.1| cold shock DNA-binding domain-containing protein [Brucella
          abortus bv. 2 str. 86/8/59]
 gi|254730712|ref|ZP_05189290.1| cold shock DNA-binding domain-containing protein [Brucella
          abortus bv. 4 str. 292]
 gi|256257931|ref|ZP_05463467.1| cold shock DNA-binding domain-containing protein [Brucella
          abortus bv. 9 str. C68]
 gi|260546920|ref|ZP_05822659.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus NCTC 8038]
 gi|260755213|ref|ZP_05867561.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 6 str. 870]
 gi|260758433|ref|ZP_05870781.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 4 str. 292]
 gi|260762259|ref|ZP_05874602.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 2 str. 86/8/59]
 gi|261214476|ref|ZP_05928757.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 3 str. Tulya]
 gi|62196514|gb|AAX74814.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|189020181|gb|ACD72903.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
 gi|260095970|gb|EEW79847.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus NCTC 8038]
 gi|260668751|gb|EEX55691.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 4 str. 292]
 gi|260672691|gb|EEX59512.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 2 str. 86/8/59]
 gi|260675321|gb|EEX62142.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 6 str. 870]
 gi|260916083|gb|EEX82944.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 3 str. Tulya]
          Length = 69

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  
Sbjct: 1  MATGTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 57

Query: 62 NGKYSAENL 70
          +G+ SA+NL
Sbjct: 58 SGRSSADNL 66


>gi|23502361|ref|NP_698488.1| cold-shock family protein [Brucella suis 1330]
 gi|161619440|ref|YP_001593327.1| hypothetical protein BCAN_A1530 [Brucella canis ATCC 23365]
 gi|163843747|ref|YP_001628151.1| hypothetical protein BSUIS_A1549 [Brucella suis ATCC 23445]
 gi|225627936|ref|ZP_03785972.1| cold-shock family protein [Brucella ceti str. Cudo]
 gi|225852973|ref|YP_002733206.1| hypothetical protein BMEA_A1545 [Brucella melitensis ATCC 23457]
 gi|254704745|ref|ZP_05166573.1| cold shock protein CSPA [Brucella suis bv. 3 str. 686]
 gi|254708158|ref|ZP_05169986.1| cold shock protein CSPA [Brucella pinnipedialis M163/99/10]
 gi|254710530|ref|ZP_05172341.1| cold shock protein CSPA [Brucella pinnipedialis B2/94]
 gi|254714712|ref|ZP_05176523.1| cold shock protein CSPA [Brucella ceti M644/93/1]
 gi|254717773|ref|ZP_05179584.1| cold shock protein CSPA [Brucella ceti M13/05/1]
 gi|254719531|ref|ZP_05181342.1| cold shock protein CSPA [Brucella sp. 83/13]
 gi|256032023|ref|ZP_05445637.1| cold shock protein CSPA [Brucella pinnipedialis M292/94/1]
 gi|256045115|ref|ZP_05448016.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061545|ref|ZP_05451687.1| cold shock protein CSPA [Brucella neotomae 5K33]
 gi|256160221|ref|ZP_05457915.1| cold shock protein CSPA [Brucella ceti M490/95/1]
 gi|256255427|ref|ZP_05460963.1| cold shock protein CSPA [Brucella ceti B1/94]
 gi|256369909|ref|YP_003107420.1| cold-shock family protein [Brucella microti CCM 4915]
 gi|260169160|ref|ZP_05755971.1| cold shock protein CSPA [Brucella sp. F5/99]
 gi|260565284|ref|ZP_05835768.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. 16M]
 gi|260566008|ref|ZP_05836478.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 4 str. 40]
 gi|261219622|ref|ZP_05933903.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M13/05/1]
 gi|261315666|ref|ZP_05954863.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M163/99/10]
 gi|261322510|ref|ZP_05961707.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M644/93/1]
 gi|261325555|ref|ZP_05964752.1| cold-shock DNA-binding domain-containing protein [Brucella
          neotomae 5K33]
 gi|261755443|ref|ZP_05999152.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 3 str. 686]
 gi|265989135|ref|ZP_06101692.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M292/94/1]
 gi|265991548|ref|ZP_06104105.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. Rev.1]
 gi|265998596|ref|ZP_06111153.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M490/95/1]
 gi|306838469|ref|ZP_07471310.1| cold-shock family protein [Brucella sp. NF 2653]
 gi|306843158|ref|ZP_07475777.1| cold-shock family protein [Brucella sp. BO2]
 gi|306844496|ref|ZP_07477085.1| cold-shock family protein [Brucella sp. BO1]
 gi|23348343|gb|AAN30403.1| cold-shock family protein [Brucella suis 1330]
 gi|161336251|gb|ABX62556.1| Hypothetical protein BCAN_A1530 [Brucella canis ATCC 23365]
 gi|163674470|gb|ABY38581.1| Hypothetical protein BSUIS_A1549 [Brucella suis ATCC 23445]
 gi|225617099|gb|EEH14145.1| cold-shock family protein [Brucella ceti str. Cudo]
 gi|225641338|gb|ACO01252.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|256000072|gb|ACU48471.1| cold-shock family protein [Brucella microti CCM 4915]
 gi|260151352|gb|EEW86446.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. 16M]
 gi|260155526|gb|EEW90606.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 4 str. 40]
 gi|260924711|gb|EEX91279.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M13/05/1]
 gi|261295200|gb|EEX98696.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M644/93/1]
 gi|261301535|gb|EEY05032.1| cold-shock DNA-binding domain-containing protein [Brucella
          neotomae 5K33]
 gi|261304692|gb|EEY08189.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M163/99/10]
 gi|261745196|gb|EEY33122.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 3 str. 686]
 gi|262553220|gb|EEZ09054.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M490/95/1]
 gi|263002332|gb|EEZ14907.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. Rev.1]
 gi|264661332|gb|EEZ31593.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M292/94/1]
 gi|306275107|gb|EFM56863.1| cold-shock family protein [Brucella sp. BO1]
 gi|306286653|gb|EFM58214.1| cold-shock family protein [Brucella sp. BO2]
 gi|306406433|gb|EFM62671.1| cold-shock family protein [Brucella sp. NF 2653]
          Length = 69

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  
Sbjct: 1  MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 57

Query: 62 NGKYSAENL 70
          +G+ SA+NL
Sbjct: 58 SGRSSADNL 66


>gi|153009006|ref|YP_001370221.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
          anthropi ATCC 49188]
 gi|151560894|gb|ABS14392.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
          anthropi ATCC 49188]
          Length = 69

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  
Sbjct: 1  MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLATLDEGQKVSYEIVQDRR 57

Query: 62 NGKYSAENL 70
          +G+ SA+NL
Sbjct: 58 SGRSSADNL 66


>gi|329114551|ref|ZP_08243310.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
 gi|326696031|gb|EGE47713.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
          Length = 82

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KGYGFI P+   + G DVF+H +AV +AGL  L +GQ V++D V+  
Sbjct: 15 LMPTGTVKWFNATKGYGFIAPD---DGGKDVFVHITAVQAAGLRGLNDGQKVSFDLVEE- 70

Query: 61 ANGKYSAENLKL 72
            GK +A NLK+
Sbjct: 71 -RGKQAATNLKV 81


>gi|27379706|ref|NP_771235.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27352858|dbj|BAC49860.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 75

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+   + G DVF+H SAV  AG+  L EGQ V+++ V +  
Sbjct: 7  MNTGTVKWFNGQKGFGFIQPD---QGGQDVFVHISAVERAGMSTLNEGQKVSFEIVADRR 63

Query: 62 NGKYSAENLKLV 73
           GK +AENL+ V
Sbjct: 64 TGKSAAENLRAV 75


>gi|315498658|ref|YP_004087462.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
 gi|315416670|gb|ADU13311.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
          Length = 69

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 50/71 (70%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G+DVF+H SAV  +GL  L EGQ VT++  ++  
Sbjct: 1  MSTGTVKWFNGTKGYGFIQPD---DGGNDVFVHISAVERSGLRGLNEGQKVTFELARDKR 57

Query: 62 NGKYSAENLKL 72
          +GK SAENL++
Sbjct: 58 SGKMSAENLQV 68


>gi|227819992|ref|YP_002823963.1| cold shock protein CspA [Sinorhizobium fredii NGR234]
 gi|36958641|gb|AAQ87109.1| Cold shock protein cspA [Sinorhizobium fredii NGR234]
 gi|227338991|gb|ACP23210.1| cold shock protein CspA [Sinorhizobium fredii NGR234]
          Length = 69

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   +   DVF+H SAV  AGL +L EGQ VTYD V+++ 
Sbjct: 1  MSSGTVKWFNSTKGFGFIQPD---DGSTDVFVHISAVERAGLRSLVEGQKVTYDIVRDNR 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKSSADNLR 67


>gi|86748914|ref|YP_485410.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris HaA2]
 gi|91977978|ref|YP_570637.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          BisB5]
 gi|148258227|ref|YP_001242812.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
          BTAi1]
 gi|192292560|ref|YP_001993165.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
 gi|86571942|gb|ABD06499.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          HaA2]
 gi|91684434|gb|ABE40736.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB5]
 gi|146410400|gb|ABQ38906.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
 gi|192286309|gb|ACF02690.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
          Length = 70

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  
Sbjct: 1  MSMGTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKSSADNLR 67


>gi|146338131|ref|YP_001203179.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
 gi|146190937|emb|CAL74942.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
          Length = 70

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  
Sbjct: 1  MSMGTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKSSADNLR 67


>gi|298290653|ref|YP_003692592.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296927164|gb|ADH87973.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 69

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+       DVF+H SAV  AGL  L EGQ V+Y+   +  
Sbjct: 1  MATGTVKWFNSQKGYGFIQPDA---GSSDVFVHISAVERAGLSTLNEGQKVSYEVEADRR 57

Query: 62 NGKYSAENLKLV 73
           GK SA NL+ +
Sbjct: 58 TGKSSAANLRAL 69


>gi|209966586|ref|YP_002299501.1| hypothetical protein RC1_3328 [Rhodospirillum centenum SW]
 gi|209960052|gb|ACJ00689.1| conserved domain protein [Rhodospirillum centenum SW]
          Length = 69

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE     G DVF+H SAV  AGL  L+EGQ V+Y+  ++  
Sbjct: 1  MPVGTVKWFNSTKGYGFIQPE---NGGADVFVHISAVERAGLSTLSEGQRVSYEEQRDPR 57

Query: 62 NGKYSAENLK 71
           GK SAENLK
Sbjct: 58 RGKTSAENLK 67


>gi|15965864|ref|NP_386217.1| cold shock transcription regulator protein [Sinorhizobium
          meliloti 1021]
 gi|150397206|ref|YP_001327673.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|307309620|ref|ZP_07589273.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307321759|ref|ZP_07601147.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|15075133|emb|CAC46690.1| Probable cold shock transcription regulator [Sinorhizobium
          meliloti 1021]
 gi|150028721|gb|ABR60838.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
 gi|306892581|gb|EFN23379.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306899955|gb|EFN30577.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 69

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   +   DVF+H SAV  AGL  L +GQ V+++  Q+  
Sbjct: 1  MASGTVKWFNSTKGFGFIQPD---DGAADVFVHISAVERAGLSTLKDGQKVSFELTQDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK SA+NL+ +
Sbjct: 58 SGKTSADNLRAL 69


>gi|207724747|ref|YP_002255144.1| hypothetical transcription regulator protein [Ralstonia
           solanacearum MolK2]
 gi|206589970|emb|CAQ36931.1| hypothetical transcription regulator protein [Ralstonia
           solanacearum MolK2]
          Length = 131

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           ++  G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++  Q  
Sbjct: 64  IMATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQG- 119

Query: 61  ANGKYSAENLK 71
             GK  A N++
Sbjct: 120 PKGKQ-ASNIQ 129


>gi|115525742|ref|YP_782653.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisA53]
 gi|209886524|ref|YP_002290381.1| hypothetical protein OCAR_7413 [Oligotropha carboxidovorans OM5]
 gi|299132279|ref|ZP_07025474.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 gi|115519689|gb|ABJ07673.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisA53]
 gi|209874720|gb|ACI94516.1| conserved domain protein [Oligotropha carboxidovorans OM5]
 gi|298592416|gb|EFI52616.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
          Length = 70

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  
Sbjct: 1  MSMGTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKSSADNLR 67


>gi|16519680|ref|NP_443800.1| putative cold-shock DNA-binding domain-containing protein
          [Sinorhizobium fredii NGR234]
 gi|2493775|sp|P55390|Y4CH_RHISN RecName: Full=Probable cold shock protein y4cH
 gi|2182333|gb|AAB92423.1| putative cold-shock DNA-binding domain-containing protein
          [Sinorhizobium fredii NGR234]
          Length = 69

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G++KW+N  KG+GFI P+   +   DVF+H SAV  AGL  L +GQ ++Y+ V++ 
Sbjct: 1  MMATGTVKWFNATKGFGFIQPD---DGSADVFVHISAVERAGLRELKDGQKISYELVKDR 57

Query: 61 ANGKYSAENLK 71
           +GK SA+NL+
Sbjct: 58 KSGKMSADNLQ 68


>gi|26987721|ref|NP_743146.1| cold-shock domain-contain protein [Pseudomonas putida KT2440]
 gi|24982409|gb|AAN66610.1|AE016288_9 cold-shock domain family protein [Pseudomonas putida KT2440]
          Length = 165

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             +G++KW+N +KGYGFITPE    SG D+F+H  A+   G  +L EGQ VT++ VQ   
Sbjct: 100 RQKGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQQVTFEAVQGQK 155

Query: 62  NGKYSAENLKLV 73
                A+ ++ V
Sbjct: 156 G--MQADKVQPV 165


>gi|297182471|gb|ADI18634.1| cold shock proteins [uncultured Rhodospirillales bacterium
          HF4000_24M03]
          Length = 89

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP KG+GFI PE   +  +D F+H SAV SAGL  L EGQ V+Y+  Q   
Sbjct: 21 MATGTVKWFNPAKGFGFIEPE---DGSNDAFVHISAVESAGLTTLNEGQKVSYEL-QPGK 76

Query: 62 NGKYSAENLKLVP 74
          NGK SAENL +  
Sbjct: 77 NGKSSAENLSVTE 89


>gi|39936734|ref|NP_949010.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris CGA009]
 gi|316933046|ref|YP_004108028.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris DX-1]
 gi|39650590|emb|CAE29113.1| cold shock DNA binding protein [Rhodopseudomonas palustris
          CGA009]
 gi|315600760|gb|ADU43295.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          DX-1]
          Length = 84

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+N  KGYGFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  
Sbjct: 15 VSMGTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 71

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 72 SGKSSADNLR 81


>gi|312795290|ref|YP_004028212.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
 gi|312167065|emb|CBW74068.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
          Length = 98

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFITP+   E G+D+F H SA+   G   L EGQ V+++ VQ   
Sbjct: 31 MATGTVKWFNDAKGYGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVSFEVVQGPK 87

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 88 G--KQASNIQ 95


>gi|116693857|ref|YP_839390.1| cold-shock DNA-binding domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|116651857|gb|ABK12497.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
           HI2424]
          Length = 170

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++KW+N +KG+GFITP+     GDD+F H S +   G   L EGQ V+Y+  +N  
Sbjct: 104 MDTGTVKWFNDNKGFGFITPDS---GGDDLFAHFSEIRGDGFKTLAEGQKVSYE-TKNGP 159

Query: 62  NGKYSAENLKLVPK 75
            G  ++    +VP+
Sbjct: 160 KGLQASN---IVPQ 170


>gi|323136224|ref|ZP_08071306.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
 gi|322398298|gb|EFY00818.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
          Length = 70

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G DVF+H SAV  AGL +L EGQ V+Y+ V +  
Sbjct: 1  MATGTVKWFNSQKGFGFIQPDA---GGADVFVHISAVERAGLRDLLEGQKVSYEVVVDTR 57

Query: 62 NGKYSAENLKL 72
           GK SA+NL++
Sbjct: 58 RGKSSADNLQI 68


>gi|254454339|ref|ZP_05067776.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus
           238]
 gi|198268745|gb|EDY93015.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus
           238]
          Length = 152

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++KW+N  KG+GFI PE     G DVF+H SAV  +GL  L + Q VT+D V+   
Sbjct: 85  MANGTVKWFNTTKGFGFIAPET---GGKDVFVHISAVERSGLTGLADDQKVTFD-VEAGR 140

Query: 62  NGKYSAENLKL 72
           +G+ SA NL L
Sbjct: 141 DGRESAVNLAL 151


>gi|294509040|ref|YP_003565929.1| cold shock domain protein [Bacillus megaterium QM B1551]
 gi|294352344|gb|ADE72666.1| cold shock domain protein [Bacillus megaterium QM B1551]
          Length = 130

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           ++ +G++KW+N DKG+GFI      E GDDVF+H SA+   G  +L EGQ VT+D  Q  
Sbjct: 64  IMTQGTVKWFNADKGFGFIE----IEGGDDVFVHFSAIQGEGFKSLEEGQKVTFDIEQGQ 119

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 120 -RGAQAANV 127


>gi|170745542|ref|YP_001766999.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium radiotolerans JCM 2831]
 gi|170659143|gb|ACB28197.1| cold-shock DNA-binding domain protein [Methylobacterium
          radiotolerans JCM 2831]
          Length = 69

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL +L EGQ + YD   +  
Sbjct: 1  MATGTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGLRSLNEGQKIAYDVEADRR 57

Query: 62 NGKYSAENLK 71
          +GK SA NLK
Sbjct: 58 SGKESAANLK 67


>gi|170741171|ref|YP_001769826.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium sp. 4-46]
 gi|168195445|gb|ACA17392.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
          Length = 73

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G++KW+N  KG+GFI P+   + G DVF+H SAV  +GL  L+EGQ V+Y+   + 
Sbjct: 4  MMSTGTVKWFNGQKGFGFIQPD---DGGKDVFVHISAVERSGLQTLSEGQKVSYELETDR 60

Query: 61 ANGKYSAENLK 71
           +GK SA +L+
Sbjct: 61 RSGKQSAGSLR 71


>gi|300697692|ref|YP_003748353.1| Cold shock protein, DNA-binding (cspX ) [Ralstonia solanacearum
           CFBP2957]
 gi|299074416|emb|CBJ53966.1| Cold shock protein, DNA-binding (cspX ) [Ralstonia solanacearum
           CFBP2957]
          Length = 128

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           ++  G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++  Q  
Sbjct: 61  IMATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQGP 117

Query: 61  ANGKYSAENLK 71
                 A N++
Sbjct: 118 KG--KQASNIQ 126


>gi|170743586|ref|YP_001772241.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium sp. 4-46]
 gi|168197860|gb|ACA19807.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
          Length = 69

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+   +  
Sbjct: 1  MNTGTVKWFNDQKGYGFIQPD---DGGKDVFVHISAVERAGLRGLAEGQKVSYELQTDKR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKVAAANLQ 67


>gi|85703785|ref|ZP_01034889.1| Cold-shock protein [Roseovarius sp. 217]
 gi|85672713|gb|EAQ27570.1| Cold-shock protein [Roseovarius sp. 217]
          Length = 114

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++KW+N  KGYGFI P+G    G DVF+H SAV  AGL  L + Q VT+D  ++  
Sbjct: 47  MATGTVKWFNATKGYGFIAPDG---GGKDVFVHISAVERAGLTGLADDQKVTFDI-ESGR 102

Query: 62  NGKYSAENLKL 72
           +G+ SA N+ L
Sbjct: 103 DGRESASNISL 113


>gi|27379097|ref|NP_770626.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27352247|dbj|BAC49251.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 69

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   +   DVF+H SAV  AGL +L EGQ V++D V +  
Sbjct: 1  MAMGTVKWFNTQKGYGFIQPD---DGQKDVFVHISAVERAGLSSLNEGQKVSFDIVADRR 57

Query: 62 NGKYSAENLKL 72
          +GK SA+NL++
Sbjct: 58 SGKSSADNLRV 68


>gi|27376556|ref|NP_768085.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27349697|dbj|BAC46710.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 70

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ ++Y+ V +  
Sbjct: 1  MSMGTVKWFNATKGFGFIQPD---DGGKDVFVHISAVERAGLGTLREGQKISYEIVADRR 57

Query: 62 NGKYSAENLK 71
          +GK +A+NL+
Sbjct: 58 SGKSAADNLR 67


>gi|256114052|ref|ZP_05454822.1| cold shock protein CSPA [Brucella melitensis bv. 3 str. Ether]
 gi|265995386|ref|ZP_06107943.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 3 str. Ether]
 gi|262766499|gb|EEZ12288.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 3 str. Ether]
          Length = 69

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G +VF+H SAV  AGL  L EGQ V+Y+ VQ+  
Sbjct: 1  MATGTVKWFNTTKGFGFIQPD---QGGTNVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 57

Query: 62 NGKYSAENL 70
          +G+ SA+NL
Sbjct: 58 SGRSSADNL 66


>gi|90425189|ref|YP_533559.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisB18]
 gi|90107203|gb|ABD89240.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB18]
          Length = 70

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  
Sbjct: 1  MSMGTVKWFNATKGFGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKSSADNLR 67


>gi|296447314|ref|ZP_06889242.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
 gi|296255179|gb|EFH02278.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
          Length = 69

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   ++G DVF+H SAV  AGL +L EGQ + Y+  Q+  
Sbjct: 1  MATGTVKWFNAQKGYGFIQPD---DNGKDVFVHISAVERAGLRDLREGQKLDYELTQDRR 57

Query: 62 NGKYSAENLKLV 73
           GK +A+ LK +
Sbjct: 58 TGKSAADRLKAL 69


>gi|34498661|ref|NP_902876.1| cold shock transcription regulator protein [Chromobacterium
           violaceum ATCC 12472]
 gi|34104514|gb|AAQ60872.1| cold shock transcription regulator protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 110

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++KW+N  KG+GFITP+   E GDDVF H S + + G  +L E Q V++D V+   
Sbjct: 44  MATGTVKWFNDSKGFGFITPD---EGGDDVFAHFSQINAKGFRSLAENQRVSFDIVEG-P 99

Query: 62  NGKYSAENLKLV 73
            GK  A N++ +
Sbjct: 100 KGKQ-ASNIQPI 110


>gi|319408889|emb|CBI82546.1| cold shock protein [Bartonella schoenbuchensis R1]
          Length = 70

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KG+GFI P    +   DVF+H SAV  +GL NL EGQ ++Y+ VQ+ 
Sbjct: 1  MSSTGTVKWFNTTKGFGFIQP---NDGSADVFVHISAVERSGLSNLNEGQKISYEVVQDR 57

Query: 61 ANGKYSAENLKLV 73
           +GK +A NL ++
Sbjct: 58 RSGKLAAGNLAVL 70


>gi|15965810|ref|NP_386163.1| cold shock transcription regulator protein [Sinorhizobium
          meliloti 1021]
 gi|307311344|ref|ZP_07590987.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307318877|ref|ZP_07598309.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|7387593|sp|Q9Z3S6|CSPA_RHIME RecName: Full=Cold shock protein CspA
 gi|3776223|gb|AAC64672.1| CspA [Sinorhizobium meliloti]
 gi|15075079|emb|CAC46636.1| Cold shock transcriptional regulator [Sinorhizobium meliloti
          1021]
 gi|306895598|gb|EFN26352.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306899645|gb|EFN30273.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 69

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ +L EGQ VTYD V++  
Sbjct: 1  MNSGTVKWFNSTKGFGFIQPD---DGATDVFVHASAVERAGMRSLVEGQKVTYDIVRDTK 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKSSADNLR 67


>gi|295696558|ref|YP_003589796.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
 gi|295412160|gb|ADG06652.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
          Length = 66

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFITP+   + G DVF+H SA+   G   L EGQ V YD V+    G
Sbjct: 2  KGKVKWFNAEKGYGFITPD---DGGKDVFVHYSAIQEEGFRTLEEGQDVEYDIVEG-PRG 57

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 58 PQAANVVKL 66


>gi|163850319|ref|YP_001638362.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218528876|ref|YP_002419692.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240137390|ref|YP_002961861.1| major cold shock protein [Methylobacterium extorquens AM1]
 gi|254559570|ref|YP_003066665.1| major cold shock protein [Methylobacterium extorquens DM4]
 gi|163661924|gb|ABY29291.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218521179|gb|ACK81764.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240007358|gb|ACS38584.1| major cold shock protein [Methylobacterium extorquens AM1]
 gi|254266848|emb|CAX22647.1| major cold shock protein [Methylobacterium extorquens DM4]
          Length = 69

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL NL EGQ V+Y+ + +  
Sbjct: 1  MDTGTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGLRNLVEGQKVSYEVLTDKR 57

Query: 62 NGKYSAENLKLV 73
          +GK +A NL+ V
Sbjct: 58 SGKDAAGNLQAV 69


>gi|226495947|ref|NP_001141714.1| hypothetical protein LOC100273843 [Zea mays]
 gi|194705650|gb|ACF86909.1| unknown [Zea mays]
          Length = 303

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             RG++KW+N  KG+GFI+PE   +  +D+F+H+S++ S G  +L EG+ V +   + D 
Sbjct: 60  RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 115

Query: 62  NGKYSAENLK 71
           +G+  A ++ 
Sbjct: 116 DGRTKAVDVT 125


>gi|300023882|ref|YP_003756493.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299525703|gb|ADJ24172.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 69

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G    G+DVF+H SAV  AGL  L EGQ ++++ V +  
Sbjct: 1  MQTGTVKWFNSQKGFGFIQPDG---GGNDVFVHISAVERAGLNGLNEGQKISFEIVADRR 57

Query: 62 NGKYSAENLKLV 73
          +GK SA+NL+ V
Sbjct: 58 SGKSSADNLRPV 69


>gi|150397151|ref|YP_001327618.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|150028666|gb|ABR60783.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
          Length = 69

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ +L EGQ VT+D V++  
Sbjct: 1  MNSGTVKWFNSTKGFGFIQPD---DGATDVFVHASAVERAGMRSLVEGQKVTFDIVRDTK 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKSSADNLR 67


>gi|218281154|ref|ZP_03487680.1| hypothetical protein EUBIFOR_00241 [Eubacterium biforme DSM 3989]
 gi|218217600|gb|EEC91138.1| hypothetical protein EUBIFOR_00241 [Eubacterium biforme DSM 3989]
          Length = 90

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFIT    +E G DVF+H S++ S G   L EGQ VTYD V++D 
Sbjct: 21 MSTGKVKWFNAEKGYGFIT----SEDGKDVFVHYSSINSEGFKTLEEGQTVTYDVVESDR 76

Query: 62 NGKYSAENLKLVPKSS 77
               A N+ +V  ++
Sbjct: 77 G--QQANNVTVVDTAA 90


>gi|170751403|ref|YP_001757663.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium radiotolerans JCM 2831]
 gi|170657925|gb|ACB26980.1| cold-shock DNA-binding domain protein [Methylobacterium
          radiotolerans JCM 2831]
          Length = 69

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+   +  
Sbjct: 1  MSTGTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGLRGLNEGQKVSYELETDRR 57

Query: 62 NGKYSAENLK 71
          +GK SA  L+
Sbjct: 58 SGKQSAGQLQ 67


>gi|23011600|ref|ZP_00051912.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 69

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+     G DVF+H SAV  AGL NL EGQ V+Y+ + +  
Sbjct: 1  MDTGTVKWFNETKGYGFIQPD---NGGKDVFVHISAVERAGLRNLVEGQKVSYEVLTDKR 57

Query: 62 NGKYSAENLKLV 73
          +GK +A NL+ V
Sbjct: 58 SGKDAAGNLQAV 69


>gi|163792428|ref|ZP_02186405.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
          BAL199]
 gi|159182133|gb|EDP66642.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
          BAL199]
          Length = 68

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE   +   DVF+H SAV  AG+ +L EGQ V++D V+   
Sbjct: 1  MATGTVKWFNATKGYGFIEPE---DGSADVFVHISAVERAGIASLNEGQKVSFD-VERGR 56

Query: 62 NGKYSAENLKLV 73
          NGKY+A +L+ +
Sbjct: 57 NGKYAATDLRPL 68


>gi|83312382|ref|YP_422646.1| cold shock protein [Magnetospirillum magneticum AMB-1]
 gi|82947223|dbj|BAE52087.1| Cold shock protein [Magnetospirillum magneticum AMB-1]
          Length = 69

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  GS+KW+N  KGYGFI P+     G DVF+H SAV  AGL  L +GQ V+++  ++  
Sbjct: 1  MPNGSVKWFNSTKGYGFIAPD---NGGPDVFVHISAVERAGLSGLNDGQKVSFEEERDPR 57

Query: 62 NGKYSAENLKLV 73
           GK SA NLK++
Sbjct: 58 KGKTSAVNLKVL 69


>gi|255505169|ref|ZP_05344871.3| putative cold shock protein [Bryantella formatexigens DSM 14469]
 gi|255269407|gb|EET62612.1| putative cold shock protein [Bryantella formatexigens DSM 14469]
          Length = 91

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFIT     E G DVF+H SA+   G  +L EGQ V+YD  +  A
Sbjct: 26 MNKGTVKWFNAEKGYGFIT----GEDGADVFVHFSAIQGEGFKSLEEGQAVSYDLTEG-A 80

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 81 RGMQAANVVKL 91


>gi|227535413|ref|ZP_03965462.1| CspA family cold shock transcriptional regulator [Lactobacillus
          paracasei subsp. paracasei ATCC 25302]
 gi|227187009|gb|EEI67076.1| CspA family cold shock transcriptional regulator [Lactobacillus
          paracasei subsp. paracasei ATCC 25302]
          Length = 99

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N +KGYGFIT E     G DVF+H SA+   G   L EGQ VT++   +D
Sbjct: 33 LMEHGTVKWFNAEKGYGFITRE----DGSDVFVHFSAIQGDGYKTLEEGQAVTFEVEDSD 88

Query: 61 ANGKYSAENL 70
                A N+
Sbjct: 89 RG--PQAVNV 96


>gi|75674509|ref|YP_316930.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
 gi|85713497|ref|ZP_01044487.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
 gi|74419379|gb|ABA03578.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
          Nb-255]
 gi|85699401|gb|EAQ37268.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
          Length = 68

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 3/68 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  +G
Sbjct: 1  MGTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSG 57

Query: 64 KYSAENLK 71
          K SA+NL+
Sbjct: 58 KSSADNLR 65


>gi|299131851|ref|ZP_07025046.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 gi|298591988|gb|EFI52188.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
          Length = 69

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI P   T+ G DVF+H SAV  AGL NL EGQ V ++   +  
Sbjct: 1  MAQGTVKWFNSQKGFGFIAP---TDGGTDVFVHISAVERAGLSNLAEGQKVEFEAKTDKM 57

Query: 62 NGKYSAENLKLV 73
           GK SAENL+L+
Sbjct: 58 RGKTSAENLQLL 69


>gi|269954913|ref|YP_003324702.1| cold-shock DNA-binding domain-containing protein [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269303594|gb|ACZ29144.1| cold-shock DNA-binding domain protein [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 67

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI PE   +   DVF H SA+ + G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGYGFIAPE---DGSQDVFAHYSAIQTNGYRTLEEGQRVEFDTAQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--LQAENIRAL 67


>gi|269127093|ref|YP_003300463.1| cold-shock DNA-binding domain-containing protein [Thermomonospora
          curvata DSM 43183]
 gi|268312051|gb|ACY98425.1| cold-shock DNA-binding domain protein [Thermomonospora curvata
          DSM 43183]
          Length = 68

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N +KGYGFI  +G    G DVF+H SA+ S+G   L E Q V ++  Q  
Sbjct: 1  MPQQGTVKWFNAEKGYGFIAVDG---DGPDVFVHYSAIQSSGYRTLDENQRVEFEVTQGS 57

Query: 61 ANGKYSAENLKLV 73
                A+ ++ +
Sbjct: 58 RG--PQADQVRPL 68


>gi|258542856|ref|YP_003188289.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-01]
 gi|256633934|dbj|BAH99909.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-01]
 gi|256636993|dbj|BAI02962.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-03]
 gi|256640046|dbj|BAI06008.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-07]
 gi|256643102|dbj|BAI09057.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-22]
 gi|256646157|dbj|BAI12105.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-26]
 gi|256649210|dbj|BAI15151.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-32]
 gi|256652197|dbj|BAI18131.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655254|dbj|BAI21181.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-12]
          Length = 67

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H +AV +AGL  L +GQ V++D V+   
Sbjct: 1  MPTGTVKWFNATKGYGFIAPD---DGGKDVFVHITAVQAAGLRGLNDGQKVSFDLVEE-- 55

Query: 62 NGKYSAENLKL 72
           GK +A NLK+
Sbjct: 56 RGKQAATNLKV 66


>gi|92116417|ref|YP_576146.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91799311|gb|ABE61686.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 69

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G    G D+F+H SAV  AGL +L +GQ V+++   +  
Sbjct: 1  MATGTVKWFNATKGFGFIQPDG---GGQDIFVHISAVERAGLSSLNDGQKVSFEAKTDSM 57

Query: 62 NGKYSAENLKL 72
           GK SAENL++
Sbjct: 58 RGKTSAENLRV 68


>gi|58040591|ref|YP_192555.1| cold shock protein [Gluconobacter oxydans 621H]
 gi|58003005|gb|AAW61899.1| Cold shock protein [Gluconobacter oxydans 621H]
          Length = 96

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G D F+H S +  AG+  L EGQ V+Y+  ++  
Sbjct: 29 MATGTVKWFNSTKGFGFIQPD---NGGQDAFVHISELERAGMHTLNEGQHVSYEL-ESGR 84

Query: 62 NGKYSAENLKLV 73
          NGK SA ++K +
Sbjct: 85 NGKTSAVSIKAI 96


>gi|85714849|ref|ZP_01045835.1| cold shock protein [Nitrobacter sp. Nb-311A]
 gi|85698335|gb|EAQ36206.1| cold shock protein [Nitrobacter sp. Nb-311A]
          Length = 81

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI P+G    G+DVF+H SAV  AGL  L EGQ V+++   ++A
Sbjct: 13 MSTGIVKWFNSQKGYGFIQPDG---GGNDVFVHISAVQRAGLNGLGEGQKVSFEARTDEA 69

Query: 62 NGKYSAENLKL 72
           GK SA+NL L
Sbjct: 70 RGKVSAQNLSL 80


>gi|23009266|ref|ZP_00050379.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 69

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW++  KGYGFI P+     G DVF+H SAV  AGL  L EGQ VT+D   +  
Sbjct: 1  MNTGTVKWFDEIKGYGFIQPD---NGGKDVFVHISAVQQAGLRGLAEGQKVTFDIENDRR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKPAAVNLQ 67


>gi|163867963|ref|YP_001609167.1| cold shock protein [Bartonella tribocorum CIP 105476]
 gi|161017614|emb|CAK01172.1| cold shock protein [Bartonella tribocorum CIP 105476]
          Length = 69

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P   ++   DVF+H SAV  +GL NL EGQ V+YD +Q+  
Sbjct: 1  MSTGTVKWFNTTKGFGFIQP---SDGSADVFVHISAVERSGLSNLNEGQKVSYDVLQDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK++A NL  +
Sbjct: 58 SGKFAAGNLAAL 69


>gi|39936462|ref|NP_948738.1| cold shock DNA binding protein [Rhodopseudomonas palustris
          CGA009]
 gi|39650318|emb|CAE28840.1| cold shock DNA binding protein [Rhodopseudomonas palustris
          CGA009]
          Length = 75

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P   ++ G+DVF+H SAV  AGL  L EGQ V+++   +  
Sbjct: 7  MTTGTVKWFNGQKGFGFIAP---SDGGNDVFVHISAVERAGLTGLAEGQKVSFEVKTDKM 63

Query: 62 NGKYSAENLKL 72
           GK SAENL L
Sbjct: 64 RGKSSAENLAL 74


>gi|25029285|ref|NP_739339.1| hypothetical protein CE2729 [Corynebacterium efficiens YS-314]
 gi|23494573|dbj|BAC19539.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 251

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + +G++KW+N +KG+GFI P   ++   DVF+H S +   G  NL E Q V ++  +   
Sbjct: 185 MAQGTVKWFNAEKGFGFIAP---SDGSADVFVHYSEIQGNGFRNLEENQQVEFELGEGAK 241

Query: 62  NGKYSAENLKLV 73
                A+ ++ +
Sbjct: 242 G--PQAQQVRAL 251


>gi|223973253|gb|ACN30814.1| unknown [Zea mays]
          Length = 444

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            RG++KW+N  KG+GFI+PE   +  +D+F+H+S++ S G  +L EG+ V +   + D 
Sbjct: 6  RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61

Query: 62 NGKYSAENLK 71
          +G+  A ++ 
Sbjct: 62 DGRTKAVDVT 71


>gi|220911419|ref|YP_002486728.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|325961974|ref|YP_004239880.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|219858297|gb|ACL38639.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|323468061|gb|ADX71746.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 67

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+   +   DVF H SA+AS+G  +L E Q V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAPD---DGSADVFAHYSAIASSGYRSLDENQKVEFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPL 67


>gi|220920871|ref|YP_002496172.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium nodulans ORS 2060]
 gi|219945477|gb|ACL55869.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
          ORS 2060]
          Length = 69

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  +GL  L+EGQ V+Y+   +  
Sbjct: 1  MSIGTVKWFNGQKGFGFIQPD---DGGKDVFVHISAVERSGLHTLSEGQKVSYELETDRR 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKQSAGNLR 67


>gi|182680002|ref|YP_001834148.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
          indica subsp. indica ATCC 9039]
 gi|182635885|gb|ACB96659.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 69

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI P+   E G DVF+H SAV  +GL +L EGQ + YD V +  
Sbjct: 1  MSTGTVKWFNAEKGYGFIQPD---EGGKDVFVHISAVEQSGLRHLAEGQKINYDVVPDKR 57

Query: 62 NGKYSAENLK 71
           GK SA NL+
Sbjct: 58 TGKSSAGNLR 67


>gi|49475887|ref|YP_033928.1| cold shock protein [Bartonella henselae str. Houston-1]
 gi|49238695|emb|CAF27946.1| Cold shock protein [Bartonella henselae str. Houston-1]
          Length = 69

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P   ++   DVF+H SAV  +GL NL EGQ V+YD +Q+  
Sbjct: 1  MSTGTVKWFNTTKGFGFIQP---SDGSADVFVHISAVERSGLSNLNEGQKVSYDVLQDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK++A NL  +
Sbjct: 58 SGKFAAGNLATL 69


>gi|49474484|ref|YP_032526.1| cold shock protein [Bartonella quintana str. Toulouse]
 gi|49239988|emb|CAF26402.1| Cold shock protein [Bartonella quintana str. Toulouse]
          Length = 69

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P   ++   DVF+H SAV  +GL  L EGQ ++YD + +  
Sbjct: 1  MSTGTVKWFNATKGFGFIQP---SDGSVDVFVHISAVERSGLSTLNEGQKISYDVLHDRR 57

Query: 62 NGKYSAENL 70
          +GK +A NL
Sbjct: 58 SGKPAAGNL 66


>gi|330469983|ref|YP_004407726.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
 gi|328812954|gb|AEB47126.1| cold-shock DNA-binding domain protein [Verrucosispora maris
          AB-18-032]
          Length = 67

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFITP+G    G DVF H SA+ S+G  +L E Q V ++ VQ   
Sbjct: 1  MAIGTVKWFNADKGFGFITPDG---GGADVFAHFSAIQSSGYRSLDENQRVEFEVVQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPL 67


>gi|170751748|ref|YP_001758008.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium radiotolerans JCM 2831]
 gi|170658270|gb|ACB27325.1| cold-shock DNA-binding domain protein [Methylobacterium
          radiotolerans JCM 2831]
          Length = 69

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KGYGFI P+   + G DVF+H SAV  AG+ NL EGQ + Y+ + +  
Sbjct: 1  MNTGTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGMRNLIEGQRIAYEILTDKR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKDAAGNLQ 67


>gi|85714683|ref|ZP_01045670.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
 gi|85698568|gb|EAQ36438.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
          Length = 90

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P      G+DVF+H SAV  AGL  L EGQ VT++   +  
Sbjct: 22 MTTGTVKWFNGQKGFGFIQP---NNGGNDVFVHISAVERAGLSGLNEGQQVTFEVKTDKM 78

Query: 62 NGKYSAENLKL 72
           GK SAENL L
Sbjct: 79 RGKVSAENLSL 89


>gi|302869749|ref|YP_003838386.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
 gi|315503769|ref|YP_004082656.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|302572608|gb|ADL48810.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
          27029]
 gi|315410388|gb|ADU08505.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
          Length = 67

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFITP+   + G DVF H SA+ ++G  +L E Q V ++  Q   
Sbjct: 1  MAIGTVKWFNADKGFGFITPD---DGGADVFAHFSAIQTSGYRSLDENQRVEFEVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPL 67


>gi|238893691|ref|YP_002918425.1| cold shock protein CspE [Klebsiella pneumoniae NTUH-K2044]
 gi|238546007|dbj|BAH62358.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
          Length = 97

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   N A G
Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 88

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 89 PSAANVIAL 97


>gi|157146760|ref|YP_001454079.1| cold shock protein CspE [Citrobacter koseri ATCC BAA-895]
 gi|157083965|gb|ABV13643.1| hypothetical protein CKO_02534 [Citrobacter koseri ATCC BAA-895]
          Length = 100

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++   N A G
Sbjct: 36  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 91

Query: 64  KYSAENLKL 72
             +A  + L
Sbjct: 92  PSAANVIAL 100


>gi|229551920|ref|ZP_04440645.1| CspA family cold shock transcriptional regulator [Lactobacillus
          rhamnosus LMS2-1]
 gi|229314655|gb|EEN80628.1| CspA family cold shock transcriptional regulator [Lactobacillus
          rhamnosus LMS2-1]
          Length = 99

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N +KGYGFIT E     G DVF+H SA+   G   L EGQ VT++   +D
Sbjct: 33 LMEHGTVKWFNAEKGYGFITRE----DGSDVFVHFSAIQGEGYKTLEEGQAVTFEVEDSD 88

Query: 61 ANGKYSAENL 70
                A N+
Sbjct: 89 RG--PQAVNV 96


>gi|240850168|ref|YP_002971561.1| cold shock protein [Bartonella grahamii as4aup]
 gi|240267291|gb|ACS50879.1| cold shock protein [Bartonella grahamii as4aup]
          Length = 69

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P   ++   DVF+H SAV  +GL +L EGQ ++YD +Q+  
Sbjct: 1  MSTGTVKWFNTTKGFGFIQP---SDGSADVFVHISAVERSGLNSLNEGQKISYDVLQDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK++A NL  +
Sbjct: 58 SGKFAAGNLAAL 69


>gi|320161036|ref|YP_004174260.1| cold shock protein [Anaerolinea thermophila UNI-1]
 gi|319994889|dbj|BAJ63660.1| cold shock protein [Anaerolinea thermophila UNI-1]
          Length = 72

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + G++KW+N  KGYGFI  +    +GDDVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 4  RYTGTVKWFNATKGYGFIGRDD--NAGDDVFVHFSAIQMEGYRTLKEGQKVEFEIEQG-P 60

Query: 62 NGKYSAENLKL 72
           G  +A+ + L
Sbjct: 61 KGLQAAQVVPL 71


>gi|242063850|ref|XP_002453214.1| hypothetical protein SORBIDRAFT_04g001720 [Sorghum bicolor]
 gi|241933045|gb|EES06190.1| hypothetical protein SORBIDRAFT_04g001720 [Sorghum bicolor]
          Length = 251

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            RG++KW+N  KG+GFI+PE   +  +D+F+H+S++ S G  +L EG+ V +   + D 
Sbjct: 6  RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61

Query: 62 NGKYSAENLK 71
          +G+  A ++ 
Sbjct: 62 DGRTKAVDVT 71


>gi|238060935|ref|ZP_04605644.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|237882746|gb|EEP71574.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
          Length = 67

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFITP+G    G DVF H SA+ S+G  +L E Q V ++  Q   
Sbjct: 1  MAIGTVKWFNADKGFGFITPDG---GGADVFAHFSAIQSSGYRSLDENQRVEFEITQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPL 67


>gi|296446940|ref|ZP_06888875.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
 gi|296255507|gb|EFH02599.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
          Length = 69

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+     G DVF+H SAV  AG+  L EGQ + +D V+++ 
Sbjct: 1  MNIGTVKWFNATKGFGFIQPD---NGGADVFVHISAVERAGMQTLAEGQKIQFDLVRDNK 57

Query: 62 NGKYSAENLKL 72
          +GK SA NL++
Sbjct: 58 SGKSSAGNLQI 68


>gi|288962373|ref|YP_003452668.1| cold shock protein [Azospirillum sp. B510]
 gi|288914639|dbj|BAI76124.1| cold shock protein [Azospirillum sp. B510]
          Length = 69

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G DVF+H SAV  AGL +L +GQ ++Y+  ++  
Sbjct: 1  MPVGTVKWFNSTKGFGFIQPES---GGPDVFVHISAVERAGLRSLVDGQKISYEEQRDPK 57

Query: 62 NGKYSAENLKLV 73
           GK SAENLK V
Sbjct: 58 RGKTSAENLKAV 69


>gi|116669038|ref|YP_829971.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
          FB24]
 gi|116609147|gb|ABK01871.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
          Length = 67

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+   +   DVF H SA+A++G  +L E Q V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAPD---DGSADVFAHYSAIATSGYRSLDENQKVEFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPL 67


>gi|23004357|ref|ZP_00047730.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 67

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI PE   +   DVF H SA+ S G   L E Q V +D  Q   
Sbjct: 1  MATGTVKWFNSEKGYGFIAPE---DGSADVFAHYSAIQSQGFRTLEENQRVEFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ V
Sbjct: 58 G--PQAENIRPV 67


>gi|297744636|emb|CBI37898.3| unnamed protein product [Vitis vinifera]
          Length = 236

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITP+   + GDD+F+H+S++ S G  +L EG+ V +  V++  +G
Sbjct: 5  TGTVKWFNDQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDG 60

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 61 RTKAVDVT 68


>gi|188580080|ref|YP_001923525.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
 gi|179343578|gb|ACB78990.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
          Length = 69

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+     G DVF+H SAV  AGL NL EGQ ++Y+ + +  
Sbjct: 1  MDTGTVKWFNETKGYGFIQPD---NGGKDVFVHISAVERAGLRNLVEGQKISYEVLTDKR 57

Query: 62 NGKYSAENLKLV 73
          +GK +A NL+ V
Sbjct: 58 SGKDAAGNLQAV 69


>gi|225075510|ref|ZP_03718709.1| hypothetical protein NEIFLAOT_00523 [Neisseria flavescens
          NRL30031/H210]
 gi|269213456|ref|ZP_05982011.2| cold shock transcription regulator protein [Neisseria cinerea
          ATCC 14685]
 gi|284800098|ref|ZP_05985718.2| cold shock transcription regulator protein [Neisseria subflava
          NJ9703]
 gi|224953145|gb|EEG34354.1| hypothetical protein NEIFLAOT_00523 [Neisseria flavescens
          NRL30031/H210]
 gi|269146157|gb|EEZ72575.1| cold shock transcription regulator protein [Neisseria cinerea
          ATCC 14685]
 gi|284795950|gb|EFC51297.1| cold shock transcription regulator protein [Neisseria subflava
          NJ9703]
          Length = 80

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D     
Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMDGFKTLKEGQRVSFDVT-TG 68

Query: 61 ANGKYSAE 68
            GK +A 
Sbjct: 69 PKGKQAAN 76


>gi|27382370|ref|NP_773899.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27355541|dbj|BAC52524.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 67

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+ +G++KW+NP KGYGFI P      G DVF+H SAV  AGL  L EGQ V Y+ + N 
Sbjct: 1  MMAKGTVKWFNPTKGYGFIQP---ASGGKDVFVHISAVQKAGLSTLNEGQTVEYEEIAN- 56

Query: 61 ANGKYSAENLKL 72
            GK SAENLK+
Sbjct: 57 -RGKTSAENLKV 67


>gi|217977958|ref|YP_002362105.1| cold-shock DNA-binding domain protein [Methylocella silvestris
          BL2]
 gi|217503334|gb|ACK50743.1| cold-shock DNA-binding domain protein [Methylocella silvestris
          BL2]
          Length = 69

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NPDKGYGFI P+   + G DVF+H SAV  +GL +L EGQ + Y+ + +  
Sbjct: 1  MTTGTVKWFNPDKGYGFIQPD---DGGKDVFVHISAVEQSGLRHLQEGQKINYEVIADKR 57

Query: 62 NGKYSAENLK 71
           GK SA NL+
Sbjct: 58 TGKSSAGNLR 67


>gi|23012538|ref|ZP_00052598.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 69

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  GS+KW+N  KG+GFI P+     G DVF+H SAV  AGL  L +GQ V+++  ++  
Sbjct: 1  MPNGSVKWFNSTKGFGFIAPD---NGGPDVFVHISAVERAGLSGLNDGQKVSFEEERDPR 57

Query: 62 NGKYSAENLKLV 73
           GK SA NLK++
Sbjct: 58 KGKTSAVNLKVL 69


>gi|86749607|ref|YP_486103.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris HaA2]
 gi|86572635|gb|ABD07192.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          HaA2]
          Length = 67

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P   T    DVF+H SAV  AGL  L E Q + YD V+N  
Sbjct: 1  MQKGTVKWFNPTKGYGFIRP---TSGDKDVFVHISAVERAGLSTLNENQAIEYDLVEN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLKL
Sbjct: 56 RGKTSAENLKL 66


>gi|290963042|ref|YP_003494224.1| cold shock protein [Streptomyces scabiei 87.22]
 gi|260652568|emb|CBG75701.1| putative cold shock protein [Streptomyces scabiei 87.22]
          Length = 96

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H SA+ S+G   L EGQ VT+D  Q   
Sbjct: 30 MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSSGFRELQEGQAVTFDVTQGQK 86

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 87 G--PQAENIT 94


>gi|161869773|ref|YP_001598941.1| transcriptional regulator [Neisseria meningitidis 053442]
 gi|304387853|ref|ZP_07370027.1| cold shock transcription regulator protein [Neisseria
          meningitidis ATCC 13091]
 gi|161595326|gb|ABX72986.1| transcriptional regulator [Neisseria meningitidis 053442]
 gi|304338118|gb|EFM04254.1| cold shock transcription regulator protein [Neisseria
          meningitidis ATCC 13091]
 gi|325129992|gb|EGC52787.1| putative transcriptional regulator [Neisseria meningitidis
          OX99.30304]
 gi|325132021|gb|EGC54719.1| putative transcriptional regulator [Neisseria meningitidis M6190]
 gi|325134026|gb|EGC56681.1| putative transcriptional regulator [Neisseria meningitidis
          M13399]
 gi|325135947|gb|EGC58557.1| putative transcriptional regulator [Neisseria meningitidis M0579]
 gi|325137775|gb|EGC60350.1| putative transcriptional regulator [Neisseria meningitidis
          ES14902]
 gi|325140014|gb|EGC62543.1| putative transcriptional regulator [Neisseria meningitidis CU385]
 gi|325142116|gb|EGC64542.1| putative transcriptional regulator [Neisseria meningitidis
          961-5945]
 gi|325144132|gb|EGC66439.1| putative transcriptional regulator [Neisseria meningitidis
          M01-240013]
 gi|325198041|gb|ADY93497.1| putative transcriptional regulator [Neisseria meningitidis G2136]
 gi|325200482|gb|ADY95937.1| putative transcriptional regulator [Neisseria meningitidis
          H44/76]
 gi|325202374|gb|ADY97828.1| putative transcriptional regulator [Neisseria meningitidis
          M01-240149]
 gi|325203909|gb|ADY99362.1| putative transcriptional regulator [Neisseria meningitidis
          M01-240355]
 gi|325206328|gb|ADZ01781.1| putative transcriptional regulator [Neisseria meningitidis
          M04-240196]
 gi|325207874|gb|ADZ03326.1| putative transcriptional regulator [Neisseria meningitidis
          NZ-05/33]
          Length = 80

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D     
Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFDVT-TG 68

Query: 61 ANGKYSAE 68
            GK +A 
Sbjct: 69 PKGKQAAN 76


>gi|255065177|ref|ZP_05317032.1| cold shock transcription regulator protein [Neisseria sicca ATCC
          29256]
 gi|269214299|ref|ZP_06158484.1| cold shock transcription regulator protein [Neisseria lactamica
          ATCC 23970]
 gi|288575418|ref|ZP_05976942.2| cold shock transcription regulator protein [Neisseria mucosa ATCC
          25996]
 gi|297250909|ref|ZP_06865276.2| cold shock transcription regulator protein [Neisseria
          polysaccharea ATCC 43768]
 gi|255050598|gb|EET46062.1| cold shock transcription regulator protein [Neisseria sicca ATCC
          29256]
 gi|269210156|gb|EEZ76611.1| cold shock transcription regulator protein [Neisseria lactamica
          ATCC 23970]
 gi|288568095|gb|EFC89655.1| cold shock transcription regulator protein [Neisseria mucosa ATCC
          25996]
 gi|296837712|gb|EFH21650.1| cold shock transcription regulator protein [Neisseria
          polysaccharea ATCC 43768]
          Length = 80

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D     
Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFDVT-TG 68

Query: 61 ANGKYSAE 68
            GK +A 
Sbjct: 69 PKGKQAAN 76


>gi|167757688|ref|ZP_02429815.1| hypothetical protein CLOSCI_00018 [Clostridium scindens ATCC 35704]
 gi|167664708|gb|EDS08838.1| hypothetical protein CLOSCI_00018 [Clostridium scindens ATCC 35704]
          Length = 104

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           +++ G++KW+N +KGYGFIT     E G DVF+H SA+   G   L EGQ VT+D   + 
Sbjct: 35  LMNNGTVKWFNSEKGYGFIT----GEDGKDVFVHFSAIMCDGFKTLEEGQAVTFDVEADP 90

Query: 61  AN-GKYSAENL 70
            +  K  A N+
Sbjct: 91  KDSRKLKAVNV 101


>gi|150377524|ref|YP_001314119.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|150032071|gb|ABR64186.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
          Length = 68

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   +   DVF+H SAV  AGL +L +GQ +TY+ V++  
Sbjct: 1  MATGTVKWFNATKGFGFIQPD---DGSPDVFVHISAVERAGLQDLKDGQKITYELVKDRK 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKMSADNLR 67


>gi|46202348|ref|ZP_00053353.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 91

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  GS+KW+N  KGYGFI P+     G DVF+H SAV  AGL  L +GQ V++D  ++  
Sbjct: 23 MPNGSVKWFNSTKGYGFIAPD---NGGADVFVHISAVERAGLSGLNDGQKVSFDEERDPK 79

Query: 62 NGKYSAENLKL 72
           GK SA NLK+
Sbjct: 80 KGKTSAVNLKV 90


>gi|110634259|ref|YP_674467.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
          BNC1]
 gi|110285243|gb|ABG63302.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
          Length = 69

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+       DVF+H SAV  AG+ +L EGQ + ++ V++  
Sbjct: 1  MTTGTVKWFNATKGFGFIQPDSGQ---PDVFVHISAVEQAGMRSLVEGQKIDFEVVRDPK 57

Query: 62 NGKYSAENLKLV 73
          +GK +A NL+ V
Sbjct: 58 SGKSAAANLQAV 69


>gi|302535905|ref|ZP_07288247.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302444800|gb|EFL16616.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 69

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKLVP 74
               A+ +KL P
Sbjct: 57 G--PQADMVKLAP 67


>gi|260597049|ref|YP_003209620.1| cold shock protein CspE [Cronobacter turicensis z3032]
 gi|260216226|emb|CBA29122.1| Cold shock-like protein cspE [Cronobacter turicensis z3032]
          Length = 97

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   N A G
Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 88

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 89 PSAANVIAL 97


>gi|163793339|ref|ZP_02187314.1| pyridoxal phosphate biosynthetic protein PdxJ [alpha
          proteobacterium BAL199]
 gi|159181141|gb|EDP65656.1| pyridoxal phosphate biosynthetic protein PdxJ [alpha
          proteobacterium BAL199]
          Length = 70

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G    G D F+H SAV  +GL +L EGQ V Y+ V +  
Sbjct: 1  MATGTVKWFNAQKGFGFIEPDG---GGSDAFVHISAVERSGLSDLREGQKVDYELVSDRK 57

Query: 62 NGKYSAENLKLV 73
          +GK SA+NLK++
Sbjct: 58 SGKMSADNLKVL 69


>gi|145593188|ref|YP_001157485.1| cold-shock DNA-binding domain-containing protein [Salinispora
          tropica CNB-440]
 gi|145302525|gb|ABP53107.1| cold-shock DNA-binding protein family [Salinispora tropica
          CNB-440]
          Length = 67

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFITP+G    G DVF H SA+A++G  +L E Q V +D  Q   
Sbjct: 1  MTTGTVKWFNADKGFGFITPDG---GGADVFAHFSAIATSGFRSLDENQKVEFDITQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPL 67


>gi|326331965|ref|ZP_08198251.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325950278|gb|EGD42332.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 67

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E   + GDDVF+H SA+ + G   L E Q V +D  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAQE---DGGDDVFVHYSAIQTQGYKTLDENQKVEFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENVRPL 67


>gi|238015158|gb|ACR38614.1| unknown [Zea mays]
          Length = 240

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            RG++KW+N  KG+GFI+PE   +  +D+F+H+S++ S G  +L EG+ V +   + D 
Sbjct: 6  RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61

Query: 62 NGKYSAENLK 71
          +G+  A ++ 
Sbjct: 62 DGRTKAVDVT 71


>gi|224033945|gb|ACN36048.1| unknown [Zea mays]
          Length = 249

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            RG++KW+N  KG+GFI+PE   +  +D+F+H+S++ S G  +L EG+ V +   + D 
Sbjct: 6  RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61

Query: 62 NGKYSAENLK 71
          +G+  A ++ 
Sbjct: 62 DGRTKAVDVT 71


>gi|114797127|ref|YP_758844.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
 gi|114737301|gb|ABI75426.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
          Length = 69

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+   + G D+F+H SAV  +GL  L E Q ++Y+  +++ 
Sbjct: 1  MATGKVKWFNDQKGFGFIKPD---DGGADIFVHISAVERSGLKTLAENQSISYELYKDER 57

Query: 62 NGKYSAENLKLV 73
           GK SA +LK++
Sbjct: 58 RGKTSAVDLKVL 69


>gi|316933716|ref|YP_004108698.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris DX-1]
 gi|315601430|gb|ADU43965.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          DX-1]
          Length = 67

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P   T    DVF+H SAV  AGL  L E Q + YD V+N  
Sbjct: 1  MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQAIEYDLVEN-- 55

Query: 62 NGKYSAENLKL 72
           G+ SAENLK+
Sbjct: 56 RGRTSAENLKI 66


>gi|284031585|ref|YP_003381516.1| cold-shock DNA-binding domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283810878|gb|ADB32717.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM
          17836]
          Length = 67

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFITP+   + G DVF H SA+ ++G  +L E Q V ++  Q   
Sbjct: 1  MAVGTVKWFNADKGFGFITPD---DGGADVFAHYSAIQTSGFRSLDENQRVEFEITQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--LQAENIRPI 67


>gi|39936116|ref|NP_948392.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris CGA009]
 gi|192291834|ref|YP_001992439.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
 gi|39649970|emb|CAE28494.1| cold shock DNA binding protein [Rhodopseudomonas palustris
          CGA009]
 gi|192285583|gb|ACF01964.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
          Length = 67

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P   T    DVF+H SAV  AGL  L E Q + YD V+N  
Sbjct: 1  MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQPIEYDLVEN-- 55

Query: 62 NGKYSAENLKL 72
           G+ SAENLK+
Sbjct: 56 RGRTSAENLKI 66


>gi|220921802|ref|YP_002497103.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium nodulans ORS 2060]
 gi|219946408|gb|ACL56800.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
          ORS 2060]
          Length = 69

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L EGQ ++Y+   +  
Sbjct: 1  MNTGTVKWFNDQKGYGFIQPD---DGGKDVFVHISAVERAGLRGLVEGQKISYELQTDKR 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKVSAGNLQ 67


>gi|92116020|ref|YP_575749.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91798914|gb|ABE61289.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 68

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 3/68 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFI P+   + G+DVF+H SAV  AGL  L EGQ ++Y+ V +  +G
Sbjct: 1  MGTVKWFNATKGYGFIQPD---DGGNDVFVHVSAVERAGLGTLREGQKISYEIVADRRSG 57

Query: 64 KYSAENLK 71
          K SA+NL+
Sbjct: 58 KSSADNLR 65


>gi|86139243|ref|ZP_01057813.1| cold shock family protein [Roseobacter sp. MED193]
 gi|85824087|gb|EAQ44292.1| cold shock family protein [Roseobacter sp. MED193]
          Length = 120

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++KW+N  KG+GFI P+G T    DVF+H SAV  +GL  L + Q VT+D  +   
Sbjct: 53  MATGTVKWFNSTKGFGFIAPDGGT---KDVFVHISAVERSGLTGLADNQKVTFDI-EPGR 108

Query: 62  NGKYSAENLKLV 73
           +G+ +A NL LV
Sbjct: 109 DGREAAVNLALV 120


>gi|254294491|ref|YP_003060514.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
 gi|254043022|gb|ACT59817.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
          Length = 69

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H +AV  AGL  L EGQ V ++ V +  
Sbjct: 1  MTTGTVKWFNATKGYGFIAPD---DGGADVFVHVTAVQQAGLAGLDEGQKVEFELVTDPK 57

Query: 62 NGKYSAENLK 71
           GK SA +LK
Sbjct: 58 RGKTSAGDLK 67


>gi|46201253|ref|ZP_00055476.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
 gi|83310692|ref|YP_420956.1| cold shock protein [Magnetospirillum magneticum AMB-1]
 gi|82945533|dbj|BAE50397.1| Cold shock protein [Magnetospirillum magneticum AMB-1]
          Length = 69

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE   +   D+F+H SAV  AG+ NL EGQ ++++  ++  
Sbjct: 1  MPNGTVKWFNATKGYGFIQPE---DGSADIFVHISAVERAGIGNLKEGQKLSFETERDPR 57

Query: 62 NGKYSAENLKLV 73
           GK SA NLK +
Sbjct: 58 KGKSSAVNLKAL 69


>gi|218290263|ref|ZP_03494417.1| cold-shock DNA-binding domain protein [Alicyclobacillus
          acidocaldarius LAA1]
 gi|258512161|ref|YP_003185595.1| cold-shock DNA-binding domain-containing protein
          [Alicyclobacillus acidocaldarius subsp. acidocaldarius
          DSM 446]
 gi|218239738|gb|EED06929.1| cold-shock DNA-binding domain protein [Alicyclobacillus
          acidocaldarius LAA1]
 gi|257478887|gb|ACV59206.1| cold-shock DNA-binding domain protein [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 66

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KGYGFI  E    +GDDVF+H SA+   G   L EGQ VT+D V+   
Sbjct: 1  MYEGTVKWFNSEKGYGFIQVE----NGDDVFVHYSAIQGHGFKTLDEGQRVTFDIVEG-P 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 KGPQAANVVK 65


>gi|68164476|gb|AAY87205.1| predicted cold shock family protein [uncultured bacterium
          BAC17H8]
          Length = 83

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 51/72 (70%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFI P+   E G+DVF+H +AV ++GL  L EGQ V+Y+  +   
Sbjct: 15 MAQGTVKWFNTQKGYGFINPD---EDGNDVFVHITAVQNSGLTGLNEGQRVSYELAE-QR 70

Query: 62 NGKYSAENLKLV 73
          NG+++A +L +V
Sbjct: 71 NGRFAAVDLSIV 82


>gi|289640776|ref|ZP_06472947.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
 gi|289509352|gb|EFD30280.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
          Length = 67

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+P+G      DVF+H SA+A+ G   L E Q V +D  Q   
Sbjct: 1  MTQGTVKWFNAEKGFGFISPDG---GSPDVFVHFSAIATNGYKTLEENQRVEFDTTQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENVRPL 67


>gi|163851319|ref|YP_001639362.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|163662924|gb|ABY30291.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
          Length = 69

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+   +  
Sbjct: 1  MATGTVKWFNGTKGYGFIQPD---DGGKDVFVHISAVERAGLRELAEGQKVSYEVEIDRR 57

Query: 62 NGKYSAENLKL 72
          +GK SA  L++
Sbjct: 58 SGKESAGQLQV 68


>gi|92118046|ref|YP_577775.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91800940|gb|ABE63315.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 69

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G    G D+F+H SAV  AGL +L +GQ V+++   +  
Sbjct: 1  MATGTVKWFNATKGFGFIQPDG---GGQDIFVHTSAVERAGLSSLNDGQKVSFEAKTDSM 57

Query: 62 NGKYSAENLKL 72
           GK SAENL++
Sbjct: 58 RGKTSAENLRV 68


>gi|256390666|ref|YP_003112230.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256356892|gb|ACU70389.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 67

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI+ +   E G DVF+H SA+ S+G  +L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNGEKGYGFISQD---EGGPDVFVHFSAIQSSGYRSLEENQRVEFEVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ V
Sbjct: 58 G--AQAENVRPV 67


>gi|110804727|ref|YP_688247.1| cold shock protein CspE [Shigella flexneri 5 str. 8401]
 gi|110614275|gb|ABF02942.1| cold shock protein [Shigella flexneri 5 str. 8401]
 gi|281600039|gb|ADA73023.1| Cold shock protein [Shigella flexneri 2002017]
          Length = 97

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++   N A G
Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 88

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 89 PSAANVIAL 97


>gi|187479893|ref|YP_787918.1| cold shock protein [Bordetella avium 197N]
 gi|115424480|emb|CAJ51034.1| cold shock protein [Bordetella avium 197N]
          Length = 68

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N DKGYGFITP+     G DVF H SA+   G  +L EGQ V +D V++ 
Sbjct: 1  MAQKGKVKWFNADKGYGFITPDS---GGTDVFAHFSAIQGRGYRSLNEGQEVEFD-VKDG 56

Query: 61 ANGKYSAE 68
            G  +AE
Sbjct: 57 PKGPQAAE 64


>gi|259047285|ref|ZP_05737686.1| cold shock protein [Granulicatella adiacens ATCC 49175]
 gi|259036061|gb|EEW37316.1| cold shock protein [Granulicatella adiacens ATCC 49175]
          Length = 75

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G+DVF+H SA+ S G   L EGQ V +D V+  A
Sbjct: 10 MEQGTVKWFNSEKGFGFIERE----GGNDVFVHFSAIQSEGFKTLEEGQAVQFD-VEEGA 64

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 65 RGPQAANVVKL 75


>gi|218677799|ref|ZP_03525696.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894]
          Length = 69

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   +   DVF+H SAV  AG+ +L +GQ ++Y+ V+++ 
Sbjct: 1  MSTGTVKWFNATKGYGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYELVRDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA+ L+
Sbjct: 58 SGKMSADRLQ 67


>gi|332671934|ref|YP_004454942.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332340972|gb|AEE47555.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
          484]
          Length = 67

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+   + G DVF H SA+ S+G  +L E Q V +D  Q   
Sbjct: 1  MPVGTVKWFNAEKGFGFIAPD---DGGPDVFAHYSAIQSSGYRSLEENQKVQFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--PQASNITPL 67


>gi|291085708|ref|ZP_06353810.2| putative cold shock protein [Citrobacter youngae ATCC 29220]
 gi|291070213|gb|EFE08322.1| putative cold shock protein [Citrobacter youngae ATCC 29220]
          Length = 100

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++   N A G
Sbjct: 36  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 91

Query: 64  KYSAENLKL 72
             +A  + L
Sbjct: 92  PSAANVIAL 100


>gi|241896392|ref|ZP_04783688.1| CspA family cold shock transcriptional regulator [Weissella
          paramesenteroides ATCC 33313]
 gi|241870372|gb|EER74123.1| CspA family cold shock transcriptional regulator [Weissella
          paramesenteroides ATCC 33313]
          Length = 75

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKGYGFI+ E    SGDDVF+H SA+ + G  +L EGQ V+++  Q D 
Sbjct: 10 MEQGTVKWFNADKGYGFISRE----SGDDVFVHFSAIQTDGFKSLEEGQAVSFEVQQGD- 64

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 65 RGLQAANVSKL 75


>gi|229020404|ref|ZP_04177159.1| hypothetical protein bcere0030_48910 [Bacillus cereus AH1273]
 gi|229026633|ref|ZP_04182975.1| hypothetical protein bcere0029_49020 [Bacillus cereus AH1272]
 gi|228734666|gb|EEL85318.1| hypothetical protein bcere0029_49020 [Bacillus cereus AH1272]
 gi|228740883|gb|EEL91126.1| hypothetical protein bcere0030_48910 [Bacillus cereus AH1273]
          Length = 89

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ V +D V + 
Sbjct: 23 MNMQGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 77

Query: 61 ANGKYSAENLKL 72
          A G  +A  +KL
Sbjct: 78 ARGPQAANVVKL 89


>gi|269793596|ref|YP_003313051.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
          10542]
 gi|269095781|gb|ACZ20217.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
          10542]
          Length = 67

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI PE   +   DVF H SA+ S+G  +L E Q V +D  Q   
Sbjct: 1  MAVGTVKWFNAEKGFGFIAPE---DGSADVFAHYSAIQSSGYRSLDENQKVEFDITQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPL 67


>gi|192360604|ref|YP_001983030.1| cold-shock protein CspD [Cellvibrio japonicus Ueda107]
 gi|190686769|gb|ACE84447.1| cold-shock protein CspD [Cellvibrio japonicus Ueda107]
          Length = 125

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 6/76 (7%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           ++  G++KW+N  KGYGFI  +   E G+D+F H SA++  G   L  GQ V+++  + D
Sbjct: 41  IMPTGTVKWFNNAKGYGFILAD---EGGEDLFAHYSAISMDGYKTLKAGQQVSFEITRGD 97

Query: 61  ANGKYSAENLKLVPKS 76
                 A N+ + P+S
Sbjct: 98  KG--LHAINI-VAPQS 110


>gi|114328925|ref|YP_746082.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
 gi|114317099|gb|ABI63159.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
          Length = 100

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP KGYGFI P   +    DVF+H SAV  AGL +L EGQ + ++  Q   
Sbjct: 32 MLHGTVKWFNPTKGYGFIAP---STGEKDVFVHISAVQRAGLRSLNEGQQLDFEIEQ-QQ 87

Query: 62 NGKYSAENLK 71
          NG+ +A NL 
Sbjct: 88 NGRAAAVNLT 97


>gi|323357927|ref|YP_004224323.1| cold shock proteins [Microbacterium testaceum StLB037]
 gi|323274298|dbj|BAJ74443.1| cold shock proteins [Microbacterium testaceum StLB037]
          Length = 70

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N +KG+GFI P+   + G DVF H SA+ S G  +L E Q V ++  Q  
Sbjct: 3  MSTQGTVKWFNSEKGFGFIAPD---DGGQDVFAHYSAIQSGGYRSLEENQRVEFEIAQGP 59

Query: 61 ANGKYSAENLKLV 73
                AE+++ +
Sbjct: 60 KG--LQAEDIRPI 70


>gi|302865133|ref|YP_003833770.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
 gi|315501633|ref|YP_004080520.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|302567992|gb|ADL44194.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
          27029]
 gi|315408252|gb|ADU06369.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
          Length = 67

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFI+P+   + G DVF H SA++++G  +L E Q V +D  Q   
Sbjct: 1  MTTGTVKWFNADKGFGFISPD---DGGADVFAHFSAISASGFRSLDENQKVEFDITQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPL 67


>gi|33598908|ref|NP_886551.1| putative cold shock-like protein [Bordetella parapertussis 12822]
 gi|33603987|ref|NP_891547.1| putative cold shock-like protein [Bordetella bronchiseptica RB50]
 gi|33568963|emb|CAE35377.1| putative cold shock-like protein [Bordetella bronchiseptica RB50]
 gi|33575038|emb|CAE39704.1| putative cold shock-like protein [Bordetella parapertussis]
          Length = 68

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N DKGYGFITP+     G DVF H SA+   G  +L EGQ V ++ V++ 
Sbjct: 1  MAQKGKVKWFNADKGYGFITPDS---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56

Query: 61 ANGKYSAE 68
            G  +AE
Sbjct: 57 PKGPQAAE 64


>gi|27379238|ref|NP_770767.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27352389|dbj|BAC49392.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 68

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 49/72 (68%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+NP KGYGFI P GS     DVF+H SAV  AGL  L E Q+V YD V+N 
Sbjct: 1  MPQKGTVKWFNPTKGYGFIKPNGSD---KDVFVHISAVERAGLSTLNENQVVEYDLVEN- 56

Query: 61 ANGKYSAENLKL 72
            GK SAENLK+
Sbjct: 57 -RGKSSAENLKV 67


>gi|115525288|ref|YP_782199.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisA53]
 gi|115519235|gb|ABJ07219.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisA53]
          Length = 67

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P   T    DVF+H SAV  AGL  L E Q + Y+ V+N  
Sbjct: 1  MQKGTVKWFNPTKGYGFIRP---TSGDKDVFVHISAVERAGLSTLNENQPIEYELVEN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKI 66


>gi|237730609|ref|ZP_04561090.1| cold shock protein CspE [Citrobacter sp. 30_2]
 gi|226906148|gb|EEH92066.1| cold shock protein CspE [Citrobacter sp. 30_2]
          Length = 100

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++   N A G
Sbjct: 36  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 91

Query: 64  KYSAENLKL 72
             +A  + L
Sbjct: 92  PSAANVIAL 100


>gi|119718488|ref|YP_925453.1| cold-shock DNA-binding protein family protein [Nocardioides sp.
          JS614]
 gi|119539149|gb|ABL83766.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614]
          Length = 67

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E   + GDDVF+H SA+ + G  +L E Q V +D  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAQE---DGGDDVFVHYSAIQTQGYKSLDENQKVEFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENVRPI 67


>gi|324997373|ref|ZP_08118485.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          sp. P1]
          Length = 67

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFITP+G    G D+F+H SA+ S+G  +L EGQ VT++  Q   
Sbjct: 1  MPQGTVKWFNAEKGYGFITPDG---GGQDLFVHFSAIQSSGYRSLDEGQAVTFEVTQGQ- 56

Query: 62 NGKYSAENL 70
           G  + + +
Sbjct: 57 KGPQADQVV 65


>gi|317401626|gb|EFV82252.1| cold shock protein [Achromobacter xylosoxidans C54]
          Length = 68

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N DKGYGFITP+     G DVF H SA+   G  +L EGQ V ++ V++ 
Sbjct: 1  MAQKGKVKWFNADKGYGFITPDA---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56

Query: 61 ANGKYSAE 68
            G  +AE
Sbjct: 57 PKGPQAAE 64


>gi|91209672|ref|YP_539658.1| cold shock protein CspE [Escherichia coli UTI89]
 gi|237707404|ref|ZP_04537885.1| cold shock protein E [Escherichia sp. 3_2_53FAA]
 gi|332281760|ref|ZP_08394173.1| cold shock protein E [Shigella sp. D9]
 gi|26107003|gb|AAN79187.1|AE016757_91 Cold shock-like protein cspE [Escherichia coli CFT073]
 gi|91071246|gb|ABE06127.1| cold shock-like protein CspE [Escherichia coli UTI89]
 gi|226898614|gb|EEH84873.1| cold shock protein E [Escherichia sp. 3_2_53FAA]
 gi|332104112|gb|EGJ07458.1| cold shock protein E [Shigella sp. D9]
          Length = 97

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++   N A G
Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 88

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 89 PSAANVIAL 97


>gi|86749297|ref|YP_485793.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris HaA2]
 gi|91977723|ref|YP_570382.1| cold-shock protein, DNA-binding [Rhodopseudomonas palustris
          BisB5]
 gi|86572325|gb|ABD06882.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          HaA2]
 gi|91684179|gb|ABE40481.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB5]
          Length = 69

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    + G+DVF+H SAV  AGL  L EGQ V ++   +  
Sbjct: 1  MPTGTVKWFNGQKGFGFIAP---NDGGNDVFVHISAVERAGLSGLAEGQKVNFELKTDKM 57

Query: 62 NGKYSAENLKLV 73
           GK SAENL+LV
Sbjct: 58 RGKTSAENLELV 69


>gi|192292246|ref|YP_001992851.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
 gi|192285995|gb|ACF02376.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
          Length = 69

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P   ++ G+DVF+H SAV  AGL  L EGQ V+++   +  
Sbjct: 1  MTTGTVKWFNGQKGFGFIAP---SDGGNDVFVHISAVERAGLTGLAEGQKVSFEVKTDKM 57

Query: 62 NGKYSAENLKL 72
           GK SAENL L
Sbjct: 58 RGKSSAENLAL 68


>gi|162147832|ref|YP_001602293.1| cold-shock DNA-binding domain-containing protein
          [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542453|ref|YP_002274682.1| cold-shock DNA-binding domain-containing protein
          [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786409|emb|CAP55991.1| putative cold-shock DNA-binding domain protein [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209530130|gb|ACI50067.1| cold-shock DNA-binding domain protein [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 67

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   + G DVF+H +AV +AGL  L E Q V+YD V    
Sbjct: 1  MATGTVKWFNATKGFGFIMPE---DGGKDVFVHITAVQAAGLRGLNENQRVSYDVVTE-- 55

Query: 62 NGKYSAENLKLV 73
           GK +A NLK +
Sbjct: 56 RGKAAASNLKPL 67


>gi|90423823|ref|YP_532193.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisB18]
 gi|90105837|gb|ABD87874.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB18]
          Length = 67

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P   T    DVF+H SAV  AGL  L E Q + Y+ V+N  
Sbjct: 1  MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQTIEYELVEN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKI 66


>gi|163850615|ref|YP_001638658.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218529339|ref|YP_002420155.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240137664|ref|YP_002962135.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
          AM1]
 gi|254560234|ref|YP_003067329.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
          DM4]
 gi|163662220|gb|ABY29587.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218521642|gb|ACK82227.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240007632|gb|ACS38858.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
          AM1]
 gi|254267512|emb|CAX23354.1| cold shock DNA binding protein CspA [Methylobacterium extorquens
          DM4]
          Length = 69

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+     G DVF+H SAV  AGL +L EGQ VTY+   +  
Sbjct: 1  MATGTVKWFNETKGYGFIQPD---NGGKDVFVHISAVERAGLRDLAEGQKVTYEVEIDRK 57

Query: 62 NGKYSAENLKL 72
          +GK SA  L++
Sbjct: 58 SGKESAGQLQV 68


>gi|86356213|ref|YP_468105.1| cold shock protein [Rhizobium etli CFN 42]
 gi|86280315|gb|ABC89378.1| cold shock protein [Rhizobium etli CFN 42]
          Length = 69

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ +L +GQ ++YD V+++ 
Sbjct: 1  MNTGTVKWFNATKGFGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYDLVRDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA+ L+
Sbjct: 58 SGKMSADRLQ 67


>gi|163853346|ref|YP_001641389.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218532203|ref|YP_002423019.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240140762|ref|YP_002965242.1| cold shock protein A [Methylobacterium extorquens AM1]
 gi|254563272|ref|YP_003070367.1| cold shock protein A [Methylobacterium extorquens DM4]
 gi|163664951|gb|ABY32318.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218524506|gb|ACK85091.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240010739|gb|ACS41965.1| cold shock protein A [Methylobacterium extorquens AM1]
 gi|254270550|emb|CAX26553.1| cold shock protein A [Methylobacterium extorquens DM4]
          Length = 69

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++  KGYGFI P+     G DVF+H SAV  AGL  L EGQ V++D   +  
Sbjct: 1  MQTGTVKWFDEVKGYGFIQPDT---GGKDVFVHISAVQQAGLRGLVEGQKVSFDVENDRR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKPAAVNLQ 67


>gi|290510381|ref|ZP_06549751.1| cold shock protein (beta-ribbon, CspA family) [Klebsiella sp.
          1_1_55]
 gi|289777097|gb|EFD85095.1| cold shock protein (beta-ribbon, CspA family) [Klebsiella sp.
          1_1_55]
          Length = 97

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   N A G
Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 88

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 89 PSAANVMAI 97


>gi|91784982|ref|YP_560188.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|187925141|ref|YP_001896783.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|209517460|ref|ZP_03266301.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295677450|ref|YP_003605974.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|296157173|ref|ZP_06840009.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|307730770|ref|YP_003907994.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1003]
 gi|323527133|ref|YP_004229286.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1001]
 gi|91688936|gb|ABE32136.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
 gi|187716335|gb|ACD17559.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|209502114|gb|EEA02129.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295437293|gb|ADG16463.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|295892509|gb|EFG72291.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|307585305|gb|ADN58703.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
 gi|323384135|gb|ADX56226.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 68

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ VT++ VQ   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVTFEVVQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|219882627|ref|YP_002477791.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|219861633|gb|ACL41974.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
          Length = 67

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+   +   DVF H SA+AS+G  +L E Q V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAPD---DGSADVFAHYSAIASSGYRSLDENQKVQFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIQPL 67


>gi|298291123|ref|YP_003693062.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296927634|gb|ADH88443.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 70

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KGYGFI P+     G DVF+H SAV  +GL  L +G+ ++++   + 
Sbjct: 1  MADTGTVKWFNEQKGYGFIQPDS---GGKDVFVHISAVQRSGLQGLRDGEKISFELQTDQ 57

Query: 61 ANGKYSAENLKLV 73
           +GK SA NL+ +
Sbjct: 58 RSGKTSAVNLRPL 70


>gi|83593249|ref|YP_427001.1| cold-shock DNA-binding protein family protein [Rhodospirillum
          rubrum ATCC 11170]
 gi|83576163|gb|ABC22714.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
          11170]
          Length = 68

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G D F+H +A+  AG+ +L EGQ VTYD  +   
Sbjct: 1  MSTGTVKWFNTTKGFGFIAPD---NGGADAFVHITALERAGIHSLNEGQRVTYDL-EMGR 56

Query: 62 NGKYSAENLKL 72
           GK +A N++L
Sbjct: 57 TGKMAAINIRL 67


>gi|116494185|ref|YP_805919.1| cold shock protein [Lactobacillus casei ATCC 334]
 gi|191637512|ref|YP_001986678.1| Cold shock protein A [Lactobacillus casei BL23]
 gi|199597005|ref|ZP_03210438.1| Cold shock protein [Lactobacillus rhamnosus HN001]
 gi|227534311|ref|ZP_03964360.1| CspA family cold shock transcriptional regulator [Lactobacillus
          paracasei subsp. paracasei ATCC 25302]
 gi|229553636|ref|ZP_04442361.1| CspA family cold shock transcriptional regulator [Lactobacillus
          rhamnosus LMS2-1]
 gi|239629560|ref|ZP_04672591.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
          subsp. paracasei 8700:2]
 gi|258507603|ref|YP_003170354.1| cold shock protein [Lactobacillus rhamnosus GG]
 gi|258538778|ref|YP_003173277.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
 gi|301065674|ref|YP_003787697.1| cold shock protein [Lactobacillus casei str. Zhang]
 gi|40644037|emb|CAD92346.1| cold shock protein A [Lactobacillus casei]
 gi|116104335|gb|ABJ69477.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC
          334]
 gi|190711814|emb|CAQ65820.1| Cold shock protein A [Lactobacillus casei BL23]
 gi|199592138|gb|EDZ00212.1| Cold shock protein [Lactobacillus rhamnosus HN001]
 gi|205270982|emb|CAP07854.1| cold-shock protein [Lactobacillus casei BL23]
 gi|227188035|gb|EEI68102.1| CspA family cold shock transcriptional regulator [Lactobacillus
          paracasei subsp. paracasei ATCC 25302]
 gi|229313014|gb|EEN78987.1| CspA family cold shock transcriptional regulator [Lactobacillus
          rhamnosus LMS2-1]
 gi|239528246|gb|EEQ67247.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
          subsp. paracasei 8700:2]
 gi|257147530|emb|CAR86503.1| Cold shock protein [Lactobacillus rhamnosus GG]
 gi|257150454|emb|CAR89426.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
 gi|259648959|dbj|BAI41121.1| cold shock protein [Lactobacillus rhamnosus GG]
 gi|300438081|gb|ADK17847.1| Cold shock protein [Lactobacillus casei str. Zhang]
 gi|327381559|gb|AEA53035.1| Cold-shock domain family protein [Lactobacillus casei LC2W]
 gi|327384722|gb|AEA56196.1| Cold-shock domain family protein [Lactobacillus casei BD-II]
 gi|328476231|gb|EGF46922.1| cold shock protein [Lactobacillus rhamnosus MTCC 5462]
          Length = 66

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKGYGFIT     E G DVF+H SA+   G  +L EGQ V+YD  Q+D 
Sbjct: 1  MQKGTVKWFNADKGYGFIT----GEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSD- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAANVTKL 66


>gi|226311427|ref|YP_002771321.1| cold shock protein [Brevibacillus brevis NBRC 100599]
 gi|226094375|dbj|BAH42817.1| cold shock protein [Brevibacillus brevis NBRC 100599]
          Length = 66

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  E     GDDVF+H SA+ S G  +L EGQ V ++ VQ  +
Sbjct: 1  MQQGIVKWFNAEKGYGFIQVE----GGDDVFVHYSAIQSEGFKSLDEGQKVEFEIVQG-S 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAASVTKL 66


>gi|254502104|ref|ZP_05114255.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
 gi|222438175|gb|EEE44854.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
          Length = 69

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KGYGFI PE   +  +DVF+H SAV  AGL  L EG  V+++ VQ+  
Sbjct: 1  MTIGTVKFFNSTKGYGFIQPE---DGSNDVFVHISAVERAGLATLNEGDKVSFEVVQDRR 57

Query: 62 NGKYSAENLK 71
          +GK +A+NL 
Sbjct: 58 SGKSAADNLS 67


>gi|190890260|ref|YP_001976802.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|218509122|ref|ZP_03507000.1| cold shock protein [Rhizobium etli Brasil 5]
 gi|218513064|ref|ZP_03509904.1| cold shock protein [Rhizobium etli 8C-3]
 gi|218672806|ref|ZP_03522475.1| cold shock protein [Rhizobium etli GR56]
 gi|190695539|gb|ACE89624.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|327190777|gb|EGE57846.1| cold shock protein [Rhizobium etli CNPAF512]
          Length = 69

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ +L +GQ ++Y+ V+++ 
Sbjct: 1  MNTGTVKWFNATKGFGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYELVRDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA+ L+
Sbjct: 58 SGKMSADRLQ 67


>gi|325291550|ref|YP_004277414.1| cold shock protein [Agrobacterium sp. H13-3]
 gi|325059403|gb|ADY63094.1| cold shock protein [Agrobacterium sp. H13-3]
          Length = 69

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   +   DVF+H SAV  AG+ +L +GQ ++Y+  Q+  
Sbjct: 1  MATGTVKWFNATKGYGFIQPD---DGSQDVFVHISAVERAGMTSLNDGQKLSYELTQDRR 57

Query: 62 NGKYSAENL 70
          +GK SA  L
Sbjct: 58 SGKMSAGEL 66


>gi|114764472|ref|ZP_01443697.1| cold shock family protein [Pelagibaca bermudensis HTCC2601]
 gi|114543039|gb|EAU46058.1| cold shock family protein [Roseovarius sp. HTCC2601]
          Length = 68

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PEG      DVF+H SA+  +GL  L + Q V+Y+  Q+  
Sbjct: 1  MPTGTVKWFNTTKGYGFIAPEG---GSKDVFVHISALERSGLTELKDNQKVSYEL-QSGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA NL+L+
Sbjct: 57 DGRESAINLELL 68


>gi|294085741|ref|YP_003552501.1| cold-shock DNA-binding domain-containing protein [Candidatus
          Puniceispirillum marinum IMCC1322]
 gi|292665316|gb|ADE40417.1| Cold-shock DNA-binding domain protein [Candidatus
          Puniceispirillum marinum IMCC1322]
          Length = 76

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 52/73 (71%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFI P+   +SG+DVF+H +AV ++GL  L EGQ VTY+  +   
Sbjct: 8  MSQGTVKWFNTQKGYGFIDPD---DSGNDVFVHITAVQNSGLNGLNEGQKVTYEL-EEQR 63

Query: 62 NGKYSAENLKLVP 74
          NGK +A NL++V 
Sbjct: 64 NGKMAAVNLEVVE 76


>gi|319405285|emb|CBI78899.1| cold shock protein [Bartonella sp. AR 15-3]
          Length = 69

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P    +   DVF+H SA+  +GL +L EGQ ++YD +Q+  
Sbjct: 1  MSTGTVKWFNTNKGFGFIQP---NDGSADVFVHISALERSGLHDLNEGQKISYDILQDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK+SA NL  +
Sbjct: 58 SGKFSAGNLSAL 69


>gi|220933359|ref|YP_002512258.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219994669|gb|ACL71271.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 67

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G DVF+H SA++ +G   L E Q V++D VQ+  
Sbjct: 1  MATGTVKWFNESKGFGFITPD---DGGKDVFVHFSAISGSGFKTLAENQKVSFD-VQDGP 56

Query: 62 NGKYSAENL 70
           G  +A  +
Sbjct: 57 KGPQAANVV 65


>gi|254418731|ref|ZP_05032455.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
          BAL3]
 gi|196184908|gb|EDX79884.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
          BAL3]
          Length = 70

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP KGYGFI P+   + G DVF+H SAV  AGL  L E Q V+Y+  ++  
Sbjct: 1  MATGTVKWFNPTKGYGFIQPD---DGGKDVFVHISAVEGAGLRGLDENQKVSYELERDKR 57

Query: 62 NGKYSAENLKLV 73
          +GK SA  L+ +
Sbjct: 58 SGKESAGQLQTI 69


>gi|319898519|ref|YP_004158612.1| cold shock protein [Bartonella clarridgeiae 73]
 gi|319402483|emb|CBI76026.1| cold shock protein [Bartonella clarridgeiae 73]
          Length = 69

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    +   DVF+H SAV  +GL +L EGQ ++YD +Q+  
Sbjct: 1  MSTGTVKWFNTTKGFGFIQP---NDGSADVFVHISAVERSGLNDLNEGQKISYDVLQDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK++A NL  +
Sbjct: 58 SGKFAAGNLSAL 69


>gi|134100407|ref|YP_001106068.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|291007339|ref|ZP_06565312.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|133913030|emb|CAM03143.1| cold-shock DNA-binding domain protein [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 67

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFITP+G    G DVF H SA+ + G   L E Q V ++  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFITPDG---GGADVFAHYSAIDATGFRTLDENQRVEFEIAQG-P 56

Query: 62 NGKYSAE 68
           G  +A+
Sbjct: 57 KGPQAAQ 63


>gi|188583612|ref|YP_001927057.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
 gi|179347110|gb|ACB82522.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
          Length = 69

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW++  KGYGFI P+     G DVF+H SAV  AGL  L EGQ VT+D   +  
Sbjct: 1  MNTGTVKWFDEIKGYGFIQPDT---GGKDVFVHISAVQQAGLRGLVEGQKVTFDVENDRR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKPAAVNLQ 67


>gi|88856605|ref|ZP_01131262.1| cold shock protein [marine actinobacterium PHSC20C1]
 gi|88814259|gb|EAR24124.1| cold shock protein [marine actinobacterium PHSC20C1]
          Length = 67

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI PE   +   DVF H SA+A+ G  +L E Q V +D  Q   
Sbjct: 1  MALGTVKWFNAEKGFGFIAPE---DGSPDVFAHYSAIATNGYKSLDENQKVEFDITQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPI 67


>gi|284990416|ref|YP_003408970.1| cold-shock DNA-binding domain-containing protein
          [Geodermatophilus obscurus DSM 43160]
 gi|284063661|gb|ADB74599.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
          DSM 43160]
          Length = 67

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GF TP+G    G DVF+H SA+ ++G  +L EGQ +++D  Q   
Sbjct: 1  MPEGTVKWFNAEKGFGFATPDG---GGPDVFVHYSAIQTSGYRSLDEGQRISFDIEQGQ- 56

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 57 KGPQAANV 64


>gi|119898894|ref|YP_934107.1| cold shock-like protein [Azoarcus sp. BH72]
 gi|119671307|emb|CAL95220.1| cold shock-like protein [Azoarcus sp. BH72]
          Length = 67

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITPE     G+D+F H SA+  +G  +L EGQ V ++  +   
Sbjct: 1  MATGTVKWFNDAKGFGFITPE---NGGEDLFAHFSAIQGSGFKSLAEGQRVEFEITRGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--QQASNIRPL 67


>gi|260597282|ref|YP_003209853.1| Cold shock-like protein cspD [Cronobacter turicensis z3032]
 gi|260216459|emb|CBA29590.1| Cold shock-like protein cspD [Cronobacter turicensis z3032]
          Length = 99

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q   
Sbjct: 24 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQVVRFDVHQG-P 79

Query: 62 NGKYSAENLKLVPKSSN 78
           G +++    +VP  + 
Sbjct: 80 KGNHASV---IVPLEAE 93


>gi|331699456|ref|YP_004335695.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326954145|gb|AEA27842.1| cold-shock DNA-binding domain protein [Pseudonocardia
          dioxanivorans CB1190]
          Length = 67

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI     T+ G DVF+H SA+ + G   L EG  V ++      
Sbjct: 1  MAQGTVKWFNSEKGYGFIA----TDGGPDVFVHYSAIQADGFRTLDEGDRVEFE-TTAGR 55

Query: 62 NGKYSAENLKLV 73
          +G+  AE ++ +
Sbjct: 56 DGRSQAEAVRRI 67


>gi|238062414|ref|ZP_04607123.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|237884225|gb|EEP73053.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
          Length = 67

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFI+P+G    G DVF H SA++++G  +L E Q V +D  Q   
Sbjct: 1  MTTGTVKWFNADKGFGFISPDG---GGADVFAHFSAISASGFRSLDENQKVEFDITQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPL 67


>gi|212639316|ref|YP_002315836.1| cold shock protein, CspA family [Anoxybacillus flavithermus WK1]
 gi|212560796|gb|ACJ33851.1| Cold shock protein, CspA family [Anoxybacillus flavithermus WK1]
          Length = 66

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI  E     GDDVF+H +A+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQNGKVKWFNNEKGYGFIEVE----GGDDVFVHFTAIQGEGYKTLEEGQAVSFEIVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|186475334|ref|YP_001856804.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184191793|gb|ACC69758.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 68

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++ VQ   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVSFEVVQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|293602670|ref|ZP_06685111.1| CspA family cold shock transcriptional regulator [Achromobacter
          piechaudii ATCC 43553]
 gi|311109651|ref|YP_003982504.1| cold shock protein CspB [Achromobacter xylosoxidans A8]
 gi|292818861|gb|EFF77901.1| CspA family cold shock transcriptional regulator [Achromobacter
          piechaudii ATCC 43553]
 gi|310764340|gb|ADP19789.1| cold shock protein CspB [Achromobacter xylosoxidans A8]
          Length = 68

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N DKGYGFITP+     G DVF H SA+   G  +L EGQ V ++ V++ 
Sbjct: 1  MAQKGKVKWFNADKGYGFITPDV---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56

Query: 61 ANGKYSAE 68
            G  +AE
Sbjct: 57 PKGPQAAE 64


>gi|258590957|emb|CBE67252.1| Cold shock protein, DNA binding [NC10 bacterium 'Dutch sediment']
          Length = 68

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KGYGFI  E     GDDVF+H SA++ +G  +L EGQ V +D V + 
Sbjct: 1  MRVTGTVKWFNDAKGYGFIARE----DGDDVFVHYSAISGSGFRSLNEGQAVEFDVV-DG 55

Query: 61 ANGKYSAENLK 71
            GK +A   +
Sbjct: 56 PKGKQAANVTR 66


>gi|83592856|ref|YP_426608.1| cold-shock DNA-binding protein family protein [Rhodospirillum
          rubrum ATCC 11170]
 gi|83575770|gb|ABC22321.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
          11170]
          Length = 68

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   +   DVF+H +AV  AGL +L EGQ V ++  +   
Sbjct: 1  MSTGTVKWFNGTKGYGFIEPD---DGSADVFVHITAVQQAGLDSLREGQKVAFEL-ERGR 56

Query: 62 NGKYSAENLKLV 73
          +GK +A NLK +
Sbjct: 57 SGKMAASNLKPL 68


>gi|134099205|ref|YP_001104866.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|291009987|ref|ZP_06567960.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|133911828|emb|CAM01941.1| cold-shock DNA-binding domain protein [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 67

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+     G DVF+H SA+ S G  +L E Q VTYD  Q   
Sbjct: 1  MTQGTVKWFNSEKGFGFIAPDA---GGPDVFVHYSAIDSTGFRSLEENQQVTYDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AE ++ +
Sbjct: 58 G--PQAEVVRAL 67


>gi|269792002|ref|YP_003316906.1| cold-shock DNA-binding domain-containing protein
          [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099637|gb|ACZ18624.1| cold-shock DNA-binding domain protein [Thermanaerovibrio
          acidaminovorans DSM 6589]
          Length = 67

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  KGYGFIT    T+ G DVF H SA+   G   L EGQ V+ D V+  
Sbjct: 1  MATQGTVKWFNATKGYGFIT----TDEGRDVFCHFSAIKMDGYRTLEEGQRVSLD-VEMG 55

Query: 61 ANGKYSAENLKL 72
            G+ +A  +KL
Sbjct: 56 PKGEQAANVVKL 67


>gi|42784343|ref|NP_981590.1| cold shock protein CspC [Bacillus cereus ATCC 10987]
 gi|206976819|ref|ZP_03237722.1| cold shock protein CspC [Bacillus cereus H3081.97]
 gi|217962672|ref|YP_002341246.1| cold shock protein CspC [Bacillus cereus AH187]
 gi|222098643|ref|YP_002532701.1| cold shock protein cspc [Bacillus cereus Q1]
 gi|42740274|gb|AAS44198.1| cold shock protein CspC [Bacillus cereus ATCC 10987]
 gi|206744954|gb|EDZ56358.1| cold shock protein CspC [Bacillus cereus H3081.97]
 gi|217063489|gb|ACJ77739.1| cold shock protein CspC [Bacillus cereus AH187]
 gi|221242702|gb|ACM15412.1| cold shock protein CspC [Bacillus cereus Q1]
 gi|324329136|gb|ADY24396.1| cold shock protein CspC [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 67

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ V +D V+  
Sbjct: 1  MNMQGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVEG- 55

Query: 61 ANGKYSAENLKL 72
          A G  +A  +KL
Sbjct: 56 ARGPQAANVVKL 67


>gi|21957922|gb|AAM84743.1|AE013720_7 cold shock protein [Yersinia pestis KIM 10]
 gi|45435809|gb|AAS61366.1| putative cold shock protein [Yersinia pestis biovar Microtus str.
          91001]
          Length = 84

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++   N A G
Sbjct: 20 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFEIT-NGAKG 75

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 76 PSAANVIAI 84


>gi|188583863|ref|YP_001927308.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
 gi|179347361|gb|ACB82773.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
          Length = 69

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   +   DVF+H SAV  AGL  L EGQ V+Y+   +  
Sbjct: 1  MSTGTVKWFNEQKGFGFIQPE---DGSKDVFVHISAVERAGLRGLAEGQKVSYELETDRR 57

Query: 62 NGKYSAENLKL 72
          +GK SA  L++
Sbjct: 58 SGKQSAGQLQV 68


>gi|302868803|ref|YP_003837440.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
 gi|315504727|ref|YP_004083614.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|302571662|gb|ADL47864.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
          27029]
 gi|315411346|gb|ADU09463.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
          Length = 67

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ S+G   L EGQ V ++  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGPDVFVHYSAIQSSGYRELNEGQKVEFEVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+N++ +
Sbjct: 58 G--PQADNVRPM 67


>gi|119383705|ref|YP_914761.1| cold-shock DNA-binding domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119373472|gb|ABL69065.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
          PD1222]
          Length = 68

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L + Q + Y+  Q+  
Sbjct: 1  MATGTVKWFNATKGYGFIAPD---DGGKDVFVHISAVERAGLTGLNDNQKIAYEL-QSGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA +LKL+
Sbjct: 57 DGRSSASDLKLL 68


>gi|75675791|ref|YP_318212.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
 gi|74420661|gb|ABA04860.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
          Nb-255]
          Length = 67

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P   T    DVF+H SAV  AGL  L E Q + YD V+N  
Sbjct: 1  MQKGTVKWFNPTKGYGFIKP---TTGDRDVFVHISAVERAGLSTLDENQTIEYDLVEN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKI 66


>gi|21222688|ref|NP_628467.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|302559987|ref|ZP_07312329.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
 gi|8248794|emb|CAB93055.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|11933021|emb|CAC19350.1| cold-shock like protein [Streptomyces coelicolor]
 gi|302477605|gb|EFL40698.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
          Length = 67

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ ++L
Sbjct: 57 G--PQADMVRL 65


>gi|329889214|ref|ZP_08267557.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
          ATCC 11568]
 gi|328844515|gb|EGF94079.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
          ATCC 11568]
          Length = 70

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L E Q V+Y+  ++  
Sbjct: 1  MATGTVKWFNSTKGYGFIQPD---DGGKDVFVHISAVEQAGLRGLDENQKVSYEIERDRR 57

Query: 62 NGKYSAENLK 71
          +GK SA  LK
Sbjct: 58 SGKESAGQLK 67


>gi|284989363|ref|YP_003407917.1| cold-shock DNA-binding domain-containing protein
          [Geodermatophilus obscurus DSM 43160]
 gi|284062608|gb|ADB73546.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
          DSM 43160]
          Length = 66

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +     G DVF+H SA+   G  +L EGQ VT++ VQ + 
Sbjct: 1  MAQGTVKWFNAEKGFGFIAVD----GGQDVFVHYSAIQMDGYKSLDEGQRVTFEVVQGEK 56

Query: 62 NGKYSAE 68
            +  A 
Sbjct: 57 GPQADAV 63


>gi|223946111|gb|ACN27139.1| unknown [Zea mays]
          Length = 187

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            RG++KW+N  KG+GFI+PE   +  +D+F+H+S++ S G  +L EG+ V +   + D 
Sbjct: 6  RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61

Query: 62 NGKYSAENLK 71
          +G+  A ++ 
Sbjct: 62 DGRTKAVDVT 71


>gi|260432172|ref|ZP_05786143.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416000|gb|EEX09259.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 68

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G DVF+H SA+  +GL  L + Q VTYD VQ+  
Sbjct: 1  MANGTVKWFNTTKGFGFIAPET---GGKDVFVHISALERSGLTGLADNQKVTYD-VQSGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SAENL+LV
Sbjct: 57 DGRESAENLQLV 68


>gi|167648239|ref|YP_001685902.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
          K31]
 gi|167350669|gb|ABZ73404.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
          Length = 68

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ +TY+  +++ 
Sbjct: 1  MATGTVKWFNGTKGFGFIQPD---DGGADVFVHISAVERAGLRGLDEGQKITYELERDNR 57

Query: 62 NGKYSAENLK 71
          +GK SA  L+
Sbjct: 58 SGKMSAGQLQ 67


>gi|319406855|emb|CBI80490.1| cold shock protein [Bartonella sp. 1-1C]
          Length = 69

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P    +   DVF+H SAV  +GL NL EGQ ++YD +Q+  
Sbjct: 1  MSKGTVKWFNSNKGFGFIQP---NDGSADVFVHISAVERSGLQNLNEGQKISYDVLQDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK++A NL  +
Sbjct: 58 SGKFAAGNLSAL 69


>gi|302335495|ref|YP_003800702.1| cold-shock DNA-binding protein family [Olsenella uli DSM 7084]
 gi|301319335|gb|ADK67822.1| cold-shock DNA-binding protein family [Olsenella uli DSM 7084]
          Length = 67

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NPDKGYGFI+ E     GDD+F+H S +   G   L EGQ V +D      
Sbjct: 1  MAQGTVKWFNPDKGYGFISRE----DGDDLFVHYSEIQMDGFKTLDEGQAVEFDIT-TGQ 55

Query: 62 NGKYSAENLK 71
          NGK  A N++
Sbjct: 56 NGKLQASNVR 65


>gi|209884462|ref|YP_002288319.1| hypothetical protein OCAR_5322 [Oligotropha carboxidovorans OM5]
 gi|209872658|gb|ACI92454.1| conserved domain protein [Oligotropha carboxidovorans OM5]
          Length = 69

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    + G+DVF+H SAV  AGL  L EGQ V ++   ++ 
Sbjct: 1  MTIGTVKWFNGQKGFGFIAP---QDGGNDVFVHISAVERAGLTGLAEGQKVEFEAKTDNM 57

Query: 62 NGKYSAENLKLV 73
           GK SAENL LV
Sbjct: 58 RGKTSAENLSLV 69


>gi|116250366|ref|YP_766204.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|209547826|ref|YP_002279743.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|218658368|ref|ZP_03514298.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771]
 gi|241203000|ref|YP_002974096.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|115255014|emb|CAK06088.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|209533582|gb|ACI53517.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|240856890|gb|ACS54557.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 69

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ +L +GQ ++Y+ V+++ 
Sbjct: 1  MSTGTVKWFNATKGFGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYELVRDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA+ L+
Sbjct: 58 SGKMSADRLQ 67


>gi|115375489|ref|ZP_01462749.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821373|ref|YP_003953731.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1]
 gi|2493774|sp|P72366|CSPA_STIAD RecName: Full=Cold shock-like protein CspA
 gi|1616777|gb|AAB16850.1| cold shock-like protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367532|gb|EAU66507.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394445|gb|ADO71904.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1]
          Length = 68

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 5/73 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +G    G+DVF H SA+   G   L EGQ V ++  +   
Sbjct: 1  MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHSAINMDGFRTLQEGQKVEFEVTRGPK 57

Query: 62 NGKYSAENLKLVP 74
               A+N++ +P
Sbjct: 58 G--LQAQNVRSIP 68


>gi|27377058|ref|NP_768587.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|12620649|gb|AAG60925.1|AF322013_44 ID534 [Bradyrhizobium japonicum]
 gi|27350201|dbj|BAC47212.1| blr1947 [Bradyrhizobium japonicum USDA 110]
          Length = 120

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+NP KGYGF+ P+   + G DVF+H SAV  AG  +L EG  V Y+ V N  +GK
Sbjct: 56  GTVKWFNPTKGYGFVAPD---DGGKDVFVHISAVEKAGYTSLVEGAKVGYELVTN-RSGK 111

Query: 65  YSAENLKL 72
            +AENL+L
Sbjct: 112 QAAENLRL 119


>gi|315641419|ref|ZP_07896492.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
 gi|315482806|gb|EFU73329.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
          Length = 72

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFIT E     G DVF+H SA+   G   L EGQ VT+D  ++D 
Sbjct: 7  MEQGTVKWFNAEKGFGFITRE----DGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESD- 61

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 62 RGPQATNVVK 71


>gi|92118897|ref|YP_578626.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91801791|gb|ABE64166.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 69

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G    G+DVF+H SAV  AGL  L EGQ V+++   +  
Sbjct: 1  MSTGTVKWFNSQKGFGFIQPDG---GGNDVFVHISAVQRAGLNGLGEGQKVSFETKTDKM 57

Query: 62 NGKYSAENLKL 72
           GK SAENL L
Sbjct: 58 RGKASAENLSL 68


>gi|319403844|emb|CBI77430.1| cold shock protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 69

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P    +   DVF+H SAV  +GL NL EGQ ++YD +Q+  
Sbjct: 1  MSKGTVKWFNTNKGFGFIQP---NDGSADVFVHISAVERSGLHNLNEGQKISYDVLQDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK++A NL  +
Sbjct: 58 SGKFAAGNLSAL 69


>gi|126731182|ref|ZP_01746990.1| cold shock family protein [Sagittula stellata E-37]
 gi|126708484|gb|EBA07542.1| cold shock family protein [Sagittula stellata E-37]
          Length = 68

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFI P+   E G DVF+H SAV  +GL  L + Q V+Y+  Q   
Sbjct: 1  MAKGTVKWFNTTKGYGFIQPD---EGGKDVFVHISAVERSGLTGLADNQKVSYEL-QTGR 56

Query: 62 NGKYSAENLKLV 73
          +GK SA NL+L+
Sbjct: 57 DGKQSAGNLELL 68


>gi|159036600|ref|YP_001535853.1| cold-shock DNA-binding domain-containing protein [Salinispora
          arenicola CNS-205]
 gi|157915435|gb|ABV96862.1| cold-shock DNA-binding domain protein [Salinispora arenicola
          CNS-205]
          Length = 67

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFI+P+G    G DVF H SA++++G  +L E Q V ++  Q   
Sbjct: 1  MATGTVKWFNADKGFGFISPDG---GGADVFAHFSAISASGFRSLDENQKVEFEITQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPL 67


>gi|33594722|ref|NP_882366.1| putative cold shock-like protein [Bordetella pertussis Tohama I]
 gi|33564798|emb|CAE44126.1| putative cold shock-like protein [Bordetella pertussis Tohama I]
 gi|332384133|gb|AEE68980.1| putative cold shock-like protein [Bordetella pertussis CS]
          Length = 68

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N DKGYGFITP+     G DVF H SA+   G  +L EGQ V ++ V++ 
Sbjct: 1  MAQKGKVKWFNADKGYGFITPDS---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDV 56

Query: 61 ANGKYSAE 68
            G  +AE
Sbjct: 57 PKGPQAAE 64


>gi|229032808|ref|ZP_04188764.1| hypothetical protein bcere0028_48380 [Bacillus cereus AH1271]
 gi|228728481|gb|EEL79501.1| hypothetical protein bcere0028_48380 [Bacillus cereus AH1271]
          Length = 67

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ V +D V + 
Sbjct: 1  MNMQGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55

Query: 61 ANGKYSAENLKL 72
          A G  +A  +KL
Sbjct: 56 ARGPQAANVIKL 67


>gi|260461754|ref|ZP_05810000.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|319785303|ref|YP_004144779.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|259032395|gb|EEW33660.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|317171191|gb|ADV14729.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 70

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G DVF+H SAV  AGL  L EGQ + Y+  Q+  
Sbjct: 1  MATGTVKWFNSTKGFGFIQPD---NGGQDVFVHISAVERAGLSTLNEGQKINYEVEQDRR 57

Query: 62 NGKYSAENLK 71
           GK SA +L 
Sbjct: 58 TGKSSAGSLS 67


>gi|163840196|ref|YP_001624601.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
 gi|162953672|gb|ABY23187.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
          Length = 100

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFITP+ S     DVF+H S + + G   L E Q V ++  Q   
Sbjct: 33 MAQGTVKWFNAEKGFGFITPDESPN---DVFVHYSEIQTKGFRTLDENQRVEFEIGQGAK 89

Query: 62 NGKYSAENL 70
            + +  N+
Sbjct: 90 GPQATGVNV 98


>gi|114326681|ref|YP_743838.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
 gi|114314855|gb|ABI60915.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
          Length = 83

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KGYGFI P+G    G DVF+H SAV  AGL  L +GQ +++D  +  
Sbjct: 15 LMPTGTVKWFNATKGYGFIHPDG---GGADVFVHISAVEKAGLSKLDDGQKLSFDL-EAG 70

Query: 61 ANGKYSAENLKL 72
            GK SA NLKL
Sbjct: 71 RQGKTSAVNLKL 82


>gi|254388506|ref|ZP_05003740.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|294814077|ref|ZP_06772720.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442478|ref|ZP_08217212.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|197702227|gb|EDY48039.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|294326676|gb|EFG08319.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064]
          Length = 67

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ +KL
Sbjct: 57 G--PQADMVKL 65


>gi|317123476|ref|YP_004097588.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
 gi|315587564|gb|ADU46861.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
          Length = 67

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +G    G DVF+H SA+ S G  +L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAIQSNGYRSLDEAQRVEFEVTQGPK 57

Query: 62 NGKYSAE 68
            +  A 
Sbjct: 58 GPQADAV 64


>gi|30023224|ref|NP_834855.1| cold shock protein [Bacillus cereus ATCC 14579]
 gi|47567403|ref|ZP_00238116.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|47568473|ref|ZP_00239173.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|47569297|ref|ZP_00239982.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|49188026|ref|YP_031279.1| cold shock protein CspC [Bacillus anthracis str. Sterne]
 gi|49481145|ref|YP_039179.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|52140373|ref|YP_086455.1| cold shock protein [Bacillus cereus E33L]
 gi|65317162|ref|ZP_00390121.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012]
 gi|75759030|ref|ZP_00739138.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|118480228|ref|YP_897379.1| cold-shock DNA-binding protein family protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|163942875|ref|YP_001647759.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|165869975|ref|ZP_02214632.1| cold shock protein CspC [Bacillus anthracis str. A0488]
 gi|167635267|ref|ZP_02393582.1| cold shock protein CspC [Bacillus anthracis str. A0442]
 gi|167640473|ref|ZP_02398736.1| cold shock protein CspC [Bacillus anthracis str. A0193]
 gi|170687914|ref|ZP_02879127.1| cold shock protein CspC [Bacillus anthracis str. A0465]
 gi|170707764|ref|ZP_02898215.1| cold shock protein CspC [Bacillus anthracis str. A0389]
 gi|177653014|ref|ZP_02935341.1| cold shock protein CspC [Bacillus anthracis str. A0174]
 gi|190567802|ref|ZP_03020714.1| cold shock protein CspC [Bacillus anthracis Tsiankovskii-I]
 gi|196032913|ref|ZP_03100326.1| cold shock protein CspC [Bacillus cereus W]
 gi|196045641|ref|ZP_03112871.1| cold shock protein CspC [Bacillus cereus 03BB108]
 gi|206970208|ref|ZP_03231161.1| cold shock protein CspC [Bacillus cereus AH1134]
 gi|218906366|ref|YP_002454200.1| cold shock protein CspC [Bacillus cereus AH820]
 gi|225867154|ref|YP_002752532.1| cold shock protein CspC [Bacillus cereus 03BB102]
 gi|228903664|ref|ZP_04067784.1| hypothetical protein bthur0014_48220 [Bacillus thuringiensis IBL
          4222]
 gi|228930192|ref|ZP_04093201.1| hypothetical protein bthur0010_48740 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228936477|ref|ZP_04099275.1| hypothetical protein bthur0009_49140 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228942325|ref|ZP_04104864.1| hypothetical protein bthur0008_49550 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228948909|ref|ZP_04111182.1| hypothetical protein bthur0007_50310 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228961427|ref|ZP_04123040.1| hypothetical protein bthur0005_48710 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228975255|ref|ZP_04135813.1| hypothetical protein bthur0003_50020 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228981893|ref|ZP_04142188.1| hypothetical protein bthur0002_50520 [Bacillus thuringiensis
          Bt407]
 gi|228988414|ref|ZP_04148505.1| hypothetical protein bthur0001_50690 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|229014358|ref|ZP_04171477.1| hypothetical protein bmyco0001_47610 [Bacillus mycoides DSM 2048]
 gi|229082403|ref|ZP_04214866.1| hypothetical protein bcere0023_50200 [Bacillus cereus Rock4-2]
 gi|229094285|ref|ZP_04225361.1| hypothetical protein bcere0021_49920 [Bacillus cereus Rock3-42]
 gi|229124697|ref|ZP_04253878.1| hypothetical protein bcere0016_49780 [Bacillus cereus 95/8201]
 gi|229130436|ref|ZP_04259393.1| hypothetical protein bcere0015_48700 [Bacillus cereus BDRD-Cer4]
 gi|229147720|ref|ZP_04276063.1| hypothetical protein bcere0012_48450 [Bacillus cereus BDRD-ST24]
 gi|229153345|ref|ZP_04281523.1| hypothetical protein bcere0011_48750 [Bacillus cereus m1550]
 gi|229175861|ref|ZP_04303359.1| hypothetical protein bcere0006_49320 [Bacillus cereus MM3]
 gi|229187401|ref|ZP_04314544.1| hypothetical protein bcere0004_49360 [Bacillus cereus BGSC 6E1]
 gi|229193438|ref|ZP_04320385.1| hypothetical protein bcere0002_50820 [Bacillus cereus ATCC 10876]
 gi|229602080|ref|YP_002869410.1| cold shock protein CspC [Bacillus anthracis str. A0248]
 gi|254686386|ref|ZP_05150245.1| cold shock protein CspC [Bacillus anthracis str. CNEVA-9066]
 gi|254744321|ref|ZP_05202001.1| cold shock protein CspC [Bacillus anthracis str. Kruger B]
 gi|254755619|ref|ZP_05207652.1| cold shock protein CspC [Bacillus anthracis str. Vollum]
 gi|254757074|ref|ZP_05209102.1| cold shock protein CspC [Bacillus anthracis str. Australia 94]
 gi|296505610|ref|YP_003667310.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|29898784|gb|AAP12056.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gi|47554068|gb|EAL12434.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|47554864|gb|EAL13215.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|47556024|gb|EAL14362.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|49181953|gb|AAT57329.1| cold shock protein CspC [Bacillus anthracis str. Sterne]
 gi|49332701|gb|AAT63347.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|51973842|gb|AAU15392.1| cold shock protein [Bacillus cereus E33L]
 gi|74493496|gb|EAO56604.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|118419453|gb|ABK87872.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
          str. Al Hakam]
 gi|163865072|gb|ABY46131.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
 gi|164714298|gb|EDR19818.1| cold shock protein CspC [Bacillus anthracis str. A0488]
 gi|167511516|gb|EDR86899.1| cold shock protein CspC [Bacillus anthracis str. A0193]
 gi|167529310|gb|EDR92062.1| cold shock protein CspC [Bacillus anthracis str. A0442]
 gi|170127321|gb|EDS96197.1| cold shock protein CspC [Bacillus anthracis str. A0389]
 gi|170668023|gb|EDT18773.1| cold shock protein CspC [Bacillus anthracis str. A0465]
 gi|172081789|gb|EDT66859.1| cold shock protein CspC [Bacillus anthracis str. A0174]
 gi|190561218|gb|EDV15191.1| cold shock protein CspC [Bacillus anthracis Tsiankovskii-I]
 gi|195994342|gb|EDX58297.1| cold shock protein CspC [Bacillus cereus W]
 gi|196023472|gb|EDX62149.1| cold shock protein CspC [Bacillus cereus 03BB108]
 gi|206734785|gb|EDZ51954.1| cold shock protein CspC [Bacillus cereus AH1134]
 gi|218536289|gb|ACK88687.1| cold shock protein CspC [Bacillus cereus AH820]
 gi|225789362|gb|ACO29579.1| cold shock protein CspC [Bacillus cereus 03BB102]
 gi|228589970|gb|EEK47842.1| hypothetical protein bcere0002_50820 [Bacillus cereus ATCC 10876]
 gi|228596105|gb|EEK53782.1| hypothetical protein bcere0004_49360 [Bacillus cereus BGSC 6E1]
 gi|228607594|gb|EEK64918.1| hypothetical protein bcere0006_49320 [Bacillus cereus MM3]
 gi|228629949|gb|EEK86600.1| hypothetical protein bcere0011_48750 [Bacillus cereus m1550]
 gi|228635733|gb|EEK92220.1| hypothetical protein bcere0012_48450 [Bacillus cereus BDRD-ST24]
 gi|228653031|gb|EEL08912.1| hypothetical protein bcere0015_48700 [Bacillus cereus BDRD-Cer4]
 gi|228658792|gb|EEL14451.1| hypothetical protein bcere0016_49780 [Bacillus cereus 95/8201]
 gi|228689138|gb|EEL42961.1| hypothetical protein bcere0021_49920 [Bacillus cereus Rock3-42]
 gi|228700835|gb|EEL53358.1| hypothetical protein bcere0023_50200 [Bacillus cereus Rock4-2]
 gi|228746958|gb|EEL96842.1| hypothetical protein bmyco0001_47610 [Bacillus mycoides DSM 2048]
 gi|228771270|gb|EEM19745.1| hypothetical protein bthur0001_50690 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|228778005|gb|EEM26277.1| hypothetical protein bthur0002_50520 [Bacillus thuringiensis
          Bt407]
 gi|228784534|gb|EEM32555.1| hypothetical protein bthur0003_50020 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228798241|gb|EEM45241.1| hypothetical protein bthur0005_48710 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228810665|gb|EEM57013.1| hypothetical protein bthur0007_50310 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228817369|gb|EEM63455.1| hypothetical protein bthur0008_49550 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228823309|gb|EEM69143.1| hypothetical protein bthur0009_49140 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228829477|gb|EEM75105.1| hypothetical protein bthur0010_48740 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228855932|gb|EEN00472.1| hypothetical protein bthur0014_48220 [Bacillus thuringiensis IBL
          4222]
 gi|229266488|gb|ACQ48125.1| cold shock protein CspC [Bacillus anthracis str. A0248]
 gi|296326662|gb|ADH09590.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|326942978|gb|AEA18874.1| cold shock protein [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 67

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ V +D V + 
Sbjct: 1  MNMQGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55

Query: 61 ANGKYSAENLKL 72
          A G  +A  +KL
Sbjct: 56 ARGPQAANVVKL 67


>gi|302037950|ref|YP_003798272.1| cold shock protein CspA [Candidatus Nitrospira defluvii]
 gi|300606014|emb|CBK42347.1| Cold shock protein CspA [Candidatus Nitrospira defluvii]
          Length = 72

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  KG+GFI      + GDDVF+H SA+   G   L EG+ V +D VQ  
Sbjct: 1  MKTKGTVKWFNDRKGFGFI----RLDGGDDVFVHYSALQGEGFKTLKEGENVEFDIVQG- 55

Query: 61 ANGKYSAENLKLVPKSS 77
          A G  +A  LK +  +S
Sbjct: 56 AKGPQAANVLKDLATAS 72


>gi|217977240|ref|YP_002361387.1| cold-shock DNA-binding domain protein [Methylocella silvestris
          BL2]
 gi|217502616|gb|ACK50025.1| cold-shock DNA-binding domain protein [Methylocella silvestris
          BL2]
          Length = 70

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G+D F+H SAV  AG+ +L EGQ V ++ V +  
Sbjct: 1  MTTGTVKWFNSQKGFGFIAPD---DGGNDAFVHISAVERAGIGDLQEGQKVGFELVADRK 57

Query: 62 NGKYSAENLKLV 73
          +GK SA+NLKL+
Sbjct: 58 SGKMSADNLKLL 69


>gi|197106226|ref|YP_002131603.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
 gi|196479646|gb|ACG79174.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
          Length = 69

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AG+  L EGQ ++++  ++  
Sbjct: 1  MTSGTVKWFNATKGFGFIQPD---DGGTDVFVHISAVERAGMAGLHEGQKLSFEVQKDPR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKSAAANLQ 67


>gi|126739741|ref|ZP_01755432.1| cold shock family protein [Roseobacter sp. SK209-2-6]
 gi|126718973|gb|EBA15684.1| cold shock family protein [Roseobacter sp. SK209-2-6]
          Length = 68

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE   + G DVF+H SAV  +GL  L + Q V+Y+  Q   
Sbjct: 1  MATGTVKWFNTTKGYGFIAPE---DGGKDVFVHISAVERSGLTGLADNQKVSYEL-QPGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA +L L+
Sbjct: 57 DGRESAVDLALL 68


>gi|326332603|ref|ZP_08198871.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325949604|gb|EGD41676.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 67

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI  +G    G+DVF+H SA+ S G  +L E Q V +D  Q   
Sbjct: 1  MAQGTVKWFNADKGFGFIAQDG---GGEDVFVHFSAIQSNGYKSLDENQKVEFDVTQGPK 57

Query: 62 NGKYSAENLKL 72
               AEN+++
Sbjct: 58 G--PQAENVRV 66


>gi|329120534|ref|ZP_08249198.1| cold shock domain protein CspD [Neisseria bacilliformis ATCC
          BAA-1200]
 gi|327461273|gb|EGF07605.1| cold shock domain protein CspD [Neisseria bacilliformis ATCC
          BAA-1200]
          Length = 67

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E GDD+F H SA+   G   L EGQ V++D   +  
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---EGGDDLFAHFSAINMDGFKTLKEGQKVSFDVT-SGP 56

Query: 62 NGKYSAE 68
           G  +A 
Sbjct: 57 KGLQAAN 63


>gi|74095589|emb|CAJ27355.1| strongly similar to cold shock-like protein cspE [Cronobacter
          sakazakii]
          Length = 79

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   N A G
Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 70

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 71 PSAANVIAL 79


>gi|73663621|ref|YP_302402.1| cold shock protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72496136|dbj|BAE19457.1| cold shock protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
          Length = 66

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E     G+DVF+H SA+A  G  +L EGQ V ++ V+ D 
Sbjct: 1  MNNGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIAQEGYKSLEEGQAVEFEIVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|91977426|ref|YP_570085.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          BisB5]
 gi|91683882|gb|ABE40184.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB5]
          Length = 67

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P   T    DVF+H SAV  AGL  L E Q + Y+ V  D 
Sbjct: 1  MQKGTVKWFNPTKGYGFIRP---TSGDKDVFVHISAVERAGLSTLNENQTIEYELV--DN 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66


>gi|297200544|ref|ZP_06917941.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|197709669|gb|EDY53703.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
          Length = 68

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ ++L
Sbjct: 57 G--PQADMVRL 65


>gi|226507970|ref|NP_001140374.1| hypothetical protein LOC100272427 [Zea mays]
 gi|194699220|gb|ACF83694.1| unknown [Zea mays]
          Length = 395

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            RG++KW+N  KG+GFI+PE   +  +D+F+H+S++ S G  +L EG+ V +   + D 
Sbjct: 6  RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61

Query: 62 NGKYSAENLK 71
          +G+  A ++ 
Sbjct: 62 DGRTKAVDVT 71


>gi|16974801|pdb|1HZ9|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
 gi|16974802|pdb|1HZ9|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
          Length = 66

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KGYGFI  E     G DVF+H +A+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQAVSFEIVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|311742699|ref|ZP_07716508.1| CspA family cold shock transcriptional regulator [Aeromicrobium
          marinum DSM 15272]
 gi|311314327|gb|EFQ84235.1| CspA family cold shock transcriptional regulator [Aeromicrobium
          marinum DSM 15272]
          Length = 67

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFI P+   +  +DVF H +A+ S+G  +L E Q V +D  Q   
Sbjct: 1  MATGTVKWFNADKGFGFIAPD---DGSEDVFAHFTAIQSSGYRSLNENQKVEFDVEQGQK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--LQAANIRPL 67


>gi|290959448|ref|YP_003490630.1| cold shock protein [Streptomyces scabiei 87.22]
 gi|260648974|emb|CBG72088.1| cold shock protein [Streptomyces scabiei 87.22]
          Length = 68

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ ++L
Sbjct: 57 G--PQADMVRL 65


>gi|227550530|ref|ZP_03980579.1| cold shock protein [Enterococcus faecium TX1330]
 gi|257880205|ref|ZP_05659858.1| cold-shock protein [Enterococcus faecium 1,230,933]
 gi|257883006|ref|ZP_05662659.1| cold-shock protein [Enterococcus faecium 1,231,502]
 gi|257885248|ref|ZP_05664901.1| cold-shock protein [Enterococcus faecium 1,231,501]
 gi|257888557|ref|ZP_05668210.1| cold-shock protein [Enterococcus faecium 1,141,733]
 gi|257891411|ref|ZP_05671064.1| cold-shock protein [Enterococcus faecium 1,231,410]
 gi|257893592|ref|ZP_05673245.1| cold-shock protein [Enterococcus faecium 1,231,408]
 gi|257897068|ref|ZP_05676721.1| cold-shock protein [Enterococcus faecium Com12]
 gi|257899006|ref|ZP_05678659.1| cold-shock protein [Enterococcus faecium Com15]
 gi|258614393|ref|ZP_05712163.1| cold shock protein [Enterococcus faecium DO]
 gi|260560497|ref|ZP_05832671.1| cold-shock protein [Enterococcus faecium C68]
 gi|261209014|ref|ZP_05923419.1| cold-shock protein [Enterococcus faecium TC 6]
 gi|289565174|ref|ZP_06445626.1| cold shock-like protein cspD [Enterococcus faecium D344SRF]
 gi|293378756|ref|ZP_06624914.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
 gi|293553256|ref|ZP_06673893.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293563316|ref|ZP_06677766.1| cold-shock protein [Enterococcus faecium E1162]
 gi|293569311|ref|ZP_06680609.1| cold-shock protein [Enterococcus faecium E1071]
 gi|293572477|ref|ZP_06683456.1| cold-shock protein [Enterococcus faecium E980]
 gi|294615298|ref|ZP_06695174.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294619063|ref|ZP_06698558.1| cold shock protein [Enterococcus faecium E1679]
 gi|294621461|ref|ZP_06700630.1| cold-shock protein [Enterococcus faecium U0317]
 gi|314939797|ref|ZP_07847017.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|314943906|ref|ZP_07850632.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|314950003|ref|ZP_07853296.1| major cold shock protein CspA [Enterococcus faecium TX0082]
 gi|314953525|ref|ZP_07856437.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|314994272|ref|ZP_07859574.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|314995140|ref|ZP_07860256.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|227180431|gb|EEI61403.1| cold shock protein [Enterococcus faecium TX1330]
 gi|257814433|gb|EEV43191.1| cold-shock protein [Enterococcus faecium 1,230,933]
 gi|257818664|gb|EEV45992.1| cold-shock protein [Enterococcus faecium 1,231,502]
 gi|257821100|gb|EEV48234.1| cold-shock protein [Enterococcus faecium 1,231,501]
 gi|257824611|gb|EEV51543.1| cold-shock protein [Enterococcus faecium 1,141,733]
 gi|257827771|gb|EEV54397.1| cold-shock protein [Enterococcus faecium 1,231,410]
 gi|257829971|gb|EEV56578.1| cold-shock protein [Enterococcus faecium 1,231,408]
 gi|257833633|gb|EEV60054.1| cold-shock protein [Enterococcus faecium Com12]
 gi|257836918|gb|EEV61992.1| cold-shock protein [Enterococcus faecium Com15]
 gi|260073499|gb|EEW61827.1| cold-shock protein [Enterococcus faecium C68]
 gi|260077053|gb|EEW64775.1| cold-shock protein [Enterococcus faecium TC 6]
 gi|289162995|gb|EFD10843.1| cold shock-like protein cspD [Enterococcus faecium D344SRF]
 gi|291588017|gb|EFF19867.1| cold-shock protein [Enterococcus faecium E1071]
 gi|291591856|gb|EFF23489.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291594724|gb|EFF26106.1| cold shock protein [Enterococcus faecium E1679]
 gi|291598955|gb|EFF30003.1| cold-shock protein [Enterococcus faecium U0317]
 gi|291602666|gb|EFF32881.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291604768|gb|EFF34252.1| cold-shock protein [Enterococcus faecium E1162]
 gi|291607394|gb|EFF36737.1| cold-shock protein [Enterococcus faecium E980]
 gi|292642684|gb|EFF60836.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
 gi|313590631|gb|EFR69476.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|313591307|gb|EFR70152.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|313594448|gb|EFR73293.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|313597447|gb|EFR76292.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|313640937|gb|EFS05517.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|313643650|gb|EFS08230.1| major cold shock protein CspA [Enterococcus faecium TX0082]
          Length = 66

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFIT +     GDDVF+H SA+   G  +L EGQ V +  V+  A
Sbjct: 1  MEHGTVKWFNNEKGFGFITVD----GGDDVFVHFSAIQGDGFKSLEEGQEVEFTIVEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +AE  KL
Sbjct: 56 RGPQAAEVTKL 66


>gi|297582825|ref|YP_003698605.1| cold-shock DNA-binding domain-containing protein [Bacillus
          selenitireducens MLS10]
 gi|297141282|gb|ADH98039.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens
          MLS10]
          Length = 66

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     GDDVF+H SA+ + G   L EGQ V ++ V+ + 
Sbjct: 1  MMTGKVKWFNAEKGFGFIERE----DGDDVFVHFSAIQAEGFKTLDEGQDVEFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|293375824|ref|ZP_06622094.1| major cold shock protein CspA [Turicibacter sanguinis PC909]
 gi|325838578|ref|ZP_08166579.1| cold shock protein CspB [Turicibacter sp. HGF1]
 gi|292645601|gb|EFF63641.1| major cold shock protein CspA [Turicibacter sanguinis PC909]
 gi|325490804|gb|EGC93107.1| cold shock protein CspB [Turicibacter sp. HGF1]
          Length = 66

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFIT +     G+DVF H SA+   G   L EGQ V+++ V+ + 
Sbjct: 1  MTTGTVKWFNAEKGFGFITVD----GGNDVFAHFSAITGEGFKTLEEGQKVSFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANIVKL 66


>gi|260428302|ref|ZP_05782281.1| conserved domain protein [Citreicella sp. SE45]
 gi|260422794|gb|EEX16045.1| conserved domain protein [Citreicella sp. SE45]
          Length = 68

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PEG      DVF+H SAV  +GL  L + Q V+Y+  Q+  
Sbjct: 1  MATGTVKWFNTTKGYGFIAPEG---GSKDVFVHISAVERSGLTELKDNQKVSYEL-QSGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA NL+L+
Sbjct: 57 DGRESAINLELL 68


>gi|260598298|ref|YP_003210869.1| Cold shock-like protein cspC [Cronobacter turicensis z3032]
 gi|260217475|emb|CBA31616.1| Cold shock-like protein cspC [Cronobacter turicensis z3032]
          Length = 106

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 42  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 97

Query: 64  KYSAENLKL 72
             +   + +
Sbjct: 98  PAAVNVVAI 106


>gi|309812766|ref|ZP_07706505.1| cold shock-like protein CspE [Dermacoccus sp. Ellin185]
 gi|308433283|gb|EFP57176.1| cold shock-like protein CspE [Dermacoccus sp. Ellin185]
          Length = 67

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L EGQ V ++  Q D 
Sbjct: 1  MAQGTVKWFNAEKGFGFIEQDG---GGADVFVHFSAIQTNGYRSLDEGQRVEFEITQGDK 57

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 58 G--PQASNVT 65


>gi|326330338|ref|ZP_08196648.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325951875|gb|EGD43905.1| conserved domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 67

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI  +     GDDVF+H SA+ + G   L E Q V +D  Q   
Sbjct: 1  MTQGTVKWFNGDKGFGFIAQD---NGGDDVFVHFSAIQTQGYKTLDENQRVEFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ V
Sbjct: 58 G--PQAENVRPV 67


>gi|254512165|ref|ZP_05124232.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
          bacterium KLH11]
 gi|221535876|gb|EEE38864.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
          bacterium KLH11]
          Length = 68

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   E G DVF+H SAV  +GL  L + Q V+Y+  Q+  
Sbjct: 1  MPTGTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVSYEL-QDGR 56

Query: 62 NGKYSAENLKLV 73
          +G+  A +LK +
Sbjct: 57 DGRQMAADLKPL 68


>gi|303233128|ref|ZP_07319801.1| cold shock protein CspA [Atopobium vaginae PB189-T1-4]
 gi|302480713|gb|EFL43800.1| cold shock protein CspA [Atopobium vaginae PB189-T1-4]
          Length = 67

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NPDKGYGFI+ E     GDD+F+H S +   G   L EGQ V +D      
Sbjct: 1  MAQGTVKWFNPDKGYGFISRE----DGDDLFVHFSEIQMDGFKTLEEGQAVEFDVT-TGQ 55

Query: 62 NGKYSAENLK 71
          NGK  A N++
Sbjct: 56 NGKLQASNVR 65


>gi|238757593|ref|ZP_04618777.1| Cold shock-like protein cspD [Yersinia aldovae ATCC 35236]
 gi|238704098|gb|EEP96631.1| Cold shock-like protein cspD [Yersinia aldovae ATCC 35236]
          Length = 85

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQG-P 56

Query: 62 NGKYSAENLKLV 73
           G +++  + LV
Sbjct: 57 KGNHASLIVPLV 68


>gi|115524372|ref|YP_781283.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisA53]
 gi|115518319|gb|ABJ06303.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisA53]
          Length = 69

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P   ++ G DVF+H SAV  AGL  L EGQ V+Y  V +  
Sbjct: 1  MATGTVKWFNGQKGFGFIEP---SDGGKDVFVHISAVERAGLTGLAEGQKVSYQVVADKK 57

Query: 62 NGKYSAENLKLV 73
           GK SAE+L LV
Sbjct: 58 RGKESAESLALV 69


>gi|294636209|ref|ZP_06714624.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
 gi|291090490|gb|EFE23051.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
          Length = 97

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFITP    +   DVF+H SA+ S G   L EGQ V +   Q+   
Sbjct: 32 KTGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSDGFKTLAEGQQVEFSI-QDSPR 87

Query: 63 GKYSAENLKL 72
          G  +A+ + L
Sbjct: 88 GPAAADVVAL 97


>gi|13472286|ref|NP_103853.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|260464020|ref|ZP_05812215.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|319781978|ref|YP_004141454.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|14023031|dbj|BAB49639.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
 gi|259030191|gb|EEW31472.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|317167866|gb|ADV11404.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 70

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G DVF+H SAV  AGL  L EGQ + ++  Q+  
Sbjct: 1  MATGTVKWFNATKGFGFIQPDA---GGADVFVHISAVERAGLSTLVEGQKINFEIEQDRR 57

Query: 62 NGKYSAENLK 71
           GK SA +L 
Sbjct: 58 TGKSSAGSLS 67


>gi|260584219|ref|ZP_05851967.1| conserved hypothetical protein [Granulicatella elegans ATCC
          700633]
 gi|260158845|gb|EEW93913.1| conserved hypothetical protein [Granulicatella elegans ATCC
          700633]
          Length = 66

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  E     G DVF+H SA+ S G  +L EGQ V ++ V+  A
Sbjct: 1  MEQGKVKWFNAEKGFGFIERE----DGSDVFVHFSAIQSEGYKSLDEGQAVEFE-VEEGA 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|300769133|ref|ZP_07079022.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|300493373|gb|EFK28552.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
          Length = 88

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N DKG+GFIT     E G DVF+H SA+ + G   L EGQ VTYD  Q D
Sbjct: 22 IMKNGTVKWFNADKGFGFIT----GEDGTDVFVHFSAIQTDGFKTLDEGQKVTYDEEQGD 77

Query: 61 ANGKYSAENLK 71
                A N++
Sbjct: 78 RG--PQATNVQ 86


>gi|295838116|ref|ZP_06825049.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|302520033|ref|ZP_07272375.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
 gi|318062306|ref|ZP_07981027.1| cold shock protein [Streptomyces sp. SA3_actG]
 gi|318081844|ref|ZP_07989153.1| cold shock protein [Streptomyces sp. SA3_actF]
 gi|197700035|gb|EDY46968.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|302428928|gb|EFL00744.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
          Length = 67

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGK 64
            +
Sbjct: 57 GPQ 59


>gi|293401962|ref|ZP_06646102.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291304620|gb|EFE45869.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 66

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFIT    ++ G DVF+H S++ S G   L EGQ V++D V +D 
Sbjct: 1  MSTGKVKWFNAEKGYGFIT----SDEGKDVFVHYSSIQSDGFRTLEEGQRVSFDVVDSD- 55

Query: 62 NGKYSAENL 70
           G+ +A  +
Sbjct: 56 RGQQAANVV 64


>gi|75677234|ref|YP_319655.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
 gi|74422104|gb|ABA06303.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
          Nb-255]
          Length = 66

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P G    G DVF+H SAV  AGL  L EGQ V ++ V N  
Sbjct: 1  MAKGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVERAGLSTLNEGQTVEFEEVAN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66


>gi|197104417|ref|YP_002129794.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
           HLK1]
 gi|196477837|gb|ACG77365.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
           HLK1]
          Length = 250

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 3/68 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +KW+NP KG+GFI PEG    G D+F+H SAV  AGL  L EGQ V +D  Q+  +GK
Sbjct: 184 GVVKWFNPTKGFGFIKPEG---GGQDIFVHISAVEQAGLSGLNEGQTVDFDLEQDRRSGK 240

Query: 65  YSAENLKL 72
            SA NLK+
Sbjct: 241 TSATNLKI 248



 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++KW+N  KG+GFI P+   + G DVF+H SAVA AGL  L EG  V Y+  Q+  
Sbjct: 56  MASGTVKWFNTAKGFGFIQPD---DGGQDVFVHISAVAQAGLDALNEGDQVEYELEQDRR 112

Query: 62  NGKYSAENLKLVPKSS 77
           +GK +A ++ +  + +
Sbjct: 113 SGKLAATSIVVTAQGA 128


>gi|121711172|ref|XP_001273202.1| cold shock NA binding domain protein [Aspergillus clavatus NRRL 1]
 gi|119401352|gb|EAW11776.1| cold shock NA binding domain protein [Aspergillus clavatus NRRL 1]
          Length = 125

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++KW+N +KGYGFITPE     G+D+F+H  AV   G  +L EGQ VT++ VQ   
Sbjct: 59  RQNGTVKWFNDEKGYGFITPET----GEDLFVHFRAVEGNGFKSLKEGQKVTFEAVQGQK 114

Query: 62  NGKYSAENLKLVP 74
                A+ ++++ 
Sbjct: 115 G--RQADKVQVIE 125


>gi|297193625|ref|ZP_06911023.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721828|gb|EDY65736.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ +KL
Sbjct: 57 G--PQADMVKL 65


>gi|118589767|ref|ZP_01547172.1| ATP/GTP-binding site motif A (P-loop) protein [Stappia aggregata
          IAM 12614]
 gi|118437853|gb|EAV44489.1| ATP/GTP-binding site motif A (P-loop) protein [Stappia aggregata
          IAM 12614]
          Length = 69

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI PE   +   DVF+H SAV  AG+ +L EGQ V+++ VQ+  
Sbjct: 1  MPVGTVKFFNTTKGFGFIQPE---DGASDVFVHISAVERAGMRSLVEGQKVSFEVVQDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK +A+NL+ V
Sbjct: 58 SGKSAADNLQEV 69


>gi|239930514|ref|ZP_04687467.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291438875|ref|ZP_06578265.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341770|gb|EFE68726.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ +++
Sbjct: 57 G--PQADMVRV 65


>gi|294668449|ref|ZP_06733549.1| hypothetical protein NEIELOOT_00364 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291309602|gb|EFE50845.1| hypothetical protein NEIELOOT_00364 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E GDD+F H SA+   G   L EGQ V++D   +  
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---EGGDDLFAHFSAINMEGFKTLKEGQKVSFDVT-SGP 56

Query: 62 NGKYSAE 68
           G  +A 
Sbjct: 57 KGLQAAN 63


>gi|239981380|ref|ZP_04703904.1| cold shock protein [Streptomyces albus J1074]
 gi|291453236|ref|ZP_06592626.1| cold shock protein [Streptomyces albus J1074]
 gi|302552310|ref|ZP_07304652.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
 gi|291356185|gb|EFE83087.1| cold shock protein [Streptomyces albus J1074]
 gi|302469928|gb|EFL33021.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ +++
Sbjct: 57 G--PQADMVRV 65


>gi|84685583|ref|ZP_01013480.1| cold shock family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84666249|gb|EAQ12722.1| cold shock family protein [Rhodobacterales bacterium HTCC2654]
          Length = 68

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P   +E G DVF+H SAV  +GL  L + Q V+Y+  Q   
Sbjct: 1  MATGTVKWFNATKGFGFIEP---SEGGKDVFVHISAVERSGLTGLADNQKVSYEL-QAGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA NL+L+
Sbjct: 57 DGRESAANLELL 68


>gi|329849353|ref|ZP_08264199.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
 gi|328841264|gb|EGF90834.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP KG+GFI P   TE G DVF+H SAV  AGL +L EGQ + Y   Q+  
Sbjct: 1  MATGTVKWFNPTKGFGFIEP---TEGGGDVFVHISAVERAGLRSLNEGQKIEYQVAQD-- 55

Query: 62 NGKYSAENLKLV 73
           GK SA +LK +
Sbjct: 56 RGKASAVDLKTL 67


>gi|315642390|ref|ZP_07896985.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
 gi|315482298|gb|EFU72851.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
          Length = 96

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KG+GFIT     E+G DVF H SA+ + G  +L EGQ VT+D  +   
Sbjct: 31 MNKGTVKWFNAEKGFGFIT----GENGQDVFAHFSAIQADGFKSLDEGQAVTFDTEEGQR 86

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 87 G--MQAVNI 93


>gi|56419891|ref|YP_147209.1| cold shock protein [Geobacillus kaustophilus HTA426]
 gi|138894876|ref|YP_001125329.1| major cold shock protein CspB [Geobacillus thermodenitrificans
          NG80-2]
 gi|196248552|ref|ZP_03147253.1| cold-shock DNA-binding domain protein [Geobacillus sp. G11MC16]
 gi|261419562|ref|YP_003253244.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC61]
 gi|295402279|ref|ZP_06812235.1| cold-shock DNA-binding domain protein [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|297530466|ref|YP_003671741.1| cold-shock DNA-binding domain protein [Geobacillus sp. C56-T3]
 gi|312111498|ref|YP_003989814.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y4.1MC1]
 gi|319766378|ref|YP_004131879.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC52]
 gi|729217|sp|P41016|CSPB_BACCL RecName: Full=Cold shock protein CspB
 gi|7546262|pdb|1C9O|A Chain A, Crystal Structure Analysis Of The Bacillus Caldolyticus
          Cold Shock Protein Bc-Csp
 gi|7546263|pdb|1C9O|B Chain B, Crystal Structure Analysis Of The Bacillus Caldolyticus
          Cold Shock Protein Bc-Csp
 gi|146386838|pdb|2HAX|A Chain A, Crystal Structure Of Bacillus Caldolyticus Cold Shock
          Protein In Complex With Hexathymidine
 gi|146386839|pdb|2HAX|B Chain B, Crystal Structure Of Bacillus Caldolyticus Cold Shock
          Protein In Complex With Hexathymidine
 gi|1333711|emb|CAA51790.1| major cold shock protein (CspB) [Bacillus caldolyticus]
 gi|56379733|dbj|BAD75641.1| cold shock protein [Geobacillus kaustophilus HTA426]
 gi|134266389|gb|ABO66584.1| Major cold shock protein CspB [Geobacillus thermodenitrificans
          NG80-2]
 gi|196212277|gb|EDY07035.1| cold-shock DNA-binding domain protein [Geobacillus sp. G11MC16]
 gi|261376019|gb|ACX78762.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC61]
 gi|294975672|gb|EFG51294.1| cold-shock DNA-binding domain protein [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|297253718|gb|ADI27164.1| cold-shock DNA-binding domain protein [Geobacillus sp. C56-T3]
 gi|311216599|gb|ADP75203.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y4.1MC1]
 gi|317111244|gb|ADU93736.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC52]
 gi|740004|prf||2004289A cold shock protein
          Length = 66

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KGYGFI  E     G DVF+H +A+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|301056652|ref|YP_003794863.1| cold shock protein [Bacillus anthracis CI]
 gi|300378821|gb|ADK07725.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ V +D V + 
Sbjct: 1  MNMQGRVKWFNAEKGFGFIERE----DGEDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55

Query: 61 ANGKYSAENLKL 72
          A G  +A  +KL
Sbjct: 56 ARGPQAANVVKL 67


>gi|331641125|ref|ZP_08342260.1| cold shock protein [Escherichia coli H736]
 gi|331645781|ref|ZP_08346884.1| cold shock protein [Escherichia coli M605]
 gi|331651632|ref|ZP_08352651.1| cold shock protein [Escherichia coli M718]
 gi|331672164|ref|ZP_08372956.1| cold shock protein [Escherichia coli TA280]
 gi|331676282|ref|ZP_08376994.1| cold shock protein [Escherichia coli H591]
 gi|1778540|gb|AAB40823.1| cold shock-like protein [Escherichia coli]
 gi|331037923|gb|EGI10143.1| cold shock protein [Escherichia coli H736]
 gi|331044533|gb|EGI16660.1| cold shock protein [Escherichia coli M605]
 gi|331049910|gb|EGI21968.1| cold shock protein [Escherichia coli M718]
 gi|331070631|gb|EGI41994.1| cold shock protein [Escherichia coli TA280]
 gi|331076340|gb|EGI47622.1| cold shock protein [Escherichia coli H591]
 gi|332097718|gb|EGJ02692.1| cold shock-like protein cspI [Shigella boydii 3594-74]
          Length = 79

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++   N A G
Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 70

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 71 PSAANVIAL 79


>gi|332286174|ref|YP_004418085.1| putative cold shock-like protein [Pusillimonas sp. T7-7]
 gi|330430127|gb|AEC21461.1| putative cold shock-like protein [Pusillimonas sp. T7-7]
          Length = 68

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N DKG+GFITP+     G DVF H SA+   G  +L EGQ V ++ V++ 
Sbjct: 1  MAQKGKVKWFNADKGFGFITPDA---GGTDVFAHFSAIEGRGYRSLNEGQEVEFE-VKDG 56

Query: 61 ANGKYSAE 68
            G  +AE
Sbjct: 57 PKGPQAAE 64


>gi|92117648|ref|YP_577377.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91800542|gb|ABE62917.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P        DVF+H SAV  AGL  L E Q++ YD V+N  
Sbjct: 1  MQKGTVKWFNPTKGYGFIKP---MNDDRDVFVHISAVERAGLSTLNENQVIEYDLVEN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66


>gi|254386794|ref|ZP_05002084.1| cold shock protein [Streptomyces sp. Mg1]
 gi|194345629|gb|EDX26595.1| cold shock protein [Streptomyces sp. Mg1]
          Length = 68

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ +KL
Sbjct: 57 G--PQADMVKL 65


>gi|222086901|ref|YP_002545435.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221724349|gb|ACM27505.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 69

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ +L +GQ ++Y+ V++  
Sbjct: 1  MSTGTVKWFNAAKGFGFIQPD---DGATDVFVHISAVERAGMSSLRDGQKISYELVKDKR 57

Query: 62 NGKYSAENLK 71
          +GK SA+ L+
Sbjct: 58 SGKMSADQLE 67


>gi|332671932|ref|YP_004454940.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332340970|gb|AEE47553.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
          484]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+   + G DVF H SA+AS+G  +L E Q V +D  Q   
Sbjct: 1  MAIGTVKWFNAEKGFGFIAPD---DGGPDVFAHYSAIASSGYRSLEENQKVQFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 58 G--PQASNIT 65


>gi|289450032|ref|YP_003475336.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          genomosp. BVAB3 str. UPII9-5]
 gi|289184579|gb|ADC91004.1| cold-shock DNA-binding domain protein [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
          Length = 70

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KGYGFI  +     GDD+F+H SA+   G   L EGQ VT+D   +  
Sbjct: 1  MNTGTVKWFNDTKGYGFIAND---NGGDDLFVHFSAIRIDGFKTLKEGQKVTFDTEADPK 57

Query: 62 NG-KYSAENL 70
          +  K  A N+
Sbjct: 58 DPNKMRAVNV 67


>gi|29831363|ref|NP_825997.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29608478|dbj|BAC72532.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF+H SA+ ++G  +L E Q V++D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQSVSFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 58 G--PQAENVTPL 67


>gi|33593717|ref|NP_881361.1| putative cold-shock protein [Bordetella pertussis Tohama I]
 gi|33597156|ref|NP_884799.1| putative cold-shock protein [Bordetella parapertussis 12822]
 gi|33601000|ref|NP_888560.1| putative cold-shock protein [Bordetella bronchiseptica RB50]
 gi|33563790|emb|CAE43032.1| putative cold-shock protein [Bordetella pertussis Tohama I]
 gi|33566607|emb|CAE37865.1| putative cold-shock protein [Bordetella parapertussis]
 gi|33575435|emb|CAE32513.1| putative cold-shock protein [Bordetella bronchiseptica RB50]
 gi|332383120|gb|AEE67967.1| putative cold-shock protein [Bordetella pertussis CS]
          Length = 81

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITP+   + G+D+F H S++   G   L EGQ V+++ +Q    G
Sbjct: 17 TGTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQG-PKG 72

Query: 64 KYS 66
          K +
Sbjct: 73 KQA 75


>gi|27375170|ref|NP_766699.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27348306|dbj|BAC45324.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 77

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+NP KGYGFI P+   + G+DVF+H SAV  AG  +L EG  V+Y+ V N  +GK
Sbjct: 13 GTVKWFNPTKGYGFIAPD---DGGNDVFVHISAVEKAGYTSLVEGAKVSYELVMN-RSGK 68

Query: 65 YSAENLKL 72
           +AENL+L
Sbjct: 69 QAAENLRL 76


>gi|307328611|ref|ZP_07607784.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306885723|gb|EFN16736.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L E Q VT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINATGFRSLEENQAVTFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN+  V
Sbjct: 58 G--PQAENVSPV 67


>gi|330466858|ref|YP_004404601.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
 gi|328809829|gb|AEB44001.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFIT +G    G DVF+H SA+ S+G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQSSGYRTLEENQRVEFEIAQGQK 57

Query: 62 NGKYSAENLKLV 73
               AE ++ +
Sbjct: 58 G--PQAEQVRPL 67


>gi|302543455|ref|ZP_07295797.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302461073|gb|EFL24166.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q VT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQAVTFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN+  V
Sbjct: 58 G--PQAENVSAV 67


>gi|152967580|ref|YP_001363364.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
          SRS30216]
 gi|151362097|gb|ABS05100.1| putative cold-shock DNA-binding domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFIT +   + G DVF+H SA+ + G  +L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNSEKGYGFITVD---DGGADVFVHYSAITADGYRSLEEGQRVEFEVGQGQK 57

Query: 62 NGKYSAENLKLV 73
               AE+++ +
Sbjct: 58 G--PQAESVRAL 67


>gi|119962819|ref|YP_946960.1| cold shock protein [Arthrobacter aurescens TC1]
 gi|119949678|gb|ABM08589.1| putative cold shock protein [Arthrobacter aurescens TC1]
          Length = 67

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI+PE   +   DVF H SA+ S+G  +L E Q V++D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFISPE---DGSQDVFAHYSAINSSGYRSLEENQKVSFDVEQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--PQAVNIQAI 67


>gi|42391858|dbj|BAD08701.1| cold shock domain protein 3 [Triticum aestivum]
          Length = 231

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI+P+   + G+D+F+H+SA+ S G  +L E   V ++ +  D +G
Sbjct: 6  KGTVKWFNVTKGFGFISPD---DGGEDLFVHQSAIKSDGYRSLNENDAVEFEIITGD-DG 61

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 62 RTKASDVT 69


>gi|187478585|ref|YP_786609.1| cold shock-like protein [Bordetella avium 197N]
 gi|115423171|emb|CAJ49702.1| cold shock-like protein [Bordetella avium 197N]
          Length = 81

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITP+   + G+D+F H S++   G   L EGQ V+++ +Q    G
Sbjct: 17 TGTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQG-PKG 72

Query: 64 KYS 66
          K +
Sbjct: 73 KQA 75


>gi|254474468|ref|ZP_05087854.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp.
          R11]
 gi|214028711|gb|EEB69546.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp.
          R11]
          Length = 68

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+     G DVF+H SAV  +GL  L + Q V Y+  Q   
Sbjct: 1  MATGTVKWFNTTKGYGFIAPDS---GGSDVFVHISAVERSGLTGLADNQKVNYEL-QPGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA NL+LV
Sbjct: 57 DGRESAVNLELV 68


>gi|294630012|ref|ZP_06708572.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292833345|gb|EFF91694.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G  +L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRSLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ +++
Sbjct: 57 G--PQADMVRV 65


>gi|227550363|ref|ZP_03980412.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecium TX1330]
 gi|257879582|ref|ZP_05659235.1| cold-shock domain-contain protein [Enterococcus faecium
          1,230,933]
 gi|257882601|ref|ZP_05662254.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,502]
 gi|257885024|ref|ZP_05664677.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,501]
 gi|257888396|ref|ZP_05668049.1| cold-shock domain-contain protein [Enterococcus faecium
          1,141,733]
 gi|257890250|ref|ZP_05669903.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,410]
 gi|257893434|ref|ZP_05673087.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,408]
 gi|257897230|ref|ZP_05676883.1| cold-shock domain-contain protein [Enterococcus faecium Com12]
 gi|257899231|ref|ZP_05678884.1| cold-shock domain-contain protein [Enterococcus faecium Com15]
 gi|258616807|ref|ZP_05714577.1| cold-shock domain-contain protein [Enterococcus faecium DO]
 gi|260559753|ref|ZP_05831933.1| cold-shock domain-containing protein [Enterococcus faecium C68]
 gi|261207314|ref|ZP_05922001.1| cold-shock domain-containing protein [Enterococcus faecium TC 6]
 gi|289566513|ref|ZP_06446936.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
 gi|293378002|ref|ZP_06624180.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
 gi|293557236|ref|ZP_06675784.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293559750|ref|ZP_06676271.1| cold shock protein [Enterococcus faecium E1162]
 gi|293567614|ref|ZP_06678958.1| cold-shock protein [Enterococcus faecium E1071]
 gi|293570377|ref|ZP_06681434.1| cold-shock protein [Enterococcus faecium E980]
 gi|294616534|ref|ZP_06696312.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294618375|ref|ZP_06697953.1| cold shock protein [Enterococcus faecium E1679]
 gi|294623246|ref|ZP_06702117.1| cold shock protein [Enterococcus faecium U0317]
 gi|314938910|ref|ZP_07846177.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|314943096|ref|ZP_07849897.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|314948107|ref|ZP_07851508.1| major cold shock protein CspA [Enterococcus faecium TX0082]
 gi|314951627|ref|ZP_07854672.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|314993868|ref|ZP_07859202.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|314996709|ref|ZP_07861732.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|227180502|gb|EEI61474.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecium TX1330]
 gi|257813810|gb|EEV42568.1| cold-shock domain-contain protein [Enterococcus faecium
          1,230,933]
 gi|257818259|gb|EEV45587.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,502]
 gi|257820876|gb|EEV48010.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,501]
 gi|257824450|gb|EEV51382.1| cold-shock domain-contain protein [Enterococcus faecium
          1,141,733]
 gi|257826610|gb|EEV53236.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,410]
 gi|257829813|gb|EEV56420.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,408]
 gi|257833795|gb|EEV60216.1| cold-shock domain-contain protein [Enterococcus faecium Com12]
 gi|257837143|gb|EEV62217.1| cold-shock domain-contain protein [Enterococcus faecium Com15]
 gi|260074421|gb|EEW62743.1| cold-shock domain-containing protein [Enterococcus faecium C68]
 gi|260078374|gb|EEW66078.1| cold-shock domain-containing protein [Enterococcus faecium TC 6]
 gi|289161667|gb|EFD09544.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
 gi|291589715|gb|EFF21519.1| cold-shock protein [Enterococcus faecium E1071]
 gi|291590581|gb|EFF22312.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291595352|gb|EFF26667.1| cold shock protein [Enterococcus faecium E1679]
 gi|291597353|gb|EFF28533.1| cold shock protein [Enterococcus faecium U0317]
 gi|291600600|gb|EFF30904.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291606298|gb|EFF35711.1| cold shock protein [Enterococcus faecium E1162]
 gi|291609555|gb|EFF38820.1| cold-shock protein [Enterococcus faecium E980]
 gi|292643367|gb|EFF61499.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
 gi|313589147|gb|EFR67992.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|313591678|gb|EFR70523.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|313596223|gb|EFR75068.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|313598198|gb|EFR77043.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|313641784|gb|EFS06364.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|313645443|gb|EFS10023.1| major cold shock protein CspA [Enterococcus faecium TX0082]
          Length = 66

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI+ E     G DVF+H SA+   G   L EGQ VT+D  ++D 
Sbjct: 1  MENGTVKWFNAEKGFGFISRE----DGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESD- 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGPQAANVVK 65


>gi|297201608|ref|ZP_06919005.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|197711021|gb|EDY55055.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|311897871|dbj|BAJ30279.1| putative cold shock protein [Kitasatospora setae KM-6054]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF+H SA+ ++G  +L E Q V++D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQAVSFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN+  V
Sbjct: 58 G--PQAENVTPV 67


>gi|328884096|emb|CCA57335.1| Cold shock protein CspA [Streptomyces venezuelae ATCC 10712]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G  +L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRSLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ +KL
Sbjct: 57 G--PQADMVKL 65


>gi|330469179|ref|YP_004406922.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
 gi|328812150|gb|AEB46322.1| cold-shock DNA-binding domain protein [Verrucosispora maris
          AB-18-032]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+AS+G   LTEGQ V +D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGPDVFVHYSAIASSGYRELTEGQKVEFDVTQGQK 57

Query: 62 NGKYSAENLK 71
               A+N++
Sbjct: 58 G--PQADNVR 65


>gi|316933345|ref|YP_004108327.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris DX-1]
 gi|315601059|gb|ADU43594.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          DX-1]
          Length = 69

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P   ++ G+DVF+H SAV  AGL  L EGQ V+++   +  
Sbjct: 1  MTTGTVKWFNGQKGFGFIAP---SDGGNDVFVHISAVERAGLSGLAEGQQVSFEVKVDKM 57

Query: 62 NGKYSAENLKL 72
           GK SAENL L
Sbjct: 58 RGKSSAENLAL 68


>gi|288556191|ref|YP_003428126.1| cold shock protein [Bacillus pseudofirmus OF4]
 gi|288547351|gb|ADC51234.1| cold shock protein [Bacillus pseudofirmus OF4]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ V ++ V+ D
Sbjct: 1  MTQTGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAITGEGFKSLDEGQAVEFEIVEGD 56

Query: 61 ANGKYSAENLK 71
            G  +A  +K
Sbjct: 57 -RGPQAANVVK 66


>gi|238020304|ref|ZP_04600730.1| hypothetical protein GCWU000324_00182 [Kingella oralis ATCC
          51147]
 gi|237867284|gb|EEP68290.1| hypothetical protein GCWU000324_00182 [Kingella oralis ATCC
          51147]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D      
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFDVT-TGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|226310536|ref|YP_002770430.1| cold shock protein [Brevibacillus brevis NBRC 100599]
 gi|226093484|dbj|BAH41926.1| cold shock protein [Brevibacillus brevis NBRC 100599]
          Length = 66

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI  E     G+DVF+H SA+   G   L EGQ V ++ V+ + 
Sbjct: 1  MQTGTVKWFNAEKGYGFIAVE----GGNDVFVHFSAIQGDGFKTLEEGQRVEFNVVEGNR 56

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 57 G--PQAENVTKL 66


>gi|298291124|ref|YP_003693063.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296927635|gb|ADH88444.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 71

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G++KW+N  KGYGFI P+G+   G DVF+H SAV  +GL  L +G+ V+++   +  +
Sbjct: 4  QTGTVKWFNDQKGYGFIQPDGA---GKDVFVHISAVQRSGLQGLRDGEKVSFELQTDQRS 60

Query: 63 GKYSAENLKL 72
          GK SA NL++
Sbjct: 61 GKTSAVNLRV 70


>gi|187926455|ref|YP_001892800.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
 gi|241665942|ref|YP_002984301.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
 gi|309778741|ref|ZP_07673514.1| cold shock transcription regulator protein [Ralstonia sp.
          5_7_47FAA]
 gi|187728209|gb|ACD29373.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
 gi|240867969|gb|ACS65629.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
 gi|308922449|gb|EFP68073.1| cold shock transcription regulator protein [Ralstonia sp.
          5_7_47FAA]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H SA+ SAG  +L EGQ V+++  Q   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSAINSAGFKSLKEGQKVSFEVTQG-P 56

Query: 62 NGKYSAENL 70
           GK ++  +
Sbjct: 57 KGKQASNIV 65


>gi|13475232|ref|NP_106796.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|14025983|dbj|BAB52582.1| cold shock protein [Mesorhizobium loti MAFF303099]
          Length = 70

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G DVF+H SAV  AGL  LT+GQ + Y+  Q+  
Sbjct: 1  MAIGTVKWFNSTKGFGFIQPD---NGGQDVFVHISAVERAGLSTLTDGQKINYEVEQDRR 57

Query: 62 NGKYSAENLK 71
           GK SA NL 
Sbjct: 58 TGKSSAGNLS 67


>gi|297626180|ref|YP_003687943.1| Cold shock-like protein CspA [Propionibacterium freudenreichii
          subsp. shermanii CIRM-BIA1]
 gi|296921945|emb|CBL56505.1| Cold shock-like protein CspA [Propionibacterium freudenreichii
          subsp. shermanii CIRM-BIA1]
          Length = 68

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI  +GS++   DVF+H SA+ S G  +L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGYGFIAVDGSSD---DVFVHYSAIDSTGFRSLDEGQKVEFDIAQGPK 57

Query: 62 NGKYSAENLKLV 73
               AE++KLV
Sbjct: 58 G--QQAEHVKLV 67


>gi|238060156|ref|ZP_04604865.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|237881967|gb|EEP70795.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+A++G   L EGQ V ++  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGPDVFVHYSAIATSGYRELNEGQKVEFEVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+N++ +
Sbjct: 58 G--PQADNVRPM 67


>gi|311107315|ref|YP_003980168.1| cold shock-like protein CspG [Achromobacter xylosoxidans A8]
 gi|310762004|gb|ADP17453.1| cold shock-like protein CspG [Achromobacter xylosoxidans A8]
          Length = 94

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITP+   + G+D+F H S++   G   L EGQ V ++ +Q    G
Sbjct: 30 TGTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQG-PKG 85

Query: 64 KYS 66
          K +
Sbjct: 86 KQA 88


>gi|238919337|ref|YP_002932852.1| hypothetical protein NT01EI_1429 [Edwardsiella ictaluri 93-146]
 gi|269138654|ref|YP_003295355.1| major cold shock protein [Edwardsiella tarda EIB202]
 gi|238868906|gb|ACR68617.1| conserved domain protein [Edwardsiella ictaluri 93-146]
 gi|267984315|gb|ACY84144.1| major cold shock protein [Edwardsiella tarda EIB202]
 gi|304558665|gb|ADM41329.1| Cold shock protein CspA [Edwardsiella tarda FL6-60]
          Length = 71

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+     G D+F+H SA+ S G  +L EGQ V ++     A G
Sbjct: 6  TGLVKWFNADKGFGFITPD---NGGSDIFVHFSAIQSNGYKSLDEGQKVAFEVQTGAAKG 62

Query: 64 KYSAENLKLV 73
            SA N+  +
Sbjct: 63 P-SAINVTPL 71


>gi|294498234|ref|YP_003561934.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295703585|ref|YP_003596660.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294348171|gb|ADE68500.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294801244|gb|ADF38310.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI  E     G DVF+H SA+ S G  +L EGQ V+++ V+ + 
Sbjct: 1  MQNGKVKWFNNEKGYGFIEVE----GGSDVFVHFSAIQSEGYKSLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAANVTKL 66


>gi|294102753|ref|YP_003554611.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
 gi|293617733|gb|ADE57887.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
          Length = 66

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFIT    ++ G DVF+H S++   G   L EGQ VT++     A
Sbjct: 1  MSQGTVKWFNATKGYGFIT----SDEGKDVFVHFSSIQGDGFKTLDEGQRVTFEVT-AGA 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 KGDQAANVVKL 66


>gi|308068467|ref|YP_003870072.1| Cold shock-like protein cspD [Paenibacillus polymyxa E681]
 gi|305857746|gb|ADM69534.1| Cold shock-like protein cspD [Paenibacillus polymyxa E681]
          Length = 65

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI      + G+DVF+H SA+   G   L EGQ V ++  + +  G
Sbjct: 2  KGTVKWFNAEKGYGFIQ----MDGGEDVFVHFSAIQGDGFKTLEEGQAVEFEITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|1169112|sp|P42016|CSPB_BACST RecName: Full=Cold shock protein CspB; AltName: Full=Major cold
          shock protein
 gi|1129127|emb|CAA51792.1| major cold shock protein (CspB) [Geobacillus stearothermophilus]
 gi|740006|prf||2004289C cold shock protein
          Length = 66

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KGYGFI  E     G DVF+H +A+   G  +L EGQ V+++ VQ + 
Sbjct: 1  MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKSLEEGQEVSFEIVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|311897785|dbj|BAJ30193.1| putative cold shock protein [Kitasatospora setae KM-6054]
          Length = 68

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGK 64
            +
Sbjct: 57 GPQ 59


>gi|297195982|ref|ZP_06913380.1| cold shock protein 1 [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718880|gb|EDY62788.1| cold shock protein 1 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q V +D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVEFDITQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ V
Sbjct: 58 G--PQAENVRPV 67


>gi|190890873|ref|YP_001977415.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|218463533|ref|ZP_03503624.1| cold shock protein [Rhizobium etli Kim 5]
 gi|218507653|ref|ZP_03505531.1| cold shock protein [Rhizobium etli Brasil 5]
 gi|218514329|ref|ZP_03511169.1| cold shock protein [Rhizobium etli 8C-3]
 gi|218663162|ref|ZP_03519092.1| cold shock protein [Rhizobium etli IE4771]
 gi|218671488|ref|ZP_03521158.1| cold shock protein [Rhizobium etli GR56]
 gi|190696152|gb|ACE90237.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|327190699|gb|EGE57781.1| cold shock protein [Rhizobium etli CNPAF512]
          Length = 69

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N  KG+GFI P+   +   DVF+H SAV  AG+  LTEGQ V YD V++  
Sbjct: 1  MNSGVVKWFNGTKGFGFIQPD---DGSTDVFVHISAVERAGMRELTEGQKVRYDLVRDKR 57

Query: 62 NGKYSAENLK 71
          +GK +A+NL+
Sbjct: 58 SGKNAADNLQ 67


>gi|77462572|ref|YP_352076.1| cold-shock DNA-binding protein family protein [Rhodobacter
          sphaeroides 2.4.1]
 gi|126461506|ref|YP_001042620.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|221638430|ref|YP_002524692.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          KD131]
 gi|332557457|ref|ZP_08411779.1| cold shock protein [Rhodobacter sphaeroides WS8N]
 gi|77386990|gb|ABA78175.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          2.4.1]
 gi|126103170|gb|ABN75848.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17029]
 gi|221159211|gb|ACM00191.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          KD131]
 gi|332275169|gb|EGJ20484.1| cold shock protein [Rhodobacter sphaeroides WS8N]
          Length = 68

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G      DVF+H SA+  AG+  L +GQ VT+D  + D 
Sbjct: 1  MANGTVKWFNATKGFGFIAPAG---GSKDVFVHISALERAGIRQLNDGQAVTFDL-ETDR 56

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 57 NGRESATNLAL 67


>gi|163859299|ref|YP_001633597.1| cold shock protein [Bordetella petrii DSM 12804]
 gi|163263027|emb|CAP45330.1| cold shock protein [Bordetella petrii]
          Length = 68

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          MV +G +KW+N DKG+GFITP+     G DVF H SA+   G  +L EGQ V ++ V++ 
Sbjct: 1  MVQKGKVKWFNADKGFGFITPDA---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56

Query: 61 ANGKYSAE 68
            G  +A+
Sbjct: 57 PKGPQAAD 64


>gi|17549274|ref|NP_522614.1| cold shock-like transcription regulator protein [Ralstonia
          solanacearum GMI1000]
 gi|83749154|ref|ZP_00946157.1| Cold shock protein [Ralstonia solanacearum UW551]
 gi|300694069|ref|YP_003750042.1| cold shock-like protein [Ralstonia solanacearum PSI07]
 gi|17431526|emb|CAD18204.1| probable cold shock activator transcription regulator protein
          [Ralstonia solanacearum GMI1000]
 gi|83724150|gb|EAP71325.1| Cold shock protein [Ralstonia solanacearum UW551]
 gi|299069468|emb|CBJ40735.1| Cold shock protein [Ralstonia solanacearum CMR15]
 gi|299076106|emb|CBJ35417.1| Cold shock-like protein [Ralstonia solanacearum PSI07]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++  Q   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|212712933|ref|ZP_03321061.1| hypothetical protein PROVALCAL_04031 [Providencia alcalifaciens
          DSM 30120]
 gi|212684411|gb|EEB43939.1| hypothetical protein PROVALCAL_04031 [Providencia alcalifaciens
          DSM 30120]
          Length = 81

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA++  G   L EGQ V ++  +  A G
Sbjct: 17 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAISGDGFKTLAEGQKVEFEITEG-AKG 72

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 73 PSAANVVSL 81


>gi|58581493|ref|YP_200509.1| cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426087|gb|AAW75124.1| cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 75

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+PE   +   DVF H SA+ S G  +L EGQ V+YD  Q   
Sbjct: 8  MPNGTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVSYDVTQGPK 64

Query: 62 NGKYSAENLKLVP 74
               A N+  V 
Sbjct: 65 G--AQASNITPVE 75


>gi|218767948|ref|YP_002342460.1| putative transcriptional regulator [Neisseria meningitidis Z2491]
 gi|241758498|ref|ZP_04756617.1| cold-shock DNA-binding domain protein [Neisseria flavescens
          SK114]
 gi|121051956|emb|CAM08264.1| putative transcriptional regulator [Neisseria meningitidis Z2491]
 gi|241321333|gb|EER57481.1| cold-shock DNA-binding domain protein [Neisseria flavescens
          SK114]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D      
Sbjct: 1  MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMDGFKTLKEGQRVSFDVT-TGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|89097123|ref|ZP_01170013.1| cold-shock protein [Bacillus sp. NRRL B-14911]
 gi|89087946|gb|EAR67057.1| cold-shock protein [Bacillus sp. NRRL B-14911]
          Length = 66

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     GDDVF+H SA+ S G  +L EGQ VT+D  Q  A
Sbjct: 1  MEQGTVKWFNAEKGFGFIERE----GGDDVFVHFSAIQSEGFKSLDEGQKVTFDVEQG-A 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|260575739|ref|ZP_05843736.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
 gi|259022137|gb|EEW25436.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
          Length = 68

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L + Q + ++  Q+  
Sbjct: 1  MPTGTVKWFNSTKGYGFIAPD---DGGKDVFVHISAVERAGLKGLNDNQKIGFEL-QSGR 56

Query: 62 NGKYSAENLKLV 73
          +GK SA +L+L+
Sbjct: 57 DGKQSAGDLRLL 68


>gi|323339641|ref|ZP_08079913.1| cold-shock domain family protein [Lactobacillus ruminis ATCC
          25644]
 gi|323092937|gb|EFZ35537.1| cold-shock domain family protein [Lactobacillus ruminis ATCC
          25644]
          Length = 66

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFIT E     G DVF+H SA+   G  +L EGQ VT+D V+   
Sbjct: 1  MEQGTVKWFNAEKGYGFITRE----DGSDVFVHFSAIQGEGYKSLEEGQHVTFD-VEEGQ 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGLQAANVVK 65


>gi|92118346|ref|YP_578075.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91801240|gb|ABE63615.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 73

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI P+     G DVF+H SAV  AGL +L EG  V+Y+ V N   G
Sbjct: 9  TGTVKWFNATKGFGFIQPDS---GGKDVFVHISAVERAGLSSLNEGAKVSYEVVAN--RG 63

Query: 64 KYSAENLKL 72
          K SAENL++
Sbjct: 64 KESAENLRV 72


>gi|182437019|ref|YP_001824738.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|239943163|ref|ZP_04695100.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|239989621|ref|ZP_04710285.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
 gi|282860556|ref|ZP_06269622.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|291446637|ref|ZP_06586027.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|326777634|ref|ZP_08236899.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178465535|dbj|BAG20055.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|282564292|gb|EFB69828.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|291349584|gb|EFE76488.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|320009370|gb|ADW04220.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
 gi|326657967|gb|EGE42813.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 68

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ +KL
Sbjct: 57 G--PQADMVKL 65


>gi|295697365|ref|YP_003590603.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
 gi|295412967|gb|ADG07459.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+NPDKGYGFI+ E     G+DVF+H SA+ S G   L+EGQLV +D VQ  A G
Sbjct: 2  QGRVKWFNPDKGYGFISRE----DGEDVFVHYSAIQSQGFRTLSEGQLVEFDIVQG-ARG 56

Query: 64 KYSAENL 70
            +A  +
Sbjct: 57 PQAANVV 63


>gi|309775820|ref|ZP_07670814.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916358|gb|EFP62104.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 66

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFIT    ++ G D+F+H S++ S G   L EGQ V +D V++D 
Sbjct: 1  MSTGKVKWFNAEKGYGFIT----SDDGKDIFVHYSSIQSDGFRTLEEGQAVNFDVVESDR 56

Query: 62 NGKYSAENLKL 72
               A N+ +
Sbjct: 57 G--QQAANVTV 65


>gi|228993896|ref|ZP_04153799.1| hypothetical protein bpmyx0001_46190 [Bacillus pseudomycoides DSM
          12442]
 gi|228999933|ref|ZP_04159505.1| hypothetical protein bmyco0003_44860 [Bacillus mycoides Rock3-17]
 gi|229007485|ref|ZP_04165082.1| hypothetical protein bmyco0002_43640 [Bacillus mycoides Rock1-4]
 gi|229087667|ref|ZP_04219793.1| hypothetical protein bcere0022_42280 [Bacillus cereus Rock3-44]
 gi|229164128|ref|ZP_04292064.1| hypothetical protein bcere0009_48900 [Bacillus cereus R309803]
 gi|228619364|gb|EEK76254.1| hypothetical protein bcere0009_48900 [Bacillus cereus R309803]
 gi|228695628|gb|EEL48487.1| hypothetical protein bcere0022_42280 [Bacillus cereus Rock3-44]
 gi|228753873|gb|EEM03314.1| hypothetical protein bmyco0002_43640 [Bacillus mycoides Rock1-4]
 gi|228759875|gb|EEM08849.1| hypothetical protein bmyco0003_44860 [Bacillus mycoides Rock3-17]
 gi|228765847|gb|EEM14498.1| hypothetical protein bpmyx0001_46190 [Bacillus pseudomycoides DSM
          12442]
          Length = 65

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ V +D V + A G
Sbjct: 2  QGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQKVEFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|71907020|ref|YP_284607.1| cold-shock DNA-binding protein family protein [Dechloromonas
          aromatica RCB]
 gi|71846641|gb|AAZ46137.1| cold-shock DNA-binding protein family [Dechloromonas aromatica
          RCB]
          Length = 67

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H SA+ S+G   LTEGQ V++D      
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---QGGEDLFAHFSAIQSSGFKTLTEGQKVSFDVTTGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 58 G--LQASNIQPV 67


>gi|86356809|ref|YP_468701.1| cold shock protein [Rhizobium etli CFN 42]
 gi|86280911|gb|ABC89974.1| cold shock protein [Rhizobium etli CFN 42]
          Length = 69

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N  KG+GFI P+   +   DVF+H SAV  AG+  LTEGQ V YD V++  
Sbjct: 1  MNSGVVKWFNGTKGFGFIQPD---DGSTDVFVHISAVERAGMRELTEGQKVRYDLVRDKR 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKNSADNLQ 67


>gi|159184158|ref|NP_353140.2| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|159139492|gb|AAK85925.2| cold shock protein [Agrobacterium tumefaciens str. C58]
          Length = 69

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   +   DVF+H SAV  AGL  L +GQ ++Y+ +Q+  
Sbjct: 1  MATGTVKWFNATKGYGFIQPD---DGSQDVFVHISAVERAGLTALNDGQKLSYELMQDRR 57

Query: 62 NGKYSAENL 70
          +GK SA  L
Sbjct: 58 SGKMSAGEL 66


>gi|241202847|ref|YP_002973943.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240856737|gb|ACS54404.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 69

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     GDD F+H SAV  AG+  L EGQ + +D  +++ 
Sbjct: 1  MATGTVKWFNSTKGFGFIQPD---NGGDDAFVHISAVERAGMRELVEGQKIGFDLERDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKMSACNLQ 67


>gi|163736844|ref|ZP_02144262.1| cold shock family protein [Phaeobacter gallaeciensis BS107]
 gi|163743998|ref|ZP_02151367.1| cold shock family protein [Phaeobacter gallaeciensis 2.10]
 gi|161382758|gb|EDQ07158.1| cold shock family protein [Phaeobacter gallaeciensis 2.10]
 gi|161389448|gb|EDQ13799.1| cold shock family protein [Phaeobacter gallaeciensis BS107]
          Length = 68

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+     G DVF+H SAV  +GL  L + Q VTY+  Q   
Sbjct: 1  MATGTVKWFNTTKGYGFIAPDA---GGSDVFVHISAVERSGLTGLADNQKVTYEL-QPGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N++L
Sbjct: 57 DGRESAVNIEL 67


>gi|296390681|ref|ZP_06880156.1| cold-shock protein [Pseudomonas aeruginosa PAb1]
          Length = 204

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++KW+N  KG+GFI+ +    SG+D+F+H  A+   G   L EGQ V +  VQ D 
Sbjct: 137 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 192

Query: 62  NGKYSAENL 70
                AE++
Sbjct: 193 G--LQAEDV 199


>gi|254245244|ref|ZP_04938566.1| hypothetical protein PA2G_06136 [Pseudomonas aeruginosa 2192]
 gi|126198622|gb|EAZ62685.1| hypothetical protein PA2G_06136 [Pseudomonas aeruginosa 2192]
          Length = 203

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++KW+N  KG+GFI+ +    SG+D+F+H  A+   G   L EGQ V +  VQ D 
Sbjct: 136 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 191

Query: 62  NGKYSAENL 70
                AE++
Sbjct: 192 G--LQAEDV 198


>gi|152987217|ref|YP_001349896.1| cold-shock protein [Pseudomonas aeruginosa PA7]
 gi|150962375|gb|ABR84400.1| probable cold-shock protein [Pseudomonas aeruginosa PA7]
          Length = 203

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++KW+N  KG+GFI+ +    SG+D+F+H  A+   G   L EGQ V +  VQ D 
Sbjct: 136 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 191

Query: 62  NGKYSAENL 70
                AE++
Sbjct: 192 G--LQAEDV 198


>gi|107100418|ref|ZP_01364336.1| hypothetical protein PaerPA_01001443 [Pseudomonas aeruginosa PACS2]
          Length = 204

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++KW+N  KG+GFI+ +    SG+D+F+H  A+   G   L EGQ V +  VQ D 
Sbjct: 137 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 192

Query: 62  NGKYSAENL 70
                AE++
Sbjct: 193 G--LQAEDV 199


>gi|116048886|ref|YP_792313.1| cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313105848|ref|ZP_07792111.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
 gi|115584107|gb|ABJ10122.1| probable cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310878613|gb|EFQ37207.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
          Length = 204

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++KW+N  KG+GFI+ +    SG+D+F+H  A+   G   L EGQ V +  VQ D 
Sbjct: 137 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 192

Query: 62  NGKYSAENL 70
                AE++
Sbjct: 193 G--LQAEDV 199


>gi|294677982|ref|YP_003578597.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003]
 gi|294476802|gb|ADE86190.1| cold shock protein CspA-2 [Rhodobacter capsulatus SB 1003]
          Length = 68

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+G    G DVF+H SAV  AGL  L++ Q ++++ + +  
Sbjct: 1  MATGTVKWFNTTKGYGFIAPDG---GGKDVFVHISAVERAGLKALSDNQKISFELI-SGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA +LKL+
Sbjct: 57 DGRSSAGDLKLL 68


>gi|289522213|ref|ZP_06439067.1| cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504049|gb|EFD25213.1| cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  KGYGFIT     + G DVF+H SA+   G   L EGQ V+++ VQ  
Sbjct: 1  MKTQGTVKWFNESKGYGFIT----ADGGKDVFVHYSAIQQDGFKTLAEGQRVSFEIVQG- 55

Query: 61 ANGKYSAEN 69
          + G  ++E 
Sbjct: 56 SKGPQASEV 64


>gi|302553359|ref|ZP_07305701.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
 gi|302559146|ref|ZP_07311488.1| cold shock transcription regulator protein [Streptomyces
          griseoflavus Tu4000]
 gi|302470977|gb|EFL34070.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
 gi|302476764|gb|EFL39857.1| cold shock transcription regulator protein [Streptomyces
          griseoflavus Tu4000]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF+H SA+ ++G  +L E Q V++D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQQVSFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN+  V
Sbjct: 58 G--PQAENVTPV 67


>gi|121602065|ref|YP_989256.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
          KC583]
 gi|120614242|gb|ABM44843.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
          KC583]
          Length = 69

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P    +   DVF+H SAV  +GL +L EGQ ++Y+ +++  
Sbjct: 1  MSTGIVKWFNATKGFGFIQP---NDGSADVFVHISAVERSGLNSLNEGQKISYEVLKDQR 57

Query: 62 NGKYSAENLKLV 73
          +GK+SA NL  +
Sbjct: 58 SGKFSAGNLSAL 69


>gi|45441055|ref|NP_992594.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
          91001]
 gi|51595732|ref|YP_069923.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953]
 gi|108806653|ref|YP_650569.1| cold shock-like protein [Yersinia pestis Antiqua]
 gi|108812775|ref|YP_648542.1| cold shock-like protein [Yersinia pestis Nepal516]
 gi|145599602|ref|YP_001163678.1| cold shock-like protein [Yersinia pestis Pestoides F]
 gi|149366623|ref|ZP_01888657.1| cold shock-like protein [Yersinia pestis CA88-4125]
 gi|153950801|ref|YP_001401574.1| cold shock domain-containing protein CspD [Yersinia
          pseudotuberculosis IP 31758]
 gi|162421201|ref|YP_001606104.1| cold shock domain-containing protein CspD [Yersinia pestis
          Angola]
 gi|165924529|ref|ZP_02220361.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165938992|ref|ZP_02227545.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|166009852|ref|ZP_02230750.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
          str. E1979001]
 gi|166211633|ref|ZP_02237668.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
          str. B42003004]
 gi|167399962|ref|ZP_02305480.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
          str. UG05-0454]
 gi|167419873|ref|ZP_02311626.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167424253|ref|ZP_02316006.1| cold shock domain protein CspD [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|167469765|ref|ZP_02334469.1| cold shock domain protein CspD [Yersinia pestis FV-1]
 gi|170024919|ref|YP_001721424.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186894809|ref|YP_001871921.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|218928514|ref|YP_002346389.1| cold shock-like protein [Yersinia pestis CO92]
 gi|229841332|ref|ZP_04461491.1| cold shock-like protein [Yersinia pestis biovar Orientalis str.
          PEXU2]
 gi|229843436|ref|ZP_04463582.1| cold shock-like protein [Yersinia pestis biovar Orientalis str.
          India 195]
 gi|229895809|ref|ZP_04510979.1| cold shock-like protein [Yersinia pestis Pestoides A]
 gi|229903189|ref|ZP_04518302.1| cold shock-like protein [Yersinia pestis Nepal516]
 gi|270486982|ref|ZP_06204056.1| cold shock domain protein CspD [Yersinia pestis KIM D27]
 gi|45435914|gb|AAS61471.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
          91001]
 gi|51589014|emb|CAH20632.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953]
 gi|108776423|gb|ABG18942.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108778566|gb|ABG12624.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
 gi|115347125|emb|CAL20018.1| cold shock-like protein [Yersinia pestis CO92]
 gi|145211298|gb|ABP40705.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|149290997|gb|EDM41072.1| cold shock-like protein [Yersinia pestis CA88-4125]
 gi|152962296|gb|ABS49757.1| cold shock domain protein CspD [Yersinia pseudotuberculosis IP
          31758]
 gi|162354016|gb|ABX87964.1| cold shock domain protein CspD [Yersinia pestis Angola]
 gi|165913139|gb|EDR31763.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|165923589|gb|EDR40721.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165991248|gb|EDR43549.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
          str. E1979001]
 gi|166207404|gb|EDR51884.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
          str. B42003004]
 gi|166962614|gb|EDR58635.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167050670|gb|EDR62078.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua
          str. UG05-0454]
 gi|167057102|gb|EDR66865.1| cold shock domain protein CspD [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169751453|gb|ACA68971.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186697835|gb|ACC88464.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229678959|gb|EEO75062.1| cold shock-like protein [Yersinia pestis Nepal516]
 gi|229689783|gb|EEO81844.1| cold shock-like protein [Yersinia pestis biovar Orientalis str.
          India 195]
 gi|229697698|gb|EEO87745.1| cold shock-like protein [Yersinia pestis biovar Orientalis str.
          PEXU2]
 gi|229700732|gb|EEO88761.1| cold shock-like protein [Yersinia pestis Pestoides A]
 gi|270335486|gb|EFA46263.1| cold shock domain protein CspD [Yersinia pestis KIM D27]
 gi|320015779|gb|ADV99350.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin
          35]
          Length = 87

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  +   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQIVNFDVHEGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|145594319|ref|YP_001158616.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440]
 gi|159037387|ref|YP_001536640.1| cold-shock DNA-binding domain-containing protein [Salinispora
          arenicola CNS-205]
 gi|145303656|gb|ABP54238.1| cold-shock DNA-binding protein family [Salinispora tropica
          CNB-440]
 gi|157916222|gb|ABV97649.1| cold-shock DNA-binding domain protein [Salinispora arenicola
          CNS-205]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFIT +G    G DVF+H SA+ ++G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQTSGYRTLEENQRVEFEIAQGQK 57

Query: 62 NGKYSAENLKLV 73
               AE ++ +
Sbjct: 58 G--PQAEQVRPL 67


>gi|126731183|ref|ZP_01746991.1| cold shock family protein [Sagittula stellata E-37]
 gi|126708485|gb|EBA07543.1| cold shock family protein [Sagittula stellata E-37]
          Length = 68

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE     G DVF+H SAV  +GL  L + Q V+Y+  Q   
Sbjct: 1  MATGTVKWFNTTKGYGFIQPES---GGKDVFVHISAVERSGLTGLADNQKVSYEL-QTGR 56

Query: 62 NGKYSAENLKLV 73
          +GK SA NL+L+
Sbjct: 57 DGKESAGNLELL 68


>gi|307332024|ref|ZP_07611115.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306882305|gb|EFN13400.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 69

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI     +E G DVF+H SA+ S G   L EG+ VT++ VQ   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQ---SEGGPDVFVHYSAINSRGFRELNEGERVTFE-VQQGQ 56

Query: 62 NGKYSAENLKLVP 74
           G  +A   + +P
Sbjct: 57 KGPQAANVERALP 69


>gi|300310729|ref|YP_003774821.1| cold-shock DNA-binding domain-containing protein [Herbaspirillum
          seropedicae SmR1]
 gi|300073514|gb|ADJ62913.1| cold-shock DNA-binding domain protein [Herbaspirillum seropedicae
          SmR1]
          Length = 68

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H SA+   G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|114328842|ref|YP_745999.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
 gi|114317016|gb|ABI63076.1| cold shock protein [Granulibacter bethesdensis CGDNIH1]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    + G DVF+H +AV +AGL  L EGQ VTY+      
Sbjct: 1  MATGTVKWFNATKGFGFIMP---QDGGKDVFVHITAVQAAGLRGLDEGQKVTYEVAME-- 55

Query: 62 NGKYSAENLKL 72
           GK +A NL++
Sbjct: 56 RGKAAATNLRV 66


>gi|92118260|ref|YP_577989.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91801154|gb|ABE63529.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 69

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    + G DVF+H SAV  AGL  L EGQ V ++   +  
Sbjct: 1  MTTGTVKWFNGQKGFGFIQP---NDGGSDVFVHISAVERAGLTGLAEGQKVNFELKTDKM 57

Query: 62 NGKYSAENLKL 72
           GK SAENL L
Sbjct: 58 RGKVSAENLSL 68


>gi|295112263|emb|CBL29013.1| cold-shock DNA-binding protein family [Synergistetes bacterium
          SGP1]
          Length = 66

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFIT     + G DVF+H SA+   G   L EGQ V+++ V N  
Sbjct: 1  MAQGTVKWFNESKGYGFIT----ADEGKDVFVHYSAIQGDGFKTLAEGQKVSFEIV-NGE 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 KGPQAANVEKL 66


>gi|295837165|ref|ZP_06824098.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|302521137|ref|ZP_07273479.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
 gi|318058035|ref|ZP_07976758.1| cold shock protein [Streptomyces sp. SA3_actG]
 gi|318079486|ref|ZP_07986818.1| cold shock protein [Streptomyces sp. SA3_actF]
 gi|295826381|gb|EFG64808.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|302430032|gb|EFL01848.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q VT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVTFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 58 G--PQAENVSAL 67


>gi|256375184|ref|YP_003098844.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
 gi|255919487|gb|ACU34998.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
          Length = 68

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N +KG+GFI+P+     G DVF+H S +   G   L E Q V ++  Q  
Sbjct: 1  MAVQGTVKWFNAEKGFGFISPD---NGGADVFVHYSEIQVNGYRTLEENQRVEFEIGQGQ 57

Query: 61 ANGKYSAE 68
             +  A 
Sbjct: 58 KGPQAQAV 65


>gi|294101897|ref|YP_003553755.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
 gi|293616877|gb|ADE57031.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  KGYGFIT    T+ G D+F+H SA+ + G   L EGQ V+++ V+  
Sbjct: 1  MTTQGTVKWFNASKGYGFIT----TDEGKDIFVHFSAIQTEGFKTLEEGQRVSFEIVEG- 55

Query: 61 ANGKYSAENLKL 72
            G+ +A   K+
Sbjct: 56 PKGEQAANVEKI 67


>gi|254470899|ref|ZP_05084302.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio
          sp. JE062]
 gi|211960041|gb|EEA95238.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio
          sp. JE062]
          Length = 68

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI PE   +   DVF+H SAV  +GL  L +GQ VT++  +   
Sbjct: 1  MAKGTVKWFNTTKGFGFIAPE---DGSKDVFVHISAVERSGLSTLADGQEVTFEL-ETGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA NL+ V
Sbjct: 57 DGRQSAVNLETV 68


>gi|134095623|ref|YP_001100698.1| RNA chaperone [Herminiimonas arsenicoxydans]
 gi|152983285|ref|YP_001354206.1| cold-shock DNA-binding domain-containing protein
          [Janthinobacterium sp. Marseille]
 gi|329905635|ref|ZP_08274166.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480]
 gi|133739526|emb|CAL62577.1| Cold shock-like protein CspD (CSP-D) [Herminiimonas
          arsenicoxydans]
 gi|151283362|gb|ABR91772.1| cold-shock DNA-binding domain protein [Janthinobacterium sp.
          Marseille]
 gi|327547557|gb|EGF32363.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|146280323|ref|YP_001170479.1| hypothetical protein Rsph17025_4329 [Rhodobacter sphaeroides ATCC
          17025]
 gi|145558564|gb|ABP73174.1| hypothetical protein Rsph17025_4329 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 68

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G      DVF+H SA+  AG+  L +GQ VT+D  + D 
Sbjct: 1  MATGTVKWFNTTKGFGFIAPAG---GSKDVFVHISALERAGIRQLDDGQAVTFDL-ERDR 56

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 57 NGRESATNLAL 67


>gi|27383360|ref|NP_774889.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27356535|dbj|BAC53514.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP KGYGFI P+     G+DVF+H SAV  AG  +L EG  V++D V+N  
Sbjct: 1  MAIGTVKWFNPTKGYGFIQPDS---GGNDVFVHISAVEKAGFTSLAEGAKVSFDIVKN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENL++
Sbjct: 56 RGKESAENLRI 66


>gi|297159497|gb|ADI09209.1| putative cold shock protein [Streptomyces bingchenggensis BCW-1]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q VT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQAVTFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENVS 65


>gi|242373700|ref|ZP_04819274.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W1]
 gi|242348668|gb|EES40270.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W1]
          Length = 77

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D
Sbjct: 11 IMKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQSVEFEVVEGD 66

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 67 -RGPQAANVVKL 77


>gi|30249291|ref|NP_841361.1| cold shock DNA-binding domain-containing protein [Nitrosomonas
          europaea ATCC 19718]
 gi|30180610|emb|CAD85223.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  +D+F H SA+   G   L EGQ V++D  Q   
Sbjct: 1  MTTGTVKWFNDAKGFGFITPD---DGSEDLFAHFSAINMNGFKTLREGQKVSFDVTQGQK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|260574813|ref|ZP_05842815.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
 gi|259022818|gb|EEW26112.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
          Length = 68

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI PEG      DVF+H +A+  AG+ +L +GQ VT+D  +   
Sbjct: 1  MAKGTVKWFNATKGFGFIAPEG---GKKDVFVHITALERAGIRSLADGQAVTFDI-EAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESATNLAL 67


>gi|291616667|ref|YP_003519409.1| CspE [Pantoea ananatis LMG 20103]
 gi|304395648|ref|ZP_07377531.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|308186006|ref|YP_003930137.1| Cold shock-like protein cspE (CSP-E) [Pantoea vagans C9-1]
 gi|317047280|ref|YP_004114928.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
          At-9b]
 gi|291151697|gb|ADD76281.1| CspE [Pantoea ananatis LMG 20103]
 gi|304356942|gb|EFM21306.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|308056516|gb|ADO08688.1| Cold shock-like protein cspE (CSP-E) [Pantoea vagans C9-1]
 gi|316948897|gb|ADU68372.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
 gi|327393093|dbj|BAK10515.1| cold shock-like protein CspE [Pantoea ananatis AJ13355]
          Length = 69

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   + A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-DGAKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVISL 69


>gi|304321935|ref|YP_003855578.1| Cold-shock DNA-binding domain protein [Parvularcula bermudensis
          HTCC2503]
 gi|303300837|gb|ADM10436.1| Cold-shock DNA-binding domain protein [Parvularcula bermudensis
          HTCC2503]
          Length = 69

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+   E G DVF+H SAV  AGL  L + Q V+Y+ VQ D 
Sbjct: 1  MATGTVKWFNAEKGFGFIKPD---EGGQDVFVHISAVQEAGLKGLDDNQRVSYEMVQ-DR 56

Query: 62 NGKYSAENLKLV 73
           G+ SA  LKL+
Sbjct: 57 RGRSSAGELKLM 68


>gi|296130972|ref|YP_003638222.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
 gi|296022787|gb|ADG76023.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI PE   + G DVF+H SA+ + G  +L E Q V +D VQ   
Sbjct: 1  MPTGIVKWFNAEKGFGFIAPE---DGGPDVFVHYSAIQTQGYRSLEENQRVQFD-VQAGP 56

Query: 62 NGKYSAEN 69
           G  ++  
Sbjct: 57 KGPQASNV 64


>gi|312829285|emb|CBX34127.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus
          ECT-R 2]
          Length = 66

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E     G DVF+H SA+A  G  +L EGQ V +D V+ D 
Sbjct: 1  MNNGTVKWFNAEKGFGFIERE----DGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGD- 55

Query: 62 NGKYSAENLKL 72
           G+ +A  +K+
Sbjct: 56 RGEQAANVVKI 66


>gi|229820912|ref|YP_002882438.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
          12333]
 gi|229566825|gb|ACQ80676.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
          12333]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +G    G DVF+H SA+ S G  +L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNSEKGYGFIAQDG---GGADVFVHYSAIESDGYRSLEEAQRVEFEITQGPK 57

Query: 62 NGKYSAENLKLV 73
               AE+++ V
Sbjct: 58 G--PQAESVRAV 67


>gi|75676560|ref|YP_318981.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
 gi|74421430|gb|ABA05629.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
          Nb-255]
          Length = 69

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    + G+DVF+H SAV  AGL  L EGQ V ++   +  
Sbjct: 1  MTTGTVKWFNGQKGFGFIQP---NDGGNDVFVHISAVERAGLSGLNEGQQVNFELKTDKM 57

Query: 62 NGKYSAENLKL 72
           GK SAENL L
Sbjct: 58 RGKVSAENLSL 68


>gi|294101358|ref|YP_003553216.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
 gi|293616338|gb|ADE56492.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
          Length = 66

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFIT    T+ G DVF+H SA+   G   L E Q V++D  Q + 
Sbjct: 1  MAQGTVKWFNDSKGYGFIT----TDEGKDVFVHYSAIMGDGFKTLAENQRVSFDVTQGE- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 KGPQAANVQKL 66


>gi|229819166|ref|YP_002880692.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
          12333]
 gi|229565079|gb|ACQ78930.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
          12333]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI PE   +   DVF H SA+ + G  +L E Q V +D  Q   
Sbjct: 1  MTIGTVKWFNAEKGFGFIAPE---DGSADVFAHYSAIVADGFRSLEENQRVEFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--PQASNIRPL 67


>gi|153813260|ref|ZP_01965928.1| hypothetical protein RUMOBE_03677 [Ruminococcus obeum ATCC 29174]
 gi|149830673|gb|EDM85764.1| hypothetical protein RUMOBE_03677 [Ruminococcus obeum ATCC 29174]
 gi|295108549|emb|CBL22502.1| cold-shock DNA-binding protein family [Ruminococcus obeum A2-162]
          Length = 66

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFIT     E G DVF+H SA+   G  +L EGQ VTYD  +  A
Sbjct: 1  MNKGTVKWFNAEKGYGFIT----GEDGADVFVHFSAINGEGFKSLDEGQAVTYDLTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGMQAANVTKL 66


>gi|115377442|ref|ZP_01464645.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365540|gb|EAU64572.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 100

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +G    G+DVF H +A+   G   L EGQ V +D  +   
Sbjct: 34 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLQEGQKVQFDVARGPK 90

Query: 62 NGKYSAENLK 71
               A+N++
Sbjct: 91 G--LQAQNVR 98


>gi|152964189|ref|YP_001359973.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
          SRS30216]
 gi|151358706|gb|ABS01709.1| putative cold-shock DNA-binding domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +G    G DVF+H SA+   G  +L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIEQDG---GGPDVFVHYSAIGGNGYRSLEENQRVEFEVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               AE+++ +
Sbjct: 58 G--PQAEDVRAL 67


>gi|74272681|gb|ABA01136.1| putative nucleic acid-binding protein [Chlamydomonas incerta]
          Length = 226

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  +G++KW+N  KG+GFITP G    G+D+F+H++ + S G  +L EG+ V ++ V+  
Sbjct: 5  LRQQGTVKWFNATKGFGFITPGG---GGEDLFVHQTNINSEGFRSLREGEAVEFE-VEAG 60

Query: 61 ANGKYSAENLK 71
           +G+  A N+ 
Sbjct: 61 PDGRSKAVNVT 71


>gi|299892776|gb|ADJ57697.1| cold shock protein [Caulobacter crescentus NA1000]
          Length = 176

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +KW+N  KG+GFI P+     G DVF+H SAV  AGL  L EGQ V Y+  Q+  +G
Sbjct: 110 TGVVKWFNTTKGFGFIQPD---NGGGDVFVHISAVERAGLRGLNEGQQVGYELEQDRRSG 166

Query: 64  KYSAENLKLV 73
           K SA NL+++
Sbjct: 167 KTSAGNLRIL 176



 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+NP KG+GFI PE   + G DVF+H +AV  +GL  L EG  V Y+  ++  
Sbjct: 1  MANGVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRR 57

Query: 62 NGKYSAENLKL 72
          +GK SA  L++
Sbjct: 58 SGKTSAGQLRV 68


>gi|125602074|gb|EAZ41399.1| hypothetical protein OsJ_25920 [Oryza sativa Japonica Group]
          Length = 238

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KG+GFITP+   + G+D+F+H+S++ S G  +L +G +V +    +  +G
Sbjct: 7  KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVG-SGNDG 62

Query: 64 KYSAENLK 71
          +  A N+ 
Sbjct: 63 RTKAVNVT 70


>gi|329940593|ref|ZP_08289874.1| cold shock protein [Streptomyces griseoaurantiacus M045]
 gi|329300654|gb|EGG44551.1| cold shock protein [Streptomyces griseoaurantiacus M045]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H SA+ S+G   L EGQ VT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSSGFRELQEGQAVTFDVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN+ LV
Sbjct: 58 G--PQAENINLV 67


>gi|223982871|ref|ZP_03633090.1| hypothetical protein HOLDEFILI_00364 [Holdemania filiformis DSM
          12042]
 gi|223965156|gb|EEF69449.1| hypothetical protein HOLDEFILI_00364 [Holdemania filiformis DSM
          12042]
          Length = 69

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KGYGFI+ +       D+F+H S +  +G  +L EGQ V+YD   ++ 
Sbjct: 1  MNTGKVKWFNAEKGYGFISDDNGQ---GDIFVHFSGINGSGYKSLEEGQKVSYDVENDER 57

Query: 62 NGKYSAENLKLV 73
          +GK  A N+ ++
Sbjct: 58 SGKTRAVNVTVL 69


>gi|206895854|ref|YP_002247469.1| hypothetical protein COPRO5265_1161 [Coprothermobacter
          proteolyticus DSM 5265]
 gi|206738471|gb|ACI17549.1| conserved domain protein [Coprothermobacter proteolyticus DSM
          5265]
          Length = 89

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW++  KGYGFIT +   +   DVF+H SA+   G  +L +G  V ++ V N  
Sbjct: 23 MYTGTVKWFDAKKGYGFITRD---DGEGDVFVHFSAIEGNGFKSLDQGDKVEFEIV-NGP 78

Query: 62 NGKYSAENLK 71
           G  +A+ +K
Sbjct: 79 KGPQAAKVVK 88


>gi|15676734|ref|NP_273879.1| cold-shock domain-contain protein [Neisseria meningitidis MC58]
 gi|59800853|ref|YP_207565.1| CspA [Neisseria gonorrhoeae FA 1090]
 gi|121634616|ref|YP_974861.1| putative transcriptional regulator [Neisseria meningitidis FAM18]
 gi|194098153|ref|YP_002001201.1| cold-shock domain family protein [Neisseria gonorrhoeae
          NCCP11945]
 gi|239998604|ref|ZP_04718528.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|240013727|ref|ZP_04720640.1| transcriptional regulator [Neisseria gonorrhoeae DGI18]
 gi|240016165|ref|ZP_04722705.1| transcriptional regulator [Neisseria gonorrhoeae FA6140]
 gi|240080309|ref|ZP_04724852.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|240112520|ref|ZP_04727010.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|240115260|ref|ZP_04729322.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|240117547|ref|ZP_04731609.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|240120797|ref|ZP_04733759.1| transcriptional regulator [Neisseria gonorrhoeae PID24-1]
 gi|240123102|ref|ZP_04736058.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|240125353|ref|ZP_04738239.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
 gi|240127806|ref|ZP_04740467.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|254493324|ref|ZP_05106495.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|254804709|ref|YP_003082930.1| putative cold-shock protein [Neisseria meningitidis alpha14]
 gi|260440922|ref|ZP_05794738.1| transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|268594462|ref|ZP_06128629.1| cold-shock domain-containing protein [Neisseria gonorrhoeae
          35/02]
 gi|268596458|ref|ZP_06130625.1| cold-shock domain-containing protein [Neisseria gonorrhoeae FA19]
 gi|268598590|ref|ZP_06132757.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268600943|ref|ZP_06135110.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268603250|ref|ZP_06137417.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268681730|ref|ZP_06148592.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|268683957|ref|ZP_06150819.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
 gi|268686202|ref|ZP_06153064.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|291044245|ref|ZP_06569954.1| cold-shock domain-containing protein [Neisseria gonorrhoeae DGI2]
 gi|293399442|ref|ZP_06643595.1| cold shock protein (beta-ribbon, CspA family) [Neisseria
          gonorrhoeae F62]
 gi|298368622|ref|ZP_06979940.1| cold shock transcription regulator protein [Neisseria sp. oral
          taxon 014 str. F0314]
 gi|313668692|ref|YP_004048976.1| transcriptional regulator [Neisseria lactamica ST-640]
 gi|319637942|ref|ZP_07992708.1| transcriptional regulator [Neisseria mucosa C102]
 gi|7226073|gb|AAF41249.1| cold-shock domain family protein [Neisseria meningitidis MC58]
 gi|59717748|gb|AAW89153.1| putative cold shock protein [Neisseria gonorrhoeae FA 1090]
 gi|120866322|emb|CAM10063.1| putative transcriptional regulator [Neisseria meningitidis FAM18]
 gi|193933443|gb|ACF29267.1| cold-shock domain family protein [Neisseria gonorrhoeae
          NCCP11945]
 gi|226512364|gb|EEH61709.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|254668251|emb|CBA05095.1| putative cold-shock protein [Neisseria meningitidis alpha14]
 gi|254670465|emb|CBA06133.1| cold-shock DNA-binding domain [Neisseria meningitidis alpha153]
 gi|254672382|emb|CBA05647.1| cold-shock DNA-binding domain [Neisseria meningitidis alpha275]
 gi|261392810|emb|CAX50391.1| putative cold shock protein [Neisseria meningitidis 8013]
 gi|268547851|gb|EEZ43269.1| cold-shock domain-containing protein [Neisseria gonorrhoeae
          35/02]
 gi|268550246|gb|EEZ45265.1| cold-shock domain-containing protein [Neisseria gonorrhoeae FA19]
 gi|268582721|gb|EEZ47397.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268585074|gb|EEZ49750.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268587381|gb|EEZ52057.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268622014|gb|EEZ54414.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|268624241|gb|EEZ56641.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
 gi|268626486|gb|EEZ58886.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|291011139|gb|EFE03135.1| cold-shock domain-containing protein [Neisseria gonorrhoeae DGI2]
 gi|291610011|gb|EFF39133.1| cold shock protein (beta-ribbon, CspA family) [Neisseria
          gonorrhoeae F62]
 gi|298282625|gb|EFI24112.1| cold shock transcription regulator protein [Neisseria sp. oral
          taxon 014 str. F0314]
 gi|308389012|gb|ADO31332.1| cold-shock domain-containing protein [Neisseria meningitidis
          alpha710]
 gi|309379406|emb|CBX21973.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006154|emb|CBN87615.1| putative transcriptional regulator [Neisseria lactamica 020-06]
 gi|317401097|gb|EFV81752.1| transcriptional regulator [Neisseria mucosa C102]
 gi|319410197|emb|CBY90535.1| putative cold shock protein [Neisseria meningitidis WUE 2594]
 gi|325127943|gb|EGC50845.1| cold-shock DNA-binding domain protein [Neisseria meningitidis
          N1568]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D      
Sbjct: 1  MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFDVT-TGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|238063836|ref|ZP_04608545.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|302866724|ref|YP_003835361.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
 gi|315503139|ref|YP_004082026.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|237885647|gb|EEP74475.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|302569583|gb|ADL45785.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
          27029]
 gi|315409758|gb|ADU07875.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFIT +G    G DVF+H SA+ ++G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQTSGYRTLEENQRVEFEIAQGQK 57

Query: 62 NGKYSAENLKLV 73
               AE ++ +
Sbjct: 58 G--PQAEQVRPI 67


>gi|152969227|ref|YP_001334336.1| cold shock protein CspE [Klebsiella pneumoniae subsp. pneumoniae
          MGH 78578]
 gi|156934856|ref|YP_001438772.1| cold shock protein CspE [Cronobacter sakazakii ATCC BAA-894]
 gi|262041285|ref|ZP_06014496.1| CspA family cold shock transcriptional regulator [Klebsiella
          pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|296103410|ref|YP_003613556.1| cold shock protein CspE [Enterobacter cloacae subsp. cloacae ATCC
          13047]
 gi|330006059|ref|ZP_08305477.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
 gi|150954076|gb|ABR76106.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
 gi|156533110|gb|ABU77936.1| hypothetical protein ESA_02704 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|259041401|gb|EEW42461.1| CspA family cold shock transcriptional regulator [Klebsiella
          pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|295057869|gb|ADF62607.1| cold shock protein CspE [Enterobacter cloacae subsp. cloacae ATCC
          13047]
 gi|295096620|emb|CBK85710.1| cold shock protein E (CspE) [Enterobacter cloacae subsp. cloacae
          NCTC 9394]
 gi|328535997|gb|EGF62410.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
          Length = 69

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   N A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVIAL 69


>gi|229544336|ref|ZP_04433395.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
 gi|229325475|gb|EEN91151.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI  E     GDDVF+H +A+   G   L EGQ V++D V+ + 
Sbjct: 1  MQNGKVKWFNNEKGYGFIEVE----GGDDVFVHFTAIQGEGFKTLEEGQAVSFDIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAANVTKL 66


>gi|134095543|ref|YP_001100618.1| cold shock DNA -binding domain-containing protein [Herminiimonas
          arsenicoxydans]
 gi|133739446|emb|CAL62496.1| Cold shock protein CspD [Herminiimonas arsenicoxydans]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H SA+   G   L EGQ V+++  Q   
Sbjct: 1  MQTGTVKWFNDSKGFGFITPDS---GGEDLFAHFSAITMEGFKTLKEGQKVSFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N+K
Sbjct: 58 G--KQASNIK 65


>gi|117927601|ref|YP_872152.1| cold-shock DNA-binding protein family protein [Acidothermus
          cellulolyticus 11B]
 gi|117648064|gb|ABK52166.1| cold-shock DNA-binding protein family [Acidothermus
          cellulolyticus 11B]
          Length = 92

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  +     G DVF+H +A+   G   L + Q V ++ VQ     
Sbjct: 27 QGTVKWFNAEKGFGFIAVD----GGQDVFVHYTAIQMEGYKTLDQNQRVEFEIVQGQKGP 82

Query: 64 KYSAE 68
          +  A 
Sbjct: 83 QADAV 87


>gi|319441307|ref|ZP_07990463.1| putative cold shock protein [Corynebacterium variabile DSM 44702]
          Length = 67

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+   +   D+F+H SA+ S+G  +L E Q V+++ V+  A
Sbjct: 1  MSTGTVKWFNAEKGFGFIAPD---DGSSDIFVHYSAIQSSGFRSLEEDQKVSFE-VEAGA 56

Query: 62 NGKYSAENLKL 72
           G  +A+   L
Sbjct: 57 KGPAAADVTVL 67


>gi|300021896|ref|YP_003754507.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299523717|gb|ADJ22186.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 68

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE   E G+DVF+H SAV  AGL +L EGQ + ++  +   
Sbjct: 1  MSNGTVKWFNGQKGYGFIQPE---EGGNDVFVHISAVERAGLQSLREGQKIYFE-TERGR 56

Query: 62 NGKYSAENLKLV 73
          NGK +A NL+ +
Sbjct: 57 NGKIAAVNLRPL 68


>gi|260884227|ref|ZP_05895841.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 9 str. C68]
 gi|260873755|gb|EEX80824.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 9 str. C68]
          Length = 64

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 3/64 (4%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+ S
Sbjct: 1  MKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGRSS 57

Query: 67 AENL 70
          A+NL
Sbjct: 58 ADNL 61


>gi|253579494|ref|ZP_04856763.1| cold-shock protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848995|gb|EES76956.1| cold-shock protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 66

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFIT     E G DVF+H SA+   G  +L EGQ VTYD  +  A
Sbjct: 1  MNKGTVKWFNAEKGYGFIT----GEDGADVFVHFSAINGEGFKSLEEGQAVTYDLTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGMQAANVTKL 66


>gi|149203521|ref|ZP_01880491.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
 gi|149143354|gb|EDM31393.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
          Length = 68

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G DVF+H SAV  AGL  L + Q VT+D  ++  
Sbjct: 1  MANGTVKWFNSTKGFGFIAPD---NGGKDVFVHISAVERAGLTGLADNQKVTFDI-ESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL+L
Sbjct: 57 DGRESASNLQL 67


>gi|284007198|emb|CBA72487.1| cold shock-like protein [Arsenophonus nasoniae]
          Length = 111

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G +KW+N  KG+GFITP   ++   DVF+H SA+   G   L EGQ V +   ++ + G
Sbjct: 47  KGQVKWFNESKGFGFITP---SDGSKDVFVHFSAIQGNGFKTLAEGQNVEFTI-EDGSKG 102

Query: 64  KYSAENLKL 72
             +A    L
Sbjct: 103 PAAANVTAL 111


>gi|167647685|ref|YP_001685348.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
          K31]
 gi|167350115|gb|ABZ72850.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
          Length = 179

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+NP KG+GFI PE   + G DVF+H +AV  +GL  L EG  VTY+  ++  
Sbjct: 1  MANGVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVTYEMEEDRR 57

Query: 62 NGKYSAENLKLVPKSS 77
          +GK SA NL++  + +
Sbjct: 58 SGKTSAGNLRVTGQGA 73



 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GFI P+     G D+F+H SAV  AGL  L EGQ V Y+  Q+  +GK S
Sbjct: 116 VKWFNSTKGFGFIQPD---NGGGDIFVHISAVERAGLRGLNEGQQVGYELEQDRRSGKTS 172

Query: 67  AENLKLV 73
           A NL+++
Sbjct: 173 AGNLRIL 179


>gi|149916334|ref|ZP_01904854.1| cold-shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
 gi|149809788|gb|EDM69640.1| cold-shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
          Length = 68

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   E G DVF+H SAV  +GL  L + Q V YD  Q+  
Sbjct: 1  MPTGTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVGYDL-QDGR 56

Query: 62 NGKYSAENLKLV 73
          +G+  A +LKL+
Sbjct: 57 DGRQMATDLKLL 68


>gi|329941434|ref|ZP_08290713.1| cold shock protein [Streptomyces griseoaurantiacus M045]
 gi|11933043|emb|CAC19357.1| cold-shock like protein [Streptomyces nodosus]
 gi|329299965|gb|EGG43864.1| cold shock protein [Streptomyces griseoaurantiacus M045]
          Length = 67

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ +++
Sbjct: 57 G--PQADMVRV 65


>gi|290958273|ref|YP_003489455.1| cold shock protein [Streptomyces scabiei 87.22]
 gi|260647799|emb|CBG70904.1| cold shock protein [Streptomyces scabiei 87.22]
          Length = 67

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q V++D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQQVSFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN+  V
Sbjct: 58 G--PQAENVTPV 67


>gi|326502466|dbj|BAJ95296.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326507234|dbj|BAJ95694.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 264

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI+P+   +  +D+F+H+S++ + G  +L EG++V +   + D +G
Sbjct: 8  KGTVKWFNDTKGFGFISPD---DGSEDLFVHQSSIKADGFRSLAEGEVVEFSVSEGD-DG 63

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 64 RTKAVDVT 71


>gi|188996315|ref|YP_001930566.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
          YO3AOP1]
 gi|225848260|ref|YP_002728423.1| hypothetical protein SULAZ_0431 [Sulfurihydrogenibium azorense
          Az-Fu1]
 gi|188931382|gb|ACD66012.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
          YO3AOP1]
 gi|225643394|gb|ACN98444.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 68

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KG+GFIT +   +   DVF+H SA+ S G   L EGQ V ++  Q++
Sbjct: 1  MRITGTVKWFNSKKGFGFITRD---DGQGDVFVHFSAIQSRGFKTLEEGQKVEFEIAQDE 57

Query: 61 ANGKYSAENLKL 72
            G  +A  +++
Sbjct: 58 -KGPKAANVVRV 68


>gi|124267649|ref|YP_001021653.1| cold-shock DNA-binding protein family protein [Methylibium
          petroleiphilum PM1]
 gi|124260424|gb|ABM95418.1| cold-shock DNA-binding protein family [Methylibium petroleiphilum
          PM1]
          Length = 89

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+DVF H SA+   G   L +G  V+++ V +  
Sbjct: 1  MVNGTVKWFNDAKGFGFIEPEG---GGEDVFAHFSAILMDGFRTLKQGARVSFELV-DGP 56

Query: 62 NGKYSAENLKLVPKSSN 78
           GK  A+N+  +   ++
Sbjct: 57 KGKL-AQNIAPLESRAD 72


>gi|224475930|ref|YP_002633536.1| putative cold-shock protein [Staphylococcus carnosus subsp.
          carnosus TM300]
 gi|222420537|emb|CAL27351.1| putative cold-shock protein [Staphylococcus carnosus subsp.
          carnosus TM300]
          Length = 67

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E    +GDDVF+H SA+   G   L EGQ V +D V+ D 
Sbjct: 1  MNNGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQGDGYKTLEEGQSVDFDIVEGD- 55

Query: 62 NGKYSAENLKL 72
           G+ +A  +K+
Sbjct: 56 RGEQAANVVKM 66


>gi|148272792|ref|YP_001222353.1| putative cold shock protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|170781984|ref|YP_001710316.1| cold shock protein [Clavibacter michiganensis subsp. sepedonicus]
 gi|147830722|emb|CAN01662.1| putative cold shock protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|169156552|emb|CAQ01703.1| cold shock protein [Clavibacter michiganensis subsp. sepedonicus]
          Length = 67

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+       DVF H SA+A+ G  +L E Q V ++  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAPD---NGTADVFAHYSAIATGGYKSLDENQKVEFEVAQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPL 67


>gi|54303445|ref|YP_133438.1| putative cold shock protein [Photobacterium profundum SS9]
 gi|46916875|emb|CAG23638.1| putative cold shock protein [Photobacterium profundum SS9]
          Length = 104

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 40  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 95

Query: 64  KYSAENLKL 72
             +A  + +
Sbjct: 96  LQAANVVAI 104


>gi|328884303|emb|CCA57542.1| Cold shock protein CspD [Streptomyces venezuelae ATCC 10712]
          Length = 67

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L E QLVT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINANGFRSLEENQLVTFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENVS 65


>gi|150376596|ref|YP_001313192.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|307315623|ref|ZP_07595160.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307321715|ref|ZP_07601104.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|150031143|gb|ABR63259.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
 gi|306892612|gb|EFN23409.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306898690|gb|EFN29353.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 69

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G D F+H SAV  AG+  + EGQ ++Y+  +++ 
Sbjct: 1  MTTGTVKWFNSTKGFGFIEPD---NGGADAFVHISAVERAGMREIVEGQKLSYELERDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKMSACNLQ 67


>gi|256374593|ref|YP_003098253.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
 gi|255918896|gb|ACU34407.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
          Length = 68

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI      + G DVF+H SA+   G   L EG  V ++  Q   
Sbjct: 1  MAVGTVKWFNSEKGYGFIA----ADGGPDVFVHYSAIMMDGFRTLAEGDRVEFEI-QAGR 55

Query: 62 NGKYSAENLK 71
          +G+  A +++
Sbjct: 56 DGRSQASDVR 65


>gi|324998904|ref|ZP_08120016.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          sp. P1]
          Length = 67

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGF+ P+G    G DVF+H SA+ + G   L EGQ V++D  Q   
Sbjct: 1  MAEGTVKWFNSEKGYGFLAPDG---GGADVFVHYSAIQTQGYKTLDEGQRVSFDIEQGQK 57

Query: 62 NGKYS 66
            + S
Sbjct: 58 GPQAS 62


>gi|323702916|ref|ZP_08114574.1| cold-shock DNA-binding domain protein [Desulfotomaculum
          nigrificans DSM 574]
 gi|323532174|gb|EGB22055.1| cold-shock DNA-binding domain protein [Desulfotomaculum
          nigrificans DSM 574]
          Length = 65

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI      E+G DVF+H SA+ + G   L EGQLV +D V+  A G
Sbjct: 2  QGKVKWFNANKGYGFIE----AETGSDVFVHYSAIQAEGYRTLEEGQLVQFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|144899530|emb|CAM76394.1| Cold-shock protein, DNA-binding [Magnetospirillum gryphiswaldense
          MSR-1]
          Length = 70

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   +  +D F+H SAV  +G+ +L EGQ + Y+ V +  
Sbjct: 1  MATGTVKWFNAQKGFGFIAPD---DGSNDAFVHISAVERSGIGDLREGQKIGYELVADRR 57

Query: 62 NGKYSAENLKLV 73
          +GK SA+NLKLV
Sbjct: 58 SGKMSADNLKLV 69


>gi|238792422|ref|ZP_04636056.1| Cold shock-like protein cspD [Yersinia intermedia ATCC 29909]
 gi|238728348|gb|EEQ19868.1| Cold shock-like protein cspD [Yersinia intermedia ATCC 29909]
          Length = 85

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|150389414|ref|YP_001319463.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus
          metalliredigens QYMF]
 gi|149949276|gb|ABR47804.1| putative cold-shock DNA-binding domain protein [Alkaliphilus
          metalliredigens QYMF]
          Length = 66

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFIT E    +GDDVF+H SA+   G   L EGQ V ++ +Q D 
Sbjct: 1  MEKGTVKWFNSEKGYGFITRE----NGDDVFVHFSAITMDGFKTLEEGQAVQFEIIQGDK 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQATNVE 64


>gi|134099636|ref|YP_001105297.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|291005458|ref|ZP_06563431.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|133912259|emb|CAM02372.1| cold-shock DNA-binding domain protein [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 66

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+   + G DVF+H SA+ + G  +L E Q V Y+  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPD---DGGPDVFVHYSAIDAGGFRSLEEDQRVNYEVTQG-P 56

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 57 KGPQAASV 64


>gi|238789632|ref|ZP_04633415.1| Cold shock-like protein cspD [Yersinia frederiksenii ATCC 33641]
 gi|238722185|gb|EEQ13842.1| Cold shock-like protein cspD [Yersinia frederiksenii ATCC 33641]
          Length = 85

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|315658306|ref|ZP_07911178.1| cold shock protein CspA [Staphylococcus lugdunensis M23590]
 gi|315496635|gb|EFU84958.1| cold shock protein CspA [Staphylococcus lugdunensis M23590]
          Length = 76

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 11 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQSVEFEVVEGD- 65

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 66 RGPQAANVVKL 76


>gi|261222631|ref|ZP_05936912.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          B1/94]
 gi|261318104|ref|ZP_05957301.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis B2/94]
 gi|261758673|ref|ZP_06002382.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          F5/99]
 gi|265984538|ref|ZP_06097273.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          83/13]
 gi|265999381|ref|ZP_05466081.2| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 2 str. 63/9]
 gi|260921215|gb|EEX87868.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          B1/94]
 gi|261297327|gb|EEY00824.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis B2/94]
 gi|261738657|gb|EEY26653.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          F5/99]
 gi|263093577|gb|EEZ17602.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 2 str. 63/9]
 gi|264663130|gb|EEZ33391.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          83/13]
          Length = 64

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 3/64 (4%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V+Y+ VQ+  +G+ S
Sbjct: 1  MKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGRSS 57

Query: 67 AENL 70
          A+NL
Sbjct: 58 ADNL 61


>gi|239826758|ref|YP_002949382.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70]
 gi|239807051|gb|ACS24116.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70]
          Length = 66

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI  E     G DVF+H +A+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQHGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|29830475|ref|NP_825109.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29607587|dbj|BAC71644.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 68

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVDFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ ++L
Sbjct: 57 G--PQADMVRL 65


>gi|291546919|emb|CBL20027.1| cold-shock DNA-binding protein family [Ruminococcus sp. SR1/5]
          Length = 66

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFIT     E G DVF+H SA+   G  +L EGQ V+YD  +  A
Sbjct: 1  MNKGTVKWFNAEKGYGFIT----GEDGQDVFVHFSAINGEGFKSLEEGQAVSYDLTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGMQAANVTKL 66


>gi|257057404|ref|YP_003135236.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
 gi|256587276|gb|ACU98409.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
          Length = 68

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI     +  G DVF+H SA+ + G   L EG  V ++      
Sbjct: 1  MAVGTVKWFNAEKGYGFIE----SPDGPDVFVHYSAIQAEGFRTLDEGDRVEFEIT-AGR 55

Query: 62 NGKYSAENLKLV 73
          +G+  A +++ +
Sbjct: 56 DGRSQAADVRKL 67


>gi|229141918|ref|ZP_04270444.1| hypothetical protein bcere0013_50050 [Bacillus cereus BDRD-ST26]
 gi|229199306|ref|ZP_04325973.1| hypothetical protein bcere0001_48080 [Bacillus cereus m1293]
 gi|228584166|gb|EEK42317.1| hypothetical protein bcere0001_48080 [Bacillus cereus m1293]
 gi|228641533|gb|EEK97838.1| hypothetical protein bcere0013_50050 [Bacillus cereus BDRD-ST26]
          Length = 65

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ V +D V+  A G
Sbjct: 2  QGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|158321031|ref|YP_001513538.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus
          oremlandii OhILAs]
 gi|158141230|gb|ABW19542.1| cold-shock DNA-binding domain protein [Alkaliphilus oremlandii
          OhILAs]
          Length = 66

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI+ E    +GDDVF+H SA+   G   L EGQ V ++ VQ D 
Sbjct: 1  MEKGTVKWFNSEKGYGFISRE----NGDDVFVHYSAITMDGFKTLEEGQAVNFEIVQGDK 56

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 57 G--PQATNVT 64


>gi|302544467|ref|ZP_07296809.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
 gi|307327771|ref|ZP_07606955.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|11933034|emb|CAC19354.1| cold-shock like protein [Streptomyces hygroscopicus]
 gi|297158355|gb|ADI08067.1| putative cold shock protein [Streptomyces bingchenggensis BCW-1]
 gi|302462085|gb|EFL25178.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
 gi|306886669|gb|EFN17671.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 68

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56

Query: 62 NGKYSAENLKL 72
               A+ +++
Sbjct: 57 G--PQADMVRV 65


>gi|148544717|ref|YP_001272087.1| cold-shock DNA-binding protein family protein [Lactobacillus
          reuteri DSM 20016]
 gi|184154069|ref|YP_001842410.1| cold shock protein [Lactobacillus reuteri JCM 1112]
 gi|194466976|ref|ZP_03072963.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri
          100-23]
 gi|227363842|ref|ZP_03847947.1| cold-shock protein [Lactobacillus reuteri MM2-3]
 gi|325683052|ref|ZP_08162568.1| cold-shock domain family protein [Lactobacillus reuteri MM4-1A]
 gi|148531751|gb|ABQ83750.1| cold-shock DNA-binding protein family [Lactobacillus reuteri DSM
          20016]
 gi|183225413|dbj|BAG25930.1| cold shock protein [Lactobacillus reuteri JCM 1112]
 gi|194454012|gb|EDX42909.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri
          100-23]
 gi|227071069|gb|EEI09387.1| cold-shock protein [Lactobacillus reuteri MM2-3]
 gi|324977402|gb|EGC14353.1| cold-shock domain family protein [Lactobacillus reuteri MM4-1A]
          Length = 66

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKGYGFIT E    SGDDVF+H SA+   G  +L+EGQ VT+D  + + 
Sbjct: 1  MEQGTVKWFNDDKGYGFITRE----SGDDVFVHFSAIQGDGFKSLSEGQHVTFDVEEGE- 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGLQAANVVK 65


>gi|293606230|ref|ZP_06688593.1| cold shock transcription regulator protein [Achromobacter
          piechaudii ATCC 43553]
 gi|292815377|gb|EFF74495.1| cold shock transcription regulator protein [Achromobacter
          piechaudii ATCC 43553]
 gi|317407692|gb|EFV87625.1| cold-shock protein [Achromobacter xylosoxidans C54]
          Length = 81

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITP+   + G+D+F H S++   G   L EGQ V ++ +Q    G
Sbjct: 17 TGTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQG-PKG 72

Query: 64 KYS 66
          K +
Sbjct: 73 KQA 75


>gi|251810833|ref|ZP_04825306.1| cold shock protein CspA [Staphylococcus epidermidis BCM-HMP0060]
 gi|293366631|ref|ZP_06613308.1| cold shock protein CspA [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|251805668|gb|EES58325.1| cold shock protein CspA [Staphylococcus epidermidis BCM-HMP0060]
 gi|291319400|gb|EFE59769.1| cold shock protein CspA [Staphylococcus epidermidis
          M23864:W2(grey)]
          Length = 77

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D
Sbjct: 11 IMKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD 66

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 67 -RGPQAANVVKL 77


>gi|256397223|ref|YP_003118787.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256363449|gb|ACU76946.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 67

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G  +L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGSDVFVHYSAIQMDGYRSLEENQRVEFEISQGQK 56

Query: 62 NGKYSAENLKLV 73
               A+ ++++
Sbjct: 57 G--PQADMVRVI 66


>gi|15924392|ref|NP_371926.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|15926982|ref|NP_374515.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus N315]
 gi|21283019|ref|NP_646107.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus MW2]
 gi|49483592|ref|YP_040816.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486243|ref|YP_043464.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651902|ref|YP_186289.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus COL]
 gi|82750994|ref|YP_416735.1| cold shock protein [Staphylococcus aureus RF122]
 gi|87161577|ref|YP_493992.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|88195129|ref|YP_499930.1| cold shock protein [Staphylococcus aureus subsp. aureus NCTC
          8325]
 gi|148267890|ref|YP_001246833.1| cold-shock DNA-binding domain-containing protein [Staphylococcus
          aureus subsp. aureus JH9]
 gi|150393953|ref|YP_001316628.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus JH1]
 gi|151221525|ref|YP_001332347.1| major cold-shock protein CspA [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|156979721|ref|YP_001441980.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          Mu3]
 gi|161509568|ref|YP_001575227.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|221140629|ref|ZP_03565122.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus str.
          JKD6009]
 gi|253315273|ref|ZP_04838486.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus str. CF-Marseille]
 gi|253732039|ref|ZP_04866204.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253733351|ref|ZP_04867516.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|255006191|ref|ZP_05144792.2| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus Mu50-omega]
 gi|257425466|ref|ZP_05601891.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 55/2053]
 gi|257428126|ref|ZP_05604524.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus 65-1322]
 gi|257430757|ref|ZP_05607139.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
          68-397]
 gi|257433517|ref|ZP_05609875.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
          E1410]
 gi|257436358|ref|ZP_05612405.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus M876]
 gi|257795543|ref|ZP_05644522.1| major cold shock protein CspA [Staphylococcus aureus A9781]
 gi|258413351|ref|ZP_05681627.1| major cold shock protein CspA [Staphylococcus aureus A9763]
 gi|258420542|ref|ZP_05683484.1| major cold shock protein CspA [Staphylococcus aureus A9719]
 gi|258423666|ref|ZP_05686554.1| CSD family cold shock protein [Staphylococcus aureus A9635]
 gi|258434686|ref|ZP_05688760.1| major cold-shock protein CspA [Staphylococcus aureus A9299]
 gi|258444738|ref|ZP_05693067.1| major cold shock protein [Staphylococcus aureus A8115]
 gi|258447427|ref|ZP_05695571.1| major cold shock protein CspA [Staphylococcus aureus A6300]
 gi|258449268|ref|ZP_05697371.1| major cold shock protein CspA [Staphylococcus aureus A6224]
 gi|258452191|ref|ZP_05700206.1| cold shock protein cspA [Staphylococcus aureus A5948]
 gi|258454648|ref|ZP_05702612.1| major cold shock protein CspA [Staphylococcus aureus A5937]
 gi|262050357|ref|ZP_06023200.1| major cold shock protein CspA [Staphylococcus aureus D30]
 gi|269203025|ref|YP_003282294.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus ED98]
 gi|282892895|ref|ZP_06301130.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A8117]
 gi|282903982|ref|ZP_06311870.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          C160]
 gi|282905747|ref|ZP_06313602.1| cold shock protein beta-ribbon CspA family protein
          [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908718|ref|ZP_06316536.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282910982|ref|ZP_06318784.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282914190|ref|ZP_06321977.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M899]
 gi|282916668|ref|ZP_06324426.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus
          D139]
 gi|282919112|ref|ZP_06326847.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
          C427]
 gi|282924295|ref|ZP_06331969.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus C101]
 gi|282927926|ref|ZP_06335535.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A10102]
 gi|282929069|ref|ZP_06336651.1| cold shock protein cspA [Staphylococcus aureus A9765]
 gi|283770473|ref|ZP_06343365.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus
          aureus subsp. aureus H19]
 gi|283958164|ref|ZP_06375615.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|284024402|ref|ZP_06378800.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus 132]
 gi|293501217|ref|ZP_06667068.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus 58-424]
 gi|293510178|ref|ZP_06668886.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus M809]
 gi|293526770|ref|ZP_06671455.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M1015]
 gi|294850737|ref|ZP_06791456.1| cold shock protein [Staphylococcus aureus A9754]
 gi|295406349|ref|ZP_06816156.1| cold shock protein [Staphylococcus aureus A8819]
 gi|295427915|ref|ZP_06820547.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275262|ref|ZP_06857769.1| stationary phase/starvation inducible regulatory protein CspD
          [Staphylococcus aureus subsp. aureus MR1]
 gi|297207943|ref|ZP_06924375.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|297244578|ref|ZP_06928461.1| cold shock protein CspB [Staphylococcus aureus A8796]
 gi|297591124|ref|ZP_06949762.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8]
 gi|300912027|ref|ZP_07129470.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|304381021|ref|ZP_07363676.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|81827857|sp|Q6G9F9|CSPA_STAAS RecName: Full=Cold shock protein CspA
 gi|81828019|sp|Q6GH06|CSPA_STAAR RecName: Full=Cold shock protein CspA
 gi|81832398|sp|Q7A0X3|CSPA_STAAW RecName: Full=Cold shock protein CspA
 gi|81832432|sp|Q7A2R8|CSPA_STAAM RecName: Full=Cold shock protein CspA
 gi|81832507|sp|Q7A5P3|CSPA_STAAN RecName: Full=Cold shock protein CspA
 gi|81859588|sp|Q5HG18|CSPA_STAAC RecName: Full=Cold shock protein CspA
 gi|118572254|sp|Q2FH36|CSPA_STAA3 RecName: Full=Cold shock protein CspA
 gi|118572255|sp|Q2FYN2|CSPA_STAA8 RecName: Full=Cold shock protein CspA
 gi|118572256|sp|Q2YY16|CSPA_STAAB RecName: Full=Cold shock protein CspA
 gi|8101860|gb|AAF72664.1|AF259960_1 major cold shock protein CspA [Staphylococcus aureus]
 gi|13701199|dbj|BAB42494.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus N315]
 gi|14247173|dbj|BAB57564.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|21204458|dbj|BAB95155.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus MW2]
 gi|49241721|emb|CAG40411.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244686|emb|CAG43119.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57286088|gb|AAW38182.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
          aureus COL]
 gi|82656525|emb|CAI80947.1| cold shock protein [Staphylococcus aureus RF122]
 gi|87127551|gb|ABD22065.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|87202687|gb|ABD30497.1| cold shock protein, putative [Staphylococcus aureus subsp. aureus
          NCTC 8325]
 gi|147740959|gb|ABQ49257.1| cold-shock DNA-binding protein family [Staphylococcus aureus
          subsp. aureus JH9]
 gi|149946405|gb|ABR52341.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus JH1]
 gi|150374325|dbj|BAF67585.1| major cold-shock protein CspA [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|156721856|dbj|BAF78273.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          Mu3]
 gi|160368377|gb|ABX29348.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|253724230|gb|EES92959.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253728703|gb|EES97432.1| major cold shock protein [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|257271923|gb|EEV04061.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 55/2053]
 gi|257274967|gb|EEV06454.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus 65-1322]
 gi|257278885|gb|EEV09504.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
          68-397]
 gi|257281610|gb|EEV11747.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
          E1410]
 gi|257284640|gb|EEV14760.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus M876]
 gi|257789515|gb|EEV27855.1| major cold shock protein CspA [Staphylococcus aureus A9781]
 gi|257839915|gb|EEV64383.1| major cold shock protein CspA [Staphylococcus aureus A9763]
 gi|257843490|gb|EEV67897.1| major cold shock protein CspA [Staphylococcus aureus A9719]
 gi|257846164|gb|EEV70190.1| CSD family cold shock protein [Staphylococcus aureus A9635]
 gi|257849047|gb|EEV73029.1| major cold-shock protein CspA [Staphylococcus aureus A9299]
 gi|257850231|gb|EEV74184.1| major cold shock protein [Staphylococcus aureus A8115]
 gi|257853618|gb|EEV76577.1| major cold shock protein CspA [Staphylococcus aureus A6300]
 gi|257857256|gb|EEV80154.1| major cold shock protein CspA [Staphylococcus aureus A6224]
 gi|257860128|gb|EEV82961.1| cold shock protein cspA [Staphylococcus aureus A5948]
 gi|257863031|gb|EEV85795.1| major cold shock protein CspA [Staphylococcus aureus A5937]
 gi|259161556|gb|EEW46155.1| major cold shock protein CspA [Staphylococcus aureus D30]
 gi|262075315|gb|ACY11288.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus ED98]
 gi|269940897|emb|CBI49280.1| cold shock protein [Staphylococcus aureus subsp. aureus TW20]
 gi|282313682|gb|EFB44075.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus C101]
 gi|282316922|gb|EFB47296.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus
          C427]
 gi|282319155|gb|EFB49507.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus
          D139]
 gi|282322258|gb|EFB52582.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M899]
 gi|282324677|gb|EFB54987.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282326982|gb|EFB57277.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282331039|gb|EFB60553.1| cold shock protein beta-ribbon CspA family protein
          [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590223|gb|EFB95303.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A10102]
 gi|282591856|gb|EFB96900.1| cold shock protein cspA [Staphylococcus aureus A9765]
 gi|282595600|gb|EFC00564.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          C160]
 gi|282764892|gb|EFC05017.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A8117]
 gi|283460620|gb|EFC07710.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus
          aureus subsp. aureus H19]
 gi|283470617|emb|CAQ49828.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
          aureus ST398]
 gi|283790313|gb|EFC29130.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|285817080|gb|ADC37567.1| Cold shock protein CspA [Staphylococcus aureus 04-02981]
 gi|290920842|gb|EFD97905.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M1015]
 gi|291096222|gb|EFE26483.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus 58-424]
 gi|291467122|gb|EFF09640.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus M809]
 gi|294822413|gb|EFG38863.1| cold shock protein [Staphylococcus aureus A9754]
 gi|294968937|gb|EFG44959.1| cold shock protein [Staphylococcus aureus A8819]
 gi|295128273|gb|EFG57907.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887411|gb|EFH26312.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|297178608|gb|EFH37854.1| cold shock protein CspB [Staphylococcus aureus A8796]
 gi|297576010|gb|EFH94726.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8]
 gi|298694697|gb|ADI97919.1| cold shock protein [Staphylococcus aureus subsp. aureus ED133]
 gi|300886273|gb|EFK81475.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|302333015|gb|ADL23208.1| putative cold-shock DNA-binding domain protein [Staphylococcus
          aureus subsp. aureus JKD6159]
 gi|302751231|gb|ADL65408.1| putative cold-shock DNA-binding domain protein [Staphylococcus
          aureus subsp. aureus str. JKD6008]
 gi|304340437|gb|EFM06376.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|312438198|gb|ADQ77269.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          TCH60]
 gi|312829797|emb|CBX34639.1| cold shock protein cspD [Staphylococcus aureus subsp. aureus
          ECT-R 2]
 gi|315131210|gb|EFT87194.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          CGS03]
 gi|315195294|gb|EFU25681.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          CGS00]
 gi|315195914|gb|EFU26279.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          CGS01]
 gi|320140790|gb|EFW32639.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus MRSA131]
 gi|320142182|gb|EFW34000.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus MRSA177]
 gi|323438687|gb|EGA96429.1| cold shock protein [Staphylococcus aureus O11]
 gi|323444056|gb|EGB01667.1| cold shock protein [Staphylococcus aureus O46]
 gi|329314078|gb|AEB88491.1| Cold shock protein cspA [Staphylococcus aureus subsp. aureus
          T0131]
 gi|329725310|gb|EGG61794.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 21189]
 gi|329733434|gb|EGG69766.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 21193]
          Length = 66

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQAVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|332971719|gb|EGK10667.1| cold shock protein CspA [Desmospora sp. 8437]
          Length = 65

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI  E     GDDVF+H SA+   G   L EGQ V ++ V+    G
Sbjct: 2  QGKVKWFNAEKGYGFIERE----GGDDVFVHYSAIQEEGFKTLDEGQTVEFEIVEG-PRG 56

Query: 64 KYSAENLK 71
            +A  +K
Sbjct: 57 PQAANVIK 64


>gi|300312332|ref|YP_003776424.1| cold shock-like transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
 gi|300075117|gb|ADJ64516.1| cold shock-like transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
          Length = 68

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E G+D+F H SA+ S G  +L E Q V+++      
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQSNGFKSLKENQRVSFEVT-TGP 56

Query: 62 NGKYSAENL 70
           GK ++  +
Sbjct: 57 KGKQASNIV 65


>gi|239929627|ref|ZP_04686580.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291437949|ref|ZP_06577339.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|294630786|ref|ZP_06709346.1| cold shock transcription regulator protein [Streptomyces sp. e14]
 gi|291340844|gb|EFE67800.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|292834119|gb|EFF92468.1| cold shock transcription regulator protein [Streptomyces sp. e14]
          Length = 67

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q V++D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINATGFRSLEENQQVSFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN+  V
Sbjct: 58 G--PQAENVTPV 67


>gi|76811741|ref|YP_332524.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|83720401|ref|YP_441317.1| cold-shock domain-contain protein [Burkholderia thailandensis
          E264]
 gi|76581194|gb|ABA50669.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|83654226|gb|ABC38289.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis E264]
          Length = 81

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++ VQ   
Sbjct: 15 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQGPK 71

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 72 G--KQASNIQ 79


>gi|169827740|ref|YP_001697898.1| cold shock protein [Lysinibacillus sphaericus C3-41]
 gi|168992228|gb|ACA39768.1| Cold shock protein [Lysinibacillus sphaericus C3-41]
          Length = 68

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ +G +KW+N +KGYGFI      + G+DVF+H + +   G   L EGQ V++D V+ +
Sbjct: 2  LMQQGIVKWFNNEKGYGFIE----CDDGEDVFVHFTGIQEEGFRTLEEGQKVSFDVVEGN 57

Query: 61 ANGKYSAENLKL 72
            G  ++  +KL
Sbjct: 58 -RGPQASNVVKL 68


>gi|114332012|ref|YP_748234.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
          eutropha C91]
 gi|114309026|gb|ABI60269.1| cold-shock DNA-binding protein family [Nitrosomonas eutropha C91]
          Length = 67

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  +D+F H SA+  +G   L EGQ V+++  Q   
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMSGFKTLKEGQKVSFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|237746806|ref|ZP_04577286.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
          HOxBLS]
 gi|229378157|gb|EEO28248.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
          HOxBLS]
          Length = 67

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E G+DVF H SA+ S G  +L E Q V++D      
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---EGGEDVFAHFSAINSEGFKSLKENQRVSFDITTGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 58 G--KQASNITVI 67


>gi|41052630|dbj|BAD08139.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group]
 gi|41052743|dbj|BAD07599.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group]
 gi|125580606|gb|EAZ21537.1| hypothetical protein OsJ_05164 [Oryza sativa Japonica Group]
 gi|187609561|gb|ACD13288.1| cold shock domain protein 1 [Oryza sativa Japonica Group]
 gi|215767546|dbj|BAG99774.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 241

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 47/70 (67%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           HRG++KW+N  KG+GFI+P+   +  +D+F+H+S++ + G  +L EG+ V +   +++ 
Sbjct: 6  RHRGTVKWFNDTKGFGFISPD---DGSEDLFVHQSSIKADGFRSLAEGEQVEFAISESE- 61

Query: 62 NGKYSAENLK 71
          +G+  A ++ 
Sbjct: 62 DGRTKAVDVT 71


>gi|220933677|ref|YP_002512576.1| putative cold-shock DNA-binding domain protein [Thioalkalivibrio
          sp. HL-EbGR7]
 gi|219994987|gb|ACL71589.1| putative cold-shock DNA-binding domain protein [Thioalkalivibrio
          sp. HL-EbGR7]
          Length = 67

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFITPE   + G DVF+H SA+ ++G   L EGQ+V+++      
Sbjct: 1  MSKGTVKWFNESKGFGFITPE---DGGKDVFVHFSAIEASGFRTLAEGQMVSFEVTNGPK 57

Query: 62 NGKYSAENLKLV 73
              +A N+K V
Sbjct: 58 G--LAAANVKPV 67


>gi|295688501|ref|YP_003592194.1| cold-shock DNA-binding domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295430404|gb|ADG09576.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC
           21756]
          Length = 175

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +KW+N  KG+GFI P+     G DVF+H SAV  AGL  L EGQ V Y+  Q+  +G
Sbjct: 109 TGVVKWFNTTKGFGFIQPD---NGGGDVFVHISAVERAGLRGLNEGQQVGYELEQDRRSG 165

Query: 64  KYSAENLKLV 73
           K SA NL+++
Sbjct: 166 KTSAGNLRIL 175



 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+NP KG+GFI PE   + G DVF+H +AV  +GL  L EG  V Y+  ++  
Sbjct: 1  MANGVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRR 57

Query: 62 NGKYSAENLKL 72
          +GK SA  L++
Sbjct: 58 SGKTSAGQLRV 68


>gi|209547690|ref|YP_002279607.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|209533446|gb|ACI53381.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 69

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + +D  +++ 
Sbjct: 1  MTTGTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFDLERDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKMSACNLQ 67


>gi|302530604|ref|ZP_07282946.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
 gi|302439499|gb|EFL11315.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
          Length = 67

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI     +  G DVF+H SA+ + G   L EG  V ++ VQ+  
Sbjct: 1  MAVGTVKWFNSEKGYGFIE----SPEGPDVFVHYSAIQADGFRTLDEGDRVEFE-VQSGR 55

Query: 62 NGKYSAENLKLV 73
          +G+  A +++ V
Sbjct: 56 DGRSQAADVRKV 67


>gi|302878597|ref|YP_003847161.1| cold-shock DNA-binding domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302581386|gb|ADL55397.1| cold-shock DNA-binding domain protein [Gallionella
          capsiferriformans ES-2]
          Length = 68

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI+P+   + GDD+F H SA+  +G  +L EGQ +++D  Q   
Sbjct: 1  MATGTVKWFNDEKGFGFISPD---DGGDDLFAHFSAINISGFKSLKEGQKISFDVAQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+++V
Sbjct: 58 G--RQASNIQIV 67


>gi|220911902|ref|YP_002487211.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|219858780|gb|ACL39122.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
          Length = 67

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI+P+   +S  DVF H SA+ S+G  +L E Q V++D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFISPD---DSSQDVFAHYSAINSSGFRSLEENQKVSFDTEQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--PQATNIQAL 67


>gi|325981354|ref|YP_004293756.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
          sp. AL212]
 gi|325530873|gb|ADZ25594.1| cold-shock DNA-binding domain protein [Nitrosomonas sp. AL212]
          Length = 67

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  +D+F H SA+  +G   L EGQ V++D  Q   
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMSGFKTLKEGQKVSFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|221639814|ref|YP_002526076.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          KD131]
 gi|221160595|gb|ACM01575.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          KD131]
          Length = 83

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L++ Q + Y+  Q+  
Sbjct: 16 MPTGTVKWFNSTKGFGFIAPD---DGGKDVFVHISAVERAGLKGLSDNQKIGYEL-QSGR 71

Query: 62 NGKYSAENLKLV 73
          +G+ SA +L+L+
Sbjct: 72 DGRSSAGDLRLL 83


>gi|253989236|ref|YP_003040592.1| cold shock protein [Photorhabdus asymbiotica subsp. asymbiotica
          ATCC 43949]
 gi|253780686|emb|CAQ83848.1| cold shock protein [Photorhabdus asymbiotica]
          Length = 69

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITP    +   DVF+H SA+ S G   L EGQ V ++  Q+   G
Sbjct: 5  TGTVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSDGFKTLAEGQKVEFEI-QDGQKG 60

Query: 64 KYSAEN 69
            +A  
Sbjct: 61 PSAANV 66


>gi|170745312|ref|YP_001766769.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium radiotolerans JCM 2831]
 gi|170658913|gb|ACB27967.1| cold-shock DNA-binding domain protein [Methylobacterium
          radiotolerans JCM 2831]
          Length = 69

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AG+  L EGQ V+Y+   +  
Sbjct: 1  MTIGTVKWFNDTKGFGFIQPD---DGGKDVFVHISAVERAGMQGLNEGQKVSYEMETDRR 57

Query: 62 NGKYSAENLK 71
           GK SA +L+
Sbjct: 58 TGKQSAGSLQ 67


>gi|89098567|ref|ZP_01171450.1| cold shock protein [Bacillus sp. NRRL B-14911]
 gi|89086812|gb|EAR65930.1| cold shock protein [Bacillus sp. NRRL B-14911]
          Length = 66

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI      E G+DVF+H SA+ S G  +L EGQ V+++ V+  A
Sbjct: 1  MKNGKVKWFNAEKGFGFIE----AEDGNDVFVHYSAIQSEGFKSLEEGQEVSFEVVEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAANVTKL 66


>gi|241518615|ref|YP_002979243.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240863028|gb|ACS60692.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 69

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + ++  +++ 
Sbjct: 1  MTTGTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFELERDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKMSACNLQ 67


>gi|163856975|ref|YP_001631273.1| cold-shock protein [Bordetella petrii DSM 12804]
 gi|163260703|emb|CAP43005.1| cold-shock protein [Bordetella petrii]
          Length = 81

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITP+   + G+D+F H S++   G   L EGQ V ++ +Q    G
Sbjct: 17 TGTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQG-PKG 72

Query: 64 KYS 66
          K +
Sbjct: 73 KQA 75


>gi|254786018|ref|YP_003073447.1| cold shock domain-containing protein CspD [Teredinibacter
          turnerae T7901]
 gi|237686702|gb|ACR13966.1| cold shock domain protein CspD [Teredinibacter turnerae T7901]
          Length = 95

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S+V   G   L  GQ V++D  Q D 
Sbjct: 1  MPTGTVKWFNNAKGFGFILPEG---GGEDLFAHYSSVEMDGYRTLKAGQPVSFDIEQGDK 57

Query: 62 NGKYSAENLKLVPKSSN 78
               A++++++   ++
Sbjct: 58 G--LHAKHIRVLKTPAS 72


>gi|238749794|ref|ZP_04611299.1| Cold shock-like protein cspD [Yersinia rohdei ATCC 43380]
 gi|238712449|gb|EEQ04662.1| Cold shock-like protein cspD [Yersinia rohdei ATCC 43380]
          Length = 85

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|313900176|ref|ZP_07833676.1| cold shock protein CspB [Clostridium sp. HGF2]
 gi|312955228|gb|EFR36896.1| cold shock protein CspB [Clostridium sp. HGF2]
          Length = 66

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFIT    ++ G D+F+H S++ S G   L EGQ V +D V++D 
Sbjct: 1  MSTGKVKWFNAEKGYGFIT----SDEGKDIFVHYSSIQSDGFRTLEEGQAVNFDVVESDR 56

Query: 62 NGKYSAENLKL 72
               A N+ +
Sbjct: 57 G--QQAANVTV 65


>gi|163853561|ref|YP_001641604.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218532421|ref|YP_002423237.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240140980|ref|YP_002965460.1| DNA-binding transcriptional repressor [Methylobacterium
          extorquens AM1]
 gi|254563491|ref|YP_003070586.1| DNA-binding transcriptional repressor [Methylobacterium
          extorquens DM4]
 gi|163665166|gb|ABY32533.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|218524724|gb|ACK85309.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|240010957|gb|ACS42183.1| DNA-binding transcriptional repressor [Methylobacterium
          extorquens AM1]
 gi|254270769|emb|CAX26774.1| DNA-binding transcriptional repressor [Methylobacterium
          extorquens DM4]
          Length = 69

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   +   DVF+H SAV  AGL  LTEGQ V+Y+   +  
Sbjct: 1  MSIGTVKWFNEQKGFGFIQPE---DGSKDVFVHISAVERAGLRGLTEGQKVSYEMETDRR 57

Query: 62 NGKYSAENLKL 72
          +GK SA  L++
Sbjct: 58 SGKQSAGQLQV 68


>gi|90021330|ref|YP_527157.1| cold-shock DNA-binding protein family protein [Saccharophagus
          degradans 2-40]
 gi|89950930|gb|ABD80945.1| cold-shock DNA-binding protein family [Saccharophagus degradans
          2-40]
          Length = 89

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 7/79 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G+D+F H S++   G   L  GQ VT++  + D 
Sbjct: 1  MPTGTVKWFNNAKGFGFILPDA---GGEDLFAHYSSIEMEGYRTLKAGQPVTFEIEKGDK 57

Query: 62 NGKYSAENLKL--VPKSSN 78
               A+N++   +P++S 
Sbjct: 58 G--LHAKNIQCTDLPETSE 74


>gi|148258722|ref|YP_001243307.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
          BTAi1]
 gi|146410895|gb|ABQ39401.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
          Length = 69

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI P    + G DVF+H SAV  AGL  L EGQ V +D   +  
Sbjct: 1  MPQGTVKWFNGQKGFGFIQP---QDGGTDVFVHISAVERAGLGGLAEGQKVNFDLKTDKM 57

Query: 62 NGKYSAENLKL 72
           GK SAENL L
Sbjct: 58 RGKVSAENLSL 68


>gi|116250220|ref|YP_766058.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254868|emb|CAK05942.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
          Length = 69

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G D F+H SAV  AG+ +L EGQ + +D  +++ 
Sbjct: 1  MTTGTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRDLVEGQKIGFDLERDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKMSACNLQ 67


>gi|290476206|ref|YP_003469106.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Xenorhabdus bovienii SS-2004]
 gi|289175539|emb|CBJ82342.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Xenorhabdus bovienii SS-2004]
          Length = 69

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++  +  A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEITEG-AKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVVPI 69


>gi|261343563|ref|ZP_05971208.1| conserved domain protein [Providencia rustigianii DSM 4541]
 gi|282568712|gb|EFB74247.1| conserved domain protein [Providencia rustigianii DSM 4541]
          Length = 69

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++  +    G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAITSDGFKTLAEGQRVEFEITEG-PKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVISL 69


>gi|329936006|ref|ZP_08285806.1| cold shock protein [Streptomyces griseoaurantiacus M045]
 gi|329304484|gb|EGG48362.1| cold shock protein [Streptomyces griseoaurantiacus M045]
          Length = 67

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q V++D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVSFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 58 G--PQAENVTPM 67


>gi|182679940|ref|YP_001834086.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
          indica subsp. indica ATCC 9039]
 gi|182635823|gb|ACB96597.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 69

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P    +   DVF+H SAV  + L  L EGQ+V+Y+  ++  
Sbjct: 1  MANGTVKWFNTTKGYGFIAP---QDGSKDVFVHISAVERSQLRELVEGQVVSYELQRDQR 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKESAVNLR 67


>gi|15800338|ref|NP_286350.1| cold shock protein CspE [Escherichia coli O157:H7 EDL933]
 gi|15829916|ref|NP_308689.1| cold shock protein CspE [Escherichia coli O157:H7 str. Sakai]
 gi|16128606|ref|NP_415156.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. MG1655]
 gi|30062187|ref|NP_836358.1| cold shock protein CspE [Shigella flexneri 2a str. 2457T]
 gi|56479711|ref|NP_706586.2| cold shock protein CspE [Shigella flexneri 2a str. 301]
 gi|74311159|ref|YP_309578.1| cold shock protein CspE [Shigella sonnei Ss046]
 gi|82543070|ref|YP_407017.1| cold shock protein CspE [Shigella boydii Sb227]
 gi|82775893|ref|YP_402240.1| cold shock protein CspE [Shigella dysenteriae Sd197]
 gi|89107492|ref|AP_001272.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. W3110]
 gi|110640853|ref|YP_668581.1| cold shock protein CspE [Escherichia coli 536]
 gi|157157595|ref|YP_001461790.1| cold shock protein CspE [Escherichia coli E24377A]
 gi|157160119|ref|YP_001457437.1| cold shock protein CspE [Escherichia coli HS]
 gi|161486286|ref|NP_752643.2| cold shock protein CspE [Escherichia coli CFT073]
 gi|161504197|ref|YP_001571309.1| cold shock protein CspE [Salmonella enterica subsp. arizonae
          serovar 62:z4,z23:-- str. RSK2980]
 gi|168752651|ref|ZP_02777673.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4113]
 gi|168754726|ref|ZP_02779733.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4401]
 gi|168770227|ref|ZP_02795234.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4486]
 gi|168774688|ref|ZP_02799695.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4196]
 gi|168779115|ref|ZP_02804122.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4076]
 gi|168786472|ref|ZP_02811479.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC869]
 gi|168798185|ref|ZP_02823192.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC508]
 gi|170021018|ref|YP_001725972.1| cold shock protein CspE [Escherichia coli ATCC 8739]
 gi|170080204|ref|YP_001729524.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. DH10B]
 gi|170080305|ref|YP_001729625.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. DH10B]
 gi|170682098|ref|YP_001742740.1| cold shock protein CspE [Escherichia coli SMS-3-5]
 gi|170767751|ref|ZP_02902204.1| cold shock protein CspE [Escherichia albertii TW07627]
 gi|187731707|ref|YP_001879293.1| cold shock protein CspE [Shigella boydii CDC 3083-94]
 gi|188493277|ref|ZP_03000547.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|191167329|ref|ZP_03029145.1| cold shock protein CspE [Escherichia coli B7A]
 gi|191172339|ref|ZP_03033881.1| cold shock protein CspE [Escherichia coli F11]
 gi|193063391|ref|ZP_03044481.1| cold shock protein CspE [Escherichia coli E22]
 gi|193069066|ref|ZP_03050024.1| cold shock protein CspE [Escherichia coli E110019]
 gi|194427975|ref|ZP_03060520.1| cold shock protein CspE [Escherichia coli B171]
 gi|194432522|ref|ZP_03064808.1| cold shock protein CspE [Shigella dysenteriae 1012]
 gi|194437525|ref|ZP_03069622.1| cold shock protein CspE [Escherichia coli 101-1]
 gi|195936173|ref|ZP_03081555.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4024]
 gi|208816170|ref|ZP_03257349.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4045]
 gi|208823205|ref|ZP_03263523.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4042]
 gi|209399192|ref|YP_002269259.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4115]
 gi|209917882|ref|YP_002291966.1| cold shock protein CspE [Escherichia coli SE11]
 gi|215485665|ref|YP_002328096.1| cold shock protein CspE [Escherichia coli O127:H6 str. E2348/69]
 gi|217324540|ref|ZP_03440624.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14588]
 gi|218549799|ref|YP_002383590.1| cold shock protein CspE [Escherichia fergusonii ATCC 35469]
 gi|218553166|ref|YP_002386079.1| cold shock protein CspE [Escherichia coli IAI1]
 gi|218557563|ref|YP_002390476.1| cold shock protein CspE [Escherichia coli S88]
 gi|218688447|ref|YP_002396659.1| cold shock protein CspE [Escherichia coli ED1a]
 gi|218694064|ref|YP_002401731.1| cold shock protein CspE [Escherichia coli 55989]
 gi|218698996|ref|YP_002406625.1| cold shock protein CspE [Escherichia coli IAI39]
 gi|218703957|ref|YP_002411476.1| cold shock protein CspE [Escherichia coli UMN026]
 gi|227884397|ref|ZP_04002202.1| cold shock protein CspE [Escherichia coli 83972]
 gi|238899902|ref|YP_002925698.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
 gi|253774390|ref|YP_003037221.1| cold shock protein CspE [Escherichia coli 'BL21-Gold(DE3)pLysS
          AG']
 gi|254160706|ref|YP_003043814.1| cold shock protein CspE [Escherichia coli B str. REL606]
 gi|254791790|ref|YP_003076627.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14359]
 gi|256020576|ref|ZP_05434441.1| cold shock protein CspE [Shigella sp. D9]
 gi|256023764|ref|ZP_05437629.1| cold shock protein CspE [Escherichia sp. 4_1_40B]
 gi|260842850|ref|YP_003220628.1| DNA-binding transcriptional repressor CspE [Escherichia coli
          O103:H2 str. 12009]
 gi|260853876|ref|YP_003227767.1| DNA-binding transcriptional repressor CspE [Escherichia coli
          O26:H11 str. 11368]
 gi|260866772|ref|YP_003233174.1| DNA-binding transcriptional repressor CspE [Escherichia coli
          O111:H- str. 11128]
 gi|261224091|ref|ZP_05938372.1| cold shock protein CspE [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257785|ref|ZP_05950318.1| cold shock protein CspE [Escherichia coli O157:H7 str. FRIK966]
 gi|291281575|ref|YP_003498393.1| hypothetical protein G2583_0787 [Escherichia coli O55:H7 str.
          CB9615]
 gi|293403886|ref|ZP_06647880.1| cold shock-like protein cspE [Escherichia coli FVEC1412]
 gi|293408749|ref|ZP_06652588.1| cold shock protein cspE [Escherichia coli B354]
 gi|293413920|ref|ZP_06656569.1| cold shock-like protein cspE [Escherichia coli B185]
 gi|293418735|ref|ZP_06661170.1| cold shock protein [Escherichia coli B088]
 gi|298379662|ref|ZP_06989267.1| cold shock protein CspG [Escherichia coli FVEC1302]
 gi|300817859|ref|ZP_07098073.1| cold shock protein CspE [Escherichia coli MS 107-1]
 gi|300823062|ref|ZP_07103196.1| cold shock protein CspE [Escherichia coli MS 119-7]
 gi|300901127|ref|ZP_07119236.1| cold shock protein CspE [Escherichia coli MS 198-1]
 gi|300907798|ref|ZP_07125415.1| cold shock protein CspE [Escherichia coli MS 84-1]
 gi|300920567|ref|ZP_07136990.1| cold shock protein CspE [Escherichia coli MS 115-1]
 gi|300927278|ref|ZP_07143006.1| cold shock protein CspE [Escherichia coli MS 182-1]
 gi|300931553|ref|ZP_07146869.1| cold shock protein CspE [Escherichia coli MS 187-1]
 gi|300939622|ref|ZP_07154275.1| cold shock protein CspE [Escherichia coli MS 21-1]
 gi|300951119|ref|ZP_07164985.1| cold shock protein CspE [Escherichia coli MS 116-1]
 gi|300959188|ref|ZP_07171269.1| cold shock protein CspE [Escherichia coli MS 175-1]
 gi|300990086|ref|ZP_07179098.1| cold shock protein CspE [Escherichia coli MS 45-1]
 gi|300996792|ref|ZP_07181533.1| cold shock protein CspE [Escherichia coli MS 200-1]
 gi|301025248|ref|ZP_07188814.1| cold shock protein CspE [Escherichia coli MS 69-1]
 gi|301028903|ref|ZP_07192073.1| cold shock protein CspE [Escherichia coli MS 196-1]
 gi|301049818|ref|ZP_07196758.1| cold shock protein CspE [Escherichia coli MS 185-1]
 gi|301302102|ref|ZP_07208235.1| cold shock protein CspE [Escherichia coli MS 124-1]
 gi|301329140|ref|ZP_07222141.1| cold shock protein CspE [Escherichia coli MS 78-1]
 gi|301643967|ref|ZP_07243991.1| cold shock protein CspE [Escherichia coli MS 146-1]
 gi|306812944|ref|ZP_07447137.1| cold shock protein CspE [Escherichia coli NC101]
 gi|307137241|ref|ZP_07496597.1| cold shock protein CspE [Escherichia coli H736]
 gi|307312660|ref|ZP_07592292.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|309785945|ref|ZP_07680574.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
 gi|309795509|ref|ZP_07689926.1| cold shock protein CspE [Escherichia coli MS 145-7]
 gi|312965070|ref|ZP_07779307.1| cold shock-like protein cspI [Escherichia coli 2362-75]
 gi|312970704|ref|ZP_07784885.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|331656651|ref|ZP_08357613.1| cold shock protein [Escherichia coli TA206]
 gi|331661988|ref|ZP_08362911.1| cold shock protein [Escherichia coli TA143]
 gi|331666976|ref|ZP_08367850.1| cold shock protein [Escherichia coli TA271]
 gi|331682045|ref|ZP_08382669.1| cold shock protein [Escherichia coli H299]
 gi|71154156|sp|P0A974|CSPE_ECO57 RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|71154157|sp|P0A973|CSPE_ECOL6 RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|71154158|sp|P0A972|CSPE_ECOLI RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|71154159|sp|P0A975|CSPE_SHIFL RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|12513525|gb|AAG54958.1|AE005242_2 cold shock protein [Escherichia coli O157:H7 str. EDL933]
 gi|471099|dbj|BAA05856.1| CspE (MsmC) [Escherichia coli]
 gi|833769|gb|AAA67556.1| gicA [Escherichia coli str. K-12 substr. W3110]
 gi|1651256|dbj|BAA35266.1| DNA-binding transcriptional repressor [Escherichia coli str. K12
          substr. W3110]
 gi|1786841|gb|AAC73724.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. MG1655]
 gi|3851642|gb|AAC72388.1| unknown [Vibrio cholerae]
 gi|13360120|dbj|BAB34085.1| cold shock protein [Escherichia coli O157:H7 str. Sakai]
 gi|26986712|gb|AAN86720.1| CspE [Escherichia coli]
 gi|30040432|gb|AAP16164.1| cold shock protein [Shigella flexneri 2a str. 2457T]
 gi|56383262|gb|AAN42293.2| cold shock protein [Shigella flexneri 2a str. 301]
 gi|73854636|gb|AAZ87343.1| cold shock protein [Shigella sonnei Ss046]
 gi|81240041|gb|ABB60751.1| cold shock protein [Shigella dysenteriae Sd197]
 gi|81244481|gb|ABB65189.1| cold shock protein [Shigella boydii Sb227]
 gi|110342445|gb|ABG68682.1| cold shock-like protein CspE [Escherichia coli 536]
 gi|157065799|gb|ABV05054.1| cold shock protein CspE [Escherichia coli HS]
 gi|157079625|gb|ABV19333.1| cold shock protein CspE [Escherichia coli E24377A]
 gi|160865544|gb|ABX22167.1| hypothetical protein SARI_02304 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|169755946|gb|ACA78645.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|169888039|gb|ACB01746.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. DH10B]
 gi|169888140|gb|ACB01847.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. DH10B]
 gi|170123239|gb|EDS92170.1| cold shock protein CspE [Escherichia albertii TW07627]
 gi|170519816|gb|ACB17994.1| cold shock protein CspE [Escherichia coli SMS-3-5]
 gi|187428699|gb|ACD07973.1| cold shock protein CspE [Shigella boydii CDC 3083-94]
 gi|187769726|gb|EDU33570.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4196]
 gi|188013582|gb|EDU51704.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4113]
 gi|188488476|gb|EDU63579.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|189002843|gb|EDU71829.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4076]
 gi|189358116|gb|EDU76535.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4401]
 gi|189360875|gb|EDU79294.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4486]
 gi|189373655|gb|EDU92071.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC869]
 gi|189379324|gb|EDU97740.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC508]
 gi|190902578|gb|EDV62311.1| cold shock protein CspE [Escherichia coli B7A]
 gi|190907438|gb|EDV67035.1| cold shock protein CspE [Escherichia coli F11]
 gi|192930975|gb|EDV83579.1| cold shock protein CspE [Escherichia coli E22]
 gi|192957610|gb|EDV88055.1| cold shock protein CspE [Escherichia coli E110019]
 gi|194413950|gb|EDX30227.1| cold shock protein CspE [Escherichia coli B171]
 gi|194419083|gb|EDX35166.1| cold shock protein CspE [Shigella dysenteriae 1012]
 gi|194423694|gb|EDX39684.1| cold shock protein CspE [Escherichia coli 101-1]
 gi|208732818|gb|EDZ81506.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4045]
 gi|208737398|gb|EDZ85082.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4042]
 gi|209160592|gb|ACI38025.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4115]
 gi|209777218|gb|ACI86921.1| cold shock protein [Escherichia coli]
 gi|209777220|gb|ACI86922.1| cold shock protein [Escherichia coli]
 gi|209777222|gb|ACI86923.1| cold shock protein [Escherichia coli]
 gi|209777224|gb|ACI86924.1| cold shock protein [Escherichia coli]
 gi|209777226|gb|ACI86925.1| cold shock protein [Escherichia coli]
 gi|209911141|dbj|BAG76215.1| cold shock-like protein [Escherichia coli SE11]
 gi|215263737|emb|CAS08072.1| DNA-binding transcriptional repressor [Escherichia coli O127:H6
          str. E2348/69]
 gi|217320761|gb|EEC29185.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14588]
 gi|218350796|emb|CAU96488.1| DNA-binding transcriptional repressor [Escherichia coli 55989]
 gi|218357340|emb|CAQ89977.1| DNA-binding transcriptional repressor [Escherichia fergusonii
          ATCC 35469]
 gi|218359934|emb|CAQ97477.1| DNA-binding transcriptional repressor [Escherichia coli IAI1]
 gi|218364332|emb|CAR02005.1| DNA-binding transcriptional repressor [Escherichia coli S88]
 gi|218368982|emb|CAR16736.1| DNA-binding transcriptional repressor [Escherichia coli IAI39]
 gi|218426011|emb|CAR06828.1| DNA-binding transcriptional repressor [Escherichia coli ED1a]
 gi|218431054|emb|CAR11930.1| DNA-binding transcriptional repressor [Escherichia coli UMN026]
 gi|222032384|emb|CAP75123.1| Cold shock-like protein cspE [Escherichia coli LF82]
 gi|227838483|gb|EEJ48949.1| cold shock protein CspE [Escherichia coli 83972]
 gi|238860974|gb|ACR62972.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
 gi|242376400|emb|CAQ31099.1| transcription antiterminator and regulator of RNA stability
          [Escherichia coli BL21(DE3)]
 gi|253325434|gb|ACT30036.1| cold-shock DNA-binding domain protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253972607|gb|ACT38278.1| cold shock protein E [Escherichia coli B str. REL606]
 gi|253976801|gb|ACT42471.1| cold shock protein E [Escherichia coli BL21(DE3)]
 gi|254591190|gb|ACT70551.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7
          str. TW14359]
 gi|257752525|dbj|BAI24027.1| DNA-binding transcriptional repressor CspE [Escherichia coli
          O26:H11 str. 11368]
 gi|257757997|dbj|BAI29494.1| DNA-binding transcriptional repressor CspE [Escherichia coli
          O103:H2 str. 12009]
 gi|257763128|dbj|BAI34623.1| DNA-binding transcriptional repressor CspE [Escherichia coli
          O111:H- str. 11128]
 gi|260450208|gb|ACX40630.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|281177773|dbj|BAI54103.1| cold shock-like protein [Escherichia coli SE15]
 gi|284920424|emb|CBG33485.1| cold shock-like protein [Escherichia coli 042]
 gi|290761448|gb|ADD55409.1| hypothetical protein G2583_0787 [Escherichia coli O55:H7 str.
          CB9615]
 gi|291325263|gb|EFE64678.1| cold shock protein [Escherichia coli B088]
 gi|291428472|gb|EFF01497.1| cold shock-like protein cspE [Escherichia coli FVEC1412]
 gi|291433978|gb|EFF06951.1| cold shock-like protein cspE [Escherichia coli B185]
 gi|291471927|gb|EFF14410.1| cold shock protein cspE [Escherichia coli B354]
 gi|294494060|gb|ADE92816.1| cold shock protein CspE [Escherichia coli IHE3034]
 gi|298279360|gb|EFI20868.1| cold shock protein CspG [Escherichia coli FVEC1302]
 gi|299878114|gb|EFI86325.1| cold shock protein CspE [Escherichia coli MS 196-1]
 gi|300298413|gb|EFJ54798.1| cold shock protein CspE [Escherichia coli MS 185-1]
 gi|300304394|gb|EFJ58914.1| cold shock protein CspE [Escherichia coli MS 200-1]
 gi|300314212|gb|EFJ63996.1| cold shock protein CspE [Escherichia coli MS 175-1]
 gi|300355435|gb|EFJ71305.1| cold shock protein CspE [Escherichia coli MS 198-1]
 gi|300396117|gb|EFJ79655.1| cold shock protein CspE [Escherichia coli MS 69-1]
 gi|300400487|gb|EFJ84025.1| cold shock protein CspE [Escherichia coli MS 84-1]
 gi|300407161|gb|EFJ90699.1| cold shock protein CspE [Escherichia coli MS 45-1]
 gi|300412430|gb|EFJ95740.1| cold shock protein CspE [Escherichia coli MS 115-1]
 gi|300416766|gb|EFK00077.1| cold shock protein CspE [Escherichia coli MS 182-1]
 gi|300449605|gb|EFK13225.1| cold shock protein CspE [Escherichia coli MS 116-1]
 gi|300455497|gb|EFK18990.1| cold shock protein CspE [Escherichia coli MS 21-1]
 gi|300460695|gb|EFK24188.1| cold shock protein CspE [Escherichia coli MS 187-1]
 gi|300524411|gb|EFK45480.1| cold shock protein CspE [Escherichia coli MS 119-7]
 gi|300529556|gb|EFK50618.1| cold shock protein CspE [Escherichia coli MS 107-1]
 gi|300842654|gb|EFK70414.1| cold shock protein CspE [Escherichia coli MS 124-1]
 gi|300844528|gb|EFK72288.1| cold shock protein CspE [Escherichia coli MS 78-1]
 gi|301077663|gb|EFK92469.1| cold shock protein CspE [Escherichia coli MS 146-1]
 gi|305853707|gb|EFM54146.1| cold shock protein CspE [Escherichia coli NC101]
 gi|306907362|gb|EFN37867.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|307552494|gb|ADN45269.1| cold shock-like protein CspE [Escherichia coli ABU 83972]
 gi|307627938|gb|ADN72242.1| cold shock protein CspE [Escherichia coli UM146]
 gi|308120884|gb|EFO58146.1| cold shock protein CspE [Escherichia coli MS 145-7]
 gi|308926056|gb|EFP71534.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
 gi|309700862|emb|CBJ00159.1| cold shock-like protein [Escherichia coli ETEC H10407]
 gi|310337353|gb|EFQ02491.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|312290161|gb|EFR18044.1| cold shock-like protein cspI [Escherichia coli 2362-75]
 gi|312945171|gb|ADR25998.1| cold shock protein CspE [Escherichia coli O83:H1 str. NRG 857C]
 gi|313649731|gb|EFS14155.1| cold shock-like protein cspI [Shigella flexneri 2a str. 2457T]
 gi|315059879|gb|ADT74206.1| DNA-binding transcriptional repressor [Escherichia coli W]
 gi|315135289|dbj|BAJ42448.1| cold shock protein CspE [Escherichia coli DH1]
 gi|315255074|gb|EFU35042.1| cold shock protein CspE [Escherichia coli MS 85-1]
 gi|315287050|gb|EFU46465.1| cold shock protein CspE [Escherichia coli MS 110-3]
 gi|315292127|gb|EFU51479.1| cold shock protein CspE [Escherichia coli MS 153-1]
 gi|315299117|gb|EFU58371.1| cold shock protein CspE [Escherichia coli MS 16-3]
 gi|315616459|gb|EFU97076.1| cold shock-like protein cspI [Escherichia coli 3431]
 gi|320175134|gb|EFW50246.1| Cold shock protein CspE [Shigella dysenteriae CDC 74-1112]
 gi|320178413|gb|EFW53381.1| Cold shock protein CspE [Shigella boydii ATCC 9905]
 gi|320185402|gb|EFW60172.1| Cold shock protein CspE [Shigella flexneri CDC 796-83]
 gi|320193030|gb|EFW67670.1| Cold shock protein CspE [Escherichia coli O157:H7 str. EC1212]
 gi|320194194|gb|EFW68826.1| Cold shock protein CspE [Escherichia coli WV_060327]
 gi|320198250|gb|EFW72854.1| Cold shock protein CspE [Escherichia coli EC4100B]
 gi|320638073|gb|EFX07837.1| cold shock protein CspE [Escherichia coli O157:H7 str. G5101]
 gi|320643479|gb|EFX12649.1| cold shock protein CspE [Escherichia coli O157:H- str. 493-89]
 gi|320648814|gb|EFX17441.1| cold shock protein CspE [Escherichia coli O157:H- str. H 2687]
 gi|320654400|gb|EFX22447.1| cold shock protein CspE [Escherichia coli O55:H7 str. 3256-97 TW
          07815]
 gi|320660081|gb|EFX27611.1| cold shock protein CspE [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664878|gb|EFX32013.1| cold shock protein CspE [Escherichia coli O157:H7 str. LSU-61]
 gi|323153655|gb|EFZ39903.1| cold shock-like protein cspI [Escherichia coli EPECa14]
 gi|323158923|gb|EFZ44934.1| cold shock-like protein cspI [Escherichia coli E128010]
 gi|323164078|gb|EFZ49886.1| cold shock-like protein cspI [Shigella sonnei 53G]
 gi|323170751|gb|EFZ56401.1| cold shock-like protein cspI [Escherichia coli LT-68]
 gi|323179900|gb|EFZ65457.1| cold shock-like protein cspI [Escherichia coli 1180]
 gi|323184883|gb|EFZ70251.1| cold shock-like protein cspI [Escherichia coli 1357]
 gi|323191262|gb|EFZ76526.1| cold shock-like protein cspI [Escherichia coli RN587/1]
 gi|323379557|gb|ADX51825.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323938386|gb|EGB34640.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1520]
 gi|323943038|gb|EGB39197.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323945099|gb|EGB41161.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323952798|gb|EGB48666.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H252]
 gi|323958382|gb|EGB54088.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H263]
 gi|323963193|gb|EGB58761.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H489]
 gi|323967571|gb|EGB62987.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli M863]
 gi|323972078|gb|EGB67292.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|323976394|gb|EGB71484.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TW10509]
 gi|324006340|gb|EGB75559.1| cold shock protein CspE [Escherichia coli MS 57-2]
 gi|324010499|gb|EGB79718.1| cold shock protein CspE [Escherichia coli MS 60-1]
 gi|324016114|gb|EGB85333.1| cold shock protein CspE [Escherichia coli MS 117-3]
 gi|324114747|gb|EGC08715.1| cold-shock DNA-binding domain-containing protein [Escherichia
          fergusonii B253]
 gi|324116698|gb|EGC10613.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1167]
 gi|325498195|gb|EGC96054.1| cold shock protein CspE [Escherichia fergusonii ECD227]
 gi|326341375|gb|EGD65167.1| Cold shock protein CspE [Escherichia coli O157:H7 str. 1044]
 gi|326345847|gb|EGD69586.1| Cold shock protein CspE [Escherichia coli O157:H7 str. 1125]
 gi|327254308|gb|EGE65930.1| cold shock-like protein cspI [Escherichia coli STEC_7v]
 gi|330910385|gb|EGH38895.1| cold shock protein CspE [Escherichia coli AA86]
 gi|331054899|gb|EGI26908.1| cold shock protein [Escherichia coli TA206]
 gi|331060410|gb|EGI32374.1| cold shock protein [Escherichia coli TA143]
 gi|331066200|gb|EGI38084.1| cold shock protein [Escherichia coli TA271]
 gi|331080724|gb|EGI51898.1| cold shock protein [Escherichia coli H299]
 gi|332094296|gb|EGI99347.1| cold shock-like protein cspI [Shigella boydii 5216-82]
 gi|332096862|gb|EGJ01852.1| cold shock-like protein cspI [Shigella dysenteriae 155-74]
 gi|332341970|gb|AEE55304.1| cold shock-like protein CspI [Escherichia coli UMNK88]
 gi|332761006|gb|EGJ91294.1| cold shock-like protein cspI [Shigella flexneri 4343-70]
 gi|332761185|gb|EGJ91471.1| cold shock-like protein cspI [Shigella flexneri 2747-71]
 gi|332763377|gb|EGJ93617.1| cold shock-like protein cspI [Shigella flexneri K-671]
 gi|332768274|gb|EGJ98459.1| transcription antiterminator and regulator of RNA stability
          [Shigella flexneri 2930-71]
 gi|333007465|gb|EGK26945.1| cold shock-like protein cspI [Shigella flexneri VA-6]
 gi|333008038|gb|EGK27514.1| cold shock-like protein cspI [Shigella flexneri K-218]
 gi|333010035|gb|EGK29470.1| cold shock-like protein cspI [Shigella flexneri K-272]
 gi|333020868|gb|EGK40128.1| cold shock-like protein cspI [Shigella flexneri K-227]
 gi|333021570|gb|EGK40820.1| cold shock-like protein cspI [Shigella flexneri K-304]
          Length = 69

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++   N A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVIAL 69


>gi|83589095|ref|YP_429104.1| cold-shock DNA-binding protein family protein [Moorella
          thermoacetica ATCC 39073]
 gi|83572009|gb|ABC18561.1| cold-shock DNA-binding protein family [Moorella thermoacetica
          ATCC 39073]
          Length = 65

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+NP+KGYGFI  E     G DVF+H SA+   G   L EGQ V +D V+    G
Sbjct: 2  QGKVKWFNPEKGYGFIERE----DGKDVFVHFSAIQEEGFKTLAEGQEVEFDIVEG-PRG 56

Query: 64 KYSAENLK 71
            +A  +K
Sbjct: 57 PQAANVIK 64


>gi|239980196|ref|ZP_04702720.1| cold shock protein [Streptomyces albus J1074]
 gi|291452050|ref|ZP_06591440.1| cold shock protein [Streptomyces albus J1074]
 gi|291354999|gb|EFE81901.1| cold shock protein [Streptomyces albus J1074]
          Length = 67

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q VT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVTFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENVT 65


>gi|225574379|ref|ZP_03782989.1| hypothetical protein RUMHYD_02448 [Blautia hydrogenotrophica DSM
          10507]
 gi|225038381|gb|EEG48627.1| hypothetical protein RUMHYD_02448 [Blautia hydrogenotrophica DSM
          10507]
          Length = 66

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFIT     E G DVF+H SA+   G  +L EGQ V+YD  +  A
Sbjct: 1  MNKGTVKWFNAEKGYGFIT----GEDGADVFVHFSAINGEGFKSLEEGQSVSYDLTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGMQAANVTKL 66


>gi|283784399|ref|YP_003364264.1| cold shock-like protein [Citrobacter rodentium ICC168]
 gi|62126861|gb|AAX64564.1| RNA chaperone, negative regulator of cspA transcription
          [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|282947853|emb|CBG87413.1| cold shock-like protein [Citrobacter rodentium ICC168]
          Length = 79

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++   N A G
Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 70

Query: 64 KYSAENLKL 72
            +A    L
Sbjct: 71 PSAANVTAL 79


>gi|300790362|ref|YP_003770653.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
 gi|299799876|gb|ADJ50251.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
          Length = 68

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI     +  G DVF+H SA+ S G   L EG  V ++ VQ+  
Sbjct: 1  MAVGTVKWFNSEKGYGFIE----STEGPDVFVHYSAIQSEGFRTLDEGDRVEFE-VQSGR 55

Query: 62 NGKYSAENLKLV 73
          +G+  A +++ V
Sbjct: 56 DGRSQAADVRKV 67


>gi|225023806|ref|ZP_03712998.1| hypothetical protein EIKCOROL_00671 [Eikenella corrodens ATCC
          23834]
 gi|224943405|gb|EEG24614.1| hypothetical protein EIKCOROL_00671 [Eikenella corrodens ATCC
          23834]
          Length = 67

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++      
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMNGFKTLKEGQKVSFEVTTGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|227544424|ref|ZP_03974473.1| cold-shock protein [Lactobacillus reuteri CF48-3A]
 gi|300908271|ref|ZP_07125736.1| cold-shock domain family protein [Lactobacillus reuteri SD2112]
 gi|77745315|gb|ABB02558.1| putative cold shock protein [Lactobacillus reuteri]
 gi|227185587|gb|EEI65658.1| cold-shock protein [Lactobacillus reuteri CF48-3A]
 gi|300894518|gb|EFK87875.1| cold-shock domain family protein [Lactobacillus reuteri SD2112]
          Length = 66

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKGYGFIT E    SGDDVF+H SA+   G  +L+EGQ VT++  + + 
Sbjct: 1  MEQGTVKWFNDDKGYGFITRE----SGDDVFVHFSAIQGDGFKSLSEGQHVTFEVEEGE- 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGLQAANVVK 65


>gi|168185844|ref|ZP_02620479.1| conserved domain protein [Clostridium botulinum C str. Eklund]
 gi|253681085|ref|ZP_04861888.1| conserved domain protein [Clostridium botulinum D str. 1873]
 gi|331270523|ref|YP_004397015.1| major cold shock protein [Clostridium botulinum BKT015925]
 gi|169296006|gb|EDS78139.1| conserved domain protein [Clostridium botulinum C str. Eklund]
 gi|253562934|gb|EES92380.1| conserved domain protein [Clostridium botulinum D str. 1873]
 gi|329127073|gb|AEB77018.1| major cold shock protein [Clostridium botulinum BKT015925]
          Length = 66

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI+ EG     DDVF+H SA+   G   L EGQ V ++  +  A
Sbjct: 1  MKTGIVKWFNAEKGFGFISVEGE----DDVFVHFSAIQGDGFKTLEEGQKVEFEVTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|163851320|ref|YP_001639363.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|163662925|gb|ABY30292.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
          Length = 69

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   +   DVF+H SAV  AG+ NL EGQ V+Y+   +  
Sbjct: 1  MSIGTVKWFNDTKGFGFIQPE---DGSKDVFVHISAVERAGMRNLIEGQKVSYEMETDRR 57

Query: 62 NGKYSAENLK 71
          +GK SA +L+
Sbjct: 58 SGKQSAGSLQ 67


>gi|281490768|ref|YP_003352748.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|281374537|gb|ADA64058.1| Cold-shock protein [Lactococcus lactis subsp. lactis KF147]
          Length = 91

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KG+GFIT    +E G D+F H SA+ S G  +L EGQ V +D  +  
Sbjct: 25 IMANGTVKWFNATKGFGFIT----SEDGQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQ 80

Query: 61 ANGKYSAENLK 71
                A N+ 
Sbjct: 81 RG--PQAVNIT 89


>gi|260425753|ref|ZP_05779733.1| conserved domain protein [Citreicella sp. SE45]
 gi|260423693|gb|EEX16943.1| conserved domain protein [Citreicella sp. SE45]
          Length = 68

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G DVF+H SA+  AGL  L + Q VTYD V++  
Sbjct: 1  MANGTVKWFNSTKGFGFIEPE---NGGRDVFVHISAIERAGLTGLADAQKVTYD-VESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESAINLAL 67


>gi|260433151|ref|ZP_05787122.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416979|gb|EEX10238.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 68

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   E G DVF+H SAV  +GL  L + Q V+Y+  ++  
Sbjct: 1  MPTGTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVSYEL-EDGR 56

Query: 62 NGKYSAENLKLV 73
          +G+  A +LK +
Sbjct: 57 DGRQMAADLKPM 68


>gi|332295652|ref|YP_004437575.1| cold-shock DNA-binding domain protein [Thermodesulfobium
          narugense DSM 14796]
 gi|332178755|gb|AEE14444.1| cold-shock DNA-binding domain protein [Thermodesulfobium
          narugense DSM 14796]
          Length = 70

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFI+   +   G+DVF+H SA+ S G  +L EGQ VT+D  ++  
Sbjct: 1  MNKGTVKWFNAEKGYGFIS---NANGGEDVFVHFSAIVSDGFKSLNEGQQVTFDIEKDPK 57

Query: 62 N-GKYSAENLKLV 73
          N  K  A N+K +
Sbjct: 58 NSKKLRAVNVKAL 70


>gi|310641348|ref|YP_003946106.1| cold shock-like protein cspb [Paenibacillus polymyxa SC2]
 gi|309246298|gb|ADO55865.1| Cold shock-like protein cspB [Paenibacillus polymyxa SC2]
          Length = 65

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI  E     G+DVF+H SA+   G   L EGQ V ++  + +  G
Sbjct: 2  KGTVKWFNAEKGYGFIQVE----GGEDVFVHFSAIQGDGFKTLEEGQEVEFEITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|115526308|ref|YP_783219.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisA53]
 gi|115520255|gb|ABJ08239.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisA53]
          Length = 66

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP KGYGFI P   +  G DVF+H SAV+ AGL  L EGQ + ++ V N  
Sbjct: 1  MASGTVKWFNPTKGYGFIQP---SNGGKDVFVHISAVSRAGLSTLNEGQSLEFEEVAN-- 55

Query: 62 NGKYSAENLKL 72
           G+ SAENL++
Sbjct: 56 RGRTSAENLRV 66


>gi|77464163|ref|YP_353667.1| cold-shock DNA-binding protein family protein [Rhodobacter
          sphaeroides 2.4.1]
 gi|126463006|ref|YP_001044120.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|146276547|ref|YP_001166706.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|221640032|ref|YP_002526294.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          KD131]
 gi|332559039|ref|ZP_08413361.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          WS8N]
 gi|77388581|gb|ABA79766.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          2.4.1]
 gi|126104670|gb|ABN77348.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17029]
 gi|145554788|gb|ABP69401.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17025]
 gi|221160813|gb|ACM01793.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          KD131]
 gi|332276751|gb|EGJ22066.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          WS8N]
          Length = 68

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFI PEG      DVF+H +A+  AG+  L +GQ VT+D  ++  
Sbjct: 1  MAKGTVKWFNATKGYGFIAPEG---GKKDVFVHITALERAGIRALNDGQAVTFDI-ESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N+ +
Sbjct: 57 DGRESATNISI 67


>gi|16974809|pdb|1I5F|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
 gi|16974810|pdb|1I5F|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
          Length = 66

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI  E     G DVF+H +A+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQEGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|27378265|ref|NP_769794.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27351412|dbj|BAC48419.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 69

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G+DVF+H SAV  AGL  L EGQ V ++   +  
Sbjct: 1  MPTGTVKWFNGQKGFGFIQPD---DGGNDVFVHVSAVERAGLSGLAEGQKVNFEAKTDKM 57

Query: 62 NGKYSAENLKL 72
           GK SAENL L
Sbjct: 58 RGKVSAENLSL 68


>gi|332974564|gb|EGK11484.1| cold shock transcription regulator protein [Kingella kingae ATCC
          23330]
          Length = 67

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D      
Sbjct: 1  MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFDVT-TGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|253990644|ref|YP_003042000.1| cold shock protein CspE [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253782094|emb|CAQ85258.1| cold shock-like protein cspe [Photorhabdus asymbiotica]
          Length = 79

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   + A G
Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQKVEFEIT-DGAKG 70

Query: 64 KYSAENLKL 72
            +   + +
Sbjct: 71 PSAVNVVAI 79


>gi|70726510|ref|YP_253424.1| major cold shock protein CspA [Staphylococcus haemolyticus
          JCSC1435]
 gi|223043278|ref|ZP_03613325.1| conserved domain protein [Staphylococcus capitis SK14]
 gi|239637089|ref|ZP_04678083.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|289550810|ref|YP_003471714.1| Cold shock protein CspA [Staphylococcus lugdunensis HKU09-01]
 gi|314933579|ref|ZP_07840944.1| conserved domain protein [Staphylococcus caprae C87]
 gi|118572258|sp|Q4L6A7|CSPA_STAHJ RecName: Full=Cold shock protein CspA
 gi|68447234|dbj|BAE04818.1| major cold shock protein CspA [Staphylococcus haemolyticus
          JCSC1435]
 gi|222443489|gb|EEE49587.1| conserved domain protein [Staphylococcus capitis SK14]
 gi|239597439|gb|EEQ79942.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|289180342|gb|ADC87587.1| Cold shock protein CspA [Staphylococcus lugdunensis HKU09-01]
 gi|313653729|gb|EFS17486.1| conserved domain protein [Staphylococcus caprae C87]
 gi|330684708|gb|EGG96406.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121]
          Length = 66

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQSVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|302538788|ref|ZP_07291130.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302447683|gb|EFL19499.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 67

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H SA+ S G   L EGQ VT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSTGYRELQEGQAVTFDVTQGQK 57

Query: 62 NGKYSAENLKL 72
               AEN+ L
Sbjct: 58 G--PQAENINL 66


>gi|52079019|ref|YP_077810.1| cold-shock protein [Bacillus licheniformis ATCC 14580]
 gi|52784391|ref|YP_090220.1| hypothetical protein BLi00578 [Bacillus licheniformis ATCC 14580]
 gi|319648678|ref|ZP_08002889.1| cold shock-like protein cspLA [Bacillus sp. BT1B_CT2]
 gi|52002230|gb|AAU22172.1| cold-shock protein [Bacillus licheniformis ATCC 14580]
 gi|52346893|gb|AAU39527.1| CspC [Bacillus licheniformis ATCC 14580]
 gi|317389097|gb|EFV69913.1| cold shock-like protein cspLA [Bacillus sp. BT1B_CT2]
          Length = 67

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E    +GDDVF+H SA+ S G  +L EGQ VT+D  Q   
Sbjct: 1  MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQG-P 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGAQAANVQK 65


>gi|86157415|ref|YP_464200.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|197121458|ref|YP_002133409.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|220916162|ref|YP_002491466.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85773926|gb|ABC80763.1| cold-shock DNA-binding protein family [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|196171307|gb|ACG72280.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|219954016|gb|ACL64400.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 67

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +G    GDDVF H +A+ + G   L EGQ V +D  +   
Sbjct: 1  MATGTVKWFNDAKGFGFITQDG---GGDDVFCHHTAIQADGFRTLAEGQKVEFDVTRGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--LQAANVRAI 67


>gi|332715811|ref|YP_004443277.1| cold shock protein cspA [Agrobacterium sp. H13-3]
 gi|325062496|gb|ADY66186.1| cold shock protein cspA [Agrobacterium sp. H13-3]
          Length = 74

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + +D  +++
Sbjct: 5  IMTTGTVKWFNSTKGFGFIQPD---NGGTDAFVHISAVERAGMRELVEGQKIGFDLERDN 61

Query: 61 ANGKYSAENLK 71
           +GK SA NL+
Sbjct: 62 KSGKMSACNLQ 72


>gi|304385436|ref|ZP_07367781.1| cold shock protein CspA [Pediococcus acidilactici DSM 20284]
 gi|304328643|gb|EFL95864.1| cold shock protein CspA [Pediococcus acidilactici DSM 20284]
          Length = 69

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ +G++KW+N DKG+GFIT E     G DVF+H SA+ S G   L EGQ V++D  ++D
Sbjct: 3  IMEQGTVKWFNADKGFGFITRE----DGSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESD 58

Query: 61 ANGKYSAENLK 71
                A N++
Sbjct: 59 RG--PQAVNVE 67


>gi|224476532|ref|YP_002634138.1| putative cold shock protein [Staphylococcus carnosus subsp.
          carnosus TM300]
 gi|222421139|emb|CAL27953.1| putative cold shock protein [Staphylococcus carnosus subsp.
          carnosus TM300]
          Length = 66

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQAVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|23098034|ref|NP_691500.1| cold shock protein [Oceanobacillus iheyensis HTE831]
 gi|22776259|dbj|BAC12535.1| cold shock protein [Oceanobacillus iheyensis HTE831]
          Length = 65

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFI  E     GDDVF+H SA+ + G   L EGQ V ++ V+ +  G
Sbjct: 2  TGKVKWFNAEKGFGFIERE----DGDDVFVHFSAIQADGFKTLEEGQDVEFEIVEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  ++L
Sbjct: 57 PQAANVVRL 65


>gi|82703364|ref|YP_412930.1| cold-shock DNA-binding domain-containing protein [Nitrosospira
          multiformis ATCC 25196]
 gi|82411429|gb|ABB75538.1| cold-shock DNA-binding protein family [Nitrosospira multiformis
          ATCC 25196]
          Length = 67

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  +D+F H SA+  +G   L EGQ VT++  Q   
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMSGFKTLKEGQKVTFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|30265215|ref|NP_847592.1| cold shock protein CspC [Bacillus anthracis str. Ames]
 gi|47778401|ref|YP_022086.2| cold shock protein CspC [Bacillus anthracis str. 'Ames Ancestor']
 gi|196039541|ref|ZP_03106846.1| cold shock protein CspC [Bacillus cereus NVH0597-99]
 gi|218232486|ref|YP_002369965.1| cold shock protein CspC [Bacillus cereus B4264]
 gi|218900310|ref|YP_002448721.1| cold shock protein CspC [Bacillus cereus G9842]
 gi|227817950|ref|YP_002817959.1| cold shock protein CspC [Bacillus anthracis str. CDC 684]
 gi|228911024|ref|ZP_04074832.1| hypothetical protein bthur0013_51650 [Bacillus thuringiensis IBL
          200]
 gi|228917794|ref|ZP_04081333.1| hypothetical protein bthur0012_49970 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228955435|ref|ZP_04117440.1| hypothetical protein bthur0006_47910 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228968291|ref|ZP_04129289.1| hypothetical protein bthur0004_50700 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|229050851|ref|ZP_04194403.1| hypothetical protein bcere0027_48060 [Bacillus cereus AH676]
 gi|229063847|ref|ZP_04200151.1| hypothetical protein bcere0026_49080 [Bacillus cereus AH603]
 gi|229072644|ref|ZP_04205846.1| hypothetical protein bcere0025_48050 [Bacillus cereus F65185]
 gi|229112598|ref|ZP_04242135.1| hypothetical protein bcere0018_48380 [Bacillus cereus Rock1-15]
 gi|229158754|ref|ZP_04286812.1| hypothetical protein bcere0010_49270 [Bacillus cereus ATCC 4342]
 gi|229169899|ref|ZP_04297595.1| hypothetical protein bcere0007_48390 [Bacillus cereus AH621]
 gi|229181451|ref|ZP_04308779.1| hypothetical protein bcere0005_47920 [Bacillus cereus 172560W]
 gi|254724384|ref|ZP_05186168.1| cold shock protein CspC [Bacillus anthracis str. A1055]
 gi|254735591|ref|ZP_05193298.1| cold shock protein CspC [Bacillus anthracis str. Western North
          America USA6153]
 gi|49040749|sp|P62169|CSPC_BACAN RecName: Full=Cold shock-like protein CspC
 gi|49061093|sp|P62170|CSPC_BACCE RecName: Full=Cold shock-like protein CspC
 gi|49061097|sp|P62171|CSPC_BACCR RecName: Full=Cold shock-like protein CspC
 gi|1405474|emb|CAA63609.1| CspC protein [Bacillus cereus]
 gi|30259892|gb|AAP29078.1| cold shock protein CspC [Bacillus anthracis str. Ames]
 gi|47552106|gb|AAT34561.2| cold shock protein CspC [Bacillus anthracis str. 'Ames Ancestor']
 gi|196029701|gb|EDX68303.1| cold shock protein CspC [Bacillus cereus NVH0597-99]
 gi|218160443|gb|ACK60435.1| cold shock protein CspC [Bacillus cereus B4264]
 gi|218544035|gb|ACK96429.1| cold shock protein CspC [Bacillus cereus G9842]
 gi|227003474|gb|ACP13217.1| cold shock protein CspC [Bacillus anthracis str. CDC 684]
 gi|228602026|gb|EEK59519.1| hypothetical protein bcere0005_47920 [Bacillus cereus 172560W]
 gi|228613613|gb|EEK70742.1| hypothetical protein bcere0007_48390 [Bacillus cereus AH621]
 gi|228624738|gb|EEK81507.1| hypothetical protein bcere0010_49270 [Bacillus cereus ATCC 4342]
 gi|228670978|gb|EEL26285.1| hypothetical protein bcere0018_48380 [Bacillus cereus Rock1-15]
 gi|228710620|gb|EEL62593.1| hypothetical protein bcere0025_48050 [Bacillus cereus F65185]
 gi|228716484|gb|EEL68188.1| hypothetical protein bcere0026_49080 [Bacillus cereus AH603]
 gi|228722507|gb|EEL73900.1| hypothetical protein bcere0027_48060 [Bacillus cereus AH676]
 gi|228791464|gb|EEM39068.1| hypothetical protein bthur0004_50700 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228804227|gb|EEM50841.1| hypothetical protein bthur0006_47910 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228841843|gb|EEM86951.1| hypothetical protein bthur0012_49970 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228848679|gb|EEM93525.1| hypothetical protein bthur0013_51650 [Bacillus thuringiensis IBL
          200]
          Length = 65

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ V +D V + A G
Sbjct: 2  QGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|325168917|ref|YP_004280707.1| cold-shock DNA-binding domain protein [Agrobacterium sp. H13-3]
 gi|325064640|gb|ADY68329.1| cold-shock DNA-binding domain protein [Agrobacterium sp. H13-3]
          Length = 69

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + ++  +++ 
Sbjct: 1  MTTGTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFELERDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKMSATNLQ 67


>gi|256831549|ref|YP_003160276.1| cold-shock DNA-binding domain-containing protein [Jonesia
          denitrificans DSM 20603]
 gi|256685080|gb|ACV07973.1| cold-shock DNA-binding domain protein [Jonesia denitrificans DSM
          20603]
          Length = 67

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI PE   +   DVF H SA+ + G   L E Q V +D  Q   
Sbjct: 1  MAFGTVKWFNAEKGFGFIAPE---DGSADVFAHYSAIQTNGYRTLEENQRVEFDVAQGPK 57

Query: 62 NGKYSAENLK 71
               AEN++
Sbjct: 58 G--LQAENIR 65


>gi|296115123|ref|ZP_06833764.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295978224|gb|EFG84961.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 67

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+   + G DVF+H +AV +AGL  L E Q V+YD      
Sbjct: 1  MATGKVKWFNATKGFGFIMPD---DGGKDVFVHITAVQAAGLRGLDENQAVSYDITME-- 55

Query: 62 NGKYSAENLKLV 73
           GK +A NLK +
Sbjct: 56 RGKAAASNLKPL 67


>gi|237732132|ref|ZP_04562613.1| stationary phase/starvation inducible regulatory protein CspD
          [Citrobacter sp. 30_2]
 gi|283832491|ref|ZP_06352232.1| cold shock domain protein CspD [Citrobacter youngae ATCC 29220]
 gi|226907671|gb|EEH93589.1| stationary phase/starvation inducible regulatory protein CspD
          [Citrobacter sp. 30_2]
 gi|291072151|gb|EFE10260.1| cold shock domain protein CspD [Citrobacter youngae ATCC 29220]
          Length = 74

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQG-P 56

Query: 62 NGKYSAENLKLVPKSS 77
           G +++  + ++   +
Sbjct: 57 KGNHASVIVPVIEAEA 72


>gi|92118857|ref|YP_578586.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91801751|gb|ABE64126.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 66

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P G    G DVF+H SAV  AGL  L EGQ V ++ V N  
Sbjct: 1  MAKGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLSTLNEGQTVEFEEVAN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66


>gi|154245503|ref|YP_001416461.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
          autotrophicus Py2]
 gi|154159588|gb|ABS66804.1| putative cold-shock DNA-binding domain protein [Xanthobacter
          autotrophicus Py2]
          Length = 70

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G D F+H SAV  AG+ +L EGQ V ++ V +  
Sbjct: 1  MAEGTVKWFNAQKGFGFITPDS---GGSDAFVHISAVERAGMSDLREGQKVAFELVTDRK 57

Query: 62 NGKYSAENLK 71
          +GK SA+ LK
Sbjct: 58 SGKLSADQLK 67


>gi|313671995|ref|YP_004050106.1| cold-shock DNA-binding domain protein [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312938751|gb|ADR17943.1| cold-shock DNA-binding domain protein [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 67

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M + G++KW+N  KGYGFIT    + +G+DVF+H SA+   G  +L EG  V +D V+  
Sbjct: 1  MSNTGTVKWFNDTKGYGFIT----SSTGEDVFVHYSAITMDGFKSLKEGDKVNFDIVKG- 55

Query: 61 ANGKYSAENLK 71
            G  +A   K
Sbjct: 56 PKGPQAANVTK 66


>gi|197106095|ref|YP_002131472.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
 gi|196479515|gb|ACG79043.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
          Length = 69

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G+DVF+H SAV  AG+ NL+EGQ V+++  ++  
Sbjct: 1  MTIGTVKWFNGQKGFGFIQPD---DGGNDVFVHISAVERAGMSNLSEGQKVSFELQKDSR 57

Query: 62 NGKYSAENLK 71
          +GK SAE L+
Sbjct: 58 SGKMSAEQLQ 67


>gi|167647171|ref|YP_001684834.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
          K31]
 gi|167349601|gb|ABZ72336.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
          Length = 67

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L EGQ V++D  +   
Sbjct: 1  MATGVVKWFNGTKGFGFIQPD---DGGKDVFVHISAVERAGLRGLDEGQKVSFDTAEE-- 55

Query: 62 NGKYSAENLKLV 73
           GK +A NLK +
Sbjct: 56 RGKIAANNLKPL 67


>gi|284990904|ref|YP_003409458.1| cold-shock DNA-binding domain-containing protein
          [Geodermatophilus obscurus DSM 43160]
 gi|284064149|gb|ADB75087.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
          DSM 43160]
          Length = 67

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +G    G DVF H SA++ +G  +L E Q V +D  Q   
Sbjct: 1  MTQGTVKWFNAEKGFGFIEQDG---GGPDVFCHFSAISGSGYRSLDEAQRVEFDVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENVRAI 67


>gi|154253600|ref|YP_001414424.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
          lavamentivorans DS-1]
 gi|154157550|gb|ABS64767.1| putative cold-shock DNA-binding domain protein [Parvibaculum
          lavamentivorans DS-1]
          Length = 69

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G      DVF+H SAV  AG+ +L EGQ + YD   +  
Sbjct: 1  MANGTVKWFNSQKGFGFIQPDGGD---KDVFVHISAVERAGMSSLNEGQKIGYDLETDQR 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKVSAANLR 67


>gi|110678559|ref|YP_681566.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
 gi|109454675|gb|ABG30880.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
          Length = 68

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G      DVF+H SAV  AGL  L + Q VT+D  ++  
Sbjct: 1  MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLADNQKVTFDI-EDGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRQSATNLAL 67


>gi|85860247|ref|YP_462449.1| cold shock protein [Syntrophus aciditrophicus SB]
 gi|85723338|gb|ABC78281.1| cold shock protein [Syntrophus aciditrophicus SB]
          Length = 67

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G++KW+N  KG+GFI  +    SG+DVF+H SA+   G   L E + V++D VQ  
Sbjct: 1  MMPEGTVKWFNDSKGFGFIAQD----SGNDVFVHYSAIQGTGFKTLAESERVSFDVVQGA 56

Query: 61 ANGKYSAENLKLV 73
               SAEN++ +
Sbjct: 57 KG--PSAENVRKL 67


>gi|325962509|ref|YP_004240415.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323468596|gb|ADX72281.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 67

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI+P+   +S  DVF H SA+ S G  +L E Q V++D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFISPD---DSSQDVFAHYSAINSNGFRSLEENQKVSFDTEQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--PQATNIQAL 67


>gi|319936790|ref|ZP_08011202.1| cold-shock DNA-binding domain-containing protein [Coprobacillus
          sp. 29_1]
 gi|319808058|gb|EFW04630.1| cold-shock DNA-binding domain-containing protein [Coprobacillus
          sp. 29_1]
          Length = 66

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFIT +     G D+F+H SA+A +G   L EGQ V+++  + D 
Sbjct: 1  MNTGKVKWFNSEKGFGFITVD----GGKDIFVHFSAIAGSGYKTLEEGQNVSFEITEGDR 56

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 57 G--PQASNVTVL 66


>gi|269792592|ref|YP_003317496.1| cold-shock DNA-binding domain-containing protein
          [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100227|gb|ACZ19214.1| cold-shock DNA-binding domain protein [Thermanaerovibrio
          acidaminovorans DSM 6589]
          Length = 83

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KGYGFIT     E G DVF+H SA+   G   L EGQ V+++ V+  + G
Sbjct: 20 NGVVKWFNATKGYGFIT----AEDGKDVFVHFSAIQQEGFKTLEEGQRVSFEVVEG-SKG 74

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 75 PQAANVEKL 83


>gi|206561070|ref|YP_002231835.1| cold shock-like protein [Burkholderia cenocepacia J2315]
 gi|198037112|emb|CAR53033.1| cold shock-like protein [Burkholderia cenocepacia J2315]
          Length = 67

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D VQ   
Sbjct: 1  MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAITMNGFKTLKEGQKVSFDVVQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 58 G--KQASNIQAV 67


>gi|229544252|ref|ZP_04433311.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
 gi|229325391|gb|EEN91067.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
          Length = 67

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI  E     GDDVF+H SA+   G   L EGQ V++D V+  +
Sbjct: 1  MEHGTVKWFNSEKGYGFIERE----GGDDVFVHFSAIQGEGYKTLEEGQKVSFD-VEEGS 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|92117563|ref|YP_577292.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91800457|gb|ABE62832.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 67

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G DVF+H SAV  AGL +L EG  V+Y+ V N  
Sbjct: 1  MATGTVKWFNATKGFGFIQPDS---GGKDVFVHISAVERAGLSSLNEGAKVSYEEVAN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENL++
Sbjct: 56 KGKTSAENLRV 66


>gi|83944376|ref|ZP_00956831.1| cold shock family protein [Sulfitobacter sp. EE-36]
 gi|83953418|ref|ZP_00962140.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
 gi|83842386|gb|EAP81554.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
 gi|83844920|gb|EAP82802.1| cold shock family protein [Sulfitobacter sp. EE-36]
          Length = 68

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+G    G D+F+H SAV  AGL  L + Q VT+D V+   
Sbjct: 1  MATGTVKWFNTTKGYGFIAPDG---GGKDIFVHISAVERAGLTGLADNQKVTFD-VEAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N+ L
Sbjct: 57 DGRESAANIAL 67


>gi|149928086|ref|ZP_01916333.1| Cold-shock DNA-binding domain protein [Limnobacter sp. MED105]
 gi|149823172|gb|EDM82409.1| Cold-shock DNA-binding domain protein [Limnobacter sp. MED105]
          Length = 73

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 5/76 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  D++F H SA+ ++G   L EGQ VT++ V +  
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---QGSDELFAHFSAIQASGFRTLKEGQKVTFEVV-DGP 56

Query: 62 NGKYSAENLKLVPKSS 77
           GK  A+N+ ++  +S
Sbjct: 57 KGKQ-AQNISVMDATS 71


>gi|89101277|ref|ZP_01174096.1| cold-shock protein [Bacillus sp. NRRL B-14911]
 gi|89084011|gb|EAR63193.1| cold-shock protein [Bacillus sp. NRRL B-14911]
          Length = 66

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     GDDVF+H +A+   G  +L EGQ V+++ V+ + 
Sbjct: 1  MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIQGDGFKSLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|37526673|ref|NP_930017.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
          TTO1]
 gi|36786105|emb|CAE15157.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
          TTO1]
          Length = 69

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITP    +   DVF+H SA+ S G   L EGQ V ++  Q+   G
Sbjct: 5  TGTVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSEGFKTLAEGQKVEFEI-QDGQKG 60

Query: 64 KYSAEN 69
            +A  
Sbjct: 61 PSAANV 66


>gi|110635634|ref|YP_675842.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
          BNC1]
 gi|110286618|gb|ABG64677.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
          Length = 69

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI P+   +   DVF+H SAV  AG+  + EGQ +++D V+++ 
Sbjct: 1  MTIGTVKFFNATKGFGFIQPD---DGAADVFVHISAVERAGMRTIVEGQKLSFDVVRDNR 57

Query: 62 NGKYSAENLK 71
          +GK +AENL+
Sbjct: 58 SGKSAAENLQ 67


>gi|15923806|ref|NP_371340.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926469|ref|NP_374002.1| cold-shock protein C [Staphylococcus aureus subsp. aureus N315]
 gi|21282499|ref|NP_645587.1| cold-shock protein C [Staphylococcus aureus subsp. aureus MW2]
 gi|49483048|ref|YP_040272.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49485662|ref|YP_042883.1| putative cold shock protein [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57650136|ref|YP_185734.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus COL]
 gi|82750501|ref|YP_416242.1| cold-shock protein C [Staphylococcus aureus RF122]
 gi|87161313|ref|YP_493477.1| cold shock protein [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|88194578|ref|YP_499374.1| hypothetical protein SAOUHSC_00819 [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|148267252|ref|YP_001246195.1| cold-shock DNA-binding domain-containing protein [Staphylococcus
          aureus subsp. aureus JH9]
 gi|150393301|ref|YP_001315976.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus JH1]
 gi|151220973|ref|YP_001331795.1| cold-shock protein CSD family protein [Staphylococcus aureus
          subsp. aureus str. Newman]
 gi|156979143|ref|YP_001441402.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509065|ref|YP_001574724.1| cold-shock protein [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|221141194|ref|ZP_03565687.1| cold-shock protein [Staphylococcus aureus subsp. aureus str.
          JKD6009]
 gi|253316731|ref|ZP_04839944.1| cold shock protein [Staphylococcus aureus subsp. aureus str.
          CF-Marseille]
 gi|253731424|ref|ZP_04865589.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253732760|ref|ZP_04866925.1| cold-shock protein C [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005605|ref|ZP_05144206.2| cold shock protein [Staphylococcus aureus subsp. aureus
          Mu50-omega]
 gi|257424912|ref|ZP_05601339.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257427580|ref|ZP_05603979.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257430213|ref|ZP_05606596.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432912|ref|ZP_05609272.1| cold-shock protein C [Staphylococcus aureus subsp. aureus E1410]
 gi|257435816|ref|ZP_05611864.1| cold-shock protein C [Staphylococcus aureus subsp. aureus M876]
 gi|257794886|ref|ZP_05643865.1| cold shock protein [Staphylococcus aureus A9781]
 gi|258418202|ref|ZP_05682467.1| cold shock protein [Staphylococcus aureus A9763]
 gi|258421499|ref|ZP_05684424.1| cold-shock protein [Staphylococcus aureus A9719]
 gi|258423441|ref|ZP_05686332.1| cold shock protein [Staphylococcus aureus A9635]
 gi|258439159|ref|ZP_05690203.1| cold-shock protein C [Staphylococcus aureus A9299]
 gi|258440913|ref|ZP_05690748.1| cold-shock protein DNA-binding [Staphylococcus aureus A8115]
 gi|258445743|ref|ZP_05693920.1| cold-shock protein C [Staphylococcus aureus A6300]
 gi|258449556|ref|ZP_05697658.1| cold-shock protein CSD family protein [Staphylococcus aureus
          A6224]
 gi|258452159|ref|ZP_05700175.1| cold-shock protein CSD family protein [Staphylococcus aureus
          A5948]
 gi|258453956|ref|ZP_05701928.1| cold-shock protein C [Staphylococcus aureus A5937]
 gi|262050053|ref|ZP_06022910.1| cold-shock protein C [Staphylococcus aureus D30]
 gi|262053165|ref|ZP_06025326.1| cold-shock protein C [Staphylococcus aureus 930918-3]
 gi|269202417|ref|YP_003281686.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus ED98]
 gi|282894625|ref|ZP_06302852.1| cold shock protein cspC [Staphylococcus aureus A8117]
 gi|282903424|ref|ZP_06311315.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          C160]
 gi|282905203|ref|ZP_06313060.1| cold shock protein beta-ribbon CspA family protein
          [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908183|ref|ZP_06316014.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282910439|ref|ZP_06318243.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282913636|ref|ZP_06321425.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M899]
 gi|282916136|ref|ZP_06323899.1| cold shock protein [Staphylococcus aureus subsp. aureus D139]
 gi|282918587|ref|ZP_06326324.1| cold shock protein [Staphylococcus aureus subsp. aureus C427]
 gi|282923553|ref|ZP_06331233.1| cold shock-like protein cspC [Staphylococcus aureus subsp. aureus
          C101]
 gi|282926148|ref|ZP_06333783.1| cold shock-like protein cspC [Staphylococcus aureus A9765]
 gi|282926662|ref|ZP_06334292.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A10102]
 gi|283769955|ref|ZP_06342847.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus H19]
 gi|283957625|ref|ZP_06375078.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|284023816|ref|ZP_06378214.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus 132]
 gi|293500678|ref|ZP_06666529.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus 58-424]
 gi|293509628|ref|ZP_06668339.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus M809]
 gi|293524214|ref|ZP_06670901.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M1015]
 gi|294850139|ref|ZP_06790875.1| cold shock protein [Staphylococcus aureus A9754]
 gi|295406518|ref|ZP_06816324.1| cold shock-like protein cspC [Staphylococcus aureus A8819]
 gi|295427371|ref|ZP_06820006.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297208480|ref|ZP_06924909.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|297245243|ref|ZP_06929117.1| cold shock-like protein cspC [Staphylococcus aureus A8796]
 gi|297590271|ref|ZP_06948910.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8]
 gi|300912553|ref|ZP_07129996.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|304381582|ref|ZP_07364232.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|2226349|gb|AAB61744.1| CspC [Staphylococcus aureus RN4220]
 gi|13700683|dbj|BAB41980.1| cold-shock protein C [Staphylococcus aureus subsp. aureus N315]
 gi|14246585|dbj|BAB56978.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu50]
 gi|21203936|dbj|BAB94635.1| cold-shock protein C [Staphylococcus aureus subsp. aureus MW2]
 gi|49241177|emb|CAG39856.1| putative cold shock protein [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|49244105|emb|CAG42531.1| putative cold shock protein [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57284322|gb|AAW36416.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
          aureus COL]
 gi|82656032|emb|CAI80437.1| cold-shock protein C [Staphylococcus aureus RF122]
 gi|87127287|gb|ABD21801.1| cold shock protein [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|87202136|gb|ABD29946.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|147740321|gb|ABQ48619.1| cold-shock DNA-binding protein family [Staphylococcus aureus
          subsp. aureus JH9]
 gi|149945753|gb|ABR51689.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus JH1]
 gi|150373773|dbj|BAF67033.1| cold-shock protein CSD family protein [Staphylococcus aureus
          subsp. aureus str. Newman]
 gi|156721278|dbj|BAF77695.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367874|gb|ABX28845.1| cold-shock protein [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|253724824|gb|EES93553.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253729280|gb|EES98009.1| cold-shock protein C [Staphylococcus aureus subsp. aureus TCH130]
 gi|257272482|gb|EEV04605.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257275773|gb|EEV07246.1| cold-shock protein C [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257278990|gb|EEV09601.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282327|gb|EEV12462.1| cold-shock protein C [Staphylococcus aureus subsp. aureus E1410]
 gi|257285007|gb|EEV15126.1| cold-shock protein C [Staphylococcus aureus subsp. aureus M876]
 gi|257788858|gb|EEV27198.1| cold shock protein [Staphylococcus aureus A9781]
 gi|257838995|gb|EEV63474.1| cold shock protein [Staphylococcus aureus A9763]
 gi|257842425|gb|EEV66849.1| cold-shock protein [Staphylococcus aureus A9719]
 gi|257846502|gb|EEV70525.1| cold shock protein [Staphylococcus aureus A9635]
 gi|257847731|gb|EEV71728.1| cold-shock protein C [Staphylococcus aureus A9299]
 gi|257852427|gb|EEV76348.1| cold-shock protein DNA-binding [Staphylococcus aureus A8115]
 gi|257855319|gb|EEV78257.1| cold-shock protein C [Staphylococcus aureus A6300]
 gi|257857064|gb|EEV79963.1| cold-shock protein CSD family protein [Staphylococcus aureus
          A6224]
 gi|257860374|gb|EEV83206.1| cold-shock protein CSD family protein [Staphylococcus aureus
          A5948]
 gi|257863821|gb|EEV86577.1| cold-shock protein C [Staphylococcus aureus A5937]
 gi|259158935|gb|EEW44018.1| cold-shock protein C [Staphylococcus aureus 930918-3]
 gi|259161849|gb|EEW46434.1| cold-shock protein C [Staphylococcus aureus D30]
 gi|262074707|gb|ACY10680.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus ED98]
 gi|269940369|emb|CBI48746.1| putative cold shock protein [Staphylococcus aureus subsp. aureus
          TW20]
 gi|282314421|gb|EFB44811.1| cold shock-like protein cspC [Staphylococcus aureus subsp. aureus
          C101]
 gi|282317721|gb|EFB48093.1| cold shock protein [Staphylococcus aureus subsp. aureus C427]
 gi|282320084|gb|EFB50431.1| cold shock protein [Staphylococcus aureus subsp. aureus D139]
 gi|282322668|gb|EFB52990.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M899]
 gi|282325831|gb|EFB56139.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282327848|gb|EFB58130.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282331610|gb|EFB61122.1| cold shock protein beta-ribbon CspA family protein
          [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282591555|gb|EFB96627.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A10102]
 gi|282592289|gb|EFB97306.1| cold shock-like protein cspC [Staphylococcus aureus A9765]
 gi|282596379|gb|EFC01340.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          C160]
 gi|282762902|gb|EFC03035.1| cold shock protein cspC [Staphylococcus aureus A8117]
 gi|283460102|gb|EFC07192.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus H19]
 gi|283470089|emb|CAQ49300.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          ST398]
 gi|283791076|gb|EFC29891.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|285816495|gb|ADC36982.1| Cold shock protein CspC [Staphylococcus aureus 04-02981]
 gi|290921177|gb|EFD98238.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M1015]
 gi|291095683|gb|EFE25944.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus 58-424]
 gi|291467725|gb|EFF10240.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus M809]
 gi|294822913|gb|EFG39346.1| cold shock protein [Staphylococcus aureus A9754]
 gi|294968663|gb|EFG44686.1| cold shock-like protein cspC [Staphylococcus aureus A8819]
 gi|295128759|gb|EFG58390.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886735|gb|EFH25639.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|297177914|gb|EFH37163.1| cold shock-like protein cspC [Staphylococcus aureus A8796]
 gi|297576570|gb|EFH95285.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8]
 gi|298694126|gb|ADI97348.1| cold-shock protein C [Staphylococcus aureus subsp. aureus ED133]
 gi|300886799|gb|EFK82001.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|302332502|gb|ADL22695.1| cold-shock DNA-binding domain protein, CspC [Staphylococcus
          aureus subsp. aureus JKD6159]
 gi|302750688|gb|ADL64865.1| cold-shock DNA-binding domain protein, CspC [Staphylococcus
          aureus subsp. aureus str. JKD6008]
 gi|304339945|gb|EFM05889.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|312438777|gb|ADQ77848.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus
          TCH60]
 gi|315128997|gb|EFT84994.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|315194411|gb|EFU24803.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS00]
 gi|315196274|gb|EFU26628.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140093|gb|EFW31953.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus MRSA131]
 gi|320141733|gb|EFW33562.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus MRSA177]
 gi|323438537|gb|EGA96285.1| cold-shock protein C [Staphylococcus aureus O11]
 gi|323441972|gb|EGA99609.1| cold-shock protein C [Staphylococcus aureus O46]
 gi|329313533|gb|AEB87946.1| Cold-shock DNA-binding protein family [Staphylococcus aureus
          subsp. aureus T0131]
 gi|329724582|gb|EGG61089.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 21172]
 gi|329726262|gb|EGG62732.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 21189]
 gi|329733929|gb|EGG70251.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 21193]
          Length = 66

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E     G DVF+H SA+A  G  +L EGQ V +D V+ D 
Sbjct: 1  MNNGTVKWFNAEKGFGFIERE----DGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGD- 55

Query: 62 NGKYSAENLKL 72
           G+ +A  +K+
Sbjct: 56 RGEQAANVVKM 66


>gi|238753480|ref|ZP_04614843.1| Cold shock-like protein cspD [Yersinia ruckeri ATCC 29473]
 gi|238708433|gb|EEQ00788.1| Cold shock-like protein cspD [Yersinia ruckeri ATCC 29473]
          Length = 73

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPE---NGGEDIFAHYSTIQMDGYRTLKAGQQVNFDIHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|238784506|ref|ZP_04628514.1| Cold shock-like protein cspD [Yersinia bercovieri ATCC 43970]
 gi|238714569|gb|EEQ06573.1| Cold shock-like protein cspD [Yersinia bercovieri ATCC 43970]
          Length = 85

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|116669616|ref|YP_830549.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
          FB24]
 gi|116609725|gb|ABK02449.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
          Length = 67

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI+P+   +S  DVF H SA+ S+G  +L E Q V+++  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFISPD---DSSQDVFAHYSAINSSGFRSLEENQKVSFETEQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--PQATNIQAI 67


>gi|237748947|ref|ZP_04579427.1| cold shock transcription regulator [Oxalobacter formigenes
          OXCC13]
 gi|229380309|gb|EEO30400.1| cold shock transcription regulator [Oxalobacter formigenes
          OXCC13]
          Length = 67

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E G+DVF H SA+ S G  +L E Q V+++      
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---EGGEDVFAHFSAIKSDGFKSLKENQRVSFEVT-TGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|308234392|ref|ZP_07665129.1| cold-shock DNA-binding protein family [Atopobium vaginae DSM
          15829]
 gi|328944208|ref|ZP_08241672.1| cold shock protein B [Atopobium vaginae DSM 15829]
 gi|327491127|gb|EGF22902.1| cold shock protein B [Atopobium vaginae DSM 15829]
          Length = 67

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NPDKGYGFI+ E     GDD+F+H S +   G   L EGQ V +D      
Sbjct: 1  MAQGTVKWFNPDKGYGFISRE----DGDDLFVHFSEIKMDGFKTLDEGQAVEFDIT-TGQ 55

Query: 62 NGKYSAENLK 71
          NGK  A N++
Sbjct: 56 NGKLQASNVR 65


>gi|85703999|ref|ZP_01035102.1| cold shock family protein [Roseovarius sp. 217]
 gi|85671319|gb|EAQ26177.1| cold shock family protein [Roseovarius sp. 217]
          Length = 68

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KWYN  KG+GFI P+     G DVF+H SA+  AGL  L + Q VT+D  ++  
Sbjct: 1  MANGTVKWYNSTKGFGFIAPD---NGGKDVFVHVSAIERAGLTGLADNQKVTFDI-ESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL+L
Sbjct: 57 DGRESASNLQL 67


>gi|149179855|ref|ZP_01858360.1| cold shock protein [Bacillus sp. SG-1]
 gi|148852047|gb|EDL66192.1| cold shock protein [Bacillus sp. SG-1]
          Length = 66

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ + 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAITGEGFKSLDEGQRVEFEVVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|332670111|ref|YP_004453119.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332339149|gb|AEE45732.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
          484]
          Length = 67

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +G    G DVF+H SA+ + G  +L EGQ V ++  Q D 
Sbjct: 1  MAQGAVKWFNAEKGYGFIAQDG---GGADVFVHYSAIDTQGYRSLDEGQRVEFEITQGDK 57

Query: 62 NGKYSAENLKLV 73
               AE+++ +
Sbjct: 58 G--PQAEHVRPL 67


>gi|158317202|ref|YP_001509710.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
          EAN1pec]
 gi|158112607|gb|ABW14804.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
          Length = 94

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+N +KG+GFI+ +G    G DVF H S++   G  +L EGQ V++D  Q   
Sbjct: 27 VSEGTVKWFNAEKGFGFISVDG---GGPDVFAHFSSIVGDGYKSLEEGQRVSFDIEQGQ- 82

Query: 62 NGKYSAEN 69
           G  +A+ 
Sbjct: 83 KGPQAAKV 90


>gi|260425469|ref|ZP_05779449.1| conserved domain protein [Citreicella sp. SE45]
 gi|260423409|gb|EEX16659.1| conserved domain protein [Citreicella sp. SE45]
          Length = 68

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE       DVF+H SA+  +GL  L +GQ VT+D V++  
Sbjct: 1  MATGTVKWFNTTKGFGFIEPE---NGSRDVFVHISALQRSGLDRLEDGQKVTFD-VESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ +A NL L
Sbjct: 57 DGRENANNLAL 67


>gi|319892401|ref|YP_004149276.1| Cold shock protein CspA [Staphylococcus pseudintermedius
          HKU10-03]
 gi|317162097|gb|ADV05640.1| Cold shock protein CspA [Staphylococcus pseudintermedius
          HKU10-03]
 gi|323464494|gb|ADX76647.1| cold shock protein [Staphylococcus pseudintermedius ED99]
          Length = 66

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLDEGQSVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|123441828|ref|YP_001005812.1| cold shock-like protein [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122088789|emb|CAL11595.1| cold shock-like protein [Yersinia enterocolitica subsp.
          enterocolitica 8081]
          Length = 85

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|170723167|ref|YP_001750855.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
           putida W619]
 gi|169761170|gb|ACA74486.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
          Length = 197

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           M   G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  +  D
Sbjct: 128 MRDTGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 183

Query: 61  ANGKYSAENLKLV 73
                 AE++  V
Sbjct: 184 KG--LQAEDVVAV 194


>gi|118445055|ref|YP_879083.1| cold shock protein cspB [Clostridium novyi NT]
 gi|118135511|gb|ABK62555.1| cold shock protein cspB [Clostridium novyi NT]
          Length = 66

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI+ EG     DDVF+H SA+   G   L EGQ V ++  +  A
Sbjct: 1  MKTGIVKWFNAEKGFGFISVEGE----DDVFVHFSAIQGEGFKTLEEGQKVEFEVTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|70729479|ref|YP_259217.1| cold shock protein capa, fragment-like protein [Pseudomonas
          fluorescens Pf-5]
 gi|312961945|ref|ZP_07776442.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
 gi|68343778|gb|AAY91384.1| cold shock protein capa [Pseudomonas fluorescens Pf-5]
 gi|311283755|gb|EFQ62339.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
          Length = 91

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ V++   +   
Sbjct: 25 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAEKGQ 80

Query: 62 NGKYSAEN 69
           G  +A+ 
Sbjct: 81 KGMQAAQV 88


>gi|295094368|emb|CBK83459.1| cold-shock DNA-binding protein family [Coprococcus sp. ART55/1]
          Length = 71

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI+ +   E+G DVF+H SA+ S G   L EGQ VT+D   +  
Sbjct: 1  MKNGTVKWFNGEKGYGFISDD---ETGKDVFVHFSAINSDGYKTLNEGQKVTFDVEADPK 57

Query: 62 NG-KYSAENLKLV 73
          +  K  A N+ +V
Sbjct: 58 DASKERATNVTVV 70


>gi|307546021|ref|YP_003898500.1| cold shock protein CspA [Halomonas elongata DSM 2581]
 gi|307218045|emb|CBV43315.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas
          elongata DSM 2581]
          Length = 68

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI+PE   + GDD+F+H S + + G  +L +GQ V+++  Q   
Sbjct: 1  MATGTVKWFNDTKGYGFISPE---DGGDDLFVHFSEIQAEGFKSLQDGQKVSFEVTQGKK 57

Query: 62 NGKYSAENLKL 72
               A N+++
Sbjct: 58 G--LQASNVRV 66


>gi|349561|gb|AAB66357.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium]
          Length = 70

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H SA+ + G  +L EGQ V++   ++ A G
Sbjct: 6  TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 61

Query: 64 KYSAENLKL 72
            +A    L
Sbjct: 62 PAAANVTSL 70


>gi|254382460|ref|ZP_04997819.1| cold shock protein [Streptomyces sp. Mg1]
 gi|194341364|gb|EDX22330.1| cold shock protein [Streptomyces sp. Mg1]
          Length = 67

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E QLV +D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQLVNFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENVT 65


>gi|157369432|ref|YP_001477421.1| cold shock protein CspE [Serratia proteamaculans 568]
 gi|157321196|gb|ABV40293.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
          Length = 69

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++  Q  A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFEITQG-AKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|148257897|ref|YP_001242482.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
          BTAi1]
 gi|146410070|gb|ABQ38576.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
          Length = 66

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P      G D+F+H SAV  AGL  L EGQ + Y+ + N  
Sbjct: 1  MAKGTVKWFNPTKGYGFIQP---AAGGKDIFVHISAVQKAGLTTLNEGQTIEYEEIAN-- 55

Query: 62 NGKYSAENLKL 72
           G+ SAENLK+
Sbjct: 56 RGRSSAENLKV 66


>gi|226939300|ref|YP_002794371.1| cspD2 [Laribacter hongkongensis HLHK9]
 gi|226714224|gb|ACO73362.1| cspD2 [Laribacter hongkongensis HLHK9]
          Length = 68

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H SA+   G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSAINMNGFKTLKEGQRVNFDVNQG-P 56

Query: 62 NGKYSAE 68
           GK ++ 
Sbjct: 57 KGKQASN 63


>gi|163739594|ref|ZP_02147003.1| cold shock protein CspA-related protein, putative [Phaeobacter
          gallaeciensis BS107]
 gi|161387053|gb|EDQ11413.1| cold shock protein CspA-related protein, putative [Phaeobacter
          gallaeciensis BS107]
          Length = 68

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      DVF+H SA+  AGL  L + Q VT+D  +   
Sbjct: 1  MANGTVKWFNSTKGFGFIAPEG---GSRDVFVHISALERAGLTTLNDDQKVTFDI-EAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESAANLAL 67


>gi|21222890|ref|NP_628669.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|256785998|ref|ZP_05524429.1| cold shock protein [Streptomyces lividans TK24]
 gi|289769893|ref|ZP_06529271.1| cold shock protein [Streptomyces lividans TK24]
 gi|7242722|emb|CAB77296.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|289700092|gb|EFD67521.1| cold shock protein [Streptomyces lividans TK24]
          Length = 67

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q V++D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINAQGFRSLEENQQVSFDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN+  V
Sbjct: 58 G--PQAENVTPV 67


>gi|257869655|ref|ZP_05649308.1| cold-shock protein [Enterococcus gallinarum EG2]
 gi|257803819|gb|EEV32641.1| cold-shock protein [Enterococcus gallinarum EG2]
          Length = 66

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFIT +     GDDVF+H SA+   G  +L EGQ V +  V+  A
Sbjct: 1  MEHGKVKWFNNEKGFGFITVD----GGDDVFVHFSAIQGDGFKSLEEGQEVEFSIVEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +AE  K+
Sbjct: 56 RGPQAAEVTKI 66


>gi|85860950|ref|YP_463154.1| cold shock protein [Syntrophus aciditrophicus SB]
 gi|85724041|gb|ABC78984.1| cold shock protein [Syntrophus aciditrophicus SB]
          Length = 132

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++KW+N  KG+GFI  +    +G+DVF+H SA+   G   L EG  V +D V+ + 
Sbjct: 67  MSEGTVKWFNASKGFGFIAQD----NGNDVFVHFSAIKMEGYKALEEGARVRFDVVKGNK 122

Query: 62  NGKYSAENLKLV 73
               +A+N++L+
Sbjct: 123 G--PAADNVELL 132


>gi|242238529|ref|YP_002986710.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
 gi|242130586|gb|ACS84888.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
          Length = 69

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   N A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSTGFKTLAEGQRVEFEIT-NGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|261404404|ref|YP_003240645.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|315644849|ref|ZP_07897978.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|329929715|ref|ZP_08283401.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
 gi|261280867|gb|ACX62838.1| cold-shock DNA-binding domain protein [Paenibacillus sp.
          Y412MC10]
 gi|315279791|gb|EFU43092.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|328935932|gb|EGG32391.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
          Length = 66

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ V ++ V+ + 
Sbjct: 1  MQTGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIQGDGFKTLDEGQRVEFNIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQAENVVKL 66


>gi|261409631|ref|YP_003245872.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|329928767|ref|ZP_08282616.1| cold shock-like protein CspE [Paenibacillus sp. HGF5]
 gi|261286094|gb|ACX68065.1| cold-shock DNA-binding domain protein [Paenibacillus sp.
          Y412MC10]
 gi|328937548|gb|EGG33966.1| cold shock-like protein CspE [Paenibacillus sp. HGF5]
          Length = 65

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     TE G DVF+H SA+ S G   L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFIE----TEDGGDVFVHFSAIQSEGFKTLEEGQSVEFEIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|27468004|ref|NP_764641.1| major cold shock protein CspA [Staphylococcus epidermidis ATCC
          12228]
 gi|73662658|ref|YP_301439.1| cold shock protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|228476062|ref|ZP_04060770.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|282876159|ref|ZP_06285026.1| major cold shock protein CspA [Staphylococcus epidermidis SK135]
 gi|314936453|ref|ZP_07843800.1| conserved domain protein [Staphylococcus hominis subsp. hominis
          C80]
 gi|81842847|sp|Q8CP90|CSPA_STAES RecName: Full=Cold shock protein CspA
 gi|118572257|sp|Q5HPE0|CSPA_STAEQ RecName: Full=Cold shock protein CspA
 gi|118572259|sp|Q49XK3|CSPA_STAS1 RecName: Full=Cold shock protein CspA
 gi|27315549|gb|AAO04683.1|AE016747_180 major cold shock protein CspA [Staphylococcus epidermidis ATCC
          12228]
 gi|72495173|dbj|BAE18494.1| cold shock protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|228269885|gb|EEK11365.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|281295184|gb|EFA87711.1| major cold shock protein CspA [Staphylococcus epidermidis SK135]
 gi|313655072|gb|EFS18817.1| conserved domain protein [Staphylococcus hominis subsp. hominis
          C80]
 gi|319400756|gb|EFV88975.1| cold shock protein cspB [Staphylococcus epidermidis FRI909]
 gi|329729371|gb|EGG65777.1| major cold shock protein CspA [Staphylococcus epidermidis VCU144]
 gi|329732908|gb|EGG69253.1| major cold shock protein CspA [Staphylococcus epidermidis VCU028]
 gi|329735220|gb|EGG71512.1| major cold shock protein CspA [Staphylococcus epidermidis VCU045]
          Length = 66

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|294811207|ref|ZP_06769850.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|294323806|gb|EFG05449.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064]
          Length = 92

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q   
Sbjct: 26 MAQGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELREGQRVSFDVTQGQK 82

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 83 G--PQAENI 89


>gi|154685002|ref|YP_001420163.1| hypothetical protein RBAM_005400 [Bacillus amyloliquefaciens
          FZB42]
 gi|154350853|gb|ABS72932.1| CspC [Bacillus amyloliquefaciens FZB42]
          Length = 67

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E    +GDDVF+H SA+ S G  +L EGQ VT+D  Q  A
Sbjct: 1  MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQG-A 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGAQAANVQK 65


>gi|299821570|ref|ZP_07053458.1| cold shock protein CspA [Listeria grayi DSM 20601]
 gi|299817235|gb|EFI84471.1| cold shock protein CspA [Listeria grayi DSM 20601]
          Length = 66

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V ++ V+   
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIQGDGFKTLDEGQSVEFEIVEGQ- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQAENVVKL 66


>gi|90962451|ref|YP_536367.1| cold shock protein [Lactobacillus salivarius UCC118]
 gi|227891500|ref|ZP_04009305.1| cold shock protein [Lactobacillus salivarius ATCC 11741]
 gi|301299206|ref|ZP_07205493.1| cold shock protein CspB [Lactobacillus salivarius
          ACS-116-V-Col5a]
 gi|90821645|gb|ABE00284.1| Cold shock protein [Lactobacillus salivarius UCC118]
 gi|227866647|gb|EEJ74068.1| cold shock protein [Lactobacillus salivarius ATCC 11741]
 gi|300853166|gb|EFK80763.1| cold shock protein CspB [Lactobacillus salivarius
          ACS-116-V-Col5a]
          Length = 66

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFIT E    +GDDVF+H +A+   G   L EGQ VT+D V++  
Sbjct: 1  MEQGTVKWFNAEKGFGFITRE----NGDDVFVHFTAIQGEGYKTLEEGQHVTFD-VESSD 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGLQAANVVK 65


>gi|222147128|ref|YP_002548085.1| cold shock protein [Agrobacterium vitis S4]
 gi|221734118|gb|ACM35081.1| cold shock protein [Agrobacterium vitis S4]
          Length = 74

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KG+GFI P+     G D F+H SAV  AG+  + EGQ + YD  +++
Sbjct: 5  IMTTGTVKWFNSTKGFGFIQPD---NGGPDAFVHISAVERAGMREIVEGQKIAYDMERDN 61

Query: 61 ANGKYSAENLK 71
           +GK SA NL+
Sbjct: 62 KSGKMSACNLQ 72


>gi|311066997|ref|YP_003971920.1| cold-shock protein [Bacillus atrophaeus 1942]
 gi|310867514|gb|ADP30989.1| cold-shock protein [Bacillus atrophaeus 1942]
          Length = 67

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E    +GDDVF+H SA+ S G  +L EGQ VT+D  Q  A
Sbjct: 1  MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQG-A 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGAQAANVQK 65


>gi|92114621|ref|YP_574549.1| cold-shock DNA-binding protein family protein [Chromohalobacter
          salexigens DSM 3043]
 gi|91797711|gb|ABE59850.1| cold-shock DNA-binding protein family [Chromohalobacter
          salexigens DSM 3043]
          Length = 68

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI+P+   + GDD+F H S + + G  +L +GQ V+++  Q   
Sbjct: 1  MATGTVKWFNDTKGYGFISPD---DGGDDLFAHFSEIQAEGFKSLQDGQKVSFEVTQGKK 57

Query: 62 NGKYSAENLKLV 73
               A N+K+V
Sbjct: 58 G--LQASNIKVV 67


>gi|86139271|ref|ZP_01057841.1| cold shock family protein [Roseobacter sp. MED193]
 gi|85824115|gb|EAQ44320.1| cold shock family protein [Roseobacter sp. MED193]
          Length = 68

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G DVF+H SAV  +GL  L + Q V+Y+  Q   
Sbjct: 1  MATGTVKWFNTTKGFGFIAPD---NGGSDVFVHISAVERSGLTGLADNQKVSYEM-QPGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA +L L+
Sbjct: 57 DGRESAVDLALL 68


>gi|85713889|ref|ZP_01044878.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
 gi|85699015|gb|EAQ36883.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
          Length = 66

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+NP KGYGFI P G    G DVF+H SAV  AGL  L EGQ V ++ V N  
Sbjct: 1  MAKGIVKWFNPTKGYGFIQPAG---GGKDVFVHISAVERAGLSTLNEGQTVEFEEVAN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66


>gi|297562583|ref|YP_003681557.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296847031|gb|ADH69051.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 67

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+P+G    G D F+H SA+   G  NL E Q V ++ VQ   
Sbjct: 1  MAQGTVKWFNGEKGFGFISPDG---GGPDAFVHYSAIQGTGFRNLEENQRVEFEVVQGTR 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENV 64


>gi|225867733|ref|YP_002743681.1| cold shock protein [Streptococcus equi subsp. zooepidemicus]
 gi|225869669|ref|YP_002745616.1| cold shock protein [Streptococcus equi subsp. equi 4047]
 gi|225699073|emb|CAW92213.1| cold shock protein [Streptococcus equi subsp. equi 4047]
 gi|225701009|emb|CAW97768.1| cold shock protein [Streptococcus equi subsp. zooepidemicus]
          Length = 69

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+    TE+G DVF H SA+ S G  +L EGQ VT+D V++  
Sbjct: 3  MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQSDGFRSLDEGQRVTFD-VEDGQ 57

Query: 62 NGKYSAENLKL 72
           G  +    KL
Sbjct: 58 RGPQAVNITKL 68


>gi|207856095|ref|YP_002242746.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|206707898|emb|CAR32186.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|301157230|emb|CBW16717.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
          Length = 70

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 6/74 (8%)

Query: 1  MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M+ +  G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++   
Sbjct: 1  MMSKIKGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT- 56

Query: 59 NDANGKYSAENLKL 72
          N A G  +A    L
Sbjct: 57 NGAKGPSAANVTAL 70


>gi|146338511|ref|YP_001203559.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
 gi|146191317|emb|CAL75322.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
          Length = 66

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P      G D+F+H SAV  AGL  L EGQ + Y+ + N  
Sbjct: 1  MAKGTVKWFNPTKGYGFIQP---AAGGKDIFVHISAVQKAGLATLNEGQTIEYEEIAN-- 55

Query: 62 NGKYSAENLKL 72
           G+ SAENLK+
Sbjct: 56 RGRSSAENLKV 66


>gi|153003150|ref|YP_001377475.1| cold-shock DNA-binding domain-containing protein
          [Anaeromyxobacter sp. Fw109-5]
 gi|152026723|gb|ABS24491.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
          sp. Fw109-5]
          Length = 67

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +     G+DVF H SA+   G  +L EGQ V +D V+   
Sbjct: 1  MATGTVKWFNDAKGFGFITQD---NGGEDVFCHYSAIQGDGFKSLAEGQKVEFDVVKG-P 56

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 57 KGLQAANV 64


>gi|57866866|ref|YP_188550.1| CSD family cold shock protein [Staphylococcus epidermidis RP62A]
 gi|242242680|ref|ZP_04797125.1| cold shock protein CspA [Staphylococcus epidermidis W23144]
 gi|57637524|gb|AAW54312.1| cold shock protein, CSD family [Staphylococcus epidermidis RP62A]
 gi|242233816|gb|EES36128.1| cold shock protein CspA [Staphylococcus epidermidis W23144]
          Length = 77

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 12 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD- 66

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 67 RGPQAANVVKL 77


>gi|15617086|ref|NP_240299.1| cold shock protein CspE [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|21672738|ref|NP_660805.1| cold shock protein CspE [Buchnera aphidicola str. Sg (Schizaphis
          graminum)]
 gi|219681838|ref|YP_002468224.1| cold shock protein E [Buchnera aphidicola str. 5A (Acyrthosiphon
          pisum)]
 gi|219682393|ref|YP_002468777.1| cold shock protein E [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|257471542|ref|ZP_05635541.1| cold shock protein CspE [Buchnera aphidicola str. LSR1
          (Acyrthosiphon pisum)]
 gi|54036912|sp|P63237|CSPE_BUCAI RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|54036913|sp|P63238|CSPE_BUCAP RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|25296105|pir||A84987 cold shock-like protein cspE [imported] - Buchnera sp.  (strain
          APS)
 gi|10039151|dbj|BAB13185.1| cold shock-like protein cspE [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|21623383|gb|AAM68016.1| cold shock like protein CspE [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
 gi|219622126|gb|ACL30282.1| cold shock protein E [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|219624681|gb|ACL30836.1| cold shock protein E [Buchnera aphidicola str. 5A (Acyrthosiphon
          pisum)]
 gi|311086213|gb|ADP66295.1| cold shock protein CspE [Buchnera aphidicola str. LL01
          (Acyrthosiphon pisum)]
 gi|311086791|gb|ADP66872.1| cold shock protein CspE [Buchnera aphidicola str. TLW03
          (Acyrthosiphon pisum)]
 gi|311087378|gb|ADP67458.1| cold shock protein CspE [Buchnera aphidicola str. JF99
          (Acyrthosiphon pisum)]
 gi|311087874|gb|ADP67953.1| cold shock protein CspE [Buchnera aphidicola str. JF98
          (Acyrthosiphon pisum)]
          Length = 69

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++  +  A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEG-AKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVISL 69


>gi|293376634|ref|ZP_06622862.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
          PC909]
 gi|325839413|ref|ZP_08166852.1| cold shock protein CspD [Turicibacter sp. HGF1]
 gi|292644860|gb|EFF62942.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
          PC909]
 gi|325490533|gb|EGC92849.1| cold shock protein CspD [Turicibacter sp. HGF1]
          Length = 66

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI+ E     G+DVF+H SA+   G   L EGQ V++D V+ + 
Sbjct: 1  MNTGTVKWFNAEKGFGFISVE----GGEDVFVHYSAITGEGFKTLEEGQKVSFDIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  ++  +KL
Sbjct: 56 RGAQASNVVKL 66


>gi|302536155|ref|ZP_07288497.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302445050|gb|EFL16866.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 67

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVNFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENVT 65


>gi|220931385|ref|YP_002508293.1| putative cold-shock DNA-binding domain protein [Halothermothrix
          orenii H 168]
 gi|219992695|gb|ACL69298.1| putative cold-shock DNA-binding domain protein [Halothermothrix
          orenii H 168]
          Length = 67

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          MV+ G +KW++  KGYGFI  E     GDDVF+H SA+ + G  +L +G+ V ++ ++ D
Sbjct: 1  MVYTGKVKWFDAKKGYGFIERE----DGDDVFVHFSAIQADGFKSLEDGEEVEFEIIEGD 56

Query: 61 ANGKYSAENLKL 72
            G  +A  + L
Sbjct: 57 -RGPQAANVVTL 67


>gi|312115752|ref|YP_004013348.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
 gi|311220881|gb|ADP72249.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
          Length = 69

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KWYN  KGYGFI P+   + G DVF+H SA+  AGL  L EGQ V+++   +  
Sbjct: 1  MNMGVVKWYNSQKGYGFIQPD---DGGKDVFVHVSALERAGLRGLVEGQKVSFEIQTDRR 57

Query: 62 NGKYSAENLKL 72
            K SA NL++
Sbjct: 58 TDKTSAGNLQV 68


>gi|26246906|ref|NP_752946.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli CFT073]
 gi|91209916|ref|YP_539902.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli UTI89]
 gi|110804882|ref|YP_688402.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella flexneri 5 str. 8401]
 gi|237707154|ref|ZP_04537635.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia sp. 3_2_53FAA]
 gi|291281884|ref|YP_003498702.1| Cold shock protein [Escherichia coli O55:H7 str. CB9615]
 gi|293414163|ref|ZP_06656812.1| cold shock domain-containing protein CspD [Escherichia coli B185]
 gi|293433178|ref|ZP_06661606.1| cold shock domain-containing protein CspD [Escherichia coli B088]
 gi|332282225|ref|ZP_08394638.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella sp. D9]
 gi|26107306|gb|AAN79489.1|AE016758_93 Cold shock-like protein cspD [Escherichia coli CFT073]
 gi|91071490|gb|ABE06371.1| cold shock-like protein CspD [Escherichia coli UTI89]
 gi|110614430|gb|ABF03097.1| cold shock protein [Shigella flexneri 5 str. 8401]
 gi|222032609|emb|CAP75348.1| Cold shock-like protein cspD [Escherichia coli LF82]
 gi|226898364|gb|EEH84623.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia sp. 3_2_53FAA]
 gi|281600209|gb|ADA73193.1| putative Cold shock protein [Shigella flexneri 2002017]
 gi|290761757|gb|ADD55718.1| Cold shock protein [Escherichia coli O55:H7 str. CB9615]
 gi|291323997|gb|EFE63419.1| cold shock domain-containing protein CspD [Escherichia coli B088]
 gi|291434221|gb|EFF07194.1| cold shock domain-containing protein CspD [Escherichia coli B185]
 gi|332104577|gb|EGJ07923.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella sp. D9]
          Length = 84

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 11 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQG-P 66

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 67 KGNHASVIVPV 77


>gi|290963038|ref|YP_003494220.1| cold shock protein [Streptomyces scabiei 87.22]
 gi|260652564|emb|CBG75697.1| putative cold shock protein [Streptomyces scabiei 87.22]
          Length = 94

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +++ G   L EGQ V +D  Q   
Sbjct: 28 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNISAQGFRELLEGQKVNFDIAQGQK 84

Query: 62 NGKYSAENLKLV 73
              +AEN+ LV
Sbjct: 85 G--PTAENIVLV 94


>gi|251794338|ref|YP_003009069.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
 gi|247541964|gb|ACS98982.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
          Length = 66

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ V ++ VQ + 
Sbjct: 1  MEQGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIQGDGFKSLDEGQRVEFNIVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQAENVVKL 66


>gi|77917987|ref|YP_355802.1| cold shock protein [Pelobacter carbinolicus DSM 2380]
 gi|77544070|gb|ABA87632.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
          DSM 2380]
          Length = 66

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +    +G DVF+H SA+   G  +L EG  V++D VQ   
Sbjct: 1  MAEGTVKWFNDAKGFGFIEQD----NGPDVFVHFSAIQGEGFKSLAEGDRVSFDVVQGQ- 55

Query: 62 NGKYSAENLKL 72
           G  SA   K+
Sbjct: 56 KGPQSANVCKI 66


>gi|312880250|ref|ZP_07740050.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM
          12260]
 gi|310783541|gb|EFQ23939.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM
          12260]
          Length = 67

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KGYGFIT    TE G DVF+H SA+   G   L EGQ V+++  Q  
Sbjct: 1  MKTNGTVKWFNATKGYGFIT----TEDGKDVFVHFSAIQGDGFKTLDEGQRVSFEVTQG- 55

Query: 61 ANGKYSAENLKL 72
          + G  +++  KL
Sbjct: 56 SKGPQASDVEKL 67


>gi|328951178|ref|YP_004368513.1| cold-shock DNA-binding domain protein [Marinithermus
          hydrothermalis DSM 14884]
 gi|328451502|gb|AEB12403.1| cold-shock DNA-binding domain protein [Marinithermus
          hydrothermalis DSM 14884]
          Length = 73

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N  KGYGFI  EG +    DVF+H +A+   G   L EG +VT++      
Sbjct: 1  MQRGRVKWFNATKGYGFIEREGDS----DVFVHYTAINGTGFRTLNEGDIVTFEVEPGRP 56

Query: 62 NGKYSAENLKLVPKS 76
               A N+ +V  +
Sbjct: 57 GKGPQATNVTVVEPA 71


>gi|326406197|gb|ADZ63268.1| cold shock protein beta-ribbon [Lactococcus lactis subsp. lactis
          CV56]
          Length = 91

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KG+GFIT    +E G D+F H S++ S G  +L EGQ V +D  +  
Sbjct: 25 IMANGTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEGQKVEFDVEEGQ 80

Query: 61 ANGKYSAENLK 71
                A N+ 
Sbjct: 81 RG--PQAVNIT 89


>gi|28377937|ref|NP_784829.1| cold shock protein CspP [Lactobacillus plantarum WCFS1]
 gi|254556121|ref|YP_003062538.1| cold shock protein CspP [Lactobacillus plantarum JDM1]
 gi|300766640|ref|ZP_07076557.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308180118|ref|YP_003924246.1| cold shock protein CspP [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|2493768|sp|P71478|CSP1_LACPL RecName: Full=Cold shock protein 1
 gi|1620431|emb|CAA70005.1| csp [Lactobacillus plantarum]
 gi|9968450|emb|CAC06094.1| cold shock protein [Lactobacillus plantarum]
 gi|28270771|emb|CAD63676.1| cold shock protein CspP [Lactobacillus plantarum WCFS1]
 gi|254045048|gb|ACT61841.1| cold shock protein CspP [Lactobacillus plantarum JDM1]
 gi|300495740|gb|EFK30891.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308045609|gb|ADN98152.1| cold shock protein CspP [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 66

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKGYGFIT     E G+DVF+H SA+ + G   L EGQ VT+D  ++  
Sbjct: 1  MKNGTVKWFNADKGYGFIT----GEDGNDVFVHFSAIQTDGFKTLEEGQKVTFD-EESSD 55

Query: 62 NGKYSAENL 70
           G  +A  +
Sbjct: 56 RGPQAANVV 64


>gi|74316697|ref|YP_314437.1| cold-shock DNA-binding protein family protein [Thiobacillus
          denitrificans ATCC 25259]
 gi|74056192|gb|AAZ96632.1| Possible Cold-shock DNA-binding domain protein [Thiobacillus
          denitrificans ATCC 25259]
          Length = 68

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H SA+ + G  +L E Q V+++      
Sbjct: 1  METGTVKWFNDAKGFGFITPD---NGGEDLFAHFSAINANGFKSLQENQRVSFEVTTGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+++V
Sbjct: 58 G--KQASNIQVV 67


>gi|226223965|ref|YP_002758072.1| cold shock protein [Listeria monocytogenes Clip81459]
 gi|1001878|emb|CAA62903.1| CspA protein [Listeria monocytogenes]
 gi|225876427|emb|CAS05136.1| Putative cold shock protein [Listeria monocytogenes serotype 4b
          str. CLIP 80459]
 gi|313608931|gb|EFR84686.1| conserved domain protein [Listeria monocytogenes FSL F2-208]
          Length = 68

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E    +GDDVF+H SA+   G  +L EGQ VT+D V+   
Sbjct: 3  MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQGDGFKSLDEGQAVTFD-VEEGQ 57

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 58 RGPQAANVQK 67


>gi|306821247|ref|ZP_07454861.1| cold shock protein CspA [Eubacterium yurii subsp. margaretiae
          ATCC 43715]
 gi|304550759|gb|EFM38736.1| cold shock protein CspA [Eubacterium yurii subsp. margaretiae
          ATCC 43715]
          Length = 65

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFI  E     GDDVF+H SA+ + G   L EGQ V ++   + A G
Sbjct: 2  TGKVKWFNAEKGFGFIERE----GGDDVFVHFSAIQTDGFKTLDEGQNVEFEIT-DGARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|229121251|ref|ZP_04250482.1| Cold shock-like protein cspB [Bacillus cereus 95/8201]
 gi|228662096|gb|EEL17705.1| Cold shock-like protein cspB [Bacillus cereus 95/8201]
          Length = 77

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 14 QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 68

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 69 PQAANVVKL 77


>gi|163791309|ref|ZP_02185723.1| cold shock protein [Carnobacterium sp. AT7]
 gi|159873450|gb|EDP67540.1| cold shock protein [Carnobacterium sp. AT7]
          Length = 66

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     GDD+F+H SA+   G  +L EGQ V ++ V+ + 
Sbjct: 1  MEKGTVKWFNAEKGFGFIEVE----GGDDIFVHFSAITGDGFKSLEEGQAVEFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGAQAANVVKL 66


>gi|159042565|ref|YP_001531359.1| cold-shock DNA-binding domain-containing protein [Dinoroseobacter
          shibae DFL 12]
 gi|157910325|gb|ABV91758.1| cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL
          12]
          Length = 68

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G      DVF+H SAV  AGL  L + Q VT+D  ++  
Sbjct: 1  MATGTVKWFNATKGFGFIAPDG---GSRDVFVHISAVERAGLTGLEDNQKVTFDI-ESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESAANLAL 67


>gi|94676996|ref|YP_588711.1| cold shock protein CspE [Baumannia cicadellinicola str. Hc
          (Homalodisca coagulata)]
 gi|94220146|gb|ABF14305.1| cold shock-like protein CspE [Baumannia cicadellinicola str. Hc
          (Homalodisca coagulata)]
          Length = 69

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   N A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 60

Query: 64 KYSAENLKL 72
            +A+ + +
Sbjct: 61 PSAADVIAI 69


>gi|319651256|ref|ZP_08005386.1| cold shock protein cspD [Bacillus sp. 2_A_57_CT2]
 gi|317397036|gb|EFV77744.1| cold shock protein cspD [Bacillus sp. 2_A_57_CT2]
          Length = 66

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     GDDVF+H +A+   G  +L EGQ V+++ V+ + 
Sbjct: 1  MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIQGEGFKSLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|56964834|ref|YP_176565.1| cold shock protein CspC [Bacillus clausii KSM-K16]
 gi|56911077|dbj|BAD65604.1| cold shock protein CspC [Bacillus clausii KSM-K16]
          Length = 65

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  E     GDDVF+H SA+ S G   L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFNAEKGFGFIERE----DGDDVFVHFSAINSDGFKTLDEGQDVEFEIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|269956067|ref|YP_003325856.1| cold-shock DNA-binding domain-containing protein [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269304748|gb|ACZ30298.1| cold-shock DNA-binding domain protein [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 67

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +GS+KW+N +KGYGFI  +G    G DVF+H SA+ S G  +L E Q V ++  Q   
Sbjct: 1  MAQGSVKWFNAEKGYGFIAQDG---GGADVFVHYSAIQSNGYRSLEEAQRVEFEITQG-P 56

Query: 62 NGKYSAENLKL 72
           G  + + + L
Sbjct: 57 KGPQAEQVVPL 67


>gi|325920664|ref|ZP_08182574.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
          19865]
 gi|325548854|gb|EGD19798.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
          19865]
          Length = 68

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+PE   +   DVF H SA+ S G  +L EGQ V+YD  Q   
Sbjct: 1  MQNGTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVSYDVTQGPK 57

Query: 62 NGKYSAENLKLVP 74
               A N+  V 
Sbjct: 58 G--AQASNITPVE 68


>gi|312115790|ref|YP_004013386.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
 gi|311220919|gb|ADP72287.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
          Length = 69

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K++N +KGYGFI P+       DVF+H SAV  AG+  + EGQ ++++ V++  
Sbjct: 1  MNTGTVKFFNVNKGYGFIQPDS---GSADVFVHISAVERAGMRTIVEGQKLSFEIVRDAR 57

Query: 62 NGKYSAENLK 71
          +GK SAENL+
Sbjct: 58 SGKSSAENLQ 67


>gi|225427973|ref|XP_002277628.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 214

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITP+   + GDD+F+H+S++ S G  +L EG+ V +  V++  +G
Sbjct: 5  TGTVKWFNDQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDG 60

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 61 RTKAVDVT 68


>gi|110835605|ref|YP_694464.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2]
 gi|110648716|emb|CAL18192.1| cold-shock domain family protein [Alcanivorax borkumensis SK2]
          Length = 67

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+ +   + G DVF+H SA+  +G   L EGQ V+++  Q   
Sbjct: 1  MATGTVKWFNESKGFGFISQD---DGGADVFVHFSAITGSGFKTLAEGQKVSFEIQQG-P 56

Query: 62 NGKYSAENL 70
           G  +A  +
Sbjct: 57 KGPQAANVV 65


>gi|77463958|ref|YP_353462.1| cold-shock DNA-binding protein family protein [Rhodobacter
          sphaeroides 2.4.1]
 gi|126462801|ref|YP_001043915.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|146276900|ref|YP_001167059.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|332558830|ref|ZP_08413152.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides WS8N]
 gi|77388376|gb|ABA79561.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          2.4.1]
 gi|126104465|gb|ABN77143.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17029]
 gi|145555141|gb|ABP69754.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17025]
 gi|332276542|gb|EGJ21857.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides WS8N]
          Length = 68

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL  L++ Q + Y+  Q+  
Sbjct: 1  MPTGTVKWFNSTKGFGFIAPD---DGGKDVFVHISAVERAGLKGLSDNQKIGYEL-QSGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA +L+L+
Sbjct: 57 DGRSSAGDLRLL 68


>gi|291561124|emb|CBL39923.1| cold-shock DNA-binding protein family [butyrate-producing
          bacterium SS3/4]
          Length = 70

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KGYGFI+ +     GDDVF+H SA+   G   L EGQ VT+D  Q+  
Sbjct: 1  MNNGTVKWFNSEKGYGFISND---NGGDDVFVHFSAIVGDGFKTLEEGQKVTFDTEQDPK 57

Query: 62 N-GKYSAENL 70
          N  K  A N+
Sbjct: 58 NSKKLRAVNV 67


>gi|281500776|pdb|3I2Z|B Chain B, Structure Of Cold Shock Protein E From Salmonella
          Typhimurium
 gi|281500777|pdb|3I2Z|A Chain A, Structure Of Cold Shock Protein E From Salmonella
          Typhimurium
          Length = 71

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++   N A G
Sbjct: 7  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 62

Query: 64 KYSAENLKL 72
            +A    L
Sbjct: 63 PSAANVTAL 71


>gi|220932483|ref|YP_002509391.1| putative cold-shock DNA-binding domain protein [Halothermothrix
          orenii H 168]
 gi|219993793|gb|ACL70396.1| putative cold-shock DNA-binding domain protein [Halothermothrix
          orenii H 168]
          Length = 67

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M++ G +KW++P KGYGFI  +     GDDVF+H SA+   G   L EGQ V ++ V+++
Sbjct: 1  MIYSGKVKWFDPKKGYGFIERD----EGDDVFVHFSAIKEEGFKTLEEGQEVEFEIVESE 56

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 57 -RGPQAANVVKL 67


>gi|262200536|ref|YP_003271744.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
 gi|262083883|gb|ACY19851.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
          Length = 79

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+   + G DVF+H SA+  +G  NL E Q V +D  Q   
Sbjct: 13 MAQGTVKWFNGEKGFGFIAPD---DQGADVFVHFSAIQGSGFRNLEEAQRVEFDVEQGAK 69

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 70 G--LQATNVSVI 79


>gi|29827367|ref|NP_822001.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29604466|dbj|BAC68536.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 67

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF+H SA+ SAG   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIEQEG---GGPDVFVHYSAINSAGFRELQEGQKVNFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENVT 65


>gi|90425745|ref|YP_534115.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisB18]
 gi|90107759|gb|ABD89796.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB18]
          Length = 66

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI P   +  G DVF+H SAV  AGL  L EGQ V ++ V N  
Sbjct: 1  MAKGTVKWFNATKGFGFIQP---SNGGKDVFVHISAVEKAGLSTLNEGQTVEFEEVAN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66


>gi|322382422|ref|ZP_08056325.1| major cold-shock protein RNA helicase co-factor RNA
          co-chaperone-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321153639|gb|EFX46018.1| major cold-shock protein RNA helicase co-factor RNA
          co-chaperone-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 65

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI  E     G DVF+H SA+   G   L EGQ V +D V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFIERE----DGGDVFVHFSAIQGEGFKTLEEGQSVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|319949463|ref|ZP_08023522.1| cold-shock DNA-binding domain protein [Dietzia cinnamea P4]
 gi|319436867|gb|EFV91928.1| cold-shock DNA-binding domain protein [Dietzia cinnamea P4]
          Length = 67

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFI P+   +   DVF H SA+  +G  +L E Q V++D  Q   
Sbjct: 1  MATGTVKWFNADKGFGFIAPD---DGSADVFAHFSAIQGSGYRSLEENQQVSFDVAQGAK 57

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 58 G--LQAENITPM 67


>gi|13472379|ref|NP_103946.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|260467123|ref|ZP_05813302.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|319781908|ref|YP_004141384.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|14023125|dbj|BAB49732.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
 gi|259029135|gb|EEW30432.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|317167796|gb|ADV11334.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 70

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N  KG+GFITP+G      DVF+H SA+ ++GL  L +GQ VT+D   + 
Sbjct: 1  MAQTGTVKFFNATKGFGFITPDG---GAKDVFVHISAIEASGLRTLVDGQKVTFDVEPDR 57

Query: 61 ANGKYSAENLK 71
                A NL+
Sbjct: 58 MGKGPKAVNLR 68


>gi|134297915|ref|YP_001111411.1| cold-shock DNA-binding domain-containing protein
          [Desulfotomaculum reducens MI-1]
 gi|134050615|gb|ABO48586.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens
          MI-1]
          Length = 66

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI     TE G DVF+H SA+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQKGTVKWFNAEKGYGFIE----TEEGSDVFVHFSAITGDGFKTLEEGQRVSFNVVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  + E +KL
Sbjct: 56 RGPQAEEVVKL 66


>gi|296332857|ref|ZP_06875317.1| cold-shock protein [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305673203|ref|YP_003864875.1| cold-shock protein [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150137|gb|EFG91026.1| cold-shock protein [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305411447|gb|ADM36566.1| cold-shock protein [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 67

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +    +GDDVF+H SA+   G  +L EGQ VT+D  Q  A
Sbjct: 1  MEQGTVKWFNAEKGFGFIERD----NGDDVFVHFSAIQGDGFKSLDEGQKVTFDVEQG-A 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGAQAANVQK 65


>gi|27904911|ref|NP_778037.1| cold shock protein CspE [Buchnera aphidicola str. Bp (Baizongia
          pistaciae)]
 gi|38372204|sp|Q89A90|CSPE_BUCBP RecName: Full=Cold shock-like protein CspE; Short=CSP-E
 gi|27904309|gb|AAO27142.1| cold shock protein CspA [Buchnera aphidicola str. Bp (Baizongia
          pistaciae)]
          Length = 69

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L+EGQ V ++  +  A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLSEGQSVEFEITEG-AKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVISL 69


>gi|223985451|ref|ZP_03635510.1| hypothetical protein HOLDEFILI_02816 [Holdemania filiformis DSM
          12042]
 gi|223962540|gb|EEF66993.1| hypothetical protein HOLDEFILI_02816 [Holdemania filiformis DSM
          12042]
          Length = 66

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFIT    T+ G DVF+H SA+ + G   L +G+ V+++ VQ+D 
Sbjct: 1  MVTGKVKWFNAEKGYGFIT----TDEGKDVFVHYSAIQTDGFKTLDDGEAVSFEVVQSD- 55

Query: 62 NGKYSAENLKL 72
           G+ +A   KL
Sbjct: 56 RGEQAANVCKL 66


>gi|30249693|ref|NP_841763.1| cold shock DNA-binding domain-containing protein [Nitrosomonas
          europaea ATCC 19718]
 gi|30180730|emb|CAD85642.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718]
          Length = 67

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  +D+F H SA+   G   L EGQ V+++  Q   
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMTGFKTLKEGQKVSFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|331004967|ref|ZP_08328377.1| Cold shock protein [gamma proteobacterium IMCC1989]
 gi|330421209|gb|EGG95465.1| Cold shock protein [gamma proteobacterium IMCC1989]
          Length = 98

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G+D+F H S++   G   L  GQ V++D +  D 
Sbjct: 1  MATGTVKWFNNAKGYGFILPD---DGGEDLFAHYSSIEMDGYKTLKAGQPVSFDTIGGDK 57

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 58 G--LHATNIT 65


>gi|284030059|ref|YP_003379990.1| cold-shock DNA-binding domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283809352|gb|ADB31191.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM
          17836]
          Length = 67

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI+ +G    G DVF+H SA+A+ G   L E Q V +D  Q   
Sbjct: 1  MASGTVKWFNGEKGFGFISQDG---GGADVFVHYSAIATDGFRTLDENQKVEFDLAQGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ V
Sbjct: 58 G--PQAENVRPV 67


>gi|237809065|ref|YP_002893505.1| cold-shock DNA-binding domain-containing protein [Tolumonas
          auensis DSM 9187]
 gi|237501326|gb|ACQ93919.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM
          9187]
          Length = 72

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   E GDD+F H S +   G   L  GQ V ++ VQ   
Sbjct: 1  MATGTVKWFNNAKGFGFICPD---EGGDDIFAHYSTIDMNGYKTLKAGQPVEFE-VQAGP 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G ++     +VP +S 
Sbjct: 57 KGSHA---TSIVPTASQ 70


>gi|84687901|ref|ZP_01015768.1| cold shock family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84664095|gb|EAQ10592.1| cold shock family protein [Rhodobacterales bacterium HTCC2654]
          Length = 68

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H SAV  AG+  L + Q V+Y+ +    
Sbjct: 1  MATGTVKWFNATKGYGFIAPD---DGGKDVFVHISAVERAGMTGLADNQKVSYEMI-PGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA +LK +
Sbjct: 57 DGRESAGDLKAL 68


>gi|303257728|ref|ZP_07343740.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47]
 gi|303257776|ref|ZP_07343787.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47]
 gi|331000987|ref|ZP_08324623.1| putative cold shock domain protein CspD [Parasutterella
          excrementihominis YIT 11859]
 gi|302859458|gb|EFL82538.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47]
 gi|302859698|gb|EFL82777.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47]
 gi|329569762|gb|EGG51526.1| putative cold shock domain protein CspD [Parasutterella
          excrementihominis YIT 11859]
          Length = 67

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFITP+   + G+D+F H SA+   G   L +GQ VT+D  + + 
Sbjct: 1  MATGTVKWFNDAKGYGFITPD---DGGEDLFAHFSAIKMDGFKTLKQGQRVTFDLKEGEK 57

Query: 62 NGKYSAENLK 71
               A+N+K
Sbjct: 58 G--KQADNIK 65


>gi|261341246|ref|ZP_05969104.1| putative cold shock protein [Enterobacter cancerogenus ATCC
          35316]
 gi|288316550|gb|EFC55488.1| putative cold shock protein [Enterobacter cancerogenus ATCC
          35316]
          Length = 69

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   N A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVMAL 69


>gi|254466858|ref|ZP_05080269.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
 gi|206687766|gb|EDZ48248.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
          Length = 69

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE   + G D+F+H SAV  +GL  L + Q VTY+  +   
Sbjct: 1  MATGTVKWFNTTKGYGFIAPE---DGGKDIFVHISAVERSGLTGLADNQKVTYEL-RAGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA ++ LV
Sbjct: 57 DGRESAVDIALV 68


>gi|126739561|ref|ZP_01755253.1| cold-shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
 gi|126719207|gb|EBA15917.1| cold-shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
          Length = 68

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+G      DVF+H SAV  +GL  L + Q VT+D  +   
Sbjct: 1  MASGTVKWFNSTKGYGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVTFDI-EPGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESAVNLAL 67


>gi|307943089|ref|ZP_07658434.1| putative cold shock protein [Roseibium sp. TrichSKD4]
 gi|307773885|gb|EFO33101.1| putative cold shock protein [Roseibium sp. TrichSKD4]
          Length = 69

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KGYGFI PE   +   DVF+H SAV  AG+  L+EGQ V+++ VQ+  
Sbjct: 1  MAIGTVKFFNTTKGYGFIQPE---DGSQDVFVHISAVERAGMTTLSEGQKVSFEVVQDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK +A+ L  V
Sbjct: 58 SGKSAADGLAAV 69


>gi|251790554|ref|YP_003005275.1| cold shock protein CspE [Dickeya zeae Ech1591]
 gi|271499690|ref|YP_003332715.1| cold-shock DNA-binding domain-containing protein [Dickeya
          dadantii Ech586]
 gi|307130032|ref|YP_003882048.1| DNA-binding transcriptional repressor [Dickeya dadantii 3937]
 gi|247539175|gb|ACT07796.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591]
 gi|270343245|gb|ACZ76010.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586]
 gi|306527561|gb|ADM97491.1| DNA-binding transcriptional repressor [Dickeya dadantii 3937]
          Length = 69

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   + A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-SGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|160914188|ref|ZP_02076410.1| hypothetical protein EUBDOL_00197 [Eubacterium dolichum DSM 3991]
 gi|158433999|gb|EDP12288.1| hypothetical protein EUBDOL_00197 [Eubacterium dolichum DSM 3991]
          Length = 66

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFIT    T+ G DVF+H S++ + G   L EGQ VT+D V++D 
Sbjct: 1  MSTGKVKWFNAEKGYGFIT----TDEGKDVFVHYSSINADGFKTLEEGQAVTFDVVESDR 56

Query: 62 NGKYSAENLKL 72
               A N+ +
Sbjct: 57 G--EQAANVTV 65


>gi|147856673|emb|CAN81359.1| hypothetical protein VITISV_040408 [Vitis vinifera]
          Length = 219

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITP+   + GDD+F+H+S++ S G  +L EG+ V +  V++  +G
Sbjct: 5  TGTVKWFNDQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDG 60

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 61 RTKAVDVT 68


>gi|16974805|pdb|1HZB|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
 gi|16974806|pdb|1HZB|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
          Length = 66

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KGYGFI  E     G DVF+H +A+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGPQAANVVK 65


>gi|312962258|ref|ZP_07776750.1| cold-shock protein, DNA-binding [Pseudomonas fluorescens WH6]
 gi|311283595|gb|EFQ62184.1| cold-shock protein, DNA-binding [Pseudomonas fluorescens WH6]
          Length = 67

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFIT +G    G DVF+H SA+ S G   L E Q V ++  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFITQDG---GGADVFVHFSAIQSDGFKTLEENQKVEFEIEQGQK 57

Query: 62 NGKYSAENLKLV 73
               A ++++V
Sbjct: 58 G--PQATSVRVV 67


>gi|46200113|ref|YP_005780.1| cold shock protein [Thermus thermophilus HB27]
 gi|46197741|gb|AAS82153.1| cold shock protein [Thermus thermophilus HB27]
          Length = 85

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  EG T    DVF+H +A+ + G   L EG +VT+D      
Sbjct: 13 MQKGRVKWFNAEKGYGFIEREGDT----DVFVHYTAINAKGFRTLNEGDIVTFDVEPGRN 68

Query: 62 NGKYSAENLKLVPKS 76
               A N+ +V  +
Sbjct: 69 GKGPQAVNVTVVEPA 83


>gi|229099617|ref|ZP_04230545.1| hypothetical protein bcere0020_48350 [Bacillus cereus Rock3-29]
 gi|229105794|ref|ZP_04236423.1| hypothetical protein bcere0019_49200 [Bacillus cereus Rock3-28]
 gi|228677683|gb|EEL31931.1| hypothetical protein bcere0019_49200 [Bacillus cereus Rock3-28]
 gi|228683913|gb|EEL37863.1| hypothetical protein bcere0020_48350 [Bacillus cereus Rock3-29]
          Length = 65

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ V +D V + A G
Sbjct: 2  QGKVKWFNAEKGFGFIERE----DGEDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|92115994|ref|YP_575723.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91798888|gb|ABE61263.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 73

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI P+     G DVF+H SAV  AGL +L EG  V+Y+ V N   G
Sbjct: 9  TGTVKWFNATKGFGFIQPDS---GGKDVFVHISAVERAGLSSLNEGAKVSYEVVAN--RG 63

Query: 64 KYSAENLKL 72
          K SAE+L++
Sbjct: 64 KESAEDLRV 72


>gi|257867783|ref|ZP_05647436.1| cold-shock protein [Enterococcus casseliflavus EC30]
 gi|257874110|ref|ZP_05653763.1| cold-shock protein [Enterococcus casseliflavus EC10]
 gi|257876671|ref|ZP_05656324.1| cold-shock protein [Enterococcus casseliflavus EC20]
 gi|325571022|ref|ZP_08146594.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
 gi|257801866|gb|EEV30769.1| cold-shock protein [Enterococcus casseliflavus EC30]
 gi|257808274|gb|EEV37096.1| cold-shock protein [Enterococcus casseliflavus EC10]
 gi|257810837|gb|EEV39657.1| cold-shock protein [Enterococcus casseliflavus EC20]
 gi|325156107|gb|EGC68293.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
          Length = 66

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFIT +     GDDVF+H SA+   G  +L EGQ V +  V+  A
Sbjct: 1  MEHGKVKWFNNEKGFGFITVD----GGDDVFVHFSAIQGDGFKSLEEGQEVEFTIVEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +AE  K+
Sbjct: 56 RGPQAAEVTKV 66


>gi|75759683|ref|ZP_00739766.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|74492830|gb|EAO55963.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
          Length = 77

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 14 QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 68

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 69 PQAANVVKL 77


>gi|78067321|ref|YP_370090.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
          383]
 gi|107023458|ref|YP_621785.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia AU 1054]
 gi|116690540|ref|YP_836163.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia HI2424]
 gi|170733881|ref|YP_001765828.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|254247419|ref|ZP_04940740.1| Cold shock protein [Burkholderia cenocepacia PC184]
 gi|77968066|gb|ABB09446.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
 gi|105893647|gb|ABF76812.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          AU 1054]
 gi|116648629|gb|ABK09270.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          HI2424]
 gi|124872195|gb|EAY63911.1| Cold shock protein [Burkholderia cenocepacia PC184]
 gi|169817123|gb|ACA91706.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          MC0-3]
          Length = 67

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D VQ   
Sbjct: 1  MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAITMNGFKTLKEGQKVSFDVVQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|16127133|ref|NP_421697.1| cold-shock domain-contain protein [Caulobacter crescentus CB15]
 gi|221235933|ref|YP_002518370.1| cold shock protein [Caulobacter crescentus NA1000]
 gi|13424521|gb|AAK24865.1| cold-shock domain family protein [Caulobacter crescentus CB15]
 gi|220965106|gb|ACL96462.1| cold shock protein [Caulobacter crescentus NA1000]
          Length = 69

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G D+F+H SAV  +GL +L EGQ ++Y+   +  
Sbjct: 1  MATGTVKWFNSTKGFGFIQPD---NGGADIFVHISAVERSGLGSLNEGQKISYEPEVDRR 57

Query: 62 NGKYSAENLK 71
          +GK SA  L+
Sbjct: 58 SGKTSAGQLQ 67


>gi|283479166|emb|CAY75082.1| Cold shock-like protein cspE (CSP-E) [Erwinia pyrifoliae DSM
          12163]
          Length = 79

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   N A G
Sbjct: 15 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 70

Query: 64 KYSAEN 69
            +A  
Sbjct: 71 PSAANV 76


>gi|163814818|ref|ZP_02206207.1| hypothetical protein COPEUT_00969 [Coprococcus eutactus ATCC
          27759]
 gi|158450453|gb|EDP27448.1| hypothetical protein COPEUT_00969 [Coprococcus eutactus ATCC
          27759]
          Length = 71

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI+ +   E+G DVF+H SA+ + G   L EGQ V++D   +  
Sbjct: 1  MKNGTVKWFNGEKGYGFISDD---ETGKDVFVHFSAINADGYKTLNEGQKVSFDVEADPK 57

Query: 62 NG-KYSAENLKLV 73
          +  K  A N+ +V
Sbjct: 58 DASKERATNVTVV 70


>gi|226227592|ref|YP_002761698.1| cold shock protein [Gemmatimonas aurantiaca T-27]
 gi|226090783|dbj|BAH39228.1| cold shock protein [Gemmatimonas aurantiaca T-27]
          Length = 69

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KG+GFITP   ++   D F+H SA+   G  +LTEG+ V +D VQ  
Sbjct: 1  MRTTGTVKWFNDAKGFGFITP---SDGQKDCFVHHSAIQGNGFKSLTEGETVEFDIVQGQ 57

Query: 61 ANGKYSAENLK 71
               +AEN+ 
Sbjct: 58 KG--PAAENVT 66


>gi|116334505|ref|YP_796032.1| cold shock protein [Lactobacillus brevis ATCC 367]
 gi|116099852|gb|ABJ65001.1| cold-shock DNA-binding protein family [Lactobacillus brevis ATCC
          367]
          Length = 67

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKGYGFIT     E+G DVF+H SA+ S G   L EGQ V+ D  Q D 
Sbjct: 1  MEQGTVKWFNADKGYGFIT----LENGSDVFVHFSAINSEGFKTLEEGQHVSLDVEQGDR 56

Query: 62 NGKYSAENLKLV 73
               A N+ +V
Sbjct: 57 G--PQAANVSVV 66


>gi|145595639|ref|YP_001159936.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440]
 gi|159038893|ref|YP_001538146.1| cold-shock DNA-binding domain-containing protein [Salinispora
          arenicola CNS-205]
 gi|145304976|gb|ABP55558.1| cold-shock DNA-binding protein family [Salinispora tropica
          CNB-440]
 gi|157917728|gb|ABV99155.1| cold-shock DNA-binding domain protein [Salinispora arenicola
          CNS-205]
          Length = 67

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H S+++ +G   L+EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIEQDG---GGPDVFVHYSSISMSGYRELSEGQKVDFDVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+N++ +
Sbjct: 58 G--PQADNVRPM 67


>gi|21230743|ref|NP_636660.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          ATCC 33913]
 gi|21242090|ref|NP_641672.1| cold shock protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|66769261|ref|YP_244023.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          8004]
 gi|78046945|ref|YP_363120.1| cold shock protein [Xanthomonas campestris pv. vesicatoria str.
          85-10]
 gi|84623422|ref|YP_450794.1| cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|166712821|ref|ZP_02244028.1| cold shock protein [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|188577268|ref|YP_001914197.1| hypothetical protein PXO_01731 [Xanthomonas oryzae pv. oryzae
          PXO99A]
 gi|188992412|ref|YP_001904422.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          B100]
 gi|289662812|ref|ZP_06484393.1| cold shock protein [Xanthomonas campestris pv. vasculorum
          NCPPB702]
 gi|289670308|ref|ZP_06491383.1| cold shock protein [Xanthomonas campestris pv. musacearum
          NCPPB4381]
 gi|325915841|ref|ZP_08178140.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325926981|ref|ZP_08188256.1| cold-shock DNA-binding protein family [Xanthomonas perforans
          91-118]
 gi|21107498|gb|AAM36208.1| cold shock protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21112338|gb|AAM40584.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          ATCC 33913]
 gi|66574593|gb|AAY50003.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          8004]
 gi|78035375|emb|CAJ23020.1| cold shock protein [Xanthomonas campestris pv. vesicatoria str.
          85-10]
 gi|84367362|dbj|BAE68520.1| cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|167734172|emb|CAP52380.1| cold shock protein [Xanthomonas campestris pv. campestris]
 gi|188521720|gb|ACD59665.1| conserved domain protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|325537962|gb|EGD09659.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325542640|gb|EGD14107.1| cold-shock DNA-binding protein family [Xanthomonas perforans
          91-118]
          Length = 68

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+PE   +   DVF H SA+ S G  +L EGQ V+YD  Q   
Sbjct: 1  MPNGTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVSYDVTQGPK 57

Query: 62 NGKYSAENLKLVP 74
               A N+  V 
Sbjct: 58 G--AQASNITPVE 68


>gi|238795829|ref|ZP_04639342.1| Cold shock-like protein cspD [Yersinia mollaretii ATCC 43969]
 gi|238720292|gb|EEQ12095.1| Cold shock-like protein cspD [Yersinia mollaretii ATCC 43969]
          Length = 85

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  +   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHEGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|16126859|ref|NP_421423.1| cold-shock domain-contain protein [Caulobacter crescentus CB15]
 gi|221235641|ref|YP_002518078.1| cold shock protein [Caulobacter crescentus NA1000]
 gi|13424199|gb|AAK24591.1| cold-shock domain family protein [Caulobacter crescentus CB15]
 gi|220964814|gb|ACL96170.1| cold shock protein [Caulobacter crescentus NA1000]
          Length = 69

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+NP KG+GFI PE   + G DVF+H +AV  +GL  L EG  V Y+  ++  
Sbjct: 1  MANGVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK SA NL+++
Sbjct: 58 SGKTSAGNLRIL 69


>gi|330502213|ref|YP_004379082.1| cold-shock DNA-binding protein family protein [Pseudomonas
           mendocina NK-01]
 gi|328916499|gb|AEB57330.1| cold-shock DNA-binding protein family protein [Pseudomonas
           mendocina NK-01]
          Length = 204

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++KW+N  KG+GFI+ +    SG+D+F+H  A+   G   L EGQ V +  +Q D 
Sbjct: 134 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRVLIEGQRVEFSVMQRDK 189

Query: 62  NGKYSAENL 70
                AE++
Sbjct: 190 G--LQAEDV 196


>gi|296444335|ref|ZP_06886300.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
 gi|296257982|gb|EFH05044.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
          Length = 70

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+     G DVF+H SAV  AGL  L EGQ ++Y+ V +  
Sbjct: 1  MQTGVVKWFNSQKGFGFIQPDS---GGADVFVHISAVERAGLRGLAEGQKISYETVIDKR 57

Query: 62 NGKYSAENLKL 72
          +GK SA+ L++
Sbjct: 58 SGKSSADQLQV 68


>gi|95929691|ref|ZP_01312433.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
 gi|95134388|gb|EAT16045.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
          Length = 66

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +    +G DVF+H SA+ S G  +L EG  V++D  +   
Sbjct: 1  MAEGTVKWFNDTKGFGFIEQD----NGPDVFVHFSAIQSEGFKSLAEGDRVSFDVTEGQ- 55

Query: 62 NGKYSAENLKL 72
           G  SA   K+
Sbjct: 56 KGPQSANVCKI 66


>gi|332283953|ref|YP_004415864.1| cold-shock protein [Pusillimonas sp. T7-7]
 gi|330427906|gb|AEC19240.1| cold-shock protein [Pusillimonas sp. T7-7]
          Length = 80

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITP+     G+D+F H S++   G   L EGQ V ++  Q    G
Sbjct: 16 TGTVKWFNDAKGFGFITPD---NGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIAQG-PKG 71

Query: 64 KYS 66
          K +
Sbjct: 72 KQA 74


>gi|291295051|ref|YP_003506449.1| cold-shock DNA-binding domain-containing protein [Meiothermus
          ruber DSM 1279]
 gi|290470010|gb|ADD27429.1| cold-shock DNA-binding domain protein [Meiothermus ruber DSM
          1279]
          Length = 75

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  E   E   DVF+H SA+ S G   L EG +VT++      
Sbjct: 1  MQKGKVKWFNAEKGYGFIQRE---EGEPDVFVHYSAIQSRGFRTLNEGDVVTFEIEPGKN 57

Query: 62 NGKYSAENLKLVPKS 76
               A N+ +V  +
Sbjct: 58 GKGPQAANVSVVEPA 72


>gi|329295571|ref|ZP_08252907.1| cold shock protein CspE [Plautia stali symbiont]
          Length = 69

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   + A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-DGAKG 60

Query: 64 KYSAENLKL 72
            +A    L
Sbjct: 61 PSAANVTAL 69


>gi|270291153|ref|ZP_06197376.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus
          acidilactici 7_4]
 gi|270280549|gb|EFA26384.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus
          acidilactici 7_4]
          Length = 66

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFIT E     G DVF+H SA+ S G   L EGQ V++D  ++D 
Sbjct: 1  MEQGTVKWFNADKGFGFITRE----DGSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESDR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQAVNVE 64


>gi|238762119|ref|ZP_04623092.1| Cold shock-like protein cspD [Yersinia kristensenii ATCC 33638]
 gi|238699847|gb|EEP92591.1| Cold shock-like protein cspD [Yersinia kristensenii ATCC 33638]
          Length = 85

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  +   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHEGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|311743915|ref|ZP_07717721.1| CspA family cold shock transcriptional regulator [Aeromicrobium
          marinum DSM 15272]
 gi|311313045|gb|EFQ82956.1| CspA family cold shock transcriptional regulator [Aeromicrobium
          marinum DSM 15272]
          Length = 67

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFI P+G    G+D+F H S++A++G  +L E Q V +D  Q   
Sbjct: 1  MATGTVKWFNADKGFGFIAPDG---GGEDLFAHFSSIAASGFRSLDENQKVEFDVEQGQK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--LQAANIRPL 67


>gi|298292879|ref|YP_003694818.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296929390|gb|ADH90199.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 70

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G D F+H SAV  AG+ +L EGQ V ++ V +  
Sbjct: 1  MTTGTVKWFNSQKGFGFIAPD---DGGSDAFVHISAVERAGMSDLREGQKVDFELVADQR 57

Query: 62 NGKYSAENLK 71
          +GK SA+ L+
Sbjct: 58 SGKMSADKLQ 67


>gi|228923915|ref|ZP_04087192.1| hypothetical protein bthur0011_48890 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228835714|gb|EEM81078.1| hypothetical protein bthur0011_48890 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
          Length = 65

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ V +D V + A G
Sbjct: 2  QGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGFKSLEEGQQVEFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|227329249|ref|ZP_03833273.1| cold shock-like protein [Pectobacterium carotovorum subsp.
          carotovorum WPP14]
          Length = 73

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    GDD+F H S +   G   L  GQ+V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|308172349|ref|YP_003919054.1| cold-shock protein [Bacillus amyloliquefaciens DSM 7]
 gi|307605213|emb|CBI41584.1| cold-shock protein [Bacillus amyloliquefaciens DSM 7]
 gi|328552171|gb|AEB22663.1| cold-shock protein [Bacillus amyloliquefaciens TA208]
 gi|328910438|gb|AEB62034.1| cold-shock protein [Bacillus amyloliquefaciens LL3]
          Length = 66

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E    +GDDVF+H SA+ S G  +L EGQ VT+D  Q  A
Sbjct: 1  MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQG-A 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGAQAANVQK 65


>gi|291303552|ref|YP_003514830.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia
          nassauensis DSM 44728]
 gi|290572772|gb|ADD45737.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis
          DSM 44728]
          Length = 66

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +GS+KW+N +KGYGF+  +     G+DVF+H SA+ + G  +L +GQ V +D  Q   
Sbjct: 1  MAQGSVKWFNAEKGYGFLAVD----GGEDVFVHFSAIQADGYRSLEDGQRVEFDIAQGQK 56

Query: 62 NGKYSAENLKLV 73
               AEN+++V
Sbjct: 57 G--PQAENVRIV 66


>gi|218670224|ref|ZP_03519895.1| probable cold shock protein [Rhizobium etli GR56]
          Length = 69

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + +D  ++  
Sbjct: 1  MTTGTVKWFNSTKGFGFIQPD---NGGTDAFVHISAVERAGMRELVEGQKIGFDLERDHK 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKMSACNLQ 67


>gi|163735233|ref|ZP_02142668.1| cold shock protein CspA [Roseobacter litoralis Och 149]
 gi|161391447|gb|EDQ15781.1| cold shock protein CspA [Roseobacter litoralis Och 149]
          Length = 68

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G      DVF+H SAV  AGL  L + Q VT+D  ++  
Sbjct: 1  MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLADNQKVTFDI-EDGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N+ L
Sbjct: 57 DGRQSATNIAL 67


>gi|86156680|ref|YP_463465.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|197120682|ref|YP_002132633.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|220915394|ref|YP_002490698.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85773191|gb|ABC80028.1| cold-shock DNA-binding protein family [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|196170531|gb|ACG71504.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|219953248|gb|ACL63632.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 67

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +   + G+DVF H SA++  G  +L EGQ V +D V+   
Sbjct: 1  MATGTVKWFNDAKGFGFITQD---DGGEDVFCHYSAISGDGFKSLAEGQKVEFDVVKG-P 56

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 57 KGLQAANVRKV 67


>gi|319653292|ref|ZP_08007394.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
 gi|317395213|gb|EFV75949.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
          Length = 66

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI      E G+DVF+H SA+ S G  +L EGQ V+++ V+  A
Sbjct: 1  MKNGKVKWFNAEKGFGFIE----GEDGNDVFVHYSAIQSEGFKSLEEGQEVSFEVVEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAANVTKL 66


>gi|222082689|ref|YP_002542054.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221727368|gb|ACM30457.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 74

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KG+GFI P+   + G D F+H SAV  AG+  + EGQ + Y+  +++
Sbjct: 5  IMTTGTVKWFNSTKGFGFIQPD---DGGADAFVHISAVERAGMREIVEGQKIAYELERDN 61

Query: 61 ANGKYSAENLK 71
           +GK SA NL+
Sbjct: 62 KSGKLSACNLQ 72


>gi|56695352|ref|YP_165700.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
 gi|56677089|gb|AAV93755.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
          Length = 68

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   E G DVF+H SAV  +GL  L + Q V+Y+  +   
Sbjct: 1  MATGTVKWFNTTKGFGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYEL-KPGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA +LKL+
Sbjct: 57 DGRESAVDLKLL 68


>gi|91776492|ref|YP_546248.1| cold-shock DNA-binding protein family protein [Methylobacillus
          flagellatus KT]
 gi|91710479|gb|ABE50407.1| cold-shock DNA-binding protein family [Methylobacillus
          flagellatus KT]
          Length = 67

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H SA+  AG  +L EGQ V++D  +   
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVEAGYKSLKEGQRVSFDVTEGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|158312417|ref|YP_001504925.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
          EAN1pec]
 gi|158107822|gb|ABW10019.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
          Length = 67

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +G    G DVF+H SA+ SAG  +L E Q V +D  Q   
Sbjct: 1  MAQGTVKWFNGEKGFGFIAQDG---GGPDVFVHYSAIDSAGFRSLDENQRVEFDVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               AE+++ V
Sbjct: 58 G--PQAEHVRPV 67


>gi|289628626|ref|ZP_06461580.1| cold-shock protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651512|ref|ZP_06482855.1| cold-shock protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868605|gb|EGH03314.1| cold-shock protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 202

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 135 TGTVKWFNASKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 190 LQAEDVIAALPR 201


>gi|239636591|ref|ZP_04677593.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239637686|ref|ZP_04678656.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239596711|gb|EEQ79238.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239597946|gb|EEQ80441.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|330684330|gb|EGG96063.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121]
 gi|330684668|gb|EGG96370.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E     G DVF+H SA+A  G  +L EGQ V +D V+ D 
Sbjct: 1  MNNGTVKWFNSEKGFGFIERE----DGSDVFVHFSAIAEEGYKSLEEGQKVEFDIVEGD- 55

Query: 62 NGKYSAENLKL 72
           G+ +A  +K+
Sbjct: 56 RGEQAANVVKM 66


>gi|156934624|ref|YP_001438540.1| hypothetical protein ESA_02458 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532878|gb|ABU77704.1| hypothetical protein ESA_02458 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 76

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQVVRFDVHQG-P 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G +++  + L  ++++
Sbjct: 57 KGNHASVIVPLEAEAAS 73


>gi|146337756|ref|YP_001202804.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
 gi|146190562|emb|CAL74564.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
          Length = 68

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI P    + G+DVF+H SAV  AGL  L EGQ + YD   +   G
Sbjct: 2  QGTVKWFNGQKGFGFIQP---QDGGNDVFVHISAVERAGLAGLAEGQKLNYDVKTDKMRG 58

Query: 64 KYSAENLKLV 73
          K SAENL L+
Sbjct: 59 KTSAENLSLI 68


>gi|328957137|ref|YP_004374523.1| cold shock protein CspA [Carnobacterium sp. 17-4]
 gi|328673461|gb|AEB29507.1| cold shock protein CspA [Carnobacterium sp. 17-4]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ V ++ V+ + 
Sbjct: 1  MEKGTVKWFNAEKGFGFIEVE----GGEDVFVHFSAITGDGFKSLEEGQAVEFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGAQAANVVKL 66


>gi|289643269|ref|ZP_06475394.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
 gi|289506909|gb|EFD27883.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ +G    G DVF+H SA+   G  +L EGQ V +   Q   
Sbjct: 1  MAQGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIDMDGYKSLEEGQRVEFQVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+ +++V
Sbjct: 58 G--PQADAVRVV 67


>gi|253995969|ref|YP_003048033.1| cold-shock DNA-binding domain-containing protein [Methylotenera
          mobilis JLW8]
 gi|253982648|gb|ACT47506.1| cold-shock DNA-binding domain protein [Methylotenera mobilis
          JLW8]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H SA+  +G  +L EGQ V++D  +   
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVESGYKSLKEGQRVSFDLTEGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|95928508|ref|ZP_01311255.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
 gi|95135298|gb|EAT16950.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +GS+KW+N  KG+GFI  +     G DVF+H SA+   G  +L EG  V ++   +  
Sbjct: 1  MAQGSVKWFNDAKGFGFIEQD----GGPDVFVHFSAIQGDGFKSLAEGDRVEFEIT-DGQ 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 KGPQAANVIKL 66


>gi|304406586|ref|ZP_07388242.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304344644|gb|EFM10482.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G DVF+H SA+   G   L EGQ V ++ VQ + 
Sbjct: 1  MQQGTVKWFNAEKGFGFIEVE----GGSDVFVHFSAIQGEGFKTLDEGQRVEFNVVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQAENVVKL 66


>gi|71908706|ref|YP_286293.1| cold-shock DNA-binding protein family protein [Dechloromonas
          aromatica RCB]
 gi|71848327|gb|AAZ47823.1| cold-shock DNA-binding protein family [Dechloromonas aromatica
          RCB]
          Length = 72

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  +D+F H SA+   G   L EGQ V++D VQ   
Sbjct: 6  MAIGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMNGFKTLKEGQKVSFDVVQGPK 62

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 63 G--KQASNIQ 70


>gi|16077579|ref|NP_388393.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308339|ref|ZP_03590186.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312661|ref|ZP_03594466.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. NCIB
          3610]
 gi|221317584|ref|ZP_03598878.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321860|ref|ZP_03603154.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321314161|ref|YP_004206448.1| cold-shock protein [Bacillus subtilis BSn5]
 gi|729220|sp|P39158|CSPC_BACSU RecName: Full=Cold shock protein CspC
 gi|1230546|dbj|BAA04956.1| cold shock protein [Bacillus subtilis]
 gi|1881321|dbj|BAA19348.1| COLD SHOCK PROTEIN [Bacillus subtilis]
 gi|2393787|gb|AAC45646.1| cold shock protein C [Bacillus subtilis]
 gi|2632812|emb|CAB12319.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482931|dbj|BAI84006.1| cold-shock protein [Bacillus subtilis subsp. natto BEST195]
 gi|320020435|gb|ADV95421.1| cold-shock protein [Bacillus subtilis BSn5]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E    +GDDVF+H SA+ S G  +L EGQ V++D  Q  A
Sbjct: 1  MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSDGFKSLDEGQKVSFDVEQG-A 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGAQAANVQK 65


>gi|300722306|ref|YP_003711591.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Xenorhabdus nematophila ATCC 19061]
 gi|297628808|emb|CBJ89386.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Xenorhabdus nematophila ATCC 19061]
          Length = 69

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S+G   L EGQ V ++  + D  G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIKSSGFKTLAEGQKVEFEITEGD-KG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVVAI 69


>gi|302829474|ref|XP_002946304.1| nucleic acid binding protein [Volvox carteri f. nagariensis]
 gi|121077603|gb|ABM47305.1| nucleic acid binding protein [Volvox carteri f. nagariensis]
 gi|300269119|gb|EFJ53299.1| nucleic acid binding protein [Volvox carteri f. nagariensis]
          Length = 242

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  RG++KW+N  KG+GFITPEG    G+D F+H++ + S G  +L EG+ V ++ V+  
Sbjct: 5  LRQRGTVKWFNATKGFGFITPEG---GGEDFFVHQTNINSDGFRSLREGEAVEFE-VEAG 60

Query: 61 ANGKYSAENLK 71
           +G+  A ++ 
Sbjct: 61 PDGRSKAVSVS 71


>gi|320527168|ref|ZP_08028355.1| major cold shock protein CspA [Solobacterium moorei F0204]
 gi|320132496|gb|EFW25039.1| major cold shock protein CspA [Solobacterium moorei F0204]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFIT    T+ G DVF+H SA+ S G   L EG  V++D  +++ 
Sbjct: 1  MATGKVKWFNAEKGYGFIT----TDEGKDVFVHYSAIQSEGFKTLDEGAAVSFDITESN- 55

Query: 62 NGKYSAENLKL 72
           G  ++   KL
Sbjct: 56 RGPQASNVTKL 66


>gi|315649820|ref|ZP_07902903.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|315274794|gb|EFU38175.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
          Length = 65

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     TE G DVF+H SA+ S G   L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFIE----TEDGGDVFVHFSAIQSEGFKTLEEGQSVEFEIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +K+
Sbjct: 57 PQAANVIKI 65


>gi|237746974|ref|ZP_04577454.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
          HOxBLS]
 gi|229378325|gb|EEO28416.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
          HOxBLS]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITPE   + G+D+F H SA+  +G   L EGQ V ++  Q   
Sbjct: 1  MATGTVKWFNDSKGFGFITPE---DGGEDLFAHFSAINMSGFKTLKEGQKVQFEVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 58 G--KQASNIQSV 67


>gi|319786935|ref|YP_004146410.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317465447|gb|ADV27179.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 68

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+PE   +   DVF H SA+ + G  +L EGQ V+Y+  Q   
Sbjct: 1  MANGTVKWFNDAKGFGFISPE---DGSADVFAHFSAINAKGFRSLREGQRVSYEVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--AQASNITPL 67


>gi|296127882|ref|YP_003635132.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
 gi|296019697|gb|ADG72933.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P   ++   DVF H SA+AS+G   L E Q V ++  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAP---SDGSADVFAHYSAIASSGFRTLEENQQVEFEVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               A +++ +
Sbjct: 58 G--LQASDIRPL 67


>gi|253998300|ref|YP_003050363.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. SIP3-4]
 gi|255599837|ref|XP_002537322.1| cold shock domain containing proteins, putative [Ricinus
          communis]
 gi|313200374|ref|YP_004039032.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. MP688]
 gi|223516741|gb|EEF25061.1| cold shock domain containing proteins, putative [Ricinus
          communis]
 gi|253984979|gb|ACT49836.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4]
 gi|312439690|gb|ADQ83796.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H SA+  +G  +L EGQ V++D  +   
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVESGYKSLKEGQRVSFDVTEGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|152977181|ref|YP_001376698.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152025933|gb|ABS23703.1| putative cold-shock DNA-binding domain protein [Bacillus
          cytotoxicus NVH 391-98]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     GDDVF+H SA+ S G   L EGQ V+++ V+ + 
Sbjct: 1  MQTGKVKWFNSEKGFGFIEVE----GGDDVFVHFSAIQSEGFKTLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|238790450|ref|ZP_04634220.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
 gi|238721476|gb|EEQ13146.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
          Length = 69

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++     A G
Sbjct: 5  KGSVKWFNEAKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFEIT-TGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|56962604|ref|YP_174330.1| cold shock protein CspC [Bacillus clausii KSM-K16]
 gi|56908842|dbj|BAD63369.1| cold shock protein CspC [Bacillus clausii KSM-K16]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     GDDVF+H SA+ S G  +L EGQ V++D  Q  A
Sbjct: 1  MEQGTVKWFNAEKGFGFIERE----DGDDVFVHFSAIQSEGFKSLDEGQKVSFDIEQG-A 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGAQAANVQK 65


>gi|330965607|gb|EGH65867.1| cold shock domain family protein [Pseudomonas syringae pv.
          actinidiae str. M302091]
          Length = 94

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G  +  +D+F H SA+   G   L  GQ V++D +Q   
Sbjct: 3  MLNGKVKWFNNAKGYGFILEDGKPD--EDLFAHFSAIQMDGYKTLKAGQPVSFDIIQGPK 60

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 61 G--LHAVNIQ 68


>gi|291615324|ref|YP_003525481.1| cold-shock DNA-binding domain protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291585436|gb|ADE13094.1| cold-shock DNA-binding domain protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 68

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP   +  GDD+F H SA+ S+G   LTEGQ V++D      
Sbjct: 1  MATGTVKWFNDSKGFGFITP---SNGGDDLFAHFSAIQSSGFKTLTEGQQVSFDITAGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--QQASNIR 65


>gi|253573284|ref|ZP_04850627.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846812|gb|EES74817.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 65

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI  E     G+DVF+H SA+   G   L EGQ V ++   +   G
Sbjct: 2  KGTVKWFNAEKGYGFIQVE----GGEDVFVHFSAIQGEGFKTLEEGQAVEFEIT-DGNRG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|146340323|ref|YP_001205371.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
 gi|146193129|emb|CAL77140.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
          Length = 69

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          ++GS+KW+NP KGYGFI P G      DVF+H SAV  AGL  L E Q + YD V++   
Sbjct: 4  YKGSVKWFNPTKGYGFIKPTGGD---KDVFVHISAVERAGLTTLNENQAIEYDLVES--R 58

Query: 63 GKYSAENLKL 72
          GK SAENLKL
Sbjct: 59 GKTSAENLKL 68


>gi|311895414|dbj|BAJ27822.1| putative cold shock protein [Kitasatospora setae KM-6054]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI  +G    G DVF H S + S G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNSEKGYGFIEQDG---GGADVFAHYSNIQSTGFRELIEGQKVEFDVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPI 67


>gi|229102298|ref|ZP_04233007.1| Cold shock-like protein cspB [Bacillus cereus Rock3-28]
 gi|228681199|gb|EEL35367.1| Cold shock-like protein cspB [Bacillus cereus Rock3-28]
          Length = 77

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  +G+    DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 14 QGKVKWFNNEKGFGFIEMDGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 68

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 69 PQAANVVKL 77


>gi|85704998|ref|ZP_01036098.1| cold shock family protein [Roseovarius sp. 217]
 gi|149202366|ref|ZP_01879339.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
 gi|85670320|gb|EAQ25181.1| cold shock family protein [Roseovarius sp. 217]
 gi|149144464|gb|EDM32495.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
          Length = 68

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+G    G DVF+H SAV  +GL  L + Q V ++  Q   
Sbjct: 1  MPTGTVKWFNTTKGYGFIAPDG---GGKDVFVHISAVERSGLTGLADNQKVGFEL-QEGR 56

Query: 62 NGKYSAENLKLV 73
          +G+  A +L+L+
Sbjct: 57 DGRQMASDLRLL 68


>gi|333027864|ref|ZP_08455928.1| putative cold shock protein [Streptomyces sp. Tu6071]
 gi|332747716|gb|EGJ78157.1| putative cold shock protein [Streptomyces sp. Tu6071]
          Length = 86

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +AS+G   L EGQ V +D  Q   
Sbjct: 19 MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIASSGFRELIEGQKVEFDVTQGQK 75

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 76 G--LQAENIT 83


>gi|269125062|ref|YP_003298432.1| cold-shock DNA-binding domain-containing protein [Thermomonospora
          curvata DSM 43183]
 gi|268310020|gb|ACY96394.1| cold-shock DNA-binding domain protein [Thermomonospora curvata
          DSM 43183]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L +GQ V ++   ++ 
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGRDVFVHYSAILMDGYRTLEQGQRVEFEIAHSER 56

Query: 62 NGKYSAENLKLV 73
               AE+++ +
Sbjct: 57 G--PQAESVRTL 66


>gi|225181189|ref|ZP_03734635.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
 gi|225168158|gb|EEG76963.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI        GDDVF+H SA+ S G   L EGQ V ++ V+ +   
Sbjct: 2  QGKVKWFNAEKGFGFIE----RSDGDDVFVHFSAIQSEGFKTLEEGQTVEFEVVEGNRG- 56

Query: 64 KYSAENLKLVP 74
             A N+ +VP
Sbjct: 57 -LQAANVTVVP 66


>gi|226944903|ref|YP_002799976.1| cold shock protein, CspD [Azotobacter vinelandii DJ]
 gi|226719830|gb|ACO79001.1| cold shock protein, CspD [Azotobacter vinelandii DJ]
          Length = 92

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G  E   D+F H SA+   G   L  GQ VT++ +Q   
Sbjct: 1  MLSGKVKWFNNAKGYGFIVADGRDE---DLFAHYSAIQMDGYKTLKAGQAVTFELLQGPK 57

Query: 62 NGKYSAENLKLVP 74
               A N+   P
Sbjct: 58 G--LHAINIHPCP 68


>gi|259502488|ref|ZP_05745390.1| cold-shock domain family protein [Lactobacillus antri DSM 16041]
 gi|259169631|gb|EEW54126.1| cold-shock domain family protein [Lactobacillus antri DSM 16041]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKGYGFI+ E    SGDDVF+H SA+   G  +L EGQ VT+D  + D 
Sbjct: 1  MEQGTVKWFNNDKGYGFISRE----SGDDVFVHFSAIQGEGFKSLDEGQKVTFDVEEGD- 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGLQAVNVVK 65


>gi|134098028|ref|YP_001103689.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|291007208|ref|ZP_06565181.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|133910651|emb|CAM00764.1| cold-shock DNA-binding domain protein [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+G    G DVF+H SA+   G   L E Q VT++  Q   
Sbjct: 1  MAQGTVKWFNSEKGFGFIAPDG---GGADVFVHYSAIEGNGFRTLEENQTVTFEITQGQK 57

Query: 62 NGKYSAENLKLV 73
               A  +++V
Sbjct: 58 G--PQASGVRVV 67


>gi|15595653|ref|NP_249147.1| cold-shock protein [Pseudomonas aeruginosa PAO1]
 gi|107099440|ref|ZP_01363358.1| hypothetical protein PaerPA_01000452 [Pseudomonas aeruginosa
          PACS2]
 gi|116054185|ref|YP_788629.1| putative cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152984051|ref|YP_001345954.1| putative cold-shock protein [Pseudomonas aeruginosa PA7]
 gi|218889196|ref|YP_002438060.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58]
 gi|254237314|ref|ZP_04930637.1| hypothetical protein PACG_03384 [Pseudomonas aeruginosa C3719]
 gi|254243552|ref|ZP_04936874.1| hypothetical protein PA2G_04371 [Pseudomonas aeruginosa 2192]
 gi|296386954|ref|ZP_06876453.1| putative cold-shock protein [Pseudomonas aeruginosa PAb1]
 gi|313111918|ref|ZP_07797708.1| putative major cold shock protein [Pseudomonas aeruginosa 39016]
 gi|9946316|gb|AAG03845.1|AE004483_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1]
 gi|115589406|gb|ABJ15421.1| putative major cold shock protein [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126169245|gb|EAZ54756.1| hypothetical protein PACG_03384 [Pseudomonas aeruginosa C3719]
 gi|126196930|gb|EAZ60993.1| hypothetical protein PA2G_04371 [Pseudomonas aeruginosa 2192]
 gi|150959209|gb|ABR81234.1| probable cold-shock protein [Pseudomonas aeruginosa PA7]
 gi|218769419|emb|CAW25179.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58]
 gi|310884210|gb|EFQ42804.1| putative major cold shock protein [Pseudomonas aeruginosa 39016]
          Length = 69

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFITPE    SG DVF+H  A+   G   L EGQ V+++ VQ   
Sbjct: 3  RQNGTVKWFNETKGYGFITPE----SGPDVFVHFRAIEGNGFKTLAEGQKVSFEVVQGQK 58

Query: 62 NGKYSAENLKLV 73
               AE ++++
Sbjct: 59 G--MQAERVQVI 68


>gi|251798553|ref|YP_003013284.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
 gi|247546179|gb|ACT03198.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E    +GDDVF+H SA+ S G  +L EGQ V ++ V+   
Sbjct: 1  METGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSEGFKSLDEGQRVEFNVVKGQ- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQAENVVKL 66


>gi|188586832|ref|YP_001918377.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179351519|gb|ACB85789.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 65

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N D+GYGFI  +     GDDVF+H SA+   G   L +GQ V ++ V+    G
Sbjct: 2  QGKVKWFNADRGYGFIERD----GGDDVFVHYSAIQEEGFKTLEDGQDVEFEIVEG-PRG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|167745412|ref|ZP_02417539.1| hypothetical protein ANACAC_00103 [Anaerostipes caccae DSM 14662]
 gi|317473040|ref|ZP_07932340.1| cold-shock DNA-binding domain-containing protein [Anaerostipes
          sp. 3_2_56FAA]
 gi|167655133|gb|EDR99262.1| hypothetical protein ANACAC_00103 [Anaerostipes caccae DSM 14662]
 gi|316899469|gb|EFV21483.1| cold-shock DNA-binding domain-containing protein [Anaerostipes
          sp. 3_2_56FAA]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KGYGFI+ E     GDDVF+H SA++  G   L EGQ V+++  +   
Sbjct: 1  MNTGTVKWFNSEKGYGFISQE----GGDDVFVHFSAISGDGFKTLEEGQQVSFEIAEGPR 56

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 57 G--KQAENVSKL 66


>gi|291613435|ref|YP_003523592.1| cold-shock DNA-binding domain protein [Sideroxydans
          lithotrophicus ES-1]
 gi|291583547|gb|ADE11205.1| cold-shock DNA-binding domain protein [Sideroxydans
          lithotrophicus ES-1]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  +D+F H SA+  +G  +L EGQ VT++ VQ   
Sbjct: 1  MANGTVKWFNDAKGFGFITPD---DGSEDLFAHFSAINMSGFKSLKEGQKVTFEVVQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|229544073|ref|ZP_04433132.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
 gi|229325212|gb|EEN90888.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  E     G DVF+H SA+   G   L EGQ V++D  + + 
Sbjct: 1  MEQGKVKWFNSEKGYGFIERE----GGSDVFVHFSAIQGEGFKTLEEGQSVSFDIEEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAANVSKL 66


>gi|188025725|ref|ZP_02959593.2| hypothetical protein PROSTU_01464 [Providencia stuartii ATCC
          25827]
 gi|188020258|gb|EDU58298.1| hypothetical protein PROSTU_01464 [Providencia stuartii ATCC
          25827]
          Length = 81

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++  +  A G
Sbjct: 17 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIASEGFKTLAEGQKVEFEITEG-AKG 72

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 73 PSAVNVVSL 81


>gi|119476170|ref|ZP_01616522.1| CspA-like protein [marine gamma proteobacterium HTCC2143]
 gi|119450797|gb|EAW32031.1| CspA-like protein [marine gamma proteobacterium HTCC2143]
          Length = 91

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G DVF H S ++  G   L  GQ V++D V N  
Sbjct: 1  MQTGTVKWFNNAKGFGFILPEG---GGADVFAHYSTISMDGYKTLKAGQPVSFDTV-NGP 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G + A N++    S++
Sbjct: 57 KGLH-ATNIQAAQDSAD 72


>gi|54301716|ref|YP_131709.1| putative cold shock-like protein [Photobacterium profundum SS9]
 gi|46915136|emb|CAG21909.1| putative Cold shock-like protein [Photobacterium profundum SS9]
          Length = 79

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 15 TGLVKWFNEDKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 70

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 71 PQAANVVAL 79


>gi|217969795|ref|YP_002355029.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
 gi|217507122|gb|ACK54133.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITPE     GDD+F H SA+   G   L EGQ VT+D      
Sbjct: 1  MANGTVKWFNDSKGFGFITPEA---GGDDLFAHFSAIQGQGFKTLAEGQRVTFDVTTGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--LQASNIR 65


>gi|116493183|ref|YP_804918.1| cold-shock DNA-binding protein family protein [Pediococcus
          pentosaceus ATCC 25745]
 gi|116103333|gb|ABJ68476.1| cold-shock DNA-binding protein family [Pediococcus pentosaceus
          ATCC 25745]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFIT E     G DVF+H SA+   G   L EGQ V++D  ++D 
Sbjct: 1  MEQGTVKWFNADKGFGFITRE----DGSDVFVHFSAIQGDGFKTLEEGQAVSFDVEESDR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--PQAVNV 63


>gi|304408316|ref|ZP_07389964.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304342785|gb|EFM08631.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G DVF+H SA+   G   L EGQ V +   Q + 
Sbjct: 1  MQQGTVKWFNAEKGFGFIEVE----GGSDVFVHFSAIQGDGFKTLDEGQRVEFTIAQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQAENVVKL 66


>gi|302557416|ref|ZP_07309758.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
 gi|302475034|gb|EFL38127.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H SA+ + G   L EGQ VT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINATGFRELQEGQAVTFDVTQGQK 57

Query: 62 NGKYSAENLKL 72
               AEN+ L
Sbjct: 58 G--PQAENINL 66


>gi|302870196|ref|YP_003838833.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
 gi|315503526|ref|YP_004082413.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|330470396|ref|YP_004408139.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
 gi|302573055|gb|ADL49257.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
          27029]
 gi|315410145|gb|ADU08262.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|328813367|gb|AEB47539.1| cold-shock DNA-binding domain protein [Verrucosispora maris
          AB-18-032]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L +GQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGQDVFVHFSAIEMDGYKALDDGQRVEFEIAQGQK 56

Query: 62 NGKYSAENLKLV 73
               AE ++++
Sbjct: 57 G--PQAERVRVI 66


>gi|254464633|ref|ZP_05078044.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
 gi|206685541|gb|EDZ46023.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
          Length = 68

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G      DVF+H SAV  +GL  L + Q VT+D  +   
Sbjct: 1  MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVTFDI-EAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL+L
Sbjct: 57 DGRESAVNLQL 67


>gi|312870567|ref|ZP_07730683.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3]
 gi|311093907|gb|EFQ52235.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKGYGFI+ E    SGDDVF+H SA+   G  +L EGQ V++D  + D 
Sbjct: 1  MEQGTVKWFNNDKGYGFISRE----SGDDVFVHFSAIQGEGFKSLDEGQKVSFDVEEGD- 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGLQAVNVVK 65


>gi|153006954|ref|YP_001381279.1| cold-shock DNA-binding domain-containing protein
          [Anaeromyxobacter sp. Fw109-5]
 gi|152030527|gb|ABS28295.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
          sp. Fw109-5]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +G    G+DVF H +A+ + G   L EGQ V +D VQ   
Sbjct: 1  MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQTQGFRTLAEGQKVEFD-VQRGP 56

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 57 KGLQAANV 64


>gi|86738977|ref|YP_479377.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3]
 gi|111220090|ref|YP_710884.1| cold-shock protein [Frankia alni ACN14a]
 gi|158318310|ref|YP_001510818.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
          EAN1pec]
 gi|86565839|gb|ABD09648.1| cold-shock DNA-binding protein family [Frankia sp. CcI3]
 gi|111147622|emb|CAJ59277.1| Cold-shock protein; nucleic acid-binding domain [Frankia alni
          ACN14a]
 gi|158113715|gb|ABW15912.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ +G    G DVF+H SA+   G   L EGQ V +   Q   
Sbjct: 1  MAQGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIQMDGYKALEEGQRVEFQVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+ +++V
Sbjct: 58 G--PQADAVRVV 67


>gi|253688097|ref|YP_003017287.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|251754675|gb|ACT12751.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
          Length = 73

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    GDD+F H S +   G   L  GQ+V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|16800469|ref|NP_470737.1| hypothetical protein lin1401 [Listeria innocua Clip11262]
 gi|16803404|ref|NP_464889.1| hypothetical protein lmo1364 [Listeria monocytogenes EGD-e]
 gi|46907590|ref|YP_013979.1| cold-shock domain-contain protein [Listeria monocytogenes
          serotype 4b str. F2365]
 gi|47093751|ref|ZP_00231501.1| cold-shock domain family protein [Listeria monocytogenes str. 4b
          H7858]
 gi|47095947|ref|ZP_00233550.1| cold-shock domain family protein [Listeria monocytogenes str.
          1/2a F6854]
 gi|116872795|ref|YP_849576.1| cold shock protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|217964490|ref|YP_002350168.1| hypothetical protein LMHCC_1207 [Listeria monocytogenes HCC23]
 gi|224499943|ref|ZP_03668292.1| hypothetical protein LmonF1_09789 [Listeria monocytogenes Finland
          1988]
 gi|224501693|ref|ZP_03670000.1| hypothetical protein LmonFR_04122 [Listeria monocytogenes FSL
          R2-561]
 gi|254824577|ref|ZP_05229578.1| cold-shock domain-containing protein [Listeria monocytogenes FSL
          J1-194]
 gi|254827625|ref|ZP_05232312.1| cspL [Listeria monocytogenes FSL N3-165]
 gi|254829879|ref|ZP_05234534.1| cold shock protein [Listeria monocytogenes 10403S]
 gi|254852588|ref|ZP_05241936.1| cspL [Listeria monocytogenes FSL R2-503]
 gi|254898471|ref|ZP_05258395.1| cold shock protein [Listeria monocytogenes J0161]
 gi|254912038|ref|ZP_05262050.1| CspA protein [Listeria monocytogenes J2818]
 gi|254932321|ref|ZP_05265680.1| cspL [Listeria monocytogenes HPB2262]
 gi|254936365|ref|ZP_05268062.1| cspL [Listeria monocytogenes F6900]
 gi|255027593|ref|ZP_05299579.1| cold shock protein [Listeria monocytogenes FSL J2-003]
 gi|255521546|ref|ZP_05388783.1| cold shock protein [Listeria monocytogenes FSL J1-175]
 gi|284801749|ref|YP_003413614.1| hypothetical protein LM5578_1503 [Listeria monocytogenes 08-5578]
 gi|284994891|ref|YP_003416659.1| hypothetical protein LM5923_1456 [Listeria monocytogenes 08-5923]
 gi|290893527|ref|ZP_06556510.1| cold shock-like protein cspLA [Listeria monocytogenes FSL J2-071]
 gi|300765396|ref|ZP_07075378.1| cold-shock domain family protein [Listeria monocytogenes FSL
          N1-017]
 gi|315303031|ref|ZP_07873741.1| conserved domain protein [Listeria ivanovii FSL F6-596]
 gi|61221523|sp|P0A355|CSPA_LISMO RecName: Full=Cold shock-like protein CspLA; Short=CspL
 gi|61221525|sp|P0A356|CSPA_LISIN RecName: Full=Cold shock-like protein CspLA; Short=CspL
 gi|12054787|emb|CAC20630.1| cold shock protein L [Listeria monocytogenes]
 gi|16410780|emb|CAC99442.1| cspL [Listeria monocytogenes EGD-e]
 gi|16413874|emb|CAC96632.1| cspL [Listeria innocua Clip11262]
 gi|46880858|gb|AAT04156.1| cold-shock domain family protein [Listeria monocytogenes serotype
          4b str. F2365]
 gi|47015693|gb|EAL06623.1| cold-shock domain family protein [Listeria monocytogenes str.
          1/2a F6854]
 gi|47017872|gb|EAL08655.1| cold-shock domain family protein [Listeria monocytogenes str. 4b
          H7858]
 gi|116741673|emb|CAK20797.1| cold shock protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|217333760|gb|ACK39554.1| conserved domain protein [Listeria monocytogenes HCC23]
 gi|258600003|gb|EEW13328.1| cspL [Listeria monocytogenes FSL N3-165]
 gi|258605901|gb|EEW18509.1| cspL [Listeria monocytogenes FSL R2-503]
 gi|258608956|gb|EEW21564.1| cspL [Listeria monocytogenes F6900]
 gi|284057311|gb|ADB68252.1| hypothetical protein LM5578_1503 [Listeria monocytogenes 08-5578]
 gi|284060358|gb|ADB71297.1| hypothetical protein LM5923_1456 [Listeria monocytogenes 08-5923]
 gi|290556872|gb|EFD90403.1| cold shock-like protein cspLA [Listeria monocytogenes FSL J2-071]
 gi|293583877|gb|EFF95909.1| cspL [Listeria monocytogenes HPB2262]
 gi|293590004|gb|EFF98338.1| CspA protein [Listeria monocytogenes J2818]
 gi|293593815|gb|EFG01576.1| cold-shock domain-containing protein [Listeria monocytogenes FSL
          J1-194]
 gi|300513833|gb|EFK40898.1| cold-shock domain family protein [Listeria monocytogenes FSL
          N1-017]
 gi|307570946|emb|CAR84125.1| cold-shock family protein [Listeria monocytogenes L99]
 gi|313619068|gb|EFR90876.1| conserved domain protein [Listeria innocua FSL S4-378]
 gi|313623888|gb|EFR94003.1| conserved domain protein [Listeria innocua FSL J1-023]
 gi|313628598|gb|EFR97021.1| conserved domain protein [Listeria ivanovii FSL F6-596]
 gi|328467502|gb|EGF38571.1| cold shock protein [Listeria monocytogenes 1816]
 gi|328475078|gb|EGF45866.1| cold shock protein [Listeria monocytogenes 220]
 gi|332311805|gb|EGJ24900.1| Cold shock-like protein CspLA [Listeria monocytogenes str. Scott
          A]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E    +GDDVF+H SA+   G  +L EGQ VT+D V+   
Sbjct: 1  MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQGDGFKSLDEGQAVTFD-VEEGQ 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|323489356|ref|ZP_08094586.1| cold shock protein [Planococcus donghaensis MPA1U2]
 gi|323396997|gb|EGA89813.1| cold shock protein [Planococcus donghaensis MPA1U2]
          Length = 69

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFI        GDDVF+H + +   G   LTEG+ V++D + +  
Sbjct: 1  MNQGTVKWFNSEKGYGFIE----YNDGDDVFVHFTGIQGDGFRTLTEGKTVSFDII-DGN 55

Query: 62 NGKYSAENLKLVPK 75
           G  +A  +++ P+
Sbjct: 56 RGPQAANVIEVDPE 69


>gi|254487779|ref|ZP_05100984.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
          GAI101]
 gi|214044648|gb|EEB85286.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
          GAI101]
          Length = 68

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+G    G D+F+H SAV  AGL  L + Q VT+D  +   
Sbjct: 1  MATGTVKWFNTTKGYGFIAPDG---GGKDIFVHISAVERAGLTGLADNQKVTFDI-EAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N+ L
Sbjct: 57 DGRESAGNIAL 67


>gi|227112016|ref|ZP_03825672.1| cold shock-like protein [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
          Length = 73

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    GDD+F H S +   G   L  GQ+V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|16759589|ref|NP_455206.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|16764006|ref|NP_459621.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|29142638|ref|NP_805980.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|56414236|ref|YP_151311.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|146310817|ref|YP_001175891.1| cold shock protein CspE [Enterobacter sp. 638]
 gi|161615160|ref|YP_001589125.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Paratyphi B str. SPB7]
 gi|162139604|ref|YP_215645.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|167990632|ref|ZP_02571732.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|194444501|ref|YP_002039870.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194448211|ref|YP_002044662.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194472567|ref|ZP_03078551.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194735055|ref|YP_002113746.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195873911|ref|ZP_02699682.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|197251616|ref|YP_002145603.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197262485|ref|ZP_03162559.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197300846|ref|ZP_02661676.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|197363159|ref|YP_002142796.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|198244715|ref|YP_002214617.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|200390458|ref|ZP_03217069.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|204930521|ref|ZP_03221451.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|205351917|ref|YP_002225718.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205357082|ref|ZP_02344593.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205358472|ref|ZP_02656696.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|205358940|ref|ZP_02665405.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|205359626|ref|ZP_02830749.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|205360370|ref|ZP_02682831.2| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|213053415|ref|ZP_03346293.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
 gi|213425108|ref|ZP_03357858.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. E02-1180]
 gi|213580429|ref|ZP_03362255.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
 gi|213648627|ref|ZP_03378680.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
 gi|213857366|ref|ZP_03384337.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
 gi|224582464|ref|YP_002636262.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|238911579|ref|ZP_04655416.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Tennessee str. CDC07-0191]
 gi|289809995|ref|ZP_06540624.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
 gi|311280471|ref|YP_003942702.1| cold-shock DNA-binding domain-containing protein [Enterobacter
          cloacae SCF1]
 gi|25296131|pir||AH0579 cold shock-like protein cspE [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|16419141|gb|AAL19580.1| RNA chaperone, negative regulator of cspA transcription
          [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|16501881|emb|CAD05106.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29138269|gb|AAO69840.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|56128493|gb|AAV77999.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|145317693|gb|ABP59840.1| cold shock protein E (CspE) [Enterobacter sp. 638]
 gi|161364524|gb|ABX68292.1| hypothetical protein SPAB_02928 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194403164|gb|ACF63386.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194406515|gb|ACF66734.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194458931|gb|EDX47770.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194710557|gb|ACF89778.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195631943|gb|EDX50463.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|197094636|emb|CAR60158.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|197215319|gb|ACH52716.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197240740|gb|EDY23360.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197290243|gb|EDY29599.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|197939231|gb|ACH76564.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|199602903|gb|EDZ01449.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|204320455|gb|EDZ05658.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|205271698|emb|CAR36529.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205324288|gb|EDZ12127.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205330839|gb|EDZ17603.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|205334064|gb|EDZ20828.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|205340419|gb|EDZ27183.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|205344148|gb|EDZ30912.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|205349743|gb|EDZ36374.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|224466991|gb|ACN44821.1| cold shock protein E [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|261245902|emb|CBG23703.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267992359|gb|ACY87244.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|308749666|gb|ADO49418.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1]
 gi|312911660|dbj|BAJ35634.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. T000240]
 gi|320084898|emb|CBY94688.1| Cold shock-like protein cspE CSP-E [Salmonella enterica subsp.
          enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321226208|gb|EFX51259.1| Cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322613239|gb|EFY10182.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315996572]
 gi|322621307|gb|EFY18164.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-1]
 gi|322623727|gb|EFY20565.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-3]
 gi|322628999|gb|EFY25778.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-4]
 gi|322631721|gb|EFY28475.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-1]
 gi|322637543|gb|EFY34245.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-2]
 gi|322641883|gb|EFY38513.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 531954]
 gi|322646727|gb|EFY43233.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. NC_MB110209-0054]
 gi|322651428|gb|EFY47808.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. OH_2009072675]
 gi|322653121|gb|EFY49455.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. CASC_09SCPH15965]
 gi|322658841|gb|EFY55096.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 19N]
 gi|322664889|gb|EFY61082.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 81038-01]
 gi|322668891|gb|EFY65043.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. MD_MDA09249507]
 gi|322670603|gb|EFY66736.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 414877]
 gi|322675344|gb|EFY71420.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 366867]
 gi|322682185|gb|EFY78210.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 413180]
 gi|322684985|gb|EFY80982.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 446600]
 gi|322713693|gb|EFZ05264.1| RNA chaperone, negative regulator of cspA transcription
          [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. A50]
 gi|323128946|gb|ADX16376.1| cold shock-like protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
 gi|323193956|gb|EFZ79158.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609458-1]
 gi|323197952|gb|EFZ83074.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556150-1]
 gi|323202001|gb|EFZ87061.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609460]
 gi|323207134|gb|EFZ92087.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 507440-20]
 gi|323210399|gb|EFZ95290.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556152]
 gi|323214339|gb|EFZ99090.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB101509-0077]
 gi|323221490|gb|EGA05904.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB102109-0047]
 gi|323225534|gb|EGA09764.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
 gi|323231092|gb|EGA15208.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB111609-0052]
 gi|323234076|gb|EGA18165.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009083312]
 gi|323238229|gb|EGA22287.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009085258]
 gi|323242537|gb|EGA26561.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315731156]
 gi|323248486|gb|EGA32420.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2009159199]
 gi|323251298|gb|EGA35170.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008282]
 gi|323259226|gb|EGA42869.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008283]
 gi|323261634|gb|EGA45209.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008284]
 gi|323264816|gb|EGA48317.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008285]
 gi|323272347|gb|EGA55754.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008287]
 gi|326622372|gb|EGE28717.1| RNA chaperone, negative regulator of cspA transcription
          [Salmonella enterica subsp. enterica serovar Dublin
          str. 3246]
 gi|326626956|gb|EGE33299.1| cold shock-like protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
 gi|332987574|gb|AEF06557.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
          Length = 69

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++   N A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 60

Query: 64 KYSAENLKL 72
            +A    L
Sbjct: 61 PSAANVTAL 69


>gi|225848261|ref|YP_002728424.1| hypothetical protein SULAZ_0432 [Sulfurihydrogenibium azorense
          Az-Fu1]
 gi|225644220|gb|ACN99270.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 68

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW++  KG+GFIT +   ++G D+F+H SA+   G  NL EGQ V ++ VQ +
Sbjct: 1  MKVTGTVKWFDSKKGFGFITRD---DNGQDIFVHFSAIQGRGFKNLEEGQKVEFEIVQEE 57

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 58 -KGPRAANVVKL 68


>gi|195977285|ref|YP_002122529.1| major cold-shock protein [Streptococcus equi subsp. zooepidemicus
          MGCS10565]
 gi|195973990|gb|ACG61516.1| major cold-shock protein [Streptococcus equi subsp. zooepidemicus
          MGCS10565]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+    TE+G DVF H SA+ S G  +L EGQ VT+D V++  
Sbjct: 1  MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQSDGFRSLDEGQRVTFD-VEDGQ 55

Query: 62 NGKYSAENLKL 72
           G  +    KL
Sbjct: 56 RGPQAVNITKL 66


>gi|169828062|ref|YP_001698220.1| cold shock protein [Lysinibacillus sphaericus C3-41]
 gi|168992550|gb|ACA40090.1| cold shock protein [Lysinibacillus sphaericus C3-41]
          Length = 71

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G DVF H SA+   G  +L EGQ V +   ++  
Sbjct: 6  MTQGTVKWFNSEKGFGFIEVE----GGQDVFAHFSAIQGEGFKSLEEGQKVEFTI-EDGQ 60

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 61 RGPQAANIVKL 71


>gi|123443227|ref|YP_001007201.1| cold shock protein CspE [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|238752587|ref|ZP_04614060.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380]
 gi|332160847|ref|YP_004297424.1| cold shock protein CspE [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|122090188|emb|CAL13051.1| cold shock-like protein cspE1 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|238709178|gb|EEQ01423.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380]
 gi|318604749|emb|CBY26247.1| cold shock protein CspE [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|325665077|gb|ADZ41721.1| cold shock protein CspE [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330863376|emb|CBX73498.1| cold shock-like protein cspE [Yersinia enterocolitica W22703]
          Length = 69

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++   + A G
Sbjct: 5  KGSVKWFNEAKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFEIT-SGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|30022927|ref|NP_834558.1| cold shock protein [Bacillus cereus ATCC 14579]
 gi|30264924|ref|NP_847301.1| cold shock protein CspD [Bacillus anthracis str. Ames]
 gi|42784065|ref|NP_981312.1| cold shock protein CspD [Bacillus cereus ATCC 10987]
 gi|47530419|ref|YP_021768.1| cold shock protein CspD [Bacillus anthracis str. 'Ames Ancestor']
 gi|47568038|ref|ZP_00238744.1| cold-shock domain family protein-related protein [Bacillus cereus
          G9241]
 gi|49187745|ref|YP_030998.1| cold shock protein CspD [Bacillus anthracis str. Sterne]
 gi|49478797|ref|YP_038904.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|52140641|ref|YP_086189.1| cold shock protein [Bacillus cereus E33L]
 gi|65322228|ref|ZP_00395187.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012]
 gi|118479979|ref|YP_897130.1| cold-shock DNA-binding protein family protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|165869712|ref|ZP_02214370.1| cold shock protein CspD [Bacillus anthracis str. A0488]
 gi|167633815|ref|ZP_02392138.1| cold shock protein CspD [Bacillus anthracis str. A0442]
 gi|167637994|ref|ZP_02396272.1| cold shock protein CspD [Bacillus anthracis str. A0193]
 gi|170685769|ref|ZP_02876992.1| cold shock protein CspD [Bacillus anthracis str. A0465]
 gi|170705396|ref|ZP_02895860.1| cold shock protein CspD [Bacillus anthracis str. A0389]
 gi|177651104|ref|ZP_02933935.1| cold shock protein CspD [Bacillus anthracis str. A0174]
 gi|190567127|ref|ZP_03020042.1| cold shock protein CspD [Bacillus anthracis Tsiankovskii-I]
 gi|196032813|ref|ZP_03100226.1| cold shock protein CspD [Bacillus cereus W]
 gi|196041478|ref|ZP_03108771.1| cold shock protein CspD [Bacillus cereus NVH0597-99]
 gi|196044044|ref|ZP_03111281.1| cold shock protein CspD [Bacillus cereus 03BB108]
 gi|206969776|ref|ZP_03230730.1| cold shock protein CspD [Bacillus cereus AH1134]
 gi|206977004|ref|ZP_03237905.1| cold shock protein CspD [Bacillus cereus H3081.97]
 gi|217962350|ref|YP_002340922.1| cold shock protein CspD [Bacillus cereus AH187]
 gi|218234055|ref|YP_002369674.1| cold shock protein CspD [Bacillus cereus B4264]
 gi|218906084|ref|YP_002453918.1| cold shock protein CspD [Bacillus cereus AH820]
 gi|222098335|ref|YP_002532392.1| cold shock protein [Bacillus cereus Q1]
 gi|225866859|ref|YP_002752237.1| cold shock protein CspD [Bacillus cereus 03BB102]
 gi|227817655|ref|YP_002817664.1| cold shock protein CspD [Bacillus anthracis str. CDC 684]
 gi|228917511|ref|ZP_04081060.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228923616|ref|ZP_04086896.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228929909|ref|ZP_04092924.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228936170|ref|ZP_04098973.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228948606|ref|ZP_04110885.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228955142|ref|ZP_04117156.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228961133|ref|ZP_04122759.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228988125|ref|ZP_04148224.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229048573|ref|ZP_04194133.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|229072368|ref|ZP_04205572.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|229082122|ref|ZP_04214595.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
 gi|229087391|ref|ZP_04219530.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
 gi|229093978|ref|ZP_04225069.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
 gi|229112327|ref|ZP_04241866.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
 gi|229124425|ref|ZP_04253613.1| Cold shock protein cspB [Bacillus cereus 95/8201]
 gi|229130142|ref|ZP_04259103.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
 gi|229141600|ref|ZP_04270132.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
 gi|229147434|ref|ZP_04275783.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|229153070|ref|ZP_04281251.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|229158481|ref|ZP_04286542.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
 gi|229181180|ref|ZP_04308512.1| Cold shock protein cspB [Bacillus cereus 172560W]
 gi|229187123|ref|ZP_04314271.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
 gi|229193146|ref|ZP_04320101.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|229199032|ref|ZP_04325717.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|229601378|ref|YP_002869129.1| cold shock protein CspD [Bacillus anthracis str. A0248]
 gi|254687666|ref|ZP_05151522.1| cold shock protein CspD [Bacillus anthracis str. CNEVA-9066]
 gi|254725230|ref|ZP_05187013.1| cold shock protein CspD [Bacillus anthracis str. A1055]
 gi|254736972|ref|ZP_05194678.1| cold shock protein CspD [Bacillus anthracis str. Western North
          America USA6153]
 gi|254742006|ref|ZP_05199693.1| cold shock protein CspD [Bacillus anthracis str. Kruger B]
 gi|254754395|ref|ZP_05206430.1| cold shock protein CspD [Bacillus anthracis str. Vollum]
 gi|254757227|ref|ZP_05209254.1| cold shock protein CspD [Bacillus anthracis str. Australia 94]
 gi|296505326|ref|YP_003667026.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|301056373|ref|YP_003794584.1| cold shock protein [Bacillus anthracis CI]
 gi|49035522|sp|Q816H3|CSPD_BACCR RecName: Full=Cold shock-like protein CspD
 gi|49035525|sp|Q81K90|CSPD_BACAN RecName: Full=Cold shock-like protein CspD
 gi|29898486|gb|AAP11759.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gi|30259599|gb|AAP28787.1| cold shock protein CspD [Bacillus anthracis str. Ames]
 gi|30408066|gb|AAP30080.1| CspD [Bacillus thuringiensis]
 gi|42739996|gb|AAS43920.1| cold shock protein CspD [Bacillus cereus ATCC 10987]
 gi|47505567|gb|AAT34243.1| cold shock protein CspD [Bacillus anthracis str. 'Ames Ancestor']
 gi|47555341|gb|EAL13686.1| cold-shock domain family protein-related protein [Bacillus cereus
          G9241]
 gi|49181672|gb|AAT57048.1| cold shock protein CspD [Bacillus anthracis str. Sterne]
 gi|49330353|gb|AAT60999.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|51974110|gb|AAU15660.1| cold shock protein [Bacillus cereus E33L]
 gi|57020677|gb|AAW32928.1| cold-shock protein D [Bacillus thuringiensis]
 gi|118419204|gb|ABK87623.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
          str. Al Hakam]
 gi|164714541|gb|EDR20060.1| cold shock protein CspD [Bacillus anthracis str. A0488]
 gi|167513811|gb|EDR89179.1| cold shock protein CspD [Bacillus anthracis str. A0193]
 gi|167530616|gb|EDR93318.1| cold shock protein CspD [Bacillus anthracis str. A0442]
 gi|170129521|gb|EDS98384.1| cold shock protein CspD [Bacillus anthracis str. A0389]
 gi|170670233|gb|EDT20973.1| cold shock protein CspD [Bacillus anthracis str. A0465]
 gi|172082930|gb|EDT67992.1| cold shock protein CspD [Bacillus anthracis str. A0174]
 gi|190561631|gb|EDV15601.1| cold shock protein CspD [Bacillus anthracis Tsiankovskii-I]
 gi|195994242|gb|EDX58197.1| cold shock protein CspD [Bacillus cereus W]
 gi|196025380|gb|EDX64050.1| cold shock protein CspD [Bacillus cereus 03BB108]
 gi|196027726|gb|EDX66340.1| cold shock protein CspD [Bacillus cereus NVH0597-99]
 gi|206735464|gb|EDZ52632.1| cold shock protein CspD [Bacillus cereus AH1134]
 gi|206744809|gb|EDZ56215.1| cold shock protein CspD [Bacillus cereus H3081.97]
 gi|217066836|gb|ACJ81086.1| cold shock protein CspD [Bacillus cereus AH187]
 gi|218162012|gb|ACK62004.1| cold shock protein CspD [Bacillus cereus B4264]
 gi|218537043|gb|ACK89441.1| cold shock protein CspD [Bacillus cereus AH820]
 gi|221242393|gb|ACM15103.1| cold shock protein [Bacillus cereus Q1]
 gi|225785799|gb|ACO26016.1| cold shock protein CspD [Bacillus cereus 03BB102]
 gi|227007679|gb|ACP17422.1| cold shock protein CspD [Bacillus anthracis str. CDC 684]
 gi|228584445|gb|EEK42578.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|228590410|gb|EEK48274.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|228596364|gb|EEK54036.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
 gi|228602371|gb|EEK59860.1| Cold shock protein cspB [Bacillus cereus 172560W]
 gi|228625000|gb|EEK81766.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
 gi|228630490|gb|EEK87138.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|228636116|gb|EEK92597.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|228641880|gb|EEK98179.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
 gi|228653357|gb|EEL09234.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
 gi|228659077|gb|EEL14729.1| Cold shock protein cspB [Bacillus cereus 95/8201]
 gi|228671167|gb|EEL26472.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
 gi|228689460|gb|EEL43274.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
 gi|228695920|gb|EEL48766.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
 gi|228701187|gb|EEL53700.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
 gi|228710793|gb|EEL62764.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|228722775|gb|EEL74160.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|228771623|gb|EEM20090.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228798576|gb|EEM45563.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228804553|gb|EEM51158.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228811105|gb|EEM57447.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228823515|gb|EEM69344.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228829825|gb|EEM75447.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228836085|gb|EEM81446.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228842183|gb|EEM87282.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229265786|gb|ACQ47423.1| cold shock protein CspD [Bacillus anthracis str. A0248]
 gi|296326378|gb|ADH09306.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|300378542|gb|ADK07446.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
 gi|324328763|gb|ADY24023.1| cold shock protein CspD [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V+++ V+ + 
Sbjct: 1  MQTGKVKWFNSEKGFGFIEVE----GGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|331700983|ref|YP_004397942.1| cold-shock DNA-binding domain-containing protein [Lactobacillus
          buchneri NRRL B-30929]
 gi|329128326|gb|AEB72879.1| cold-shock DNA-binding domain protein [Lactobacillus buchneri
          NRRL B-30929]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKGYGFIT     E G DVF+H SA+ + G   L EGQ VT D V++  
Sbjct: 1  MEQGTVKWFNGDKGYGFIT----LEDGKDVFVHFSAINADGYKTLEEGQKVTLD-VEDSD 55

Query: 62 NGKYSAENLKLVP 74
           G  +A N+ +V 
Sbjct: 56 RGPQAA-NVTVVE 67


>gi|154496406|ref|ZP_02035102.1| hypothetical protein BACCAP_00695 [Bacteroides capillosus ATCC
          29799]
 gi|150274489|gb|EDN01566.1| hypothetical protein BACCAP_00695 [Bacteroides capillosus ATCC
          29799]
          Length = 70

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KG+GFI+ +   +   DVF+H SA+   G   L EGQ V+YD   +  
Sbjct: 1  MYQGTVKWFNETKGFGFISND---DGSGDVFVHFSAILVDGFKTLAEGQKVSYDTEPDPK 57

Query: 62 N-GKYSAENLKLV 73
          + GK  A N++ +
Sbjct: 58 DAGKLRAVNVRPL 70


>gi|86356092|ref|YP_467984.1| cold shock protein [Rhizobium etli CFN 42]
 gi|190890106|ref|YP_001976648.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|218461048|ref|ZP_03501139.1| probable cold shock protein [Rhizobium etli Kim 5]
 gi|218515057|ref|ZP_03511897.1| probable cold shock protein [Rhizobium etli 8C-3]
 gi|86280194|gb|ABC89257.1| probable cold shock protein [Rhizobium etli CFN 42]
 gi|190695385|gb|ACE89470.1| probable cold shock protein [Rhizobium etli CIAT 652]
          Length = 74

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + +D  ++ 
Sbjct: 5  IMTTGTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFDLERDH 61

Query: 61 ANGKYSAENLK 71
           +GK SA NL+
Sbjct: 62 KSGKMSACNLQ 72


>gi|84502886|ref|ZP_01000999.1| cold shock family protein [Oceanicola batsensis HTCC2597]
 gi|84388869|gb|EAQ01739.1| cold shock family protein [Oceanicola batsensis HTCC2597]
          Length = 68

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PEG      DVF+H SAV  +GL  L +G  V++D  ++  
Sbjct: 1  MATGTVKWFNTTKGYGFIAPEG---GSKDVFVHISAVERSGLTGLQDGAKVSFDL-ESGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA NL L+
Sbjct: 57 DGRESASNLALL 68


>gi|332637467|ref|ZP_08416330.1| cold shock protein [Weissella cibaria KACC 11862]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GF++ E    SGDDVF+H SA+   G  +L EGQ V+++  Q D 
Sbjct: 1  MEQGTVKWFNADKGFGFLSRE----SGDDVFVHFSAIQGDGFKSLEEGQAVSFEVQQGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGLQAANVTKL 66


>gi|294499467|ref|YP_003563167.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295704817|ref|YP_003597892.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294349404|gb|ADE69733.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294802476|gb|ADF39542.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E    +GDDVF+H SA+ S G  +L EGQ VT+D V+   
Sbjct: 1  MEKGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSEGFKSLDEGQAVTFD-VEEGQ 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|260463314|ref|ZP_05811515.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|259030904|gb|EEW32179.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
          Length = 69

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ ++ EGQ V Y+ V+++ 
Sbjct: 1  MSTGTVKWFNATKGFGFIQPD---DGSADVFVHISAVERAGMRDIVEGQKVGYEMVRDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA+ LK
Sbjct: 58 SGKMSADQLK 67


>gi|183598325|ref|ZP_02959818.1| hypothetical protein PROSTU_01715 [Providencia stuartii ATCC
          25827]
 gi|188020499|gb|EDU58539.1| hypothetical protein PROSTU_01715 [Providencia stuartii ATCC
          25827]
          Length = 83

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G+D+F H S +   G   L  GQ V +       
Sbjct: 1  METGTVKWFNNAKGFGFICPE---NGGEDIFAHYSCIQMEGYRTLKAGQKVNFSI-NTGP 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G ++  NL ++P  S+
Sbjct: 57 KGNHA--NL-IIPIESS 70


>gi|197123689|ref|YP_002135640.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|196173538|gb|ACG74511.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +G    G+DVF H +A+ S G  +L EGQ V +D  +   
Sbjct: 1  MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQSEGFRSLAEGQKVEFDVTKGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--LQAANVRPL 67


>gi|149915747|ref|ZP_01904272.1| cold shock protein CspA [Roseobacter sp. AzwK-3b]
 gi|149810329|gb|EDM70174.1| cold shock protein CspA [Roseobacter sp. AzwK-3b]
          Length = 68

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PEG    G DVF+H SAV  AGL  L + Q VT+D  +   
Sbjct: 1  MANGTVKWFNTTKGYGFIAPEG---GGKDVFVHISAVERAGLTGLADNQKVTFDI-EAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N+ L
Sbjct: 57 DGRESAANIAL 67


>gi|85858086|ref|YP_460288.1| cold shock protein [Syntrophus aciditrophicus SB]
 gi|85721177|gb|ABC76120.1| cold shock protein [Syntrophus aciditrophicus SB]
          Length = 90

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  +     G DVF+H SA+ S+G   L EGQ V+++ VQ   
Sbjct: 25 MPEGKVKWFNEQKGFGFIEKD----EGGDVFVHYSAIQSSGFKTLYEGQRVSFE-VQTGQ 79

Query: 62 NGKYSAENLKLV 73
           G  +A N+K +
Sbjct: 80 KGP-AAVNVKPI 90


>gi|148255251|ref|YP_001239836.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
          BTAi1]
 gi|146407424|gb|ABQ35930.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
          Length = 69

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          ++GS+KW+NP KGYGFI P G      DVF+H SAV  AGL  L E Q + YD V++   
Sbjct: 4  YKGSVKWFNPTKGYGFIKPAGGD---KDVFVHISAVERAGLTTLNENQAIEYDLVES--R 58

Query: 63 GKYSAENLKL 72
          GK SAENLKL
Sbjct: 59 GKTSAENLKL 68


>gi|260589144|ref|ZP_05855057.1| cold-shock domain protein [Blautia hansenii DSM 20583]
 gi|331082560|ref|ZP_08331685.1| cold shock-like protein cspLA [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|260540564|gb|EEX21133.1| cold-shock domain protein [Blautia hansenii DSM 20583]
 gi|330400538|gb|EGG80168.1| cold shock-like protein cspLA [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFIT     E G DVF+H SA+   G  +L EGQ V+YD  +  A
Sbjct: 1  MNKGTVKWFNAEKGYGFIT----GEDGQDVFVHFSAINGEGFKSLEEGQAVSYDLTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGMQAANVEKL 66


>gi|210622637|ref|ZP_03293297.1| hypothetical protein CLOHIR_01245 [Clostridium hiranonis DSM
          13275]
 gi|210154138|gb|EEA85144.1| hypothetical protein CLOHIR_01245 [Clostridium hiranonis DSM
          13275]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI+ EG     DDVF+H SA+ + G  +L EGQ V ++ V + A
Sbjct: 1  MKTGVVKWFNNEKGFGFISVEGE----DDVFVHFSAIQTEGYKSLEEGQKVEFEVV-DGA 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 KGPQAANVVKL 66


>gi|182436795|ref|YP_001824514.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|239943459|ref|ZP_04695396.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|239989914|ref|ZP_04710578.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
 gi|282860706|ref|ZP_06269772.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|291446930|ref|ZP_06586320.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|297192805|ref|ZP_06910203.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|326777390|ref|ZP_08236655.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178465311|dbj|BAG19831.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|282564442|gb|EFB69978.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|291349877|gb|EFE76781.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|297151505|gb|EFH31205.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|320009215|gb|ADW04065.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
 gi|326657723|gb|EGE42569.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q+V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQVVNFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENVT 65


>gi|157691252|ref|YP_001485714.1| cold-shock protein [Bacillus pumilus SAFR-032]
 gi|157680010|gb|ABV61154.1| cold-shock protein [Bacillus pumilus SAFR-032]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ V++D  Q   
Sbjct: 1  MEQGTVKWFNAEKGFGFIERE----EGDDVFVHFSAIQGDGFKSLDEGQKVSFDVEQGSR 56

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 57 G--AQAANVQKI 66


>gi|77917817|ref|YP_355632.1| cold shock protein [Pelobacter carbinolicus DSM 2380]
 gi|77543900|gb|ABA87462.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
          DSM 2380]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFIT +     G DVF+H SA+   G  +L EG+ V+++  Q   
Sbjct: 1  MIQGTVKWFNDAKGYGFITQD----DGPDVFVHYSAIQVDGYKSLNEGERVSFEVSQGSK 56

Query: 62 NGKYSAENLKLV 73
               A N+  V
Sbjct: 57 G--PQASNVAKV 66


>gi|126724626|ref|ZP_01740469.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2150]
 gi|126705790|gb|EBA04880.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2150]
          Length = 68

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+     G+DVF+H SAV  AGL  L + Q VTY+  +   
Sbjct: 1  MANGTVKWFNSTKGYGFIAPDA---GGNDVFVHISAVERAGLTGLKDNQKVTYEL-ETGR 56

Query: 62 NGKYSAENLKL 72
          +GK SA +L L
Sbjct: 57 DGKQSAGDLAL 67


>gi|261821256|ref|YP_003259362.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
 gi|261605269|gb|ACX87755.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
          Length = 73

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    GDD+F H S +   G   L  GQ+V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|89056116|ref|YP_511567.1| cold-shock DNA-binding protein family protein [Jannaschia sp.
          CCS1]
 gi|88865665|gb|ABD56542.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1]
          Length = 68

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G DVF+H SAV  +GL  L + Q VTYD  +   
Sbjct: 1  MANGTVKWFNSTKGFGFIAPET---GGKDVFVHISAVERSGLTGLADNQKVTYDL-EAGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA NLK V
Sbjct: 57 DGRESAVNLKAV 68


>gi|172057695|ref|YP_001814155.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|172057697|ref|YP_001814157.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|171990216|gb|ACB61138.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
          255-15]
 gi|171990218|gb|ACB61140.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
          255-15]
          Length = 66

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E    +GDDVF+H SA+ + G  +L EGQ V+++ V+   
Sbjct: 1  MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQTDGFKSLDEGQEVSFE-VEEGQ 55

Query: 62 NGKYSAENLKL 72
           G  +    KL
Sbjct: 56 RGPQATNVTKL 66


>gi|51595435|ref|YP_069626.1| cold shock protein CspE [Yersinia pseudotuberculosis IP 32953]
 gi|108808497|ref|YP_652413.1| cold shock protein CspE [Yersinia pestis Antiqua]
 gi|145599922|ref|YP_001163998.1| cold shock protein CspE [Yersinia pestis Pestoides F]
 gi|149365504|ref|ZP_01887539.1| putative cold shock protein [Yersinia pestis CA88-4125]
 gi|153947984|ref|YP_001401920.1| cold shock protein CspE [Yersinia pseudotuberculosis IP 31758]
 gi|161484846|ref|NP_668492.2| cold shock protein CspE [Yersinia pestis KIM 10]
 gi|161511416|ref|NP_992489.2| cold shock protein CspE [Yersinia pestis biovar Microtus str.
          91001]
 gi|162418633|ref|YP_001606345.1| cold shock protein CspE [Yersinia pestis Angola]
 gi|165925190|ref|ZP_02221022.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165937609|ref|ZP_02226171.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166008509|ref|ZP_02229407.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166212360|ref|ZP_02238395.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167398559|ref|ZP_02304083.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167422542|ref|ZP_02314295.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167423259|ref|ZP_02315012.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|170025252|ref|YP_001721757.1| cold shock protein CspE [Yersinia pseudotuberculosis YPIII]
 gi|186894465|ref|YP_001871577.1| cold shock protein CspE [Yersinia pseudotuberculosis PB1/+]
 gi|218929676|ref|YP_002347551.1| cold shock protein CspE [Yersinia pestis CO92]
 gi|229838141|ref|ZP_04458300.1| DNA-binding transcriptional repressor [Yersinia pestis biovar
          Orientalis str. PEXU2]
 gi|229895932|ref|ZP_04511102.1| DNA-binding transcriptional repressor [Yersinia pestis Pestoides
          A]
 gi|229898749|ref|ZP_04513894.1| DNA-binding transcriptional repressor [Yersinia pestis biovar
          Orientalis str. India 195]
 gi|229901480|ref|ZP_04516602.1| DNA-binding transcriptional repressor [Yersinia pestis Nepal516]
 gi|238755048|ref|ZP_04616396.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473]
 gi|238758047|ref|ZP_04619228.1| hypothetical protein yaldo0001_9270 [Yersinia aldovae ATCC 35236]
 gi|238762891|ref|ZP_04623859.1| Cold shock-like protein cspE [Yersinia kristensenii ATCC 33638]
 gi|238785727|ref|ZP_04629701.1| Cold shock-like protein cspE [Yersinia bercovieri ATCC 43970]
 gi|238791629|ref|ZP_04635267.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909]
 gi|238795419|ref|ZP_04638934.1| Cold shock-like protein cspE [Yersinia mollaretii ATCC 43969]
 gi|270263689|ref|ZP_06191958.1| Cold shock-like protein CspE [Serratia odorifera 4Rx13]
 gi|270489665|ref|ZP_06206739.1| cold shock protein CspE [Yersinia pestis KIM D27]
 gi|284988376|ref|YP_003422335.1| cold shock protein [Yersinia pestis Nepal516]
 gi|293392426|ref|ZP_06636748.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
 gi|51588717|emb|CAH20328.1| putative cold shock protein [Yersinia pseudotuberculosis IP
          32953]
 gi|108780410|gb|ABG14468.1| cold shock protein E (CspE) [Yersinia pestis Antiqua]
 gi|115348287|emb|CAL21218.1| putative cold shock protein [Yersinia pestis CO92]
 gi|145211618|gb|ABP41025.1| cold shock protein E (CspE) [Yersinia pestis Pestoides F]
 gi|149291917|gb|EDM41991.1| putative cold shock protein [Yersinia pestis CA88-4125]
 gi|152959479|gb|ABS46940.1| cold shock DNA-binding domain protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|162351448|gb|ABX85396.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
 gi|165914359|gb|EDR32974.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165922797|gb|EDR39948.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165992891|gb|EDR45192.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166206291|gb|EDR50771.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166958556|gb|EDR55577.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167051063|gb|EDR62471.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167057429|gb|EDR67175.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169751786|gb|ACA69304.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186697491|gb|ACC88120.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229681409|gb|EEO77503.1| DNA-binding transcriptional repressor [Yersinia pestis Nepal516]
 gi|229688297|gb|EEO80368.1| DNA-binding transcriptional repressor [Yersinia pestis biovar
          Orientalis str. India 195]
 gi|229694507|gb|EEO84554.1| DNA-binding transcriptional repressor [Yersinia pestis biovar
          Orientalis str. PEXU2]
 gi|229700855|gb|EEO88884.1| DNA-binding transcriptional repressor [Yersinia pestis Pestoides
          A]
 gi|238698902|gb|EEP91651.1| Cold shock-like protein cspE [Yersinia kristensenii ATCC 33638]
 gi|238703801|gb|EEP96337.1| hypothetical protein yaldo0001_9270 [Yersinia aldovae ATCC 35236]
 gi|238706752|gb|EEP99121.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473]
 gi|238713367|gb|EEQ05405.1| Cold shock-like protein cspE [Yersinia bercovieri ATCC 43970]
 gi|238720538|gb|EEQ12339.1| Cold shock-like protein cspE [Yersinia mollaretii ATCC 43969]
 gi|238729245|gb|EEQ20761.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909]
 gi|270042573|gb|EFA15668.1| Cold shock-like protein CspE [Serratia odorifera 4Rx13]
 gi|270338169|gb|EFA48946.1| cold shock protein CspE [Yersinia pestis KIM D27]
 gi|291425080|gb|EFE98287.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
          Length = 69

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++   N A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFEIT-NGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|302879451|ref|YP_003848015.1| cold-shock DNA-binding domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302582240|gb|ADL56251.1| cold-shock DNA-binding domain protein [Gallionella
          capsiferriformans ES-2]
          Length = 67

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  +D+F H SA+  +G  +L EGQ V++D V+   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---DGSEDLFAHFSAINMSGFKSLKEGQKVSFDVVKGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--NQASNIQ 65


>gi|126729016|ref|ZP_01744831.1| cold shock family protein [Sagittula stellata E-37]
 gi|126710946|gb|EBA09997.1| cold shock family protein [Sagittula stellata E-37]
          Length = 68

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE   E G DVF+H SAV  +GL  L + Q V+Y+  +   
Sbjct: 1  MPNGTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYEL-REGR 56

Query: 62 NGKYSAENLKLV 73
          +G+  A +LK++
Sbjct: 57 DGRTMASDLKVI 68


>gi|270261164|ref|ZP_06189437.1| hypothetical protein SOD_a03890 [Serratia odorifera 4Rx13]
 gi|270044648|gb|EFA17739.1| hypothetical protein SOD_a03890 [Serratia odorifera 4Rx13]
          Length = 73

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V++D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVSFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|289434645|ref|YP_003464517.1| cold-shock domain protein [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|289170889|emb|CBH27431.1| cold-shock domain protein [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
          Length = 66

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E    +GDDVF+H SA+   G  +L EGQ V++D V+   
Sbjct: 1  MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQGDGFKSLDEGQAVSFD-VEEGQ 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|71909004|ref|YP_286591.1| cold-shock DNA-binding protein family protein [Dechloromonas
          aromatica RCB]
 gi|71848625|gb|AAZ48121.1| cold-shock DNA-binding protein family [Dechloromonas aromatica
          RCB]
          Length = 68

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P   +E G+D+F H SA+   G   L E Q VT+D V N  
Sbjct: 1  MANGTVKWFNDSKGFGFISP---SEGGEDLFAHFSAIQGNGFKTLAENQKVTFDVV-NGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|15805932|ref|NP_294631.1| CSD family cold shock protein [Deinococcus radiodurans R1]
 gi|6458627|gb|AAF10483.1|AE001943_3 cold shock protein, CSD family [Deinococcus radiodurans R1]
          Length = 133

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G +KW+N +KG+GFI     TE   DVF H SA+ S+G   L EG  V ++      
Sbjct: 48  MATGRVKWFNAEKGFGFIE----TEGSADVFAHYSAINSSGFRKLNEGDEVEFEIEPGQN 103

Query: 62  NGKYSAENLKLVPKS 76
                A+N+ +   +
Sbjct: 104 GKGPQAKNIVVTKAA 118


>gi|218681656|ref|ZP_03529457.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894]
          Length = 69

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N  KG+GFI P+   +   DVF+H SAV  AG+  L EGQ + YD V++  
Sbjct: 1  MNSGVVKWFNGTKGFGFIQPD---DGSTDVFVHISAVERAGMRELVEGQKIRYDLVRDKR 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKNSADNLQ 67


>gi|229029377|ref|ZP_04185462.1| Cold shock-like protein cspB [Bacillus cereus AH1271]
 gi|228731937|gb|EEL82834.1| Cold shock-like protein cspB [Bacillus cereus AH1271]
          Length = 77

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 14 QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 68

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 69 PQAANVVKL 77


>gi|206579703|ref|YP_002239721.1| cold shock protein CspE [Klebsiella pneumoniae 342]
 gi|288936563|ref|YP_003440622.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|206568761|gb|ACI10537.1| cold shock protein CspE [Klebsiella pneumoniae 342]
 gi|288891272|gb|ADC59590.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
          Length = 69

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   N A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVMAI 69


>gi|288554127|ref|YP_003426062.1| cold shock protein CspC [Bacillus pseudofirmus OF4]
 gi|288545287|gb|ADC49170.1| cold shock protein CspC [Bacillus pseudofirmus OF4]
          Length = 65

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  E     GDDVF+H SA+ S G  +L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFNAEKGFGFIERE----DGDDVFVHFSAINSEGFKSLDEGQDVEFEIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|145592834|ref|YP_001157131.1| cold-shock DNA-binding domain-containing protein [Salinispora
          tropica CNB-440]
 gi|159035978|ref|YP_001535231.1| cold-shock DNA-binding domain-containing protein [Salinispora
          arenicola CNS-205]
 gi|238061348|ref|ZP_04606057.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|145302171|gb|ABP52753.1| cold-shock DNA-binding protein family [Salinispora tropica
          CNB-440]
 gi|157914813|gb|ABV96240.1| cold-shock DNA-binding domain protein [Salinispora arenicola
          CNS-205]
 gi|237883159|gb|EEP71987.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
          Length = 67

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  +     G DVF+H SA+   G   L +GQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAVD----GGQDVFVHFSAIEMDGYKALDDGQRVEFEIAQGQK 56

Query: 62 NGKYSAENLKLV 73
               AE +++V
Sbjct: 57 G--PQAERVRVV 66


>gi|86743144|ref|YP_483544.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3]
 gi|86570006|gb|ABD13815.1| cold-shock DNA-binding protein family [Frankia sp. CcI3]
          Length = 67

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ +G    G DVF+H S++ + G  +L EGQ V ++ VQ   
Sbjct: 1  MAQGTVKWFNAEKGFGFISVDG---GGPDVFVHYSSIVADGYKSLDEGQSVQFEIVQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+N++ V
Sbjct: 58 G--PQADNVQPV 67


>gi|308067105|ref|YP_003868710.1| Cold shock-like protein cspLB (CspB) [Paenibacillus polymyxa
          E681]
 gi|305856384|gb|ADM68172.1| Cold shock-like protein cspLB (CspB) [Paenibacillus polymyxa
          E681]
          Length = 66

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     G DVF+H SA+   G  +L EGQ V ++ V+ + 
Sbjct: 1  MQTGTVKWFNAEKGFGFIEVE----GGSDVFVHFSAIQGDGFKSLDEGQRVEFNVVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQAENVVKL 66


>gi|116515229|ref|YP_802858.1| cold shock protein CspE [Buchnera aphidicola str. Cc (Cinara
          cedri)]
 gi|116257083|gb|ABJ90765.1| RNA chaperone, transcription antiterminator [Buchnera aphidicola
          str. Cc (Cinara cedri)]
          Length = 69

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++  +  A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEG-AKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVVSV 69


>gi|299822994|ref|ZP_07054880.1| cold shock protein CspA [Listeria grayi DSM 20601]
 gi|299816523|gb|EFI83761.1| cold shock protein CspA [Listeria grayi DSM 20601]
          Length = 66

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E    +GDDVF+H SA+   G  +L EGQ V++D V+   
Sbjct: 1  METGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQGDGFKSLDEGQAVSFD-VEEGQ 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|53718538|ref|YP_107524.1| cold shock-like protein [Burkholderia pseudomallei K96243]
 gi|53725849|ref|YP_103842.1| cold-shock domain-contain protein [Burkholderia mallei ATCC
          23344]
 gi|67642114|ref|ZP_00440875.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
          horse 4]
 gi|115352619|ref|YP_774458.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria AMMD]
 gi|121599049|ref|YP_991922.1| cold-shock domain-contain protein [Burkholderia mallei SAVP1]
 gi|124383933|ref|YP_001027037.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
          10229]
 gi|126441710|ref|YP_001058009.1| cold shock protein [Burkholderia pseudomallei 668]
 gi|126450006|ref|YP_001081686.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
          10247]
 gi|126453970|ref|YP_001065243.1| cold shock protein [Burkholderia pseudomallei 1106a]
 gi|134281301|ref|ZP_01768010.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
 gi|134296693|ref|YP_001120428.1| cold-shock DNA-binding protein family protein [Burkholderia
          vietnamiensis G4]
 gi|161523955|ref|YP_001578967.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          multivorans ATCC 17616]
 gi|167003876|ref|ZP_02269655.1| cold-shock DNA-binding domain protein [Burkholderia mallei
          PRL-20]
 gi|167561845|ref|ZP_02354761.1| cold-shock domain family protein-related protein [Burkholderia
          oklahomensis EO147]
 gi|167569068|ref|ZP_02361942.1| cold-shock domain family protein-related protein [Burkholderia
          oklahomensis C6786]
 gi|167580101|ref|ZP_02372975.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis TXDOH]
 gi|167585698|ref|ZP_02378086.1| cold-shock domain family protein-related protein [Burkholderia
          ubonensis Bu]
 gi|167618166|ref|ZP_02386797.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis Bt4]
 gi|167718444|ref|ZP_02401680.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei DM98]
 gi|167737494|ref|ZP_02410268.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei 14]
 gi|167814612|ref|ZP_02446292.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei 91]
 gi|167823082|ref|ZP_02454553.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei 9]
 gi|167835723|ref|ZP_02462606.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis MSMB43]
 gi|167844643|ref|ZP_02470151.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei B7210]
 gi|167901628|ref|ZP_02488833.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei NCTC 13177]
 gi|167909877|ref|ZP_02496968.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei 112]
 gi|167917900|ref|ZP_02504991.1| cold-shock domain family protein-related protein [Burkholderia
          pseudomallei BCC215]
 gi|170697706|ref|ZP_02888794.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171319749|ref|ZP_02908837.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|172061480|ref|YP_001809132.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|189351284|ref|YP_001946912.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|217419769|ref|ZP_03451275.1| cold shock family protein [Burkholderia pseudomallei 576]
 gi|221199249|ref|ZP_03572293.1| cold shock protein [Burkholderia multivorans CGD2M]
 gi|221205849|ref|ZP_03578864.1| cold shock protein [Burkholderia multivorans CGD2]
 gi|221211471|ref|ZP_03584450.1| cold shock protein [Burkholderia multivorans CGD1]
 gi|237811160|ref|YP_002895611.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|242316861|ref|ZP_04815877.1| cold shock family protein [Burkholderia pseudomallei 1106b]
 gi|254181506|ref|ZP_04888103.1| cold shock protein [Burkholderia pseudomallei 1655]
 gi|254196847|ref|ZP_04903271.1| cold shock protein [Burkholderia pseudomallei S13]
 gi|254202546|ref|ZP_04908909.1| cold-shock domain family protein [Burkholderia mallei FMH]
 gi|254207883|ref|ZP_04914233.1| cold-shock domain family protein [Burkholderia mallei JHU]
 gi|254262054|ref|ZP_04953108.1| cold shock family protein [Burkholderia pseudomallei 1710a]
 gi|254296417|ref|ZP_04963874.1| cold shock protein [Burkholderia pseudomallei 406e]
 gi|254298241|ref|ZP_04965693.1| cold shock protein [Burkholderia pseudomallei 406e]
 gi|257140008|ref|ZP_05588270.1| cold-shock domain-contain protein [Burkholderia thailandensis
          E264]
 gi|52208952|emb|CAH34891.1| cold shock-like protein [Burkholderia pseudomallei K96243]
 gi|52429272|gb|AAU49865.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344]
 gi|115282607|gb|ABI88124.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
          AMMD]
 gi|121227859|gb|ABM50377.1| cold-shock domain family protein [Burkholderia mallei SAVP1]
 gi|124291953|gb|ABN01222.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
          10229]
 gi|126221203|gb|ABN84709.1| cold shock family protein [Burkholderia pseudomallei 668]
 gi|126227612|gb|ABN91152.1| cold shock family protein [Burkholderia pseudomallei 1106a]
 gi|126242876|gb|ABO05969.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
          10247]
 gi|134139850|gb|ABO55593.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
          G4]
 gi|134247607|gb|EBA47692.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
 gi|147746793|gb|EDK53870.1| cold-shock domain family protein [Burkholderia mallei FMH]
 gi|147751777|gb|EDK58844.1| cold-shock domain family protein [Burkholderia mallei JHU]
 gi|157806110|gb|EDO83280.1| cold shock protein [Burkholderia pseudomallei 406e]
 gi|157808249|gb|EDO85419.1| cold shock protein [Burkholderia pseudomallei 406e]
 gi|160341384|gb|ABX14470.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
          ATCC 17616]
 gi|169653590|gb|EDS86283.1| cold shock protein [Burkholderia pseudomallei S13]
 gi|170137454|gb|EDT05694.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171095021|gb|EDT40044.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|171993997|gb|ACB64916.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MC40-6]
 gi|184212044|gb|EDU09087.1| cold shock protein [Burkholderia pseudomallei 1655]
 gi|189335306|dbj|BAG44376.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|217397073|gb|EEC37089.1| cold shock family protein [Burkholderia pseudomallei 576]
 gi|221168832|gb|EEE01300.1| cold shock protein [Burkholderia multivorans CGD1]
 gi|221174687|gb|EEE07119.1| cold shock protein [Burkholderia multivorans CGD2]
 gi|221180534|gb|EEE12937.1| cold shock protein [Burkholderia multivorans CGD2M]
 gi|237506154|gb|ACQ98472.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|238523194|gb|EEP86634.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
          horse 4]
 gi|242140100|gb|EES26502.1| cold shock family protein [Burkholderia pseudomallei 1106b]
 gi|243060670|gb|EES42856.1| cold-shock DNA-binding domain protein [Burkholderia mallei
          PRL-20]
 gi|254220743|gb|EET10127.1| cold shock family protein [Burkholderia pseudomallei 1710a]
 gi|325526419|gb|EGD04007.1| cold-shock domain-containing protein [Burkholderia sp. TJI49]
          Length = 67

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++ VQ   
Sbjct: 1  MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|84495365|ref|ZP_00994484.1| cold shock protein [Janibacter sp. HTCC2649]
 gi|84384858|gb|EAQ00738.1| cold shock protein [Janibacter sp. HTCC2649]
          Length = 67

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAIDTQGYRSLDENQQVEFEVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               AE ++ +
Sbjct: 58 G--PQAEQVRPL 67


>gi|251783434|ref|YP_002997739.1| cold shock protein [Streptococcus dysgalactiae subsp. equisimilis
          GGS_124]
 gi|242392066|dbj|BAH82525.1| cold shock protein [Streptococcus dysgalactiae subsp. equisimilis
          GGS_124]
          Length = 69

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+    TE+G DVF H SA+ + G   L EGQ V +D  +   
Sbjct: 3  MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQTNGFKTLEEGQKVEFDVEEGQR 58

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 59 G--PQAVNITKL 68


>gi|91199641|emb|CAI77996.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|96771688|emb|CAI78270.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|114049906|emb|CAK50923.1| putative cold shock protein [Streptomyces ambofaciens]
 gi|114050128|emb|CAK51161.1| putative cold shock protein [Streptomyces ambofaciens]
 gi|117164235|emb|CAJ87776.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|126347347|emb|CAJ89054.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
          Length = 67

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+P+   E G DVF+H SA+  +G  NL E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNGEKGFGFISPD---EGGPDVFVHFSAIQGSGFRNLEENQRVEFEITQGQR 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|332526271|ref|ZP_08402400.1| cold-shock DNA-binding protein family protein [Rubrivivax
          benzoatilyticus JA2]
 gi|332110105|gb|EGJ10733.1| cold-shock DNA-binding protein family protein [Rubrivivax
          benzoatilyticus JA2]
          Length = 79

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G DVF H SAV   G   L +G  V ++ VQ   
Sbjct: 1  MAVGTVKWFNDAKGFGFIEPEG---GGADVFAHFSAVQMDGFRTLKQGSRVEFELVQGPK 57

Query: 62 NGKYSAENLKLVPKSS 77
               A+N++ V  ++
Sbjct: 58 G--NLAQNIRPVATAT 71


>gi|256826371|ref|YP_003150331.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM
          20547]
 gi|256689764|gb|ACV07566.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM
          20547]
          Length = 67

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  +G    GDDVF+H SA+ + G  +L E Q V ++  Q   
Sbjct: 1  MAQGIVKWFNAEKGFGFIQQDG---GGDDVFVHFSAIQTNGYRSLEENQRVEFEITQGPK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--QQAENV 64


>gi|15616172|ref|NP_244477.1| cold-shock protein [Bacillus halodurans C-125]
 gi|10176234|dbj|BAB07329.1| cold-shock protein [Bacillus halodurans C-125]
          Length = 65

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  E     GDDVF+H SA+ + G   L EGQ V +D V+  A G
Sbjct: 2  QGKVKWFNAEKGFGFIERE----DGDDVFVHFSAINTDGFKTLDEGQSVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 57 PQAANVTKL 65


>gi|322384501|ref|ZP_08058183.1| cold-shock protein molecular chaperone RNA-helicase
          co-factor-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321150711|gb|EFX44186.1| cold-shock protein molecular chaperone RNA-helicase
          co-factor-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 76

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ V ++ V+ + 
Sbjct: 11 VQTGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIQGDGFKTLDEGQRVEFNVVEGN- 65

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 66 RGPQAENVVKL 76


>gi|251799709|ref|YP_003014440.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
 gi|247547335|gb|ACT04354.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
          Length = 65

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     TE G DVF+H SA+ + G   L EGQ V +D V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFIE----TEQGGDVFVHFSAIQAEGFKTLEEGQAVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|134282646|ref|ZP_01769350.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
 gi|254204405|ref|ZP_04910758.1| cold-shock domain family protein [Burkholderia mallei JHU]
 gi|134246203|gb|EBA46293.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
 gi|147753991|gb|EDK61055.1| cold-shock domain family protein [Burkholderia mallei JHU]
          Length = 83

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KG+GFITP+     GDD+F H S + S G   L E Q V+++  +  
Sbjct: 16 LMDTGTVKWFNETKGFGFITPDS---GGDDLFAHFSEIRSEGYKTLAENQKVSFE-TKRG 71

Query: 61 ANGKYSAENLKLV 73
            G  +A N+K +
Sbjct: 72 PKGLQAA-NIKPL 83


>gi|21322752|dbj|BAB78536.2| cold shock protein-1 [Triticum aestivum]
          Length = 229

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI+PE   +  +D+F+H+SA+ S G  +L E   V ++ +  D +G
Sbjct: 6  KGTVKWFNVTKGFGFISPE---DGSEDLFVHQSAIKSDGYRSLNENDTVEFEVITGD-DG 61

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 62 RTKASDVT 69


>gi|221195898|ref|ZP_03568948.1| conserved domain protein [Atopobium rimae ATCC 49626]
 gi|221184232|gb|EEE16629.1| conserved domain protein [Atopobium rimae ATCC 49626]
          Length = 67

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP+KGYGFI+ E     GDD+F+H S +   G   L EGQ V ++      
Sbjct: 1  MAQGTVKWFNPEKGYGFISRE----DGDDLFVHYSEIEMDGYKTLDEGQPVEFEIT-TGQ 55

Query: 62 NGKYSAENL 70
          NGK  A ++
Sbjct: 56 NGKLQASSV 64


>gi|299535166|ref|ZP_07048491.1| cold shock protein [Lysinibacillus fusiformis ZC1]
 gi|298729483|gb|EFI70033.1| cold shock protein [Lysinibacillus fusiformis ZC1]
          Length = 66

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI      + G+DVF+H + +   G   L EGQ V++D V+ + 
Sbjct: 1  MQQGIVKWFNNEKGYGFIE----CDDGEDVFVHFTGIQEEGFRTLEEGQKVSFDVVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  ++  +KL
Sbjct: 56 RGPQASNVVKL 66


>gi|237749127|ref|ZP_04579607.1| cold-shock DNA-binding domain-containing protein [Oxalobacter
          formigenes OXCC13]
 gi|229380489|gb|EEO30580.1| cold-shock DNA-binding domain-containing protein [Oxalobacter
          formigenes OXCC13]
          Length = 67

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITPE   + G+D+F H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MATGTVKWFNDSKGFGFITPE---DGGEDLFAHFSAINMNGFKTLKEGQKVQFEVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 58 G--KQASNIQSV 67


>gi|9968446|emb|CAC06102.1| cold shock protein [Lactobacillus plantarum]
          Length = 66

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT E    +G DVF+H SA+   G  +L EGQ V +D  ++D 
Sbjct: 1  MEHGTVKWFNADKGFGFITRE----NGSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESD- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPPAANVTK 65


>gi|253575890|ref|ZP_04853224.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844684|gb|EES72698.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 65

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     TE G DVF+H SA+ + G   L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFIE----TEEGGDVFVHFSAIQAEGFKTLEEGQSVEFEIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|291301635|ref|YP_003512913.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia
          nassauensis DSM 44728]
 gi|290570855|gb|ADD43820.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis
          DSM 44728]
          Length = 67

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G+     DVF+H SA+ + G   L+EGQ V ++  Q   
Sbjct: 1  MANGTVKWFNAEKGFGFIERDGNE---PDVFVHFSAIQTQGYRELSEGQKVEFEVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN+K +
Sbjct: 58 G--PQAENVKPL 67


>gi|317130282|ref|YP_004096564.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
 gi|315475230|gb|ADU31833.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
          Length = 67

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V ++ V+  
Sbjct: 1  MNMQGKVKWFNAEKGFGFIERE----GGDDVFVHFSAIEQEGFKTLEEGQEVEFEIVEG- 55

Query: 61 ANGKYSAENLKL 72
          A G  ++  +KL
Sbjct: 56 ARGPQASNVVKL 67


>gi|260655196|ref|ZP_05860684.1| conserved domain protein [Jonquetella anthropi E3_33 E1]
 gi|260630118|gb|EEX48312.1| conserved domain protein [Jonquetella anthropi E3_33 E1]
          Length = 65

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFIT    TE G DVF+H SA+   G  +L E   V +D V+ +  G
Sbjct: 2  KGTVKWFNATKGYGFIT----TEEGKDVFVHFSAINMTGYKSLDENDSVEFDVVEGE-KG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|291296663|ref|YP_003508061.1| cold-shock DNA-binding domain-containing protein [Meiothermus
          ruber DSM 1279]
 gi|290471622|gb|ADD29041.1| cold-shock DNA-binding domain protein [Meiothermus ruber DSM
          1279]
          Length = 68

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KGYGFI  E    SG DVF+H +A+   G  +L EG  V ++      
Sbjct: 1  MNKGTVKWFNAEKGYGFIAQE----SGPDVFVHFTAIQGQGFKSLNEGDRVEFEIEPGKN 56

Query: 62 NGKYSAENLKL 72
               A+N+KL
Sbjct: 57 GKGPQAKNVKL 67


>gi|172041529|ref|YP_001801243.1| putative cold shock protein [Corynebacterium urealyticum DSM
          7109]
 gi|171852833|emb|CAQ05809.1| putative cold shock protein [Corynebacterium urealyticum DSM
          7109]
          Length = 67

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI PE   +   D+F+H S + S+G   L E Q V ++  +   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAPE---DGSADLFVHYSEIQSSGFRTLEEDQKVEFEVGEGAK 57

Query: 62 NGKYSAENLKLV 73
               A+N++ +
Sbjct: 58 G--PQAQNVQPL 67


>gi|114330329|ref|YP_746551.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
          eutropha C91]
 gi|114307343|gb|ABI58586.1| cold shock protein E (CspE) [Nitrosomonas eutropha C91]
          Length = 67

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   +  +D+F H SA++  G   L EGQ V++D  Q   
Sbjct: 1  MTTGIVKWFNDAKGFGFITPD---DGSEDLFAHFSAISMNGFKTLREGQRVSFDVTQGQK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|116494613|ref|YP_806347.1| cold shock protein [Lactobacillus casei ATCC 334]
 gi|191638050|ref|YP_001987216.1| Similar to cold shock protein, CspA family [Lactobacillus casei
          BL23]
 gi|239631790|ref|ZP_04674821.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
          subsp. paracasei 8700:2]
 gi|301066162|ref|YP_003788185.1| cold shock protein [Lactobacillus casei str. Zhang]
 gi|116104763|gb|ABJ69905.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC
          334]
 gi|190712352|emb|CAQ66358.1| Similar to cold shock protein, CspA family [Lactobacillus casei
          BL23]
 gi|239526255|gb|EEQ65256.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
          subsp. paracasei 8700:2]
 gi|300438569|gb|ADK18335.1| Cold shock protein [Lactobacillus casei str. Zhang]
 gi|327382135|gb|AEA53611.1| Cold-shock domain family protein [Lactobacillus casei LC2W]
 gi|327385278|gb|AEA56752.1| Cold-shock domain family protein [Lactobacillus casei BD-II]
          Length = 66

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFIT E     G DVF+H SA+   G   L EGQ VT++   +D 
Sbjct: 1  MEHGTVKWFNAEKGYGFITRE----DGSDVFVHFSAIQGDGYKTLEEGQAVTFEVEDSDR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--PQAVNV 63


>gi|114765785|ref|ZP_01444880.1| cold shock family protein [Pelagibaca bermudensis HTCC2601]
 gi|114541892|gb|EAU44928.1| cold shock family protein [Roseovarius sp. HTCC2601]
          Length = 68

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G DVF+H SAV  AGL  L++ Q VTYD V+   
Sbjct: 1  MATGTVKWFNTTKGFGFIAPDA---GGKDVFVHISAVERAGLTGLSDDQKVTYD-VEAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESASNLAL 67


>gi|311029190|ref|ZP_07707280.1| cold-shock protein [Bacillus sp. m3-13]
          Length = 67

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E    +GDDVF+H SA+ S G  +L EGQ VT+D  Q   
Sbjct: 1  MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSEGFKSLDEGQKVTFDVEQGAR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--AQASNVQ 64


>gi|317127033|ref|YP_004093315.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
 gi|315471981|gb|ADU28584.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
          Length = 65

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V ++ V  D  G
Sbjct: 2  TGKVKWFNSEKGFGFIERE----GGDDVFVHFSAIQGEGFKTLEEGQEVEFEIVDGD-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|163744665|ref|ZP_02152025.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
 gi|161381483|gb|EDQ05892.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
          Length = 68

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G D+F+H SAV  AGL  L + Q VT+D V+   
Sbjct: 1  MATGTVKWFNTTKGFGFIAPDT---GGKDIFVHISAVERAGLTGLADNQKVTFD-VEAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N+ L
Sbjct: 57 DGRESASNIAL 67


>gi|84499705|ref|ZP_00997993.1| cold shock protein CspA [Oceanicola batsensis HTCC2597]
 gi|84392849|gb|EAQ05060.1| cold shock protein CspA [Oceanicola batsensis HTCC2597]
          Length = 68

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    +   D+F+H SA+  AGL  L +GQ VT+D  ++  
Sbjct: 1  MASGTVKWFNSTKGFGFIEP---ADGKKDIFVHISALERAGLSELKDGQAVTFDI-EDGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRSSAANLAL 67


>gi|32490926|ref|NP_871180.1| cold shock protein CspE [Wigglesworthia glossinidia endosymbiont
          of Glossina brevipalpis]
 gi|25166132|dbj|BAC24323.1| cspE [Wigglesworthia glossinidia endosymbiont of Glossina
          brevipalpis]
          Length = 69

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   N A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 60

Query: 64 KYSAENLKL 72
            +A    +
Sbjct: 61 PSAAHVTTI 69


>gi|197284318|ref|YP_002150190.1| cold shock protein CspE [Proteus mirabilis HI4320]
 gi|227358541|ref|ZP_03842866.1| cold shock protein [Proteus mirabilis ATCC 29906]
 gi|194681805|emb|CAR41046.1| putative cold shock protein [Proteus mirabilis HI4320]
 gi|227161252|gb|EEI46326.1| cold shock protein [Proteus mirabilis ATCC 29906]
          Length = 69

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   + A G
Sbjct: 5  KGNVKWFNETKGFGFITPE---DGSKDVFVHFSAIVSEGFKTLAEGQKVEFEVT-DGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVVAI 69


>gi|16974803|pdb|1HZA|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
 gi|16974804|pdb|1HZA|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
          Length = 67

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KGYGFI  E     G DVF+H +A+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|116491359|ref|YP_810903.1| cold-shock DNA-binding protein family protein [Oenococcus oeni
          PSU-1]
 gi|118586607|ref|ZP_01544047.1| cold-shock protein E [Oenococcus oeni ATCC BAA-1163]
 gi|290890924|ref|ZP_06553988.1| hypothetical protein AWRIB429_1378 [Oenococcus oeni AWRIB429]
 gi|116092084|gb|ABJ57238.1| cold-shock DNA-binding protein family [Oenococcus oeni PSU-1]
 gi|118432922|gb|EAV39648.1| cold-shock protein E [Oenococcus oeni ATCC BAA-1163]
 gi|290479323|gb|EFD87983.1| hypothetical protein AWRIB429_1378 [Oenococcus oeni AWRIB429]
          Length = 67

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKGYGFIT +    +G DVF+H SA+ + G  +L EGQ VT++ V++  
Sbjct: 1  METGTVKWFNADKGYGFITRD----NGGDVFVHFSAIQTDGFKSLDEGQKVTFE-VEDGQ 55

Query: 62 NGKYSAEN 69
           G  +   
Sbjct: 56 RGPQAVNV 63


>gi|332976448|gb|EGK13296.1| cold shock protein CspA [Desmospora sp. 8437]
          Length = 77

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFI  EG     DDVF+H SA+ S G  +L EG  V+++ VQ + 
Sbjct: 12 MIEGTVKWFNADKGFGFIEVEGR----DDVFVHFSAIQSEGFKSLDEGDKVSFEIVQGN- 66

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 67 RGDQAANVVKL 77


>gi|296129427|ref|YP_003636677.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
 gi|296021242|gb|ADG74478.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
          Length = 67

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +   + G DVF+H SA+ + G  +L EGQ V ++  Q   
Sbjct: 1  MAQGAVKWFNAEKGFGFIAQD---DGGADVFVHYSAIDTQGYRSLDEGQRVEFEITQGQK 57

Query: 62 NGKYSAENLKLV 73
               AE+++ +
Sbjct: 58 G--PQAEHVRPL 67


>gi|37725743|gb|AAO32341.1| cold shock protein 1 [Streptomyces sp. AA8321]
          Length = 65

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q VT+D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVTFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENIT 65


>gi|326692849|ref|ZP_08229854.1| cold shock protein [Leuconostoc argentinum KCTC 3773]
          Length = 66

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT E    +GDDVF H SA+ S G   L EGQ VT+D V++  
Sbjct: 1  METGTVKWFNGDKGFGFITRE----NGDDVFAHFSAIQSDGFKTLDEGQSVTFD-VESGD 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGLQAANIVK 65


>gi|312144474|ref|YP_003995920.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
 gi|311905125|gb|ADQ15566.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
          Length = 67

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M++ G++KW++  KG+GFI  E     GDDVF H SA+   G  NL EGQ V ++ V+ D
Sbjct: 1  MIYTGTVKWFDGKKGFGFIERE----DGDDVFAHFSAIQEDGFKNLEEGQEVEFEIVEGD 56

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 57 -RGPQAANIVKL 67


>gi|315499666|ref|YP_004088469.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
 gi|315417678|gb|ADU14318.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
          Length = 67

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   E G DVF+H SAV SAGL +L++GQ V+Y+   +  
Sbjct: 1  MALGTVKWFNSIKGFGFIQPD---EGGIDVFVHASAVESAGLRSLSDGQKVSYEVQLD-- 55

Query: 62 NGKYSAENLKLV 73
           G+ SA NL+++
Sbjct: 56 RGRSSASNLQII 67


>gi|20302392|emb|CAC80094.1| cold shock protein [Staphylococcus aureus]
          Length = 66

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DV +H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGE----NDVLVHFSAINQDGYKSLEEGQAVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|83950568|ref|ZP_00959301.1| cold shock family protein [Roseovarius nubinhibens ISM]
 gi|83838467|gb|EAP77763.1| cold shock family protein [Roseovarius nubinhibens ISM]
          Length = 68

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H SAV  AGL  L + Q VTYD  +   
Sbjct: 1  MANGTVKWFNTTKGYGFIAPD---DGGKDVFVHISAVERAGLTGLADNQKVTYDL-EAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N+ L
Sbjct: 57 DGRESAGNIVL 67


>gi|327441552|dbj|BAK17917.1| cold shock protein [Solibacillus silvestris StLB046]
          Length = 66

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ V +D  + + 
Sbjct: 1  MQQGTVKWFNSEKGFGFIEVE----GGNDVFVHFSAIQGEGFKTLDEGQKVEFDVEEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +    KL
Sbjct: 56 RGPQATNVTKL 66


>gi|205373098|ref|ZP_03225902.1| CspD [Bacillus coahuilensis m4-4]
          Length = 66

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI      E  +DVF+H SA+   G  +L EGQ V+++ V+  +
Sbjct: 1  MQNGKVKWFNNEKGFGFIE----IEGAEDVFVHFSAIEGEGYKSLEEGQEVSFEIVEG-S 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|49082304|gb|AAT50552.1| PA0456 [synthetic construct]
          Length = 70

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFITPE    SG DVF+H  A+   G   L EGQ V+++ VQ   
Sbjct: 3  RQNGTVKWFNETKGYGFITPE----SGPDVFVHFRAIEGNGFKTLAEGQKVSFEVVQGQK 58

Query: 62 NGKYSAENLKLV 73
               AE ++++
Sbjct: 59 G--MQAERVQVI 68


>gi|82702420|ref|YP_411986.1| cold-shock DNA-binding domain-containing protein [Nitrosospira
          multiformis ATCC 25196]
 gi|82410485|gb|ABB74594.1| cold-shock DNA-binding protein family [Nitrosospira multiformis
          ATCC 25196]
          Length = 67

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP    +  +D+F H SA+  +G   L EGQ VT++  Q   
Sbjct: 1  MATGTVKWFNEAKGFGFITP---VDGSEDLFAHFSAINMSGFKTLKEGQKVTFEITQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|23098474|ref|NP_691940.1| cold shock protein [Oceanobacillus iheyensis HTE831]
 gi|22776700|dbj|BAC12975.1| cold shock protein [Oceanobacillus iheyensis HTE831]
          Length = 66

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ GS+KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V++D  + + 
Sbjct: 1  MNTGSVKWFNAEKGFGFIEVE----GGDDVFVHFSAIQGEGFKTLEEGQSVSFDIEEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGPQAANVVK 65


>gi|126654483|ref|ZP_01726209.1| cold shock protein [Bacillus sp. B14905]
 gi|169828303|ref|YP_001698461.1| cold shock protein [Lysinibacillus sphaericus C3-41]
 gi|299537124|ref|ZP_07050427.1| cold shock protein [Lysinibacillus fusiformis ZC1]
 gi|126589048|gb|EAZ83279.1| cold shock protein [Bacillus sp. B14905]
 gi|168992791|gb|ACA40331.1| Cold shock protein [Lysinibacillus sphaericus C3-41]
 gi|298727365|gb|EFI67937.1| cold shock protein [Lysinibacillus fusiformis ZC1]
          Length = 66

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G   L EGQ V ++ V +  
Sbjct: 1  MKQGTVKWFNSEKGFGFIEVEGE----NDVFVHFSAIQGEGFKTLDEGQKVEFEVV-DGN 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAANVTKL 66


>gi|114569736|ref|YP_756416.1| cold-shock DNA-binding protein family protein [Maricaulis maris
          MCS10]
 gi|114340198|gb|ABI65478.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10]
          Length = 69

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI PE   +   DVF+H SAV  +G+  +TEGQ ++++ VQ+  
Sbjct: 1  MATGTVKFFNTTKGFGFIQPE---DGSTDVFVHISAVERSGMTTITEGQKLSFEVVQDKR 57

Query: 62 NGKYSAENLKLV 73
          +GK +AENL+ V
Sbjct: 58 SGKNAAENLQAV 69


>gi|328472753|gb|EGF43604.1| hypothetical protein LM220_15640 [Listeria monocytogenes 220]
          Length = 72

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V ++ V+   
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQR 56

Query: 62 NGK 64
            +
Sbjct: 57 GPQ 59


>gi|291616885|ref|YP_003519627.1| CspD [Pantoea ananatis LMG 20103]
 gi|291151915|gb|ADD76499.1| CspD [Pantoea ananatis LMG 20103]
 gi|327393313|dbj|BAK10735.1| cold shock-like protein CspD [Pantoea ananatis AJ13355]
          Length = 100

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 27 METGTVKWFNNAKGFGFICPIG---GGEDIFAHYSTIQMDGYRTLKAGQQVHFDVHQGPK 83

Query: 62 N 62
           
Sbjct: 84 G 84


>gi|294498189|ref|YP_003561889.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295703539|ref|YP_003596614.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294348126|gb|ADE68455.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294801198|gb|ADF38264.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N +KG+GFI   G     +DVF+H SA+ S G   L EGQ V ++ V+  
Sbjct: 1  MATTGTVKWFNSEKGFGFIEVPGE----NDVFVHFSAIQSEGFKTLEEGQKVEFEIVEGQ 56

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 57 -RGPQAENVVKL 67


>gi|163736889|ref|ZP_02144307.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
          BS107]
 gi|163740688|ref|ZP_02148082.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
          2.10]
 gi|161386546|gb|EDQ10921.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
          2.10]
 gi|161389493|gb|EDQ13844.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
          BS107]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE     G DVF+H SAV  +GL  L + Q V+Y+  +   
Sbjct: 1  MANGTVKWFNATKGYGFIEPES---GGKDVFVHISAVERSGLNGLNDNQKVSYEL-ETGR 56

Query: 62 NGKYSAENLKLV 73
          +GK SA +L+L+
Sbjct: 57 DGKQSAGSLELL 68


>gi|158423022|ref|YP_001524314.1| cold shock protein [Azorhizobium caulinodans ORS 571]
 gi|158329911|dbj|BAF87396.1| cold shock protein [Azorhizobium caulinodans ORS 571]
          Length = 69

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P+     G DVF+H SAV  AG+  L EGQ + ++ ++++ 
Sbjct: 1  MNFGTVKWFNATKGFGFIQPD---NGGSDVFVHISAVERAGMQGLAEGQKLQFEIIRDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKNSAGNLQ 67


>gi|320539592|ref|ZP_08039257.1| cold shock protein [Serratia symbiotica str. Tucson]
 gi|320030351|gb|EFW12365.1| cold shock protein [Serratia symbiotica str. Tucson]
          Length = 73

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G+DVF H S +   G   L  GQ V++D  Q   
Sbjct: 1  MEMGTVKWFNNAKGFGFICPES---GGEDVFAHYSTIKMDGYRTLKAGQQVSFDVYQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|326792190|ref|YP_004310011.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
 gi|326542954|gb|ADZ84813.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
          Length = 65

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V ++  Q +   
Sbjct: 2  TGTVKWFNAEKGFGFIARE----DGDDVFVHFSAIQGDGYKTLEEGQKVNFEITQGNRG- 56

Query: 64 KYSAENLK 71
             AEN+ 
Sbjct: 57 -AQAENVT 63


>gi|160894411|ref|ZP_02075187.1| hypothetical protein CLOL250_01963 [Clostridium sp. L2-50]
 gi|156863722|gb|EDO57153.1| hypothetical protein CLOL250_01963 [Clostridium sp. L2-50]
          Length = 71

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KGYGFI+   + +   DVF+H SA+   G   L EGQ VT+D  ++  
Sbjct: 1  MNNGTVKWFNAEKGYGFIS---NNDGSGDVFVHFSAIQGEGYKTLVEGQQVTFDTEEDPK 57

Query: 62 NG-KYSAENLKLVP 74
           G +  A N+ +V 
Sbjct: 58 GGSRTRATNVVIVK 71


>gi|118477138|ref|YP_894289.1| cold-shock DNA-binding protein family protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|228926734|ref|ZP_04089802.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228932984|ref|ZP_04095847.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|118416363|gb|ABK84782.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
          str. Al Hakam]
 gi|228826585|gb|EEM72356.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228832847|gb|EEM78416.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 77

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 14 QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 68

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 69 PQAANVVKL 77


>gi|226330617|ref|ZP_03806135.1| hypothetical protein PROPEN_04536 [Proteus penneri ATCC 35198]
 gi|225201412|gb|EEG83766.1| hypothetical protein PROPEN_04536 [Proteus penneri ATCC 35198]
          Length = 70

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFITP    +   DVF+H SA+ S    +L EGQ V++   +N A G
Sbjct: 6  TGTVKWFNDDKGFGFITP---KDGSKDVFVHFSAIQSDSFKSLKEGQEVSFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVIAL 70


>gi|68537049|ref|YP_251754.1| putative cold shock protein [Corynebacterium jeikeium K411]
 gi|260579394|ref|ZP_05847276.1| cold shock protein [Corynebacterium jeikeium ATCC 43734]
 gi|68264648|emb|CAI38136.1| putative cold shock protein [Corynebacterium jeikeium K411]
 gi|258602523|gb|EEW15818.1| cold shock protein [Corynebacterium jeikeium ATCC 43734]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+   +   DVF+H S +  +G   L E Q V ++  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPD---DGSSDVFVHYSEIQGSGFRTLEENQKVEFEIGEGAK 57

Query: 62 NGKYSAENLKLV 73
               A+N+  +
Sbjct: 58 G--PQAQNVTAL 67


>gi|310639812|ref|YP_003944570.1| cold shock-like protein csplb [Paenibacillus polymyxa SC2]
 gi|309244762|gb|ADO54329.1| Cold shock-like protein cspLB [Paenibacillus polymyxa SC2]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     G DVF+H SA+   G  +L EGQ V ++ V+ + 
Sbjct: 1  MQTGTVKWFNAEKGFGFIEVE----GGSDVFVHFSAIQGEGFKSLDEGQRVEFNVVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQAENVVKL 66


>gi|308049339|ref|YP_003912905.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM
          9799]
 gi|307631529|gb|ADN75831.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM
          9799]
          Length = 69

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFIT +     G DVF+H  A+   G   L EGQ V++D  Q    G
Sbjct: 5  TGTVKWFNEDKGFGFITQD---NGGADVFVHFRAIQGDGFKTLAEGQQVSFDIEQG-PKG 60

Query: 64 KYSAENLKL 72
            +A   K+
Sbjct: 61 PQAANVTKI 69


>gi|86157661|ref|YP_464446.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|197123033|ref|YP_002134984.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|220917823|ref|YP_002493127.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85774172|gb|ABC81009.1| cold-shock DNA-binding protein family [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|196172882|gb|ACG73855.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|219955677|gb|ACL66061.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI+ E     G+DVF+H +A+   G   L EG+ V +D  Q   
Sbjct: 1  MALGTVKWFNDAKGYGFISQE----GGEDVFVHHTAIQMDGFRTLKEGERVEFDVTQG-P 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 KGLQAANV 63


>gi|147679090|ref|YP_001213305.1| cold shock proteins [Pelotomaculum thermopropionicum SI]
 gi|146275187|dbj|BAF60936.1| cold shock proteins [Pelotomaculum thermopropionicum SI]
          Length = 65

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI  E     G DVF+H SA+   G   L EGQ V +D V+  A G 
Sbjct: 3  GKVKWFNQEKGYGFIERE----DGGDVFVHFSAIQEEGFKTLAEGQKVEFDIVEG-ARGP 57

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 58 QAANVIKL 65


>gi|190575401|ref|YP_001973246.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
 gi|194366737|ref|YP_002029347.1| cold-shock DNA-binding domain-containing protein
          [Stenotrophomonas maltophilia R551-3]
 gi|254524874|ref|ZP_05136929.1| putative 'Cold-shock' DNA-binding domain protein
          [Stenotrophomonas sp. SKA14]
 gi|190013323|emb|CAQ46957.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
 gi|194349541|gb|ACF52664.1| cold-shock DNA-binding domain protein [Stenotrophomonas
          maltophilia R551-3]
 gi|219722465|gb|EED40990.1| putative 'Cold-shock' DNA-binding domain protein
          [Stenotrophomonas sp. SKA14]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+PE   +   DVF H SA+ S G  +L EGQ VTYD  Q   
Sbjct: 1  MPNGTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVTYDVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 58 G--AQASNIT 65


>gi|326491571|dbj|BAJ94263.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 191

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI+P+   +  +D+F+H+S++ + G  +L EG++V +   + D +G
Sbjct: 8  KGTVKWFNDTKGFGFISPD---DGSEDLFVHQSSIKADGFRSLAEGEVVEFSVSEGD-DG 63

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 64 RTKAVDVT 71


>gi|327440173|dbj|BAK16538.1| cold shock protein [Solibacillus silvestris StLB046]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V ++ V +  
Sbjct: 1  MKQGTVKWFNSEKGFGFIELEGE----DDVFVHFSAIQGEGFKTLEEGQKVEFEVV-DGN 55

Query: 62 NGKYSAENLKL 72
           G  ++  +KL
Sbjct: 56 RGPQASNVIKL 66


>gi|114778644|ref|ZP_01453460.1| cold shock protein [Mariprofundus ferrooxydans PV-1]
 gi|114551109|gb|EAU53670.1| cold shock protein [Mariprofundus ferrooxydans PV-1]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +   + GDDVF+H SA+ + G  +L EGQ V ++  ++  
Sbjct: 1  MATGTVKWFNDTKGFGFIAQD---DGGDDVFVHFSAIQTDGFKSLQEGQKVEFEI-EDGQ 56

Query: 62 NGKYSAENLK 71
           G   A N+ 
Sbjct: 57 KGPQ-ARNVT 65


>gi|116696515|ref|YP_842091.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|113531014|emb|CAJ97361.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
          Length = 98

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G +KW+N  KG+GFI P+     GDD+F H S + + G  +L E Q V ++ V+N 
Sbjct: 17 IMQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEIRADGFKSLQENQRVQFE-VKNG 72

Query: 61 ANGKYSAE 68
            G  +A 
Sbjct: 73 PKGLQAAN 80


>gi|312795894|ref|YP_004028816.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
 gi|312167669|emb|CBW74672.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+G    G+D+F H S +   G  +L E Q VTY+ V+   
Sbjct: 1  METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRMDGFKSLQENQKVTYE-VKMGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|294500562|ref|YP_003564262.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295705915|ref|YP_003598990.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294350499|gb|ADE70828.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294803574|gb|ADF40640.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI      E G+DVF+H SA+   G  +L EGQ VT+D  Q   
Sbjct: 1  MTEGTVKWFNAEKGFGFIE----IEGGEDVFVHFSAIQGDGFKSLDEGQKVTFDIEQGQ- 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGAQAANVVK 65


>gi|261408402|ref|YP_003244643.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|315648512|ref|ZP_07901611.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|329929384|ref|ZP_08283132.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
 gi|261284865|gb|ACX66836.1| cold-shock DNA-binding domain protein [Paenibacillus sp.
          Y412MC10]
 gi|315276206|gb|EFU39552.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|328936471|gb|EGG32916.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
          Length = 65

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI+ E     G+DVF+H SA+   G  +L EGQ V +D  + +  G
Sbjct: 2  KGTVKWFNAEKGYGFISVE----GGEDVFVHFSAIQEEGFKSLEEGQAVEFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 57 PQAANVTKL 65


>gi|56696164|ref|YP_166520.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
 gi|56677901|gb|AAV94567.1| cold shock family protein [Ruegeria pomeroyi DSS-3]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H SAV  +GL  L + Q V+++ + +  
Sbjct: 1  MPTGTVKWFNATKGYGFIAPD---DGGKDVFVHISAVERSGLTGLADNQKVSFEML-DGR 56

Query: 62 NGKYSAENLKLV 73
          +G+  A ++K +
Sbjct: 57 DGRKMAGDIKPL 68


>gi|17987793|ref|NP_540427.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M]
 gi|62289409|ref|YP_221202.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699335|ref|YP_413909.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
          biovar Abortus 2308]
 gi|189023660|ref|YP_001934428.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
 gi|225626929|ref|ZP_03784968.1| cold shock protein CSPA [Brucella ceti str. Cudo]
 gi|225851957|ref|YP_002732190.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
          ATCC 23457]
 gi|237814894|ref|ZP_04593892.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
 gi|254688721|ref|ZP_05151975.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
          bv. 6 str. 870]
 gi|254693204|ref|ZP_05155032.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
          bv. 3 str. Tulya]
 gi|254696849|ref|ZP_05158677.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
          bv. 2 str. 86/8/59]
 gi|254701228|ref|ZP_05163056.1| ATP/GTP-binding site motif A, P-loop protein [Brucella suis bv. 5
          str. 513]
 gi|254707848|ref|ZP_05169676.1| ATP/GTP-binding site motif A, P-loop protein [Brucella
          pinnipedialis M163/99/10]
 gi|254709571|ref|ZP_05171382.1| ATP/GTP-binding site motif A, P-loop protein [Brucella
          pinnipedialis B2/94]
 gi|254713013|ref|ZP_05174824.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti
          M644/93/1]
 gi|254716633|ref|ZP_05178444.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti
          M13/05/1]
 gi|254718601|ref|ZP_05180412.1| ATP/GTP-binding site motif A, P-loop protein [Brucella sp. 83/13]
 gi|254729754|ref|ZP_05188332.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
          bv. 4 str. 292]
 gi|256031063|ref|ZP_05444677.1| ATP/GTP-binding site motif A, P-loop protein [Brucella
          pinnipedialis M292/94/1]
 gi|256044140|ref|ZP_05447047.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
          bv. 1 str. Rev.1]
 gi|256060557|ref|ZP_05450725.1| ATP/GTP-binding site motif A, P-loop protein [Brucella neotomae
          5K33]
 gi|256112943|ref|ZP_05453851.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
          bv. 3 str. Ether]
 gi|256159127|ref|ZP_05456948.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti
          M490/95/1]
 gi|256254466|ref|ZP_05460002.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti
          B1/94]
 gi|256256968|ref|ZP_05462504.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus
          bv. 9 str. C68]
 gi|256264533|ref|ZP_05467065.1| predicted protein [Brucella melitensis bv. 2 str. 63/9]
 gi|256368878|ref|YP_003106384.1| cold shock protein CspA [Brucella microti CCM 4915]
 gi|260168194|ref|ZP_05755005.1| cold shock protein CspA [Brucella sp. F5/99]
 gi|260545840|ref|ZP_05821581.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
          8038]
 gi|260563497|ref|ZP_05833983.1| ATP/GTP-binding site-containing protein A [Brucella melitensis
          bv. 1 str. 16M]
 gi|260754199|ref|ZP_05866547.1| cold shock protein cspA [Brucella abortus bv. 6 str. 870]
 gi|260757419|ref|ZP_05869767.1| cold shock protein cspA [Brucella abortus bv. 4 str. 292]
 gi|260761244|ref|ZP_05873587.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883224|ref|ZP_05894838.1| cold shock protein cspA [Brucella abortus bv. 9 str. C68]
 gi|261213446|ref|ZP_05927727.1| cold shock protein cspA [Brucella abortus bv. 3 str. Tulya]
 gi|261218434|ref|ZP_05932715.1| predicted protein [Brucella ceti M13/05/1]
 gi|261221638|ref|ZP_05935919.1| cold shock protein cspA [Brucella ceti B1/94]
 gi|261315336|ref|ZP_05954533.1| cold shock protein cspA [Brucella pinnipedialis M163/99/10]
 gi|261317099|ref|ZP_05956296.1| predicted protein [Brucella pinnipedialis B2/94]
 gi|261320717|ref|ZP_05959914.1| cold shock protein cspA [Brucella ceti M644/93/1]
 gi|261324552|ref|ZP_05963749.1| predicted protein [Brucella neotomae 5K33]
 gi|261751767|ref|ZP_05995476.1| predicted protein [Brucella suis bv. 5 str. 513]
 gi|261757654|ref|ZP_06001363.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
          F5/99]
 gi|265983577|ref|ZP_06096312.1| cold shock protein cspA [Brucella sp. 83/13]
 gi|265988135|ref|ZP_06100692.1| cold shock protein cspA [Brucella pinnipedialis M292/94/1]
 gi|265990551|ref|ZP_06103108.1| cold shock protein cspA [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994381|ref|ZP_06106938.1| cold shock protein cspA [Brucella melitensis bv. 3 str. Ether]
 gi|265997600|ref|ZP_06110157.1| cold shock protein cspA [Brucella ceti M490/95/1]
 gi|294851801|ref|ZP_06792474.1| cold shock protein [Brucella sp. NVSL 07-0026]
 gi|297247821|ref|ZP_06931539.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
          bv. 5 str. B3196]
 gi|306839881|ref|ZP_07472679.1| cold shock protein CSPA [Brucella sp. NF 2653]
 gi|306842293|ref|ZP_07474955.1| cold shock protein CSPA [Brucella sp. BO2]
 gi|306845051|ref|ZP_07477632.1| cold shock protein CSPA [Brucella sp. BO1]
 gi|17983518|gb|AAL52691.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M]
 gi|62195541|gb|AAX73841.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615436|emb|CAJ10405.1| ATP/GTP-binding site motif A (P-loop):Cold-shock DNA-binding
          domain [Brucella melitensis biovar Abortus 2308]
 gi|189019232|gb|ACD71954.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
 gi|225618586|gb|EEH15629.1| cold shock protein CSPA [Brucella ceti str. Cudo]
 gi|225640322|gb|ACO00236.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
          ATCC 23457]
 gi|237789731|gb|EEP63941.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
 gi|255999036|gb|ACU47435.1| cold shock protein CspA [Brucella microti CCM 4915]
 gi|260097247|gb|EEW81122.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
          8038]
 gi|260153513|gb|EEW88605.1| ATP/GTP-binding site-containing protein A [Brucella melitensis
          bv. 1 str. 16M]
 gi|260667737|gb|EEX54677.1| cold shock protein cspA [Brucella abortus bv. 4 str. 292]
 gi|260671676|gb|EEX58497.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674307|gb|EEX61128.1| cold shock protein cspA [Brucella abortus bv. 6 str. 870]
 gi|260872752|gb|EEX79821.1| cold shock protein cspA [Brucella abortus bv. 9 str. C68]
 gi|260915053|gb|EEX81914.1| cold shock protein cspA [Brucella abortus bv. 3 str. Tulya]
 gi|260920222|gb|EEX86875.1| cold shock protein cspA [Brucella ceti B1/94]
 gi|260923523|gb|EEX90091.1| predicted protein [Brucella ceti M13/05/1]
 gi|261293407|gb|EEX96903.1| cold shock protein cspA [Brucella ceti M644/93/1]
 gi|261296322|gb|EEX99818.1| predicted protein [Brucella pinnipedialis B2/94]
 gi|261300532|gb|EEY04029.1| predicted protein [Brucella neotomae 5K33]
 gi|261304362|gb|EEY07859.1| cold shock protein cspA [Brucella pinnipedialis M163/99/10]
 gi|261737638|gb|EEY25634.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
          F5/99]
 gi|261741520|gb|EEY29446.1| predicted protein [Brucella suis bv. 5 str. 513]
 gi|262552068|gb|EEZ08058.1| cold shock protein cspA [Brucella ceti M490/95/1]
 gi|262765494|gb|EEZ11283.1| cold shock protein cspA [Brucella melitensis bv. 3 str. Ether]
 gi|263001335|gb|EEZ13910.1| cold shock protein cspA [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094866|gb|EEZ18604.1| predicted protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264660332|gb|EEZ30593.1| cold shock protein cspA [Brucella pinnipedialis M292/94/1]
 gi|264662169|gb|EEZ32430.1| cold shock protein cspA [Brucella sp. 83/13]
 gi|294820390|gb|EFG37389.1| cold shock protein [Brucella sp. NVSL 07-0026]
 gi|297174990|gb|EFH34337.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
          bv. 5 str. B3196]
 gi|306274683|gb|EFM56472.1| cold shock protein CSPA [Brucella sp. BO1]
 gi|306287601|gb|EFM59052.1| cold shock protein CSPA [Brucella sp. BO2]
 gi|306405067|gb|EFM61348.1| cold shock protein CSPA [Brucella sp. NF 2653]
 gi|326408455|gb|ADZ65520.1| ATP/GTP-binding site motif A (P-loop) [Brucella melitensis M28]
 gi|326538172|gb|ADZ86387.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis
          M5-90]
          Length = 69

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI P+   +   DVF+H SAV  AGL +L EGQ V Y+ V +  
Sbjct: 1  MANGTVKFFNSTKGFGFIQPD---DGSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKSAAANLE 67


>gi|87119411|ref|ZP_01075308.1| cold-shock DNA-binding domain protein [Marinomonas sp. MED121]
 gi|86164887|gb|EAQ66155.1| cold-shock DNA-binding domain protein [Marinomonas sp. MED121]
          Length = 97

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  E     G DVF+H  A+   G   L EGQ VT++  Q      
Sbjct: 35 GIVKWFNDEKGFGFIERE----GGPDVFVHFRAINGTGRRTLQEGQKVTFEVTQGQKG-- 88

Query: 65 YSAENLKLV 73
            AEN+ +V
Sbjct: 89 PQAENVSIV 97


>gi|307545830|ref|YP_003898309.1| cold shock protein CspA [Halomonas elongata DSM 2581]
 gi|307217854|emb|CBV43124.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas
          elongata DSM 2581]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+   ++GDD+F H S + + G  +L +GQ V++D  Q   
Sbjct: 1  MATGTVKWFNDTKGFGFISPD---DNGDDLFAHFSEIQAEGFKSLQDGQKVSFDVTQGKK 57

Query: 62 NGKYSAENLKLV 73
               A N+K+V
Sbjct: 58 G--LQASNIKVV 67


>gi|254391125|ref|ZP_05006332.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|294814384|ref|ZP_06773027.1| Cold shock-like protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442775|ref|ZP_08217509.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|197704819|gb|EDY50631.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|294326983|gb|EFG08626.1| Cold shock-like protein [Streptomyces clavuligerus ATCC 27064]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L E Q+V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINATGFRSLEENQVVNFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENVS 65


>gi|194016016|ref|ZP_03054631.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|194012371|gb|EDW21938.1| conserved domain protein [Bacillus pumilus ATCC 7061]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ VT+D  Q   
Sbjct: 1  MEQGTVKWFNAEKGFGFIERE----EGDDVFVHFSAIQGDGFKSLDEGQKVTFDVEQGSR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--AQAANVQ 64


>gi|116255743|ref|YP_771576.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|209546040|ref|YP_002277930.1| cold-shock protein [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|241666510|ref|YP_002984594.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|115260391|emb|CAK03495.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|209538897|gb|ACI58830.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|240861967|gb|ACS59632.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 69

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G D F+H SAV  AG+  + EGQ + Y+  +++ 
Sbjct: 1  MTTGTVKWFNSTKGFGFIQPD---DGGADAFVHISAVERAGMREIVEGQKIGYELERDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKMSACNLQ 67


>gi|20803889|emb|CAD31467.1| PROBABLE TRANSCRIPTION REGULATOR COLD SHOCK PROTEIN
          [Mesorhizobium loti R7A]
          Length = 70

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AGL NL +GQ + Y+  Q+  
Sbjct: 1  MATGTVKWFNSTKGFGFIQPD---DDGQDVFVHISAVERAGLSNLVDGQKIKYEIEQDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK SA +L  V
Sbjct: 58 SGKSSAGSLSKV 69


>gi|16974807|pdb|1HZC|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
 gi|16974808|pdb|1HZC|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To
          Study Determinants Of Protein Stability
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI  E     G DVF+H +A+   G   L EGQ V+++ VQ + 
Sbjct: 1  MQEGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQAVSFEIVQGN- 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGPQAANVVK 65


>gi|329727663|gb|EGG64119.1| major cold shock protein CspA [Staphylococcus aureus subsp.
          aureus 21172]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG       VF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  MKQGTVKWFNAEKGFGFIEVEGENN----VFVHFSAINQDGYKSLEEGQAVEFEVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANVVKL 66


>gi|312200500|ref|YP_004020561.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
 gi|311231836|gb|ADP84691.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L EGQ V +D  Q   
Sbjct: 1  MASGTVKWFNSEKGFGFIAVDG---GGPDVFVHYSAIQTDGFRSLDEGQRVEFDIEQGQK 57

Query: 62 NGKYS 66
            +  
Sbjct: 58 GPQAG 62


>gi|237800557|ref|ZP_04589018.1| cold shock domain family protein [Pseudomonas syringae pv. oryzae
          str. 1_6]
 gi|331023417|gb|EGI03474.1| cold shock domain family protein [Pseudomonas syringae pv. oryzae
          str. 1_6]
          Length = 96

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G  +  +D+F H SA+   G   L  GQ V++D +Q   
Sbjct: 1  MLNGKVKWFNNAKGYGFILEDGKPD--EDLFAHYSAIQMEGYKTLKAGQPVSFDIIQGPK 58

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 59 G--NHAVNIS 66


>gi|199598334|ref|ZP_03211754.1| Cold shock protein [Lactobacillus rhamnosus HN001]
 gi|258508067|ref|YP_003170818.1| CspA family cold shock protein_ [Lactobacillus rhamnosus GG]
 gi|258539340|ref|YP_003173839.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
 gi|199590787|gb|EDY98873.1| Cold shock protein [Lactobacillus rhamnosus HN001]
 gi|257147994|emb|CAR86967.1| Cold shock protein [Lactobacillus rhamnosus GG]
 gi|257151016|emb|CAR89988.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
 gi|259649389|dbj|BAI41551.1| cold shock protein [Lactobacillus rhamnosus GG]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFIT E     G DVF+H SA+   G   L EGQ VT++   +D 
Sbjct: 1  MEHGTVKWFNAEKGYGFITRE----DGSDVFVHFSAIQGEGYKTLEEGQAVTFEVEDSDR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--PQAVNV 63


>gi|126650394|ref|ZP_01722622.1| cold shock protein [Bacillus sp. B14905]
 gi|126593044|gb|EAZ87026.1| cold shock protein [Bacillus sp. B14905]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G DVF H SA+   G  +L EGQ V +   ++  
Sbjct: 1  MTQGTVKWFNSEKGFGFIEVE----GGQDVFAHFSAIQGEGFKSLEEGQKVEFTI-EDGQ 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANIVKL 66


>gi|254461151|ref|ZP_05074567.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium HTCC2083]
 gi|206677740|gb|EDZ42227.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacteraceae
          bacterium HTCC2083]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+DVF+H SAV  +GL  L + Q ++++  ++  
Sbjct: 1  MPNGTVKWFNTTKGFGFIEPEG---GGNDVFVHISAVERSGLTGLADNQKISFEL-EDGR 56

Query: 62 NGKYSAENLKLV 73
          +G+  A NL L+
Sbjct: 57 DGRQMAANLALL 68


>gi|115376123|ref|ZP_01463367.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310824812|ref|YP_003957170.1| Cold shock family protein, CspA [Stigmatella aurantiaca DW4/3-1]
 gi|115366846|gb|EAU65837.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397884|gb|ADO75343.1| Cold shock family protein, CspA [Stigmatella aurantiaca DW4/3-1]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+T +G    G+DVF H SA+   G   L EGQ V++D  +   
Sbjct: 1  MATGTVKWFNDAKGFGFLTQDG---GGEDVFCHHSAINMDGFRTLAEGQKVSFDVTRGPK 57

Query: 62 NGKYSAENLK 71
               A+N++
Sbjct: 58 G--LQAQNVR 65


>gi|313902955|ref|ZP_07836350.1| cold-shock DNA-binding protein family [Thermaerobacter
          subterraneus DSM 13965]
 gi|313466679|gb|EFR62198.1| cold-shock DNA-binding protein family [Thermaerobacter
          subterraneus DSM 13965]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KGYGFIT +   +   DVF+H SA+  AG   L EGQ VT+D V+ +   
Sbjct: 2  TGTVKWFNAEKGYGFITRD---DGQGDVFVHFSAIVGAGYRTLEEGQKVTFDVVEGEKGP 58

Query: 64 KYSAENLKLV 73
          K  A+N+ ++
Sbjct: 59 K--AQNVIVL 66


>gi|309389742|gb|ADO77622.1| cold-shock DNA-binding protein family [Halanaerobium praevalens
          DSM 2228]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          MV+ G++KW++  KGYGFI  E     GDDVF+H SA+   G   L EGQ V ++ V+ D
Sbjct: 1  MVYTGNVKWFDEKKGYGFIERE----DGDDVFVHFSALQQEGFKTLEEGQEVEFEIVEGD 56

Query: 61 ANGKYSAENLKLV 73
                AEN++++
Sbjct: 57 RG--PQAENVEVI 67


>gi|308178448|ref|YP_003917854.1| cold shock protein [Arthrobacter arilaitensis Re117]
 gi|307745911|emb|CBT76883.1| cold shock protein [Arthrobacter arilaitensis Re117]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI P+       DVF H SA+ + G   L EGQ V ++ V+   
Sbjct: 1  MATGIVKWFNAEKGFGFIAPDSGD---PDVFAHFSAIQTQGFRTLDEGQKVEFEVVEG-P 56

Query: 62 NGKYSAE 68
           G  +A+
Sbjct: 57 KGLQAAD 63


>gi|297565513|ref|YP_003684485.1| cold-shock DNA-binding domain-containing protein [Meiothermus
          silvanus DSM 9946]
 gi|296849962|gb|ADH62977.1| cold-shock DNA-binding domain protein [Meiothermus silvanus DSM
          9946]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI  E     G DVF+H SA+ + G   L EGQ V ++      
Sbjct: 1  MKTGTVKWFNAEKGYGFIAQE----DGPDVFVHYSAIETDGFRTLQEGQRVQFEVEPGKN 56

Query: 62 NGKYSAENLK 71
               A  ++
Sbjct: 57 GKGPQAAKVR 66


>gi|116335083|ref|YP_802578.1| cold shock protein [Candidatus Carsonella ruddii PV]
 gi|116235364|dbj|BAF35212.1| cold shock protein [Candidatus Carsonella ruddii PV]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+   + GDD+F+H S +   G  +L +GQ V++D  Q   
Sbjct: 1  MSNGTVKWFNDTKGFGFISPD---DGGDDLFVHFSEIRVDGFKSLQDGQRVSFDVTQGKK 57

Query: 62 NGKYSAENLKLV 73
               A N+K++
Sbjct: 58 G--LQASNVKVI 67


>gi|110678721|ref|YP_681728.1| cold shock protein CspA-related protein, putative [Roseobacter
          denitrificans OCh 114]
 gi|109454837|gb|ABG31042.1| cold shock protein CspA-related protein, putative [Roseobacter
          denitrificans OCh 114]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G      DVF+H SAV  AGL  L + Q VT+D  +   
Sbjct: 1  MATGTVKWFNATKGFGFIAPDG---GSKDVFVHISAVERAGLTGLNDDQKVTFDI-EAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESASNLAL 67


>gi|55980144|ref|YP_143441.1| cold shock protein [Thermus thermophilus HB8]
 gi|291463422|pdb|3A0J|A Chain A, Crystal Structure Of Cold Shock Protein 1 From Thermus
          Thermophilus Hb8
 gi|291463423|pdb|3A0J|B Chain B, Crystal Structure Of Cold Shock Protein 1 From Thermus
          Thermophilus Hb8
 gi|27374959|dbj|BAC53777.1| cold shock protein homolog [Thermus thermophilus]
 gi|55771557|dbj|BAD69998.1| cold shock protein [Thermus thermophilus HB8]
          Length = 73

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  EG T    DVF+H +A+ + G   L EG +VT+D      
Sbjct: 1  MQKGRVKWFNAEKGYGFIEREGDT----DVFVHYTAINAKGFRTLNEGDIVTFDVEPGRN 56

Query: 62 NGKYSAENLKLVPKS 76
               A N+ +V  +
Sbjct: 57 GKGPQAVNVTVVEPA 71


>gi|238789312|ref|ZP_04633099.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
 gi|238722644|gb|EEQ14297.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641]
          Length = 84

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y   Q+   
Sbjct: 19 KTGQVKWFNEAKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPR 74

Query: 63 GKYSAENLKL 72
          G  +A  + L
Sbjct: 75 GPAAANVIAL 84


>gi|254461497|ref|ZP_05074913.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium HTCC2083]
 gi|206678086|gb|EDZ42573.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacteraceae
          bacterium HTCC2083]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G      DVF+H SAV  +GL  L + Q VT+D  +   
Sbjct: 1  MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVTFDI-EPGR 56

Query: 62 NGKYSAENLKL 72
          +G+ +A N+ L
Sbjct: 57 DGREAAINIAL 67


>gi|220918462|ref|YP_002493766.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|219956316|gb|ACL66700.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +G    G+DVF H +A+ + G  +L EGQ V +D  +   
Sbjct: 1  MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQAEGFRSLAEGQKVEFDVTKGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--LQAANVRPI 67


>gi|146306295|ref|YP_001186760.1| cold-shock DNA-binding protein family protein [Pseudomonas
           mendocina ymp]
 gi|145574496|gb|ABP84028.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
          Length = 205

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++KW+N  KG+GFI+ +    SG+D+F+H  A+   G   L EGQ V +  +Q D 
Sbjct: 135 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRVLIEGQRVEFSVMQRDK 190

Query: 62  NGKYSAENL 70
                AE++
Sbjct: 191 G--LQAEDV 197


>gi|81428762|ref|YP_395762.1| cold shock protein CspA family protein [Lactobacillus sakei
          subsp. sakei 23K]
 gi|78610404|emb|CAI55454.1| Similar to cold shock protein, CspA family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFIT     E G DVF H SA+   G  +L EGQ V++D V++  
Sbjct: 1  MNNGTVKWFNADKGFGFIT----GEDGKDVFAHFSAIQGDGYKSLDEGQAVSFD-VEDSD 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQATNIVKL 66


>gi|209884203|ref|YP_002288060.1| hypothetical protein OCAR_5060 [Oligotropha carboxidovorans OM5]
 gi|209872399|gb|ACI92195.1| conserved domain protein [Oligotropha carboxidovorans OM5]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P G    G DVF+H SAV  AGL +L EGQ + ++ V N  
Sbjct: 1  MAKGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLSSLNEGQTIEFEEVAN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66


>gi|322833919|ref|YP_004213946.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|321169120|gb|ADW74819.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
          Length = 69

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA++S G   L EGQ V ++   N A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAISSNGFKTLAEGQRVEFEIT-NGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|294499464|ref|YP_003563164.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295704814|ref|YP_003597889.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294349401|gb|ADE69730.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294802473|gb|ADF39539.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  E     GDDVF+H SA+ S G  +L EGQ VT+D  Q   
Sbjct: 1  MEQGKVKWFNAEKGFGFIERE----GGDDVFVHFSAIQSEGFKSLDEGQAVTFDVEQGQ- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|258652266|ref|YP_003201422.1| cold-shock DNA-binding domain-containing protein [Nakamurella
          multipartita DSM 44233]
 gi|258555491|gb|ACV78433.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
          DSM 44233]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI+P+   +   DVF+H SA++  G  +L EGQ V ++  Q+  
Sbjct: 1  MAQGTVKWFNAEKGYGFISPD---DGSGDVFVHYSAISGTGYKSLEEGQRVNFEVEQS-P 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPQA 61


>gi|149915750|ref|ZP_01904275.1| glycine dehydrogenase [Roseobacter sp. AzwK-3b]
 gi|149810332|gb|EDM70177.1| glycine dehydrogenase [Roseobacter sp. AzwK-3b]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G DVF+H SAV  +GL  L + Q VTYD V+   
Sbjct: 1  MANGTVKWFNSTKGFGFIAPET---GGKDVFVHISAVERSGLTGLADDQKVTYD-VEAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL+L
Sbjct: 57 DGRESATNLQL 67


>gi|148259024|ref|YP_001233151.1| cold-shock DNA-binding domain-containing protein [Acidiphilium
          cryptum JF-5]
 gi|326402151|ref|YP_004282232.1| hypothetical protein ACMV_00030 [Acidiphilium multivorum AIU301]
 gi|146400705|gb|ABQ29232.1| putative cold-shock DNA-binding domain protein [Acidiphilium
          cryptum JF-5]
 gi|325049012|dbj|BAJ79350.1| hypothetical protein ACMV_00030 [Acidiphilium multivorum AIU301]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    + G DVF+H +AV +AG+  L EGQ ++Y+  Q   
Sbjct: 1  MAIGTVKWFNTTKGFGFIVP---QDGGKDVFVHITAVQAAGMRGLNEGQKISYEVTQE-- 55

Query: 62 NGKYSAENLKLV 73
           GK +A NLK V
Sbjct: 56 RGKAAATNLKAV 67


>gi|69247317|ref|ZP_00604299.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
 gi|257879979|ref|ZP_05659632.1| cold-shock protein [Enterococcus faecium 1,230,933]
 gi|257883090|ref|ZP_05662743.1| cold-shock protein [Enterococcus faecium 1,231,502]
 gi|257884117|ref|ZP_05663770.1| cold-shock protein [Enterococcus faecium 1,231,501]
 gi|257890488|ref|ZP_05670141.1| cold-shock protein [Enterococcus faecium 1,231,410]
 gi|257894415|ref|ZP_05674068.1| cold-shock protein [Enterococcus faecium 1,231,408]
 gi|258614362|ref|ZP_05712132.1| cold-shock domain-contain protein [Enterococcus faecium DO]
 gi|260558929|ref|ZP_05831116.1| cold-shock protein [Enterococcus faecium C68]
 gi|261209452|ref|ZP_05923815.1| cold-shock protein [Enterococcus faecium TC 6]
 gi|289567727|ref|ZP_06448016.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
 gi|293553822|ref|ZP_06674437.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293559767|ref|ZP_06676287.1| cold shock protein [Enterococcus faecium E1162]
 gi|293571661|ref|ZP_06682682.1| cold-shock protein [Enterococcus faecium E980]
 gi|294616363|ref|ZP_06696156.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294619946|ref|ZP_06699319.1| cold shock protein [Enterococcus faecium E1679]
 gi|294622017|ref|ZP_06701160.1| cold shock protein [Enterococcus faecium U0317]
 gi|314940163|ref|ZP_07847341.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|314942420|ref|ZP_07849263.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|314950182|ref|ZP_07853467.1| major cold shock protein CspA [Enterococcus faecium TX0082]
 gi|314952304|ref|ZP_07855315.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|314994253|ref|ZP_07859556.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|314997168|ref|ZP_07862154.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|68194887|gb|EAN09358.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
 gi|257814207|gb|EEV42965.1| cold-shock protein [Enterococcus faecium 1,230,933]
 gi|257818748|gb|EEV46076.1| cold-shock protein [Enterococcus faecium 1,231,502]
 gi|257819955|gb|EEV47103.1| cold-shock protein [Enterococcus faecium 1,231,501]
 gi|257826848|gb|EEV53474.1| cold-shock protein [Enterococcus faecium 1,231,410]
 gi|257830794|gb|EEV57401.1| cold-shock protein [Enterococcus faecium 1,231,408]
 gi|260075037|gb|EEW63352.1| cold-shock protein [Enterococcus faecium C68]
 gi|260076580|gb|EEW64344.1| cold-shock protein [Enterococcus faecium TC 6]
 gi|289160477|gb|EFD08488.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
 gi|291590877|gb|EFF22593.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291593803|gb|EFF25304.1| cold shock protein [Enterococcus faecium E1679]
 gi|291598407|gb|EFF29481.1| cold shock protein [Enterococcus faecium U0317]
 gi|291602028|gb|EFF32265.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291606250|gb|EFF35664.1| cold shock protein [Enterococcus faecium E1162]
 gi|291608331|gb|EFF37632.1| cold-shock protein [Enterococcus faecium E980]
 gi|313588742|gb|EFR67587.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|313591340|gb|EFR70185.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|313595563|gb|EFR74408.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|313598820|gb|EFR77665.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|313640602|gb|EFS05182.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|313643492|gb|EFS08072.1| major cold shock protein CspA [Enterococcus faecium TX0082]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFIT     E+G+DVF+H SA+   G   L EGQ VT+D  +   
Sbjct: 1  METGTVKWFNSEKGFGFIT----AENGNDVFVHFSAIQGDGFKTLEEGQAVTFDVEEGQR 56

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 57 G--PQATNVT 64


>gi|297537796|ref|YP_003673565.1| cold-shock DNA-binding domain-containing protein [Methylotenera
          sp. 301]
 gi|297257143|gb|ADI28988.1| cold-shock DNA-binding domain protein [Methylotenera sp. 301]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H SA+  AG  +L EGQ V+++   +  
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVEAGYKSLKEGQRVSFEVT-DGP 56

Query: 62 NGKYSAENLK 71
           GK  A N++
Sbjct: 57 KGKQ-ASNIQ 65


>gi|295696398|ref|YP_003589636.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
 gi|295412000|gb|ADG06492.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
          Length = 65

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI  E     G DVF+H SA+   G  +L EGQLV +D V+  A G
Sbjct: 2  QGRVKWFNAEKGYGFIERE----DGGDVFVHFSAIQQDGFKSLEEGQLVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +K+
Sbjct: 57 PQAANVVKV 65


>gi|238028419|ref|YP_002912650.1| Cold shock transcription regulator protein [Burkholderia glumae
          BGR1]
 gi|330818078|ref|YP_004361783.1| Cold shock transcription regulator protein [Burkholderia gladioli
          BSR3]
 gi|237877613|gb|ACR29946.1| Cold shock transcription regulator protein [Burkholderia glumae
          BGR1]
 gi|327370471|gb|AEA61827.1| Cold shock transcription regulator protein [Burkholderia gladioli
          BSR3]
          Length = 73

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++ VQ   
Sbjct: 7  MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQGPK 63

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 64 G--KQASNIQ 71


>gi|268590420|ref|ZP_06124641.1| conserved domain protein [Providencia rettgeri DSM 1131]
 gi|291314334|gb|EFE54787.1| conserved domain protein [Providencia rettgeri DSM 1131]
          Length = 69

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE   +   DVF+H SA+   G   L EGQ V ++  +  A G
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIMGDGFKTLAEGQKVEFEITEG-AKG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PSAANVIPL 69


>gi|167747330|ref|ZP_02419457.1| hypothetical protein ANACAC_02047 [Anaerostipes caccae DSM 14662]
 gi|167653308|gb|EDR97437.1| hypothetical protein ANACAC_02047 [Anaerostipes caccae DSM 14662]
          Length = 91

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFIT E +   G+DVF+H S +A+ G  +L +GQ VT++  Q + 
Sbjct: 25 MNNGTVKWFNSTKGFGFITNEST---GEDVFVHFSGIAAEGFKSLEDGQKVTFETTQGNR 81

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 82 G--LQAVNV 88


>gi|89071112|ref|ZP_01158315.1| cold shock family protein [Oceanicola granulosus HTCC2516]
 gi|89043360|gb|EAR49581.1| cold shock family protein [Oceanicola granulosus HTCC2516]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI PE     G DVF+H SAV  AGL  L + Q VTYD V+   
Sbjct: 1  MAKGTVKWFNSTKGFGFIAPET---GGKDVFVHISAVERAGLTGLADDQKVTYD-VEAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N++L
Sbjct: 57 DGRESAVNIQL 67


>gi|326523669|dbj|BAJ93005.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 231

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI+PE   +  +D+F+H+SA+ S G  +L E  +V +D +  D +G
Sbjct: 6  KGTVKWFNVTKGFGFISPE---DGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGD-DG 61

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 62 RTKASDVT 69


>gi|330975335|gb|EGH75401.1| cold-shock protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 202

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 190 LQAEDVIAALPR 201


>gi|330968898|gb|EGH68964.1| cold-shock protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 202

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 190 LQAEDVIAALPR 201


>gi|330964818|gb|EGH65078.1| cold-shock protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 202

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 190 LQAEDVIAALPR 201


>gi|330959259|gb|EGH59519.1| cold-shock protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 189

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 122 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 176

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 177 LQAEDVIAALPR 188


>gi|330950615|gb|EGH50875.1| cold-shock protein [Pseudomonas syringae Cit 7]
          Length = 202

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 190 LQAEDVIAALPR 201


>gi|330896121|gb|EGH28342.1| cold-shock protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 202

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 190 LQAEDVIAALPR 201


>gi|312962766|ref|ZP_07777254.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
           fluorescens WH6]
 gi|311282983|gb|EFQ61576.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
           fluorescens WH6]
          Length = 200

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 133 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 187

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 188 LQAEDVIAALPR 199


>gi|289674663|ref|ZP_06495553.1| cold-shock protein [Pseudomonas syringae pv. syringae FF5]
          Length = 202

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 190 LQAEDVIAALPR 201


>gi|257869999|ref|ZP_05649652.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2]
 gi|257804163|gb|EEV32985.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ E     G DVF+H SA+   G   L EGQ VT+D  ++D 
Sbjct: 1  MEQGTVKWFNAEKGFGFISRE----DGTDVFVHFSAIQGEGFKTLEEGQAVTFDVEESDR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--PQAVNV 63


>gi|257487017|ref|ZP_05641058.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|298488215|ref|ZP_07006251.1| DNA-binding cold-shock protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157273|gb|EFH98357.1| DNA-binding cold-shock protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330988962|gb|EGH87065.1| cold-shock protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 202

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 190 LQAEDVIAALPR 201


>gi|237800212|ref|ZP_04588673.1| cold-shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023069|gb|EGI03126.1| cold-shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 202

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 190 LQAEDVIAALPR 201


>gi|213969178|ref|ZP_03397317.1| Cold-shock DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|301384826|ref|ZP_07233244.1| cold-shock protein [Pseudomonas syringae pv. tomato Max13]
 gi|302130616|ref|ZP_07256606.1| cold-shock protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213926176|gb|EEB59732.1| Cold-shock DNA-binding protein [Pseudomonas syringae pv. tomato T1]
          Length = 202

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 190 LQAEDVIAALPR 201


>gi|70732095|ref|YP_261851.1| cold-shock domain-contain protein [Pseudomonas fluorescens Pf-5]
 gi|68346394|gb|AAY94000.1| cold-shock domain family protein [Pseudomonas fluorescens Pf-5]
          Length = 201

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 134 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 188

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 189 LQAEDVIAALPR 200


>gi|77460636|ref|YP_350143.1| cold-shock DNA-binding protein [Pseudomonas fluorescens Pf0-1]
 gi|77384639|gb|ABA76152.1| putative cold shock protein [Pseudomonas fluorescens Pf0-1]
          Length = 200

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 133 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 187

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 188 LQAEDVIAALPR 199


>gi|328957164|ref|YP_004374550.1| cold-shock protein [Carnobacterium sp. 17-4]
 gi|328673488|gb|AEB29534.1| cold-shock protein [Carnobacterium sp. 17-4]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG+    DDVF+H SA+ S G  +L EGQ VT+D  + + 
Sbjct: 1  MEQGTVKWFNAEKGFGFIEREGA----DDVFVHFSAIQSEGFKSLEEGQAVTFDVEEGN- 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGPQAANV 63


>gi|331695978|ref|YP_004332217.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326950667|gb|AEA24364.1| cold-shock DNA-binding domain protein [Pseudonocardia
          dioxanivorans CB1190]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGF+ P+G    G DVF+H SA+   G  +L EGQ V++D  Q   
Sbjct: 1  MAEGTVKWFNSEKGYGFLAPDG---GGADVFVHYSAIQVNGYKSLDEGQRVSFDIEQGQK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|299534886|ref|ZP_07048215.1| cold shock protein [Lysinibacillus fusiformis ZC1]
 gi|298729731|gb|EFI70277.1| cold shock protein [Lysinibacillus fusiformis ZC1]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G DVF H SA+   G  +L EGQ V +  V+   
Sbjct: 1  MTQGTVKWFNAEKGFGFIEVE----GGQDVFAHFSAIQGEGFKSLEEGQKVEF-TVEEGQ 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGPQAANIVKL 66


>gi|271961744|ref|YP_003335940.1| cold-shock DNA-binding domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270504919|gb|ACZ83197.1| putative cold-shock DNA-binding domain protein [Streptosporangium
          roseum DSM 43021]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+G      DVF+H S +   G  +L +GQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPDG---GAPDVFVHFSEIQGNGYRSLEDGQRVEFEITQGQK 57

Query: 62 NGKYS 66
            + S
Sbjct: 58 GPQAS 62


>gi|157692698|ref|YP_001487160.1| cold shock protein [Bacillus pumilus SAFR-032]
 gi|194016855|ref|ZP_03055468.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|157681456|gb|ABV62600.1| cold shock protein [Bacillus pumilus SAFR-032]
 gi|194011461|gb|EDW21030.1| conserved domain protein [Bacillus pumilus ATCC 7061]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     GDDVF+H +A+   G  +L EGQ V+++ V+ + 
Sbjct: 1  MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIEGDGYKSLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 RGPQAANVTKI 66


>gi|220933692|ref|YP_002512591.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219995002|gb|ACL71604.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI PE   E G DVF+H SA+ + G   L EGQ V++   Q   
Sbjct: 1  MSTGIVKWFNESKGFGFIAPE---EGGADVFVHYSAIQAEGFKTLAEGQRVSFQVQQGPK 57

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 58 G--LQAVNVT 65


>gi|325267631|ref|ZP_08134283.1| cold shock transcription regulator protein [Kingella
          denitrificans ATCC 33394]
 gi|324980981|gb|EGC16641.1| cold shock transcription regulator protein [Kingella
          denitrificans ATCC 33394]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D      
Sbjct: 1  MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFDVTTGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|315659813|ref|ZP_07912672.1| cold-shock protein [Staphylococcus lugdunensis M23590]
 gi|315495101|gb|EFU83437.1| cold-shock protein [Staphylococcus lugdunensis M23590]
          Length = 82

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E     G+DVF+H S +A  G   L EGQ V +D  +   
Sbjct: 17 MNNGTVKWFNAEKGFGFIERE----DGNDVFVHFSGIAGEGYKTLEEGQKVEFDITEGQR 72

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 73 G--DQATNVVVM 82


>gi|229542762|ref|ZP_04431822.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
 gi|229327182|gb|EEN92857.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI        GDDVF+H SA+   G   L EGQ VT+D  Q  +
Sbjct: 1  MEQGTVKWFNGEKGFGFIE----RNGGDDVFVHFSAIQGEGFKTLDEGQKVTFDVEQG-S 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGPQAANV 63


>gi|72383861|ref|YP_293215.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72123204|gb|AAZ65358.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S V  +G  +L EGQ V+++  Q   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---DGGDDLFAHFSEVQGSGFKSLQEGQKVSFEVKQG-P 56

Query: 62 NGKYSA 67
           GK +A
Sbjct: 57 KGKQAA 62


>gi|50915110|ref|YP_061082.1| cold shock protein [Streptococcus pyogenes MGAS10394]
 gi|50904184|gb|AAT87899.1| Cold shock protein [Streptococcus pyogenes MGAS10394]
          Length = 69

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+    TE+G DVF H SA+ ++G   L EGQ V +D  +   
Sbjct: 3  MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQTSGFKTLEEGQKVAFDVEEGQR 58

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 59 G--PQAVNITKL 68


>gi|108763346|ref|YP_634172.1| cold-shock protein CspE [Myxococcus xanthus DK 1622]
 gi|4193398|gb|AAD10037.1| CspE [Myxococcus xanthus]
 gi|108467226|gb|ABF92411.1| cold-shock protein CspE [Myxococcus xanthus DK 1622]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +G    G+DVF H +A+   G   L EGQ V ++  +   
Sbjct: 1  MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLAEGQKVEFEVTRGPK 57

Query: 62 NGKYSAENLK 71
               A+N++
Sbjct: 58 G--LQAQNVR 65


>gi|299132091|ref|ZP_07025286.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 gi|298592228|gb|EFI52428.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP KGYGFI P G    G DVF+H SAV  AGL +L EGQ + ++ V N  
Sbjct: 1  MAKGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLTSLNEGQTIEFEEVAN-- 55

Query: 62 NGKYSAENLKL 72
           GK SAENLK+
Sbjct: 56 RGKTSAENLKV 66


>gi|238920383|ref|YP_002933898.1| cold shock domain protein CspD, [Edwardsiella ictaluri 93-146]
 gi|238869952|gb|ACR69663.1| cold shock domain protein CspD, putative [Edwardsiella ictaluri
          93-146]
          Length = 73

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P      GDD+F H +A+   G   L  GQ V +D      
Sbjct: 1  METGTVKWFNNAKGFGFICP---ASGGDDIFAHYTAIQMEGYRTLKAGQQVQFDL-HTGP 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G ++   + ++ + ++
Sbjct: 57 KGNHANTIIPILSEPAS 73


>gi|226311237|ref|YP_002771131.1| cold shock protein [Brevibacillus brevis NBRC 100599]
 gi|226094185|dbj|BAH42627.1| cold shock protein [Brevibacillus brevis NBRC 100599]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KG+GFI  +     GDDVF+H SA+   G  +L EGQ V +D V+N  
Sbjct: 1  MERGRVKWFNSEKGFGFIERD----GGDDVFVHFSAIQGEGYKSLDEGQEVEFD-VENGQ 55

Query: 62 NGKYSAENLKL 72
           G  +    KL
Sbjct: 56 RGPQATNVRKL 66


>gi|310815352|ref|YP_003963316.1| cold shock family protein [Ketogulonicigenium vulgare Y25]
 gi|308754087|gb|ADO42016.1| cold shock family protein [Ketogulonicigenium vulgare Y25]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+G      DVF+H SAV  +GL  L + Q V +D  ++  
Sbjct: 1  MATGTVKWFNTTKGYGFIAPDG---GSKDVFVHISAVQRSGLEGLKDNQKVRFDI-ESSR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL +
Sbjct: 57 DGRESAVNLSV 67


>gi|114767284|ref|ZP_01446124.1| cold shock family protein [Pelagibaca bermudensis HTCC2601]
 gi|114540590|gb|EAU43663.1| cold shock family protein [Roseovarius sp. HTCC2601]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE   E G DVF+H SAV  +GL  L + Q V+YD  +   
Sbjct: 1  MPSGTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYDLKEG-R 56

Query: 62 NGKYSAENLKLV 73
          +G+  A +LK +
Sbjct: 57 DGRMMASDLKPL 68


>gi|29375934|ref|NP_815088.1| cold-shock domain-contain protein [Enterococcus faecalis V583]
 gi|227518631|ref|ZP_03948680.1| cold-shock protein [Enterococcus faecalis TX0104]
 gi|227553162|ref|ZP_03983211.1| cold-shock protein [Enterococcus faecalis HH22]
 gi|229545951|ref|ZP_04434676.1| cold-shock protein [Enterococcus faecalis TX1322]
 gi|229550143|ref|ZP_04438868.1| cold-shock protein [Enterococcus faecalis ATCC 29200]
 gi|255972920|ref|ZP_05423506.1| cold-shock protein [Enterococcus faecalis T1]
 gi|255975974|ref|ZP_05426560.1| cold-shock protein [Enterococcus faecalis T2]
 gi|256618947|ref|ZP_05475793.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
 gi|256762374|ref|ZP_05502954.1| cold-shock protein [Enterococcus faecalis T3]
 gi|256853004|ref|ZP_05558374.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
 gi|256958857|ref|ZP_05563028.1| cold-shock protein [Enterococcus faecalis DS5]
 gi|256962049|ref|ZP_05566220.1| cold-shock protein [Enterococcus faecalis Merz96]
 gi|256965247|ref|ZP_05569418.1| cold-shock protein [Enterococcus faecalis HIP11704]
 gi|257078889|ref|ZP_05573250.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|257082664|ref|ZP_05577025.1| cold-shock domain-containing protein [Enterococcus faecalis
          E1Sol]
 gi|257085373|ref|ZP_05579734.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|257086868|ref|ZP_05581229.1| cold-shock protein [Enterococcus faecalis D6]
 gi|257089761|ref|ZP_05584122.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257415977|ref|ZP_05592971.1| cold-shock protein [Enterococcus faecalis AR01/DG]
 gi|257419179|ref|ZP_05596173.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257422743|ref|ZP_05599733.1| cold shock protein [Enterococcus faecalis X98]
 gi|293383071|ref|ZP_06628989.1| conserved domain protein [Enterococcus faecalis R712]
 gi|293387776|ref|ZP_06632320.1| conserved domain protein [Enterococcus faecalis S613]
 gi|294779559|ref|ZP_06744953.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          PC1.1]
 gi|300860884|ref|ZP_07106971.1| cold shock protein CspB [Enterococcus faecalis TUSoD Ef11]
 gi|307271144|ref|ZP_07552427.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|307273351|ref|ZP_07554596.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|307277496|ref|ZP_07558588.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|307279174|ref|ZP_07560232.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
 gi|307288138|ref|ZP_07568148.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
 gi|307291351|ref|ZP_07571235.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|312900628|ref|ZP_07759925.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
 gi|312904110|ref|ZP_07763278.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|312907339|ref|ZP_07766330.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
 gi|312909956|ref|ZP_07768804.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
 gi|312952370|ref|ZP_07771245.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|29343396|gb|AAO81158.1| cold-shock domain family protein [Enterococcus faecalis V583]
 gi|227073926|gb|EEI11889.1| cold-shock protein [Enterococcus faecalis TX0104]
 gi|227177688|gb|EEI58660.1| cold-shock protein [Enterococcus faecalis HH22]
 gi|229304729|gb|EEN70725.1| cold-shock protein [Enterococcus faecalis ATCC 29200]
 gi|229308914|gb|EEN74901.1| cold-shock protein [Enterococcus faecalis TX1322]
 gi|255963938|gb|EET96414.1| cold-shock protein [Enterococcus faecalis T1]
 gi|255968846|gb|EET99468.1| cold-shock protein [Enterococcus faecalis T2]
 gi|256598474|gb|EEU17650.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
 gi|256683625|gb|EEU23320.1| cold-shock protein [Enterococcus faecalis T3]
 gi|256711463|gb|EEU26501.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
 gi|256949353|gb|EEU65985.1| cold-shock protein [Enterococcus faecalis DS5]
 gi|256952545|gb|EEU69177.1| cold-shock protein [Enterococcus faecalis Merz96]
 gi|256955743|gb|EEU72375.1| cold-shock protein [Enterococcus faecalis HIP11704]
 gi|256986919|gb|EEU74221.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|256990694|gb|EEU77996.1| cold-shock domain-containing protein [Enterococcus faecalis
          E1Sol]
 gi|256993403|gb|EEU80705.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|256994898|gb|EEU82200.1| cold-shock protein [Enterococcus faecalis D6]
 gi|256998573|gb|EEU85093.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257157805|gb|EEU87765.1| cold-shock protein [Enterococcus faecalis ARO1/DG]
 gi|257161007|gb|EEU90967.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257164567|gb|EEU94527.1| cold shock protein [Enterococcus faecalis X98]
 gi|291079736|gb|EFE17100.1| conserved domain protein [Enterococcus faecalis R712]
 gi|291082846|gb|EFE19809.1| conserved domain protein [Enterococcus faecalis S613]
 gi|294453349|gb|EFG21757.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          PC1.1]
 gi|295112888|emb|CBL31525.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76]
 gi|300849923|gb|EFK77673.1| cold shock protein CspB [Enterococcus faecalis TUSoD Ef11]
 gi|306497582|gb|EFM67115.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|306500874|gb|EFM70192.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
 gi|306504299|gb|EFM73511.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
 gi|306505761|gb|EFM74939.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|306509878|gb|EFM78903.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|306512642|gb|EFM81291.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|310626367|gb|EFQ09650.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
 gi|310629754|gb|EFQ13037.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|310632586|gb|EFQ15869.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|311289914|gb|EFQ68470.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
 gi|311292109|gb|EFQ70665.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
 gi|315027392|gb|EFT39324.1| major cold shock protein CspA [Enterococcus faecalis TX2137]
 gi|315030013|gb|EFT41945.1| major cold shock protein CspA [Enterococcus faecalis TX4000]
 gi|315033768|gb|EFT45700.1| major cold shock protein CspA [Enterococcus faecalis TX0017]
 gi|315036854|gb|EFT48786.1| major cold shock protein CspA [Enterococcus faecalis TX0027]
 gi|315145675|gb|EFT89691.1| major cold shock protein CspA [Enterococcus faecalis TX2141]
 gi|315147863|gb|EFT91879.1| major cold shock protein CspA [Enterococcus faecalis TX4244]
 gi|315150659|gb|EFT94675.1| major cold shock protein CspA [Enterococcus faecalis TX0012]
 gi|315153333|gb|EFT97349.1| major cold shock protein CspA [Enterococcus faecalis TX0031]
 gi|315155889|gb|EFT99905.1| major cold shock protein CspA [Enterococcus faecalis TX0043]
 gi|315157943|gb|EFU01960.1| major cold shock protein CspA [Enterococcus faecalis TX0312]
 gi|315160238|gb|EFU04255.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
 gi|315164246|gb|EFU08263.1| major cold shock protein CspA [Enterococcus faecalis TX1302]
 gi|315166660|gb|EFU10677.1| major cold shock protein CspA [Enterococcus faecalis TX1341]
 gi|315170056|gb|EFU14073.1| major cold shock protein CspA [Enterococcus faecalis TX1342]
 gi|315174446|gb|EFU18463.1| major cold shock protein CspA [Enterococcus faecalis TX1346]
 gi|315575578|gb|EFU87769.1| major cold shock protein CspA [Enterococcus faecalis TX0309B]
 gi|315578455|gb|EFU90646.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
 gi|315579980|gb|EFU92171.1| major cold shock protein CspA [Enterococcus faecalis TX0309A]
 gi|323480602|gb|ADX80041.1| Major cold shock protein, CspB [Enterococcus faecalis 62]
 gi|327535008|gb|AEA93842.1| cold shock protein CspA [Enterococcus faecalis OG1RF]
 gi|329571445|gb|EGG53132.1| major cold shock protein CspA [Enterococcus faecalis TX1467]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT     E+G+DVF+H SA+   G   L EGQ VT++  +   
Sbjct: 1  METGTVKWFNSDKGFGFIT----AENGNDVFVHFSAIQGDGFKTLEEGQAVTFEIEEGQR 56

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 57 G--PQATNVT 64


>gi|33596619|ref|NP_884262.1| cold shock-like protein [Bordetella parapertussis 12822]
 gi|33601234|ref|NP_888794.1| cold shock-like protein [Bordetella bronchiseptica RB50]
 gi|33573320|emb|CAE37303.1| cold shock-like protein [Bordetella parapertussis]
 gi|33575669|emb|CAE32747.1| cold shock-like protein [Bordetella bronchiseptica RB50]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI P+   +   D+F H S + S G  +L E Q V+++  Q   
Sbjct: 1  MATGIVKWFNAEKGYGFIMPD---DGSKDLFAHYSEIRSEGYKSLQENQRVSFEVGQGPK 57

Query: 62 NGKYSAENLKLV 73
              SA+N+K++
Sbjct: 58 G--PSAKNIKVI 67


>gi|332669153|ref|YP_004452161.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332338191|gb|AEE44774.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
          484]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFITP G    G D+F+H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGYGFITPTG---GGQDLFVHFSAIQVDGYRTLEEGQQVDFEVGQGTK 57

Query: 62 NGKYSAENLKLV 73
               AE ++ V
Sbjct: 58 G--PQAEQVRPV 67


>gi|110679166|ref|YP_682173.1| cold shock family protein-related protein, putative [Roseobacter
          denitrificans OCh 114]
 gi|163735034|ref|ZP_02142471.1| cold shock family protein-related protein, putative [Roseobacter
          litoralis Och 149]
 gi|109455282|gb|ABG31487.1| cold shock family protein-related protein, putative [Roseobacter
          denitrificans OCh 114]
 gi|161391816|gb|EDQ16148.1| cold shock family protein-related protein, putative [Roseobacter
          litoralis Och 149]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PEG    G DVF+H SAV  +GL  L + Q V ++  +   
Sbjct: 1  MPTGTVKWFNTTKGYGFIAPEG---GGSDVFVHISAVERSGLTGLADDQKVDFELTEG-R 56

Query: 62 NGKYSAENLKLV 73
          +G+  A +LKL+
Sbjct: 57 DGRQMASDLKLL 68


>gi|72383849|ref|YP_293203.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72123192|gb|AAZ65346.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 67

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S V  +G  +L EGQ V+++  Q   
Sbjct: 1  MATGTVKWFNDTKGFGFITPD---DGGDDLFAHFSEVQGSGFKSLQEGQKVSFEVKQG-P 56

Query: 62 NGKYSA 67
           GK +A
Sbjct: 57 KGKQAA 62


>gi|83951672|ref|ZP_00960404.1| cold shock family protein [Roseovarius nubinhibens ISM]
 gi|83836678|gb|EAP75975.1| cold shock family protein [Roseovarius nubinhibens ISM]
          Length = 68

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H SAV  +GL  L + Q V Y+  Q+  
Sbjct: 1  MPTGTVKWFNTTKGYGFIAPD---DGGKDVFVHISAVERSGLTGLADEQKVGYEL-QDGR 56

Query: 62 NGKYSAENLKLV 73
          +G+  A +L L+
Sbjct: 57 DGRQMASDLTLL 68


>gi|167768567|ref|ZP_02440620.1| hypothetical protein CLOSS21_03126 [Clostridium sp. SS2/1]
 gi|317498676|ref|ZP_07956968.1| cold-shock' DNA-binding domain-containing protein
          [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710091|gb|EDS20670.1| hypothetical protein CLOSS21_03126 [Clostridium sp. SS2/1]
 gi|291560528|emb|CBL39328.1| cold-shock DNA-binding protein family [butyrate-producing
          bacterium SSC/2]
 gi|316894018|gb|EFV16208.1| cold-shock' DNA-binding domain-containing protein
          [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 66

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI+ E    SGDDVF+H SA+   G   L EGQ V+++  +   
Sbjct: 1  MSNGTVKWFNAEKGYGFISQE----SGDDVFVHFSAIQGKGFKTLEEGQSVSFEIEEG-P 55

Query: 62 NGKYSAENLKL 72
           GK ++   KL
Sbjct: 56 RGKQASNVTKL 66


>gi|296115724|ref|ZP_06834350.1| cold-shock DNA-binding domain protein [Gluconacetobacter hansenii
          ATCC 23769]
 gi|295977701|gb|EFG84453.1| cold-shock DNA-binding domain protein [Gluconacetobacter hansenii
          ATCC 23769]
          Length = 68

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  +   +   DVF+H SAV  AGL  L EGQ V+Y+  +   
Sbjct: 1  MATGTVKWFNAQKGFGFLEAD---DGTADVFVHISAVERAGLHGLNEGQKVSYEL-ETGR 56

Query: 62 NGKYSAENLKLV 73
          NGK SA NL++V
Sbjct: 57 NGKTSAANLQVV 68


>gi|227551933|ref|ZP_03981982.1| cold-shock protein [Enterococcus faecium TX1330]
 gi|257886902|ref|ZP_05666555.1| cold-shock protein [Enterococcus faecium 1,141,733]
 gi|257895473|ref|ZP_05675126.1| cold-shock protein [Enterococcus faecium Com12]
 gi|257898089|ref|ZP_05677742.1| cold-shock protein [Enterococcus faecium Com15]
 gi|293378339|ref|ZP_06624508.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
 gi|293568617|ref|ZP_06679932.1| cold-shock protein [Enterococcus faecium E1071]
 gi|227178934|gb|EEI59906.1| cold-shock protein [Enterococcus faecium TX1330]
 gi|257822956|gb|EEV49888.1| cold-shock protein [Enterococcus faecium 1,141,733]
 gi|257832038|gb|EEV58459.1| cold-shock protein [Enterococcus faecium Com12]
 gi|257836001|gb|EEV61075.1| cold-shock protein [Enterococcus faecium Com15]
 gi|291588577|gb|EFF20410.1| cold-shock protein [Enterococcus faecium E1071]
 gi|292643203|gb|EFF61344.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
          Length = 66

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFIT     E+G+DVF+H SA+   G   L EGQ VT+D  +   
Sbjct: 1  METGTVKWFNSEKGFGFIT----AENGNDVFVHFSAIQGDGFKTLEEGQTVTFDVEEGQR 56

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 57 G--PQATNVT 64


>gi|149202227|ref|ZP_01879200.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
 gi|149144325|gb|EDM32356.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035]
          Length = 68

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+G    G DVF+H SAV  AGL  L + Q V +D  +   
Sbjct: 1  MATGTVKWFNATKGYGFIAPDG---GGKDVFVHISAVERAGLTGLADNQKVKFDI-EAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N+ L
Sbjct: 57 DGRESASNIVL 67


>gi|256374377|ref|YP_003098037.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
 gi|255918680|gb|ACU34191.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
          Length = 67

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  +G    G DVF+H +A+ ++G  +L E Q VT++  Q   
Sbjct: 1  MATGKVKWFNAEKGFGFIEQDG---GGPDVFVHFTAINASGYRSLEENQAVTFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               AEN++
Sbjct: 58 G--PQAENVQ 65


>gi|115379755|ref|ZP_01466829.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115363242|gb|EAU62403.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 85

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +G    G+DVF H +A+ + G  +LTEGQ V ++  +   
Sbjct: 19 MATGVVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQADGFRSLTEGQRVEFEVSRGPK 75

Query: 62 NGKYSAENLKLV 73
               A+N+K +
Sbjct: 76 G--LQAQNVKPI 85


>gi|119386361|ref|YP_917416.1| cold-shock DNA-binding domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119376956|gb|ABL71720.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
          PD1222]
          Length = 80

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P      G DVF+H SA+  A + +L +GQ V+++  +   
Sbjct: 13 MANGTVKWFNATKGFGFIAP---ANGGKDVFVHISALERANISHLADGQAVSFEI-ETGR 68

Query: 62 NGKYSAENLKL 72
          +G+ SA +L L
Sbjct: 69 DGRQSARDLAL 79


>gi|169334115|ref|ZP_02861308.1| hypothetical protein ANASTE_00508 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258832|gb|EDS72798.1| hypothetical protein ANASTE_00508 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 70

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KGYGFI+ +   E+G+DVF+H SA++  G  +L EGQ VTYD   +  
Sbjct: 1  MNNGTVKWFNQEKGYGFISND---ETGEDVFVHYSAISGEGFKSLNEGQKVTYDVEADTK 57

Query: 62 NG-KYSAENL 70
          N  ++ A N+
Sbjct: 58 NKSRFRAVNV 67


>gi|164688479|ref|ZP_02212507.1| hypothetical protein CLOBAR_02124 [Clostridium bartlettii DSM
          16795]
 gi|164602892|gb|EDQ96357.1| hypothetical protein CLOBAR_02124 [Clostridium bartlettii DSM
          16795]
          Length = 66

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI+ EG      DVF+H SA+   G  +L EGQ V +D V+  A
Sbjct: 1  MKTGVVKWFNNEKGFGFISVEGEG----DVFVHFSAIQCDGYKSLEEGQNVEFDVVEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A  ++L
Sbjct: 56 KGPQAANVVRL 66


>gi|85715497|ref|ZP_01046478.1| cold shock protein [Nitrobacter sp. Nb-311A]
 gi|85697692|gb|EAQ35568.1| cold shock protein [Nitrobacter sp. Nb-311A]
          Length = 70

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFI P+     G DVF+H SAV  AGL +L EG  ++Y+ V N   G
Sbjct: 6  TGTVKWFNGQKGYGFIQPDS---GGKDVFVHISAVERAGLNSLNEGDKISYEVVAN--RG 60

Query: 64 KYSAENLKL 72
          K SAENL++
Sbjct: 61 KESAENLRV 69


>gi|116669342|ref|YP_830275.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
          FB24]
 gi|116609451|gb|ABK02175.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
          Length = 67

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFIT +GS   GDDVF+H SA+   G   L EGQ V ++  + + 
Sbjct: 1  MALGTVKWFNAEKGYGFITVDGS---GDDVFVHWSAIEREGYRALDEGQRVQFEVGEGEK 57

Query: 62 NGKYSAENLK 71
               AEN++
Sbjct: 58 G--PQAENVR 65


>gi|119775193|ref|YP_927933.1| cold-shock DNA-binding domain-containing protein [Shewanella
          amazonensis SB2B]
 gi|119767693|gb|ABM00264.1| cold-shock DNA-binding protein family [Shewanella amazonensis
          SB2B]
          Length = 68

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   E G+DVF H S +   G   L  GQ V ++  Q   
Sbjct: 1  MASGTVKWFNNAKGFGFICPD---EGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEQGPK 57

Query: 62 NGKYSA 67
              SA
Sbjct: 58 GMHASA 63


>gi|313890412|ref|ZP_07824043.1| cold shock protein CspA [Streptococcus pseudoporcinus SPIN 20026]
 gi|332523883|ref|ZP_08400135.1| cold shock protein CspA [Streptococcus porcinus str. Jelinkova
          176]
 gi|313121255|gb|EFR44363.1| cold shock protein CspA [Streptococcus pseudoporcinus SPIN 20026]
 gi|332315147|gb|EGJ28132.1| cold shock protein CspA [Streptococcus porcinus str. Jelinkova
          176]
          Length = 67

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+    TE G DVF H SA+ S G   L EGQ V +D  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFIS----TEEGQDVFAHFSAIQSDGFKTLDEGQKVEFDVEEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--PQAVNITKL 66


>gi|163791280|ref|ZP_02185694.1| cold-shock domain family protein [Carnobacterium sp. AT7]
 gi|159873421|gb|EDP67511.1| cold-shock domain family protein [Carnobacterium sp. AT7]
          Length = 66

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG+    DDVF+H SA+ + G  +L EGQ VT+D  + + 
Sbjct: 1  MEQGTVKWFNAEKGFGFIEREGA----DDVFVHFSAIQTDGFKSLEEGQTVTFDVEEGN- 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGPQAANV 63


>gi|157369915|ref|YP_001477904.1| cold-shock DNA-binding domain-containing protein [Serratia
          proteamaculans 568]
 gi|157321679|gb|ABV40776.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
          Length = 73

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V++D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVSFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|297196688|ref|ZP_06914086.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297153348|gb|EFH32317.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 67

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP+KG+GFI  +G    G DVF+H SA+AS G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNPEKGFGFIEQDG---GGPDVFVHYSAIASTGFRELFEGQKVQFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENVT 65


>gi|225181192|ref|ZP_03734638.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
 gi|225168161|gb|EEG76966.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
          Length = 65

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI        G+DVF+H SA+ + G   L EGQ V +D V+ +  G
Sbjct: 2  QGKVKWFNAEKGFGFIE----RPDGEDVFVHFSAIQAEGFKTLEEGQDVEFDVVEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +++
Sbjct: 57 PQAANVVRI 65


>gi|116251065|ref|YP_766903.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|209548412|ref|YP_002280329.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|241203661|ref|YP_002974757.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|115255713|emb|CAK06794.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|209534168|gb|ACI54103.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|240857551|gb|ACS55218.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 69

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N  KG+GFI P+   +   DVF+H SAV  AG+  L EGQ + YD V++  
Sbjct: 1  MNSGVVKWFNGTKGFGFIQPD---DGSTDVFVHISAVERAGMRELVEGQKIRYDLVRDKK 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKNSADNLQ 67


>gi|116510999|ref|YP_808215.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
          subsp. cremoris SK11]
 gi|125623057|ref|YP_001031540.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|3892590|emb|CAA76698.1| cold shock protein E [Lactococcus lactis subsp. cremoris MG1363]
 gi|116106653|gb|ABJ71793.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
          cremoris SK11]
 gi|124491865|emb|CAL96786.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|300069804|gb|ADJ59204.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris
          NZ9000]
          Length = 65

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFIT    TE G+DVF H SA+ + G   L EGQ VT+D  +   
Sbjct: 1  MAQGTVKWFNATKGFGFIT----TEEGNDVFAHFSAIQTDGFKTLDEGQKVTFDVEEGPR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQAVNIQ 64


>gi|311897073|dbj|BAJ29481.1| putative cold shock protein [Kitasatospora setae KM-6054]
          Length = 67

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S + ++G   L EGQ V +D  Q   
Sbjct: 1  MANGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNINASGFRELLEGQKVEFDVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PQAENIRPL 67


>gi|229825450|ref|ZP_04451519.1| hypothetical protein GCWU000182_00809 [Abiotrophia defectiva ATCC
          49176]
 gi|229790013|gb|EEP26127.1| hypothetical protein GCWU000182_00809 [Abiotrophia defectiva ATCC
          49176]
          Length = 71

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KGYGFIT +     GDDVF+H SA+   G   L EGQ VT++   +  
Sbjct: 1  MNTGVVKWFNSEKGYGFITND---NGGDDVFVHFSAINVEGFKTLNEGQKVTFETETDPK 57

Query: 62 N-GKYSAENLKL 72
          N  K  A N+ +
Sbjct: 58 NSSKLRAVNVSI 69


>gi|86140176|ref|ZP_01058738.1| cold shock family protein [Roseobacter sp. MED193]
 gi|85823113|gb|EAQ43326.1| cold shock family protein [Roseobacter sp. MED193]
          Length = 68

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G      DVF+H SAV  +GL  L + Q VT+D  +   
Sbjct: 1  MASGTVKWFNSTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVTFDI-EPGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL+L
Sbjct: 57 DGRESAVNLEL 67


>gi|288555145|ref|YP_003427080.1| cold shock protein [Bacillus pseudofirmus OF4]
 gi|288546305|gb|ADC50188.1| cold shock protein [Bacillus pseudofirmus OF4]
          Length = 65

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ V+++  Q  A
Sbjct: 1  MTQGTVKWFNAEKGFGFIEVE----GGDDVFVHFSAIQGEGFKSLEEGQAVSFEIEQG-A 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|299537233|ref|ZP_07050536.1| major cold shock protein [Lysinibacillus fusiformis ZC1]
 gi|298727474|gb|EFI68046.1| major cold shock protein [Lysinibacillus fusiformis ZC1]
          Length = 66

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G+DVF+H SA+ S G   L EGQ V +  V+  +
Sbjct: 1  MTQGTVKWFNAEKGFGFIAVE----GGNDVFVHFSAIQSDGFKTLEEGQKVEFG-VEEGS 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQATNVVKL 66


>gi|154252646|ref|YP_001413470.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
          lavamentivorans DS-1]
 gi|154156596|gb|ABS63813.1| putative cold-shock DNA-binding domain protein [Parvibaculum
          lavamentivorans DS-1]
          Length = 67

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI P   ++ G DVF+H SAV  AG+  L EGQ + Y+ V    
Sbjct: 1  MATGVVKWFNTQKGYGFIQP---SDGGRDVFVHISAVERAGMSTLNEGQKINYELVTE-- 55

Query: 62 NGKYSAENLKL 72
           GK SA NL +
Sbjct: 56 KGKTSAANLTV 66


>gi|116619951|ref|YP_822107.1| cold-shock DNA-binding protein family protein [Candidatus
          Solibacter usitatus Ellin6076]
 gi|116223113|gb|ABJ81822.1| cold-shock DNA-binding protein family [Candidatus Solibacter
          usitatus Ellin6076]
          Length = 67

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  KGYGFI        GDDVF+H SA+ + G  +L EG  V ++  Q  
Sbjct: 1  MKEKGTVKWFNAAKGYGFIQ----RSGGDDVFVHFSAIQANGYRSLDEGAEVEFEVKQGP 56

Query: 61 ANGKYSAENLKLV 73
                AEN+ LV
Sbjct: 57 KG--LQAENVALV 67


>gi|188534489|ref|YP_001908286.1| cold shock protein CspE [Erwinia tasmaniensis Et1/99]
 gi|259909137|ref|YP_002649493.1| cold shock protein CspE [Erwinia pyrifoliae Ep1/96]
 gi|292487595|ref|YP_003530467.1| cold shock-like protein CspE [Erwinia amylovora CFBP1430]
 gi|292898834|ref|YP_003538203.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
 gi|300715812|ref|YP_003740615.1| Cold shock protein [Erwinia billingiae Eb661]
 gi|188029531|emb|CAO97408.1| Putative cold shock-like protein [Erwinia tasmaniensis Et1/99]
 gi|224964759|emb|CAX56276.1| similar to cold shock protein CspE [Erwinia pyrifoliae Ep1/96]
 gi|291198682|emb|CBJ45791.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
 gi|291553014|emb|CBA20059.1| Cold shock-like protein cspE (CSP-E) [Erwinia amylovora CFBP1430]
 gi|299061648|emb|CAX58764.1| Cold shock protein [Erwinia billingiae Eb661]
 gi|310766962|gb|ADP11912.1| Cold shock-like protein cspE (CSP-E) [Erwinia sp. Ejp617]
 gi|312171701|emb|CBX79959.1| Cold shock-like protein cspE (CSP-E) [Erwinia amylovora ATCC
          BAA-2158]
          Length = 69

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   N A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 60

Query: 64 KYSAEN 69
            +A  
Sbjct: 61 PSAANV 66


>gi|152969470|ref|YP_001334579.1| DNA replication inhibitor [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
 gi|206580364|ref|YP_002239468.1| cold shock domain protein CspD [Klebsiella pneumoniae 342]
 gi|238893942|ref|YP_002918676.1| cold shock-like protein [Klebsiella pneumoniae NTUH-K2044]
 gi|262041018|ref|ZP_06014238.1| cold-shock protein CspD [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288936316|ref|YP_003440375.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|290510628|ref|ZP_06549998.1| cold shock domain-containing protein CspD [Klebsiella sp. 1_1_55]
 gi|329998509|ref|ZP_08303131.1| cold shock domain protein CspD [Klebsiella sp. MS 92-3]
 gi|150954319|gb|ABR76349.1| DNA replication inhibitor, nucleic acid-binding domain
          [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206569422|gb|ACI11198.1| cold shock domain protein CspD [Klebsiella pneumoniae 342]
 gi|238546258|dbj|BAH62609.1| cold shock-like protein [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
 gi|259041634|gb|EEW42685.1| cold-shock protein CspD [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288891025|gb|ADC59343.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|289777344|gb|EFD85342.1| cold shock domain-containing protein CspD [Klebsiella sp. 1_1_55]
 gi|328538654|gb|EGF64751.1| cold shock domain protein CspD [Klebsiella sp. MS 92-3]
          Length = 73

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQAVRFDVHQG-P 56

Query: 62 NGKYSAENLKLVPKSS 77
           G +++  + +  +++
Sbjct: 57 KGNHASVIVPVEAETA 72


>gi|50121583|ref|YP_050750.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043]
 gi|49612109|emb|CAG75559.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043]
          Length = 73

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    GDD+F H S +   G   L  GQ+V +D  +   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHEGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|254380603|ref|ZP_04995969.1| cold shock protein scoF [Streptomyces sp. Mg1]
 gi|194339514|gb|EDX20480.1| cold shock protein scoF [Streptomyces sp. Mg1]
          Length = 67

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H SA+ S+G   L EGQ+VT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSSGFRELQEGQIVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|89093060|ref|ZP_01166011.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp.
          MED92]
 gi|89082710|gb|EAR61931.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp.
          MED92]
          Length = 67

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N +KG+GFI  E    +G DVF+H SA+   G   L EGQ V +   Q  
Sbjct: 1  MSTTGTVKWFNEEKGFGFIEQE----NGPDVFVHFSAIQGDGFKTLAEGQKVEFSVTQGQ 56

Query: 61 ANGKYSAENLK 71
                AEN+ 
Sbjct: 57 KG--PQAENVT 65


>gi|330811400|ref|YP_004355862.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379508|gb|AEA70858.1| Putative transcription factor, Csd family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 201

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 134 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 188

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 189 LQAEDVIAALPR 200


>gi|323137446|ref|ZP_08072524.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
 gi|322397433|gb|EFX99956.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
          Length = 69

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AG+ +L+EGQ ++YD + +  
Sbjct: 1  MFYGTVKWFNSQKGFGFIQPD---DGGKDVFVHISAVEQAGMRDLSEGQKLSYDIIDDRR 57

Query: 62 NGKYSAENLK 71
          +GK SA  L+
Sbjct: 58 SGKASAGKLQ 67


>gi|317122838|ref|YP_004102841.1| cold-shock DNA-binding protein family [Thermaerobacter
          marianensis DSM 12885]
 gi|315592818|gb|ADU52114.1| cold-shock DNA-binding protein family [Thermaerobacter
          marianensis DSM 12885]
          Length = 66

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KGYGFIT +   +   DVF+H SA+   G   L EGQ VT+D V+ +   
Sbjct: 2  TGTVKWFNAEKGYGFITRD---DGQGDVFVHFSAIVGTGYRTLEEGQKVTFDVVEGEKGP 58

Query: 64 KYSAENLKLV 73
          K  A+N+ ++
Sbjct: 59 K--AQNVVVL 66


>gi|304407680|ref|ZP_07389331.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304343163|gb|EFM09006.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 65

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     TE G DVF+H SA+ + G   L EGQ V +D V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFIE----TEQGGDVFVHFSAIQADGFKTLEEGQAVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 57 PQAANVTKL 65


>gi|294787952|ref|ZP_06753196.1| putative cold-shock protein [Simonsiella muelleri ATCC 29453]
 gi|294484245|gb|EFG31928.1| putative cold-shock protein [Simonsiella muelleri ATCC 29453]
          Length = 67

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++      
Sbjct: 1  MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFEVTTGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|302381609|ref|YP_003817432.1| cold-shock DNA-binding domain protein [Brevundimonas
          subvibrioides ATCC 15264]
 gi|302192237|gb|ADK99808.1| cold-shock DNA-binding domain protein [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 70

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KWYN  KGYGFI P   ++ G DVF+H SAV  AG+  L EGQ V+Y+  ++  
Sbjct: 1  MATGTVKWYNSTKGYGFIEP---SDGGKDVFVHVSAVEGAGMNGLNEGQKVSYEVEKDRR 57

Query: 62 NGKYSAENLK 71
           GK SA  LK
Sbjct: 58 TGKESAGQLK 67


>gi|222152818|ref|YP_002561995.1| cold shock protein [Streptococcus uberis 0140J]
 gi|222113631|emb|CAR41517.1| cold shock protein [Streptococcus uberis 0140J]
          Length = 67

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ E    +GDDVF H SA+ S G  +L EGQ V +D  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFISQE----NGDDVFAHFSAIQSDGFKSLDEGQKVEFDIEQGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  V
Sbjct: 57 G--LQATNITKV 66


>gi|16119742|ref|NP_396448.1| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|15162334|gb|AAK90889.1| cold shock protein [Agrobacterium tumefaciens str. C58]
          Length = 74

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KG+GFI P+     G D F+H SAV  AG+  L EGQ + +D  ++ 
Sbjct: 5  IMTTGTVKWFNSTKGFGFIQPD---NGGVDAFVHISAVERAGMRELVEGQKIGFDLERDM 61

Query: 61 ANGKYSAENLK 71
           +GK SA NL+
Sbjct: 62 KSGKMSACNLQ 72


>gi|330875784|gb|EGH09933.1| cold shock domain family protein [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 92

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G  +  +D+F H SA+   G   L  GQ V++D +Q   
Sbjct: 1  MLYGKVKWFNNAKGYGFILEDGKPD--EDLFAHFSAIQMDGYKTLKAGQPVSFDIIQGPK 58

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 59 G--LHAVNIQ 66


>gi|126699928|ref|YP_001088825.1| cold shock protein [Clostridium difficile 630]
 gi|254975893|ref|ZP_05272365.1| cold shock protein [Clostridium difficile QCD-66c26]
 gi|255093279|ref|ZP_05322757.1| cold shock protein [Clostridium difficile CIP 107932]
 gi|255101459|ref|ZP_05330436.1| cold shock protein [Clostridium difficile QCD-63q42]
 gi|255307332|ref|ZP_05351503.1| cold shock protein [Clostridium difficile ATCC 43255]
 gi|255315026|ref|ZP_05356609.1| cold shock protein [Clostridium difficile QCD-76w55]
 gi|255517696|ref|ZP_05385372.1| cold shock protein [Clostridium difficile QCD-97b34]
 gi|255650808|ref|ZP_05397710.1| cold shock protein [Clostridium difficile QCD-37x79]
 gi|255656285|ref|ZP_05401694.1| cold shock protein [Clostridium difficile QCD-23m63]
 gi|260683889|ref|YP_003215174.1| cold shock protein [Clostridium difficile CD196]
 gi|260687549|ref|YP_003218683.1| cold shock protein [Clostridium difficile R20291]
 gi|296450274|ref|ZP_06892035.1| cold shock protein CspA [Clostridium difficile NAP08]
 gi|296878689|ref|ZP_06902694.1| cold shock protein CspA [Clostridium difficile NAP07]
 gi|306520707|ref|ZP_07407054.1| cold shock protein [Clostridium difficile QCD-32g58]
 gi|115251365|emb|CAJ69197.1| Cold shock protein D [Clostridium difficile]
 gi|260210052|emb|CBA64132.1| cold shock protein [Clostridium difficile CD196]
 gi|260213566|emb|CBE05331.1| cold shock protein [Clostridium difficile R20291]
 gi|296261037|gb|EFH07871.1| cold shock protein CspA [Clostridium difficile NAP08]
 gi|296430496|gb|EFH16338.1| cold shock protein CspA [Clostridium difficile NAP07]
          Length = 66

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFI+     ESGDDVF H SA+ ++G  +L EGQ V++D V+   
Sbjct: 1  MNNGIVKWFNNEKGFGFIS----MESGDDVFAHFSAIQTSGFKSLEEGQKVSFDIVKGAR 56

Query: 62 NGKYSAENLKLV 73
               AEN+ ++
Sbjct: 57 G--PQAENITIL 66


>gi|256391325|ref|YP_003112889.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256357551|gb|ACU71048.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 69

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI  +G    G DVF+H SA+  +G  NL E Q V ++  Q   
Sbjct: 1  MATGTVKWFNGEKGYGFIAQDG---GGPDVFVHFSAIEGSGYRNLEENQPVEFEITQGPK 57

Query: 62 NGKYSAENLKLVPK 75
               AE ++ + +
Sbjct: 58 G--PQAEKVRALAQ 69


>gi|296100584|ref|YP_003610730.1| major cold shock protein [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|295055043|gb|ADF59781.1| major cold shock protein [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|295095151|emb|CBK84241.1| cold-shock DNA-binding protein family [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 70

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H SA+ + G  +L EGQ V++   ++ A G
Sbjct: 6  TGLVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PAAGNVVSL 70


>gi|258650835|ref|YP_003199991.1| cold-shock DNA-binding domain-containing protein [Nakamurella
          multipartita DSM 44233]
 gi|258554060|gb|ACV77002.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
          DSM 44233]
          Length = 67

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFITP    E G DVF+H S + + G  +L E Q VTY   Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFITP---NEGGPDVFVHYSEIQAGGYRSLEENQQVTYTVTQGT- 56

Query: 62 NGKYSAENLKL 72
           G  + +   L
Sbjct: 57 KGPQATQVTPL 67


>gi|126653234|ref|ZP_01725352.1| cold shock protein [Bacillus sp. B14905]
 gi|126589985|gb|EAZ84113.1| cold shock protein [Bacillus sp. B14905]
          Length = 66

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI      + G+DVF+H + +   G   L EGQ V++D V+ + 
Sbjct: 1  MQHGIVKWFNNEKGYGFIE----CDDGEDVFVHFTGIQEEGFRTLEEGQKVSFDVVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  ++  +KL
Sbjct: 56 RGPQASNVVKL 66


>gi|119897425|ref|YP_932638.1| cold-shock protein [Azoarcus sp. BH72]
 gi|119669838|emb|CAL93751.1| cold-shock protein [Azoarcus sp. BH72]
          Length = 67

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  +D+F H SA+   G   L EG+ V+++  Q   
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMNGFKTLKEGEKVSFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|111226121|ref|YP_716915.1| major cold shock protein, ssDNA-binding property [Frankia alni
          ACN14a]
 gi|111153653|emb|CAJ65413.1| major cold shock protein, ssDNA-binding property [Frankia alni
          ACN14a]
          Length = 67

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ +G    G DVF+H S++ + G  +L EGQ V ++ VQ   
Sbjct: 1  MAQGTVKWFNAEKGFGFISVDG---GGPDVFVHYSSIVADGYKSLDEGQSVQFEIVQGQK 57

Query: 62 NGKYSAENLK 71
               A+N+ 
Sbjct: 58 G--PQADNVT 65


>gi|295688372|ref|YP_003592065.1| cold-shock DNA-binding domain-containing protein [Caulobacter
          segnis ATCC 21756]
 gi|295430275|gb|ADG09447.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC
          21756]
          Length = 69

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G D+F+H SAV  AGL  L EGQ ++++   +  
Sbjct: 1  MATGTVKWFNSAKGFGFIQPD---NGGQDIFVHISAVERAGLNGLNEGQKLSFEPEVDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK SA  L+ V
Sbjct: 58 SGKTSAGQLQAV 69


>gi|271970090|ref|YP_003344286.1| cold-shock DNA-binding domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270513265|gb|ACZ91543.1| putative cold-shock DNA-binding domain protein [Streptosporangium
          roseum DSM 43021]
          Length = 66

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKGYGFI  +     G DVF+H SA+   G   L +GQ V ++  Q   
Sbjct: 1  MAQGTVKWFNADKGYGFIAVD----GGKDVFVHYSAIMMDGYRALEQGQRVEFEITQGQK 56

Query: 62 NGKYSAENLKLV 73
               AE+++ V
Sbjct: 57 G--PQAESVRAV 66


>gi|209521754|ref|ZP_03270439.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|209497821|gb|EDZ97991.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
          Length = 67

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H S + ++G  +L E Q V+++  Q   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIQASGFKSLQENQKVSFEVKQG-P 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|327440557|dbj|BAK16922.1| cold shock protein [Solibacillus silvestris StLB046]
          Length = 66

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G+DVF H SA+   G  +L EGQ V ++  ++  
Sbjct: 1  MTQGTVKWFNAEKGFGFIEVE----GGNDVFAHFSAIQGEGFKSLDEGQKVEFEI-EDGQ 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQATNIVKL 66


>gi|218548403|ref|YP_002382194.1| cold shock protein-like protein [Escherichia fergusonii ATCC
          35469]
 gi|218355944|emb|CAQ88559.1| cold shock protein homolog [Escherichia fergusonii ATCC 35469]
 gi|324113824|gb|EGC07799.1| cold shock domain-containing protein CspD [Escherichia fergusonii
          B253]
 gi|325496824|gb|EGC94683.1| cold shock protein [Escherichia fergusonii ECD227]
          Length = 73

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQPVQFDVTQG-P 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G +++    +VP  + 
Sbjct: 57 KGNHASV---IVPYEAE 70


>gi|156936422|ref|YP_001440338.1| major cold shock protein [Cronobacter sakazakii ATCC BAA-894]
 gi|156534676|gb|ABU79502.1| hypothetical protein ESA_04323 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 70

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFITP+       DVF+H SA+ + G   L EGQ V++  V++ A G
Sbjct: 6  TGLVKWFNAEKGFGFITPD---NGSKDVFVHFSAIQNNGFKTLEEGQKVSFS-VESGAKG 61

Query: 64 KYSAENLKL 72
            +A    +
Sbjct: 62 PAAANVTAI 70


>gi|149180594|ref|ZP_01859098.1| cold-shock domain family protein [Bacillus sp. SG-1]
 gi|148851747|gb|EDL65893.1| cold-shock domain family protein [Bacillus sp. SG-1]
          Length = 66

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ VT+D  Q   
Sbjct: 1  MEKGTVKWFNAEKGFGFIEVE----GGEDVFVHFSAIQGEGFKSLDEGQAVTFDIEQGQ- 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGPQAANV 63


>gi|153005392|ref|YP_001379717.1| cold-shock DNA-binding domain-containing protein
          [Anaeromyxobacter sp. Fw109-5]
 gi|152028965|gb|ABS26733.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
          sp. Fw109-5]
          Length = 65

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+ E     G+DVF+H +A+   G   L EG+ V +D  Q   
Sbjct: 1  MATGTVKWFNDAKGFGFISQE----GGEDVFVHHTAIQMDGFRTLKEGERVEFDVTQG-P 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 KGLQAANV 63


>gi|328951487|ref|YP_004368822.1| cold-shock DNA-binding domain protein [Marinithermus
          hydrothermalis DSM 14884]
 gi|328451811|gb|AEB12712.1| cold-shock DNA-binding domain protein [Marinithermus
          hydrothermalis DSM 14884]
          Length = 72

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 6/77 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  E    SG DVF+H SA+   G   L EG +VT++  Q   
Sbjct: 1  MEKGRVKWFNAEKGYGFIERE----SGGDVFVHFSAINGTGFRTLNEGDVVTFEIKQAAK 56

Query: 62 NGKYSAENLKLVPKSSN 78
              +A+N+ +V  +S 
Sbjct: 57 G--PAADNVTVVEPASQ 71


>gi|283784647|ref|YP_003364512.1| cold shock-like protein CspD [Citrobacter rodentium ICC168]
 gi|282948101|emb|CBG87666.1| cold shock-like protein CspD [Citrobacter rodentium ICC168]
          Length = 73

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQPVQFDVHQG-P 56

Query: 62 NGKYSAENLKLVPKS 76
           G +++  + +  ++
Sbjct: 57 KGNHASVIVPIEAEA 71


>gi|314935260|ref|ZP_07842613.1| conserved domain protein [Staphylococcus hominis subsp. hominis
          C80]
 gi|313656595|gb|EFS20334.1| conserved domain protein [Staphylococcus hominis subsp. hominis
          C80]
          Length = 75

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E     GDDVF+H S +A+ G   L EGQ V +D  +   
Sbjct: 10 MNNGTVKWFNAEKGFGFIERE----DGDDVFVHFSGIATDGYKTLEEGQKVEFDITEGQR 65

Query: 62 NGKYSAENLKLV 73
               A N+  V
Sbjct: 66 G--EQATNVVPV 75


>gi|311280210|ref|YP_003942441.1| cold-shock DNA-binding domain-containing protein [Enterobacter
          cloacae SCF1]
 gi|308749405|gb|ADO49157.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1]
          Length = 73

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQPVRFDVHQG-P 56

Query: 62 NGKYSAENLKLVPKSS 77
           G +++  + +  +++
Sbjct: 57 KGNHASVIIPVEAETA 72


>gi|28896678|ref|NP_803028.1| cold shock protein [Streptococcus pyogenes SSI-1]
 gi|71904413|ref|YP_281216.1| cold shock protein [Streptococcus pyogenes MGAS6180]
 gi|71911578|ref|YP_283128.1| cold shock protein [Streptococcus pyogenes MGAS5005]
 gi|94989406|ref|YP_597507.1| cold shock protein [Streptococcus pyogenes MGAS9429]
 gi|94993297|ref|YP_601396.1| cold shock protein [Streptococcus pyogenes MGAS2096]
 gi|94995255|ref|YP_603353.1| Cold shock protein [Streptococcus pyogenes MGAS10750]
 gi|209560193|ref|YP_002286665.1| Major cold-shock protein [Streptococcus pyogenes NZ131]
 gi|306826514|ref|ZP_07459824.1| cold shock protein CspA [Streptococcus pyogenes ATCC 10782]
 gi|28811932|dbj|BAC64861.1| putative cold shock protein [Streptococcus pyogenes SSI-1]
 gi|71803508|gb|AAX72861.1| cold shock protein [Streptococcus pyogenes MGAS6180]
 gi|71854360|gb|AAZ52383.1| cold shock protein [Streptococcus pyogenes MGAS5005]
 gi|94542914|gb|ABF32963.1| cold shock protein [Streptococcus pyogenes MGAS9429]
 gi|94546805|gb|ABF36852.1| Cold shock protein [Streptococcus pyogenes MGAS2096]
 gi|94548763|gb|ABF38809.1| Cold shock protein [Streptococcus pyogenes MGAS10750]
 gi|209541394|gb|ACI61970.1| Major cold-shock protein [Streptococcus pyogenes NZ131]
 gi|304431301|gb|EFM34300.1| cold shock protein CspA [Streptococcus pyogenes ATCC 10782]
          Length = 69

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+    TE+G DVF H SA+ + G   L EGQ V +D  +   
Sbjct: 3  MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 58

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 59 G--PQAVNITKL 68


>gi|312138659|ref|YP_004005995.1| cold shock protein [Rhodococcus equi 103S]
 gi|325676272|ref|ZP_08155951.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
 gi|311887998|emb|CBH47310.1| cold shock protein [Rhodococcus equi 103S]
 gi|325552833|gb|EGD22516.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
          Length = 67

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+   +   DVF+H SA+ + G   L E Q V ++  Q + 
Sbjct: 1  MAEGTVKWFNAEKGFGFIAPD---DGSADVFVHYSAIQTNGFRTLEENQRVRFEIGQGNK 57

Query: 62 NGKYSAENLKLV 73
               A ++  V
Sbjct: 58 G--PQATDVTAV 67


>gi|251794220|ref|YP_003008951.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
 gi|247541846|gb|ACS98864.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
          Length = 66

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ V ++ VQ + 
Sbjct: 1  MQQGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIVGEGFKTLEEGQRVEFNVVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQAENVVKL 66


>gi|170696311|ref|ZP_02887442.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
 gi|170138792|gb|EDT06989.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
          Length = 67

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H S + S G  +L E Q V+++  Q   
Sbjct: 1  MPTGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRSEGFKSLQENQKVSFEVKQG-P 56

Query: 62 NGKYSAE 68
           GK +A+
Sbjct: 57 KGKQAAD 63


>gi|163744653|ref|ZP_02152013.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
 gi|161381471|gb|EDQ05880.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45]
          Length = 68

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G      DVF+H SAV  AGL  L + Q VT+D  +   
Sbjct: 1  MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLADNQKVTFDI-EAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N+ L
Sbjct: 57 DGRESATNIAL 67


>gi|16079252|ref|NP_390076.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310107|ref|ZP_03591954.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314429|ref|ZP_03596234.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. NCIB
          3610]
 gi|221319351|ref|ZP_03600645.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323627|ref|ZP_03604921.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321311659|ref|YP_004203946.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus subtilis BSn5]
 gi|1706171|sp|P51777|CSPD_BACSU RecName: Full=Cold shock protein CspD
 gi|1256629|gb|AAA96623.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634613|emb|CAB14111.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484613|dbj|BAI85688.1| cold-shock protein [Bacillus subtilis subsp. natto BEST195]
 gi|320017933|gb|ADV92919.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus subtilis BSn5]
          Length = 66

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     GDDVF+H +A+   G  +L EGQ V+++ V+ + 
Sbjct: 1  MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIEGDGYKSLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  ++  +KL
Sbjct: 56 RGPQASNVVKL 66


>gi|125974357|ref|YP_001038267.1| cold-shock DNA-binding protein family protein [Clostridium
          thermocellum ATCC 27405]
 gi|256005564|ref|ZP_05430524.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
          DSM 2360]
 gi|281418904|ref|ZP_06249922.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
          JW20]
 gi|125714582|gb|ABN53074.1| cold-shock DNA-binding protein family [Clostridium thermocellum
          ATCC 27405]
 gi|255990472|gb|EEU00594.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
          DSM 2360]
 gi|281407361|gb|EFB37621.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
          JW20]
 gi|316941515|gb|ADU75549.1| cold-shock DNA-binding domain protein [Clostridium thermocellum
          DSM 1313]
          Length = 66

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KG+GFI  E     G DVF+H SA+   G   L EG  V ++ V+  A
Sbjct: 1  MERGRVKWFNAEKGFGFIERE----GGKDVFVHFSAINMDGYKTLEEGAEVEFEVVEG-A 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 KGPQAANVTK 65


>gi|304403836|ref|ZP_07385498.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304346814|gb|EFM12646.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 65

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI  E    +G+DVF+H SA+   G   L EGQ V +D   +   G
Sbjct: 2  KGTVKWFNAEKGYGFIQVE----NGEDVFVHFSAITGEGFKTLEEGQAVEFDIT-DGNRG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|16759816|ref|NP_455433.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|16764305|ref|NP_459920.1| stress response protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|29142411|ref|NP_805753.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|56414004|ref|YP_151079.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62179468|ref|YP_215885.1| CspA-like protein [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|157146440|ref|YP_001453759.1| hypothetical protein CKO_02200 [Citrobacter koseri ATCC BAA-895]
 gi|161503927|ref|YP_001571039.1| hypothetical protein SARI_02018 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161614826|ref|YP_001588791.1| hypothetical protein SPAB_02579 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|167550382|ref|ZP_02344139.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|168230817|ref|ZP_02655875.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|168236854|ref|ZP_02661912.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|168240791|ref|ZP_02665723.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|168263571|ref|ZP_02685544.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|168466527|ref|ZP_02700389.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|168819926|ref|ZP_02831926.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|194446783|ref|YP_002040144.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194451466|ref|YP_002044937.1| cold shock domain-containing protein CspD [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL476]
 gi|194470525|ref|ZP_03076509.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194734305|ref|YP_002114000.1| cold shock domain-containing protein CspD [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197248616|ref|YP_002145861.1| cold shock domain-containing protein CspD [Salmonella enterica
          subsp. enterica serovar Agona str. SL483]
 gi|197264137|ref|ZP_03164211.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197362927|ref|YP_002142564.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|198245012|ref|YP_002214871.1| cold shock domain-containing protein CspD [Salmonella enterica
          subsp. enterica serovar Dublin str. CT_02021853]
 gi|200391092|ref|ZP_03217703.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204930059|ref|ZP_03221080.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205352154|ref|YP_002225955.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|207856338|ref|YP_002242989.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|213053362|ref|ZP_03346240.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
 gi|213419933|ref|ZP_03352999.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
 gi|213428023|ref|ZP_03360773.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. E02-1180]
 gi|213581371|ref|ZP_03363197.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
 gi|213620716|ref|ZP_03373499.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
 gi|213649853|ref|ZP_03379906.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
 gi|213865355|ref|ZP_03387474.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
 gi|224582755|ref|YP_002636553.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|238913423|ref|ZP_04657260.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Tennessee str. CDC07-0191]
 gi|289805674|ref|ZP_06536303.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
 gi|289825001|ref|ZP_06544364.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-3139]
 gi|25296125|pir||AG0609 cold shock-like protein CspD [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|16419455|gb|AAL19879.1| CspA-like protein but not cold shock induced [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|16502109|emb|CAD05345.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29138041|gb|AAO69602.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|56128261|gb|AAV77767.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62127101|gb|AAX64804.1| CspA-like protein [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|157083645|gb|ABV13323.1| hypothetical protein CKO_02200 [Citrobacter koseri ATCC BAA-895]
 gi|160865274|gb|ABX21897.1| hypothetical protein SARI_02018 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|161364190|gb|ABX67958.1| hypothetical protein SPAB_02579 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194405446|gb|ACF65668.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194409770|gb|ACF69989.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194456889|gb|EDX45728.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194709807|gb|ACF89028.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|195630992|gb|EDX49578.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|197094404|emb|CAR59920.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|197212319|gb|ACH49716.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197242392|gb|EDY25012.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197290126|gb|EDY29483.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|197939528|gb|ACH76861.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|199603537|gb|EDZ02083.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204321053|gb|EDZ06254.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205271935|emb|CAR36779.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205324550|gb|EDZ12389.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205334822|gb|EDZ21586.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|205339865|gb|EDZ26629.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|205343272|gb|EDZ30036.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205347672|gb|EDZ34303.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|206708141|emb|CAR32434.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|224467282|gb|ACN45112.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|261246160|emb|CBG23964.1| cold shock-like protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267992672|gb|ACY87557.1| stress response protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|301157488|emb|CBW16978.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|312911933|dbj|BAJ35907.1| cold shock protein CspD [Salmonella enterica subsp. enterica
          serovar Typhimurium str. T000240]
 gi|320085180|emb|CBY94967.1| Cold shock-like protein cspD [Salmonella enterica subsp. enterica
          serovar Weltevreden str. 2007-60-3289-1]
 gi|321223268|gb|EFX48337.1| Cold shock protein CspD [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322616380|gb|EFY13289.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322619630|gb|EFY16505.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322622674|gb|EFY19519.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322628587|gb|EFY25374.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322631523|gb|EFY28279.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322637050|gb|EFY33753.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322641752|gb|EFY38388.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322644456|gb|EFY40996.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649574|gb|EFY46005.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322654124|gb|EFY50447.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658039|gb|EFY54306.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322663513|gb|EFY59715.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322670249|gb|EFY66389.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671485|gb|EFY67607.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322676841|gb|EFY72908.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322682766|gb|EFY78785.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322686445|gb|EFY82427.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|322713938|gb|EFZ05509.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
 gi|323129210|gb|ADX16640.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
 gi|323196101|gb|EFZ81264.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323196753|gb|EFZ81897.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323202967|gb|EFZ88001.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323209008|gb|EFZ93945.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323211913|gb|EFZ96741.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323215155|gb|EFZ99900.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323222358|gb|EGA06736.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323226879|gb|EGA11062.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323229833|gb|EGA13956.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323233058|gb|EGA17154.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323240793|gb|EGA24835.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323243110|gb|EGA27130.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323247431|gb|EGA31387.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2009159199]
 gi|323251653|gb|EGA35520.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008282]
 gi|323257359|gb|EGA41057.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008283]
 gi|323261948|gb|EGA45514.1| cold shock domain protein CspD [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323267963|gb|EGA51442.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008285]
 gi|323271970|gb|EGA55385.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008287]
 gi|326622624|gb|EGE28969.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Dublin str. 3246]
 gi|326627198|gb|EGE33541.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
 gi|332987837|gb|AEF06820.1| stress response protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
          Length = 73

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQG-P 56

Query: 62 NGKYSAENLKLVPKS 76
           G +++  + +  ++
Sbjct: 57 KGNHASVIVPIEAEA 71


>gi|322381500|ref|ZP_08055480.1| cold-shock protein molecular chaperone RNA-helicase
          co-factor-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|322382685|ref|ZP_08056543.1| cold-shock protein molecular chaperone-like
          protein/RNA-helicase-like protein co-factor
          [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153346|gb|EFX45776.1| cold-shock protein molecular chaperone-like
          protein/RNA-helicase-like protein co-factor
          [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154542|gb|EFX46838.1| cold-shock protein molecular chaperone RNA-helicase
          co-factor-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 68

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI      E G+DVF+H S++   G  +L EGQ V ++  Q + 
Sbjct: 1  MQTGTVKWFNAEKGFGFIE----IEQGNDVFVHFSSIEGDGYKSLDEGQRVQFNVTQGNR 56

Query: 62 NGKYSAENLKLV 73
               AEN+  V
Sbjct: 57 G--PQAENVSKV 66


>gi|238927666|ref|ZP_04659426.1| major cold shock protein [Selenomonas flueggei ATCC 43531]
 gi|238884382|gb|EEQ48020.1| major cold shock protein [Selenomonas flueggei ATCC 43531]
          Length = 88

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++ DKGYGFI+ E     GDDVF+H S++   G   L+EGQ V +D V+  A G
Sbjct: 24 TGKVKWFSADKGYGFISRE----DGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVEG-ARG 78

Query: 64 KYSAENLK 71
            +   +K
Sbjct: 79 PQADNVVK 86


>gi|261404186|ref|YP_003240427.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|261280649|gb|ACX62620.1| cold-shock DNA-binding domain protein [Paenibacillus sp.
          Y412MC10]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     G+DVF+H SA+A  G  +L EGQ V ++ VQ + 
Sbjct: 1  MQTGTVKWFNAEKGFGFIEVE----GGEDVFVHFSAIAGDGFKSLDEGQRVEFNVVQGNR 56

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 57 G--QQAENV 63


>gi|23099198|ref|NP_692664.1| cold shock protein [Oceanobacillus iheyensis HTE831]
 gi|22777426|dbj|BAC13699.1| cold shock protein [Oceanobacillus iheyensis HTE831]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI      E G+DVF+H SA+   G  +L EGQ V+++ V+ + 
Sbjct: 1  MENGVVKWFNAEKGYGFIQ----LEEGNDVFVHYSAIQEEGFKSLEEGQEVSFEIVEGE- 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGPQAANVVK 65


>gi|298292870|ref|YP_003694809.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296929381|gb|ADH90190.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 69

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G DVF+H SAV  AGL  L EGQ ++Y+   +  
Sbjct: 1  MAAGTVKWFNGQKGFGFIQPD---NGGPDVFVHISAVERAGLVGLNEGQKISYEVETDRR 57

Query: 62 NGKYSAENLKLV 73
          +GK SA +L+ V
Sbjct: 58 SGKSSAGSLQAV 69


>gi|294678657|ref|YP_003579272.1| cold shock-like protein CspD [Rhodobacter capsulatus SB 1003]
 gi|294477477|gb|ADE86865.1| cold shock-like protein CspD [Rhodobacter capsulatus SB 1003]
          Length = 68

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI PE     G DVF+H SAV  AGL  L +GQ + YD  +   
Sbjct: 1  MAKGTVKWFNQTKGFGFIAPES---GGKDVFVHISAVERAGLRGLNDGQAINYDL-EKGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL +
Sbjct: 57 DGRESAINLAI 67


>gi|293396849|ref|ZP_06641123.1| cold shock domain protein CspD [Serratia odorifera DSM 4582]
 gi|291420320|gb|EFE93575.1| cold shock domain protein CspD [Serratia odorifera DSM 4582]
          Length = 73

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVRFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|169828200|ref|YP_001698358.1| major cold shock protein [Lysinibacillus sphaericus C3-41]
 gi|168992688|gb|ACA40228.1| Major cold shock protein [Lysinibacillus sphaericus C3-41]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G+DVF+H SA+ + G   L EGQ V +   + + 
Sbjct: 1  MTQGTVKWFNAEKGFGFIAVE----GGNDVFVHFSAIQTDGFKTLEEGQKVEFGVEEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQATNVVKL 66


>gi|91777186|ref|YP_552394.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|91689846|gb|ABE33044.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
          Length = 77

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H S V  +G  +L E Q VT++  Q   
Sbjct: 11 MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEVQGSGFKSLQENQKVTFEVKQG-P 66

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 67 KGKQAAN 73


>gi|329116681|ref|ZP_08245398.1| major cold shock protein CspA [Streptococcus parauberis NCFD
          2020]
 gi|326907086|gb|EGE54000.1| major cold shock protein CspA [Streptococcus parauberis NCFD
          2020]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+    TE+G DVF H SA+ S G  +L EGQ V +D V+   
Sbjct: 1  MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQSNGFKSLDEGQKVEFD-VEEGQ 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQAVNIVKL 66


>gi|331694459|ref|YP_004330698.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326949148|gb|AEA22845.1| cold-shock DNA-binding domain protein [Pseudonocardia
          dioxanivorans CB1190]
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +   ++G DVF+H SA+ + G   L E Q V ++  Q   
Sbjct: 1  MPQGTVKWFNAEKGFGFIATD---DNGPDVFVHYSAIQTDGFRTLEENQRVDFEASQGAK 57

Query: 62 NGKYSAENLKLV 73
               A++++ +
Sbjct: 58 G--PQADSVRPI 67


>gi|295700731|ref|YP_003608624.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|295439944|gb|ADG19113.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H S + ++G  +L E Q V+++  Q   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIQASGFKSLQENQKVSFEVKQG-P 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|159044762|ref|YP_001533556.1| putative cold-shock DNA-binding domain-containing protein
          [Dinoroseobacter shibae DFL 12]
 gi|157912522|gb|ABV93955.1| putative cold-shock DNA-binding domain protein [Dinoroseobacter
          shibae DFL 12]
          Length = 68

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+G      DVF+H SAV  AGL  L + Q VT+D  +   
Sbjct: 1  MATGTVKWFNETKGYGFIAPDG---GSRDVFVHISAVERAGLTGLKDNQKVTFDI-EAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N+ L
Sbjct: 57 DGRESATNIVL 67


>gi|300933731|ref|ZP_07148987.1| putative cold shock protein [Corynebacterium resistens DSM 45100]
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H S +   G   L E Q V ++  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQKVEFEIGEGAK 57

Query: 62 NGKYSAENLKLV 73
               A+N+  +
Sbjct: 58 G--PQAQNVTAL 67


>gi|229118682|ref|ZP_04248034.1| hypothetical protein bcere0017_49470 [Bacillus cereus Rock1-3]
 gi|228664874|gb|EEL20364.1| hypothetical protein bcere0017_49470 [Bacillus cereus Rock1-3]
          Length = 65

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ V +D V + A G
Sbjct: 2  QGKVKWFNAEKGFGFIERE----DGEDVFVHFSAIQQDGYKSLEEGQQVKFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|15672150|ref|NP_266324.1| cold shock protein E [Lactococcus lactis subsp. lactis Il1403]
 gi|281490655|ref|YP_003352635.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|12723019|gb|AAK04266.1|AE006254_7 cold shock protein E [Lactococcus lactis subsp. lactis Il1403]
 gi|281374424|gb|ADA63945.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|326405743|gb|ADZ62814.1| cold shock protein [Lactococcus lactis subsp. lactis CV56]
          Length = 65

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFIT    TE G+DVF H SA+ + G   L EGQ VT+D V++  
Sbjct: 1  MAQGTVKWFNATKGFGFIT----TEEGNDVFAHFSAIQTDGFKTLDEGQKVTFD-VEDGP 55

Query: 62 NGKYSAENLK 71
           G   A N++
Sbjct: 56 RGPQ-AVNIQ 64


>gi|317124225|ref|YP_004098337.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
 gi|315588313|gb|ADU47610.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P      G DVF+H S + + G  +L E Q V +D  Q   
Sbjct: 1  MAQGTVKWFNSEKGFGFIAP----TEGPDVFVHYSEIQTNGYRSLEENQAVEFDVEQGPK 56

Query: 62 NGKYSAENLKLV 73
               A  ++LV
Sbjct: 57 G--PQAMRVRLV 66


>gi|156933606|ref|YP_001437522.1| hypothetical protein ESA_01428 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156531860|gb|ABU76686.1| hypothetical protein ESA_01428 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 90

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 26 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 81

Query: 64 KYSAENLKL 72
            +   + +
Sbjct: 82 PAAVNVVAI 90


>gi|121535516|ref|ZP_01667325.1| cold-shock DNA-binding domain protein [Thermosinus
          carboxydivorans Nor1]
 gi|121305935|gb|EAX46868.1| cold-shock DNA-binding domain protein [Thermosinus
          carboxydivorans Nor1]
          Length = 68

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI  E     G DVF+H SA+   G  +LTEGQ V +D V+    G 
Sbjct: 3  GKVKWFNAEKGYGFIERE----DGGDVFVHFSAIQEQGFKSLTEGQTVEFDIVEGT-RGP 57

Query: 65 YSAENLKLVP 74
           +A  +KLV 
Sbjct: 58 QAANVVKLVK 67


>gi|228993599|ref|ZP_04153507.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
 gi|228999635|ref|ZP_04159212.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|229163862|ref|ZP_04291803.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|228619604|gb|EEK76489.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|228760161|gb|EEM09130.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|228766190|gb|EEM14836.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V+++ V+ + 
Sbjct: 1  MQTGKVKWFNGEKGFGFIEVE----GGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|83944389|ref|ZP_00956843.1| cold shock family protein [Sulfitobacter sp. EE-36]
 gi|83953430|ref|ZP_00962152.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
 gi|254486516|ref|ZP_05099721.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
          GAI101]
 gi|83842398|gb|EAP81566.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
 gi|83844712|gb|EAP82595.1| cold shock family protein [Sulfitobacter sp. EE-36]
 gi|214043385|gb|EEB84023.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
          GAI101]
          Length = 68

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G      DVF+H SAV  AGL  L + Q VT+D  +   
Sbjct: 1  MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLADNQKVTFDI-EAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N+ L
Sbjct: 57 DGRESASNIAL 67


>gi|217969672|ref|YP_002354906.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
 gi|217506999|gb|ACK54010.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  +D+F H SA+  +G  +L EG+ V++D  Q   
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAITMSGFKSLKEGEKVSFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|323488057|ref|ZP_08093310.1| cold shock protein [Planococcus donghaensis MPA1U2]
 gi|323398325|gb|EGA91118.1| cold shock protein [Planococcus donghaensis MPA1U2]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V ++  + + 
Sbjct: 1  MQEGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIQGEGFKTLDEGQRVEFEVEEGNR 56

Query: 62 NGKYSAENLKLV 73
               A N+  V
Sbjct: 57 G--PQATNVTKV 66


>gi|293376790|ref|ZP_06623011.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
          PC909]
 gi|325838186|ref|ZP_08166522.1| cold shock protein CspB [Turicibacter sp. HGF1]
 gi|292644572|gb|EFF62661.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
          PC909]
 gi|325490857|gb|EGC93158.1| cold shock protein CspB [Turicibacter sp. HGF1]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKGYGFIT +    +GD+VF H S + S G   L EGQ V ++  Q + 
Sbjct: 1  MATGTVKWFNADKGYGFITVD----NGDEVFAHFSEIQSDGFKTLEEGQKVEFEITQGN- 55

Query: 62 NGKYSAENLKL 72
           G  ++  +KL
Sbjct: 56 RGPQASHIVKL 66


>gi|257784693|ref|YP_003179910.1| cold-shock DNA-binding domain-containing protein [Atopobium
          parvulum DSM 20469]
 gi|257473200|gb|ACV51319.1| cold-shock DNA-binding domain protein [Atopobium parvulum DSM
          20469]
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NPDKGYGFI+ E     GDD+F+H S +   G   L EGQ V ++      
Sbjct: 1  MAQGTVKWFNPDKGYGFISRE----DGDDLFVHFSEIQMDGFKTLDEGQPVEFEIT-TGQ 55

Query: 62 NGKYSAENL 70
          NGK  A ++
Sbjct: 56 NGKLQASSV 64


>gi|225571084|ref|ZP_03780101.1| hypothetical protein CLOHYLEM_07184 [Clostridium hylemonae DSM
           15053]
 gi|225160165|gb|EEG72784.1| hypothetical protein CLOHYLEM_07184 [Clostridium hylemonae DSM
           15053]
          Length = 103

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           ++ G++KW+N  KG+GFIT +     G DVF+H SA+ S G   L EGQ VT+D   +  
Sbjct: 35  MNSGTVKWFNSQKGFGFITDDQ----GGDVFVHFSAIVSNGFKTLEEGQKVTFDTETDPK 90

Query: 62  N-GKYSAENL 70
           +  K  A N+
Sbjct: 91  DSSKLKAVNV 100


>gi|213024594|ref|ZP_03339041.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
          Length = 71

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQG-P 56

Query: 62 NGKYSAENLKLVPKS 76
           G +++  + +  ++
Sbjct: 57 KGNHASVIVPIEAEA 71


>gi|50120233|ref|YP_049400.1| cold shock protein CspE [Pectobacterium atrosepticum SCRI1043]
 gi|227114408|ref|ZP_03828064.1| cold shock protein CspE [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
 gi|227329730|ref|ZP_03833754.1| cold shock protein CspE [Pectobacterium carotovorum subsp.
          carotovorum WPP14]
 gi|253687566|ref|YP_003016756.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|261822402|ref|YP_003260508.1| cold shock protein CspE [Pectobacterium wasabiae WPP163]
 gi|49610759|emb|CAG74204.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043]
 gi|251754144|gb|ACT12220.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|261606415|gb|ACX88901.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
          Length = 69

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+ S G   L EGQ V ++   + A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-DGAKG 60

Query: 64 KYSAEN 69
            +A  
Sbjct: 61 PSAANV 66


>gi|322412804|gb|EFY03712.1| Major cold-shock protein [Streptococcus dysgalactiae subsp.
          dysgalactiae ATCC 27957]
 gi|323128184|gb|ADX25481.1| Major cold-shock protein [Streptococcus dysgalactiae subsp.
          equisimilis ATCC 12394]
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI    STE+G DVF H SA+ + G   L EGQ V +D  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVEFDVEEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--PQAVNITKL 66


>gi|94991342|ref|YP_599442.1| cold shock protein [Streptococcus pyogenes MGAS10270]
 gi|94544850|gb|ABF34898.1| Cold shock protein [Streptococcus pyogenes MGAS10270]
          Length = 69

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+     E+G DVF H SA+ + G   L EGQ V +D  +   
Sbjct: 3  MAQGTVKWFNAEKGFGFIS----AENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 58

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 59 G--PQAVNITKL 68


>gi|313679366|ref|YP_004057105.1| cold-shock DNA-binding protein family [Oceanithermus profundus
          DSM 14977]
 gi|313152081|gb|ADR35932.1| cold-shock DNA-binding protein family [Oceanithermus profundus
          DSM 14977]
          Length = 71

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  E     G DVF+H SA+ S+G   L EG +V ++ V++  
Sbjct: 1  MEKGKVKWFNAEKGYGFIERE----GGSDVFVHFSAINSSGFRTLNEGDVVEFE-VEDGP 55

Query: 62 NGKYSAENLKLVPKSS 77
           G  +A N+ +V  + 
Sbjct: 56 KGPSAA-NVTVVESAG 70


>gi|152967548|ref|YP_001363332.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
          SRS30216]
 gi|151362065|gb|ABS05068.1| putative cold-shock DNA-binding domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P   T+ G DVF+H SA+A  G  NL E   V Y+  Q  A
Sbjct: 1  MAQGTVKWFNGEKGFGFIAP---TDGGPDVFVHYSAIAGNGFRNLEENDQVEYEVTQG-A 56

Query: 62 NGKYSAENLKL 72
           G  ++   +L
Sbjct: 57 KGPQASNVTRL 67


>gi|312144475|ref|YP_003995921.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
 gi|309388505|gb|ADO76385.1| cold-shock DNA-binding protein family [Halanaerobium praevalens
          DSM 2228]
 gi|311905126|gb|ADQ15567.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M++ G++KW++  KG+GFI  E     GDDVF H SA+   G  NL EGQ V ++ V+ D
Sbjct: 1  MIYTGTVKWFDGKKGFGFIERE----DGDDVFAHFSAIEEEGFKNLDEGQEVEFEIVEGD 56

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 57 -RGPQAANIVKL 67


>gi|294498556|ref|YP_003562256.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295703859|ref|YP_003596934.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294348493|gb|ADE68822.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294801518|gb|ADF38584.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI      E GDDVF+H SA+   G  +L EGQ VT+D  Q   
Sbjct: 1  MTQGTVKWFNADKGFGFIE----IEGGDDVFVHFSAIQGEGFKSLEEGQKVTFDIEQGQ- 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGAQAANV 63


>gi|163857106|ref|YP_001631404.1| cold shock-like protein [Bordetella petrii DSM 12804]
 gi|163260834|emb|CAP43136.1| cold shock-like protein [Bordetella petrii]
          Length = 68

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFITP+   +   D+F H S ++S G  +L E Q VT++  Q   
Sbjct: 1  MATGIVKWFNAEKGYGFITPD---DGSKDLFAHYSEISSEGYKSLQENQRVTFEVGQGPK 57

Query: 62 NGKYSAENLKL 72
              SA+N+K+
Sbjct: 58 G--PSAKNIKV 66


>gi|260431448|ref|ZP_05785419.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415276|gb|EEX08535.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 68

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   + G DVF+H S+V  +GL  L + Q VTY+  +   
Sbjct: 1  MPAGTVKWFNTTKGFGFIAPE---DGGKDVFVHISSVERSGLTGLADNQKVTYEL-RAGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA+N++LV
Sbjct: 57 DGRESADNIELV 68


>gi|226310435|ref|YP_002770329.1| cold shock protein [Brevibacillus brevis NBRC 100599]
 gi|226093383|dbj|BAH41825.1| cold shock protein [Brevibacillus brevis NBRC 100599]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     +DVF+H SA+   G  +L EGQ VT+D  Q   
Sbjct: 1  MEQGTVKWFNAEKGFGFIEREGK----EDVFVHFSAIQGDGFKSLDEGQKVTFDVEQGQR 56

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 57 G--PQATNVQKV 66


>gi|163735236|ref|ZP_02142671.1| cold shock protein CspA [Roseobacter litoralis Och 149]
 gi|161391450|gb|EDQ15784.1| cold shock protein CspA [Roseobacter litoralis Och 149]
          Length = 68

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+     G D+F+H SAV  AGL  L + Q VT++  +   
Sbjct: 1  MASGTVKWFNTTKGYGFIAPD---NGGKDIFVHISAVERAGLTGLADNQKVTFEI-ETSR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA +L +
Sbjct: 57 DGRESASDLAI 67


>gi|328957165|ref|YP_004374551.1| putative cold shock protein, CspA family [Carnobacterium sp.
          17-4]
 gi|328673489|gb|AEB29535.1| putative cold shock protein, CspA family [Carnobacterium sp.
          17-4]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG+    DDVF+H SA+   G  +L EGQ VT+D  + + 
Sbjct: 1  MEQGTVKWFNAEKGFGFIEREGA----DDVFVHFSAIQGEGFKSLEEGQAVTFDVEEGN- 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGPQAANV 63


>gi|104783080|ref|YP_609578.1| cold shock protein [Pseudomonas entomophila L48]
 gi|95112067|emb|CAK16794.1| putative cold shock protein [Pseudomonas entomophila L48]
          Length = 196

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  +  D   
Sbjct: 130 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMHRDKG- 184

Query: 64  KYSAENLKLVPK 75
              AE++  V +
Sbjct: 185 -LQAEDVVAVSR 195


>gi|323139562|ref|ZP_08074607.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
 gi|322395181|gb|EFX97737.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
          Length = 69

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AG+ +L+EGQ ++YD + +  
Sbjct: 1  MFYGTVKWFNAQKGFGFIQPD---DGGKDVFVHISAVEQAGMRDLSEGQKLSYDVIDDRR 57

Query: 62 NGKYSAENL 70
          +GK SA  L
Sbjct: 58 SGKASAGKL 66


>gi|309388512|gb|ADO76392.1| cold-shock DNA-binding protein family [Halanaerobium praevalens
          DSM 2228]
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M++ G++KW++  KG+GFI  E     GDDVF H SA+   G  NL EGQ V ++ V+ D
Sbjct: 1  MIYTGTVKWFDGKKGFGFIERE----DGDDVFAHFSAIEEEGFKNLEEGQEVEFEIVEGD 56

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 57 -RGPQAANIVKL 67


>gi|296103113|ref|YP_003613259.1| DNA replication inhibitor [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|295057572|gb|ADF62310.1| DNA replication inhibitor [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
          Length = 73

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|91783753|ref|YP_558959.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|187924184|ref|YP_001895826.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|296163324|ref|ZP_06846084.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|91687707|gb|ABE30907.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
 gi|187715378|gb|ACD16602.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|295886416|gb|EFG66274.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H S + S G  +L E Q V+++  Q   
Sbjct: 1  MPTGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRSEGFKSLQENQKVSFEIKQG-P 56

Query: 62 NGKYSAE 68
           GK +A+
Sbjct: 57 KGKQAAD 63


>gi|320449421|ref|YP_004201517.1| cold shock protein, CSD family [Thermus scotoductus SA-01]
 gi|320149590|gb|ADW20968.1| cold shock protein, CSD family [Thermus scotoductus SA-01]
          Length = 73

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  EG T    DVF+H SA+ + G   L EG +VT+D      
Sbjct: 1  MQKGRVKWFNAEKGYGFIEREGDT----DVFVHFSAINAKGFRTLNEGDIVTFDVEPGKN 56

Query: 62 NGKYSAENLKLVPKS 76
               A N+ +V  +
Sbjct: 57 GKGPQAVNVTVVEPA 71


>gi|254512032|ref|ZP_05124099.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
          bacterium KLH11]
 gi|221535743|gb|EEE38731.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae
          bacterium KLH11]
          Length = 68

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   E G DVF+H SAV  +GL  L + Q VTY+  +   
Sbjct: 1  MPAGTVKWFNTTKGFGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVTYEL-RAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA+N++L
Sbjct: 57 DGRESADNIEL 67


>gi|254381183|ref|ZP_04996548.1| cold shock protein scoF [Streptomyces sp. Mg1]
 gi|254381243|ref|ZP_04996608.1| cold shock protein scoF [Streptomyces sp. Mg1]
 gi|254381451|ref|ZP_04996815.1| cold shock protein scoF [Streptomyces sp. Mg1]
 gi|194340093|gb|EDX21059.1| cold shock protein scoF [Streptomyces sp. Mg1]
 gi|194340153|gb|EDX21119.1| cold shock protein scoF [Streptomyces sp. Mg1]
 gi|194340360|gb|EDX21326.1| cold shock protein scoF [Streptomyces sp. Mg1]
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H SA+ S+G   L EGQ+VT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSSGFRELQEGQVVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|328952776|ref|YP_004370110.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
          DSM 11109]
 gi|328453100|gb|AEB08929.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
          DSM 11109]
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KG+GFI+ E    SG DVF+H SA+ + G  +L+E Q V ++ VQ  
Sbjct: 1  MKENGTVKWFNNSKGFGFISRE----SGPDVFVHHSAIQTDGYRSLSENQAVEFEVVQGP 56

Query: 61 ANGKYSAENLKLV 73
                A+N+ ++
Sbjct: 57 KG--VQAQNVVIL 67


>gi|319944075|ref|ZP_08018354.1| cold shock transcription regulator protein [Lautropia mirabilis
          ATCC 51599]
 gi|319742652|gb|EFV95060.1| cold shock transcription regulator protein [Lautropia mirabilis
          ATCC 51599]
          Length = 68

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E G+D+F H S+V + G   L EGQ V++D VQ   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSSVQTQGFKTLKEGQKVSFDVVQG-P 56

Query: 62 NGKYSAE 68
           GK ++ 
Sbjct: 57 KGKQASN 63


>gi|294498464|ref|YP_003562164.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294500157|ref|YP_003563857.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295705519|ref|YP_003598594.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294348401|gb|ADE68730.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294350094|gb|ADE70423.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294803178|gb|ADF40244.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI      E GDDVF+H S++   G  +L EGQ VT+D  Q   
Sbjct: 1  MEQGTVKWFNADKGFGFIE----IEGGDDVFVHFSSIQGEGFKSLEEGQKVTFDIEQGQ- 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 RGAQAANVHKV 66


>gi|72160788|ref|YP_288445.1| cold-shock DNA-binding protein family protein [Thermobifida fusca
          YX]
 gi|71914520|gb|AAZ54422.1| cold-shock DNA-binding protein family [Thermobifida fusca YX]
          Length = 67

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +G    G DVF+H SA+A  G  NL E Q V ++ V    
Sbjct: 1  MAQGTVKWFNSEKGFGFIAVDG---GGPDVFVHYSAIAGTGFRNLEENQAVEFEIV-PGP 56

Query: 62 NGKYSAEN 69
           G  +A+ 
Sbjct: 57 KGPQAADV 64


>gi|312882977|ref|ZP_07742708.1| putative cold shock protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369137|gb|EFP96658.1| putative cold shock protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 70

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFITPE     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 6  NGTVKWFNEEKGFGFITPE---NGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQ-KG 61

Query: 64 KYSAENL 70
            +A  +
Sbjct: 62 PQAANVV 68


>gi|288959551|ref|YP_003449892.1| cold shock protein [Azospirillum sp. B510]
 gi|288911859|dbj|BAI73348.1| cold shock protein [Azospirillum sp. B510]
          Length = 69

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE       DVF+H +AV  +GL  L+EGQ V ++  + + 
Sbjct: 1  MTNGTVKWFNTTKGYGFIAPEA---GAKDVFVHITAVQRSGLHALSEGQRVQFEVARGN- 56

Query: 62 NGKYSAENLKLVP 74
          NGK SA N+ +V 
Sbjct: 57 NGKDSAVNISVVE 69


>gi|315639698|ref|ZP_07894837.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
 gi|315484475|gb|EFU74932.1| cold shock protein CspA [Enterococcus italicus DSM 15952]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFIT     E G+DVF+H SA+   G   L EGQ VT+D  +   
Sbjct: 1  MNNGTVKWFNSEKGFGFIT----AEDGNDVFVHFSAIQGDGFKTLEEGQAVTFDVEEGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQATNVE 64


>gi|28377002|ref|NP_783894.1| cold shock protein CspL [Lactobacillus plantarum WCFS1]
 gi|254555197|ref|YP_003061614.1| cold shock protein CspL [Lactobacillus plantarum JDM1]
 gi|308179219|ref|YP_003923347.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|2493769|sp|P96349|CSP2_LACPL RecName: Full=Cold shock protein 2
 gi|1869948|emb|CAA70139.1| cold shock protein [Lactobacillus plantarum]
 gi|9968448|emb|CAC06093.1| cold shock protein [Lactobacillus plantarum]
 gi|28269833|emb|CAD62730.1| cold shock protein CspL [Lactobacillus plantarum WCFS1]
 gi|254044124|gb|ACT60917.1| cold shock protein CspL [Lactobacillus plantarum JDM1]
 gi|308044710|gb|ADN97253.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT     E G DVF+H SA+ + G   L EGQ VTYD  Q D 
Sbjct: 1  MKNGTVKWFNADKGFGFIT----GEDGTDVFVHFSAIQTDGFKTLDEGQKVTYDEEQGDR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQATNVQ 64


>gi|172058938|ref|YP_001815398.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|171991459|gb|ACB62381.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
          255-15]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ V ++  +  A
Sbjct: 1  MNTGKVKWFNAEKGFGFIEVE----GGEDVFVHFSAITGEGFKSLDEGQEVEFEITEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGAQAANVVKL 66


>gi|317127375|ref|YP_004093657.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
 gi|315472323|gb|ADU28926.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ VT+D  Q   
Sbjct: 1  MQQGTVKWFNAEKGFGFIEVE----GGDDVFVHFSAIQGEGFKSLDEGQAVTFDVEQGQR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--PQATNV 63


>gi|218778358|ref|YP_002429676.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218759742|gb|ACL02208.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 66

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI  E     G DVF+H SA++ +G   L EG  V++D V+   
Sbjct: 1  MANGTVKWFNDSKGYGFIERE----EGGDVFVHYSAISGSGFKTLAEGDRVSFD-VEEGQ 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 KGPAAANVIKL 66


>gi|282856781|ref|ZP_06266042.1| conserved domain protein [Pyramidobacter piscolens W5455]
 gi|282585404|gb|EFB90711.1| conserved domain protein [Pyramidobacter piscolens W5455]
          Length = 70

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFIT    TE G DVF+H SA+   G  +L E + V +D V +   G
Sbjct: 7  KGKVKWFNSTKGFGFIT----TEEGKDVFVHFSAIKMDGYKSLEENEEVEFDVV-DGEKG 61

Query: 64 KYSAENLKL 72
            +A  ++L
Sbjct: 62 PQAANVVRL 70


>gi|91785349|ref|YP_560555.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|187925500|ref|YP_001897142.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|209516559|ref|ZP_03265413.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|296159494|ref|ZP_06842318.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|307731142|ref|YP_003908366.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1003]
 gi|323527488|ref|YP_004229641.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1001]
 gi|91689303|gb|ABE32503.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
 gi|187716694|gb|ACD17918.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|209503000|gb|EEA03002.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295890202|gb|EFG69996.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|307585677|gb|ADN59075.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
 gi|323384490|gb|ADX56581.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 67

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+G    G+D+F H S + + G   L E Q VT++ V+   
Sbjct: 1  METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRTEGFKTLQENQKVTFE-VKTGP 56

Query: 62 NGKYSAENLKLV 73
           GK +A N+K V
Sbjct: 57 KGKQAA-NIKPV 67


>gi|53717183|ref|YP_105587.1| cold-shock domain-contain protein [Burkholderia mallei ATCC
          23344]
 gi|53722389|ref|YP_111374.1| cold shock-like protein [Burkholderia pseudomallei K96243]
 gi|67640593|ref|ZP_00439394.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
          horse 4]
 gi|76818479|ref|YP_335547.1| cold shock transcriptional regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|121596928|ref|YP_990092.1| cold-shock domain-contain protein [Burkholderia mallei SAVP1]
 gi|124383143|ref|YP_001023992.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
          10229]
 gi|126444073|ref|YP_001062939.1| hypothetical protein BURPS668_A1944 [Burkholderia pseudomallei
          668]
 gi|126447704|ref|YP_001078627.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
          10247]
 gi|126455982|ref|YP_001075887.1| cold-shock domain-contain protein [Burkholderia pseudomallei
          1106a]
 gi|166999526|ref|ZP_02265363.1| cold-shock DNA-binding domain protein [Burkholderia mallei
          PRL-20]
 gi|167723959|ref|ZP_02407195.1| cold-shock domain family protein [Burkholderia pseudomallei DM98]
 gi|167742930|ref|ZP_02415704.1| cold-shock domain family protein [Burkholderia pseudomallei 14]
 gi|167820105|ref|ZP_02451785.1| cold-shock domain family protein [Burkholderia pseudomallei 91]
 gi|167828481|ref|ZP_02459952.1| cold-shock domain family protein [Burkholderia pseudomallei 9]
 gi|167849936|ref|ZP_02475444.1| cold-shock domain family protein [Burkholderia pseudomallei
          B7210]
 gi|167898541|ref|ZP_02485942.1| cold-shock domain family protein [Burkholderia pseudomallei 7894]
 gi|167906890|ref|ZP_02494095.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC
          13177]
 gi|167915247|ref|ZP_02502338.1| cold-shock domain family protein [Burkholderia pseudomallei 112]
 gi|167923078|ref|ZP_02510169.1| cold-shock domain family protein [Burkholderia pseudomallei
          BCC215]
 gi|217425337|ref|ZP_03456831.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
 gi|226199127|ref|ZP_03794689.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|237510263|ref|ZP_04522978.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|242312121|ref|ZP_04811138.1| cold-shock domain family protein [Burkholderia pseudomallei
          1106b]
 gi|254176187|ref|ZP_04882845.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
 gi|254183753|ref|ZP_04890345.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
 gi|254186667|ref|ZP_04893183.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|254194434|ref|ZP_04900866.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
 gi|254200381|ref|ZP_04906746.1| cold-shock domain family protein [Burkholderia mallei FMH]
 gi|254263480|ref|ZP_04954345.1| cold-shock domain family protein [Burkholderia pseudomallei
          1710a]
 gi|254301649|ref|ZP_04969093.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
 gi|254356632|ref|ZP_04972907.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
 gi|52212803|emb|CAH38835.1| putative cold shock-like protein [Burkholderia pseudomallei
          K96243]
 gi|52423153|gb|AAU46723.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344]
 gi|76582952|gb|ABA52426.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|121224726|gb|ABM48257.1| cold-shock domain family protein [Burkholderia mallei SAVP1]
 gi|124291163|gb|ABN00433.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
          10229]
 gi|126223564|gb|ABN87069.1| conserved domain protein [Burkholderia pseudomallei 668]
 gi|126229750|gb|ABN93163.1| cold-shock domain family protein [Burkholderia pseudomallei
          1106a]
 gi|126240558|gb|ABO03670.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
          10247]
 gi|147747993|gb|EDK55068.1| cold-shock domain family protein [Burkholderia mallei FMH]
 gi|148025659|gb|EDK83782.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
 gi|157810787|gb|EDO87957.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
 gi|157934351|gb|EDO90021.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|160697229|gb|EDP87199.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
 gi|169651185|gb|EDS83878.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
 gi|184214286|gb|EDU11329.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
 gi|217391588|gb|EEC31616.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
 gi|225928902|gb|EEH24927.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|235002468|gb|EEP51892.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|238521343|gb|EEP84795.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
          horse 4]
 gi|242135360|gb|EES21763.1| cold-shock domain family protein [Burkholderia pseudomallei
          1106b]
 gi|243064365|gb|EES46551.1| cold-shock DNA-binding domain protein [Burkholderia mallei
          PRL-20]
 gi|254214482|gb|EET03867.1| cold-shock domain family protein [Burkholderia pseudomallei
          1710a]
          Length = 67

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     GDD+F H S + S G   L E Q V+++  +   
Sbjct: 1  MDTGTVKWFNETKGFGFITPDS---GGDDLFAHFSEIRSEGYKTLAENQKVSFE-TKRGP 56

Query: 62 NGKYSAENLKLV 73
           G  +A N+K +
Sbjct: 57 KGLQAA-NIKPL 67


>gi|224824174|ref|ZP_03697282.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
 gi|224603593|gb|EEG09768.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
          Length = 67

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E GDD+F H S + + G   L E Q V++D      
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---EGGDDIFAHFSQIKANGFKTLAENQRVSFDVTMGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--KQASNIQPL 67


>gi|163733825|ref|ZP_02141267.1| cold shock protein CspA-related protein, putative [Roseobacter
          litoralis Och 149]
 gi|161392936|gb|EDQ17263.1| cold shock protein CspA-related protein, putative [Roseobacter
          litoralis Och 149]
          Length = 68

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G      DVF+H SAV  AGL  L++ Q VT+D  +   
Sbjct: 1  MATGTVKWFNSTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLSDDQKVTFDI-EAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESASNLAL 67


>gi|134300024|ref|YP_001113520.1| cold-shock DNA-binding domain-containing protein
          [Desulfotomaculum reducens MI-1]
 gi|134052724|gb|ABO50695.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens
          MI-1]
          Length = 65

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     +E G DVF+H SA+ S G   L EG+ V ++ ++    G
Sbjct: 2  QGKVKWFNANKGYGFIE----SEIGTDVFVHYSAIQSEGYRTLEEGEPVDFEIIEGT-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVIKL 65


>gi|307729849|ref|YP_003907073.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1003]
 gi|323525902|ref|YP_004228055.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1001]
 gi|307584384|gb|ADN57782.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
 gi|323382904|gb|ADX54995.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 67

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H S + + G  +L E Q V+++  Q   
Sbjct: 1  MPTGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRAEGFKSLQENQKVSFEVKQG-P 56

Query: 62 NGKYSAE 68
           GK +A+
Sbjct: 57 KGKQAAD 63


>gi|52080703|ref|YP_079494.1| cold-shock protein [Bacillus licheniformis ATCC 14580]
 gi|52786076|ref|YP_091905.1| CspD [Bacillus licheniformis ATCC 14580]
 gi|154686439|ref|YP_001421600.1| CspD [Bacillus amyloliquefaciens FZB42]
 gi|296329499|ref|ZP_06871986.1| CspD [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674824|ref|YP_003866496.1| RNA-helicase co-factor [Bacillus subtilis subsp. spizizenii str.
          W23]
 gi|308173984|ref|YP_003920689.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus amyloliquefaciens DSM 7]
 gi|311068704|ref|YP_003973627.1| RNA-helicase co-factor [Bacillus atrophaeus 1942]
 gi|319645338|ref|ZP_07999571.1| cold shock protein cspD [Bacillus sp. BT1B_CT2]
 gi|52003914|gb|AAU23856.1| cold-shock protein [Bacillus licheniformis ATCC 14580]
 gi|52348578|gb|AAU41212.1| CspD [Bacillus licheniformis ATCC 14580]
 gi|154352290|gb|ABS74369.1| CspD [Bacillus amyloliquefaciens FZB42]
 gi|296153381|gb|EFG94243.1| CspD [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413068|gb|ADM38187.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus subtilis subsp. spizizenii str. W23]
 gi|307606848|emb|CBI43219.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus amyloliquefaciens DSM 7]
 gi|310869221|gb|ADP32696.1| RNA-helicase co-factor [Bacillus atrophaeus 1942]
 gi|317393147|gb|EFV73941.1| cold shock protein cspD [Bacillus sp. BT1B_CT2]
 gi|328553088|gb|AEB23580.1| RNA-helicase co-factor [Bacillus amyloliquefaciens TA208]
 gi|328912139|gb|AEB63735.1| Cold-shock protein, molecular chaperone, RNA-helicase co-factor
          [Bacillus amyloliquefaciens LL3]
          Length = 66

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     GDDVF+H +A+   G  +L EGQ V+++ V+ + 
Sbjct: 1  MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIEGEGYKSLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  ++  +KL
Sbjct: 56 RGPQASNVVKL 66


>gi|299821691|ref|ZP_07053579.1| cold shock protein CspA [Listeria grayi DSM 20601]
 gi|299817356|gb|EFI84592.1| cold shock protein CspA [Listeria grayi DSM 20601]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI     TE+G+D+F H +A+   G   L EGQ V+++ V+ + 
Sbjct: 1  MQNGKVKWFNNEKGYGFIE----TENGEDIFAHFTAIQGDGYKTLEEGQSVSFEVVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAANIEKL 66


>gi|261345563|ref|ZP_05973207.1| conserved domain protein [Providencia rustigianii DSM 4541]
 gi|282566611|gb|EFB72146.1| conserved domain protein [Providencia rustigianii DSM 4541]
          Length = 70

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP    +   DVF+H SA+ S     L EGQ V++  V++ A G
Sbjct: 6  TGLVKWFNDDKGFGFITP---ADGSKDVFVHFSAIQSDDFKTLHEGQKVSFS-VESGAKG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVVAL 70


>gi|228475724|ref|ZP_04060442.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|228270506|gb|EEK11941.1| conserved hypothetical protein [Staphylococcus hominis SK119]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E     GDDVF+H S +A+ G   L EGQ V +D  +   
Sbjct: 1  MNNGTVKWFNAEKGFGFIERE----DGDDVFVHFSGIATDGYKTLEEGQKVEFDITEGQ- 55

Query: 62 NGKYSAENLKL 72
           GK +   + +
Sbjct: 56 RGKQATNVVPV 66


>gi|226312661|ref|YP_002772555.1| cold shock protein [Brevibacillus brevis NBRC 100599]
 gi|226095609|dbj|BAH44051.1| cold shock protein [Brevibacillus brevis NBRC 100599]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V ++ VQ +
Sbjct: 1  MQTNGTVKWFNAEKGFGFIQVE----GGDDVFVHFSAIQGDGFKTLDEGQKVQFNIVQGN 56

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 57 -RGPQAENVVKL 67


>gi|304317414|ref|YP_003852559.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|323704655|ref|ZP_08116233.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
 gi|302778916|gb|ADL69475.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|323536117|gb|EGB25890.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KGYGFI  E     G DVF+H SA+   G   L EGQ V +D V+ + 
Sbjct: 1  MVRGKVKWFNAEKGYGFIERE----GGSDVFVHYSAIEQDGFKTLEEGQEVEFDIVEAE- 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 KGPQAANVKKV 66


>gi|114776511|ref|ZP_01451556.1| Cold-shock protein, DNA-binding [Mariprofundus ferrooxydans PV-1]
 gi|114553341|gb|EAU55739.1| Cold-shock protein, DNA-binding [Mariprofundus ferrooxydans PV-1]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+ +   + GDDVF+H S++   G  +L EGQLV +D V+N A
Sbjct: 1  MATGTVKWFNDTKGFGFISQD---DGGDDVFVHFSSIQGDGFKSLAEGQLVEFD-VENGA 56

Query: 62 NGKYSAEN 69
           G  ++  
Sbjct: 57 KGPQASNV 64


>gi|307298799|ref|ZP_07578601.1| cold-shock DNA-binding domain protein [Thermotogales bacterium
          mesG1.Ag.4.2]
 gi|306915224|gb|EFN45609.1| cold-shock DNA-binding domain protein [Thermotogales bacterium
          mesG1.Ag.4.2]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFIT +     G DVF+H SA+   G   L EGQ V ++ V++   G
Sbjct: 2  TGTVKWFNGTKGYGFITKD----DGGDVFVHFSAIEMDGFKTLDEGQRVEFE-VEDGPKG 56

Query: 64 KYSAEN 69
            +A+ 
Sbjct: 57 PQAAKV 62


>gi|73539164|ref|YP_299531.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|94314737|ref|YP_587946.1| cold-shock DNA-binding protein family [Cupriavidus metallidurans
          CH34]
 gi|116693962|ref|YP_728173.1| cold-shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|188591849|ref|YP_001796447.1| cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
 gi|72122501|gb|AAZ64687.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
 gi|93358589|gb|ABF12677.1| cold-shock DNA-binding protein family [Cupriavidus metallidurans
          CH34]
 gi|113528461|emb|CAJ94808.1| Cold-shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|170938223|emb|CAP63208.1| Cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G D+F H S +  +G   L +GQ VT++  Q   
Sbjct: 1  MATGTVKWFNETKGFGFITPD---DGGADLFAHFSEIQGSGFKTLKDGQRVTFEVKQGPK 57

Query: 62 NGKYSA 67
            + SA
Sbjct: 58 GLQASA 63


>gi|319891930|ref|YP_004148805.1| Cold shock protein CspC [Staphylococcus pseudintermedius
          HKU10-03]
 gi|317161626|gb|ADV05169.1| Cold shock protein CspC [Staphylococcus pseudintermedius
          HKU10-03]
 gi|323464979|gb|ADX77132.1| cold shock protein B [Staphylococcus pseudintermedius ED99]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E    +GDDVF+H SA+   G  +L EGQ V +D V+ + 
Sbjct: 1  MNNGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIVGDGYKSLEEGQNVDFDIVEGE- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +K+
Sbjct: 56 RGAQAANVVKM 66


>gi|150389111|ref|YP_001319160.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus
          metalliredigens QYMF]
 gi|149948973|gb|ABR47501.1| putative cold-shock DNA-binding domain protein [Alkaliphilus
          metalliredigens QYMF]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V ++ V+ + 
Sbjct: 1  MKTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAITGDGFKTLEEGQKVEFNVVEGNR 56

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 57 G--PQAENVAKL 66


>gi|81429174|ref|YP_396175.1| cold shock protein CspA family protein [Lactobacillus sakei
          subsp. sakei 23K]
 gi|78610817|emb|CAI55868.1| Similar to cold shock protein, CspA family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGF+T E     G DVF+H SA+   G   L EGQ V++D  ++D 
Sbjct: 1  MENGTVKWFNAEKGYGFVTRE----DGSDVFVHFSAIQGEGYKTLEEGQSVSFDIEESDR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--PQAVNV 63


>gi|315644644|ref|ZP_07897776.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|329928423|ref|ZP_08282293.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
 gi|315280151|gb|EFU43448.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453]
 gi|328937859|gb|EGG34265.1| major cold shock protein CspA [Paenibacillus sp. HGF5]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ V ++ VQ + 
Sbjct: 1  MQTGTVKWFNAEKGFGFIEVE----GGEDVFVHFSAITGDGFKSLDEGQRVEFNVVQGNR 56

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 57 G--QQAENV 63


>gi|74316873|ref|YP_314613.1| cold-shock DNA-binding protein family protein [Thiobacillus
          denitrificans ATCC 25259]
 gi|74056368|gb|AAZ96808.1| Possible Cold-shock DNA-binding domain protein [Thiobacillus
          denitrificans ATCC 25259]
          Length = 68

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++  KG+GFITP+   + G+DVF H SA+ + G   L EGQ V+++  Q   
Sbjct: 1  MATGTVKWFSDAKGFGFITPD---DGGEDVFAHFSAIQTNGFKTLKEGQKVSFEVSQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|299065937|emb|CBJ37118.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum
          CMR15]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+   E G+++F H SA+   G   L EGQ V +D  Q+  
Sbjct: 1  MANGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQSPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQATNIQ 65


>gi|212633937|ref|YP_002310462.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3]
 gi|212555421|gb|ACJ27875.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3]
          Length = 70

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFIT +     G DVF+H  A+AS G   L EGQ V++D  Q    G
Sbjct: 6  TGIVKWFNEDKGFGFITQD---NGGADVFVHFRAIASDGFKTLAEGQKVSFDLEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 62 PQAANVVAI 70


>gi|229917667|ref|YP_002886313.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b]
 gi|229469096|gb|ACQ70868.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KGYGFI      E GDDVF+H SA+   G   L EGQ VT++   + A
Sbjct: 1  MNTGKVKWFNSEKGYGFIE----MEGGDDVFVHFSAIQGDGFKTLEEGQEVTFEIT-DGA 55

Query: 62 NGKYSAENLKL 72
           G  ++   K+
Sbjct: 56 RGPQASNVEKI 66


>gi|226228145|ref|YP_002762251.1| cold shock protein [Gemmatimonas aurantiaca T-27]
 gi|226091336|dbj|BAH39781.1| cold shock protein [Gemmatimonas aurantiaca T-27]
          Length = 70

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N  KG+GFITP+   +   D F+H SA+   G   L EG+ V +D VQ  
Sbjct: 1  MRTTGKVKWFNDAKGFGFITPD---DGSKDCFVHHSAIQGGGFRTLAEGERVEFDIVQGQ 57

Query: 61 ANGKYSAENLKLV 73
               +AE +  V
Sbjct: 58 KG--PAAEQVTKV 68


>gi|162149571|ref|YP_001604032.1| cold shock protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544805|ref|YP_002277034.1| cold-shock DNA-binding domain-containing protein
          [Gluconacetobacter diazotrophicus PAl 5]
 gi|148530010|gb|ABQ82211.1| cold shock protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788148|emb|CAP57753.1| putative cold shock protein [Gluconacetobacter diazotrophicus PAl
          5]
 gi|209532482|gb|ACI52419.1| cold-shock DNA-binding domain protein [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 68

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    +   DVF+H SAV  AGL  L EGQ ++Y+  +   
Sbjct: 1  MATGTVKWFNSQKGFGFIQP---NDGSSDVFVHISAVERAGLRGLNEGQTISYEL-ETGR 56

Query: 62 NGKYSAENLK 71
          N K SA NLK
Sbjct: 57 NNKTSAVNLK 66


>gi|110678556|ref|YP_681563.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
 gi|109454672|gb|ABG30877.1| cold shock protein CspA [Roseobacter denitrificans OCh 114]
          Length = 68

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+     G D+F+H SAV  AGL  L + Q VT++  +   
Sbjct: 1  MASGTVKWFNTTKGYGFIAPDS---GGKDIFVHISAVERAGLTGLADNQKVTFEI-ETSR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA +L +
Sbjct: 57 DGRESASDLAI 67


>gi|90414568|ref|ZP_01222542.1| putative cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90414570|ref|ZP_01222544.1| putative cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90324375|gb|EAS40941.1| putative cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90324377|gb|EAS40943.1| putative cold shock-like protein [Photobacterium profundum 3TCK]
          Length = 69

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V++D  Q    G
Sbjct: 5  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQGQ-KG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PQAANVVAL 69


>gi|294500155|ref|YP_003563855.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295705517|ref|YP_003598592.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294350092|gb|ADE70421.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294803176|gb|ADF40242.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  E    +GDDVF+H SA+ S G  +L EGQ VT+D  Q   
Sbjct: 1  MEQGKVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSEGFKSLDEGQAVTFDVEQGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQASNVQ 64


>gi|323703019|ref|ZP_08114675.1| cold-shock DNA-binding domain protein [Desulfotomaculum
          nigrificans DSM 574]
 gi|323532032|gb|EGB21915.1| cold-shock DNA-binding domain protein [Desulfotomaculum
          nigrificans DSM 574]
          Length = 65

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI  E     G DVF+H SA+   G  +LTEGQ V +D V+  A G 
Sbjct: 3  GKVKWFNAEKGYGFIERE----EGGDVFVHFSAIQEEGFKSLTEGQEVEFDIVEG-ARGP 57

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 58 QAANVVKL 65


>gi|110834144|ref|YP_693003.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2]
 gi|110647255|emb|CAL16731.1| cold-shock domain family protein [Alcanivorax borkumensis SK2]
          Length = 84

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGF+ P+   E G+D+F+H S +   G  +L  GQ V YD     A
Sbjct: 1  MATGRVKWFNNAKGYGFVRPD---EGGEDLFVHYSYIQMDGYKSLKAGQPVEYDV--QPA 55

Query: 62 NGKYSAENLKLVPKSSN 78
          N  Y A NL+   ++SN
Sbjct: 56 NKGYHAINLRTDEEASN 72


>gi|13488430|ref|NP_109437.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|14028184|dbj|BAB54776.1| cold shock protein [Mesorhizobium loti MAFF303099]
          Length = 69

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G D F+H SAV  AG+  + EGQ + Y+  ++  
Sbjct: 1  MTTGTVKWFNSTKGFGFIQPDS---GGADAFVHISAVERAGMREIVEGQKIGYEMERDSK 57

Query: 62 NGKYSAENLKLV 73
          +GK SA NL+ V
Sbjct: 58 SGKMSACNLQAV 69


>gi|332162229|ref|YP_004298806.1| cold shock-like protein [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|318606292|emb|CBY27790.1| cold shock protein CspD [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|325666459|gb|ADZ43103.1| cold shock-like protein [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330860565|emb|CBX70864.1| cold shock-like protein cspD [Yersinia enterocolitica W22703]
          Length = 85

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ+V +   Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFAVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|289705593|ref|ZP_06501984.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58]
 gi|289557674|gb|EFD50974.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI PE   ++  DVF+H SA+  +G   L E   V ++  Q+  
Sbjct: 1  MAVGTVKWFNAEKGYGFIAPE---DNSADVFVHFSAIQGSGFKELQENDRVEFE-TQDGP 56

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 57 KGLQAANVTKL 67


>gi|260599717|ref|YP_003212288.1| RNA chaperone/anti-terminator [Cronobacter turicensis z3032]
 gi|260218894|emb|CBA34249.1| Cold shock protein cspA [Cronobacter turicensis z3032]
          Length = 70

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFITP+       DVF+H SA+   G   L EGQ V++  V++ A G
Sbjct: 6  TGLVKWFNAEKGFGFITPD---NGSKDVFVHFSAIQDNGFKTLEEGQKVSF-TVESGAKG 61

Query: 64 KYSAENLKL 72
            +A    +
Sbjct: 62 PAAANVTAI 70


>gi|92112688|ref|YP_572616.1| cold-shock DNA-binding protein family protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91795778|gb|ABE57917.1| cold-shock DNA-binding protein family [Chromohalobacter salexigens
           DSM 3043]
          Length = 155

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G +KW+N +KGYGFIT +    SG+DVF+H  A+   G   L EGQ V Y  V+N+ 
Sbjct: 89  REIGEVKWFNVNKGYGFITRD----SGEDVFVHFRAIRGKGHRTLAEGQKVRYHVVENER 144

Query: 62  NGKYSAENLKLV 73
                A+++ ++
Sbjct: 145 G--LQADDVTVI 154


>gi|77462500|ref|YP_352004.1| cold-shock DNA-binding protein family protein [Rhodobacter
          sphaeroides 2.4.1]
 gi|77386918|gb|ABA78103.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          2.4.1]
          Length = 77

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G      DVF+H +A+  AG+  L +GQ V++D  + D 
Sbjct: 10 MANGTVKWFNATKGFGFIAPAG---GSKDVFVHVTALERAGIRQLDDGQAVSFDL-ERDR 65

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 66 NGRESATNLVL 76


>gi|319651118|ref|ZP_08005251.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
 gi|317397172|gb|EFV77877.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFI     +  G DVF+H SA+ + G   L EGQ VT++ V+ + 
Sbjct: 1  MNTGKVKWFNAEKGFGFIE----SSEGQDVFVHFSAIQTEGFKTLEEGQDVTFEIVEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|288918768|ref|ZP_06413114.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
 gi|288349853|gb|EFC84084.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
          Length = 68

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFIT +G    G DVF H S++   G  +L EGQ V++   Q   
Sbjct: 1  MSEGTVKWFNAEKGFGFITVDG---GGPDVFAHFSSIVGDGYKSLEEGQRVSFTIEQGQ- 56

Query: 62 NGKYSAENLKLV 73
           G  +A+   L+
Sbjct: 57 KGPQAAQVQPLI 68


>gi|260427897|ref|ZP_05781876.1| conserved domain protein [Citreicella sp. SE45]
 gi|260422389|gb|EEX15640.1| conserved domain protein [Citreicella sp. SE45]
          Length = 68

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE   E G DVF+H SAV  +GL  L + Q V+Y+  +   
Sbjct: 1  MPSGTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYELKEG-R 56

Query: 62 NGKYSAENLKLV 73
          +G+  A +LK +
Sbjct: 57 DGRMMASDLKTL 68


>gi|300723585|ref|YP_003712890.1| cold shock protein, transcription antiterminator [Xenorhabdus
          nematophila ATCC 19061]
 gi|297630107|emb|CBJ90744.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Xenorhabdus nematophila
          ATCC 19061]
          Length = 69

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITP    +   DVF+H SA+   G   L+EGQ V ++  Q+   G
Sbjct: 5  TGTVKWFNESKGFGFITP---ADGSKDVFVHFSAIVKDGFKTLSEGQQVEFEI-QDGPKG 60

Query: 64 KYSAEN 69
            +A  
Sbjct: 61 PAAANV 66


>gi|269139181|ref|YP_003295882.1| cold shock protein [Edwardsiella tarda EIB202]
 gi|267984842|gb|ACY84671.1| cold shock protein [Edwardsiella tarda EIB202]
 gi|304559100|gb|ADM41764.1| Cold shock protein [Edwardsiella tarda FL6-60]
          Length = 69

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFITP    +   DVF+H SA+ + G   L EGQ V +   Q+   
Sbjct: 4  KTGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQNDGFKTLAEGQQVEFSI-QDSPR 59

Query: 63 GKYSAENLKL 72
          G  +A+ + L
Sbjct: 60 GPAAADVVAL 69


>gi|227515455|ref|ZP_03945504.1| CspA family cold shock transcriptional regulator [Lactobacillus
          fermentum ATCC 14931]
 gi|227086169|gb|EEI21481.1| CspA family cold shock transcriptional regulator [Lactobacillus
          fermentum ATCC 14931]
 gi|299783543|gb|ADJ41541.1| CspA family cold shock transcriptional regulator [Lactobacillus
          fermentum CECT 5716]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G+IKW+N +KGYGFI+ E     GDDVF+H SA+   G   L EGQ VT+D V+N  
Sbjct: 1  MEQGTIKWFNDEKGYGFISREA----GDDVFVHFSAIQGDGFKTLEEGQSVTFD-VENGD 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGLQAANV 63


>gi|212710131|ref|ZP_03318259.1| hypothetical protein PROVALCAL_01185 [Providencia alcalifaciens
          DSM 30120]
 gi|212687338|gb|EEB46866.1| hypothetical protein PROVALCAL_01185 [Providencia alcalifaciens
          DSM 30120]
          Length = 81

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI+P    +   DVF+H SA+ S     L EGQ V++  V+N A G
Sbjct: 17 TGLVKWFNESKGFGFISP---ADGSKDVFVHFSAIQSDSFKTLNEGQKVSFS-VENGAKG 72

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 73 PAAANVVAL 81


>gi|56477397|ref|YP_158986.1| cold shock transcriptional regulator [Aromatoleum aromaticum
          EbN1]
 gi|56313440|emb|CAI08085.1| probably cold shock transcription regulator protein [Aromatoleum
          aromaticum EbN1]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H SA+  +G  +LTEGQ V YD   +  
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---NGGEDLFAHFSAIQGSGFKSLTEGQKVQYD-ETSGP 56

Query: 62 NGKYSAENLKLV 73
           GK  A N++ +
Sbjct: 57 KGKQ-AGNIRPL 67


>gi|309701157|emb|CBJ00457.1| cold shock-like protein CspD [Escherichia coli ETEC H10407]
 gi|323937987|gb|EGB34249.1| cold shock domain-containing protein CspD [Escherichia coli
          E1520]
          Length = 74

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQG-P 56

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 57 KGNHASVIVPV 67


>gi|288918913|ref|ZP_06413256.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
 gi|288349665|gb|EFC83899.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ +G    G DVF+H SA+   G   L EGQ V +   Q   
Sbjct: 1  MAQGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIVMDGYKALEEGQRVEFQVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+ +++V
Sbjct: 58 G--PQADAVRVV 67


>gi|188025849|ref|ZP_02960049.2| hypothetical protein PROSTU_01951 [Providencia stuartii ATCC
          25827]
 gi|188020731|gb|EDU58771.1| hypothetical protein PROSTU_01951 [Providencia stuartii ATCC
          25827]
          Length = 85

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+  AG   L EGQ V +   +N A G
Sbjct: 21 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGAGFKTLAEGQQVEFTI-ENGAKG 76

Query: 64 KYSAENLKL 72
            +A    +
Sbjct: 77 PAAANVTAI 85


>gi|262273606|ref|ZP_06051420.1| cold shock protein CspA [Grimontia hollisae CIP 101886]
 gi|262273607|ref|ZP_06051421.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
 gi|262222584|gb|EEY73895.1| cold shock protein CspA [Grimontia hollisae CIP 101886]
 gi|262222585|gb|EEY73896.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
          Length = 70

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V++D  Q    G
Sbjct: 6  TGLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASDGFKTLAEGQKVSFDVEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PQAANVVAL 70


>gi|212639235|ref|YP_002315755.1| cold shock protein, CspA family [Anoxybacillus flavithermus WK1]
 gi|212560715|gb|ACJ33770.1| Cold shock protein, CspA family [Anoxybacillus flavithermus WK1]
          Length = 81

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFI     T+ G DVF+H +A+   G   L EG+ VT+D V N  
Sbjct: 16 MNTGKVKWFNAEKGFGFIE----TDGGTDVFVHFTAIQGTGFKTLEEGEKVTFDIV-NGN 70

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 71 RGPQAANVQK 80


>gi|134094972|ref|YP_001100047.1| RNA chaperone [Herminiimonas arsenicoxydans]
 gi|152983242|ref|YP_001353208.1| cold shock transcription regulator protein [Janthinobacterium sp.
          Marseille]
 gi|329903345|ref|ZP_08273438.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480]
 gi|133738875|emb|CAL61922.1| Cold shock-like protein cspE (CSP-E) [Herminiimonas
          arsenicoxydans]
 gi|151283319|gb|ABR91729.1| cold shock transcription regulator protein [Janthinobacterium sp.
          Marseille]
 gi|327548423|gb|EGF33101.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   E G+D+F H SA+ S+G  +L E Q V+++      
Sbjct: 1  MATGIVKWFNDSKGFGFITPD---EGGEDLFAHFSAIQSSGFKSLQENQRVSFEVT-AGP 56

Query: 62 NGKYSAENLKLV 73
           GK  A N++ +
Sbjct: 57 KGKQ-ASNIQPI 67


>gi|17547185|ref|NP_520587.1| cold shock-like transcription regulator protein [Ralstonia
          solanacearum GMI1000]
 gi|17429487|emb|CAD16173.1| probable cold shock-like cspd transcription regulator protein
          [Ralstonia solanacearum GMI1000]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+   E G+++F H SA+   G   L EGQ V +D  Q   
Sbjct: 1  MANGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQATNIQ 65


>gi|329850898|ref|ZP_08265743.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
 gi|328841213|gb|EGF90784.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G DVF+H +AV  AGL  L +GQ +TY+      
Sbjct: 1  MATGTVKWFNSTKGFGFIQPDA---GGSDVFVHITAVERAGLRGLNDGQKITYELATE-- 55

Query: 62 NGKYSAENLK 71
           GK SA NL+
Sbjct: 56 KGKTSAVNLQ 65


>gi|319939553|ref|ZP_08013913.1| cold shock protein [Streptococcus anginosus 1_2_62CV]
 gi|319811539|gb|EFW07834.1| cold shock protein [Streptococcus anginosus 1_2_62CV]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ E    +G DVF H SA+ S G  +L EG+ VT+D  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFISQE----NGPDVFAHFSAIQSDGFKSLNEGEKVTFDIEEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--LQAINITKL 66


>gi|313671996|ref|YP_004050107.1| cold-shock DNA-binding domain protein [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312938752|gb|ADR17944.1| cold-shock DNA-binding domain protein [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M + G++KW+N  KGYGFIT    + +G+DVF+H SA+   G  +L EG  V +D V+  
Sbjct: 1  MSNTGTVKWFNDTKGYGFIT----STTGEDVFVHYSAITMGGFKSLKEGDRVKFDIVKG- 55

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 56 PKGPQAANV 64


>gi|284007335|emb|CBA72699.1| cold shock protein CspE [Arsenophonus nasoniae]
          Length = 88

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITPEG    G DVF+H +A+   G   LT GQ V +D  +     
Sbjct: 24 TGTVKWFNETKGFGFITPEG---GGKDVFVHYTAIDVNGFKTLTVGQKVEFDIQEGSKG- 79

Query: 64 KYSAENLKLV 73
            +A N+ ++
Sbjct: 80 -SAANNVTII 88


>gi|145299398|ref|YP_001142239.1| cold shock domain-containing protein CspD [Aeromonas salmonicida
          subsp. salmonicida A449]
 gi|330829988|ref|YP_004392940.1| Cold shock-like protein cspD [Aeromonas veronii B565]
 gi|142852170|gb|ABO90491.1| cold shock domain protein CspD [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|328805124|gb|AEB50323.1| Cold shock-like protein cspD [Aeromonas veronii B565]
          Length = 72

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V ++  Q   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMEGYKTLKAGQAVNFELQQG-P 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G +++    +VP  + 
Sbjct: 57 KGNHASV---IVPNEAQ 70


>gi|56698445|ref|YP_168819.1| cold shock protein CspA [Ruegeria pomeroyi DSS-3]
 gi|56680182|gb|AAV96848.1| cold shock protein CspA [Ruegeria pomeroyi DSS-3]
          Length = 68

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   +   DVF+H SA+  +G+  L +GQ VT+D  ++  
Sbjct: 1  MANGTVKWFNSQKGFGFIAPE---QGSKDVFVHISALERSGIQKLDDGQAVTFDI-ESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESAINLAL 67


>gi|69244300|ref|ZP_00602768.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
 gi|227551568|ref|ZP_03981617.1| cold-shock protein [Enterococcus faecium TX1330]
 gi|257878362|ref|ZP_05658015.1| cold-shock protein [Enterococcus faecium 1,230,933]
 gi|257887333|ref|ZP_05666986.1| cold-shock protein [Enterococcus faecium 1,141,733]
 gi|257889438|ref|ZP_05669091.1| cold-shock protein [Enterococcus faecium 1,231,410]
 gi|257892619|ref|ZP_05672272.1| cold-shock protein [Enterococcus faecium 1,231,408]
 gi|257895824|ref|ZP_05675477.1| cold-shock protein [Enterococcus faecium Com12]
 gi|257898451|ref|ZP_05678104.1| cold-shock protein [Enterococcus faecium Com15]
 gi|258616116|ref|ZP_05713886.1| cold shock protein CspA family protein [Enterococcus faecium DO]
 gi|260559947|ref|ZP_05832126.1| cold-shock protein [Enterococcus faecium C68]
 gi|293377552|ref|ZP_06623744.1| cold-shock DNA-binding domain protein [Enterococcus faecium
          PC4.1]
 gi|293553922|ref|ZP_06674527.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293560530|ref|ZP_06677020.1| cold-shock protein [Enterococcus faecium E1162]
 gi|293568855|ref|ZP_06680168.1| cold-shock protein [Enterococcus faecium E1071]
 gi|293572948|ref|ZP_06683895.1| cold-shock protein [Enterococcus faecium E980]
 gi|294615473|ref|ZP_06695341.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294618750|ref|ZP_06698279.1| cold shock protein [Enterococcus faecium E1679]
 gi|294621893|ref|ZP_06701048.1| cold shock protein [Enterococcus faecium U0317]
 gi|314940515|ref|ZP_07847657.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|314943280|ref|ZP_07850062.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|314948444|ref|ZP_07851829.1| major cold shock protein CspA [Enterococcus faecium TX0082]
 gi|314952991|ref|ZP_07855953.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|314994198|ref|ZP_07859503.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|314997118|ref|ZP_07862106.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|68196486|gb|EAN10913.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
 gi|227179245|gb|EEI60217.1| cold-shock protein [Enterococcus faecium TX1330]
 gi|257812590|gb|EEV41348.1| cold-shock protein [Enterococcus faecium 1,230,933]
 gi|257823387|gb|EEV50319.1| cold-shock protein [Enterococcus faecium 1,141,733]
 gi|257825798|gb|EEV52424.1| cold-shock protein [Enterococcus faecium 1,231,410]
 gi|257828998|gb|EEV55605.1| cold-shock protein [Enterococcus faecium 1,231,408]
 gi|257832389|gb|EEV58810.1| cold-shock protein [Enterococcus faecium Com12]
 gi|257836363|gb|EEV61437.1| cold-shock protein [Enterococcus faecium Com15]
 gi|260074171|gb|EEW62494.1| cold-shock protein [Enterococcus faecium C68]
 gi|291588288|gb|EFF20123.1| cold-shock protein [Enterococcus faecium E1071]
 gi|291591676|gb|EFF23317.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291595003|gb|EFF26351.1| cold shock protein [Enterococcus faecium E1679]
 gi|291598552|gb|EFF29614.1| cold shock protein [Enterococcus faecium U0317]
 gi|291601910|gb|EFF32157.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291605497|gb|EFF34941.1| cold-shock protein [Enterococcus faecium E1162]
 gi|291606989|gb|EFF36364.1| cold-shock protein [Enterococcus faecium E980]
 gi|292643809|gb|EFF61927.1| cold-shock DNA-binding domain protein [Enterococcus faecium
          PC4.1]
 gi|313588788|gb|EFR67633.1| major cold shock protein CspA [Enterococcus faecium TX0133a01]
 gi|313591379|gb|EFR70224.1| major cold shock protein CspA [Enterococcus faecium TX0133B]
 gi|313594927|gb|EFR73772.1| major cold shock protein CspA [Enterococcus faecium TX0133A]
 gi|313598008|gb|EFR76853.1| major cold shock protein CspA [Enterococcus faecium TX0133C]
 gi|313640286|gb|EFS04867.1| major cold shock protein CspA [Enterococcus faecium TX0133a04]
 gi|313645102|gb|EFS09682.1| major cold shock protein CspA [Enterococcus faecium TX0082]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+   G   L EGQ V+YD V++  
Sbjct: 1  MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQGDGFKTLEEGQAVSYD-VEDGQ 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGPQATNIVK 65


>gi|329117514|ref|ZP_08246231.1| major cold shock protein CspA [Streptococcus parauberis NCFD
          2020]
 gi|326907919|gb|EGE54833.1| major cold shock protein CspA [Streptococcus parauberis NCFD
          2020]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFIT E    +G DVF H S + S G  +L EGQ V +D   +  
Sbjct: 1  MAQGTVKWFNAEKGFGFITQE----NGSDVFAHFSEIQSDGYKSLDEGQKVEFDVT-DGQ 55

Query: 62 NGKYSAENLKL 72
           G  ++   KL
Sbjct: 56 RGPQASNITKL 66


>gi|315498412|ref|YP_004087216.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
 gi|315416424|gb|ADU13065.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    E G+DVF+H +AV  AGL  L +GQ ++Y+      
Sbjct: 1  MAEGTVKWFNATKGFGFIQP---AEGGNDVFVHITAVQRAGLQGLADGQKLSYELQTE-- 55

Query: 62 NGKYSAENLKLV 73
           GK +A NL+L+
Sbjct: 56 RGKTAAVNLQLL 67


>gi|89073826|ref|ZP_01160333.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|90581460|ref|ZP_01237254.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|89050361|gb|EAR55862.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|90437321|gb|EAS62518.1| putative Cold shock-like protein [Vibrio angustum S14]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q   
Sbjct: 1  MSTGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ- 56

Query: 62 NGKYSAENLKL 72
           G  +A  + L
Sbjct: 57 KGLQAANVVAL 67


>gi|295096413|emb|CBK85503.1| cold-shock DNA-binding protein family [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 73

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|227549696|ref|ZP_03979745.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078192|gb|EEI16155.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+   +   DVF+H S +   G   L E Q V ++      
Sbjct: 1  MATGTVKWFNAEKGFGFIAPD---DGSADVFVHYSEIQGNGFRTLEENQQVEFEIGDGAK 57

Query: 62 NGKYSAE 68
            +  A 
Sbjct: 58 GPQAQAV 64


>gi|172057694|ref|YP_001814154.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|172057696|ref|YP_001814156.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|171990215|gb|ACB61137.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
          255-15]
 gi|171990217|gb|ACB61139.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
          255-15]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  E    SGDDVF+H SA+ + G  +L EGQ V+++ V+   
Sbjct: 1  MEQGKVKWFNAEKGFGFIERE----SGDDVFVHFSAIQTDGFKSLDEGQEVSFE-VEEGQ 55

Query: 62 NGKYSAENLKL 72
           G  +    KL
Sbjct: 56 RGPQATNVTKL 66


>gi|326384649|ref|ZP_08206327.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
          NRRL B-59395]
 gi|326196616|gb|EGD53812.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
          NRRL B-59395]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+     G+DVF+H SA+A +G  NL E Q V +D  Q   
Sbjct: 1  MTQGTVKWFNGEKGFGFIAPD---NGGEDVFVHFSAIAGSGFRNLEEAQRVEFDLEQGAK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--PQATNVTAI 67


>gi|261339213|ref|ZP_05967071.1| hypothetical protein ENTCAN_05441 [Enterobacter cancerogenus ATCC
          35316]
 gi|288319062|gb|EFC58000.1| cold shock domain protein CspD [Enterobacter cancerogenus ATCC
          35316]
          Length = 73

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|126650270|ref|ZP_01722498.1| cold shock protein [Bacillus sp. B14905]
 gi|126592920|gb|EAZ86902.1| cold shock protein [Bacillus sp. B14905]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G+DVF+H SA+ + G   L EGQ V +   + + 
Sbjct: 1  MTQGTVKWFNAEKGFGFIAVE----GGNDVFVHFSAIQTDGFKTLEEGQKVEFGVEEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +   +K+
Sbjct: 56 RGPQATNVVKI 66


>gi|313906442|ref|ZP_07839778.1| cold-shock DNA-binding domain protein [Eubacterium cellulosolvens
          6]
 gi|313468709|gb|EFR64075.1| cold-shock DNA-binding domain protein [Eubacterium cellulosolvens
          6]
          Length = 66

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N DKGYGFIT     E G DVF+H SA+   G  +L EGQ V+Y+ V+  A
Sbjct: 1  MNKGTVKWFNADKGYGFIT----GEDGKDVFVHFSAIQGEGFKSLDEGQSVSYELVEG-A 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 KGMQAANV 63


>gi|13476765|ref|NP_108334.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|319784316|ref|YP_004143792.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|14027526|dbj|BAB53795.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|317170204|gb|ADV13742.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 69

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ ++ EGQ + Y+ V+++ 
Sbjct: 1  MSTGTVKWFNATKGFGFIQPD---DGSADVFVHISAVERAGMRDIVEGQKLGYEMVRDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA+ LK
Sbjct: 58 SGKMSADQLK 67


>gi|296446943|ref|ZP_06888878.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
 gi|296255510|gb|EFH02602.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
          OB3b]
          Length = 70

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N  KG+GFI P      G DVF+H +AV  AGL  L EGQ ++Y+ V +  
Sbjct: 1  MNTGVVKWFNAHKGFGFIQP---AAGGADVFVHITAVERAGLRGLAEGQKISYEIVVDSR 57

Query: 62 NGKYSAENLKL 72
          +GK SA+ +++
Sbjct: 58 SGKSSADRIEV 68


>gi|302544963|ref|ZP_07297305.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302462581|gb|EFL25674.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
          Length = 68

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  EG    G DVF+H S++   G  +L + Q V +  VQ   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAQEG---GGPDVFVHYSSINGNGYRSLADDQRVEFQIVQGRK 57

Query: 62 NGKYSAENLKLV 73
               AE ++++
Sbjct: 58 G--PQAEEVRVL 67


>gi|302877658|ref|YP_003846222.1| cold-shock DNA-binding domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302580447|gb|ADL54458.1| cold-shock DNA-binding domain protein [Gallionella
          capsiferriformans ES-2]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+TP+   +  +D+F H SA+   G   L EGQ V+++  Q   
Sbjct: 1  MATGTVKWFNDAKGFGFVTPD---DGSEDLFAHFSAINMNGFKTLQEGQKVSFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|56477977|ref|YP_159566.1| putative cold-shock protein [Aromatoleum aromaticum EbN1]
 gi|56314020|emb|CAI08665.1| putative cold-shock protein [Aromatoleum aromaticum EbN1]
          Length = 67

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  +D+F H SA+   G   L EG+ V+++  Q   
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMNGFKTLKEGEKVSFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|307544234|ref|YP_003896713.1| cold shock protein CspA [Halomonas elongata DSM 2581]
 gi|307216258|emb|CBV41528.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas
          elongata DSM 2581]
          Length = 68

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P    + GDDVF H S + + G  +L EGQ V++D  Q   
Sbjct: 1  MTTGTVKWFNDSKGFGFISP---ADGGDDVFAHFSEIQAEGFKSLQEGQSVSFDVTQGKK 57

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 58 G--LQASNIKAL 67


>gi|294678414|ref|YP_003579029.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003]
 gi|294477234|gb|ADE86622.1| cold shock protein CspA-3 [Rhodobacter capsulatus SB 1003]
          Length = 68

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE  T    DVF+H +A+  AGL  L +GQ V++D  + D 
Sbjct: 1  MANGTVKWFNAIKGFGFIAPESGT---KDVFVHVTALERAGLRGLNDGQAVSFDL-ERDR 56

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67


>gi|197106500|ref|YP_002131877.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
 gi|196479920|gb|ACG79448.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
          HLK1]
          Length = 69

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP KG+GFI P+     G DVF+H SAV  + L +L+EGQ V ++  ++  
Sbjct: 1  MTIGTVKWFNPAKGFGFIQPD---NGGPDVFVHISAVERSTLGSLSEGQKVGFELERDQR 57

Query: 62 NGKYSAENLK 71
          +GK SA  L+
Sbjct: 58 SGKTSAGQLQ 67


>gi|188586205|ref|YP_001917750.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179350892|gb|ACB85162.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 66

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N DKGYGFI  EG     DDVF+H SA+   G   L EGQ V ++ V+   
Sbjct: 1  MTKGIVKWFNSDKGYGFIQVEGE----DDVFVHFSAIQEEGFKTLDEGQQVEFNVVEGQ- 55

Query: 62 NGKYSAENLKL 72
           G  +AE +KL
Sbjct: 56 RGPQAAEVVKL 66


>gi|90409803|ref|ZP_01217820.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90329156|gb|EAS45413.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
          Length = 70

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 6  TGLVKWFNEDKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PQAANVVAL 70


>gi|325529192|gb|EGD06159.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. TJI49]
          Length = 67

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S +   G   L EGQ V+Y+  +   
Sbjct: 1  MDTGTVKWFNDTKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYETKRGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--LQASNITPL 67


>gi|292487806|ref|YP_003530681.1| cold shock-like protein CspD [Erwinia amylovora CFBP1430]
 gi|292899035|ref|YP_003538404.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
 gi|291198883|emb|CBJ45993.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
 gi|291553228|emb|CBA20273.1| Cold shock-like protein cspD (CPS-D) [Erwinia amylovora CFBP1430]
 gi|312171924|emb|CBX80181.1| Cold shock-like protein cspD (CPS-D) [Erwinia amylovora ATCC
          BAA-2158]
          Length = 75

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G    GDD+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  MMTGTVKWFNNAKGFGFICPAG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|289523010|ref|ZP_06439864.1| putative cold shock protein [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
 gi|289503553|gb|EFD24717.1| putative cold shock protein [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
          Length = 65

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFIT    +E G DVF+H SA+   G   L EG  V ++ V+  A G 
Sbjct: 3  GTVKWFNATKGYGFIT----SEDGKDVFVHYSAIDMKGFKTLEEGDKVEFEVVEG-AKGP 57

Query: 65 YSAENLKL 72
           +A   ++
Sbjct: 58 QAAHVKRV 65


>gi|187477996|ref|YP_786020.1| cold shock-like protein [Bordetella avium 197N]
 gi|115422582|emb|CAJ49107.1| cold shock-like protein [Bordetella avium 197N]
          Length = 68

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI P+   + G D+F H S + S G  +L E Q V+++  +   
Sbjct: 1  MATGIVKWFNAEKGYGFILPD---DGGKDLFAHYSEIRSEGYKSLQENQRVSFEIGEGPK 57

Query: 62 NGKYSAENLKLV 73
              SA+++K++
Sbjct: 58 G--PSAKDIKVI 67


>gi|258541245|ref|YP_003186678.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-01]
 gi|329114852|ref|ZP_08243608.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
 gi|256632323|dbj|BAH98298.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-01]
 gi|256635380|dbj|BAI01349.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-03]
 gi|256638435|dbj|BAI04397.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-07]
 gi|256641489|dbj|BAI07444.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-22]
 gi|256644544|dbj|BAI10492.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-26]
 gi|256647599|dbj|BAI13540.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-32]
 gi|256650652|dbj|BAI16586.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653643|dbj|BAI19570.1| transcriptional regulator cold shock protein DNA-binding protein
          [Acetobacter pasteurianus IFO 3283-12]
 gi|326695749|gb|EGE47434.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001]
          Length = 68

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP KG+GFI P+     G D F+H S +  AG+  LTEGQ V+Y+  +   
Sbjct: 1  MATGTVKWFNPTKGFGFIQPD---NGGQDAFVHISELERAGMHTLTEGQQVSYEL-EAGR 56

Query: 62 NGKYSAENLKLV 73
          NGK SA ++K +
Sbjct: 57 NGKTSAVSIKAI 68


>gi|218900031|ref|YP_002448442.1| cold shock protein CspD [Bacillus cereus G9842]
 gi|228903378|ref|ZP_04067509.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|228910715|ref|ZP_04074526.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|228942044|ref|ZP_04104587.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228967983|ref|ZP_04128992.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228974975|ref|ZP_04135536.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228981568|ref|ZP_04141865.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|229020116|ref|ZP_04176895.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|229026344|ref|ZP_04182702.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|229175579|ref|ZP_04303089.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|218540595|gb|ACK92989.1| cold shock protein CspD [Bacillus cereus G9842]
 gi|228607975|gb|EEK65287.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|228734944|gb|EEL85581.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|228741182|gb|EEL91401.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|228778247|gb|EEM26517.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|228784828|gb|EEM32846.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228791707|gb|EEM39300.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228817713|gb|EEM63795.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228848983|gb|EEM93826.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|228856339|gb|EEN00868.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|326942646|gb|AEA18542.1| cold shock protein [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 66

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ V+++ V+ + 
Sbjct: 1  MQTGKVKWFNGEKGFGFIEVE----GGEDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|123441858|ref|YP_001005841.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|332162200|ref|YP_004298777.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|122088819|emb|CAL11625.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|318606256|emb|CBY27754.1| cold shock proteins [Yersinia enterocolitica subsp. palearctica
          Y11]
 gi|325666430|gb|ADZ43074.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330862901|emb|CBX73038.1| cold shock-like protein cspE [Yersinia enterocolitica W22703]
          Length = 69

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y   Q+   
Sbjct: 4  KTGQVKWFNEAKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPR 59

Query: 63 GKYSAENLKL 72
          G  +A  + L
Sbjct: 60 GPAAANVVAL 69


>gi|257867741|ref|ZP_05647394.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC30]
 gi|257869629|ref|ZP_05649282.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2]
 gi|257874069|ref|ZP_05653722.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC10]
 gi|257876646|ref|ZP_05656299.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC20]
 gi|325571055|ref|ZP_08146627.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
 gi|257801824|gb|EEV30727.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC30]
 gi|257803793|gb|EEV32615.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2]
 gi|257808233|gb|EEV37055.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC10]
 gi|257810812|gb|EEV39632.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC20]
 gi|325156140|gb|EGC68326.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
          Length = 66

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT     E+G+DVF+H SA+   G   L EGQ VT+D  ++  
Sbjct: 1  METGTVKWFNSDKGFGFIT----AENGNDVFVHFSAIQGEGFKTLEEGQAVTFDI-EDGQ 55

Query: 62 NGKYSAEN 69
           G  +   
Sbjct: 56 RGPQATNV 63


>gi|221369644|ref|YP_002520740.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131]
 gi|221162696|gb|ACM03667.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131]
          Length = 77

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G      DVF+H +A+  AG+  L +GQ V++D  + D 
Sbjct: 10 MANGTVKWFNATKGFGFIAPAG---GSKDVFVHVTALERAGIRQLDDGQAVSFDL-ERDR 65

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 66 NGRESATNLVL 76


>gi|209520011|ref|ZP_03268789.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295676690|ref|YP_003605214.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|209499550|gb|EDZ99627.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295436533|gb|ADG15703.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
          Length = 67

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H S + + G  +L E Q V+++  Q   
Sbjct: 1  MPTGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRTEGFKSLQENQKVSFEIKQG-P 56

Query: 62 NGKYSAE 68
           GK +A+
Sbjct: 57 KGKQAAD 63


>gi|73918922|sp|Q5X9L4|CSPA_STRP6 RecName: Full=Major cold shock protein
          Length = 67

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI    STE+G DVF H SA+ ++G   L EGQ V +D  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTSGFKTLEEGQKVAFDVEEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--PQAVNITKL 66


>gi|170769983|ref|ZP_02904436.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
 gi|170121167|gb|EDS90098.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
          Length = 70

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P   ++ G DVF+H +A+ S     L E Q V +   Q    G
Sbjct: 6  TGLVKWFNADKGFGFISP---SDGGKDVFVHFTAIQSNEFRTLNENQKVEFSIEQG-PRG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVVTL 70


>gi|153006879|ref|YP_001381204.1| cold-shock DNA-binding domain-containing protein
          [Anaeromyxobacter sp. Fw109-5]
 gi|152030452|gb|ABS28220.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
          sp. Fw109-5]
          Length = 67

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +     G+DVF H +A+ + G   L EGQ V +D  +   
Sbjct: 1  MSTGTVKWFNDAKGFGFITQDS---GGEDVFCHHTAINAQGFRTLAEGQKVEFDVTKGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--LQAANVRPL 67


>gi|77465631|ref|YP_355134.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1]
 gi|77390049|gb|ABA81233.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1]
          Length = 77

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G      DVF+H +A+  AG+  L +GQ V++D  + D 
Sbjct: 10 MANGTVKWFNATKGFGFIAPTG---GSKDVFVHVTALERAGIRQLDDGQAVSFDL-ERDR 65

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 66 NGRESATNLVL 76


>gi|238749763|ref|ZP_04611268.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380]
 gi|238712418|gb|EEQ04631.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380]
          Length = 69

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y   Q+   
Sbjct: 4  KTGQVKWFNEAKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPR 59

Query: 63 GKYSAENLKL 72
          G  +A  + L
Sbjct: 60 GPAAANVIAL 69


>gi|294636954|ref|ZP_06715278.1| cold shock domain protein CspD [Edwardsiella tarda ATCC 23685]
 gi|291089847|gb|EFE22408.1| cold shock domain protein CspD [Edwardsiella tarda ATCC 23685]
          Length = 73

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G    GDD+F H +++   G   L  GQ V ++      
Sbjct: 1  METGTVKWFNNAKGFGFICPAG---GGDDIFAHYTSIQMEGYRTLKAGQRVQFELHIGPK 57

Query: 62 NGKYSAENLKLVPKS 76
               A+ +  +P  
Sbjct: 58 G--NHADTIIPLPNE 70


>gi|227499116|ref|ZP_03929251.1| cold-shock DNA-binding protein [Acidaminococcus sp. D21]
 gi|284047580|ref|YP_003397919.1| cold-shock DNA-binding domain protein [Acidaminococcus fermentans
          DSM 20731]
 gi|226904563|gb|EEH90481.1| cold-shock DNA-binding protein [Acidaminococcus sp. D21]
 gi|283951801|gb|ADB46604.1| cold-shock DNA-binding domain protein [Acidaminococcus fermentans
          DSM 20731]
          Length = 65

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KGYGFI  E     G DVF+H SA+   G   L EGQ V +D V+ +  G
Sbjct: 2  TGKVKWFNAEKGYGFIERE----DGGDVFVHFSAIQGEGFKTLEEGQAVEFDVVEGN-RG 56

Query: 64 KYSAENLKL 72
          + +A  +KL
Sbjct: 57 EQAANVVKL 65


>gi|157374396|ref|YP_001472996.1| putative cold shock-like protein [Shewanella sediminis HAW-EB3]
 gi|157316770|gb|ABV35868.1| putative Cold shock-like protein [Shewanella sediminis HAW-EB3]
          Length = 70

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI+ E     GDDVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 6  TGTVKWFNEEKGFGFISQE---NGGDDVFVHFRAIASDGFKTLAEGQKVSFEVEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 62 LQAANVVAI 70


>gi|308071085|ref|YP_003872690.1| Cold shock-like protein cspC [Paenibacillus polymyxa E681]
 gi|305860364|gb|ADM72152.1| Cold shock-like protein cspC [Paenibacillus polymyxa E681]
          Length = 65

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     T  G DVF+H SA+ + G   L EGQ V +D V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFIE----TSDGGDVFVHFSAIQTEGFKTLEEGQDVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 57 PQAANVTKL 65


>gi|226322941|ref|ZP_03798459.1| hypothetical protein COPCOM_00713 [Coprococcus comes ATCC 27758]
 gi|225208727|gb|EEG91081.1| hypothetical protein COPCOM_00713 [Coprococcus comes ATCC 27758]
          Length = 67

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGFIT E +   G+DVF+H S +A  G  +L EGQ VT+D  + + 
Sbjct: 1  MNKGTVKWFNAQKGYGFITNEST---GEDVFVHFSGIAGEGYKSLEEGQNVTFDITEGNR 57

Query: 62 NGKYSAENLKL 72
               A N+ +
Sbjct: 58 G--LQAVNVTV 66


>gi|146283150|ref|YP_001173303.1| cold-shock DNA-binding protein [Pseudomonas stutzeri A1501]
 gi|145571355|gb|ABP80461.1| cold-shock DNA-binding protein [Pseudomonas stutzeri A1501]
          Length = 243

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++KW+N  KG+GFI+ +    SGDDVF+H  A+   G   L EGQ V +  +  D 
Sbjct: 174 REAGTVKWFNTSKGFGFISRD----SGDDVFVHFRAIRGEGHRILVEGQRVEFTIMMRDK 229

Query: 62  NGKYSAENLKLVP 74
                AE++  V 
Sbjct: 230 G--LQAEDVVPVE 240


>gi|84514336|ref|ZP_01001700.1| cold shock protein CspA [Loktanella vestfoldensis SKA53]
 gi|84511387|gb|EAQ07840.1| cold shock protein CspA [Loktanella vestfoldensis SKA53]
          Length = 68

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      DVF+H SAV  +GL  L + Q VT+D  ++  
Sbjct: 1  MANGTVKWFNATKGFGFIAPEG---GSKDVFVHISAVERSGLTGLKDDQKVTFDI-ESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESAINLAL 67


>gi|119384797|ref|YP_915853.1| cold-shock DNA-binding domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119374564|gb|ABL70157.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
          PD1222]
          Length = 68

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE       D+F+H SAV  AG+  L +GQ V++D  + D 
Sbjct: 1  MANGTVKWFNSAKGFGFIQPES---GSKDIFVHISAVERAGIHQLNDGQAVSFDL-ERDR 56

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 57 NGRDSATNLVL 67


>gi|254438790|ref|ZP_05052284.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter
          antarcticus 307]
 gi|198254236|gb|EDY78550.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter
          antarcticus 307]
          Length = 68

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G DVF+H SAV  +GL  L + Q VT+D V+   
Sbjct: 1  MANGTVKWFNTTKGFGFIAPET---GGKDVFVHISAVERSGLTGLADDQKVTFD-VEAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESAVNLAL 67


>gi|146280255|ref|YP_001170411.1| hypothetical protein Rsph17025_4258 [Rhodobacter sphaeroides ATCC
          17025]
 gi|145558496|gb|ABP73106.1| hypothetical protein Rsph17025_4258 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 68

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G      DVF+H +A+  AG+  L +GQ VT+D  + D 
Sbjct: 1  MANGTVKWFNATKGFGFIAPTG---GSKDVFVHVTALERAGIRQLNDGQTVTFDL-ERDR 56

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67


>gi|320540138|ref|ZP_08039793.1| putative cold-shock DNA-binding domain-containing protein
          [Serratia symbiotica str. Tucson]
 gi|320029804|gb|EFW11828.1| putative cold-shock DNA-binding domain-containing protein
          [Serratia symbiotica str. Tucson]
          Length = 69

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITPE   +   DVF+H SA+AS G   L EGQ V ++   N A G
Sbjct: 5  KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQHVEFEIT-NGAKG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PSAANVIAI 69


>gi|310644316|ref|YP_003949075.1| cold shock-like protein cspc [Paenibacillus polymyxa SC2]
 gi|309249267|gb|ADO58834.1| Cold shock-like protein cspC [Paenibacillus polymyxa SC2]
          Length = 65

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI     T  G DVF+H SA+ + G   L EGQ V +D V+  A G
Sbjct: 2  QGKVKWFNAEKGYGFIE----TADGGDVFVHFSAIQTEGFKTLEEGQDVEFDIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 57 PQAANVTKL 65


>gi|304311205|ref|YP_003810803.1| Cold-shock protein CspD [gamma proteobacterium HdN1]
 gi|301796938|emb|CBL45151.1| Cold-shock protein CspD [gamma proteobacterium HdN1]
          Length = 97

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI P+G    GDD+F+H S +   G  +L  GQ+VTY+  +   
Sbjct: 1  MATGKVKWFNNAKGYGFIRPDGE---GDDLFVHYSYIHMDGYKSLKAGQVVTYEIREAPK 57

Query: 62 NGKYSAENLKLVPKSSN 78
               A N+ LV  + +
Sbjct: 58 G--LHAVNIGLVEHAHD 72


>gi|184201878|ref|YP_001856085.1| cold shock protein [Kocuria rhizophila DC2201]
 gi|183582108|dbj|BAG30579.1| cold shock protein [Kocuria rhizophila DC2201]
          Length = 68

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFI PE   +  DDVF H S + S G  +L EG  V ++  Q D 
Sbjct: 1  MTTGTVKWFNADKGFGFIAPE---DGSDDVFAHFSGINSGGFRSLNEGDKVEFEVQQGDR 57

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 58 G--LQATNISVI 67


>gi|225850576|ref|YP_002730810.1| hypothetical protein PERMA_1024 [Persephonella marina EX-H1]
 gi|225644787|gb|ACO02973.1| conserved domain protein [Persephonella marina EX-H1]
          Length = 68

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KGYGFIT +   +   DVF+H SA+A  G   L EGQ V +D VQ D
Sbjct: 1  MRLTGTVKWFNSKKGYGFITRD---DGQGDVFVHFSAIAENGFKTLEEGQKVEFDVVQED 57

Query: 61 ANGKYSAENLKL 72
            G+ +   +K+
Sbjct: 58 -KGQKAQNVVKI 68


>gi|29377389|ref|NP_816543.1| cold-shock domain-contain protein [Enterococcus faecalis V583]
 gi|227518209|ref|ZP_03948258.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis TX0104]
 gi|227554372|ref|ZP_03984419.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis HH22]
 gi|229547598|ref|ZP_04436323.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis TX1322]
 gi|229548194|ref|ZP_04436919.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis ATCC 29200]
 gi|255970846|ref|ZP_05421432.1| cold-shock protein [Enterococcus faecalis T1]
 gi|255974421|ref|ZP_05425007.1| cold-shock domain-containing protein [Enterococcus faecalis T2]
 gi|256618291|ref|ZP_05475137.1| cold-shock DNA-binding protein [Enterococcus faecalis ATCC 4200]
 gi|256761221|ref|ZP_05501801.1| cold-shock DNA-binding protein family [Enterococcus faecalis T3]
 gi|256852484|ref|ZP_05557860.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
 gi|256958160|ref|ZP_05562331.1| cold-shock DNA-binding protein [Enterococcus faecalis DS5]
 gi|256960306|ref|ZP_05564477.1| cold-shock DNA-binding protein [Enterococcus faecalis Merz96]
 gi|256962742|ref|ZP_05566913.1| cold-shock DNA-binding protein [Enterococcus faecalis HIP11704]
 gi|257077433|ref|ZP_05571794.1| cold-shock DNA-binding protein [Enterococcus faecalis JH1]
 gi|257080702|ref|ZP_05575063.1| cold-shock DNA-binding family protein [Enterococcus faecalis
          E1Sol]
 gi|257083376|ref|ZP_05577737.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|257088066|ref|ZP_05582427.1| cold-shock DNA-binding protein family [Enterococcus faecalis D6]
 gi|257091145|ref|ZP_05585506.1| cold-shock DNA-binding protein [Enterococcus faecalis CH188]
 gi|257417092|ref|ZP_05594086.1| cold-shock DNA-binding protein [Enterococcus faecalis AR01/DG]
 gi|257417806|ref|ZP_05594800.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257420576|ref|ZP_05597566.1| cold shock protein [Enterococcus faecalis X98]
 gi|293382174|ref|ZP_06628117.1| conserved domain protein [Enterococcus faecalis R712]
 gi|293388515|ref|ZP_06633019.1| conserved domain protein [Enterococcus faecalis S613]
 gi|294779646|ref|ZP_06745037.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          PC1.1]
 gi|300860161|ref|ZP_07106248.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
 gi|307268850|ref|ZP_07550217.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|307272662|ref|ZP_07553910.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|307275091|ref|ZP_07556245.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|307278556|ref|ZP_07559628.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
 gi|307287380|ref|ZP_07567439.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
 gi|307290818|ref|ZP_07570712.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|312900401|ref|ZP_07759711.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
 gi|312902908|ref|ZP_07762105.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|312905731|ref|ZP_07764753.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
 gi|312909074|ref|ZP_07767934.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
 gi|312952213|ref|ZP_07771091.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|29344856|gb|AAO82613.1| cold-shock domain family protein [Enterococcus faecalis V583]
 gi|227074365|gb|EEI12328.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis TX0104]
 gi|227176491|gb|EEI57463.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis HH22]
 gi|229306673|gb|EEN72669.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis ATCC 29200]
 gi|229307288|gb|EEN73275.1| CspA family cold shock transcriptional regulator [Enterococcus
          faecalis TX1322]
 gi|255961864|gb|EET94340.1| cold-shock protein [Enterococcus faecalis T1]
 gi|255967293|gb|EET97915.1| cold-shock domain-containing protein [Enterococcus faecalis T2]
 gi|256597818|gb|EEU16994.1| cold-shock DNA-binding protein [Enterococcus faecalis ATCC 4200]
 gi|256682472|gb|EEU22167.1| cold-shock DNA-binding protein family [Enterococcus faecalis T3]
 gi|256712338|gb|EEU27370.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
 gi|256948656|gb|EEU65288.1| cold-shock DNA-binding protein [Enterococcus faecalis DS5]
 gi|256950802|gb|EEU67434.1| cold-shock DNA-binding protein [Enterococcus faecalis Merz96]
 gi|256953238|gb|EEU69870.1| cold-shock DNA-binding protein [Enterococcus faecalis HIP11704]
 gi|256985463|gb|EEU72765.1| cold-shock DNA-binding protein [Enterococcus faecalis JH1]
 gi|256988732|gb|EEU76034.1| cold-shock DNA-binding family protein [Enterococcus faecalis
          E1Sol]
 gi|256991406|gb|EEU78708.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|256996096|gb|EEU83398.1| cold-shock DNA-binding protein family [Enterococcus faecalis D6]
 gi|256999957|gb|EEU86477.1| cold-shock DNA-binding protein [Enterococcus faecalis CH188]
 gi|257158920|gb|EEU88880.1| cold-shock DNA-binding protein [Enterococcus faecalis ARO1/DG]
 gi|257159634|gb|EEU89594.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257162400|gb|EEU92360.1| cold shock protein [Enterococcus faecalis X98]
 gi|291080457|gb|EFE17821.1| conserved domain protein [Enterococcus faecalis R712]
 gi|291082119|gb|EFE19082.1| conserved domain protein [Enterococcus faecalis S613]
 gi|294453303|gb|EFG21714.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          PC1.1]
 gi|295114296|emb|CBL32933.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76]
 gi|300849200|gb|EFK76950.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
 gi|306498127|gb|EFM67650.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|306501553|gb|EFM70849.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
 gi|306504793|gb|EFM73991.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
 gi|306508209|gb|EFM77325.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|306510657|gb|EFM79679.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|306514854|gb|EFM83402.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|310628210|gb|EFQ11493.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
 gi|310629869|gb|EFQ13152.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|310633680|gb|EFQ16963.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|311290636|gb|EFQ69192.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
 gi|311292491|gb|EFQ71047.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
 gi|315028141|gb|EFT40073.1| major cold shock protein CspA [Enterococcus faecalis TX2137]
 gi|315030878|gb|EFT42810.1| major cold shock protein CspA [Enterococcus faecalis TX4000]
 gi|315032295|gb|EFT44227.1| major cold shock protein CspA [Enterococcus faecalis TX0017]
 gi|315036226|gb|EFT48158.1| major cold shock protein CspA [Enterococcus faecalis TX0027]
 gi|315145411|gb|EFT89427.1| major cold shock protein CspA [Enterococcus faecalis TX2141]
 gi|315148797|gb|EFT92813.1| major cold shock protein CspA [Enterococcus faecalis TX4244]
 gi|315151664|gb|EFT95680.1| major cold shock protein CspA [Enterococcus faecalis TX0012]
 gi|315154536|gb|EFT98552.1| major cold shock protein CspA [Enterococcus faecalis TX0031]
 gi|315156405|gb|EFU00422.1| major cold shock protein CspA [Enterococcus faecalis TX0043]
 gi|315160103|gb|EFU04120.1| major cold shock protein CspA [Enterococcus faecalis TX0312]
 gi|315163277|gb|EFU07294.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
 gi|315165918|gb|EFU09935.1| major cold shock protein CspA [Enterococcus faecalis TX1302]
 gi|315169325|gb|EFU13342.1| major cold shock protein CspA [Enterococcus faecalis TX1341]
 gi|315171820|gb|EFU15837.1| major cold shock protein CspA [Enterococcus faecalis TX1342]
 gi|315174742|gb|EFU18759.1| major cold shock protein CspA [Enterococcus faecalis TX1346]
 gi|315576277|gb|EFU88468.1| major cold shock protein CspA [Enterococcus faecalis TX0309B]
 gi|315578917|gb|EFU91108.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
 gi|315582769|gb|EFU94960.1| major cold shock protein CspA [Enterococcus faecalis TX0309A]
 gi|323478890|gb|ADX78329.1| cold shock protein cspC [Enterococcus faecalis 62]
 gi|327536078|gb|AEA94912.1| cold shock protein CspA [Enterococcus faecalis OG1RF]
 gi|329573421|gb|EGG55031.1| major cold shock protein CspA [Enterococcus faecalis TX1467]
          Length = 66

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ E     G DVF+H SA+   G   L EGQ VT+D   +D 
Sbjct: 1  MEQGTVKWFNAEKGFGFISRE----DGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSDR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQAVNVE 64


>gi|152975126|ref|YP_001374643.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152023878|gb|ABS21648.1| putative cold-shock DNA-binding domain protein [Bacillus
          cytotoxicus NVH 391-98]
          Length = 65

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  DDVF+H +A+   G  +L EGQ V++D V+ +  G
Sbjct: 2  QGKVKWFNNEKGFGFIE----IEGADDVFVHFTAIQGEGYKSLEEGQEVSFDIVEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|313884810|ref|ZP_07818562.1| major cold shock protein CspA [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312619501|gb|EFR30938.1| major cold shock protein CspA [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 66

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N DKG+GFI  +G     DDVF+H SA+ S G   L EGQ V++D  ++ A
Sbjct: 1  MAEGKVKWFNADKGFGFIERDGE----DDVFVHFSAIQSEGFKTLEEGQAVSFDI-EDGA 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 RGPQAANVEKI 66


>gi|257865157|ref|ZP_05644810.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC30]
 gi|257871481|ref|ZP_05651134.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC10]
 gi|257874772|ref|ZP_05654425.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC20]
 gi|325571583|ref|ZP_08147083.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
 gi|257799091|gb|EEV28143.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC30]
 gi|257805645|gb|EEV34467.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC10]
 gi|257808938|gb|EEV37758.1| cold-shock domain-contain protein [Enterococcus casseliflavus
          EC20]
 gi|325156059|gb|EGC68255.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
          Length = 66

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ E     G DVF+H SA+   G   L EGQ VT+D   +D 
Sbjct: 1  MEQGTVKWFNAEKGFGFISRE----DGTDVFVHFSAIQGEGFKTLEEGQAVTFDVEDSDR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--PQAVNV 63


>gi|271967211|ref|YP_003341407.1| cold-shock DNA-binding domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270510386|gb|ACZ88664.1| putative cold-shock DNA-binding domain protein [Streptosporangium
          roseum DSM 43021]
          Length = 67

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+   +   DVF+H SA+ S G   L E Q V++   Q   
Sbjct: 1  MSEGTVKWFNAEKGFGFIAPD---DGTADVFVHYSAINSGGYRTLEENQRVSFTTTQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+ ++++
Sbjct: 58 G--PQADQVQVI 67


>gi|126650361|ref|ZP_01722589.1| cold-shock domain family protein [Bacillus sp. B14905]
 gi|126593011|gb|EAZ86993.1| cold-shock domain family protein [Bacillus sp. B14905]
          Length = 67

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ VT+D  +   
Sbjct: 1  MEKGNVKWFNGEKGFGFIERE----GGDDVFVHFSAIQGEGYKTLKEGQAVTFDVEEGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQASNVR 64


>gi|148261824|ref|YP_001235951.1| cold-shock DNA-binding domain-containing protein [Acidiphilium
          cryptum JF-5]
 gi|326405328|ref|YP_004285410.1| cold shock protein [Acidiphilium multivorum AIU301]
 gi|146403505|gb|ABQ32032.1| cold-shock DNA-binding protein family [Acidiphilium cryptum JF-5]
 gi|325052190|dbj|BAJ82528.1| cold shock protein [Acidiphilium multivorum AIU301]
          Length = 68

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   +   DVF+H SAV  AGL  + EGQ + ++ V+   
Sbjct: 1  MSTGTVKWFNATKGYGFIQPD---DGSKDVFVHISAVERAGLGRIDEGQRLEFE-VRKGR 56

Query: 62 NGKYSAENLK 71
           GK SAENLK
Sbjct: 57 EGKMSAENLK 66


>gi|260102778|ref|ZP_05753015.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
 gi|260083418|gb|EEW67538.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
          Length = 67

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT    +    DVF+H SA+ + G  +L EGQ V+YD  Q  +
Sbjct: 1  MQTGTVKWFNADKGFGFIT---GSSDNKDVFVHFSAIKTDGFKSLEEGQKVSYDVEQG-S 56

Query: 62 NGKYSAENL 70
           G  +   +
Sbjct: 57 RGPQATNVV 65


>gi|291279814|ref|YP_003496649.1| cold shock protein [Deferribacter desulfuricans SSM1]
 gi|290754516|dbj|BAI80893.1| cold shock protein [Deferribacter desulfuricans SSM1]
          Length = 67

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KGYGFIT    +  G+DVF+H +A+   G  +L EG  V +D V+  
Sbjct: 1  MSKTGTVKWFNDSKGYGFIT----SSDGNDVFVHFTAIKMDGFKSLKEGDQVQFDIVEG- 55

Query: 61 ANGKYSAENLKL 72
            G  ++  +K+
Sbjct: 56 PKGPQASNVVKI 67


>gi|290475740|ref|YP_003468629.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Xenorhabdus bovienii
          SS-2004]
 gi|289175062|emb|CBJ81865.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Xenorhabdus bovienii
          SS-2004]
          Length = 69

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP    +   DVF+H SA+ + G   L+EGQ V ++  QN   G
Sbjct: 5  TGIVKWFNESKGFGFITP---ADGSKDVFVHFSAIMNDGFKTLSEGQQVEFEI-QNGPKG 60

Query: 64 KYSAENLKL 72
            +A    L
Sbjct: 61 PAAANVTAL 69


>gi|261346879|ref|ZP_05974523.1| conserved domain protein [Providencia rustigianii DSM 4541]
 gi|282565065|gb|EFB70600.1| conserved domain protein [Providencia rustigianii DSM 4541]
          Length = 70

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P   T+   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFNSDKGFGFISP---TDGSKDVFVHFSAIQSDNFRTLDEGQKVEFTI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 62 PAAANVVAI 70


>gi|294101499|ref|YP_003553357.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
 gi|293616479|gb|ADE56633.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense
          DSM 12261]
          Length = 66

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFIT     E G D F+H SA+   G   L EGQ V++D  ++  
Sbjct: 1  MTQGTVKWFNGTKGYGFIT----GEDGKDYFVHFSAIQVDGFKTLDEGQKVSFDI-ESGQ 55

Query: 62 NGKYSAENLKLV 73
           G  +A N+K +
Sbjct: 56 KGPQAA-NVKPL 66


>gi|73538959|ref|YP_299326.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72122296|gb|AAZ64482.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 67

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFITP+   + G D+F H S +  +G  +L EG  V +D  Q   
Sbjct: 1  MATGIVKWFNNEKGYGFITPD---DGGKDLFAHHSEIQGSGFKSLDEGAKVEFDVTQGQK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--LQASNIRKL 67


>gi|326693593|ref|ZP_08230598.1| cold shock protein [Leuconostoc argentinum KCTC 3773]
          Length = 66

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGF+T E    +G+DVF H SA+   G   L EGQ V ++   +D 
Sbjct: 1  MEKGTVKWFNGEKGYGFVTRE----NGEDVFAHFSAIQGDGFKTLEEGQAVEFEVETSD- 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGLQAANIVKL 66


>gi|253574512|ref|ZP_04851853.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
          sp. oral taxon 786 str. D14]
 gi|251846217|gb|EES74224.1| cold-shock DNA-binding domain-containing protein [Paenibacillus
          sp. oral taxon 786 str. D14]
          Length = 66

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ V ++ VQ + 
Sbjct: 1  METGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAITGEGFKTLDEGQRVQFNVVQGN- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQAENVVKL 66


>gi|83717433|ref|YP_439199.1| cold-shock domain-contain protein [Burkholderia thailandensis
          E264]
 gi|167577641|ref|ZP_02370515.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis TXDOH]
 gi|167615783|ref|ZP_02384418.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis Bt4]
 gi|257142321|ref|ZP_05590583.1| cold-shock domain-contain protein [Burkholderia thailandensis
          E264]
 gi|83651258|gb|ABC35322.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis E264]
          Length = 67

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     GDD+F H S + S G   L + Q V+++  +   
Sbjct: 1  METGTVKWFNETKGFGFITPDS---GGDDLFAHFSEIRSEGYKTLADNQKVSFE-TKRGP 56

Query: 62 NGKYSAENLKLV 73
           G  +A N+K +
Sbjct: 57 KGLQAA-NIKPL 67


>gi|163794103|ref|ZP_02188076.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
          BAL199]
 gi|159180717|gb|EDP65236.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
          BAL199]
          Length = 68

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G DVF+H +AV  +GL  L EGQ + Y+  +   
Sbjct: 1  MPTGTVKWFNTTKGYGFIKPD---DGGADVFVHITAVQRSGLQGLNEGQAIMYEM-KPQR 56

Query: 62 NGKYSAENLKLV 73
          NGK +AE LK +
Sbjct: 57 NGKMAAEELKPL 68


>gi|125624064|ref|YP_001032547.1| cold shock-like protein cspD2 [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|125624081|ref|YP_001032564.1| cold shock protein cspD [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|3850776|emb|CAA76697.1| cold shock protein D [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492872|emb|CAL97830.1| cold shock-like protein cspD2 [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|124492889|emb|CAL97848.1| cold shock protein cspD [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|300070833|gb|ADJ60233.1| Cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000]
 gi|300070850|gb|ADJ60250.1| Cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000]
 gi|326407854|gb|ADZ64925.1| cold shock protein [Lactococcus lactis subsp. lactis CV56]
          Length = 66

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT    +E G D+F H SA+ S G  +L EGQ V +D  +   
Sbjct: 1  MANGTVKWFNATKGFGFIT----SEDGQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQR 56

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 57 G--PQAVNIT 64


>gi|114561918|ref|YP_749431.1| cold-shock DNA-binding domain-containing protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114333211|gb|ABI70593.1| cold-shock DNA-binding protein family [Shewanella frigidimarina
          NCIMB 400]
 gi|149675718|dbj|BAF64739.1| cold shock protein [Shewanella livingstonensis]
          Length = 70

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+     G DVF+H  ++ S G   L EGQ V++D  Q    G
Sbjct: 6  TGLVKWFNEDKGFGFITPD---NGGADVFVHFRSITSEGFKTLAEGQKVSFDVEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 62 PQAANVVAV 70


>gi|197284696|ref|YP_002150568.1| cold shock protein [Proteus mirabilis HI4320]
 gi|227357693|ref|ZP_03842042.1| cold shock protein [Proteus mirabilis ATCC 29906]
 gi|194682183|emb|CAR41839.1| putative cold shock protein [Proteus mirabilis HI4320]
 gi|227162022|gb|EEI47036.1| cold shock protein [Proteus mirabilis ATCC 29906]
          Length = 70

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFITP    +   DVF+H SA+ S    +L EGQ V++   +N A G
Sbjct: 6  TGTVKWFNDDKGFGFITP---KDGSKDVFVHFSAIQSDSFKSLKEGQEVSFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVIGL 70


>gi|289435359|ref|YP_003465231.1| cold-shock domain family protein [Listeria seeligeri serovar 1/2b
          str. SLCC3954]
 gi|315283050|ref|ZP_07871326.1| putative cold-shock protein [Listeria marthii FSL S4-120]
 gi|315304007|ref|ZP_07874446.1| putative cold-shock protein [Listeria ivanovii FSL F6-596]
 gi|289171603|emb|CBH28149.1| cold-shock domain family protein [Listeria seeligeri serovar 1/2b
          str. SLCC3954]
 gi|313613309|gb|EFR87177.1| putative cold-shock protein [Listeria marthii FSL S4-120]
 gi|313627624|gb|EFR96318.1| putative cold-shock protein [Listeria ivanovii FSL F6-596]
          Length = 66

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V ++ V+   
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIEGDGFKTLDEGQSVEFEIVEGQ- 55

Query: 62 NGKYSAENLKL 72
           G  + +  KL
Sbjct: 56 RGPQAEKVTKL 66


>gi|229016986|ref|ZP_04173906.1| Cold shock-like protein cspB [Bacillus cereus AH1273]
 gi|229023167|ref|ZP_04179678.1| Cold shock-like protein cspB [Bacillus cereus AH1272]
 gi|228738092|gb|EEL88577.1| Cold shock-like protein cspB [Bacillus cereus AH1272]
 gi|228744257|gb|EEL94339.1| Cold shock-like protein cspB [Bacillus cereus AH1273]
          Length = 65

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      +  DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIE----MDGSDDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|126733685|ref|ZP_01749432.1| cold shock protein CspA-related protein, putative [Roseobacter
          sp. CCS2]
 gi|126716551|gb|EBA13415.1| cold shock protein CspA-related protein, putative [Roseobacter
          sp. CCS2]
          Length = 68

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G      DVF+H SAV  +GL  L + Q VT+D V+   
Sbjct: 1  MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLQDDQKVTFD-VEAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESAVNLAL 67


>gi|108758693|ref|YP_628940.1| cold-shock protein CspC [Myxococcus xanthus DK 1622]
 gi|4193394|gb|AAD10035.1| CspC [Myxococcus xanthus]
 gi|108462573|gb|ABF87758.1| cold-shock protein CspC [Myxococcus xanthus DK 1622]
          Length = 67

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +G    G+DVF+H SA+   G   L EGQ V ++  +   
Sbjct: 1  MATGTVKWFNDAKGFGFIVQDG---GGEDVFVHHSAINMDGFRTLQEGQKVEFEVGRGPK 57

Query: 62 NGKYSAENLK 71
               A+N++
Sbjct: 58 G--LQAQNVR 65


>gi|89093186|ref|ZP_01166136.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp.
          MED92]
 gi|89082482|gb|EAR61704.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp.
          MED92]
          Length = 67

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N +KG+GFI  E    +G DVF H SA+   G  +L EGQ V +   Q  
Sbjct: 1  MATTGTVKWFNDEKGFGFIEQE----NGPDVFAHFSAIQGDGFKSLAEGQKVEFTITQGQ 56

Query: 61 ANGKYSAENLKLV 73
                AEN+  V
Sbjct: 57 KG--PQAENIVKV 67


>gi|296536432|ref|ZP_06898531.1| cold shock protein [Roseomonas cervicalis ATCC 49957]
 gi|296263249|gb|EFH09775.1| cold shock protein [Roseomonas cervicalis ATCC 49957]
          Length = 81

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP KG+GFI PE   +   DVF+H S V  AGL  L EG+ V ++  Q   
Sbjct: 14 MPIGTVKWFNPTKGFGFIQPE---DGSKDVFVHISDVQRAGLQGLNEGERVEFEL-QRGR 69

Query: 62 NGKYSAENLKLV 73
           GK SA NLK V
Sbjct: 70 EGKVSAGNLKQV 81


>gi|238919761|ref|YP_002933276.1| hypothetical protein NT01EI_1865 [Edwardsiella ictaluri 93-146]
 gi|238869330|gb|ACR69041.1| conserved domain protein [Edwardsiella ictaluri 93-146]
          Length = 69

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFITP    +   DVF+H SA+ S G   L EGQ V +   Q+   
Sbjct: 4  KNGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSDGFKTLAEGQQVEFSI-QDSPR 59

Query: 63 GKYSAENLKL 72
          G  +A+ + L
Sbjct: 60 GPAAADVIAL 69


>gi|187929805|ref|YP_001900292.1| cold-shock DNA-binding domain-containing protein [Ralstonia
          pickettii 12J]
 gi|241663931|ref|YP_002982291.1| cold-shock DNA-binding domain-containing protein [Ralstonia
          pickettii 12D]
 gi|309781480|ref|ZP_07676216.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
 gi|187726695|gb|ACD27860.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
 gi|240865958|gb|ACS63619.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
 gi|308919893|gb|EFP65554.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
          Length = 67

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+   E G+++F H SA+  AG   L E Q V+++  Q   
Sbjct: 1  MALGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMAGFKTLKENQRVSFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQATNIQ 65


>gi|92113792|ref|YP_573720.1| cold-shock DNA-binding protein family protein [Chromohalobacter
          salexigens DSM 3043]
 gi|91796882|gb|ABE59021.1| cold-shock DNA-binding protein family [Chromohalobacter
          salexigens DSM 3043]
          Length = 67

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+PE   + GDD+F H S + + G  +L +GQ V++D  Q   
Sbjct: 1  MATGTVKWFNDAKGFGFISPE---DGGDDLFAHFSEIQAEGFKSLQDGQKVSFDVTQGKK 57

Query: 62 NGKYSAENLK 71
               A N+K
Sbjct: 58 G--LQASNIK 65


>gi|54303515|ref|YP_133508.1| putative cold shock-like protein [Photobacterium profundum SS9]
 gi|46916945|emb|CAG23708.1| putative Cold shock-like protein [Photobacterium profundum SS9]
          Length = 69

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+A+ G   L EGQ V++D  Q    G
Sbjct: 5  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIATEGFKTLAEGQKVSFDVEQGQ-KG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PQAANVVAL 69


>gi|288556195|ref|YP_003428130.1| major cold shock protein [Bacillus pseudofirmus OF4]
 gi|288547355|gb|ADC51238.1| major cold shock protein [Bacillus pseudofirmus OF4]
          Length = 66

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ VT++ V+ + 
Sbjct: 1  MLEGTVKWFNAEKGFGFIERE----GGDDVFVHFSAIQIDGFKTLEEGQAVTFEIVEGNR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--EQAANVQ 64


>gi|209809400|ref|YP_002264938.1| cold shock-like protein [Aliivibrio salmonicida LFI1238]
 gi|208010962|emb|CAQ81368.1| cold shock-like protein [Aliivibrio salmonicida LFI1238]
          Length = 69

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFIT E     G DVF H SA+ S G   L EGQ VT++  Q    G
Sbjct: 5  TGTVKWFNEDKGFGFITQE---NGGPDVFAHFSAIQSEGFKTLKEGQAVTFEVEQG-PKG 60

Query: 64 KYSA 67
            +A
Sbjct: 61 PQAA 64


>gi|220931393|ref|YP_002508301.1| putative cold-shock DNA-binding domain protein [Halothermothrix
          orenii H 168]
 gi|219992703|gb|ACL69306.1| putative cold-shock DNA-binding domain protein [Halothermothrix
          orenii H 168]
          Length = 68

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +++ G +KW++  KG+GFI  E     GDDVF+H SA+   G  +L EGQ V ++ VQ D
Sbjct: 2  IIYNGKVKWFSDKKGFGFIEREA----GDDVFVHFSAIQKEGFKSLDEGQEVEFEVVQGD 57

Query: 61 ANGKYSAENLKL 72
            G  +A  + L
Sbjct: 58 -RGPQAANVVTL 68


>gi|311032516|ref|ZP_07710606.1| major cold shock protein [Bacillus sp. m3-13]
          Length = 66

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI      + GDDVF+H SA+   G  +L EGQ VT++ VQ + 
Sbjct: 1  MLQGTVKWFNAEKGFGFIE----RQDGDDVFVHFSAIQGEGFKSLEEGQSVTFEIVQGNR 56

Query: 62 NGKYSAEN 69
            + +  N
Sbjct: 57 GDQAANVN 64


>gi|310823940|ref|YP_003956298.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1]
 gi|309397012|gb|ADO74471.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +G    G+DVF H +A+   G   L EGQ V +D  +   
Sbjct: 1  MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLQEGQKVQFDVARGPK 57

Query: 62 NGKYSAENLK 71
               A+N++
Sbjct: 58 G--LQAQNVR 65


>gi|91793188|ref|YP_562839.1| CspD, cold shock [Shewanella denitrificans OS217]
 gi|91715190|gb|ABE55116.1| cold-shock DNA-binding protein family [Shewanella denitrificans
          OS217]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + GDDVF H S +   G   L  GQ V ++  Q   
Sbjct: 1  MANGTVKWFNNAKGFGFICPD---QGGDDVFAHYSTIEMEGYRTLKAGQPVQFEVEQGPK 57

Query: 62 NGKYSA 67
              SA
Sbjct: 58 GMHASA 63


>gi|239918416|ref|YP_002957974.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC
          2665]
 gi|281415387|ref|ZP_06247129.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC
          2665]
 gi|6225210|sp|O30875|CSPA_MICLC RecName: Full=Major cold shock protein
 gi|2425105|gb|AAB70836.1| major cold-shock protein [Micrococcus luteus NCTC 2665]
 gi|239839623|gb|ACS31420.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC
          2665]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI PE   ++  DVF+H SA+   G   L E   V ++  Q+  
Sbjct: 1  MAVGTVKWFNAEKGYGFIAPE---DNSADVFVHFSAIQGNGFKELQENDRVEFE-TQDGP 56

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 57 KGLQAANVTKL 67


>gi|75758582|ref|ZP_00738701.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|206972882|ref|ZP_03233804.1| conserved domain protein [Bacillus cereus AH1134]
 gi|228905763|ref|ZP_04069678.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|228943462|ref|ZP_04105906.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228976283|ref|ZP_04136754.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|229073834|ref|ZP_04206924.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|229191418|ref|ZP_04318403.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|74493928|gb|EAO57025.1| Cold shock protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|206731766|gb|EDZ48966.1| conserved domain protein [Bacillus cereus AH1134]
 gi|228592100|gb|EEK49934.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|228709285|gb|EEL61369.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|228783387|gb|EEM31495.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228816242|gb|EEM62423.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228853880|gb|EEM98623.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ VT+D  Q   
Sbjct: 1  MEKGNVKWFNGEKGFGFIERE----GGDDVFVHFSAIQGEGYKTLEEGQAVTFDLEQGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQASNVR 64


>gi|15800638|ref|NP_286652.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H7 EDL933]
 gi|15830220|ref|NP_308993.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H7 str. Sakai]
 gi|16128848|ref|NP_415401.1| inhibitor of DNA replication, cold shock protein homolog
          [Escherichia coli str. K-12 substr. MG1655]
 gi|24112256|ref|NP_706766.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella flexneri 2a str. 301]
 gi|30062368|ref|NP_836539.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella flexneri 2a str. 2457T]
 gi|74311425|ref|YP_309844.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella sonnei Ss046]
 gi|82543367|ref|YP_407314.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella boydii Sb227]
 gi|82777597|ref|YP_403946.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella dysenteriae Sd197]
 gi|89107731|ref|AP_001511.1| cold shock protein homolog [Escherichia coli str. K-12 substr.
          W3110]
 gi|110641081|ref|YP_668811.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli 536]
 gi|157156996|ref|YP_001462077.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli E24377A]
 gi|157160403|ref|YP_001457721.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli HS]
 gi|168752461|ref|ZP_02777483.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4113]
 gi|168758796|ref|ZP_02783803.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4401]
 gi|168765085|ref|ZP_02790092.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4501]
 gi|168769857|ref|ZP_02794864.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4486]
 gi|168772142|ref|ZP_02797149.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4486]
 gi|168777873|ref|ZP_02802880.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4196]
 gi|168783791|ref|ZP_02808798.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4076]
 gi|168789132|ref|ZP_02814139.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC869]
 gi|168802711|ref|ZP_02827718.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC508]
 gi|170020717|ref|YP_001725671.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli ATCC 8739]
 gi|170080539|ref|YP_001729859.1| cold shock protein-like protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|170683368|ref|YP_001744327.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli SMS-3-5]
 gi|170769169|ref|ZP_02903622.1| cold shock domain protein CspD [Escherichia albertii TW07627]
 gi|187731789|ref|YP_001880922.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella boydii CDC 3083-94]
 gi|188495418|ref|ZP_03002688.1| cold shock domain protein CspD [Escherichia coli 53638]
 gi|191167603|ref|ZP_03029414.1| cold shock domain protein CspD [Escherichia coli B7A]
 gi|191172141|ref|ZP_03033685.1| cold shock domain protein CspD [Escherichia coli F11]
 gi|193064669|ref|ZP_03045748.1| cold shock domain protein CspD [Escherichia coli E22]
 gi|193071761|ref|ZP_03052657.1| cold shock domain protein CspD [Escherichia coli E110019]
 gi|194428406|ref|ZP_03060947.1| cold shock domain protein CspD [Escherichia coli B171]
 gi|194433169|ref|ZP_03065451.1| cold shock domain protein CspD [Shigella dysenteriae 1012]
 gi|194438741|ref|ZP_03070828.1| cold shock domain protein CspD [Escherichia coli 101-1]
 gi|195939543|ref|ZP_03084925.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H7 str. EC4024]
 gi|208807912|ref|ZP_03250249.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4206]
 gi|208814789|ref|ZP_03255968.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4045]
 gi|208822048|ref|ZP_03262367.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4042]
 gi|209400231|ref|YP_002269554.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4115]
 gi|209918129|ref|YP_002292213.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli SE11]
 gi|215486011|ref|YP_002328442.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O127:H6 str. E2348/69]
 gi|217324268|ref|ZP_03440352.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          TW14588]
 gi|218553466|ref|YP_002386379.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli IAI1]
 gi|218557784|ref|YP_002390697.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli S88]
 gi|218688662|ref|YP_002396874.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli ED1a]
 gi|218694354|ref|YP_002402021.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli 55989]
 gi|218700605|ref|YP_002408234.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli IAI39]
 gi|218704309|ref|YP_002411828.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli UMN026]
 gi|227884154|ref|ZP_04001959.1| cold shock family protein CspD [Escherichia coli 83972]
 gi|238900139|ref|YP_002925935.1| cold shock protein-like protein [Escherichia coli BW2952]
 gi|253774090|ref|YP_003036921.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160995|ref|YP_003044103.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli B str. REL606]
 gi|254792081|ref|YP_003076918.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H7 str. TW14359]
 gi|256020999|ref|ZP_05434864.1| stationary phase/starvation inducible regulatory protein CspD
          [Shigella sp. D9]
 gi|256023493|ref|ZP_05437358.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia sp. 4_1_40B]
 gi|260843131|ref|YP_003220909.1| cold shock protein homolog CspD [Escherichia coli O103:H2 str.
          12009]
 gi|260854172|ref|YP_003228063.1| cold shock protein homolog CspD [Escherichia coli O26:H11 str.
          11368]
 gi|260867053|ref|YP_003233455.1| cold shock protein homolog CspD [Escherichia coli O111:H- str.
          11128]
 gi|261225536|ref|ZP_05939817.1| cold shock protein-like protein [Escherichia coli O157:H7 str.
          FRIK2000]
 gi|261258495|ref|ZP_05951028.1| hypothetical protein EscherichiacoliO157EcO_22126 [Escherichia
          coli O157:H7 str. FRIK966]
 gi|293404188|ref|ZP_06648182.1| cold shock-like protein cspD [Escherichia coli FVEC1412]
 gi|293409259|ref|ZP_06652835.1| cold shock domain-containing protein CspD [Escherichia coli B354]
 gi|297516223|ref|ZP_06934609.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli OP50]
 gi|298379969|ref|ZP_06989574.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli FVEC1302]
 gi|300817018|ref|ZP_07097237.1| cold shock domain protein CspD [Escherichia coli MS 107-1]
 gi|300823618|ref|ZP_07103745.1| cold shock domain protein CspD [Escherichia coli MS 119-7]
 gi|300895697|ref|ZP_07114293.1| cold shock domain protein CspD [Escherichia coli MS 198-1]
 gi|300902416|ref|ZP_07120398.1| cold shock domain protein CspD [Escherichia coli MS 84-1]
 gi|300921088|ref|ZP_07137472.1| cold shock domain protein CspD [Escherichia coli MS 115-1]
 gi|300922549|ref|ZP_07138650.1| cold shock domain protein CspD [Escherichia coli MS 182-1]
 gi|300928423|ref|ZP_07143956.1| cold shock domain protein CspD [Escherichia coli MS 187-1]
 gi|300935726|ref|ZP_07150694.1| cold shock domain protein CspD [Escherichia coli MS 21-1]
 gi|300950108|ref|ZP_07164054.1| cold shock domain protein CspD [Escherichia coli MS 116-1]
 gi|300954452|ref|ZP_07166904.1| cold shock domain protein CspD [Escherichia coli MS 175-1]
 gi|300978556|ref|ZP_07174309.1| cold shock domain protein CspD [Escherichia coli MS 45-1]
 gi|300991781|ref|ZP_07179644.1| cold shock domain protein CspD [Escherichia coli MS 200-1]
 gi|301020524|ref|ZP_07184608.1| cold shock domain protein CspD [Escherichia coli MS 69-1]
 gi|301024393|ref|ZP_07188080.1| cold shock domain protein CspD [Escherichia coli MS 196-1]
 gi|301051190|ref|ZP_07198020.1| cold shock domain protein CspD [Escherichia coli MS 185-1]
 gi|301305346|ref|ZP_07211441.1| cold shock domain protein CspD [Escherichia coli MS 124-1]
 gi|301328606|ref|ZP_07221667.1| cold shock domain protein CspD [Escherichia coli MS 78-1]
 gi|301646324|ref|ZP_07246212.1| cold shock domain protein CspD [Escherichia coli MS 146-1]
 gi|306812670|ref|ZP_07446863.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli NC101]
 gi|307137508|ref|ZP_07496864.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli H736]
 gi|307311732|ref|ZP_07591372.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|309783998|ref|ZP_07678642.1| cold shock domain protein CspD [Shigella dysenteriae 1617]
 gi|309795323|ref|ZP_07689741.1| cold shock domain protein CspD [Escherichia coli MS 145-7]
 gi|312969051|ref|ZP_07783258.1| cold shock domain protein CspD [Escherichia coli 2362-75]
 gi|312971007|ref|ZP_07785186.1| cold shock domain protein CspD [Escherichia coli 1827-70]
 gi|331641401|ref|ZP_08342536.1| cold shock domain protein CspD [Escherichia coli H736]
 gi|331646148|ref|ZP_08347251.1| cold shock domain protein CspD [Escherichia coli M605]
 gi|331651899|ref|ZP_08352918.1| cold shock domain protein CspD [Escherichia coli M718]
 gi|331656952|ref|ZP_08357914.1| cold shock domain protein CspD [Escherichia coli TA206]
 gi|331662294|ref|ZP_08363217.1| cold shock domain protein CspD [Escherichia coli TA143]
 gi|331667254|ref|ZP_08368119.1| cold shock domain protein CspD [Escherichia coli TA271]
 gi|331672417|ref|ZP_08373208.1| cold shock domain protein CspD [Escherichia coli TA280]
 gi|331676668|ref|ZP_08377364.1| cold shock domain protein CspD [Escherichia coli H591]
 gi|331682389|ref|ZP_08383008.1| cold shock domain protein CspD [Escherichia coli H299]
 gi|71154152|sp|P0A970|CSPD_ECO57 RecName: Full=Cold shock-like protein CspD; Short=CSP-D
 gi|71154153|sp|P0A969|CSPD_ECOL6 RecName: Full=Cold shock-like protein CspD; Short=CSP-D
 gi|71154154|sp|P0A968|CSPD_ECOLI RecName: Full=Cold shock-like protein CspD; Short=CSP-D
 gi|71154155|sp|P0A971|CSPD_SHIFL RecName: Full=Cold shock-like protein CspD; Short=CSP-D
 gi|12513910|gb|AAG55262.1|AE005269_6 cold shock protein [Escherichia coli O157:H7 str. EDL933]
 gi|1651400|dbj|BAA35599.1| cold shock protein homolog [Escherichia coli str. K12 substr.
          W3110]
 gi|1787107|gb|AAC73967.1| inhibitor of DNA replication, cold shock protein homolog
          [Escherichia coli str. K-12 substr. MG1655]
 gi|13360425|dbj|BAB34389.1| cold shock protein [Escherichia coli O157:H7 str. Sakai]
 gi|24051106|gb|AAN42473.1| cold shock protein [Shigella flexneri 2a str. 301]
 gi|30040613|gb|AAP16345.1| cold shock protein [Shigella flexneri 2a str. 2457T]
 gi|73854902|gb|AAZ87609.1| cold shock protein [Shigella sonnei Ss046]
 gi|81241745|gb|ABB62455.1| cold shock protein [Shigella dysenteriae Sd197]
 gi|81244778|gb|ABB65486.1| cold shock protein [Shigella boydii Sb227]
 gi|110342673|gb|ABG68910.1| cold shock-like protein CspD [Escherichia coli 536]
 gi|157066083|gb|ABV05338.1| cold shock domain protein CspD [Escherichia coli HS]
 gi|157079026|gb|ABV18734.1| cold shock domain protein CspD [Escherichia coli E24377A]
 gi|169755645|gb|ACA78344.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|169888374|gb|ACB02081.1| cold shock protein-like protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|170121821|gb|EDS90752.1| cold shock domain protein CspD [Escherichia albertii TW07627]
 gi|170521086|gb|ACB19264.1| cold shock domain protein CspD [Escherichia coli SMS-3-5]
 gi|187428781|gb|ACD08055.1| cold shock domain protein CspD [Shigella boydii CDC 3083-94]
 gi|187766991|gb|EDU30835.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4196]
 gi|188013698|gb|EDU51820.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4113]
 gi|188490617|gb|EDU65720.1| cold shock domain protein CspD [Escherichia coli 53638]
 gi|188998900|gb|EDU67886.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4076]
 gi|189354451|gb|EDU72870.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4401]
 gi|189359394|gb|EDU77813.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4486]
 gi|189361135|gb|EDU79554.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4486]
 gi|189365045|gb|EDU83461.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4501]
 gi|189371144|gb|EDU89560.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC869]
 gi|189375363|gb|EDU93779.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC508]
 gi|190902364|gb|EDV62102.1| cold shock domain protein CspD [Escherichia coli B7A]
 gi|190907668|gb|EDV67263.1| cold shock domain protein CspD [Escherichia coli F11]
 gi|192927726|gb|EDV82341.1| cold shock domain protein CspD [Escherichia coli E22]
 gi|192954918|gb|EDV85425.1| cold shock domain protein CspD [Escherichia coli E110019]
 gi|194413621|gb|EDX29902.1| cold shock domain protein CspD [Escherichia coli B171]
 gi|194418666|gb|EDX34753.1| cold shock domain protein CspD [Shigella dysenteriae 1012]
 gi|194422373|gb|EDX38373.1| cold shock domain protein CspD [Escherichia coli 101-1]
 gi|208727713|gb|EDZ77314.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4206]
 gi|208731437|gb|EDZ80125.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4045]
 gi|208737533|gb|EDZ85216.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4042]
 gi|209161631|gb|ACI39064.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          EC4115]
 gi|209911388|dbj|BAG76462.1| cold shock-like protein [Escherichia coli SE11]
 gi|215264083|emb|CAS08425.1| cold shock protein homolog [Escherichia coli O127:H6 str.
          E2348/69]
 gi|217320489|gb|EEC28913.1| cold shock domain protein CspD [Escherichia coli O157:H7 str.
          TW14588]
 gi|218351086|emb|CAU96790.1| cold shock protein homolog [Escherichia coli 55989]
 gi|218360234|emb|CAQ97784.1| cold shock protein homolog [Escherichia coli IAI1]
 gi|218364553|emb|CAR02237.1| cold shock protein homolog [Escherichia coli S88]
 gi|218370591|emb|CAR18398.1| cold shock protein homolog [Escherichia coli IAI39]
 gi|218426226|emb|CAR07051.1| cold shock protein homolog [Escherichia coli ED1a]
 gi|218431406|emb|CAR12284.1| cold shock protein homolog [Escherichia coli UMN026]
 gi|227838906|gb|EEJ49372.1| cold shock family protein CspD [Escherichia coli 83972]
 gi|238860165|gb|ACR62163.1| cold shock protein-like protein [Escherichia coli BW2952]
 gi|242376695|emb|CAQ31408.1| DNA replication inhibitor [Escherichia coli BL21(DE3)]
 gi|253325134|gb|ACT29736.1| cold-shock DNA-binding domain protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253972896|gb|ACT38567.1| cold shock protein-like protein [Escherichia coli B str. REL606]
 gi|253977110|gb|ACT42780.1| cold shock protein-like protein [Escherichia coli BL21(DE3)]
 gi|254591481|gb|ACT70842.1| cold shock protein-like protein [Escherichia coli O157:H7 str.
          TW14359]
 gi|257752821|dbj|BAI24323.1| cold shock protein homolog CspD [Escherichia coli O26:H11 str.
          11368]
 gi|257758278|dbj|BAI29775.1| cold shock protein homolog CspD [Escherichia coli O103:H2 str.
          12009]
 gi|257763409|dbj|BAI34904.1| cold shock protein homolog CspD [Escherichia coli O111:H- str.
          11128]
 gi|260449973|gb|ACX40395.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|281178015|dbj|BAI54345.1| cold shock-like protein [Escherichia coli SE15]
 gi|284920734|emb|CBG33797.1| cold shock-like protein CspD [Escherichia coli 042]
 gi|291428774|gb|EFF01799.1| cold shock-like protein cspD [Escherichia coli FVEC1412]
 gi|291469727|gb|EFF12211.1| cold shock domain-containing protein CspD [Escherichia coli B354]
 gi|294490756|gb|ADE89512.1| cold shock domain protein CspD [Escherichia coli IHE3034]
 gi|298279667|gb|EFI21175.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli FVEC1302]
 gi|299880400|gb|EFI88611.1| cold shock domain protein CspD [Escherichia coli MS 196-1]
 gi|300297211|gb|EFJ53596.1| cold shock domain protein CspD [Escherichia coli MS 185-1]
 gi|300305535|gb|EFJ60055.1| cold shock domain protein CspD [Escherichia coli MS 200-1]
 gi|300318602|gb|EFJ68386.1| cold shock domain protein CspD [Escherichia coli MS 175-1]
 gi|300360366|gb|EFJ76236.1| cold shock domain protein CspD [Escherichia coli MS 198-1]
 gi|300398657|gb|EFJ82195.1| cold shock domain protein CspD [Escherichia coli MS 69-1]
 gi|300405448|gb|EFJ88986.1| cold shock domain protein CspD [Escherichia coli MS 84-1]
 gi|300409635|gb|EFJ93173.1| cold shock domain protein CspD [Escherichia coli MS 45-1]
 gi|300411939|gb|EFJ95249.1| cold shock domain protein CspD [Escherichia coli MS 115-1]
 gi|300421095|gb|EFK04406.1| cold shock domain protein CspD [Escherichia coli MS 182-1]
 gi|300450523|gb|EFK14143.1| cold shock domain protein CspD [Escherichia coli MS 116-1]
 gi|300459089|gb|EFK22582.1| cold shock domain protein CspD [Escherichia coli MS 21-1]
 gi|300463586|gb|EFK27079.1| cold shock domain protein CspD [Escherichia coli MS 187-1]
 gi|300523818|gb|EFK44887.1| cold shock domain protein CspD [Escherichia coli MS 119-7]
 gi|300530370|gb|EFK51432.1| cold shock domain protein CspD [Escherichia coli MS 107-1]
 gi|300839364|gb|EFK67124.1| cold shock domain protein CspD [Escherichia coli MS 124-1]
 gi|300844998|gb|EFK72758.1| cold shock domain protein CspD [Escherichia coli MS 78-1]
 gi|301075427|gb|EFK90233.1| cold shock domain protein CspD [Escherichia coli MS 146-1]
 gi|305853433|gb|EFM53872.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli NC101]
 gi|306908287|gb|EFN38786.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|307552723|gb|ADN45498.1| cold shock-like protein CspD [Escherichia coli ABU 83972]
 gi|307627710|gb|ADN72014.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli UM146]
 gi|308120973|gb|EFO58235.1| cold shock domain protein CspD [Escherichia coli MS 145-7]
 gi|308928141|gb|EFP73604.1| cold shock domain protein CspD [Shigella dysenteriae 1617]
 gi|310336768|gb|EFQ01935.1| cold shock domain protein CspD [Escherichia coli 1827-70]
 gi|312286453|gb|EFR14366.1| cold shock domain protein CspD [Escherichia coli 2362-75]
 gi|312945398|gb|ADR26225.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O83:H1 str. NRG 857C]
 gi|313650207|gb|EFS14619.1| cold shock domain protein CspD [Shigella flexneri 2a str. 2457T]
 gi|315060166|gb|ADT74493.1| cold shock protein-like protein [Escherichia coli W]
 gi|315135529|dbj|BAJ42688.1| cold shock protein [Escherichia coli DH1]
 gi|315257918|gb|EFU37886.1| cold shock domain protein CspD [Escherichia coli MS 85-1]
 gi|315287286|gb|EFU46697.1| cold shock domain protein CspD [Escherichia coli MS 110-3]
 gi|315291074|gb|EFU50437.1| cold shock domain protein CspD [Escherichia coli MS 153-1]
 gi|315296656|gb|EFU55951.1| cold shock domain protein CspD [Escherichia coli MS 16-3]
 gi|315619192|gb|EFU99771.1| cold shock domain protein CspD [Escherichia coli 3431]
 gi|320175321|gb|EFW50427.1| Cold shock protein CspD [Shigella dysenteriae CDC 74-1112]
 gi|320180598|gb|EFW55527.1| Cold shock protein CspD [Shigella boydii ATCC 9905]
 gi|320183181|gb|EFW58039.1| Cold shock protein CspD [Shigella flexneri CDC 796-83]
 gi|320192634|gb|EFW67275.1| Cold shock protein CspD [Escherichia coli O157:H7 str. EC1212]
 gi|320196625|gb|EFW71248.1| Cold shock protein CspD [Escherichia coli WV_060327]
 gi|320202275|gb|EFW76846.1| Cold shock protein CspD [Escherichia coli EC4100B]
 gi|320637751|gb|EFX07543.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H7 str. G5101]
 gi|320642874|gb|EFX12075.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H- str. 493-89]
 gi|320648331|gb|EFX16986.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H- str. H 2687]
 gi|320654169|gb|EFX22237.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320659793|gb|EFX27349.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664263|gb|EFX31414.1| stationary phase/starvation inducible regulatory protein CspD
          [Escherichia coli O157:H7 str. LSU-61]
 gi|323155746|gb|EFZ41915.1| cold shock domain protein CspD [Escherichia coli EPECa14]
 gi|323159505|gb|EFZ45485.1| cold shock domain protein CspD [Escherichia coli E128010]
 gi|323165817|gb|EFZ51603.1| cold shock domain protein CspD [Shigella sonnei 53G]
 gi|323172149|gb|EFZ57787.1| cold shock domain protein CspD [Escherichia coli LT-68]
 gi|323175498|gb|EFZ61093.1| cold shock domain protein CspD [Escherichia coli 1180]
 gi|323185155|gb|EFZ70520.1| cold shock domain protein CspD [Escherichia coli 1357]
 gi|323190702|gb|EFZ75971.1| cold shock domain protein CspD [Escherichia coli RN587/1]
 gi|323379277|gb|ADX51545.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323942797|gb|EGB38962.1| cold shock domain-containing protein CspD [Escherichia coli E482]
 gi|323947162|gb|EGB43172.1| cold shock domain-containing protein CspD [Escherichia coli H120]
 gi|323953416|gb|EGB49282.1| cold shock domain-containing protein CspD [Escherichia coli H252]
 gi|323958169|gb|EGB53878.1| cold shock domain-containing protein CspD [Escherichia coli H263]
 gi|323962993|gb|EGB58565.1| cold shock domain-containing protein CspD [Escherichia coli H489]
 gi|323967316|gb|EGB62739.1| cold shock domain-containing protein CspD [Escherichia coli M863]
 gi|323969635|gb|EGB64922.1| cold shock domain-containing protein CspD [Escherichia coli
          TA007]
 gi|323976733|gb|EGB71821.1| cold shock domain-containing protein CspD [Escherichia coli
          TW10509]
 gi|324009834|gb|EGB79053.1| cold shock domain protein CspD [Escherichia coli MS 57-2]
 gi|324012987|gb|EGB82206.1| cold shock domain protein CspD [Escherichia coli MS 60-1]
 gi|324019030|gb|EGB88249.1| cold shock domain protein CspD [Escherichia coli MS 117-3]
 gi|324116094|gb|EGC10018.1| cold shock domain-containing protein CspD [Escherichia coli
          E1167]
 gi|326346202|gb|EGD69940.1| Cold shock protein CspD [Escherichia coli O157:H7 str. 1044]
 gi|327253668|gb|EGE65297.1| cold shock domain protein CspD [Escherichia coli STEC_7v]
 gi|330910662|gb|EGH39172.1| cold shock protein CspD [Escherichia coli AA86]
 gi|331038199|gb|EGI10419.1| cold shock domain protein CspD [Escherichia coli H736]
 gi|331044900|gb|EGI17027.1| cold shock domain protein CspD [Escherichia coli M605]
 gi|331050177|gb|EGI22235.1| cold shock domain protein CspD [Escherichia coli M718]
 gi|331055200|gb|EGI27209.1| cold shock domain protein CspD [Escherichia coli TA206]
 gi|331060716|gb|EGI32680.1| cold shock domain protein CspD [Escherichia coli TA143]
 gi|331065610|gb|EGI37503.1| cold shock domain protein CspD [Escherichia coli TA271]
 gi|331070612|gb|EGI41976.1| cold shock domain protein CspD [Escherichia coli TA280]
 gi|331075357|gb|EGI46655.1| cold shock domain protein CspD [Escherichia coli H591]
 gi|331080020|gb|EGI51199.1| cold shock domain protein CspD [Escherichia coli H299]
 gi|332088860|gb|EGI93972.1| cold shock domain protein CspD [Shigella boydii 5216-82]
 gi|332091104|gb|EGI96194.1| cold shock domain protein CspD [Shigella dysenteriae 155-74]
 gi|332097053|gb|EGJ02036.1| cold shock domain protein CspD [Shigella boydii 3594-74]
 gi|332342268|gb|AEE55602.1| cold shock domain protein CspD [Escherichia coli UMNK88]
 gi|332759795|gb|EGJ90098.1| cold shock domain protein CspD [Shigella flexneri 4343-70]
 gi|332760573|gb|EGJ90862.1| cold shock domain protein CspD [Shigella flexneri 2747-71]
 gi|332762936|gb|EGJ93186.1| cold shock domain protein CspD [Shigella flexneri K-671]
 gi|332768058|gb|EGJ98244.1| cold shock domain protein CspD [Shigella flexneri 2930-71]
 gi|333006683|gb|EGK26182.1| cold shock domain protein CspD [Shigella flexneri VA-6]
 gi|333006920|gb|EGK26415.1| cold shock domain protein CspD [Shigella flexneri K-218]
 gi|333008808|gb|EGK28268.1| cold shock domain protein CspD [Shigella flexneri K-272]
 gi|333020115|gb|EGK39385.1| cold shock domain protein CspD [Shigella flexneri K-227]
 gi|333021002|gb|EGK40260.1| cold shock domain protein CspD [Shigella flexneri K-304]
          Length = 74

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQG-P 56

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 57 KGNHASVIVPV 67


>gi|317491463|ref|ZP_07949899.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921010|gb|EFV42333.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 69

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI      + G DVF+H SA+AS G   L EGQ V Y   Q+   
Sbjct: 4  KTGQVKWFNESKGFGFIEQH---DGGKDVFVHFSAIASEGFKTLAEGQRVEYTI-QDSPR 59

Query: 63 GKYSAENLKL 72
          G  +A  + L
Sbjct: 60 GPAAANVVAL 69


>gi|206896315|ref|YP_002247470.1| hypothetical protein COPRO5265_1162 [Coprothermobacter
          proteolyticus DSM 5265]
 gi|206738932|gb|ACI18010.1| conserved domain protein [Coprothermobacter proteolyticus DSM
          5265]
          Length = 84

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW++  KGYGFIT +   +   DVF+H SA+   G   L EG+ V ++  +  A
Sbjct: 18 MYAGTVKWFDAQKGYGFITRD---DGEGDVFVHFSAIEGDGFKTLNEGEKVEFEVSRG-A 73

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 74 KGPQAAHVVK 83


>gi|28870519|ref|NP_793138.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|28853767|gb|AAO56833.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 89

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G  +  +D+F H SA+   G   L  GQ V ++ +Q   
Sbjct: 1  MLNGKVKWFNNAKGYGFILEDGKPD--EDLFAHYSAIQMDGYKTLKAGQPVRFEIIQGPK 58

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 59 G--LHAVNIQ 66


>gi|114321823|ref|YP_743506.1| cold-shock DNA-binding protein family protein [Alkalilimnicola
          ehrlichii MLHE-1]
 gi|114228217|gb|ABI58016.1| cold-shock DNA-binding protein family [Alkalilimnicola ehrlichii
          MLHE-1]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++  KG+GFITP   T+ G DVF+H SA+  +G  +L EGQ V ++  QN  
Sbjct: 1  MITGTVKWFDDAKGFGFITP---TDGGKDVFVHHSAINGSGFKSLAEGQQVQFE-TQNTP 56

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 57 KGLAAANV 64


>gi|313891994|ref|ZP_07825595.1| cold shock-like protein CspE [Dialister microaerophilus UPII
          345-E]
 gi|329120945|ref|ZP_08249576.1| cold shock protein [Dialister micraerophilus DSM 19965]
 gi|313119637|gb|EFR42828.1| cold shock-like protein CspE [Dialister microaerophilus UPII
          345-E]
 gi|327471107|gb|EGF16561.1| cold shock protein [Dialister micraerophilus DSM 19965]
          Length = 65

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++ +KGYGFI  E     G DVF+H SA+ + G   LTEGQ V +D ++  A G
Sbjct: 2  KGTVKWFSAEKGYGFIERE----EGGDVFVHFSAIQTEGFKTLTEGQKVEFDIIEG-ARG 56

Query: 64 KYSAENL 70
            +A  +
Sbjct: 57 PQAANVV 63


>gi|257884506|ref|ZP_05664159.1| cold-shock protein [Enterococcus faecium 1,231,501]
 gi|257820344|gb|EEV47492.1| cold-shock protein [Enterococcus faecium 1,231,501]
          Length = 66

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+   G   L EGQ V+YD V++  
Sbjct: 1  MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQGDGFKTLEEGQAVSYD-VEDGQ 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGPQAINIVK 65


>gi|325983251|ref|YP_004295653.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
          sp. AL212]
 gi|325532770|gb|ADZ27491.1| cold-shock DNA-binding domain protein [Nitrosomonas sp. AL212]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H SA++S G  +L E Q VT+D      
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGGEDIFAHFSAISSGGYKSLREAQRVTFDIT-TGP 56

Query: 62 NGKYSAENL 70
           GK ++  +
Sbjct: 57 KGKQASNIV 65


>gi|297560234|ref|YP_003679208.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296844682|gb|ADH66702.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  +G    G DVF H SA+ + G   L EGQ V +D  Q   
Sbjct: 1  MATGKVKWFNGEKGFGFIEQDG---GGPDVFAHYSAIQANGYRELAEGQNVEFDVTQGAK 57

Query: 62 NGKYSAENLKLV 73
               A+N+ L+
Sbjct: 58 G--LQADNITLI 67


>gi|262200587|ref|YP_003271795.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
 gi|262083934|gb|ACY19902.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+   E  DDVF+H S +  +G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPD---EGSDDVFVHYSEIQGSGFRTLEENQRVEFEVGQGTK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|170725719|ref|YP_001759745.1| cold-shock DNA-binding domain-containing protein [Shewanella
          woodyi ATCC 51908]
 gi|169811066|gb|ACA85650.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
          51908]
          Length = 70

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI+ E     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 6  TGTVKWFNEEKGFGFISQE---NGGADVFVHFRAIASDGFKTLAEGQKVSFEVEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 LQAANVVAL 70


>gi|326202744|ref|ZP_08192612.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
          DSM 2782]
 gi|325987328|gb|EGD48156.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
          DSM 2782]
          Length = 66

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFIT +     G+DVF+H S++ S+G  +L EGQ V +D  +   
Sbjct: 1  MNTGIVKWFNAEKGFGFITVD----GGEDVFVHFSSIQSSGYKSLDEGQRVNFDIEKGQR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--LQATNV 63


>gi|254463779|ref|ZP_05077190.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
 gi|206684687|gb|EDZ45169.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
          Length = 68

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE       D+F+H SA+  AG+  L +GQ VT+D  ++  
Sbjct: 1  MANGTVKWFNSQKGFGFIAPEH---GSRDIFVHISALERAGIQQLDDGQAVTFDI-ESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESASNLAL 67


>gi|114563427|ref|YP_750940.1| cold-shock DNA-binding domain-containing protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114334720|gb|ABI72102.1| cold-shock DNA-binding protein family [Shewanella frigidimarina
          NCIMB 400]
 gi|149675688|dbj|BAF64723.1| cold shock protein [Shewanella livingstonensis]
          Length = 68

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G+DVF H S +   G   L  GQ V ++  +   
Sbjct: 1  MANGTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVCFEVEEGPK 57

Query: 62 NGKYSA 67
              SA
Sbjct: 58 GMHASA 63


>gi|288556391|ref|YP_003428326.1| cold-shock DNA-binding protein family protein [Bacillus
          pseudofirmus OF4]
 gi|288547551|gb|ADC51434.1| cold-shock DNA-binding protein family protein [Bacillus
          pseudofirmus OF4]
          Length = 66

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI      E GDDVF+H SA+   G  +L EGQ VT++  Q   
Sbjct: 1  MEQGTVKWFNAEKGFGFIE----IEGGDDVFVHFSAIQGEGFKSLDEGQKVTFETEQGQR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--LQAVNV 63


>gi|229084702|ref|ZP_04216967.1| Cold shock-like protein cspB [Bacillus cereus Rock3-44]
 gi|228698586|gb|EEL51306.1| Cold shock-like protein cspB [Bacillus cereus Rock3-44]
          Length = 65

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  DDVF+H SA+   G   L EGQ V++D V+ +  G
Sbjct: 2  QGKVKWFNNEKGFGFIE----IEGADDVFVHFSAIQGDGYKALEEGQEVSFDIVEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|146307418|ref|YP_001187883.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina ymp]
 gi|145575619|gb|ABP85151.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
          Length = 89

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G  E   D+F H SA+   G   L  GQ V ++ VQ   
Sbjct: 1  MLSGKVKWFNNAKGYGFILADGRDE---DLFAHYSAIQMDGYKTLKAGQPVRFEIVQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+  V
Sbjct: 58 G--LHAVNISAV 67


>gi|71726094|gb|AAZ39217.1| cold shock transcription regulator [Janthinobacterium lividum]
 gi|323530566|gb|ADX95748.1| cold shock-like protein CspD [Janthinobacterium sp. Ant5-2]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   E G+D+F H SA+ S G  +L E Q V+++      
Sbjct: 1  MATGIVKWFNDSKGFGFITPD---EGGEDLFAHFSAIQSNGFKSLQENQRVSFEVT-AGP 56

Query: 62 NGKYSAENLKLV 73
           GK  A N++ +
Sbjct: 57 KGKQ-ASNIQPI 67


>gi|146312144|ref|YP_001177218.1| cold-shock DNA-binding protein family protein [Enterobacter sp.
          638]
 gi|145319020|gb|ABP61167.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
          Length = 70

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFITP    +   DVF+H SA+ S+    L EGQ V +   +N A G
Sbjct: 6  TGLVKWFNSEKGFGFITP---ADGSKDVFVHFSAIQSSDYKTLDEGQKVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +A    L
Sbjct: 62 PAAANVTAL 70


>gi|15830399|ref|NP_309172.1| cold shock protein CspG [Escherichia coli O157:H7 str. Sakai]
 gi|16128956|ref|NP_415510.1| cold shock protein homolog, cold-inducible [Escherichia coli str.
          K-12 substr. MG1655]
 gi|26247008|ref|NP_753048.1| cold shock protein CspG [Escherichia coli CFT073]
 gi|74311547|ref|YP_309966.1| cold shock protein CspG [Shigella sonnei Ss046]
 gi|82544687|ref|YP_408634.1| cold shock protein CspG [Shigella boydii Sb227]
 gi|89107840|ref|AP_001620.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
          substr. W3110]
 gi|91210080|ref|YP_540066.1| cold shock protein CspG [Escherichia coli UTI89]
 gi|110641171|ref|YP_668901.1| cold shock protein CspG [Escherichia coli 536]
 gi|157157933|ref|YP_001462221.1| cold shock protein CspG [Escherichia coli E24377A]
 gi|157160508|ref|YP_001457826.1| cold shock protein CspG [Escherichia coli HS]
 gi|168747396|ref|ZP_02772418.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|168754310|ref|ZP_02779317.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|168763226|ref|ZP_02788233.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|168767487|ref|ZP_02792494.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|168773676|ref|ZP_02798683.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|168781006|ref|ZP_02806013.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|168787495|ref|ZP_02812502.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC869]
 gi|168800619|ref|ZP_02825626.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC508]
 gi|170020611|ref|YP_001725565.1| cold shock protein CspG [Escherichia coli ATCC 8739]
 gi|170080648|ref|YP_001729968.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
          substr. DH10B]
 gi|170683191|ref|YP_001744186.1| cold shock protein CspG [Escherichia coli SMS-3-5]
 gi|187730656|ref|YP_001880813.1| cold shock protein CspG [Shigella boydii CDC 3083-94]
 gi|188493174|ref|ZP_03000444.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|191166565|ref|ZP_03028394.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|191172438|ref|ZP_03033979.1| cold shock DNA-binding protein [Escherichia coli F11]
 gi|193066327|ref|ZP_03047377.1| cold shock DNA-binding protein [Escherichia coli E22]
 gi|193070805|ref|ZP_03051739.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194429832|ref|ZP_03062345.1| cold shock DNA-binding protein [Escherichia coli B171]
 gi|194432411|ref|ZP_03064698.1| cold shock DNA-binding protein [Shigella dysenteriae 1012]
 gi|194438072|ref|ZP_03070165.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|195935247|ref|ZP_03080629.1| cold shock protein CspG [Escherichia coli O157:H7 str. EC4024]
 gi|208806958|ref|ZP_03249295.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208814978|ref|ZP_03256157.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208822652|ref|ZP_03262971.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209398274|ref|YP_002269715.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4115]
 gi|209918242|ref|YP_002292326.1| cold shock protein CspG [Escherichia coli SE11]
 gi|215486106|ref|YP_002328537.1| cold shock protein CspG [Escherichia coli O127:H6 str. E2348/69]
 gi|217324361|ref|ZP_03440445.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          TW14588]
 gi|218553577|ref|YP_002386490.1| cold shock protein CspG [Escherichia coli IAI1]
 gi|218557881|ref|YP_002390794.1| cold shock protein CspG [Escherichia coli S88]
 gi|218688878|ref|YP_002397090.1| cold shock protein CspG [Escherichia coli ED1a]
 gi|218694525|ref|YP_002402192.1| cold shock protein CspG [Escherichia coli 55989]
 gi|218700498|ref|YP_002408127.1| cold shock protein CspG [Escherichia coli IAI39]
 gi|218704406|ref|YP_002411925.1| cold shock protein CspG [Escherichia coli UMN026]
 gi|227884058|ref|ZP_04001863.1| CspA family cold shock transcriptional regulator [Escherichia
          coli 83972]
 gi|237707032|ref|ZP_04537513.1| cold shock protein CspG [Escherichia sp. 3_2_53FAA]
 gi|238900249|ref|YP_002926045.1| DNA-binding transcriptional regulator [Escherichia coli BW2952]
 gi|253773981|ref|YP_003036812.1| cold shock protein CspG [Escherichia coli 'BL21-Gold(DE3)pLysS
          AG']
 gi|254161102|ref|YP_003044210.1| cold shock protein CspG [Escherichia coli B str. REL606]
 gi|254792247|ref|YP_003077084.1| cold shock protein CspG [Escherichia coli O157:H7 str. TW14359]
 gi|256018751|ref|ZP_05432616.1| cold shock protein CspG [Shigella sp. D9]
 gi|256023309|ref|ZP_05437174.1| cold shock protein CspG [Escherichia sp. 4_1_40B]
 gi|260843237|ref|YP_003221015.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O103:H2 str. 12009]
 gi|260854693|ref|YP_003228584.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O26:H11 str. 11368]
 gi|260867198|ref|YP_003233600.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O111:H- str. 11128]
 gi|261227159|ref|ZP_05941440.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7
          str. FRIK2000]
 gi|261255727|ref|ZP_05948260.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O157:H7 str. FRIK966]
 gi|291281988|ref|YP_003498806.1| Cold shock-like protein cspG [Escherichia coli O55:H7 str.
          CB9615]
 gi|293404283|ref|ZP_06648277.1| cold shock-like protein cspG [Escherichia coli FVEC1412]
 gi|293409367|ref|ZP_06652943.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293414265|ref|ZP_06656914.1| cold shock protein [Escherichia coli B185]
 gi|293433284|ref|ZP_06661712.1| cold shock-like protein CspC [Escherichia coli B088]
 gi|297519754|ref|ZP_06938140.1| cold shock protein CspG [Escherichia coli OP50]
 gi|298380066|ref|ZP_06989671.1| cold shock-like protein cspG [Escherichia coli FVEC1302]
 gi|300819431|ref|ZP_07099628.1| transcriptional repressor activity CueR [Escherichia coli MS
          107-1]
 gi|300823951|ref|ZP_07104074.1| transcriptional repressor activity CueR [Escherichia coli MS
          119-7]
 gi|300896362|ref|ZP_07114904.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300902844|ref|ZP_07120792.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300920966|ref|ZP_07137356.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300925325|ref|ZP_07141215.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|300929241|ref|ZP_07144720.1| transcriptional repressor activity CueR [Escherichia coli MS
          187-1]
 gi|300937663|ref|ZP_07152469.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|300949634|ref|ZP_07163620.1| transcriptional repressor activity CueR [Escherichia coli MS
          116-1]
 gi|300957866|ref|ZP_07170042.1| transcriptional repressor activity CueR [Escherichia coli MS
          175-1]
 gi|300978251|ref|ZP_07174199.1| transcriptional repressor activity CueR [Escherichia coli MS
          45-1]
 gi|300982793|ref|ZP_07176303.1| transcriptional repressor activity CueR [Escherichia coli MS
          200-1]
 gi|301022616|ref|ZP_07186487.1| transcriptional repressor activity CueR [Escherichia coli MS
          196-1]
 gi|301023111|ref|ZP_07186918.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|301047756|ref|ZP_07194812.1| transcriptional repressor activity CueR [Escherichia coli MS
          185-1]
 gi|301302393|ref|ZP_07208524.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|301327177|ref|ZP_07220443.1| transcriptional repressor activity CueR [Escherichia coli MS
          78-1]
 gi|301646375|ref|ZP_07246260.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|306812571|ref|ZP_07446764.1| cold shock protein CspG [Escherichia coli NC101]
 gi|307137622|ref|ZP_07496978.1| cold shock protein CspG [Escherichia coli H736]
 gi|307311625|ref|ZP_07591265.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|309795021|ref|ZP_07689441.1| transcriptional repressor activity CueR [Escherichia coli MS
          145-7]
 gi|312968952|ref|ZP_07783159.1| cold shock-like protein cspG [Escherichia coli 2362-75]
 gi|331641521|ref|ZP_08342656.1| conserved domain protein [Escherichia coli H736]
 gi|331646244|ref|ZP_08347347.1| conserved domain protein [Escherichia coli M605]
 gi|331652014|ref|ZP_08353033.1| conserved domain protein [Escherichia coli M718]
 gi|331657050|ref|ZP_08358012.1| conserved domain protein [Escherichia coli TA206]
 gi|331662397|ref|ZP_08363320.1| conserved domain protein [Escherichia coli TA143]
 gi|331667381|ref|ZP_08368245.1| conserved domain protein [Escherichia coli TA271]
 gi|331672524|ref|ZP_08373313.1| conserved domain protein [Escherichia coli TA280]
 gi|331676780|ref|ZP_08377476.1| conserved domain protein [Escherichia coli H591]
 gi|331682495|ref|ZP_08383114.1| conserved domain protein [Escherichia coli H299]
 gi|332279828|ref|ZP_08392241.1| cold shock protein CspG [Shigella sp. D9]
 gi|71154162|sp|P0A980|CSPG_ECO57 RecName: Full=Cold shock-like protein CspG; Short=CPS-G
 gi|71154163|sp|P0A979|CSPG_ECOL6 RecName: Full=Cold shock-like protein CspG; Short=CPS-G
 gi|71154164|sp|P0A978|CSPG_ECOLI RecName: Full=Cold shock-like protein CspG; Short=CPS-G
 gi|71154165|sp|P0A981|CSPG_SHIFL RecName: Full=Cold shock-like protein CspG; Short=CPS-G
 gi|26107408|gb|AAN79591.1|AE016758_195 Cold shock-like protein cspG [Escherichia coli CFT073]
 gi|1468921|dbj|BAA09669.1| cold shock potein CspG [Escherichia coli K-12]
 gi|2226344|gb|AAB61741.1| CspG [Escherichia coli str. K-12 substr. W3110]
 gi|2367114|gb|AAC74075.1| cold shock protein homolog, cold-inducible [Escherichia coli str.
          K-12 substr. MG1655]
 gi|4062549|dbj|BAA35756.1| DNA-binding transcriptional regulator [Escherichia coli str. K12
          substr. W3110]
 gi|13360605|dbj|BAB34568.1| cold shock-like protein CspG [Escherichia coli O157:H7 str.
          Sakai]
 gi|73855024|gb|AAZ87731.1| cold shock protein-like protein [Shigella sonnei Ss046]
 gi|81246098|gb|ABB66806.1| CspG [Shigella boydii Sb227]
 gi|91071654|gb|ABE06535.1| cold shock-like protein G [Escherichia coli UTI89]
 gi|110342763|gb|ABG69000.1| cold shock-like protein CspG [Escherichia coli 536]
 gi|157066188|gb|ABV05443.1| cold shock DNA-binding protein [Escherichia coli HS]
 gi|157079963|gb|ABV19671.1| cold shock DNA-binding protein [Escherichia coli E24377A]
 gi|169755539|gb|ACA78238.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|169888483|gb|ACB02190.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
          substr. DH10B]
 gi|170520909|gb|ACB19087.1| cold shock DNA-binding protein [Escherichia coli SMS-3-5]
 gi|187427648|gb|ACD06922.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94]
 gi|187770523|gb|EDU34367.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|188018100|gb|EDU56222.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|188488373|gb|EDU63476.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|189001168|gb|EDU70154.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189358364|gb|EDU76783.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189363259|gb|EDU81678.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189366600|gb|EDU85016.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|189372631|gb|EDU91047.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC869]
 gi|189377110|gb|EDU95526.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC508]
 gi|190903370|gb|EDV63090.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|190907322|gb|EDV66920.1| cold shock DNA-binding protein [Escherichia coli F11]
 gi|192926034|gb|EDV80678.1| cold shock DNA-binding protein [Escherichia coli E22]
 gi|192955916|gb|EDV86385.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194412114|gb|EDX28423.1| cold shock DNA-binding protein [Escherichia coli B171]
 gi|194419298|gb|EDX35380.1| cold shock DNA-binding protein [Shigella dysenteriae 1012]
 gi|194423008|gb|EDX39002.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|208726759|gb|EDZ76360.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208731626|gb|EDZ80314.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208738137|gb|EDZ85820.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209159674|gb|ACI37107.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4115]
 gi|209774128|gb|ACI85376.1| cold shock-like protein CspG [Escherichia coli]
 gi|209774130|gb|ACI85377.1| cold shock-like protein CspG [Escherichia coli]
 gi|209774132|gb|ACI85378.1| cold shock-like protein CspG [Escherichia coli]
 gi|209774134|gb|ACI85379.1| cold shock-like protein CspG [Escherichia coli]
 gi|209774136|gb|ACI85380.1| cold shock-like protein CspG [Escherichia coli]
 gi|209911501|dbj|BAG76575.1| cold shock-like protein [Escherichia coli SE11]
 gi|215264178|emb|CAS08522.1| DNA-binding transcriptional regulator [Escherichia coli O127:H6
          str. E2348/69]
 gi|217320582|gb|EEC29006.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          TW14588]
 gi|218351257|emb|CAU96961.1| DNA-binding transcriptional regulator [Escherichia coli 55989]
 gi|218360345|emb|CAQ97895.1| DNA-binding transcriptional regulator [Escherichia coli IAI1]
 gi|218364650|emb|CAR02336.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|218370484|emb|CAR18291.1| DNA-binding transcriptional regulator [Escherichia coli IAI39]
 gi|218426442|emb|CAR07268.1| DNA-binding transcriptional regulator [Escherichia coli ED1a]
 gi|218431503|emb|CAR12381.1| DNA-binding transcriptional regulator [Escherichia coli UMN026]
 gi|222032705|emb|CAP75444.1| Cold shock-like protein cspG [Escherichia coli LF82]
 gi|226898242|gb|EEH84501.1| cold shock protein CspG [Escherichia sp. 3_2_53FAA]
 gi|227838810|gb|EEJ49276.1| CspA family cold shock transcriptional regulator [Escherichia
          coli 83972]
 gi|238860954|gb|ACR62952.1| DNA-binding transcriptional regulator [Escherichia coli BW2952]
 gi|242376803|emb|CAQ31516.1| cold shock protein CspG [Escherichia coli BL21(DE3)]
 gi|253325025|gb|ACT29627.1| cold-shock DNA-binding domain protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253973003|gb|ACT38674.1| DNA-binding transcriptional regulator [Escherichia coli B str.
          REL606]
 gi|253977217|gb|ACT42887.1| DNA-binding transcriptional regulator [Escherichia coli
          BL21(DE3)]
 gi|254591647|gb|ACT71008.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7
          str. TW14359]
 gi|257753342|dbj|BAI24844.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O26:H11 str. 11368]
 gi|257758384|dbj|BAI29881.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O103:H2 str. 12009]
 gi|257763554|dbj|BAI35049.1| DNA-binding transcriptional regulator CspG [Escherichia coli
          O111:H- str. 11128]
 gi|260449865|gb|ACX40287.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|281178106|dbj|BAI54436.1| cold shock-like protein [Escherichia coli SE15]
 gi|284920825|emb|CBG33888.1| cold shock-like protein [Escherichia coli 042]
 gi|290761861|gb|ADD55822.1| Cold shock-like protein cspG [Escherichia coli O55:H7 str.
          CB9615]
 gi|291324103|gb|EFE63525.1| cold shock-like protein CspC [Escherichia coli B088]
 gi|291428869|gb|EFF01894.1| cold shock-like protein cspG [Escherichia coli FVEC1412]
 gi|291434323|gb|EFF07296.1| cold shock protein [Escherichia coli B185]
 gi|291469835|gb|EFF12319.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294493742|gb|ADE92498.1| cold shock DNA-binding protein [Escherichia coli IHE3034]
 gi|298279764|gb|EFI21272.1| cold shock-like protein cspG [Escherichia coli FVEC1302]
 gi|299881188|gb|EFI89399.1| transcriptional repressor activity CueR [Escherichia coli MS
          196-1]
 gi|300300365|gb|EFJ56750.1| transcriptional repressor activity CueR [Escherichia coli MS
          185-1]
 gi|300307058|gb|EFJ61578.1| transcriptional repressor activity CueR [Escherichia coli MS
          200-1]
 gi|300315437|gb|EFJ65221.1| transcriptional repressor activity CueR [Escherichia coli MS
          175-1]
 gi|300359773|gb|EFJ75643.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300397232|gb|EFJ80770.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|300405111|gb|EFJ88649.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300409716|gb|EFJ93254.1| transcriptional repressor activity CueR [Escherichia coli MS
          45-1]
 gi|300412086|gb|EFJ95396.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300418547|gb|EFK01858.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|300450965|gb|EFK14585.1| transcriptional repressor activity CueR [Escherichia coli MS
          116-1]
 gi|300457311|gb|EFK20804.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|300462807|gb|EFK26300.1| transcriptional repressor activity CueR [Escherichia coli MS
          187-1]
 gi|300523583|gb|EFK44652.1| transcriptional repressor activity CueR [Escherichia coli MS
          119-7]
 gi|300528027|gb|EFK49089.1| transcriptional repressor activity CueR [Escherichia coli MS
          107-1]
 gi|300842232|gb|EFK69992.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|300846210|gb|EFK73970.1| transcriptional repressor activity CueR [Escherichia coli MS
          78-1]
 gi|301075411|gb|EFK90217.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|305853334|gb|EFM53773.1| cold shock protein CspG [Escherichia coli NC101]
 gi|306908180|gb|EFN38679.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|307552814|gb|ADN45589.1| cold shock-like protein CspG [Escherichia coli ABU 83972]
 gi|307627598|gb|ADN71902.1| cold shock protein CspG [Escherichia coli UM146]
 gi|308121325|gb|EFO58587.1| transcriptional repressor activity CueR [Escherichia coli MS
          145-7]
 gi|309701267|emb|CBJ00567.1| cold shock-like protein [Escherichia coli ETEC H10407]
 gi|312286354|gb|EFR14267.1| cold shock-like protein cspG [Escherichia coli 2362-75]
 gi|312945495|gb|ADR26322.1| cold shock protein CspG [Escherichia coli O83:H1 str. NRG 857C]
 gi|315060274|gb|ADT74601.1| DNA-binding transcriptional regulator [Escherichia coli W]
 gi|315135640|dbj|BAJ42799.1| cold shock-like protein cspG [Escherichia coli DH1]
 gi|315258037|gb|EFU38005.1| transcriptional repressor activity CueR [Escherichia coli MS
          85-1]
 gi|315287611|gb|EFU47017.1| transcriptional repressor activity CueR [Escherichia coli MS
          110-3]
 gi|315291158|gb|EFU50521.1| transcriptional repressor activity CueR [Escherichia coli MS
          153-1]
 gi|315296282|gb|EFU55588.1| transcriptional repressor activity CueR [Escherichia coli MS
          16-3]
 gi|320175185|gb|EFW50295.1| Cold shock protein CspG [Shigella dysenteriae CDC 74-1112]
 gi|320178568|gb|EFW53533.1| Cold shock protein CspG [Shigella boydii ATCC 9905]
 gi|320187200|gb|EFW61901.1| Cold shock protein CspG [Shigella flexneri CDC 796-83]
 gi|320192513|gb|EFW67155.1| Cold shock protein CspG [Escherichia coli O157:H7 str. EC1212]
 gi|320196522|gb|EFW71145.1| Cold shock protein CspG [Escherichia coli WV_060327]
 gi|320200218|gb|EFW74806.1| Cold shock protein CspG [Escherichia coli EC4100B]
 gi|320637857|gb|EFX07649.1| cold shock protein CspG [Escherichia coli O157:H7 str. G5101]
 gi|320642982|gb|EFX12183.1| cold shock protein CspG [Escherichia coli O157:H- str. 493-89]
 gi|320648439|gb|EFX17094.1| cold shock protein CspG [Escherichia coli O157:H- str. H 2687]
 gi|320653756|gb|EFX21830.1| cold shock protein CspG [Escherichia coli O55:H7 str. 3256-97 TW
          07815]
 gi|320659598|gb|EFX27161.1| cold shock protein CspG [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664369|gb|EFX31520.1| cold shock protein CspG [Escherichia coli O157:H7 str. LSU-61]
 gi|323157489|gb|EFZ43599.1| cold shock-like protein cspG [Escherichia coli EPECa14]
 gi|323158184|gb|EFZ44278.1| cold shock-like protein cspG [Escherichia coli E128010]
 gi|323165477|gb|EFZ51264.1| cold shock-like protein cspG [Shigella sonnei 53G]
 gi|323174903|gb|EFZ60518.1| cold shock-like protein cspG [Escherichia coli LT-68]
 gi|323175877|gb|EFZ61471.1| cold shock-like protein cspG [Escherichia coli 1180]
 gi|323185302|gb|EFZ70666.1| cold shock-like protein cspG [Escherichia coli 1357]
 gi|323379166|gb|ADX51434.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323938094|gb|EGB34356.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1520]
 gi|323942904|gb|EGB39069.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323947221|gb|EGB43229.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323953315|gb|EGB49181.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H252]
 gi|323958282|gb|EGB53991.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H263]
 gi|323962875|gb|EGB58450.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H489]
 gi|323967237|gb|EGB62661.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli M863]
 gi|323973135|gb|EGB68327.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|323976631|gb|EGB71719.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TW10509]
 gi|324009920|gb|EGB79139.1| transcriptional repressor activity CueR [Escherichia coli MS
          57-2]
 gi|324013378|gb|EGB82597.1| transcriptional repressor activity CueR [Escherichia coli MS
          60-1]
 gi|324019120|gb|EGB88339.1| transcriptional repressor activity CueR [Escherichia coli MS
          117-3]
 gi|324117147|gb|EGC11055.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1167]
 gi|326338568|gb|EGD62395.1| Cold shock protein CspG [Escherichia coli O157:H7 str. 1125]
 gi|326347791|gb|EGD71507.1| Cold shock protein CspG [Escherichia coli O157:H7 str. 1044]
 gi|327253387|gb|EGE65025.1| cold shock-like protein cspG [Escherichia coli STEC_7v]
 gi|330910756|gb|EGH39266.1| cold shock protein CspG [Escherichia coli AA86]
 gi|331038319|gb|EGI10539.1| conserved domain protein [Escherichia coli H736]
 gi|331044996|gb|EGI17123.1| conserved domain protein [Escherichia coli M605]
 gi|331050292|gb|EGI22350.1| conserved domain protein [Escherichia coli M718]
 gi|331055298|gb|EGI27307.1| conserved domain protein [Escherichia coli TA206]
 gi|331060819|gb|EGI32783.1| conserved domain protein [Escherichia coli TA143]
 gi|331064966|gb|EGI36861.1| conserved domain protein [Escherichia coli TA271]
 gi|331070167|gb|EGI41533.1| conserved domain protein [Escherichia coli TA280]
 gi|331075469|gb|EGI46767.1| conserved domain protein [Escherichia coli H591]
 gi|331080126|gb|EGI51305.1| conserved domain protein [Escherichia coli H299]
 gi|332092462|gb|EGI97535.1| cold shock-like protein cspG [Shigella boydii 5216-82]
 gi|332093343|gb|EGI98401.1| cold shock-like protein cspG [Shigella boydii 3594-74]
 gi|332095879|gb|EGJ00886.1| cold shock-like protein cspG [Shigella dysenteriae 155-74]
 gi|332102180|gb|EGJ05526.1| cold shock protein CspG [Shigella sp. D9]
 gi|332342432|gb|AEE55766.1| cold shock-like protein CspG [Escherichia coli UMNK88]
          Length = 70

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H +A+ S     L E Q V +   Q    G
Sbjct: 6  TGLVKWFNADKGFGFITPD---DGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQ-RG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVVTL 70


>gi|296271250|ref|YP_003653882.1| cold-shock DNA-binding domain-containing protein [Thermobispora
          bispora DSM 43833]
 gi|296094037|gb|ADG89989.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM
          43833]
          Length = 66

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW++ +KGYGFI  +     G DVF+H +A+   G  +L +GQ V +D  +   
Sbjct: 1  MAQGTVKWFDAEKGYGFIAVD----GGKDVFVHYTAILMDGFKSLEQGQRVEFDITEGRK 56

Query: 62 NGKYSAE 68
            +  A 
Sbjct: 57 GPQAEAV 63


>gi|224824762|ref|ZP_03697869.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
 gi|224603255|gb|EEG09431.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   E G+D+F H SA+ + G  +L EGQ V++D V N  
Sbjct: 1  MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINTQGFKSLKEGQRVSFDVV-NGP 56

Query: 62 NGKYSAENLK 71
           GK  A N++
Sbjct: 57 KGKQ-ASNIQ 65


>gi|170690994|ref|ZP_02882160.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
 gi|307726662|ref|YP_003909875.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1003]
 gi|323529135|ref|YP_004231287.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1001]
 gi|170144243|gb|EDT12405.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
 gi|307587187|gb|ADN60584.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
 gi|323386137|gb|ADX58227.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H S V  +G  +L E Q V+++  Q   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEVQGSGFKSLQENQKVSFEVKQG-P 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|108763112|ref|YP_629869.1| cold-shock protein CspA [Myxococcus xanthus DK 1622]
 gi|4193390|gb|AAD10033.1| CspA [Myxococcus xanthus]
 gi|108466992|gb|ABF92177.1| cold-shock protein CspA [Myxococcus xanthus DK 1622]
          Length = 68

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +   + G DVF H +A+ + G   L EGQ V ++  +   
Sbjct: 1  MATGTVKWFNDAKGFGFIAQD---DGGADVFCHHTAIQTDGFRTLAEGQKVEFETRKGPK 57

Query: 62 NGKYSAENLKLV 73
               AEN+++V
Sbjct: 58 G--LQAENVRVV 67


>gi|126461377|ref|YP_001042491.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|126103041|gb|ABN75719.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
          ATCC 17029]
          Length = 68

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G      DVF+H +A+  AG+  L +GQ V++D  + D 
Sbjct: 1  MANGTVKWFNATKGFGFIAPAG---GSKDVFVHVTALERAGIRQLDDGQAVSFDL-ERDR 56

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67


>gi|239617864|ref|YP_002941186.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
          19.5.1]
 gi|239506695|gb|ACR80182.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
          19.5.1]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KGYGFIT     + G D+F+H SA+   G   L EGQ V ++  +    G
Sbjct: 2  KGTVKWFSGKKGYGFIT----MDDGGDIFVHFSAIEMDGYKTLNEGQRVEFEIEEG-PKG 56

Query: 64 KYSAENLKLVP 74
          +  A  ++++ 
Sbjct: 57 RPQAAKVRVIE 67


>gi|184156018|ref|YP_001844358.1| cold shock protein [Lactobacillus fermentum IFO 3956]
 gi|260662726|ref|ZP_05863620.1| cold shock protein [Lactobacillus fermentum 28-3-CHN]
 gi|183227362|dbj|BAG27878.1| cold shock protein [Lactobacillus fermentum IFO 3956]
 gi|260552807|gb|EEX25806.1| cold shock protein [Lactobacillus fermentum 28-3-CHN]
          Length = 66

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G+IKW+N +KGYGFI+ E     GDDVF+H SA+   G   L EGQ VT+D V+   
Sbjct: 1  MEKGTIKWFNDEKGYGFISREA----GDDVFVHFSAIQGDGFKTLEEGQSVTFD-VETGD 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGLQAANV 63


>gi|330503289|ref|YP_004380158.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina NK-01]
 gi|328917575|gb|AEB58406.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina NK-01]
          Length = 95

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G  E   D+F H SA+   G   L  GQ V ++ VQ   
Sbjct: 7  MLSGKVKWFNNAKGYGFILADGRDE---DLFAHYSAIQMDGYKTLKAGQPVRFEIVQGPK 63

Query: 62 NGKYSAENLKLVPKSSN 78
               A N+     + +
Sbjct: 64 G--LHAVNISAASATQD 78


>gi|326510343|dbj|BAJ87388.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 192

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI+PE   +  DD+F+H+SA+ + G  +L E  +V +D +  D +G
Sbjct: 6  KGTVKWFNVTKGFGFISPE---DGSDDLFVHQSAIKADGYRSLNENDVVEFDVITGD-DG 61

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 62 RTKASDVT 69


>gi|254418771|ref|ZP_05032495.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
          BAL3]
 gi|196184948|gb|EDX79924.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
          BAL3]
          Length = 70

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KWYNP KGYGFI P+   + G DVF+H SAV ++ + +L EGQ ++Y+  ++  
Sbjct: 1  MATGTVKWYNPTKGYGFIAPD---DGGKDVFVHASAVETSSVGSLNEGQKISYEIERDSR 57

Query: 62 NGKYSAENLK 71
          +GK SA  L 
Sbjct: 58 SGKESAGRLT 67


>gi|134097136|ref|YP_001102797.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|291009809|ref|ZP_06567782.1| cold shock protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133909759|emb|CAL99871.1| cold-shock DNA-binding domain protein [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI     T+ G DVF+H SA+  +G   L EG  V ++ V+   
Sbjct: 1  MAVGTVKWFNSEKGYGFIA----TDGGSDVFVHYSAINMSGFRTLAEGDRVEFE-VKAGR 55

Query: 62 NGKYSAENLKLV 73
          +G+  A+ ++ +
Sbjct: 56 DGRSQADGVRKL 67


>gi|312200656|ref|YP_004020717.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
 gi|311231992|gb|ADP84847.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ +G    G DVF+H SA+   G  +L EGQ V +   Q   
Sbjct: 1  MAQGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIDMDGYKSLEEGQRVEFQVTQGQK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|256380782|ref|YP_003104442.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
 gi|255925085|gb|ACU40596.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI     +  G DVF+H S +   G   L E Q V ++  Q   
Sbjct: 1  MAEGTVKWFNAEKGYGFIAQ---SNGGPDVFVHYSEIQGNGFRTLEENQRVEFEIGQGTK 57

Query: 62 NGKYSAENLK 71
               A+N++
Sbjct: 58 G--PQAQNVR 65


>gi|218294620|ref|ZP_03495474.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23]
 gi|218244528|gb|EED11052.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23]
          Length = 73

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI  EG T    DVF+H SA+ + G   L EG +VT++      
Sbjct: 1  MQKGRVKWFNAEKGYGFIEREGDT----DVFVHFSAINAKGFRTLNEGDIVTFEVEPGKN 56

Query: 62 NGKYSAENLKLVPKS 76
               A N+ +V  +
Sbjct: 57 GKGPQAVNVTVVEPA 71


>gi|85717084|ref|ZP_01048045.1| cold shock protein [Nitrobacter sp. Nb-311A]
 gi|85696122|gb|EAQ34019.1| cold shock protein [Nitrobacter sp. Nb-311A]
          Length = 70

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI PE     G DVF+H SAV  AG  +L EG  V+Y+ V N   GK
Sbjct: 7  GTVKWFNGQKGYGFIEPES---GGKDVFVHISAVEKAGFTSLAEGAKVSYEVVMN--RGK 61

Query: 65 YSAENLKL 72
           SAENL++
Sbjct: 62 ESAENLRI 69


>gi|152977400|ref|YP_001376917.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152026152|gb|ABS23922.1| putative cold-shock DNA-binding domain protein [Bacillus
          cytotoxicus NVH 391-98]
          Length = 65

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  E     GDD+F+H SA+   G   L EGQ V +D V + A G
Sbjct: 2  QGRVKWFNAEKGFGFIERE----DGDDIFVHFSAIQQEGYKTLEEGQNVEFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 57 PQAVNVVKL 65


>gi|170785227|pdb|3CAM|A Chain A, Crystal Structure Of The Cold Shock Domain Protein From
          Neisseria Meningitidis
 gi|170785228|pdb|3CAM|B Chain B, Crystal Structure Of The Cold Shock Domain Protein From
          Neisseria Meningitidis
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V++D       G
Sbjct: 3  TGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINXEGFKTLKEGQRVSFDVT-TGPKG 58

Query: 64 KYSAE 68
          K +A 
Sbjct: 59 KQAAN 63


>gi|115375364|ref|ZP_01462627.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310819145|ref|YP_003951503.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1]
 gi|115367648|gb|EAU66620.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392217|gb|ADO69676.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +G    G+D+F H +A+ + G  +L EGQ V +D  +   
Sbjct: 1  MATGTVKWFNDAKGFGFITQDG---GGEDLFCHHTAIQTQGFRSLQEGQKVEFDVARGPK 57

Query: 62 NGKYSAENLKLV 73
               A+N++ V
Sbjct: 58 G--LQAQNVRPV 67


>gi|260576175|ref|ZP_05844168.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
 gi|259021655|gb|EEW24958.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
          Length = 68

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P        DVF+H SA+  AG+  L +GQ VT+D  ++  
Sbjct: 1  MANGTVKWFNATKGFGFIAP---ANGNKDVFVHVSAMERAGIRQLDDGQAVTFDI-ESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESAINLAL 67


>gi|323487951|ref|ZP_08093207.1| cold shock protein [Planococcus donghaensis MPA1U2]
 gi|323398375|gb|EGA91165.1| cold shock protein [Planococcus donghaensis MPA1U2]
          Length = 66

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  E     GDDVF+H SA+ S G  +L EGQ VT+D  Q   
Sbjct: 1  MEQGKVKWFNSEKGFGFIERE----GGDDVFVHFSAIQSEGFKSLDEGQEVTFDIEQGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--LQATNVQ 64


>gi|323529334|ref|YP_004231486.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1001]
 gi|323386336|gb|ADX58426.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S + + G   L E Q V+++  Q   
Sbjct: 1  MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRADGFKTLAENQKVSFETKQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 58 G--LQAANIKPL 67


>gi|254389689|ref|ZP_05004914.1| cold shock protein scoF [Streptomyces clavuligerus ATCC 27064]
 gi|326445343|ref|ZP_08220077.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
 gi|197703401|gb|EDY49213.1| cold shock protein scoF [Streptomyces clavuligerus ATCC 27064]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S + S+G   L EGQ VT+D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSNINSSGYRELQEGQAVTFDITQGQK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENIT 65


>gi|325274567|ref|ZP_08140625.1| cold-shock protein [Pseudomonas sp. TJI-51]
 gi|324100294|gb|EGB98082.1| cold-shock protein [Pseudomonas sp. TJI-51]
          Length = 197

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  +  D   
Sbjct: 131 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 185

Query: 64  KYSAENLKLV 73
              AE++  V
Sbjct: 186 -LQAEDVVAV 194


>gi|269139554|ref|YP_003296255.1| cold shock protein [Edwardsiella tarda EIB202]
 gi|267985215|gb|ACY85044.1| cold shock protein [Edwardsiella tarda EIB202]
 gi|304559442|gb|ADM42106.1| Cold shock protein CspD [Edwardsiella tarda FL6-60]
          Length = 73

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P      GDD+F H +A+   G   L  GQ V +D      
Sbjct: 1  METGTVKWFNNAKGFGFICP---ASGGDDIFAHYTAIQMEGYRTLKAGQQVQFDLHIGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|229032524|ref|ZP_04188490.1| Cold shock protein cspB [Bacillus cereus AH1271]
 gi|229099341|ref|ZP_04230272.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|229105500|ref|ZP_04236141.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|229118352|ref|ZP_04247708.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|228665182|gb|EEL20668.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|228677925|gb|EEL32161.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|228684159|gb|EEL38106.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|228728782|gb|EEL79792.1| Cold shock protein cspB [Bacillus cereus AH1271]
          Length = 66

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ V+++ V+ + 
Sbjct: 1  MQTGKVKWFNGEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|167035202|ref|YP_001670433.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166861690|gb|ABZ00098.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
          Length = 197

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  +  D   
Sbjct: 131 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 185

Query: 64  KYSAENLKLV 73
              AE++  V
Sbjct: 186 -LQAEDVVAV 194


>gi|115373612|ref|ZP_01460907.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310824928|ref|YP_003957286.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1]
 gi|115369315|gb|EAU68255.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398000|gb|ADO75459.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +G+   G+D+F H SA+ + G  +L EGQ V +D  +   
Sbjct: 1  MANGTVKWFNDAKGFGFITQDGA---GEDLFCHHSAIQADGFRSLQEGQKVQFDVARGPK 57

Query: 62 NGKYSAENLKLV 73
               A+N++ V
Sbjct: 58 G--LQAQNVRPV 67


>gi|119961765|ref|YP_946790.1| cold shock protein [Arthrobacter aurescens TC1]
 gi|119948624|gb|ABM07535.1| putative cold shock protein [Arthrobacter aurescens TC1]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFIT +   ESGDDVF+H SA+   G   L EGQ V ++  +   
Sbjct: 1  MALGTVKWFNAEKGYGFITVD---ESGDDVFVHWSAIQMDGFRALEEGQRVEFELGEGQK 57

Query: 62 NGKYSAENLKL 72
               AE +++
Sbjct: 58 G--PQAEGVRV 66


>gi|15675836|ref|NP_270010.1| putative cold shock protein [Streptococcus pyogenes M1 GAS]
 gi|19746951|ref|NP_608087.1| cold shock protein [Streptococcus pyogenes MGAS8232]
 gi|21911305|ref|NP_665573.1| putative cold-shock protein [Streptococcus pyogenes MGAS315]
 gi|61221535|sp|P0A360|CSPA_STRP3 RecName: Full=Major cold shock protein
 gi|61221536|sp|P0A361|CSPA_STRP8 RecName: Full=Major cold shock protein
 gi|81175243|sp|P0C0F1|CSPA_STRP1 RecName: Full=Major cold shock protein
 gi|13623066|gb|AAK34731.1| putative cold shock protein [Streptococcus pyogenes M1 GAS]
 gi|19749202|gb|AAL98586.1| putative cold shock protein [Streptococcus pyogenes MGAS8232]
 gi|21905519|gb|AAM80376.1| putative cold-shock protein [Streptococcus pyogenes MGAS315]
          Length = 67

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI    STE+G DVF H SA+ + G   L EGQ V +D  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--PQAVNITKL 66


>gi|229096187|ref|ZP_04227160.1| Cold shock-like protein cspB [Bacillus cereus Rock3-29]
 gi|229115142|ref|ZP_04244552.1| Cold shock-like protein cspB [Bacillus cereus Rock1-3]
 gi|228668282|gb|EEL23714.1| Cold shock-like protein cspB [Bacillus cereus Rock1-3]
 gi|228687147|gb|EEL41052.1| Cold shock-like protein cspB [Bacillus cereus Rock3-29]
          Length = 65

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  +G+    DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIEMDGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|34499122|ref|NP_903337.1| cold shock transcription regulator protein [Chromobacterium
          violaceum ATCC 12472]
 gi|34104973|gb|AAQ61329.1| cold shock transcription regulator protein [Chromobacterium
          violaceum ATCC 12472]
          Length = 67

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E G+D+F H SA+   G   L EGQ V+++ V +  
Sbjct: 1  MAFGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEVV-SGP 56

Query: 62 NGKYSAENLK 71
           GK  A N++
Sbjct: 57 KGKQ-ASNIQ 65


>gi|296268070|ref|YP_003650702.1| cold-shock DNA-binding domain-containing protein [Thermobispora
          bispora DSM 43833]
 gi|296090857|gb|ADG86809.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM
          43833]
          Length = 67

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NPDKG+GFI P+G      DVF+H SA+  +G  NL +GQ V +D V +  
Sbjct: 1  MAQGTVKWFNPDKGFGFIAPDGGE---PDVFVHFSAIIGSGYRNLEDGQRVEFDIVSSPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--PQASNVR 65


>gi|284045400|ref|YP_003395740.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
 gi|283949621|gb|ADB52365.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
          Length = 67

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFITP+  +    D+F+H SA+   G  +L EG  V+YD  Q   
Sbjct: 1  MATGTVKWFNDDKGFGFITPDDQS---KDLFVHHSAITGDGFKSLAEGAKVSYDAEQG-P 56

Query: 62 NGKYSAENLKL 72
           G  +A    +
Sbjct: 57 KGPNAANVTTI 67


>gi|59714277|ref|YP_207052.1| DNA-binding transcriptional regulator [Vibrio fischeri ES114]
 gi|197337532|ref|YP_002158749.1| hypothetical protein VFMJ11_A1204 [Vibrio fischeri MJ11]
 gi|59482525|gb|AAW88164.1| DNA-binding transcriptional regulator [Vibrio fischeri ES114]
 gi|197314784|gb|ACH64233.1| conserved domain protein [Vibrio fischeri MJ11]
          Length = 69

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 5  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PQAANVVAL 69


>gi|40363759|dbj|BAD06324.1| putative glycine-rich protein [Triticum aestivum]
 gi|42391853|dbj|BAD08700.1| cold shock domain protein 2 [Triticum aestivum]
          Length = 205

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI+PE   +  +D+F+H+SA+ + G  +L E  +V ++ +  D +G
Sbjct: 6  KGTVKWFNVTKGFGFISPE---DGSEDLFVHQSAIKADGYRSLNENDVVEFEVITGD-DG 61

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 62 RTKATDVT 69


>gi|146309833|ref|YP_001174907.1| major cold shock protein [Enterobacter sp. 638]
 gi|261341820|ref|ZP_05969678.1| hypothetical protein ENTCAN_08306 [Enterobacter cancerogenus ATCC
          35316]
 gi|145316709|gb|ABP58856.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
 gi|288316195|gb|EFC55133.1| putative cold shock protein [Enterobacter cancerogenus ATCC
          35316]
          Length = 70

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H SA+ + G  +L EGQ V++   ++ A G
Sbjct: 6  TGLVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNEGYKSLDEGQKVSFTI-ESGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PAAGNVVSL 70


>gi|78043760|ref|YP_359027.1| cold shock protein CspC [Carboxydothermus hydrogenoformans
          Z-2901]
 gi|77995875|gb|ABB14774.1| cold shock protein CspC [Carboxydothermus hydrogenoformans
          Z-2901]
          Length = 65

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KGYGFI  E     G DVF+H SA+   G   L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFDPKKGYGFIERE----DGGDVFVHFSAIQEKGFKTLEEGQRVEFEIVEG-ARG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|329851859|ref|ZP_08266540.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
 gi|328839708|gb|EGF89281.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
          Length = 67

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P   +  G+DVF+H SAV  AGL  L +GQ V+Y+    + 
Sbjct: 1  MAEGTVKWFNSTKGFGFIQP---SSGGNDVFVHISAVQRAGLQGLADGQKVSYEL--QNE 55

Query: 62 NGKYSAENLKLV 73
           GK +A ++KL+
Sbjct: 56 RGKTAAVDIKLL 67


>gi|261251826|ref|ZP_05944400.1| cold shock protein CspA [Vibrio orientalis CIP 102891]
 gi|260938699|gb|EEX94687.1| cold shock protein CspA [Vibrio orientalis CIP 102891]
          Length = 70

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFITPE     G DVF+H  A+ S G   L EGQ V+++  Q    G
Sbjct: 6  TGIVKWFNEEKGFGFITPE---NGGADVFVHFRAITSDGFKTLKEGQQVSFEVEQGQ-KG 61

Query: 64 KYSAENL 70
            +A  +
Sbjct: 62 PQAANVV 68


>gi|167756812|ref|ZP_02428939.1| hypothetical protein CLORAM_02361 [Clostridium ramosum DSM 1402]
 gi|237734529|ref|ZP_04565010.1| cold shock protein [Mollicutes bacterium D7]
 gi|167702987|gb|EDS17566.1| hypothetical protein CLORAM_02361 [Clostridium ramosum DSM 1402]
 gi|229382349|gb|EEO32440.1| cold shock protein [Coprobacillus sp. D7]
          Length = 66

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFIT +     G D+F+H SA+  +G  +L EG  V++D V++D 
Sbjct: 1  MNTGTVKWFNSEKGFGFITKDT----GGDLFVHFSAIQGSGFKSLEEGAKVSFDIVESDR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--EQAANVAAL 66


>gi|260904248|ref|ZP_05912570.1| cold-shock DNA-binding domain protein [Brevibacterium linens BL2]
          Length = 67

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFIT EG+     DVF+H SA+   G   L EGQ V ++  +   
Sbjct: 1  MAQGTVKWFNAEKGYGFITLEGNN---QDVFVHWSAIQMDGYRALEEGQQVEFEVGEGQK 57

Query: 62 NGKYSAENLKLV 73
               AE++ L+
Sbjct: 58 G--PQAESVTLL 67


>gi|71737155|ref|YP_275269.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. phaseolicola 1448A]
 gi|71557708|gb|AAZ36919.1| cold shock domain protein CspD [Pseudomonas syringae pv.
          phaseolicola 1448A]
          Length = 94

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G  +  DD+F H S +   G   L  GQ V+++ +Q   
Sbjct: 3  MLNGKVKWFNNAKGYGFIIKDGKPD--DDLFAHFSTIQMEGYKTLKAGQPVSFEIIQGPK 60

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 61 G--LHAVNIAPL 70


>gi|154251388|ref|YP_001412212.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
          lavamentivorans DS-1]
 gi|154155338|gb|ABS62555.1| putative cold-shock DNA-binding domain protein [Parvibaculum
          lavamentivorans DS-1]
          Length = 68

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI P    + G D+F+H SAV  AG  +L EGQ + Y+ V+   
Sbjct: 1  MASGVVKWFNATKGYGFIAP---ADGGKDIFVHISAVERAGQKSLQEGQQIQYELVEG-R 56

Query: 62 NGKYSAENLKL 72
          NG++SAENL L
Sbjct: 57 NGRFSAENLVL 67


>gi|116326593|ref|YP_796514.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
          subsp. cremoris SK11]
 gi|190571792|ref|YP_001966471.1| CSPD [Lactococcus lactis]
 gi|281491666|ref|YP_003353646.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|76574948|gb|ABA47417.1| cold shock protein D [Lactococcus lactis]
 gi|108736191|gb|ABG00320.1| CSPD [Lactococcus lactis]
 gi|116108961|gb|ABJ74083.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
          cremoris SK11]
 gi|281375384|gb|ADA64897.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
          Length = 66

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT    +E G D+F H SA+ S G   L EGQ V +D  +   
Sbjct: 1  MANGTVKWFNADKGFGFIT----SEEGKDLFAHFSAIQSDGFKTLDEGQKVEFDVEEGQR 56

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 57 G--PQAVNIT 64


>gi|323356496|ref|YP_004222892.1| cold shock proteins [Microbacterium testaceum StLB037]
 gi|323272867|dbj|BAJ73012.1| cold shock proteins [Microbacterium testaceum StLB037]
          Length = 67

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI P+   +   D+F H SA+   G   LTE Q V +D  Q   
Sbjct: 1  MATGTVKWFNSEKGYGFIAPD---DGSADLFAHFSAIQGNGFKELTEAQKVEFDAEQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--MQAANIRPL 67


>gi|255545420|ref|XP_002513770.1| cold shock protein, putative [Ricinus communis]
 gi|223546856|gb|EEF48353.1| cold shock protein, putative [Ricinus communis]
          Length = 184

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 43/66 (65%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KG+GFI P+   + G+D+F+H++++ S G   L+EGQ V +  V    +G+
Sbjct: 9  GTVKWFSAQKGFGFIAPD---DGGEDLFVHQTSIQSDGFRTLSEGQPVEFS-VDFGEDGR 64

Query: 65 YSAENL 70
            A ++
Sbjct: 65 TKAVDV 70


>gi|257095586|ref|YP_003169227.1| cold-shock DNA-binding domain-containing protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048110|gb|ACV37298.1| cold-shock DNA-binding domain protein [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 67

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  +D+F H SA+   G   L EG+ V++D  Q   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---DGSEDLFAHFSAITMGGFKTLKEGEKVSFDVTQG-P 56

Query: 62 NGKYSAE 68
           GK ++ 
Sbjct: 57 KGKQASN 63


>gi|119898412|ref|YP_933625.1| cold shock-like protein [Azoarcus sp. BH72]
 gi|119670825|emb|CAL94738.1| cold shock-like protein [Azoarcus sp. BH72]
          Length = 69

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G++KW+N  KG+GFITPE     GDD+F H S + S+G  +L E Q V ++ V++   
Sbjct: 4  QTGTVKWFNDAKGFGFITPE---NGGDDLFAHFSEIQSSGFKSLAENQRVEFE-VKSGPK 59

Query: 63 GKYSA 67
          G  +A
Sbjct: 60 GLQAA 64


>gi|327440809|dbj|BAK17174.1| cold shock protein [Solibacillus silvestris StLB046]
          Length = 66

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E     G DVF H SA+   G   L EGQ V +  V++  
Sbjct: 1  MTQGTVKWFNSEKGFGFIEVE----GGSDVFAHFSAIQGDGFKTLEEGQKVEFS-VEDGQ 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 RGPQATNIVKL 66


>gi|325261145|ref|ZP_08127883.1| conserved domain protein [Clostridium sp. D5]
 gi|324032599|gb|EGB93876.1| conserved domain protein [Clostridium sp. D5]
          Length = 67

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFIT +    +G+DVF+H S +AS G  +L EGQ V++D  + + 
Sbjct: 1  MNNGTVKWFNAQKGFGFITNDA---NGEDVFVHFSGIASDGYKSLEEGQKVSFDITEGNR 57

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 58 G--PQAVNV 64


>gi|295677819|ref|YP_003606343.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|295437662|gb|ADG16832.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
          Length = 67

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+G    G+D+F H S +   G   L E Q VT++ V+   
Sbjct: 1  METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRVDGFKTLQENQKVTFE-VKTGP 56

Query: 62 NGKYSAENLKLV 73
           GK +A N+K V
Sbjct: 57 KGKQAA-NIKPV 67


>gi|257485426|ref|ZP_05639467.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. tabaci ATCC 11528]
 gi|289625414|ref|ZP_06458368.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. aesculi str. NCPPB3681]
 gi|289649303|ref|ZP_06480646.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. aesculi str. 2250]
 gi|298487538|ref|ZP_07005580.1| Cold shock-like protein cspD [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|298157922|gb|EFH99000.1| Cold shock-like protein cspD [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|330866849|gb|EGH01558.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. aesculi str. 0893_23]
 gi|330889670|gb|EGH22331.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. mori str. 301020]
          Length = 94

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G  +  DD+F H S +   G   L  GQ V+++ +Q   
Sbjct: 3  MLNGKVKWFNNAKGYGFIIEDGKPD--DDLFAHFSTIQMEGYKTLKAGQPVSFEIIQGPK 60

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 61 G--LHAVNIAPL 70


>gi|20808157|ref|NP_623328.1| cold shock proteins [Thermoanaerobacter tengcongensis MB4]
 gi|20516747|gb|AAM24932.1| Cold shock proteins [Thermoanaerobacter tengcongensis MB4]
          Length = 66

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KGYGFI  E     G DVF+H SA+   G   L EGQ V ++ VQ  A
Sbjct: 1  MVRGKVKWFNAEKGYGFIERE----DGTDVFVHYSAIEGEGFKTLEEGQAVEFEVVQA-A 55

Query: 62 NGKYSAENLKL 72
           G  +++  KL
Sbjct: 56 KGPQASKVRKL 66


>gi|84501623|ref|ZP_00999795.1| cold shock family protein [Oceanicola batsensis HTCC2597]
 gi|84390244|gb|EAQ02803.1| cold shock family protein [Oceanicola batsensis HTCC2597]
          Length = 68

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE   E G DVF+H SAV  +GL  L + Q V Y+  Q+  
Sbjct: 1  MPVGTVKWFNTTKGYGFIEPE---EGGKDVFVHISAVERSGLTGLADNQKVGYEL-QDGR 56

Query: 62 NGKYSAENLKLV 73
          +G+  A +LKL+
Sbjct: 57 DGRKMASDLKLL 68


>gi|290473959|ref|YP_003466833.1| DNA replication inhibitor, nucleic acid-binding domain
          [Xenorhabdus bovienii SS-2004]
 gi|289173266|emb|CBJ80041.1| DNA replication inhibitor, nucleic acid-binding domain
          [Xenorhabdus bovienii SS-2004]
          Length = 76

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P      GDD+F H S +   G   L  GQ V +   Q   
Sbjct: 1  METGTVKWFNNAKGFGFICP---ASGGDDIFAHYSTIQMDGYRTLKAGQKVNFSIHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|54026196|ref|YP_120438.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54017704|dbj|BAD59074.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 68

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  +G    G DVF+H SAV+ +G  +L EGQ V ++  Q   
Sbjct: 1  MAQGIVKWFNSEKGFGFIAQDG---GGPDVFVHYSAVSGSGFRSLDEGQRVEFEIGQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+++++V
Sbjct: 58 G--PQAQDVRVV 67


>gi|115360542|ref|YP_777679.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria AMMD]
 gi|115285870|gb|ABI91345.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
          AMMD]
          Length = 67

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S +   G   L EGQ V+Y+  +N  
Sbjct: 1  MDTGTVKWFNDGKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYE-TKNGP 56

Query: 62 NGKYSAE 68
           G  +A 
Sbjct: 57 KGLQAAN 63


>gi|99081568|ref|YP_613722.1| cold-shock DNA-binding protein family protein [Ruegeria sp.
          TM1040]
 gi|99037848|gb|ABF64460.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040]
          Length = 68

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE   E G DVF+H SAV  +GL  L + Q V Y+  +   
Sbjct: 1  MPTGTVKWFNTTKGYGFIEPE---EGGKDVFVHISAVERSGLTGLADNQKVGYELTEG-R 56

Query: 62 NGKYSAENLKLV 73
          +G+  A +++ +
Sbjct: 57 DGRQMAGDIRPL 68


>gi|16801190|ref|NP_471458.1| hypothetical protein lin2124 [Listeria innocua Clip11262]
 gi|16804055|ref|NP_465540.1| hypothetical protein lmo2016 [Listeria monocytogenes EGD-e]
 gi|46908245|ref|YP_014634.1| cold-shock domain-contain protein [Listeria monocytogenes
          serotype 4b str. F2365]
 gi|47093186|ref|ZP_00230960.1| cold-shock domain family protein [Listeria monocytogenes str. 4b
          H7858]
 gi|47096659|ref|ZP_00234246.1| cold-shock domain family protein [Listeria monocytogenes str.
          1/2a F6854]
 gi|116873452|ref|YP_850233.1| cold shock-like protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|217963837|ref|YP_002349515.1| hypothetical protein LMHCC_0544 [Listeria monocytogenes HCC23]
 gi|224498533|ref|ZP_03666882.1| hypothetical protein LmonF1_02104 [Listeria monocytogenes Finland
          1988]
 gi|224501183|ref|ZP_03669490.1| hypothetical protein LmonFR_01460 [Listeria monocytogenes FSL
          R2-561]
 gi|226224613|ref|YP_002758720.1| major cold-shock protein [Listeria monocytogenes Clip81459]
 gi|254825493|ref|ZP_05230494.1| cold-shock domain family protein [Listeria monocytogenes FSL
          J1-194]
 gi|254827097|ref|ZP_05231784.1| cspB [Listeria monocytogenes FSL N3-165]
 gi|254831742|ref|ZP_05236397.1| major cold-shock protein [Listeria monocytogenes 10403S]
 gi|254854374|ref|ZP_05243722.1| cold-shock domain family protein [Listeria monocytogenes FSL
          R2-503]
 gi|254899286|ref|ZP_05259210.1| major cold-shock protein [Listeria monocytogenes J0161]
 gi|254912575|ref|ZP_05262587.1| cspB [Listeria monocytogenes J2818]
 gi|254931816|ref|ZP_05265175.1| cold-shock domain family protein [Listeria monocytogenes HPB2262]
 gi|254936901|ref|ZP_05268598.1| cold-shock domain family protein [Listeria monocytogenes F6900]
 gi|255022834|ref|ZP_05294820.1| major cold-shock protein [Listeria monocytogenes FSL J1-208]
 gi|255029500|ref|ZP_05301451.1| major cold-shock protein [Listeria monocytogenes LO28]
 gi|255521591|ref|ZP_05388828.1| major cold-shock protein [Listeria monocytogenes FSL J1-175]
 gi|284802462|ref|YP_003414327.1| hypothetical protein LM5578_2218 [Listeria monocytogenes 08-5578]
 gi|284995604|ref|YP_003417372.1| hypothetical protein LM5923_2169 [Listeria monocytogenes 08-5923]
 gi|290892166|ref|ZP_06555162.1| cold-shock domain-containing protein [Listeria monocytogenes FSL
          J2-071]
 gi|300763679|ref|ZP_07073676.1| cold-shock domain family protein [Listeria monocytogenes FSL
          N1-017]
 gi|61221528|sp|P0A357|CSPB_LISMO RecName: Full=Cold shock-like protein CspLB; Short=CspB
 gi|61221529|sp|P0A358|CSPB_LISIN RecName: Full=Cold shock-like protein CspLB; Short=CspB
 gi|12054789|emb|CAC20631.1| cold shock protein (CspLB) [Listeria monocytogenes]
 gi|16411469|emb|CAD00094.1| cspB [Listeria monocytogenes EGD-e]
 gi|16414638|emb|CAC97354.1| cspB [Listeria innocua Clip11262]
 gi|46881516|gb|AAT04811.1| cold-shock domain family protein [Listeria monocytogenes serotype
          4b str. F2365]
 gi|47014981|gb|EAL05927.1| cold-shock domain family protein [Listeria monocytogenes str.
          1/2a F6854]
 gi|47018437|gb|EAL09196.1| cold-shock domain family protein [Listeria monocytogenes str. 4b
          H7858]
 gi|116742330|emb|CAK21454.1| cold shock-like protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|217333107|gb|ACK38901.1| conserved domain protein [Listeria monocytogenes HCC23]
 gi|225877075|emb|CAS05786.1| Putative major cold-shock protein [Listeria monocytogenes
          serotype 4b str. CLIP 80459]
 gi|258599480|gb|EEW12805.1| cspB [Listeria monocytogenes FSL N3-165]
 gi|258607773|gb|EEW20381.1| cold-shock domain family protein [Listeria monocytogenes FSL
          R2-503]
 gi|258609499|gb|EEW22107.1| cold-shock domain family protein [Listeria monocytogenes F6900]
 gi|284058024|gb|ADB68965.1| hypothetical protein LM5578_2218 [Listeria monocytogenes 08-5578]
 gi|284061071|gb|ADB72010.1| hypothetical protein LM5923_2169 [Listeria monocytogenes 08-5923]
 gi|290558289|gb|EFD91807.1| cold-shock domain-containing protein [Listeria monocytogenes FSL
          J2-071]
 gi|293583370|gb|EFF95402.1| cold-shock domain family protein [Listeria monocytogenes HPB2262]
 gi|293590564|gb|EFF98898.1| cspB [Listeria monocytogenes J2818]
 gi|293594735|gb|EFG02496.1| cold-shock domain family protein [Listeria monocytogenes FSL
          J1-194]
 gi|300515415|gb|EFK42465.1| cold-shock domain family protein [Listeria monocytogenes FSL
          N1-017]
 gi|307571592|emb|CAR84771.1| cold-shock domain family protein [Listeria monocytogenes L99]
 gi|313607794|gb|EFR83992.1| putative cold-shock protein [Listeria monocytogenes FSL F2-208]
 gi|313618008|gb|EFR90155.1| putative cold-shock protein [Listeria innocua FSL S4-378]
 gi|313623004|gb|EFR93297.1| putative cold-shock protein [Listeria innocua FSL J1-023]
 gi|328466357|gb|EGF37514.1| hypothetical protein LM1816_12332 [Listeria monocytogenes 1816]
 gi|332312449|gb|EGJ25544.1| Cold shock-like protein CspD [Listeria monocytogenes str. Scott
          A]
          Length = 66

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V ++ V+   
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQ- 55

Query: 62 NGKYSAENLKL 72
           G  + +  KL
Sbjct: 56 RGPQAEKVTKL 66


>gi|170017900|ref|YP_001728819.1| cold shock protein [Leuconostoc citreum KM20]
 gi|169804757|gb|ACA83375.1| Cold shock protein [Leuconostoc citreum KM20]
          Length = 66

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGF+T E    +G+DVF H SA+   G   L EGQ V ++ V++  
Sbjct: 1  MEKGTVKWFNGEKGYGFVTRE----NGEDVFAHFSAIQGDGFKTLEEGQAVEFE-VESSD 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 RGLQAANIVKL 66


>gi|327481503|gb|AEA84813.1| cold-shock DNA-binding protein [Pseudomonas stutzeri DSM 4166]
          Length = 177

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++KW+N  KG+GFI+ +    SGDDVF+H  A+   G   L EGQ V +  +  D 
Sbjct: 108 RESGTVKWFNTSKGFGFISRD----SGDDVFVHFRAIRGEGHRILVEGQRVEFTIMMRDK 163

Query: 62  NGKYSAENLKLVPKS 76
                AE++  V  +
Sbjct: 164 G--LQAEDVVTVDSA 176


>gi|311029540|ref|ZP_07707630.1| cold shock protein [Bacillus sp. m3-13]
          Length = 65

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+  A
Sbjct: 1  MLQGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQEVSFEIVEG-A 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|319948998|ref|ZP_08023098.1| cold-shock protein [Dietzia cinnamea P4]
 gi|319437339|gb|EFV92359.1| cold-shock protein [Dietzia cinnamea P4]
          Length = 67

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI PE   +   D+F+H S++   G  +L E Q V ++  +   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAPE---DGSADLFVHYSSIEGTGFKSLEENQRVEFEVGEGQK 57

Query: 62 NGKYS 66
            +  
Sbjct: 58 GPQAQ 62


>gi|226939860|ref|YP_002794933.1| CspA [Laribacter hongkongensis HLHK9]
 gi|226714786|gb|ACO73924.1| CspA [Laribacter hongkongensis HLHK9]
          Length = 67

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI+P+   E G+D+F H SA+ S G   L EGQ V++D      
Sbjct: 1  MATGIVKWFNESKGFGFISPD---EGGEDLFAHFSAIQSKGFKTLAEGQRVSFDVTTGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|186477475|ref|YP_001858945.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184193934|gb|ACC71899.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 67

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H S +   G   L E Q VTYD V+   
Sbjct: 1  METGTVKWFNDAKGFGFITPDA---GGEDLFAHFSEIRVEGFKTLQENQKVTYD-VKTGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|304407201|ref|ZP_07388854.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
 gi|304343642|gb|EFM09483.1| cold-shock DNA-binding domain protein [Paenibacillus
          curdlanolyticus YK9]
          Length = 66

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI+ E     G+DVF+H SA+   G  +L EGQ V ++ VQ + 
Sbjct: 1  MVTGTVKWFNAEKGFGFISVE----GGEDVFVHFSAIQGDGYKSLDEGQSVEFNIVQGNR 56

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 57 G--AQAENV 63


>gi|84514337|ref|ZP_01001701.1| cold shock family protein [Loktanella vestfoldensis SKA53]
 gi|84511388|gb|EAQ07841.1| cold shock family protein [Loktanella vestfoldensis SKA53]
          Length = 80

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PEG      DVF+H SAV  +GL  L + Q V +D  +   
Sbjct: 12 MASGTVKWFNTTKGYGFIAPEG---GSKDVFVHISAVERSGLTGLKDNQKVNFDI-EASR 67

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 68 DGRESAVNLTL 78


>gi|30062528|ref|NP_836699.1| cold shock protein CspG [Shigella flexneri 2a str. 2457T]
 gi|56479790|ref|NP_706912.2| cold shock protein CspG [Shigella flexneri 2a str. 301]
 gi|110805005|ref|YP_688525.1| cold shock protein CspG [Shigella flexneri 5 str. 8401]
 gi|312971120|ref|ZP_07785299.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|30040774|gb|AAP16505.1| putative cold shock protein [Shigella flexneri 2a str. 2457T]
 gi|56383341|gb|AAN42619.2| putative cold shock protein [Shigella flexneri 2a str. 301]
 gi|110614553|gb|ABF03220.1| cold shock-like protein CspG [Shigella flexneri 5 str. 8401]
 gi|281600354|gb|ADA73338.1| Cold shock-like protein cspG [Shigella flexneri 2002017]
 gi|310336881|gb|EFQ02048.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|313650757|gb|EFS15158.1| cold shock-like protein cspG [Shigella flexneri 2a str. 2457T]
 gi|315619077|gb|EFU99658.1| cold shock-like protein cspG [Escherichia coli 3431]
 gi|323190646|gb|EFZ75916.1| cold shock-like protein cspG [Escherichia coli RN587/1]
 gi|332762777|gb|EGJ93040.1| cold shock-like protein cspG [Shigella flexneri K-671]
 gi|332767786|gb|EGJ97977.1| cold shock protein CspG [Shigella flexneri 2930-71]
 gi|333008663|gb|EGK28129.1| cold shock-like protein cspG [Shigella flexneri K-272]
 gi|333020008|gb|EGK39279.1| cold shock-like protein cspG [Shigella flexneri K-304]
          Length = 66

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H +A+ S     L E Q V +   Q    G
Sbjct: 2  TGLVKWFNADKGFGFITPD---DGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQ-RG 57

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 58 PAAANVVTL 66


>gi|296118095|ref|ZP_06836677.1| putative cold shock protein [Corynebacterium ammoniagenes DSM
          20306]
 gi|295968981|gb|EFG82224.1| putative cold shock protein [Corynebacterium ammoniagenes DSM
          20306]
          Length = 67

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H S +   G   L E Q V+++  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQQVSFEIGEGQK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--PQATNVNAL 67


>gi|300722953|ref|YP_003712249.1| Qin prophage; cold shock protein [Xenorhabdus nematophila ATCC
          19061]
 gi|297629466|emb|CBJ90067.1| Qin prophage; cold shock protein [Xenorhabdus nematophila ATCC
          19061]
          Length = 71

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P   ++   DVF+H SA+ S     L+EGQ V +   +N A G
Sbjct: 6  TGLVKWFNADKGFGFISP---SDGSKDVFVHFSAIQSNDYRTLSEGQKVEFTI-ENGAKG 61

Query: 64 KYSAENL 70
            +A  +
Sbjct: 62 PAAANVV 68


>gi|209517087|ref|ZP_03265934.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295677385|ref|YP_003605909.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|209502480|gb|EEA02489.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|295437228|gb|ADG16398.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
          Length = 67

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S +   G   L E Q V+++  Q   
Sbjct: 1  MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAENQKVSFETKQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 58 G--LQAANIKPL 67


>gi|58582344|ref|YP_201360.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426938|gb|AAW75975.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 121

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +KW+N  KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ     
Sbjct: 58  NGIVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQKG- 112

Query: 64  KYSAENLKLV 73
              A+ ++ V
Sbjct: 113 -MQADQVQAV 121


>gi|308049700|ref|YP_003913266.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM
          9799]
 gi|307631890|gb|ADN76192.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM
          9799]
          Length = 69

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI PEG    G+DVF H S +   G   L  GQ+V ++      
Sbjct: 1  MAQGTVKWFNNAKGFGFICPEG---GGEDVFAHYSTIEMEGYRTLKAGQVVEFEMEAGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 58 G--MHASNIQPV 67


>gi|295397227|ref|ZP_06807326.1| cold shock protein CspA [Aerococcus viridans ATCC 11563]
 gi|294974536|gb|EFG50264.1| cold shock protein CspA [Aerococcus viridans ATCC 11563]
          Length = 66

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI         DDVF+H +A+   G  +L EGQ V+++  ++  
Sbjct: 1  MEQGKVKWFNAEKGFGFIE----RSGADDVFVHFTAIQGDGFKSLEEGQEVSFEI-EDGN 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGPQAANVVK 65


>gi|269124786|ref|YP_003298156.1| cold-shock DNA-binding domain-containing protein [Thermomonospora
          curvata DSM 43183]
 gi|268309744|gb|ACY96118.1| cold-shock DNA-binding domain protein [Thermomonospora curvata
          DSM 43183]
          Length = 67

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NPDKG+GFI+P+   +   D+F+H SA+   G   L E Q V Y  VQ   
Sbjct: 1  MAQGTVKWFNPDKGFGFISPD---DGSADIFVHHSAIQMRGFRTLVEEQRVEYTAVQGPK 57

Query: 62 NGKYSAENLKLV 73
               A+ ++ +
Sbjct: 58 G--LQADVVRAL 67


>gi|189426235|ref|YP_001953412.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
 gi|189422494|gb|ACD96892.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
          Length = 67

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI  E     G+DVF H SA+ S G  +L EG+ V++D VQ   
Sbjct: 1  MAQGKVKWFNDTKGFGFIEQE----GGEDVFAHFSAIQSEGFKSLAEGESVSFDIVQG-P 55

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 56 KGLQAANIVKL 66


>gi|297624347|ref|YP_003705781.1| cold-shock DNA-binding domain-containing protein [Truepera
          radiovictrix DSM 17093]
 gi|297165527|gb|ADI15238.1| cold-shock DNA-binding domain protein [Truepera radiovictrix DSM
          17093]
          Length = 84

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ +KG+GFI  +G    G DVF H SA+ ++G  +L EG  V ++  Q   
Sbjct: 1  MATGRVKWFSNEKGFGFIEQDG---GGADVFCHFSAINASGYRSLNEGDEVEFEVEQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+N++++
Sbjct: 58 G--LQAKNVEVI 67


>gi|289209718|ref|YP_003461784.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          K90mix]
 gi|288945349|gb|ADC73048.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          K90mix]
          Length = 67

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N  KG+GFITP+   + G DVF+H SA++ +G   L EGQ V+++  Q  A
Sbjct: 1  MNTGVVKWFNESKGFGFITPD---DGGKDVFVHFSAISGSGFKTLAEGQKVSFEI-QETA 56

Query: 62 NGKYSAENLKL 72
           G  + E   L
Sbjct: 57 KGLAAGEVTAL 67


>gi|139474525|ref|YP_001129241.1| cold shock protein [Streptococcus pyogenes str. Manfredo]
 gi|134272772|emb|CAM31047.1| cold shock protein [Streptococcus pyogenes str. Manfredo]
          Length = 67

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+    TE+G D+F H SA+ + G   L EGQ V +D  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFIS----TENGQDIFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--PQAVNITKL 66


>gi|317492161|ref|ZP_07950591.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919866|gb|EFV41195.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 69

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFITP    +   DVF+H SA+ S G   L EGQ V +  +Q+   
Sbjct: 4  KTGHVKWFNESKGFGFITP---ADGSKDVFVHFSAIKSDGFKTLAEGQQVEF-AIQDSPR 59

Query: 63 GKYSAENLKL 72
          G  +A+ + L
Sbjct: 60 GPSAADVIAL 69


>gi|239995438|ref|ZP_04715962.1| putative Cold shock-like protein [Alteromonas macleodii ATCC
          27126]
          Length = 70

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFITPE     G DVF+H  ++AS G   L EGQ V+++  Q    G
Sbjct: 6  NGTVKWFNEEKGFGFITPEA---GGKDVFVHFRSIASDGFKTLKEGQEVSFEVEQGQ-KG 61

Query: 64 KYSAENL 70
            +A  +
Sbjct: 62 PQAANVV 68


>gi|90019067|gb|ABD84187.1| unknown [Yersinia sp. MH-1]
          Length = 77

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP    + G DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 13 TGLVKWFDAGKGFGFITP---ADGGKDVFVHFSAIQSNDFKTLDEGQRVEFSI-ENGAKG 68

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 69 PSAANVVAL 77


>gi|297584713|ref|YP_003700493.1| cold-shock DNA-binding domain-containing protein [Bacillus
          selenitireducens MLS10]
 gi|297143170|gb|ADH99927.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens
          MLS10]
          Length = 65

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ VT+D  Q   
Sbjct: 1  MTQGTVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVTFDIEQGQ- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|118595187|ref|ZP_01552534.1| Possible Cold-shock DNA-binding domain protein [Methylophilales
          bacterium HTCC2181]
 gi|118440965|gb|EAV47592.1| Possible Cold-shock DNA-binding domain protein [Methylophilales
          bacterium HTCC2181]
          Length = 68

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H SA+   G  +L EG  V+++   +  
Sbjct: 1  MATGTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVDDGYKSLKEGARVSFEVT-DGP 56

Query: 62 NGKYSAENLK 71
           GK  A N++
Sbjct: 57 KGKQ-ASNIQ 65


>gi|28377809|ref|NP_784701.1| cold shock protein CspC [Lactobacillus plantarum WCFS1]
 gi|254555993|ref|YP_003062410.1| cold shock protein CspC [Lactobacillus plantarum JDM1]
 gi|300767794|ref|ZP_07077704.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308179985|ref|YP_003924113.1| cold shock protein CspC [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|28270642|emb|CAD63548.1| cold shock protein CspC [Lactobacillus plantarum WCFS1]
 gi|254044920|gb|ACT61713.1| cold shock protein CspC [Lactobacillus plantarum JDM1]
 gi|300494779|gb|EFK29937.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308045476|gb|ADN98019.1| cold shock protein CspC [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 66

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT E    +G DVF+H SA+   G  +L EGQ V +D  ++D 
Sbjct: 1  MEHGTVKWFNADKGFGFITRE----NGSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESDR 56

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 57 G--PQAVNVT 64


>gi|118578996|ref|YP_900246.1| cold-shock DNA-binding domain-containing protein [Pelobacter
          propionicus DSM 2379]
 gi|118501706|gb|ABK98188.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM
          2379]
          Length = 67

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI  E     G+DVF+H SA+   G  +L+EG  VT+D  Q   
Sbjct: 1  MAKGKVKWFNDTKGFGFIEQE----GGEDVFVHFSAIQGEGFKSLSEGDEVTFDITQG-P 55

Query: 62 NGKYSAENLKL 72
           G  SA  +K+
Sbjct: 56 KGLQSANVVKV 66


>gi|237732149|ref|ZP_04562630.1| cspB [Citrobacter sp. 30_2]
 gi|226907688|gb|EEH93606.1| cspB [Citrobacter sp. 30_2]
          Length = 97

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+NP+KG+GFITP    +   DVF+H SA+ S     L E Q V +   Q    G
Sbjct: 33 TGLVKWFNPEKGFGFITP---ADGSKDVFVHFSAIQSNEFKTLNENQKVEFGVEQG-PKG 88

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 89 PSAINVVAL 97


>gi|160894675|ref|ZP_02075450.1| hypothetical protein CLOL250_02226 [Clostridium sp. L2-50]
 gi|156863609|gb|EDO57040.1| hypothetical protein CLOL250_02226 [Clostridium sp. L2-50]
          Length = 66

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI    S E+GDD+F+H SA+  +G   L EG  V ++ ++ + 
Sbjct: 1  MKTGTVKWFNAKKGYGFI----SDENGDDIFVHFSALNMSGFKVLEEGDKVEFEVIEGE- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 KGPQAANVTKL 66


>gi|77920396|ref|YP_358211.1| cold shock proteins [Pelobacter carbinolicus DSM 2380]
 gi|77546479|gb|ABA90041.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
          DSM 2380]
          Length = 85

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +    +G DVF+H SA+   G  +L EG  V++D V +  
Sbjct: 20 MAEGTVKWFNDAKGFGFIEQD----NGPDVFVHFSAIQGEGFKSLVEGDRVSFDVV-DGP 74

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 75 KGPQAANVQK 84


>gi|319440471|ref|ZP_07989627.1| hypothetical protein CvarD4_01780 [Corynebacterium variabile DSM
          44702]
          Length = 67

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI P    + G DVF+H S +   G   L E Q V ++  +  A
Sbjct: 1  MAQGTVKWFNAEKGYGFIAP---NDGGADVFVHYSEIQGNGFRTLEENQQVEFEIGEG-A 56

Query: 62 NGKYSAENLKL 72
           G  + +   L
Sbjct: 57 KGPQAQQVTAL 67


>gi|317493995|ref|ZP_07952411.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917768|gb|EFV39111.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 70

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   DVF+H SA+ S    +L EGQ V +   +N A G
Sbjct: 6  TGLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSDSYKSLDEGQSVEFTI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVVAL 70


>gi|310767159|gb|ADP12109.1| cold shock-like protein [Erwinia sp. Ejp617]
          Length = 75

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G    GDD+F H S +   G   L  GQ V +D  Q   
Sbjct: 1  MMTGTVKWFNNAKGFGFICPVG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|145588771|ref|YP_001155368.1| cold-shock DNA-binding domain-containing protein
          [Polynucleobacter necessarius subsp. asymbioticus
          QLW-P1DMWA-1]
 gi|145047177|gb|ABP33804.1| cold-shock DNA-binding protein family [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 67

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITPE     G+D+F H SA+ S G  +L EGQ VT+D      
Sbjct: 1  MANGIVKWFNDAKGFGFITPEL---GGEDLFAHFSAINSNGFKSLAEGQKVTFDIT-TGP 56

Query: 62 NGKYSAENLKLV 73
           GK  A N++ V
Sbjct: 57 KGKL-ASNIQPV 67


>gi|187921538|ref|YP_001890570.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phytofirmans PsJN]
 gi|296158545|ref|ZP_06841375.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|187719976|gb|ACD21199.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|295891113|gb|EFG70901.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
          Length = 67

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H S V  +G  +L E Q VT++  Q   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEVQGSGFKSLQENQKVTFEVKQG-P 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|24374170|ref|NP_718213.1| stress response protein CspD [Shewanella oneidensis MR-1]
 gi|113969986|ref|YP_733779.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-4]
 gi|114047221|ref|YP_737771.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-7]
 gi|117920198|ref|YP_869390.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          ANA-3]
 gi|146293325|ref|YP_001183749.1| cold-shock DNA-binding domain-containing protein [Shewanella
          putrefaciens CN-32]
 gi|24348677|gb|AAN55657.1|AE015704_8 stress response protein CspD [Shewanella oneidensis MR-1]
 gi|113884670|gb|ABI38722.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4]
 gi|113888663|gb|ABI42714.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7]
 gi|117612530|gb|ABK47984.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3]
 gi|145565015|gb|ABP75950.1| cold-shock DNA-binding protein family [Shewanella putrefaciens
          CN-32]
 gi|319426625|gb|ADV54699.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens
          200]
          Length = 68

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G+DVF H S +   G   L  GQ V ++  Q   
Sbjct: 1  MASGTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEQGPK 57

Query: 62 NGKYSA 67
              SA
Sbjct: 58 GMHASA 63


>gi|30019750|ref|NP_831381.1| cold shock protein [Bacillus cereus ATCC 14579]
 gi|206970763|ref|ZP_03231715.1| cold shock protein CspB [Bacillus cereus AH1134]
 gi|218233734|ref|YP_002366385.1| cold shock protein CspB [Bacillus cereus B4264]
 gi|218896633|ref|YP_002445044.1| cold shock protein CspB [Bacillus cereus G9842]
 gi|228900283|ref|ZP_04064513.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222]
 gi|228907338|ref|ZP_04071196.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 200]
 gi|228920413|ref|ZP_04083758.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228938814|ref|ZP_04101414.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228952082|ref|ZP_04114177.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228957979|ref|ZP_04119716.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228964684|ref|ZP_04125791.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228971695|ref|ZP_04132316.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228978304|ref|ZP_04138681.1| Cold shock-like protein cspB [Bacillus thuringiensis Bt407]
 gi|229043455|ref|ZP_04191165.1| Cold shock-like protein cspB [Bacillus cereus AH676]
 gi|229069255|ref|ZP_04202545.1| Cold shock-like protein cspB [Bacillus cereus F65185]
 gi|229078885|ref|ZP_04211437.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2]
 gi|229109158|ref|ZP_04238757.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15]
 gi|229127029|ref|ZP_04256028.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4]
 gi|229144315|ref|ZP_04272721.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST24]
 gi|229149903|ref|ZP_04278131.1| Cold shock-like protein cspB [Bacillus cereus m1550]
 gi|229172343|ref|ZP_04299903.1| Cold shock-like protein cspB [Bacillus cereus MM3]
 gi|229189784|ref|ZP_04316797.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876]
 gi|296502284|ref|YP_003663984.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|29895295|gb|AAP08582.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gi|206734399|gb|EDZ51569.1| cold shock protein CspB [Bacillus cereus AH1134]
 gi|218161691|gb|ACK61683.1| cold shock protein CspB [Bacillus cereus B4264]
 gi|218544906|gb|ACK97300.1| cold shock protein CspB [Bacillus cereus G9842]
 gi|228593698|gb|EEK51504.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876]
 gi|228611139|gb|EEK68401.1| Cold shock-like protein cspB [Bacillus cereus MM3]
 gi|228633584|gb|EEK90185.1| Cold shock-like protein cspB [Bacillus cereus m1550]
 gi|228639102|gb|EEK95526.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST24]
 gi|228656382|gb|EEL12221.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4]
 gi|228674168|gb|EEL29413.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15]
 gi|228704299|gb|EEL56733.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2]
 gi|228713742|gb|EEL65627.1| Cold shock-like protein cspB [Bacillus cereus F65185]
 gi|228725833|gb|EEL77080.1| Cold shock-like protein cspB [Bacillus cereus AH676]
 gi|228781321|gb|EEM29522.1| Cold shock-like protein cspB [Bacillus thuringiensis Bt407]
 gi|228787785|gb|EEM35743.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228794934|gb|EEM42433.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228801686|gb|EEM48566.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228807614|gb|EEM54138.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228820663|gb|EEM66688.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228839043|gb|EEM84339.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228852199|gb|EEM96995.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 200]
 gi|228859318|gb|EEN03748.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222]
 gi|296323336|gb|ADH06264.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|326939318|gb|AEA15214.1| cold shock protein [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 65

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|127512493|ref|YP_001093690.1| cold-shock DNA-binding domain-containing protein [Shewanella
          loihica PV-4]
 gi|126637788|gb|ABO23431.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4]
          Length = 68

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G+DVF H S +   G   L  GQ V ++  Q   
Sbjct: 1  MANGTVKWFNNAKGFGFICPEA---GGEDVFAHYSTIEMEGYRTLKAGQSVQFEVEQGPK 57

Query: 62 NGKYSA 67
              SA
Sbjct: 58 GMHASA 63


>gi|108761073|ref|YP_631772.1| cold-shock protein CspD [Myxococcus xanthus DK 1622]
 gi|4193396|gb|AAD10036.1| CspD [Myxococcus xanthus]
 gi|108464953|gb|ABF90138.1| cold-shock protein CspD [Myxococcus xanthus DK 1622]
          Length = 67

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+T +G    G+DVF H +A+   G   L EGQ V ++  +   
Sbjct: 1  MATGTVKWFNDAKGFGFLTQDG---GGEDVFCHHTAINMDGFRTLQEGQKVEFEVTRGPK 57

Query: 62 NGKYSAENLK 71
               A+N++
Sbjct: 58 G--LQAQNVR 65


>gi|322832164|ref|YP_004212191.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|321167365|gb|ADW73064.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
          Length = 73

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P      G+D+F H S +   G   L  GQ V +D  +   
Sbjct: 1  MQTGTVKWFNNAKGFGFICP---QNGGEDIFAHYSTIQMEGYRTLKAGQQVNFDVHEGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|311030382|ref|ZP_07708472.1| cold shock protein [Bacillus sp. m3-13]
          Length = 66

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EG+ V+++ V+ + 
Sbjct: 1  MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFSAITGDGFKSLEEGEEVSFEVVEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAANVTKL 66


>gi|284007908|emb|CBA73854.1| cold shock-like protein [Arsenophonus nasoniae]
          Length = 70

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G+D+F H S++   G   L  GQ V +   +   
Sbjct: 1  METGTVKWFNNAKGFGFICPE---NGGEDIFAHYSSIQMEGYRTLKAGQKVNFSSTKGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|256751272|ref|ZP_05492152.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          ethanolicus CCSD1]
 gi|289578721|ref|YP_003477348.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          italicus Ab9]
 gi|297544955|ref|YP_003677257.1| cold-shock DNA-binding domain-containing protein
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|307266235|ref|ZP_07547777.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|326390559|ref|ZP_08212115.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          ethanolicus JW 200]
 gi|256749827|gb|EEU62851.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          ethanolicus CCSD1]
 gi|289528434|gb|ADD02786.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          italicus Ab9]
 gi|296842730|gb|ADH61246.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|306918765|gb|EFN48997.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|325993384|gb|EGD51820.1| cold-shock DNA-binding domain protein [Thermoanaerobacter
          ethanolicus JW 200]
          Length = 67

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KGYGFI  E     G DVF+H SA+   G   L EGQ V ++ V+  A
Sbjct: 1  MVRGKVKWFNAEKGYGFIERE----DGTDVFVHYSAIEGDGFKTLEEGQKVEFEVVEA-A 55

Query: 62 NGKYSAENLKL 72
           G  +++  K+
Sbjct: 56 KGPQASKVRKV 66


>gi|186473959|ref|YP_001861301.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184196291|gb|ACC74255.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 67

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H S + + G  +L E Q V+++ V+   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRTEGFKSLQENQKVSFE-VKMGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|117619345|ref|YP_858396.1| hypothetical protein AHA_3962 [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|117560752|gb|ABK37700.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
          Length = 70

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N +KG+GFI+P   T+   DVF+H SA+ + G   L EGQ V +   Q    G
Sbjct: 6  TGTVKFFNAEKGFGFISP---TDGSKDVFVHFSAIQTPGFKTLDEGQRVEFTIEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVVAL 70


>gi|54022330|ref|YP_116572.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54013838|dbj|BAD55208.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 68

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H S +  +G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGSGFRTLEENQKVEFEVGQGTK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|312200428|ref|YP_004020489.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
 gi|311231764|gb|ADP84619.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
          Length = 67

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ +G    G DVF+H SA+ + G  +L EGQ V ++ VQ   
Sbjct: 1  MAQGTVKWFNAEKGFGFISVDG---GGPDVFVHFSAILTDGYKSLDEGQSVQFEIVQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+ ++ V
Sbjct: 58 G--PQADKVQPV 67


>gi|320012608|gb|ADW07458.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
          Length = 67

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H SA+ + G   L EGQ VT+D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIQQDG---GGPDVFAHYSAINATGFRELQEGQAVTFDVTQGQK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENIT 65


>gi|255264493|ref|ZP_05343835.1| conserved domain protein [Thalassiobium sp. R2A62]
 gi|255106828|gb|EET49502.1| conserved domain protein [Thalassiobium sp. R2A62]
          Length = 69

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+G      DVF+H SAV  +GL  L + Q V +D  +   
Sbjct: 1  MATGTVKWFNTTKGYGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVNFDI-EAGR 56

Query: 62 NGKYSAENLK 71
          +G+ SA N+ 
Sbjct: 57 DGRESAINIT 66


>gi|253999063|ref|YP_003051126.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. SIP3-4]
 gi|313201165|ref|YP_004039823.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. MP688]
 gi|253985742|gb|ACT50599.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4]
 gi|312440481|gb|ADQ84587.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688]
          Length = 67

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H SA+AS G  +L E + V++D      
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSAIASNGFKSLKENERVSFDITTGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQASNIQ 65


>gi|145225805|ref|YP_001136483.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          gilvum PYR-GCK]
 gi|315442490|ref|YP_004075369.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
 gi|145218291|gb|ABP47695.1| cold-shock DNA-binding protein family [Mycobacterium gilvum
          PYR-GCK]
 gi|315260793|gb|ADT97534.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
          Length = 67

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+   +   DVF+H S ++ +G  +L E Q V ++  Q + 
Sbjct: 1  MAQGTVKWFNGEKGFGFIAPD---DGSKDVFVHYSEISGSGYRSLEENQRVEFEVEQGNK 57

Query: 62 NGKYSAEN 69
            +    N
Sbjct: 58 GPQAVRVN 65


>gi|226358070|ref|YP_002787809.1| Cold shock protein [Deinococcus deserti VCD115]
 gi|226319713|gb|ACO47707.1| putative Cold shock protein [Deinococcus deserti VCD115]
          Length = 87

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI     T  G DVF H SA++ +G   L EG  V ++  +   
Sbjct: 1  MPAGKVKWFNAEKGFGFIE----TPGGPDVFAHFSAISGSGFKKLNEGDEVEFELEEGQR 56

Query: 62 NGKYSAENLKL 72
               A+N+ +
Sbjct: 57 GKGPQAKNIVV 67


>gi|94498414|ref|ZP_01304972.1| cold-shock DNA-binding domain protein [Sphingomonas sp. SKA58]
 gi|94422169|gb|EAT07212.1| cold-shock DNA-binding domain protein [Sphingomonas sp. SKA58]
          Length = 70

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKGYGFI P+   +   D F+H +AV  AGL  L E   V+YD  Q D
Sbjct: 1  MAITGTVKFFNADKGYGFIAPD---DGTPDAFVHITAVERAGLATLREKDRVSYDLEQ-D 56

Query: 61 ANGKYSAENLK 71
            GK +A NL 
Sbjct: 57 RRGKMAAVNLT 67


>gi|1864167|gb|AAB48629.1| major cold-shock protein homolog CspB [Listeria monocytogenes]
          Length = 66

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E     GDD+F+H SA+   G   L EGQ V ++ V+   
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVE----GGDDIFVHFSAIEGEGFKTLDEGQSVEFEIVEGQ- 55

Query: 62 NGKYSAENLKL 72
           G  + +  KL
Sbjct: 56 RGPQAEKVTKL 66


>gi|83942901|ref|ZP_00955361.1| cold shock family protein [Sulfitobacter sp. EE-36]
 gi|83954075|ref|ZP_00962795.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
 gi|83841112|gb|EAP80282.1| cold shock family protein [Sulfitobacter sp. NAS-14.1]
 gi|83845909|gb|EAP83786.1| cold shock family protein [Sulfitobacter sp. EE-36]
          Length = 68

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PEG    G DVF+H SAV  +GL  L + Q V+++  +   
Sbjct: 1  MPTGTVKWFNTTKGYGFIAPEG---GGSDVFVHISAVERSGLTGLADEQKVSFEMSEG-R 56

Query: 62 NGKYSAENLKLV 73
          +G+  A +L+L+
Sbjct: 57 DGRQMATDLELL 68


>gi|323467067|gb|ADX70754.1| cold shock-like protein, CspA family [Lactobacillus helveticus
          H10]
          Length = 66

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT       G DVF+H S++ + G  +L EGQ V+YD  Q   
Sbjct: 1  MQNGTVKWFNADKGFGFIT----GSDGTDVFVHFSSIKTDGFKSLEEGQKVSYDVEQG-R 55

Query: 62 NGKYSAENL 70
           G  +   +
Sbjct: 56 RGPQATNVV 64


>gi|229160646|ref|ZP_04288640.1| Cold shock-like protein cspB [Bacillus cereus R309803]
 gi|228622845|gb|EEK79677.1| Cold shock-like protein cspB [Bacillus cereus R309803]
          Length = 65

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIE----IEGADDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|224370369|ref|YP_002604533.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
 gi|223693086|gb|ACN16369.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
          Length = 86

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E    +G+D+F+H S++ + G  +L EG  VT+D  Q   
Sbjct: 21 MANGTVKWFNDSKGFGFIEQE----NGEDLFVHHSSINATGFKSLNEGDKVTFDVEQGQK 76

Query: 62 NGKYSAENLKLV 73
              +A N+ +V
Sbjct: 77 G--PAAGNVTVV 86


>gi|24347442|gb|AAN54703.1|AE015611_1 cold shock domain family protein [Shewanella oneidensis MR-1]
          Length = 81

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P+     G D F+H  A+ S G   L EGQ V+Y+  Q    G
Sbjct: 17 TGVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSDGFKTLAEGQKVSYEVEQGQ-KG 72

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 73 PQAANVVVL 81


>gi|323492820|ref|ZP_08097962.1| cold-shock DNA-binding domain-containing protein [Vibrio
          brasiliensis LMG 20546]
 gi|323312891|gb|EGA66013.1| cold-shock DNA-binding domain-containing protein [Vibrio
          brasiliensis LMG 20546]
          Length = 70

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFITPE     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 6  TGIVKWFNEEKGFGFITPE---NGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQ-KG 61

Query: 64 KYSAENL 70
            +A  +
Sbjct: 62 PQAANVV 68


>gi|116695961|ref|YP_841537.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|113530460|emb|CAJ96807.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
          Length = 67

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFITP+   + G D+F H S +   G  +L EG  V ++  Q   
Sbjct: 1  MATGIVKWFNSEKGYGFITPD---DGGKDLFAHHSEIQGTGFKSLEEGARVEFEVTQGQK 57

Query: 62 NGKYS 66
            + S
Sbjct: 58 GPQAS 62


>gi|94971382|ref|YP_593430.1| cold-shock DNA-binding protein family protein [Candidatus
          Koribacter versatilis Ellin345]
 gi|94553432|gb|ABF43356.1| cold-shock DNA-binding protein family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 66

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGF+T     +SG+DVF+H SA+ S G  +L EGQ V++  V+   
Sbjct: 1  MEQGTVKWFNDAKGYGFLT----RQSGEDVFVHFSAIQSKGFRSLQEGQTVSFSVVKGPK 56

Query: 62 NGKYSAENLKLV 73
               AEN+++V
Sbjct: 57 G--LQAENVQIV 66


>gi|254253023|ref|ZP_04946341.1| Cold shock protein [Burkholderia dolosa AUO158]
 gi|124895632|gb|EAY69512.1| Cold shock protein [Burkholderia dolosa AUO158]
          Length = 67

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     GDD+F H S +   G   L EGQ V+Y+  +   
Sbjct: 1  MDTGTVKWFNDSKGFGFITPD---NGGDDLFAHFSEIRGDGFKTLAEGQKVSYETKKGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--LQASNITPL 67


>gi|330447209|ref|ZP_08310859.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491400|dbj|GAA05356.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
          Length = 71

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V++D  Q    G
Sbjct: 7  TGSVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQGQ-KG 62

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 63 LQAANVVAL 71


>gi|270261198|ref|ZP_06189471.1| hypothetical protein SOD_a04230 [Serratia odorifera 4Rx13]
 gi|270044682|gb|EFA17773.1| hypothetical protein SOD_a04230 [Serratia odorifera 4Rx13]
          Length = 69

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y   Q+   
Sbjct: 4  KTGQVKWFNESKGFGFIEQ---NDGGKDVFVHFSAIATDGFKTLAEGQRVEYSI-QDSPR 59

Query: 63 GKYSAENLKL 72
          G  +A  + L
Sbjct: 60 GPAAANVVAL 69


>gi|154250399|ref|YP_001411224.1| cold-shock DNA-binding domain-containing protein
          [Fervidobacterium nodosum Rt17-B1]
 gi|154154335|gb|ABS61567.1| putative cold-shock DNA-binding domain protein [Fervidobacterium
          nodosum Rt17-B1]
          Length = 66

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KGYGFIT     E+G DVF+H SA+   G   L EG  V +D  QN   G
Sbjct: 2  KGTVKWFDSSKGYGFIT----GENGQDVFVHFSAIQMDGFKTLKEGDKVEFDI-QNGQKG 56

Query: 64 KYSAENLKLVP 74
            +A N+KLV 
Sbjct: 57 PQAA-NVKLVK 66


>gi|213966043|ref|ZP_03394232.1| conserved domain protein [Corynebacterium amycolatum SK46]
 gi|213951338|gb|EEB62731.1| conserved domain protein [Corynebacterium amycolatum SK46]
          Length = 67

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P    + G+DVF+H S +   G   L E Q V ++  +   
Sbjct: 1  MAQGTVKWFNSEKGFGFIAP---ADGGNDVFVHYSEIQGTGFKTLEENQAVEFEIGEGQK 57

Query: 62 NGKYSAENLKLV 73
               A ++K +
Sbjct: 58 G--PQALDVKPL 67


>gi|157962355|ref|YP_001502389.1| cold-shock DNA-binding domain-containing protein [Shewanella
          pealeana ATCC 700345]
 gi|167623650|ref|YP_001673944.1| cold-shock DNA-binding domain-containing protein [Shewanella
          halifaxensis HAW-EB4]
 gi|212634693|ref|YP_002311218.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3]
 gi|157847355|gb|ABV87854.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
          700345]
 gi|167353672|gb|ABZ76285.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis
          HAW-EB4]
 gi|212556177|gb|ACJ28631.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3]
          Length = 68

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G+DVF H S +   G   L  GQ V+++      
Sbjct: 1  MASGTVKWFNNAKGFGFICPDA---GGEDVFAHYSTIEMEGYRTLKAGQPVSFEVEAGPK 57

Query: 62 NGKYSA 67
              SA
Sbjct: 58 GMHASA 63


>gi|89073384|ref|ZP_01159908.1| putative cold shock-like protein CspD [Photobacterium sp. SKA34]
 gi|90579121|ref|ZP_01234931.1| putative cold shock-like protein CspD [Vibrio angustum S14]
 gi|89050871|gb|EAR56345.1| putative cold shock-like protein CspD [Photobacterium sp. SKA34]
 gi|90439954|gb|EAS65135.1| putative cold shock-like protein CspD [Vibrio angustum S14]
          Length = 73

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   +  DD+F H S +   G   L  GQ V Y+ VQ   
Sbjct: 1  MATGTVKWFNNAKGFGFICPE---DGEDDIFAHYSTIQMEGYRTLKAGQQVNYE-VQTGP 56

Query: 62 NGKYSAENL 70
           G +++E +
Sbjct: 57 KGYHASEII 65


>gi|320323777|gb|EFW79861.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. glycinea str. B076]
 gi|320327917|gb|EFW83922.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. glycinea str. race 4]
 gi|330881200|gb|EGH15349.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. glycinea str. race 4]
 gi|330987930|gb|EGH86033.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. lachrymans str. M301315]
 gi|331010738|gb|EGH90794.1| cold shock domain-containing protein CspD [Pseudomonas syringae
          pv. tabaci ATCC 11528]
          Length = 92

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G  +  DD+F H S +   G   L  GQ V+++ +Q   
Sbjct: 1  MLNGKVKWFNNAKGYGFIIEDGKPD--DDLFAHFSTIQMEGYKTLKAGQPVSFEIIQGPK 58

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 59 G--LHAVNIAPL 68


>gi|325676595|ref|ZP_08156273.1| cold shock transcription regulator protein [Rhodococcus equi ATCC
          33707]
 gi|325552773|gb|EGD22457.1| cold shock transcription regulator protein [Rhodococcus equi ATCC
          33707]
          Length = 98

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI PE   +   DVF H S +   G  +L E Q V+YD  Q   
Sbjct: 32 MANGTVKWFNAEKGFGFIAPE---DGSADVFAHYSEIQGGGFRSLDENQRVSYDLGQGAK 88

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 89 G--PQATNITAI 98


>gi|210608483|ref|ZP_03287859.1| hypothetical protein CLONEX_00038 [Clostridium nexile DSM 1787]
 gi|210153059|gb|EEA84065.1| hypothetical protein CLONEX_00038 [Clostridium nexile DSM 1787]
          Length = 66

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGFI    S E+G+DVF+H S +   G  +L EGQ V ++  +  A
Sbjct: 1  MNKGTVKWFNNQKGYGFI----SDEAGNDVFVHYSGLNMEGFKSLEEGQEVEFEVTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 KGPQAVNVVKL 66


>gi|167758030|ref|ZP_02430157.1| hypothetical protein CLOSCI_00368 [Clostridium scindens ATCC
          35704]
 gi|167663927|gb|EDS08057.1| hypothetical protein CLOSCI_00368 [Clostridium scindens ATCC
          35704]
          Length = 80

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +V +G++KW+N  KGYGFI+     E+G+DVF+H S +   G  +L EGQ V YD  +  
Sbjct: 14 IVMKGTVKWFNNQKGYGFIS----DEAGNDVFVHYSGLNMDGFKSLEEGQEVEYDVTEG- 68

Query: 61 ANGKYSAENLKL 72
          A G  +    +L
Sbjct: 69 AKGPQAVNVTRL 80


>gi|300857641|ref|YP_003782624.1| cold shock-like protein A [Corynebacterium pseudotuberculosis
          FRC41]
 gi|300685095|gb|ADK28017.1| cold shock-like protein A [Corynebacterium pseudotuberculosis
          FRC41]
 gi|302205379|gb|ADL09721.1| Cold-shock protein [Corynebacterium pseudotuberculosis C231]
 gi|302329933|gb|ADL20127.1| Cold-shock protein [Corynebacterium pseudotuberculosis 1002]
 gi|308275617|gb|ADO25516.1| Cold-shock protein [Corynebacterium pseudotuberculosis I19]
          Length = 67

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+   +   DVF+H S +   G   L E Q V ++  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPD---DGSADVFVHYSEIQGNGFRTLEENQKVEFEIGEGAK 57

Query: 62 NGKYS 66
            +  
Sbjct: 58 GPQAQ 62


>gi|312138017|ref|YP_004005353.1| cold shock protein [Rhodococcus equi 103S]
 gi|325675220|ref|ZP_08154905.1| cold shock protein A [Rhodococcus equi ATCC 33707]
 gi|311887356|emb|CBH46667.1| cold shock protein [Rhodococcus equi 103S]
 gi|325553926|gb|EGD23603.1| cold shock protein A [Rhodococcus equi ATCC 33707]
          Length = 67

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H S +  +G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGSGFRTLEENQRVEFEVGQGTK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|238792393|ref|ZP_04636027.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909]
 gi|238728319|gb|EEQ19839.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909]
          Length = 72

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y   Q+   
Sbjct: 7  KTGQVKWFNESKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPR 62

Query: 63 GKYSAENLKL 72
          G  +A  + L
Sbjct: 63 GPAAANVVAL 72


>gi|170702637|ref|ZP_02893506.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171319239|ref|ZP_02908355.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|172064865|ref|YP_001815577.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|170132457|gb|EDT00916.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171095541|gb|EDT40505.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|171997107|gb|ACB68024.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MC40-6]
          Length = 67

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S +   G   L EGQ V+Y+  ++  
Sbjct: 1  MDTGTVKWFNDGKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYE-TKSGP 56

Query: 62 NGKYSAE 68
           G  +A 
Sbjct: 57 KGLQAAN 63


>gi|16801058|ref|NP_471326.1| hypothetical protein lin1992 [Listeria innocua Clip11262]
 gi|16803918|ref|NP_465403.1| hypothetical protein lmo1879 [Listeria monocytogenes EGD-e]
 gi|46908111|ref|YP_014500.1| cold-shock domain-contain protein [Listeria monocytogenes
          serotype 4b str. F2365]
 gi|116873314|ref|YP_850095.1| cold shock-like protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|217963969|ref|YP_002349647.1| hypothetical protein LMHCC_0678 [Listeria monocytogenes HCC23]
 gi|224500231|ref|ZP_03668580.1| hypothetical protein LmonF1_11339 [Listeria monocytogenes Finland
          1988]
 gi|224501322|ref|ZP_03669629.1| hypothetical protein LmonFR_02165 [Listeria monocytogenes FSL
          R2-561]
 gi|226224482|ref|YP_002758589.1| cold shock protein [Listeria monocytogenes Clip81459]
 gi|254826079|ref|ZP_05231080.1| cspD [Listeria monocytogenes FSL J1-194]
 gi|254827237|ref|ZP_05231924.1| cspD [Listeria monocytogenes FSL N3-165]
 gi|254831521|ref|ZP_05236176.1| cold shock protein [Listeria monocytogenes 10403S]
 gi|254852782|ref|ZP_05242130.1| cspD [Listeria monocytogenes FSL R2-503]
 gi|254899425|ref|ZP_05259349.1| cold shock protein [Listeria monocytogenes J0161]
 gi|254912436|ref|ZP_05262448.1| cspD [Listeria monocytogenes J2818]
 gi|254931951|ref|ZP_05265310.1| cspD [Listeria monocytogenes HPB2262]
 gi|254936763|ref|ZP_05268460.1| cspD [Listeria monocytogenes F6900]
 gi|254992229|ref|ZP_05274419.1| cold shock protein [Listeria monocytogenes FSL J2-064]
 gi|255025065|ref|ZP_05297051.1| cold shock protein [Listeria monocytogenes FSL J1-208]
 gi|255521585|ref|ZP_05388822.1| cold shock protein [Listeria monocytogenes FSL J1-175]
 gi|284802324|ref|YP_003414189.1| hypothetical protein LM5578_2080 [Listeria monocytogenes 08-5578]
 gi|284995466|ref|YP_003417234.1| hypothetical protein LM5923_2031 [Listeria monocytogenes 08-5923]
 gi|289435225|ref|YP_003465097.1| cold shock protein CspD [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|290892995|ref|ZP_06555984.1| cspD protein [Listeria monocytogenes FSL J2-071]
 gi|300763811|ref|ZP_07073808.1| hypothetical protein LMHG_10648 [Listeria monocytogenes FSL
          N1-017]
 gi|315282896|ref|ZP_07871202.1| conserved domain protein [Listeria marthii FSL S4-120]
 gi|16411332|emb|CAC99957.1| cspD [Listeria monocytogenes EGD-e]
 gi|16414493|emb|CAC97222.1| cspD [Listeria innocua Clip11262]
 gi|46881381|gb|AAT04677.1| cold-shock domain family protein [Listeria monocytogenes serotype
          4b str. F2365]
 gi|116742192|emb|CAK21316.1| cold shock-like protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|217333239|gb|ACK39033.1| conserved domain protein [Listeria monocytogenes HCC23]
 gi|225876944|emb|CAS05653.1| Putative cold shock protein [Listeria monocytogenes serotype 4b
          str. CLIP 80459]
 gi|258599620|gb|EEW12945.1| cspD [Listeria monocytogenes FSL N3-165]
 gi|258606109|gb|EEW18717.1| cspD [Listeria monocytogenes FSL R2-503]
 gi|258609359|gb|EEW21967.1| cspD [Listeria monocytogenes F6900]
 gi|284057886|gb|ADB68827.1| hypothetical protein LM5578_2080 [Listeria monocytogenes 08-5578]
 gi|284060933|gb|ADB71872.1| hypothetical protein LM5923_2031 [Listeria monocytogenes 08-5923]
 gi|289171469|emb|CBH28013.1| cold shock protein CspD [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|290557355|gb|EFD90880.1| cspD protein [Listeria monocytogenes FSL J2-071]
 gi|293583503|gb|EFF95535.1| cspD [Listeria monocytogenes HPB2262]
 gi|293590418|gb|EFF98752.1| cspD [Listeria monocytogenes J2818]
 gi|293595320|gb|EFG03081.1| cspD [Listeria monocytogenes FSL J1-194]
 gi|300515547|gb|EFK42597.1| hypothetical protein LMHG_10648 [Listeria monocytogenes FSL
          N1-017]
 gi|307571461|emb|CAR84640.1| cold-shock domain family protein [Listeria monocytogenes L99]
 gi|313608061|gb|EFR84139.1| conserved domain protein [Listeria monocytogenes FSL F2-208]
 gi|313613460|gb|EFR87298.1| conserved domain protein [Listeria marthii FSL S4-120]
 gi|313618218|gb|EFR90291.1| conserved domain protein [Listeria innocua FSL S4-378]
 gi|313623202|gb|EFR93457.1| conserved domain protein [Listeria innocua FSL J1-023]
 gi|313632692|gb|EFR99666.1| conserved domain protein [Listeria seeligeri FSL N1-067]
 gi|313637242|gb|EFS02750.1| conserved domain protein [Listeria seeligeri FSL S4-171]
 gi|328466229|gb|EGF37386.1| cold shock protein CspD [Listeria monocytogenes 1816]
 gi|328473596|gb|EGF44433.1| cold shock protein CspD [Listeria monocytogenes 220]
 gi|332312320|gb|EGJ25415.1| Cold shock-like protein CspD [Listeria monocytogenes str. Scott
          A]
          Length = 66

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI     ++ G+D+F+H +A+   G  +L EGQ VT++ V+ + 
Sbjct: 1  MQNGKVKWFNNEKGYGFIE----SDGGEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGNR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--AQAANVE 64


>gi|319936791|ref|ZP_08011203.1| cold shock protein cspD [Coprobacillus sp. 29_1]
 gi|319808059|gb|EFW04631.1| cold shock protein cspD [Coprobacillus sp. 29_1]
          Length = 66

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFIT +     G D+F+H +++A  G  +L EGQ V++D  Q D 
Sbjct: 1  MNTGKVKWFNSEKGFGFITVD----GGKDIFVHYTSIAGHGYKSLEEGQNVSFDVTQGDR 56

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 57 G--DQASNVTVL 66


>gi|304415296|ref|ZP_07395986.1| cold shock protein [Candidatus Regiella insecticola LSR1]
 gi|304282851|gb|EFL91324.1| cold shock protein [Candidatus Regiella insecticola LSR1]
          Length = 71

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          H+G +KW+N  KG+GFITPE   +   DVF+H SA+   G   L EGQ V++   +N A 
Sbjct: 6  HKGQVKWFNESKGFGFITPE---DGSKDVFVHFSAIQDNGFKTLAEGQNVSFSI-ENGAK 61

Query: 63 GKYSAENLKL 72
          G  +A    L
Sbjct: 62 GPSAANVTPL 71


>gi|301381401|ref|ZP_07229819.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          Max13]
 gi|302058399|ref|ZP_07249940.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          K40]
 gi|302130352|ref|ZP_07256342.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          NCPPB 1108]
          Length = 91

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G     +D+F H SA+   G   L  GQ V ++ +Q   
Sbjct: 3  MLNGKVKWFNNAKGYGFILEDGKPN--EDLFAHYSAIQMDGYKTLKAGQSVRFEIIQGPK 60

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 61 G--LHAVNIQ 68


>gi|301160186|emb|CBW19708.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. SL1344]
 gi|323179480|gb|EFZ65047.1| cold shock-like protein cspG [Escherichia coli 1180]
          Length = 66

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H SA+ + G  +L EGQ V++   ++ A G
Sbjct: 2  TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 57

Query: 64 KYSAENLK 71
            +A N+ 
Sbjct: 58 P-AAGNVT 64


>gi|310826977|ref|YP_003959334.1| cold shock protein [Eubacterium limosum KIST612]
 gi|308738711|gb|ADO36371.1| cold shock protein [Eubacterium limosum KIST612]
          Length = 66

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N +KG+GFI+ E     GDDVF+H SA+   G   L EGQ VT+D  +   
Sbjct: 1  MNKGTVKWFNSEKGFGFISRE----EGDDVFVHFSAITGDGFKTLNEGQEVTFDTEEGPR 56

Query: 62 NGKYSAENLKL 72
               A+N+ +
Sbjct: 57 G--LQAKNVSV 65


>gi|288941930|ref|YP_003444170.1| cold-shock DNA-binding domain-containing protein [Allochromatium
          vinosum DSM 180]
 gi|288897302|gb|ADC63138.1| cold-shock DNA-binding domain protein [Allochromatium vinosum DSM
          180]
          Length = 68

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGF+ PEG  E   DVF+H S++   G   L EGQ V ++  +   
Sbjct: 1  MITGIVKWFNNAKGYGFVQPEGREE---DVFVHFSSIDMDGYKTLREGQKVEFELSEG-P 56

Query: 62 NGKYSAENLKLV 73
           G ++A   ++V
Sbjct: 57 KGLHAANVHRVV 68


>gi|188584960|ref|YP_001916505.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179349647|gb|ACB83917.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 68

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW++P KGYGFI  E   + G+DVF+H SA+   G   L EGQ V ++  Q D   
Sbjct: 2  RGTVKWFDPKKGYGFIEKE---DDGEDVFVHFSAIQQEGFKTLEEGQKVEFEVTQGDKG- 57

Query: 64 KYSAENLKLVP 74
             AEN+ ++ 
Sbjct: 58 -PQAENVVVME 67


>gi|317130365|ref|YP_004096647.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
 gi|315475313|gb|ADU31916.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
          Length = 66

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ VT++  +   
Sbjct: 1  MEQGKVKWFNSEKGFGFIERE----DGDDVFVHFSAIQGEGFKTLDEGQEVTFEIEEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  V
Sbjct: 57 G--PQATNVNKV 66


>gi|291326350|ref|ZP_06124178.2| conserved domain protein [Providencia rettgeri DSM 1131]
 gi|291314673|gb|EFE55126.1| conserved domain protein [Providencia rettgeri DSM 1131]
          Length = 66

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFITP    +   DVF+H SA+ S    +L EGQ V++   +N A G
Sbjct: 2  TGTVKWFNDDKGFGFITP---ADGSKDVFVHFSAIQSDNFKSLAEGQQVSFTI-ENGAKG 57

Query: 64 KYSAENL 70
            +A  +
Sbjct: 58 PAAANVI 64


>gi|22124143|ref|NP_667566.1| cold shock-like protein [Yersinia pestis KIM 10]
 gi|108809648|ref|YP_653564.1| major cold shock protein Cspa1 [Yersinia pestis Antiqua]
 gi|108813686|ref|YP_649453.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516]
 gi|21956898|gb|AAM83817.1|AE013622_6 cold shock-like protein [Yersinia pestis KIM 10]
 gi|108777334|gb|ABG19853.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108781561|gb|ABG15619.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
          Length = 102

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 38  TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 93

Query: 64  KYSAENLKL 72
             +   + L
Sbjct: 94  PSAVNVIAL 102


>gi|300722511|ref|YP_003711801.1| DNA replication inhibitor [Xenorhabdus nematophila ATCC 19061]
 gi|297629018|emb|CBJ89603.1| DNA replication inhibitor, nucleic acid-binding domain
          [Xenorhabdus nematophila ATCC 19061]
          Length = 76

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P   +  GDD+F H S +   G   L  GQ V +   Q   
Sbjct: 1  METGTVKWFNNAKGFGFICP---SSGGDDIFAHYSTIQMDGYRTLKAGQKVNFSVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|332686444|ref|YP_004456218.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311]
 gi|332370453|dbj|BAK21409.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311]
          Length = 66

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT     E+G+DVF+H SA+   G   L EG  VT+D  +   
Sbjct: 1  METGTVKWFNSDKGFGFIT----AENGNDVFVHFSAIQGDGFKTLEEGHTVTFDIEEGQ- 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGPQATNVVK 65


>gi|302187164|ref|ZP_07263837.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. syringae
           642]
          Length = 139

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 72  TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 126

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 127 LQAEDVIAALPR 138


>gi|295704907|ref|YP_003597982.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294802566|gb|ADF39632.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N DKG+GFI  E     G+DVF+H SA+   G  +L EGQ VT+D  Q   
Sbjct: 1  MEHGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQGEGFKSLDEGQEVTFDIEQGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQATNVR 64


>gi|149182243|ref|ZP_01860723.1| cold-shock domain family protein [Bacillus sp. SG-1]
 gi|148850012|gb|EDL64182.1| cold-shock domain family protein [Bacillus sp. SG-1]
          Length = 66

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ VT+D  +   
Sbjct: 1  MEHGKVKWFNSEKGFGFIERE----GGDDVFVHFSAIQGEGYKSLDEGQEVTFDIEEGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQATNVQ 64


>gi|37725747|gb|AAO32342.1| cold shock protein 2 [Streptomyces sp. AA8321]
          Length = 65

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW N +KG+GFI  +G    G DVF+H SA+ ++G  +L E Q VT+D  Q   
Sbjct: 1  MACGTVKWLNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVTFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENIT 65


>gi|297194957|ref|ZP_06912355.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152559|gb|EFH31845.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 67

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ VT+D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|163942598|ref|YP_001647482.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229014070|ref|ZP_04171193.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
 gi|229062554|ref|ZP_04199865.1| Cold shock protein cspB [Bacillus cereus AH603]
 gi|229135709|ref|ZP_04264485.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
 gi|229169605|ref|ZP_04297308.1| Cold shock protein cspB [Bacillus cereus AH621]
 gi|2493764|sp|Q45099|CSPD_BACCE RecName: Full=Cold shock-like protein CspD
 gi|1405476|emb|CAA63610.1| CspD protein [Bacillus cereus]
 gi|163864795|gb|ABY45854.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
 gi|228613880|gb|EEK71002.1| Cold shock protein cspB [Bacillus cereus AH621]
 gi|228647746|gb|EEL03805.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
 gi|228716728|gb|EEL68422.1| Cold shock protein cspB [Bacillus cereus AH603]
 gi|228747216|gb|EEL97096.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
          Length = 66

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ V+++ V +  
Sbjct: 1  MQTGKVKWFNGEKGFGFIEVE----GGEDVFVHFSAIQGDGFKTLEEGQEVSFEIV-DGN 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|229135998|ref|ZP_04264758.1| hypothetical protein bcere0014_48750 [Bacillus cereus BDRD-ST196]
 gi|228647456|gb|EEL03531.1| hypothetical protein bcere0014_48750 [Bacillus cereus BDRD-ST196]
          Length = 65

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EGQ V +D V + A G
Sbjct: 2  QGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 57 PQADNVVKL 65


>gi|255659158|ref|ZP_05404567.1| conserved domain protein [Mitsuokella multacida DSM 20544]
 gi|260848608|gb|EEX68615.1| conserved domain protein [Mitsuokella multacida DSM 20544]
          Length = 66

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P+KGYGFI  E     GDDVF+H SA+   G   L EGQ V ++ V+  A G 
Sbjct: 3  GKVKWFSPEKGYGFIARE----GGDDVFVHFSAIQDEGFKTLNEGQDVEFEIVEG-ARGP 57

Query: 65 YSAENLK 71
           +A  +K
Sbjct: 58 QAANVIK 64


>gi|254390979|ref|ZP_05006188.1| cold-shock DNA-binding domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
 gi|326445565|ref|ZP_08220299.1| cold-shock DNA-binding domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
 gi|197704675|gb|EDY50487.1| cold-shock DNA-binding domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
          Length = 70

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KGYGFITPE    SG D+F+H  A+   G  +L EGQ VT++ VQ   
Sbjct: 4  RQNGTVKWFNDEKGYGFITPE----SGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++++
Sbjct: 60 G--MQADRVQVL 69


>gi|163842703|ref|YP_001627107.1| ATP/GTP-binding motif-containing protein [Brucella suis ATCC
          23445]
 gi|163673426|gb|ABY37537.1| ATP/GTP-binding site motif A (P-loop) protein [Brucella suis ATCC
          23445]
          Length = 69

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI P+   +   DVF+H SAV  AGL +L +GQ V Y+ V +  
Sbjct: 1  MANGTVKFFNSTKGFGFIQPD---DGSSDVFVHISAVERAGLHSLVQGQKVGYEVVADRR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKSAAANLE 67


>gi|154248732|ref|YP_001409557.1| cold-shock DNA-binding domain-containing protein
          [Fervidobacterium nodosum Rt17-B1]
 gi|154152668|gb|ABS59900.1| putative cold-shock DNA-binding domain protein [Fervidobacterium
          nodosum Rt17-B1]
          Length = 66

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KGYGFIT     E G+D+F+H SA+ + G   L EG  V ++ VQN   G
Sbjct: 2  KGTVKWFDAKKGYGFIT----KEDGEDIFVHYSAIQAEGYKTLKEGDKVEFE-VQNGQKG 56

Query: 64 KYSAENLKLVP 74
            +A N+K++ 
Sbjct: 57 PQAA-NVKVIK 66


>gi|330992259|ref|ZP_08316207.1| putative cold shock protein y4cH [Gluconacetobacter sp. SXCC-1]
 gi|329760458|gb|EGG76954.1| putative cold shock protein y4cH [Gluconacetobacter sp. SXCC-1]
          Length = 68

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   +   D F+H SAV  AG   L EGQ VTYD  +   
Sbjct: 1  MAAGTVKWFNAQKGFGFIQPD---DGSADAFVHISAVEQAGQQTLNEGQAVTYDL-ERGR 56

Query: 62 NGKYSAENLKL 72
          NGK SA NLK+
Sbjct: 57 NGKSSAVNLKI 67


>gi|153875276|ref|ZP_02003150.1| Cold-shock DNA-binding domain protein [Beggiatoa sp. PS]
 gi|152068260|gb|EDN66850.1| Cold-shock DNA-binding domain protein [Beggiatoa sp. PS]
          Length = 67

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG+IKW+N  KG+GFI+P   T+ G DVF+H S +   G   L EGQ V ++  +   
Sbjct: 1  MMRGTIKWFNETKGFGFISP---TDDGRDVFVHYSCIQQKGFKTLKEGQEVEFEATEG-P 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPQA 61


>gi|227509605|ref|ZP_03939654.1| CspA family cold shock transcriptional regulator [Lactobacillus
          brevis subsp. gravesensis ATCC 27305]
 gi|227512551|ref|ZP_03942600.1| CspA family cold shock transcriptional regulator [Lactobacillus
          buchneri ATCC 11577]
 gi|227522777|ref|ZP_03952826.1| CspA family cold shock transcriptional regulator [Lactobacillus
          hilgardii ATCC 8290]
 gi|227084235|gb|EEI19547.1| CspA family cold shock transcriptional regulator [Lactobacillus
          buchneri ATCC 11577]
 gi|227090041|gb|EEI25353.1| CspA family cold shock transcriptional regulator [Lactobacillus
          hilgardii ATCC 8290]
 gi|227190967|gb|EEI71034.1| CspA family cold shock transcriptional regulator [Lactobacillus
          brevis subsp. gravesensis ATCC 27305]
          Length = 79

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 7/73 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ +G++KW+N DKGYGFIT +       DVF+H SA+   G  +L EGQ VT D V++ 
Sbjct: 12 IMKQGTVKWFNADKGYGFITTDDG-----DVFVHFSAINKDGFKSLDEGQHVTLD-VEDS 65

Query: 61 ANGKYSAENLKLV 73
            G  +A N+ +V
Sbjct: 66 DRGPQAA-NVTVV 77


>gi|309388475|gb|ADO76355.1| cold-shock DNA-binding protein family [Halanaerobium praevalens
          DSM 2228]
          Length = 67

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M++ G++KW++  KGYGFI  E     GDDVF+H SA+   G   L + Q V ++ V+ D
Sbjct: 1  MIYTGTVKWFDAKKGYGFIERE----DGDDVFVHFSAIEDEGFKTLEDEQEVEFEIVEGD 56

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 57 -RGPQAENVVKL 67


>gi|157691644|ref|YP_001486106.1| major cold shock protein [Bacillus pumilus SAFR-032]
 gi|157680402|gb|ABV61546.1| major cold shock protein [Bacillus pumilus SAFR-032]
          Length = 79

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ + 
Sbjct: 14 MLEGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN- 68

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 69 RGPQAANV 76


>gi|29375372|ref|NP_814526.1| cold shock domain-contain protein [Enterococcus faecalis V583]
 gi|227517748|ref|ZP_03947797.1| cold-shock protein [Enterococcus faecalis TX0104]
 gi|227554895|ref|ZP_03984942.1| cold-shock protein [Enterococcus faecalis HH22]
 gi|229546635|ref|ZP_04435360.1| cold-shock protein [Enterococcus faecalis TX1322]
 gi|229548721|ref|ZP_04437446.1| cold-shock protein [Enterococcus faecalis ATCC 29200]
 gi|255971235|ref|ZP_05421821.1| cold-shock protein [Enterococcus faecalis T1]
 gi|255973859|ref|ZP_05424445.1| cold-shock protein [Enterococcus faecalis T2]
 gi|256617665|ref|ZP_05474511.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
 gi|256761545|ref|ZP_05502125.1| cold-shock protein [Enterococcus faecalis T3]
 gi|256854357|ref|ZP_05559721.1| cold shock domain-contain protein [Enterococcus faecalis T8]
 gi|256957355|ref|ZP_05561526.1| cold-shock protein [Enterococcus faecalis DS5]
 gi|256959910|ref|ZP_05564081.1| cold-shock protein [Enterococcus faecalis Merz96]
 gi|256964386|ref|ZP_05568557.1| cold-shock protein [Enterococcus faecalis HIP11704]
 gi|257077649|ref|ZP_05572010.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|257081040|ref|ZP_05575401.1| cold shock domain-containing protein [Enterococcus faecalis
          E1Sol]
 gi|257083701|ref|ZP_05578062.1| cold shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|257086135|ref|ZP_05580496.1| cold-shock protein [Enterococcus faecalis D6]
 gi|257089207|ref|ZP_05583568.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257415348|ref|ZP_05592342.1| cold-shock protein [Enterococcus faecalis AR01/DG]
 gi|257418385|ref|ZP_05595379.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257421034|ref|ZP_05598024.1| cold shock protein [Enterococcus faecalis X98]
 gi|293385225|ref|ZP_06631042.1| cold shock protein B [Enterococcus faecalis R712]
 gi|293388340|ref|ZP_06632852.1| cold shock protein B [Enterococcus faecalis S613]
 gi|294781498|ref|ZP_06746837.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          PC1.1]
 gi|300859962|ref|ZP_07106050.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
 gi|307270162|ref|ZP_07551479.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX4248]
 gi|307271388|ref|ZP_07552663.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0855]
 gi|307276241|ref|ZP_07557370.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX2134]
 gi|307284456|ref|ZP_07564619.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0860]
 gi|307289526|ref|ZP_07569472.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0109]
 gi|307296199|ref|ZP_07576027.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0411]
 gi|312901759|ref|ZP_07761028.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0470]
 gi|312904195|ref|ZP_07763358.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0635]
 gi|312907148|ref|ZP_07766140.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          DAPTO 512]
 gi|312951852|ref|ZP_07770741.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0102]
 gi|312979273|ref|ZP_07790972.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          DAPTO 516]
 gi|29342832|gb|AAO80596.1| cold shock domain family protein [Enterococcus faecalis V583]
 gi|227074804|gb|EEI12767.1| cold-shock protein [Enterococcus faecalis TX0104]
 gi|227175977|gb|EEI56949.1| cold-shock protein [Enterococcus faecalis HH22]
 gi|229306158|gb|EEN72154.1| cold-shock protein [Enterococcus faecalis ATCC 29200]
 gi|229308202|gb|EEN74189.1| cold-shock protein [Enterococcus faecalis TX1322]
 gi|255962253|gb|EET94729.1| cold-shock protein [Enterococcus faecalis T1]
 gi|255966731|gb|EET97353.1| cold-shock protein [Enterococcus faecalis T2]
 gi|256597192|gb|EEU16368.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
 gi|256682796|gb|EEU22491.1| cold-shock protein [Enterococcus faecalis T3]
 gi|256709917|gb|EEU24961.1| cold shock domain-contain protein [Enterococcus faecalis T8]
 gi|256947851|gb|EEU64483.1| cold-shock protein [Enterococcus faecalis DS5]
 gi|256950406|gb|EEU67038.1| cold-shock protein [Enterococcus faecalis Merz96]
 gi|256954882|gb|EEU71514.1| cold-shock protein [Enterococcus faecalis HIP11704]
 gi|256985679|gb|EEU72981.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|256989070|gb|EEU76372.1| cold shock domain-containing protein [Enterococcus faecalis
          E1Sol]
 gi|256991731|gb|EEU79033.1| cold shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|256994165|gb|EEU81467.1| cold-shock protein [Enterococcus faecalis D6]
 gi|256998019|gb|EEU84539.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257157176|gb|EEU87136.1| cold-shock protein [Enterococcus faecalis ARO1/DG]
 gi|257160213|gb|EEU90173.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257162858|gb|EEU92818.1| cold shock protein [Enterococcus faecalis X98]
 gi|291077522|gb|EFE14886.1| cold shock protein B [Enterococcus faecalis R712]
 gi|291082282|gb|EFE19245.1| cold shock protein B [Enterococcus faecalis S613]
 gi|294451428|gb|EFG19891.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          PC1.1]
 gi|300850780|gb|EFK78529.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
 gi|306496073|gb|EFM65655.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0411]
 gi|306499544|gb|EFM68915.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0109]
 gi|306503264|gb|EFM72517.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0860]
 gi|306507097|gb|EFM76238.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX2134]
 gi|306511920|gb|EFM80915.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0855]
 gi|306513531|gb|EFM82146.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX4248]
 gi|310626859|gb|EFQ10142.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          DAPTO 512]
 gi|310630150|gb|EFQ13433.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0102]
 gi|310632460|gb|EFQ15743.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0635]
 gi|311287931|gb|EFQ66487.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          DAPTO 516]
 gi|311291228|gb|EFQ69784.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0470]
 gi|315027570|gb|EFT39502.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX2137]
 gi|315029859|gb|EFT41791.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX4000]
 gi|315031281|gb|EFT43213.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0017]
 gi|315035333|gb|EFT47265.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0027]
 gi|315145280|gb|EFT89296.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX2141]
 gi|315148239|gb|EFT92255.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX4244]
 gi|315151651|gb|EFT95667.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0012]
 gi|315153201|gb|EFT97217.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0031]
 gi|315154850|gb|EFT98866.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0043]
 gi|315159935|gb|EFU03952.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0312]
 gi|315161978|gb|EFU05995.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0645]
 gi|315164631|gb|EFU08648.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX1302]
 gi|315167012|gb|EFU11029.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX1341]
 gi|315170889|gb|EFU14906.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX1342]
 gi|315174689|gb|EFU18706.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX1346]
 gi|315573437|gb|EFU85628.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0309B]
 gi|315578025|gb|EFU90216.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0630]
 gi|315581320|gb|EFU93511.1| cold-shock DNA-binding domain protein [Enterococcus faecalis
          TX0309A]
 gi|323479972|gb|ADX79411.1| cold shock protein CspC [Enterococcus faecalis 62]
 gi|327534366|gb|AEA93200.1| cold shock protein B [Enterococcus faecalis OG1RF]
 gi|329577634|gb|EGG59065.1| cold shock protein CspA [Enterococcus faecalis TX1467]
          Length = 66

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+ S G   L EGQ VT+D  +   
Sbjct: 1  MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQSDGFKTLDEGQAVTFD-TEEGP 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGLQATNIVK 65


>gi|227519332|ref|ZP_03949381.1| cold shock protein CspC [Enterococcus faecalis TX0104]
 gi|227555460|ref|ZP_03985507.1| cold shock protein CspC [Enterococcus faecalis HH22]
 gi|229545427|ref|ZP_04434152.1| cold shock protein CspC [Enterococcus faecalis TX1322]
 gi|229549671|ref|ZP_04438396.1| cold shock protein CspC [Enterococcus faecalis ATCC 29200]
 gi|307268123|ref|ZP_07549510.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|307272817|ref|ZP_07554064.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|307275929|ref|ZP_07557062.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|307295893|ref|ZP_07575725.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|312902769|ref|ZP_07761973.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|312951269|ref|ZP_07770171.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|227073226|gb|EEI11189.1| cold shock protein CspC [Enterococcus faecalis TX0104]
 gi|227175400|gb|EEI56372.1| cold shock protein CspC [Enterococcus faecalis HH22]
 gi|229305151|gb|EEN71147.1| cold shock protein CspC [Enterococcus faecalis ATCC 29200]
 gi|229309463|gb|EEN75450.1| cold shock protein CspC [Enterococcus faecalis TX1322]
 gi|306496224|gb|EFM65803.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|306507259|gb|EFM76396.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|306510431|gb|EFM79454.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|306515513|gb|EFM84041.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|310630803|gb|EFQ14086.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|310633823|gb|EFQ17106.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|315025996|gb|EFT37928.1| major cold shock protein CspA [Enterococcus faecalis TX2137]
 gi|315028917|gb|EFT40849.1| major cold shock protein CspA [Enterococcus faecalis TX4000]
 gi|315033307|gb|EFT45239.1| major cold shock protein CspA [Enterococcus faecalis TX0017]
 gi|315034545|gb|EFT46477.1| major cold shock protein CspA [Enterococcus faecalis TX0027]
 gi|315143420|gb|EFT87436.1| major cold shock protein CspA [Enterococcus faecalis TX2141]
 gi|315147653|gb|EFT91669.1| major cold shock protein CspA [Enterococcus faecalis TX4244]
 gi|315157261|gb|EFU01278.1| major cold shock protein CspA [Enterococcus faecalis TX0043]
 gi|315159904|gb|EFU03921.1| major cold shock protein CspA [Enterococcus faecalis TX0312]
 gi|315161387|gb|EFU05404.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
 gi|315167485|gb|EFU11502.1| major cold shock protein CspA [Enterococcus faecalis TX1341]
 gi|315574539|gb|EFU86730.1| major cold shock protein CspA [Enterococcus faecalis TX0309B]
 gi|315576700|gb|EFU88891.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
 gi|315581819|gb|EFU94010.1| major cold shock protein CspA [Enterococcus faecalis TX0309A]
          Length = 73

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+ + G  +L EGQ VT+D  +   
Sbjct: 8  MNNGTVKWFNSDKGFGFIT----GEDGNDVFAHFSAIQADGFKSLEEGQAVTFDIEEGQR 63

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 64 G--MQAVNI 70


>gi|167564263|ref|ZP_02357179.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
          EO147]
 gi|167571414|ref|ZP_02364288.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
          C6786]
          Length = 67

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITPEG    G+D+F H S + S G   L E Q V ++ V+   
Sbjct: 1  MATGTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRSEGFKTLQENQKVEFE-VKTGP 56

Query: 62 NGKYSAENLKLV 73
           G  +A N+K +
Sbjct: 57 KGLQAA-NIKPL 67


>gi|269103742|ref|ZP_06156439.1| cold shock protein [Photobacterium damselae subsp. damselae CIP
          102761]
 gi|268163640|gb|EEZ42136.1| cold shock protein [Photobacterium damselae subsp. damselae CIP
          102761]
          Length = 69

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFI+ +     G DVF+H  A+AS G   L EGQ V++D  Q    G
Sbjct: 5  TGIVKWFNEEKGFGFISQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQGQ-KG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PQAANVVAL 69


>gi|226357786|ref|YP_002787526.1| cold shock protein [Deinococcus deserti VCD115]
 gi|226320029|gb|ACO48022.1| putative cold shock protein [Deinococcus deserti VCD115]
          Length = 87

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI     T  G DVF H SA++ +G   L EG  V ++  +   
Sbjct: 1  MPAGKVKWFNAEKGFGFIE----TPGGPDVFAHFSAISGSGFKKLNEGDEVEFELEEGQR 56

Query: 62 NGKYSAENLKLVPKS 76
               A+N+ +   +
Sbjct: 57 GKGPQAKNIVVTKAA 71


>gi|217970098|ref|YP_002355332.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
 gi|217507425|gb|ACK54436.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
          Length = 69

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G++KW+N  KG+GFITPEG    GDD+F H S + S G  +L E Q V ++ V+    
Sbjct: 4  QTGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIQSKGFKSLAENQRVEFE-VKTGPK 59

Query: 63 GKYSAE 68
          G  +A 
Sbjct: 60 GLQAAN 65


>gi|30261699|ref|NP_844076.1| cold shock protein CspB [Bacillus anthracis str. Ames]
 gi|47526914|ref|YP_018263.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184527|ref|YP_027779.1| cold shock protein CspB [Bacillus anthracis str. Sterne]
 gi|49480968|ref|YP_035816.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|65318968|ref|ZP_00391927.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012]
 gi|165869260|ref|ZP_02213919.1| cold shock protein CspB [Bacillus anthracis str. A0488]
 gi|167633426|ref|ZP_02391751.1| cold shock protein CspB [Bacillus anthracis str. A0442]
 gi|167639155|ref|ZP_02397428.1| cold shock protein CspB [Bacillus anthracis str. A0193]
 gi|170686113|ref|ZP_02877335.1| cold shock protein CspB [Bacillus anthracis str. A0465]
 gi|170706544|ref|ZP_02897004.1| cold shock protein CspB [Bacillus anthracis str. A0389]
 gi|177650384|ref|ZP_02933351.1| cold shock protein CspB [Bacillus anthracis str. A0174]
 gi|190566507|ref|ZP_03019425.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I]
 gi|196033540|ref|ZP_03100952.1| cold shock protein CspB [Bacillus cereus W]
 gi|196038892|ref|ZP_03106199.1| cold shock protein CspB [Bacillus cereus NVH0597-99]
 gi|196046644|ref|ZP_03113868.1| cold shock protein CspB [Bacillus cereus 03BB108]
 gi|225863558|ref|YP_002748936.1| cold shock protein CspB [Bacillus cereus 03BB102]
 gi|227815548|ref|YP_002815557.1| cold shock protein CspB [Bacillus anthracis str. CDC 684]
 gi|228914278|ref|ZP_04077893.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228945302|ref|ZP_04107657.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|229183890|ref|ZP_04311106.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1]
 gi|229602706|ref|YP_002866103.1| cold shock protein CspB [Bacillus anthracis str. A0248]
 gi|254683188|ref|ZP_05147049.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
          str. CNEVA-9066]
 gi|254723778|ref|ZP_05185564.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
          str. A1055]
 gi|254734540|ref|ZP_05192252.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
          str. Western North America USA6153]
 gi|254740949|ref|ZP_05198637.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
          str. Kruger B]
 gi|254755191|ref|ZP_05207225.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
          str. Vollum]
 gi|254759728|ref|ZP_05211752.1| cold-shock DNA-binding protein family protein [Bacillus anthracis
          str. Australia 94]
 gi|301053238|ref|YP_003791449.1| cold shock protein [Bacillus anthracis CI]
 gi|30255927|gb|AAP25562.1| cold shock protein CspB [Bacillus anthracis str. Ames]
 gi|47502062|gb|AAT30738.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178454|gb|AAT53830.1| cold shock protein CspB [Bacillus anthracis str. Sterne]
 gi|49332524|gb|AAT63170.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|164714700|gb|EDR20218.1| cold shock protein CspB [Bacillus anthracis str. A0488]
 gi|167512945|gb|EDR88318.1| cold shock protein CspB [Bacillus anthracis str. A0193]
 gi|167531464|gb|EDR94142.1| cold shock protein CspB [Bacillus anthracis str. A0442]
 gi|170128642|gb|EDS97509.1| cold shock protein CspB [Bacillus anthracis str. A0389]
 gi|170669810|gb|EDT20551.1| cold shock protein CspB [Bacillus anthracis str. A0465]
 gi|172083528|gb|EDT68588.1| cold shock protein CspB [Bacillus anthracis str. A0174]
 gi|190562642|gb|EDV16609.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I]
 gi|195993974|gb|EDX57930.1| cold shock protein CspB [Bacillus cereus W]
 gi|196022577|gb|EDX61260.1| cold shock protein CspB [Bacillus cereus 03BB108]
 gi|196030037|gb|EDX68637.1| cold shock protein CspB [Bacillus cereus NVH0597-99]
 gi|225786101|gb|ACO26318.1| cold shock protein CspB [Bacillus cereus 03BB102]
 gi|227005644|gb|ACP15387.1| cold shock protein CspB [Bacillus anthracis str. CDC 684]
 gi|228599542|gb|EEK57146.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1]
 gi|228814274|gb|EEM60540.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228845272|gb|EEM90308.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229267114|gb|ACQ48751.1| cold shock protein CspB [Bacillus anthracis str. A0248]
 gi|300375407|gb|ADK04311.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
          Length = 65

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|323160675|gb|EFZ46614.1| cold shock-like protein cspG [Escherichia coli E128010]
          Length = 70

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H SA+ + G  +L EGQ V++   ++ A G
Sbjct: 6  TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFSI-ESGAKG 61

Query: 64 KYSAENLK 71
            +A N+ 
Sbjct: 62 P-AAGNVT 68


>gi|284990776|ref|YP_003409330.1| cold-shock DNA-binding domain-containing protein
          [Geodermatophilus obscurus DSM 43160]
 gi|284064021|gb|ADB74959.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
          DSM 43160]
          Length = 310

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KG+GFI P+   + G DVF+H SA+A   G   L EGQ V ++  Q  
Sbjct: 1  MPQGTVKWFNAEKGFGFIEPD---DGGQDVFVHFSAIADEGGFRTLDEGQQVEFEASQGQ 57

Query: 61 ANGKYSAENLKLV 73
                A++++ V
Sbjct: 58 RG--LQADSVRPV 68



 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDAN 62
            G++KW+N +KG+GFI  +   + G DVF+H SA+    G  +L EGQ V ++   +   
Sbjct: 245 NGTVKWFNAEKGFGFIEAD---DGGPDVFVHFSAISDRGGYRSLDEGQRVEFE-ASDGQR 300

Query: 63  GKYS 66
           G+ +
Sbjct: 301 GRQA 304



 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDANGKY 65
           + W++ DKG+GFI P+   E G DVF+H S +A + G  +L EGQ V +   Q       
Sbjct: 122 VTWFDNDKGFGFIQPD---EDGPDVFVHFSQIADSGGYRSLDEGQRVEFAVTQGQRG--P 176

Query: 66  SAENLK 71
            AE+++
Sbjct: 177 QAEDVR 182


>gi|227509828|ref|ZP_03939877.1| CspA family cold shock transcriptional regulator [Lactobacillus
          brevis subsp. gravesensis ATCC 27305]
 gi|227512764|ref|ZP_03942813.1| CspA family cold shock transcriptional regulator [Lactobacillus
          buchneri ATCC 11577]
 gi|227522888|ref|ZP_03952937.1| CspA family cold shock transcriptional regulator [Lactobacillus
          hilgardii ATCC 8290]
 gi|227083964|gb|EEI19276.1| CspA family cold shock transcriptional regulator [Lactobacillus
          buchneri ATCC 11577]
 gi|227089917|gb|EEI25229.1| CspA family cold shock transcriptional regulator [Lactobacillus
          hilgardii ATCC 8290]
 gi|227190752|gb|EEI70819.1| CspA family cold shock transcriptional regulator [Lactobacillus
          brevis subsp. gravesensis ATCC 27305]
          Length = 66

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKGYGFIT     E+G DVF+H SA+ + G   L EGQ VT D  + D 
Sbjct: 1  MEQGTVKWFNGDKGYGFIT----LENGSDVFVHFSAINADGFKTLEEGQKVTLDVEKGD- 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGLQAANV 63


>gi|27467496|ref|NP_764133.1| cold-shock protein C [Staphylococcus epidermidis ATCC 12228]
 gi|57866355|ref|YP_188058.1| CSD family cold shock protein [Staphylococcus epidermidis RP62A]
 gi|242242178|ref|ZP_04796623.1| cold-shock protein [Staphylococcus epidermidis W23144]
 gi|251810255|ref|ZP_04824728.1| cold-shock protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875621|ref|ZP_06284492.1| cold-shock DNA-binding domain protein [Staphylococcus epidermidis
          SK135]
 gi|293368262|ref|ZP_06614891.1| cold-shock protein [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315039|gb|AAO04175.1|AE016745_274 cold-shock protein C [Staphylococcus epidermidis ATCC 12228]
 gi|57637013|gb|AAW53801.1| cold shock protein, CSD family [Staphylococcus epidermidis RP62A]
 gi|242234351|gb|EES36663.1| cold-shock protein [Staphylococcus epidermidis W23144]
 gi|251806307|gb|EES58964.1| cold-shock protein [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295648|gb|EFA88171.1| cold-shock DNA-binding domain protein [Staphylococcus epidermidis
          SK135]
 gi|291317685|gb|EFE58102.1| cold-shock protein [Staphylococcus epidermidis M23864:W2(grey)]
 gi|319401831|gb|EFV90039.1| cold shock protein cspC [Staphylococcus epidermidis FRI909]
 gi|329723353|gb|EGG59883.1| major cold shock protein CspA [Staphylococcus epidermidis VCU144]
 gi|329736857|gb|EGG73122.1| major cold shock protein CspA [Staphylococcus epidermidis VCU028]
 gi|329737950|gb|EGG74174.1| major cold shock protein CspA [Staphylococcus epidermidis VCU045]
          Length = 66

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E    +G DVF+H SA+   G  +L EGQ V +D V+ + 
Sbjct: 1  MNNGTVKWFNAEKGFGFIERE----NGGDVFVHFSAIVEDGYKSLEEGQSVEFDIVEGE- 55

Query: 62 NGKYSAENLKL 72
           G+ +A  +K+
Sbjct: 56 RGEQAANVVKM 66


>gi|218676106|ref|YP_002394925.1| cold shock protein [Vibrio splendidus LGP32]
 gi|218324374|emb|CAV25748.1| cold shock protein [Vibrio splendidus LGP32]
          Length = 76

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          + G++KW+N +KG+GFI+ +     G DVF+H  A+AS G   L EGQ V+++ V+N   
Sbjct: 11 NTGTVKWFNEEKGFGFISQD---NGGADVFVHFRAIASEGFKTLKEGQKVSFE-VENGQK 66

Query: 63 GKYSAENL 70
          G  +A  +
Sbjct: 67 GLQAANVV 74


>gi|46199928|ref|YP_005595.1| cold shock protein [Thermus thermophilus HB27]
 gi|55980328|ref|YP_143625.1| cold shock protein [Thermus thermophilus HB8]
 gi|46197555|gb|AAS81968.1| cold shock protein [Thermus thermophilus HB27]
 gi|55771741|dbj|BAD70182.1| cold shock protein [Thermus thermophilus HB8]
          Length = 68

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G +KW+N +KGYGFI  E     G DVF+H SA+ + G   L+EG+ V ++      
Sbjct: 1  MNKGIVKWFNAEKGYGFIQQE----EGPDVFVHFSAIEADGFRTLSEGERVEFEVEPGRN 56

Query: 62 NGKYSAENLKLV 73
               A  ++ +
Sbjct: 57 GKGPQARRVRRL 68


>gi|293396765|ref|ZP_06641041.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
 gi|291421029|gb|EFE94282.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
          Length = 69

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI      + G DVF+H SA+ + G   L EGQ V Y   Q+   
Sbjct: 4  KTGQVKWFNESKGFGFIEQH---DGGKDVFVHFSAIMTDGFKTLAEGQRVEYTI-QDSPR 59

Query: 63 GKYSAENLKL 72
          G  +A  + L
Sbjct: 60 GPAAANVVAL 69


>gi|167037174|ref|YP_001664752.1| cold-shock DNA-binding domain-containing protein
          [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040687|ref|YP_001663672.1| cold-shock DNA-binding domain-containing protein
          [Thermoanaerobacter sp. X514]
 gi|300914728|ref|ZP_07132044.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp.
          X561]
 gi|307724038|ref|YP_003903789.1| cold-shock DNA-binding domain-containing protein
          [Thermoanaerobacter sp. X513]
 gi|320115592|ref|YP_004185751.1| Cold-shock protein DNA-binding protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
 gi|166854927|gb|ABY93336.1| putative cold-shock DNA-binding domain protein
          [Thermoanaerobacter sp. X514]
 gi|166856008|gb|ABY94416.1| putative cold-shock DNA-binding domain protein
          [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300889663|gb|EFK84809.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp.
          X561]
 gi|307581099|gb|ADN54498.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp.
          X513]
 gi|319928683|gb|ADV79368.1| Cold-shock protein DNA-binding protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
          Length = 67

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KGYGFI  E     G DVF+H SA+   G   L EGQ V ++ V+   
Sbjct: 1  MVRGKVKWFNAEKGYGFIERE----DGTDVFVHYSAIEGDGFKTLEEGQKVEFEVVEATK 56

Query: 62 NGKYS 66
            + S
Sbjct: 57 GPQAS 61


>gi|238920340|ref|YP_002933855.1| hypothetical protein NT01EI_2450 [Edwardsiella ictaluri 93-146]
 gi|269139515|ref|YP_003296216.1| old-shock domain family protein [Edwardsiella tarda EIB202]
 gi|238869909|gb|ACR69620.1| conserved domain protein [Edwardsiella ictaluri 93-146]
 gi|267985176|gb|ACY85005.1| old-shock domain family protein [Edwardsiella tarda EIB202]
 gi|304559404|gb|ADM42068.1| putative cold shock protein CspE2 [Edwardsiella tarda FL6-60]
          Length = 69

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI      + G DVF+H SA+   G   L EGQ V Y   Q+   
Sbjct: 4  KTGQVKWFNESKGFGFIEQH---DGGKDVFVHFSAITGDGFKTLAEGQRVEYTI-QDSPR 59

Query: 63 GKYSAENLKL 72
          G  +A  + L
Sbjct: 60 GPAAANVVAL 69


>gi|304413830|ref|ZP_07395247.1| Cold shock protein [Candidatus Regiella insecticola LSR1]
 gi|304283550|gb|EFL91945.1| Cold shock protein [Candidatus Regiella insecticola LSR1]
          Length = 88

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFITP+  +    DVF+H SA+   G   L EGQ V +D  +    G
Sbjct: 24 KGSVKWFNEAKGFGFITPDDKS---KDVFVHFSAIQGDGFKTLGEGQQVEFDIEEG-KKG 79

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 80 PAAINVVTL 88


>gi|304395415|ref|ZP_07377298.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|308185821|ref|YP_003929952.1| Cold shock-like protein cspG (CPS-G) [Pantoea vagans C9-1]
 gi|304356709|gb|EFM21073.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|308056331|gb|ADO08503.1| Cold shock-like protein cspG (CPS-G) [Pantoea vagans C9-1]
          Length = 70

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW+N +KG+GFI+P    +   DVF+H SA+      +L EGQ V +  V+N A G
Sbjct: 6  RGTVKWFNAEKGFGFISP---ADGSKDVFVHFSAIQGTDFRSLDEGQQVEF-TVENGAKG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVVGL 70


>gi|281492698|ref|YP_003354678.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|281376355|gb|ADA65845.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT    +E G D+F H S++ S G  +L EGQ V +D  +   
Sbjct: 1  MANGTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEGQKVEFDVEEGQR 56

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 57 G--PQAVNIT 64


>gi|81428382|ref|YP_395382.1| cold shock protein CspA family protein [Lactobacillus sakei
          subsp. sakei 23K]
 gi|78610024|emb|CAI55072.1| Similar to cold shock protein, CspA family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ EG     DD+F+H SA+   G  +L EGQ V +D V+   
Sbjct: 1  MEKGTVKWFNNEKGFGFISVEGQ----DDIFVHFSAIQDEGFKSLEEGQAVEFDIVEGTR 56

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 57 G--AQAANVKKL 66


>gi|15804102|ref|NP_290141.1| major cold shock protein [Escherichia coli O157:H7 EDL933]
 gi|15833695|ref|NP_312468.1| major cold shock protein [Escherichia coli O157:H7 str. Sakai]
 gi|16131427|ref|NP_418012.1| RNA chaperone and anti-terminator, cold-inducible [Escherichia
          coli str. K-12 substr. MG1655]
 gi|16762659|ref|NP_458276.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|24114823|ref|NP_709333.1| major cold shock protein [Shigella flexneri 2a str. 301]
 gi|26250199|ref|NP_756239.1| major cold shock protein [Escherichia coli CFT073]
 gi|29144146|ref|NP_807488.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|30065165|ref|NP_839336.1| major cold shock protein [Shigella flexneri 2a str. 2457T]
 gi|56415543|ref|YP_152618.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62182151|ref|YP_218568.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|74314190|ref|YP_312609.1| major cold shock protein [Shigella sonnei Ss046]
 gi|82545921|ref|YP_409868.1| major cold shock protein [Shigella boydii Sb227]
 gi|82779380|ref|YP_405729.1| major cold shock protein [Shigella dysenteriae Sd197]
 gi|89110458|ref|AP_004238.1| major cold shock protein [Escherichia coli str. K-12 substr.
          W3110]
 gi|91213070|ref|YP_543056.1| major cold shock protein [Escherichia coli UTI89]
 gi|110643804|ref|YP_671534.1| major cold shock protein [Escherichia coli 536]
 gi|110807352|ref|YP_690872.1| major cold shock protein [Shigella flexneri 5 str. 8401]
 gi|152972426|ref|YP_001337572.1| major cold shock protein [Klebsiella pneumoniae subsp. pneumoniae
          MGH 78578]
 gi|157149172|ref|YP_001456492.1| major cold shock protein [Citrobacter koseri ATCC BAA-895]
 gi|157155319|ref|YP_001465032.1| major cold shock protein [Escherichia coli E24377A]
 gi|157163031|ref|YP_001460349.1| major cold shock protein [Escherichia coli HS]
 gi|161616716|ref|YP_001590682.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Paratyphi B str. SPB7]
 gi|168232491|ref|ZP_02657549.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|168235252|ref|ZP_02660310.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|170018215|ref|YP_001723169.1| major cold shock protein [Escherichia coli ATCC 8739]
 gi|170083064|ref|YP_001732384.1| major cold shock protein [Escherichia coli str. K-12 substr.
          DH10B]
 gi|170683736|ref|YP_001745842.1| major cold shock protein [Escherichia coli SMS-3-5]
 gi|170766842|ref|ZP_02901295.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
 gi|187730606|ref|YP_001882251.1| major cold shock protein [Shigella boydii CDC 3083-94]
 gi|187775668|ref|ZP_02797489.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|188024513|ref|ZP_02771920.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|188493329|ref|ZP_03000599.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|189010109|ref|ZP_02804714.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189401797|ref|ZP_02778383.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189402745|ref|ZP_02790978.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189403738|ref|ZP_02784655.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|189404722|ref|ZP_02810435.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC869]
 gi|189405473|ref|ZP_02822401.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC508]
 gi|191165334|ref|ZP_03027177.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|191170525|ref|ZP_03032078.1| cold shock DNA-binding protein [Escherichia coli F11]
 gi|193061815|ref|ZP_03042912.1| cold shock DNA-binding protein [Escherichia coli E22]
 gi|193068536|ref|ZP_03049498.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194427483|ref|ZP_03060032.1| cold shock DNA-binding protein [Escherichia coli B171]
 gi|194431091|ref|ZP_03063384.1| cold shock DNA-binding protein [Shigella dysenteriae 1012]
 gi|194435705|ref|ZP_03067808.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|194443289|ref|YP_002042899.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194450219|ref|YP_002047680.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194469960|ref|ZP_03075944.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194736943|ref|YP_002116583.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195935087|ref|ZP_03080469.1| major cold shock protein [Escherichia coli O157:H7 str. EC4024]
 gi|197249244|ref|YP_002148580.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197262466|ref|ZP_03162540.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197364470|ref|YP_002144107.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|198241852|ref|YP_002217610.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|200386615|ref|ZP_03213227.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204928494|ref|ZP_03219693.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205354743|ref|YP_002228544.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205356895|ref|ZP_02342874.2| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205357597|ref|ZP_02571979.2| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205359051|ref|ZP_02666750.2| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|205359542|ref|ZP_02830526.2| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205360333|ref|ZP_02682580.2| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|206575782|ref|YP_002236070.1| cold shock-like protein CspA [Klebsiella pneumoniae 342]
 gi|207858886|ref|YP_002245537.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|208807153|ref|ZP_03249490.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208812180|ref|ZP_03253509.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208821921|ref|ZP_03262241.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209400365|ref|YP_002273042.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4115]
 gi|209921021|ref|YP_002295105.1| major cold shock protein [Escherichia coli SE11]
 gi|213022040|ref|ZP_03336487.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
 gi|213163585|ref|ZP_03349295.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
 gi|213422161|ref|ZP_03355227.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
 gi|213428098|ref|ZP_03360848.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E02-1180]
 gi|213582746|ref|ZP_03364572.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
 gi|213607995|ref|ZP_03368821.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
 gi|213650792|ref|ZP_03380845.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
 gi|213852850|ref|ZP_03382382.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
 gi|215488841|ref|YP_002331272.1| major cold shock protein [Escherichia coli O127:H6 str. E2348/69]
 gi|217326515|ref|ZP_03442599.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          TW14588]
 gi|218550842|ref|YP_002384633.1| major cold shock protein [Escherichia fergusonii ATCC 35469]
 gi|218556117|ref|YP_002389030.1| major cold shock protein [Escherichia coli IAI1]
 gi|218560633|ref|YP_002393546.1| major cold shock protein [Escherichia coli S88]
 gi|218691847|ref|YP_002400059.1| major cold shock protein [Escherichia coli ED1a]
 gi|218697273|ref|YP_002404940.1| major cold shock protein [Escherichia coli 55989]
 gi|218702321|ref|YP_002409950.1| major cold shock protein [Escherichia coli IAI39]
 gi|218707191|ref|YP_002414710.1| major cold shock protein [Escherichia coli UMN026]
 gi|224585449|ref|YP_002639248.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|227883723|ref|ZP_04001528.1| major cold shock protein [Escherichia coli 83972]
 gi|237703327|ref|ZP_04533808.1| major cold shock protein [Escherichia sp. 3_2_53FAA]
 gi|237728871|ref|ZP_04559352.1| major cold shock protein [Citrobacter sp. 30_2]
 gi|238897019|ref|YP_002921765.1| major cold shock protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238902644|ref|YP_002928440.1| major cold shock protein [Escherichia coli BW2952]
 gi|238910323|ref|ZP_04654160.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Tennessee str. CDC07-0191]
 gi|253771610|ref|YP_003034441.1| major cold shock protein [Escherichia coli 'BL21-Gold(DE3)pLysS
          AG']
 gi|254038740|ref|ZP_04872796.1| major cold shock protein [Escherichia sp. 1_1_43]
 gi|254163479|ref|YP_003046587.1| major cold shock protein [Escherichia coli B str. REL606]
 gi|254795513|ref|YP_003080350.1| major cold shock protein [Escherichia coli O157:H7 str. TW14359]
 gi|256020905|ref|ZP_05434770.1| major cold shock protein [Shigella sp. D9]
 gi|256025717|ref|ZP_05439582.1| major cold shock protein [Escherichia sp. 4_1_40B]
 gi|260846729|ref|YP_003224507.1| major cold shock protein CspA [Escherichia coli O103:H2 str.
          12009]
 gi|260858048|ref|YP_003231939.1| major cold shock protein CspA [Escherichia coli O26:H11 str.
          11368]
 gi|260870287|ref|YP_003236689.1| major cold shock protein CspA [Escherichia coli O111:H- str.
          11128]
 gi|261224875|ref|ZP_05939156.1| major cold shock protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254226|ref|ZP_05946759.1| major cold shock protein CspA [Escherichia coli O157:H7 str.
          FRIK966]
 gi|283835935|ref|ZP_06355676.1| putative cold shock protein [Citrobacter youngae ATCC 29220]
 gi|288933068|ref|YP_003437127.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|289805377|ref|ZP_06536006.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
 gi|289828312|ref|ZP_06546237.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-3139]
 gi|290511862|ref|ZP_06551230.1| cold shock protein cspA [Klebsiella sp. 1_1_55]
 gi|291284933|ref|YP_003501751.1| Cold shock protein cspA [Escherichia coli O55:H7 str. CB9615]
 gi|293407179|ref|ZP_06651103.1| cold shock protein CspB [Escherichia coli FVEC1412]
 gi|293412991|ref|ZP_06655659.1| cold shock protein cspA [Escherichia coli B354]
 gi|293417005|ref|ZP_06659642.1| cold shock protein cspA [Escherichia coli B185]
 gi|293453866|ref|ZP_06664285.1| cold shock protein cspA [Escherichia coli B088]
 gi|298382928|ref|ZP_06992523.1| cold shock protein CspB [Escherichia coli FVEC1302]
 gi|300815217|ref|ZP_07095442.1| transcriptional repressor activity CueR [Escherichia coli MS
          107-1]
 gi|300822041|ref|ZP_07102184.1| transcriptional repressor activity CueR [Escherichia coli MS
          119-7]
 gi|300898732|ref|ZP_07117043.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300902747|ref|ZP_07120703.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300920437|ref|ZP_07136871.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300925632|ref|ZP_07141498.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|300928228|ref|ZP_07143767.1| transcriptional repressor activity CueR [Escherichia coli MS
          187-1]
 gi|300937162|ref|ZP_07152015.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|300950904|ref|ZP_07164783.1| transcriptional repressor activity CueR [Escherichia coli MS
          116-1]
 gi|300955049|ref|ZP_07167457.1| transcriptional repressor activity CueR [Escherichia coli MS
          175-1]
 gi|300971382|ref|ZP_07171451.1| transcriptional repressor activity CueR [Escherichia coli MS
          45-1]
 gi|300976956|ref|ZP_07173691.1| transcriptional repressor activity CueR [Escherichia coli MS
          200-1]
 gi|301026237|ref|ZP_07189700.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|301028176|ref|ZP_07191447.1| transcriptional repressor activity CueR [Escherichia coli MS
          196-1]
 gi|301047090|ref|ZP_07194190.1| transcriptional repressor activity CueR [Escherichia coli MS
          185-1]
 gi|301304609|ref|ZP_07210718.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|301646011|ref|ZP_07245917.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|306816090|ref|ZP_07450228.1| major cold shock protein [Escherichia coli NC101]
 gi|307140246|ref|ZP_07499602.1| major cold shock protein [Escherichia coli H736]
 gi|307314309|ref|ZP_07593916.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|309787759|ref|ZP_07682370.1| cold shock-like protein cspG [Shigella dysenteriae 1617]
 gi|309796198|ref|ZP_07690609.1| transcriptional repressor activity CueR [Escherichia coli MS
          145-7]
 gi|312968101|ref|ZP_07782312.1| cold shock-like protein cspG [Escherichia coli 2362-75]
 gi|312972169|ref|ZP_07786343.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|329999877|ref|ZP_08303546.1| cold shock protein [Klebsiella sp. MS 92-3]
 gi|331644267|ref|ZP_08345396.1| conserved domain protein [Escherichia coli H736]
 gi|331649387|ref|ZP_08350473.1| conserved domain protein [Escherichia coli M605]
 gi|331655193|ref|ZP_08356192.1| conserved domain protein [Escherichia coli M718]
 gi|331659872|ref|ZP_08360810.1| conserved domain protein [Escherichia coli TA206]
 gi|331665179|ref|ZP_08366080.1| conserved domain protein [Escherichia coli TA143]
 gi|331670390|ref|ZP_08371229.1| conserved domain protein [Escherichia coli TA271]
 gi|331675046|ref|ZP_08375803.1| conserved domain protein [Escherichia coli TA280]
 gi|331679637|ref|ZP_08380307.1| conserved domain protein [Escherichia coli H591]
 gi|331685219|ref|ZP_08385805.1| conserved domain protein [Escherichia coli H299]
 gi|332282124|ref|ZP_08394537.1| major cold shock protein [Shigella sp. D9]
 gi|76364240|sp|P0A9X9|CSPA_ECOLI RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|76364241|sp|P0A9Y5|CSPA_SALEN RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|76364242|sp|P0A9Y2|CSPA_SALTY RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|76364243|sp|P0A9Y4|CSPA_SHIFL RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|85687548|sp|P0A9Y1|CSPA_ECO57 RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|85687549|sp|P0A9Y0|CSPA_ECOL6 RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|85687550|sp|P0A9Y3|CSPA_SALTI RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName:
          Full=7.4 kDa cold shock protein; AltName: Full=CS7.4
 gi|25296126|pir||AG0981 cold shock protein [imported] - Salmonella enterica subsp.
          enterica serovar Typhi (strain CT18)
 gi|306991504|pdb|2L15|A Chain A, Solution Structure Of Cold Shock Protein Cspa Using
          Combined Nmr And Cs-Rosetta Method
 gi|12518291|gb|AAG58705.1|AE005582_8 cold shock protein 7.4, transcriptional activator of hns
          [Escherichia coli O157:H7 str. EDL933]
 gi|26110628|gb|AAN82813.1|AE016768_231 Cold shock protein cspA [Escherichia coli CFT073]
 gi|145633|gb|AAA23617.1| cold shock protein (cspA) [Escherichia coli]
 gi|466694|gb|AAB18533.1| cold regulated [Escherichia coli str. K-12 substr. MG1655]
 gi|1789979|gb|AAC76580.1| RNA chaperone and anti-terminator, cold-inducible [Escherichia
          coli str. K-12 substr. MG1655]
 gi|2353338|gb|AAB69447.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Enteritidis]
 gi|2970683|gb|AAC06036.1| cold shock protein A [Salmonella enterica subsp. enterica serovar
          Typhimurium]
 gi|13363915|dbj|BAB37864.1| cold shock protein 7.4 [Escherichia coli O157:H7 str. Sakai]
 gi|16422214|gb|AAL22509.1| major cold shock protein 7.4 [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|16504965|emb|CAD07979.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi]
 gi|24054054|gb|AAN45040.1| cold shock protein 7.4, transcriptional activator of hns
          [Shigella flexneri 2a str. 301]
 gi|29139783|gb|AAO71348.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
 gi|30043427|gb|AAP19147.1| cold shock protein 7.4, transcriptional activator of hns
          [Shigella flexneri 2a str. 2457T]
 gi|56129800|gb|AAV79306.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|62129784|gb|AAX67487.1| Cold shock protein cspA (CSP-A) [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|73857667|gb|AAZ90374.1| cold shock protein 7.4, transcriptional activator of hns
          [Shigella sonnei Ss046]
 gi|81243528|gb|ABB64238.1| cold shock protein 7.4 [Shigella dysenteriae Sd197]
 gi|81247332|gb|ABB68040.1| cold shock protein 7.4 [Shigella boydii Sb227]
 gi|85676489|dbj|BAE77739.1| major cold shock protein [Escherichia coli str. K12 substr.
          W3110]
 gi|91074644|gb|ABE09525.1| cold shock protein 7.4, transcriptional activator of hns
          [Escherichia coli UTI89]
 gi|110345396|gb|ABG71633.1| cold shock protein CspA [Escherichia coli 536]
 gi|110616900|gb|ABF05567.1| Cold shock protein cspA [Shigella flexneri 5 str. 8401]
 gi|150957275|gb|ABR79305.1| cold shock protein 7.4, transcriptional activator of hns
          [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|157068711|gb|ABV07966.1| cold shock DNA-binding protein [Escherichia coli HS]
 gi|157077349|gb|ABV17057.1| cold shock DNA-binding protein [Escherichia coli E24377A]
 gi|157086377|gb|ABV16055.1| hypothetical protein CKO_05012 [Citrobacter koseri ATCC BAA-895]
 gi|161366080|gb|ABX69848.1| hypothetical protein SPAB_04535 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|169753143|gb|ACA75842.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|169890899|gb|ACB04606.1| major cold shock protein [Escherichia coli str. K-12 substr.
          DH10B]
 gi|170124280|gb|EDS93211.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
 gi|170521454|gb|ACB19632.1| cold shock DNA-binding protein [Escherichia coli SMS-3-5]
 gi|187427598|gb|ACD06872.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94]
 gi|187771551|gb|EDU35395.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|188018410|gb|EDU56532.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|188488528|gb|EDU63631.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|189002424|gb|EDU71410.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189358854|gb|EDU77273.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189364591|gb|EDU83010.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189369849|gb|EDU88265.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|189374634|gb|EDU93050.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC869]
 gi|189379895|gb|EDU98311.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC508]
 gi|190904736|gb|EDV64442.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|190909333|gb|EDV68919.1| cold shock DNA-binding protein [Escherichia coli F11]
 gi|192932605|gb|EDV85202.1| cold shock DNA-binding protein [Escherichia coli E22]
 gi|192958187|gb|EDV88628.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194401952|gb|ACF62174.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194408523|gb|ACF68742.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194414523|gb|EDX30796.1| cold shock DNA-binding protein [Escherichia coli B171]
 gi|194420546|gb|EDX36622.1| cold shock DNA-binding protein [Shigella dysenteriae 1012]
 gi|194425248|gb|EDX41232.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|194456324|gb|EDX45163.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194712445|gb|ACF91666.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|197095947|emb|CAR61529.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|197212947|gb|ACH50344.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197240721|gb|EDY23341.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197291255|gb|EDY30607.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|197936368|gb|ACH73701.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|199603713|gb|EDZ02258.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204321927|gb|EDZ07125.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205274524|emb|CAR39563.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|205325852|gb|EDZ13691.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205330662|gb|EDZ17426.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333305|gb|EDZ20069.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|205338837|gb|EDZ25601.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|205344312|gb|EDZ31076.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205350328|gb|EDZ36959.1| cold shock DNA-binding protein [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|206564840|gb|ACI06616.1| cold shock-like protein CspA [Klebsiella pneumoniae 342]
 gi|206710689|emb|CAR35049.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|208726954|gb|EDZ76555.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208733457|gb|EDZ82144.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208742044|gb|EDZ89726.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209161765|gb|ACI39198.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4115]
 gi|209755208|gb|ACI75916.1| cold shock protein 7.4 [Escherichia coli]
 gi|209755210|gb|ACI75917.1| cold shock protein 7.4 [Escherichia coli]
 gi|209755212|gb|ACI75918.1| cold shock protein 7.4 [Escherichia coli]
 gi|209755214|gb|ACI75919.1| cold shock protein 7.4 [Escherichia coli]
 gi|209755216|gb|ACI75920.1| cold shock protein 7.4 [Escherichia coli]
 gi|209914280|dbj|BAG79354.1| cold shock protein [Escherichia coli SE11]
 gi|215266913|emb|CAS11356.1| major cold shock protein [Escherichia coli O127:H6 str. E2348/69]
 gi|217322736|gb|EEC31160.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          TW14588]
 gi|218354005|emb|CAV00495.1| major cold shock protein [Escherichia coli 55989]
 gi|218358383|emb|CAQ91030.1| major cold shock protein [Escherichia fergusonii ATCC 35469]
 gi|218362885|emb|CAR00519.1| major cold shock protein [Escherichia coli IAI1]
 gi|218367402|emb|CAR05184.1| major cold shock protein [Escherichia coli S88]
 gi|218372307|emb|CAR20172.1| major cold shock protein [Escherichia coli IAI39]
 gi|218429411|emb|CAR10372.2| major cold shock protein [Escherichia coli ED1a]
 gi|218434288|emb|CAR15210.1| major cold shock protein [Escherichia coli UMN026]
 gi|222035271|emb|CAP78016.1| Cold shock protein cspA [Escherichia coli LF82]
 gi|224469977|gb|ACN47807.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|226839246|gb|EEH71269.1| major cold shock protein [Escherichia sp. 1_1_43]
 gi|226902591|gb|EEH88850.1| major cold shock protein [Escherichia sp. 3_2_53FAA]
 gi|226909493|gb|EEH95411.1| major cold shock protein [Citrobacter sp. 30_2]
 gi|227839303|gb|EEJ49769.1| major cold shock protein [Escherichia coli 83972]
 gi|238549347|dbj|BAH65698.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
 gi|238861704|gb|ACR63702.1| major cold shock protein [Escherichia coli BW2952]
 gi|242379073|emb|CAQ33874.1| CspA transcriptional activator [Escherichia coli BL21(DE3)]
 gi|253322654|gb|ACT27256.1| cold-shock DNA-binding domain protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253975380|gb|ACT41051.1| major cold shock protein [Escherichia coli B str. REL606]
 gi|253979536|gb|ACT45206.1| major cold shock protein [Escherichia coli BL21(DE3)]
 gi|254594913|gb|ACT74274.1| major cold shock protein [Escherichia coli O157:H7 str. TW14359]
 gi|257756697|dbj|BAI28199.1| major cold shock protein CspA [Escherichia coli O26:H11 str.
          11368]
 gi|257761876|dbj|BAI33373.1| major cold shock protein CspA [Escherichia coli O103:H2 str.
          12009]
 gi|257766643|dbj|BAI38138.1| major cold shock protein CspA [Escherichia coli O111:H- str.
          11128]
 gi|260447428|gb|ACX37850.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|261248799|emb|CBG26652.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. D23580]
 gi|267995899|gb|ACY90784.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|281180601|dbj|BAI56931.1| cold shock protein [Escherichia coli SE15]
 gi|281602915|gb|ADA75899.1| Cold-shock DNA-binding protein family [Shigella flexneri 2002017]
 gi|284923590|emb|CBG36686.1| cold shock protein [Escherichia coli 042]
 gi|288887797|gb|ADC56115.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|289775652|gb|EFD83652.1| cold shock protein cspA [Klebsiella sp. 1_1_55]
 gi|290764806|gb|ADD58767.1| Cold shock protein cspA [Escherichia coli O55:H7 str. CB9615]
 gi|291068112|gb|EFE06221.1| putative cold shock protein [Citrobacter youngae ATCC 29220]
 gi|291321992|gb|EFE61423.1| cold shock protein cspA [Escherichia coli B088]
 gi|291425990|gb|EFE99024.1| cold shock protein CspB [Escherichia coli FVEC1412]
 gi|291431581|gb|EFF04566.1| cold shock protein cspA [Escherichia coli B185]
 gi|291468638|gb|EFF11131.1| cold shock protein cspA [Escherichia coli B354]
 gi|294490956|gb|ADE89712.1| cold shock DNA-binding protein [Escherichia coli IHE3034]
 gi|298276764|gb|EFI18282.1| cold shock protein CspB [Escherichia coli FVEC1302]
 gi|299878753|gb|EFI86964.1| transcriptional repressor activity CueR [Escherichia coli MS
          196-1]
 gi|300300977|gb|EFJ57362.1| transcriptional repressor activity CueR [Escherichia coli MS
          185-1]
 gi|300308426|gb|EFJ62946.1| transcriptional repressor activity CueR [Escherichia coli MS
          200-1]
 gi|300318019|gb|EFJ67803.1| transcriptional repressor activity CueR [Escherichia coli MS
          175-1]
 gi|300357611|gb|EFJ73481.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300395621|gb|EFJ79159.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|300405208|gb|EFJ88746.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300411306|gb|EFJ94844.1| transcriptional repressor activity CueR [Escherichia coli MS
          45-1]
 gi|300412570|gb|EFJ95880.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300418272|gb|EFK01583.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|300449807|gb|EFK13427.1| transcriptional repressor activity CueR [Escherichia coli MS
          116-1]
 gi|300457748|gb|EFK21241.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|300463773|gb|EFK27266.1| transcriptional repressor activity CueR [Escherichia coli MS
          187-1]
 gi|300525404|gb|EFK46473.1| transcriptional repressor activity CueR [Escherichia coli MS
          119-7]
 gi|300532109|gb|EFK53171.1| transcriptional repressor activity CueR [Escherichia coli MS
          107-1]
 gi|300840087|gb|EFK67847.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|301075763|gb|EFK90569.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|305850486|gb|EFM50943.1| major cold shock protein [Escherichia coli NC101]
 gi|306906024|gb|EFN36544.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|307555662|gb|ADN48437.1| cold shock protein CspA [Escherichia coli ABU 83972]
 gi|307628638|gb|ADN72942.1| major cold shock protein [Escherichia coli UM146]
 gi|308120259|gb|EFO57521.1| transcriptional repressor activity CueR [Escherichia coli MS
          145-7]
 gi|308924509|gb|EFP70005.1| cold shock-like protein cspG [Shigella dysenteriae 1617]
 gi|310334546|gb|EFQ00751.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|312287360|gb|EFR15269.1| cold shock-like protein cspG [Escherichia coli 2362-75]
 gi|312914675|dbj|BAJ38649.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. T000240]
 gi|312948122|gb|ADR28949.1| major cold shock protein [Escherichia coli O83:H1 str. NRG 857C]
 gi|313647586|gb|EFS12036.1| cold shock-like protein cspG [Shigella flexneri 2a str. 2457T]
 gi|315062841|gb|ADT77168.1| major cold shock protein [Escherichia coli W]
 gi|315138132|dbj|BAJ45291.1| cold shock protein cspA [Escherichia coli DH1]
 gi|315254086|gb|EFU34054.1| transcriptional repressor activity CueR [Escherichia coli MS
          85-1]
 gi|315285298|gb|EFU44743.1| transcriptional repressor activity CueR [Escherichia coli MS
          110-3]
 gi|315294135|gb|EFU53487.1| transcriptional repressor activity CueR [Escherichia coli MS
          153-1]
 gi|315300090|gb|EFU59328.1| transcriptional repressor activity CueR [Escherichia coli MS
          16-3]
 gi|315618408|gb|EFU98995.1| cold shock-like protein cspG [Escherichia coli 3431]
 gi|320088070|emb|CBY97832.1| Cold shock-like protein cspG CPS-G [Salmonella enterica subsp.
          enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|320177195|gb|EFW52205.1| Cold shock protein CspA [Shigella dysenteriae CDC 74-1112]
 gi|320182073|gb|EFW56978.1| Cold shock protein CspA [Shigella boydii ATCC 9905]
 gi|320187079|gb|EFW61787.1| Cold shock protein CspA [Shigella flexneri CDC 796-83]
 gi|320191387|gb|EFW66037.1| Cold shock protein CspA [Escherichia coli O157:H7 str. EC1212]
 gi|320193931|gb|EFW68564.1| Cold shock protein CspA [Escherichia coli WV_060327]
 gi|320201422|gb|EFW76003.1| Cold shock protein CspA [Escherichia coli EC4100B]
 gi|320639877|gb|EFX09471.1| RNA chaperone/anti-terminator [Escherichia coli O157:H7 str.
          G5101]
 gi|320645040|gb|EFX14064.1| RNA chaperone/anti-terminator [Escherichia coli O157:H- str.
          493-89]
 gi|320650307|gb|EFX18790.1| RNA chaperone/anti-terminator [Escherichia coli O157:H- str. H
          2687]
 gi|320655882|gb|EFX23805.1| RNA chaperone/anti-terminator [Escherichia coli O55:H7 str.
          3256-97 TW 07815]
 gi|320661662|gb|EFX29077.1| RNA chaperone/anti-terminator [Escherichia coli O55:H7 str. USDA
          5905]
 gi|320666686|gb|EFX33669.1| RNA chaperone/anti-terminator [Escherichia coli O157:H7 str.
          LSU-61]
 gi|321226705|gb|EFX51755.1| Cold shock protein CspA [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322613962|gb|EFY10898.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315996572]
 gi|322620331|gb|EFY17199.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-1]
 gi|322625336|gb|EFY22163.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-3]
 gi|322629997|gb|EFY26770.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-4]
 gi|322634187|gb|EFY30922.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-1]
 gi|322635912|gb|EFY32621.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-2]
 gi|322643170|gb|EFY39744.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 531954]
 gi|322644609|gb|EFY41145.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. NC_MB110209-0054]
 gi|322650851|gb|EFY47243.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. OH_2009072675]
 gi|322652985|gb|EFY49320.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. CASC_09SCPH15965]
 gi|322659948|gb|EFY56188.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 19N]
 gi|322663281|gb|EFY59485.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 81038-01]
 gi|322668767|gb|EFY64920.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MD_MDA09249507]
 gi|322674430|gb|EFY70523.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 414877]
 gi|322678362|gb|EFY74423.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 366867]
 gi|322680868|gb|EFY76902.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 413180]
 gi|322687196|gb|EFY83169.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 446600]
 gi|322716639|gb|EFZ08210.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
 gi|323132010|gb|ADX19440.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
 gi|323153885|gb|EFZ40119.1| cold shock-like protein cspG [Escherichia coli EPECa14]
 gi|323166951|gb|EFZ52690.1| cold shock-like protein cspG [Shigella sonnei 53G]
 gi|323174215|gb|EFZ59843.1| cold shock-like protein cspG [Escherichia coli LT-68]
 gi|323182712|gb|EFZ68114.1| cold shock-like protein cspG [Escherichia coli 1357]
 gi|323189283|gb|EFZ74566.1| cold shock-like protein cspG [Escherichia coli RN587/1]
 gi|323192155|gb|EFZ77388.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609458-1]
 gi|323200659|gb|EFZ85733.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556150-1]
 gi|323201369|gb|EFZ86435.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609460]
 gi|323206769|gb|EFZ91723.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 507440-20]
 gi|323211801|gb|EFZ96633.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556152]
 gi|323216160|gb|EGA00888.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB101509-0077]
 gi|323220383|gb|EGA04837.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB102109-0047]
 gi|323226240|gb|EGA10455.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
 gi|323228360|gb|EGA12491.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB111609-0052]
 gi|323234181|gb|EGA18269.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009083312]
 gi|323237166|gb|EGA21233.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009085258]
 gi|323244685|gb|EGA28689.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315731156]
 gi|323249166|gb|EGA33084.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323250715|gb|EGA34595.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323257590|gb|EGA41277.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323262299|gb|EGA45860.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008284]
 gi|323266146|gb|EGA49637.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323268781|gb|EGA52239.1| RNA chaperone/anti-terminator [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
 gi|323376568|gb|ADX48836.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323934742|gb|EGB31129.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1520]
 gi|323939545|gb|EGB35753.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323944546|gb|EGB40617.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323949800|gb|EGB45684.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H252]
 gi|323954899|gb|EGB50679.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H263]
 gi|323959439|gb|EGB55098.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H489]
 gi|323966026|gb|EGB61467.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli M863]
 gi|323971361|gb|EGB66602.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|323975031|gb|EGB70140.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TW10509]
 gi|324007334|gb|EGB76553.1| transcriptional repressor activity CueR [Escherichia coli MS
          57-2]
 gi|324014208|gb|EGB83427.1| transcriptional repressor activity CueR [Escherichia coli MS
          60-1]
 gi|324021129|gb|EGB90348.1| transcriptional repressor activity CueR [Escherichia coli MS
          117-3]
 gi|324111895|gb|EGC05875.1| cold-shock DNA-binding domain-containing protein [Escherichia
          fergusonii B253]
 gi|324116564|gb|EGC10481.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1167]
 gi|325499116|gb|EGC96975.1| major cold shock protein [Escherichia fergusonii ECD227]
 gi|326337439|gb|EGD61274.1| Cold shock protein CspA [Escherichia coli O157:H7 str. 1044]
 gi|326339964|gb|EGD63771.1| Cold shock protein CspA [Escherichia coli O157:H7 str. 1125]
 gi|326625395|gb|EGE31740.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Dublin str. 3246]
 gi|326629882|gb|EGE36225.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
 gi|327251207|gb|EGE62900.1| cold shock-like protein cspG [Escherichia coli STEC_7v]
 gi|328538186|gb|EGF64339.1| cold shock protein [Klebsiella sp. MS 92-3]
 gi|330909619|gb|EGH38133.1| cold shock protein CspA [Escherichia coli AA86]
 gi|331036561|gb|EGI08787.1| conserved domain protein [Escherichia coli H736]
 gi|331041885|gb|EGI14029.1| conserved domain protein [Escherichia coli M605]
 gi|331047208|gb|EGI19286.1| conserved domain protein [Escherichia coli M718]
 gi|331053087|gb|EGI25120.1| conserved domain protein [Escherichia coli TA206]
 gi|331057689|gb|EGI29675.1| conserved domain protein [Escherichia coli TA143]
 gi|331062452|gb|EGI34372.1| conserved domain protein [Escherichia coli TA271]
 gi|331067955|gb|EGI39353.1| conserved domain protein [Escherichia coli TA280]
 gi|331072809|gb|EGI44134.1| conserved domain protein [Escherichia coli H591]
 gi|331077590|gb|EGI48802.1| conserved domain protein [Escherichia coli H299]
 gi|332085082|gb|EGI90262.1| cold shock-like protein cspG [Shigella boydii 5216-82]
 gi|332085822|gb|EGI90986.1| cold shock-like protein cspG [Shigella dysenteriae 155-74]
 gi|332089367|gb|EGI94471.1| cold shock-like protein cspG [Shigella boydii 3594-74]
 gi|332104476|gb|EGJ07822.1| major cold shock protein [Shigella sp. D9]
 gi|332345523|gb|AEE58857.1| cold shock-like protein CspG [Escherichia coli UMNK88]
 gi|332750008|gb|EGJ80420.1| cold shock-like protein cspG [Shigella flexneri K-671]
 gi|332750165|gb|EGJ80576.1| cold shock-like protein cspG [Shigella flexneri 4343-70]
 gi|332751185|gb|EGJ81588.1| cold shock-like protein cspG [Shigella flexneri 2747-71]
 gi|332763435|gb|EGJ93674.1| cspA transcriptional activator [Shigella flexneri 2930-71]
 gi|332990500|gb|AEF09483.1| major cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
 gi|332996874|gb|EGK16493.1| cold shock-like protein cspG [Shigella flexneri K-272]
 gi|332997304|gb|EGK16920.1| cold shock-like protein cspG [Shigella flexneri K-218]
 gi|333012564|gb|EGK31945.1| cold shock-like protein cspG [Shigella flexneri K-304]
 gi|333013441|gb|EGK32813.1| cold shock-like protein cspG [Shigella flexneri K-227]
          Length = 70

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H SA+ + G  +L EGQ V++   ++ A G
Sbjct: 6  TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 61

Query: 64 KYSAENLK 71
            +A N+ 
Sbjct: 62 P-AAGNVT 68


>gi|323934238|gb|EGB30662.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1520]
          Length = 71

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFNSDKGFGFISP---ADGSKDVFVHFSAIQSNNFRTLEEGQQVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVVAL 70


>gi|296134263|ref|YP_003641510.1| cold-shock DNA-binding domain protein [Thermincola sp. JR]
 gi|296032841|gb|ADG83609.1| cold-shock DNA-binding domain protein [Thermincola potens JR]
          Length = 65

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  E     G DVF+H SA+   G   L EGQ V ++ V+  A G 
Sbjct: 3  GKVKWFNQEKGFGFIERE----DGGDVFVHFSAIQEEGFKTLAEGQEVEFEIVEG-ARGP 57

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 58 QAANVVKL 65


>gi|293395718|ref|ZP_06640000.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291421655|gb|EFE94902.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 69

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP    +   DVF+H SA+ S G   L EGQ V +   Q+   G
Sbjct: 5  TGHVKWFNESKGFGFITP---ADGSKDVFVHFSAIVSDGFKTLAEGQQVEFSI-QDSQRG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 PAAANVVAI 69


>gi|238794631|ref|ZP_04638237.1| Cold shock-like protein cspB [Yersinia intermedia ATCC 29909]
 gi|238726020|gb|EEQ17568.1| Cold shock-like protein cspB [Yersinia intermedia ATCC 29909]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 2  TGLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ENGAKG 57

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 58 PAAANVIAL 66


>gi|108799262|ref|YP_639459.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          MCS]
 gi|119868378|ref|YP_938330.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          KMS]
 gi|126434920|ref|YP_001070611.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          JLS]
 gi|108769681|gb|ABG08403.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS]
 gi|119694467|gb|ABL91540.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS]
 gi|126234720|gb|ABN98120.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+G     DDVF+H S +   G  +L E Q V ++  Q  A
Sbjct: 1  MTQGTVKWFNSEKGFGFIAPDG---GSDDVFVHYSEIQGGGFRSLEENQRVEFEIGQG-A 56

Query: 62 NGKYSAENLKL 72
           G  +     +
Sbjct: 57 KGPQATSVTAI 67


>gi|229916626|ref|YP_002885272.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b]
 gi|229468055|gb|ACQ69827.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b]
          Length = 65

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  E     G DVF+H SA+ S G  +L EGQ V ++ V +   G 
Sbjct: 3  GKVKWFNSEKGFGFIEVE----GGKDVFVHFSAIQSEGYKSLDEGQDVEFEIV-DGERGP 57

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 58 QAANVVKL 65


>gi|42780794|ref|NP_978041.1| cold shock protein CspB [Bacillus cereus ATCC 10987]
 gi|47566079|ref|ZP_00237117.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|52143761|ref|YP_083069.1| cold shock protein [Bacillus cereus E33L]
 gi|206974820|ref|ZP_03235735.1| cold shock protein CspB [Bacillus cereus H3081.97]
 gi|217959179|ref|YP_002337727.1| cold shock protein CspB [Bacillus cereus AH187]
 gi|222095321|ref|YP_002529381.1| cold shock protein [Bacillus cereus Q1]
 gi|228984782|ref|ZP_04144954.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229090659|ref|ZP_04221892.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42]
 gi|229138395|ref|ZP_04266986.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26]
 gi|229155270|ref|ZP_04283381.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342]
 gi|229195910|ref|ZP_04322664.1| Cold shock-like protein cspB [Bacillus cereus m1293]
 gi|300117378|ref|ZP_07055168.1| cold shock protein CspB [Bacillus cereus SJ1]
 gi|42736714|gb|AAS40649.1| cold shock protein CspB [Bacillus cereus ATCC 10987]
 gi|47556996|gb|EAL15326.1| cold shock protein-related protein [Bacillus cereus G9241]
 gi|51977230|gb|AAU18780.1| cold shock protein [Bacillus cereus E33L]
 gi|206746839|gb|EDZ58231.1| cold shock protein CspB [Bacillus cereus H3081.97]
 gi|217064802|gb|ACJ79052.1| cold shock protein CspB [Bacillus cereus AH187]
 gi|221239379|gb|ACM12089.1| cold shock protein [Bacillus cereus Q1]
 gi|228587552|gb|EEK45616.1| Cold shock-like protein cspB [Bacillus cereus m1293]
 gi|228628195|gb|EEK84911.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342]
 gi|228645066|gb|EEL01307.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26]
 gi|228692601|gb|EEL46327.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42]
 gi|228774980|gb|EEM23374.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|298725213|gb|EFI65865.1| cold shock protein CspB [Bacillus cereus SJ1]
 gi|324325719|gb|ADY20979.1| cold shock protein CspB [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 65

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIE----IEGADDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|317047537|ref|YP_004115185.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
          At-9b]
 gi|316949154|gb|ADU68629.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
          Length = 73

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G    GDD+F H S +   G   L  GQ V +D  +   
Sbjct: 1  METGTVKWFNNAKGFGFICPIG---GGDDIFAHYSTIQMEGYRTLKAGQQVQFDVHEGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|218898929|ref|YP_002447340.1| hypothetical protein BCG9842_B1369 [Bacillus cereus G9842]
 gi|218545380|gb|ACK97774.1| conserved domain protein [Bacillus cereus G9842]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ VT++  Q   
Sbjct: 1  MEQGKVKWFNAEKGFGFIERE----GGEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--LQATNVQ 64


>gi|92112880|ref|YP_572808.1| cold-shock DNA-binding protein family protein [Chromohalobacter
          salexigens DSM 3043]
 gi|91795970|gb|ABE58109.1| cold-shock DNA-binding protein family [Chromohalobacter
          salexigens DSM 3043]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P    E GDD+F+H S + + G  +L +GQ V++D  Q   
Sbjct: 1  MATGTVKWFNDAKGFGFISP---AEGGDDLFVHFSEIQAEGFKSLQDGQEVSFDVTQGKK 57

Query: 62 NGKYSAENLK 71
               A N+K
Sbjct: 58 G--LQASNVK 65


>gi|37525256|ref|NP_928600.1| cold shock protein CspE [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36784683|emb|CAE13583.1| cold shock-like protein [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 70

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 1  MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M+ +  G++KW+N  KG+GFITPE   +   DVF+H SA+   G   L EGQ V ++   
Sbjct: 1  MMSKIKGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQITGFKTLAEGQKVEFEIT- 56

Query: 59 NDANGKYSAENLKL 72
          + A G  +   + +
Sbjct: 57 DGAKGPSAVNVVAI 70


>gi|84387543|ref|ZP_00990561.1| putative Cold shock-like protein [Vibrio splendidus 12B01]
 gi|86144453|ref|ZP_01062785.1| putative Cold shock-like protein [Vibrio sp. MED222]
 gi|84377591|gb|EAP94456.1| putative Cold shock-like protein [Vibrio splendidus 12B01]
 gi|85837352|gb|EAQ55464.1| putative Cold shock-like protein [Vibrio sp. MED222]
          Length = 70

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          + G++KW+N +KG+GFI+ +     G DVF+H  A+AS G   L EGQ V+++ V+N   
Sbjct: 5  NTGTVKWFNEEKGFGFISQD---NGGADVFVHFRAIASEGFKTLKEGQKVSFE-VENGQK 60

Query: 63 GKYSAENL 70
          G  +A  +
Sbjct: 61 GLQAANVV 68


>gi|319651116|ref|ZP_08005249.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
 gi|317397170|gb|EFV77875.1| cold shock protein [Bacillus sp. 2_A_57_CT2]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G+DVF+H SA+ + G   L EGQ V +D  Q   
Sbjct: 1  MATGKVKWFNSEKGFGFIEVE----GGEDVFVHYSAIQTEGFKTLDEGQEVNFDIEQGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--PQAVNVTKL 66


>gi|326789293|ref|YP_004307114.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
 gi|326540057|gb|ADZ81916.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
          Length = 65

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI+ E     GDDVF+H SA+   G  +L EGQ V +D  +     
Sbjct: 2  TGTVKWFNAEKGFGFISRE----DGDDVFVHFSAIQGDGFKSLDEGQRVNFDITKGARG- 56

Query: 64 KYSAENLK 71
             AEN+ 
Sbjct: 57 -AQAENVT 63


>gi|186474439|ref|YP_001863410.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184198398|gb|ACC76360.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + G+D+F H S + + G  +L E Q V++D V+   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIKTEGFKSLQENQKVSFD-VKMGP 56

Query: 62 NGKYSAENLKLV 73
           GK +A N+K V
Sbjct: 57 KGKQAA-NIKPV 67


>gi|15641155|ref|NP_230787.1| cold shock-like protein CspD [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121587431|ref|ZP_01677200.1| cold shock-like protein CspD [Vibrio cholerae 2740-80]
 gi|121726283|ref|ZP_01679573.1| cold shock-like protein CspD [Vibrio cholerae V52]
 gi|147674134|ref|YP_001216662.1| cold shock-like protein CspD [Vibrio cholerae O395]
 gi|153214227|ref|ZP_01949262.1| cold shock-like protein CspD [Vibrio cholerae 1587]
 gi|153802582|ref|ZP_01957168.1| cold shock-like protein CspD [Vibrio cholerae MZO-3]
 gi|153816958|ref|ZP_01969625.1| cold shock-like protein CspD [Vibrio cholerae NCTC 8457]
 gi|153822008|ref|ZP_01974675.1| cold shock-like protein CspD [Vibrio cholerae B33]
 gi|153826040|ref|ZP_01978707.1| cold shock-like protein CspD [Vibrio cholerae MZO-2]
 gi|153828664|ref|ZP_01981331.1| cold shock-like protein CspD [Vibrio cholerae 623-39]
 gi|227081315|ref|YP_002809866.1| cold shock-like protein CspD [Vibrio cholerae M66-2]
 gi|254291567|ref|ZP_04962357.1| cold shock-like protein CspD [Vibrio cholerae AM-19226]
 gi|254848270|ref|ZP_05237620.1| cold shock-like protein CspD [Vibrio cholerae MO10]
 gi|297578744|ref|ZP_06940672.1| predicted protein [Vibrio cholerae RC385]
 gi|298498753|ref|ZP_07008560.1| cold shock domain-containing protein CspD [Vibrio cholerae MAK
          757]
 gi|20138015|sp|Q9KSW4|CSPD_VIBCH RecName: Full=Cold shock-like protein CspD
 gi|9655615|gb|AAF94301.1| cold shock-like protein CspD [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121548351|gb|EAX58415.1| cold shock-like protein CspD [Vibrio cholerae 2740-80]
 gi|121631229|gb|EAX63602.1| cold shock-like protein CspD [Vibrio cholerae V52]
 gi|124115476|gb|EAY34296.1| cold shock-like protein CspD [Vibrio cholerae 1587]
 gi|124121896|gb|EAY40639.1| cold shock-like protein CspD [Vibrio cholerae MZO-3]
 gi|126512545|gb|EAZ75139.1| cold shock-like protein CspD [Vibrio cholerae NCTC 8457]
 gi|126520473|gb|EAZ77696.1| cold shock-like protein CspD [Vibrio cholerae B33]
 gi|146316017|gb|ABQ20556.1| cold shock-like protein CspD [Vibrio cholerae O395]
 gi|148875817|gb|EDL73952.1| cold shock-like protein CspD [Vibrio cholerae 623-39]
 gi|149740260|gb|EDM54407.1| cold shock-like protein CspD [Vibrio cholerae MZO-2]
 gi|150422519|gb|EDN14476.1| cold shock-like protein CspD [Vibrio cholerae AM-19226]
 gi|227009203|gb|ACP05415.1| cold shock-like protein CspD [Vibrio cholerae M66-2]
 gi|227013009|gb|ACP09219.1| cold shock-like protein CspD [Vibrio cholerae O395]
 gi|254843975|gb|EET22389.1| cold shock-like protein CspD [Vibrio cholerae MO10]
 gi|297536338|gb|EFH75171.1| predicted protein [Vibrio cholerae RC385]
 gi|297543086|gb|EFH79136.1| cold shock domain-containing protein CspD [Vibrio cholerae MAK
          757]
          Length = 76

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      D+F H S +   G   L  GQ V+Y   Q   
Sbjct: 4  MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMDGYRTLKAGQQVSYQVEQG-P 59

Query: 62 NGKYSAENLKLVPKSSN 78
           G +++  + +  +S+ 
Sbjct: 60 KGYHASCVVPIEGQSAK 76


>gi|310816002|ref|YP_003963966.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium
          vulgare Y25]
 gi|308754737|gb|ADO42666.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium
          vulgare Y25]
          Length = 68

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE       DVF+H S++  +G+ +L +GQ V++D  +   
Sbjct: 1  MANGTVKWFNATKGFGFIAPES---GSKDVFVHISSMQRSGISDLADGQKVSFDIEEG-R 56

Query: 62 NGKYSAENLKL 72
          +G+ +A N+ L
Sbjct: 57 DGRENAINITL 67


>gi|300779976|ref|ZP_07089832.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030]
 gi|300534086|gb|EFK55145.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+   +   DVF+H S +  +G   L E Q V ++  +   
Sbjct: 1  MATGTVKWFNAEKGFGFIAPD---DGSSDVFVHYSEIQGSGFRTLEENQQVEFEIGEGSK 57

Query: 62 NGKYSAENLKLV 73
               A+ ++ +
Sbjct: 58 G--PQAQQVRAL 67


>gi|291326366|ref|ZP_06124240.2| conserved domain protein [Providencia rettgeri DSM 1131]
 gi|291314630|gb|EFE55083.1| conserved domain protein [Providencia rettgeri DSM 1131]
          Length = 77

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +   +N A G
Sbjct: 13 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQQVEFTI-ENGAKG 68

Query: 64 KYSAENLKL 72
            +A    +
Sbjct: 69 PAAANVTAI 77


>gi|126698954|ref|YP_001087851.1| putative cold shock protein [Clostridium difficile 630]
 gi|254974900|ref|ZP_05271372.1| putative cold shock protein [Clostridium difficile QCD-66c26]
 gi|255092289|ref|ZP_05321767.1| putative cold shock protein [Clostridium difficile CIP 107932]
 gi|255100373|ref|ZP_05329350.1| putative cold shock protein [Clostridium difficile QCD-63q42]
 gi|255306315|ref|ZP_05350486.1| putative cold shock protein [Clostridium difficile ATCC 43255]
 gi|255314027|ref|ZP_05355610.1| putative cold shock protein [Clostridium difficile QCD-76w55]
 gi|255516707|ref|ZP_05384383.1| putative cold shock protein [Clostridium difficile QCD-97b34]
 gi|255649806|ref|ZP_05396708.1| putative cold shock protein [Clostridium difficile QCD-37x79]
 gi|255655364|ref|ZP_05400773.1| putative cold shock protein [Clostridium difficile QCD-23m63]
 gi|260682964|ref|YP_003214249.1| putative cold shock protein [Clostridium difficile CD196]
 gi|260686562|ref|YP_003217695.1| putative cold shock protein [Clostridium difficile R20291]
 gi|296451352|ref|ZP_06893090.1| cold shock protein CspA [Clostridium difficile NAP08]
 gi|296880298|ref|ZP_06904263.1| cold shock protein CspA [Clostridium difficile NAP07]
 gi|306519907|ref|ZP_07406254.1| putative cold shock protein [Clostridium difficile QCD-32g58]
 gi|115250391|emb|CAJ68213.1| Cold shock protein CspB [Clostridium difficile]
 gi|260209127|emb|CBA62316.1| putative cold shock protein [Clostridium difficile CD196]
 gi|260212578|emb|CBE03568.1| putative cold shock protein [Clostridium difficile R20291]
 gi|296259768|gb|EFH06625.1| cold shock protein CspA [Clostridium difficile NAP08]
 gi|296428741|gb|EFH14623.1| cold shock protein CspA [Clostridium difficile NAP07]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI+ EG      DVF+H SA+   G   L EGQ V ++ V + A
Sbjct: 1  MKTGVVKWFNNEKGFGFISVEGEG----DVFVHFSAITGDGYKTLEEGQSVEFEVV-DGA 55

Query: 62 NGKYSAENLKL 72
           G  +A  ++L
Sbjct: 56 KGPQAANVVRL 66


>gi|331702398|ref|YP_004399357.1| cold-shock DNA-binding domain-containing protein [Lactobacillus
          buchneri NRRL B-30929]
 gi|329129741|gb|AEB74294.1| cold-shock DNA-binding domain protein [Lactobacillus buchneri
          NRRL B-30929]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKGYGFIT +       DVF+H SA+   G  +L EGQ VT D V++  
Sbjct: 1  MKQGTVKWFNADKGYGFITTDDG-----DVFVHFSAINKDGFKSLDEGQKVTLD-VEDSD 54

Query: 62 NGKYSAENLKL 72
           G  +A    +
Sbjct: 55 RGPQAANVTPI 65


>gi|259418300|ref|ZP_05742218.1| conserved domain protein [Silicibacter sp. TrichCH4B]
 gi|259345695|gb|EEW57539.1| conserved domain protein [Silicibacter sp. TrichCH4B]
          Length = 68

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   E G DVF+H SAV  +GL  L + Q V Y+  +   
Sbjct: 1  MPTGTVKWFNTTKGYGFIEPD---EGGKDVFVHISAVERSGLTGLADNQKVGYELSEG-R 56

Query: 62 NGKYSAENLKLV 73
          +G+  A +++ +
Sbjct: 57 DGRQMAGDIRPL 68


>gi|209520217|ref|ZP_03268987.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|209499333|gb|EDZ99418.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     GDD+F H S ++  G   L E Q V+Y+  +   
Sbjct: 1  MDTGTVKWFNDSKGFGFITPD---NGGDDLFAHFSEISGDGFKTLAENQKVSYE-TKRGP 56

Query: 62 NGKYSAENLKLV 73
           G  +A N+K +
Sbjct: 57 KGLQAA-NIKPL 67


>gi|159576908|dbj|BAF92769.1| hypothetical protein [Photobacterium phosphoreum]
          Length = 70

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 6  TGLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 LQAANVVAL 70


>gi|33592839|ref|NP_880483.1| cold shock-like protein [Bordetella pertussis Tohama I]
 gi|33572487|emb|CAE42059.1| cold shock-like protein [Bordetella pertussis Tohama I]
 gi|332382252|gb|AEE67099.1| cold shock-like protein [Bordetella pertussis CS]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI P+   +   D+F H S + S G  +L E Q V+++  Q   
Sbjct: 1  MATGIVKWFNAEKGYGFIMPD---DGSKDLFAHYSEICSEGYKSLQENQRVSFEVGQGPK 57

Query: 62 NGKYSA 67
            +  A
Sbjct: 58 GPRGQA 63


>gi|213970046|ref|ZP_03398178.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          T1]
 gi|213925150|gb|EEB58713.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          T1]
          Length = 89

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G     +D+F H SA+   G   L  GQ V ++ +Q   
Sbjct: 1  MLNGKVKWFNNAKGYGFILEDGKPN--EDLFAHYSAIQMDGYKTLKAGQSVRFEIIQGPK 58

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 59 G--LHAVNIQ 66


>gi|205373573|ref|ZP_03226376.1| CspB [Bacillus coahuilensis m4-4]
          Length = 65

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  EG     DDVF+H SA+   G  +L EGQ V+++ V+ + 
Sbjct: 1  MLQGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKSLEEGQEVSFEIVEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|157369958|ref|YP_001477947.1| cold-shock DNA-binding domain-containing protein [Serratia
          proteamaculans 568]
 gi|238753509|ref|ZP_04614872.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473]
 gi|157321722|gb|ABV40819.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
 gi|238708462|gb|EEQ00817.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473]
          Length = 69

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y  V++   
Sbjct: 4  KTGQVKWFNESKGFGFIEQ---NDGGKDVFVHFSAIATDGFKTLAEGQRVEY-TVEDSPR 59

Query: 63 GKYSAENLKL 72
          G  +A  + L
Sbjct: 60 GPAAANVVAL 69


>gi|326439837|ref|ZP_08214571.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q   
Sbjct: 1  MAQGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELREGQRVSFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|148234211|ref|NP_001091131.1| hypothetical protein LOC100036881 [Xenopus laevis]
 gi|120538253|gb|AAI29585.1| LOC100036881 protein [Xenopus laevis]
          Length = 131

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G+ KW+N +KGYGF+TP+   +   D+F+H+S + + G  +L EG+ V +  + ++ +G
Sbjct: 5  TGTCKWFNAEKGYGFLTPD---DGSPDIFVHQSTIHADGFRSLAEGEPVEFSVITDERSG 61

Query: 64 KYSAENLK 71
          K  A ++ 
Sbjct: 62 KLKAADVT 69


>gi|293606144|ref|ZP_06688509.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
          43553]
 gi|292815599|gb|EFF74715.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
          43553]
          Length = 68

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI P+   +   D+F H S + S G  +L E Q VT++      
Sbjct: 1  MATGIVKWFNAEKGYGFIMPD---DGSKDLFAHYSEIRSEGYKSLQENQRVTFEVGTGPK 57

Query: 62 NGKYSAENLKL 72
              SA+N+K+
Sbjct: 58 G--PSAKNIKV 66


>gi|228905155|ref|ZP_04069162.1| hypothetical protein bthur0014_62460 [Bacillus thuringiensis IBL
          4222]
 gi|229077228|ref|ZP_04209922.1| hypothetical protein bcere0024_58750 [Bacillus cereus Rock4-18]
 gi|228706059|gb|EEL58354.1| hypothetical protein bcere0024_58750 [Bacillus cereus Rock4-18]
 gi|228854477|gb|EEM99128.1| hypothetical protein bthur0014_62460 [Bacillus thuringiensis IBL
          4222]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N DKG+GFI  E     G+DVF+H SA+   G  +L EGQ VT++  Q   
Sbjct: 1  MEQGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--LQATNVQ 64


>gi|205374414|ref|ZP_03227211.1| cold shock protein [Bacillus coahuilensis m4-4]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ VT+D  + + 
Sbjct: 1  MNTGKVKWFNAEKGFGFIEVE----GGDDVFVHFSAIQGEGFKTLEEGQSVTFDIEEGNR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--PQATNV 63


>gi|161505814|ref|YP_001572926.1| major cold shock protein [Salmonella enterica subsp. arizonae
          serovar 62:z4,z23:-- str. RSK2980]
 gi|160867161|gb|ABX23784.1| hypothetical protein SARI_03990 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 70

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H SA+ + G  +L EGQ V++   ++ A G
Sbjct: 6  TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 61

Query: 64 KYSAENL 70
            +A N+
Sbjct: 62 P-AAGNV 67


>gi|95929274|ref|ZP_01312018.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
 gi|95134772|gb|EAT16427.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +    +G DVF+H S +   G  +L EG+ VT++   +  
Sbjct: 1  MAEGTVKWFNDAKGFGFIEQD----NGPDVFVHFSEIQGDGFKSLAEGERVTFEIT-DGQ 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 KGPQAANVVK 65


>gi|312880812|ref|ZP_07740612.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM
          12260]
 gi|310784103|gb|EFQ24501.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM
          12260]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  KGYGFIT    T+ G DVF H SA+   G   L EG  V+ D V+  
Sbjct: 1  MATQGTVKWFNATKGYGFIT----TDEGRDVFCHFSAIKMDGYKALDEGVRVSLD-VEMG 55

Query: 61 ANGKYSAENLKL 72
            G+ +A  +KL
Sbjct: 56 PKGEQAANVVKL 67


>gi|307331134|ref|ZP_07610261.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306883214|gb|EFN14273.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 69

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  E   + G DVF+H S++  +G  +L + Q V +  VQ   
Sbjct: 1  MAQGTVKWFNAEKGYGFIAQE---DGGPDVFVHYSSIDGSGYRSLVDEQRVEFQIVQGRK 57

Query: 62 NGKYSAENLKLV 73
               AE ++++
Sbjct: 58 G--PQAEEVRIL 67


>gi|253990328|ref|YP_003041684.1| cold shock-like protein [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253781778|emb|CAQ84941.1| cold shock-like protein cspd (csp-d) [Photorhabdus asymbiotica]
          Length = 73

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P      G+D+F H S +   G   L  GQ V +   Q   
Sbjct: 1  METGTVKWFNNAKGFGFICP---ASGGEDIFAHYSTIQMDGYRTLKAGQKVHFSVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|254500655|ref|ZP_05112806.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
 gi|222436726|gb|EEE43405.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
          Length = 74

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KG+GFI P+     G D F+H SAV  AG+  + EGQ + YD  ++ 
Sbjct: 5  IMTTGTVKWFNSTKGFGFIQPD---NGGPDAFVHISAVERAGMHEIVEGQKIGYDMERDS 61

Query: 61 ANGKYSAENLK 71
           +GK SA NL+
Sbjct: 62 KSGKMSACNLQ 72


>gi|111021327|ref|YP_704299.1| cold shock protein A [Rhodococcus jostii RHA1]
 gi|226363671|ref|YP_002781453.1| cold shock protein [Rhodococcus opacus B4]
 gi|110820857|gb|ABG96141.1| cold shock protein A [Rhodococcus jostii RHA1]
 gi|226242160|dbj|BAH52508.1| cold shock protein [Rhodococcus opacus B4]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H S +  +G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGSGFRTLEENQRVEFEVGQGTK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|89097885|ref|ZP_01170772.1| cold shock protein [Bacillus sp. NRRL B-14911]
 gi|89087387|gb|EAR66501.1| cold shock protein [Bacillus sp. NRRL B-14911]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G+DVF+H SA+ S G  +L EGQ V +D  +   
Sbjct: 1  MATGKVKWFNAEKGFGFIEVE----GGEDVFVHFSAIQSEGFKSLDEGQEVEFDIEEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--PQAVNVTKL 66


>gi|311107157|ref|YP_003980010.1| cold-shock DNA-binding domain-containing protein 2 [Achromobacter
          xylosoxidans A8]
 gi|310761846|gb|ADP17295.1| cold-shock DNA-binding domain protein 2 [Achromobacter
          xylosoxidans A8]
 gi|317405217|gb|EFV85556.1| cold shock-like protein [Achromobacter xylosoxidans C54]
          Length = 68

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI P+   +   D+F H S + S G  +L E Q VT++      
Sbjct: 1  MATGIVKWFNAEKGYGFIMPD---DGSKDLFAHYSEIRSEGYKSLQENQRVTFEVGTGPK 57

Query: 62 NGKYSAENLKL 72
              SA+N+K+
Sbjct: 58 G--PSAKNIKV 66


>gi|94314090|ref|YP_587299.1| cold-shock DNA-binding domain-containing protein [Cupriavidus
           metallidurans CH34]
 gi|93357942|gb|ABF12030.1| cold-shock DNA-binding domain protein [Cupriavidus metallidurans
           CH34]
          Length = 126

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++KW+N  KG+GFITP+     GDD+F H S V   G  +L EGQ V Y       
Sbjct: 60  METGTVKWFNDSKGFGFITPDA---GGDDLFAHFSEVQGNGFKSLQEGQKVRY-VAGVGQ 115

Query: 62  NGKYS 66
            G  +
Sbjct: 116 KGPAA 120


>gi|323136343|ref|ZP_08071425.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
 gi|322398417|gb|EFY00937.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
          Length = 70

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI P+     G DVF+H SA+  AGL  L EGQ V Y+ V +  
Sbjct: 1  MQIGVVKWFNANKGFGFIQPDA---GGADVFVHISALERAGLHGLAEGQKVGYELVVDKR 57

Query: 62 NGKYSAENLKL 72
          +GK+SA+ L+L
Sbjct: 58 SGKFSADALQL 68


>gi|301058337|ref|ZP_07199370.1| cold-shock DNA-binding domain protein [delta proteobacterium
          NaphS2]
 gi|300447573|gb|EFK11305.1| cold-shock DNA-binding domain protein [delta proteobacterium
          NaphS2]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E     G DVF+H SA+ +AG  +L EG+ VT+D  Q   
Sbjct: 1  MANGTVKWFNDQKGFGFIEQE----DGPDVFVHHSAINAAGFKSLNEGERVTFDIEQGPK 56

Query: 62 NGKYSAENLKLV 73
              SA N+  V
Sbjct: 57 G--LSAANVTAV 66


>gi|255027485|ref|ZP_05299471.1| cold shock protein [Listeria monocytogenes FSL J2-003]
          Length = 65

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI     ++ G+D+F+H +A+   G  +L EGQ VT++ V+ + 
Sbjct: 1  MQNGKVKWFNNEKGYGFIE----SDGGEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGNR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--AQAANVE 64


>gi|167754667|ref|ZP_02426794.1| hypothetical protein CLORAM_00170 [Clostridium ramosum DSM 1402]
 gi|237733540|ref|ZP_04564021.1| cold shock DNA-binding protein [Mollicutes bacterium D7]
 gi|167705499|gb|EDS20078.1| hypothetical protein CLORAM_00170 [Clostridium ramosum DSM 1402]
 gi|229383373|gb|EEO33464.1| cold shock DNA-binding protein [Coprobacillus sp. D7]
          Length = 68

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFIT +   E G D+F+H SA+ + G   L EGQ+V +D  ++D 
Sbjct: 1  MSTGKVKWFNQEKGFGFITND---EDGKDIFVHFSAINAEGFKTLEEGQVVEFDINESDR 57

Query: 62 NGKYSAENLKL 72
               A+N+ +
Sbjct: 58 G--PQAQNVTV 66


>gi|13095918|ref|NP_076827.1| Csp [Lactococcus phage bIL312]
 gi|15672511|ref|NP_266685.1| cold shock protein D [Lactococcus lactis subsp. lactis Il1403]
 gi|12723413|gb|AAK04627.1|AE006287_6 cold shock protein D [Lactococcus lactis subsp. lactis Il1403]
 gi|12831129|gb|AAK08480.1|AF323673_27 Csp [Lactococcus phage bIL312]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT    +E G D+F H SA+ S G  +L EGQ V +D  +   
Sbjct: 1  MANGTVKWFNADKGFGFIT----SEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQR 56

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 57 G--LQAVNIT 64


>gi|302533879|ref|ZP_07286221.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302442774|gb|EFL14590.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   LTEGQ VT+D  Q   
Sbjct: 1  MANGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELTEGQRVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|212709693|ref|ZP_03317821.1| hypothetical protein PROVALCAL_00741 [Providencia alcalifaciens
          DSM 30120]
 gi|212687504|gb|EEB47032.1| hypothetical protein PROVALCAL_00741 [Providencia alcalifaciens
          DSM 30120]
          Length = 76

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFI P   T+ GDDVF H S +   G   L  GQ V Y       
Sbjct: 1  MNTGTVKWFNNAKGFGFICP---TDGGDDVFAHYSTIQMDGYRTLKAGQKVNYSVGAGPK 57

Query: 62 NGKYSAENLKLVPKSSN 78
               A+ +  + +S  
Sbjct: 58 G--SHADVIIPITESGE 72


>gi|312144105|ref|YP_003995551.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
 gi|311904756|gb|ADQ15197.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          MV+ G +KW++  KGYGFI  E     GDDVF+H SA+   G   L+E Q V ++ V+ D
Sbjct: 1  MVYTGKVKWFDEKKGYGFIERE----DGDDVFVHFSAIEQEGFKTLSEDQEVEFEIVEGD 56

Query: 61 ANGKYSAENLKLV 73
                AEN+ ++
Sbjct: 57 RG--PQAENVVVI 67


>gi|295114004|emb|CBL32641.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFIT     E G+D+F H SA+ S G   L EGQ VT+D  +   
Sbjct: 1  MNNGTVKWFNADKGFGFIT----GEDGNDIFAHFSAIQSDGFKTLDEGQAVTFD-TEEGP 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGLQATNIVK 65


>gi|260769345|ref|ZP_05878278.1| cold shock protein CspA [Vibrio furnissii CIP 102972]
 gi|260614683|gb|EEX39869.1| cold shock protein CspA [Vibrio furnissii CIP 102972]
 gi|315181877|gb|ADT88790.1| cold-shock DNA-binding domain protein [Vibrio furnissii NCTC
          11218]
          Length = 70

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFITP+     G D+F+H  ++AS G   L EGQ V+++  Q +   
Sbjct: 6  TGTVKWFNETKGFGFITPD---NGGADLFVHFRSIASEGFKTLAEGQKVSFNVEQGNKG- 61

Query: 64 KYSAENLKLV 73
             A N+ ++
Sbjct: 62 -PQAGNVTVI 70


>gi|238025342|ref|YP_002909574.1| Cold-shock DNA-binding domain-containing protein [Burkholderia
          glumae BGR1]
 gi|237880007|gb|ACR32339.1| Cold-shock DNA-binding domain protein [Burkholderia glumae BGR1]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFITP+   +  +DVF+H S +  +G  +L + Q V Y+ V+   
Sbjct: 1  MYTGTVKWFNDAKGFGFITPD---DGSEDVFVHFSEIQVSGFKSLQDSQRVRYE-VRTGP 56

Query: 62 NGKYSAEN 69
           GK +A+ 
Sbjct: 57 KGKQAADV 64


>gi|167584235|ref|ZP_02376623.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S +   G   L E Q V+Y+  +   
Sbjct: 1  MDTGTVKWFNETKGFGFITPD---KGGDDLFAHFSEIRGTGFKTLAENQKVSYEVKRGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--LQASNITPL 67


>gi|116618954|ref|YP_819325.1| cold-shock DNA-binding protein family protein [Leuconostoc
          mesenteroides subsp. mesenteroides ATCC 8293]
 gi|227431399|ref|ZP_03913450.1| CspA family cold shock transcriptional regulator [Leuconostoc
          mesenteroides subsp. cremoris ATCC 19254]
 gi|48727558|gb|AAT46080.1| cold shock protein [Leuconostoc mesenteroides]
 gi|116097801|gb|ABJ62952.1| cold-shock DNA-binding protein family [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
 gi|227352862|gb|EEJ43037.1| CspA family cold shock transcriptional regulator [Leuconostoc
          mesenteroides subsp. cremoris ATCC 19254]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFIT E    SG+DVF H SA+   G   L EGQ VT+D   +D 
Sbjct: 1  MEKGTVKWFNGEKGYGFITRE----SGEDVFAHFSAIQGDGFKTLDEGQAVTFDVETSDR 56

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 57 G--LQATNIT 64


>gi|39934248|ref|NP_946524.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris CGA009]
 gi|39648096|emb|CAE26616.1| cold shock DNA binding protein [Rhodopseudomonas palustris
          CGA009]
          Length = 86

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +LTEGQ ++++   + 
Sbjct: 16 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 72

Query: 61 ANGKYSAENLKLVP 74
                A NL + P
Sbjct: 73 KGKGPKAVNLVISP 86


>gi|296111480|ref|YP_003621862.1| cold-shock domain family protein [Leuconostoc kimchii IMSNU
          11154]
 gi|295833012|gb|ADG40893.1| cold-shock domain family protein [Leuconostoc kimchii IMSNU
          11154]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGF+T E    +G+DVF H SA+   G   L EGQ V ++   +D 
Sbjct: 1  MEKGTVKWFNGEKGYGFVTRE----NGEDVFAHFSAIQGDGFKTLEEGQAVEFEVETSD- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGLQAANITKL 66


>gi|226304760|ref|YP_002764718.1| cold shock protein [Rhodococcus erythropolis PR4]
 gi|229492328|ref|ZP_04386135.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|226183875|dbj|BAH31979.1| probable cold shock protein [Rhodococcus erythropolis PR4]
 gi|229320737|gb|EEN86551.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +GS+KW+N +KG+GFI  EG    G DVF+H S +  +G  +L EGQ V ++  Q   
Sbjct: 1  MAQGSVKWFNGEKGFGFIEQEG---GGPDVFVHYSEIQGSGYKSLDEGQKVEFEIGQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+N++ +
Sbjct: 58 G--PQAQNVRAI 67


>gi|110634483|ref|YP_674691.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
          BNC1]
 gi|110285467|gb|ABG63526.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
          Length = 70

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N  KG+GFITP+       DVF+H SAV ++G+ +L +GQ V++D   + 
Sbjct: 1  MAQTGTVKFFNATKGFGFITPDNGQ---KDVFVHISAVEASGMRSLVDGQKVSFDVEPDR 57

Query: 61 ANGKYSAENLK 71
                A NL 
Sbjct: 58 MGKGPKAVNLS 68


>gi|320353121|ref|YP_004194460.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
          DSM 2032]
 gi|320121623|gb|ADW17169.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
          DSM 2032]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +     G DVF+H SA+ + G  +L EG+ V+++ V + A
Sbjct: 1  MAEGTVKWFNDSKGFGFIAQD----GGKDVFVHHSAIQADGFKSLQEGERVSFNVV-DGA 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 KGPAAANVIK 65


>gi|300715528|ref|YP_003740331.1| Cold shock protein [Erwinia billingiae Eb661]
 gi|299061364|emb|CAX58473.1| Cold shock protein [Erwinia billingiae Eb661]
          Length = 70

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFI+P   T+   DVF+H SA+ + G   L EGQ V +   +N   G
Sbjct: 6  TGLVKWFNAEKGFGFISP---TDGSKDVFVHFSAIQNGGFKTLEEGQKVEFSI-ENGQKG 61

Query: 64 KYSAENLKL 72
            +A    L
Sbjct: 62 PAAANVTAL 70


>gi|291616468|ref|YP_003519210.1| CspB [Pantoea ananatis LMG 20103]
 gi|291151498|gb|ADD76082.1| CspB [Pantoea ananatis LMG 20103]
 gi|327392905|dbj|BAK10327.1| cold shock-like protein CspB [Pantoea ananatis AJ13355]
          Length = 70

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW+N +KG+GFI+P    +   DVF+H SA+      +L EGQ V +  V+N A G
Sbjct: 6  RGTVKWFNAEKGFGFISP---QDGSKDVFVHFSAIQGTDFRSLDEGQQVEF-TVENGAKG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVVGL 70


>gi|259418670|ref|ZP_05742587.1| conserved domain protein [Silicibacter sp. TrichCH4B]
 gi|259344892|gb|EEW56746.1| conserved domain protein [Silicibacter sp. TrichCH4B]
          Length = 68

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI  EG +    DVF+H SAV  +GL  L +GQ VT++  Q+  
Sbjct: 1  MANGTVKWFNSTKGYGFIAVEGRSN---DVFVHISAVERSGLTGLADGQAVTFEI-QSGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA +L+L
Sbjct: 57 DGRESASDLQL 67


>gi|242239695|ref|YP_002987876.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
 gi|242131752|gb|ACS86054.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
          Length = 73

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   + G+D+F H S +   G   L  GQ+V +   Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPE---DGGEDIFAHYSTIQMDGYRTLKAGQIVKFTVHQG-P 56

Query: 62 NGKYSAENLKLVPKS 76
           G +++  + +V ++
Sbjct: 57 KGNHASLIVPVVGET 71


>gi|111021610|ref|YP_704582.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|226364145|ref|YP_002781927.1| cold shock protein [Rhodococcus opacus B4]
 gi|110821140|gb|ABG96424.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|226242634|dbj|BAH52982.1| cold shock protein [Rhodococcus opacus B4]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI P+   +   DVF+H S ++ +G  +L E Q V ++  Q   
Sbjct: 1  MAQGVVKWFNSEKGFGFIAPD---DGSADVFVHYSEISGSGYKSLEENQRVEFEVGQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+N++ V
Sbjct: 58 G--PQAQNVRAV 67


>gi|90409640|ref|ZP_01217657.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90410063|ref|ZP_01218080.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90413803|ref|ZP_01221790.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90325114|gb|EAS41617.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90328993|gb|EAS45250.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|90329416|gb|EAS45673.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
          Length = 69

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 5  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 LQAANVVAL 69


>gi|307824911|ref|ZP_07655133.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307733958|gb|EFO04813.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    + G+DVF+H S +   G   LTEG  VT+D  ++  
Sbjct: 1  MATGTVKWFNNTKGFGFIAP---ADGGEDVFVHHSVIQGEGFKTLTEGDTVTFDI-ESGP 56

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 57 KGLTAANV 64


>gi|260768242|ref|ZP_05877176.1| cold shock protein [Vibrio furnissii CIP 102972]
 gi|260616272|gb|EEX41457.1| cold shock protein [Vibrio furnissii CIP 102972]
 gi|315179943|gb|ADT86857.1| Cold shock protein [Vibrio furnissii NCTC 11218]
          Length = 70

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFIT +     G+DVF+H +++ S G   L EGQ V++D  Q    G
Sbjct: 6  TGSVKWFNETKGFGFITQD---NGGNDVFVHFASIVSEGFKTLAEGQRVSFDVEQG-KKG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PQAANVVAL 70


>gi|222153624|ref|YP_002562801.1| cold shock protein CspC [Streptococcus uberis 0140J]
 gi|222114437|emb|CAR43247.1| cold shock protein CspC [Streptococcus uberis 0140J]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFIT E    +G DVF H S + S G  +L EGQ V++D  Q   
Sbjct: 1  MTNGTVKWFNAEKGFGFITQE----NGTDVFAHFSEIQSNGFKSLDEGQKVSFDLEQGQR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--LQATNI 63


>gi|326489997|dbj|BAJ94072.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 85

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP+   +   DVF+H SA++ AG   L EGQ V + Y+Q+   G
Sbjct: 7  TGVVKWFNESKGFGFITPD---DGSKDVFVHFSAISGAGFKTLAEGQRVEF-YIQDGQKG 62

Query: 64 KYSAENLKL 72
            + + + L
Sbjct: 63 PSAVDVMAL 71


>gi|157831974|pdb|1MJC|A Chain A, Crystal Structure Of Cspa, The Major Cold Shock Protein
          Of Escherichia Coli
          Length = 69

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H SA+ + G  +L EGQ V++   ++ A G
Sbjct: 5  TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 60

Query: 64 KYSAENLK 71
            +A N+ 
Sbjct: 61 P-AAGNVT 67


>gi|310825508|ref|YP_003957866.1| cold-shock DNA-binding domain-containing protein [Stigmatella
          aurantiaca DW4/3-1]
 gi|309398580|gb|ADO76039.1| Cold-shock DNA-binding domain protein [Stigmatella aurantiaca
          DW4/3-1]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +G    G+DVF H +A+ + G  +LTEGQ V ++  +   
Sbjct: 1  MATGVVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQADGFRSLTEGQRVEFEVSRGPK 57

Query: 62 NGKYSAENLKLV 73
               A+N+K +
Sbjct: 58 G--LQAQNVKPI 67


>gi|157963078|ref|YP_001503112.1| cold-shock DNA-binding domain-containing protein [Shewanella
          pealeana ATCC 700345]
 gi|167625248|ref|YP_001675542.1| cold-shock DNA-binding domain-containing protein [Shewanella
          halifaxensis HAW-EB4]
 gi|157848078|gb|ABV88577.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
          700345]
 gi|167355270|gb|ABZ77883.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis
          HAW-EB4]
          Length = 69

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+ S G   L EGQ V+++  Q    G
Sbjct: 5  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAITSDGFKTLAEGQKVSFEVEQGQ-KG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 LQAANVIAL 69


>gi|134301076|ref|YP_001114572.1| cold-shock DNA-binding domain-containing protein
          [Desulfotomaculum reducens MI-1]
 gi|134053776|gb|ABO51747.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens
          MI-1]
          Length = 65

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFI  E     G DVF H SA+   G   L EGQ V +D V+ +   
Sbjct: 2  QGTVKWFNAEKGFGFIEVE----GGKDVFAHFSAITGDGYKTLEEGQRVEFDVVEGNRG- 56

Query: 64 KYSAENL 70
             AEN+
Sbjct: 57 -PQAENI 62


>gi|331091468|ref|ZP_08340306.1| cold shock protein cspA [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330404024|gb|EGG83574.1| cold shock protein cspA [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGFI+     E+G+DVF+H + +   G  +L EGQ V ++  +  A
Sbjct: 1  MNKGTVKWFNNQKGYGFIS----DEAGNDVFVHYTGLNMEGFKSLEEGQAVEFEITEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 KGPQAVNVVKL 66


>gi|328880509|emb|CCA53748.1| cold shock protein [Streptomyces venezuelae ATCC 10712]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF H S +A++G   L EGQ VT+D  Q   
Sbjct: 1  MANGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|317506528|ref|ZP_07964325.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
 gi|316255167|gb|EFV14440.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
          Length = 68

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KG+GFITP+   + G D+F+H SA+  + G   L E Q V ++ VQ  
Sbjct: 1  MPQGTVKWFNEEKGFGFITPD---DGGKDLFVHFSAITGSTGFRTLQENQRVQFE-VQAS 56

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 57 DRGPQAASV 65


>gi|308177559|ref|YP_003916965.1| cold shock protein [Arthrobacter arilaitensis Re117]
 gi|307745022|emb|CBT75994.1| cold shock protein [Arthrobacter arilaitensis Re117]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P   ++   DVF H SA+ S G  +L EGQ V Y   +   
Sbjct: 1  MATGTVKWFNAEKGFGFIAP---SDGSADVFAHYSAIQSFGFRSLEEGQTVEYTL-EAGP 56

Query: 62 NGKYSAENLK 71
           G   A N++
Sbjct: 57 KGPQ-ATNIQ 65


>gi|49487482|ref|YP_044703.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|253730390|ref|ZP_04864555.1| cold-shock protein [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|257793529|ref|ZP_05642508.1| cold shock protein CspB [Staphylococcus aureus A9781]
 gi|258411165|ref|ZP_05681444.1| cold shock protein cspB [Staphylococcus aureus A9763]
 gi|258420930|ref|ZP_05683864.1| cold shock protein [Staphylococcus aureus A9719]
 gi|258438570|ref|ZP_05689793.1| cold shock protein [Staphylococcus aureus A9299]
 gi|258443974|ref|ZP_05692312.1| cold shock protein [Staphylococcus aureus A8115]
 gi|258446209|ref|ZP_05694369.1| cold shock protein [Staphylococcus aureus A6300]
 gi|258449132|ref|ZP_05697238.1| cold shock protein [Staphylococcus aureus A6224]
 gi|258454390|ref|ZP_05702358.1| cold shock protein cspB [Staphylococcus aureus A5937]
 gi|282894269|ref|ZP_06302499.1| cold shock protein cspLA [Staphylococcus aureus A8117]
 gi|282927740|ref|ZP_06335354.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A10102]
 gi|295406853|ref|ZP_06816657.1| cold shock protein [Staphylococcus aureus A8819]
 gi|297245888|ref|ZP_06929750.1| cold shock protein [Staphylococcus aureus A8796]
 gi|49245925|emb|CAG44406.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|253725870|gb|EES94599.1| cold-shock protein [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|257787501|gb|EEV25841.1| cold shock protein CspB [Staphylococcus aureus A9781]
 gi|257840050|gb|EEV64515.1| cold shock protein cspB [Staphylococcus aureus A9763]
 gi|257843120|gb|EEV67535.1| cold shock protein [Staphylococcus aureus A9719]
 gi|257848129|gb|EEV72121.1| cold shock protein [Staphylococcus aureus A9299]
 gi|257850858|gb|EEV74802.1| cold shock protein [Staphylococcus aureus A8115]
 gi|257855035|gb|EEV77978.1| cold shock protein [Staphylococcus aureus A6300]
 gi|257857565|gb|EEV80460.1| cold shock protein [Staphylococcus aureus A6224]
 gi|257863484|gb|EEV86244.1| cold shock protein cspB [Staphylococcus aureus A5937]
 gi|282590500|gb|EFB95578.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A10102]
 gi|282763314|gb|EFC03444.1| cold shock protein cspLA [Staphylococcus aureus A8117]
 gi|294968318|gb|EFG44343.1| cold shock protein [Staphylococcus aureus A8819]
 gi|297177253|gb|EFH36506.1| cold shock protein [Staphylococcus aureus A8796]
          Length = 75

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E    +G DVF+H S +AS G   L EGQ VT++  +   
Sbjct: 10 MNNGTVKWFNAEKGFGFIEQE----NGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQR 65

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 66 G--DQAVNVQTV 75


>gi|49484900|ref|YP_042124.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|87160637|ref|YP_495273.1| cold shock protein [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|88196660|ref|YP_501491.1| cold shock protein [Staphylococcus aureus subsp. aureus NCTC
          8325]
 gi|257424187|ref|ZP_05600616.1| cold shock protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257426864|ref|ZP_05603266.1| cold shock protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429500|ref|ZP_05605887.1| cold shock protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432147|ref|ZP_05608510.1| cold shock protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257435108|ref|ZP_05611159.1| cold shock protein [Staphylococcus aureus subsp. aureus M876]
 gi|258423247|ref|ZP_05686139.1| cold shock protein [Staphylococcus aureus A9635]
 gi|258451377|ref|ZP_05699408.1| cold shock protein [Staphylococcus aureus A5948]
 gi|282902622|ref|ZP_06310515.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          C160]
 gi|282907038|ref|ZP_06314886.1| cold shock protein beta-ribbon CspA family protein
          [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910016|ref|ZP_06317824.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282912264|ref|ZP_06320060.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282912904|ref|ZP_06320696.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M899]
 gi|282918059|ref|ZP_06325809.1| cold shock protein [Staphylococcus aureus subsp. aureus D139]
 gi|282920709|ref|ZP_06328428.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A9765]
 gi|282921281|ref|ZP_06328999.1| cold shock protein [Staphylococcus aureus subsp. aureus C427]
 gi|282922532|ref|ZP_06330222.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus C101]
 gi|283767781|ref|ZP_06340696.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus
          aureus subsp. aureus H19]
 gi|283959475|ref|ZP_06376916.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|293497957|ref|ZP_06665811.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus 58-424]
 gi|293511547|ref|ZP_06670241.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus M809]
 gi|293550156|ref|ZP_06672828.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M1015]
 gi|294849818|ref|ZP_06790558.1| cold shock protein [Staphylococcus aureus A9754]
 gi|49243029|emb|CAG41763.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|87126611|gb|ABD21125.1| cold shock protein [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|87204218|gb|ABD32028.1| cold shock protein, putative [Staphylococcus aureus subsp. aureus
          NCTC 8325]
 gi|257273205|gb|EEV05307.1| cold shock protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276495|gb|EEV07946.1| cold shock protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279981|gb|EEV10568.1| cold shock protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257283026|gb|EEV13158.1| cold shock protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257285704|gb|EEV15820.1| cold shock protein [Staphylococcus aureus subsp. aureus M876]
 gi|257846576|gb|EEV70598.1| cold shock protein [Staphylococcus aureus A9635]
 gi|257860907|gb|EEV83724.1| cold shock protein [Staphylococcus aureus A5948]
 gi|282314753|gb|EFB45139.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus C101]
 gi|282315696|gb|EFB46080.1| cold shock protein [Staphylococcus aureus subsp. aureus C427]
 gi|282318344|gb|EFB48704.1| cold shock protein [Staphylococcus aureus subsp. aureus D139]
 gi|282323004|gb|EFB53323.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M899]
 gi|282323960|gb|EFB54276.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WBG10049]
 gi|282326082|gb|EFB56387.1| cold shock domain-containing protein CspD [Staphylococcus aureus
          subsp. aureus WW2703/97]
 gi|282329937|gb|EFB59458.1| cold shock protein beta-ribbon CspA family protein
          [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594117|gb|EFB99105.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus A9765]
 gi|282597081|gb|EFC02040.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          C160]
 gi|283461660|gb|EFC08744.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus
          aureus subsp. aureus H19]
 gi|283789067|gb|EFC27894.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|290919203|gb|EFD96279.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          M1015]
 gi|291096888|gb|EFE27146.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus
          aureus subsp. aureus 58-424]
 gi|291465505|gb|EFF08037.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus M809]
 gi|294823366|gb|EFG39795.1| cold shock protein [Staphylococcus aureus A9754]
          Length = 75

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E    +G DVF+H S +AS G   L EGQ VT++  +   
Sbjct: 10 MNNGTVKWFNAEKGFGFIEQE----NGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQR 65

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 66 G--DQAVNVQTV 75


>gi|226943301|ref|YP_002798374.1| Cold shock domain family protein [Azotobacter vinelandii DJ]
 gi|226718228|gb|ACO77399.1| Cold shock domain family protein [Azotobacter vinelandii DJ]
          Length = 70

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ V+++ VQ   
Sbjct: 4  RQTGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIEGTGFKSLKEGQKVSFEAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++++
Sbjct: 60 G--MQADKVQIL 69


>gi|310815277|ref|YP_003963241.1| cold shock family protein [Ketogulonicigenium vulgare Y25]
 gi|308754012|gb|ADO41941.1| cold shock family protein [Ketogulonicigenium vulgare Y25]
          Length = 68

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PEG    G DVF+H SAV  AGL  L++ Q VT+D ++   
Sbjct: 1  MPNGTVKWFNTTKGYGFIAPEG---GGKDVFVHISAVEQAGLTGLSDDQKVTFDLIEG-R 56

Query: 62 NGKYSAENLK 71
          +G+  A NLK
Sbjct: 57 DGRQMAGNLK 66


>gi|317496049|ref|ZP_07954409.1| cold-shock' DNA-binding domain-containing protein [Gemella
          moribillum M424]
 gi|316913624|gb|EFV35110.1| cold-shock' DNA-binding domain-containing protein [Gemella
          moribillum M424]
          Length = 66

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG      DVF+H S++   G   L EG  V ++ V++ A
Sbjct: 1  MKQGTVKWFNEEKGFGFIAVEGE----KDVFVHFSSIQKDGFKTLKEGDKVEFE-VEDGA 55

Query: 62 NGKYSAENLKL 72
           G  +A  + L
Sbjct: 56 RGPQAANVVVL 66


>gi|295394500|ref|ZP_06804723.1| cold shock protein CspA [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972679|gb|EFG48531.1| cold shock protein CspA [Brevibacterium mcbrellneri ATCC 49030]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFIT +GS     D+F+H S +   G  +L EGQ V ++  Q D 
Sbjct: 1  MTQGTVKWFNAEKGYGFITVDGSD---QDIFVHYSEIQMDGYRSLQEGQQVEFNVGQGDK 57

Query: 62 NGKYSAENLKLV 73
               AE +  +
Sbjct: 58 G--PQAEGVTPL 67


>gi|302552862|ref|ZP_07305204.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
 gi|302470480|gb|EFL33573.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
          Length = 67

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF H S +A++G   L EGQ VT+D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|299140055|ref|ZP_07033224.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX8]
 gi|298597901|gb|EFI54070.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX8]
          Length = 94

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          ++G++KW+N  KG+GF+  +    SG DVF+H SA+   G  +L EG  V +D +Q    
Sbjct: 27 YKGTVKWFNNAKGFGFLARD----SGPDVFVHYSAIQLDGYKSLKEGDEVEFDVIQGT-K 81

Query: 63 GKYSAENLK 71
          G  + + ++
Sbjct: 82 GPQADQVVR 90


>gi|188534694|ref|YP_001908491.1| Cold shock protein [Erwinia tasmaniensis Et1/99]
 gi|259909319|ref|YP_002649675.1| Cold shock protein [Erwinia pyrifoliae Ep1/96]
 gi|188029736|emb|CAO97615.1| Cold shock protein [Erwinia tasmaniensis Et1/99]
 gi|224964941|emb|CAX56469.1| Cold shock protein [Erwinia pyrifoliae Ep1/96]
 gi|283479388|emb|CAY75304.1| Cold shock-like protein cspG (CPS-G) [Erwinia pyrifoliae DSM
          12163]
 gi|310766775|gb|ADP11725.1| Cold shock protein [Erwinia sp. Ejp617]
          Length = 70

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFI+P   T+   DVF+H SA+ + G   L EGQ V +   +N   G
Sbjct: 6  TGLVKWFNAEKGFGFISP---TDGSKDVFVHFSAIQNGGFKTLEEGQKVEFTI-ENGQKG 61

Query: 64 KYSAENLKL 72
            +A    L
Sbjct: 62 PAAANVTAL 70


>gi|218780300|ref|YP_002431618.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218761684|gb|ACL04150.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 66

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +     G DVF+H SA+ S+G  +L EG  VT+D  Q   
Sbjct: 1  MANGTVKWFNDQKGFGFIEQD----GGPDVFVHHSAINSSGFRSLNEGDRVTFDIEQGAK 56

Query: 62 NGKYSAENLKL 72
              SA+N+ +
Sbjct: 57 G--PSAKNVTV 65


>gi|108801761|ref|YP_641958.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          MCS]
 gi|118473705|ref|YP_890379.1| hypothetical protein MSMEG_6159 [Mycobacterium smegmatis str. MC2
          155]
 gi|119870912|ref|YP_940864.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          KMS]
 gi|126437748|ref|YP_001073439.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          JLS]
 gi|302595677|sp|A0R5E1|CSPA_MYCS2 RecName: Full=Probable cold shock protein A
 gi|9587215|gb|AAF89211.1|AF281675_1 cold-shock protein CspA [Mycobacterium smegmatis]
 gi|108772180|gb|ABG10902.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS]
 gi|118174992|gb|ABK75888.1| conserved domain protein [Mycobacterium smegmatis str. MC2 155]
 gi|119697001|gb|ABL94074.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS]
 gi|126237548|gb|ABO00949.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS]
          Length = 67

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H + +  +G   L E Q V ++  Q+  
Sbjct: 1  MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|225175289|ref|ZP_03729284.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
 gi|225169041|gb|EEG77840.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
          Length = 65

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI  E     G DVF+H SA+   G  +L EG+ V ++ V+    G 
Sbjct: 3  GKVKWFNQEKGYGFIERE----DGGDVFVHYSAIQQEGFKSLAEGEEVEFEIVEGT-RGP 57

Query: 65 YSAENLKL 72
           +A  +KL
Sbjct: 58 QAANVVKL 65


>gi|169349912|ref|ZP_02866850.1| hypothetical protein CLOSPI_00651 [Clostridium spiroforme DSM
          1552]
 gi|169293480|gb|EDS75613.1| hypothetical protein CLOSPI_00651 [Clostridium spiroforme DSM
          1552]
          Length = 67

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFIT +   E G D+F+H SA+ + G   L EGQ+V ++  + D 
Sbjct: 1  MSTGKVKWFNQEKGFGFITND---EDGKDIFVHFSAINAEGFKTLEEGQIVEFEINETDR 57

Query: 62 NGKYSAENLKL 72
               A+N+ +
Sbjct: 58 G--PQAQNVTV 66


>gi|77465630|ref|YP_355133.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1]
 gi|77390048|gb|ABA81232.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1]
          Length = 68

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P        DVF+H +A+  AG+  L +GQ +TYD  + D 
Sbjct: 1  MANGTVKWFNATKGFGFIAP---AHGSKDVFVHVTALERAGIRQLNDGQALTYDM-ETDR 56

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67


>gi|148546265|ref|YP_001266367.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida F1]
 gi|148510323|gb|ABQ77183.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
          Length = 69

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KGYGFITPE    SG D+F+H  A+  +G  +L EGQ VT++ VQ   
Sbjct: 4  RQNGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGSGFKSLKEGQKVTFEAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++ V
Sbjct: 60 G--MQADKVQPV 69


>gi|326692606|ref|ZP_08229611.1| cold-shock DNA-binding protein family protein [Leuconostoc
          argentinum KCTC 3773]
          Length = 66

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT E    +GDDVF H SA+ S G   L EGQ VT+D V++  
Sbjct: 1  METGTVKWFNGDKGFGFITRE----NGDDVFAHFSAIQSNGFKTLDEGQSVTFD-VESGD 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGLQATNIVK 65


>gi|309779238|ref|ZP_07674001.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
 gi|308922042|gb|EFP67676.1| cold-shock protein [Ralstonia sp. 5_7_47FAA]
          Length = 67

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+G    G D+F H S +  +G   L +GQ VT++  Q   
Sbjct: 1  MATGTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVTFEVKQGPK 57

Query: 62 NGKYSA 67
            + SA
Sbjct: 58 GLQASA 63


>gi|283787799|ref|YP_003367664.1| cold shock protein [Citrobacter rodentium ICC168]
 gi|282951253|emb|CBG90947.1| cold shock protein [Citrobacter rodentium ICC168]
          Length = 70

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H SA+ + G  +L EGQ V++   ++ A G
Sbjct: 6  TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 61

Query: 64 KYSAENL 70
            +A N+
Sbjct: 62 P-AAGNV 67


>gi|302545223|ref|ZP_07297565.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302462841|gb|EFL25934.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
          Length = 67

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI  +G    G DVF H S +A+ G   L EGQ VT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGYGFIEQDG---GGADVFAHYSNIATQGFRELQEGQKVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|120406346|ref|YP_956175.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          vanbaalenii PYR-1]
 gi|119959164|gb|ABM16169.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 67

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H + +  +G   L E Q V ++  Q+  
Sbjct: 1  MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|163941513|ref|YP_001646397.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|163863710|gb|ABY44769.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
          Length = 66

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N DKG+GFI  E     G+DVF+H SA+   G  +L EGQ VT++  Q   
Sbjct: 1  MEQGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQIDGFKSLDEGQSVTFEVEQGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQATNVQ 64


>gi|328462059|gb|EGF34235.1| putative cold shock protein [Lactobacillus helveticus MTCC 5463]
          Length = 66

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT         DVF+H SA+ + G  +L EGQ V+YD  Q   
Sbjct: 1  MQTGTVKWFNADKGFGFIT----GSDNKDVFVHFSAIKTDGFKSLEEGQKVSYDVEQGG- 55

Query: 62 NGKYSAENL 70
           G  +   +
Sbjct: 56 RGPQATNVV 64


>gi|303239877|ref|ZP_07326400.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
          CD2]
 gi|302592587|gb|EFL62312.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
          CD2]
          Length = 65

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  E     GDDVF+H SA+ S G  +L EGQ V +D  +      
Sbjct: 3  GKVKWFNAEKGFGFIERE----GGDDVFVHFSAIQSQGYKSLDEGQRVEFDLEKGQRG-- 56

Query: 65 YSAENLKL 72
            A N++L
Sbjct: 57 LQATNVRL 64


>gi|326407203|gb|ADZ64274.1| cold shock protein ,beta-ribbon, CspA family [Lactococcus lactis
          subsp. lactis CV56]
          Length = 66

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI    S+E G D+F H SA+ S G  +L EGQ V +D  +   
Sbjct: 1  MANGTVKWFNATKGFGFI----SSEDGQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQR 56

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 57 G--LQAVNIT 64


>gi|239942860|ref|ZP_04694797.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|239989320|ref|ZP_04709984.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
 gi|291446332|ref|ZP_06585722.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|291349279|gb|EFE76183.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
          Length = 67

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +AS+G   L EGQ V++D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIASSGFRELQEGQKVSFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|237786535|ref|YP_002907240.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
 gi|237759447|gb|ACR18697.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
          Length = 67

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H + +  +G   L E Q V ++  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPE---DGSQDVFVHYTEIQGSGFRTLEENQKVEFEIGEGAK 57

Query: 62 NGKYS 66
            +  
Sbjct: 58 GPQAQ 62


>gi|149911304|ref|ZP_01899925.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
 gi|149805619|gb|EDM65621.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
          Length = 67

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG++KW+N DKG+GFITP+   E G+D+F+H S + ++G   L +GQ V ++      
Sbjct: 1  MSRGTVKWFNADKGFGFITPD---EGGNDLFVHHSEIQTSGYATLEDGQKVEFEVGSGQK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--PCATNVTAI 67


>gi|238757625|ref|ZP_04618809.1| Cold shock-like protein cspE [Yersinia aldovae ATCC 35236]
 gi|238704130|gb|EEP96663.1| Cold shock-like protein cspE [Yersinia aldovae ATCC 35236]
          Length = 65

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y   Q+   G
Sbjct: 1  MGQVKWFNESKGFGFIEQ---ADGGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPRG 56

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 57 PAAANVVAL 65


>gi|188996314|ref|YP_001930565.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
          YO3AOP1]
 gi|188931381|gb|ACD66011.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp.
          YO3AOP1]
          Length = 68

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW++  KG+GFIT +   ++G D+F+H SA+  +G  NL EGQ V ++ VQ++
Sbjct: 1  MAVTGTVKWFDSKKGFGFITRD---DNGQDIFVHFSAIQGSGFKNLEEGQKVRFEIVQDE 57

Query: 61 ANGK 64
             +
Sbjct: 58 KGPR 61


>gi|126699599|ref|YP_001088496.1| cold shock protein [Clostridium difficile 630]
 gi|254975590|ref|ZP_05272062.1| cold shock protein [Clostridium difficile QCD-66c26]
 gi|255092978|ref|ZP_05322456.1| cold shock protein [Clostridium difficile CIP 107932]
 gi|255101124|ref|ZP_05330101.1| cold shock protein [Clostridium difficile QCD-63q42]
 gi|255306991|ref|ZP_05351162.1| cold shock protein [Clostridium difficile ATCC 43255]
 gi|255314719|ref|ZP_05356302.1| cold shock protein [Clostridium difficile QCD-76w55]
 gi|255517393|ref|ZP_05385069.1| cold shock protein [Clostridium difficile QCD-97b34]
 gi|255650500|ref|ZP_05397402.1| cold shock protein [Clostridium difficile QCD-37x79]
 gi|260683608|ref|YP_003214893.1| cold shock protein [Clostridium difficile CD196]
 gi|260687268|ref|YP_003218402.1| cold shock protein [Clostridium difficile R20291]
 gi|306520461|ref|ZP_07406808.1| cold shock protein [Clostridium difficile QCD-32g58]
 gi|115251036|emb|CAJ68867.1| Major cold shock protein CspC [Clostridium difficile]
 gi|260209771|emb|CBA63577.1| cold shock protein [Clostridium difficile CD196]
 gi|260213285|emb|CBE04832.1| cold shock protein [Clostridium difficile R20291]
          Length = 66

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFI+ EG     DDVF H SA+ ++G  +L EGQ V++D V+   
Sbjct: 1  MNNGIVKWFNNEKGFGFISMEGR----DDVFAHFSAIQTSGFKSLEEGQQVSFDIVKGAR 56

Query: 62 NGKYSAENLKLV 73
               AEN+ ++
Sbjct: 57 G--PQAENITIL 66


>gi|322832237|ref|YP_004212264.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|321167438|gb|ADW73137.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
          Length = 69

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI      + G DVF+H SA+A+ G   L EGQ V Y   Q+   
Sbjct: 4  KNGQVKWFNESKGFGFIEQ---ADGGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPR 59

Query: 63 GKYSAENLKL 72
          G  +A  + L
Sbjct: 60 GPAAANVIAL 69


>gi|254467917|ref|ZP_05081323.1| 'Cold-shock' DNA-binding domain, putative [beta proteobacterium
          KB13]
 gi|207086727|gb|EDZ64010.1| 'Cold-shock' DNA-binding domain, putative [beta proteobacterium
          KB13]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   +  +D+F H S++   G  +L EGQ VT++   +  
Sbjct: 1  MAEGTVKWFNDAKGFGFITPD---DGSEDLFAHFSSITGDGYKSLKEGQRVTFEVT-DGP 56

Query: 62 NGKYSAE 68
           GK ++ 
Sbjct: 57 KGKQASN 63


>gi|229823989|ref|ZP_04450058.1| hypothetical protein GCWU000282_01293 [Catonella morbi ATCC
          51271]
 gi|229786343|gb|EEP22457.1| hypothetical protein GCWU000282_01293 [Catonella morbi ATCC
          51271]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  E    +G+DVF+H SA+   G   L EGQ+V ++ V+  A
Sbjct: 1  MEQGKVKWFNSEKGFGFIERE----NGNDVFVHFSAILGEGYKTLEEGQVVNFE-VEEGA 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAANVEKL 66


>gi|222528760|ref|YP_002572642.1| cold-shock DNA-binding domain-containing protein
          [Caldicellulosiruptor bescii DSM 6725]
 gi|222455607|gb|ACM59869.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+NP+KGYGFI    S ++G+DVF+H SA+   G   L EGQ V +D V+ +   
Sbjct: 2  RGKVKWFNPEKGYGFI----SADNGEDVFVHFSAINMEGYKTLAEGQTVEFDIVKTERG- 56

Query: 64 KYSAENLKLVP 74
             A N++ V 
Sbjct: 57 -NQALNVRKVK 66


>gi|146295937|ref|YP_001179708.1| cold-shock DNA-binding domain-containing protein
          [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409513|gb|ABP66517.1| cold-shock DNA-binding protein family [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+NP+KGYGFI+    TE+GDDVF+H SA+   G   L EGQ+V +D V+++   
Sbjct: 2  RGRVKWFNPEKGYGFIS----TENGDDVFVHFSAINMEGYKTLAEGQMVEFDVVKSERG- 56

Query: 64 KYSAENLKLVP 74
             A N++ V 
Sbjct: 57 -NQAVNVRKVK 66


>gi|284009245|emb|CBA76349.1| cold shock protein [Arsenophonus nasoniae]
          Length = 70

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 7/75 (9%)

Query: 1  MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M+ +  G++KW+N  KG+GFITPE   +   DVF+H +A+ S G   L EGQ V +D  +
Sbjct: 1  MMSKVKGNVKWFNEAKGFGFITPE---DGSKDVFVHFTAIKSEGFKTLAEGQKVEFDITE 57

Query: 59 NDANGKYSAENLKLV 73
           +     SA N+  +
Sbjct: 58 GEKG--PSAINVVAI 70


>gi|223043029|ref|ZP_03613077.1| conserved domain protein [Staphylococcus capitis SK14]
 gi|314933099|ref|ZP_07840464.1| conserved domain protein [Staphylococcus caprae C87]
 gi|222443883|gb|EEE49980.1| conserved domain protein [Staphylococcus capitis SK14]
 gi|313653249|gb|EFS17006.1| conserved domain protein [Staphylococcus caprae C87]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E    +G DVF+H SA+   G  +L EGQ V +D V+ + 
Sbjct: 1  MNNGTVKWFNSEKGFGFIERE----NGGDVFVHFSAIVEDGYKSLEEGQNVEFDIVEGE- 55

Query: 62 NGKYSAENLKL 72
           G+ +A  +K+
Sbjct: 56 RGEQAANVVKM 66


>gi|317491427|ref|ZP_07949863.1| cold shock domain-containing protein CspD [Enterobacteriaceae
          bacterium 9_2_54FAA]
 gi|316920974|gb|EFV42297.1| cold shock domain-containing protein CspD [Enterobacteriaceae
          bacterium 9_2_54FAA]
          Length = 73

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    + G+D+F H S++   G   L  GQ V ++ VQ   
Sbjct: 1  METGTVKWFNNAKGFGFICP---LKGGEDIFAHYSSIQMEGYRTLKAGQQVQFN-VQEGP 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G ++     +VP  S 
Sbjct: 57 KGNHA---NTIVPIESE 70


>gi|296532321|ref|ZP_06895059.1| CspA family cold shock transcriptional regulator [Roseomonas
          cervicalis ATCC 49957]
 gi|296267345|gb|EFH13232.1| CspA family cold shock transcriptional regulator [Roseomonas
          cervicalis ATCC 49957]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P    + G DVF+H +AV  AGL  L E Q ++YD V    
Sbjct: 1  MAIGTVKWFNATKGFGFIVP---QDGGKDVFVHITAVQKAGLQGLNENQKISYDVVME-- 55

Query: 62 NGKYSAENLKLV 73
           GK +A NLK +
Sbjct: 56 RGKAAATNLKPL 67


>gi|326789721|ref|YP_004307542.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
 gi|326540485|gb|ADZ82344.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
          Length = 65

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFI  E     GDDVF+H +A+   G   L EGQ V +D V+ +  G
Sbjct: 2  TGKVKWFNAEKGFGFIERE----GGDDVFVHFTAIQGDGFKTLEEGQEVNFDIVEGN-RG 56

Query: 64 KYSAENLK 71
            +A   K
Sbjct: 57 PQAANVTK 64


>gi|255263028|ref|ZP_05342370.1| conserved domain protein [Thalassiobium sp. R2A62]
 gi|255105363|gb|EET48037.1| conserved domain protein [Thalassiobium sp. R2A62]
          Length = 68

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G+DVF+H SAV  +G+  L + Q V ++  +   
Sbjct: 1  MASGTVKWFNTTKGFGFIAPD---DGGNDVFVHISAVERSGMTGLADDQKVEFELEEG-R 56

Query: 62 NGKYSAENLKLV 73
          +G+  A NLK V
Sbjct: 57 DGRQMAGNLKAV 68


>gi|238758373|ref|ZP_04619551.1| Cold shock-like protein cspB [Yersinia aldovae ATCC 35236]
 gi|238703496|gb|EEP96035.1| Cold shock-like protein cspB [Yersinia aldovae ATCC 35236]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP    +   DVF+H SA+ S     L EGQ V +   ++ A G
Sbjct: 2  TGLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ESGAKG 57

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 58 PAAANVVVL 66


>gi|254248343|ref|ZP_04941663.1| Cold shock protein [Burkholderia cenocepacia PC184]
 gi|124874844|gb|EAY64834.1| Cold shock protein [Burkholderia cenocepacia PC184]
          Length = 83

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+N  KG+GFI+P+     GDD+F H S +   G   L EGQ V+++  +   
Sbjct: 17 VDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSFEVKRGPK 73

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 74 G--LQASNIT 81


>gi|117929224|ref|YP_873775.1| cold-shock DNA-binding protein family protein [Acidothermus
          cellulolyticus 11B]
 gi|117649687|gb|ABK53789.1| cold-shock DNA-binding protein family [Acidothermus
          cellulolyticus 11B]
          Length = 65

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  +     G DVF+H SA+   G   L E Q V ++  Q     
Sbjct: 2  QGVVKWFNAEKGFGFIAVD----GGSDVFVHYSAIQGEGYRTLAENQRVDFEITQGQKG- 56

Query: 64 KYSAENLKLV 73
             A N++ +
Sbjct: 57 -PQAANVRPI 65


>gi|126698469|ref|YP_001087366.1| cold shock protein [Clostridium difficile 630]
 gi|254974514|ref|ZP_05270986.1| cold shock protein [Clostridium difficile QCD-66c26]
 gi|255091905|ref|ZP_05321383.1| cold shock protein [Clostridium difficile CIP 107932]
 gi|255100004|ref|ZP_05328981.1| cold shock protein [Clostridium difficile QCD-63q42]
 gi|255305891|ref|ZP_05350063.1| cold shock protein [Clostridium difficile ATCC 43255]
 gi|255313639|ref|ZP_05355222.1| cold shock protein [Clostridium difficile QCD-76w55]
 gi|255516323|ref|ZP_05383999.1| cold shock protein [Clostridium difficile QCD-97b34]
 gi|255649422|ref|ZP_05396324.1| cold shock protein [Clostridium difficile QCD-37x79]
 gi|255654944|ref|ZP_05400353.1| cold shock protein [Clostridium difficile QCD-23m63]
 gi|260682590|ref|YP_003213875.1| cold shock protein [Clostridium difficile CD196]
 gi|260686190|ref|YP_003217323.1| cold shock protein [Clostridium difficile R20291]
 gi|296449689|ref|ZP_06891459.1| cold shock protein CspA [Clostridium difficile NAP08]
 gi|296877994|ref|ZP_06902013.1| cold shock protein CspA [Clostridium difficile NAP07]
 gi|306519503|ref|ZP_07405850.1| cold shock protein [Clostridium difficile QCD-32g58]
 gi|115249906|emb|CAJ67725.1| Cold shock protein [Clostridium difficile]
 gi|260208753|emb|CBA61608.1| cold shock protein [Clostridium difficile CD196]
 gi|260212206|emb|CBE02896.1| cold shock protein [Clostridium difficile R20291]
 gi|296261413|gb|EFH08238.1| cold shock protein CspA [Clostridium difficile NAP08]
 gi|296431062|gb|EFH16890.1| cold shock protein CspA [Clostridium difficile NAP07]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI+ EG     DDVF+H SA+ + G   L EG+ V++D  Q + 
Sbjct: 1  MKNGIVKWFNNEKGFGFISVEGE----DDVFVHFSAIQNDGYKTLEEGEKVSFDITQGNR 56

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 57 G--PQAENVNRI 66


>gi|146280285|ref|YP_001170441.1| hypothetical protein Rsph17025_4290 [Rhodobacter sphaeroides ATCC
          17025]
 gi|145558526|gb|ABP73136.1| hypothetical protein Rsph17025_4290 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 68

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P        DVF+H +A+  AG+  L +GQ VTYD  + D 
Sbjct: 1  MANGTVKWFNATKGFGFIAP---AHGSKDVFVHVTALERAGIHQLNDGQAVTYDM-ETDR 56

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67


>gi|38232941|ref|NP_938708.1| cold-shock protein [Corynebacterium diphtheriae NCTC 13129]
 gi|38199199|emb|CAE48825.1| cold-shock protein [Corynebacterium diphtheriae]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H S +   G   L E Q V ++  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQKVEFEVGEGAK 57

Query: 62 NGKYSAENLKLV 73
               A+ ++ +
Sbjct: 58 G--PQAQQVRAI 67


>gi|290473777|ref|YP_003466651.1| Qin prophage; cold shock protein [Xenorhabdus bovienii SS-2004]
 gi|289173084|emb|CBJ79857.1| Qin prophage; cold shock protein [Xenorhabdus bovienii SS-2004]
          Length = 71

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V++  V++ A G
Sbjct: 6  TGTVKWFNSDKGFGFISP---KDGSKDVFVHFSAIQSNDYKTLDEGQEVSFS-VESGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSATNVIAL 70


>gi|262274512|ref|ZP_06052323.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
 gi|262221075|gb|EEY72389.1| cold shock protein CspD [Grimontia hollisae CIP 101886]
          Length = 73

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   E   D+F H S +   G   L  GQ V Y+ VQ   
Sbjct: 1  MATGTVKWFNNAKGFGFICPD---EGEGDIFAHYSTIQMDGYRTLKAGQTVNYE-VQEGP 56

Query: 62 NGKYSAENLKL 72
           G ++++ + +
Sbjct: 57 KGYHASQIVPV 67


>gi|239926846|ref|ZP_04683799.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291435186|ref|ZP_06574576.1| cold shock protein scoF [Streptomyces ghanaensis ATCC 14672]
 gi|291338081|gb|EFE65037.1| cold shock protein scoF [Streptomyces ghanaensis ATCC 14672]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S + ++G   L EGQ VT+D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSNINASGFRELQEGQAVTFDVTQGQK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENIT 65


>gi|330467479|ref|YP_004405222.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
 gi|328810450|gb|AEB44622.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFI+ +   + G DVF H SA++++G  +L E Q V ++  Q   
Sbjct: 1  MATGTVKWFNGDKGFGFISQD---DGGADVFAHFSAISASGFRSLDENQRVQFEITQGPK 57

Query: 62 NGKYS 66
            + S
Sbjct: 58 GPQAS 62


>gi|319653577|ref|ZP_08007676.1| cold-shock domain family protein [Bacillus sp. 2_A_57_CT2]
 gi|317394776|gb|EFV75515.1| cold-shock domain family protein [Bacillus sp. 2_A_57_CT2]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ VT+D  Q   
Sbjct: 1  MENGKVKWFNSEKGFGFIERE----GGEDVFVHFSAIQGEGYKSLEEGQEVTFDVEQGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--AQAANVR 64


>gi|206602877|gb|EDZ39358.1| cold shock protein [Leptospirillum sp. Group II '5-way CG']
          Length = 68

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KGYGFI+ E    +G+D+F+H SA+  +G   L EGQLV ++  Q+ A
Sbjct: 1  MARGHVKWFNANKGYGFISQE----NGEDIFVHYSAIGGSGFKTLEEGQLVEFEI-QSGA 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 KGPQAANVQKV 66


>gi|3891780|pdb|3MEF|A Chain A, Major Cold-Shock Protein From Escherichia Coli Solution
          Nmr Structure
          Length = 69

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H SA+ + G  +L EGQ V++   ++ A G
Sbjct: 5  TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 60

Query: 64 KYSAENLKL 72
            +     L
Sbjct: 61 PAAGNVTSL 69


>gi|325571663|ref|ZP_08147113.1| cold-shock domain family protein [Enterococcus casseliflavus ATCC
          12755]
 gi|325155708|gb|EGC67905.1| cold-shock domain family protein [Enterococcus casseliflavus ATCC
          12755]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N DKG+GFIT     E G DVF H SA+ + G  +L EGQ VT+D  +   
Sbjct: 1  MNKGTVKWFNSDKGFGFIT----GEDGQDVFAHFSAIQADGFKSLDEGQAVTFD-TEEGQ 55

Query: 62 NGKYSAE 68
           G  +A 
Sbjct: 56 RGLQAAN 62


>gi|283796457|ref|ZP_06345610.1| cold shock protein [Clostridium sp. M62/1]
 gi|291075865|gb|EFE13229.1| cold shock protein [Clostridium sp. M62/1]
 gi|295091398|emb|CBK77505.1| cold-shock DNA-binding protein family [Clostridium cf.
          saccharolyticum K10]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H+G++KW+N  KGYGFI      E G+DVF+H S +   G  +L EG  V ++ V N A
Sbjct: 1  MHKGTVKWFNNQKGYGFIC----DEEGNDVFVHYSGLNMEGFKSLDEGAQVEFEVV-NGA 55

Query: 62 NGKYSAENLKL 72
           G  +    KL
Sbjct: 56 KGPQATNVTKL 66


>gi|254429153|ref|ZP_05042860.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
 gi|196195322|gb|EDX90281.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
          Length = 84

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGF+ P+   E G+D+F+H S +   G  +L  GQ V Y+     A
Sbjct: 1  MATGRVKWFNNAKGYGFVRPD---EGGEDLFVHYSYIQMDGYKSLKAGQPVEYEV--QPA 55

Query: 62 NGKYSAENLKLVPKSSN 78
          N  + A NL+   ++SN
Sbjct: 56 NKGFHAINLRANEEASN 72


>gi|187921398|ref|YP_001890430.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phytofirmans PsJN]
 gi|187719836|gb|ACD21059.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S ++  G   L E Q V+++  Q   
Sbjct: 1  MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGDGFKTLAENQKVSFETKQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 58 G--LQAANIKPL 67


>gi|108759696|ref|YP_631543.1| CspA family cold-shock protein [Myxococcus xanthus DK 1622]
 gi|108463576|gb|ABF88761.1| cold-shock protein, CspA family [Myxococcus xanthus DK 1622]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +G    G+D+F H +A+ + G   L EGQ V +D  +   
Sbjct: 1  MATGTVKWFNDAKGFGFIMQDG---GGEDLFCHHTAIQTQGFRTLQEGQKVEFDVARGPK 57

Query: 62 NGKYSAENLKLV 73
               A+N++ V
Sbjct: 58 G--LQAQNVRPV 67


>gi|257078464|ref|ZP_05572825.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|257091195|ref|ZP_05585556.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|294779596|ref|ZP_06744987.1| major cold shock protein CspA [Enterococcus faecalis PC1.1]
 gi|307269865|ref|ZP_07551192.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|312902662|ref|ZP_07761867.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|256986494|gb|EEU73796.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|257000007|gb|EEU86527.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|294453253|gb|EFG21664.1| major cold shock protein CspA [Enterococcus faecalis PC1.1]
 gi|306513772|gb|EFM82377.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|310634000|gb|EFQ17283.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|315162264|gb|EFU06281.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
 gi|315579305|gb|EFU91496.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+ + G   L EGQ VT+D  +   
Sbjct: 1  MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQTDGFKTLDEGQTVTFDTEEGPR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--PQATNI 63


>gi|225568420|ref|ZP_03777445.1| hypothetical protein CLOHYLEM_04497 [Clostridium hylemonae DSM
          15053]
 gi|225162648|gb|EEG75267.1| hypothetical protein CLOHYLEM_04497 [Clostridium hylemonae DSM
          15053]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++RG++KW+N  KGYGFI+     E+G+DVF+H S +   G  +L EGQ V ++  +   
Sbjct: 1  MNRGTVKWFNNQKGYGFIS----DETGNDVFVHYSGLNMDGFKSLEEGQEVEFEVTEGSK 56

Query: 62 NGKYSAENLKLV 73
               A N+  V
Sbjct: 57 G--PQAVNVTRV 66


>gi|149182147|ref|ZP_01860630.1| CspB [Bacillus sp. SG-1]
 gi|148850179|gb|EDL64346.1| CspB [Bacillus sp. SG-1]
          Length = 65

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  EG     +DVF+H SA+   G   L EGQ V+++  ++ A
Sbjct: 1  MLQGKVKWFNAEKGFGFIEVEGQ----EDVFVHFSAIQGEGFKTLEEGQTVSFEI-EDGA 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|119475889|ref|ZP_01616241.1| Cold shock protein [marine gamma proteobacterium HTCC2143]
 gi|119450516|gb|EAW31750.1| Cold shock protein [marine gamma proteobacterium HTCC2143]
          Length = 69

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF+H SA+ S+G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNESKGFGFIEQE----SGPDVFVHFSAINSSGFKTLAEGQKVEFTVTQGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 61 -PQAENVVPL 69


>gi|294142287|ref|YP_003558265.1| cold shock-like protein cspG [Shewanella violacea DSS12]
 gi|22256741|sp|Q9S170|CSPG_SHEVD RecName: Full=Cold shock-like protein CspG
 gi|5869509|dbj|BAA84218.1| CspG [Shewanella violacea]
 gi|293328756|dbj|BAJ03487.1| cold shock-like protein cspG [Shewanella violacea DSS12]
          Length = 70

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     GDDVF+H  ++ S G   L EGQ V+++  Q    G
Sbjct: 6  TGLVKWFNEEKGFGFITQD---NGGDDVFVHFRSITSDGFKTLAEGQKVSFEVEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 LQAANVVAL 70


>gi|253681971|ref|ZP_04862768.1| conserved domain protein [Clostridium botulinum D str. 1873]
 gi|253561683|gb|EES91135.1| conserved domain protein [Clostridium botulinum D str. 1873]
          Length = 65

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT    TE G+DVF H S +   G   L EGQ V++D V+     
Sbjct: 2  TGTVKWFNAEKGFGFIT----TEEGNDVFAHFSQINREGFKTLDEGQNVSFDVVEGAKG- 56

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 57 -PQAENITIL 65


>gi|297583376|ref|YP_003699156.1| cold-shock DNA-binding domain-containing protein [Bacillus
          selenitireducens MLS10]
 gi|297141833|gb|ADH98590.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens
          MLS10]
          Length = 65

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ V ++ V+  A G
Sbjct: 2  QGKVKWFNAEKGFGFIERE----DGEDVFVHYSAIDQEGFKTLDEGQDVEFEVVEG-ARG 56

Query: 64 KYSAENLKL 72
            ++  +KL
Sbjct: 57 PQASNVVKL 65


>gi|161507089|ref|YP_001577043.1| putative cold shock protein [Lactobacillus helveticus DPC 4571]
 gi|160348078|gb|ABX26752.1| putative cold shock protein [Lactobacillus helveticus DPC 4571]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT         DVF+H SA+ + G  +L EGQ V+YD  Q  +
Sbjct: 1  MQTGTVKWFNADKGFGFIT----GSDNKDVFVHFSAIKTDGFKSLEEGQKVSYDVEQG-S 55

Query: 62 NGKYSAENL 70
           G  +   +
Sbjct: 56 RGPQATNVV 64


>gi|331017260|gb|EGH97316.1| cold shock domain family protein [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 77

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G  +  +D+F H SA+   G   L  GQ V ++ +Q   
Sbjct: 3  MLNGKVKWFNNAKGYGFILEDGKPD--EDLFAHYSAIQMDGYKTLKAGQPVRFEIIQGPK 60

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 61 G--LHAVNIQ 68


>gi|228990713|ref|ZP_04150678.1| Cold shock-like protein cspB [Bacillus pseudomycoides DSM 12442]
 gi|228996815|ref|ZP_04156449.1| Cold shock-like protein cspB [Bacillus mycoides Rock3-17]
 gi|229004492|ref|ZP_04162232.1| Cold shock-like protein cspB [Bacillus mycoides Rock1-4]
 gi|228756753|gb|EEM06058.1| Cold shock-like protein cspB [Bacillus mycoides Rock1-4]
 gi|228762876|gb|EEM11789.1| Cold shock-like protein cspB [Bacillus mycoides Rock3-17]
 gi|228769239|gb|EEM17837.1| Cold shock-like protein cspB [Bacillus pseudomycoides DSM 12442]
          Length = 65

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  DDVF+H +A+   G   L EGQ V++D V+ +  G
Sbjct: 2  QGKVKWFNNEKGFGFIE----IEGADDVFVHFTAIQGEGYKALEEGQEVSFDIVEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|52220784|ref|YP_086797.1| putative cold shock protein [Lactobacillus plantarum]
 gi|254555218|ref|YP_003061635.1| cold shock protein CspL [Lactobacillus plantarum JDM1]
 gi|300766776|ref|ZP_07076690.1| cold-shock protein [Lactobacillus plantarum subsp. plantarum ATCC
          14917]
 gi|21541531|gb|AAM61873.1|AF508808_2 cold shock protein [Lactobacillus plantarum]
 gi|51965675|emb|CAF32413.1| putative cold shock protein [Lactobacillus plantarum]
 gi|254044145|gb|ACT60938.1| cold shock protein CspL [Lactobacillus plantarum JDM1]
 gi|300495652|gb|EFK30806.1| cold-shock protein [Lactobacillus plantarum subsp. plantarum ATCC
          14917]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT         DVF+H S++ + G  +L EGQ V+Y+  Q D 
Sbjct: 1  MQSGTVKWFNADKGFGFIT----GSDNKDVFVHFSSIQTDGFKSLDEGQKVSYEVEQGD- 55

Query: 62 NGKYSAENL 70
           G  +   +
Sbjct: 56 RGPQATNVV 64


>gi|262040627|ref|ZP_06013865.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|259041991|gb|EEW43024.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
          Length = 70

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   D+F+H SA+ + G  +L EGQ V++   ++ A G
Sbjct: 6  TGIVKWFNADKGFGFITPD---DGSKDLFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 61

Query: 64 KYSAENLK 71
            +A N+ 
Sbjct: 62 P-AAGNVT 68


>gi|226304000|ref|YP_002763958.1| cold shock protein [Rhodococcus erythropolis PR4]
 gi|229494807|ref|ZP_04388563.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|226183115|dbj|BAH31219.1| probable cold shock protein [Rhodococcus erythropolis PR4]
 gi|229318303|gb|EEN84168.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H S +   G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQRVEFEVGQGTK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|297197159|ref|ZP_06914556.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|197716555|gb|EDY60589.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MAKGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIAAQGFRELQEGQKVEFDVTQGQK 57

Query: 62 NGKYSAENLK 71
               AEN++
Sbjct: 58 G--PQAENIR 65


>gi|221133721|ref|ZP_03560026.1| putative cold shock-like protein cspG [Glaciecola sp. HTCC2999]
          Length = 69

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N DKGYGFIT +     G DVF+H  A+ S G   L EGQ V+++  +     
Sbjct: 5  TGSVKWFNADKGYGFITQD---NGGKDVFVHFRAIQSEGYKTLPEGQKVSFEIEEGQKG- 60

Query: 64 KYSAENLKLV 73
             A N+  +
Sbjct: 61 -LQAANVNAI 69


>gi|78044182|ref|YP_359029.1| cold shock protein CspC [Carboxydothermus hydrogenoformans
          Z-2901]
 gi|77996297|gb|ABB15196.1| cold shock protein CspC [Carboxydothermus hydrogenoformans
          Z-2901]
          Length = 65

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KGYGFI  E     G DVF+H SA+   G   L EGQ V ++ V+    G
Sbjct: 2  QGKVKWFDPAKGYGFIERE----DGGDVFVHFSAIKGNGFKTLEEGQRVEFNIVEGT-RG 56

Query: 64 KYSAENLKL 72
            +A+ +KL
Sbjct: 57 PQAADVVKL 65


>gi|317126004|ref|YP_004100116.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
 gi|315590092|gb|ADU49389.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ S G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGADVFVHYSAIESGGYRELQEGQKVEFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               AE ++
Sbjct: 58 G--PQAEKVR 65


>gi|167565863|ref|ZP_02358779.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
          EO147]
 gi|167574414|ref|ZP_02367288.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
          C6786]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S +   G   L E Q V+Y+  +   
Sbjct: 1  MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAENQKVSYETKRGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--LQASNITPL 67


>gi|308274453|emb|CBX31052.1| Cold shock-like protein cspLA [uncultured Desulfobacterium sp.]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E    +G+DVF+H SA+ S G  +L+EG  VT+D V N  
Sbjct: 1  MANGTVKWFNDRKGFGFIEQE----NGNDVFVHHSAINSNGFKSLSEGDRVTFDVV-NGP 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 KGPGAANVTKL 66


>gi|302871348|ref|YP_003839984.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          obsidiansis OB47]
 gi|312128141|ref|YP_003993015.1| cold-shock DNA-binding domain-containing protein
          [Caldicellulosiruptor hydrothermalis 108]
 gi|312134639|ref|YP_004001977.1| cold-shock DNA-binding domain-containing protein
          [Caldicellulosiruptor owensensis OL]
 gi|312622949|ref|YP_004024562.1| cold-shock DNA-binding domain-containing protein
          [Caldicellulosiruptor kronotskyensis 2002]
 gi|312794129|ref|YP_004027052.1| cold-shock DNA-binding domain-containing protein
          [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|302574207|gb|ADL41998.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          obsidiansis OB47]
 gi|311774690|gb|ADQ04177.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          owensensis OL]
 gi|311778160|gb|ADQ07646.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|312181269|gb|ADQ41439.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312203416|gb|ADQ46743.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          kronotskyensis 2002]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+NP+KGYGFI    S ++G+DVF+H SA+   G   L EGQ V +D V+ +   
Sbjct: 2  RGRVKWFNPEKGYGFI----SADNGEDVFVHFSAINMEGYKTLAEGQTVEFDIVKTERG- 56

Query: 64 KYSAENLKLVP 74
             A N++ V 
Sbjct: 57 -NQAMNVRKVK 66


>gi|225873243|ref|YP_002754702.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
 gi|225794371|gb|ACO34461.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
          Length = 72

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          ++G +KW+N  KGYGFI      + G DVF+H SA+   G  +L EG  V +D VQ    
Sbjct: 4  YKGKVKWFNNAKGYGFI----GRDDGPDVFVHYSAIQIDGYKSLKEGDEVEFDIVQGQKG 59

Query: 63 GK 64
           +
Sbjct: 60 PQ 61


>gi|328883551|emb|CCA56790.1| cold shock protein [Streptomyces venezuelae ATCC 10712]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ V++D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIAASGFRELQEGQKVSFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|255587236|ref|XP_002534193.1| cold shock domain containing proteins, putative [Ricinus
          communis]
 gi|223525720|gb|EEF28187.1| cold shock domain containing proteins, putative [Ricinus
          communis]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E G+D+F H S + + G  +L E Q V+++ V+   
Sbjct: 1  MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSEIKTEGFKSLQENQKVSFE-VKMGP 56

Query: 62 NGKYSAENLKLV 73
           GK +A N+K V
Sbjct: 57 KGKQAA-NIKPV 67


>gi|161526063|ref|YP_001581075.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          multivorans ATCC 17616]
 gi|167587642|ref|ZP_02380030.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu]
 gi|189349222|ref|YP_001944850.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|221201715|ref|ZP_03574753.1| cold-shock domain family protein [Burkholderia multivorans CGD2M]
 gi|221207210|ref|ZP_03580220.1| cold-shock domain family protein [Burkholderia multivorans CGD2]
 gi|221213338|ref|ZP_03586313.1| cold-shock domain family protein [Burkholderia multivorans CGD1]
 gi|160343492|gb|ABX16578.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
          ATCC 17616]
 gi|189333244|dbj|BAG42314.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|221166790|gb|EED99261.1| cold-shock domain family protein [Burkholderia multivorans CGD1]
 gi|221172798|gb|EEE05235.1| cold-shock domain family protein [Burkholderia multivorans CGD2]
 gi|221178531|gb|EEE10940.1| cold-shock domain family protein [Burkholderia multivorans CGD2M]
 gi|325518815|gb|EGC98394.1| CspA family cold shock protein [Burkholderia sp. TJI49]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITPEG    GDD+F H S +   G   L E Q V ++ V+   
Sbjct: 1  MATGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVEGFKTLQENQKVEFE-VKTGP 56

Query: 62 NGKYSAE 68
           G  +A 
Sbjct: 57 KGLQAAN 63


>gi|238026086|ref|YP_002910317.1| Cold shock-like protein CspD [Burkholderia glumae BGR1]
 gi|330815379|ref|YP_004359084.1| Cold shock-like protein CspD [Burkholderia gladioli BSR3]
 gi|237875280|gb|ACR27613.1| Cold shock-like protein CspD [Burkholderia glumae BGR1]
 gi|327367772|gb|AEA59128.1| Cold shock-like protein CspD [Burkholderia gladioli BSR3]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITPEG    GDD+F H S +   G   L E Q V ++ V+   
Sbjct: 1  MATGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVDGFKTLQENQKVEFE-VKTGP 56

Query: 62 NGKYSAENLKLV 73
           G  +A N+K +
Sbjct: 57 KGLQAA-NIKPL 67


>gi|59713778|ref|YP_206553.1| cold shock protein [Vibrio fischeri ES114]
 gi|197337528|ref|YP_002158152.1| hypothetical protein VFMJ11_A0603 [Vibrio fischeri MJ11]
 gi|59482026|gb|AAW87665.1| cold shock protein [Vibrio fischeri ES114]
 gi|197314780|gb|ACH64229.1| conserved domain protein [Vibrio fischeri MJ11]
          Length = 68

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI  E    +G DVF H S + S G   L EGQ V++D  Q    G
Sbjct: 5  TGTVKWFNEEKGFGFIAQE----NGPDVFAHFSQIQSEGFKTLKEGQAVSFDVEQGQ-KG 59

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 60 PQAANIVAL 68


>gi|300782274|ref|YP_003762565.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
 gi|299791788|gb|ADJ42163.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFITP+     G DVF+H S +   G  +L E   V ++  Q   
Sbjct: 1  MTQGTVKWFNSEKGFGFITPD---NGGGDVFVHYSEIQGNGFKSLEENARVEFEIGQGQK 57

Query: 62 NGKYSAENL 70
            + ++  +
Sbjct: 58 GPQATSVTV 66


>gi|291523520|emb|CBK81813.1| cold-shock DNA-binding protein family [Coprococcus catus GD/7]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KG+GFI    S E G+DVF+H S + S G  +L EGQ V ++ ++   
Sbjct: 1  MNKGTVKWFNNQKGFGFI----SDEQGNDVFVHYSGIQSNGFKSLEEGQEVEFEVIEGQ- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 KGPQAVNVVKL 66


>gi|209809774|ref|YP_002265313.1| cold shock-like protein CspG [Aliivibrio salmonicida LFI1238]
 gi|208011337|emb|CAQ81788.1| cold shock-like protein CspG [Aliivibrio salmonicida LFI1238]
          Length = 69

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 5  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 60

Query: 64 KYSAENL 70
            +A  +
Sbjct: 61 PQAANVV 67


>gi|326789294|ref|YP_004307115.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
 gi|326540058|gb|ADZ81917.1| cold-shock DNA-binding domain protein [Clostridium lentocellum
          DSM 5427]
          Length = 65

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI+ E     GDDVF+H SA+   G  +L EGQ V +D  +     
Sbjct: 2  TGTVKWFNAEKGFGFISRE----GGDDVFVHFSAIQGDGFKSLEEGQAVNFDITKGPRG- 56

Query: 64 KYSAENLK 71
             AEN+ 
Sbjct: 57 -AQAENVT 63


>gi|50955888|ref|YP_063176.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952370|gb|AAT90071.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFI P+   +   DVF H   + + G   L E Q V Y+  Q   
Sbjct: 1  MAIGTVKWFNAEKGYGFIAPD---DGSVDVFAHFREIQTQGFRTLEENQKVEYELTQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 58 G--MQASNIRAV 67


>gi|331005216|ref|ZP_08328609.1| Cold shock protein CspC [gamma proteobacterium IMCC1989]
 gi|330420959|gb|EGG95232.1| Cold shock protein CspC [gamma proteobacterium IMCC1989]
          Length = 68

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF H SA+  +G   LTEGQ V +   Q     
Sbjct: 5  TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAIQGSGFKTLTEGQKVEFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+  V
Sbjct: 60 -PQAENINPV 68


>gi|298292419|ref|YP_003694358.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296928930|gb|ADH89739.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 71

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N +KGYGFI P+   + G DVF+H SAV  +GL  L EGQ V+++   + 
Sbjct: 1  MATMGTVKFFNTEKGYGFIRPD---DGGRDVFVHVSAVTRSGLGTLAEGQRVSFEVEPDK 57

Query: 61 ANGKYSAENLKL 72
                A +L+L
Sbjct: 58 RGKGPKAIDLQL 69


>gi|291534217|emb|CBL07330.1| cold-shock DNA-binding protein family [Megamonas hypermegale
          ART12/1]
          Length = 71

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFIT +   +   D+F+H SA+ S G   L EGQ VT+D   +  
Sbjct: 1  MGTGTVKWFNSGKGYGFITND---DGSGDLFVHFSAINSEGFKTLEEGQKVTFDTEADSR 57

Query: 62 NG-KYSAENLKLVP 74
          +  K  A N+ +V 
Sbjct: 58 DASKLRAVNVTVVK 71


>gi|311067393|ref|YP_003972316.1| CspB protein [Bacillus atrophaeus 1942]
 gi|310867910|gb|ADP31385.1| CspB [Bacillus atrophaeus 1942]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ + 
Sbjct: 1  MLEGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQTVSFEIVEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|307243261|ref|ZP_07525432.1| major cold shock protein CspA [Peptostreptococcus stomatis DSM
          17678]
 gi|306493389|gb|EFM65371.1| major cold shock protein CspA [Peptostreptococcus stomatis DSM
          17678]
          Length = 66

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI+ EG     +D+F+H SA+   G  +L EGQ V ++ V +  
Sbjct: 1  MKIGTVKWFNNEKGFGFISVEGE----NDMFVHFSAIQGDGYKSLEEGQKVEFEVV-DGE 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGPQAANVTRI 66


>gi|295107075|emb|CBL04618.1| cold-shock DNA-binding protein family [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP+KGYGFI+       G+D+F+H S +   G   L EGQ V +D      
Sbjct: 1  MAEGTVKWFNPEKGYGFISQ----NDGEDLFVHFSEIKMDGFKTLDEGQAVQFDVT-TGQ 55

Query: 62 NGKYSAENLK 71
          NGK  A N+ 
Sbjct: 56 NGKLQASNVT 65


>gi|239940492|ref|ZP_04692429.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|239986973|ref|ZP_04707637.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
 gi|291443921|ref|ZP_06583311.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|291346868|gb|EFE73772.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S + ++G   L EGQ V++D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNINASGFRELQEGQKVSFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|239930071|ref|ZP_04687024.1| putative cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291438408|ref|ZP_06577798.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341303|gb|EFE68259.1| cold shock protein [Streptomyces ghanaensis ATCC 14672]
          Length = 67

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ VT+D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|297583350|ref|YP_003699130.1| cold-shock DNA-binding domain-containing protein [Bacillus
          selenitireducens MLS10]
 gi|297141807|gb|ADH98564.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens
          MLS10]
          Length = 65

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V +D  Q   
Sbjct: 1  MTQGTVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLDEGQTVNFDIEQGQ- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|91783230|ref|YP_558436.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|91687184|gb|ABE30384.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     GDD+F H S +   G   L E Q V+Y+  +   
Sbjct: 1  MDTGTVKWFNDSKGFGFITPDA---GGDDLFAHFSEIRGDGFKTLAENQKVSYE-TKRGP 56

Query: 62 NGKYSAE 68
           G  +A 
Sbjct: 57 KGMQAAN 63


>gi|16077975|ref|NP_388791.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221308749|ref|ZP_03590596.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221313071|ref|ZP_03594876.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
          NCIB 3610]
 gi|221317997|ref|ZP_03599291.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
          JH642]
 gi|221322271|ref|ZP_03603565.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str.
          SMY]
 gi|296332331|ref|ZP_06874792.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305673610|ref|YP_003865282.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis subsp. spizizenii str.
          W23]
 gi|321314635|ref|YP_004206922.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis BSn5]
 gi|416834|sp|P32081|CSPB_BACSU RecName: Full=Cold shock protein CspB; AltName: Full=Major cold
          shock protein
 gi|114793771|pdb|2ES2|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Cold
          Shock Protein Bs-Cspb In Complex With Hexathymidine
 gi|116667125|pdb|2F52|A Chain A, Solution Structure Of Cold Shock Protein Cspb From
          Bacillus Subtilis In Complex With Heptathymidine
 gi|157830704|pdb|1CSP|A Chain A, Crystal Structure Of The Bacillus Subtilis Major Cold
          Shock Protein, Cspb: A Universal Nucleic-Acid Binding
          Domain
 gi|157830705|pdb|1CSQ|A Chain A, Crystal Structure Of The Bacillus Subtilis Major Cold
          Shock Protein, Cspb: A Universal Nucleic-Acid Binding
          Domain
 gi|157832148|pdb|1NMF|A Chain A, Major Cold-Shock Protein, Nmr, 20 Structures
 gi|157832149|pdb|1NMG|A Chain A, Major Cold-Shock Protein, Nmr, Minimized Average
          Structure
 gi|297761|emb|CAA42235.1| cold shock protein (CspB) [Bacillus subtilis]
 gi|1239985|emb|CAA65693.1| cold shock protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|1336658|gb|AAB01346.1| cold shock protein CspB [Bacillus subtilis subsp. subtilis str.
          JH642]
 gi|2633233|emb|CAB12738.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis subsp. subtilis str.
          168]
 gi|291483360|dbj|BAI84435.1| major cold-shock protein [Bacillus subtilis subsp. natto BEST195]
 gi|296150249|gb|EFG91137.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305411854|gb|ADM36973.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis subsp. spizizenii str.
          W23]
 gi|320020909|gb|ADV95895.1| major cold-shock protein, RNA helicase co-factor, RNA
          co-chaperone [Bacillus subtilis BSn5]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ + 
Sbjct: 1  MLEGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|308188556|ref|YP_003932687.1| Cold shock-like protein cspA [Pantoea vagans C9-1]
 gi|308059066|gb|ADO11238.1| Cold shock-like protein cspA [Pantoea vagans C9-1]
          Length = 70

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H SA+ +     L EGQ V++   +N A G
Sbjct: 6  TGLVKWFNSDKGFGFITPD---DGSKDVFVHFSAIQADNYKTLDEGQKVSFTI-ENGAKG 61

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 62 P-AAGNVTAL 70


>gi|160933904|ref|ZP_02081291.1| hypothetical protein CLOLEP_02766 [Clostridium leptum DSM 753]
 gi|156866577|gb|EDO59949.1| hypothetical protein CLOLEP_02766 [Clostridium leptum DSM 753]
          Length = 70

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GF++ +     G+DVF+H SA+   G  +L EGQ VT+D   +  
Sbjct: 1  MNNGTVKWFNSEKGFGFLSND---NGGEDVFVHFSAIVGEGFKSLAEGQKVTFDTETDPK 57

Query: 62 N-GKYSAENLKLV 73
          N  K  A N+  V
Sbjct: 58 NSKKLRAVNVCPV 70


>gi|126735271|ref|ZP_01751017.1| cold shock family protein [Roseobacter sp. CCS2]
 gi|126715826|gb|EBA12691.1| cold shock family protein [Roseobacter sp. CCS2]
          Length = 69

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   + G D+F+H SAV  +GL  L + Q VT+D ++   
Sbjct: 1  MPNGTVKWFNTTKGYGFIAPD---DGGADIFVHISAVEQSGLTGLADDQKVTFDLIEG-R 56

Query: 62 NGKYSAENLKLVP 74
          +G+  A N+  V 
Sbjct: 57 DGRQMAGNIAKVE 69


>gi|99080915|ref|YP_613069.1| cold-shock DNA-binding protein family protein [Ruegeria sp.
          TM1040]
 gi|99037195|gb|ABF63807.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040]
          Length = 68

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI  EG +    DVF+H SAV  +GL  L +GQ VT++  Q+  
Sbjct: 1  MANGTVKWFNSTKGYGFIAVEGRSN---DVFVHISAVERSGLTGLADGQAVTFEI-QSGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA +L L
Sbjct: 57 DGRESATDLAL 67


>gi|317053824|ref|YP_004117849.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
          At-9b]
 gi|316951819|gb|ADU71293.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
          Length = 70

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW+N +KG+GFI+PE       DVF+H SA+      +L EGQ V +  V++   G
Sbjct: 6  RGTVKWFNSEKGFGFISPE---NGSKDVFVHYSAIQGTDYRSLDEGQRVEFS-VEDGQKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVVGL 70


>gi|242373029|ref|ZP_04818603.1| cold-shock protein [Staphylococcus epidermidis M23864:W1]
 gi|242349183|gb|EES40784.1| cold-shock protein [Staphylococcus epidermidis M23864:W1]
          Length = 75

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E     G DVF+H SA+   G  +L EGQ V +D V+ + 
Sbjct: 10 MNNGTVKWFNAEKGFGFIERE----DGGDVFVHFSAIVEDGYKSLEEGQSVEFDIVEGE- 64

Query: 62 NGKYSAENLKL 72
           G+ ++  +K+
Sbjct: 65 RGEQASNVVKM 75


>gi|126725654|ref|ZP_01741496.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2150]
 gi|126704858|gb|EBA03949.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2150]
          Length = 68

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   + G DVF+H SAV  AGL  L++ Q V YD  +   
Sbjct: 1  MPNGTVKWFNQTKGFGFIAPE---DGGSDVFVHISAVERAGLTGLSDNQKVQYDLEEG-R 56

Query: 62 NGKYSAENLKL 72
          +G+  A N+ L
Sbjct: 57 DGRSLAANIVL 67


>gi|16262519|ref|NP_435312.1| CspA8 Cold shock family protein [Sinorhizobium meliloti 1021]
 gi|307300737|ref|ZP_07580512.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307319148|ref|ZP_07598578.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|14523127|gb|AAK64724.1| CspA8 Cold shock family protein [Sinorhizobium meliloti 1021]
 gi|306895255|gb|EFN26011.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306904271|gb|EFN34856.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 69

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ ++ EGQ + ++  +++ 
Sbjct: 1  MTTGTVKWFNSTKGFGFIAPD---DGSADVFVHISAVERAGMNSIVEGQKLGFELERDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA  L+
Sbjct: 58 SGKMSAGQLR 67


>gi|78062001|ref|YP_371909.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
          383]
 gi|115358813|ref|YP_775951.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria AMMD]
 gi|134293656|ref|YP_001117392.1| cold-shock DNA-binding protein family protein [Burkholderia
          vietnamiensis G4]
 gi|170700879|ref|ZP_02891866.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171318778|ref|ZP_02907917.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|172063543|ref|YP_001811194.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|206563659|ref|YP_002234422.1| putative cold shock protein [Burkholderia cenocepacia J2315]
 gi|77969886|gb|ABB11265.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
 gi|115284101|gb|ABI89617.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
          AMMD]
 gi|134136813|gb|ABO57927.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
          G4]
 gi|170134197|gb|EDT02538.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171096010|gb|EDT40941.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|171996060|gb|ACB66978.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MC40-6]
 gi|198039699|emb|CAR55669.1| putative cold shock protein [Burkholderia cenocepacia J2315]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+     GDD+F H S + + G   L E Q V+++  Q   
Sbjct: 1  MDTGIVKWFNDSKGFGFITPD---NGGDDLFAHFSEIRADGFKTLAENQKVSFETKQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 58 G--LQAANIKPL 67


>gi|146311055|ref|YP_001176129.1| cold-shock DNA-binding protein family protein [Enterobacter sp.
          638]
 gi|145317931|gb|ABP60078.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
          Length = 73

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V +D V    
Sbjct: 1  MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFD-VHLGP 56

Query: 62 NGKYSAENLKLVPKS 76
           G +++  + +  ++
Sbjct: 57 KGNHASVIVPIEAEA 71


>gi|330817033|ref|YP_004360738.1| Cold-shock DNA-binding domain protein [Burkholderia gladioli
          BSR3]
 gi|327369426|gb|AEA60782.1| Cold-shock DNA-binding domain protein [Burkholderia gladioli
          BSR3]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFITP+   + G+D+F+H S +   G  +L + Q V Y+ V+N  
Sbjct: 1  MNTGTVKWFNDAKGFGFITPD---DGGEDLFVHFSEIKITGFKSLYDNQRVRYE-VRNGP 56

Query: 62 NGKYSAEN 69
           GK++A+ 
Sbjct: 57 KGKHAADV 64


>gi|294816656|ref|ZP_06775298.1| Cold-shock domain family protein [Streptomyces clavuligerus ATCC
          27064]
 gi|294321471|gb|EFG03606.1| Cold-shock domain family protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 74

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KGYGFITPE    SG D+F+H  A+   G  +L EGQ VT++ VQ   
Sbjct: 8  RQNGTVKWFNDEKGYGFITPE----SGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQGQK 63

Query: 62 NGKYSAENLKLV 73
               A+ ++++
Sbjct: 64 G--MQADRVQVL 73


>gi|258517067|ref|YP_003193289.1| cold-shock DNA-binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257780772|gb|ACV64666.1| cold-shock DNA-binding domain protein [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 65

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KGYGFI  E     G DVF+H SA+ S G   L EGQ V +D V+  A G 
Sbjct: 3  GKVKWFSAEKGYGFIERE----DGGDVFVHFSAIQSEGFKTLEEGQEVEFDIVEG-ARGP 57

Query: 65 YSAENLKL 72
           +A  +K+
Sbjct: 58 QAANVMKV 65


>gi|254387116|ref|ZP_05002389.1| cold shock protein [Streptomyces sp. Mg1]
 gi|194345934|gb|EDX26900.1| cold shock protein [Streptomyces sp. Mg1]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   LTEGQ V++D  Q   
Sbjct: 1  MALGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELTEGQRVSFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|90581342|ref|ZP_01237138.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|90437452|gb|EAS62647.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|119116583|dbj|BAF40852.1| cold-shock protein CspV [Photobacterium phosphoreum]
          Length = 70

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 6  TGLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 LQAANVVAL 70


>gi|51244812|ref|YP_064696.1| cold-shock protein [Desulfotalea psychrophila LSv54]
 gi|50875849|emb|CAG35689.1| probable cold-shock protein [Desulfotalea psychrophila LSv54]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E     GDD+F+H S+++  G   L EG  V++D  Q   
Sbjct: 1  MAEGTVKWFNDAKGFGFIEQE----GGDDLFVHYSSISGEGFKTLQEGTRVSFDIEQG-P 55

Query: 62 NGKYSAENLKL 72
           G  +A  + L
Sbjct: 56 KGPAAANVVVL 66


>gi|207723599|ref|YP_002253998.1| cold shock-like protein cspd [Ralstonia solanacearum MolK2]
 gi|206588801|emb|CAQ35764.1| cold shock-like protein cspd [Ralstonia solanacearum MolK2]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+   E G+++F H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MASGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMDGFKTLKEGQRVVFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQATNIQ 65


>gi|197284583|ref|YP_002150455.1| cold shock-like protein [Proteus mirabilis HI4320]
 gi|227356765|ref|ZP_03841150.1| cold shock family protein [Proteus mirabilis ATCC 29906]
 gi|194682070|emb|CAR41608.1| cold shock-like protein [Proteus mirabilis HI4320]
 gi|227163055|gb|EEI47990.1| cold shock family protein [Proteus mirabilis ATCC 29906]
          Length = 69

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP      G+D+F H S++   G   L  GQ V Y  ++   
Sbjct: 1  METGTVKWFNNAKGFGFITP---AAGGEDIFAHYSSIRMEGYRTLKAGQKVNYSTIKGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|312138714|ref|YP_004006050.1| cold shock protein [Rhodococcus equi 103S]
 gi|311888053|emb|CBH47365.1| cold shock protein [Rhodococcus equi 103S]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI PE   +   DVF H S +   G  +L E Q V+YD  Q   
Sbjct: 1  MANGTVKWFNAEKGFGFIAPE---DGSADVFAHYSEIQGGGFRSLDENQRVSYDLGQGAK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--PQATNITAI 67


>gi|229086124|ref|ZP_04218344.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
 gi|228697183|gb|EEL49948.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ VT++  Q + 
Sbjct: 1  MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGDGFKTLEEGQEVTFEVEQGN- 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGPQATNVVK 65


>gi|226308783|ref|YP_002768743.1| cold shock protein [Rhodococcus erythropolis PR4]
 gi|229488570|ref|ZP_04382436.1| putative cold-shock DNA-binding domain protein [Rhodococcus
          erythropolis SK121]
 gi|226187900|dbj|BAH36004.1| probable cold shock protein [Rhodococcus erythropolis PR4]
 gi|229324074|gb|EEN89829.1| putative cold-shock DNA-binding domain protein [Rhodococcus
          erythropolis SK121]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI P+   +   DVF+H S ++  G  +L E Q V ++  Q   
Sbjct: 1  MAQGIVKWFNGEKGFGFIAPD---DGTPDVFVHYSEISGNGYKSLDENQRVEFEVGQGQK 57

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 58 G--PQATNVRAV 67


>gi|33596617|ref|NP_884260.1| cold shock-like protein [Bordetella parapertussis 12822]
 gi|33601232|ref|NP_888792.1| cold shock-like protein [Bordetella bronchiseptica RB50]
 gi|33573318|emb|CAE37301.1| cold shock-like protein [Bordetella parapertussis]
 gi|33575667|emb|CAE32745.1| cold shock-like protein [Bordetella bronchiseptica RB50]
          Length = 81

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFITPE     G D+F H S + + G  +L E Q V++       
Sbjct: 15 METGVVKWFNAEKGYGFITPEA---GGKDLFAHFSEIQANGFKSLEENQRVSF-VTAMGP 70

Query: 62 NGKYS 66
           G  +
Sbjct: 71 KGPQA 75


>gi|145221984|ref|YP_001132662.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          gilvum PYR-GCK]
 gi|315446276|ref|YP_004079155.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
 gi|145214470|gb|ABP43874.1| cold-shock DNA-binding protein family [Mycobacterium gilvum
          PYR-GCK]
 gi|315264579|gb|ADU01321.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H + +  +G   L E Q V ++  Q+  
Sbjct: 1  MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|294630558|ref|ZP_06709118.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292833891|gb|EFF92240.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIQQDG---GGPDVFAHYSNIAAQGFRELQEGQRVNFDVTQGQK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENIT 65


>gi|253733849|ref|ZP_04868014.1| cold-shock protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|297209461|ref|ZP_06925859.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|300911485|ref|ZP_07128934.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH70]
 gi|253728152|gb|EES96881.1| cold-shock protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|296885922|gb|EFH24857.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|300887664|gb|EFK82860.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH70]
          Length = 71

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E    +G DVF+H S +AS G   L EGQ VT++  +   
Sbjct: 6  MNNGTVKWFNAEKGFGFIEQE----NGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQR 61

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 62 G--DQAVNVQTV 71


>gi|89072407|ref|ZP_01158986.1| cold shock protein [Photobacterium sp. SKA34]
 gi|90577241|ref|ZP_01233052.1| cold shock protein [Vibrio angustum S14]
 gi|89051939|gb|EAR57391.1| cold shock protein [Photobacterium sp. SKA34]
 gi|90440327|gb|EAS65507.1| cold shock protein [Vibrio angustum S14]
          Length = 69

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 5  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 LQAANVVAL 69


>gi|266621457|ref|ZP_06114392.1| cold shock protein B [Clostridium hathewayi DSM 13479]
 gi|288866898|gb|EFC99196.1| cold shock protein B [Clostridium hathewayi DSM 13479]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KGYGFIT +   E+G++VF+H S + + G   L EGQ VTYD  + + 
Sbjct: 1  MNNGTVKWFNGAKGYGFITND---ETGEEVFVHFSGIMADGYKTLEEGQKVTYDTTEGNR 57

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 58 G--LQAVNV 64


>gi|257865258|ref|ZP_05644911.1| cold shock protein CspC [Enterococcus casseliflavus EC30]
 gi|257871586|ref|ZP_05651239.1| cold shock protein CspC [Enterococcus casseliflavus EC10]
 gi|257799192|gb|EEV28244.1| cold shock protein CspC [Enterococcus casseliflavus EC30]
 gi|257805750|gb|EEV34572.1| cold shock protein CspC [Enterococcus casseliflavus EC10]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N DKG+GFIT     E+G DVF H SA+ + G  +L EGQ VT+D  +   
Sbjct: 1  MNKGTVKWFNADKGFGFIT----GENGQDVFAHFSAIQADGFKSLDEGQAVTFDTEEGQR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--MQAVNI 63


>gi|218134817|ref|ZP_03463621.1| hypothetical protein BACPEC_02720 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990202|gb|EEC56213.1| hypothetical protein BACPEC_02720 [Bacteroides pectinophilus ATCC
           43243]
          Length = 111

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++KW+N  KGYGFI    S ESG+DVF+H S +   G  +L EG  V +D V N A G
Sbjct: 48  KGTVKWFNNQKGYGFI----SDESGNDVFVHYSGLNMEGFKSLDEGAEVEFDVV-NGAKG 102

Query: 64  KYSAENLKL 72
             +    KL
Sbjct: 103 PQATNVTKL 111


>gi|153832932|ref|ZP_01985599.1| conserved domain protein [Vibrio harveyi HY01]
 gi|156976622|ref|YP_001447528.1| hypothetical protein VIBHAR_05396 [Vibrio harveyi ATCC BAA-1116]
 gi|269963648|ref|ZP_06177971.1| cold shock DNA-binding domain protein [Vibrio harveyi 1DA3]
 gi|148870855|gb|EDL69754.1| conserved domain protein [Vibrio harveyi HY01]
 gi|156528216|gb|ABU73301.1| hypothetical protein VIBHAR_05396 [Vibrio harveyi ATCC BAA-1116]
 gi|269831661|gb|EEZ85797.1| cold shock DNA-binding domain protein [Vibrio harveyi 1DA3]
          Length = 69

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H SA+   G   L EGQ V ++  Q     
Sbjct: 6  TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAIQGDGFRTLVEGQKVEFEITQGQKG- 60

Query: 64 KYSAENLKLV 73
             AE + LV
Sbjct: 61 -PQAEKITLV 69


>gi|52079383|ref|YP_078174.1| major cold-shock protein [Bacillus licheniformis ATCC 14580]
 gi|52784743|ref|YP_090572.1| CspB [Bacillus licheniformis ATCC 14580]
 gi|154685371|ref|YP_001420532.1| CspB [Bacillus amyloliquefaciens FZB42]
 gi|308172897|ref|YP_003919602.1| major cold-shock protein [Bacillus amyloliquefaciens DSM 7]
 gi|319646836|ref|ZP_08001065.1| cold shock protein cspB [Bacillus sp. BT1B_CT2]
 gi|52002594|gb|AAU22536.1| major cold-shock protein [Bacillus licheniformis ATCC 14580]
 gi|52347245|gb|AAU39879.1| CspB [Bacillus licheniformis ATCC 14580]
 gi|154351222|gb|ABS73301.1| CspB [Bacillus amyloliquefaciens FZB42]
 gi|307605761|emb|CBI42132.1| major cold-shock protein [Bacillus amyloliquefaciens DSM 7]
 gi|317391424|gb|EFV72222.1| cold shock protein cspB [Bacillus sp. BT1B_CT2]
 gi|328552537|gb|AEB23029.1| major cold-shock protein [Bacillus amyloliquefaciens TA208]
 gi|328910937|gb|AEB62533.1| major cold-shock protein [Bacillus amyloliquefaciens LL3]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ + 
Sbjct: 1  MLEGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQSVSFEIVEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|99081593|ref|YP_613747.1| cold-shock DNA-binding protein family protein [Ruegeria sp.
          TM1040]
 gi|99037873|gb|ABF64485.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040]
          Length = 68

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   +   DVFLH SAV  AG+  + +GQ VT+D  +N  
Sbjct: 1  MANGTVKWFNATKGFGFIQPE---DGTQDVFLHISAVERAGINRIDDGQKVTFDL-ENGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRTSASNLAL 67


>gi|294636901|ref|ZP_06715229.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
 gi|291089892|gb|EFE22453.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
          Length = 81

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI      + G DVF+H SA+   G   L EGQ V Y   Q+   
Sbjct: 16 KTGQVKWFNESKGFGFIEQH---DGGKDVFVHFSAITGDGFKTLAEGQRVEYTI-QDSPR 71

Query: 63 GKYSAENLKL 72
          G  +A  + L
Sbjct: 72 GPAAANVVAL 81


>gi|271965975|ref|YP_003340171.1| cold-shock DNA-binding domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270509150|gb|ACZ87428.1| putative cold-shock DNA-binding domain protein [Streptosporangium
          roseum DSM 43021]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIAAQGYRELQEGQKVSFDITQGQK 57

Query: 62 NGKYSAENLKLV 73
               AEN+  V
Sbjct: 58 G--PQAENIVPV 67


>gi|223986942|ref|ZP_03636915.1| hypothetical protein HOLDEFILI_04238 [Holdemania filiformis DSM
          12042]
 gi|223961089|gb|EEF65628.1| hypothetical protein HOLDEFILI_04238 [Holdemania filiformis DSM
          12042]
          Length = 69

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N DKGYGFIT +       D+F+H S +   G  +L EGQ V+++   +  
Sbjct: 1  MSTGKVKWFNGDKGYGFITDDQGQ---GDIFVHFSGINGNGYKSLEEGQKVSFEVENDAR 57

Query: 62 NGKYSAENLKLV 73
          + K  A N+ ++
Sbjct: 58 SNKSRAVNVTVL 69


>gi|182439288|ref|YP_001827007.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|282862092|ref|ZP_06271155.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|302559563|ref|ZP_07311905.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
 gi|326779940|ref|ZP_08239205.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178467804|dbj|BAG22324.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|282563117|gb|EFB68656.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|302477181|gb|EFL40274.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
 gi|320011359|gb|ADW06209.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
 gi|326660273|gb|EGE45119.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ V++D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVSFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|152975949|ref|YP_001375466.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152024701|gb|ABS22471.1| putative cold-shock DNA-binding domain protein [Bacillus
          cytotoxicus NVH 391-98]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ VT++  Q + 
Sbjct: 1  MQNGKVKWFNAEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN- 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGPQATNVVK 65


>gi|54303583|ref|YP_133576.1| putative cold shock-like protein [Photobacterium profundum SS9]
 gi|54309095|ref|YP_130115.1| putative cold shock-like protein [Photobacterium profundum SS9]
 gi|46913527|emb|CAG20313.1| putative Cold shock-like protein [Photobacterium profundum SS9]
 gi|46917014|emb|CAG23776.1| putative Cold shock-like protein [Photobacterium profundum SS9]
          Length = 69

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 5  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 60

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 61 LQAANVVAI 69


>gi|84497345|ref|ZP_00996167.1| putative cold shock protein [Janibacter sp. HTCC2649]
 gi|84382233|gb|EAP98115.1| putative cold shock protein [Janibacter sp. HTCC2649]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ S G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGADVFVHYSAIESGGYRELQEGQKVEFDVTQGPK 57

Query: 62 NGKYSAENLK 71
               AE +K
Sbjct: 58 G--PQAEKVK 65


>gi|119717093|ref|YP_924058.1| cold-shock DNA-binding protein family protein [Nocardioides sp.
          JS614]
 gi|119537754|gb|ABL82371.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI  +G    G DVF+H +A+A  G  +L + Q V ++  Q   
Sbjct: 1  MAQGTVKWFNDDKGFGFIAQDG---GGPDVFVHHTAIAGTGFKSLKDDQRVEFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               AEN++
Sbjct: 58 G--PQAENVR 65


>gi|115474635|ref|NP_001060914.1| Os08g0129200 [Oryza sativa Japonica Group]
 gi|29467522|dbj|BAC66711.1| putative cold shock protein-1 [Oryza sativa Japonica Group]
 gi|113622883|dbj|BAF22828.1| Os08g0129200 [Oryza sativa Japonica Group]
 gi|187609563|gb|ACD13289.1| cold shock domain protein 2 [Oryza sativa Japonica Group]
 gi|215715378|dbj|BAG95129.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 197

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KG+GFITP+   + G+D+F+H+S++ S G  +L +G +V +    +  +G
Sbjct: 7  KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVG-SGNDG 62

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 63 RTKAVDVT 70


>gi|107027431|ref|YP_624942.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia AU 1054]
 gi|105896805|gb|ABF79969.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          AU 1054]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFITP+     GDD+F H S +   G   L EGQ V+Y+  +N  
Sbjct: 1  MDTGTVKWFNDNKGFGFITPDS---GGDDLFAHFSEIRGDGFKTLAEGQKVSYE-TKNGP 56

Query: 62 NGKYSAENL 70
           G  ++  +
Sbjct: 57 KGLQASNIV 65


>gi|260772638|ref|ZP_05881554.1| cold shock protein CspD [Vibrio metschnikovii CIP 69.14]
 gi|260611777|gb|EEX36980.1| cold shock protein CspD [Vibrio metschnikovii CIP 69.14]
          Length = 73

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG  E   D+F H S +   G   L  GQ V Y+  Q   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGGNE---DIFAHYSTIKMDGYRTLKAGQQVAYEVEQG-P 56

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 57 KGYHASNVVPI 67


>gi|332560384|ref|ZP_08414706.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N]
 gi|332278096|gb|EGJ23411.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N]
          Length = 68

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G      DVF+H +A+  AG+  L +GQ V++D  + D 
Sbjct: 1  MANGTVKWFNATKGFGFIAPAG---GSKDVFIHVTALERAGIRQLDDGQAVSFDL-ERDR 56

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67


>gi|320449142|ref|YP_004201238.1| cold shock protein, CSD family [Thermus scotoductus SA-01]
 gi|320149311|gb|ADW20689.1| cold shock protein, CSD family [Thermus scotoductus SA-01]
          Length = 68

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  E     G DVF+H +A+ + G   L EG  V ++      
Sbjct: 1  MKKGTVKWFNAEKGYGFIQQE----EGPDVFVHFTAIEAEGFRTLNEGDRVEFEVEAGRG 56

Query: 62 NGKYSAENLKLV 73
               A+ ++ +
Sbjct: 57 GKGPQAKKVRRL 68


>gi|310658174|ref|YP_003935895.1| major cold shock protein [Clostridium sticklandii DSM 519]
 gi|308824952|emb|CBH20990.1| major cold shock protein [Clostridium sticklandii]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI+ EG      DVF+H SA+ S G  +L EGQ V ++ V  D 
Sbjct: 1  MKNGIVKWFNAEKGFGFISVEGE----KDVFVHFSAIQSEGYRSLEEGQEVQFEIVDGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGPQAANVTRI 66


>gi|254293790|ref|YP_003059813.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
 gi|254042321|gb|ACT59116.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
          Length = 69

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K+YN  KG+GFI P+     G+DVF+H +A+  AG+  L+EGQ V++D  Q+  
Sbjct: 1  METGTVKFYNDTKGFGFIAPD---NGGNDVFVHATALERAGMNGLSEGQKVSFDTAQDKR 57

Query: 62 NGKYSAENLK 71
          +GK + +N++
Sbjct: 58 SGKMAVDNIQ 67


>gi|145294439|ref|YP_001137260.1| hypothetical protein cgR_0394 [Corynebacterium glutamicum R]
 gi|140844359|dbj|BAF53358.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP+KG+GFI P   ++   DVF+H S +   G   L E QLV ++  +   
Sbjct: 1  MAQGTVKWFNPEKGFGFIAP---SDGSADVFVHYSEIQGNGFRTLEENQLVEFEIGEGAK 57

Query: 62 NGKYSAE 68
            +  A 
Sbjct: 58 GLQAQAV 64


>gi|91792287|ref|YP_561938.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217]
 gi|91714289|gb|ABE54215.1| cold-shock DNA-binding protein family [Shewanella denitrificans
          OS217]
          Length = 70

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+     G DVF+H  ++ S G   L EGQ V+++  Q    G
Sbjct: 6  TGLVKWFNEDKGFGFITPD---NGGADVFVHFRSITSEGFKTLAEGQKVSFEVEQGQ-KG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PQAANV 67


>gi|26989186|ref|NP_744611.1| cold shock protein CspA [Pseudomonas putida KT2440]
 gi|148548435|ref|YP_001268537.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida F1]
 gi|325276815|ref|ZP_08142516.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
 gi|24984025|gb|AAN68075.1|AE016439_10 cold shock protein CspA [Pseudomonas putida KT2440]
 gi|63034352|gb|AAY28469.1| cold shock protein A-2 [Pseudomonas putida]
 gi|148512493|gb|ABQ79353.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
 gi|313499448|gb|ADR60814.1| Cold shock protein capa, fragment-related protein [Pseudomonas
          putida BIRD-1]
 gi|324098053|gb|EGB96198.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
          Length = 70

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G++KW+N +KGYGFITP G    GDD+F+H  A+ S G  +L EGQ V++   +   
Sbjct: 4  RQQGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAERGQ 59

Query: 62 NGKYSAEN 69
           G  +A+ 
Sbjct: 60 KGMQAAQV 67


>gi|148975746|ref|ZP_01812577.1| putative Cold shock-like protein [Vibrionales bacterium SWAT-3]
 gi|145964819|gb|EDK30071.1| putative Cold shock-like protein [Vibrionales bacterium SWAT-3]
          Length = 70

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          + G++KW+N +KG+GFI+ +     G DVF+H  A+ S G   L EGQ V+++ V+N   
Sbjct: 5  NTGTVKWFNEEKGFGFISQD---NGGADVFVHFRAIVSEGFKTLKEGQKVSFE-VENGQK 60

Query: 63 GKYSAENL 70
          G  +A  +
Sbjct: 61 GLQAANVV 68


>gi|127512097|ref|YP_001093294.1| cold-shock DNA-binding domain-containing protein [Shewanella
          loihica PV-4]
 gi|126637392|gb|ABO23035.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4]
          Length = 69

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFI        G DVF+H  A+ S G   L EGQ VT+D  Q    G
Sbjct: 5  TGTVKWFNEDKGFGFIEQ---ANGGADVFVHFRAIVSDGYKTLAEGQKVTFDIEQGQ-KG 60

Query: 64 KYSAENL 70
            +A  +
Sbjct: 61 LQAANVV 67


>gi|327440660|dbj|BAK17025.1| cold shock protein [Solibacillus silvestris StLB046]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H+G++KW++ +KGYGFI     +  G+DVF+H + +   G  +L EGQ+V +D V +  
Sbjct: 1  MHQGTVKWFDNEKGYGFIE----SADGEDVFVHFTGIQEEGFRSLDEGQVVEFDLV-DGI 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 RGPQAANVIK 65


>gi|294499936|ref|YP_003563636.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295705319|ref|YP_003598394.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294349873|gb|ADE70202.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294802978|gb|ADF40044.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 65

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ VT++ V+ + 
Sbjct: 1  MLQGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQEVTFEIVEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|257868635|ref|ZP_05648288.1| DNA-binding cold-shock protein [Enterococcus gallinarum EG2]
 gi|257802799|gb|EEV31621.1| DNA-binding cold-shock protein [Enterococcus gallinarum EG2]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+   G   L EGQ VT+D V+   
Sbjct: 1  MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQGDGFKTLDEGQAVTFD-VEEGQ 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGLQATNIVK 65


>gi|295839487|ref|ZP_06826420.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|302518459|ref|ZP_07270801.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
 gi|318062555|ref|ZP_07981276.1| cold shock protein [Streptomyces sp. SA3_actG]
 gi|318078420|ref|ZP_07985752.1| cold shock protein [Streptomyces sp. SA3_actF]
 gi|295827504|gb|EFG65433.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|302427354|gb|EFK99169.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
          Length = 68

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +AS+G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIASSGFRELIEGQKVEFDVTQGQK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--LQAENIT 65


>gi|229178110|ref|ZP_04305481.1| Cold shock-like protein cspB [Bacillus cereus 172560W]
 gi|228605240|gb|EEK62690.1| Cold shock-like protein cspB [Bacillus cereus 172560W]
          Length = 65

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  DDVF+H SA+   G   L +GQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGDGYKALEDGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A  +KL
Sbjct: 57 PQAANVVKL 65


>gi|261343363|ref|ZP_05971008.1| cold shock domain protein CspD [Providencia rustigianii DSM 4541]
 gi|282568501|gb|EFB74036.1| cold shock domain protein CspD [Providencia rustigianii DSM 4541]
          Length = 79

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P   ++ G+D+F H S +   G   L  GQ V +  +    
Sbjct: 1  MDTGTVKWFNNAKGFGFICP---SDGGEDIFAHYSCIQMEGYRTLKAGQKVNFSVIIG-P 56

Query: 62 NGKYSAENLKLVP 74
           G ++   + +V 
Sbjct: 57 KGNHANVIIPVVE 69


>gi|126733686|ref|ZP_01749433.1| cold shock protein CspA-related protein, putative [Roseobacter
          sp. CCS2]
 gi|126716552|gb|EBA13416.1| cold shock protein CspA-related protein, putative [Roseobacter
          sp. CCS2]
          Length = 69

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+G      DVF+H SAV  +GL  L + Q V +D  +   
Sbjct: 1  MASGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLKDDQKVNFDI-EAGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESAVNLTL 67


>gi|115358650|ref|YP_775788.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria AMMD]
 gi|170699551|ref|ZP_02890592.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171317033|ref|ZP_02906238.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|172063386|ref|YP_001811037.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|115283938|gb|ABI89454.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
          AMMD]
 gi|170135569|gb|EDT03856.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171097817|gb|EDT42639.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|171995903|gb|ACB66821.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MC40-6]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+     GDD+F H S +   G   L EGQ V+Y+  +   
Sbjct: 1  MDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSYEVKRGPK 57

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 58 G--LQASNIT 65


>gi|257880622|ref|ZP_05660275.1| cold shock protein CspC [Enterococcus faecium 1,230,933]
 gi|257883616|ref|ZP_05663269.1| cold shock protein CspC [Enterococcus faecium 1,231,502]
 gi|261209714|ref|ZP_05924033.1| cold shock protein CspC [Enterococcus faecium TC 6]
 gi|289567769|ref|ZP_06448041.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
 gi|293556143|ref|ZP_06674737.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293556264|ref|ZP_06674851.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293568900|ref|ZP_06680213.1| cold-shock protein [Enterococcus faecium E1071]
 gi|293572638|ref|ZP_06683609.1| cold-shock protein [Enterococcus faecium E980]
 gi|294615448|ref|ZP_06695318.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294615452|ref|ZP_06695321.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294623464|ref|ZP_06702315.1| cold shock protein [Enterococcus faecium U0317]
 gi|257814850|gb|EEV43608.1| cold shock protein CspC [Enterococcus faecium 1,230,933]
 gi|257819274|gb|EEV46602.1| cold shock protein CspC [Enterococcus faecium 1,231,502]
 gi|260076316|gb|EEW64124.1| cold shock protein CspC [Enterococcus faecium TC 6]
 gi|289160436|gb|EFD08464.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF]
 gi|291588333|gb|EFF20168.1| cold-shock protein [Enterococcus faecium E1071]
 gi|291591688|gb|EFF23328.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291591694|gb|EFF23333.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291597125|gb|EFF28325.1| cold shock protein [Enterococcus faecium U0317]
 gi|291601573|gb|EFF31838.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291601684|gb|EFF31942.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291607335|gb|EFF36686.1| cold-shock protein [Enterococcus faecium E980]
          Length = 65

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+   G  +L EGQ VTYD  +   
Sbjct: 1  MNNGTVKWFNSDKGFGFIT----GEDGNDVFAHFSAIQGEGFKSLDEGQAVTYDIEEGQ- 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGPQAVNIVK 65


>gi|268590196|ref|ZP_06124417.1| cold shock domain protein CspD [Providencia rettgeri DSM 1131]
 gi|291314477|gb|EFE54930.1| cold shock domain protein CspD [Providencia rettgeri DSM 1131]
          Length = 81

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P    + G+D+F H S +   G   L  GQ V +       
Sbjct: 1  METGIVKWFNNAKGFGFICP---ADGGEDIFAHYSCIQMDGYRTLKAGQKVQFSVTIGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|125560025|gb|EAZ05473.1| hypothetical protein OsI_27689 [Oryza sativa Indica Group]
          Length = 193

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KG+GFITP+   + G+D+F+H+S++ S G  +L +G +V +    +  +G
Sbjct: 7  KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVG-SGNDG 62

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 63 RTKAVDVT 70


>gi|238782952|ref|ZP_04626980.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
 gi|238716155|gb|EEQ08139.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
          Length = 70

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLEEGQNVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVVAL 70


>gi|239618424|ref|YP_002941746.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
          19.5.1]
 gi|239507255|gb|ACR80742.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
          19.5.1]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFIT +     G DVF+H SA+   G   L EGQ V ++  +     
Sbjct: 2  TGTVKWFNSSKGYGFITKD----EGGDVFVHFSAIEVDGFKTLDEGQRVEFEIGEGPKG- 56

Query: 64 KYSAENLKLV 73
             A N+K +
Sbjct: 57 -PQAINVKPI 65


>gi|239827200|ref|YP_002949824.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70]
 gi|239807493|gb|ACS24558.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G +KW+N +KGYGFI      + G+DVF+H +A+   G   L EGQ V +D + +  
Sbjct: 1  MNKGKVKWFNAEKGYGFIE----MDGGNDVFVHFTAIQGEGFKTLEEGQTVMFDII-DGN 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|148557537|ref|YP_001265119.1| cold-shock DNA-binding protein family protein [Sphingomonas
          wittichii RW1]
 gi|148502727|gb|ABQ70981.1| cold-shock DNA-binding protein family [Sphingomonas wittichii
          RW1]
          Length = 68

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKGYGFI PE   E GDD F+H SAV  AG+  L + Q ++Y+ V+ D 
Sbjct: 1  MPIGTVKFFNADKGYGFIAPE---EGGDDSFVHISAVERAGMATLNKDQRISYE-VETDR 56

Query: 62 NGKYSAENLKLV 73
           GK SA NL+ V
Sbjct: 57 RGKSSAVNLQAV 68


>gi|325263633|ref|ZP_08130367.1| conserved domain protein [Clostridium sp. D5]
 gi|324031342|gb|EGB92623.1| conserved domain protein [Clostridium sp. D5]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KG+GFIT   +   G+DVF+H S +A  G   L +GQ VT+D  Q + 
Sbjct: 1  MNNGTVKWFNAQKGFGFIT---NAADGEDVFVHFSGLAMDGFKTLEDGQNVTFDITQGNR 57

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 58 G--LQAVNV 64


>gi|320323059|gb|EFW79148.1| cold-shock protein [Pseudomonas syringae pv. glycinea str. B076]
          Length = 120

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 53  TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 107

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 108 LQAEDVIAALPR 119


>gi|254420854|ref|ZP_05034578.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
          BAL3]
 gi|196187031|gb|EDX82007.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp.
          BAL3]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP KGYGFI P+     G DVF+H +AV  AGL  L E   V Y+    + 
Sbjct: 1  MATGTVKWFNPTKGYGFIQPDS---GGSDVFVHVTAVQKAGLQGLDENAKVEYEL--ENQ 55

Query: 62 NGKYSAENLKLV 73
           GK SA +LKL+
Sbjct: 56 RGKTSAIDLKLL 67


>gi|163816662|ref|ZP_02208025.1| hypothetical protein COPEUT_02852 [Coprococcus eutactus ATCC
          27759]
 gi|158447919|gb|EDP24914.1| hypothetical protein COPEUT_02852 [Coprococcus eutactus ATCC
          27759]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI      E G DVF+H SA+   G   L EG  V Y+ V +  
Sbjct: 1  MKTGKVKWFNAKKGYGFIC----DEDGTDVFVHFSALNMEGFKALEEGDTVEYEVV-DGE 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 KGPQAANVTKL 66


>gi|149242121|pdb|2I5M|X Chain X, Crystal Structure Of Bacillus Subtilis Cold Shock
          Protein Cspb Variant A46k S48r
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V ++ V+ + 
Sbjct: 1  MLEGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQKVRFEIVEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVTK 65


>gi|46206172|ref|ZP_00047626.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
          MS-1]
          Length = 69

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE   +   DVF+H SAV  AGL  LTEGQ V+Y    +  
Sbjct: 1  MDTGTVKWFNEQKGYGFIQPE---DGSKDVFVHISAVERAGLRGLTEGQKVSYVMETDRR 57

Query: 62 NGKYSAENLKL 72
          +GK S   L++
Sbjct: 58 SGKQSGGKLQV 68


>gi|229076838|ref|ZP_04209743.1| Cold shock protein 2 [Bacillus cereus Rock4-18]
 gi|228706282|gb|EEL58550.1| Cold shock protein 2 [Bacillus cereus Rock4-18]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N DKG+GFI        G DVF+H SA+   G  +L EGQ VT++  Q   
Sbjct: 1  MEQGKVKWFNADKGFGFIE----RADGADVFVHFSAIQIDGYKSLDEGQSVTFEVEQGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--LQATNVQ 64


>gi|118616248|ref|YP_904580.1| cold shock protein a, CspA [Mycobacterium ulcerans Agy99]
 gi|118568358|gb|ABL03109.1| cold shock protein a, CspA [Mycobacterium ulcerans Agy99]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFITP+   +   D+F+H S +  +G  +L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNGEKGFGFITPD---DGTKDLFVHYSEIQCSGYRSLEENQRVQFEVEQGTK 57

Query: 62 NGKYSAENLKLV 73
               A  +  V
Sbjct: 58 G--PQAVGVSAV 67


>gi|229505263|ref|ZP_04394773.1| cold shock protein CspD [Vibrio cholerae BX 330286]
 gi|229511067|ref|ZP_04400546.1| cold shock protein CspD [Vibrio cholerae B33]
 gi|229515525|ref|ZP_04404984.1| cold shock protein CspD [Vibrio cholerae TMA 21]
 gi|229518187|ref|ZP_04407631.1| cold shock protein CspD [Vibrio cholerae RC9]
 gi|229520428|ref|ZP_04409853.1| cold shock protein CspD [Vibrio cholerae TM 11079-80]
 gi|229525753|ref|ZP_04415158.1| cold shock protein CspD [Vibrio cholerae bv. albensis VL426]
 gi|229529769|ref|ZP_04419159.1| cold shock protein CspD [Vibrio cholerae 12129(1)]
 gi|229608282|ref|YP_002878930.1| cold shock protein CspD [Vibrio cholerae MJ-1236]
 gi|255745554|ref|ZP_05419502.1| cold shock protein CspD [Vibrio cholera CIRS 101]
 gi|262158372|ref|ZP_06029488.1| cold shock protein CspD [Vibrio cholerae INDRE 91/1]
 gi|262170184|ref|ZP_06037872.1| cold shock protein CspD [Vibrio cholerae RC27]
 gi|229333543|gb|EEN99029.1| cold shock protein CspD [Vibrio cholerae 12129(1)]
 gi|229339334|gb|EEO04351.1| cold shock protein CspD [Vibrio cholerae bv. albensis VL426]
 gi|229342526|gb|EEO07519.1| cold shock protein CspD [Vibrio cholerae TM 11079-80]
 gi|229344902|gb|EEO09876.1| cold shock protein CspD [Vibrio cholerae RC9]
 gi|229347294|gb|EEO12254.1| cold shock protein CspD [Vibrio cholerae TMA 21]
 gi|229351032|gb|EEO15973.1| cold shock protein CspD [Vibrio cholerae B33]
 gi|229357486|gb|EEO22403.1| cold shock protein CspD [Vibrio cholerae BX 330286]
 gi|229370937|gb|ACQ61360.1| cold shock protein CspD [Vibrio cholerae MJ-1236]
 gi|255736629|gb|EET92026.1| cold shock protein CspD [Vibrio cholera CIRS 101]
 gi|262021353|gb|EEY40066.1| cold shock protein CspD [Vibrio cholerae RC27]
 gi|262029813|gb|EEY48461.1| cold shock protein CspD [Vibrio cholerae INDRE 91/1]
 gi|327483846|gb|AEA78253.1| Cold shock protein CspD [Vibrio cholerae LMA3894-4]
          Length = 73

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      D+F H S +   G   L  GQ V+Y   Q   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMDGYRTLKAGQQVSYQVEQG-P 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G +++  + +  +S+ 
Sbjct: 57 KGYHASCVVPIEGQSAK 73


>gi|94984745|ref|YP_604109.1| cold-shock DNA-binding domain-containing protein [Deinococcus
          geothermalis DSM 11300]
 gi|94555026|gb|ABF44940.1| cold-shock DNA-binding domain protein [Deinococcus geothermalis
          DSM 11300]
          Length = 87

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI     TE  +DVF H SA+ + G   L EG  V ++      
Sbjct: 1  MAVGKVKWFNAEKGYGFIE----TEGSEDVFAHFSAIQAQGFKKLNEGDEVEFEIEPGQR 56

Query: 62 NGKYSAENLKLVPKS 76
               A N+ +   +
Sbjct: 57 GKGPQARNIVVTKAA 71


>gi|294498468|ref|YP_003562168.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295703813|ref|YP_003596888.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294348405|gb|ADE68734.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294801472|gb|ADF38538.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N DKG+GFI  E     G+DVF+H SA+   G  +L EGQ VT+D  Q   
Sbjct: 1  MEHGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQGEGFKSLDEGQEVTFDIEQGQR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--PQATNV 63


>gi|302382206|ref|YP_003818029.1| cold-shock DNA-binding domain protein [Brevundimonas
          subvibrioides ATCC 15264]
 gi|302192834|gb|ADL00406.1| cold-shock DNA-binding domain protein [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP KG+GFI P+     G DVF+H +AV  AGL  L E   V Y+      
Sbjct: 1  MATGTVKWFNPTKGFGFIQPDS---GGADVFVHITAVQKAGLTGLDENAKVEYEL--ESQ 55

Query: 62 NGKYSAENLKLV 73
           GK SA +LK++
Sbjct: 56 RGKTSAIDLKVL 67


>gi|229100140|ref|ZP_04231042.1| hypothetical protein bcere0020_53410 [Bacillus cereus Rock3-29]
 gi|229106964|ref|ZP_04237064.1| hypothetical protein bcere0019_56300 [Bacillus cereus Rock3-28]
 gi|229176343|ref|ZP_04303799.1| hypothetical protein bcere0006_53830 [Bacillus cereus MM3]
 gi|228607130|gb|EEK64496.1| hypothetical protein bcere0006_53830 [Bacillus cereus MM3]
 gi|228676519|gb|EEL31265.1| hypothetical protein bcere0019_56300 [Bacillus cereus Rock3-28]
 gi|228683275|gb|EEL37251.1| hypothetical protein bcere0020_53410 [Bacillus cereus Rock3-29]
          Length = 66

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N DKG+GFI      + G+DVF+H SA+   G  +L EGQ VT++  Q   
Sbjct: 1  MEQGKVKWFNADKGFGFIE----RQGGEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--LQATNVQ 64


>gi|94971209|ref|YP_593257.1| cold-shock DNA-binding protein family protein [Candidatus
          Koribacter versatilis Ellin345]
 gi|94553259|gb|ABF43183.1| cold-shock DNA-binding protein family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  KGYGFI       +G+DVF+H SA+   G   L EG+ V +D ++  
Sbjct: 1  MREKGTVKWFNGAKGYGFIQ----RSTGEDVFVHFSAIQENGYRTLNEGETVEFDLLKG- 55

Query: 61 ANGKYSAENLK 71
            G  +A  ++
Sbjct: 56 PKGFQAANVVR 66


>gi|330719414|ref|ZP_08314014.1| cold shock protein [Leuconostoc fallax KCTC 3537]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N +KGYGFIT E    +G+DVF H SA+   G   L EGQ V+++ V++ 
Sbjct: 1  MSEQGTVKWFNGEKGYGFITRE----NGEDVFAHFSAIQGDGFKTLEEGQSVSFE-VESS 55

Query: 61 ANGKYSAENLK 71
            G  +   +K
Sbjct: 56 DRGLQATNIVK 66


>gi|227502480|ref|ZP_03932529.1| cold shock protein [Corynebacterium accolens ATCC 49725]
 gi|306835053|ref|ZP_07468097.1| cold shock protein CspA [Corynebacterium accolens ATCC 49726]
 gi|227076849|gb|EEI14812.1| cold shock protein [Corynebacterium accolens ATCC 49725]
 gi|304569064|gb|EFM44585.1| cold shock protein CspA [Corynebacterium accolens ATCC 49726]
          Length = 67

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  E   + G D+F+H S +  +G   L E Q V+++      
Sbjct: 1  MTQGTVKWFNSEKGYGFIERE---DGGGDIFVHYSEIQGSGFRTLEENQKVSFEVGSGPK 57

Query: 62 NGKYSAENL 70
            +  A ++
Sbjct: 58 GDQAQAVSI 66


>gi|54308343|ref|YP_129363.1| putative cold shock-like protein CspD [Photobacterium profundum
          SS9]
 gi|46912771|emb|CAG19561.1| putative cold shock-like protein CspD [Photobacterium profundum
          SS9]
          Length = 73

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   E   D+F H S +   G   L  GQ V Y+  Q   
Sbjct: 1  MATGTVKWFNNAKGFGFICPE---EGEGDIFAHYSTIQMDGYRTLKAGQQVNYEI-QTGP 56

Query: 62 NGKYSAENLKL 72
           G +++E + +
Sbjct: 57 KGHHASEIVPV 67


>gi|54309148|ref|YP_130168.1| putative cold shock-like protein cspG [Photobacterium profundum
          SS9]
 gi|46913580|emb|CAG20366.1| Putative cold shock-like protein cspG [Photobacterium profundum
          SS9]
          Length = 82

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ V+Y+  Q     
Sbjct: 18 TGTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLAEGQKVSYETEQGPKG- 73

Query: 64 KYSAENLKLV 73
             A N++ +
Sbjct: 74 -LQAANVEAI 82


>gi|308186235|ref|YP_003930366.1| Cold shock-like protein cspD [Pantoea vagans C9-1]
 gi|308056745|gb|ADO08917.1| Cold shock-like protein cspD [Pantoea vagans C9-1]
          Length = 73

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G    GDD+F H S +   G   L  GQ V +D  +   
Sbjct: 1  METGTVKWFNNSKGFGFICPVG---GGDDIFAHYSTIQMEGYRTLKAGQQVQFDVHEGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|15800910|ref|NP_286926.1| cold shock protein CspG [Escherichia coli O157:H7 EDL933]
 gi|25296143|pir||E85634 homolog of Salmonella cold shock protein [imported] - Escherichia
          coli (strain O157:H7, substrain EDL933)
 gi|12514257|gb|AAG55537.1|AE005293_1 homolog of Salmonella cold shock protein [Escherichia coli
          O157:H7 str. EDL933]
          Length = 70

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H +A+ S     L E Q V +   Q    G
Sbjct: 6  TGLVKWFNADKGFGFITPD---DGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQ-RG 61

Query: 64 KYSAENLK 71
            +A  + 
Sbjct: 62 PAAANVVT 69


>gi|90413211|ref|ZP_01221206.1| putative cold shock-like protein CspD [Photobacterium profundum
          3TCK]
 gi|90325763|gb|EAS42221.1| putative cold shock-like protein CspD [Photobacterium profundum
          3TCK]
          Length = 73

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   E   D+F H S +   G   L  GQ V Y+  Q   
Sbjct: 1  MATGTVKWFNNAKGFGFICPE---EGEGDIFAHYSTIQMDGYRTLKAGQQVNYEI-QTGP 56

Query: 62 NGKYSAENLKL 72
           G +++E + +
Sbjct: 57 KGHHASEIIPV 67


>gi|150377277|ref|YP_001313872.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|150031824|gb|ABR63939.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
          Length = 69

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ ++ EGQ + ++  +++ 
Sbjct: 1  MTTGTVKWFNSTKGFGFIQPD---DGSADVFVHISAVERAGMNSIVEGQKLGFELERDNK 57

Query: 62 NGKYSAENLK 71
          +GK SA  L+
Sbjct: 58 SGKMSAGQLR 67


>gi|326383466|ref|ZP_08205153.1| cold shock protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326197872|gb|EGD55059.1| cold shock protein [Gordonia neofelifaecis NRRL B-59395]
          Length = 67

 Score = 98.5 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+   +   DVF+H S +   G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAPD---DGDADVFVHYSEIQGNGFRTLEEDQRVEFEVGQGTK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|296141549|ref|YP_003648792.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
          DSM 20162]
 gi|296029683|gb|ADG80453.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
          DSM 20162]
          Length = 67

 Score = 98.5 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P    +  DDVF+H S +   G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAP---ADGSDDVFVHYSEIQGNGFRTLEENQQVEFEVGQGTK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|291166639|gb|EFE28685.1| hypothetical protein HMPREF0389_00602 [Filifactor alocis ATCC
          35896]
          Length = 66

 Score = 98.5 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI+ EG     +DVF+H SA+ + G   L EGQ V ++ V + A
Sbjct: 1  MKQGKVKWFNAEKGFGFISVEGE----NDVFVHFSAIQTEGFKTLEEGQDVEFEIV-DGA 55

Query: 62 NGKYSAENLKL 72
           G  ++   KL
Sbjct: 56 RGPQASNVTKL 66


>gi|116626278|ref|YP_828434.1| cold-shock DNA-binding protein family protein [Candidatus
          Solibacter usitatus Ellin6076]
 gi|116229440|gb|ABJ88149.1| cold-shock DNA-binding protein family [Candidatus Solibacter
          usitatus Ellin6076]
          Length = 67

 Score = 98.5 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  KGYGFI  E    +G+DVF+H SA+ + G   L EG  V ++  +  
Sbjct: 1  MKEKGTVKWFNAAKGYGFIQRE----NGEDVFVHFSAIQTEGYRTLDEGSSVEFEVTKGP 56

Query: 61 ANGKYSAENLK 71
                A N+ 
Sbjct: 57 KG--LQATNVT 65


>gi|182434255|ref|YP_001821974.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|239946053|ref|ZP_04697990.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|239992524|ref|ZP_04713188.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
 gi|291449502|ref|ZP_06588892.1| cold shock protein scoF [Streptomyces roseosporus NRRL 15998]
 gi|326774768|ref|ZP_08234033.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178462771|dbj|BAG17291.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|291352449|gb|EFE79353.1| cold shock protein scoF [Streptomyces roseosporus NRRL 15998]
 gi|326655101|gb|EGE39947.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 67

 Score = 98.5 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S + S G   L EGQ VT+D  Q   
Sbjct: 1  MASGTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNINSTGFRELQEGQAVTFDITQGQK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENIT 65


>gi|260769456|ref|ZP_05878389.1| cold shock protein CspE [Vibrio furnissii CIP 102972]
 gi|260614794|gb|EEX39980.1| cold shock protein CspE [Vibrio furnissii CIP 102972]
 gi|315181988|gb|ADT88901.1| cold shock DNA-binding domain-containing protein [Vibrio
          furnissii NCTC 11218]
          Length = 69

 Score = 98.5 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNETKGFGFI----KQENGPDVFAHFSAIQGDGFRTLAEGQKVEFVITQGQKG- 60

Query: 64 KYSAENLKLV 73
             AE++KL+
Sbjct: 61 -PQAESIKLL 69


>gi|217076694|ref|YP_002334410.1| hypothetical protein THA_582 [Thermosipho africanus TCF52B]
 gi|217036547|gb|ACJ75069.1| conserved domain protein [Thermosipho africanus TCF52B]
          Length = 65

 Score = 98.5 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KGYGFIT     E G+D+F+H SA+ + G   L EGQ V +D VQ+   G
Sbjct: 2  KGTVKWFDAKKGYGFIT----KEDGEDIFVHWSAIQTDGFKTLKEGQEVEFD-VQDGQKG 56

Query: 64 KYSAENLKLV 73
            +A N+K +
Sbjct: 57 PQAA-NVKPL 65


>gi|146309868|ref|YP_001174942.1| cold-shock DNA-binding protein family protein [Enterobacter sp.
          638]
 gi|145316744|gb|ABP58891.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
          Length = 70

 Score = 98.5 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+NP+KG+GFITP    +   DVF+H SA+ S+    L EGQ V +   +N A G
Sbjct: 6  TGLVKWFNPEKGFGFITP---QDGSKDVFVHFSAIQSSDFKTLDEGQKVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVIAL 70


>gi|29827434|ref|NP_822068.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29604533|dbj|BAC68603.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 67

 Score = 98.5 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +AS+G   L EGQ V +D  Q   
Sbjct: 1  MASGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIASSGFRELQEGQKVNFDVTQGQK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENIT 65


>gi|21219062|ref|NP_624841.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|256789924|ref|ZP_05528355.1| cold shock protein [Streptomyces lividans TK24]
 gi|289773805|ref|ZP_06533183.1| cold shock protein scoF [Streptomyces lividans TK24]
 gi|1345847|sp|P48859|CSPF_STRCO RecName: Full=Cold shock protein ScoF
 gi|1067201|emb|CAA63367.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|6137029|emb|CAB59584.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|117164740|emb|CAJ88288.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|289704004|gb|EFD71433.1| cold shock protein scoF [Streptomyces lividans TK24]
          Length = 67

 Score = 98.5 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S + + G   L EGQ VT+D  Q   
Sbjct: 1  MASGTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNINAQGYRELQEGQAVTFDITQGQK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENIT 65


>gi|231915|sp|Q01761|CSP7_STRCL RecName: Full=Cold shock-like protein 7.0
 gi|46789|emb|CAA48316.1| 7 kDa cold shock like protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 66

 Score = 98.5 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF+H SA+ + G  +L E Q+V +D    + 
Sbjct: 1  MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINATGFRSLEENQVVNFDVTHGEG 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 ---PQAENVS 64


>gi|326204316|ref|ZP_08194175.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
          DSM 2782]
 gi|325985591|gb|EGD46428.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens
          DSM 2782]
          Length = 66

 Score = 98.5 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  +     G+DVF+H SA+   G   L EG  V +D V+  A
Sbjct: 1  MEKGRVKWFNAEKGFGFIERD----GGNDVFVHFSAINMDGYKTLEEGSEVVFDVVEG-A 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 KGPQAANV 63


>gi|329298247|ref|ZP_08255583.1| cold shock-like protein CspD [Plautia stali symbiont]
          Length = 73

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G      D+F H S +   G   L  GQ V +D  +   
Sbjct: 1  METGTVKWFNNTKGFGFICPIGGDN---DIFAHYSTIQMEGYRTLKAGQHVQFDVHEGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|332996322|gb|EGK15949.1| cold shock-like protein cspG [Shigella flexneri VA-6]
          Length = 70

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP+   +   DVF+H SA+ + G  +L EGQ V++   ++ A G
Sbjct: 6  TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNYGYKSLDEGQKVSFTI-ESGAKG 61

Query: 64 KYSAENLK 71
            +A N+ 
Sbjct: 62 P-AAGNVT 68


>gi|332685716|ref|YP_004455490.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311]
 gi|332369725|dbj|BAK20681.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311]
          Length = 66

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI+ E     G DVF+H SA+   G   L E Q VT+D  +++ 
Sbjct: 1  MEHGTVKWFNAEKGFGFISRE----DGSDVFVHFSAIQGDGFKTLEEDQPVTFDVEESER 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQAVNVQ 64


>gi|323499460|ref|ZP_08104431.1| cold shock-like protein CspD [Vibrio sinaloensis DSM 21326]
 gi|323315447|gb|EGA68487.1| cold shock-like protein CspD [Vibrio sinaloensis DSM 21326]
          Length = 73

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      DVF H S +   G   L  GQ V ++  +   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGED---GDVFAHYSTIQMDGYRTLKAGQQVNFEVEEGPK 57

Query: 62 NGKYSAENLKLVPKS 76
             Y A  +  V   
Sbjct: 58 G--YHASVVTPVESQ 70


>gi|85860691|ref|YP_462893.1| cold shock protein [Syntrophus aciditrophicus SB]
 gi|85723782|gb|ABC78725.1| cold shock protein [Syntrophus aciditrophicus SB]
          Length = 66

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +     G DVF+H SA+ + G  +L+EG  V++D V    
Sbjct: 1  MPEGTVKWFNDSKGFGFIEQD----GGKDVFVHHSAIQAEGFKSLSEGDRVSFDVVVGKK 56

Query: 62 NGKYSAENLKLV 73
              SAEN++ V
Sbjct: 57 G--PSAENVRKV 66


>gi|119385862|ref|YP_916917.1| cold-shock DNA-binding domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119376457|gb|ABL71221.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
          PD1222]
          Length = 68

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI PE       DVF+H SA+  AG+ +L +GQ + YD  + D 
Sbjct: 1  MANGTVKWFNSNKGFGFIAPET---GSKDVFIHISALERAGIHHLNDGQAIAYDI-ERDR 56

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67


>gi|317129010|ref|YP_004095292.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
 gi|315473958|gb|ADU30561.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus
          DSM 2522]
          Length = 66

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V+++  Q   
Sbjct: 1  MEQGKVKWFNAEKGFGFIEVE----GGDDVFVHFSAINGEGFKTLEEGQDVSFEVEQGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--PQATNVNKL 66


>gi|134300911|ref|YP_001114407.1| cold-shock DNA-binding domain-containing protein
          [Desulfotomaculum reducens MI-1]
 gi|134053611|gb|ABO51582.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens
          MI-1]
          Length = 65

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KGYGFI  E     G DVF+H SA+   G  +L EGQ V +D V+  A G 
Sbjct: 3  GKVKWFNAEKGYGFIERE----EGGDVFVHFSAIQEEGFKSLAEGQEVEFDIVEG-ARGP 57

Query: 65 YSAENLK 71
           +A   K
Sbjct: 58 QAANVTK 64


>gi|78065067|ref|YP_367836.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
          383]
 gi|107024146|ref|YP_622473.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia AU 1054]
 gi|115350462|ref|YP_772301.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria AMMD]
 gi|116688527|ref|YP_834150.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia HI2424]
 gi|134294597|ref|YP_001118332.1| cold-shock DNA-binding protein family protein [Burkholderia
          vietnamiensis G4]
 gi|170701451|ref|ZP_02892407.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|170731829|ref|YP_001763776.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|171319075|ref|ZP_02908199.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|172059495|ref|YP_001807147.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|206558773|ref|YP_002229533.1| cold shock-like protein CspD [Burkholderia cenocepacia J2315]
 gi|254246471|ref|ZP_04939792.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
 gi|254253382|ref|ZP_04946700.1| Cold-shock protein [Burkholderia dolosa AUO158]
 gi|77965812|gb|ABB07192.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
 gi|105894335|gb|ABF77500.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          AU 1054]
 gi|115280450|gb|ABI85967.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
          AMMD]
 gi|116646616|gb|ABK07257.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          HI2424]
 gi|124871247|gb|EAY62963.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
 gi|124895991|gb|EAY69871.1| Cold-shock protein [Burkholderia dolosa AUO158]
 gi|134137754|gb|ABO53497.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
          G4]
 gi|169815071|gb|ACA89654.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          MC0-3]
 gi|170133648|gb|EDT02020.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171095714|gb|EDT40670.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|171992012|gb|ACB62931.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MC40-6]
 gi|198034810|emb|CAR50678.1| cold shock-like protein CspD [Burkholderia cenocepacia J2315]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITPEG    GDD+F H S +   G   L E Q V ++ V+   
Sbjct: 1  MATGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVEGFKTLQENQKVEFE-VKTGP 56

Query: 62 NGKYSAENLKLV 73
           G  +A N++ V
Sbjct: 57 KGLQAA-NIRPV 67


>gi|228992244|ref|ZP_04152177.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
 gi|228998299|ref|ZP_04157894.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|229005782|ref|ZP_04163480.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
 gi|228755458|gb|EEM04805.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
 gi|228761451|gb|EEM10402.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|228767497|gb|EEM16127.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
          Length = 66

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ VT++  Q + 
Sbjct: 1  MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN- 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGPQATNVVK 65


>gi|78062299|ref|YP_372207.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
          383]
 gi|107026255|ref|YP_623766.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia AU 1054]
 gi|116692558|ref|YP_838091.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia HI2424]
 gi|170738189|ref|YP_001779449.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|206563468|ref|YP_002234231.1| putative DNA-binding cold-shock protein [Burkholderia cenocepacia
          J2315]
 gi|77970184|gb|ABB11563.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
 gi|105895629|gb|ABF78793.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          AU 1054]
 gi|116650558|gb|ABK11198.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          HI2424]
 gi|169820377|gb|ACA94959.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          MC0-3]
 gi|198039508|emb|CAR55475.1| putative DNA-binding cold-shock protein [Burkholderia cenocepacia
          J2315]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+     GDD+F H S +   G   L EGQ V+++  +   
Sbjct: 1  MDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSFEVKRGPK 57

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 58 G--LQASNIT 65


>gi|239997241|ref|ZP_04717765.1| putative cold shock-like protein cspG [Alteromonas macleodii ATCC
          27126]
 gi|332142943|ref|YP_004428681.1| putative cold shock-like protein cspG [Alteromonas macleodii str.
          'Deep ecotype']
 gi|332143012|ref|YP_004428750.1| putative cold shock-like protein cspG [Alteromonas macleodii str.
          'Deep ecotype']
 gi|327552965|gb|AEA99683.1| putative cold shock-like protein cspG [Alteromonas macleodii str.
          'Deep ecotype']
 gi|327553034|gb|AEA99752.1| putative cold shock-like protein cspG [Alteromonas macleodii str.
          'Deep ecotype']
          Length = 69

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKGYGF+T +     G DVF+H  A+ S G   L EGQ V ++  +     
Sbjct: 5  TGTVKWFNADKGYGFLTQD---NGGKDVFVHFRAIISDGYKTLPEGQRVEFEVEEGQKG- 60

Query: 64 KYSAENLKLV 73
             A N++ +
Sbjct: 61 -LQAANVQAI 69


>gi|312877876|ref|ZP_07737822.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|311795339|gb|EFR11722.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor
          lactoaceticus 6A]
          Length = 66

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+NP+KGYGFI    S ++G+DVF+H SA+   G   L EGQ+V +D V+ +   
Sbjct: 2  RGRVKWFNPEKGYGFI----SADNGEDVFVHFSAINMEGYKTLAEGQMVEFDIVKTERG- 56

Query: 64 KYSAENLKLVP 74
             A N++ V 
Sbjct: 57 -NQAMNVRKVK 66


>gi|182437305|ref|YP_001825024.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326777925|ref|ZP_08237190.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178465821|dbj|BAG20341.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326658258|gb|EGE43104.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIAASGFRELQEGQKVNFDVTQGQK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENIT 65


>gi|157364579|ref|YP_001471346.1| cold-shock DNA-binding domain-containing protein [Thermotoga
          lettingae TMO]
 gi|157315183|gb|ABV34282.1| putative cold-shock DNA-binding domain protein [Thermotoga
          lettingae TMO]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW++  KGYGFIT     E G+DVF+H SA+ + G   L EGQ V ++  Q + 
Sbjct: 1  MFKGTVKWFDSKKGYGFIT----KEGGEDVFVHFSAIKTDGFKTLREGQEVEFEVQQGNK 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--PQAVNVTPI 66


>gi|169627591|ref|YP_001701240.1| cold shock protein A (CspA) [Mycobacterium abscessus ATCC 19977]
 gi|169239558|emb|CAM60586.1| Probable cold shock protein A (CspA) [Mycobacterium abscessus]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H + +   G   L E Q V ++  Q+  
Sbjct: 1  MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGNGFRTLEENQKVEFEVGQSPK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|73539162|ref|YP_299529.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72122499|gb|AAZ64685.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 83

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G +KW+N  KG+GFI P+     GDD+F H S + S G  +L E Q V+++ V+N 
Sbjct: 16 IMQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEIRSEGFKSLQENQRVSFE-VKNG 71

Query: 61 ANGKYSAE 68
            G  +A 
Sbjct: 72 PKGLQAAN 79


>gi|95929679|ref|ZP_01312421.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
 gi|95134376|gb|EAT16033.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
          Length = 66

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  GS+KW+N  KG+GFI  +    +G DVF+H SA+   G  +L EG  V++D   +  
Sbjct: 1  MAEGSVKWFNDSKGFGFIEQD----NGPDVFVHFSAIQGDGFKSLAEGDRVSFDVT-DGQ 55

Query: 62 NGKYSAENLKL 72
           G  SA   ++
Sbjct: 56 KGPQSANVRRI 66


>gi|120402055|ref|YP_951884.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          vanbaalenii PYR-1]
 gi|119954873|gb|ABM11878.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI P+G      DVF+H S ++  G  +L E Q V ++  Q + 
Sbjct: 1  MAQGTVKWFNGDKGFGFIAPDG---GAPDVFVHYSEISGNGYRSLEENQRVEFEVEQGNK 57

Query: 62 NGKYSAENLKLV 73
               A  +  V
Sbjct: 58 G--PQAVRVTAV 67


>gi|163939506|ref|YP_001644390.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229011015|ref|ZP_04168209.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048]
 gi|229058330|ref|ZP_04196715.1| Cold shock-like protein cspB [Bacillus cereus AH603]
 gi|229132514|ref|ZP_04261364.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196]
 gi|229166538|ref|ZP_04294291.1| Cold shock-like protein cspB [Bacillus cereus AH621]
 gi|163861703|gb|ABY42762.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
 gi|228616942|gb|EEK74014.1| Cold shock-like protein cspB [Bacillus cereus AH621]
 gi|228650951|gb|EEL06936.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196]
 gi|228720004|gb|EEL71593.1| Cold shock-like protein cspB [Bacillus cereus AH603]
 gi|228750187|gb|EEM00019.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048]
          Length = 65

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  +DVF+H SA+ S G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIE----MEGSEDVFVHFSAIQSDGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 57 PQAANVAKL 65


>gi|148546481|ref|YP_001266583.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
           putida F1]
 gi|148510539|gb|ABQ77399.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
          Length = 197

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  +  D   
Sbjct: 131 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 185

Query: 64  KYSAENLKLV 73
              AE++  V
Sbjct: 186 -LQAEDVVAV 194


>gi|260777147|ref|ZP_05886041.1| cold shock protein CspE [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606813|gb|EEX33087.1| cold shock protein CspE [Vibrio coralliilyticus ATCC BAA-450]
          Length = 69

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H SA+   G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAITGDGFRTLVEGQKVEFTVSQGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+KLV
Sbjct: 61 -PQAENIKLV 69


>gi|269793598|ref|YP_003313053.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
          10542]
 gi|269095783|gb|ACZ20219.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
          10542]
          Length = 62

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N +KG+GFI PE   +   DVF H SA+AS+G  +L E Q V +D  Q        
Sbjct: 1  MKWFNAEKGFGFIAPE---DGSADVFAHYSAIASSGYRSLDENQKVEFDVTQGPKG--PQ 55

Query: 67 AENLKLV 73
          AEN++ +
Sbjct: 56 AENIRPL 62


>gi|251789968|ref|YP_003004689.1| cold-shock DNA-binding domain-containing protein [Dickeya zeae
          Ech1591]
 gi|271500838|ref|YP_003333863.1| cold-shock DNA-binding domain-containing protein [Dickeya
          dadantii Ech586]
 gi|307130778|ref|YP_003882794.1| cold shock protein [Dickeya dadantii 3937]
 gi|247538589|gb|ACT07210.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591]
 gi|270344393|gb|ACZ77158.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586]
 gi|306528307|gb|ADM98237.1| cold shock protein [Dickeya dadantii 3937]
          Length = 73

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G+D+F H S +   G   L  GQ+V +   Q   
Sbjct: 1  METGTVKWFNNAKGFGFICPES---GGEDIFAHYSTIQMDGYRTLKAGQVVQFTVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|157375023|ref|YP_001473623.1| cold-shock DNA-binding domain-containing protein [Shewanella
          sediminis HAW-EB3]
 gi|170727046|ref|YP_001761072.1| cold-shock DNA-binding domain-containing protein [Shewanella
          woodyi ATCC 51908]
 gi|157317397|gb|ABV36495.1| cold-shock DNA-binding domain protein [Shewanella sediminis
          HAW-EB3]
 gi|169812393|gb|ACA86977.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
          51908]
          Length = 68

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G+DVF H S +   G   L  GQ V ++      
Sbjct: 1  MANGTVKWFNNAKGFGFICPEA---GGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEAGPK 57

Query: 62 NGKYSA 67
              SA
Sbjct: 58 GMHASA 63


>gi|226330749|ref|ZP_03806267.1| hypothetical protein PROPEN_04669 [Proteus penneri ATCC 35198]
 gi|225201544|gb|EEG83898.1| hypothetical protein PROPEN_04669 [Proteus penneri ATCC 35198]
          Length = 69

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITPE   + G+D+F H S +   G   L  GQ V Y  ++   
Sbjct: 1  METGTVKWFNNAKGFGFITPE---KGGEDIFAHYSTIRMEGYRTLKAGQKVNYSTIKGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|56707866|ref|YP_169762.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU
          S4]
 gi|110670337|ref|YP_666894.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC198]
 gi|115315074|ref|YP_763797.1| cold shock protein [Francisella tularensis subsp. holarctica
          OSU18]
 gi|134301709|ref|YP_001121677.1| cold shock DNA-binding domain-containing protein [Francisella
          tularensis subsp. tularensis WY96-3418]
 gi|187931528|ref|YP_001891512.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|224456944|ref|ZP_03665417.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|254369526|ref|ZP_04985537.1| hypothetical protein FTAG_01407 [Francisella tularensis subsp.
          holarctica FSC022]
 gi|254370361|ref|ZP_04986366.1| hypothetical protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254874681|ref|ZP_05247391.1| cold shock protein [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|54113247|gb|AAV29257.1| NT02FT0936 [synthetic construct]
 gi|56604358|emb|CAG45384.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU
          S4]
 gi|110320670|emb|CAL08767.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC198]
 gi|115129973|gb|ABI83160.1| cold shock protein [Francisella tularensis subsp. holarctica
          OSU18]
 gi|134049486|gb|ABO46557.1| cold shock DNA-binding domain protein [Francisella tularensis
          subsp. tularensis WY96-3418]
 gi|151568604|gb|EDN34258.1| hypothetical protein FTBG_00121 [Francisella tularensis subsp.
          tularensis FSC033]
 gi|157122480|gb|EDO66615.1| hypothetical protein FTAG_01407 [Francisella tularensis subsp.
          holarctica FSC022]
 gi|187712437|gb|ACD30734.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|254840680|gb|EET19116.1| cold shock protein [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|282159046|gb|ADA78437.1| cold shock DNA-binding domain protein [Francisella tularensis
          subsp. tularensis NE061598]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFI P    + G DVF+H SAV +AGL +L EG+ V+++  +N  
Sbjct: 1  MRQGTVKFFNTSKGFGFIEP---QDGGKDVFVHISAVENAGLSSLREGEKVSFEVEEN-- 55

Query: 62 NGKYSAENLK 71
           GK +A N+K
Sbjct: 56 RGKMAAVNIK 65


>gi|317493065|ref|ZP_07951489.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919187|gb|EFV40522.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 70

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP+       D+F+H SA+ S     L EGQ V +  V+N   G
Sbjct: 6  TGLVKWFDAGKGFGFITPD---NGSKDIFVHFSAIQSTAFKTLDEGQRVEF-TVENGQKG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PSAANVVAL 70


>gi|313497560|gb|ADR58926.1| Cold-shock DNA-binding domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 197

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  +  D   
Sbjct: 131 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 185

Query: 64  KYSAENLKLV 73
              AE++  V
Sbjct: 186 -LQAEDVVAV 194


>gi|29376512|ref|NP_815666.1| cold shock protein CspC [Enterococcus faecalis V583]
 gi|255972368|ref|ZP_05422954.1| cold-shock protein [Enterococcus faecalis T1]
 gi|256619465|ref|ZP_05476311.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
 gi|256853505|ref|ZP_05558875.1| cold shock protein CspC [Enterococcus faecalis T8]
 gi|256959303|ref|ZP_05563474.1| cold-shock protein [Enterococcus faecalis DS5]
 gi|256964738|ref|ZP_05568909.1| cold-shock protein [Enterococcus faecalis HIP11704]
 gi|257079369|ref|ZP_05573730.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|257087195|ref|ZP_05581556.1| cold-shock protein [Enterococcus faecalis D6]
 gi|257090271|ref|ZP_05584632.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257422222|ref|ZP_05599212.1| cold shock protein [Enterococcus faecalis X98]
 gi|300860380|ref|ZP_07106467.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
 gi|29343976|gb|AAO81736.1| cold shock protein CspC [Enterococcus faecalis V583]
 gi|255963386|gb|EET95862.1| cold-shock protein [Enterococcus faecalis T1]
 gi|256598992|gb|EEU18168.1| cold-shock protein [Enterococcus faecalis ATCC 4200]
 gi|256711964|gb|EEU27002.1| cold shock protein CspC [Enterococcus faecalis T8]
 gi|256949799|gb|EEU66431.1| cold-shock protein [Enterococcus faecalis DS5]
 gi|256955234|gb|EEU71866.1| cold-shock protein [Enterococcus faecalis HIP11704]
 gi|256987399|gb|EEU74701.1| cold-shock protein [Enterococcus faecalis JH1]
 gi|256995225|gb|EEU82527.1| cold-shock protein [Enterococcus faecalis D6]
 gi|256999083|gb|EEU85603.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257164046|gb|EEU94006.1| cold shock protein [Enterococcus faecalis X98]
 gi|300849419|gb|EFK77169.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11]
 gi|323481125|gb|ADX80564.1| cold shock protein cspC [Enterococcus faecalis 62]
 gi|329568749|gb|EGG50549.1| major cold shock protein CspA [Enterococcus faecalis TX1467]
          Length = 66

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+ + G  +L EGQ VT+D  +   
Sbjct: 1  MNNGTVKWFNSDKGFGFIT----GEDGNDVFAHFSAIQADGFKSLEEGQAVTFDIEEGQR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--MQAVNI 63


>gi|148265690|ref|YP_001232396.1| cold-shock DNA-binding domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146399190|gb|ABQ27823.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
          Rf4]
          Length = 66

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  E    +G+DVF+H S++   G  +L EGQ VT+D VQ  A
Sbjct: 1  MANGVVKWFNDSKGFGFIEQE----NGEDVFVHFSSIQGDGFKSLAEGQAVTFDIVQG-A 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 KGPQAANVYK 65


>gi|310659567|ref|YP_003937288.1| DNA-binding transcriptional repressor [Clostridium sticklandii
          DSM 519]
 gi|308826345|emb|CBH22383.1| DNA-binding transcriptional repressor [Clostridium sticklandii]
          Length = 65

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ V ++  Q +  G 
Sbjct: 3  GKVKWFNAEKGFGFIERE----DGDDVFVHFSAIQGDGFKTLEEGQTVEFEITQGN-RGP 57

Query: 65 YSAENLK 71
           ++  ++
Sbjct: 58 QASNVVR 64


>gi|303242124|ref|ZP_07328614.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
          CD2]
 gi|302590311|gb|EFL60069.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
          CD2]
          Length = 66

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N +KG+GFI  +     G+DVF+H SA+   G   L EG  V ++ V+  A
Sbjct: 1  MERGRVKWFNAEKGFGFIERD----GGNDVFVHFSAINMDGYKTLEEGTEVQFEVVEG-A 55

Query: 62 NGKYSAENLK 71
           G  ++   +
Sbjct: 56 KGPQASNVTR 65


>gi|163751227|ref|ZP_02158455.1| stress response protein CspD [Shewanella benthica KT99]
 gi|294140596|ref|YP_003556574.1| stress response protein CspD [Shewanella violacea DSS12]
 gi|161328941|gb|EDQ00015.1| stress response protein CspD [Shewanella benthica KT99]
 gi|293327065|dbj|BAJ01796.1| stress response protein CspD [Shewanella violacea DSS12]
          Length = 68

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G+DVF H S +   G   L  GQ V ++ V+   
Sbjct: 1  MANGTVKWFNNAKGFGFICPDA---GGEDVFAHYSTIEMEGYRTLKAGQPVQFE-VEAGP 56

Query: 62 NGKYSAE 68
           G +++ 
Sbjct: 57 KGMHASV 63


>gi|163800347|ref|ZP_02194248.1| cold shock DNA-binding domain protein [Vibrio sp. AND4]
 gi|159175790|gb|EDP60584.1| cold shock DNA-binding domain protein [Vibrio sp. AND4]
          Length = 69

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H SA+   G   L EGQ V ++  Q     
Sbjct: 6  TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAIQGDGFKTLAEGQKVEFEVTQGQKG- 60

Query: 64 KYSAENLKLV 73
             AE + ++
Sbjct: 61 -PQAEKITVL 69


>gi|149909599|ref|ZP_01898252.1| cold shock-like protein [Moritella sp. PE36]
 gi|149807303|gb|EDM67256.1| cold shock-like protein [Moritella sp. PE36]
          Length = 73

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     GDDVF H S +   G   L  GQLV Y+  +   
Sbjct: 1  MATGTVKWFNNAKGFGFICPES---GGDDVFAHFSIIQMDGYRTLKAGQLVDYEIDEGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|118470416|ref|YP_884970.1| hypothetical protein MSMEG_0559 [Mycobacterium smegmatis str. MC2
          155]
 gi|118171703|gb|ABK72599.1| conserved domain protein [Mycobacterium smegmatis str. MC2 155]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+G      DVF+H S ++ +G  +L E Q V ++  Q  A
Sbjct: 1  MAQGTVKWFNGEKGFGFIAPDG---GAPDVFVHYSEISGSGFRSLEENQRVEFEITQG-A 56

Query: 62 NGKYSAENLKL 72
           G  +     +
Sbjct: 57 KGPQAVGVTAV 67


>gi|86159596|ref|YP_466381.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|85776107|gb|ABC82944.1| cold-shock DNA-binding protein family [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT +G    G+DVF H +A+ + G  ++ EGQ V +D  +   
Sbjct: 1  MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQAEGFRSVAEGQKVEFDVAKGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--LQAANVRPL 67


>gi|160937355|ref|ZP_02084716.1| hypothetical protein CLOBOL_02246 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439424|gb|EDP17174.1| hypothetical protein CLOBOL_02246 [Clostridium bolteae ATCC
          BAA-613]
          Length = 72

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGFIT E   E+G D+F+H S +AS G  +L EGQ VT+D   +  
Sbjct: 6  MNKGTVKWFNSQKGYGFITNE---ENGMDIFVHFSGIASNGFKSLEEGQAVTFDITNSPR 62

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 63 G--LQAVNV 69


>gi|297160336|gb|ADI10048.1| cold shock protein [Streptomyces bingchenggensis BCW-1]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELHEGQKVSFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|296166503|ref|ZP_06848934.1| cold shock protein Csp [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295898115|gb|EFG77690.1| cold shock protein Csp [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+G      DVF+H S +   G  +L E Q V ++  Q  A
Sbjct: 1  MTQGTVKWFNSEKGFGFIAPDG---GAADVFVHYSEIQGNGYRSLEENQRVEFNVEQG-A 56

Query: 62 NGKYSAENLKL 72
           G  +     +
Sbjct: 57 KGPQAVGVTAV 67


>gi|118592774|ref|ZP_01550163.1| cold shock protein [Stappia aggregata IAM 12614]
 gi|118434544|gb|EAV41196.1| cold shock protein [Stappia aggregata IAM 12614]
          Length = 69

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G D F+H +AV  AG+  + EGQ + YD  ++  
Sbjct: 1  MTTGTVKWFNSSKGFGFIQPD---NGGPDAFVHITAVERAGMHEIVEGQKIGYDMERDTK 57

Query: 62 NGKYSAENLK 71
          +GK SA NL+
Sbjct: 58 SGKMSACNLQ 67


>gi|332526824|ref|ZP_08402924.1| cold-shock DNA-binding protein family protein [Rubrivivax
          benzoatilyticus JA2]
 gi|332111225|gb|EGJ11257.1| cold-shock DNA-binding protein family protein [Rubrivivax
          benzoatilyticus JA2]
          Length = 69

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G++KW+N  KGYGFITP+     G D+F H   +   G   L E Q V ++  Q    
Sbjct: 4  ETGTVKWFNESKGYGFITPDA---GGKDLFAHFKEIQGTGFKTLAENQRVEFEVTQGQKG 60

Query: 63 GKYS 66
           + S
Sbjct: 61 PQAS 64


>gi|159043321|ref|YP_001532115.1| cold-shock DNA-binding domain-containing protein [Dinoroseobacter
          shibae DFL 12]
 gi|157911081|gb|ABV92514.1| cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL
          12]
          Length = 69

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   E G DVF+H SAV  AGL  L +   + Y+  +   
Sbjct: 1  MPTGTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERAGLTGLADNTKIEYEL-REGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA  LK+V
Sbjct: 57 DGRSSATELKVV 68


>gi|192289774|ref|YP_001990379.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
 gi|192283523|gb|ACE99903.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          TIE-1]
          Length = 71

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +LTEGQ ++++   + 
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57

Query: 61 ANGKYSAENLKLVP 74
                A NL + P
Sbjct: 58 KGKGPKAVNLVISP 71


>gi|238797907|ref|ZP_04641398.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
 gi|238718212|gb|EEQ10037.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
          Length = 66

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 2  TGLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLEEGQNVEFSI-ENGAKG 57

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 58 PAAANVVAL 66


>gi|330958172|gb|EGH58432.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 101

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 2  VHRGSIKWYNPDKGYGFIT-------PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G +KW+N  KGYGFI        PE     GDD+F+H S +   G   +  GQ V +
Sbjct: 1  MKEGKVKWFNNAKGYGFINAKVNGKNPEKDEYGGDDLFVHFSTIEMEGYKTIKAGQKVIF 60

Query: 55 DYVQNDANGKYSAENLKLVPKSSN 78
          D ++        A N++ V     
Sbjct: 61 DIIEGPKG--QHAVNIRAVKDDQE 82


>gi|329895883|ref|ZP_08271211.1| Cold shock protein CspE [gamma proteobacterium IMCC3088]
 gi|328922101|gb|EGG29460.1| Cold shock protein CspE [gamma proteobacterium IMCC3088]
          Length = 68

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E     G DVF+H SA+   G   L +GQ V +D        
Sbjct: 5  TGTVKWFNETKGFGFIERE----GGPDVFVHFSAIKGDGFKTLADGQKVEFDVTDGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 60 -PQAENVVPL 68


>gi|269104191|ref|ZP_06156887.1| putative Cold shock-like protein [Photobacterium damselae subsp.
          damselae CIP 102761]
 gi|268160831|gb|EEZ39328.1| putative Cold shock-like protein [Photobacterium damselae subsp.
          damselae CIP 102761]
          Length = 69

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ VT+D  Q    G
Sbjct: 5  TGTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVTFDIEQGQ-KG 60

Query: 64 KYSAEN 69
            +A  
Sbjct: 61 PQAANV 66


>gi|107028274|ref|YP_625369.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia AU 1054]
 gi|116686267|ref|YP_839514.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia HI2424]
 gi|170734893|ref|YP_001774007.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|105897438|gb|ABF80396.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          AU 1054]
 gi|116651982|gb|ABK12621.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          HI2424]
 gi|169820931|gb|ACA95512.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          MC0-3]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   + GDD+F H S + + G   L E Q V+++  Q   
Sbjct: 1  MDTGIVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRADGFKTLAENQKVSFETKQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 58 G--LQAANIKPL 67


>gi|53720688|ref|YP_109674.1| cold shock-like protein CspD [Burkholderia pseudomallei K96243]
 gi|53723938|ref|YP_104309.1| cold-shock domain-contain protein [Burkholderia mallei ATCC
          23344]
 gi|67641928|ref|ZP_00440693.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
          horse 4]
 gi|76811091|ref|YP_334974.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|83720047|ref|YP_443443.1| cold-shock domain-contain protein [Burkholderia thailandensis
          E264]
 gi|124383483|ref|YP_001027729.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
          10229]
 gi|126440312|ref|YP_001060602.1| CspE-related protein [Burkholderia pseudomallei 668]
 gi|126449743|ref|YP_001082701.1| cold-shock domain-contain protein [Burkholderia mallei NCTC
          10247]
 gi|126452091|ref|YP_001067852.1| cold-shock domain-contain protein [Burkholderia pseudomallei
          1106a]
 gi|134283275|ref|ZP_01769976.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
 gi|167582495|ref|ZP_02375369.1| cold-shock domain family protein [Burkholderia thailandensis
          TXDOH]
 gi|167620585|ref|ZP_02389216.1| cold-shock domain family protein [Burkholderia thailandensis Bt4]
 gi|167721415|ref|ZP_02404651.1| cold-shock domain family protein [Burkholderia pseudomallei DM98]
 gi|167740382|ref|ZP_02413156.1| cold-shock domain family protein [Burkholderia pseudomallei 14]
 gi|167817600|ref|ZP_02449280.1| cold-shock domain family protein [Burkholderia pseudomallei 91]
 gi|167826001|ref|ZP_02457472.1| cold-shock domain family protein [Burkholderia pseudomallei 9]
 gi|167896076|ref|ZP_02483478.1| cold-shock domain family protein [Burkholderia pseudomallei 7894]
 gi|167904462|ref|ZP_02491667.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC
          13177]
 gi|167912723|ref|ZP_02499814.1| cold-shock domain family protein [Burkholderia pseudomallei 112]
 gi|167920683|ref|ZP_02507774.1| cold-shock domain family protein [Burkholderia pseudomallei
          BCC215]
 gi|217424876|ref|ZP_03456373.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
 gi|226198244|ref|ZP_03793815.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|237813987|ref|YP_002898438.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|242317385|ref|ZP_04816401.1| cold-shock domain family protein [Burkholderia pseudomallei
          1106b]
 gi|254175079|ref|ZP_04881740.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
 gi|254180483|ref|ZP_04887081.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
 gi|254190465|ref|ZP_04896973.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|254198469|ref|ZP_04904890.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
 gi|254201381|ref|ZP_04907745.1| cold-shock domain family protein [Burkholderia mallei FMH]
 gi|254206723|ref|ZP_04913074.1| cold-shock domain family protein [Burkholderia mallei JHU]
 gi|254258676|ref|ZP_04949730.1| cold-shock domain family protein [Burkholderia pseudomallei
          1710a]
 gi|254300718|ref|ZP_04968163.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
 gi|254357313|ref|ZP_04973587.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
 gi|257137775|ref|ZP_05586037.1| cold-shock DNA-binding domain protein [Burkholderia thailandensis
          E264]
 gi|52211102|emb|CAH37090.1| cold shock-like protein CspD [Burkholderia pseudomallei K96243]
 gi|52427361|gb|AAU47954.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344]
 gi|76580544|gb|ABA50019.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|83653872|gb|ABC37935.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis E264]
 gi|124291503|gb|ABN00772.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
          10229]
 gi|126219805|gb|ABN83311.1| CspE-like protein [Burkholderia pseudomallei 668]
 gi|126225733|gb|ABN89273.1| cold-shock domain family protein [Burkholderia pseudomallei
          1106a]
 gi|126242613|gb|ABO05706.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC
          10247]
 gi|134245470|gb|EBA45563.1| cold-shock domain family protein [Burkholderia pseudomallei 305]
 gi|147747275|gb|EDK54351.1| cold-shock domain family protein [Burkholderia mallei FMH]
 gi|147752265|gb|EDK59331.1| cold-shock domain family protein [Burkholderia mallei JHU]
 gi|148026377|gb|EDK84462.1| cold-shock domain family protein [Burkholderia mallei 2002721280]
 gi|157810480|gb|EDO87650.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
 gi|157938141|gb|EDO93811.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|160696124|gb|EDP86094.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399]
 gi|169655209|gb|EDS87902.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
 gi|184211022|gb|EDU08065.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
 gi|217392332|gb|EEC32357.1| cold-shock domain family protein [Burkholderia pseudomallei 576]
 gi|225929764|gb|EEH25780.1| cold-shock domain family protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|237506828|gb|ACQ99146.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|238522943|gb|EEP86385.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8
          horse 4]
 gi|242140624|gb|EES27026.1| cold-shock domain family protein [Burkholderia pseudomallei
          1106b]
 gi|254217365|gb|EET06749.1| cold-shock domain family protein [Burkholderia pseudomallei
          1710a]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITPEG    G+D+F H S +   G   L E Q V ++ V+   
Sbjct: 1  MATGTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRVDGFKTLQENQKVEFE-VKTGP 56

Query: 62 NGKYSAENLKLV 73
           G  +A N+K +
Sbjct: 57 KGLQAA-NIKPL 67


>gi|304397050|ref|ZP_07378929.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|304355199|gb|EFM19567.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
          Length = 74

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G    G+D+F H S +   G   L  GQ V +D  +   
Sbjct: 1  METGTVKWFNNSKGFGFICPVG---GGEDIFAHYSTIQMEGYRTLKAGQQVQFDVHEG-P 56

Query: 62 NGKYSAENLKLVPKSS 77
           G +++  + +V   +
Sbjct: 57 KGNHASLIVPVVEVQA 72


>gi|89075956|ref|ZP_01162328.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|89048305|gb|EAR53884.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
          Length = 70

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 6  TGLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 62 LQAANVVAI 70


>gi|224063128|ref|XP_002301004.1| predicted protein [Populus trichocarpa]
 gi|222842730|gb|EEE80277.1| predicted protein [Populus trichocarpa]
          Length = 184

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW++  KG+GFI P+   + G+D+F+H++++ S G   L++GQ V +     +   
Sbjct: 8  TGTVKWFSAQKGFGFIAPD---DGGEDLFVHQTSIQSDGFRTLSDGQPVEFSVGSGEDGR 64

Query: 64 KYSAENL 70
            +A+ +
Sbjct: 65 AKAADVV 71


>gi|300703253|ref|YP_003744855.1| cold shock-like protein cspd (csp-d) [Ralstonia solanacearum
          CFBP2957]
 gi|299070916|emb|CBJ42220.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum
          CFBP2957]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+   E G+++F H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MASGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVVFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQATNIQ 65


>gi|186475442|ref|YP_001856912.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184191901|gb|ACC69866.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFIT +     G+D+F H S + + G  +L E Q V++D V+   
Sbjct: 1  METGIVKWFNDAKGYGFITSDT---GGEDLFAHFSEIRADGFKSLKENQRVSFD-VKAGP 56

Query: 62 NGKYSAENLKLV 73
           G+ +A N++ +
Sbjct: 57 KGRQAA-NIQPL 67


>gi|70727397|ref|YP_254313.1| cold-shock protein C [Staphylococcus haemolyticus JCSC1435]
 gi|68448123|dbj|BAE05707.1| cold-shock protein C [Staphylococcus haemolyticus JCSC1435]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E     G DVF+H S +A  G   L EGQ V +D  +   
Sbjct: 1  MNNGTVKWFNAEKGFGFIERE----DGSDVFVHFSGIAGEGYKTLEEGQKVDFDITEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 57 G--EQATNVVVL 66


>gi|313497351|gb|ADR58717.1| Cold-shock domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 69

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G++KW+N +KGYGFITPE    SG D+F+H  A+   G  +L EGQ VT++ VQ   
Sbjct: 4  RQKGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQQVTFEAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++ V
Sbjct: 60 G--MQADKVQPV 69


>gi|254447090|ref|ZP_05060557.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium
          HTCC5015]
 gi|198263229|gb|EDY87507.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium
          HTCC5015]
          Length = 68

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KG+GFI P   TE GDD+F+H SA+   G   L EG  VT++ V+  
Sbjct: 1  MATAGTVKWFNNAKGFGFIVP---TEGGDDIFVHYSAIIGDGFKTLVEGDSVTFE-VEEG 56

Query: 61 ANGKYSAENLK 71
            GK +   +K
Sbjct: 57 PKGKLAQNVVK 67


>gi|157372097|ref|YP_001480086.1| cold-shock DNA-binding domain-containing protein [Serratia
          proteamaculans 568]
 gi|157323861|gb|ABV42958.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
          Length = 70

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP    +   DVF+H SA+ S+    L EGQ V +   +N A G
Sbjct: 6  TGLVKWFNADKGFGFITP---QDGSKDVFVHFSAIQSSDFKTLDEGQKVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVIAL 70


>gi|294141223|ref|YP_003557201.1| cold shock-like protein cspA [Shewanella violacea DSS12]
 gi|22256742|sp|Q9S1B7|CSPA_SHEVD RecName: Full=Cold shock-like protein CspA
 gi|5869504|dbj|BAA84217.1| CspA [Shewanella violacea]
 gi|293327692|dbj|BAJ02423.1| cold shock-like protein cspA [Shewanella violacea DSS12]
          Length = 70

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          + G++KW+N DKG+GF+T +     G DVF+H  A+AS G   L EGQ VT++  Q    
Sbjct: 5  NTGTVKWFNEDKGFGFLTQD---NGGADVFVHFRAIASEGFKTLDEGQKVTFEVEQG-PK 60

Query: 63 GKYSAENLKL 72
          G  ++  + L
Sbjct: 61 GLQASNVIAL 70


>gi|330810451|ref|YP_004354913.1| transcription factor, Csd family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327378559|gb|AEA69909.1| putative Transcription factor, Csd family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 89

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KGYGFI   G  +  +D+F H SA+   G   L  GQ VT+D +Q     
Sbjct: 7  NGKVKWFNNAKGYGFIIAAGRDD--EDLFAHYSAINMEGYKTLKAGQPVTFDVIQGPKG- 63

Query: 64 KYSAENLKLV 73
             A N+++V
Sbjct: 64 -LHAVNIRVV 72


>gi|300173985|ref|YP_003773151.1| cold shock protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299888364|emb|CBL92332.1| Cold shock protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 66

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGF+T E    +G+DVF H SA+   G   L EGQ V ++   +D 
Sbjct: 1  MEKGTVKWFNGEKGYGFVTRE----NGEDVFAHFSAIQGDGFKTLEEGQAVEFEVETSD- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGLQAANISKL 66


>gi|317053579|ref|YP_004118713.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
          At-9b]
 gi|316952684|gb|ADU72157.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
          Length = 70

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG GFITPE       DVF+H SA+      +L EGQ V +  ++N   G 
Sbjct: 7  GTVKWFNAEKGLGFITPE---NGSKDVFVHFSAIQGNDYRSLDEGQRVEF-ILENGQKGP 62

Query: 65 YSAE 68
           +A 
Sbjct: 63 AAAN 66


>gi|163749217|ref|ZP_02156467.1| putative Cold shock-like protein [Shewanella benthica KT99]
 gi|161331287|gb|EDQ02176.1| putative Cold shock-like protein [Shewanella benthica KT99]
          Length = 70

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  ++ S G   L EGQ V+++  Q    G
Sbjct: 6  TGLVKWFNEEKGFGFITQD---NGGADVFVHFRSITSDGFKTLAEGQKVSFEVEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 LQAANVVAL 70


>gi|229085316|ref|ZP_04217558.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
 gi|228698035|gb|EEL50778.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ V+++ V++ 
Sbjct: 1  MTLTGKVKWFNSEKGFGFIEVE----DGNDVFVHFSAITGDGFKSLDEGQEVSFE-VEDG 55

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 56 NRGPQAKNVVKL 67


>gi|121631|sp|P27484|GRP2_NICSY RecName: Full=Glycine-rich protein 2
 gi|19743|emb|CAA42622.1| nsGRP-2 [Nicotiana sylvestris]
          Length = 214

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KG+GFITP+   + G+D+F+H+S + S G  +L EG+ V ++ V++  +G
Sbjct: 10 KGTVKWFSDQKGFGFITPD---DGGEDLFVHQSGIRSEGFRSLAEGETVEFE-VESGGDG 65

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 66 RTKAVDVT 73


>gi|300716061|ref|YP_003740864.1| Cold-shock DNA-binding protein [Erwinia billingiae Eb661]
 gi|299061897|emb|CAX59013.1| Cold-shock DNA-binding protein [Erwinia billingiae Eb661]
          Length = 75

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P      G+D+F H S +   G   L  GQ V +D  +   
Sbjct: 1  METGTVKWFNNAKGFGFICP---VSGGEDIFAHYSTIKMDGYRTLKAGQQVQFDVHEGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|288817819|ref|YP_003432166.1| cold shock protein [Hydrogenobacter thermophilus TK-6]
 gi|288787218|dbj|BAI68965.1| cold shock protein [Hydrogenobacter thermophilus TK-6]
 gi|308751417|gb|ADO44900.1| cold-shock DNA-binding domain protein [Hydrogenobacter
          thermophilus TK-6]
          Length = 69

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW++ +KGYGFIT +   ++  DVF+H SA+   G   L +GQ V ++  ++ 
Sbjct: 1  MALKGTVKWFSKEKGYGFITRD---DNQGDVFVHFSAIQQRGFKTLEQGQRVEFEIEEDS 57

Query: 61 ANGKYSAENLKLV 73
             +  A+N++ +
Sbjct: 58 KGPR--AKNVRPI 68


>gi|325003541|ref|ZP_08124653.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          sp. P1]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +   + G DVF+H SA+ + G   L E Q V +   Q   
Sbjct: 1  MPQGTVKWFNAEKGFGFIATD---DEGPDVFVHYSAIEANGFRTLEENQRVDFQSSQGKK 57

Query: 62 NGKYSAENLKLV 73
               A+ ++++
Sbjct: 58 G--PQADTVRVI 67


>gi|300690669|ref|YP_003751664.1| cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum
          PSI07]
 gi|299077729|emb|CBJ50367.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum
          PSI07]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+   E G+++F H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MANGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMGGFKTLKEGQRVVFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQATNIQ 65


>gi|30262422|ref|NP_844799.1| cold shock protein CspA [Bacillus anthracis str. Ames]
 gi|42781516|ref|NP_978763.1| cold shock protein CspA [Bacillus cereus ATCC 10987]
 gi|47527715|ref|YP_019064.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor']
 gi|47570638|ref|ZP_00241249.1| cold-shock domain family protein-related protein [Bacillus cereus
          G9241]
 gi|49185266|ref|YP_028518.1| cold shock protein CspA [Bacillus anthracis str. Sterne]
 gi|49477693|ref|YP_036543.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|52143060|ref|YP_083768.1| cold shock protein [Bacillus cereus E33L]
 gi|118477820|ref|YP_894971.1| cold-shock DNA-binding protein family protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|170687065|ref|ZP_02878284.1| cold shock protein CspA [Bacillus anthracis str. A0465]
 gi|177649670|ref|ZP_02932672.1| cold shock protein CspA [Bacillus anthracis str. A0174]
 gi|190565634|ref|ZP_03018554.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I]
 gi|196033810|ref|ZP_03101221.1| cold shock protein CspA [Bacillus cereus W]
 gi|196039884|ref|ZP_03107187.1| cold shock protein CspA [Bacillus cereus NVH0597-99]
 gi|196043556|ref|ZP_03110794.1| cold shock protein CspA [Bacillus cereus 03BB108]
 gi|206973608|ref|ZP_03234526.1| cold shock protein CspA [Bacillus cereus H3081.97]
 gi|217959917|ref|YP_002338473.1| cold shock protein CspA [Bacillus cereus AH187]
 gi|218903556|ref|YP_002451390.1| cold shock protein CspA [Bacillus cereus AH820]
 gi|222096006|ref|YP_002530063.1| cold shock protein [Bacillus cereus Q1]
 gi|225864386|ref|YP_002749764.1| cold shock protein CspA [Bacillus cereus 03BB102]
 gi|227814766|ref|YP_002814775.1| cold shock protein CspA [Bacillus anthracis str. CDC 684]
 gi|228915013|ref|ZP_04078615.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228927471|ref|ZP_04090526.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228933740|ref|ZP_04096587.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228946025|ref|ZP_04108365.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228985510|ref|ZP_04145667.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229030123|ref|ZP_04186185.1| Cold shock protein cspB [Bacillus cereus AH1271]
 gi|229091398|ref|ZP_04222612.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
 gi|229121965|ref|ZP_04251183.1| Cold shock protein cspB [Bacillus cereus 95/8201]
 gi|229139109|ref|ZP_04267686.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
 gi|229155998|ref|ZP_04284099.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
 gi|229184633|ref|ZP_04311834.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
 gi|229196632|ref|ZP_04323376.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|229602363|ref|YP_002866754.1| cold shock protein CspA [Bacillus anthracis str. A0248]
 gi|254684998|ref|ZP_05148858.1| cold shock protein CspA [Bacillus anthracis str. CNEVA-9066]
 gi|254722404|ref|ZP_05184192.1| cold shock protein CspA [Bacillus anthracis str. A1055]
 gi|254737445|ref|ZP_05195149.1| cold shock protein CspA [Bacillus anthracis str. Western North
          America USA6153]
 gi|254743370|ref|ZP_05201055.1| cold shock protein CspA [Bacillus anthracis str. Kruger B]
 gi|254751761|ref|ZP_05203798.1| cold shock protein CspA [Bacillus anthracis str. Vollum]
 gi|254760279|ref|ZP_05212303.1| cold shock protein CspA [Bacillus anthracis str. Australia 94]
 gi|301053941|ref|YP_003792152.1| cold shock protein [Bacillus anthracis CI]
 gi|49035526|sp|Q81QK2|CSPE_BACAN RecName: Full=Cold shock-like protein CspE
 gi|30257053|gb|AAP26285.1| cold shock protein CspA [Bacillus anthracis str. Ames]
 gi|42737439|gb|AAS41371.1| cold shock protein CspA [Bacillus cereus ATCC 10987]
 gi|47502863|gb|AAT31539.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor']
 gi|47552693|gb|EAL11133.1| cold-shock domain family protein-related protein [Bacillus cereus
          G9241]
 gi|49179193|gb|AAT54569.1| cold shock protein CspA [Bacillus anthracis str. Sterne]
 gi|49329249|gb|AAT59895.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|51976529|gb|AAU18079.1| cold shock protein [Bacillus cereus E33L]
 gi|118417045|gb|ABK85464.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
          str. Al Hakam]
 gi|170669116|gb|EDT19860.1| cold shock protein CspA [Bacillus anthracis str. A0465]
 gi|172084744|gb|EDT69802.1| cold shock protein CspA [Bacillus anthracis str. A0174]
 gi|190563661|gb|EDV17626.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I]
 gi|195993490|gb|EDX57447.1| cold shock protein CspA [Bacillus cereus W]
 gi|196025865|gb|EDX64534.1| cold shock protein CspA [Bacillus cereus 03BB108]
 gi|196029143|gb|EDX67747.1| cold shock protein CspA [Bacillus cereus NVH0597-99]
 gi|206747764|gb|EDZ59153.1| cold shock protein CspA [Bacillus cereus H3081.97]
 gi|217064050|gb|ACJ78300.1| cold shock protein CspA [Bacillus cereus AH187]
 gi|218534973|gb|ACK87371.1| cold shock protein CspA [Bacillus cereus AH820]
 gi|221240064|gb|ACM12774.1| cold shock protein [Bacillus cereus Q1]
 gi|225787378|gb|ACO27595.1| cold shock protein CspA [Bacillus cereus 03BB102]
 gi|227007633|gb|ACP17376.1| cold shock protein CspA [Bacillus anthracis str. CDC 684]
 gi|228586988|gb|EEK45062.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|228598846|gb|EEK56465.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
 gi|228627605|gb|EEK84331.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
 gi|228644464|gb|EEL00719.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
 gi|228661493|gb|EEL17115.1| Cold shock protein cspB [Bacillus cereus 95/8201]
 gi|228691940|gb|EEL45683.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
 gi|228731181|gb|EEL82101.1| Cold shock protein cspB [Bacillus cereus AH1271]
 gi|228774275|gb|EEM22684.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228813671|gb|EEM59952.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228825973|gb|EEM71759.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228832190|gb|EEM77772.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228844631|gb|EEM89680.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229266771|gb|ACQ48408.1| cold shock protein CspA [Bacillus anthracis str. A0248]
 gi|300376110|gb|ADK05014.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
 gi|324326434|gb|ADY21694.1| cold shock protein CspA [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ V+++ V++ 
Sbjct: 1  MTLTGKVKWFNSEKGFGFIEVE----GGNDVFVHFSAITGDGFKSLDEGQEVSFE-VEDG 55

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 56 NRGPQAKNVVKL 67


>gi|258516119|ref|YP_003192341.1| cold-shock DNA-binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257779824|gb|ACV63718.1| cold-shock DNA-binding domain protein [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 65

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI  E     G D+F+H SA+   G   L EGQ V ++ V+ +  G
Sbjct: 2  EGTVKWFNAEKGFGFIEQE----GGGDIFVHFSAIQGDGFKTLDEGQKVKFEVVEGN-RG 56

Query: 64 KYSAENLKL 72
            +A   ++
Sbjct: 57 PQAANVSRI 65


>gi|228919954|ref|ZP_04083308.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228938352|ref|ZP_04100963.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228971230|ref|ZP_04131859.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228977839|ref|ZP_04138221.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|228781857|gb|EEM30053.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|228788465|gb|EEM36415.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228821298|gb|EEM67312.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228839667|gb|EEM84954.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|326938860|gb|AEA14756.1| cold shock protein [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI        G+DVF+H SA+ + G  +L EGQ V+++  ++ 
Sbjct: 1  MAVTGQVKWFNNEKGFGFIE----VPGGNDVFVHFSAIETDGFKSLEEGQKVSFEI-EDG 55

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 56 NRGPQAKNVIKL 67


>gi|227551594|ref|ZP_03981643.1| cold shock protein CspC [Enterococcus faecium TX1330]
 gi|257884481|ref|ZP_05664134.1| cold shock protein CspC [Enterococcus faecium 1,231,501]
 gi|257895800|ref|ZP_05675453.1| cold shock protein CspC [Enterococcus faecium Com12]
 gi|257898422|ref|ZP_05678075.1| cold shock protein CspC [Enterococcus faecium Com15]
 gi|293377586|ref|ZP_06623775.1| cold-shock DNA-binding domain protein [Enterococcus faecium
          PC4.1]
 gi|293571778|ref|ZP_06682794.1| cold-shock protein [Enterococcus faecium E980]
 gi|227179271|gb|EEI60243.1| cold shock protein CspC [Enterococcus faecium TX1330]
 gi|257820319|gb|EEV47467.1| cold shock protein CspC [Enterococcus faecium 1,231,501]
 gi|257832365|gb|EEV58786.1| cold shock protein CspC [Enterococcus faecium Com12]
 gi|257836334|gb|EEV61408.1| cold shock protein CspC [Enterococcus faecium Com15]
 gi|291608032|gb|EFF37338.1| cold-shock protein [Enterococcus faecium E980]
 gi|292643586|gb|EFF61707.1| cold-shock DNA-binding domain protein [Enterococcus faecium
          PC4.1]
          Length = 65

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N DKG+GFIT     E G+DVF H SA+   G  +L EGQ VTYD  +   
Sbjct: 1  MNKGTVKWFNSDKGFGFIT----GEDGNDVFAHFSAIQGEGFKSLDEGQAVTYDIEEGQR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--LQAVNI 63


>gi|251796131|ref|YP_003010862.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
 gi|247543757|gb|ACT00776.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2]
          Length = 65

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KGYGFI+ E    +G+DVF+H S++   G   L EGQ V ++  Q +  G
Sbjct: 2  KGTVKWFNAEKGYGFISVE----NGEDVFVHYSSIQGDGFKALEEGQSVEFEITQGN-RG 56

Query: 64 KYSAENLKL 72
            ++  +KL
Sbjct: 57 AQASNVIKL 65


>gi|39995688|ref|NP_951639.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA]
 gi|39982452|gb|AAR33912.1| cold-shock domain family protein [Geobacter sulfurreducens PCA]
 gi|298504699|gb|ADI83422.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
          KN400]
          Length = 66

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KGYGFI  E    +G+DVF+H S++   G   L EGQ VT+D VQ  A
Sbjct: 1  MAKGVVKWFNDSKGYGFIEQE----NGEDVFVHFSSIQGDGFKTLVEGQAVTFDVVQG-A 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 KGLQAANVMK 65


>gi|297624311|ref|YP_003705745.1| cold-shock DNA-binding domain-containing protein [Truepera
          radiovictrix DSM 17093]
 gi|297165491|gb|ADI15202.1| cold-shock DNA-binding domain protein [Truepera radiovictrix DSM
          17093]
          Length = 79

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ +KG+GFI  +   + G DVF H SA+  +G  +L EG  V ++  Q   
Sbjct: 1  MATGRVKWFSNEKGFGFIEQD---DGGADVFCHFSAITGSGYRSLNEGDEVEFEVEQGQK 57

Query: 62 NGKYSAENLKL 72
               A+N+ +
Sbjct: 58 G--LQAKNVTV 66


>gi|289549550|ref|YP_003470454.1| Cold shock protein CspC [Staphylococcus lugdunensis HKU09-01]
 gi|289179082|gb|ADC86327.1| Cold shock protein CspC [Staphylococcus lugdunensis HKU09-01]
          Length = 66

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E     G+DVF+H S +A  G   L EGQ V +D  +   
Sbjct: 1  MNNGTVKWFNAEKGFGFIERE----DGNDVFVHFSGIAGEGYKTLEEGQKVEFDITEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 57 G--DQATNVVVM 66


>gi|297565415|ref|YP_003684387.1| cold-shock DNA-binding domain-containing protein [Meiothermus
          silvanus DSM 9946]
 gi|296849864|gb|ADH62879.1| cold-shock DNA-binding domain protein [Meiothermus silvanus DSM
          9946]
          Length = 74

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  EG T    DVF+H SA+ S G   L EG +V +D      
Sbjct: 1  MAKGKVKWFNAEKGFGFIEREGDT----DVFVHYSAIQSKGFRTLNEGDVVEFDVEPGKN 56

Query: 62 NGKYSAENLKLVPKS 76
               A N+ +V  +
Sbjct: 57 GKGPQAANVNVVEAA 71


>gi|108803141|ref|YP_643078.1| cold-shock DNA-binding protein family protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108764384|gb|ABG03266.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 67

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW++ +KGYGFI+P+   +  +D+F+H + +A  G   L EG  V+Y+  +   
Sbjct: 1  MAQGTVKWFSDEKGYGFISPD---DGSEDLFVHYTGIAGEGFKTLEEGARVSYEATRGRK 57

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 58 G--MQAENVSPL 67


>gi|315651983|ref|ZP_07904985.1| cold shock protein Csp [Eubacterium saburreum DSM 3986]
 gi|315485812|gb|EFU76192.1| cold shock protein Csp [Eubacterium saburreum DSM 3986]
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++RG++KW+N  KGYGFI    S E G+DVF+H S +   G   L EG  V YD  +   
Sbjct: 1  MNRGTVKWFNNQKGYGFI----SDEGGNDVFVHFSDLNMDGFKTLDEGNSVEYDLTEGAK 56

Query: 62 NGKYSAENLKLV 73
               A N+ +V
Sbjct: 57 G--PQAVNVTVV 66


>gi|240145038|ref|ZP_04743639.1| cold shock protein B [Roseburia intestinalis L1-82]
 gi|257202861|gb|EEV01146.1| cold shock protein B [Roseburia intestinalis L1-82]
 gi|291535362|emb|CBL08474.1| cold-shock DNA-binding protein family [Roseburia intestinalis
          M50/1]
 gi|291538173|emb|CBL11284.1| cold-shock DNA-binding protein family [Roseburia intestinalis
          XB6B4]
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFI    S E G+DVF+H SA+   G   L +G+ V ++  + + 
Sbjct: 1  MQQGTVKWFNAKKGYGFI----SDEQGNDVFVHFSALNMDGFKELKDGERVEFEVTEGE- 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGPQAANVSRI 66


>gi|303240450|ref|ZP_07326967.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
          CD2]
 gi|302592015|gb|EFL61746.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus
          CD2]
          Length = 66

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E     G+DVF+H SA+ + G   L EGQ V ++ V+N  
Sbjct: 1  MLNGTVKWFNAGKGFGFIERE----DGEDVFVHFSAINADGYKTLNEGQKVQFE-VENGQ 55

Query: 62 NGKYSAENL 70
           G  +   +
Sbjct: 56 RGLQAKNVI 64


>gi|238019427|ref|ZP_04599853.1| hypothetical protein VEIDISOL_01296 [Veillonella dispar ATCC
          17748]
 gi|313893700|ref|ZP_07827267.1| cold shock protein CspB [Veillonella sp. oral taxon 158 str.
          F0412]
 gi|237864126|gb|EEP65416.1| hypothetical protein VEIDISOL_01296 [Veillonella dispar ATCC
          17748]
 gi|313441714|gb|EFR60139.1| cold shock protein CspB [Veillonella sp. oral taxon 158 str.
          F0412]
          Length = 65

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KGYGFI  E     G DVF+H SA+   G  +LTEGQ V +D V +   G 
Sbjct: 3  GKVKWFSAEKGYGFIERE----DGSDVFVHYSAIQDEGFKSLTEGQNVEFDIV-DGNRGP 57

Query: 65 YSAENLK 71
           +A  +K
Sbjct: 58 QAANVVK 64


>gi|315303807|ref|ZP_07874300.1| conserved domain protein [Listeria ivanovii FSL F6-596]
 gi|313627819|gb|EFR96459.1| conserved domain protein [Listeria ivanovii FSL F6-596]
          Length = 66

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI     ++ G+D+F+H +A+   G  +L EGQ V ++ V+ + 
Sbjct: 1  MQNGKVKWFNNEKGYGFIE----SDGGEDIFVHFTAIQGDGYKSLEEGQAVIFEVVEGNR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--AQAANVE 64


>gi|312144553|ref|YP_003995999.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
 gi|311905204|gb|ADQ15645.1| cold-shock DNA-binding domain protein [Halanaerobium sp.
          'sapolanicus']
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M++ G +KW++  KGYGFI  E     GDDVF+H SA+   G   L + Q V ++ V+ D
Sbjct: 1  MIYTGKVKWFDAKKGYGFIERE----DGDDVFVHFSAIEDEGFKTLEDEQEVEFEIVEGD 56

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 57 -RGPQAENVVKL 67


>gi|304310767|ref|YP_003810365.1| Cold shock-like protein [gamma proteobacterium HdN1]
 gi|301796500|emb|CBL44708.1| Cold shock-like protein [gamma proteobacterium HdN1]
          Length = 69

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT +     G DVF+H  A+ + G   L EGQ V+++ V+    G
Sbjct: 5  TGTVKWFNEEKGFGFITQD---NGGPDVFVHFRAIQAEGFKTLKEGQPVSFN-VEKGQKG 60

Query: 64 KYSAENL 70
            +A  +
Sbjct: 61 LQAANVV 67


>gi|307726451|ref|YP_003909664.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1003]
 gi|307586976|gb|ADN60373.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S +   G   L E Q V+++  Q   
Sbjct: 1  MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIKGNGFKTLAENQKVSFETKQG-P 56

Query: 62 NGKYSAE 68
           G  +A 
Sbjct: 57 KGLQAAN 63


>gi|147791391|emb|CAN59784.1| hypothetical protein VITISV_042163 [Vitis vinifera]
          Length = 247

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G ++W++  KG+GFITP    E G+D+F+H+S++ S G  +L EG+ V +  V  + +G
Sbjct: 7  TGVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGE-DG 62

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 63 RTKAVDVT 70


>gi|55820886|ref|YP_139328.1| cold shock protein B [Streptococcus thermophilus LMG 18311]
 gi|55822803|ref|YP_141244.1| cold shock protein B [Streptococcus thermophilus CNRZ1066]
 gi|55736871|gb|AAV60513.1| cold shock protein B [Streptococcus thermophilus LMG 18311]
 gi|55738788|gb|AAV62429.1| cold shock protein B [Streptococcus thermophilus CNRZ1066]
          Length = 88

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KG+GFIT    +E G D+F H S++ S G  +L E Q V +D     
Sbjct: 22 IMANGTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFDVEVGQ 77

Query: 61 ANGKYSAENLK 71
                A N+ 
Sbjct: 78 RG--PQAVNIT 86


>gi|15925694|ref|NP_373228.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|15928289|ref|NP_375822.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus
          N315]
 gi|21284352|ref|NP_647440.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus MW2]
 gi|57651099|ref|YP_187517.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus COL]
 gi|82752283|ref|YP_418024.1| cold shock protein [Staphylococcus aureus RF122]
 gi|148269136|ref|YP_001248079.1| cold-shock DNA-binding domain-containing protein [Staphylococcus
          aureus subsp. aureus JH9]
 gi|150395218|ref|YP_001317893.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus JH1]
 gi|151222817|ref|YP_001333639.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|156981019|ref|YP_001443278.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|221142463|ref|ZP_03566956.1| cold shock protein [Staphylococcus aureus subsp. aureus str.
          JKD6009]
 gi|253316706|ref|ZP_04839919.1| cold shock protein [Staphylococcus aureus subsp. aureus str.
          CF-Marseille]
 gi|255007476|ref|ZP_05146077.2| cold shock protein [Staphylococcus aureus subsp. aureus
          Mu50-omega]
 gi|269204342|ref|YP_003283611.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus ED98]
 gi|284023028|ref|ZP_06377426.1| cold shock protein [Staphylococcus aureus subsp. aureus 132]
 gi|295429287|ref|ZP_06821909.1| cold shock-like protein cspLA [Staphylococcus aureus subsp.
          aureus EMRSA16]
 gi|297589211|ref|ZP_06947852.1| cold shock protein B [Staphylococcus aureus subsp. aureus MN8]
 gi|304379938|ref|ZP_07362667.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|2226347|gb|AAB61743.1| CspB [Staphylococcus aureus RN4220]
 gi|13702661|dbj|BAB43801.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus
          N315]
 gi|14248479|dbj|BAB58866.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|21205796|dbj|BAB96488.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus MW2]
 gi|57285285|gb|AAW37379.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
          aureus COL]
 gi|82657814|emb|CAI82269.1| cold shock protein [Staphylococcus aureus RF122]
 gi|147742205|gb|ABQ50503.1| cold-shock DNA-binding protein family [Staphylococcus aureus
          subsp. aureus JH9]
 gi|149947670|gb|ABR53606.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp.
          aureus JH1]
 gi|150375617|dbj|BAF68877.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|156723154|dbj|BAF79571.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|262076632|gb|ACY12605.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus ED98]
 gi|269942290|emb|CBI50705.1| cold shock protein [Staphylococcus aureus subsp. aureus TW20]
 gi|283471919|emb|CAQ51130.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          ST398]
 gi|285818367|gb|ADC38854.1| Cold shock protein CspG [Staphylococcus aureus 04-02981]
 gi|295127046|gb|EFG56690.1| cold shock-like protein cspLA [Staphylococcus aureus subsp.
          aureus EMRSA16]
 gi|297577722|gb|EFH96435.1| cold shock protein B [Staphylococcus aureus subsp. aureus MN8]
 gi|298695962|gb|ADI99184.1| cold shock protein, CSD family [Staphylococcus aureus subsp.
          aureus ED133]
 gi|302334319|gb|ADL24512.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
          subsp. aureus JKD6159]
 gi|302752582|gb|ADL66759.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
          subsp. aureus str. JKD6008]
 gi|304341518|gb|EFM07428.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|312436869|gb|ADQ75940.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH60]
 gi|312831043|emb|CBX35885.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus
          ECT-R 2]
 gi|315129533|gb|EFT85525.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195215|gb|EFU25603.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS00]
 gi|315197908|gb|EFU28241.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141408|gb|EFW33251.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
          subsp. aureus MRSA131]
 gi|320144390|gb|EFW36155.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
          subsp. aureus MRSA177]
 gi|323439708|gb|EGA97426.1| cold shock protein [Staphylococcus aureus O11]
 gi|323443281|gb|EGB00898.1| cold shock protein [Staphylococcus aureus O46]
 gi|329315425|gb|AEB89838.1| Cold shock protein [Staphylococcus aureus subsp. aureus T0131]
 gi|329725714|gb|EGG62193.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus
          21172]
 gi|329731711|gb|EGG68071.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus
          21189]
 gi|329732388|gb|EGG68738.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus
          21193]
          Length = 66

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E    +G DVF+H S +AS G   L EGQ VT++  +   
Sbjct: 1  MNNGTVKWFNAEKGFGFIEQE----NGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 57 G--DQAVNVQTV 66


>gi|310823251|ref|YP_003955609.1| Cold-shock protein CspB [Stigmatella aurantiaca DW4/3-1]
 gi|309396323|gb|ADO73782.1| Cold-shock protein CspB [Stigmatella aurantiaca DW4/3-1]
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E    +G+DVF H SA+   G   L EGQ V ++  +   
Sbjct: 1  MAIGTVKWFNDAKGFGFIAQE----NGEDVFCHHSAINMDGFRTLAEGQKVEFEVTRGPK 56

Query: 62 NGKYSAENLKLV 73
             + A+N++ V
Sbjct: 57 G--FQAQNVRAV 66


>gi|113970957|ref|YP_734750.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-4]
 gi|114048181|ref|YP_738731.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-7]
 gi|113885641|gb|ABI39693.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4]
 gi|113889623|gb|ABI43674.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7]
          Length = 69

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P+     G D F+H  A+ S G   L EGQ V+Y+  Q    G
Sbjct: 5  TGIVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSEGFKTLAEGQKVSYEVEQGQ-KG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PQAANVVVL 69


>gi|320333925|ref|YP_004170636.1| cold-shock DNA-binding domain-containing protein [Deinococcus
          maricopensis DSM 21211]
 gi|319755214|gb|ADV66971.1| cold-shock DNA-binding domain protein [Deinococcus maricopensis
          DSM 21211]
          Length = 86

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  +GS     DVF H SA+ +AG   L EG  V +D  +   
Sbjct: 1  MAVGRVKWFNAEKGFGFIEVDGS----PDVFAHFSAIKAAGFKKLNEGDEVEFDIEEGQR 56

Query: 62 NGKYSAENLKLVPKSSN 78
               A N+ +   +  
Sbjct: 57 GKGPQAANIVVTKAAPE 73


>gi|160880994|ref|YP_001559962.1| cold-shock DNA-binding domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160429660|gb|ABX43223.1| cold-shock DNA-binding domain protein [Clostridium
          phytofermentans ISDg]
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KG+GFIT   ++E+G+DVF+H S +AS G  +L EGQ VT++  +   
Sbjct: 1  MNKGTVKWFNAQKGFGFIT---NSETGEDVFVHFSGIASEGFKSLEEGQNVTFEITKGAR 57

Query: 62 NGKYSAENLKL 72
               A N+ +
Sbjct: 58 G--MQATNVSI 66


>gi|322433205|ref|YP_004210426.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321165597|gb|ADW71299.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 69

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGF+      E   DVF+H S +   G  +L EG  VT+D +Q + 
Sbjct: 1  MYKGTVKWFNNAKGYGFL----GREGDPDVFVHYSPIQIDGYKSLEEGDAVTFDIIQGET 56

Query: 62 NGKYSAENLK 71
           G+  A+ + 
Sbjct: 57 -GRPQADRVS 65


>gi|270264889|ref|ZP_06193153.1| Cold shock-like protein CspJ [Serratia odorifera 4Rx13]
 gi|270041187|gb|EFA14287.1| Cold shock-like protein CspJ [Serratia odorifera 4Rx13]
          Length = 70

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP    +   DVF+H SA+ S+    L EGQ V +  V++ A G
Sbjct: 6  TGLVKWFNADKGFGFITP---QDGSKDVFVHFSAIQSSDFKTLDEGQKVEFS-VESGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVIAL 70


>gi|254506150|ref|ZP_05118294.1| cold shock domain protein CspD [Vibrio parahaemolyticus 16]
 gi|219550968|gb|EED27949.1| cold shock domain protein CspD [Vibrio parahaemolyticus 16]
          Length = 73

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      DVF H S +   G   L  GQ V ++  +   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGED---GDVFAHYSTIQMDGYRTLKAGQQVNFEVEEGPK 57

Query: 62 NGKYSAENLKLVPKS 76
               A  +  V   
Sbjct: 58 G--SHASVVTPVEAQ 70


>gi|148559223|ref|YP_001258444.1| cold-shock family protein [Brucella ovis ATCC 25840]
 gi|148370480|gb|ABQ60459.1| cold-shock family protein [Brucella ovis ATCC 25840]
          Length = 69

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+G I P+   +   DVF+H SAV  AGL +L EGQ V Y+ V +  
Sbjct: 1  MANGTVKFFNSTKGFGSIQPD---DGSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRR 57

Query: 62 NGKYSAENLK 71
          +GK +A NL+
Sbjct: 58 SGKSAAANLE 67


>gi|41406767|ref|NP_959603.1| CspA_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118467308|ref|YP_880121.1| hypothetical protein MAV_0852 [Mycobacterium avium 104]
 gi|254773743|ref|ZP_05215259.1| hypothetical protein MaviaA2_03582 [Mycobacterium avium subsp.
          avium ATCC 25291]
 gi|41395117|gb|AAS02986.1| CspA_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118168595|gb|ABK69492.1| conserved domain protein [Mycobacterium avium 104]
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFITP+   +   D+F+H S +  +G  +L E Q V +D  Q  A
Sbjct: 1  MAQGTVKWFNGEKGFGFITPD---DGTKDLFVHYSEIQGSGYRSLDENQRVQFDVEQG-A 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPQA 61


>gi|90420715|ref|ZP_01228621.1| cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90335006|gb|EAS48767.1| cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 70

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI+P+     G DVF+H S+V  +G+ +LTE Q V++D   + 
Sbjct: 1  MAQTGTVKFFNMDKGFGFISPDA---GGSDVFVHISSVERSGMTSLTENQKVSFDTEPDP 57

Query: 61 ANGKYSAENLK 71
                A N++
Sbjct: 58 RGKGPKAVNIQ 68


>gi|220930266|ref|YP_002507175.1| cold-shock DNA-binding domain protein [Clostridium cellulolyticum
          H10]
 gi|220000594|gb|ACL77195.1| cold-shock DNA-binding domain protein [Clostridium cellulolyticum
          H10]
          Length = 66

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  +     G+DVF+H SA+   G   L EG  V +D V+  A
Sbjct: 1  MEKGRVKWFNAEKGFGFIERD----GGNDVFVHFSAITMDGYKTLEEGSEVVFDVVEG-A 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 KGPQAANV 63


>gi|170691171|ref|ZP_02882337.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
 gi|170144420|gb|EDT12582.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S ++  G   L E Q V+++  Q   
Sbjct: 1  MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGNGFKTLAENQKVSFETKQG-P 56

Query: 62 NGKYSAE 68
           G  +A 
Sbjct: 57 KGLQAAN 63


>gi|167566047|ref|ZP_02358963.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
          EO147]
 gi|167573125|ref|ZP_02365999.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis
          C6786]
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+     GDD+F H S +   G   L E Q V+++  +   
Sbjct: 1  MDTGTVKWFNDSKGFGFISPDS---GGDDLFAHFSEIRGEGFKTLAENQKVSFE-TKRGP 56

Query: 62 NGKYSAENLKLV 73
           G  +A N+K +
Sbjct: 57 KGLQAA-NIKAL 67


>gi|54025407|ref|YP_119649.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54016915|dbj|BAD58285.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +GS+KW+N +KG+GFI  +G    G DVF+H SA+  +G   L EGQ V ++  Q   
Sbjct: 1  MAQGSVKWFNGEKGFGFIAQDG---GGPDVFVHYSAIGGSGFKTLDEGQRVEFEIGQGQK 57

Query: 62 NGKYSAENLKLV 73
               A++++ +
Sbjct: 58 G--PQAQDVRAI 67


>gi|328545836|ref|YP_004305945.1| cold shock transcription regulator [polymorphum gilvum
          SL003B-26A1]
 gi|326415576|gb|ADZ72639.1| Probable cold shock transcription regulator [Polymorphum gilvum
          SL003B-26A1]
          Length = 68

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI PE   +   DVF+H SAV  +G+  L EGQ V ++  Q D 
Sbjct: 1  MKTGTVKFFNGQKGFGFIQPE---DGSRDVFVHISAVERSGIGRLDEGQKVQFELEQ-DR 56

Query: 62 NGKYSAENLKLV 73
           G+ SA NL+L+
Sbjct: 57 QGRSSAANLQLL 68


>gi|225431120|ref|XP_002266115.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 241

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G ++W++  KG+GFITP    E G+D+F+H+S++ S G  +L EG+ V +  V  + +G
Sbjct: 7  TGVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGE-DG 62

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 63 RTKAVDVT 70


>gi|149196184|ref|ZP_01873239.1| stress protein, member of the CspA-family [Lentisphaera araneosa
          HTCC2155]
 gi|149140445|gb|EDM28843.1| stress protein, member of the CspA-family [Lentisphaera araneosa
          HTCC2155]
          Length = 68

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI  +     G DVF+H SA+   G   L EGQ V +D V++   G
Sbjct: 5  QGRVKWFNETKGFGFIEQD----GGKDVFVHFSAIQGQGFKTLEEGQKVEFD-VEDGQKG 59

Query: 64 KYSAENLKLV 73
             A NL ++
Sbjct: 60 PQ-AVNLTVL 68


>gi|145225802|ref|YP_001136480.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          gilvum PYR-GCK]
 gi|315442494|ref|YP_004075373.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
 gi|145218288|gb|ABP47692.1| cold-shock DNA-binding protein family [Mycobacterium gilvum
          PYR-GCK]
 gi|315260797|gb|ADT97538.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI P+ ++E   DVF+H S++  +G  +L E Q V ++  Q  A
Sbjct: 1  MAQGTVKWFNGDKGFGFIAPDNASE---DVFVHYSSITGSGFKSLDENQRVEFEIEQG-A 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPQA 61


>gi|89097883|ref|ZP_01170770.1| cold shock protein [Bacillus sp. NRRL B-14911]
 gi|89087385|gb|EAR66499.1| cold shock protein [Bacillus sp. NRRL B-14911]
          Length = 66

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFI     T  G DVF+H SA+ S G  +L EG+ VT++ V+ + 
Sbjct: 1  MNTGKVKWFNAEKGFGFIE----TSEGQDVFVHFSAIQSEGFKSLEEGEAVTFEIVEGN- 55

Query: 62 NGKYSAENLK 71
           G  ++  +K
Sbjct: 56 RGPQASNVVK 65


>gi|170723394|ref|YP_001751082.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida W619]
 gi|169761397|gb|ACA74713.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
          Length = 70

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KGYGFITPE    SG D+F+H  A+   G  +L EGQ VT++ VQ   
Sbjct: 4  RQNGTVKWFNDEKGYGFITPE----SGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++++
Sbjct: 60 G--LQADKVQVL 69


>gi|123444003|ref|YP_001007973.1| major cold shock protein [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|332163163|ref|YP_004299740.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|1778828|gb|AAB40924.1| major cold shock protein CSPA2 [Yersinia enterocolitica]
 gi|122090964|emb|CAL13846.1| major cold shock protein [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|318603953|emb|CBY25451.1| cold shock protein CspG [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|325667393|gb|ADZ44037.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330862836|emb|CBX72977.1| cold shock-like protein cspB [Yersinia enterocolitica W22703]
          Length = 70

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVIAL 70


>gi|108757963|ref|YP_633461.1| cold-shock protein CspB [Myxococcus xanthus DK 1622]
 gi|4193392|gb|AAD10034.1| CspB [Myxococcus xanthus]
 gi|108461843|gb|ABF87028.1| cold-shock protein CspB [Myxococcus xanthus DK 1622]
          Length = 66

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +    +G+DVF H +A+   G   L EGQ V ++  +   
Sbjct: 1  MAIGTVKWFNDAKGFGFIAQD----NGEDVFCHHTAINMDGFRTLQEGQQVEFEVTRGPK 56

Query: 62 NGKYSAENLKLV 73
               A+N++ V
Sbjct: 57 G--LQAQNVRAV 66


>gi|62180569|ref|YP_216986.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|62128202|gb|AAX65905.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|322715045|gb|EFZ06616.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
          Length = 136

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           G +KW+NP+KG+GFITP    +   DVF+H SA+ S     L E Q V +   Q   
Sbjct: 6  TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGQK 60


>gi|332140725|ref|YP_004426463.1| putative Cold shock-like protein [Alteromonas macleodii str.
          'Deep ecotype']
 gi|327550747|gb|AEA97465.1| putative Cold shock-like protein [Alteromonas macleodii str.
          'Deep ecotype']
          Length = 70

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GF+TPE     G DVF+H  ++AS G   L EGQ V+++  Q    G
Sbjct: 6  NGTVKWFNEEKGFGFLTPEA---GGKDVFVHFRSIASDGFKTLAEGQEVSFEVEQGQ-KG 61

Query: 64 KYSAENL 70
            +A  +
Sbjct: 62 PQAANVV 68


>gi|320352985|ref|YP_004194324.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
          DSM 2032]
 gi|320121487|gb|ADW17033.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
          DSM 2032]
          Length = 66

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI  E     G DVF+H SA++ +G   L EG  V ++ V +  
Sbjct: 1  MLKGTVKWFNESKGFGFIEQEA----GKDVFVHYSAISGSGFKTLNEGDKVQFEIV-DGP 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 KGPAAANVTK 65


>gi|319938152|ref|ZP_08012550.1| cold shock DNA-binding protein [Coprobacillus sp. 29_1]
 gi|319806673|gb|EFW03322.1| cold shock DNA-binding protein [Coprobacillus sp. 29_1]
          Length = 68

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+  DKG+GFIT EG      DVF+H SA+ + G   L EGQ V +D V+ D 
Sbjct: 1  MSTGKVKWFKSDKGFGFITLEGEN---KDVFVHFSAINTDGFKTLEEGQTVEFDIVEGDR 57

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 58 G--PQAANVTVI 67


>gi|297586963|ref|ZP_06945608.1| cold shock protein CspA [Finegoldia magna ATCC 53516]
 gi|297574944|gb|EFH93663.1| cold shock protein CspA [Finegoldia magna ATCC 53516]
          Length = 81

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++KW+N  KG+GFIT     E   D+F+H+SA+   G   L EGQ V+YD V+  
Sbjct: 15 IMSNGTVKWFNSTKGFGFIT----GEDNKDIFVHQSAIQQEGFRTLEEGQKVSYD-VEAS 69

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 70 EKGDRAVNVVKL 81


>gi|50952760|gb|AAT90293.1| putative cold shock protein [uncultured proteobacterium
          eBACred25D05]
          Length = 68

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI P   ++ G+DVF+H SAV  +GL  L E QLV ++ V+   
Sbjct: 1  MPQGKVKWFNTTKGFGFIEP---SDGGNDVFVHISAVQKSGLKGLAEDQLVNFELVEG-R 56

Query: 62 NGKYSAENLKL 72
          +G+  A+ L L
Sbjct: 57 DGRQMADELSL 67


>gi|91777357|ref|YP_552565.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|296159608|ref|ZP_06842431.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|91690017|gb|ABE33215.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
 gi|158187225|gb|ABW22844.1| hypothetical protein [Burkholderia sp. NCIMB 10467]
 gi|295890052|gb|EFG69847.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S ++  G   L E Q V+++  Q   
Sbjct: 1  MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGDGFKTLAENQKVSFETKQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 58 G--LQAANIKPM 67


>gi|119385865|ref|YP_916920.1| cold-shock DNA-binding domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119376460|gb|ABL71224.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
          PD1222]
          Length = 68

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE     G DVFLH SA+  AGL ++ +GQ VT++  ++  
Sbjct: 1  MANGTVKWFNAAKGFGFIAPEH---GGKDVFLHISALERAGLNSVADGQAVTFEI-ESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA  L L
Sbjct: 57 DGRESASRLAL 67


>gi|290958776|ref|YP_003489958.1| cold shock protein [Streptomyces scabiei 87.22]
 gi|260648302|emb|CBG71413.1| cold shock protein [Streptomyces scabiei 87.22]
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF H S +A++G   L EGQ VT+D  Q   
Sbjct: 1  MASGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|163760029|ref|ZP_02167113.1| cold-shock DNA-binding domain protein [Hoeflea phototrophica
          DFL-43]
 gi|162282987|gb|EDQ33274.1| cold-shock DNA-binding domain protein [Hoeflea phototrophica
          DFL-43]
          Length = 69

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K+YN  KG+GFI P+   +   DVF+H +A+  AG+  L EGQ V++D  ++  
Sbjct: 1  MQIGTVKFYNDQKGFGFIAPD---DGSKDVFVHATALERAGMRGLAEGQKVSFDTAEDRR 57

Query: 62 NGKYSAENLK 71
           GK + +N++
Sbjct: 58 TGKTAVQNIQ 67


>gi|29831319|ref|NP_825953.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|307324568|ref|ZP_07603775.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|29608434|dbj|BAC72488.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
 gi|306889812|gb|EFN20791.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 67

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATQGFRELQEGQKVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|329296326|ref|ZP_08253662.1| Cold shock-like protein cspC [Plautia stali symbiont]
          Length = 69

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLVEGQRVEFEI-QDGQKG 60

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 61 P-AAVNVTAI 69


>gi|184200633|ref|YP_001854840.1| cold shock protein [Kocuria rhizophila DC2201]
 gi|183580863|dbj|BAG29334.1| cold shock protein [Kocuria rhizophila DC2201]
          Length = 67

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFITP+ +     DVF+H S + S G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFITPDDAD---GDVFVHYSEIQSGGFRTLEENQRVEFEIGQGQK 57

Query: 62 NGKYSAENL 70
            + +   +
Sbjct: 58 GPQATGVTV 66


>gi|19551558|ref|NP_599560.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
 gi|62389205|ref|YP_224607.1| cold-shock protein CspA [Corynebacterium glutamicum ATCC 13032]
 gi|21323072|dbj|BAB97701.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032]
 gi|41324538|emb|CAF18878.1| COLD-SHOCK PROTEIN CSPA [Corynebacterium glutamicum ATCC 13032]
          Length = 67

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP+KG+GFI P   ++   DVF+H S +   G   L E QLV ++  +   
Sbjct: 1  MAQGTVKWFNPEKGFGFIAP---SDGSADVFVHYSEIEGNGFRTLEENQLVEFEIGEGAK 57

Query: 62 NGKYSAE 68
            +  A 
Sbjct: 58 GLQAQAV 64


>gi|332995286|gb|AEF05341.1| putative cold shock-like protein cspG [Alteromonas sp. SN2]
          Length = 69

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKGYGF+T +     G DVF+H  A+ S G   L EGQ V ++ V+    G
Sbjct: 5  TGTVKWFNADKGYGFLTQD---NGGKDVFVHFRAIVSDGYKTLPEGQRVEFE-VEEGQKG 60

Query: 64 KYSAEN 69
            +A  
Sbjct: 61 LQAANV 66


>gi|325278203|ref|ZP_08143698.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
 gi|324096664|gb|EGB95015.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
          Length = 70

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KGYGFITPE    SG D+F+H  A+   G  +L EGQ VT++ VQ   
Sbjct: 4  RQNGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQKVTFEAVQGQK 59

Query: 62 NGKYSAENLKL 72
               A+ +++
Sbjct: 60 G--MQADKVQV 68


>gi|294139962|ref|YP_003555940.1| stress response protein CspD [Shewanella violacea DSS12]
 gi|293326431|dbj|BAJ01162.1| stress response protein CspD [Shewanella violacea DSS12]
          Length = 73

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI P      G+DVF H SA+   G   L  GQ V Y  V+   
Sbjct: 1  MMKGTVKWFNNTKGFGFICP---GAGGEDVFAHYSAIQMEGYRTLVAGQTVEYK-VEAGP 56

Query: 62 NGKYS 66
           G ++
Sbjct: 57 KGMHA 61


>gi|254508069|ref|ZP_05120196.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus
          16]
 gi|323496408|ref|ZP_08101466.1| cold-shock protein, DNA-binding [Vibrio sinaloensis DSM 21326]
 gi|219549036|gb|EED26034.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus
          16]
 gi|323318685|gb|EGA71638.1| cold-shock protein, DNA-binding [Vibrio sinaloensis DSM 21326]
          Length = 70

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT E     G DVF+H  A+   G   L EGQ V ++  Q     
Sbjct: 6  TGTVKWFNEEKGFGFITQE---NGGADVFVHFRAITGEGFKTLAEGQKVAFEVEQGQKG- 61

Query: 64 KYSAENLKLV 73
             A N++++
Sbjct: 62 -PQAANVEVL 70


>gi|58039299|ref|YP_191263.1| cold shock protein [Gluconobacter oxydans 621H]
 gi|58001713|gb|AAW60607.1| Cold shock protein [Gluconobacter oxydans 621H]
          Length = 68

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI    S++   DVF+H SA+  AGL NL EGQ V+Y+  ++  
Sbjct: 1  MATGTVKWFNATKGFGFIQ---SSDGTTDVFVHISALEKAGLQNLNEGQQVSYEI-EDGR 56

Query: 62 NGKYSAENLKLV 73
          NG+ SA +LK +
Sbjct: 57 NGRKSAGSLKAL 68


>gi|297201136|ref|ZP_06918533.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|197713662|gb|EDY57696.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
          Length = 67

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ VT+D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|194014976|ref|ZP_03053593.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|194014002|gb|EDW23567.1| conserved domain protein [Bacillus pumilus ATCC 7061]
          Length = 66

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ + 
Sbjct: 1  MLEGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN- 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGPQAANV 63


>gi|149242120|pdb|2I5L|X Chain X, Crystal Structure Of Bacillus Subtilis Cold Shock
          Protein Variant Bs-Cspb M1rE3KK65I
          Length = 67

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ +  G
Sbjct: 3  KGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN-RG 57

Query: 64 KYSAEN 69
            +A  
Sbjct: 58 PQAANV 63


>gi|170722579|ref|YP_001750267.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida W619]
 gi|169760582|gb|ACA73898.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
          Length = 83

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G T+   D+F H SA+   G   L  GQ VT++ VQ   
Sbjct: 1  MASGKVKWFNNAKGYGFINEDGKTD---DLFAHYSAIKMDGYKTLKAGQAVTFEIVQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|134293708|ref|YP_001117444.1| cold-shock DNA-binding protein family protein [Burkholderia
          vietnamiensis G4]
 gi|134136865|gb|ABO57979.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
          G4]
          Length = 67

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+     GDD+F H S +   G   L EGQ V+Y+      
Sbjct: 1  MDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSYEV----K 53

Query: 62 NGKYSAENLKLVPK 75
           G    +   + P+
Sbjct: 54 RGPKGLQASSITPQ 67


>gi|240173035|ref|ZP_04751693.1| putative cold shock protein A [Mycobacterium kansasii ATCC 12478]
 gi|254821833|ref|ZP_05226834.1| putative cold shock protein A [Mycobacterium intracellulare ATCC
          13950]
          Length = 67

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H + +  +G   L E Q V ++   +  
Sbjct: 1  MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEIGHS-P 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPQA 61


>gi|28199264|ref|NP_779578.1| cold shock protein [Xylella fastidiosa Temecula1]
 gi|71276139|ref|ZP_00652419.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon]
 gi|71898360|ref|ZP_00680533.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|71902362|ref|ZP_00684335.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|170730633|ref|YP_001776066.1| cold-shock DNA-binding domain-containing protein [Xylella
          fastidiosa M12]
 gi|182681990|ref|YP_001830150.1| cold-shock DNA-binding domain-containing protein [Xylella
          fastidiosa M23]
 gi|28057370|gb|AAO29227.1| cold shock protein [Xylella fastidiosa Temecula1]
 gi|71163057|gb|EAO12779.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon]
 gi|71727903|gb|EAO30135.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|71731883|gb|EAO33941.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|167965426|gb|ACA12436.1| putative cold-shock DNA-binding domain protein [Xylella
          fastidiosa M12]
 gi|182632100|gb|ACB92876.1| cold-shock DNA-binding domain protein [Xylella fastidiosa M23]
 gi|307578255|gb|ADN62224.1| cold shock protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 67

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++  KG+GFI P+   +   +VF+H S + S G  +L EGQ VTYD  Q   
Sbjct: 1  MQSGTVKWFSDQKGFGFILPD---DGTPEVFVHYSGINSKGFRSLHEGQRVTYDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--PQASNITPI 67


>gi|148273662|ref|YP_001223223.1| putative cold shock protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|170783059|ref|YP_001711393.1| putative cold shock protein [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|147831592|emb|CAN02560.1| putative cold shock protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|169157629|emb|CAQ02827.1| putative cold shock protein [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 72

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTES--GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +  G++KW+N +KG+GFIT +         DVF+H SA+  +G   L EGQ V ++  Q 
Sbjct: 1  MANGTVKWFNGEKGFGFITVDAVEGGPAQQDVFVHYSAIEMSGYKVLEEGQRVAFEIGQG 60

Query: 60 DANGKYSAENLKL 72
                 AEN+ L
Sbjct: 61 SKG--LQAENVTL 71


>gi|325660793|ref|ZP_08149421.1| cold shock protein cspA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331085477|ref|ZP_08334562.1| cold shock protein cspA [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325472867|gb|EGC76077.1| cold shock protein cspA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330407715|gb|EGG87213.1| cold shock protein cspA [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 66

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW++  KGYGFI+     E+G+DVF+H S +   G   L EGQ V ++  +  A
Sbjct: 1  MNKGTVKWFSNQKGYGFIS----DEAGNDVFVHYSGLNMEGFKTLEEGQAVEFEVTEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 KGPQAINVVKL 66


>gi|94985111|ref|YP_604475.1| cold-shock DNA-binding domain-containing protein [Deinococcus
          geothermalis DSM 11300]
 gi|94555392|gb|ABF45306.1| cold-shock DNA-binding domain protein [Deinococcus geothermalis
          DSM 11300]
          Length = 89

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI          DVF+H SA+ S+G   L EG  V ++      
Sbjct: 1  MAQGRVKWFNVEKGYGFIE----HPGNPDVFVHYSAIQSSGFRKLNEGDEVEFEVEPGQG 56

Query: 62 NGKYSAENLKL 72
          N    A+N+ +
Sbjct: 57 NKGPQAKNVVV 67


>gi|126174687|ref|YP_001050836.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS155]
 gi|153000986|ref|YP_001366667.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS185]
 gi|160875699|ref|YP_001555015.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS195]
 gi|217973054|ref|YP_002357805.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS223]
 gi|304409064|ref|ZP_07390685.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
 gi|307303067|ref|ZP_07582822.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
 gi|125997892|gb|ABN61967.1| cold-shock DNA-binding protein family [Shewanella baltica OS155]
 gi|151365604|gb|ABS08604.1| putative cold-shock DNA-binding domain protein [Shewanella
          baltica OS185]
 gi|160861221|gb|ABX49755.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195]
 gi|217498189|gb|ACK46382.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223]
 gi|304352885|gb|EFM17282.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
 gi|306913427|gb|EFN43849.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
 gi|315267888|gb|ADT94741.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678]
          Length = 68

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G+DVF H S +   G   L  GQ V ++      
Sbjct: 1  MASGTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEAGPK 57

Query: 62 NGKYSA 67
              SA
Sbjct: 58 GMHASA 63


>gi|311068850|ref|YP_003973773.1| cold shock protein [Bacillus atrophaeus 1942]
 gi|310869367|gb|ADP32842.1| cold shock protein [Bacillus atrophaeus 1942]
          Length = 66

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  E     GDDVF+H SA+   G  +L EG+ V++D  Q   
Sbjct: 1  MEQGKVKWFNAEKGFGFIEREA----GDDVFVHFSAIQGEGFKSLEEGESVSFDVEQGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQASNVQ 64


>gi|295092996|emb|CBK82087.1| cold-shock DNA-binding protein family [Coprococcus sp. ART55/1]
          Length = 66

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI      E G DVF+H SA+   G   L EG  V Y+ V +  
Sbjct: 1  MKTGKVKWFNAKKGYGFIC----DEDGADVFVHFSALNMEGFKVLEEGDTVEYEVV-DGE 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 KGPQAANVTKL 66


>gi|260779178|ref|ZP_05888070.1| cold shock protein CspD [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605342|gb|EEX31637.1| cold shock protein CspD [Vibrio coralliilyticus ATCC BAA-450]
          Length = 73

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      DVF H S +   G   L  GQ VT++ V+   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGED---GDVFAHYSTIKMDGYRTLKAGQQVTFE-VEEGP 56

Query: 62 NGKYSAENLKLVPKS 76
           G +++  + +  ++
Sbjct: 57 KGYHASSVVPVEAQA 71


>gi|149377667|ref|ZP_01895403.1| cold-shock DNA-binding domain family protein [Marinobacter
          algicola DG893]
 gi|149358020|gb|EDM46506.1| cold-shock DNA-binding domain family protein [Marinobacter
          algicola DG893]
          Length = 68

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT E     G DVF+H SA+  +G   L EGQ V +   Q     
Sbjct: 5  TGTVKFFNEAKGFGFITRE----GGPDVFVHYSAIQGSGFKTLAEGQQVEFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 60 -PQAENVTAI 68


>gi|147812546|emb|CAN68380.1| hypothetical protein VITISV_018906 [Vitis vinifera]
          Length = 189

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW++  KG+GFI P+   + G+D+F+H++++ S G   L+EG+ V +  V +  +G
Sbjct: 8  TGTVKWFSGQKGFGFIAPD---DGGEDLFVHQTSIRSDGFRTLSEGETVEF-AVDHGEDG 63

Query: 64 KYSAENLKLV 73
          +  A  +  V
Sbjct: 64 RTKAVEVTAV 73


>gi|28275223|ref|NP_717259.2| cold shock domain-contain protein [Shewanella oneidensis MR-1]
          Length = 69

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P+     G D F+H  A+ S G   L EGQ V+Y+  Q    G
Sbjct: 5  TGVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSDGFKTLAEGQKVSYEVEQGQ-KG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PQAANVVVL 69


>gi|269216140|ref|ZP_06159994.1| cold shock protein B [Slackia exigua ATCC 700122]
 gi|269130399|gb|EEZ61477.1| cold shock protein B [Slackia exigua ATCC 700122]
          Length = 79

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++P+KGYGFI+       G+D+F+H S +   G   L EG  V ++     +
Sbjct: 13 MAEGTVKWFSPEKGYGFISQ----ADGEDLFVHFSEIKMDGYKTLEEGARVQFEVT-TGS 67

Query: 62 NGKYSAENLKLV 73
          NGK  A N+  +
Sbjct: 68 NGKLQASNVSPL 79


>gi|285017895|ref|YP_003375606.1| cold-shock protein [Xanthomonas albilineans GPE PC73]
 gi|283473113|emb|CBA15619.1| probable cold-shock protein [Xanthomonas albilineans]
          Length = 81

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFITPE  T+   D+F+H  A+   G  +L EGQ V++  VQ     
Sbjct: 15 QGTVKWFNDAKGFGFITPEAGTDLS-DLFVHFRAIQGTGFKSLQEGQKVSFVAVQGQKG- 72

Query: 64 KYSAENLKLV 73
             A+ +++V
Sbjct: 73 -MQADQVQVV 81


>gi|257068250|ref|YP_003154505.1| cold-shock DNA-binding protein family [Brachybacterium faecium
          DSM 4810]
 gi|256559068|gb|ACU84915.1| cold-shock DNA-binding protein family [Brachybacterium faecium
          DSM 4810]
          Length = 67

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +GS+KW+N +KGYGFI  +G    G DVF+H S +   G   L EGQ V ++  Q D 
Sbjct: 1  MAQGSVKWFNAEKGYGFIEIDG---GGADVFVHHSKIDMDGYRALDEGQRVEFEVSQGDK 57

Query: 62 NGKYSAENLKLV 73
               AE ++ +
Sbjct: 58 G--PQAEQVRPL 67


>gi|163761575|ref|ZP_02168646.1| cold shock protein [Hoeflea phototrophica DFL-43]
 gi|162281171|gb|EDQ31471.1| cold shock protein [Hoeflea phototrophica DFL-43]
          Length = 70

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI P+     G D+F+H SAV ++G+  L E Q V++D   + 
Sbjct: 1  MAETGTVKFFNVDKGFGFIKPD---NGGADIFVHISAVQASGMTGLEENQKVSFDTEPDR 57

Query: 61 ANGKYSAENLKL 72
                A NL+L
Sbjct: 58 RGKGPKAVNLRL 69


>gi|15966083|ref|NP_386436.1| putative cold shock transcription regulator protein
          [Sinorhizobium meliloti 1021]
 gi|150397438|ref|YP_001327905.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|307305637|ref|ZP_07585384.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307317640|ref|ZP_07597079.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|15075353|emb|CAC46909.1| Putative cold shock transcription regulator [Sinorhizobium
          meliloti 1021]
 gi|150028953|gb|ABR61070.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
 gi|306896798|gb|EFN27545.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306902340|gb|EFN32936.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 71

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI PE     G D+F+H SAV ++GL  LTE Q V++D   + 
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPE---NGGADIFVHISAVQASGLSGLTENQKVSFDTEPDR 57

Query: 61 ANGKYSAENLKLV 73
                A NL++V
Sbjct: 58 RGKGPKAVNLQIV 70


>gi|51244214|ref|YP_064098.1| cold-shock protein (CspB) [Desulfotalea psychrophila LSv54]
 gi|50875251|emb|CAG35091.1| probable cold-shock protein (CspB) [Desulfotalea psychrophila
          LSv54]
          Length = 66

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E     GDD+F+H +++ ++G   L EG  VT+D  Q   
Sbjct: 1  MAEGTVKWFNDAKGFGFIEQE----GGDDLFVHHTSINASGFKTLEEGARVTFDIEQGPK 56

Query: 62 NGKYSAENLKLV 73
              +A N+ ++
Sbjct: 57 G--PAAANVTVI 66


>gi|27382579|ref|NP_774108.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27355751|dbj|BAC52733.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 71

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +L EGQ +T++   + 
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLAEGQRITFEVEPDK 57

Query: 61 ANGKYSAENLKLV 73
                A NL ++
Sbjct: 58 KGKGPKAVNLVIL 70


>gi|325962239|ref|YP_004240145.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323468326|gb|ADX72011.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 68

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG+++W+N +KGYGFIT +GS   GDDVF+H SA+   G   L EGQ V  +  + + 
Sbjct: 1  MARGTVRWFNAEKGYGFITVDGS---GDDVFVHWSAIQGEGYRALDEGQRVELEVGEGEK 57

Query: 62 NGKYSAENLKLV 73
               AE+++ V
Sbjct: 58 G--PQAESVRPV 67


>gi|288941163|ref|YP_003443403.1| cold-shock DNA-binding domain-containing protein [Allochromatium
          vinosum DSM 180]
 gi|288896535|gb|ADC62371.1| cold-shock DNA-binding domain protein [Allochromatium vinosum DSM
          180]
          Length = 70

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI  E     G DVF+H SA+  AG   L EGQ VT +  Q      
Sbjct: 8  GTVKWFNDEKGYGFIERE----GGKDVFVHYSAINGAGRKTLAEGQQVTMEVTQGPKG-- 61

Query: 65 YSAENLK 71
            AEN+ 
Sbjct: 62 PQAENVT 68


>gi|150020181|ref|YP_001305535.1| cold-shock DNA-binding domain-containing protein [Thermosipho
          melanesiensis BI429]
 gi|149792702|gb|ABR30150.1| putative cold-shock DNA-binding domain protein [Thermosipho
          melanesiensis BI429]
          Length = 65

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KGYGFIT     E G+D+F+H SA+ + G   L EGQ V ++ VQ+   G
Sbjct: 2  KGTVKWFDAKKGYGFIT----KEDGEDIFVHWSAIQTEGFKTLKEGQEVEFE-VQDGQKG 56

Query: 64 KYSAENLKLV 73
            +A N+K +
Sbjct: 57 PQAA-NVKPL 65


>gi|258621691|ref|ZP_05716722.1| cold shock-like protein CspD [Vibrio mimicus VM573]
 gi|258626362|ref|ZP_05721209.1| cold shock-like protein CspD [Vibrio mimicus VM603]
 gi|262171824|ref|ZP_06039502.1| cold shock protein CspD [Vibrio mimicus MB-451]
 gi|262402499|ref|ZP_06079060.1| cold shock protein CspD [Vibrio sp. RC586]
 gi|258581414|gb|EEW06316.1| cold shock-like protein CspD [Vibrio mimicus VM603]
 gi|258585922|gb|EEW10640.1| cold shock-like protein CspD [Vibrio mimicus VM573]
 gi|261892900|gb|EEY38886.1| cold shock protein CspD [Vibrio mimicus MB-451]
 gi|262351281|gb|EEZ00414.1| cold shock protein CspD [Vibrio sp. RC586]
          Length = 73

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      D+F H S +   G   L  GQ V+Y   Q   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMDGYRTLKAGQQVSYQVEQG-P 56

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 57 KGYHASCVVPI 67


>gi|238026492|ref|YP_002910723.1| Cold-shock DNA-binding domain-containing protein [Burkholderia
          glumae BGR1]
 gi|237875686|gb|ACR28019.1| Cold-shock DNA-binding domain protein [Burkholderia glumae BGR1]
          Length = 67

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V++D V+   
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKTGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|269797859|ref|YP_003311759.1| cold-shock DNA-binding domain protein [Veillonella parvula DSM
          2008]
 gi|282848848|ref|ZP_06258238.1| cold-shock DNA-binding domain protein [Veillonella parvula ATCC
          17745]
 gi|294791752|ref|ZP_06756900.1| conserved domain protein [Veillonella sp. 6_1_27]
 gi|294793613|ref|ZP_06758750.1| conserved domain protein [Veillonella sp. 3_1_44]
 gi|269094488|gb|ACZ24479.1| cold-shock DNA-binding domain protein [Veillonella parvula DSM
          2008]
 gi|282581353|gb|EFB86746.1| cold-shock DNA-binding domain protein [Veillonella parvula ATCC
          17745]
 gi|294455183|gb|EFG23555.1| conserved domain protein [Veillonella sp. 3_1_44]
 gi|294456982|gb|EFG25344.1| conserved domain protein [Veillonella sp. 6_1_27]
          Length = 65

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KGYGFI  E     G DVF+H SA+   G  +LTEGQ V ++ V +   G 
Sbjct: 3  GKVKWFSAEKGYGFIERE----DGSDVFVHYSAIQDEGFKSLTEGQNVEFEIV-DGNRGP 57

Query: 65 YSAENLK 71
           +A  +K
Sbjct: 58 QAANVVK 64


>gi|197285535|ref|YP_002151407.1| cold shock-like protein [Proteus mirabilis HI4320]
 gi|227356030|ref|ZP_03840421.1| cold shock family protein [Proteus mirabilis ATCC 29906]
 gi|194683022|emb|CAR43496.1| cold shock-like protein [Proteus mirabilis HI4320]
 gi|227163807|gb|EEI48715.1| cold shock family protein [Proteus mirabilis ATCC 29906]
          Length = 70

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +   +N A G
Sbjct: 6  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFTI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +A    L
Sbjct: 62 PAAANVTAL 70


>gi|183984791|ref|YP_001853082.1| cold shock protein a, CspA [Mycobacterium marinum M]
 gi|183178117|gb|ACC43227.1| cold shock protein a, CspA [Mycobacterium marinum M]
          Length = 67

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFITP+   +   D+F+H S +  +G  +L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNGEKGFGFITPD---DGTKDLFVHYSEIQGSGYRSLEENQRVQFEVEQGTK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|167583194|ref|ZP_02376068.1| cold-shock DNA-binding domain protein [Burkholderia thailandensis
          TXDOH]
          Length = 67

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFITP+G    GDD+F H S +   G   L EGQ V+Y+  ++  
Sbjct: 1  MDTGTVKWFNDNKGFGFITPDG---GGDDLFAHFSEIRGDGFKTLAEGQKVSYE-TKHGP 56

Query: 62 NGKYSAENL 70
           G  ++  +
Sbjct: 57 KGLQASNIV 65


>gi|255640679|gb|ACU20624.1| unknown [Glycine max]
          Length = 170

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP    +  DD+F+H +++ S G  +L+EGQ V +  +    +G
Sbjct: 8  TGMVKWFNSQKGFGFITP---QDGTDDLFVHFTSIRSDGYRSLSEGQSVEF-LLDYGDDG 63

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 64 RTMAVDVT 71


>gi|295426499|ref|ZP_06819149.1| cold shock protein CspA [Lactobacillus amylolyticus DSM 11664]
 gi|295063867|gb|EFG54825.1| cold shock protein CspA [Lactobacillus amylolyticus DSM 11664]
          Length = 66

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N D+G+GFIT       G DVF+H S++ + G  +L EGQ V+YD  Q D 
Sbjct: 1  MQNGTVKWFNADRGFGFIT----GSDGKDVFVHFSSIKTNGFKSLEEGQKVSYDVEQED- 55

Query: 62 NGKYSAENL 70
           G  +   +
Sbjct: 56 RGPQATNVV 64


>gi|260774155|ref|ZP_05883070.1| cold shock protein CspE [Vibrio metschnikovii CIP 69.14]
 gi|260611116|gb|EEX36320.1| cold shock protein CspE [Vibrio metschnikovii CIP 69.14]
          Length = 69

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      E+G DVF H SA+ S G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNETKGFGFI----KQENGPDVFAHFSAIQSEGFRTLAEGQKVEFVITQGQKG- 60

Query: 64 KYSAENLKLV 73
             AE++K++
Sbjct: 61 -PQAESIKVL 69


>gi|256396570|ref|YP_003118134.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256362796|gb|ACU76293.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 68

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V+++  Q   
Sbjct: 1  MTDGTVKWFNAEKGFGFIEQDG---GGADVFAHFSNIAADGYRELQEGQRVSFEVTQGQK 57

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 58 G--PQAVNI 64


>gi|323483950|ref|ZP_08089323.1| hypothetical protein HMPREF9474_01072 [Clostridium symbiosum
          WAL-14163]
 gi|323693454|ref|ZP_08107665.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14673]
 gi|323402666|gb|EGA94991.1| hypothetical protein HMPREF9474_01072 [Clostridium symbiosum
          WAL-14163]
 gi|323502509|gb|EGB18360.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14673]
          Length = 66

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KG+GFI      E+G+D+F+H S +A  G  +L +GQ VTYD  Q + 
Sbjct: 1  MNKGTVKWFNSQKGFGFIC----GENGEDIFVHFSGLAMDGYKSLEDGQEVTYDIAQGNR 56

Query: 62 NGKYSAENLKL 72
               A N+ +
Sbjct: 57 G--LQAVNVSV 65


>gi|320109064|ref|YP_004184654.1| cold-shock DNA-binding domain-containing protein [Terriglobus
          saanensis SP1PR4]
 gi|319927585|gb|ADV84660.1| cold-shock DNA-binding domain protein [Terriglobus saanensis
          SP1PR4]
          Length = 67

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GF++ +    +G+DVF+H +A+ + G  +L EGQ V ++ V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFLSRD----NGEDVFVHHTAIQAQGFRSLQEGQRVEFNVVKGPK 56

Query: 62 NGKYSAENLKLV 73
             + AEN++ V
Sbjct: 57 G--WQAENVRAV 66


>gi|260467130|ref|ZP_05813309.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|259029142|gb|EEW30439.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
          Length = 68

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K+YN  KG+GFI P    + G DVF+H SA+  AG   L EGQ + ++  + DA
Sbjct: 1  MNTGTVKFYNGQKGFGFIQP---ADGGKDVFVHVSALERAGFPGLAEGQKLQFEL-ERDA 56

Query: 62 NGKYSAENLKLV 73
           G+ SA NL+L+
Sbjct: 57 KGRESAANLQLI 68


>gi|116511521|ref|YP_808737.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
          subsp. cremoris SK11]
 gi|125624635|ref|YP_001033118.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|2370256|emb|CAA71254.1| cold shock protein [Lactococcus lactis]
 gi|3850773|emb|CAA76695.1| cold shock protein B [Lactococcus lactis subsp. cremoris MG1363]
 gi|116107175|gb|ABJ72315.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
          cremoris SK11]
 gi|124493443|emb|CAL98417.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|300071426|gb|ADJ60826.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris
          NZ9000]
          Length = 66

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NPDKG+GFIT    +E G DVF H S + ++G   L EGQ VT+D      
Sbjct: 1  MTKGTVKWFNPDKGFGFIT----SEDGQDVFAHFSQIQTSGFKTLDEGQKVTFDVEAGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQAVNIE 64


>gi|224542054|ref|ZP_03682593.1| hypothetical protein CATMIT_01228 [Catenibacterium mitsuokai DSM
          15897]
 gi|224524987|gb|EEF94092.1| hypothetical protein CATMIT_01228 [Catenibacterium mitsuokai DSM
          15897]
          Length = 67

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+  +KGYGFIT EG +    D+F+H SA+ + G   L EGQ V +D V+ D   
Sbjct: 2  TGKVKWFKAEKGYGFITVEGQS---KDIFVHFSAINADGYKTLEEGQTVEFDVVEGDRG- 57

Query: 64 KYSAENLKLVP 74
             A N+ +V 
Sbjct: 58 -PQAANVTVVE 67


>gi|323486640|ref|ZP_08091961.1| hypothetical protein HMPREF9474_03712 [Clostridium symbiosum
          WAL-14163]
 gi|323692214|ref|ZP_08106457.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14673]
 gi|323400021|gb|EGA92398.1| hypothetical protein HMPREF9474_03712 [Clostridium symbiosum
          WAL-14163]
 gi|323503788|gb|EGB19607.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14673]
          Length = 66

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGFI    S E G+DVF+H S +   G  +L EG  V ++ V N A
Sbjct: 1  MNKGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLEEGAQVEFEVV-NGA 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 KGPQATNVVKL 66


>gi|170736784|ref|YP_001778044.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|169818972|gb|ACA93554.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          MC0-3]
          Length = 67

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFITP+     GDD+F H S +   G   L EGQ V+Y+  ++  
Sbjct: 1  MDTGTVKWFNDNKGFGFITPDS---GGDDLFAHFSEIRGDGFKTLAEGQKVSYE-TKHGP 56

Query: 62 NGKYSAENL 70
           G  ++  +
Sbjct: 57 KGLQASNIV 65


>gi|168334103|ref|ZP_02692316.1| cold shock protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 65

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+NP+KG+GFI  E     GDDVF+H +A+ S G   L EGQ V ++  + +   
Sbjct: 2  TGKVKWFNPEKGFGFIERE----DGDDVFVHFTAIQSEGFKTLEEGQEVEFEITEGNRG- 56

Query: 64 KYSAENLK 71
             A N+ 
Sbjct: 57 -PQASNVT 63


>gi|251789584|ref|YP_003004305.1| cold shock-like protein CspC [Dickeya zeae Ech1591]
 gi|271500505|ref|YP_003333530.1| cold-shock DNA-binding domain-containing protein [Dickeya
          dadantii Ech586]
 gi|307131152|ref|YP_003883168.1| stress protein, member of the CspA-family [Dickeya dadantii 3937]
 gi|247538205|gb|ACT06826.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591]
 gi|270344060|gb|ACZ76825.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586]
 gi|306528681|gb|ADM98611.1| stress protein, member of the CspA-family [Dickeya dadantii 3937]
          Length = 69

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 61 PSAVNVVAL 69


>gi|218902814|ref|YP_002450648.1| cold shock protein CspB [Bacillus cereus AH820]
 gi|218536202|gb|ACK88600.1| cold shock protein CspB [Bacillus cereus AH820]
          Length = 65

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI      E  DDVF+H SA+   G   L EGQ V++D  + +  G
Sbjct: 2  QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
             A  +KL
Sbjct: 57 PQVANVVKL 65


>gi|167034479|ref|YP_001669710.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida GB-1]
 gi|166860967|gb|ABY99374.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
          Length = 70

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ V++   +   
Sbjct: 4  RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAERGQ 59

Query: 62 NGKYSAEN 69
           G  +A+ 
Sbjct: 60 KGMQAAQV 67


>gi|257865337|ref|ZP_05644990.1| cold-shock protein [Enterococcus casseliflavus EC30]
 gi|257871667|ref|ZP_05651320.1| cold-shock protein [Enterococcus casseliflavus EC10]
 gi|325571430|ref|ZP_08146930.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
 gi|257799271|gb|EEV28323.1| cold-shock protein [Enterococcus casseliflavus EC30]
 gi|257805831|gb|EEV34653.1| cold-shock protein [Enterococcus casseliflavus EC10]
 gi|325155906|gb|EGC68102.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755]
          Length = 66

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+   G   L EGQ VT+D V+   
Sbjct: 1  MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQGDGFKTLEEGQAVTFD-VEEGQ 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGLQATNIVK 65


>gi|148550775|ref|YP_001260214.1| cold-shock DNA-binding protein family protein [Sphingomonas
          wittichii RW1]
 gi|148503194|gb|ABQ71447.1| cold-shock DNA-binding protein family [Sphingomonas wittichii
          RW1]
          Length = 71

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N DKGYGFI PE     G D F+H SAV  AG   L + Q ++Y+  + D  G
Sbjct: 5  TGTVKFFNADKGYGFIAPET---GGQDAFVHISAVERAGFNTLNQNQRLSYEL-ETDRRG 60

Query: 64 KYSAENLK 71
          K SA NL+
Sbjct: 61 KTSAVNLQ 68


>gi|94968551|ref|YP_590599.1| cold-shock DNA-binding protein family protein [Candidatus
          Koribacter versatilis Ellin345]
 gi|94550601|gb|ABF40525.1| cold-shock DNA-binding protein family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 66

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI      E G DVF+H SA++S G  +L EG  V ++ V+    G
Sbjct: 2  KGTVKWFNNAKGYGFI----GREEGPDVFVHYSAISSEGYKSLAEGDAVEFEIVEGQ-KG 56

Query: 64 KYSAENLK 71
            +   +K
Sbjct: 57 PQAGNVIK 64


>gi|89074299|ref|ZP_01160789.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|90578632|ref|ZP_01234442.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|89050003|gb|EAR55537.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|90439465|gb|EAS64646.1| putative Cold shock-like protein [Vibrio angustum S14]
          Length = 69

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+A  G  +L EGQ V++D  Q    G
Sbjct: 5  TGIVKWFNDEKGFGFITQD---NGGADVFVHFRAIAGEGFKSLAEGQKVSFDVEQGQ-KG 60

Query: 64 KYSAENLKL 72
            +A   ++
Sbjct: 61 PQAANVERI 69


>gi|315500325|ref|YP_004089128.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
 gi|315418337|gb|ADU14977.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
          Length = 67

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+NP+KG+GFI P+   + G+DVF+H SA+  AG   L EGQ + Y+   +  
Sbjct: 1  MAVGIVKWFNPNKGFGFIQPD---DGGNDVFVHISAIERAGWRMLVEGQKIAYEVQSD-- 55

Query: 62 NGKYSAENLK 71
           GK +A NL+
Sbjct: 56 RGKAAAVNLQ 65


>gi|116249765|ref|YP_765603.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|115254413|emb|CAK04052.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
          viciae 3841]
          Length = 68

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++  KG GFI P+   +   DVF+H SAV  AG   L +GQ + Y+ V++  
Sbjct: 1  MATGTVKWFDATKGSGFIQPD---DGSIDVFVHISAVERAGRLGLNDGQKIAYELVKDRM 57

Query: 62 NGKYSAENLK 71
          +GK SA+NL+
Sbjct: 58 SGKMSADNLQ 67


>gi|45441597|ref|NP_993136.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
 gi|51596736|ref|YP_070927.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
 gi|108807860|ref|YP_651776.1| cold shock protein [Yersinia pestis Antiqua]
 gi|108812136|ref|YP_647903.1| cold shock protein [Yersinia pestis Nepal516]
 gi|123442814|ref|YP_001008382.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|145599073|ref|YP_001163149.1| cold shock protein [Yersinia pestis Pestoides F]
 gi|149366382|ref|ZP_01888416.1| cold shock protein [Yersinia pestis CA88-4125]
 gi|165925512|ref|ZP_02221344.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165938445|ref|ZP_02227002.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|166008118|ref|ZP_02229016.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166210711|ref|ZP_02236746.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167422600|ref|ZP_02314353.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167426330|ref|ZP_02318083.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|167466596|ref|ZP_02331300.1| cold shock protein [Yersinia pestis FV-1]
 gi|170023981|ref|YP_001720486.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186895799|ref|YP_001872911.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|218928790|ref|YP_002346665.1| cold shock protein [Yersinia pestis CO92]
 gi|229841646|ref|ZP_04461804.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843763|ref|ZP_04463906.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
          195]
 gi|229894506|ref|ZP_04509688.1| cold shock protein [Yersinia pestis Pestoides A]
 gi|229902455|ref|ZP_04517574.1| cold shock protein [Yersinia pestis Nepal516]
 gi|257168075|ref|YP_003169743.1| cold shock protein [Yersinia pestis KIM 10]
 gi|270490364|ref|ZP_06207438.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|284988615|ref|YP_003422336.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
 gi|332161292|ref|YP_004297869.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|45436458|gb|AAS62013.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
 gi|51590018|emb|CAH21652.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
 gi|108775784|gb|ABG18303.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108779773|gb|ABG13831.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
 gi|115347401|emb|CAL20300.1| cold shock protein [Yersinia pestis CO92]
 gi|122089775|emb|CAL12628.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|145210769|gb|ABP40176.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|149290756|gb|EDM40831.1| cold shock protein [Yersinia pestis CA88-4125]
 gi|165913560|gb|EDR32180.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|165922621|gb|EDR39772.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165992500|gb|EDR44801.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166207891|gb|EDR52371.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166958447|gb|EDR55468.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167054685|gb|EDR64489.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|169750515|gb|ACA68033.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186698825|gb|ACC89454.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229680501|gb|EEO76598.1| cold shock protein [Yersinia pestis Nepal516]
 gi|229689371|gb|EEO81434.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
          195]
 gi|229694109|gb|EEO84157.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229703525|gb|EEO90542.1| cold shock protein [Yersinia pestis Pestoides A]
 gi|270338868|gb|EFA49645.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|318605204|emb|CBY26702.1| cold shock protein CspA [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|320014803|gb|ADV98374.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin
          35]
 gi|325665522|gb|ADZ42166.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330860359|emb|CBX70670.1| cold shock-like protein cspC [Yersinia enterocolitica W22703]
          Length = 70

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +   +N A
Sbjct: 4  MMKGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQNVQFSI-ENGA 59

Query: 62 NGKYSAENLKL 72
           G  +A    +
Sbjct: 60 KGPSAANVTAI 70


>gi|297563398|ref|YP_003682372.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296847846|gb|ADH69866.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 67

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S + + G   L EGQ V +D V    
Sbjct: 1  MATGTVKWFNGEKGFGFIEQDG---GGPDVFAHYSNIQATGYRELAEGQAVQFDAVAGAK 57

Query: 62 NGKYSAENLKLV 73
               AEN+ LV
Sbjct: 58 G--PQAENITLV 67


>gi|222054676|ref|YP_002537038.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
 gi|221563965|gb|ACM19937.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
          Length = 66

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI  E    +G+DVF+H S++   G  +L EGQ VT+D +Q  A
Sbjct: 1  MAKGVVKWFNDAKGFGFIEQE----NGEDVFVHFSSIQGDGFKSLAEGQAVTFDVIQG-A 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 KGPQAANV 63


>gi|284103679|ref|ZP_06386113.1| cold shock protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283830241|gb|EFC34486.1| cold shock protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 76

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFI  EG      DVF+H SA+   G   L EG+ V +D V+  A
Sbjct: 4  RKSGTVKWFNDRKGFGFIRVEGE----QDVFVHYSALQGEGFKTLKEGEPVEFDLVEG-A 58

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 59 KGPQAANVVK 68


>gi|254254112|ref|ZP_04947429.1| Cold shock protein [Burkholderia dolosa AUO158]
 gi|124898757|gb|EAY70600.1| Cold shock protein [Burkholderia dolosa AUO158]
          Length = 83

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+N  KG+GFI+P+     GDD+F H S +   G   L E Q V+Y+  +   
Sbjct: 17 VDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAENQKVSYEVKRGPK 73

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 74 G--LQASNITPL 83


>gi|90410344|ref|ZP_01218360.1| Putative cold shock-like protein cspG [Photobacterium profundum
          3TCK]
 gi|90328585|gb|EAS44869.1| Putative cold shock-like protein cspG [Photobacterium profundum
          3TCK]
          Length = 69

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ V+Y+  Q     
Sbjct: 5  TGTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLAEGQKVSYETEQGPKG- 60

Query: 64 KYSAENLKLV 73
             A N++ +
Sbjct: 61 -LQAANVEAI 69


>gi|291615935|ref|YP_003518677.1| CspB [Pantoea ananatis LMG 20103]
 gi|291150965|gb|ADD75549.1| CspB [Pantoea ananatis LMG 20103]
 gi|327396192|dbj|BAK13614.1| cold shock-like protein CspB [Pantoea ananatis AJ13355]
          Length = 79

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   DVF+H SA+ S+    L EGQ V +   +N   G
Sbjct: 15 TGLVKWFNADKGFGFISP---QDGSKDVFVHFSAIQSSDFKTLDEGQKVEFSI-ENGPKG 70

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 71 PSAGNVVAL 79


>gi|256822338|ref|YP_003146301.1| cold-shock DNA-binding domain-containing protein [Kangiella
          koreensis DSM 16069]
 gi|256795877|gb|ACV26533.1| cold-shock DNA-binding domain protein [Kangiella koreensis DSM
          16069]
          Length = 68

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E     G+DVF+H  A+   G   L EGQ V +D  Q    G
Sbjct: 5  TGTVKWFNESKGFGFIEQEQ----GEDVFVHFRAIQGDGFKTLAEGQRVEFDIEQG-PKG 59

Query: 64 KYSAENLKL 72
            +A   K+
Sbjct: 60 AQAANVTKV 68


>gi|15600954|ref|NP_232584.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          O1 biovar eltor str. N16961]
 gi|121586738|ref|ZP_01676521.1| cold shock DNA-binding domain protein [Vibrio cholerae 2740-80]
 gi|121728217|ref|ZP_01681251.1| cold shock DNA-binding domain protein [Vibrio cholerae V52]
 gi|147671812|ref|YP_001215928.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          O395]
 gi|153214423|ref|ZP_01949394.1| cold shock DNA-binding domain protein [Vibrio cholerae 1587]
 gi|153802359|ref|ZP_01956945.1| cold shock DNA-binding domain protein [Vibrio cholerae MZO-3]
 gi|153816780|ref|ZP_01969447.1| cold shock DNA-binding domain protein [Vibrio cholerae NCTC 8457]
 gi|153825010|ref|ZP_01977677.1| conserved domain protein [Vibrio cholerae MZO-2]
 gi|153830508|ref|ZP_01983175.1| cold shock DNA-binding domain protein [Vibrio cholerae 623-39]
 gi|227811808|ref|YP_002811818.1| cold shock DNA-binding domain protein [Vibrio cholerae M66-2]
 gi|229506650|ref|ZP_04396159.1| cold shock protein CspE [Vibrio cholerae BX 330286]
 gi|229510552|ref|ZP_04400032.1| cold shock protein CspE [Vibrio cholerae B33]
 gi|229514684|ref|ZP_04404145.1| cold shock protein CspE [Vibrio cholerae TMA 21]
 gi|229517316|ref|ZP_04406761.1| cold shock protein CspE [Vibrio cholerae RC9]
 gi|229522853|ref|ZP_04412267.1| cold shock protein CspE [Vibrio cholerae TM 11079-80]
 gi|229526190|ref|ZP_04415594.1| cold shock protein CspE [Vibrio cholerae bv. albensis VL426]
 gi|229527836|ref|ZP_04417227.1| cold shock protein CspE [Vibrio cholerae 12129(1)]
 gi|229605127|ref|YP_002875831.1| cold shock protein CspE [Vibrio cholerae MJ-1236]
 gi|254225227|ref|ZP_04918840.1| cold shock DNA-binding domain protein [Vibrio cholerae V51]
 gi|254286678|ref|ZP_04961633.1| cold shock DNA-binding domain protein [Vibrio cholerae AM-19226]
 gi|254850617|ref|ZP_05239967.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          MO10]
 gi|255746005|ref|ZP_05419952.1| cold shock protein CspE [Vibrio cholera CIRS 101]
 gi|258620062|ref|ZP_05715101.1| cold shock DNA-binding domain protein [Vibrio mimicus VM573]
 gi|258624862|ref|ZP_05719790.1| cold shock DNA-binding domain protein [Vibrio mimicus VM603]
 gi|261212646|ref|ZP_05926930.1| cold shock protein CspE [Vibrio sp. RC341]
 gi|262162157|ref|ZP_06031172.1| cold shock protein CspE [Vibrio cholerae INDRE 91/1]
 gi|262164800|ref|ZP_06032538.1| cold shock protein CspE [Vibrio mimicus VM223]
 gi|262167820|ref|ZP_06035521.1| cold shock protein CspE [Vibrio cholerae RC27]
 gi|262172987|ref|ZP_06040664.1| cold shock protein CspE [Vibrio mimicus MB-451]
 gi|262403363|ref|ZP_06079923.1| cold shock protein CspE [Vibrio sp. RC586]
 gi|297579689|ref|ZP_06941616.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          RC385]
 gi|298500039|ref|ZP_07009845.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          MAK 757]
 gi|9657576|gb|AAF96097.1| cold shock DNA-binding domain protein [Vibrio cholerae O1 biovar
          El Tor str. N16961]
 gi|121549035|gb|EAX59072.1| cold shock DNA-binding domain protein [Vibrio cholerae 2740-80]
 gi|121629540|gb|EAX61964.1| cold shock DNA-binding domain protein [Vibrio cholerae V52]
 gi|124115372|gb|EAY34192.1| cold shock DNA-binding domain protein [Vibrio cholerae 1587]
 gi|124122078|gb|EAY40821.1| cold shock DNA-binding domain protein [Vibrio cholerae MZO-3]
 gi|125622326|gb|EAZ50647.1| cold shock DNA-binding domain protein [Vibrio cholerae V51]
 gi|126512583|gb|EAZ75177.1| cold shock DNA-binding domain protein [Vibrio cholerae NCTC 8457]
 gi|146314195|gb|ABQ18735.1| cold shock DNA-binding domain protein [Vibrio cholerae O395]
 gi|148874003|gb|EDL72138.1| cold shock DNA-binding domain protein [Vibrio cholerae 623-39]
 gi|149741335|gb|EDM55369.1| conserved domain protein [Vibrio cholerae MZO-2]
 gi|150423262|gb|EDN15208.1| cold shock DNA-binding domain protein [Vibrio cholerae AM-19226]
 gi|227010950|gb|ACP07161.1| cold shock DNA-binding domain protein [Vibrio cholerae M66-2]
 gi|227014809|gb|ACP11018.1| cold shock DNA-binding domain protein [Vibrio cholerae O395]
 gi|229334198|gb|EEN99683.1| cold shock protein CspE [Vibrio cholerae 12129(1)]
 gi|229336348|gb|EEO01366.1| cold shock protein CspE [Vibrio cholerae bv. albensis VL426]
 gi|229340070|gb|EEO05078.1| cold shock protein CspE [Vibrio cholerae TM 11079-80]
 gi|229345352|gb|EEO10325.1| cold shock protein CspE [Vibrio cholerae RC9]
 gi|229348664|gb|EEO13622.1| cold shock protein CspE [Vibrio cholerae TMA 21]
 gi|229352997|gb|EEO17937.1| cold shock protein CspE [Vibrio cholerae B33]
 gi|229357001|gb|EEO21919.1| cold shock protein CspE [Vibrio cholerae BX 330286]
 gi|229371613|gb|ACQ62035.1| cold shock protein CspE [Vibrio cholerae MJ-1236]
 gi|254846322|gb|EET24736.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          MO10]
 gi|255735759|gb|EET91157.1| cold shock protein CspE [Vibrio cholera CIRS 101]
 gi|258582860|gb|EEW07681.1| cold shock DNA-binding domain protein [Vibrio mimicus VM603]
 gi|258587420|gb|EEW12130.1| cold shock DNA-binding domain protein [Vibrio mimicus VM573]
 gi|260837711|gb|EEX64388.1| cold shock protein CspE [Vibrio sp. RC341]
 gi|261890345|gb|EEY36332.1| cold shock protein CspE [Vibrio mimicus MB-451]
 gi|262023728|gb|EEY42428.1| cold shock protein CspE [Vibrio cholerae RC27]
 gi|262027180|gb|EEY45847.1| cold shock protein CspE [Vibrio mimicus VM223]
 gi|262028232|gb|EEY46890.1| cold shock protein CspE [Vibrio cholerae INDRE 91/1]
 gi|262350862|gb|EEY99995.1| cold shock protein CspE [Vibrio sp. RC586]
 gi|297535335|gb|EFH74169.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          RC385]
 gi|297542020|gb|EFH78071.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae
          MAK 757]
 gi|327485405|gb|AEA79811.1| Cold shock protein CspE [Vibrio cholerae LMA3894-4]
          Length = 69

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNETKGFGFI----KQENGPDVFAHFSAIQGDGFRTLAEGQKVEFVITQGQKG- 60

Query: 64 KYSAENLKLV 73
             AE++K++
Sbjct: 61 -PQAESIKVL 69


>gi|310829807|ref|YP_003962164.1| cold-shock protein [Eubacterium limosum KIST612]
 gi|308741541|gb|ADO39201.1| cold-shock protein [Eubacterium limosum KIST612]
          Length = 66

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFI+ E     GDDVF+H S++   G   L EG  V++D  Q   
Sbjct: 1  MNNGTVKWFNSDKGFGFISRE----EGDDVFVHFSSIMGGGFKTLNEGDKVSFDIEQGAR 56

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 57 G--LQASNVSVI 66


>gi|302543183|ref|ZP_07295525.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302460801|gb|EFL23894.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653]
          Length = 67

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIATQGFRELQEGQKVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|152999996|ref|YP_001365677.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS185]
 gi|160874617|ref|YP_001553933.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS195]
 gi|217974041|ref|YP_002358792.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS223]
 gi|304409581|ref|ZP_07391201.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
 gi|307303939|ref|ZP_07583692.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
 gi|151364614|gb|ABS07614.1| putative cold-shock DNA-binding domain protein [Shewanella
          baltica OS185]
 gi|160860139|gb|ABX48673.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195]
 gi|217499176|gb|ACK47369.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223]
 gi|304352099|gb|EFM16497.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
 gi|306912837|gb|EFN43260.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
 gi|315266858|gb|ADT93711.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678]
          Length = 69

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P+     G D F+H  A+ S G   L EGQ V++D  Q    G
Sbjct: 5  TGVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQGQ-KG 60

Query: 64 KYSAENL 70
            +A  +
Sbjct: 61 PQAANVV 67


>gi|260768159|ref|ZP_05877093.1| cold shock protein CspD [Vibrio furnissii CIP 102972]
 gi|260616189|gb|EEX41374.1| cold shock protein CspD [Vibrio furnissii CIP 102972]
 gi|315179859|gb|ADT86773.1| cold shock-like protein CspD [Vibrio furnissii NCTC 11218]
          Length = 73

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      D+F H S +   G   L  GQ V+Y+  Q   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIKMDGYRTLKAGQQVSYEVEQG-P 56

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 57 KGYHASSVVPI 67


>gi|302523728|ref|ZP_07276070.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
 gi|302432623|gb|EFL04439.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
          Length = 67

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFITP+     G DVF+H S +   G   L E   V ++  Q   
Sbjct: 1  MTEGTVKWFNSEKGFGFITPD---NGGGDVFVHYSEIQGNGFRTLEENARVQFEIGQGQK 57

Query: 62 NGKYSAENLKLV 73
               A ++ L+
Sbjct: 58 G--PQATSVSLI 67


>gi|224033259|gb|ACN35705.1| unknown [Zea mays]
          Length = 110

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
            RG++KW+N  KG+GFI+PE   +  +D+F+H+S++ S G  +L EG+ V +   +  
Sbjct: 6  RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGG 61


>gi|104781331|ref|YP_607829.1| cold-shock protein CspD [Pseudomonas entomophila L48]
 gi|95110318|emb|CAK15025.1| cold-shock protein CspD [Pseudomonas entomophila L48]
          Length = 87

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  EG  E   D+F H SA+   G   L  GQ VT++ +Q   
Sbjct: 1  MASGKVKWFNNAKGYGFINEEGKDE---DLFAHYSAIQMDGYKTLKAGQAVTFELLQG-P 56

Query: 62 NGKYSAENLK 71
           GK+ A N++
Sbjct: 57 KGKH-AVNIQ 65


>gi|2493762|sp|Q45097|CSPB_BACCE RecName: Full=Cold shock-like protein CspB
 gi|1405472|emb|CAA63608.1| CspB protein [Bacillus cereus]
          Length = 65

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFI      E  +DVF+H SA+ S G   L EGQ V++D  + +  G
Sbjct: 2  NGKVKWFNNEKGFGFIE----MEGSEDVFVHFSAIQSDGYKALEEGQEVSFDITEGN-RG 56

Query: 64 KYSAENLKL 72
            +A   KL
Sbjct: 57 PQAANVAKL 65


>gi|229031192|ref|ZP_04187201.1| Cold shock protein cspB [Bacillus cereus AH1271]
 gi|229075433|ref|ZP_04208422.1| Cold shock protein cspB [Bacillus cereus Rock4-18]
 gi|229097982|ref|ZP_04228932.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|229104067|ref|ZP_04234742.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|229117001|ref|ZP_04246383.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|228666405|gb|EEL21865.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|228679347|gb|EEL33549.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|228685419|gb|EEL39347.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|228707682|gb|EEL59866.1| Cold shock protein cspB [Bacillus cereus Rock4-18]
 gi|228730119|gb|EEL81090.1| Cold shock protein cspB [Bacillus cereus AH1271]
          Length = 66

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ VT++  Q + 
Sbjct: 1  MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGDGFKTLEEGQEVTFEVEQGNR 56

Query: 62 NGKYSAENLK 71
            + +  N K
Sbjct: 57 GPQATNVNKK 66


>gi|183396658|dbj|BAG28257.1| hypothetical protein [Desulfotignum balticum]
          Length = 67

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E   + G DVF+H S + + G  +L EG  V++D  +   
Sbjct: 1  MANGTVKWFNDAKGFGFIEQE---DGGKDVFVHHSGINAMGFKSLNEGDRVSFDISEGQR 57

Query: 62 NGKYSAENLKLV 73
              +A N+ +V
Sbjct: 58 G--PAATNVTVV 67


>gi|22124144|ref|NP_667567.1| cold shock-like protein [Yersinia pestis KIM 10]
 gi|45443633|ref|NP_995172.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
          91001]
 gi|21956899|gb|AAM83818.1|AE013622_7 cold shock-like protein [Yersinia pestis KIM 10]
 gi|45438503|gb|AAS64049.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
          91001]
          Length = 95

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 31 TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 86

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 87 PAAVNVIAL 95


>gi|89093057|ref|ZP_01166008.1| Cold shock protein [Oceanospirillum sp. MED92]
 gi|89082707|gb|EAR61928.1| Cold shock protein [Oceanospirillum sp. MED92]
          Length = 69

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI      +SG DVF H SA+A  G  +L EGQ V +   Q     
Sbjct: 6  TGTVKWFNDEKGFGFIEQ----QSGPDVFAHFSAIAGDGFKSLQEGQQVEFTVAQGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN++ +
Sbjct: 61 -PQAENIRPL 69


>gi|329941300|ref|ZP_08290579.1| cold-shock protein [Streptomyces griseoaurantiacus M045]
 gi|329299831|gb|EGG43730.1| cold-shock protein [Streptomyces griseoaurantiacus M045]
          Length = 67

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELLEGQKVSFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|302529053|ref|ZP_07281395.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
 gi|302437948|gb|EFL09764.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
          Length = 67

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+P+   +   DVF+H S +   G  +L E   V ++  Q   
Sbjct: 1  MTQGTVKWFNAEKGFGFISPD---DGSADVFVHYSEIQGNGFRSLDENARVEFEVGQGQK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|254495825|ref|ZP_05108737.1| cold shock protein CspD [Legionella drancourtii LLAP12]
 gi|254354982|gb|EET13605.1| cold shock protein CspD [Legionella drancourtii LLAP12]
          Length = 76

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N  KG+GFI PE   + GDD+F+H SA+  +G   L  GQ+VTYD  Q D 
Sbjct: 1  MARGEVKWFNNAKGWGFIIPE---QGGDDIFVHFSAIHGSGYKTLVPGQMVTYDVGQGD- 56

Query: 62 NGKYSAENL 70
           G ++A  L
Sbjct: 57 KGLHAANVL 65


>gi|312881480|ref|ZP_07741272.1| cold shock-like protein CspD [Vibrio caribbenthicus ATCC
          BAA-2122]
 gi|309370846|gb|EFP98306.1| cold shock-like protein CspD [Vibrio caribbenthicus ATCC
          BAA-2122]
          Length = 73

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      DVF H S +   G   L  GQ V ++  +   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGED---GDVFAHYSTIQMDGYRTLKAGQQVNFEVEEGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|163941162|ref|YP_001646046.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229012730|ref|ZP_04169900.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
 gi|229018744|ref|ZP_04175594.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|229024986|ref|ZP_04181415.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|229061117|ref|ZP_04198468.1| Cold shock protein cspB [Bacillus cereus AH603]
 gi|229134360|ref|ZP_04263173.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
 gi|229168275|ref|ZP_04296000.1| Cold shock protein cspB [Bacillus cereus AH621]
 gi|229174199|ref|ZP_04301734.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|163863359|gb|ABY44418.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
 gi|228609320|gb|EEK66607.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|228615101|gb|EEK72201.1| Cold shock protein cspB [Bacillus cereus AH621]
 gi|228648981|gb|EEL05003.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
 gi|228718200|gb|EEL69838.1| Cold shock protein cspB [Bacillus cereus AH603]
 gi|228736321|gb|EEL86887.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|228742550|gb|EEL92700.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|228748565|gb|EEL98420.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
          Length = 66

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G+DVF+H SA+   G  +L EGQ VT++  Q + 
Sbjct: 1  MQNGKVKWFNAEKGFGFIEVE----GGEDVFVHFSAIQGDGFKSLEEGQEVTFEVEQGNR 56

Query: 62 NGKYSAENLK 71
            + +  N K
Sbjct: 57 GPQATNVNKK 66


>gi|37525539|ref|NP_928883.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
          TTO1]
 gi|36784967|emb|CAE13885.1| cold shock protein [Photorhabdus luminescens subsp. laumondii
          TTO1]
          Length = 73

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P      G+D+F H S +   G   L  GQ V +  V    
Sbjct: 1  METGTVKWFNNAKGFGFICP---ASGGEDIFAHYSTIQMDGYRTLKAGQKVNFS-VHLGP 56

Query: 62 NGKYSAENLKL 72
           G +++  + L
Sbjct: 57 KGNHASIIVPL 67


>gi|88799572|ref|ZP_01115148.1| Cold shock protein [Reinekea sp. MED297]
 gi|88777657|gb|EAR08856.1| Cold shock protein [Reinekea sp. MED297]
          Length = 69

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H SA+   G   L EGQ VT+   Q     
Sbjct: 6  TGTVKWFNETKGFGFIEQE----NGPDVFAHFSAIQGTGFKTLAEGQKVTFTITQGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN++ V
Sbjct: 61 -PQAENIEKV 69


>gi|283785560|ref|YP_003365425.1| cold shock-like protein CspC [Citrobacter rodentium ICC168]
 gi|282949014|emb|CBG88617.1| cold shock-like protein CspC [Citrobacter rodentium ICC168]
          Length = 71

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 7  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 62

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 63 P-AAVNVTAI 71


>gi|170721149|ref|YP_001748837.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida W619]
 gi|169759152|gb|ACA72468.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
          Length = 70

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G++KW+N +KGYGFITP G    GDD+F+H  A+ S G  +L EGQ V++   +   
Sbjct: 4  RQQGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAEKGQ 59

Query: 62 NGKYSAEN 69
           G  +A+ 
Sbjct: 60 KGMQAAQV 67


>gi|260597574|ref|YP_003210145.1| Cold shock-like protein cspB [Cronobacter turicensis z3032]
 gi|260216751|emb|CBA30171.1| Cold shock-like protein cspB [Cronobacter turicensis z3032]
          Length = 70

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N DKG+GFI P   T+   DVF+H SA+ S     LTEGQ V +  V+N A G
Sbjct: 6  NGSVKWFNADKGFGFIAP---TDGSKDVFVHFSAIQSDNFRTLTEGQQVEFS-VENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVVAL 70


>gi|297563005|ref|YP_003681979.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296847453|gb|ADH69473.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 67

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG      DVF+H SA++  G  NL E Q VT+D +Q   
Sbjct: 1  MAQGTVKWFNSEKGFGFIAVEGGQ---PDVFVHYSAISGTGFRNLEEDQKVTFDIIQG-P 56

Query: 62 NGKYSAEN 69
           G  +A+ 
Sbjct: 57 KGPQAADV 64


>gi|237727875|ref|ZP_04558356.1| major cold shock protein CSPA2 [Citrobacter sp. 30_2]
 gi|226910432|gb|EEH96350.1| major cold shock protein CSPA2 [Citrobacter sp. 30_2]
          Length = 70

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP    +   DVF+H SA+ S     L EGQ V +  V+N A G
Sbjct: 6  TGLVKWFNSDKGFGFITP---QDGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-VENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVVAL 70


>gi|254381082|ref|ZP_04996447.1| cold shock protein [Streptomyces sp. Mg1]
 gi|194339992|gb|EDX20958.1| cold shock protein [Streptomyces sp. Mg1]
          Length = 67

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +G    GDDVF H S +A+ G   L EGQ VT+D  Q   
Sbjct: 1  MATGTVKWFNAAKGFGFIEQDG---GGDDVFAHFSNIAAQGFRELLEGQKVTFDIAQGQK 57

Query: 62 NGKYSAENLKL 72
              +AEN+ L
Sbjct: 58 G--PTAENIVL 66


>gi|158523075|ref|YP_001530945.1| cold-shock DNA-binding domain-containing protein [Desulfococcus
          oleovorans Hxd3]
 gi|158511901|gb|ABW68868.1| cold-shock DNA-binding domain protein [Desulfococcus oleovorans
          Hxd3]
          Length = 66

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  +    +G DVF+H SA+ ++G   L EG  VT+D V +  
Sbjct: 1  MADGIVKWFNDSKGFGFIEQD----NGPDVFVHHSAINASGFKTLNEGDRVTFDIV-DGK 55

Query: 62 NGKYSAENLKLV 73
           G  +A N+ +V
Sbjct: 56 KGPAAA-NVTVV 66


>gi|322832644|ref|YP_004212671.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|321167845|gb|ADW73544.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
          Length = 69

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +   +N A
Sbjct: 3  MMKGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQNVQFTI-ENGA 58

Query: 62 NGKYSAENLKL 72
           G  +A    +
Sbjct: 59 KGPSAANVTAI 69


>gi|253997134|ref|YP_003049198.1| cold-shock DNA-binding domain-containing protein [Methylotenera
          mobilis JLW8]
 gi|253983813|gb|ACT48671.1| cold-shock DNA-binding domain protein [Methylotenera mobilis
          JLW8]
          Length = 67

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+     GDD+F H SA+  +G  +L E + V++D   +  
Sbjct: 1  MATGLVKWFNDSKGFGFITPDA---GGDDLFAHFSAINDSGYKSLKENERVSFDVT-DGP 56

Query: 62 NGKYSAENLKLV 73
           GK  A N++ +
Sbjct: 57 KGKQ-ASNIQKI 67


>gi|238919617|ref|YP_002933132.1| cold shock-like protein CspC [Edwardsiella ictaluri 93-146]
 gi|269138905|ref|YP_003295606.1| cold shock protein [Edwardsiella tarda EIB202]
 gi|294636002|ref|ZP_06714441.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
 gi|317492183|ref|ZP_07950613.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|238869186|gb|ACR68897.1| conserved domain protein [Edwardsiella ictaluri 93-146]
 gi|267984566|gb|ACY84395.1| cold shock protein [Edwardsiella tarda EIB202]
 gi|291090679|gb|EFE23240.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
 gi|304558891|gb|ADM41555.1| Cold shock protein CspC [Edwardsiella tarda FL6-60]
 gi|316919888|gb|EFV41217.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 69

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNEAKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQHVEFEI-QDGQKG 60

Query: 64 KYSAENLKLV 73
            SA N+  +
Sbjct: 61 P-SAVNVTAI 69


>gi|260855295|ref|YP_003229186.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368]
 gi|257753944|dbj|BAI25446.1| predicted cold shock protein [Escherichia coli O26:H11 str.
          11368]
 gi|323156712|gb|EFZ42850.1| cold shock-like protein cspG [Escherichia coli EPECa14]
          Length = 71

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   DVF+H SA+ +     L EGQ VT+   +  A G
Sbjct: 6  TGLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSI-ERGAKG 61

Query: 64 KYSAENL 70
            +A  +
Sbjct: 62 PAAANVI 68


>gi|89096927|ref|ZP_01169818.1| cold shock protein [Bacillus sp. NRRL B-14911]
 gi|89088307|gb|EAR67417.1| cold shock protein [Bacillus sp. NRRL B-14911]
          Length = 66

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI     T  G DVF+H SA+   G   L EGQ V++D  +   
Sbjct: 1  MATGKVKWFNAEKGFGFIE----TSEGQDVFVHFSAIQGEGFKTLDEGQEVSFDIEEGQ- 55

Query: 62 NGKYSAENLK 71
           G  ++  +K
Sbjct: 56 RGPQASNVVK 65


>gi|254820163|ref|ZP_05225164.1| hypothetical protein MintA_09561 [Mycobacterium intracellulare
          ATCC 13950]
          Length = 67

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI P+G      DVF+H S +  +G  +L E Q V ++  Q   
Sbjct: 1  MTQGTVKWFNSDKGFGFIAPDGGE---KDVFVHHSEIQESGFRSLEENQRVQFEITQG-P 56

Query: 62 NGKYSAENLKL 72
           G  +     L
Sbjct: 57 KGPQAVGVTAL 67


>gi|300786398|ref|YP_003766689.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
 gi|299795912|gb|ADJ46287.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
          Length = 67

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +GS+KW+N +KG+GFI  +G    G DVF+H S +  +G  +L EGQ V ++  Q   
Sbjct: 1  MAQGSVKWFNGEKGFGFIAQDG---GGPDVFVHYSEIQGSGFKSLDEGQRVEFEIGQGQK 57

Query: 62 NGKYSAENLKLV 73
               A+ + ++
Sbjct: 58 G--PQAQRVSVI 67


>gi|218709066|ref|YP_002416687.1| Cold shock-like protein cspD [Vibrio splendidus LGP32]
 gi|218322085|emb|CAV18171.1| Cold shock-like protein cspD [Vibrio splendidus LGP32]
          Length = 76

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      D+F H S +   G   L  GQ V Y+ V++  
Sbjct: 4  MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMEGYRTLKAGQQVDYE-VESGP 59

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 60 KGSHASSVVPV 70


>gi|160878713|ref|YP_001557681.1| cold-shock DNA-binding domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160427379|gb|ABX40942.1| cold-shock DNA-binding domain protein [Clostridium
          phytofermentans ISDg]
          Length = 66

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KG+GFI    S E G+DVF+H S +   G  +L EGQ V ++ VQ  A
Sbjct: 1  MNKGTVKWFNNQKGFGFI----SDEQGNDVFVHYSGLNMDGFKSLEEGQEVAFEVVQG-A 55

Query: 62 NGKYSAENLKL 72
           G  +    ++
Sbjct: 56 KGPQATNVTRI 66


>gi|20135600|gb|AAM09094.1| cold-shock protein CspD [Burkholderia multivorans]
          Length = 68

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V++D V+   
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|259908938|ref|YP_002649294.1| Cold shock protein [Erwinia pyrifoliae Ep1/96]
 gi|224964560|emb|CAX56073.1| Cold shock protein [Erwinia pyrifoliae Ep1/96]
          Length = 74

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           G++KW+N  KG+GFI P G    GDD+F H S +   G   L  GQ V +D  Q    
Sbjct: 2  TGTVKWFNNAKGFGFICPVG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQGPKG 57


>gi|212709456|ref|ZP_03317584.1| hypothetical protein PROVALCAL_00497 [Providencia alcalifaciens
          DSM 30120]
 gi|261344215|ref|ZP_05971859.1| conserved domain protein [Providencia rustigianii DSM 4541]
 gi|212687794|gb|EEB47322.1| hypothetical protein PROVALCAL_00497 [Providencia alcalifaciens
          DSM 30120]
 gi|282567812|gb|EFB73347.1| conserved domain protein [Providencia rustigianii DSM 4541]
          Length = 70

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +   +N A G
Sbjct: 6  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQQVEFTI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +A    +
Sbjct: 62 PAAANVTAI 70


>gi|163749964|ref|ZP_02157208.1| putative Cold shock-like protein [Shewanella benthica KT99]
 gi|161330238|gb|EDQ01219.1| putative Cold shock-like protein [Shewanella benthica KT99]
          Length = 70

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          + G++KW+N DKG+GF+T +     G DVF+H  A+AS G   L EGQ V+++  Q +  
Sbjct: 5  NTGTVKWFNEDKGFGFLTQD---NGGADVFVHFRAIASEGFKTLDEGQKVSFEVEQGE-K 60

Query: 63 GKYSAENLKL 72
          G  ++  + L
Sbjct: 61 GLQASNVIAL 70


>gi|161520712|ref|YP_001584139.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          multivorans ATCC 17616]
 gi|189353104|ref|YP_001948731.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|221196347|ref|ZP_03569394.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
          CGD2M]
 gi|221203021|ref|ZP_03576040.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
          CGD2]
 gi|221209974|ref|ZP_03582955.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
          CGD1]
 gi|160344762|gb|ABX17847.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
          ATCC 17616]
 gi|189337126|dbj|BAG46195.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|221170662|gb|EEE03128.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
          CGD1]
 gi|221176955|gb|EEE09383.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
          CGD2]
 gi|221182901|gb|EEE15301.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans
          CGD2M]
          Length = 67

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+     GDD+F H S +   G   LT+ Q V+Y+  +   
Sbjct: 1  MDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLTDNQKVSYEVKRGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--LQASNITPL 67


>gi|111017609|ref|YP_700581.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|111025401|ref|YP_707821.1| CspA family cold-shock protein [Rhodococcus jostii RHA1]
 gi|110817139|gb|ABG92423.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|110824380|gb|ABG99663.1| cold-shock protein, CspA family protein [Rhodococcus jostii RHA1]
          Length = 67

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI P+   +   DVF+H S ++ +G  +L E Q V ++  Q   
Sbjct: 1  MAQGIVKWFNGEKGFGFIAPD---DGTPDVFVHYSEISGSGFKSLDENQRVEFEVGQGQK 57

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 58 G--PQATNVRSV 67


>gi|284043353|ref|YP_003393693.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
 gi|283947574|gb|ADB50318.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
          Length = 67

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++ DKG+GFITP+   + G D+F+H S ++  G  +L EG  V+Y+  Q D 
Sbjct: 1  MATGTVKWFSDDKGFGFITPD---DGGRDLFVHYSGISGDGYRSLPEGSKVSYEEEQGDK 57

Query: 62 NGKYSAENLKLV 73
            K  A N+  +
Sbjct: 58 GPK--AVNVTKI 67


>gi|15889479|ref|NP_355160.1| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|325293560|ref|YP_004279424.1| cold shock protein [Agrobacterium sp. H13-3]
 gi|15157349|gb|AAK87945.1| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|325061413|gb|ADY65104.1| cold shock protein [Agrobacterium sp. H13-3]
          Length = 71

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI P+     G D+F+H SAV ++GL  L+E Q V++D   + 
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPD---NGGADIFVHISAVQASGLSGLSENQKVSFDTEPDR 57

Query: 61 ANGKYSAENLKL 72
                A NL++
Sbjct: 58 RGKGPKAVNLQI 69


>gi|254441253|ref|ZP_05054746.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter
          antarcticus 307]
 gi|198251331|gb|EDY75646.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter
          antarcticus 307]
          Length = 68

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      DVF+H SAV  AGL  L + Q VT+D  ++  
Sbjct: 1  MANGTVKWFNSTKGFGFIAPEG---GSKDVFVHISAVEQAGLTGLNDDQKVTFDI-ESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N+ L
Sbjct: 57 DGRESAANIVL 67


>gi|158321201|ref|YP_001513708.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus
          oremlandii OhILAs]
 gi|158141400|gb|ABW19712.1| cold-shock DNA-binding domain protein [Alkaliphilus oremlandii
          OhILAs]
          Length = 66

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI+ +G     +DVF+H SA+   G   L EGQ V ++ V + A
Sbjct: 1  MKTGIVKWFNNEKGFGFISVQGE----EDVFVHFSAINGDGFKTLEEGQEVEFEVV-SGA 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 RGPQAANVSRI 66


>gi|304438239|ref|ZP_07398181.1| cold shock protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368846|gb|EFM22529.1| cold shock protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 72

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++ DKGYGFI+ E     GDDVF+H S++   G   L+EGQ V +D V+  A G
Sbjct: 8  TGKVKWFSADKGYGFISRE----DGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVEG-ARG 62

Query: 64 KYSAENLK 71
            +   +K
Sbjct: 63 PQADNVVK 70


>gi|304396175|ref|ZP_07378057.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|308187103|ref|YP_003931234.1| Cold shock-like protein cspC [Pantoea vagans C9-1]
 gi|304356544|gb|EFM20909.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|308057613|gb|ADO09785.1| Cold shock-like protein cspC [Pantoea vagans C9-1]
          Length = 69

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQSVEFEI-QDGQKG 60

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 61 P-AAVNVTAI 69


>gi|322436156|ref|YP_004218368.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321163883|gb|ADW69588.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 92

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 5/74 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G + W++  KG+GF++ +     G DVF+H SA+ + G  +L EG+ V++D VQ D  G 
Sbjct: 6  GKVMWFSNAKGFGFLSRD----GGADVFVHFSAIVNDGYKSLAEGEDVSFDVVQGD-KGP 60

Query: 65 YSAENLKLVPKSSN 78
           +AE  ++V  S+ 
Sbjct: 61 QAAEVRRVVMGSTQ 74


>gi|114768941|ref|ZP_01446567.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
          HTCC2255]
 gi|114549858|gb|EAU52739.1| Cold-shock DNA-binding domain protein [alpha proteobacterium
          HTCC2255]
          Length = 68

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P    + G DVF+H +AV +AGL  L + Q V+Y+  + + 
Sbjct: 1  MPNGTVKWFNGTKGYGFIAP---ADGGADVFVHITAVQAAGLQGLEDDQKVSYELEEGN- 56

Query: 62 NGKYSAENLKL 72
          NGK +A N+ L
Sbjct: 57 NGKQNATNIAL 67


>gi|15610784|ref|NP_218165.1| cold shock protein A [Mycobacterium tuberculosis H37Rv]
 gi|15843260|ref|NP_338297.1| cold-shock domain-contain protein [Mycobacterium tuberculosis
          CDC1551]
 gi|31794818|ref|NP_857311.1| cold shock protein A [Mycobacterium bovis AF2122/97]
 gi|41406521|ref|NP_959357.1| CspA_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118464580|ref|YP_879797.1| hypothetical protein MAV_0516 [Mycobacterium avium 104]
 gi|121639561|ref|YP_979785.1| putative cold shock protein A cspA [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|148663511|ref|YP_001285034.1| putative cold shock protein A [Mycobacterium tuberculosis H37Ra]
 gi|148824850|ref|YP_001289604.1| cold shock protein A cspA [Mycobacterium tuberculosis F11]
 gi|167968570|ref|ZP_02550847.1| cold shock protein A cspA [Mycobacterium tuberculosis H37Ra]
 gi|215405695|ref|ZP_03417876.1| cold shock protein A cspA [Mycobacterium tuberculosis 02_1987]
 gi|215413568|ref|ZP_03422240.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A]
 gi|215424892|ref|ZP_03422811.1| cold shock protein A cspA [Mycobacterium tuberculosis T92]
 gi|215447984|ref|ZP_03434736.1| cold shock protein A cspA [Mycobacterium tuberculosis T85]
 gi|218755426|ref|ZP_03534222.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503]
 gi|219559719|ref|ZP_03538795.1| cold shock protein A cspA [Mycobacterium tuberculosis T17]
 gi|224992058|ref|YP_002646747.1| putative cold shock protein A [Mycobacterium bovis BCG str. Tokyo
          172]
 gi|253800688|ref|YP_003033689.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 1435]
 gi|254233144|ref|ZP_04926470.1| cold shock protein A cspA [Mycobacterium tuberculosis C]
 gi|254366198|ref|ZP_04982242.1| cold shock protein A cspA [Mycobacterium tuberculosis str.
          Haarlem]
 gi|254552760|ref|ZP_05143207.1| cold shock protein A cspA [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|254773485|ref|ZP_05215001.1| putative cold shock protein A [Mycobacterium avium subsp. avium
          ATCC 25291]
 gi|260184565|ref|ZP_05762039.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A]
 gi|260198688|ref|ZP_05766179.1| cold shock protein A cspA [Mycobacterium tuberculosis T46]
 gi|260202831|ref|ZP_05770322.1| cold shock protein A cspA [Mycobacterium tuberculosis K85]
 gi|289441078|ref|ZP_06430822.1| cold shock protein A cspA [Mycobacterium tuberculosis T46]
 gi|289445242|ref|ZP_06434986.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A]
 gi|289555909|ref|ZP_06445119.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 605]
 gi|289571885|ref|ZP_06452112.1| cold shock protein A cspA [Mycobacterium tuberculosis T17]
 gi|289572295|ref|ZP_06452522.1| cold shock protein A cspA [Mycobacterium tuberculosis K85]
 gi|289747484|ref|ZP_06506862.1| cold shock protein A [Mycobacterium tuberculosis 02_1987]
 gi|289748162|ref|ZP_06507540.1| cold shock protein A cspA [Mycobacterium tuberculosis T92]
 gi|289759803|ref|ZP_06519181.1| cold shock protein A [Mycobacterium tuberculosis T85]
 gi|289763825|ref|ZP_06523203.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503]
 gi|294995441|ref|ZP_06801132.1| cold shock protein A cspA [Mycobacterium tuberculosis 210]
 gi|297636323|ref|ZP_06954103.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 4207]
 gi|297733316|ref|ZP_06962434.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN R506]
 gi|298527122|ref|ZP_07014531.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A]
 gi|306778001|ref|ZP_07416338.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu001]
 gi|306778534|ref|ZP_07416871.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu002]
 gi|306786555|ref|ZP_07424877.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu003]
 gi|306790921|ref|ZP_07429243.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu004]
 gi|306791241|ref|ZP_07429543.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu005]
 gi|306796028|ref|ZP_07434330.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu006]
 gi|306801275|ref|ZP_07437943.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu008]
 gi|306805489|ref|ZP_07442157.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu007]
 gi|306969780|ref|ZP_07482441.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu009]
 gi|306974119|ref|ZP_07486780.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu010]
 gi|307081827|ref|ZP_07490997.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu011]
 gi|307086441|ref|ZP_07495554.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu012]
 gi|313660648|ref|ZP_07817528.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN V2475]
 gi|54036917|sp|P63849|CSPA_MYCBO RecName: Full=Probable cold shock protein A
 gi|54040914|sp|P63848|CSPA_MYCTU RecName: Full=Probable cold shock protein A
 gi|2105046|emb|CAB08840.1| PROBABLE COLD SHOCK PROTEIN A CSPA [Mycobacterium tuberculosis
          H37Rv]
 gi|13883617|gb|AAK48111.1| cold-shock domain family protein [Mycobacterium tuberculosis
          CDC1551]
 gi|31620415|emb|CAD95858.1| PROBABLE COLD SHOCK PROTEIN A CSPA [Mycobacterium bovis
          AF2122/97]
 gi|41394870|gb|AAS02740.1| CspA_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165867|gb|ABK66764.1| conserved domain protein [Mycobacterium avium 104]
 gi|121495209|emb|CAL73695.1| Probable cold shock protein A cspA [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|124602937|gb|EAY61212.1| cold shock protein A cspA [Mycobacterium tuberculosis C]
 gi|134151710|gb|EBA43755.1| cold shock protein A cspA [Mycobacterium tuberculosis str.
          Haarlem]
 gi|148507663|gb|ABQ75472.1| putative cold shock protein A [Mycobacterium tuberculosis H37Ra]
 gi|148723377|gb|ABR08002.1| cold shock protein A cspA [Mycobacterium tuberculosis F11]
 gi|224775173|dbj|BAH27979.1| putative cold shock protein A [Mycobacterium bovis BCG str. Tokyo
          172]
 gi|253322191|gb|ACT26794.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 1435]
 gi|289413997|gb|EFD11237.1| cold shock protein A cspA [Mycobacterium tuberculosis T46]
 gi|289418200|gb|EFD15401.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A]
 gi|289440541|gb|EFD23034.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 605]
 gi|289536726|gb|EFD41304.1| cold shock protein A cspA [Mycobacterium tuberculosis K85]
 gi|289545639|gb|EFD49287.1| cold shock protein A cspA [Mycobacterium tuberculosis T17]
 gi|289688012|gb|EFD55500.1| cold shock protein A [Mycobacterium tuberculosis 02_1987]
 gi|289688749|gb|EFD56178.1| cold shock protein A cspA [Mycobacterium tuberculosis T92]
 gi|289711331|gb|EFD75347.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503]
 gi|289715367|gb|EFD79379.1| cold shock protein A [Mycobacterium tuberculosis T85]
 gi|298496916|gb|EFI32210.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A]
 gi|308213712|gb|EFO73111.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu001]
 gi|308328442|gb|EFP17293.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu002]
 gi|308328877|gb|EFP17728.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu003]
 gi|308332717|gb|EFP21568.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu004]
 gi|308340210|gb|EFP29061.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu005]
 gi|308343496|gb|EFP32347.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu006]
 gi|308347996|gb|EFP36847.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu007]
 gi|308351938|gb|EFP40789.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu008]
 gi|308352698|gb|EFP41549.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu009]
 gi|308356572|gb|EFP45423.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu010]
 gi|308360530|gb|EFP49381.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu011]
 gi|308364142|gb|EFP52993.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu012]
 gi|323717697|gb|EGB26898.1| cold shock protein A cspA [Mycobacterium tuberculosis CDC1551A]
 gi|326905483|gb|EGE52416.1| cold shock protein A cspA [Mycobacterium tuberculosis W-148]
 gi|328460418|gb|AEB05841.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 4207]
          Length = 67

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H + +   G   L E Q V ++   +  
Sbjct: 1  MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHS-P 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPQA 61


>gi|330446455|ref|ZP_08310107.1| cold shock domain protein CspD [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328490646|dbj|GAA04604.1| cold shock domain protein CspD [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 73

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   +   D+F H S +   G   L  GQ V Y+ VQ   
Sbjct: 1  MATGTVKWFNNAKGFGFICPE---DGEGDIFAHYSTIQMEGYRTLKAGQQVNYE-VQAGP 56

Query: 62 NGKYSAENL 70
           G +++E +
Sbjct: 57 KGYHASEIV 65


>gi|289423507|ref|ZP_06425308.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
 gi|289156009|gb|EFD04673.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
          Length = 66

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI+ +G     +DVF+H SA+   G  +L EGQ V ++ V + +
Sbjct: 1  MKVGVVKWFNNEKGFGFISVDGE----NDVFVHFSAIQGDGYKSLEEGQQVEFEIV-DGS 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGPQAANVTRV 66


>gi|225027993|ref|ZP_03717185.1| hypothetical protein EUBHAL_02262 [Eubacterium hallii DSM 3353]
 gi|224954707|gb|EEG35916.1| hypothetical protein EUBHAL_02262 [Eubacterium hallii DSM 3353]
          Length = 89

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFI      ESG D+F+H + +   G  +L EG  V +D VQ + 
Sbjct: 22 MFKGTVKWFNNQKGYGFIQ----DESGKDIFVHYTGLNMPGFKSLEEGNEVEFDIVQGE- 76

Query: 62 NGKYSAENLKL 72
           G  ++  +KL
Sbjct: 77 KGPQASNVVKL 87


>gi|118595186|ref|ZP_01552533.1| putative cold-shock protein [Methylophilales bacterium HTCC2181]
 gi|118440964|gb|EAV47591.1| putative cold-shock protein [Methylophilales bacterium HTCC2181]
          Length = 67

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITPE   + GDD+F H SA+   G  +L EG+ VT++   +  
Sbjct: 1  MATGTVKWFNDSKGFGFITPE---DGGDDLFAHFSAIVDDGYKSLKEGETVTFEVT-DGP 56

Query: 62 NGKYSAENLK 71
           GK  A N++
Sbjct: 57 KGKQ-ASNIQ 65


>gi|21222143|ref|NP_627922.1| cold-shock protein [Streptomyces coelicolor A3(2)]
 gi|256786771|ref|ZP_05525202.1| cold-shock protein [Streptomyces lividans TK24]
 gi|289770662|ref|ZP_06530040.1| cold-shock protein [Streptomyces lividans TK24]
 gi|7210998|emb|CAB76978.1| cold-shock protein [Streptomyces coelicolor A3(2)]
 gi|289700861|gb|EFD68290.1| cold-shock protein [Streptomyces lividans TK24]
          Length = 67

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S + + G   L EGQ VT+D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNINAQGFRELLEGQKVTFDIAQGQK 57

Query: 62 NGKYSAENLK 71
              +AEN+ 
Sbjct: 58 G--PTAENIT 65


>gi|330446013|ref|ZP_08309665.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490204|dbj|GAA04162.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
          Length = 69

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ V+++  Q    G
Sbjct: 5  TGTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLAEGQKVSFETEQG-PKG 60

Query: 64 KYSAENLKL 72
            +A   K+
Sbjct: 61 LQAANVEKV 69


>gi|332187928|ref|ZP_08389661.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
 gi|332012089|gb|EGI54161.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
          Length = 70

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKGYGFI+P+G    G+D F+H SAV  AG+ +L + Q + Y+  Q D
Sbjct: 1  MSMSGTVKFFNADKGYGFISPDG---GGNDAFVHISAVERAGMISLNQNQRLNYELEQ-D 56

Query: 61 ANGKYSAENLK 71
            GK SA NL+
Sbjct: 57 RRGKTSAVNLQ 67


>gi|37525773|ref|NP_929117.1| hypothetical protein plu1842 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36785202|emb|CAE14135.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 70

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +   +N A G
Sbjct: 6  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFTI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 62 PAAANVMAI 70


>gi|257874927|ref|ZP_05654580.1| cold-shock protein [Enterococcus casseliflavus EC20]
 gi|257809093|gb|EEV37913.1| cold-shock protein [Enterococcus casseliflavus EC20]
          Length = 66

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFIT     E G+DVF H SA+   G   L EGQ VT+D V+   
Sbjct: 1  MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQGEGFKTLEEGQAVTFD-VEEGQ 55

Query: 62 NGKYSAENLK 71
           G  +   +K
Sbjct: 56 RGLQATNIVK 65


>gi|156934364|ref|YP_001438280.1| hypothetical protein ESA_02195 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532618|gb|ABU77444.1| hypothetical protein ESA_02195 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 70

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N DKG+GFI P    +   DVF+H SA+ S     LTEGQ V +  V+N A G
Sbjct: 6  NGSVKWFNADKGFGFIAP---ADGSKDVFVHFSAIQSDNFRTLTEGQQVEFS-VENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVVAL 70


>gi|16124918|ref|NP_419482.1| cold-shock domain-contain protein [Caulobacter crescentus CB15]
 gi|221233638|ref|YP_002516074.1| cold shock protein [Caulobacter crescentus NA1000]
 gi|13421882|gb|AAK22650.1| cold-shock domain family protein [Caulobacter crescentus CB15]
 gi|220962810|gb|ACL94166.1| cold shock protein [Caulobacter crescentus NA1000]
          Length = 69

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P   ++   D F+H SAV  +GL ++ EGQ + Y+  ++  
Sbjct: 1  MATGTVKWFNAAKGFGFIQP---SDGSADAFVHISAVERSGLGSIDEGQKLNYELERDQR 57

Query: 62 NGKYSAENLK 71
          +GK SA  L 
Sbjct: 58 SGKMSAGQLT 67


>gi|319400562|gb|EFV88792.1| cold shock protein cspD [Staphylococcus epidermidis FRI909]
          Length = 66

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFI  +    +G+DVF+H S +A  G  +L EGQ V +D V+   
Sbjct: 1  MNNGTVKWFNADKGFGFIERD----NGNDVFVHYSGIAGEGYKSLEEGQNVDFDIVEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 57 G--EQATNVVVM 66


>gi|307313742|ref|ZP_07593360.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|306899232|gb|EFN29869.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKG+GFITPE     G DVF+H SA+   G  +L EG  V+Y+  Q+  
Sbjct: 1  MPTGTVKFFNDDKGFGFITPE---NGGTDVFVHVSALQRGG--SLKEGDKVSYEVGQDRK 55

Query: 62 NGKYSAENLKLV 73
           GK  AEN+ ++
Sbjct: 56 TGKSKAENVSVL 67


>gi|294497748|ref|YP_003561448.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|295703123|ref|YP_003596198.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294347685|gb|ADE68014.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294800782|gb|ADF37848.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 65

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KG+GFI  EG     DDVF+H SA+   G  +L EGQ VT++  ++ A
Sbjct: 1  MVQGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKSLEEGQEVTFEI-EDGA 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|225377225|ref|ZP_03754446.1| hypothetical protein ROSEINA2194_02871 [Roseburia inulinivorans
          DSM 16841]
 gi|225210929|gb|EEG93283.1| hypothetical protein ROSEINA2194_02871 [Roseburia inulinivorans
          DSM 16841]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGFI    S E G+DVF+H S +   G  +L EG  V ++ V+   
Sbjct: 1  MNKGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMEGFKSLEEGAAVEFEVVEGAK 56

Query: 62 NGKYSAENLKLV 73
               A N+ +V
Sbjct: 57 G--PQATNVTVV 66


>gi|50121319|ref|YP_050486.1| cold shock-like protein CspC [Pectobacterium atrosepticum
          SCRI1043]
 gi|85059298|ref|YP_455000.1| cold shock-like protein CspC [Sodalis glossinidius str.
          'morsitans']
 gi|227111514|ref|ZP_03825170.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
 gi|227327800|ref|ZP_03831824.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp.
          carotovorum WPP14]
 gi|253688307|ref|YP_003017497.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|261821484|ref|YP_003259590.1| cold shock-like protein CspC [Pectobacterium wasabiae WPP163]
 gi|49611845|emb|CAG75294.1| cold shock protein [Pectobacterium atrosepticum SCRI1043]
 gi|84779818|dbj|BAE74595.1| cold shock protein [Sodalis glossinidius str. 'morsitans']
 gi|251754885|gb|ACT12961.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|261605497|gb|ACX87983.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
          Length = 69

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60

Query: 64 KYSAENLKLV 73
            SA N+  +
Sbjct: 61 P-SAVNVTAL 69


>gi|117618294|ref|YP_856386.1| cold shock domain-containing protein CspD [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
 gi|117559701|gb|ABK36649.1| cold shock domain protein CspD [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
          Length = 72

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG    G+D+F H S +   G   L  GQ V ++  Q   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEG---GGEDIFAHDSTIQMEGYKTLKAGQAVNFELQQG-P 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G +++    +VP  + 
Sbjct: 57 KGNHASV---IVPNEAQ 70


>gi|291285774|ref|YP_003502592.1| Cold shock-like protein cspB [Escherichia coli O55:H7 str.
          CB9615]
 gi|331666060|ref|ZP_08366954.1| conserved domain protein [Escherichia coli TA143]
 gi|290765647|gb|ADD59608.1| Cold shock-like protein cspB [Escherichia coli O55:H7 str.
          CB9615]
 gi|331057111|gb|EGI29105.1| conserved domain protein [Escherichia coli TA143]
          Length = 71

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   DVF+H SA+ +     L EGQ VT+  V++ A G
Sbjct: 6  TGLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFS-VESGAKG 61

Query: 64 KYSAENL 70
            +A  +
Sbjct: 62 PAAANVI 68


>gi|227822821|ref|YP_002826793.1| putative cold shock protein [Sinorhizobium fredii NGR234]
 gi|227341822|gb|ACP26040.1| putative cold shock protein [Sinorhizobium fredii NGR234]
          Length = 71

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI PE     G D+F+H SAV ++GL  L+E Q V++D   + 
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPE---NGGADIFVHISAVQASGLNGLSENQKVSFDTEPDR 57

Query: 61 ANGKYSAENLKLV 73
                A NL++V
Sbjct: 58 RGKGPKAVNLQIV 70


>gi|293400346|ref|ZP_06644492.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291306746|gb|EFE47989.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI    S+E G DVF+H S +   G  +L EGQ VT++ V++D   
Sbjct: 2  KGKVKWFNAEKGYGFI----SSEDGKDVFVHYSQILQDGYKSLEEGQTVTFEAVESDKG- 56

Query: 64 KYSAENLKL 72
             A N+++
Sbjct: 57 -LQARNVEV 64


>gi|218189944|gb|EEC72371.1| hypothetical protein OsI_05633 [Oryza sativa Indica Group]
          Length = 131

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 47/70 (67%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           HRG++KW+N  KG+GFI+P+   +  +D+F+H+S++ + G  +L EG+ V +   +++ 
Sbjct: 6  RHRGTVKWFNDTKGFGFISPD---DGSEDLFVHQSSIKADGFRSLAEGEQVEFAISESE- 61

Query: 62 NGKYSAENLK 71
          +G+  A ++ 
Sbjct: 62 DGRTKAVDVT 71


>gi|189485194|ref|YP_001956135.1| cold shock RNA chaperon protein [uncultured Termite group 1
          bacterium phylotype Rs-D17]
 gi|170287153|dbj|BAG13674.1| cold shock RNA chaperon protein [uncultured Termite group 1
          bacterium phylotype Rs-D17]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KGYGFI+ +   +   DVF H SA+ S G  +L EG  V ++ V +D 
Sbjct: 1  MAQGKVKWFNDQKGYGFISND---DGSGDVFAHYSAIQSDGFKSLAEGDSVEFEIVNSDK 57

Query: 62 NGKYSAENLKLV 73
            K  A N+K +
Sbjct: 58 GPK--AANIKKI 67


>gi|290474928|ref|YP_003467812.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Xenorhabdus bovienii
          SS-2004]
 gi|300722620|ref|YP_003711910.1| cold shock protein, transcription antiterminator [Xenorhabdus
          nematophila ATCC 19061]
 gi|289174245|emb|CBJ81034.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Xenorhabdus bovienii
          SS-2004]
 gi|297629127|emb|CBJ89717.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Xenorhabdus nematophila
          ATCC 19061]
          Length = 70

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +   +N A G
Sbjct: 6  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFTI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +A    +
Sbjct: 62 PAAANVTAI 70


>gi|260772014|ref|ZP_05880931.1| putative Cold shock-like protein [Vibrio metschnikovii CIP 69.14]
 gi|260612881|gb|EEX38083.1| putative Cold shock-like protein [Vibrio metschnikovii CIP 69.14]
          Length = 70

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GF++ +     G DVF+H +A+AS G   L EGQ V++  V+N   G
Sbjct: 6  TGTVKWFNETKGFGFLSQD---NGGADVFVHFNAIASEGFKTLIEGQKVSF-VVENGQKG 61

Query: 64 KYSAENLKL 72
            +A+ + L
Sbjct: 62 LQAAQVVTL 70


>gi|118443638|ref|YP_878429.1| cold shock protein -related protein [Clostridium novyi NT]
 gi|168186566|ref|ZP_02621201.1| conserved domain protein [Clostridium botulinum C str. Eklund]
 gi|118134094|gb|ABK61138.1| cold shock protein -related protein [Clostridium novyi NT]
 gi|169295395|gb|EDS77528.1| conserved domain protein [Clostridium botulinum C str. Eklund]
          Length = 65

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT    TE G+DVF H S +   G   L EGQ V++D V+     
Sbjct: 2  TGTVKWFNAEKGFGFIT----TEEGNDVFAHFSQINKDGFKTLEEGQNVSFDVVEGAKG- 56

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 57 -PQAENISVL 65


>gi|53720168|ref|YP_109154.1| cold shock-like protein [Burkholderia pseudomallei K96243]
 gi|76811439|ref|YP_334418.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|83720914|ref|YP_442133.1| cold-shock domain-contain protein [Burkholderia thailandensis
          E264]
 gi|126441090|ref|YP_001059958.1| cold-shock domain-contain protein [Burkholderia pseudomallei 668]
 gi|126452235|ref|YP_001067250.1| cold-shock domain-contain protein [Burkholderia pseudomallei
          1106a]
 gi|167581004|ref|ZP_02373878.1| cold-shock domain family protein [Burkholderia thailandensis
          TXDOH]
 gi|167619082|ref|ZP_02387713.1| cold-shock domain family protein [Burkholderia thailandensis Bt4]
 gi|167720733|ref|ZP_02403969.1| cold-shock domain family protein [Burkholderia pseudomallei DM98]
 gi|167739716|ref|ZP_02412490.1| cold-shock domain family protein [Burkholderia pseudomallei 14]
 gi|167816920|ref|ZP_02448600.1| cold-shock domain family protein [Burkholderia pseudomallei 91]
 gi|167825323|ref|ZP_02456794.1| cold-shock domain family protein [Burkholderia pseudomallei 9]
 gi|167846825|ref|ZP_02472333.1| cold-shock domain family protein [Burkholderia pseudomallei
          B7210]
 gi|167895416|ref|ZP_02482818.1| cold-shock domain family protein [Burkholderia pseudomallei 7894]
 gi|167903800|ref|ZP_02491005.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC
          13177]
 gi|167912067|ref|ZP_02499158.1| cold-shock domain family protein [Burkholderia pseudomallei 112]
 gi|167920041|ref|ZP_02507132.1| cold-shock domain family protein [Burkholderia pseudomallei
          BCC215]
 gi|217421179|ref|ZP_03452684.1| cold shock family protein [Burkholderia pseudomallei 576]
 gi|226193900|ref|ZP_03789502.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9]
 gi|226197837|ref|ZP_03793411.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9]
 gi|237813374|ref|YP_002897825.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|242316730|ref|ZP_04815746.1| cold shock family protein [Burkholderia pseudomallei 1106b]
 gi|254181035|ref|ZP_04887633.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
 gi|52210582|emb|CAH36565.1| cold shock-like protein [Burkholderia pseudomallei K96243]
 gi|76580892|gb|ABA50367.1| cold shock transcription regulator protein [Burkholderia
          pseudomallei 1710b]
 gi|83654739|gb|ABC38802.1| cold-shock domain family protein-related protein [Burkholderia
          thailandensis E264]
 gi|126220583|gb|ABN84089.1| cold shock family protein [Burkholderia pseudomallei 668]
 gi|126225877|gb|ABN89417.1| cold shock family protein [Burkholderia pseudomallei 1106a]
 gi|184211574|gb|EDU08617.1| cold-shock domain family protein [Burkholderia pseudomallei 1655]
 gi|217396591|gb|EEC36608.1| cold shock family protein [Burkholderia pseudomallei 576]
 gi|225930025|gb|EEH26038.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9]
 gi|225934205|gb|EEH30190.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9]
 gi|237503488|gb|ACQ95806.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|242139969|gb|EES26371.1| cold shock family protein [Burkholderia pseudomallei 1106b]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V+++ V+   
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMEGFKTLKENQRVSFE-VKTGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|119776095|ref|YP_928835.1| cold-shock DNA-binding domain-containing protein [Shewanella
          amazonensis SB2B]
 gi|119768595|gb|ABM01166.1| cold-shock DNA-binding protein family [Shewanella amazonensis
          SB2B]
          Length = 70

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFITP+     G DVF+H  A+A  G   L EGQ V ++  Q +   
Sbjct: 6  TGSVKWFNETKGFGFITPD---NGGADVFVHFRAIAVDGFKTLAEGQQVQFNVEQGNKG- 61

Query: 64 KYSAENLKLV 73
             A N+ L+
Sbjct: 62 -PQAANVTLL 70


>gi|228908166|ref|ZP_04072014.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|229017742|ref|ZP_04174631.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|229023958|ref|ZP_04180438.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|229096909|ref|ZP_04227878.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|229103017|ref|ZP_04233706.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|229115898|ref|ZP_04245295.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|229161370|ref|ZP_04289355.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|229173122|ref|ZP_04300673.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|228610455|gb|EEK67726.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|228622184|gb|EEK79025.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|228667560|gb|EEL23005.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|228680432|gb|EEL34620.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|228686519|gb|EEL40428.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|228737336|gb|EEL87851.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|228743558|gb|EEL93669.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|228851584|gb|EEM96390.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI        G+DVF+H SA+   G  +L EGQ V+++ V++ 
Sbjct: 1  MTLTGKVKWFNSEKGFGFIE----VADGNDVFVHFSAITGDGFKSLDEGQEVSFE-VEDG 55

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 56 NRGPQAKNVVKL 67


>gi|254492515|ref|ZP_05105687.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
          thiooxidans DMS010]
 gi|224462407|gb|EEF78684.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
          thiooxydans DMS010]
          Length = 68

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF H S +   G   L EGQ V +   Q     
Sbjct: 5  TGTVKWFNEAKGFGFIEQE----SGPDVFAHFSQIKGDGFRTLNEGQRVEFTVTQGAKG- 59

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 60 -PQAENITAL 68


>gi|146283032|ref|YP_001173185.1| cold shock protein CspA [Pseudomonas stutzeri A1501]
 gi|145571237|gb|ABP80343.1| cold shock protein CspA [Pseudomonas stutzeri A1501]
          Length = 136

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++KW+N  KGYGFI       +G DVF+H  A+   G  +L EGQ V +  +Q   
Sbjct: 71  RETGTVKWFNDAKGYGFIQ----RGNGADVFVHYRAIRGDGHRSLAEGQQVEFSVIQGQK 126

Query: 62  NGKYSAENL 70
                AE++
Sbjct: 127 G--LQAEDV 133


>gi|303229892|ref|ZP_07316668.1| cold shock protein CspB [Veillonella atypica ACS-134-V-Col7a]
 gi|303232195|ref|ZP_07318898.1| cold shock protein CspB [Veillonella atypica ACS-049-V-Sch6]
 gi|302513301|gb|EFL55340.1| cold shock protein CspB [Veillonella atypica ACS-049-V-Sch6]
 gi|302515448|gb|EFL57414.1| cold shock protein CspB [Veillonella atypica ACS-134-V-Col7a]
          Length = 65

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KGYGFI  E     G DVF+H SA+   G  +L+EGQ VT+D V +   G 
Sbjct: 3  GKVKWFSAEKGYGFIERE----DGSDVFVHFSAIQDEGFKSLSEGQNVTFDIV-DGNRGP 57

Query: 65 YSAENLK 71
           +A  +K
Sbjct: 58 QAANVVK 64


>gi|228991370|ref|ZP_04151325.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
 gi|228997469|ref|ZP_04157086.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|229008676|ref|ZP_04166076.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
 gi|228752529|gb|EEM02157.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
 gi|228762265|gb|EEM11194.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|228768300|gb|EEM16908.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI  E     G DVF+H SA+   G  +L EGQ V+++  + +
Sbjct: 1  MTLTGKVKWFNSEKGFGFIEVE----DGSDVFVHFSAITGEGFKSLDEGQEVSFEVEEGN 56

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 57 -RGPQAKNVVKL 67


>gi|15838943|ref|NP_299631.1| cold shock protein [Xylella fastidiosa 9a5c]
 gi|9107526|gb|AAF85151.1|AE004045_9 cold shock protein [Xylella fastidiosa 9a5c]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++  KG+GFI+P+   +   +VF H S + S G  +L EGQ VTYD  Q   
Sbjct: 1  MQSGTVKWFSDQKGFGFISPD---DGTPEVFAHYSGINSKGFRSLHEGQRVTYDVTQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--PQASNITPI 67


>gi|16129516|ref|NP_416075.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. MG1655]
 gi|89108399|ref|AP_002179.1| cold shock protein [Escherichia coli str. K-12 substr. W3110]
 gi|170020092|ref|YP_001725046.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli ATCC 8739]
 gi|170081225|ref|YP_001730545.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|193066912|ref|ZP_03047881.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194436474|ref|ZP_03068575.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|218554119|ref|YP_002387032.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
 gi|218699873|ref|YP_002407502.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
 gi|218705059|ref|YP_002412578.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
 gi|238900777|ref|YP_002926573.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
 gi|293405060|ref|ZP_06649052.1| cold shock-like protein cspB [Escherichia coli FVEC1412]
 gi|298380705|ref|ZP_06990304.1| cold shock-like protein cspB [Escherichia coli FVEC1302]
 gi|300899666|ref|ZP_07117897.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300903929|ref|ZP_07121824.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300919925|ref|ZP_07136387.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300938348|ref|ZP_07153102.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|301025117|ref|ZP_07188711.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|301306487|ref|ZP_07212553.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|301326428|ref|ZP_07219780.1| transcriptional repressor activity CueR [Escherichia coli MS
          78-1]
 gi|301647720|ref|ZP_07247513.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|307138212|ref|ZP_07497568.1| cold shock protein; Qin prophage [Escherichia coli H736]
 gi|307310877|ref|ZP_07590523.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|312969569|ref|ZP_07783752.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|331642145|ref|ZP_08343280.1| conserved domain protein [Escherichia coli H736]
 gi|331652935|ref|ZP_08353940.1| conserved domain protein [Escherichia coli M718]
 gi|544108|sp|P36995|CSPB_ECOLI RecName: Full=Cold shock-like protein CspB; Short=CSP-B
 gi|479003|gb|AAA23618.1| cold-shock protein [Escherichia coli]
 gi|1742552|dbj|BAA15256.1| cold shock protein [Escherichia coli str. K12 substr. W3110]
 gi|1787839|gb|AAC74630.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. MG1655]
 gi|2226341|gb|AAB61739.1| CspB [Escherichia coli str. K-12 substr. W3110]
 gi|169755020|gb|ACA77719.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|169889060|gb|ACB02767.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|192959502|gb|EDV89936.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194424506|gb|EDX40492.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|218360887|emb|CAQ98457.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
 gi|218369859|emb|CAR17633.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
 gi|218432156|emb|CAR13044.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
 gi|238863368|gb|ACR65366.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
 gi|260449320|gb|ACX39742.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|284921462|emb|CBG34531.1| cold shock-like protein [Escherichia coli 042]
 gi|291427268|gb|EFF00295.1| cold shock-like protein cspB [Escherichia coli FVEC1412]
 gi|298278147|gb|EFI19661.1| cold shock-like protein cspB [Escherichia coli FVEC1302]
 gi|300356791|gb|EFJ72661.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300396226|gb|EFJ79764.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|300404089|gb|EFJ87627.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300413046|gb|EFJ96356.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300456684|gb|EFK20177.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|300838293|gb|EFK66053.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|300846844|gb|EFK74604.1| transcriptional repressor activity CueR [Escherichia coli MS
          78-1]
 gi|301074155|gb|EFK88961.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|306909055|gb|EFN39551.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|310337854|gb|EFQ02943.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|312946160|gb|ADR26987.1| Qin prophage; cold shock protein [Escherichia coli O83:H1 str.
          NRG 857C]
 gi|315060857|gb|ADT75184.1| Qin prophage; cold shock protein [Escherichia coli W]
 gi|315136198|dbj|BAJ43357.1| cold shock-like protein cspB [Escherichia coli DH1]
 gi|315253261|gb|EFU33229.1| transcriptional repressor activity CueR [Escherichia coli MS
          85-1]
 gi|320197745|gb|EFW72353.1| Cold shock protein CspB [Escherichia coli EC4100B]
 gi|320643977|gb|EFX13064.1| Qin prophage; cold shock protein [Escherichia coli O157:H- str.
          493-89]
 gi|320649406|gb|EFX17948.1| Qin prophage; cold shock protein [Escherichia coli O157:H- str. H
          2687]
 gi|320660405|gb|EFX27873.1| Qin prophage; cold shock protein [Escherichia coli O55:H7 str.
          USDA 5905]
 gi|323169849|gb|EFZ55505.1| cold shock-like protein cspG [Escherichia coli LT-68]
 gi|323185905|gb|EFZ71262.1| cold shock-like protein cspG [Escherichia coli 1357]
 gi|323378572|gb|ADX50840.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323942036|gb|EGB38214.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323947934|gb|EGB43929.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323973801|gb|EGB68975.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|331038943|gb|EGI11163.1| conserved domain protein [Escherichia coli H736]
 gi|331049033|gb|EGI21105.1| conserved domain protein [Escherichia coli M718]
 gi|332343266|gb|AEE56600.1| cold shock-like protein CspG [Escherichia coli UMNK88]
          Length = 71

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   DVF+H SA+ +     L EGQ VT+   ++ A G
Sbjct: 6  TGLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSI-ESGAKG 61

Query: 64 KYSAENL 70
            +A  +
Sbjct: 62 PAAANVI 68


>gi|331269838|ref|YP_004396330.1| cold shock protein [Clostridium botulinum BKT015925]
 gi|329126388|gb|AEB76333.1| cold shock protein [Clostridium botulinum BKT015925]
          Length = 65

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT    TE G+DVF H S +   G   L EGQ V++D V+     
Sbjct: 2  TGTVKWFNAEKGFGFIT----TEEGNDVFAHFSQINKEGFKTLEEGQNVSFDVVEGAKG- 56

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 57 -PQAENITIL 65


>gi|220911667|ref|YP_002486976.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|219858545|gb|ACL38887.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
          Length = 68

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGFIT +GS   GDD+F+H SA+   G   L EGQ V  +  + + 
Sbjct: 1  MALGTVKWFNAEKGYGFITVDGS---GDDIFVHWSAIQGEGYRALDEGQRVELEVGEGEK 57

Query: 62 NGKYSAENLK 71
               AE+++
Sbjct: 58 G--PQAESVR 65


>gi|149276323|ref|ZP_01882467.1| stress protein, member of the CspA-family [Pedobacter sp. BAL39]
 gi|149232843|gb|EDM38218.1| stress protein, member of the CspA-family [Pedobacter sp. BAL39]
          Length = 68

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N  KG+GFITPE     G D+F+H SA+A      L EG  V ++   + 
Sbjct: 1  MRTTGKVKWFNSAKGFGFITPE---NGGKDIFVHFSAIAGDSFRELNEGDSVEFEL-NDG 56

Query: 61 ANGKYSAENLKLV 73
            G  +A N+ ++
Sbjct: 57 KKGPEAA-NVTVL 68


>gi|37725749|gb|AAO32343.1| cold shock protein 3 [Streptomyces sp. AA8321]
          Length = 65

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +     G DVF H S + ++G  +L E Q V ++  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIEQDT---GGPDVFAHYSNIRASGFRSLEEAQRVEFNVTQGQK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENVS 65


>gi|30021641|ref|NP_833272.1| cold shock protein [Bacillus cereus ATCC 14579]
 gi|30263487|ref|NP_845864.1| cold shock protein CspB [Bacillus anthracis str. Ames]
 gi|42782603|ref|NP_979850.1| cold shock protein CspB [Bacillus cereus ATCC 10987]
 gi|47528880|ref|YP_020229.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor']
 gi|47569978|ref|ZP_00240642.1| cold-shock domain family protein-related protein [Bacillus cereus
          G9241]
 gi|49186338|ref|YP_029590.1| cold shock protein CspB [Bacillus anthracis str. Sterne]
 gi|49479281|ref|YP_037619.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|52141994|ref|YP_084834.1| cold shock protein [Bacillus cereus E33L]
 gi|118478788|ref|YP_895939.1| cold-shock DNA-binding protein family protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|167637065|ref|ZP_02395345.1| cold shock protein CspB [Bacillus anthracis str. A0193]
 gi|190564523|ref|ZP_03017444.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I]
 gi|196034229|ref|ZP_03101639.1| cold shock protein CspB [Bacillus cereus W]
 gi|196038347|ref|ZP_03105656.1| cold shock protein CspB [Bacillus cereus NVH0597-99]
 gi|196043023|ref|ZP_03110262.1| cold shock protein CspB [Bacillus cereus 03BB108]
 gi|206969007|ref|ZP_03229962.1| cold shock protein CspB [Bacillus cereus AH1134]
 gi|206975495|ref|ZP_03236408.1| cold shock protein CspB [Bacillus cereus H3081.97]
 gi|217960932|ref|YP_002339500.1| cold shock protein CspB [Bacillus cereus AH187]
 gi|218232785|ref|YP_002368351.1| cold shock protein CspB [Bacillus cereus B4264]
 gi|218898630|ref|YP_002447041.1| cold shock protein CspB [Bacillus cereus G9842]
 gi|218904664|ref|YP_002452498.1| cold shock protein CspB [Bacillus cereus AH820]
 gi|222096990|ref|YP_002531047.1| cold shock protein [Bacillus cereus Q1]
 gi|225865502|ref|YP_002750880.1| cold shock protein CspB [Bacillus cereus 03BB102]
 gi|227813634|ref|YP_002813643.1| cold shock protein CspB [Bacillus anthracis str. CDC 684]
 gi|228902007|ref|ZP_04066172.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|228912180|ref|ZP_04075895.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|228916152|ref|ZP_04079722.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228922246|ref|ZP_04085553.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228928576|ref|ZP_04091613.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228934813|ref|ZP_04097644.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228940621|ref|ZP_04103187.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228947154|ref|ZP_04109448.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228953805|ref|ZP_04115844.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228959724|ref|ZP_04121399.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228969486|ref|ZP_04130298.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228973540|ref|ZP_04134124.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228980099|ref|ZP_04140415.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|228986625|ref|ZP_04146756.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229047204|ref|ZP_04192818.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|229071035|ref|ZP_04204261.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|229080742|ref|ZP_04213260.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
 gi|229092502|ref|ZP_04223658.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
 gi|229110960|ref|ZP_04240521.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
 gi|229123055|ref|ZP_04252262.1| Cold shock protein cspB [Bacillus cereus 95/8201]
 gi|229128809|ref|ZP_04257786.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
 gi|229140143|ref|ZP_04268701.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
 gi|229146104|ref|ZP_04274481.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|229151732|ref|ZP_04279933.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|229159169|ref|ZP_04287204.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
 gi|229162371|ref|ZP_04290334.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|229179821|ref|ZP_04307168.1| Cold shock protein cspB [Bacillus cereus 172560W]
 gi|229185756|ref|ZP_04312933.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
 gi|229191625|ref|ZP_04318604.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|229197647|ref|ZP_04324368.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|229600528|ref|YP_002867733.1| cold shock protein CspB [Bacillus anthracis str. A0248]
 gi|254686104|ref|ZP_05149963.1| cold shock protein CspB [Bacillus anthracis str. CNEVA-9066]
 gi|254723505|ref|ZP_05185293.1| cold shock protein CspB [Bacillus anthracis str. A1055]
 gi|254738577|ref|ZP_05196280.1| cold shock protein CspB [Bacillus anthracis str. Western North
          America USA6153]
 gi|254744864|ref|ZP_05202542.1| cold shock protein CspB [Bacillus anthracis str. Kruger B]
 gi|296504044|ref|YP_003665744.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|300117665|ref|ZP_07055447.1| cold shock protein CspB [Bacillus cereus SJ1]
 gi|301055025|ref|YP_003793236.1| cold shock protein [Bacillus anthracis CI]
 gi|29897196|gb|AAP10473.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gi|30258122|gb|AAP27350.1| cold shock protein CspB [Bacillus anthracis str. Ames]
 gi|42738529|gb|AAS42458.1| cold shock protein CspB [Bacillus cereus ATCC 10987]
 gi|47504028|gb|AAT32704.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor']
 gi|47553376|gb|EAL11763.1| cold-shock domain family protein-related protein [Bacillus cereus
          G9241]
 gi|49180265|gb|AAT55641.1| cold shock protein CspB [Bacillus anthracis str. Sterne]
 gi|49330837|gb|AAT61483.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|51975463|gb|AAU17013.1| cold shock protein [Bacillus cereus E33L]
 gi|118418013|gb|ABK86432.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
          str. Al Hakam]
 gi|167514572|gb|EDR89938.1| cold shock protein CspB [Bacillus anthracis str. A0193]
 gi|190563840|gb|EDV17804.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I]
 gi|195993303|gb|EDX57261.1| cold shock protein CspB [Bacillus cereus W]
 gi|196026507|gb|EDX65175.1| cold shock protein CspB [Bacillus cereus 03BB108]
 gi|196030755|gb|EDX69353.1| cold shock protein CspB [Bacillus cereus NVH0597-99]
 gi|206736048|gb|EDZ53206.1| cold shock protein CspB [Bacillus cereus AH1134]
 gi|206746397|gb|EDZ57791.1| cold shock protein CspB [Bacillus cereus H3081.97]
 gi|217063996|gb|ACJ78246.1| cold shock protein CspB [Bacillus cereus AH187]
 gi|218160742|gb|ACK60734.1| cold shock protein CspB [Bacillus cereus B4264]
 gi|218538592|gb|ACK90990.1| cold shock protein CspB [Bacillus cereus AH820]
 gi|218542988|gb|ACK95382.1| cold shock protein CspB [Bacillus cereus G9842]
 gi|221241048|gb|ACM13758.1| cold shock protein [Bacillus cereus Q1]
 gi|225790203|gb|ACO30420.1| cold shock protein CspB [Bacillus cereus 03BB102]
 gi|227002717|gb|ACP12460.1| cold shock protein CspB [Bacillus anthracis str. CDC 684]
 gi|228585836|gb|EEK43933.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|228591787|gb|EEK49627.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|228597728|gb|EEK55371.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1]
 gi|228603650|gb|EEK61124.1| Cold shock protein cspB [Bacillus cereus 172560W]
 gi|228621055|gb|EEK77918.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|228624303|gb|EEK81095.1| Cold shock protein cspB [Bacillus cereus ATCC 4342]
 gi|228631793|gb|EEK88421.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|228637444|gb|EEK93897.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|228643229|gb|EEK99502.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26]
 gi|228654697|gb|EEL10558.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
 gi|228660349|gb|EEL15982.1| Cold shock protein cspB [Bacillus cereus 95/8201]
 gi|228672541|gb|EEL27824.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
 gi|228690789|gb|EEL44564.1| Cold shock protein cspB [Bacillus cereus Rock3-42]
 gi|228702476|gb|EEL54944.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
 gi|228711975|gb|EEL63924.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|228724165|gb|EEL75508.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|228773110|gb|EEM21545.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228779685|gb|EEM27936.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|228786235|gb|EEM34230.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228790229|gb|EEM37999.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228799854|gb|EEM46796.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228805773|gb|EEM52353.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228812401|gb|EEM58728.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228819127|gb|EEM65186.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228824713|gb|EEM70514.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228831088|gb|EEM76688.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228837301|gb|EEM82635.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228843350|gb|EEM88428.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228847517|gb|EEM92456.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|228857593|gb|EEN02088.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|229264936|gb|ACQ46573.1| cold shock protein CspB [Bacillus anthracis str. A0248]
 gi|296325096|gb|ADH08024.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|298724998|gb|EFI65658.1| cold shock protein CspB [Bacillus cereus SJ1]
 gi|300377194|gb|ADK06098.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
 gi|324327436|gb|ADY22696.1| cold shock protein CspB [Bacillus thuringiensis serovar finitimus
          YBT-020]
 gi|326941254|gb|AEA17150.1| cold shock protein [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 66

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ VT++  Q + 
Sbjct: 1  MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNR 56

Query: 62 NGKYSAENLK 71
            + +  N K
Sbjct: 57 GPQATNVNKK 66


>gi|300121901|emb|CBK22475.2| Cold-shock protein DNA-binding [Blastocystis hominis]
          Length = 101

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V+ G  KW+N  KGYGFI P+  ++   D+F+H+S++ S+G   L EG+ V +D   +  
Sbjct: 22 VYTGKCKWFNNKKGYGFIIPDPGSDLTTDIFVHQSSIKSSGFRFLKEGESVEFDVT-DGQ 80

Query: 62 NGKYSAEN 69
           GK +   
Sbjct: 81 KGKVATNV 88


>gi|15802236|ref|NP_288259.1| cold shock-like protein CspC [Escherichia coli O157:H7 EDL933]
 gi|15831787|ref|NP_310560.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
          Sakai]
 gi|16129777|ref|NP_416337.1| stress protein, member of the CspA-family [Escherichia coli str.
          K-12 substr. MG1655]
 gi|16760726|ref|NP_456343.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|16765178|ref|NP_460793.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|26248085|ref|NP_754125.1| cold shock-like protein CspC [Escherichia coli CFT073]
 gi|29141516|ref|NP_804858.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|30062921|ref|NP_837092.1| cold shock-like protein CspC [Shigella flexneri 2a str. 2457T]
 gi|56413244|ref|YP_150319.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62180401|ref|YP_216818.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|74311864|ref|YP_310283.1| cold shock-like protein CspC [Shigella sonnei Ss046]
 gi|82777211|ref|YP_403560.1| cold shock-like protein CspC [Shigella dysenteriae Sd197]
 gi|89108662|ref|AP_002442.1| stress protein, member of the CspA-family [Escherichia coli str.
          K-12 substr. W3110]
 gi|91211042|ref|YP_541028.1| cold shock-like protein CspC [Escherichia coli UTI89]
 gi|110641940|ref|YP_669670.1| cold shock-like protein CspC [Escherichia coli 536]
 gi|110805383|ref|YP_688903.1| cold shock-like protein CspC [Shigella flexneri 5 str. 8401]
 gi|146312039|ref|YP_001177113.1| cold shock-like protein CspC [Enterobacter sp. 638]
 gi|152970887|ref|YP_001335996.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
 gi|157145410|ref|YP_001452730.1| cold shock-like protein CspC [Citrobacter koseri ATCC BAA-895]
 gi|157157347|ref|YP_001463124.1| cold shock-like protein CspC [Escherichia coli E24377A]
 gi|157161289|ref|YP_001458607.1| cold shock-like protein CspC [Escherichia coli HS]
 gi|161503039|ref|YP_001570151.1| cold shock-like protein CspC [Salmonella enterica subsp. arizonae
          serovar 62:z4,z23:-- str. RSK2980]
 gi|161613652|ref|YP_001587617.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Paratyphi B str. SPB7]
 gi|167553480|ref|ZP_02347229.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|167993785|ref|ZP_02574878.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|168234267|ref|ZP_02659325.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|168241432|ref|ZP_02666364.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|168259923|ref|ZP_02681896.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|168462668|ref|ZP_02696599.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|168820589|ref|ZP_02832589.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|170081478|ref|YP_001730798.1| CspA family stress protein [Escherichia coli str. K-12 substr.
          DH10B]
 gi|170682897|ref|YP_001743423.1| cold shock-like protein CspC [Escherichia coli SMS-3-5]
 gi|170769370|ref|ZP_02903823.1| cold shock protein CspC [Escherichia albertii TW07627]
 gi|170770188|ref|ZP_02904641.1| cold shock protein CspC [Escherichia albertii TW07627]
 gi|187733001|ref|YP_001880620.1| cold shock-like protein CspC [Shigella boydii CDC 3083-94]
 gi|188492990|ref|ZP_03000260.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|188533664|ref|YP_001907461.1| cold shock-like protein CspC [Erwinia tasmaniensis Et1/99]
 gi|189403500|ref|ZP_02795809.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC4486]
 gi|189404552|ref|ZP_02790213.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC4501]
 gi|189405077|ref|ZP_02813248.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC869]
 gi|191171767|ref|ZP_03033314.1| cold shock protein CspC [Escherichia coli F11]
 gi|194430509|ref|ZP_03062983.1| cold shock protein CspC [Escherichia coli B171]
 gi|194434939|ref|ZP_03067183.1| cold shock protein CspC [Shigella dysenteriae 1012]
 gi|194446619|ref|YP_002041093.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194447468|ref|YP_002045883.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194471139|ref|ZP_03077123.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194735301|ref|YP_002114871.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195940304|ref|ZP_03085686.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
          EC4024]
 gi|197247963|ref|YP_002146187.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197265795|ref|ZP_03165869.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197362170|ref|YP_002141807.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|198245948|ref|YP_002215303.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|200391118|ref|ZP_03217729.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|205352499|ref|YP_002226300.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|206580814|ref|YP_002237792.1| cold shock protein CspC [Klebsiella pneumoniae 342]
 gi|207856657|ref|YP_002243308.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|208810722|ref|ZP_03252598.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4206]
 gi|208816517|ref|ZP_03257637.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4045]
 gi|208819312|ref|ZP_03259632.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4042]
 gi|209397128|ref|YP_002270903.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4115]
 gi|209919188|ref|YP_002293272.1| cold shock-like protein CspC [Escherichia coli SE11]
 gi|213028972|ref|ZP_03343419.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
 gi|213162944|ref|ZP_03348654.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
 gi|213420305|ref|ZP_03353371.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
 gi|213424204|ref|ZP_03357069.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. E02-1180]
 gi|213581262|ref|ZP_03363088.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
 gi|213620853|ref|ZP_03373636.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
 gi|213649656|ref|ZP_03379709.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
 gi|213855888|ref|ZP_03384128.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
 gi|215487035|ref|YP_002329466.1| cold shock-like protein CspC [Escherichia coli O127:H6 str.
          E2348/69]
 gi|217328839|ref|ZP_03444920.1| cold shock protein CspC [Escherichia coli O157:H7 str. TW14588]
 gi|218548618|ref|YP_002382409.1| cold shock-like protein CspC [Escherichia fergusonii ATCC 35469]
 gi|218554396|ref|YP_002387309.1| cold shock-like protein CspC [Escherichia coli IAI1]
 gi|218558685|ref|YP_002391598.1| cold shock-like protein CspC [Escherichia coli S88]
 gi|218689759|ref|YP_002397971.1| cold shock-like protein CspC [Escherichia coli ED1a]
 gi|218695386|ref|YP_002403053.1| cold shock-like protein CspC [Escherichia coli 55989]
 gi|218699608|ref|YP_002407237.1| cold shock-like protein CspC [Escherichia coli IAI39]
 gi|218705322|ref|YP_002412841.1| cold shock-like protein CspC [Escherichia coli UMN026]
 gi|224583673|ref|YP_002637471.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|227885751|ref|ZP_04003556.1| cold shock family protein CspC [Escherichia coli 83972]
 gi|237705773|ref|ZP_04536254.1| cold shock protein [Escherichia sp. 3_2_53FAA]
 gi|237731860|ref|ZP_04562341.1| cold shock-like protein cspC [Citrobacter sp. 30_2]
 gi|238895399|ref|YP_002920134.1| cold shock-like protein CspC [Klebsiella pneumoniae NTUH-K2044]
 gi|238901037|ref|YP_002926833.1| stress protein, member of the CspA-family [Escherichia coli
          BW2952]
 gi|238912099|ref|ZP_04655936.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Tennessee str. CDC07-0191]
 gi|253773223|ref|YP_003036054.1| cold shock-like protein CspC [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161882|ref|YP_003044990.1| cold shock-like protein CspC [Escherichia coli B str. REL606]
 gi|254793446|ref|YP_003078283.1| cold shock-like protein CspC [Escherichia coli O157:H7 str.
          TW14359]
 gi|256017989|ref|ZP_05431854.1| cold shock-like protein CspC [Shigella sp. D9]
 gi|256022513|ref|ZP_05436378.1| cold shock-like protein CspC [Escherichia sp. 4_1_40B]
 gi|259908254|ref|YP_002648610.1| cold shock-like protein CspC [Erwinia pyrifoliae Ep1/96]
 gi|260844168|ref|YP_003221946.1| stress protein CspC [Escherichia coli O103:H2 str. 12009]
 gi|260855683|ref|YP_003229574.1| stress protein CspC [Escherichia coli O26:H11 str. 11368]
 gi|260868343|ref|YP_003234745.1| stress protein CspC [Escherichia coli O111:H- str. 11128]
 gi|261227680|ref|ZP_05941961.1| stress protein, member of the CspA-family [Escherichia coli
          O157:H7 str. FRIK2000]
 gi|261258154|ref|ZP_05950687.1| Cold shock-like protein cspC [Escherichia coli O157:H7 str.
          FRIK966]
 gi|261340207|ref|ZP_05968065.1| conserved domain protein [Enterobacter cancerogenus ATCC 35316]
 gi|262041935|ref|ZP_06015118.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|283832781|ref|ZP_06352522.1| conserved domain protein [Citrobacter youngae ATCC 29220]
 gi|288934716|ref|YP_003438775.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|289804519|ref|ZP_06535148.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
 gi|289825969|ref|ZP_06545128.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-3139]
 gi|290508848|ref|ZP_06548219.1| cold shock protein CspG [Klebsiella sp. 1_1_55]
 gi|291283004|ref|YP_003499822.1| hypothetical protein G2583_2272 [Escherichia coli O55:H7 str.
          CB9615]
 gi|292488490|ref|YP_003531374.1| cold shock-like protein CspC [Erwinia amylovora CFBP1430]
 gi|292899677|ref|YP_003539046.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
 gi|293405319|ref|ZP_06649311.1| cold shock protein CspG [Escherichia coli FVEC1412]
 gi|293410131|ref|ZP_06653707.1| cold shock protein cspC [Escherichia coli B354]
 gi|293415138|ref|ZP_06657781.1| cold shock protein CspG [Escherichia coli B185]
 gi|293446195|ref|ZP_06662617.1| cold shock protein CspG [Escherichia coli B088]
 gi|296101843|ref|YP_003611989.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|298380961|ref|ZP_06990560.1| cold shock-like protein cspC [Escherichia coli FVEC1302]
 gi|300717038|ref|YP_003741841.1| cold shock protein [Erwinia billingiae Eb661]
 gi|300816289|ref|ZP_07096511.1| cold shock protein CspE [Escherichia coli MS 107-1]
 gi|300825532|ref|ZP_07105593.1| cold shock protein CspE [Escherichia coli MS 119-7]
 gi|300899064|ref|ZP_07117350.1| cold shock protein CspE [Escherichia coli MS 198-1]
 gi|300904686|ref|ZP_07122520.1| cold shock protein CspE [Escherichia coli MS 84-1]
 gi|300917606|ref|ZP_07134258.1| cold shock protein CspE [Escherichia coli MS 115-1]
 gi|300924891|ref|ZP_07140823.1| cold shock protein CspE [Escherichia coli MS 182-1]
 gi|300928850|ref|ZP_07144356.1| cold shock protein CspE [Escherichia coli MS 187-1]
 gi|300938827|ref|ZP_07153537.1| cold shock protein CspE [Escherichia coli MS 21-1]
 gi|300951435|ref|ZP_07165274.1| cold shock protein CspE [Escherichia coli MS 116-1]
 gi|300956672|ref|ZP_07168948.1| cold shock protein CspE [Escherichia coli MS 175-1]
 gi|300981990|ref|ZP_07175834.1| cold shock protein CspE [Escherichia coli MS 200-1]
 gi|300994227|ref|ZP_07180784.1| cold shock protein CspE [Escherichia coli MS 45-1]
 gi|301020113|ref|ZP_07184242.1| cold shock protein CspE [Escherichia coli MS 196-1]
 gi|301026567|ref|ZP_07189993.1| cold shock protein CspE [Escherichia coli MS 69-1]
 gi|301050830|ref|ZP_07197684.1| cold shock protein CspE [Escherichia coli MS 185-1]
 gi|301305922|ref|ZP_07212005.1| cold shock protein CspE [Escherichia coli MS 124-1]
 gi|301327584|ref|ZP_07220801.1| cold shock protein CspE [Escherichia coli MS 78-1]
 gi|301645665|ref|ZP_07245593.1| cold shock protein CspE [Escherichia coli MS 146-1]
 gi|306814930|ref|ZP_07449086.1| Cold shock-like protein cspC [Escherichia coli NC101]
 gi|307138483|ref|ZP_07497839.1| Cold shock-like protein cspC [Escherichia coli H736]
 gi|307314098|ref|ZP_07593710.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|309788269|ref|ZP_07682873.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
 gi|309794201|ref|ZP_07688625.1| cold shock protein CspE [Escherichia coli MS 145-7]
 gi|311279278|ref|YP_003941509.1| cold-shock DNA-binding domain-containing protein [Enterobacter
          cloacae SCF1]
 gi|312967022|ref|ZP_07781240.1| cold shock-like protein cspI [Escherichia coli 2362-75]
 gi|312969860|ref|ZP_07784043.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|317048459|ref|YP_004116107.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
          At-9b]
 gi|330002884|ref|ZP_08304436.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
 gi|331642433|ref|ZP_08343568.1| conserved domain protein [Escherichia coli H736]
 gi|331647319|ref|ZP_08348413.1| conserved domain protein [Escherichia coli M605]
 gi|331653228|ref|ZP_08354233.1| conserved domain protein [Escherichia coli M718]
 gi|331657867|ref|ZP_08358829.1| conserved domain protein [Escherichia coli TA206]
 gi|331663313|ref|ZP_08364223.1| conserved domain protein [Escherichia coli TA143]
 gi|331668514|ref|ZP_08369362.1| conserved domain protein [Escherichia coli TA271]
 gi|331673355|ref|ZP_08374123.1| conserved domain protein [Escherichia coli TA280]
 gi|331677700|ref|ZP_08378375.1| conserved domain protein [Escherichia coli H591]
 gi|331683325|ref|ZP_08383926.1| conserved domain protein [Escherichia coli H299]
 gi|332279025|ref|ZP_08391438.1| cold shock protein [Shigella sp. D9]
 gi|76364245|sp|P0A9Y6|CSPC_ECOLI RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|76364246|sp|P0A9Y9|CSPC_SALTY RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|85687551|sp|P0A9Y8|CSPC_ECO57 RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|85687552|sp|P0A9Y7|CSPC_ECOL6 RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|85687553|sp|P0A9Z0|CSPC_SALTI RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|25296121|pir||AE0727 cold shock-like protein CspC [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|12515869|gb|AAG56812.1|AE005405_3 cold shock protein [Escherichia coli O157:H7 str. EDL933]
 gi|26108488|gb|AAN80690.1|AE016761_265 Cold shock-like protein cspC [Escherichia coli CFT073]
 gi|460698|dbj|BAA05854.1| CspC (MsmB) [Escherichia coli]
 gi|479005|gb|AAA23619.1| cold-shock protein [Escherichia coli]
 gi|1736467|dbj|BAA15634.1| stress protein, member of the CspA-family [Escherichia coli str.
          K12 substr. W3110]
 gi|1788126|gb|AAC74893.1| stress protein, member of the CspA-family [Escherichia coli str.
          K-12 substr. MG1655]
 gi|13362000|dbj|BAB35956.1| cold shock protein [Escherichia coli O157:H7 str. Sakai]
 gi|16420370|gb|AAL20752.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|16503023|emb|CAD05519.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29137143|gb|AAO68707.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|30041170|gb|AAP16899.1| cold shock protein [Shigella flexneri 2a str. 2457T]
 gi|56127501|gb|AAV77007.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|62128034|gb|AAX65737.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|73855341|gb|AAZ88048.1| cold shock protein [Shigella sonnei Ss046]
 gi|81241359|gb|ABB62069.1| cold shock protein [Shigella dysenteriae Sd197]
 gi|91072616|gb|ABE07497.1| cold shock protein CspC [Escherichia coli UTI89]
 gi|110343532|gb|ABG69769.1| cold shock-like protein CspC [Escherichia coli 536]
 gi|110614931|gb|ABF03598.1| cold shock protein [Shigella flexneri 5 str. 8401]
 gi|145318915|gb|ABP61062.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
 gi|150955736|gb|ABR77766.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
 gi|157066969|gb|ABV06224.1| cold shock protein CspC [Escherichia coli HS]
 gi|157079377|gb|ABV19085.1| cold shock protein CspC [Escherichia coli E24377A]
 gi|157082615|gb|ABV12293.1| hypothetical protein CKO_01152 [Citrobacter koseri ATCC BAA-895]
 gi|160864386|gb|ABX21009.1| hypothetical protein SARI_01103 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|161363016|gb|ABX66784.1| hypothetical protein SPAB_01376 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|169889313|gb|ACB03020.1| stress protein, member of the CspA-family [Escherichia coli str.
          K-12 substr. DH10B]
 gi|170120949|gb|EDS89880.1| cold shock protein CspC [Escherichia albertii TW07627]
 gi|170121694|gb|EDS90625.1| cold shock protein CspC [Escherichia albertii TW07627]
 gi|170520615|gb|ACB18793.1| cold shock protein CspC [Escherichia coli SMS-3-5]
 gi|187429993|gb|ACD09267.1| cold shock protein CspC [Shigella boydii CDC 3083-94]
 gi|188028706|emb|CAO96568.1| Cold shock protein [Erwinia tasmaniensis Et1/99]
 gi|188488189|gb|EDU63292.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|189360403|gb|EDU78822.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4486]
 gi|189364970|gb|EDU83386.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4501]
 gi|189371934|gb|EDU90350.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC869]
 gi|190908097|gb|EDV67689.1| cold shock protein CspC [Escherichia coli F11]
 gi|194405282|gb|ACF65504.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194405772|gb|ACF65991.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|194411450|gb|EDX27798.1| cold shock protein CspC [Escherichia coli B171]
 gi|194416827|gb|EDX32952.1| cold shock protein CspC [Shigella dysenteriae 1012]
 gi|194457503|gb|EDX46342.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194710803|gb|ACF90024.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|195634080|gb|EDX52432.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|197093647|emb|CAR59117.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|197211666|gb|ACH49063.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197244050|gb|EDY26670.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197940464|gb|ACH77797.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|199603563|gb|EDZ02109.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|205272280|emb|CAR37158.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205322083|gb|EDZ09922.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205328182|gb|EDZ14946.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|205331766|gb|EDZ18530.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|205339519|gb|EDZ26283.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|205342665|gb|EDZ29429.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|205350669|gb|EDZ37300.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|206569872|gb|ACI11648.1| cold shock protein CspC [Klebsiella pneumoniae 342]
 gi|206708460|emb|CAR32781.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|208725238|gb|EDZ74945.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4206]
 gi|208730860|gb|EDZ79549.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4045]
 gi|208739435|gb|EDZ87117.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4042]
 gi|209158528|gb|ACI35961.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4115]
 gi|209767848|gb|ACI82236.1| cold shock protein [Escherichia coli]
 gi|209767850|gb|ACI82237.1| cold shock protein [Escherichia coli]
 gi|209767852|gb|ACI82238.1| cold shock protein [Escherichia coli]
 gi|209767854|gb|ACI82239.1| cold shock protein [Escherichia coli]
 gi|209767856|gb|ACI82240.1| cold shock protein [Escherichia coli]
 gi|209912447|dbj|BAG77521.1| cold shock protein [Escherichia coli SE11]
 gi|215265107|emb|CAS09495.1| stress protein, member of the CspA-family [Escherichia coli
          O127:H6 str. E2348/69]
 gi|217318186|gb|EEC26613.1| cold shock protein CspC [Escherichia coli O157:H7 str. TW14588]
 gi|218352118|emb|CAU97855.1| stress protein, member of the CspA-family [Escherichia coli
          55989]
 gi|218356159|emb|CAQ88776.1| stress protein, member of the CspA-family [Escherichia fergusonii
          ATCC 35469]
 gi|218361164|emb|CAQ98747.1| stress protein, member of the CspA-family [Escherichia coli IAI1]
 gi|218365454|emb|CAR03181.1| stress protein, member of the CspA-family [Escherichia coli S88]
 gi|218369594|emb|CAR17363.1| stress protein, member of the CspA-family [Escherichia coli
          IAI39]
 gi|218427323|emb|CAR08218.2| stress protein, member of the CspA-family [Escherichia coli ED1a]
 gi|218432419|emb|CAR13310.1| stress protein, member of the CspA-family [Escherichia coli
          UMN026]
 gi|222033570|emb|CAP76311.1| Cold shock-like protein cspC [Escherichia coli LF82]
 gi|224468200|gb|ACN46030.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|224963876|emb|CAX55379.1| Cold shock-like protein CspC [Erwinia pyrifoliae Ep1/96]
 gi|226900530|gb|EEH86789.1| cold shock protein [Escherichia sp. 3_2_53FAA]
 gi|226907399|gb|EEH93317.1| cold shock-like protein cspC [Citrobacter sp. 30_2]
 gi|227837324|gb|EEJ47790.1| cold shock family protein CspC [Escherichia coli 83972]
 gi|238547716|dbj|BAH64067.1| cold shock-like protein [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
 gi|238863580|gb|ACR65578.1| stress protein, member of the CspA-family [Escherichia coli
          BW2952]
 gi|242377543|emb|CAQ32298.1| stress protein, member of the CspA family; predicted DNA-binding
          transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253324267|gb|ACT28869.1| cold-shock DNA-binding domain protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253973783|gb|ACT39454.1| stress protein, member of the CspA-family [Escherichia coli B
          str. REL606]
 gi|253977977|gb|ACT43647.1| stress protein, member of the CspA-family [Escherichia coli
          BL21(DE3)]
 gi|254592846|gb|ACT72207.1| stress protein, member of the CspA-family [Escherichia coli
          O157:H7 str. TW14359]
 gi|257754332|dbj|BAI25834.1| stress protein CspC [Escherichia coli O26:H11 str. 11368]
 gi|257759315|dbj|BAI30812.1| stress protein CspC [Escherichia coli O103:H2 str. 12009]
 gi|257764699|dbj|BAI36194.1| stress protein CspC [Escherichia coli O111:H- str. 11128]
 gi|259040741|gb|EEW41829.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|260449056|gb|ACX39478.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|261247022|emb|CBG24839.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267993798|gb|ACY88683.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|281178889|dbj|BAI55219.1| cold shock protein [Escherichia coli SE15]
 gi|281600822|gb|ADA73806.1| Cold shock-like protein cspC [Shigella flexneri 2002017]
 gi|283478185|emb|CAY74101.1| Cold shock-like protein cspC (CSP-C) [Erwinia pyrifoliae DSM
          12163]
 gi|284921742|emb|CBG34814.1| cold shock-like protein CspC [Escherichia coli 042]
 gi|288317723|gb|EFC56661.1| conserved domain protein [Enterobacter cancerogenus ATCC 35316]
 gi|288889425|gb|ADC57743.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|289152142|gb|ADC84001.1| cold shock-like protein [Escherichia coli]
 gi|289152144|gb|ADC84002.1| cold shock-like protein [Escherichia coli]
 gi|289152146|gb|ADC84003.1| cold shock-like protein [Escherichia coli]
 gi|289152148|gb|ADC84004.1| cold shock-like protein [Escherichia coli]
 gi|289152150|gb|ADC84005.1| cold shock-like protein [Escherichia coli]
 gi|289152152|gb|ADC84006.1| cold shock-like protein [Escherichia coli]
 gi|289152154|gb|ADC84007.1| cold shock-like protein [Escherichia coli]
 gi|289152156|gb|ADC84008.1| cold shock-like protein [Escherichia coli]
 gi|289152160|gb|ADC84010.1| cold shock-like protein [Escherichia coli]
 gi|289152162|gb|ADC84011.1| cold shock-like protein [Escherichia coli]
 gi|289152164|gb|ADC84012.1| cold shock-like protein [Escherichia coli]
 gi|289152166|gb|ADC84013.1| cold shock-like protein [Escherichia coli]
 gi|289152168|gb|ADC84014.1| cold shock-like protein [Escherichia coli]
 gi|289152170|gb|ADC84015.1| cold shock-like protein [Escherichia coli]
 gi|289152172|gb|ADC84016.1| cold shock-like protein [Escherichia coli]
 gi|289152174|gb|ADC84017.1| cold shock-like protein [Escherichia coli]
 gi|289152176|gb|ADC84018.1| cold shock-like protein [Escherichia coli]
 gi|289152178|gb|ADC84019.1| cold shock-like protein [Escherichia coli]
 gi|289152180|gb|ADC84020.1| cold shock-like protein [Escherichia coli]
 gi|289152182|gb|ADC84021.1| cold shock-like protein [Escherichia coli]
 gi|289152184|gb|ADC84022.1| cold shock-like protein [Escherichia coli]
 gi|289152186|gb|ADC84023.1| cold shock-like protein [Escherichia coli]
 gi|289152188|gb|ADC84024.1| cold shock-like protein [Escherichia coli]
 gi|289152190|gb|ADC84025.1| cold shock-like protein [Escherichia coli]
 gi|289152192|gb|ADC84026.1| cold shock-like protein [Escherichia coli]
 gi|289152194|gb|ADC84027.1| cold shock-like protein [Escherichia coli]
 gi|289152196|gb|ADC84028.1| cold shock-like protein [Escherichia coli]
 gi|289152198|gb|ADC84029.1| cold shock-like protein [Escherichia coli]
 gi|289152200|gb|ADC84030.1| cold shock-like protein [Escherichia coli]
 gi|289152202|gb|ADC84031.1| cold shock-like protein [Escherichia coli]
 gi|289778242|gb|EFD86239.1| cold shock protein CspG [Klebsiella sp. 1_1_55]
 gi|290762877|gb|ADD56838.1| hypothetical protein G2583_2272 [Escherichia coli O55:H7 str.
          CB9615]
 gi|291072468|gb|EFE10577.1| conserved domain protein [Citrobacter youngae ATCC 29220]
 gi|291199525|emb|CBJ46642.1| cold shock-like protein [Erwinia amylovora ATCC 49946]
 gi|291323025|gb|EFE62453.1| cold shock protein CspG [Escherichia coli B088]
 gi|291427527|gb|EFF00554.1| cold shock protein CspG [Escherichia coli FVEC1412]
 gi|291432786|gb|EFF05765.1| cold shock protein CspG [Escherichia coli B185]
 gi|291470599|gb|EFF13083.1| cold shock protein cspC [Escherichia coli B354]
 gi|291553921|emb|CBA20966.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora CFBP1430]
 gi|294492772|gb|ADE91528.1| cold shock protein CspC [Escherichia coli IHE3034]
 gi|295056302|gb|ADF61040.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae
          ATCC 13047]
 gi|295095573|emb|CBK84663.1| Cold shock proteins [Enterobacter cloacae subsp. cloacae NCTC
          9394]
 gi|298278403|gb|EFI19917.1| cold shock-like protein cspC [Escherichia coli FVEC1302]
 gi|299062874|emb|CAX59994.1| cold shock protein [Erwinia billingiae Eb661]
 gi|299881920|gb|EFI90131.1| cold shock protein CspE [Escherichia coli MS 196-1]
 gi|300297519|gb|EFJ53904.1| cold shock protein CspE [Escherichia coli MS 185-1]
 gi|300307364|gb|EFJ61884.1| cold shock protein CspE [Escherichia coli MS 200-1]
 gi|300316550|gb|EFJ66334.1| cold shock protein CspE [Escherichia coli MS 175-1]
 gi|300357308|gb|EFJ73178.1| cold shock protein CspE [Escherichia coli MS 198-1]
 gi|300395440|gb|EFJ78978.1| cold shock protein CspE [Escherichia coli MS 69-1]
 gi|300403385|gb|EFJ86923.1| cold shock protein CspE [Escherichia coli MS 84-1]
 gi|300406355|gb|EFJ89893.1| cold shock protein CspE [Escherichia coli MS 45-1]
 gi|300415174|gb|EFJ98484.1| cold shock protein CspE [Escherichia coli MS 115-1]
 gi|300418941|gb|EFK02252.1| cold shock protein CspE [Escherichia coli MS 182-1]
 gi|300449309|gb|EFK12929.1| cold shock protein CspE [Escherichia coli MS 116-1]
 gi|300456260|gb|EFK19753.1| cold shock protein CspE [Escherichia coli MS 21-1]
 gi|300463140|gb|EFK26633.1| cold shock protein CspE [Escherichia coli MS 187-1]
 gi|300522015|gb|EFK43084.1| cold shock protein CspE [Escherichia coli MS 119-7]
 gi|300530979|gb|EFK52041.1| cold shock protein CspE [Escherichia coli MS 107-1]
 gi|300838848|gb|EFK66608.1| cold shock protein CspE [Escherichia coli MS 124-1]
 gi|300845833|gb|EFK73593.1| cold shock protein CspE [Escherichia coli MS 78-1]
 gi|301076094|gb|EFK90900.1| cold shock protein CspE [Escherichia coli MS 146-1]
 gi|301158361|emb|CBW17860.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|305851578|gb|EFM52031.1| Cold shock-like protein cspC [Escherichia coli NC101]
 gi|306906236|gb|EFN36753.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|307553841|gb|ADN46616.1| cold shock-like protein CspC [Escherichia coli ABU 83972]
 gi|307626698|gb|ADN71002.1| Cold shock-like protein cspC [Escherichia coli UM146]
 gi|308122106|gb|EFO59368.1| cold shock protein CspE [Escherichia coli MS 145-7]
 gi|308748473|gb|ADO48225.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1]
 gi|308923651|gb|EFP69154.1| cold shock-like protein cspI [Shigella dysenteriae 1617]
 gi|310338145|gb|EFQ03234.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|310767829|gb|ADP12779.1| Cold shock-like protein cspC [Erwinia sp. Ejp617]
 gi|312172634|emb|CBX80890.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora ATCC
          BAA-2158]
 gi|312288486|gb|EFR16388.1| cold shock-like protein cspI [Escherichia coli 2362-75]
 gi|312912826|dbj|BAJ36800.1| cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. T000240]
 gi|312946419|gb|ADR27246.1| cold shock-like protein CspC [Escherichia coli O83:H1 str. NRG
          857C]
 gi|313649142|gb|EFS13576.1| cold shock-like protein cspI [Shigella flexneri 2a str. 2457T]
 gi|315061126|gb|ADT75453.1| stress protein, member of the CspA-family [Escherichia coli W]
 gi|315136465|dbj|BAJ43624.1| cold shock-like protein cspC [Escherichia coli DH1]
 gi|315257366|gb|EFU37334.1| cold shock protein CspE [Escherichia coli MS 85-1]
 gi|315286527|gb|EFU45962.1| cold shock protein CspE [Escherichia coli MS 110-3]
 gi|315290383|gb|EFU49759.1| cold shock protein CspE [Escherichia coli MS 153-1]
 gi|315299954|gb|EFU59192.1| cold shock protein CspE [Escherichia coli MS 16-3]
 gi|316950076|gb|ADU69551.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
 gi|320085656|emb|CBY95434.1| Cold shock-like protein cspE CSP-E [Salmonella enterica subsp.
          enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|320173186|gb|EFW48398.1| Cold shock protein CspC [Shigella dysenteriae CDC 74-1112]
 gi|320181137|gb|EFW56056.1| Cold shock protein CspC [Shigella boydii ATCC 9905]
 gi|320185016|gb|EFW59797.1| Cold shock protein CspC [Shigella flexneri CDC 796-83]
 gi|320188522|gb|EFW63184.1| Cold shock protein CspC [Escherichia coli O157:H7 str. EC1212]
 gi|320194464|gb|EFW69095.1| Cold shock protein CspC [Escherichia coli WV_060327]
 gi|320198003|gb|EFW72611.1| Cold shock protein CspC [Escherichia coli EC4100B]
 gi|320641674|gb|EFX11062.1| cold shock-like protein cspc [Escherichia coli O157:H7 str.
          G5101]
 gi|320647033|gb|EFX15866.1| cold shock-like protein cspc [Escherichia coli O157:H- str.
          493-89]
 gi|320652316|gb|EFX20614.1| cold shock-like protein cspc [Escherichia coli O157:H- str. H
          2687]
 gi|320657918|gb|EFX25680.1| cold shock-like protein cspc [Escherichia coli O55:H7 str.
          3256-97 TW 07815]
 gi|320658491|gb|EFX26185.1| cold shock-like protein cspc [Escherichia coli O55:H7 str. USDA
          5905]
 gi|320668389|gb|EFX35216.1| cold shock-like protein cspc [Escherichia coli O157:H7 str.
          LSU-61]
 gi|321224470|gb|EFX49533.1| Cold shock protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322616832|gb|EFY13740.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315996572]
 gi|322618071|gb|EFY14963.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-1]
 gi|322625742|gb|EFY22561.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-3]
 gi|322626192|gb|EFY23002.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-4]
 gi|322633798|gb|EFY30538.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-1]
 gi|322638952|gb|EFY35645.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-2]
 gi|322640770|gb|EFY37420.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 531954]
 gi|322644157|gb|EFY40702.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. NC_MB110209-0054]
 gi|322649229|gb|EFY45667.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. OH_2009072675]
 gi|322655388|gb|EFY51696.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. CASC_09SCPH15965]
 gi|322660856|gb|EFY57087.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 19N]
 gi|322662847|gb|EFY59054.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 81038-01]
 gi|322668031|gb|EFY64190.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. MD_MDA09249507]
 gi|322674207|gb|EFY70301.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 414877]
 gi|322675438|gb|EFY71512.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 366867]
 gi|322683147|gb|EFY79163.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 413180]
 gi|322686841|gb|EFY82819.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 446600]
 gi|322714876|gb|EFZ06447.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
 gi|323130112|gb|ADX17542.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
 gi|323152935|gb|EFZ39204.1| cold shock-like protein cspI [Escherichia coli EPECa14]
 gi|323175099|gb|EFZ60713.1| cold shock-like protein cspI [Escherichia coli LT-68]
 gi|323180603|gb|EFZ66148.1| cold shock-like protein cspI [Escherichia coli 1180]
 gi|323186429|gb|EFZ71777.1| cold shock-like protein cspI [Escherichia coli 1357]
 gi|323186827|gb|EFZ72146.1| cold shock-like protein cspI [Escherichia coli RN587/1]
 gi|323195267|gb|EFZ80447.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609458-1]
 gi|323199160|gb|EFZ84255.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556150-1]
 gi|323203311|gb|EFZ88338.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609460]
 gi|323207416|gb|EFZ92364.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 507440-20]
 gi|323213768|gb|EFZ98550.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556152]
 gi|323217399|gb|EGA02118.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB101509-0077]
 gi|323223230|gb|EGA07571.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB102109-0047]
 gi|323224674|gb|EGA08947.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
 gi|323231422|gb|EGA15535.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB111609-0052]
 gi|323235862|gb|EGA19941.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009083312]
 gi|323240431|gb|EGA24474.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009085258]
 gi|323245324|gb|EGA29324.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315731156]
 gi|323246691|gb|EGA30663.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2009159199]
 gi|323253546|gb|EGA37374.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008282]
 gi|323258076|gb|EGA41754.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008283]
 gi|323259373|gb|EGA43012.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008284]
 gi|323266797|gb|EGA50283.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008285]
 gi|323269003|gb|EGA52459.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008287]
 gi|323378298|gb|ADX50566.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323937081|gb|EGB33361.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1520]
 gi|323940511|gb|EGB36702.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323948292|gb|EGB44280.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323952324|gb|EGB48197.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H252]
 gi|323956452|gb|EGB52194.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H263]
 gi|323961877|gb|EGB57476.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H489]
 gi|323968590|gb|EGB63996.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli M863]
 gi|323972670|gb|EGB67873.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|323977994|gb|EGB73080.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TW10509]
 gi|324007189|gb|EGB76408.1| cold shock protein CspE [Escherichia coli MS 57-2]
 gi|324011600|gb|EGB80819.1| cold shock protein CspE [Escherichia coli MS 60-1]
 gi|324018044|gb|EGB87263.1| cold shock protein CspE [Escherichia coli MS 117-3]
 gi|324113559|gb|EGC07534.1| cold-shock DNA-binding domain-containing protein [Escherichia
          fergusonii B253]
 gi|324118883|gb|EGC12772.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1167]
 gi|325497031|gb|EGC94890.1| cold shock-like protein CspC [Escherichia fergusonii ECD227]
 gi|326342201|gb|EGD65982.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1044]
 gi|326343751|gb|EGD67513.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1125]
 gi|326627557|gb|EGE33900.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
 gi|327252944|gb|EGE64598.1| cold shock-like protein cspI [Escherichia coli STEC_7v]
 gi|328537175|gb|EGF63445.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3]
 gi|330911630|gb|EGH40140.1| cold shock protein CspC [Escherichia coli AA86]
 gi|331039231|gb|EGI11451.1| conserved domain protein [Escherichia coli H736]
 gi|331044102|gb|EGI16238.1| conserved domain protein [Escherichia coli M605]
 gi|331049326|gb|EGI21398.1| conserved domain protein [Escherichia coli M718]
 gi|331056115|gb|EGI28124.1| conserved domain protein [Escherichia coli TA206]
 gi|331059112|gb|EGI31089.1| conserved domain protein [Escherichia coli TA143]
 gi|331063708|gb|EGI35619.1| conserved domain protein [Escherichia coli TA271]
 gi|331069553|gb|EGI40940.1| conserved domain protein [Escherichia coli TA280]
 gi|331074160|gb|EGI45480.1| conserved domain protein [Escherichia coli H591]
 gi|331079540|gb|EGI50737.1| conserved domain protein [Escherichia coli H299]
 gi|332089944|gb|EGI95044.1| cold shock-like protein cspI [Shigella boydii 5216-82]
 gi|332093283|gb|EGI98342.1| cold shock-like protein cspI [Shigella dysenteriae 155-74]
 gi|332096604|gb|EGJ01598.1| cold shock-like protein cspI [Shigella boydii 3594-74]
 gi|332101377|gb|EGJ04723.1| cold shock protein [Shigella sp. D9]
 gi|332343548|gb|AEE56882.1| cold shock-like protein CspI [Escherichia coli UMNK88]
 gi|332760591|gb|EGJ90880.1| cold shock-like protein cspI [Shigella flexneri 2747-71]
 gi|332762433|gb|EGJ92698.1| cold shock-like protein cspI [Shigella flexneri 4343-70]
 gi|332762911|gb|EGJ93165.1| cold shock-like protein cspI [Shigella flexneri K-671]
 gi|332767108|gb|EGJ97303.1| cold shock protein [Shigella flexneri 2930-71]
 gi|332988724|gb|AEF07707.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
 gi|333003646|gb|EGK23182.1| cold shock-like protein cspI [Shigella flexneri VA-6]
 gi|333004280|gb|EGK23811.1| cold shock-like protein cspI [Shigella flexneri K-218]
 gi|333006745|gb|EGK26242.1| cold shock-like protein cspI [Shigella flexneri K-272]
 gi|333018379|gb|EGK37678.1| cold shock-like protein cspI [Shigella flexneri K-304]
 gi|333018661|gb|EGK37954.1| cold shock-like protein cspI [Shigella flexneri K-227]
          Length = 69

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 61 P-AAVNVTAI 69


>gi|242239458|ref|YP_002987639.1| cold shock-like protein CspC [Dickeya dadantii Ech703]
 gi|242131515|gb|ACS85817.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
          Length = 69

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGTGFKTLAEGQNVEFEI-QDGQKG 60

Query: 64 KYSAENLKLV 73
            SA N+  +
Sbjct: 61 P-SAVNVTAL 69


>gi|218297043|ref|ZP_03497720.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23]
 gi|218242598|gb|EED09135.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23]
          Length = 68

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI  E     G DVF+H +A+ + G   L EG+ V ++      
Sbjct: 1  MKKGTVKWFNAEKGYGFIQQE----EGPDVFVHFTAIEADGFRTLNEGEHVEFEVEPGRG 56

Query: 62 NGKYSAENLKLV 73
               A+ ++ +
Sbjct: 57 GKGPQAKKVRRI 68


>gi|297171013|gb|ADI22027.1| cold shock proteins [uncultured myxobacterium HF0200_05J13]
          Length = 69

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P G    G+DVF+H S +   G   L EGQ V Y+ + +D 
Sbjct: 1  MLTGTVKWFNNKKGFGFILPAG---GGEDVFVHFSVIEGDGFKTLAEGQGVEYELMDSD- 56

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 57 KGMRAAVV 64


>gi|294637324|ref|ZP_06715621.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
 gi|291089507|gb|EFE22068.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
          Length = 71

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +  V+N   G
Sbjct: 6  TGSVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNEFRTLDEGQKVEFS-VENGPKG 61

Query: 64 KYSAENLKL 72
            +   + +
Sbjct: 62 PSAVNVVAI 70


>gi|255531845|ref|YP_003092217.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366]
 gi|255344829|gb|ACU04155.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366]
          Length = 68

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N  KG+GFITPE   + G D+F+H SA+A      L EG  V ++   ND
Sbjct: 1  MRTTGKVKWFNSAKGFGFITPE---DGGKDIFVHFSAIAGDSFRELNEGDSVEFEL--ND 55

Query: 61 ANGKYSAENLKLV 73
                A+N+ ++
Sbjct: 56 GKKGPEAQNVTVL 68


>gi|224826638|ref|ZP_03699739.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
 gi|224601239|gb|EEG07421.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+     G+D+F H S + + G  +L EGQ V+Y   +   
Sbjct: 1  METGTVKWFNDAKGFGFISPDA---GGEDLFAHFSEIRADGFKSLQEGQKVSYQSGKGQK 57

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 58 G--PQATNIQPL 67


>gi|187925980|ref|YP_001892325.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
 gi|241665465|ref|YP_002983824.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
 gi|187727734|gb|ACD28898.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
 gi|240867492|gb|ACS65152.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+G    G D+F H S +  +G   L +GQ V+++  Q   
Sbjct: 1  MATGTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|187477994|ref|YP_786018.1| cold shock-like protein [Bordetella avium 197N]
 gi|115422580|emb|CAJ49105.1| cold shock-like protein [Bordetella avium 197N]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFITPE     G D+F H S + S G   L E Q V+Y       
Sbjct: 1  METGVVKWFNAEKGYGFITPES---GGKDLFAHFSEIQSNGFKTLEENQRVSY-VTAMGP 56

Query: 62 NGKYSAENLKLV 73
           G   A  ++L+
Sbjct: 57 KGPQ-ATKIQLI 67


>gi|22538234|ref|NP_689085.1| CSD family cold shock protein [Streptococcus agalactiae 2603V/R]
 gi|25012091|ref|NP_736486.1| hypothetical protein gbs2053 [Streptococcus agalactiae NEM316]
 gi|76788151|ref|YP_330629.1| cold shock protein [Streptococcus agalactiae A909]
 gi|77405153|ref|ZP_00782252.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae H36B]
 gi|77408137|ref|ZP_00784883.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae COH1]
 gi|77410841|ref|ZP_00787198.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae CJB111]
 gi|77414028|ref|ZP_00790199.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae 515]
 gi|22535146|gb|AAN00958.1|AE014286_21 cold shock protein, CSD family [Streptococcus agalactiae 2603V/R]
 gi|24413635|emb|CAD47712.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563208|gb|ABA45792.1| cold shock protein [Streptococcus agalactiae A909]
 gi|77159910|gb|EAO71050.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae 515]
 gi|77163059|gb|EAO74013.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae CJB111]
 gi|77173237|gb|EAO76360.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae COH1]
 gi|77176296|gb|EAO79066.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae H36B]
 gi|319745994|gb|EFV98276.1| cold shock protein CspA [Streptococcus agalactiae ATCC 13813]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI    S+E+G DVF H S +   G   L EGQ VT+D  Q+  
Sbjct: 1  MTQGTVKWFNSEKGFGFI----SSETGTDVFAHFSEIKVDGFKTLEEGQKVTFDI-QDGQ 55

Query: 62 NGKYSAENLKLVP 74
           G   A N+ LV 
Sbjct: 56 RGPQ-ATNINLVK 67


>gi|291459899|ref|ZP_06599289.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
          F0262]
 gi|291417240|gb|EFE90959.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
          F0262]
          Length = 65

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW+N  KGYGFI    S E+G DVF+H S +A  G  +L EGQ V +D V + A G
Sbjct: 2  RGTVKWFNNQKGYGFI----SDETGKDVFVHYSGLAGEGFKSLEEGQAVEFDVV-DGAKG 56

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 57 PQATNVVKL 65


>gi|119944855|ref|YP_942535.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119863459|gb|ABM02936.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFITPE   E G+D+F+H S + + G   L EGQ V Y+  +   
Sbjct: 1  MSIGTVKWFNADKGFGFITPE---EGGNDLFVHHSQIKTGGYATLNEGQKVEYEVGEGQK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--PCANNVVPL 67


>gi|242074456|ref|XP_002447164.1| hypothetical protein SORBIDRAFT_06g029650 [Sorghum bicolor]
 gi|241938347|gb|EES11492.1| hypothetical protein SORBIDRAFT_06g029650 [Sorghum bicolor]
          Length = 215

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFITP+ ++E   D+F+H+S++   G  +L EG+ V Y    +  +G
Sbjct: 7  TGTVKWFNVDKGFGFITPDDASE---DLFVHQSSIKCDGYRSLKEGEAVEYTVG-SGQDG 62

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 63 RTKAMDVT 70


>gi|188591773|ref|YP_001796372.1| major cold shock protein [Cupriavidus taiwanensis]
 gi|170939168|emb|CAP64206.1| major cold shock protein [Cupriavidus taiwanensis LMG 19424]
          Length = 67

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFITP+   + G D+F H   +  AG  +L EG  V ++  Q   
Sbjct: 1  MATGIVKWFNSEKGYGFITPD---DGGKDLFAHYKEIQGAGFKSLEEGAKVEFEITQGMK 57

Query: 62 NGKYS 66
            + S
Sbjct: 58 GPQAS 62


>gi|54309149|ref|YP_130169.1| putative cold shock-like protein [Photobacterium profundum SS9]
 gi|90410345|ref|ZP_01218361.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
 gi|46913581|emb|CAG20367.1| putative Cold shock-like protein [Photobacterium profundum SS9]
 gi|90328586|gb|EAS44870.1| putative Cold shock-like protein [Photobacterium profundum 3TCK]
          Length = 69

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+   G  +L EGQ V++D  Q    G
Sbjct: 5  TGIVKWFNDEKGFGFITQD---NGGADVFVHFRAITGDGFKSLAEGQKVSFDVEQGQ-KG 60

Query: 64 KYSAEN 69
            +A  
Sbjct: 61 PQAANV 66


>gi|152988646|ref|YP_001347949.1| cold shock domain-containing protein CspD [Pseudomonas aeruginosa
          PA7]
 gi|150963804|gb|ABR85829.1| cold shock domain protein CspD [Pseudomonas aeruginosa PA7]
          Length = 90

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  EG  E   D+F H SA+   G   L  GQ V ++ +Q   
Sbjct: 1  MLSGKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPK 57

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 58 G--LHAINI 64


>gi|157371292|ref|YP_001479281.1| cold-shock DNA-binding domain-containing protein [Serratia
          proteamaculans 568]
 gi|270262466|ref|ZP_06190737.1| hypothetical protein SOD_c00830 [Serratia odorifera 4Rx13]
 gi|293395496|ref|ZP_06639780.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
 gi|320539351|ref|ZP_08039020.1| putative cold-shock DNA-binding domain-containing protein
          [Serratia symbiotica str. Tucson]
 gi|157323056|gb|ABV42153.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
 gi|270043150|gb|EFA16243.1| hypothetical protein SOD_c00830 [Serratia odorifera 4Rx13]
 gi|291422180|gb|EFE95425.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
 gi|320030476|gb|EFW12486.1| putative cold-shock DNA-binding domain-containing protein
          [Serratia symbiotica str. Tucson]
          Length = 70

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +   +N A
Sbjct: 4  MIKGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQNVQFSI-ENGA 59

Query: 62 NGKYSAENLKL 72
           G  +A    +
Sbjct: 60 KGPSAANVTAI 70


>gi|71892224|ref|YP_277957.1| cold shock-like protein CspC [Candidatus Blochmannia
          pennsylvanicus str. BPEN]
 gi|71796330|gb|AAZ41081.1| cold shock-like protein [Candidatus Blochmannia pennsylvanicus
          str. BPEN]
          Length = 69

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP   ++   DVF+H SA+   G   L+EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---SDGSKDVFVHFSAIQGNGFKTLSEGQSVEFEI-QDGHKG 60

Query: 64 KYSAENLKLV 73
            SA N+  +
Sbjct: 61 P-SAVNVTAL 69


>gi|78222480|ref|YP_384227.1| cold-shock DNA-binding protein family protein [Geobacter
          metallireducens GS-15]
 gi|78193735|gb|ABB31502.1| cold-shock DNA-binding protein family [Geobacter metallireducens
          GS-15]
          Length = 66

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI  E    +G+DVF+H SA+ S G   L EG+ VT+D V    
Sbjct: 1  MAQGKVKWFNDAKGFGFIEQE----NGEDVFVHFSAIQSDGFKTLAEGEAVTFDVVTGPK 56

Query: 62 NGKYSAENLK 71
               A N+K
Sbjct: 57 G--LQAANVK 64


>gi|330720265|gb|EGG98627.1| Cold shock protein [gamma proteobacterium IMCC2047]
          Length = 145

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             +G++KW+N  KG+GFIT +    SG+DVF+H  +V   G   L EGQ V +  V+ + 
Sbjct: 79  REQGTVKWFNVTKGFGFITRD----SGEDVFVHYRSVRGNGRRTLREGQRVLFKVVEGEK 134

Query: 62  NGKYSAENLKL 72
                AE++ +
Sbjct: 135 G--LQAEDVSV 143


>gi|302391175|ref|YP_003826995.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
 gi|302203252|gb|ADL11930.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
          Length = 67

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G++KW++  KGYGFI     +E G+DVF+H SA+   G   L +GQ V ++ V+ D
Sbjct: 1  MILSGTVKWFDTKKGYGFIE----SEEGEDVFVHYSAIDEDGFKTLEDGQEVEFEIVEGD 56

Query: 61 ANGKYSAENLKL 72
            G  +   +K+
Sbjct: 57 -KGPQAENVVKI 67


>gi|150398072|ref|YP_001328539.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|150029587|gb|ABR61704.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
          Length = 68

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKG+GFITPE     G DVF+H SA+   G  +L+EGQ V+Y+  Q+  
Sbjct: 1  MATGTVKFFNGDKGFGFITPE---NGGTDVFVHVSALQEGG--SLSEGQRVSYEIGQDRK 55

Query: 62 NGKYSAENLKLV 73
           GK  AEN++++
Sbjct: 56 TGKSRAENVRVL 67


>gi|91775760|ref|YP_545516.1| cold-shock DNA-binding protein family protein [Methylobacillus
          flagellatus KT]
 gi|91709747|gb|ABE49675.1| cold-shock DNA-binding protein family [Methylobacillus
          flagellatus KT]
          Length = 67

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+P+   E GDD+F H S + ++G  +L E   V ++  Q  A
Sbjct: 1  MALGTVKWFNDAKGFGFISPD---EGGDDLFAHFSEIQTSGYKSLKENDRVQFEITQT-A 56

Query: 62 NGKYSAENLK 71
           GK  A N++
Sbjct: 57 KGKQ-ASNIQ 65


>gi|30020489|ref|NP_832120.1| cold shock protein [Bacillus cereus ATCC 14579]
 gi|206971664|ref|ZP_03232614.1| cold shock protein CspA [Bacillus cereus AH1134]
 gi|218231164|ref|YP_002367103.1| cold shock protein CspA [Bacillus cereus B4264]
 gi|218897365|ref|YP_002445776.1| cold shock protein CspA [Bacillus cereus G9842]
 gi|228901011|ref|ZP_04065222.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|228921113|ref|ZP_04084445.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228939557|ref|ZP_04102143.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228952772|ref|ZP_04114844.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228958674|ref|ZP_04120390.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228965387|ref|ZP_04126478.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228972409|ref|ZP_04133019.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228979023|ref|ZP_04139386.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|229044152|ref|ZP_04191834.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|229069923|ref|ZP_04203203.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|229079591|ref|ZP_04212127.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
 gi|229109840|ref|ZP_04239424.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
 gi|229127796|ref|ZP_04256782.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
 gi|229144998|ref|ZP_04273393.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|229150609|ref|ZP_04278823.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|229178759|ref|ZP_04306122.1| Cold shock protein cspB [Bacillus cereus 172560W]
 gi|229190497|ref|ZP_04317494.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|296502953|ref|YP_003664653.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|49035523|sp|Q81DK5|CSPE_BACCR RecName: Full=Cold shock-like protein CspE
 gi|29896040|gb|AAP09321.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gi|206733649|gb|EDZ50821.1| cold shock protein CspA [Bacillus cereus AH1134]
 gi|218159121|gb|ACK59113.1| cold shock protein CspA [Bacillus cereus B4264]
 gi|218544454|gb|ACK96848.1| cold shock protein CspA [Bacillus cereus G9842]
 gi|228592842|gb|EEK50664.1| Cold shock protein cspB [Bacillus cereus ATCC 10876]
 gi|228604698|gb|EEK62156.1| Cold shock protein cspB [Bacillus cereus 172560W]
 gi|228632696|gb|EEK89311.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|228638447|gb|EEK94882.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|228655561|gb|EEL11413.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4]
 gi|228673592|gb|EEL28852.1| Cold shock protein cspB [Bacillus cereus Rock1-15]
 gi|228703705|gb|EEL56155.1| Cold shock protein cspB [Bacillus cereus Rock4-2]
 gi|228713191|gb|EEL65086.1| Cold shock protein cspB [Bacillus cereus F65185]
 gi|228725177|gb|EEL76452.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|228780687|gb|EEM28902.1| Cold shock protein cspB [Bacillus thuringiensis Bt407]
 gi|228787284|gb|EEM35253.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228794301|gb|EEM41816.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228800990|gb|EEM47891.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228806891|gb|EEM53438.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|228820100|gb|EEM66139.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228838529|gb|EEM83838.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228858608|gb|EEN03057.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222]
 gi|296324005|gb|ADH06933.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|326940103|gb|AEA15999.1| cold shock protein [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 67

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI        G+DVF+H SA+   G  +L EGQ V+++  + +
Sbjct: 1  MTLTGKVKWFNSEKGFGFIE----VADGNDVFVHFSAITGDGFKSLDEGQEVSFEVEEGN 56

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 57 -RGPQAKNVVKL 67


>gi|302552922|ref|ZP_07305264.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
 gi|302470540|gb|EFL33633.1| cold shock domain-containing protein CspD [Streptomyces
          viridochromogenes DSM 40736]
          Length = 67

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF H S +A+ G   L EGQ V++D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIEQEG---GGPDVFAHYSNIAAQGFRELLEGQKVSFDVAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|222099783|ref|YP_002534351.1| Cold-shock DNA-binding protein family [Thermotoga neapolitana DSM
          4359]
 gi|221572173|gb|ACM22985.1| Cold-shock DNA-binding protein family [Thermotoga neapolitana DSM
          4359]
          Length = 78

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW++  KGYGFIT     E+G+D+F+H SA+   G   L E + V +D  Q     
Sbjct: 14 RGTVKWFDSKKGYGFIT----MENGEDIFVHWSAIQMDGFKTLRENEPVEFDVQQGTKG- 68

Query: 64 KYSAENLKLV 73
             A N++ V
Sbjct: 69 -PQAVNVRPV 77


>gi|329769588|ref|ZP_08260993.1| cold shock protein cspA [Gemella sanguinis M325]
 gi|328838540|gb|EGF88147.1| cold shock protein cspA [Gemella sanguinis M325]
          Length = 66

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  EG      DVF+H S++   G   L EG  V +  V+  A
Sbjct: 1  MKQGTVKWFNEEKGFGFIAVEGE----KDVFVHFSSIQKEGFKTLKEGDKVEFS-VEEGA 55

Query: 62 NGKYSAENLKL 72
           G  +A  + L
Sbjct: 56 RGPQAANVVVL 66


>gi|118497319|ref|YP_898369.1| cold shock protein [Francisella tularensis subsp. novicida U112]
 gi|167627835|ref|YP_001678335.1| cold-shock DNA-binding domain-containing protein [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
 gi|195536005|ref|ZP_03079012.1| cold-shock' DNA-binding domain, putative [Francisella tularensis
          subsp. novicida FTE]
 gi|208779106|ref|ZP_03246452.1| cold-shock' DNA-binding domain protein, putative [Francisella
          novicida FTG]
 gi|241668393|ref|ZP_04755971.1| cold-shock DNA-binding domain-containing protein [Francisella
          philomiragia subsp. philomiragia ATCC 25015]
 gi|254372686|ref|ZP_04988175.1| hypothetical protein FTCG_00251 [Francisella tularensis subsp.
          novicida GA99-3549]
 gi|254374143|ref|ZP_04989625.1| hypothetical protein FTDG_00305 [Francisella novicida GA99-3548]
 gi|254876926|ref|ZP_05249636.1| cold shock protein [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
 gi|118423225|gb|ABK89615.1| cold shock protein, DNA-binding [Francisella novicida U112]
 gi|151570413|gb|EDN36067.1| hypothetical protein FTCG_00251 [Francisella novicida GA99-3549]
 gi|151571863|gb|EDN37517.1| hypothetical protein FTDG_00305 [Francisella novicida GA99-3548]
 gi|167597836|gb|ABZ87834.1| putative cold-shock DNA-binding domain protein [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
 gi|194372482|gb|EDX27193.1| cold-shock' DNA-binding domain, putative [Francisella tularensis
          subsp. novicida FTE]
 gi|208744906|gb|EDZ91204.1| cold-shock' DNA-binding domain protein, putative [Francisella
          novicida FTG]
 gi|254842947|gb|EET21361.1| cold shock protein [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
 gi|328676804|gb|AEB27674.1| Cold shock protein CspC [Francisella cf. novicida Fx1]
          Length = 67

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFI P    + G DVF+H SAV +AGL +L EG+ ++++  +N  
Sbjct: 1  MRQGTVKFFNTSKGFGFIEP---QDGGKDVFVHISAVENAGLSSLREGEKISFEVEEN-- 55

Query: 62 NGKYSAENLK 71
           GK +A N+K
Sbjct: 56 RGKMAAVNIK 65


>gi|289549228|ref|YP_003474216.1| cold-shock DNA-binding domain protein [Thermocrinis albus DSM
          14484]
 gi|289182845|gb|ADC90089.1| cold-shock DNA-binding domain protein [Thermocrinis albus DSM
          14484]
          Length = 69

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          MV RG++KW++ +KGYGFIT +   ++  DVF+H SA+   G   L +GQ V ++  ++ 
Sbjct: 1  MVVRGTVKWFSKEKGYGFITRD---DNQGDVFVHFSAIQQRGFKTLEQGQKVEFEIEEDS 57

Query: 61 ANGKYSAENLKLV 73
             +  A+N++++
Sbjct: 58 KGPR--AKNVRVI 68


>gi|73542439|ref|YP_296959.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72119852|gb|AAZ62115.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 69

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+   E  +++F H SA+  AG   L EGQ V+++ VQ   
Sbjct: 1  MASGIVKWFNDAKGFGFIKPD---EGEEELFAHFSAIQMAGFKTLKEGQRVSFEVVQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQATNIQ 65


>gi|85058123|ref|YP_453825.1| major cold shock protein [Sodalis glossinidius str. 'morsitans']
 gi|84778643|dbj|BAE73420.1| major cold shock protein [Sodalis glossinidius str. 'morsitans']
          Length = 70

 Score = 97.3 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +   Q    G
Sbjct: 6  TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQRVEFTIEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PSAANVVAL 70


>gi|222082370|ref|YP_002541735.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221727049|gb|ACM30138.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 67

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKG+GFITPE     G DVF+H SA+   G  +L EG+ V+Y+  Q+  
Sbjct: 1  MPTGTVKFFNEDKGFGFITPE---NGGTDVFVHVSALQRGG--SLREGEKVSYELGQDRK 55

Query: 62 NGKYSAENLKLV 73
           GK  AEN+ ++
Sbjct: 56 TGKSKAENVSVL 67


>gi|104781104|ref|YP_607602.1| cold shock protein CapA [Pseudomonas entomophila L48]
 gi|95110091|emb|CAK14796.1| cold shock protein CapA [Pseudomonas entomophila L48]
          Length = 70

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KGYGFITP G    GDD+F+H  A+ S G  +L EGQ VT+   +   
Sbjct: 4  RQNGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQAVTF-VAEKGQ 59

Query: 62 NGKYSAEN 69
           G  +A+ 
Sbjct: 60 KGMQAAQV 67


>gi|15827003|ref|NP_301266.1| cold shock protein [Mycobacterium leprae TN]
 gi|118619394|ref|YP_907726.1| cold shock protein A CspA_1 [Mycobacterium ulcerans Agy99]
 gi|183985108|ref|YP_001853399.1| cold shock protein A CspA_1 [Mycobacterium marinum M]
 gi|221229481|ref|YP_002502897.1| putative cold shock protein [Mycobacterium leprae Br4923]
 gi|296166704|ref|ZP_06849129.1| cold shock protein CspA [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|3097243|emb|CAA18820.1| small cold-shock protein [Mycobacterium leprae]
 gi|13092550|emb|CAC29706.1| putative cold shock protein [Mycobacterium leprae]
 gi|118571504|gb|ABL06255.1| cold shock protein A CspA_1 [Mycobacterium ulcerans Agy99]
 gi|183178434|gb|ACC43544.1| cold shock protein A CspA_1 [Mycobacterium marinum M]
 gi|219932588|emb|CAR70291.1| putative cold shock protein [Mycobacterium leprae Br4923]
 gi|295897969|gb|EFG77550.1| cold shock protein CspA [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 67

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H + +  +G   L E Q V ++   +  
Sbjct: 1  MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEIGHSPK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|254505942|ref|ZP_05118087.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus
          16]
 gi|323498518|ref|ZP_08103511.1| cold shock protein CspE [Vibrio sinaloensis DSM 21326]
 gi|219551165|gb|EED28145.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus
          16]
 gi|323316407|gb|EGA69425.1| cold shock protein CspE [Vibrio sinaloensis DSM 21326]
          Length = 69

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNETKGFGFI----KQENGPDVFAHFSAITGDGFRTLAEGQKVEFVITQGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+K V
Sbjct: 61 -PQAENIKAV 69


>gi|186473789|ref|YP_001861131.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184196121|gb|ACC74085.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 67

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   + GDD+F H S +   G   L E Q V+++  +   
Sbjct: 1  METGIVKWFNDSKGFGFITPD---KGGDDLFAHFSEITGEGFKTLAENQKVSFEIKKGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 58 G--LQAANIKPL 67


>gi|24112787|ref|NP_707297.1| cold shock-like protein CspC [Shigella flexneri 2a str. 301]
 gi|82543745|ref|YP_407692.1| cold shock-like protein CspC [Shigella boydii Sb227]
 gi|33301070|sp|Q83RI9|CSPC_SHIFL RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|24051715|gb|AAN43004.1| cold shock protein [Shigella flexneri 2a str. 301]
 gi|81245156|gb|ABB65864.1| cold shock protein [Shigella boydii Sb227]
          Length = 69

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   GL  L EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGLKTLAEGQNVEFEI-QDGQKG 60

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 61 P-AAVNVTAI 69


>gi|228911418|ref|ZP_04075217.1| hypothetical protein bthur0013_55540 [Bacillus thuringiensis IBL
          200]
 gi|228848225|gb|EEM93080.1| hypothetical protein bthur0013_55540 [Bacillus thuringiensis IBL
          200]
          Length = 66

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N DKG+GFI  E     G+DVF+H SA+   G  +L EGQ VT++  +   
Sbjct: 1  MEQGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQIDGFKSLDEGQSVTFEVEKGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--LQATNVQ 64


>gi|45441309|ref|NP_992848.1| cold shock-like protein CspC [Yersinia pestis biovar Microtus
          str. 91001]
 gi|51595960|ref|YP_070151.1| cold shock-like protein CspC [Yersinia pseudotuberculosis IP
          32953]
 gi|108807116|ref|YP_651032.1| cold shock-like protein CspC [Yersinia pestis Antiqua]
 gi|108812537|ref|YP_648304.1| cold shock-like protein CspC [Yersinia pestis Nepal516]
 gi|123442059|ref|YP_001006042.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|145598663|ref|YP_001162739.1| cold shock-like protein CspC [Yersinia pestis Pestoides F]
 gi|149366301|ref|ZP_01888336.1| cold shock protein [Yersinia pestis CA88-4125]
 gi|157371062|ref|YP_001479051.1| cold shock-like protein CspC [Serratia proteamaculans 568]
 gi|165927969|ref|ZP_02223801.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|166010855|ref|ZP_02231753.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166211069|ref|ZP_02237104.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167420033|ref|ZP_02311786.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167427111|ref|ZP_02318864.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|170024699|ref|YP_001721204.1| cold shock-like protein CspC [Yersinia pseudotuberculosis YPIII]
 gi|186895059|ref|YP_001872171.1| cold shock-like protein CspC [Yersinia pseudotuberculosis PB1/+]
 gi|218928871|ref|YP_002346746.1| cold shock-like protein CspC [Yersinia pestis CO92]
 gi|229894196|ref|ZP_04509379.1| stress protein, member of the CspA-family [Yersinia pestis
          Pestoides A]
 gi|229897121|ref|ZP_04512277.1| stress protein, member of the CspA-family [Yersinia pestis biovar
          Orientalis str. PEXU2]
 gi|229897848|ref|ZP_04512999.1| stress protein, member of the CspA-family [Yersinia pestis biovar
          Orientalis str. India 195]
 gi|229902921|ref|ZP_04518038.1| stress protein, member of the CspA-family [Yersinia pestis
          Nepal516]
 gi|257168081|ref|YP_003169746.1| cold shock-like protein CspC [Yersinia pestis KIM 10]
 gi|270262270|ref|ZP_06190542.1| Cold shock-like protein CspC [Serratia odorifera 4Rx13]
 gi|270486706|ref|ZP_06203780.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|284988616|ref|YP_003422337.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
 gi|293395700|ref|ZP_06639982.1| MerR family copper efflux regulator [Serratia odorifera DSM 4582]
 gi|322833600|ref|YP_004213627.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|332162025|ref|YP_004298602.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|45436169|gb|AAS61725.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
 gi|51589242|emb|CAH20863.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
 gi|108776185|gb|ABG18704.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108779029|gb|ABG13087.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
 gi|115347482|emb|CAL20388.1| cold shock protein [Yersinia pestis CO92]
 gi|122089020|emb|CAL11834.1| cold shock-like protein cspC1 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|145210359|gb|ABP39766.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|149292714|gb|EDM42788.1| cold shock protein [Yersinia pestis CA88-4125]
 gi|157322826|gb|ABV41923.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
 gi|165920026|gb|EDR37327.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165990199|gb|EDR42500.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166208249|gb|EDR52729.1| conserved domain protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166961728|gb|EDR57749.1| conserved domain protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167053904|gb|EDR63736.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|169751233|gb|ACA68751.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186698085|gb|ACC88714.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229680368|gb|EEO76467.1| stress protein, member of the CspA-family [Yersinia pestis
          Nepal516]
 gi|229688889|gb|EEO80954.1| stress protein, member of the CspA-family [Yersinia pestis biovar
          Orientalis str. India 195]
 gi|229693458|gb|EEO83507.1| stress protein, member of the CspA-family [Yersinia pestis biovar
          Orientalis str. PEXU2]
 gi|229703594|gb|EEO90610.1| stress protein, member of the CspA-family [Yersinia pestis
          Pestoides A]
 gi|270044146|gb|EFA17238.1| Cold shock-like protein CspC [Serratia odorifera 4Rx13]
 gi|270335210|gb|EFA45987.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|291421637|gb|EFE94884.1| MerR family copper efflux regulator [Serratia odorifera DSM 4582]
 gi|320015521|gb|ADV99092.1| stress protein, member of the CspA-family [Yersinia pestis biovar
          Medievalis str. Harbin 35]
 gi|321168801|gb|ADW74500.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|325666255|gb|ADZ42899.1| cold shock-like protein CspC [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330860843|emb|CBX71127.1| cold shock-like protein cspC [Yersinia enterocolitica W22703]
          Length = 69

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60

Query: 64 KYSAENLKLV 73
            SA N+  +
Sbjct: 61 P-SAVNVTAI 69


>gi|284046161|ref|YP_003396501.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
 gi|283950382|gb|ADB53126.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
          Length = 67

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++ +KG+GFITP+   E   D+F+H + + S G  +L EG  V+YD  Q D 
Sbjct: 1  MPTGTVKWFSDEKGFGFITPD---EGSRDLFVHHTGINSDGYRSLAEGAKVSYDEEQGDK 57

Query: 62 NGKYSAENLKLV 73
            K  A N+  +
Sbjct: 58 GPK--AVNVSAI 67


>gi|261251425|ref|ZP_05943999.1| cold shock protein CspE [Vibrio orientalis CIP 102891]
 gi|260938298|gb|EEX94286.1| cold shock protein CspE [Vibrio orientalis CIP 102891]
          Length = 69

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H SA+   G   L EGQ V +  V     G
Sbjct: 6  TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAITGDGFRTLVEGQKVEF-VVTTGQKG 60

Query: 64 KYSAENLKLV 73
             AEN+K++
Sbjct: 61 PQ-AENIKVL 69


>gi|222153840|ref|YP_002563017.1| cold shock protein [Streptococcus uberis 0140J]
 gi|222114653|emb|CAR43704.1| cold shock protein [Streptococcus uberis 0140J]
          Length = 67

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+    TE G + F H SA+ + G   L EGQ VT+D V    
Sbjct: 1  MAQGTVKWFNAEKGFGFIS----TEEGQEYFAHFSAIQTKGYKTLDEGQQVTFDIVDGHR 56

Query: 62 NGKYSAENLKLVP 74
               A N+  +P
Sbjct: 57 G--LQAVNITKLP 67


>gi|29830697|ref|NP_825331.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29607810|dbj|BAC71866.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 67

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELQEGQKVNFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|15606511|ref|NP_213891.1| cold shock protein [Aquifex aeolicus VF5]
 gi|6225213|sp|O67327|CSP_AQUAE RecName: Full=Cold shock-like protein
 gi|2983729|gb|AAC07291.1| cold shock protein [Aquifex aeolicus VF5]
          Length = 70

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 5/75 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  RG++KW++ DKGYGFIT E   ++  DVF+H + +   G   L +GQ V +D V++ 
Sbjct: 1  MSFRGTVKWFSKDKGYGFITRE---DTNADVFVHFTDIQMEGFKTLQKGQKVEFDVVEDT 57

Query: 61 ANGKYSAENLKLVPK 75
             +  A+N++++ +
Sbjct: 58 KGPR--AKNVRVLGE 70


>gi|258645332|ref|ZP_05732801.1| putative cold shock protein [Dialister invisus DSM 15470]
 gi|260402681|gb|EEW96228.1| putative cold shock protein [Dialister invisus DSM 15470]
          Length = 66

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++ DKG+GFI  E     G DVF+H SA+ + G   L+EGQ V +D + + A G
Sbjct: 2  KGTVKWFSADKGFGFIERE----EGGDVFVHYSAIQTEGFKTLSEGQKVDFDII-DGARG 56

Query: 64 KYSAENLKLV 73
            +A N+K+V
Sbjct: 57 PQAA-NVKVV 65


>gi|71725895|gb|AAZ39066.1| cold shock protein [Exiguobacterium sibiricum 255-15]
          Length = 67

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  E    +GDDVF+H SA+ + G  +L EGQ V+++ V+    G 
Sbjct: 4  GKVKWFNSEKGFGFIERE----NGDDVFVHFSAIQTDGFKSLDEGQEVSFE-VEEGQRGP 58

Query: 65 YSAENLK 71
           +A   +
Sbjct: 59 QAANVTR 65


>gi|237746308|ref|ZP_04576788.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
          HOxBLS]
 gi|229377659|gb|EEO27750.1| cold-shock DNA-binding family protein [Oxalobacter formigenes
          HOxBLS]
          Length = 67

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G D+F H S +  +G  +LTEGQ V ++      
Sbjct: 1  METGTVKWFNDSKGFGFITPDSH---GADLFAHFSEIQGSGFKSLTEGQKVRFETGAGQK 57

Query: 62 NGKYSAENLKLV 73
               A+N++ V
Sbjct: 58 G--PQAKNIQPV 67


>gi|309702046|emb|CBJ01360.1| cold shock-like protein CspC [Escherichia coli ETEC H10407]
          Length = 69

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDSQKG 60

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 61 P-AAVNVTAI 69


>gi|152975554|ref|YP_001375071.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152024306|gb|ABS22076.1| putative cold-shock DNA-binding domain protein [Bacillus
          cytotoxicus NVH 391-98]
          Length = 67

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ V ++  + +
Sbjct: 1  MTLTGKVKWFNSEKGFGFIEVE----DGNDVFVHFSAITGEGFKTLDEGQEVNFEVEEGN 56

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 57 -RGPQAKNVVKL 67


>gi|190573988|ref|YP_001971833.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
 gi|194365403|ref|YP_002028013.1| cold-shock DNA-binding domain-containing protein
          [Stenotrophomonas maltophilia R551-3]
 gi|254524777|ref|ZP_05136832.1| putative 'Cold-shock' DNA-binding domain protein
          [Stenotrophomonas sp. SKA14]
 gi|190011910|emb|CAQ45531.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
 gi|194348207|gb|ACF51330.1| cold-shock DNA-binding domain protein [Stenotrophomonas
          maltophilia R551-3]
 gi|219722368|gb|EED40893.1| putative 'Cold-shock' DNA-binding domain protein
          [Stenotrophomonas sp. SKA14]
          Length = 69

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFITPE    SG D+F+H  A+   G   L EGQ VT+  VQ   
Sbjct: 4  RQTGTVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKTLQEGQKVTFIAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++ V
Sbjct: 60 G--MQADQVQAV 69


>gi|83647395|ref|YP_435830.1| cold shock protein [Hahella chejuensis KCTC 2396]
 gi|83635438|gb|ABC31405.1| Cold shock protein [Hahella chejuensis KCTC 2396]
          Length = 69

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF H SA+  +G   LTEGQ V +   Q     
Sbjct: 6  TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAITGSGFKTLTEGQKVEFTITQGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 61 -PQAENIVPL 69


>gi|320540284|ref|ZP_08039936.1| putative stress protein, member of the CspA-family [Serratia
          symbiotica str. Tucson]
 gi|320029604|gb|EFW11631.1| putative stress protein, member of the CspA-family [Serratia
          symbiotica str. Tucson]
          Length = 69

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60

Query: 64 KYSAENLKL 72
            +   + +
Sbjct: 61 PSAVNVIAV 69


>gi|163839238|ref|YP_001623643.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
 gi|162952714|gb|ABY22229.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
          Length = 67

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFIT +G    G DVF+H +A+   G  +L EGQ V +D  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFITVDG---DGGDVFVHWAAIEMDGYRSLEEGQRVEFDIGQGQK 57

Query: 62 NGKYSAENLK 71
               AE ++
Sbjct: 58 G--AQAEKVR 65


>gi|240146141|ref|ZP_04744742.1| putative cold shock protein [Roseburia intestinalis L1-82]
 gi|257201740|gb|EEV00025.1| putative cold shock protein [Roseburia intestinalis L1-82]
 gi|291537505|emb|CBL10617.1| cold-shock DNA-binding protein family [Roseburia intestinalis
          M50/1]
 gi|291540033|emb|CBL13144.1| cold-shock DNA-binding protein family [Roseburia intestinalis
          XB6B4]
          Length = 67

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGFI    S E G+DVF+H S +   G  +L EG  V ++ V+   
Sbjct: 1  MNKGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLEEGATVEFEVVEGAK 56

Query: 62 NGKYSAENLKLVP 74
               A N+ +V 
Sbjct: 57 G--PQATNVTVVK 67


>gi|239930668|ref|ZP_04687621.1| cold-shock domain-containing protein [Streptomyces ghanaensis
          ATCC 14672]
 gi|291439030|ref|ZP_06578420.1| cold-shock domain-containing protein [Streptomyces ghanaensis
          ATCC 14672]
 gi|291341925|gb|EFE68881.1| cold-shock domain-containing protein [Streptomyces ghanaensis
          ATCC 14672]
          Length = 67

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVSFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|187925052|ref|YP_001896694.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
 gi|187716246|gb|ACD17470.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans
          PsJN]
          Length = 67

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S + + G  +L E Q V++D V+   
Sbjct: 1  METGIVKWFNDAKGFGFITSDS---GGEDLFAHFSEIRAEGFKSLKENQRVSFD-VKAGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|253990173|ref|YP_003041529.1| cold shock-like protein [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253781623|emb|CAQ84786.1| cold shock-like protein cspc (csp-c) [Photorhabdus asymbiotica]
          Length = 70

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V +   ++ A G
Sbjct: 6  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFTI-ESGAKG 61

Query: 64 KYSAENLKL 72
            +A    +
Sbjct: 62 PAAANVTAI 70


>gi|222056887|ref|YP_002539249.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
 gi|221566176|gb|ACM22148.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
          Length = 66

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +    +G+DVF+H SA+   G  +LTEG+ VT++ VQ   
Sbjct: 1  MANGTVKWFNDSKGFGFIEQD----NGEDVFVHFSAIMGDGFKSLTEGEAVTFE-VQKGP 55

Query: 62 NGKYSAENLK 71
           G  +A  ++
Sbjct: 56 KGLQAANVVR 65


>gi|239978906|ref|ZP_04701430.1| cold shock protein [Streptomyces albus J1074]
 gi|291450789|ref|ZP_06590179.1| cold shock protein [Streptomyces albus J1074]
 gi|291353738|gb|EFE80640.1| cold shock protein [Streptomyces albus J1074]
          Length = 67

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A  G   L EGQ VT+D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAGRGFRELLEGQKVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--LQAENI 64


>gi|163940200|ref|YP_001645084.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229011681|ref|ZP_04168864.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
 gi|229060078|ref|ZP_04197449.1| Cold shock protein cspB [Bacillus cereus AH603]
 gi|229133259|ref|ZP_04262090.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
 gi|229167245|ref|ZP_04294986.1| Cold shock protein cspB [Bacillus cereus AH621]
 gi|163862397|gb|ABY43456.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
 gi|228616283|gb|EEK73367.1| Cold shock protein cspB [Bacillus cereus AH621]
 gi|228650203|gb|EEL06207.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196]
 gi|228719297|gb|EEL70905.1| Cold shock protein cspB [Bacillus cereus AH603]
 gi|228749639|gb|EEL99481.1| Cold shock protein cspB [Bacillus mycoides DSM 2048]
          Length = 67

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI        G DVF+H SA+   G  +L EGQ V+++ V++ 
Sbjct: 1  MTLTGKVKWFNSEKGFGFIE----VADGSDVFVHFSAITGDGFKSLDEGQEVSFE-VEDG 55

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 56 NRGPQAKNVVKL 67


>gi|120556517|ref|YP_960868.1| cold-shock DNA-binding domain-containing protein [Marinobacter
          aquaeolei VT8]
 gi|120326366|gb|ABM20681.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei
          VT8]
 gi|311696264|gb|ADP99137.1| cold shock, CspA [marine bacterium HP15]
          Length = 68

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT E     G DVF+H SA+  +G   L EGQ V +   Q     
Sbjct: 5  TGTVKFFNEAKGFGFITRE----GGPDVFVHYSAIQGSGFKTLAEGQQVEFTVTQGQKG- 59

Query: 64 KYSAENL 70
             AEN+
Sbjct: 60 -PQAENV 65


>gi|107102143|ref|ZP_01366061.1| hypothetical protein PaerPA_01003193 [Pseudomonas aeruginosa
          PACS2]
          Length = 92

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  EG  E   D+F H SA+   G   L  GQ V ++ +Q   
Sbjct: 3  MLSGKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPK 59

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 60 G--LHAINI 66


>gi|153005354|ref|YP_001379679.1| cold-shock DNA-binding domain-containing protein
          [Anaeromyxobacter sp. Fw109-5]
 gi|152028927|gb|ABS26695.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
          sp. Fw109-5]
          Length = 67

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  GS+KW+N  KG+GFI  +G    G+DVF H +A+ S G   L EGQ V ++  Q   
Sbjct: 1  MASGSVKWFNDAKGFGFIQQDG---GGEDVFCHHTAIQSQGFRTLQEGQRVEFEVKQGPK 57

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 58 G--LQAANVRPV 67


>gi|294635687|ref|ZP_06714158.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
 gi|291090958|gb|EFE23519.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
          Length = 71

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +  V+N   G
Sbjct: 6  TGSVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNEFRTLDEGQKVEFS-VENSPKG 61

Query: 64 KYSAENLKL 72
            +   + +
Sbjct: 62 PSAVNVVAI 70


>gi|261210697|ref|ZP_05924989.1| cold shock protein CspD [Vibrio sp. RC341]
 gi|260840182|gb|EEX66762.1| cold shock protein CspD [Vibrio sp. RC341]
          Length = 73

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      D+F H S +   G   L  GQ V+Y   Q   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMDGYRTLKAGQQVSYQVEQG-P 56

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 57 KGYHASCVVPV 67


>gi|229106451|ref|ZP_04236811.1| hypothetical protein bcere0019_53380 [Bacillus cereus Rock3-28]
 gi|228676997|gb|EEL31483.1| hypothetical protein bcere0019_53380 [Bacillus cereus Rock3-28]
          Length = 66

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N DKG+GFI      + G+DVF+H SA+   G  +L EGQ VT++  +   
Sbjct: 1  MEQGKVKWFNADKGFGFIE----RQGGEDVFVHFSAIQIDGYKSLDEGQSVTFEVEKGQR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--LQATNVQ 64


>gi|182677655|ref|YP_001831801.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
          indica subsp. indica ATCC 9039]
 gi|182633538|gb|ACB94312.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 70

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++K++N DKGYGFI P+   + G D+F+H +AV  AGL  L EGQ ++Y+   + 
Sbjct: 1  MSQQGTVKFFNSDKGYGFIKPD---DGGRDIFVHITAVERAGLQALNEGQRLSYEIEPDK 57

Query: 61 ANGKYSAENLKL 72
                A +LK+
Sbjct: 58 KGKGPKAVDLKV 69


>gi|86358607|ref|YP_470499.1| cold shock protein [Rhizobium etli CFN 42]
 gi|116253191|ref|YP_769029.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|190892746|ref|YP_001979288.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|209550323|ref|YP_002282240.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|218663420|ref|ZP_03519350.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771]
 gi|241205705|ref|YP_002976801.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|86282709|gb|ABC91772.1| cold shock protein [Rhizobium etli CFN 42]
 gi|115257839|emb|CAK08937.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|190698025|gb|ACE92110.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|209536079|gb|ACI56014.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|240859595|gb|ACS57262.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|327188379|gb|EGE55596.1| cold shock protein [Rhizobium etli CNPAF512]
          Length = 71

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI P+     G D+F+H SAV ++GL  LTE Q V++D   + 
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPDR---GGADIFVHISAVQASGLAGLTENQKVSFDTEPDR 57

Query: 61 ANGKYSAENLKL 72
                A NL++
Sbjct: 58 RGKGPKAVNLQI 69


>gi|84393766|ref|ZP_00992514.1| cold shock-like protein CspD [Vibrio splendidus 12B01]
 gi|84375628|gb|EAP92527.1| cold shock-like protein CspD [Vibrio splendidus 12B01]
          Length = 73

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      D+F H S +   G   L  GQ V Y+ V++  
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMEGYRTLKAGQQVDYE-VESGP 56

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 57 KGSHASSVVPV 67


>gi|330446014|ref|ZP_08309666.1| cold-shock domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328490205|dbj|GAA04163.1| cold-shock domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 69

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+   G  +L EGQ V++D  Q    G
Sbjct: 5  TGIVKWFNDEKGFGFITQD---NGGADVFVHFRAITGEGFKSLKEGQKVSFDVEQGQ-KG 60

Query: 64 KYSAEN 69
            +A  
Sbjct: 61 PQAANV 66


>gi|302671806|ref|YP_003831766.1| cold shock domain protein CspD1 [Butyrivibrio proteoclasticus
          B316]
 gi|302396279|gb|ADL35184.1| cold shock domain protein CspD1 [Butyrivibrio proteoclasticus
          B316]
          Length = 66

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGFI+     E+G+DVF+H S +   G  +L EG  V YD +Q + 
Sbjct: 1  MNKGTVKWFNNQKGYGFIS----DEAGNDVFVHYSGLNMEGFKSLEEGASVEYDVIQGEK 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--PQAVNVNKL 66


>gi|89074300|ref|ZP_01160790.1| Putative cold shock-like protein cspG [Photobacterium sp. SKA34]
 gi|90578631|ref|ZP_01234441.1| Putative cold shock-like protein cspG [Vibrio angustum S14]
 gi|89050004|gb|EAR55538.1| Putative cold shock-like protein cspG [Photobacterium sp. SKA34]
 gi|90439464|gb|EAS64645.1| Putative cold shock-like protein cspG [Vibrio angustum S14]
          Length = 69

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT +     G DVF+H  A+   G   LTEGQ V+Y+  Q    G
Sbjct: 5  TGTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLTEGQKVSYETEQG-PKG 60

Query: 64 KYSAEN 69
            +A  
Sbjct: 61 LQAANV 66


>gi|330830328|ref|YP_004393280.1| Cold shock-like protein cspE [Aeromonas veronii B565]
 gi|328805464|gb|AEB50663.1| Cold shock-like protein cspE [Aeromonas veronii B565]
          Length = 66

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI  E    +G DVF+H SA+   G   L EGQ V +   Q   
Sbjct: 1  MITGTVKFFNETKGFGFIQQE----NGPDVFVHFSAIQGNGFRTLAEGQRVQFSVTQGQK 56

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 57 G--PQAENVTAL 66


>gi|323493244|ref|ZP_08098373.1| cold shock-like protein CspD [Vibrio brasiliensis LMG 20546]
 gi|323312510|gb|EGA65645.1| cold shock-like protein CspD [Vibrio brasiliensis LMG 20546]
          Length = 73

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      DVF H S +   G   L  GQ V ++ V+   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGED---GDVFAHYSTIKMDGYRTLKAGQQVNFE-VEEGP 56

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 57 KGYHASSVVPV 67


>gi|197284798|ref|YP_002150670.1| cold shock protein [Proteus mirabilis HI4320]
 gi|227357798|ref|ZP_03842147.1| cold shock protein [Proteus mirabilis ATCC 29906]
 gi|194682285|emb|CAR42037.1| cold shock protein [Proteus mirabilis HI4320]
 gi|227162127|gb|EEI47141.1| cold shock protein [Proteus mirabilis ATCC 29906]
          Length = 70

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFITP    +   DVF+H SA+ S    +L EGQ V++   +N   G
Sbjct: 6  TGTVKWFNDDKGFGFITP---KDGSKDVFVHYSAIQSDDFKSLMEGQEVSFTM-ENGMKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PAAGNVVAL 70


>gi|170693647|ref|ZP_02884805.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
 gi|170141429|gb|EDT09599.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
          Length = 67

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S + S G  +L E Q V++D V+   
Sbjct: 1  METGIVKWFNDAKGFGFITSDS---GGEDLFAHFSEIRSEGFKSLKENQRVSFD-VKAGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|29830990|ref|NP_825624.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29608104|dbj|BAC72159.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 67

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ V +D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVNFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|322417715|ref|YP_004196938.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
          M18]
 gi|320124102|gb|ADW11662.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
          Length = 66

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI  E    +G+DVF+H SA+ S G  +L EG  VT+D VQ   
Sbjct: 1  MAKGVVKWFNDSKGFGFIEQE----NGEDVFVHFSAIQSDGFKSLAEGDSVTFD-VQQGP 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGLQAANVTRV 66


>gi|148360957|ref|YP_001252164.1| cold shock protein CspD [Legionella pneumophila str. Corby]
 gi|148282730|gb|ABQ56818.1| cold shock protein CspD [Legionella pneumophila str. Corby]
          Length = 77

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N  KG+GFI PEG    G+D+F+H S++   G   L  GQ VTYD V N  
Sbjct: 1  MARGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLAPGQAVTYDVV-NGE 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G +++  + L   +  
Sbjct: 57 RGLHASNVVALSENAEQ 73


>gi|297560839|ref|YP_003679813.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296845287|gb|ADH67307.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 70

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KGYGFITPE    SG D+F+H  A+   G  +L EGQ V+++ VQ   
Sbjct: 4  RQTGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGTGFKSLQEGQTVSFEAVQGQK 59

Query: 62 NGKYSAENLKL 72
               A+ +++
Sbjct: 60 G--MQADKVQV 68


>gi|209547434|ref|YP_002279352.1| cold-shock DNA-binding domain-containing protein [Rhizobium
          leguminosarum bv. trifolii WSM2304]
 gi|209538678|gb|ACI58612.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 67

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKG+GFITPE   + G DVF+H SA+   G  +L EG  V++D  Q+  
Sbjct: 1  MPTGTVKFFNDDKGFGFITPE---DGGQDVFVHVSALQRGG--SLREGDKVSFDVGQDRK 55

Query: 62 NGKYSAENLKLV 73
           GK  AEN+  +
Sbjct: 56 TGKSKAENVSTL 67


>gi|85059078|ref|YP_454780.1| cold shock-like protein [Sodalis glossinidius str. 'morsitans']
 gi|84779598|dbj|BAE74375.1| cold shock-like protein [Sodalis glossinidius str. 'morsitans']
          Length = 73

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI PE     G+D+F H S +   G   L  GQ+V ++  Q   
Sbjct: 1  METGKVKWFNNAKGFGFICPE---NGGEDIFAHYSMIHMDGYRTLKAGQVVRFEVHQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|237808041|ref|YP_002892481.1| cold-shock DNA-binding domain-containing protein [Tolumonas
          auensis DSM 9187]
 gi|237500302|gb|ACQ92895.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM
          9187]
          Length = 68

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KW+N  KG+GFI  +     G DVF+H  A+ S G   L EGQ V +   Q   
Sbjct: 3  VRTGKVKWFNEAKGFGFIQQD----EGPDVFVHFRAINSTGFKTLAEGQRVQFTVTQGQK 58

Query: 62 NGKYSAENLKLV 73
               AEN+ ++
Sbjct: 59 G--PQAENVTVL 68


>gi|146342873|ref|YP_001207921.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278]
 gi|146195679|emb|CAL79706.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278]
          Length = 71

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +LTEGQ ++++   + 
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57

Query: 61 ANGKYSAENLKL 72
                A NL L
Sbjct: 58 KGKGPKAVNLVL 69


>gi|91784878|ref|YP_560084.1| cold-shock DNA-binding protein family protein [Burkholderia
          xenovorans LB400]
 gi|296160038|ref|ZP_06842858.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
 gi|91688832|gb|ABE32032.1| cold-shock DNA-binding protein family [Burkholderia xenovorans
          LB400]
 gi|295889784|gb|EFG69582.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1]
          Length = 67

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S + + G  +L E Q V++D V+   
Sbjct: 1  METGIVKWFNDAKGFGFITSDS---GGEDLFAHFSEIRADGFKSLKENQRVSFD-VKAGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|260598404|ref|YP_003210975.1| RNA chaperone/anti-terminator [Cronobacter turicensis z3032]
 gi|260217581|emb|CBA31827.1| Cold shock protein cspA [Cronobacter turicensis z3032]
          Length = 70

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP    +   DVF+H SA+ S     L EGQ V++   +N A G
Sbjct: 6  TGLVKWFNADKGFGFITP---NDGSKDVFVHFSAIQSDNFKTLDEGQQVSFTI-ENGAKG 61

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 62 P-AAGNVTPL 70


>gi|148253260|ref|YP_001237845.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
          BTAi1]
 gi|146405433|gb|ABQ33939.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
          Length = 71

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +L+EGQ ++++   + 
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLSEGQRISFEVEPDK 57

Query: 61 ANGKYSAENLKL 72
                A NL L
Sbjct: 58 KGKGPKAVNLVL 69


>gi|114562869|ref|YP_750382.1| cold-shock DNA-binding domain-containing protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114334162|gb|ABI71544.1| cold-shock DNA-binding protein family [Shewanella frigidimarina
          NCIMB 400]
 gi|149675700|dbj|BAF64729.1| cold shock protein [Shewanella livingstonensis]
          Length = 68

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI  E    SG DVF+H  A+ S G   L EGQ V++   Q     
Sbjct: 5  TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+ +V
Sbjct: 60 -PQAENVSIV 68


>gi|239981276|ref|ZP_04703800.1| cold shock protein [Streptomyces albus J1074]
 gi|291453133|ref|ZP_06592523.1| cold shock protein [Streptomyces albus J1074]
 gi|291356082|gb|EFE82984.1| cold shock protein [Streptomyces albus J1074]
          Length = 67

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +++ G   L EGQ V++D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNISAQGFRELIEGQKVSFDVTQGQK 57

Query: 62 NGKYSAENLKL 72
               AEN+ +
Sbjct: 58 G--PQAENIVV 66


>gi|146283383|ref|YP_001173536.1| cold acclimation protein B [Pseudomonas stutzeri A1501]
 gi|146308538|ref|YP_001189003.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina ymp]
 gi|145571588|gb|ABP80694.1| cold acclimation protein B [Pseudomonas stutzeri A1501]
 gi|145576739|gb|ABP86271.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
 gi|327481776|gb|AEA85086.1| cold acclimation protein B [Pseudomonas stutzeri DSM 4166]
          Length = 70

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ V++  VQ   
Sbjct: 4  RQNGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQKVSFIAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++++
Sbjct: 60 G--MQADQVQIL 69


>gi|153950481|ref|YP_001399368.1| cold shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|152961976|gb|ABS49437.1| cold shock DNA-binding domain protein [Yersinia
          pseudotuberculosis IP 31758]
          Length = 70

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVIAL 70


>gi|192360440|ref|YP_001982658.1| cold shock protein-like protein [Cellvibrio japonicus Ueda107]
 gi|190686605|gb|ACE84283.1| cold shock protein-related protein [Cellvibrio japonicus Ueda107]
          Length = 78

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      ESG DVF+H SA++ +G   L EGQ V +D        
Sbjct: 15 TGTVKWFNESKGFGFIA----AESGQDVFVHYSAISGSGFKTLAEGQRVEFDVKPGQKG- 69

Query: 64 KYSAENLK 71
             AEN+ 
Sbjct: 70 -PQAENVT 76


>gi|148266031|ref|YP_001232737.1| cold-shock DNA-binding domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146399531|gb|ABQ28164.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
          Rf4]
          Length = 66

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  E    +G+DVF+H SA+   G  +L EG  VT+D   N  
Sbjct: 1  MANGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAITGDGFKSLAEGDRVTFDVT-NGP 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGLQAANVTRV 66


>gi|262278327|ref|ZP_06056112.1| cold shock protein [Acinetobacter calcoaceticus RUH2202]
 gi|299769266|ref|YP_003731292.1| cold shock protein [Acinetobacter sp. DR1]
 gi|262258678|gb|EEY77411.1| cold shock protein [Acinetobacter calcoaceticus RUH2202]
 gi|298699354|gb|ADI89919.1| cold shock protein [Acinetobacter sp. DR1]
          Length = 71

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI PE    SG DVF H S +A++G   L EGQ V +   Q   
Sbjct: 6  IMKGTVKWFNEAKGFGFIQPE----SGPDVFAHFSEIANSGFRTLAEGQRVEFSVAQGQ- 60

Query: 62 NGKYSAENLKL 72
           G  +   + L
Sbjct: 61 KGPNAVNIVAL 71


>gi|260886462|ref|ZP_05897725.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
 gi|330839687|ref|YP_004414267.1| cold-shock DNA-binding domain protein [Selenomonas sputigena ATCC
          35185]
 gi|260863801|gb|EEX78301.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
 gi|329747451|gb|AEC00808.1| cold-shock DNA-binding domain protein [Selenomonas sputigena ATCC
          35185]
          Length = 66

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KGYGFI  E     GDDVF+H SA+   G   L EGQ V ++ V+  A G 
Sbjct: 3  GKVKWFSAEKGYGFIERE----DGDDVFVHFSAIQGDGFKTLAEGQGVEFEIVEG-ARGP 57

Query: 65 YSAENLK 71
           ++  +K
Sbjct: 58 QASNVVK 64


>gi|194290614|ref|YP_002006521.1| cold shock protein, RNA chaperone, transcription antiterminator,
          affects expression of rpos and uspa [Cupriavidus
          taiwanensis LMG 19424]
 gi|193224449|emb|CAQ70460.1| cold shock protein, RNA chaperone, transcription antiterminator,
          affects expression of rpoS and uspA [Cupriavidus
          taiwanensis LMG 19424]
          Length = 68

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+   E  +++F H SA+  AG   L EGQ V+++ VQ   
Sbjct: 1  MASGIVKWFNDAKGFGFIKPD---EGEEELFAHFSAIQMAGFKTLKEGQRVSFEVVQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQATNIQ 65


>gi|27550093|gb|AAO18076.1| unknown [Photorhabdus luminescens]
          Length = 71

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V++   +N A G
Sbjct: 6  TGSVKWFNNDKGFGFISP---KDGSKDVFVHYSAIQSNNFKTLEEGQEVSFSI-ENGAKG 61

Query: 64 KYSAENLKLV 73
            SA N+ ++
Sbjct: 62 P-SAVNVIVL 70


>gi|331700130|ref|YP_004336369.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326954819|gb|AEA28516.1| cold-shock DNA-binding domain protein [Pseudonocardia
          dioxanivorans CB1190]
          Length = 67

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +G    G DVF+H S + ++G  +L EGQ V ++  Q   
Sbjct: 1  MAQGTVKWFNGEKGFGFIQQDG---GGADVFVHYSEIDASGFRSLDEGQRVEFEVGQG-K 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPQA 61


>gi|153814427|ref|ZP_01967095.1| hypothetical protein RUMTOR_00637 [Ruminococcus torques ATCC
          27756]
 gi|145848823|gb|EDK25741.1| hypothetical protein RUMTOR_00637 [Ruminococcus torques ATCC
          27756]
          Length = 70

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFI+       G+D+F+H S +   G   L EGQ V ++  +  A G
Sbjct: 7  TGTVKWFNNQKGYGFIS----DSEGNDIFVHYSGLVMDGFKTLEEGQAVEFEVTEG-AKG 61

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 62 PQATNVVKL 70


>gi|119963512|ref|YP_948311.1| cold shock protein [Arthrobacter aurescens TC1]
 gi|119950371|gb|ABM09282.1| putative cold shock protein [Arthrobacter aurescens TC1]
          Length = 95

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFITP+ +     DVF+H S + + G   L E Q V ++  Q   
Sbjct: 29 MALGTVKWFNAEKGFGFITPDDAD---GDVFVHYSEIQTGGFKTLDENQRVQFEIGQGAK 85

Query: 62 NGKYSAENLKLV 73
               A  + +V
Sbjct: 86 G--PQATGVTVV 95


>gi|330872660|gb|EGH06809.1| cold-shock protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 106

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 39  TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 93

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 94  LQAEDVIAALPR 105


>gi|194293032|ref|YP_002008939.1| cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
 gi|193226936|emb|CAQ72887.1| Cold shock-like protein [Cupriavidus taiwanensis LMG 19424]
          Length = 67

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+     GDD+F H S + + G  +L E Q V ++ V+N  
Sbjct: 1  MQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEIRAEGFKSLQENQRVQFE-VKNGP 56

Query: 62 NGKYSAE 68
           G  +A 
Sbjct: 57 KGLQAAN 63


>gi|78221561|ref|YP_383308.1| cold-shock DNA-binding protein family protein [Geobacter
          metallireducens GS-15]
 gi|78192816|gb|ABB30583.1| cold-shock DNA-binding protein family [Geobacter metallireducens
          GS-15]
          Length = 66

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  E    +G+DVF+H SA+   G  +LTEG  VT+D V+   
Sbjct: 1  MANGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAINGDGFKSLTEGDRVTFDVVKG-P 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGLQAANVTRV 66


>gi|26249026|ref|NP_755066.1| cold shock-like protein cspB [Escherichia coli CFT073]
 gi|218551643|ref|YP_002385435.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
          35469]
 gi|218561570|ref|YP_002394483.1| cold shock protein; Qin prophage [Escherichia coli S88]
 gi|300925265|ref|ZP_07141160.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|331680503|ref|ZP_08381162.1| conserved domain protein [Escherichia coli H591]
 gi|26109433|gb|AAN81636.1|AE016765_38 Cold shock-like protein cspB [Escherichia coli CFT073]
 gi|218359185|emb|CAQ91849.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
          35469]
 gi|218368339|emb|CAR06158.1| cold shock protein; Qin prophage [Escherichia coli S88]
 gi|300418598|gb|EFK01909.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|323190390|gb|EFZ75666.1| cold shock-like protein cspG [Escherichia coli RN587/1]
 gi|324112033|gb|EGC06011.1| cold-shock DNA-binding domain-containing protein [Escherichia
          fergusonii B253]
 gi|331071966|gb|EGI43302.1| conserved domain protein [Escherichia coli H591]
          Length = 71

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   DVF+H SA+ +     L EGQ VT+  V++ A G
Sbjct: 6  TGLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNFRTLFEGQKVTFS-VESGAKG 61

Query: 64 KYSAENL 70
            +A  +
Sbjct: 62 PAAANVI 68


>gi|37527652|ref|NP_930996.1| cold shock-like protein (CPS-I) [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36787087|emb|CAE16162.1| cold shock-like protein (CPS-I) [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 71

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V++   +N A G
Sbjct: 6  TGSVKWFNNDKGFGFISP---KDGSKDVFVHYSAIQSNNFKTLEEGQEVSFSI-ENGAKG 61

Query: 64 KYSAENLKLV 73
            SA N+ ++
Sbjct: 62 P-SAVNVIVL 70


>gi|94314735|ref|YP_587944.1| major cold shock protein [Cupriavidus metallidurans CH34]
 gi|93358587|gb|ABF12675.1| major cold shock protein [Cupriavidus metallidurans CH34]
          Length = 67

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+     GDD+F H S V + G  +L E Q V+++ V+N  
Sbjct: 1  MQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEVRADGFKSLQENQRVSFE-VKNGP 56

Query: 62 NGKYSAE 68
           G  +A 
Sbjct: 57 KGLQAAN 63


>gi|331016432|gb|EGH96488.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 106

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 39  TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 93

Query: 64  KYSAENLKLVPK 75
             + + +  +P+
Sbjct: 94  LQAEDVIAALPR 105


>gi|329888180|ref|ZP_08266778.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
          ATCC 11568]
 gi|328846736|gb|EGF96298.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta
          ATCC 11568]
          Length = 67

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP KG+GFI P+     G DVF+H +AV  AGL  L +   V Y+      
Sbjct: 1  MATGTVKWFNPTKGFGFIQPDT---GGADVFVHITAVQKAGLVGLDDNAKVEYEL--ETQ 55

Query: 62 NGKYSAENLKLV 73
           GK SA +LKL+
Sbjct: 56 RGKTSAVDLKLL 67


>gi|320009867|gb|ADW04717.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
          Length = 67

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQEG---GGADVFAHYSNIAAQGFRELQEGQKVNFDVTQGQK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENIT 65


>gi|148266390|ref|YP_001233096.1| cold-shock DNA-binding domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146399890|gb|ABQ28523.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
          Rf4]
          Length = 66

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +    +GDDVF+H SA+   G  +L EG+ VT++ VQ   
Sbjct: 1  MANGTVKWFNDSKGFGFIEQD----NGDDVFVHFSAIMGDGFKSLAEGEAVTFE-VQKGP 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGLQAANVNRV 66


>gi|207722622|ref|YP_002253058.1| cold shock-like protein [Ralstonia solanacearum MolK2]
 gi|300696567|ref|YP_003747228.1| Cold shock DNA binding protein (transcriptional regulator)
          [Ralstonia solanacearum CFBP2957]
 gi|206587804|emb|CAQ18386.1| cold shock-like protein [Ralstonia solanacearum MolK2]
 gi|299073291|emb|CBJ52800.1| Cold shock DNA binding protein (transcription regulator)
          [Ralstonia solanacearum CFBP2957]
          Length = 67

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+G    G D+F H S +  AG   L +GQ V+++  Q   
Sbjct: 1  MATGTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGAGFKTLKDGQKVSFEVKQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|253699301|ref|YP_003020490.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
 gi|251774151|gb|ACT16732.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
          Length = 66

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  +    +G DVF+H S++   G  +L EG  VT+D VQ  A
Sbjct: 1  MANGVVKWFNDAKGFGFIEQD----NGVDVFVHFSSIQGDGFKSLVEGDAVTFDVVQG-A 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 KGPQAANVVK 65


>gi|25026862|ref|NP_736916.1| putative cold shock protein [Corynebacterium efficiens YS-314]
 gi|259506076|ref|ZP_05748978.1| cold shock protein [Corynebacterium efficiens YS-314]
 gi|23492142|dbj|BAC17116.1| putative cold shock protein [Corynebacterium efficiens YS-314]
 gi|259166364|gb|EEW50918.1| cold shock protein [Corynebacterium efficiens YS-314]
          Length = 67

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+NP+KG+GFI P   ++   DVF+H S +   G   L E QLV ++  +   
Sbjct: 1  MAQGTVKWFNPEKGFGFIAP---SDGSADVFVHYSEIEGNGFRTLEENQLVEFEIGEGAK 57

Query: 62 NGKYSAENLKLV 73
               A++++ V
Sbjct: 58 G--LQAQSVRAV 67


>gi|167838062|ref|ZP_02464921.1| cold-shock domain family protein [Burkholderia thailandensis
          MSMB43]
          Length = 67

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITPEG    G+D+F H S +   G   L E Q V ++ V+   
Sbjct: 1  MAIGTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRVDGFKTLQENQKVEFE-VKTGP 56

Query: 62 NGKYSAENLKLV 73
           G  +A N+K +
Sbjct: 57 KGLQAA-NIKPL 67


>gi|330810595|ref|YP_004355057.1| transcription factor, Csd family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327378703|gb|AEA70053.1| putative Transcription factor, Csd family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 70

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ V++   +   
Sbjct: 4  RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAEKGQ 59

Query: 62 NGKYSAEN 69
           G  +A+ 
Sbjct: 60 KGMQAAQV 67


>gi|310287193|ref|YP_003938451.1| Cold shock protein [Bifidobacterium bifidum S17]
 gi|313139892|ref|ZP_07802085.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          bifidum NCIMB 41171]
 gi|309251129|gb|ADO52877.1| Cold shock protein [Bifidobacterium bifidum S17]
 gi|313132402|gb|EFR50019.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          bifidum NCIMB 41171]
          Length = 89

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K+++  KGYGFIT +     GDDVF+H S + + G   L EG  V Y+  +   
Sbjct: 23 MAQGTVKFFSAGKGYGFITSDA---GGDDVFVHYSVIQADGFKTLNEGDKVEYE-AERGP 78

Query: 62 NGKYSAENLKL 72
           G  + + +KL
Sbjct: 79 KGMQATKVVKL 89


>gi|302822137|ref|XP_002992728.1| hypothetical protein SELMODRAFT_186937 [Selaginella
          moellendorffii]
 gi|300139469|gb|EFJ06209.1| hypothetical protein SELMODRAFT_186937 [Selaginella
          moellendorffii]
          Length = 159

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   + G+D+F+H+S++ + G  +L +G+ V +   +++ +G+
Sbjct: 10 GKVKWFNSAKGFGFITPD---DGGEDLFVHQSSIHADGFRSLKDGEAVEFTIDRSE-DGR 65

Query: 65 YSAENLK 71
            A ++ 
Sbjct: 66 TKALDVT 72


>gi|126731842|ref|ZP_01747646.1| cold shock protein CspA [Sagittula stellata E-37]
 gi|126707669|gb|EBA06731.1| cold shock protein CspA [Sagittula stellata E-37]
          Length = 68

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE       DVFLH SAV  AG+  + +GQ VT+D V++  
Sbjct: 1  MANGTVKWFNSTKGFGFIQPEH---GSKDVFLHISAVERAGINRIEDGQAVTFD-VESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRESAINLAL 67


>gi|296132465|ref|YP_003639712.1| cold-shock DNA-binding domain protein [Thermincola sp. JR]
 gi|296031043|gb|ADG81811.1| cold-shock DNA-binding domain protein [Thermincola potens JR]
          Length = 65

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI       +G DVF+H SA+ + G   L EG+ V +D VQ +  G
Sbjct: 2  EGTVKWFNAEKGFGFIE----ASNGSDVFVHFSAIQNEGFKTLEEGEKVFFDIVQGN-RG 56

Query: 64 KYSAENLK 71
            +A  ++
Sbjct: 57 PQAANVVR 64


>gi|188586202|ref|YP_001917747.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179350889|gb|ACB85159.1| cold-shock DNA-binding protein family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++  KGYGFI  E       DVF+H SA+   G  +L +GQ V ++ V+ D 
Sbjct: 1  MTTGTVKWFDSKKGYGFIERESGE---GDVFVHFSAINEEGFKSLEDGQEVEFEVVEAD- 56

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 57 RGPQAANVNKL 67


>gi|167563689|ref|ZP_02356605.1| cold-shock domain family protein [Burkholderia oklahomensis
          EO147]
 gi|167570839|ref|ZP_02363713.1| cold-shock domain family protein [Burkholderia oklahomensis
          C6786]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V+++ V+   
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIKMDGFKTLKENQRVSFE-VKTGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|241554075|ref|YP_002979288.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240863381|gb|ACS61043.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKG+GFITPE     G DVF+H SA+   G  +L EG  V+++  Q+  
Sbjct: 1  MATGTVKFFNDDKGFGFITPE---NGGQDVFVHVSALQRGG--SLREGDKVSFEVGQDRK 55

Query: 62 NGKYSAENLKLV 73
           GK  AEN+ ++
Sbjct: 56 TGKSKAENVSVL 67


>gi|259416628|ref|ZP_05740548.1| conserved domain protein [Silicibacter sp. TrichCH4B]
 gi|259348067|gb|EEW59844.1| conserved domain protein [Silicibacter sp. TrichCH4B]
          Length = 68

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   +   DVFLH SAV  AG+  + +GQ VTYD  ++  
Sbjct: 1  MANGTVKWFNSTKGFGFIQPE---DGTQDVFLHVSAVERAGINRIDDGQKVTYDL-ESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA NL L
Sbjct: 57 DGRTSASNLAL 67


>gi|323342986|ref|ZP_08083217.1| cold shock protein CspA [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463050|gb|EFY08245.1| cold shock protein CspA [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 66

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N +KGYGFIT     E G D+F+H SA+ + G   L EGQ V+++ V+   
Sbjct: 1  MSTGKVKFFNAEKGYGFIT----IEGGQDIFVHYSAIVADGYKTLEEGQEVSFEVVEGPR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--EQAANVR 64


>gi|222086573|ref|YP_002545107.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221724021|gb|ACM27177.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 71

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI P+   + G D+F+H SAV ++GL  L+E Q V++D   + 
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPD---KGGADIFVHISAVQASGLAGLSENQKVSFDTEPDR 57

Query: 61 ANGKYSAENLKL 72
                A NL++
Sbjct: 58 RGKGPKAVNLQI 69


>gi|83858279|ref|ZP_00951801.1| cold-shock domain family protein [Oceanicaulis alexandrii
          HTCC2633]
 gi|83853102|gb|EAP90954.1| cold-shock domain family protein [Oceanicaulis alexandrii
          HTCC2633]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI P+   +   DVF+H SAV  AG+  L EGQ ++++   +  
Sbjct: 1  MATGIVKWFNSTKGYGFIQPD---DGSKDVFVHASAVERAGMPELKEGQRISFEEEVDKR 57

Query: 62 NGKYSAENL 70
          +GK SA +L
Sbjct: 58 SGKTSAGSL 66


>gi|323483687|ref|ZP_08089070.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14163]
 gi|323692654|ref|ZP_08106885.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14673]
 gi|323403023|gb|EGA95338.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14163]
 gi|323503291|gb|EGB19122.1| cold-shock DNA-binding domain-containing protein [Clostridium
          symbiosum WAL-14673]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGFI+     E G+D+F+H S +A  G   L +GQ V+++  +   
Sbjct: 1  MNKGTVKWFNSQKGYGFIS----DEQGNDIFVHFSGLAMDGYKTLEDGQSVSFEVTEGAR 56

Query: 62 NGKYSAENLKL 72
               A N+ +
Sbjct: 57 G--LQAVNVTV 65


>gi|171058345|ref|YP_001790694.1| cold-shock DNA-binding domain-containing protein [Leptothrix
          cholodnii SP-6]
 gi|170775790|gb|ACB33929.1| cold-shock DNA-binding domain protein [Leptothrix cholodnii SP-6]
          Length = 79

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N  KG+GFI PE   E G+DVF H SA+   G   L +G  V +D V +  
Sbjct: 1  MPRGIVKWFNDVKGFGFIEPE---EGGEDVFAHFSAIQMEGFRTLKQGSSVDFDLV-DGP 56

Query: 62 NGKYSAENLK 71
           GK  A+N++
Sbjct: 57 KGKL-AQNIR 65


>gi|222054862|ref|YP_002537224.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
 gi|221564151|gb|ACM20123.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
          Length = 66

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GF+  E    +G+DVF+H SA+   G  +LTEG  VT+D  +   
Sbjct: 1  MEKGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAITGDGFKSLTEGDKVTFDVTRG-P 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGLQAANVTRM 66


>gi|331002349|ref|ZP_08325867.1| cold shock-like protein cspLB [Lachnospiraceae oral taxon 107
          str. F0167]
 gi|330410165|gb|EGG89599.1| cold shock-like protein cspLB [Lachnospiraceae oral taxon 107
          str. F0167]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++RG++KW+N  KGYGFI    S E G DVF+H S +   G   L EG  V YD  +   
Sbjct: 1  MNRGTVKWFNNQKGYGFI----SDEGGSDVFVHFSDLNMEGFKTLDEGISVEYDLTEGAK 56

Query: 62 NGKYSAENLKLV 73
               A N+ +V
Sbjct: 57 G--PQAVNVTVV 66


>gi|317500145|ref|ZP_07958378.1| cold shock protein CspA [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087628|ref|ZP_08336556.1| cold shock-like protein cspC [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|316898434|gb|EFV20472.1| cold shock protein CspA [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330399807|gb|EGG79467.1| cold shock-like protein cspC [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 65

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFI+       G+D+F+H S +   G   L EGQ V ++  +  A G
Sbjct: 2  TGTVKWFNNQKGYGFIS----DSEGNDIFVHYSGLVMDGFKTLEEGQAVEFEVTEG-AKG 56

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 57 PQATNVVKL 65


>gi|296135805|ref|YP_003643047.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12]
 gi|294339970|emb|CAZ88333.1| Cold shock protein [Thiomonas sp. 3As]
 gi|295795927|gb|ADG30717.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   E G+D+F H S + + G   L E Q V +       
Sbjct: 1  MATGTVKWFNESKGFGFIKPD---EGGEDLFAHFSEIQAKGFRTLQENQRVEFTVKAGPK 57

Query: 62 NGKYSA 67
            + SA
Sbjct: 58 GPQASA 63


>gi|70731246|ref|YP_260987.1| cold shock domain-containing protein CspD [Pseudomonas
          fluorescens Pf-5]
 gi|68345545|gb|AAY93151.1| cold shock domain protein CspD [Pseudomonas fluorescens Pf-5]
          Length = 85

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  EG T+   D+F H SA+   G   L  GQ V+++ +Q   
Sbjct: 1  MASGKVKWFNNAKGYGFINEEGKTD---DLFAHYSAIDMDGYKTLKAGQAVSFEIIQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|330504702|ref|YP_004381571.1| cold-shock domain-containing protein [Pseudomonas mendocina
          NK-01]
 gi|328918988|gb|AEB59819.1| cold-shock domain-containing protein [Pseudomonas mendocina
          NK-01]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ V++  VQ   
Sbjct: 4  RQNGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQKVSFVAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++++
Sbjct: 60 G--MQADQVQIL 69


>gi|302824155|ref|XP_002993723.1| hypothetical protein SELMODRAFT_187582 [Selaginella
          moellendorffii]
 gi|300138447|gb|EFJ05215.1| hypothetical protein SELMODRAFT_187582 [Selaginella
          moellendorffii]
          Length = 165

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITP+   + G+D+F+H+S++ + G  +L +G+ V +   +++ +G+
Sbjct: 10 GKVKWFNSAKGFGFITPD---DGGEDLFVHQSSIHADGFRSLKDGEAVEFTIDRSE-DGR 65

Query: 65 YSAENLK 71
            A ++ 
Sbjct: 66 TKALDVT 72


>gi|146318066|ref|YP_001197778.1| cold shock protein [Streptococcus suis 05ZYH33]
 gi|146320244|ref|YP_001199955.1| cold shock protein [Streptococcus suis 98HAH33]
 gi|253751260|ref|YP_003024401.1| cold shock protein [Streptococcus suis SC84]
 gi|253753161|ref|YP_003026301.1| cold shock protein [Streptococcus suis P1/7]
 gi|253754984|ref|YP_003028124.1| cold shock protein [Streptococcus suis BM407]
 gi|145688872|gb|ABP89378.1| Cold shock protein [Streptococcus suis 05ZYH33]
 gi|145691050|gb|ABP91555.1| Cold shock protein [Streptococcus suis 98HAH33]
 gi|251815549|emb|CAZ51132.1| cold shock protein [Streptococcus suis SC84]
 gi|251817448|emb|CAZ55189.1| cold shock protein [Streptococcus suis BM407]
 gi|251819406|emb|CAR44864.1| cold shock protein [Streptococcus suis P1/7]
 gi|292557828|gb|ADE30829.1| Cold shock protein [Streptococcus suis GZ1]
 gi|319757539|gb|ADV69481.1| cold shock protein [Streptococcus suis JS14]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E    +G DVF H S + S G  +L +GQ VT++  Q   
Sbjct: 1  MVQGTVKWFNAEKGFGFIAQE----NGPDVFAHFSEIQSNGFKSLEDGQKVTFEVEQGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--LQATNITKI 66


>gi|226531123|ref|NP_001151606.1| LOC100285240 [Zea mays]
 gi|195638850|gb|ACG38893.1| glycine-rich protein 2b [Zea mays]
          Length = 208

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   +  +D+F+H+S++ S G  +L +G  V Y    +  +G+
Sbjct: 8  GTVKWFNGTKGFGFITPD---DGSEDLFVHQSSIKSDGYRSLNDGDAVEYTVG-SGNDGR 63

Query: 65 YSAENLK 71
            A ++ 
Sbjct: 64 AKALDVT 70


>gi|195609518|gb|ACG26589.1| glycine-rich protein 2b [Zea mays]
          Length = 208

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   +  +D+F+H+S++ S G  +L +G  V Y    +  +G+
Sbjct: 8  GTVKWFNGTKGFGFITPD---DGSEDLFVHQSSIKSDGYRSLNDGDAVEYTVG-SGNDGR 63

Query: 65 YSAENLK 71
            A ++ 
Sbjct: 64 AKALDVT 70


>gi|154502556|ref|ZP_02039616.1| hypothetical protein RUMGNA_00369 [Ruminococcus gnavus ATCC
          29149]
 gi|153796748|gb|EDN79168.1| hypothetical protein RUMGNA_00369 [Ruminococcus gnavus ATCC
          29149]
          Length = 65

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFI+       G+DVF+H S +   G  +L EGQ V ++  +  A G
Sbjct: 2  TGTVKWFNNQKGYGFIS----DSEGNDVFVHYSGLVMDGFKSLEEGQAVEFEVTEG-AKG 56

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 57 PQATNVVKL 65


>gi|113869008|ref|YP_727497.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|113527784|emb|CAJ94129.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
          Length = 68

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+   E  +++F H SA+  +G   L EGQ V+++ VQ   
Sbjct: 1  MASGIVKWFNDAKGFGFIKPD---EGEEELFAHFSAIQMSGFKTLKEGQRVSFEVVQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQATNIQ 65


>gi|313896973|ref|ZP_07830520.1| 7.4 kDa cold shock protein [Selenomonas sp. oral taxon 137 str.
          F0430]
 gi|320530494|ref|ZP_08031552.1| cold-shock DNA-binding domain protein [Selenomonas artemidis
          F0399]
 gi|312974420|gb|EFR39888.1| 7.4 kDa cold shock protein [Selenomonas sp. oral taxon 137 str.
          F0430]
 gi|320137327|gb|EFW29251.1| cold-shock DNA-binding domain protein [Selenomonas artemidis
          F0399]
          Length = 66

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++ DKGYGFI+ +     GDDVF+H S++   G   L+EGQ V +D V+  A G
Sbjct: 2  TGKVKWFSADKGYGFISRD----DGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVEG-ARG 56

Query: 64 KYSAENLK 71
            +   +K
Sbjct: 57 PQADNVVK 64


>gi|300718875|ref|YP_003743678.1| Cold-shock DNA-binding protein family [Erwinia billingiae Eb661]
 gi|299064711|emb|CAX61831.1| Cold-shock DNA-binding protein family [Erwinia billingiae Eb661]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+PE   +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFNSDKGFGFISPE---DGSKDVFVHFSAIQSNDFKTLDEGQKVEFTI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAGNVVAL 70


>gi|148378284|ref|YP_001252825.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932083|ref|YP_001382685.1| cold shock protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937821|ref|YP_001386236.1| cold shock protein [Clostridium botulinum A str. Hall]
 gi|153940157|ref|YP_001389651.1| cold shock protein [Clostridium botulinum F str. Langeland]
 gi|168177625|ref|ZP_02612289.1| cold shock protein [Clostridium botulinum NCTC 2916]
 gi|168182105|ref|ZP_02616769.1| cold shock protein [Clostridium botulinum Bf]
 gi|170755331|ref|YP_001779935.1| cold shock protein [Clostridium botulinum B1 str. Okra]
 gi|187777110|ref|ZP_02993583.1| hypothetical protein CLOSPO_00655 [Clostridium sporogenes ATCC
          15579]
 gi|226947506|ref|YP_002802597.1| cold shock protein [Clostridium botulinum A2 str. Kyoto]
 gi|237793603|ref|YP_002861155.1| cold shock protein [Clostridium botulinum Ba4 str. 657]
 gi|148287768|emb|CAL81834.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928127|gb|ABS33627.1| cold shock protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933735|gb|ABS39234.1| cold shock protein [Clostridium botulinum A str. Hall]
 gi|152936053|gb|ABS41551.1| cold shock protein [Clostridium botulinum F str. Langeland]
 gi|169120543|gb|ACA44379.1| cold shock protein [Clostridium botulinum B1 str. Okra]
 gi|182670885|gb|EDT82859.1| cold shock protein [Clostridium botulinum NCTC 2916]
 gi|182674516|gb|EDT86477.1| cold shock protein [Clostridium botulinum Bf]
 gi|187774038|gb|EDU37840.1| hypothetical protein CLOSPO_00655 [Clostridium sporogenes ATCC
          15579]
 gi|226842860|gb|ACO85526.1| cold shock protein [Clostridium botulinum A2 str. Kyoto]
 gi|229261379|gb|ACQ52412.1| cold shock protein [Clostridium botulinum Ba4 str. 657]
 gi|295317741|gb|ADF98118.1| cold shock protein [Clostridium botulinum F str. 230613]
 gi|322804547|emb|CBZ02098.1| cold shock protein CspG [Clostridium botulinum H04402 065]
          Length = 65

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT     E G+DVF H S + S G  +L EGQ V+YD V+     
Sbjct: 2  NGTVKWFNGEKGFGFIT----GEDGNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKG- 56

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 57 -PQAENITII 65


>gi|13472380|ref|NP_103947.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|260467122|ref|ZP_05813301.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
 gi|14023126|dbj|BAB49733.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
 gi|259029134|gb|EEW30431.1| cold-shock DNA-binding domain protein [Mesorhizobium
          opportunistum WSM2075]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N  KG+GFITP+   +   DVF+H SAV ++GL  L +GQ VT+D   + 
Sbjct: 1  MPQTGTVKFFNHAKGFGFITPD---DGAKDVFVHISAVQASGLPGLEDGQKVTFDTEPDK 57

Query: 61 ANGKYSAENLKL 72
                A NL +
Sbjct: 58 RGKGPKAVNLSV 69


>gi|319760574|ref|YP_004124512.1| cold shock-like protein cspC [Candidatus Blochmannia vafer str.
          BVAF]
 gi|318039288|gb|ADV33838.1| cold shock-like protein cspC [Candidatus Blochmannia vafer str.
          BVAF]
          Length = 69

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP   ++   DVF+H SA+   G   L+EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---SDGSKDVFVHFSAIQGNGFKTLSEGQNVEFEI-QDGHKG 60

Query: 64 KYSAENLKLV 73
            SA N+  +
Sbjct: 61 P-SAVNVTTI 69


>gi|269103590|ref|ZP_06156287.1| cold shock protein [Photobacterium damselae subsp. damselae CIP
          102761]
 gi|268163488|gb|EEZ41984.1| cold shock protein [Photobacterium damselae subsp. damselae CIP
          102761]
          Length = 68

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI+       G DVF+H SA+ S G   L EGQ V +  V +   G
Sbjct: 5  TGTVKWFNDEKGFGFIS----GVDGKDVFVHYSAIQSQGRRTLREGQSVEF-IVTDGQKG 59

Query: 64 KYSAENLKL 72
            ++E + L
Sbjct: 60 PQASEVVAL 68


>gi|160938586|ref|ZP_02085938.1| hypothetical protein CLOBOL_03481 [Clostridium bolteae ATCC
          BAA-613]
 gi|158438285|gb|EDP16044.1| hypothetical protein CLOBOL_03481 [Clostridium bolteae ATCC
          BAA-613]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KG+GFIT E   E+G+D+F+H S +A+ G  +L +GQ VT+D    + 
Sbjct: 1  MNKGTVKWFNSQKGFGFITNE---ENGEDIFVHFSGIATDGFKSLEDGQSVTFDITNGNR 57

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 58 G--LQAVNV 64


>gi|167032005|ref|YP_001667236.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida GB-1]
 gi|166858493|gb|ABY96900.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KGYGFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQNGTVKWFNDEKGYGFITPE----SGADLFVHFRAIEGNGFKSLKEGQKVTFVAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ +++V
Sbjct: 60 G--LQADQVQVV 69


>gi|27366937|ref|NP_762464.1| cold shock protein [Vibrio vulnificus CMCP6]
 gi|37676712|ref|NP_937108.1| cold shock protein [Vibrio vulnificus YJ016]
 gi|320158815|ref|YP_004191193.1| cold shock protein CspG [Vibrio vulnificus MO6-24/O]
 gi|27358504|gb|AAO07454.1|AE016809_216 Cold shock protein [Vibrio vulnificus CMCP6]
 gi|37201255|dbj|BAC97078.1| cold shock protein [Vibrio vulnificus YJ016]
 gi|319934127|gb|ADV88990.1| cold shock protein CspG [Vibrio vulnificus MO6-24/O]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI+ +     G+DVF+H +++ S G   L EGQ VT++  Q    G
Sbjct: 6  TGSVKWFNETKGFGFISQD---NGGNDVFVHFNSIVSTGFKTLAEGQRVTFEVEQG-KKG 61

Query: 64 KYSAENLKL 72
            +A    L
Sbjct: 62 PQAANVTAL 70


>gi|226943910|ref|YP_002798983.1| Cold-shock DNA-binding domain-containing protein [Azotobacter
          vinelandii DJ]
 gi|226718837|gb|ACO78008.1| Cold-shock DNA-binding domain-containing protein [Azotobacter
          vinelandii DJ]
          Length = 69

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  ++ S+G  +L EGQ V++  V+   
Sbjct: 4  RQTGTVKWFNDEKGFGFITPE----SGPDLFVHYRSIQSSGFKSLQEGQRVSFVAVKGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ +++V
Sbjct: 60 G--MQADEVQVV 69


>gi|332798799|ref|YP_004460298.1| cold-shock DNA-binding domain-containing protein
          [Tepidanaerobacter sp. Re1]
 gi|332696534|gb|AEE90991.1| cold-shock DNA-binding domain protein [Tepidanaerobacter sp. Re1]
          Length = 66

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI  EG      DVF+H SA+   G   L EG  V +D V+     
Sbjct: 2  QGKVKWFNQEKGYGFIEVEGD----KDVFVHYSAIQQEGFKTLKEGDSVEFDVVEGQKG- 56

Query: 64 KYSAENLKLV 73
             AEN+ LV
Sbjct: 57 -PQAENVTLV 65


>gi|315221882|ref|ZP_07863794.1| cold-shock DNA-binding domain protein [Streptococcus anginosus
          F0211]
 gi|315189115|gb|EFU22818.1| cold-shock DNA-binding domain protein [Streptococcus anginosus
          F0211]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ E    +G DVF H SA+ S G  +L EG  V ++  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFISQE----NGPDVFAHFSAIQSDGFKSLNEGDKVMFNIEKGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--LQAVNITTL 66


>gi|290476552|ref|YP_003469457.1| low-temperature-responsive gene, nucleic acid-binding domain
          [Xenorhabdus bovienii SS-2004]
 gi|289175890|emb|CBJ82693.1| low-temperature-responsive gene, nucleic acid-binding domain
          [Xenorhabdus bovienii SS-2004]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+PE   +   DVF+H SA+       L EGQ V +   ++ A G
Sbjct: 6  TGLVKWFDAGKGFGFISPE---DGSKDVFVHFSAIQGNDFKTLDEGQKVEFSI-ESGAKG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PSAANVIAL 70


>gi|312200423|ref|YP_004020484.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
 gi|311231759|gb|ADP84614.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ +G    G DVF+H SA+ + G  +L EGQ V ++ VQ   
Sbjct: 1  MAQGAVKWFNAEKGFGFISVDG---GGPDVFVHFSAIVADGYKSLDEGQTVQFEIVQGQK 57

Query: 62 NGK 64
            +
Sbjct: 58 GPQ 60


>gi|224369509|ref|YP_002603673.1| CspA [Desulfobacterium autotrophicum HRM2]
 gi|223692226|gb|ACN15509.1| CspA [Desulfobacterium autotrophicum HRM2]
          Length = 66

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E    +G+DVF+H S + ++G  +L EG  VT+D  Q   
Sbjct: 1  MANGTVKWFNDSKGFGFIEQE----NGEDVFVHHSGINASGFKSLNEGDKVTFDIEQGQK 56

Query: 62 NGKYSAENLKLV 73
              +A N+ +V
Sbjct: 57 G--PAATNVTVV 66


>gi|27365451|ref|NP_760979.1| cold shock domain-containing protein CspD [Vibrio vulnificus
          CMCP6]
 gi|37680508|ref|NP_935117.1| cold shock-like protein CspD [Vibrio vulnificus YJ016]
 gi|27361599|gb|AAO10506.1| cold shock domain protein CspD [Vibrio vulnificus CMCP6]
 gi|37199256|dbj|BAC95088.1| cold shock-like protein CspD [Vibrio vulnificus YJ016]
          Length = 76

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +       D+F H S +   G   L  GQ VTY+  +   
Sbjct: 4  MATGTVKWFNNAKGFGFICSDQEE---GDIFAHYSTIQMDGYRTLKAGQQVTYEI-EKGP 59

Query: 62 NGKYSAENLKLVPKSSN 78
           G +++  + L  +++ 
Sbjct: 60 KGCHASSVVPLEVQATK 76


>gi|27366046|ref|NP_761574.1| Cold shock protein [Vibrio vulnificus CMCP6]
 gi|37679688|ref|NP_934297.1| cold shock protein [Vibrio vulnificus YJ016]
 gi|320156560|ref|YP_004188939.1| cold shock protein CspA [Vibrio vulnificus MO6-24/O]
 gi|27362246|gb|AAO11101.1| Cold shock protein [Vibrio vulnificus CMCP6]
 gi|37198433|dbj|BAC94268.1| cold shock protein [Vibrio vulnificus YJ016]
 gi|319931872|gb|ADV86736.1| cold shock protein CspA [Vibrio vulnificus MO6-24/O]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI+ +     G DVF+H  A+ S G   L EGQ V+++  +     
Sbjct: 6  TGTVKWFNETKGFGFISQD---NGGKDVFVHFRAIVSEGFKTLAEGQKVSFNVEEGQKG- 61

Query: 64 KYSAENLKLV 73
             A N+ ++
Sbjct: 62 -PQASNVTVI 70


>gi|226355888|ref|YP_002785628.1| cold-shock DNA-binding domain-containing protein [Deinococcus
          deserti VCD115]
 gi|226317878|gb|ACO45874.1| putative Cold-shock DNA-binding domain protein [Deinococcus
          deserti VCD115]
          Length = 94

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI          DVF+H SA+ S G   L EG  V ++      
Sbjct: 1  MAQGRVKWFNVEKGYGFIE----HPGNPDVFVHYSAIQSGGFRKLNEGDEVEFEVESGQG 56

Query: 62 NGKYSAENLKL 72
          N    A+N+ +
Sbjct: 57 NKGPQAKNVVV 67


>gi|17548223|ref|NP_521563.1| cold shock-like transcription regulator protein [Ralstonia
          solanacearum GMI1000]
 gi|300693045|ref|YP_003749018.1| cold shock DNA binding protein (transcription regulator)
          [Ralstonia solanacearum PSI07]
 gi|17430469|emb|CAD17153.1| probable cold shock-like transcription regulator protein
          [Ralstonia solanacearum GMI1000]
 gi|299068439|emb|CBJ39662.1| Cold shock DNA binding protein (transcription regulator)
          [Ralstonia solanacearum CMR15]
 gi|299075082|emb|CBJ34363.1| Cold shock DNA binding protein (transcription regulator)
          [Ralstonia solanacearum PSI07]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+G    G D+F H S +  +G   L +GQ V+++  Q   
Sbjct: 1  MATGTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|330502376|ref|YP_004379245.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina NK-01]
 gi|328916662|gb|AEB57493.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina NK-01]
          Length = 69

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KGYGFITP    +SGDD+F+H  A+ S G   L EGQ V++   +   
Sbjct: 4  RQTGTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQSDGFKTLKEGQQVSFVATRGQK 59

Query: 62 NGKYSAENLKLV 73
               AE ++++
Sbjct: 60 G--MQAEEVQVI 69


>gi|312897558|ref|ZP_07756978.1| major cold shock protein CspA [Megasphaera micronuciformis F0359]
 gi|310621410|gb|EFQ04950.1| major cold shock protein CspA [Megasphaera micronuciformis F0359]
          Length = 65

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++ +KGYGFI  E     G DVF+H SA+   G  +LTEGQ V +D V + A G
Sbjct: 2  QGKVKWFSAEKGYGFIERE----DGGDVFVHFSAIQEDGFKSLTEGQEVEFDIV-DGARG 56

Query: 64 KYSAENLK 71
            +A   K
Sbjct: 57 PQAANVTK 64


>gi|308274214|emb|CBX30813.1| Major cold shock protein [uncultured Desulfobacterium sp.]
          Length = 66

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E    +G DVF+H SA+ + G  +L EG  V+++  Q + 
Sbjct: 1  MVDGTVKWFNDKKGFGFIEQE----NGPDVFVHHSAINATGFKSLREGDKVSFEIEQGNK 56

Query: 62 NGKYSAENLKL 72
              SA N+ +
Sbjct: 57 G--PSAVNVTV 65


>gi|261211013|ref|ZP_05925303.1| cold shock protein CspA [Vibrio sp. RC341]
 gi|260839988|gb|EEX66588.1| cold shock protein CspA [Vibrio sp. RC341]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP+     G D+F+H  ++ S G   L EGQ V ++  Q +   
Sbjct: 6  TGLVKWFNETKGFGFITPD---NGGADLFVHFKSIVSDGFKTLAEGQKVAFNVEQGNKG- 61

Query: 64 KYSAENLKLV 73
             A N+ L+
Sbjct: 62 -PQAANVTLL 70


>gi|322421190|ref|YP_004200413.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
          M18]
 gi|320127577|gb|ADW15137.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
          Length = 66

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  E    +G DVF+H S++   G  +L EG  VT++ VQ  A
Sbjct: 1  MANGVVKWFNDAKGFGFIEQE----NGGDVFVHFSSIQGDGFKSLAEGDSVTFEVVQG-A 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 KGPQAANVVK 65


>gi|254241055|ref|ZP_04934377.1| cold-shock protein CspD [Pseudomonas aeruginosa 2192]
 gi|126194433|gb|EAZ58496.1| cold-shock protein CspD [Pseudomonas aeruginosa 2192]
          Length = 90

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  EG  E   D+F H SA+   G   L  GQ V ++ +Q   
Sbjct: 1  MLSGKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPK 57

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 58 G--LHAINI 64


>gi|15597818|ref|NP_251312.1| cold-shock protein CspD [Pseudomonas aeruginosa PAO1]
 gi|116050609|ref|YP_790572.1| cold-shock protein CspD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891217|ref|YP_002440083.1| cold-shock protein CspD [Pseudomonas aeruginosa LESB58]
 gi|254235608|ref|ZP_04928931.1| cold-shock protein CspD [Pseudomonas aeruginosa C3719]
 gi|296388918|ref|ZP_06878393.1| cold-shock protein CspD [Pseudomonas aeruginosa PAb1]
 gi|313107659|ref|ZP_07793842.1| cold-shock protein CspD [Pseudomonas aeruginosa 39016]
 gi|9948689|gb|AAG06010.1|AE004691_1 cold-shock protein CspD [Pseudomonas aeruginosa PAO1]
 gi|115585830|gb|ABJ11845.1| cold-shock protein CspD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167539|gb|EAZ53050.1| cold-shock protein CspD [Pseudomonas aeruginosa C3719]
 gi|218771442|emb|CAW27209.1| cold-shock protein CspD [Pseudomonas aeruginosa LESB58]
 gi|310880344|gb|EFQ38938.1| cold-shock protein CspD [Pseudomonas aeruginosa 39016]
          Length = 90

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  EG  E   D+F H SA+   G   L  GQ V ++ +Q   
Sbjct: 1  MLSGKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPK 57

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 58 G--LHAINI 64


>gi|319781907|ref|YP_004141383.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|317167795|gb|ADV11333.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N  KG+GFITP+   +   DVF+H SAV ++GL  L +GQ V++D   + 
Sbjct: 1  MPQTGTVKFFNHAKGFGFITPD---DGAKDVFVHISAVQASGLPGLEDGQKVSFDTEPDK 57

Query: 61 ANGKYSAENLKL 72
                A NL +
Sbjct: 58 RGKGPKAVNLSV 69


>gi|170761832|ref|YP_001785618.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169408821|gb|ACA57232.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 65

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFIT     E G+DVF H S + S G  +L EGQ V+YD V+     
Sbjct: 2  NGTVKWFNGDKGFGFIT----GEDGNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKG- 56

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 57 -PQAENITII 65


>gi|266620956|ref|ZP_06113891.1| cold shock protein B [Clostridium hathewayi DSM 13479]
 gi|288867377|gb|EFC99675.1| cold shock protein B [Clostridium hathewayi DSM 13479]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KGYGFIT +   E+G++VF+H S + + G  +L +GQ VT+D  Q + 
Sbjct: 1  MNKGTVKWFNSSKGYGFITND---ETGEEVFVHFSGIMTDGYKSLEDGQKVTFDTTQGNR 57

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 58 G--IQAVNV 64


>gi|254380611|ref|ZP_04995977.1| cold-shock domain containing protein [Streptomyces sp. Mg1]
 gi|194339522|gb|EDX20488.1| cold-shock domain containing protein [Streptomyces sp. Mg1]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D  Q   
Sbjct: 1  MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELNEGQKVTFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|59712374|ref|YP_205150.1| DNA replication inhibitor [Vibrio fischeri ES114]
 gi|197334669|ref|YP_002156589.1| cold shock domain protein CspD [Vibrio fischeri MJ11]
 gi|59480475|gb|AAW86262.1| DNA replication inhibitor [Vibrio fischeri ES114]
 gi|197316159|gb|ACH65606.1| cold shock domain protein CspD [Vibrio fischeri MJ11]
          Length = 73

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      D+F H S +   G   L  GQ VTY+  +   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIEMEGYRTLKAGQAVTYEIHEGPK 57

Query: 62 NGKYSAENLKLVPKS 76
             + A  +KL+   
Sbjct: 58 G--FHASEIKLLEGE 70


>gi|294470718|gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]
          Length = 263

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G + W+N  KGYGFITP+   + G+++F+H+SA+ S G  +LT G  V +   Q   +G
Sbjct: 12 TGKVNWFNDSKGYGFITPD---DDGEELFVHQSAILSEGFRSLTVGDSVEFAVTQGT-DG 67

Query: 64 KYSAENLK 71
          K  A N+ 
Sbjct: 68 KTKAVNVT 75


>gi|212712025|ref|ZP_03320153.1| hypothetical protein PROVALCAL_03101 [Providencia alcalifaciens
          DSM 30120]
 gi|212685547|gb|EEB45075.1| hypothetical protein PROVALCAL_03101 [Providencia alcalifaciens
          DSM 30120]
          Length = 66

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI+P    +   DVF+H SA+ S     L EGQ V++  V+N A G
Sbjct: 2  TGLVKWFNESKGFGFISP---ADGSKDVFVHFSAIQSDSFKTLNEGQKVSFS-VENGAKG 57

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 58 PAAVNVVAL 66


>gi|197301371|ref|ZP_03166452.1| hypothetical protein RUMLAC_00098 [Ruminococcus lactaris ATCC
          29176]
 gi|197299528|gb|EDY34047.1| hypothetical protein RUMLAC_00098 [Ruminococcus lactaris ATCC
          29176]
          Length = 65

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFI+       G+D+F+H S +   G  +L EGQ V +D  +  A G
Sbjct: 2  TGTVKWFNNQKGYGFIS----DSEGNDIFVHYSGLVMDGFKSLEEGQAVEFDVTEG-AKG 56

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 57 PQATNVVKL 65


>gi|86146448|ref|ZP_01064771.1| cold shock-like protein CspD [Vibrio sp. MED222]
 gi|85835711|gb|EAQ53846.1| cold shock-like protein CspD [Vibrio sp. MED222]
          Length = 73

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      D+F H S +   G   L  GQ V Y+ V++  
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMEGYRTLKAGQQVDYE-VESGP 56

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 57 KGSHASSVVPV 67


>gi|290968845|ref|ZP_06560382.1| cold-shock DNA-binding domain protein [Megasphaera genomosp.
          type_1 str. 28L]
 gi|290781141|gb|EFD93732.1| cold-shock DNA-binding domain protein [Megasphaera genomosp.
          type_1 str. 28L]
          Length = 65

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ +KGYGFI  +     G DVF+H SA+   G  +L EGQ V +D VQ  A G 
Sbjct: 3  GKVKWFSAEKGYGFIEKD----GGGDVFVHFSAIQEDGFKSLAEGQEVEFD-VQEGARGP 57

Query: 65 YSAENLK 71
           +A  +K
Sbjct: 58 QAANVVK 64


>gi|225387921|ref|ZP_03757685.1| hypothetical protein CLOSTASPAR_01691 [Clostridium asparagiforme
          DSM 15981]
 gi|225045964|gb|EEG56210.1| hypothetical protein CLOSTASPAR_01691 [Clostridium asparagiforme
          DSM 15981]
          Length = 86

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KG+GFIT   ++E+G+D+F+H S +AS G  +L +GQ VT+D    + 
Sbjct: 20 MNKGTVKWFNSQKGFGFIT---NSENGEDIFVHYSGIASNGFKSLEDGQSVTFDITNGNR 76

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 77 G--LQAVNV 83


>gi|320355243|ref|YP_004196582.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
          DSM 2032]
 gi|320123745|gb|ADW19291.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus
          DSM 2032]
          Length = 66

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +     G DVF+H SA+   G  +L EG+ V ++ V    
Sbjct: 1  MAEGTVKWFNDSKGFGFIQQD----GGKDVFVHYSAIQGQGFKSLKEGERVKFEVVSGAK 56

Query: 62 NGKYSAENLKLV 73
              +AEN+  +
Sbjct: 57 G--PAAENVTKL 66


>gi|148977558|ref|ZP_01814137.1| cold shock-like protein CspD [Vibrionales bacterium SWAT-3]
 gi|145963209|gb|EDK28476.1| cold shock-like protein CspD [Vibrionales bacterium SWAT-3]
          Length = 73

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      D+F H S +   G   L  GQ V Y+ V++  
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGEE---GDIFAHYSTIQMEGYRTLKAGQQVDYE-VESGP 56

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 57 KGSHASSVVPV 67


>gi|28897786|ref|NP_797391.1| cold shock-like protein CspD [Vibrio parahaemolyticus RIMD
          2210633]
 gi|28805999|dbj|BAC59275.1| cold shock-like protein CspD [Vibrio parahaemolyticus RIMD
          2210633]
          Length = 79

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +   E   D+F H S +   G   L  GQ V+Y+  +   
Sbjct: 8  MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYEI-EKGP 63

Query: 62 NGKYSAENLKLVPKS 76
           G +++  + +  ++
Sbjct: 64 KGCHASSVVPIEAQA 78


>gi|120599254|ref|YP_963828.1| cold-shock DNA-binding domain-containing protein [Shewanella sp.
          W3-18-1]
 gi|146292672|ref|YP_001183096.1| cold-shock DNA-binding domain-containing protein [Shewanella
          putrefaciens CN-32]
 gi|120559347|gb|ABM25274.1| cold-shock DNA-binding protein family [Shewanella sp. W3-18-1]
 gi|145564362|gb|ABP75297.1| cold-shock DNA-binding protein family [Shewanella putrefaciens
          CN-32]
 gi|319425976|gb|ADV54050.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens
          200]
          Length = 69

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI  E    SG DVF+H  A+ S G   L EGQ V++   Q     
Sbjct: 5  TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 60 -PQAENVTII 68


>gi|295798071|emb|CAX68890.1| Cold-shock protein DNA-binding domain [uncultured bacterium]
          Length = 73

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KGYGF+ P+G  E G DVF+H SA+   G   LT GQ V ++ V    
Sbjct: 6  LTKGKVKWFNNQKGYGFVNPDG--EEGRDVFVHYSAIQGDGYKTLTTGQDVEFELV-TGP 62

Query: 62 NGKYSAENLKL 72
           G  +   +K+
Sbjct: 63 KGDMAQNVVKI 73


>gi|86358177|ref|YP_470069.1| cold shock protein [Rhizobium etli CFN 42]
 gi|86282279|gb|ABC91342.1| cold shock protein [Rhizobium etli CFN 42]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++K++N DKG+GFITP+G      DVF+H SA+ ++G+ +L EGQ VT+D   + 
Sbjct: 1  MATKGTVKFFNQDKGFGFITPDG---GAKDVFVHISALQASGIQSLREGQQVTFDTEPDR 57

Query: 61 ANGKYSAENLK 71
                A N+ 
Sbjct: 58 MGKGPKAVNIS 68


>gi|21223064|ref|NP_628843.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|256785836|ref|ZP_05524267.1| cold shock protein [Streptomyces lividans TK24]
 gi|289769728|ref|ZP_06529106.1| cold shock protein [Streptomyces lividans TK24]
 gi|7321274|emb|CAB82052.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|289699927|gb|EFD67356.1| cold shock protein [Streptomyces lividans TK24]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQK 57

Query: 62 NGKYSAENLKL 72
              +AEN+ L
Sbjct: 58 G--PTAENIVL 66


>gi|197117042|ref|YP_002137469.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|197086402|gb|ACH37673.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
          Length = 66

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  +    +G DVF+H S++   G  +L EG  VT+D VQ  A
Sbjct: 1  MANGVVKWFNDAKGFGFIEQD----NGVDVFVHFSSIQGDGFKSLVEGDSVTFDVVQG-A 55

Query: 62 NGKYSAENLK 71
           G  +A  +K
Sbjct: 56 KGPQAANVVK 65


>gi|167034611|ref|YP_001669842.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida GB-1]
 gi|166861099|gb|ABY99506.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
          Length = 84

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G TE   D+F H SA+   G   L  GQ VT++ +Q   
Sbjct: 1  MASGKVKWFNNAKGYGFINEDGGTE---DLFAHYSAIQMDGYKTLKAGQAVTFNIIQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|116671146|ref|YP_832079.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
          FB24]
 gi|220913078|ref|YP_002488387.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|116611255|gb|ABK03979.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
 gi|219859956|gb|ACL40298.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFITP+ S     DVF+H S + + G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFITPDDSD---GDVFVHYSEIQTGGFKTLDENQRVQFEIGQGAK 57

Query: 62 NGKYSAENLKLV 73
               A  + LV
Sbjct: 58 G--PQATGVTLV 67


>gi|168022724|ref|XP_001763889.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684894|gb|EDQ71293.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 198

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFITP+   + GDD+F+H++++ + G  +L EG++V +  V++  +
Sbjct: 14 ETGKVKWFNSSKGFGFITPD---KGGDDLFVHQTSIHAEGFRSLREGEVVEFQ-VESSED 69

Query: 63 GKYSAENLK 71
          G+  A  + 
Sbjct: 70 GRTKALAVT 78


>gi|163751591|ref|ZP_02158812.1| cold shock domain family protein [Shewanella benthica KT99]
 gi|294141301|ref|YP_003557279.1| cold shock domain family protein [Shewanella violacea DSS12]
 gi|161328503|gb|EDP99657.1| cold shock domain family protein [Shewanella benthica KT99]
 gi|293327770|dbj|BAJ02501.1| cold shock domain family protein [Shewanella violacea DSS12]
          Length = 68

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI  E    SG DVF+H  A+ S G   L EGQ V +   Q     
Sbjct: 5  TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAIQSDGFKTLDEGQKVQFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+ +V
Sbjct: 60 -PQAENVTIV 68


>gi|145300857|ref|YP_001143698.1| major cold shock protein [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|330828121|ref|YP_004391073.1| Cold shock-like protein cspI [Aeromonas veronii B565]
 gi|142853629|gb|ABO91950.1| major cold shock protein [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|328803257|gb|AEB48456.1| Cold shock-like protein cspI [Aeromonas veronii B565]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N +KG+GFI+P    +   DVF+H SA+ S     L EGQ V +   Q    G
Sbjct: 6  TGTVKFFNAEKGFGFISP---ADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 PAAANVVGL 70


>gi|310778967|ref|YP_003967300.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
 gi|309748290|gb|ADO82952.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFIT    +E G+D+F+H S +   G   L EG+ VT+D V+   
Sbjct: 1  MLKGTVKWFNSEKGFGFIT----SEEGNDLFVHFSEINKPGFKTLEEGEEVTFDVVEGQ- 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 KGPQAANV 63


>gi|237747860|ref|ZP_04578340.1| cold-shock DNA-binding protein family protein [Oxalobacter
          formigenes OXCC13]
 gi|229379222|gb|EEO29313.1| cold-shock DNA-binding protein family protein [Oxalobacter
          formigenes OXCC13]
          Length = 78

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+    +G D+F H S + + G  +L EGQ V ++      
Sbjct: 12 METGTVKWFNNSKGFGFITPD---NNGADLFAHFSEIQAGGFKSLEEGQKVKFESGVGQK 68

Query: 62 NGKYSAENLKLV 73
               A+N++ +
Sbjct: 69 G--PQAKNIQPM 78


>gi|239627019|ref|ZP_04670050.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          bacterium 1_7_47_FAA]
 gi|239517165|gb|EEQ57031.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          bacterium 1_7_47FAA]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KG+GFIT   + E+G+D+F+H S +A+ G  +L +GQ VT+D    + 
Sbjct: 1  MNKGTVKWFNSQKGFGFIT---NAENGEDIFVHFSGIATDGFKSLDDGQSVTFDITNGNR 57

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 58 G--LQAVNV 64


>gi|197119555|ref|YP_002139982.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|253699707|ref|YP_003020896.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
 gi|197088915|gb|ACH40186.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|251774557|gb|ACT17138.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
          Length = 66

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +    +GDDVF+H SA+   G  +L EG  VT+D V+   
Sbjct: 1  MANGTVKWFNDSKGFGFIEQD----NGDDVFVHFSAITGDGFKSLAEGDSVTFDVVKG-P 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 KGLQAANV 63


>gi|307730691|ref|YP_003907915.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1003]
 gi|323527027|ref|YP_004229180.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          sp. CCGE1001]
 gi|307585226|gb|ADN58624.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003]
 gi|323384029|gb|ADX56120.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S + + G  +L E Q V++D V+   
Sbjct: 1  METGIVKWFNDAKGFGFITSDS---GGEDLFAHFSEIRTEGFKSLKENQRVSFD-VKAGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|307823940|ref|ZP_07654168.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307735234|gb|EFO06083.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 68

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
          +  G++KW+N  KG+GFI+P   ++   DVF+H SA+AS  G   L EGQ V YD V++ 
Sbjct: 1  MATGTVKWFNEAKGFGFISP---SDGSADVFVHFSAIASDGGYRTLAEGQAVKYD-VESG 56

Query: 61 ANGKYSAEN 69
            G  +++ 
Sbjct: 57 PKGPQASQV 65


>gi|84516461|ref|ZP_01003820.1| cold shock family protein [Loktanella vestfoldensis SKA53]
 gi|84509497|gb|EAQ05955.1| cold shock family protein [Loktanella vestfoldensis SKA53]
          Length = 69

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G+D+F+H SAV  +G+  L + Q +T+D V+   
Sbjct: 1  MPSGTVKWFNTTKGFGFIAPD---DGGNDIFVHISAVEQSGMTGLADNQKITFDLVEG-R 56

Query: 62 NGKYSAENL 70
          +G+  A NL
Sbjct: 57 DGRKMAGNL 65


>gi|312795412|ref|YP_004028334.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
 gi|312167187|emb|CBW74190.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFIT +     G+D+F H S + + G  +L E Q V+++ V+N  
Sbjct: 1  METGIVKWFNDAKGYGFITADS---GGEDLFAHFSEIRAEGFKSLKESQRVSFE-VKNGX 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|312883132|ref|ZP_07742863.1| cold shock protein CspE [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369292|gb|EFP96813.1| cold shock protein CspE [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 69

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H SA+   G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAITGDGFRTLVEGQKVEFVVSQGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+K+V
Sbjct: 61 -PQAENIKVV 69


>gi|293606147|ref|ZP_06688512.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
          43553]
 gi|311107159|ref|YP_003980012.1| cold-shock DNA-binding domain-containing protein 3 [Achromobacter
          xylosoxidans A8]
 gi|292815602|gb|EFF74718.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
          43553]
 gi|310761848|gb|ADP17297.1| cold-shock DNA-binding domain protein 3 [Achromobacter
          xylosoxidans A8]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFITPE     G D+F H S +  +G  +L E Q V++    N  
Sbjct: 1  METGVVKWFNSEKGYGFITPEA---GGKDLFAHFSEIQGSGFKSLEENQRVSF-VTANGP 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPQA 61


>gi|254818580|ref|ZP_05223581.1| cold-shock DNA-binding protein family protein [Mycobacterium
          intracellulare ATCC 13950]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P+   +   DVF+H S +   G  +L E Q V ++  Q  A
Sbjct: 1  MTQGTVKWFNGEKGFGFIAPD---DGSADVFVHYSEIQGGGYRSLEENQRVQFEVGQG-A 56

Query: 62 NGKYSAENLKL 72
           G  +     +
Sbjct: 57 KGPQATGVTAV 67


>gi|238916449|ref|YP_002929966.1| cold shock protein (beta-ribbon, CspA family) [Eubacterium
          eligens ATCC 27750]
 gi|238871809|gb|ACR71519.1| cold shock protein (beta-ribbon, CspA family) [Eubacterium
          eligens ATCC 27750]
          Length = 84

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI    S ESG DVF+H S +   G  +L EG  V +D  +  A G
Sbjct: 21 KGTVKWFNNQKGYGFI----SDESGKDVFVHYSGLNMEGFKSLEEGAQVEFDVTEG-AKG 75

Query: 64 KYSAENLKL 72
            +    KL
Sbjct: 76 PQATNVTKL 84


>gi|302538395|ref|ZP_07290737.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302447290|gb|EFL19106.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATQGYRELQEGQKVNFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|149190926|ref|ZP_01869189.1| putative Cold shock-like protein [Vibrio shilonii AK1]
 gi|148835281|gb|EDL52255.1| putative Cold shock-like protein [Vibrio shilonii AK1]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GF+  E     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 6  NGTVKWFNEEKGFGFLAQE---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 LQAANVVAL 70


>gi|116252711|ref|YP_768549.1| cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841]
 gi|190892268|ref|YP_001978810.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|209549797|ref|YP_002281714.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|218463687|ref|ZP_03503778.1| cold-shock DNA-binding domain protein [Rhizobium etli Kim 5]
 gi|218510076|ref|ZP_03507954.1| cold-shock DNA-binding domain protein [Rhizobium etli Brasil 5]
 gi|218660216|ref|ZP_03516146.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771]
 gi|218674774|ref|ZP_03524443.1| cold-shock DNA-binding domain protein [Rhizobium etli GR56]
 gi|241205217|ref|YP_002976313.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|115257359|emb|CAK08454.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|190697547|gb|ACE91632.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|209535553|gb|ACI55488.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|240859107|gb|ACS56774.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|327192667|gb|EGE59605.1| cold shock protein CspA [Rhizobium etli CNPAF512]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++K++N DKG+GFITP+G      DVF+H SA+ ++G+ +L EGQ VT+D   + 
Sbjct: 1  MATKGTVKFFNQDKGFGFITPDG---GAKDVFVHISALQASGIQSLREGQQVTFDTEPDR 57

Query: 61 ANGKYSAENLK 71
                A N+ 
Sbjct: 58 MGKGPKAVNIS 68


>gi|47567592|ref|ZP_00238303.1| hypothetical protein BCE_G9241_1119 [Bacillus cereus G9241]
 gi|52144195|ref|YP_082633.1| cold shock protein [Bacillus cereus E33L]
 gi|206968178|ref|ZP_03229134.1| cold shock protein CspA [Bacillus cereus AH1134]
 gi|206976513|ref|ZP_03237419.1| cold shock protein CspA [Bacillus cereus H3081.97]
 gi|217958711|ref|YP_002337259.1| cold shock protein CspA [Bacillus cereus AH187]
 gi|218235518|ref|YP_002365918.1| cold shock protein CspA [Bacillus cereus B4264]
 gi|218896171|ref|YP_002444582.1| cold shock protein CspA [Bacillus cereus G9842]
 gi|222094856|ref|YP_002528916.1| cold shock protein [Bacillus cereus Q1]
 gi|225863086|ref|YP_002748464.1| cold shock protein CspA [Bacillus cereus 03BB102]
 gi|228899812|ref|ZP_04064058.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222]
 gi|228951597|ref|ZP_04113701.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228964179|ref|ZP_04125302.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|229068787|ref|ZP_04202083.1| Cold shock-like protein cspB [Bacillus cereus F65185]
 gi|229078421|ref|ZP_04210982.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2]
 gi|229108691|ref|ZP_04238301.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15]
 gi|229137920|ref|ZP_04266519.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26]
 gi|229154797|ref|ZP_04282912.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342]
 gi|229177647|ref|ZP_04305024.1| Cold shock-like protein cspB [Bacillus cereus 172560W]
 gi|229189322|ref|ZP_04316342.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876]
 gi|47555787|gb|EAL14127.1| unknown [Bacillus cereus G9241]
 gi|51977664|gb|AAU19214.1| cold shock protein [Bacillus cereus E33L]
 gi|206737098|gb|EDZ54245.1| cold shock protein CspA [Bacillus cereus AH1134]
 gi|206745196|gb|EDZ56597.1| cold shock protein CspA [Bacillus cereus H3081.97]
 gi|209972080|gb|ACJ03551.1| cold shock protein [Bacillus thuringiensis serovar kurstaki]
 gi|209972086|gb|ACJ03554.1| cold shock protein [Bacillus thuringiensis serovar israelensis]
 gi|209972090|gb|ACJ03556.1| cold shock protein [Bacillus thuringiensis serovar alesti]
 gi|209972094|gb|ACJ03558.1| cold shock protein [Bacillus mycoides]
 gi|210077341|gb|ACJ06957.1| cold shock protein [Bacillus thuringiensis serovar asturiensis]
 gi|217067961|gb|ACJ82211.1| cold shock protein CspA [Bacillus cereus AH187]
 gi|218163475|gb|ACK63467.1| cold shock protein CspA [Bacillus cereus B4264]
 gi|218545113|gb|ACK97507.1| cold shock protein CspA [Bacillus cereus G9842]
 gi|221238914|gb|ACM11624.1| cold shock protein [Bacillus cereus Q1]
 gi|225786180|gb|ACO26397.1| cold shock protein CspA [Bacillus cereus 03BB102]
 gi|228594116|gb|EEK51915.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876]
 gi|228605837|gb|EEK63281.1| Cold shock-like protein cspB [Bacillus cereus 172560W]
 gi|228628745|gb|EEK85457.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342]
 gi|228645577|gb|EEL01810.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26]
 gi|228674721|gb|EEL29955.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15]
 gi|228704843|gb|EEL57268.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2]
 gi|228714295|gb|EEL66174.1| Cold shock-like protein cspB [Bacillus cereus F65185]
 gi|228795529|gb|EEM43013.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228808058|gb|EEM54573.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228859831|gb|EEN04245.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++  ++ 
Sbjct: 1  MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFEI-EDG 55

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 56 NRGPQAKNVIKL 67


>gi|328880109|emb|CCA53348.1| cold shock protein [Streptomyces venezuelae ATCC 10712]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +   G   LTEG+ VT+D  Q   
Sbjct: 1  MASGTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNIQGNGYRELTEGEAVTFDITQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|313898450|ref|ZP_07831987.1| 7.4 kDa cold shock protein [Clostridium sp. HGF2]
 gi|312956832|gb|EFR38463.1| 7.4 kDa cold shock protein [Clostridium sp. HGF2]
          Length = 66

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N DKGYGFIT    T++G D+F+H S + ++G   L EG  V ++   ND 
Sbjct: 1  MSTGKVKWFNADKGYGFIT----TDAGQDLFVHYSEIQTSGFRTLEEGAKVNFEINTNDR 56

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 57 G--DHAANVTVI 66


>gi|241889467|ref|ZP_04776767.1| putative cold shock protein [Gemella haemolysans ATCC 10379]
 gi|329768516|ref|ZP_08260004.1| cold shock protein cspA [Gemella haemolysans M341]
 gi|241863863|gb|EER68245.1| putative cold shock protein [Gemella haemolysans ATCC 10379]
 gi|328836666|gb|EGF86323.1| cold shock protein cspA [Gemella haemolysans M341]
          Length = 66

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI   G      D+F+H S++   G   L EG  V ++ V++ A
Sbjct: 1  MKQGTVKWFNEEKGFGFIEVAGE----KDIFVHFSSIKKDGFKTLKEGDKVEFE-VEDGA 55

Query: 62 NGKYSAENLKL 72
           G  +A  + L
Sbjct: 56 RGPQAANVVVL 66


>gi|89073823|ref|ZP_01160330.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|89050358|gb|EAR55859.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
          Length = 70

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GF+T +     G DVF+H  A+AS G   LTEGQ V++D  Q    G 
Sbjct: 7  GLVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQGQ-KGL 62

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 63 QAANVIAL 70


>gi|30019286|ref|NP_830917.1| cold shock protein [Bacillus cereus ATCC 14579]
 gi|30261242|ref|NP_843619.1| cold shock protein CspA [Bacillus anthracis str. Ames]
 gi|47526404|ref|YP_017753.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184074|ref|YP_027326.1| cold shock protein CspA [Bacillus anthracis str. Sterne]
 gi|49479225|ref|YP_035367.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|65318514|ref|ZP_00391473.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012]
 gi|118476719|ref|YP_893870.1| cold-shock DNA-binding protein family protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|167635405|ref|ZP_02393719.1| cold shock protein CspA [Bacillus anthracis str. A0442]
 gi|167640251|ref|ZP_02398517.1| cold shock protein CspA [Bacillus anthracis str. A0193]
 gi|170688025|ref|ZP_02879237.1| cold shock protein CspA [Bacillus anthracis str. A0465]
 gi|170707660|ref|ZP_02898112.1| cold shock protein CspA [Bacillus anthracis str. A0389]
 gi|190566579|ref|ZP_03019496.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I]
 gi|196036231|ref|ZP_03103630.1| cold shock protein CspA [Bacillus cereus W]
 gi|196037508|ref|ZP_03104819.1| cold shock protein CspA [Bacillus cereus NVH0597-99]
 gi|196044203|ref|ZP_03111439.1| cold shock protein CspA [Bacillus cereus 03BB108]
 gi|227816020|ref|YP_002816029.1| cold shock protein CspA [Bacillus anthracis str. CDC 684]
 gi|228913810|ref|ZP_04077435.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228926273|ref|ZP_04089347.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228932510|ref|ZP_04095391.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228944843|ref|ZP_04107206.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|229090176|ref|ZP_04221425.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42]
 gi|229120758|ref|ZP_04250001.1| Cold shock-like protein cspB [Bacillus cereus 95/8201]
 gi|229126542|ref|ZP_04255556.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4]
 gi|229183437|ref|ZP_04310662.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1]
 gi|229604794|ref|YP_002865665.1| cold shock protein CspA [Bacillus anthracis str. A0248]
 gi|254682697|ref|ZP_05146558.1| cold shock protein CspA [Bacillus anthracis str. CNEVA-9066]
 gi|254725490|ref|ZP_05187272.1| cold shock protein CspA [Bacillus anthracis str. A1055]
 gi|254734115|ref|ZP_05191828.1| cold shock protein CspA [Bacillus anthracis str. Western North
          America USA6153]
 gi|254740241|ref|ZP_05197933.1| cold shock protein CspA [Bacillus anthracis str. Kruger B]
 gi|254753581|ref|ZP_05205617.1| cold shock protein CspA [Bacillus anthracis str. Vollum]
 gi|254758678|ref|ZP_05210705.1| cold shock protein CspA [Bacillus anthracis str. Australia 94]
 gi|301052771|ref|YP_003790982.1| cold shock protein [Bacillus anthracis CI]
 gi|49035524|sp|Q81GQ6|CSPA_BACCR RecName: Full=Major cold shock protein CspA
 gi|49035527|sp|Q81TW8|CSPA_BACAN RecName: Full=Major cold shock protein CspA
 gi|29894829|gb|AAP08118.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gi|30254856|gb|AAP25105.1| cold shock protein CspA [Bacillus anthracis str. Ames]
 gi|47501552|gb|AAT30228.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178001|gb|AAT53377.1| cold shock protein CspA [Bacillus anthracis str. Sterne]
 gi|49330781|gb|AAT61427.1| cold shock protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|118415944|gb|ABK84363.1| cold-shock DNA-binding protein family [Bacillus thuringiensis
          str. Al Hakam]
 gi|167511852|gb|EDR87232.1| cold shock protein CspA [Bacillus anthracis str. A0193]
 gi|167529233|gb|EDR91986.1| cold shock protein CspA [Bacillus anthracis str. A0442]
 gi|170127435|gb|EDS96310.1| cold shock protein CspA [Bacillus anthracis str. A0389]
 gi|170667920|gb|EDT18671.1| cold shock protein CspA [Bacillus anthracis str. A0465]
 gi|190562131|gb|EDV16099.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I]
 gi|195991206|gb|EDX55175.1| cold shock protein CspA [Bacillus cereus W]
 gi|196024842|gb|EDX63513.1| cold shock protein CspA [Bacillus cereus 03BB108]
 gi|196031750|gb|EDX70346.1| cold shock protein CspA [Bacillus cereus NVH0597-99]
 gi|227005778|gb|ACP15521.1| cold shock protein CspA [Bacillus anthracis str. CDC 684]
 gi|228600021|gb|EEK57616.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1]
 gi|228656931|gb|EEL12755.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4]
 gi|228662763|gb|EEL18360.1| Cold shock-like protein cspB [Bacillus cereus 95/8201]
 gi|228693159|gb|EEL46871.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42]
 gi|228814871|gb|EEM61129.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228827200|gb|EEM72953.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228833370|gb|EEM78933.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228845749|gb|EEM90775.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229269202|gb|ACQ50839.1| cold shock protein CspA [Bacillus anthracis str. A0248]
 gi|300374940|gb|ADK03844.1| cold shock protein [Bacillus cereus biovar anthracis str. CI]
          Length = 67

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++  + +
Sbjct: 1  MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFEIEEGN 56

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 57 -RGPQAKNVIKL 67


>gi|319778247|ref|YP_004129160.1| cold-shock DNA-binding domain protein [Taylorella equigenitalis
          MCE9]
 gi|317108271|gb|ADU91017.1| cold-shock DNA-binding domain protein [Taylorella equigenitalis
          MCE9]
          Length = 76

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GF+TPEGS E   D+F+H S++   G   L E Q ++++  +     
Sbjct: 12 TGTVKWFNDTKGFGFVTPEGSNE---DLFIHFSSIQMEGFKTLKENQKISFEITEGPKG- 67

Query: 64 KYSAENLK 71
             A N++
Sbjct: 68 -KQAINIQ 74


>gi|282863823|ref|ZP_06272881.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|282561524|gb|EFB67068.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF H S + + G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQEG---GGADVFAHYSNILAQGFRELQEGQKVNFDVTQGQK 57

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 58 G--PQAENIT 65


>gi|294630457|ref|ZP_06709017.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292833790|gb|EFF92139.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D  Q   
Sbjct: 1  MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELLEGQKVTFDIGQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|167837494|ref|ZP_02464377.1| cold-shock domain family protein [Burkholderia thailandensis
          MSMB43]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V+++ V+   
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIKMEGFKTLKENQRVSFE-VKTGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|319787046|ref|YP_004146521.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317465558|gb|ADV27290.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFITPE    SG D+F+H  ++  +G  +L EGQ V++  VQ   
Sbjct: 4  RQTGTVKWFNDAKGFGFITPE----SGADLFVHFRSIQGSGFKSLQEGQKVSFIVVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++ +
Sbjct: 60 G--LQADQVQAL 69


>gi|258620199|ref|ZP_05715238.1| cold shock transcriptional regulator [Vibrio mimicus VM573]
 gi|258624440|ref|ZP_05719387.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603]
 gi|262171708|ref|ZP_06039386.1| cold shock protein CspA [Vibrio mimicus MB-451]
 gi|258583287|gb|EEW08089.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603]
 gi|258587557|gb|EEW12267.1| cold shock transcriptional regulator [Vibrio mimicus VM573]
 gi|261892784|gb|EEY38770.1| cold shock protein CspA [Vibrio mimicus MB-451]
          Length = 70

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP+     G D+F+H  ++ S G   L+EGQ V ++  Q +   
Sbjct: 6  TGLVKWFNETKGFGFITPD---NGGADLFVHFKSIVSDGFKTLSEGQKVAFNVEQGNKG- 61

Query: 64 KYSAENLKLV 73
             A N+ L+
Sbjct: 62 -PQAANVTLL 70


>gi|225872220|ref|YP_002753675.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
 gi|225791808|gb|ACO31898.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
          Length = 66

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GF+    S + G+DVF+H +A+ + G  +L EGQ V +D V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFL----SRQGGEDVFVHYTAIKTNGFRSLQEGQAVQFDVVKGPK 56

Query: 62 NGKYSAENLKLV 73
             + A+N++++
Sbjct: 57 G--WQADNVQVL 66


>gi|238924737|ref|YP_002938253.1| putative cold-shock DNA-binding domain protein [Eubacterium
          rectale ATCC 33656]
 gi|238876412|gb|ACR76119.1| putative cold-shock DNA-binding domain protein [Eubacterium
          rectale ATCC 33656]
 gi|291526111|emb|CBK91698.1| cold-shock DNA-binding protein family [Eubacterium rectale DSM
          17629]
 gi|291527154|emb|CBK92740.1| cold-shock DNA-binding protein family [Eubacterium rectale
          M104/1]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFIT     E G DVF+H S +   G   L EG  V +D   + A
Sbjct: 1  MSKGTVKWFNNQKGYGFIT----AEDGKDVFVHFSGLNMEGFKTLEEGAAVEFDIT-DGA 55

Query: 62 NGKYSAENLKLVP 74
           G   A N+++V 
Sbjct: 56 KGPQ-AVNVEVVK 67


>gi|209519137|ref|ZP_03267942.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
 gi|209500437|gb|EEA00488.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S + S G  +L E Q V+++  +   
Sbjct: 1  METGVVKWFNDAKGFGFITSDA---GGEDLFAHFSEIRSEGFKSLKENQRVSFEI-KTSP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|148266030|ref|YP_001232736.1| cold-shock DNA-binding domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146399530|gb|ABQ28163.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
          Rf4]
          Length = 66

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI  E    +G+DVF+H SA+   G   L EG  VT+D V+   
Sbjct: 1  MEKGTVKWFNESKGFGFIARE----NGEDVFVHFSAITGEGFKTLAEGDTVTFDVVKG-P 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 KGLQAANVKKV 66


>gi|330448696|ref|ZP_08312344.1| cold-shock domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328492887|dbj|GAA06841.1| cold-shock domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ V++D  Q    G
Sbjct: 5  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVSFDIEQGQ-KG 60

Query: 64 KYSAEN 69
            +A  
Sbjct: 61 PQAANV 66


>gi|295677335|ref|YP_003605859.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
 gi|295437178|gb|ADG16348.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S + S G  +L E Q V+++ V+   
Sbjct: 1  METGVVKWFNDAKGFGFITSDA---GGEDLFAHFSEIRSEGFKSLKENQRVSFE-VKTSP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|218512700|ref|ZP_03509540.1| cold-shock DNA-binding domain protein [Rhizobium etli 8C-3]
          Length = 92

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI P+     G D+F+H SAV ++GL  LTE Q V++D   + 
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPDR---GGADIFVHISAVQASGLAGLTENQNVSFDTEPDR 57

Query: 61 ANGKYSAENLKLVPK 75
                A  L++  +
Sbjct: 58 RGKGPQAVILQIAAE 72


>gi|126173937|ref|YP_001050086.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS155]
 gi|153000230|ref|YP_001365911.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS185]
 gi|160874863|ref|YP_001554179.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS195]
 gi|217973821|ref|YP_002358572.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS223]
 gi|304409808|ref|ZP_07391428.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
 gi|307304164|ref|ZP_07583917.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
 gi|125997142|gb|ABN61217.1| cold-shock DNA-binding protein family [Shewanella baltica OS155]
 gi|151364848|gb|ABS07848.1| putative cold-shock DNA-binding domain protein [Shewanella
          baltica OS185]
 gi|160860385|gb|ABX48919.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195]
 gi|217498956|gb|ACK47149.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223]
 gi|304352326|gb|EFM16724.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183]
 gi|306913062|gb|EFN43485.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175]
 gi|315267099|gb|ADT93952.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI  E    SG DVF+H  A+ S G   L EGQ V++   Q     
Sbjct: 5  TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+ +V
Sbjct: 60 -PQAENVTIV 68


>gi|120599534|ref|YP_964108.1| cold-shock DNA-binding domain-containing protein [Shewanella sp.
          W3-18-1]
 gi|146292469|ref|YP_001182893.1| cold-shock DNA-binding domain-containing protein [Shewanella
          putrefaciens CN-32]
 gi|120559627|gb|ABM25554.1| cold-shock DNA-binding protein family [Shewanella sp. W3-18-1]
 gi|145564159|gb|ABP75094.1| cold-shock DNA-binding protein family [Shewanella putrefaciens
          CN-32]
 gi|319425771|gb|ADV53845.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens
          200]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFI+P+     G D F+H  A+ S G   L EGQ V++D  Q    G
Sbjct: 5  TGVVKWFNEEKGFGFISPD---NGGADAFVHFRAIVSEGFKTLGEGQKVSFDIEQGQ-KG 60

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 61 PQAANVVVL 69


>gi|325499887|gb|EGC97746.1| cold shock-like protein cspB [Escherichia fergusonii ECD227]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   DVF+H SA+ +     L EGQ VT+  V++ A G
Sbjct: 2  TGLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNFRTLFEGQKVTFS-VESGAKG 57

Query: 64 KYSAENL 70
            +A  +
Sbjct: 58 PAAANVI 64


>gi|221369643|ref|YP_002520739.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131]
 gi|221162695|gb|ACM03666.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131]
          Length = 68

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+G I P        DVF+H +A+  AG+  L +GQ VTYD  + D 
Sbjct: 1  MANGTVKWFNSTKGFGSIAP---AHGSKDVFVHVTALERAGIRQLNDGQAVTYDM-ETDR 56

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 57 NGRESAMNLVL 67


>gi|145297910|ref|YP_001140751.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida
          A449]
 gi|142850682|gb|ABO89003.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida
          A449]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI        G DVF+H S++ S G   L EGQ V +   Q   
Sbjct: 4  IRTGQVKWFNETKGFGFIEQSQ----GPDVFVHFSSIQSTGFKTLAEGQKVQFTVTQGQK 59

Query: 62 NGKYSAENLKLV 73
               AEN+ L+
Sbjct: 60 G--PQAENVTLL 69


>gi|15894094|ref|NP_347443.1| cold shock protein [Clostridium acetobutylicum ATCC 824]
 gi|15023696|gb|AAK78783.1|AE007596_4 Cold shock protein [Clostridium acetobutylicum ATCC 824]
 gi|325508221|gb|ADZ19857.1| Cold shock protein [Clostridium acetobutylicum EA 2018]
          Length = 65

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT     E G+DVF H S +   G   L EGQ V+YD V+     
Sbjct: 2  TGTVKWFNGEKGFGFIT----GEDGNDVFAHYSQINVDGYKTLEEGQKVSYDVVKGPKG- 56

Query: 64 KYSAENLKL 72
             AEN+ L
Sbjct: 57 -LQAENITL 64


>gi|73663810|ref|YP_302589.1| cold shock protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72496387|dbj|BAE19644.1| cold shock protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
          Length = 66

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E    +G D+F+H S + + G  +L EGQ V +D  +   
Sbjct: 1  MNNGTVKWFNAEKGFGFIERE----NGSDLFVHFSGIVAEGYKSLEEGQKVEFDITEGQ- 55

Query: 62 NGKYSAENLKL 72
           G+ +   + +
Sbjct: 56 RGEQATNVVTV 66


>gi|33519902|ref|NP_878734.1| cold shock-like protein CspC [Candidatus Blochmannia floridanus]
 gi|33504247|emb|CAD83510.1| cold shock-like protein CspC [Candidatus Blochmannia floridanus]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L+EGQ V ++ VQ+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLSEGQNVEFE-VQDGHKG 60

Query: 64 KYSAENLKL 72
            +     L
Sbjct: 61 PSAVNVTSL 69


>gi|330815856|ref|YP_004359561.1| cold-shock DNA-binding protein family protein [Burkholderia
          gladioli BSR3]
 gi|327368249|gb|AEA59605.1| cold-shock DNA-binding protein family protein [Burkholderia
          gladioli BSR3]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V++D V+   
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIKMDGFKTLKENQRVSFD-VKTGP 56

Query: 62 NGKYSAENLKLV 73
           GK +A N++ V
Sbjct: 57 KGKQAA-NIQAV 67


>gi|168031977|ref|XP_001768496.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680209|gb|EDQ66647.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 178

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFITP+   + G+D+F+H++++ + G  +L EG++V +  V++  +
Sbjct: 3  ETGKVKWFNSSKGFGFITPD---KGGEDLFVHQTSIHAEGFRSLREGEVVEFQ-VESSED 58

Query: 63 GKYSAENLK 71
          G+  A  + 
Sbjct: 59 GRTKALAVT 67


>gi|302532074|ref|ZP_07284416.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302440969|gb|EFL12785.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MAAGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELNEGQKVNFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|197116608|ref|YP_002137035.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|197085968|gb|ACH37239.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
          Length = 66

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI  E    +G+DVF+H SA+   G  +L EG  VT+D VQ   
Sbjct: 1  MAKGVVKWFNDSKGFGFIEQE----NGEDVFVHFSAIQGDGFKSLAEGDSVTFD-VQQGP 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGLQAANVTRV 66


>gi|119945576|ref|YP_943256.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119864180|gb|ABM03657.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI       SG DVF H SA+AS G   L EGQ V +   Q     
Sbjct: 6  QGTVKWFNESKGFGFIEQ----ASGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQGQKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -PQAENI 66


>gi|238898407|ref|YP_002924088.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Candidatus Hamiltonella defensa 5AT
          (Acyrthosiphon pisum)]
 gi|229466166|gb|ACQ67940.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Candidatus Hamiltonella defensa 5AT
          (Acyrthosiphon pisum)]
          Length = 72

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +GS+KW+N  KG+GFITP    +   DVF+H SA+ S+G   L EGQ+V +   +N A 
Sbjct: 6  QKGSVKWFNESKGFGFITP---ADGSKDVFVHFSAIDSSGFKTLGEGQMVEFSI-ENGAK 61

Query: 63 GKYSAENLKLV 73
          G  +A N+ ++
Sbjct: 62 GPSAA-NVSVI 71


>gi|111022638|ref|YP_705610.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|110822168|gb|ABG97452.1| cold shock protein [Rhodococcus jostii RHA1]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI PE   +   DVF+H S + S G   L E Q V+++  Q + 
Sbjct: 1  MAEGIVKWFNSEKGFGFIAPE---DGSADVFVHYSEIQSGGFRTLEENQRVSFEIGQGNK 57

Query: 62 NGKYSAENLKLV 73
               A  + L+
Sbjct: 58 G--PQATGVTLI 67


>gi|77458156|ref|YP_347661.1| cold-shock DNA-binding protein family protein [Pseudomonas
          fluorescens Pf0-1]
 gi|77382159|gb|ABA73672.1| major cold shock protein [Pseudomonas fluorescens Pf0-1]
          Length = 70

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITP+G    GDD+F+H  A+ + G  +L EGQ V++   +   
Sbjct: 4  RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIETDGFKSLKEGQTVSF-VAEKGQ 59

Query: 62 NGKYSAEN 69
           G  +A+ 
Sbjct: 60 KGMQAAQV 67


>gi|332993404|gb|AEF03459.1| stress response protein CspD [Alteromonas sp. SN2]
          Length = 72

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI PE   + G+D+F H S +   G  +L  GQ VTYD  Q   
Sbjct: 1  MAIGKVKWFNNAKGFGFIVPE---DGGEDIFAHYSTIQMEGYRSLKAGQEVTYDVQQGPK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--LHAENI 64


>gi|83645150|ref|YP_433585.1| cold shock protein [Hahella chejuensis KCTC 2396]
 gi|83633193|gb|ABC29160.1| Cold shock protein [Hahella chejuensis KCTC 2396]
          Length = 116

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTES--GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          + +G +KW+N  KGYGFI  +        +D+F+H S++   G   L  GQ V +D  Q 
Sbjct: 1  MPQGKVKWFNNAKGYGFIIADEGNGDLCKEDLFVHFSSIQMEGYKTLKAGQAVNFD-AQP 59

Query: 60 DANGKYSAENLKLVPKSSN 78
             G ++   + +VP  S 
Sbjct: 60 SGKGFHA---VNIVPLESE 75


>gi|163857107|ref|YP_001631405.1| cold shock-like protein [Bordetella petrii DSM 12804]
 gi|163260835|emb|CAP43137.1| cold shock-like protein [Bordetella petrii]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFITPE     G D+F H S + + G  +L E Q V++    N  
Sbjct: 1  METGVVKWFNSEKGYGFITPEA---GGKDLFAHFSEIQANGFKSLEENQRVSF-VTANGP 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPQA 61


>gi|117619984|ref|YP_857934.1| hypothetical protein AHA_3450 [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|117561391|gb|ABK38339.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI        G DVF+H S++ SAG   L EGQ V +   Q   
Sbjct: 4  IRTGQVKWFNETKGFGFIEQSQ----GPDVFVHFSSIQSAGFKTLAEGQKVQFTVTQGKK 59

Query: 62 NGKYSAENLKLV 73
               AEN+ L+
Sbjct: 60 G--PQAENVTLL 69


>gi|116748887|ref|YP_845574.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116697951|gb|ABK17139.1| cold-shock DNA-binding protein family [Syntrophobacter
          fumaroxidans MPOB]
          Length = 66

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  E     G DVF+H SA+   G  +L EG  V++   +  A
Sbjct: 1  MAEGRVKWFNDSKGFGFIERE----GGSDVFVHYSAIEGEGFKSLAEGDRVSF-VAEQGA 55

Query: 62 NGKYSAENLKL 72
           G  +A+  KL
Sbjct: 56 KGPQAAQVRKL 66


>gi|21222160|ref|NP_627939.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|256786753|ref|ZP_05525184.1| cold shock protein [Streptomyces lividans TK24]
 gi|289770647|ref|ZP_06530025.1| cold shock protein [Streptomyces lividans TK24]
 gi|5732895|gb|AAD49327.1|AF162937_1 F40 [Streptomyces coelicolor A3(2)]
 gi|7211015|emb|CAB76995.1| cold shock protein [Streptomyces coelicolor A3(2)]
 gi|289700846|gb|EFD68275.1| cold shock protein [Streptomyces lividans TK24]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIAQDG---GGADVFAHYSNIATQGFRELQEGQRVNFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|15601687|ref|NP_233318.1| cold shock domain-contain protein [Vibrio cholerae O1 biovar
          eltor str. N16961]
 gi|121586695|ref|ZP_01676479.1| cold shock domain family protein [Vibrio cholerae 2740-80]
 gi|121726380|ref|ZP_01679654.1| cold shock domain family protein [Vibrio cholerae V52]
 gi|147671933|ref|YP_001215147.1| cold shock domain-contain protein [Vibrio cholerae O395]
 gi|153212370|ref|ZP_01948152.1| cold shock domain family protein [Vibrio cholerae 1587]
 gi|153801420|ref|ZP_01956006.1| cold shock domain family protein [Vibrio cholerae MZO-3]
 gi|153818328|ref|ZP_01970995.1| cold shock domain family protein [Vibrio cholerae NCTC 8457]
 gi|153821071|ref|ZP_01973738.1| cold shock domain family protein [Vibrio cholerae B33]
 gi|153828039|ref|ZP_01980706.1| cold shock domain family protein [Vibrio cholerae 623-39]
 gi|227812499|ref|YP_002812509.1| cold shock domain family protein [Vibrio cholerae M66-2]
 gi|229505926|ref|ZP_04395435.1| cold shock protein CspA [Vibrio cholerae BX 330286]
 gi|229510220|ref|ZP_04399700.1| cold shock protein CspA [Vibrio cholerae B33]
 gi|229514346|ref|ZP_04403807.1| cold shock protein CspA [Vibrio cholerae TMA 21]
 gi|229517650|ref|ZP_04407095.1| cold shock protein CspA [Vibrio cholerae RC9]
 gi|229522460|ref|ZP_04411876.1| cold shock protein CspA [Vibrio cholerae TM 11079-80]
 gi|229526515|ref|ZP_04415919.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
 gi|229528166|ref|ZP_04417557.1| cold shock protein CspA [Vibrio cholerae 12129(1)]
 gi|229605458|ref|YP_002876162.1| cold shock protein CspA [Vibrio cholerae MJ-1236]
 gi|254224759|ref|ZP_04918375.1| cold shock domain family protein [Vibrio cholerae V51]
 gi|254284560|ref|ZP_04959527.1| cold shock domain family protein [Vibrio cholerae AM-19226]
 gi|254850097|ref|ZP_05239447.1| cold-shock protein CspV [Vibrio cholerae MO10]
 gi|255746324|ref|ZP_05420271.1| cold shock protein CspA [Vibrio cholera CIRS 101]
 gi|262158205|ref|ZP_06029323.1| cold shock protein CspA [Vibrio cholerae INDRE 91/1]
 gi|262169196|ref|ZP_06036889.1| cold shock protein CspA [Vibrio cholerae RC27]
 gi|297580016|ref|ZP_06941943.1| cold-shock protein CspV [Vibrio cholerae RC385]
 gi|298499709|ref|ZP_07009515.1| cold shock domain family protein [Vibrio cholerae MAK 757]
 gi|20138009|sp|Q9KL16|CSPV_VIBCH RecName: Full=Cold shock protein CspV
 gi|15425982|gb|AAK97640.1|AF409091_1 cold-shock protein CspV [Vibrio cholerae]
 gi|9658370|gb|AAF96830.1| cold shock domain family protein [Vibrio cholerae O1 biovar El
          Tor str. N16961]
 gi|121549123|gb|EAX59158.1| cold shock domain family protein [Vibrio cholerae 2740-80]
 gi|121631128|gb|EAX63503.1| cold shock domain family protein [Vibrio cholerae V52]
 gi|124116578|gb|EAY35398.1| cold shock domain family protein [Vibrio cholerae 1587]
 gi|124123086|gb|EAY41829.1| cold shock domain family protein [Vibrio cholerae MZO-3]
 gi|125622822|gb|EAZ51140.1| cold shock domain family protein [Vibrio cholerae V51]
 gi|126511141|gb|EAZ73735.1| cold shock domain family protein [Vibrio cholerae NCTC 8457]
 gi|126521445|gb|EAZ78668.1| cold shock domain family protein [Vibrio cholerae B33]
 gi|146314316|gb|ABQ18856.1| cold shock domain family protein [Vibrio cholerae O395]
 gi|148876448|gb|EDL74583.1| cold shock domain family protein [Vibrio cholerae 623-39]
 gi|150425345|gb|EDN17121.1| cold shock domain family protein [Vibrio cholerae AM-19226]
 gi|227011641|gb|ACP07852.1| cold shock domain family protein [Vibrio cholerae M66-2]
 gi|227015580|gb|ACP11789.1| cold shock domain family protein [Vibrio cholerae O395]
 gi|229334528|gb|EEO00014.1| cold shock protein CspA [Vibrio cholerae 12129(1)]
 gi|229336673|gb|EEO01691.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
 gi|229340445|gb|EEO05451.1| cold shock protein CspA [Vibrio cholerae TM 11079-80]
 gi|229345686|gb|EEO10659.1| cold shock protein CspA [Vibrio cholerae RC9]
 gi|229348326|gb|EEO13284.1| cold shock protein CspA [Vibrio cholerae TMA 21]
 gi|229352665|gb|EEO17605.1| cold shock protein CspA [Vibrio cholerae B33]
 gi|229356277|gb|EEO21195.1| cold shock protein CspA [Vibrio cholerae BX 330286]
 gi|229371944|gb|ACQ62366.1| cold shock protein CspA [Vibrio cholerae MJ-1236]
 gi|254845802|gb|EET24216.1| cold-shock protein CspV [Vibrio cholerae MO10]
 gi|255736078|gb|EET91476.1| cold shock protein CspA [Vibrio cholera CIRS 101]
 gi|262022477|gb|EEY41185.1| cold shock protein CspA [Vibrio cholerae RC27]
 gi|262030083|gb|EEY48729.1| cold shock protein CspA [Vibrio cholerae INDRE 91/1]
 gi|297535662|gb|EFH74496.1| cold-shock protein CspV [Vibrio cholerae RC385]
 gi|297541690|gb|EFH77741.1| cold shock domain family protein [Vibrio cholerae MAK 757]
          Length = 70

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF+T +     G+DVF+H +++ S G   L EGQ V++  V+    G
Sbjct: 6  TGSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLAEGQRVSF-IVEQGKKG 61

Query: 64 KYSAENLKL 72
            ++  + L
Sbjct: 62 PQASNVVAL 70


>gi|161525563|ref|YP_001580575.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          multivorans ATCC 17616]
 gi|189349709|ref|YP_001945337.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|221201211|ref|ZP_03574251.1| conserved domain protein [Burkholderia multivorans CGD2M]
 gi|221206335|ref|ZP_03579348.1| conserved domain protein [Burkholderia multivorans CGD2]
 gi|221213617|ref|ZP_03586591.1| conserved domain protein [Burkholderia multivorans CGD1]
 gi|160342992|gb|ABX16078.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
          ATCC 17616]
 gi|189333731|dbj|BAG42801.1| CspA family cold shock protein [Burkholderia multivorans ATCC
          17616]
 gi|221166406|gb|EED98878.1| conserved domain protein [Burkholderia multivorans CGD1]
 gi|221173644|gb|EEE06078.1| conserved domain protein [Burkholderia multivorans CGD2]
 gi|221179061|gb|EEE11468.1| conserved domain protein [Burkholderia multivorans CGD2M]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V++D V+   
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|146306439|ref|YP_001186904.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina ymp]
 gi|145574640|gb|ABP84172.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KGYGFITP    +SGDD+F+H  A+ S G  +L EGQ V++   +   
Sbjct: 4  RQTGTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSFVATRGQK 59

Query: 62 NGKYSAENLKLV 73
               AE ++++
Sbjct: 60 G--MQAEEVQVI 69


>gi|91200067|emb|CAJ73110.1| strongly similar to cold shock protein A [Candidatus Kuenenia
          stuttgartiensis]
          Length = 66

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI+ +    +G+DVF+H++A+   G   L EG  V ++ V+ D 
Sbjct: 1  MPQGTVKWFNDSKGFGFISQD----NGEDVFVHQTAIECEGFRTLAEGDKVEFEVVK-DQ 55

Query: 62 NGKYSAENLKL 72
           G  + + +KL
Sbjct: 56 KGYKATKVVKL 66


>gi|254477809|ref|ZP_05091195.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp.
          R11]
 gi|214032052|gb|EEB72887.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp.
          R11]
          Length = 68

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PEG    G DVF+H S V  +GL  L + Q V ++ ++   
Sbjct: 1  MANGTVKWFNTTKGYGFIEPEG---GGKDVFVHISQVERSGLTGLADNQKVEFEMIEG-R 56

Query: 62 NGKYSAENLK 71
          +G+  A  ++
Sbjct: 57 DGRQMASEIR 66


>gi|197119112|ref|YP_002139539.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|197088472|gb|ACH39743.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
          Length = 68

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI  +    +G+DVF+H SA+   G  +L EG+ V++D   N  
Sbjct: 1  MAQGKVKWFNDAKGFGFIEQD----NGEDVFVHFSAITGDGFKSLAEGESVSFDVT-NGP 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 KGLQAANVKKL 66


>gi|186474053|ref|YP_001861395.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184196385|gb|ACC74349.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   + GDD+F H S V   G  +L E Q V +D  Q   
Sbjct: 1  MAEGTVKWFNDAKGFGFITPD---DGGDDLFAHFSEVRVNGFKSLQENQRVKFDVKQG-P 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|86748304|ref|YP_484800.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris HaA2]
 gi|86571332|gb|ABD05889.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          HaA2]
          Length = 70

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M + G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +LTEGQ ++++   + 
Sbjct: 1  MPNTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57

Query: 61 ANGKYSAENLKL 72
                A NL +
Sbjct: 58 KGKGPKAVNLVI 69


>gi|288574158|ref|ZP_06392515.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288569899|gb|EFC91456.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 66

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFIT     E G D F+H SA+   G   L EGQ VT+   +N  
Sbjct: 1  MTQGTVKWFNGTKGYGFIT----GEDGKDYFVHFSAINIDGFKTLDEGQAVTFTI-ENGQ 55

Query: 62 NGKYSAENLKLV 73
           G   A N+  V
Sbjct: 56 KGPQ-ASNVSPV 66


>gi|119775105|ref|YP_927845.1| cold-shock DNA-binding domain-containing protein [Shewanella
          amazonensis SB2B]
 gi|119767605|gb|ABM00176.1| cold-shock DNA-binding protein family [Shewanella amazonensis
          SB2B]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI  E     G DVF+H  A+ + G   L EGQ V++   Q     
Sbjct: 5  TGVVKWFNADKGFGFIAQEA----GPDVFVHFRAINTDGFKTLDEGQKVSFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 60 -PQAENVTVI 68


>gi|24374322|ref|NP_718365.1| cold shock domain-contain protein [Shewanella oneidensis MR-1]
 gi|113970742|ref|YP_734535.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-4]
 gi|114047969|ref|YP_738519.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-7]
 gi|117921010|ref|YP_870202.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          ANA-3]
 gi|24348871|gb|AAN55809.1|AE015718_1 cold shock domain family protein [Shewanella oneidensis MR-1]
 gi|113885426|gb|ABI39478.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4]
 gi|113889411|gb|ABI43462.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7]
 gi|117613342|gb|ABK48796.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI  E    SG DVF+H  A+ S G   L EGQ V++   Q     
Sbjct: 5  TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 60 -PQAENVTVI 68


>gi|269139481|ref|YP_003296182.1| major cold shock protein [Edwardsiella tarda EIB202]
 gi|267985142|gb|ACY84971.1| major cold shock protein [Edwardsiella tarda EIB202]
 gi|304559373|gb|ADM42037.1| Cold shock protein CspG [Edwardsiella tarda FL6-60]
          Length = 71

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +  V+N   G
Sbjct: 6  TGSVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNEFRTLDEGQQVEFS-VENGPKG 61

Query: 64 KYSAENLKL 72
            +   + +
Sbjct: 62 PSAVNVVAI 70


>gi|90578292|ref|ZP_01234103.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|90441378|gb|EAS66558.1| putative Cold shock-like protein [Vibrio angustum S14]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ V++D  Q    G
Sbjct: 5  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVSFDIEQGQ-KG 60

Query: 64 KYSAEN 69
            +A  
Sbjct: 61 PQAANV 66


>gi|301062851|ref|ZP_07203444.1| cold shock protein CspD [delta proteobacterium NaphS2]
 gi|300443051|gb|EFK07223.1| cold shock protein CspD [delta proteobacterium NaphS2]
          Length = 66

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++  KG+GFI  E     G DVF+H SA+   G  +L EG  V++D  +   
Sbjct: 1  MANGTVKWFSDQKGFGFIEQE----DGPDVFVHHSAILMEGFKSLNEGDQVSFDIEEGQK 56

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 57 G--PAAANVKVM 66


>gi|227872733|ref|ZP_03991058.1| cold shock protein CspA [Oribacterium sinus F0268]
 gi|227841428|gb|EEJ51733.1| cold shock protein CspA [Oribacterium sinus F0268]
          Length = 65

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI+     E+G DVF+H S ++  G  +L EGQ V ++ V + A G
Sbjct: 2  KGTVKWFNNQKGYGFIS----DETGKDVFVHYSGLSGDGFKSLEEGQAVEFEVV-DGAKG 56

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 57 PQATNVVKL 65


>gi|261250705|ref|ZP_05943279.1| putative Cold shock-like protein [Vibrio orientalis CIP 102891]
 gi|260937578|gb|EEX93566.1| putative Cold shock-like protein [Vibrio orientalis CIP 102891]
          Length = 70

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF+T +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 6  TGSVKWFNETKGFGFLTQD---NGGADVFVHFRAIASDGFKTLNEGQKVSFEVEQGQ-KG 61

Query: 64 KYSAENL 70
            +A  +
Sbjct: 62 LQAANVV 68


>gi|253988509|ref|YP_003039865.1| cold shock-like protein [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|211637909|emb|CAR66538.1| cold shock-like protein (cps-i) [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253779959|emb|CAQ83120.1| cold shock-like protein (cps-i) [Photorhabdus asymbiotica]
          Length = 71

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N DKG+GFI+P        DVF+H SA+ S     L EGQ V++   +N A G
Sbjct: 6  TGSVKWFNNDKGFGFISP---KNGSKDVFVHYSAIQSNNFKTLEEGQEVSFSI-ENGAKG 61

Query: 64 KYSAENLKLV 73
            SA N+ ++
Sbjct: 62 P-SAVNVIVL 70


>gi|16262549|ref|NP_435342.1| CspA5 cold shock protein transcriptional regulator [Sinorhizobium
          meliloti 1021]
 gi|307300703|ref|ZP_07580478.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307319113|ref|ZP_07598543.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|14523160|gb|AAK64754.1| CspA7 cold shock protein [Sinorhizobium meliloti 1021]
 gi|306895220|gb|EFN25976.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306904237|gb|EFN34822.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N DKG+GFITPE   + G DVF+H SA+   G  +L EG  V+YD  Q+  
Sbjct: 1  MPKGTVKFFNDDKGFGFITPE---DGGTDVFVHVSALQHGG--SLKEGDKVSYDVGQDRK 55

Query: 62 NGKYSAENLKLV 73
           GK  AEN+ ++
Sbjct: 56 TGKSKAENVSVL 67


>gi|16765332|ref|NP_460947.1| cold-shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|56413093|ref|YP_150168.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|161613431|ref|YP_001587396.1| hypothetical protein SPAB_01147 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|197362019|ref|YP_002141656.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|205352312|ref|YP_002226113.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|207856492|ref|YP_002243143.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|224583507|ref|YP_002637305.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|238912431|ref|ZP_04656268.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Tennessee str. CDC07-0191]
 gi|325530013|sp|E1WGN1|CSPJ_SALTS RecName: Full=Cold shock-like protein CspJ
 gi|325530014|sp|P0CL01|CSPJ_SALTY RecName: Full=Cold shock-like protein CspJ
 gi|2961317|emb|CAA72682.1| cspB [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420530|gb|AAL20906.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|56127350|gb|AAV76856.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|161362795|gb|ABX66563.1| hypothetical protein SPAB_01147 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|197093496|emb|CAR58956.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|205272093|emb|CAR36945.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|206708295|emb|CAR32598.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|224468034|gb|ACN45864.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|261247161|emb|CBG24984.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. D23580]
 gi|267993987|gb|ACY88872.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|301158509|emb|CBW18019.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. SL1344]
 gi|312912986|dbj|BAJ36960.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. T000240]
 gi|320085386|emb|CBY95167.1| Cold shock-like protein cspG CPS-G [Salmonella enterica subsp.
          enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224641|gb|EFX49704.1| Cold shock protein CspG [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|322616988|gb|EFY13896.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 315996572]
 gi|322618228|gb|EFY15120.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-1]
 gi|322625898|gb|EFY22717.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-3]
 gi|322626350|gb|EFY23160.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-4]
 gi|322632765|gb|EFY29510.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 515920-1]
 gi|322639107|gb|EFY35800.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 515920-2]
 gi|322640379|gb|EFY37036.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 531954]
 gi|322647216|gb|EFY43715.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. NC_MB110209-0054]
 gi|322648415|gb|EFY44868.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. OH_2009072675]
 gi|322655544|gb|EFY51852.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. CASC_09SCPH15965]
 gi|322660322|gb|EFY56560.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 19N]
 gi|322663003|gb|EFY59210.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 81038-01]
 gi|322668188|gb|EFY64347.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. MD_MDA09249507]
 gi|322674053|gb|EFY70147.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 414877]
 gi|322675595|gb|EFY71669.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 366867]
 gi|322682994|gb|EFY79010.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 413180]
 gi|322686688|gb|EFY82666.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 446600]
 gi|323130275|gb|ADX17705.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
 gi|323195075|gb|EFZ80259.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 609458-1]
 gi|323197875|gb|EFZ83000.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 556150-1]
 gi|323204480|gb|EFZ89486.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 609460]
 gi|323207570|gb|EFZ92518.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 507440-20]
 gi|323210991|gb|EFZ95851.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 556152]
 gi|323217555|gb|EGA02274.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB101509-0077]
 gi|323222458|gb|EGA06829.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB102109-0047]
 gi|323227477|gb|EGA11639.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB110209-0055]
 gi|323231577|gb|EGA15690.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB111609-0052]
 gi|323236020|gb|EGA20099.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 2009083312]
 gi|323240590|gb|EGA24633.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 2009085258]
 gi|323245482|gb|EGA29482.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. 315731156]
 gi|323247600|gb|EGA31551.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2009159199]
 gi|323254428|gb|EGA38244.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008282]
 gi|323257760|gb|EGA41440.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008283]
 gi|323262133|gb|EGA45696.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008284]
 gi|323266256|gb|EGA49746.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008285]
 gi|323270733|gb|EGA54172.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008287]
 gi|326622839|gb|EGE29184.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Dublin str. 3246]
 gi|326627359|gb|EGE33702.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
 gi|332988884|gb|AEF07867.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
          Length = 70

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+NP+KG+GFITP    +   DVF+H SA+ S     L E Q V +   Q    G
Sbjct: 6  TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQG-PKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVVAL 70


>gi|295698317|ref|YP_003602972.1| hypothetical protein RIEPE_0091 [Candidatus Riesia pediculicola
          USDA]
 gi|291157076|gb|ADD79521.1| conserved domain protein [Candidatus Riesia pediculicola USDA]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +GS+KW+N  KG+GFI+PE   +   DVF+H +++ S G   LTEGQ V +D   N   G
Sbjct: 5  KGSVKWFNEAKGFGFISPE---DGSKDVFVHFTSIQSEGFKTLTEGQKVEFDVA-NGEKG 60

Query: 64 KYSAENLKL 72
            +   + +
Sbjct: 61 PSAINVVAI 69


>gi|291246380|ref|YP_003505766.1| putative cold-shock protein C [Staphylococcus simulans bv.
          staphylolyticus]
 gi|290463911|gb|ADD24898.1| putative cold-shock protein C [Staphylococcus simulans bv.
          staphylolyticus]
          Length = 66

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E    +G+DVF+H S +A  G  +L EGQ V +D +  D 
Sbjct: 1  MNNGTVKWFNSEKGFGFIERE----NGNDVFVHFSGIAGEGYKSLEEGQNVDFDIIDGD- 55

Query: 62 NGKYSAENL 70
           G  +   +
Sbjct: 56 RGPQATNVV 64


>gi|311694945|gb|ADP97818.1| cold shock, CspA [marine bacterium HP15]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI  +     G DVF+H SA+ ++G   LTEGQ V +   Q    
Sbjct: 5  KTGHVKWFNESKGFGFIAQD----GGSDVFVHYSAINASGFRTLTEGQQVQFTVTQGPKG 60

Query: 63 GKYSAENLKLV 73
              AEN+  V
Sbjct: 61 --PQAENVTPV 69


>gi|269468409|gb|EEZ80074.1| cold shock protein [uncultured SUP05 cluster bacterium]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW++  KG+GFI  E    SGDDVF+H  A+   G  +L EGQ V +D  ++ 
Sbjct: 1  MSTTGKVKWFDAKKGFGFIEQE----SGDDVFVHFRAIQGDGYKSLEEGQEVVFDL-EDG 55

Query: 61 ANGKYSAEN 69
          A G  +A  
Sbjct: 56 AKGPQAANV 64


>gi|254000444|ref|YP_003052507.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. SIP3-4]
 gi|313202403|ref|YP_004041061.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. MP688]
 gi|253987123|gb|ACT51980.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4]
 gi|312441719|gb|ADQ85825.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+   + G D+F H SA+A  G  +L +   V+++ + +  
Sbjct: 1  MATGIVKWFNDSKGFGFITPD---DGGSDLFAHYSAIADTGYKSLKDNDRVSFEVI-DGP 56

Query: 62 NGKYSAENLK 71
           GK  A N++
Sbjct: 57 KGKQ-ASNIQ 65


>gi|153876303|ref|ZP_02003697.1| Cold shock protein [Beggiatoa sp. PS]
 gi|152067232|gb|EDN66302.1| Cold shock protein [Beggiatoa sp. PS]
          Length = 71

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E     G DVF+H +++ + G  +L EGQ VT +  Q     
Sbjct: 7  TGTVKWFNDSKGFGFIEQEA---GGPDVFVHHTSIQADGFKSLQEGQKVTMEVTQGQKG- 62

Query: 64 KYSAENL 70
             AEN+
Sbjct: 63 -LQAENV 68


>gi|146308090|ref|YP_001188555.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina ymp]
 gi|145576291|gb|ABP85823.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp]
          Length = 69

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFI  E    SG DVF+H  A+   G   L EGQ V +   Q   
Sbjct: 4  RETGTVKWFNDSKGYGFIQRE----SGPDVFVHYRAIRGEGHRTLIEGQKVEFGVTQGQK 59

Query: 62 NGKYSAENLKLV 73
               AE++  +
Sbjct: 60 G--LQAEDVSAL 69


>gi|94971545|ref|YP_593593.1| cold-shock DNA-binding protein family protein [Candidatus
          Koribacter versatilis Ellin345]
 gi|94553595|gb|ABF43519.1| cold-shock DNA-binding protein family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 66

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFI+     ++G+DVF+H SA+ S G  +L EGQ VT+  V+   
Sbjct: 1  MEQGTVKWFNDAKGYGFIS----RQNGEDVFVHFSAIESKGFRSLQEGQAVTFSVVKGPK 56

Query: 62 NGKYSAENLKLV 73
             + AE +  +
Sbjct: 57 G--WQAEKVSAL 66


>gi|115350919|ref|YP_772758.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria AMMD]
 gi|170698521|ref|ZP_02889592.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171315542|ref|ZP_02904778.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|172059932|ref|YP_001807584.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|115280907|gb|ABI86424.1| cold-shock DNA-binding protein family [Burkholderia ambifaria
          AMMD]
 gi|170136605|gb|EDT04862.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          IOP40-10]
 gi|171099379|gb|EDT44117.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MEX-5]
 gi|171992449|gb|ACB63368.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria
          MC40-6]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V+++ V+   
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMDGFKTLKENQRVSFE-VKLGP 56

Query: 62 NGKYSAENLKLV 73
           GK +A N++ V
Sbjct: 57 KGKQAA-NIQAV 67


>gi|330445023|ref|ZP_08308677.1| transcription antiterminator and regulator of RNA stability
          [Photobacterium leiognathi subsp. mandapamensis
          svers.1.1.]
 gi|328493141|dbj|GAA03174.1| transcription antiterminator and regulator of RNA stability
          [Photobacterium leiognathi subsp. mandapamensis
          svers.1.1.]
          Length = 68

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFI+       G DVF+H SA+ + G   L EGQ V +  V +   G
Sbjct: 5  TGTVKWFNDDKGFGFIS----GADGKDVFVHFSAIQAQGRRTLREGQSVEF-IVTDGQKG 59

Query: 64 KYSAENLKL 72
            ++E + L
Sbjct: 60 PQASEVVAL 68


>gi|311031676|ref|ZP_07709766.1| cold shock protein [Bacillus sp. m3-13]
          Length = 65

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  +G     DDVF+H SA+   G  +L EGQ VT++  Q   
Sbjct: 1  MLEGKVKWFNAEKGFGFIEVDGQ----DDVFVHFSAIQGEGFKSLEEGQTVTFEIEQGAR 56

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 57 G--PQATNVQ 64


>gi|301059113|ref|ZP_07200063.1| cold shock protein CspB [delta proteobacterium NaphS2]
 gi|300446786|gb|EFK10601.1| cold shock protein CspB [delta proteobacterium NaphS2]
          Length = 66

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++  KGYGFI  E     G DVF+H S +   G   L EG  V+++  +   
Sbjct: 1  MAEGTVKWFDEKKGYGFIEQE----DGPDVFVHFSGINGTGFKTLNEGARVSFEVEEGQR 56

Query: 62 NGKYSAENLKLV 73
              +A N+ ++
Sbjct: 57 G--PAAANVTVI 66


>gi|292670014|ref|ZP_06603440.1| cold shock protein [Selenomonas noxia ATCC 43541]
 gi|292648315|gb|EFF66287.1| cold shock protein [Selenomonas noxia ATCC 43541]
          Length = 66

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++ DKGYGFI+ E     GDDVF+H S++   G   L+EGQ V +D V+  A G
Sbjct: 2  TGKVKWFSADKGYGFISRE----DGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVEG-ARG 56

Query: 64 KYSAENLK 71
            +   +K
Sbjct: 57 PQADNVIK 64


>gi|33592837|ref|NP_880481.1| cold shock-like protein [Bordetella pertussis Tohama I]
 gi|61221519|sp|P0A352|CSPA_BORPE RecName: Full=Cold shock-like protein CspA
 gi|61221520|sp|P0A353|CSPA_BORBR RecName: Full=Cold shock-like protein CspA
 gi|61221521|sp|P0A354|CSPA_BORPA RecName: Full=Cold shock-like protein CspA
 gi|4468119|emb|CAB38009.1| CspA protein; cold shock protein A [Bordetella pertussis Tohama
          I]
 gi|33572485|emb|CAE42057.1| cold shock-like protein [Bordetella pertussis Tohama I]
 gi|332382250|gb|AEE67097.1| cold shock-like protein [Bordetella pertussis CS]
          Length = 67

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFITPE     G D+F H S + + G  +L E Q V++       
Sbjct: 1  METGVVKWFNAEKGYGFITPEA---GGKDLFAHFSEIQANGFKSLEENQRVSF-VTAMGP 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPQA 61


>gi|89075964|ref|ZP_01162336.1| cold shock protein [Photobacterium sp. SKA34]
 gi|90581356|ref|ZP_01237152.1| cold shock protein [Vibrio angustum S14]
 gi|89048313|gb|EAR53892.1| cold shock protein [Photobacterium sp. SKA34]
 gi|90437466|gb|EAS62661.1| cold shock protein [Vibrio angustum S14]
          Length = 68

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFI+       G DVF+H SA+ + G   L EGQ V +  V +   G
Sbjct: 5  TGTVKWFNDDKGFGFIS----GTDGKDVFVHFSAIQAQGRRTLREGQSVEF-IVTDGQKG 59

Query: 64 KYSAENLKL 72
            ++E + L
Sbjct: 60 PQASEVIAL 68


>gi|320333865|ref|YP_004170576.1| cold-shock DNA-binding domain-containing protein [Deinococcus
          maricopensis DSM 21211]
 gi|319755154|gb|ADV66911.1| cold-shock DNA-binding domain protein [Deinococcus maricopensis
          DSM 21211]
          Length = 86

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI          DVF H SA+   G   L EG  V +D  +   
Sbjct: 1  MAVGKVKWFNAEKGFGFIE----VAGSPDVFAHFSAIKGTGFKKLNEGDEVEFDIEEGQR 56

Query: 62 NGKYSAENLKLVPKSSN 78
               A N+ +   +  
Sbjct: 57 GKGPQAANIVVTKAAPE 73


>gi|308270250|emb|CBX26862.1| Cold shock-like protein cspLA [uncultured Desulfobacterium sp.]
          Length = 66

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E    +G DVF+H SA+ + G  +L+EG  VT++  Q   
Sbjct: 1  MINGTVKWFNDQKGFGFIEQE----NGPDVFVHHSAINATGFKSLSEGSHVTFEIEQGPK 56

Query: 62 NGKYSAENLKL 72
              +A N+ L
Sbjct: 57 G--PAASNVTL 65


>gi|194337522|ref|YP_002019316.1| cold-shock DNA-binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194309999|gb|ACF44699.1| cold-shock DNA-binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 74

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 5/74 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KG+GFI P+     G DVF+H + +  +GL  L E   V YD V+  
Sbjct: 6  MADTGTVKWFNKMKGFGFIIPD---NGGADVFVHINELEKSGLATLNEADKVKYDMVE-- 60

Query: 61 ANGKYSAENLKLVP 74
           NGK +A N++L+ 
Sbjct: 61 KNGKVAAGNIQLLK 74


>gi|42780307|ref|NP_977554.1| cold shock protein CspA [Bacillus cereus ATCC 10987]
 gi|228906859|ref|ZP_04070728.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|228957503|ref|ZP_04119255.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228984303|ref|ZP_04144484.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229042975|ref|ZP_04190706.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|229084220|ref|ZP_04216504.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
 gi|229095719|ref|ZP_04226698.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|229101818|ref|ZP_04232533.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|229114669|ref|ZP_04244083.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|229143839|ref|ZP_04272258.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|229149436|ref|ZP_04277672.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|229160184|ref|ZP_04288183.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|229195434|ref|ZP_04322202.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|296501833|ref|YP_003663533.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|42736226|gb|AAS40162.1| cold shock protein CspA [Bacillus cereus ATCC 10987]
 gi|209972092|gb|ACJ03557.1| cold shock protein [Bacillus cereus]
 gi|209972100|gb|ACJ03561.1| cold shock protein [Bacillus thuringiensis serovar tohokuensis]
 gi|228587974|gb|EEK46024.1| Cold shock protein cspB [Bacillus cereus m1293]
 gi|228623145|gb|EEK79972.1| Cold shock protein cspB [Bacillus cereus R309803]
 gi|228634078|gb|EEK90671.1| Cold shock protein cspB [Bacillus cereus m1550]
 gi|228639600|gb|EEK96011.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24]
 gi|228668734|gb|EEL24162.1| Cold shock protein cspB [Bacillus cereus Rock1-3]
 gi|228681611|gb|EEL35773.1| Cold shock protein cspB [Bacillus cereus Rock3-28]
 gi|228687552|gb|EEL41451.1| Cold shock protein cspB [Bacillus cereus Rock3-29]
 gi|228699098|gb|EEL51799.1| Cold shock protein cspB [Bacillus cereus Rock3-44]
 gi|228726315|gb|EEL77541.1| Cold shock protein cspB [Bacillus cereus AH676]
 gi|228775420|gb|EEM23805.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228802095|gb|EEM48960.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228852863|gb|EEM97648.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200]
 gi|296322885|gb|ADH05813.1| cold shock protein [Bacillus thuringiensis BMB171]
 gi|324325246|gb|ADY20506.1| cold shock protein CspA [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 67

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++  + +
Sbjct: 1  MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFEIEEGN 56

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 57 -RGPQAKNVIKL 67


>gi|328883511|emb|CCA56750.1| cold shock protein [Streptomyces venezuelae ATCC 10712]
          Length = 67

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q   
Sbjct: 1  MANGTVKWFNAEKGFGFIEQDG---GGPDVFAHFSNIAAQGFRELQEGQKVSFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|319787350|ref|YP_004146825.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317465862|gb|ADV27594.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 69

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFI+ E    +G+DVF+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RETGTVKWFNDAKGFGFISRE----NGEDVFVHFRAIQMQGFKSLKEGQKVTFTVVQGQK 59

Query: 62 NGKYSAE 68
            +  A 
Sbjct: 60 GLQADAV 66


>gi|259505713|ref|ZP_05748615.1| cold shock protein [Corynebacterium efficiens YS-314]
 gi|259166686|gb|EEW51240.1| cold shock protein [Corynebacterium efficiens YS-314]
          Length = 67

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P   ++   DVF+H S +   G  NL E Q V ++  +   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAP---SDGSADVFVHYSEIQGNGFRNLEENQQVEFELGEGAK 57

Query: 62 NGKYSAENLKLV 73
               A+ ++ +
Sbjct: 58 G--PQAQQVRAL 67


>gi|166032459|ref|ZP_02235288.1| hypothetical protein DORFOR_02174 [Dorea formicigenerans ATCC
          27755]
 gi|166026816|gb|EDR45573.1| hypothetical protein DORFOR_02174 [Dorea formicigenerans ATCC
          27755]
          Length = 65

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI    S ESG+DVF+H S +   G  +L EGQ V +D  +  A G
Sbjct: 2  KGTVKWFNNQKGYGFI----SDESGNDVFVHYSGLNMEGFKSLEEGQEVEFDVTEG-AKG 56

Query: 64 KYSAENLKL 72
            +    KL
Sbjct: 57 PQAVNVTKL 65


>gi|117620914|ref|YP_857368.1| hypothetical protein AHA_2864 [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|145298472|ref|YP_001141313.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida
          A449]
 gi|117562321|gb|ABK39269.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
 gi|142851244|gb|ABO89565.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida
          A449]
          Length = 69

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI  E    +G DVF+H SA++  G   L EGQ V +   Q   
Sbjct: 4  MITGTVKFFNETKGFGFIQQE----NGPDVFVHFSAISGNGFRTLAEGQRVQFSVTQGQK 59

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 60 G--PQAENVTAL 69


>gi|330504261|ref|YP_004381130.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina NK-01]
 gi|328918547|gb|AEB59378.1| cold-shock DNA-binding protein family protein [Pseudomonas
          mendocina NK-01]
          Length = 69

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFI  E    SG DVF+H  A+   G   L EGQ V +   Q   
Sbjct: 4  RETGTVKWFNDSKGYGFIQRE----SGPDVFVHYRAIRGEGHRTLVEGQKVEFGVTQGQK 59

Query: 62 NGKYSAENLKLV 73
               AE++  +
Sbjct: 60 G--LQAEDVSAL 69


>gi|238756793|ref|ZP_04618027.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
 gi|238704988|gb|EEP97471.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
          Length = 75

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP   T+   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 11 TGLVKWFDAGKGFGFITP---TDGSKDVFVHFSAIQSNDFKTLDEGQSVEFSI-ENGAKG 66

Query: 64 KYSAENLKL 72
            +A  + +
Sbjct: 67 PSAANVVAV 75


>gi|91793637|ref|YP_563288.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217]
 gi|91715639|gb|ABE55565.1| cold-shock DNA-binding protein family [Shewanella denitrificans
          OS217]
          Length = 69

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI  E    SG DVF+H  A+ S G   L EGQ V++   Q     
Sbjct: 5  TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+ +V
Sbjct: 60 -PQAENVSVV 68


>gi|297538451|ref|YP_003674220.1| cold-shock DNA-binding domain-containing protein [Methylotenera
          sp. 301]
 gi|297257798|gb|ADI29643.1| cold-shock DNA-binding domain protein [Methylotenera sp. 301]
          Length = 67

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+     GDD+F H SA+  +G  +L E   V++D   +  
Sbjct: 1  MATGLVKWFNDSKGFGFITPDA---GGDDLFAHFSAIVDSGYKSLKENDRVSFDVT-DGP 56

Query: 62 NGKYSAENLK 71
           GK  A N++
Sbjct: 57 KGKQ-ASNIQ 65


>gi|229028904|ref|ZP_04185005.1| Cold shock protein cspB [Bacillus cereus AH1271]
 gi|229171874|ref|ZP_04299443.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|210077339|gb|ACJ06956.1| cold shock protein [Bacillus thuringiensis serovar azorensis]
 gi|228611584|gb|EEK68837.1| Cold shock protein cspB [Bacillus cereus MM3]
 gi|228732475|gb|EEL83356.1| Cold shock protein cspB [Bacillus cereus AH1271]
          Length = 67

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++  ++ 
Sbjct: 1  MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFEI-EDG 55

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 56 NRGPQAKNVIKL 67


>gi|119503460|ref|ZP_01625543.1| Cold shock protein [marine gamma proteobacterium HTCC2080]
 gi|119460522|gb|EAW41614.1| Cold shock protein [marine gamma proteobacterium HTCC2080]
          Length = 68

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFI  E     G DVF+H SA+   G   LT+GQ V +         
Sbjct: 5  TGTVKWFNETKGYGFIEQE----GGPDVFVHFSAIQGDGFKTLTDGQKVQFTVATGQKG- 59

Query: 64 KYSAENL 70
             AEN+
Sbjct: 60 -PQAENV 65


>gi|90422418|ref|YP_530788.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisB18]
 gi|90104432|gb|ABD86469.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB18]
          Length = 70

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +L EGQ ++++   + 
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLIEGQRISFEVEPDK 57

Query: 61 ANGKYSAENLKL 72
                A NL L
Sbjct: 58 KGKGPKAVNLVL 69


>gi|239628310|ref|ZP_04671341.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          bacterium 1_7_47_FAA]
 gi|239518456|gb|EEQ58322.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          bacterium 1_7_47FAA]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KG+GFIT E   E+G+D+F+H S +AS G  +L +GQ VT+D    + 
Sbjct: 1  MNKGTVKWFNSQKGFGFITNE---ENGEDIFVHFSGIASNGFKSLEDGQSVTFDITNGNR 57

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 58 G--LQAVNV 64


>gi|161502877|ref|YP_001569989.1| hypothetical protein SARI_00934 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864224|gb|ABX20847.1| hypothetical protein SARI_00934 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 70

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+NP+KG+GFITP    +   DVF+H SA+ S     L E Q V +   Q    G
Sbjct: 6  TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFRTLNENQEVEFSVEQG-PKG 61

Query: 64 KYSAENLKL 72
            + + + L
Sbjct: 62 PSAVDVVAL 70


>gi|163802086|ref|ZP_02195982.1| cold shock-like protein CspD [Vibrio sp. AND4]
 gi|159174227|gb|EDP59035.1| cold shock-like protein CspD [Vibrio sp. AND4]
          Length = 72

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +   E   D+F H S +   G   L  GQ V+Y+  +   
Sbjct: 1  MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYEI-EKGP 56

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 57 KGSHASSVVPI 67


>gi|294011151|ref|YP_003544611.1| cold shock protein CspA [Sphingobium japonicum UT26S]
 gi|292674481|dbj|BAI95999.1| cold shock protein CspA [Sphingobium japonicum UT26S]
          Length = 70

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKGYGFI P+   +   D F+H SAV   GL  L E   V+YD  Q D
Sbjct: 1  MSIIGTVKFFNADKGYGFIAPD---DGSPDAFVHISAVERGGLATLREKDRVSYDLEQ-D 56

Query: 61 ANGKYSAENLK 71
            GK +A N++
Sbjct: 57 KRGKMAAVNIQ 67


>gi|270055541|gb|ACZ59034.1| cold-shock protein C [Staphylococcus aureus]
          Length = 66

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFI  +  +    DVF+H S +A  G  +L EGQ V +D V+   
Sbjct: 1  MNNGTVKWFNADKGFGFIERDNDS----DVFVHYSGIAGEGYKSLEEGQNVDFDIVEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--EQATNVVAI 66


>gi|254386942|ref|ZP_05002225.1| cold-shock domain containing protein [Streptomyces sp. Mg1]
 gi|194345770|gb|EDX26736.1| cold-shock domain containing protein [Streptomyces sp. Mg1]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF H S +A+ G   L EGQ VT+D  Q   
Sbjct: 1  MAAGTVKWFNAEKGFGFIEQEG---GGPDVFAHYSNIAAQGFRELLEGQKVTFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|222053850|ref|YP_002536212.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
 gi|221563139|gb|ACM19111.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI+ +     G+DVF+H SA++  G   L EG  VT+D V+   
Sbjct: 1  MEKGIVKWFNESKGFGFISRDT----GEDVFVHFSAISGEGFKTLNEGDAVTFDVVKG-P 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 KGPQAANV 63


>gi|254282468|ref|ZP_04957436.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR51-B]
 gi|219678671|gb|EED35020.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR51-B]
          Length = 68

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFI  E     G DVF+H SA+   G   L++GQ V +          
Sbjct: 6  GTVKWFNETKGYGFIEQE----GGPDVFVHFSAIQGDGFKTLSDGQKVEFTVANGQKG-- 59

Query: 65 YSAENL 70
            AEN+
Sbjct: 60 PQAENV 65


>gi|253698845|ref|YP_003020034.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
 gi|251773695|gb|ACT16276.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
          Length = 66

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI  E    +G+DVF+H SA+   G  +L EG  VT+D VQ   
Sbjct: 1  MAKGVVKWFNDSKGFGFIEQE----NGEDVFVHFSAIQGEGFKSLAEGDSVTFD-VQQGP 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGLQAANVTRV 66


>gi|118602909|ref|YP_904124.1| cold-shock DNA-binding protein family protein [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
 gi|118567848|gb|ABL02653.1| cold-shock DNA-binding protein family [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW++  KG+GFI  E    +GDDVF+H  A+   G  +L EGQ V +D  Q +
Sbjct: 1  MSTTGKVKWFDAKKGFGFIEQE----NGDDVFVHFRAIQGDGYKSLEEGQEVEFDLEQGE 56

Query: 61 ANGK 64
             +
Sbjct: 57 KGPQ 60


>gi|52840671|ref|YP_094470.1| cold shock protein CspD [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|54296462|ref|YP_122831.1| hypothetical protein lpp0493 [Legionella pneumophila str. Paris]
 gi|296105977|ref|YP_003617677.1| cold shock protein CspD [Legionella pneumophila 2300/99 Alcoy]
 gi|52627782|gb|AAU26523.1| cold shock protein CspD [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|53750247|emb|CAH11641.1| hypothetical protein lpp0493 [Legionella pneumophila str. Paris]
 gi|295647878|gb|ADG23725.1| cold shock protein CspD [Legionella pneumophila 2300/99 Alcoy]
 gi|307609235|emb|CBW98700.1| hypothetical protein LPW_05081 [Legionella pneumophila 130b]
          Length = 77

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N  KG+GFI PEG    G+D+F+H S++   G   L  GQ VTYD V N  
Sbjct: 1  MARGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLVPGQAVTYDVV-NGE 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G +++  + L   +  
Sbjct: 57 RGLHASNVVALSENAEQ 73


>gi|270159041|ref|ZP_06187697.1| cold shock protein [Legionella longbeachae D-4968]
 gi|289166123|ref|YP_003456261.1| Cold shock-like protein CspD [Legionella longbeachae NSW150]
 gi|269987380|gb|EEZ93635.1| cold shock protein [Legionella longbeachae D-4968]
 gi|288859296|emb|CBJ13230.1| putative Cold shock-like protein CspD [Legionella longbeachae
          NSW150]
          Length = 76

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N  KG+GFI PE     GDD+F+H S++   G   L  GQ+V YD  Q D 
Sbjct: 1  MARGEVKWFNNAKGWGFIIPE---NEGDDIFVHFSSIHGTGYKTLAPGQIVNYDVEQGD- 56

Query: 62 NGKYSAENLKL 72
           G ++A  + L
Sbjct: 57 KGLHAANVIVL 67


>gi|302535426|ref|ZP_07287768.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302444321|gb|EFL16137.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +G    GDDVF H S +A+ G   L EGQ VT+D  Q   
Sbjct: 1  MASGTVKWFNAAKGFGFIEQDG---GGDDVFAHFSNIATQGFRELLEGQKVTFDIAQGQK 57

Query: 62 NGKYSAENLKLV 73
              +AEN+  V
Sbjct: 58 G--PTAENIVPV 67


>gi|291550100|emb|CBL26362.1| cold-shock DNA-binding protein family [Ruminococcus torques
          L2-14]
          Length = 65

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFI+       G+D+F+H S +   G  +L EGQ V ++  +  A G
Sbjct: 2  TGTVKWFNNQKGYGFIS----DAEGNDIFVHYSGLVMDGFKSLEEGQAVEFEVTEG-AKG 56

Query: 64 KYSAENLKL 72
            +   +KL
Sbjct: 57 PQAVNVVKL 65


>gi|71725891|gb|AAZ39064.1| cold shock protein [Exiguobacterium sibiricum]
 gi|71725893|gb|AAZ39065.1| cold shock protein [Exiguobacterium undae]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 5/65 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  E    SGDDVF+H SA+ + G  +L EGQ V+++ V+    G 
Sbjct: 4  GIVKWFNAEKGFGFIERE----SGDDVFVHFSAIQTDGFKSLDEGQEVSFE-VEEGQRGP 58

Query: 65 YSAEN 69
           +A  
Sbjct: 59 PAANV 63


>gi|317488560|ref|ZP_07947105.1| cold-shock' DNA-binding domain-containing protein [Eggerthella
          sp. 1_3_56FAA]
 gi|325832026|ref|ZP_08165123.1| cold shock protein CspB [Eggerthella sp. HGA1]
 gi|316912302|gb|EFV33866.1| cold-shock' DNA-binding domain-containing protein [Eggerthella
          sp. 1_3_56FAA]
 gi|325486347|gb|EGC88799.1| cold shock protein CspB [Eggerthella sp. HGA1]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP+KGYGFI+     + G+D+F+H S +   G   L EG  V +D      
Sbjct: 1  MAEGTVKWFNPEKGYGFISQ----KDGEDLFVHFSEIKMDGFKTLDEGAAVQFDVT-TGQ 55

Query: 62 NGKYSAENLK 71
          NGK  A N+ 
Sbjct: 56 NGKLQASNVT 65


>gi|104783408|ref|YP_609906.1| cold shock protein [Pseudomonas entomophila L48]
 gi|95112395|emb|CAK17122.1| cold shock protein [Pseudomonas entomophila L48]
          Length = 69

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KGYGFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQNGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59

Query: 62 N 62
           
Sbjct: 60 G 60


>gi|114705002|ref|ZP_01437910.1| cold shock protein [Fulvimarina pelagi HTCC2506]
 gi|114539787|gb|EAU42907.1| cold shock protein [Fulvimarina pelagi HTCC2506]
          Length = 70

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N +KG+GFI P+     G D+F+H SAV ++GL  L E Q V+++   + 
Sbjct: 1  MAQTGTVKFFNTEKGFGFIKPD---NGGADIFVHISAVQASGLAGLEENQKVSFETEPDK 57

Query: 61 ANGKYSAENLK 71
                A NL+
Sbjct: 58 RGKGPKAVNLE 68


>gi|163939029|ref|YP_001643913.1| cold-shock DNA-binding domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|229010524|ref|ZP_04167726.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048]
 gi|229056860|ref|ZP_04196256.1| Cold shock-like protein cspB [Bacillus cereus AH603]
 gi|229132025|ref|ZP_04260888.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196]
 gi|229166069|ref|ZP_04293831.1| Cold shock-like protein cspB [Bacillus cereus AH621]
 gi|2493761|sp|Q45096|CSPA_BACCE RecName: Full=Major cold shock protein CspA
 gi|1405470|emb|CAA63607.1| CspA protein [Bacillus cereus]
 gi|163861226|gb|ABY42285.1| cold-shock DNA-binding domain protein [Bacillus
          weihenstephanensis KBAB4]
 gi|209972082|gb|ACJ03552.1| cold shock protein [Bacillus thuringiensis serovar bolivia]
 gi|209972084|gb|ACJ03553.1| cold shock protein [Bacillus weihenstephanensis]
 gi|209972102|gb|ACJ03562.1| cold shock protein [Bacillus thuringiensis serovar vazensis]
 gi|209972104|gb|ACJ03563.1| cold shock protein [Bacillus mycoides]
 gi|209972106|gb|ACJ03564.1| cold shock protein [Bacillus weihenstephanensis]
 gi|210077343|gb|ACJ06958.1| cold shock protein [Bacillus thuringiensis serovar navarrensis]
 gi|228617378|gb|EEK74441.1| Cold shock-like protein cspB [Bacillus cereus AH621]
 gi|228651425|gb|EEL07397.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196]
 gi|228720388|gb|EEL71961.1| Cold shock-like protein cspB [Bacillus cereus AH603]
 gi|228750722|gb|EEM00546.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++  ++ 
Sbjct: 1  MTVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFEI-EDG 55

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 56 NRGPQAKNVIKL 67


>gi|89256660|ref|YP_514022.1| cold shock protein [Francisella tularensis subsp. holarctica LVS]
 gi|156502808|ref|YP_001428873.1| cold-shock DNA-binding domain-containing protein [Francisella
          tularensis subsp. holarctica FTNF002-00]
 gi|167010528|ref|ZP_02275459.1| hypothetical protein Ftulh_07407 [Francisella tularensis subsp.
          holarctica FSC200]
 gi|254367972|ref|ZP_04983992.1| cold shock protein [Francisella tularensis subsp. holarctica 257]
 gi|290953400|ref|ZP_06558021.1| cold shock protein [Francisella tularensis subsp. holarctica
          URFT1]
 gi|295313361|ref|ZP_06803970.1| cold shock protein [Francisella tularensis subsp. holarctica
          URFT1]
 gi|89144491|emb|CAJ79800.1| cold shock protein [Francisella tularensis subsp. holarctica LVS]
 gi|134253782|gb|EBA52876.1| cold shock protein [Francisella tularensis subsp. holarctica 257]
 gi|156253411|gb|ABU61917.1| cold-shock DNA-binding domain protein [Francisella tularensis
          subsp. holarctica FTNF002-00]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFI P    + G DVF+H SAV +AGL +L E + V+++  +N  
Sbjct: 1  MRQGTVKFFNTSKGFGFIEP---QDGGKDVFVHISAVENAGLSSLRESEKVSFEVEEN-- 55

Query: 62 NGKYSAENLK 71
           GK +A N+K
Sbjct: 56 RGKMAAVNIK 65


>gi|319400565|gb|EFV88795.1| cold shock protein cspD [Staphylococcus epidermidis FRI909]
          Length = 66

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFI  +    +G+DVF+H S +A  G  +L EGQ V +D V+   
Sbjct: 1  MNNGTVKWFNVDKGFGFIERD----NGNDVFVHYSGIAGEGYKSLEEGQNVDFDIVEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 57 G--EQATNVVVM 66


>gi|225174262|ref|ZP_03728261.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
 gi|225170047|gb|EEG78842.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus
          AHT 1]
          Length = 65

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI     T  G+DVF+H SA+ + G  NL EGQ V++D V+ +  G
Sbjct: 2  TGKVKWFNSDKGFGFIE----TSEGNDVFVHFSAIQAEGFKNLEEGQDVSFDVVEGN-RG 56

Query: 64 KYSAENL 70
            +A  +
Sbjct: 57 PQAANVV 63


>gi|209972096|gb|ACJ03559.1| cold shock protein [Bacillus weihenstephanensis]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++  ++ 
Sbjct: 1  MTVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIENDGFKSLEEGQKVSFEI-EDG 55

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 56 NRGPQAKNVIKL 67


>gi|218778357|ref|YP_002429675.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218759741|gb|ACL02207.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 66

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI  E     G DVF+H +A+   G   L EG  V++D  Q   
Sbjct: 1  MANGTVKWFNDAKGYGFIEQE----EGGDVFVHYTAITGKGFRTLAEGDRVSFDVEQGQK 56

Query: 62 NGKYSAENL 70
              +A N+
Sbjct: 57 G--PAATNV 63


>gi|86157700|ref|YP_464485.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|197122991|ref|YP_002134942.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|220917780|ref|YP_002493084.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85774211|gb|ABC81048.1| cold-shock DNA-binding protein family [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|196172840|gb|ACG73813.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K]
 gi|219955634|gb|ACL66018.1| cold-shock DNA-binding domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+ +G    G+DVF+H +A+ + G  +L EGQ V ++ V+   
Sbjct: 1  MASGTVKWFNDAKGFGFISQDG---GGEDVFVHHTAIVAEGFRSLQEGQRVEFE-VKKGP 56

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 57 KGLQAANV 64


>gi|316932717|ref|YP_004107699.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris DX-1]
 gi|315600431|gb|ADU42966.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          DX-1]
          Length = 70

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +LTEGQ ++++   + 
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57

Query: 61 ANGKYSAENLKL 72
                A NL +
Sbjct: 58 KGKGPKAVNLVV 69


>gi|209972088|gb|ACJ03555.1| cold shock protein [Bacillus thuringiensis serovar finitimus]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++  + +
Sbjct: 1  MAVTGQVKWFNSEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFEIEEGN 56

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 57 -RGPQAKNVIKL 67


>gi|148652145|ref|YP_001279238.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          sp. PRwf-1]
 gi|148653967|ref|YP_001281060.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          sp. PRwf-1]
 gi|148571229|gb|ABQ93288.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1]
 gi|148573051|gb|ABQ95110.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1]
          Length = 69

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 5/63 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI PE     G DVF H S +AS+G   L EGQ V +   Q  A G
Sbjct: 6  KGTVKWFNEAKGFGFIAPET----GPDVFAHYSEIASSGFKTLAEGQEVEFTVTQG-AKG 60

Query: 64 KYS 66
            +
Sbjct: 61 PQA 63


>gi|109900083|ref|YP_663338.1| cold-shock DNA-binding domain-containing protein
          [Pseudoalteromonas atlantica T6c]
 gi|109702364|gb|ABG42284.1| cold-shock DNA-binding protein family [Pseudoalteromonas
          atlantica T6c]
          Length = 69

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N DKG+GFI  E    SG DVF H SA+ S G   L EGQ V +   Q     
Sbjct: 6  TGSVKWFNEDKGFGFIEQE----SGPDVFAHFSAIVSEGFKTLAEGQRVEFTVTQGQKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -PQAENI 66


>gi|90408353|ref|ZP_01216516.1| cold shock DNA-binding domain protein [Psychromonas sp. CNPT3]
 gi|90310516|gb|EAS38638.1| cold shock DNA-binding domain protein [Psychromonas sp. CNPT3]
          Length = 69

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H SA+ S G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNESKGFGFIEQE----NGPDVFAHFSAIVSNGFKTLAEGQKVQFTVTQGQKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -PQAENI 66


>gi|292487397|ref|YP_003530269.1| cold shock-like protein CspG [Erwinia amylovora CFBP1430]
 gi|292898644|ref|YP_003538013.1| cold shock protein [Erwinia amylovora ATCC 49946]
 gi|291198492|emb|CBJ45600.1| cold shock protein [Erwinia amylovora ATCC 49946]
 gi|291552816|emb|CBA19861.1| Cold shock-like protein cspG (CPS-G) [Erwinia amylovora CFBP1430]
 gi|312171502|emb|CBX79760.1| Cold shock-like protein cspG (CPS-G) [Erwinia amylovora ATCC
          BAA-2158]
          Length = 70

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++PDKG+GFI+P   T+   DVF+H SA+ + G   L EGQ V +   +N   G 
Sbjct: 7  GLVKWFSPDKGFGFISP---TDGSKDVFVHFSAIQNGGFKTLEEGQKVEFTI-ENGQKGP 62

Query: 65 YSAENLKL 72
           +A    L
Sbjct: 63 AAANVTAL 70


>gi|262165515|ref|ZP_06033252.1| cold shock protein CspA [Vibrio mimicus VM223]
 gi|262402390|ref|ZP_06078951.1| cold shock protein CspA [Vibrio sp. RC586]
 gi|262025231|gb|EEY43899.1| cold shock protein CspA [Vibrio mimicus VM223]
 gi|262351172|gb|EEZ00305.1| cold shock protein CspA [Vibrio sp. RC586]
          Length = 70

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP+     G D+F+H  ++ S G   L EGQ V ++  Q +   
Sbjct: 6  TGLVKWFNETKGFGFITPD---NGGADLFVHFKSIVSDGFKTLAEGQKVAFNVEQGNKG- 61

Query: 64 KYSAENLKLV 73
             A N+ ++
Sbjct: 62 -PQAANVTVL 70


>gi|239832396|ref|ZP_04680725.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301]
 gi|239824663|gb|EEQ96231.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301]
          Length = 96

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N +KG+GFI P+   + G D+F+H SAV ++GL  L + Q V+Y+   + 
Sbjct: 26 MAQTGQVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLTGLADNQKVSYETEPDR 82

Query: 61 ANGKYSAENLKL 72
                A N+ +
Sbjct: 83 RGKGPKAVNITV 94


>gi|299138194|ref|ZP_07031374.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX8]
 gi|322436378|ref|YP_004218590.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|298600124|gb|EFI56282.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX8]
 gi|321164105|gb|ADW69810.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 66

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI+     ++G+DVF+H SA+ S G  +L EGQ V ++ V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFIS----RQNGEDVFVHYSAINSNGFKSLQEGQAVQFNVVKGPK 56

Query: 62 NGKYSAENLKLV 73
             + A +++ +
Sbjct: 57 G--WQASDVQPL 66


>gi|300855130|ref|YP_003780114.1| cold-shock protein [Clostridium ljungdahlii DSM 13528]
 gi|300435245|gb|ADK15012.1| cold-shock protein [Clostridium ljungdahlii DSM 13528]
          Length = 65

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT     E G DVF H S + S G  +L EGQ V+YD V+     
Sbjct: 2  NGTVKWFNGEKGFGFIT----GEDGKDVFAHFSQINSNGYKSLDEGQKVSYDVVEGPKG- 56

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 57 -LQAENITTI 65


>gi|254252966|ref|ZP_04946284.1| Cold-shock protein [Burkholderia dolosa AUO158]
 gi|124895575|gb|EAY69455.1| Cold-shock protein [Burkholderia dolosa AUO158]
 gi|325524697|gb|EGD02687.1| cold shock-like protein [Burkholderia sp. TJI49]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V++D V+   
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|71278580|ref|YP_269596.1| cold shock-like protein CspD [Colwellia psychrerythraea 34H]
 gi|71144320|gb|AAZ24793.1| cold shock-like protein CspD [Colwellia psychrerythraea 34H]
          Length = 72

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G+D+F H S +   G   L  GQ V Y+   +  
Sbjct: 1  MAHGTVKWFNNAKGFGFIRPDS---GGEDIFAHYSTIEMDGYRTLKAGQDVDYEL-NDGP 56

Query: 62 NGKYSA 67
           G ++A
Sbjct: 57 KGHHAA 62


>gi|88800616|ref|ZP_01116177.1| cold-shock DNA-binding domain family protein [Reinekea sp.
          MED297]
 gi|88776671|gb|EAR07885.1| cold-shock DNA-binding domain family protein [Reinekea sp.
          MED297]
          Length = 68

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      ++G DVF H SA+  +G   L EGQ V +   Q     
Sbjct: 5  TGTVKWFNEAKGFGFIEQ----QNGPDVFAHFSAITGSGFKTLAEGQKVEFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 60 -PQAENIVAI 68


>gi|323140506|ref|ZP_08075434.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT
          12067]
 gi|322415074|gb|EFY05865.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT
          12067]
          Length = 68

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 8/74 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G++KW+N  KGYGFI       +G +VF+H SA+ S G   L EGQ V+Y      
Sbjct: 1  MLSIGTVKWFNNTKGYGFIE----ARNGQEVFVHFSAIRSDGYRCLQEGQRVSYHL---- 52

Query: 61 ANGKYSAENLKLVP 74
          + GK+    L + P
Sbjct: 53 SRGKHGPMALNVSP 66


>gi|307331143|ref|ZP_07610270.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306883223|gb|EFN14282.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELQEGQKVNFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|120554651|ref|YP_959002.1| cold-shock DNA-binding domain-containing protein [Marinobacter
          aquaeolei VT8]
 gi|120324500|gb|ABM18815.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei
          VT8]
          Length = 69

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI  E     G DVF+H SA+ + G   L EGQ V +   Q    
Sbjct: 5  KTGHVKWFNESKGFGFIAQE----GGSDVFVHYSAINANGFRTLAEGQQVQFTVTQGPKG 60

Query: 63 GKYSAENLKLV 73
              AEN+  +
Sbjct: 61 --PQAENVTPL 69


>gi|237807342|ref|YP_002891782.1| cold-shock DNA-binding domain-containing protein [Tolumonas
          auensis DSM 9187]
 gi|237499603|gb|ACQ92196.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM
          9187]
          Length = 69

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF++ +     G DVF+H SA+AS G   L EGQ V++D  +     
Sbjct: 5  NGSVKWFNETKGFGFLSQD---NGGKDVFVHFSAIASTGFKTLAEGQAVSFDIEEGQRG- 60

Query: 64 KYSAENLKL 72
            SA N+ +
Sbjct: 61 -PSAVNVTV 68


>gi|195970700|gb|ACG60738.1| putative cold shock protein [Streptomyces flavoviridis]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V++D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVSFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|210617492|ref|ZP_03291595.1| hypothetical protein CLONEX_03817 [Clostridium nexile DSM 1787]
 gi|210149279|gb|EEA80288.1| hypothetical protein CLONEX_03817 [Clostridium nexile DSM 1787]
          Length = 68

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW++  KG+GFIT E S   G D+F+H S +A  G   L EGQ V++D  Q   
Sbjct: 1  MNTGTVKWFDSQKGFGFITNEQS---GKDIFVHFSGIALNGFKTLEEGQQVSFDTTQGPR 57

Query: 62 NGKYSAENLKLVP 74
               A N+  + 
Sbjct: 58 G--EQAVNVNYIM 68


>gi|209886327|ref|YP_002290184.1| putative cold-shock' DNA-binding domain [Oligotropha
          carboxidovorans OM5]
 gi|209874523|gb|ACI94319.1| putative cold-shock' DNA-binding domain [Oligotropha
          carboxidovorans OM5]
          Length = 71

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL NL EGQ +T++   + 
Sbjct: 1  MAMTGTVKFFNAERGYGFIKPD---DGGRDVFVHITAVERAGLKNLVEGQQITFEVEPDK 57

Query: 61 ANGKYSAENLKL 72
                A NL +
Sbjct: 58 KGKGPKAVNLVV 69


>gi|88811641|ref|ZP_01126895.1| probable cold-shock protein [Nitrococcus mobilis Nb-231]
 gi|88791032|gb|EAR22145.1| probable cold-shock protein [Nitrococcus mobilis Nb-231]
          Length = 70

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KGYGFI+ E     G DVF+H  A+   G   L EGQ V +D V+    G 
Sbjct: 7  GVVKWFDDSKGYGFISQEQ----GPDVFVHFRAIRGEGFRTLREGQRVEFDIVEG-PKGL 61

Query: 65 YSAENLKLV 73
           +++ + ++
Sbjct: 62 QASDVVAML 70


>gi|291517937|emb|CBK73158.1| cold-shock DNA-binding protein family [Butyrivibrio fibrisolvens
          16/4]
          Length = 67

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KGYGFI    S E G DVF+H S + S G   L EG  V Y+   + A
Sbjct: 1  MSKGTVKWFNNSKGYGFI----SDEEGKDVFVHFSGINSEGFKTLEEGATVEYEVT-DGA 55

Query: 62 NGKYSAENLKLV 73
           G   A N+ +V
Sbjct: 56 KGPQ-AVNVTVV 66


>gi|269102226|ref|ZP_06154923.1| cold shock protein CspD [Photobacterium damselae subsp. damselae
          CIP 102761]
 gi|268162124|gb|EEZ40620.1| cold shock protein CspD [Photobacterium damselae subsp. damselae
          CIP 102761]
          Length = 73

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PE   +   D+F H S +   G   L  GQ V Y+ VQ   
Sbjct: 1  MAIGTVKWFNNAKGFGFICPE---DGDGDIFAHYSTIQMDGYRTLKAGQQVNYE-VQTGP 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G ++ E   + P  SN
Sbjct: 57 KGFHARE---ITPIESN 70


>gi|253700127|ref|YP_003021316.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
 gi|251774977|gb|ACT17558.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
          Length = 68

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI  +    +G+DVF+H SA+   G  +L EG+ V++D   N  
Sbjct: 1  MAQGKVKWFNDAKGFGFIEQD----NGEDVFVHFSAITGDGFKSLAEGESVSFDVT-NGP 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 KGLQAANVKKI 66


>gi|90023400|ref|YP_529227.1| cold-shock DNA-binding protein family protein [Saccharophagus
          degradans 2-40]
 gi|89953000|gb|ABD83015.1| cold-shock DNA-binding protein family [Saccharophagus degradans
          2-40]
          Length = 69

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      +SG DVF H SA+AS+G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNESKGFGFIEQ----KSGPDVFAHFSAIASSGFKTLAEGQQVEFTVTQGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 61 -PQAENIVAI 69


>gi|256822193|ref|YP_003146156.1| cold-shock DNA-binding domain-containing protein [Kangiella
          koreensis DSM 16069]
 gi|256795732|gb|ACV26388.1| cold-shock DNA-binding domain protein [Kangiella koreensis DSM
          16069]
          Length = 69

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  E    +G DVF H SA+AS+G   L EGQ V +         
Sbjct: 6  KGTVKWFNEAKGFGFIEQE----NGPDVFAHFSAIASSGFKTLAEGQQVEFTLTDGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 61 -PQAENITAL 69


>gi|126664621|ref|ZP_01735605.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
          ELB17]
 gi|126630947|gb|EBA01561.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
          ELB17]
          Length = 68

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT E     G DVF+H SA+   G   L EGQ V +   Q     
Sbjct: 5  TGTVKFFNEAKGFGFITRE----GGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 60 -PQAENVVPL 68


>gi|77362297|ref|YP_341871.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76877208|emb|CAI89425.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 68

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI  E    SG DVF H SA+ S G   L EGQ V +   Q     
Sbjct: 5  TGSVKWFNEAKGFGFIEQE----SGPDVFAHFSAITSDGFKTLAEGQRVQFTVTQGQKG- 59

Query: 64 KYSAENL 70
             AEN+
Sbjct: 60 -PQAENI 65


>gi|326796216|ref|YP_004314036.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
 gi|326546980|gb|ADZ92200.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
          Length = 70

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  E     G DVF+H  A+   G  +L EGQ VT++  Q      
Sbjct: 8  GIVKWFNDEKGFGFIERE----GGPDVFVHFRAINGTGRRSLQEGQKVTFEVTQGQKG-- 61

Query: 65 YSAENLKLV 73
            AEN+ +V
Sbjct: 62 PQAENVTVV 70


>gi|331007546|ref|ZP_08330704.1| Cold shock protein CspC [gamma proteobacterium IMCC1989]
 gi|330418644|gb|EGG93152.1| Cold shock protein CspC [gamma proteobacterium IMCC1989]
          Length = 78

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + G++KW+N  +GYGFI+ E  +E   D+F+H   + S G  +L EGQ V +   + D 
Sbjct: 12 RNTGTVKWFNNSRGYGFISCEAKSE---DIFVHYRNIQSEGYRSLNEGQSVEFSLAEGD- 67

Query: 62 NGKYSAENL 70
           G  + E +
Sbjct: 68 KGLQAEEVV 76


>gi|320155835|ref|YP_004188214.1| cold shock protein CspD [Vibrio vulnificus MO6-24/O]
 gi|319931147|gb|ADV86011.1| cold shock protein CspD [Vibrio vulnificus MO6-24/O]
          Length = 73

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +       D+F H S +   G   L  GQ VTY+  +   
Sbjct: 1  MATGTVKWFNNAKGFGFICSDQEE---GDIFAHYSTIQMDGYRTLKAGQQVTYEI-EKGP 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G +++  + L  +++ 
Sbjct: 57 KGCHASSVVPLEVQATK 73


>gi|258622545|ref|ZP_05717567.1| cold shock domain family protein [Vibrio mimicus VM573]
 gi|258625538|ref|ZP_05720427.1| cold shock domain family protein [Vibrio mimicus VM603]
 gi|262164476|ref|ZP_06032214.1| cold shock protein CspA [Vibrio mimicus VM223]
 gi|262173410|ref|ZP_06041087.1| cold shock protein CspA [Vibrio mimicus MB-451]
 gi|262403011|ref|ZP_06079571.1| cold shock protein CspA [Vibrio sp. RC586]
 gi|258582182|gb|EEW07042.1| cold shock domain family protein [Vibrio mimicus VM603]
 gi|258585245|gb|EEW09972.1| cold shock domain family protein [Vibrio mimicus VM573]
 gi|261890768|gb|EEY36755.1| cold shock protein CspA [Vibrio mimicus MB-451]
 gi|262026856|gb|EEY45523.1| cold shock protein CspA [Vibrio mimicus VM223]
 gi|262350510|gb|EEY99643.1| cold shock protein CspA [Vibrio sp. RC586]
          Length = 70

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF+T +     G+DVF+H +++ S G   LTEGQ V++   Q    G
Sbjct: 6  TGSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLTEGQRVSFTVEQG-KKG 61

Query: 64 KYSAENLKL 72
            ++  + L
Sbjct: 62 PQASNVVTL 70


>gi|149378085|ref|ZP_01895807.1| cold shock protein [Marinobacter algicola DG893]
 gi|149357654|gb|EDM46154.1| cold shock protein [Marinobacter algicola DG893]
          Length = 66

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI  +     G DVF+H SA+ ++G   LTEGQ V +   Q    
Sbjct: 2  KTGHVKWFNESKGFGFIAQD----GGSDVFVHYSAINASGFRTLTEGQQVQFTVTQGPKG 57

Query: 63 GKYSAENLKLV 73
              AEN+  V
Sbjct: 58 --PQAENVTPV 66


>gi|121997901|ref|YP_001002688.1| cold-shock DNA-binding domain-containing protein [Halorhodospira
          halophila SL1]
 gi|121589306|gb|ABM61886.1| cold-shock DNA-binding protein family [Halorhodospira halophila
          SL1]
          Length = 69

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G++KW++  KGYGFI+ E     G+DVF+H  A+   G  +L EGQ V +   ++  
Sbjct: 4  RQQGTVKWFDNAKGYGFISRE----GGEDVFVHFRAIRGDGFRSLDEGQAVEFSVTRSPK 59

Query: 62 NGKYSAENLKLV 73
               AE++  V
Sbjct: 60 G--LQAEDVAAV 69


>gi|325963821|ref|YP_004241727.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323469908|gb|ADX73593.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 67

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFITP+ S     DVF+H S + + G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFITPDDSD---GDVFVHYSEIQTGGFKTLDENQRVQFEIGQGAK 57

Query: 62 NGKYSAENLKLV 73
               A  + +V
Sbjct: 58 G--PQATGVTVV 67


>gi|104774747|ref|YP_619727.1| cold shock protein A [Lactobacillus delbrueckii subsp. bulgaricus
          ATCC 11842]
 gi|116514883|ref|YP_813789.1| cold shock protein [Lactobacillus delbrueckii subsp. bulgaricus
          ATCC BAA-365]
 gi|313124689|ref|YP_004034948.1| cold shock-like protein, cspa family [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|21633215|gb|AAM52983.1| CspA protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC
          11842]
 gi|103423828|emb|CAI98855.1| Cold shock protein A [Lactobacillus delbrueckii subsp. bulgaricus
          ATCC 11842]
 gi|116094198|gb|ABJ59351.1| cold-shock DNA-binding protein family [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC BAA-365]
 gi|312281252|gb|ADQ61971.1| cold shock-like protein, CspA family [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|325126587|gb|ADY85917.1| cold shock protein [Lactobacillus delbrueckii subsp. bulgaricus
          2038]
 gi|325685001|gb|EGD27141.1| cold shock protein CspA [Lactobacillus delbrueckii subsp. lactis
          DSM 20072]
          Length = 65

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKG+GFIT         DVF+H S++ + G  +L EGQ V+YD  Q + 
Sbjct: 1  MQNGTVKWFNADKGFGFITGSDG-----DVFVHFSSIKTNGFKSLEEGQKVSYDVEQGN- 54

Query: 62 NGKYSAENL 70
           G  +   +
Sbjct: 55 RGPQATNVV 63


>gi|315123024|ref|YP_004065030.1| cold shock protein [Pseudoalteromonas sp. SM9913]
 gi|315016784|gb|ADT70121.1| cold shock protein [Pseudoalteromonas sp. SM9913]
          Length = 69

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  E    +G DVF H SA+ S G   L EGQ V +   Q      
Sbjct: 7  GTVKWFNESKGFGFIEQE----NGPDVFAHFSAIKSEGFKTLAEGQRVEFTLSQGQKG-- 60

Query: 65 YSAENLKLV 73
            A+N+  +
Sbjct: 61 PQADNITAL 69


>gi|294653627|gb|ADF28646.1| cold shock protein [Bacillus subtilis]
          Length = 68

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           +KW+N +KG+GFI  E     G DVF+H SA+   G   L EGQ V+++ V+ +  G  
Sbjct: 7  KVKWFNSEKGFGFIEVE----GGSDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN-RGPQ 61

Query: 66 SAENLK 71
          +A   K
Sbjct: 62 AANVTK 67


>gi|148265731|ref|YP_001232437.1| cold-shock DNA-binding domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146399231|gb|ABQ27864.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
          Rf4]
          Length = 66

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI  +    +G+DVF+H SA+   G  +LTEG+ V++D   N  
Sbjct: 1  MAQGKVKWFNDAKGFGFIEQD----NGEDVFVHFSAITGEGFKSLTEGEAVSFDVT-NGP 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 KGLQAANVKKI 66


>gi|307823664|ref|ZP_07653893.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307735649|gb|EFO06497.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 66

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  E    +G DVF+H   + S+G  +L EGQ V +   Q   
Sbjct: 1  MTTGTVKWFNAEKGFGFIQQE----NGPDVFVHFRNINSSGFKSLDEGQKVQFTVTQGQK 56

Query: 62 NGKYSAENLKLV 73
               AE + ++
Sbjct: 57 G--PQAEEVTII 66


>gi|229591581|ref|YP_002873700.1| major cold shock protein [Pseudomonas fluorescens SBW25]
 gi|229363447|emb|CAY50649.1| major cold shock protein [Pseudomonas fluorescens SBW25]
          Length = 70

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ V++   +   
Sbjct: 4  RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAEKGQ 59

Query: 62 NGKYSAEN 69
           G  +A+ 
Sbjct: 60 KGMQAAQV 67


>gi|302384852|ref|YP_003820674.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
 gi|302195480|gb|ADL03051.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
          Length = 67

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N  KGYGFI  + +   G++VF+H S + + G   L EGQ VTY+  + + 
Sbjct: 1  MNNGTVKWFNGAKGYGFIVNDAT---GEEVFVHFSGIVADGYKTLEEGQKVTYETTEGNR 57

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 58 G--LQAVNV 64


>gi|225873881|ref|YP_002755340.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
 gi|225792075|gb|ACO32165.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
          Length = 66

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI+     ++G+DVF+H SA++S G  +L EGQ V ++ V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFIS----RQNGEDVFVHYSAISSNGFRSLQEGQAVQFNVVKGPK 56

Query: 62 NGKYSAENLKLV 73
             + A +++ +
Sbjct: 57 G--WQAADVQPL 66


>gi|222149316|ref|YP_002550273.1| cold shock protein [Agrobacterium vitis S4]
 gi|221736300|gb|ACM37263.1| cold shock protein [Agrobacterium vitis S4]
          Length = 71

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N DKG+GFI P+     G D+F+H SAV ++GL  L+E Q V++D   + 
Sbjct: 1  MAETGIVKFFNNDKGFGFIKPD---NGGADIFVHISAVQASGLNGLSENQKVSFDTEPDR 57

Query: 61 ANGKYSAENLKL 72
                A NL++
Sbjct: 58 RGKGPKAVNLQI 69


>gi|157375749|ref|YP_001474349.1| cold-shock DNA-binding domain-containing protein [Shewanella
          sediminis HAW-EB3]
 gi|157318123|gb|ABV37221.1| cold-shock DNA-binding domain protein [Shewanella sediminis
          HAW-EB3]
          Length = 68

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI  E    SG DVF+H  A+ S G   L EGQ V +   Q     
Sbjct: 5  TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+ +V
Sbjct: 60 -PQAENVTIV 68


>gi|71066401|ref|YP_265128.1| cold-shock DNA-binding protein family protein [Psychrobacter
          arcticus 273-4]
 gi|93006957|ref|YP_581394.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          cryohalolentis K5]
 gi|71039386|gb|AAZ19694.1| cold-shock DNA-binding protein family [Psychrobacter arcticus
          273-4]
 gi|92394635|gb|ABE75910.1| cold-shock DNA-binding protein family [Psychrobacter
          cryohalolentis K5]
          Length = 69

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G++KW+N  KG+GFI PE     G DVF H S +  +G   L EGQ V +   Q    
Sbjct: 5  QKGTVKWFNEAKGFGFIAPET----GADVFAHYSEITGSGFKTLAEGQEVEFTVTQGQKG 60

Query: 63 GKYSAENLKLV 73
              A N+  +
Sbjct: 61 --PQAHNIVAI 69


>gi|114049935|emb|CAK50952.1| putative cold shock protein [Streptomyces ambofaciens]
 gi|114050157|emb|CAK51190.1| putative cold shock protein [Streptomyces ambofaciens]
          Length = 67

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D  Q   
Sbjct: 1  MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVTFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|107022084|ref|YP_620411.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia AU 1054]
 gi|116689028|ref|YP_834651.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia HI2424]
 gi|170732317|ref|YP_001764264.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|206561351|ref|YP_002232116.1| cold shock-like protein [Burkholderia cenocepacia J2315]
 gi|254246036|ref|ZP_04939357.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
 gi|105892273|gb|ABF75438.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          AU 1054]
 gi|116647117|gb|ABK07758.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia
          HI2424]
 gi|124870812|gb|EAY62528.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
 gi|169815559|gb|ACA90142.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia
          MC0-3]
 gi|198037393|emb|CAR53328.1| cold shock-like protein [Burkholderia cenocepacia J2315]
          Length = 67

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V++D V+   
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGP 56

Query: 62 NGKYSAENLKLV 73
           GK +A N++ V
Sbjct: 57 KGKQAA-NIQAV 67


>gi|149908417|ref|ZP_01897080.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
 gi|149808580|gb|EDM68515.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
          Length = 68

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H SA+ S G   L E Q V ++        
Sbjct: 5  TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAIESDGFRTLLENQKVEFNVTDGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 60 -PQAENIVVL 68


>gi|71725903|gb|AAZ39070.1| cold shock protein [Exiguobacterium acetylicum]
          Length = 67

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 5/65 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  E    SGDDVF+H SA+ S G  +L EGQ V+++ V+    G 
Sbjct: 4  GKVKWFNSEKGFGFIERE----SGDDVFVHFSAIQSEGFKSLDEGQEVSFE-VEEGQRGP 58

Query: 65 YSAEN 69
           +A  
Sbjct: 59 QAANV 63


>gi|88798702|ref|ZP_01114285.1| Cold shock protein [Reinekea sp. MED297]
 gi|88778465|gb|EAR09657.1| Cold shock protein [Reinekea sp. MED297]
          Length = 87

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  +   E   D+F H S++   G   L  GQ V ++ V+++ 
Sbjct: 1  MPVGKVKWFNNAKGFGFIVCDDHKE---DLFAHFSSIQMEGYKTLKAGQDVEFETVKSER 57

Query: 62 NGKYSAENLKLV 73
               A N+++V
Sbjct: 58 G--IHAVNIQVV 67


>gi|91975763|ref|YP_568422.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          BisB5]
 gi|91682219|gb|ABE38521.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB5]
          Length = 70

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +LTEGQ ++++   + 
Sbjct: 1  MSMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57

Query: 61 ANGKYSAENLKL 72
                A NL +
Sbjct: 58 KGKGPKAVNLVI 69


>gi|240948086|ref|ZP_04752496.1| cold shock-like protein CspC [Actinobacillus minor NM305]
 gi|257465091|ref|ZP_05629462.1| cold shock-like protein CspC [Actinobacillus minor 202]
 gi|240297566|gb|EER48058.1| cold shock-like protein CspC [Actinobacillus minor NM305]
 gi|257450751|gb|EEV24794.1| cold shock-like protein CspC [Actinobacillus minor 202]
          Length = 70

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62
           G++KW+N  KG+GFI P+   + G+D+F+H SA+ S  G   L EG  V ++   +D  
Sbjct: 5  TGTVKWFNATKGFGFIAPD---QGGEDIFVHFSAIESNGGYRTLEEGAKVEFEVQASDRG 61

Query: 63 GKYSAENLKLV 73
             SA N+K +
Sbjct: 62 --ASAANVKKI 70


>gi|86360861|ref|YP_472748.1| putative cold shock protein [Rhizobium etli CFN 42]
 gi|86284963|gb|ABC94021.1| putative cold shock protein [Rhizobium etli CFN 42]
          Length = 69

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   +   DVF+H SAV  AG+ ++ EGQ + +    +  
Sbjct: 1  MTIGTVKWFNSTKGFGFIQPD---DGSADVFVHISAVERAGMSSIAEGQKLGFQLEHDRK 57

Query: 62 NGKYSAENLK 71
          +GK SA  L+
Sbjct: 58 SGKMSAGQLQ 67


>gi|54293420|ref|YP_125835.1| hypothetical protein lpl0469 [Legionella pneumophila str. Lens]
 gi|53753252|emb|CAH14699.1| hypothetical protein lpl0469 [Legionella pneumophila str. Lens]
          Length = 77

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N  KG+GFI PEG    G+D+F+H S++   G   L  GQ VTYD + N  
Sbjct: 1  MARGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLVPGQAVTYDVI-NGE 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G +++  + L   +  
Sbjct: 57 RGLHASNVIALSENAEQ 73


>gi|288575007|ref|ZP_06393364.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288570748|gb|EFC92305.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 65

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFIT    TE G+DVF+H SA+   G   L E  +V ++   N   G
Sbjct: 2  KGTVKWFNGTKGYGFIT----TEEGNDVFVHFSAIQMDGYKTLEENDVVEFEIT-NGEKG 56

Query: 64 KYSAENLK 71
            ++   +
Sbjct: 57 PQASNVTR 64


>gi|90023198|ref|YP_529025.1| cold-shock DNA-binding protein family protein [Saccharophagus
          degradans 2-40]
 gi|89952798|gb|ABD82813.1| cold-shock DNA-binding protein family [Saccharophagus degradans
          2-40]
          Length = 69

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      +SG DVF H SA+AS+G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNESKGFGFIEQ----KSGPDVFAHFSAIASSGFKTLAEGQQVEFTVTQGQKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -PQAENI 66


>gi|229016428|ref|ZP_04173370.1| Cold shock protein cspB [Bacillus cereus AH1273]
 gi|229022656|ref|ZP_04179181.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|228738665|gb|EEL89136.1| Cold shock protein cspB [Bacillus cereus AH1272]
 gi|228744836|gb|EEL94896.1| Cold shock protein cspB [Bacillus cereus AH1273]
          Length = 67

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++  + +
Sbjct: 1  MTVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFEIEEGN 56

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 57 -RGPQAKNVIKL 67


>gi|4454361|emb|CAA72659.1| cold shock protein, CSPA [Vibrio cholerae]
          Length = 70

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF+T +     G+DVF+H +++ S G   L EGQ V++  V+    G
Sbjct: 6  TGSVKWFNETKGFGFLTQD---NGGNDVFVHLNSIQSEGFKTLAEGQRVSF-IVEQGKKG 61

Query: 64 KYSAENLKL 72
            ++  + L
Sbjct: 62 PQASNVVAL 70


>gi|223932623|ref|ZP_03624623.1| cold-shock DNA-binding domain protein [Streptococcus suis
          89/1591]
 gi|302023415|ref|ZP_07248626.1| cold shock protein [Streptococcus suis 05HAS68]
 gi|330832233|ref|YP_004401058.1| cold-shock DNA-binding domain-containing protein [Streptococcus
          suis ST3]
 gi|223898733|gb|EEF65094.1| cold-shock DNA-binding domain protein [Streptococcus suis
          89/1591]
 gi|329306456|gb|AEB80872.1| cold-shock DNA-binding domain protein [Streptococcus suis ST3]
          Length = 67

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  E    +G DVF H S + S    +L EGQ VT++  Q   
Sbjct: 1  MVQGTVKWFNAEKGFGFIAQE----NGPDVFAHFSEIQSNSFKSLEEGQKVTFEVEQGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--LQATNITKI 66


>gi|320160229|ref|YP_004173453.1| cold shock protein [Anaerolinea thermophila UNI-1]
 gi|319994082|dbj|BAJ62853.1| cold shock protein [Anaerolinea thermophila UNI-1]
          Length = 69

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KGYGFI+ E    +G DVF+H SA+   G  +L EGQ V +  V+    G 
Sbjct: 7  GTVKWFNSEKGYGFISRE----NGPDVFVHYSAIEGNGYRSLNEGQTVEFK-VEKGPKGL 61

Query: 65 YSAEN 69
           +++ 
Sbjct: 62 QASQV 66


>gi|153854155|ref|ZP_01995463.1| hypothetical protein DORLON_01454 [Dorea longicatena DSM 13814]
 gi|149753204|gb|EDM63135.1| hypothetical protein DORLON_01454 [Dorea longicatena DSM 13814]
          Length = 65

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI    S   G DVF+H S +   G   L EGQ V Y+  +     
Sbjct: 2  KGTVKWFNNQKGYGFI----SDAEGHDVFVHYSGLNMEGFKTLEEGQEVEYEVTEGAKG- 56

Query: 64 KYSAENLKLV 73
             A N+  +
Sbjct: 57 -PQAVNVTPL 65


>gi|254752895|ref|ZP_05204931.1| cold shock protein CspB [Bacillus anthracis str. Vollum]
 gi|254759167|ref|ZP_05211193.1| cold shock protein CspB [Bacillus anthracis str. Australia 94]
          Length = 66

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ VT++  Q + 
Sbjct: 1  MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHXSAIQGEGFKTLEEGQEVTFEVEQGNR 56

Query: 62 NGKYSAENLK 71
            + +  N K
Sbjct: 57 GPQATNVNKK 66


>gi|227822300|ref|YP_002826271.1| putative cold shock protein CspA [Sinorhizobium fredii NGR234]
 gi|227341300|gb|ACP25518.1| putative cold shock protein CspA [Sinorhizobium fredii NGR234]
          Length = 70

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +K++N DKG+GFITP+G      DVF+H SAV +AGL  L +GQ V++D   + 
Sbjct: 1  MATKGIVKFFNQDKGFGFITPDG---GAKDVFVHISAVQAAGLATLKDGQQVSFDTEPDR 57

Query: 61 ANGKYSAENLKLV 73
                A NL+ +
Sbjct: 58 MGKGPKAVNLQAL 70


>gi|146281647|ref|YP_001171800.1| cold shock protein CapB [Pseudomonas stutzeri A1501]
 gi|145569852|gb|ABP78958.1| cold shock protein CapB [Pseudomonas stutzeri A1501]
 gi|327479894|gb|AEA83204.1| cold shock protein CapB [Pseudomonas stutzeri DSM 4166]
          Length = 69

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITP    +SGDD+F+H  A+   G  +L EGQ V++   +   
Sbjct: 4  RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFRAIQGDGFKSLKEGQQVSFVATRGQK 59

Query: 62 NGKYSAENLKLV 73
               AE ++++
Sbjct: 60 G--MQAEEVQVI 69


>gi|153821098|ref|ZP_01973765.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae B33]
 gi|153824664|ref|ZP_01977331.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2]
 gi|262190586|ref|ZP_06048826.1| cold shock protein CspA [Vibrio cholerae CT 5369-93]
 gi|126521472|gb|EAZ78695.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae B33]
 gi|149741620|gb|EDM55649.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2]
 gi|262033546|gb|EEY52044.1| cold shock protein CspA [Vibrio cholerae CT 5369-93]
 gi|327485910|gb|AEA80316.1| Cold shock protein CspA [Vibrio cholerae LMA3894-4]
          Length = 66

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF+T +     G+DVF+H +++ S G   L EGQ V++  V+    G
Sbjct: 2  TGSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLAEGQRVSF-IVEQGKKG 57

Query: 64 KYSAENLKL 72
            ++  + L
Sbjct: 58 PQASNVVAL 66


>gi|85711368|ref|ZP_01042427.1| Cold shock protein [Idiomarina baltica OS145]
 gi|85694869|gb|EAQ32808.1| Cold shock protein [Idiomarina baltica OS145]
          Length = 69

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      + G DVF H SA+   G   L EGQ V++   Q     
Sbjct: 6  NGTVKWFNEAKGFGFIEQ----QGGADVFAHFSAITGDGFKTLNEGQRVSFAITQGPKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -PQAENI 66


>gi|124267389|ref|YP_001021393.1| cold-shock DNA-binding protein family protein [Methylibium
          petroleiphilum PM1]
 gi|124260164|gb|ABM95158.1| cold-shock DNA-binding protein family [Methylibium petroleiphilum
          PM1]
          Length = 69

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW+N  KG+GFI  +G    G DVF H   +   G   L E Q V ++  Q   
Sbjct: 3  VQTGTVKWFNEAKGFGFIAQDG---GGADVFAHFRDIQGNGFKTLQENQRVEFEVKQGQK 59

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 60 G--PQAANIRPL 69


>gi|254488402|ref|ZP_05101607.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
          GAI101]
 gi|214045271|gb|EEB85909.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp.
          GAI101]
          Length = 68

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+ PEG      DVF+H SAV  AGL  L++ Q +T+D  ++  
Sbjct: 1  MATGTVKWFNSTKGFGFVAPEG---GSKDVFVHISAVEQAGLTGLSDDQKITFDI-ESGR 56

Query: 62 NGKYSAENLKL 72
          +G+ SA N+KL
Sbjct: 57 DGRESATNIKL 67


>gi|153837326|ref|ZP_01989993.1| cold shock domain protein CspD [Vibrio parahaemolyticus AQ3810]
 gi|260365334|ref|ZP_05777885.1| cold shock domain protein CspD [Vibrio parahaemolyticus K5030]
 gi|260876950|ref|ZP_05889305.1| cold shock domain protein CspD [Vibrio parahaemolyticus AN-5034]
 gi|260897909|ref|ZP_05906405.1| cold shock domain protein CspD [Vibrio parahaemolyticus Peru-466]
 gi|260901418|ref|ZP_05909813.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037]
 gi|149749357|gb|EDM60130.1| cold shock domain protein CspD [Vibrio parahaemolyticus AQ3810]
 gi|308085479|gb|EFO35174.1| cold shock domain protein CspD [Vibrio parahaemolyticus Peru-466]
 gi|308093637|gb|EFO43332.1| cold shock domain protein CspD [Vibrio parahaemolyticus AN-5034]
 gi|308107511|gb|EFO45051.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308112690|gb|EFO50230.1| cold shock domain protein CspD [Vibrio parahaemolyticus K5030]
 gi|328473238|gb|EGF44086.1| cold shock-like protein CspD [Vibrio parahaemolyticus 10329]
          Length = 72

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +   E   D+F H S +   G   L  GQ V+Y+  +   
Sbjct: 1  MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYEI-EKGP 56

Query: 62 NGKYSAENLKLVPKS 76
           G +++  + +  ++
Sbjct: 57 KGCHASSVVPIEAQA 71


>gi|94968921|ref|YP_590969.1| cold-shock DNA-binding protein family protein [Candidatus
          Koribacter versatilis Ellin345]
 gi|94550971|gb|ABF40895.1| cold-shock DNA-binding protein family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 66

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI    S ++G+DVF+H +A+ + G  +L EGQ V ++ V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFI----SRQNGEDVFVHHTAIQAQGFRSLQEGQAVQFNVVKGPK 56

Query: 62 NGKYSAENLKLV 73
             + AEN++ +
Sbjct: 57 G--WQAENVQAL 66


>gi|127512543|ref|YP_001093740.1| cold-shock DNA-binding domain-containing protein [Shewanella
          loihica PV-4]
 gi|126637838|gb|ABO23481.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4]
          Length = 68

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI  E    SG DVF+H  A+ S G   L EGQ V +   Q     
Sbjct: 5  TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 60 -PQAENVTVI 68


>gi|83746258|ref|ZP_00943311.1| Cold shock protein [Ralstonia solanacearum UW551]
 gi|207742557|ref|YP_002258949.1| cold shock-like protein cspd [Ralstonia solanacearum IPO1609]
 gi|83727008|gb|EAP74133.1| Cold shock protein [Ralstonia solanacearum UW551]
 gi|206593950|emb|CAQ60877.1| cold shock-like protein cspd [Ralstonia solanacearum IPO1609]
          Length = 67

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+ +   E G+++F H SA+   G   L EGQ V ++  Q   
Sbjct: 1  MASGTVKWFNDAKGFGFISLD---EGGEELFAHFSAIQMNGFKTLKEGQRVVFEVTQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQATNIQ 65


>gi|239994277|ref|ZP_04714801.1| stress response protein CspD [Alteromonas macleodii ATCC 27126]
          Length = 72

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI PE   + G+D+F H S +   G  +L  GQ VT++  Q   
Sbjct: 1  MAVGKVKWFNNAKGFGFIVPE---DGGEDIFAHYSTIQMEGYRSLKAGQEVTFEVQQGPK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--LHAENI 64


>gi|326386099|ref|ZP_08207723.1| cold-shock DNA-binding protein family protein [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326209324|gb|EGD60117.1| cold-shock DNA-binding protein family protein [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 80

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKG+GFI P+   E GDD F+H SAV  +G+  L + Q V Y+  + D 
Sbjct: 13 MAIGTVKFFNTDKGFGFIAPD---EGGDDSFVHISAVERSGMRTLLKDQRVKYEL-ETDK 68

Query: 62 NGKYSAENLKLV 73
           GK +A NL++V
Sbjct: 69 RGKTAAVNLEIV 80


>gi|299138232|ref|ZP_07031411.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX8]
 gi|298599478|gb|EFI55637.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX8]
          Length = 66

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GF+    S  +GDDVF+H +A+ S G  +L EGQ V ++ V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFL----SRANGDDVFVHHTAIQSNGFRSLQEGQSVQFNVVKGPK 56

Query: 62 NGKYSAENLKLV 73
             + AEN+++V
Sbjct: 57 G--WQAENVQVV 66


>gi|256391097|ref|YP_003112661.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256357323|gb|ACU70820.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 67

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  +G    G DVF+H SA++ +G  NL E Q V ++  Q   
Sbjct: 1  MATGKVKWFNGEKGFGFIEQDG---GGPDVFVHFSAISGSGYRNLEENQAVEFNVTQGPK 57

Query: 62 NGKYSAENLK 71
               AE+++
Sbjct: 58 G--PQAEDVR 65


>gi|171777642|ref|ZP_02919307.1| hypothetical protein STRINF_00142 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171283170|gb|EDT48594.1| hypothetical protein STRINF_00142 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 67

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+ E    SG DVF H S + S G  +L +GQ V ++  Q   
Sbjct: 1  MVQGTVKWFNAEKGFGFISQE----SGPDVFAHFSEIQSNGFKSLEDGQKVNFEVEQGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--LQATNITKI 66


>gi|119944526|ref|YP_942206.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119863130|gb|ABM02607.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 68

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF H SA++S G   LTEGQ V +   Q     
Sbjct: 5  TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAISSTGFKTLTEGQKVQFTVTQGQKG- 59

Query: 64 KYSAENL 70
             AEN+
Sbjct: 60 -PQAENI 65


>gi|303233532|ref|ZP_07320194.1| cold shock protein CspA [Finegoldia magna BVS033A4]
 gi|302495370|gb|EFL55114.1| cold shock protein CspA [Finegoldia magna BVS033A4]
          Length = 66

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT     E   D+F+H+SA+   G   L EGQ V+YD   +D 
Sbjct: 1  MSNGTVKWFNSTKGFGFIT----GEDNKDIFVHQSAIQEDGFRTLEEGQKVSYDVEASD- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 KGDRAVNVVKL 66


>gi|226365143|ref|YP_002782926.1| cold shock protein [Rhodococcus opacus B4]
 gi|226243633|dbj|BAH53981.1| cold shock protein [Rhodococcus opacus B4]
          Length = 67

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI PE   +   DVF+H S + S G   L E Q V+++  Q + 
Sbjct: 1  MAEGIVKWFNSEKGFGFIAPE---DGSADVFVHYSEIQSGGFRTLEENQRVSFEIGQGNK 57

Query: 62 NGKYSAENLKLV 73
               A  + ++
Sbjct: 58 G--PQATGVSVI 67


>gi|115522947|ref|YP_779858.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris BisA53]
 gi|115516894|gb|ABJ04878.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisA53]
          Length = 70

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL +L EGQ ++++   + 
Sbjct: 1  MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLIEGQRISFEVEPDK 57

Query: 61 ANGKYSAENLKL 72
                A NL +
Sbjct: 58 KGKGPKAVNLVI 69


>gi|198282878|ref|YP_002219199.1| cold-shock DNA-binding domain-containing protein
          [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666777|ref|YP_002425079.1| cold-shock protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247399|gb|ACH82992.1| cold-shock DNA-binding domain protein [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218518990|gb|ACK79576.1| cold-shock protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 67

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITPE   +  +DVF+H SA+   G   L EG+ V ++  +   
Sbjct: 1  MAVGTVKWFNDSKGFGFITPE---DGKEDVFVHHSAIEGTGFKTLAEGERVNFEVTRGPK 57

Query: 62 NGKYSAENLK 71
               AE ++
Sbjct: 58 G--LQAEKVR 65


>gi|257790734|ref|YP_003181340.1| cold-shock DNA-binding domain-containing protein [Eggerthella
          lenta DSM 2243]
 gi|257474631|gb|ACV54951.1| cold-shock DNA-binding domain protein [Eggerthella lenta DSM
          2243]
          Length = 67

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+NP+KGYGFI+     + G+D+F+H S +   G   L EG  V +D      
Sbjct: 1  MAEGTVKWFNPEKGYGFISQ----KDGEDLFVHFSEIKMDGFKTLDEGSAVQFDVT-TGQ 55

Query: 62 NGKYSAENLK 71
          NGK  A N+ 
Sbjct: 56 NGKLQASNVT 65


>gi|187250904|ref|YP_001875386.1| cold-shock DNA-binding domain-containing protein [Elusimicrobium
          minutum Pei191]
 gi|186971064|gb|ACC98049.1| Cold-shock DNA-binding domain protein [Elusimicrobium minutum
          Pei191]
          Length = 66

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KGYGF+TPE   +   D+F+H   +   G   L+EGQ V +D V++D 
Sbjct: 1  MAKGKVKWFNDQKGYGFVTPE---DGSKDLFVHYQEIKGEGFKTLSEGQEVEFDIVESDK 57

Query: 62 NGKYSAENLK 71
            K  A N++
Sbjct: 58 GPK--AVNVR 65


>gi|163737381|ref|ZP_02144798.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
          BS107]
 gi|163740951|ref|ZP_02148344.1| cold shock family protein [Phaeobacter gallaeciensis 2.10]
 gi|161385942|gb|EDQ10318.1| cold shock family protein [Phaeobacter gallaeciensis 2.10]
 gi|161388907|gb|EDQ13259.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis
          BS107]
          Length = 68

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PEG    G DVF+H S V  +GL  L + Q V ++  +   
Sbjct: 1  MASGTVKWFNTTKGYGFIEPEG---GGKDVFVHISQVERSGLTGLADNQKVDFEMTEG-R 56

Query: 62 NGKYSAENLK 71
          +G+  A +++
Sbjct: 57 DGRQMASDIR 66


>gi|116627693|ref|YP_820312.1| cold shock protein [Streptococcus thermophilus LMD-9]
 gi|116100970|gb|ABJ66116.1| cold-shock DNA-binding protein family [Streptococcus thermophilus
          LMD-9]
 gi|312278226|gb|ADQ62883.1| Cold shock-like protein cspE [Streptococcus thermophilus ND03]
          Length = 66

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT    +E G D+F H S++ S G  +L E Q V +D      
Sbjct: 1  MANGTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFDVEVGQR 56

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 57 G--PQAVNIT 64


>gi|209695649|ref|YP_002263578.1| cold shock-like protein CspD [Aliivibrio salmonicida LFI1238]
 gi|208009601|emb|CAQ79897.1| cold shock-like protein CspD [Aliivibrio salmonicida LFI1238]
          Length = 73

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      D+F H S +   G   L  GQ VTY+  +   
Sbjct: 1  MAIGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIEMDGYRTLKAGQAVTYEIHEGPK 57

Query: 62 NGKYSAENLKLVPKSS 77
             Y A  +K +   +
Sbjct: 58 G--YHASEIKPLEGEA 71


>gi|254448335|ref|ZP_05061796.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium
          HTCC5015]
 gi|198261948|gb|EDY86232.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium
          HTCC5015]
          Length = 69

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFI  E     G DVF+H SA+   G  +L EGQ V+++        
Sbjct: 6  NGTVKWFNDDKGFGFIQQE----GGPDVFVHFSAINGTGRRSLAEGQAVSFEITDGQKG- 60

Query: 64 KYSAENLK 71
             A N+ 
Sbjct: 61 -PQASNVT 67


>gi|192359729|ref|YP_001980822.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107]
 gi|190685894|gb|ACE83572.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107]
          Length = 75

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKGYGFI  E     G DVF+H  A+   G   L EGQ VT++  Q      
Sbjct: 13 GVVKWFNDDKGYGFIERE----GGADVFVHFRAINGTGRRTLKEGQKVTFEVTQGQKG-- 66

Query: 65 YSAENLKLV 73
            AEN+  +
Sbjct: 67 PQAENVTPL 75


>gi|190575103|ref|YP_001972948.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
 gi|190013025|emb|CAQ46657.1| putative cold shock protein [Stenotrophomonas maltophilia K279a]
          Length = 69

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFI+ E    +G+DVF+H  A+ + G  +L EGQ VT+  VQ   
Sbjct: 4  RETGTVKWFNDAKGFGFISRE----NGEDVFVHFRAIQTQGFKSLKEGQKVTFTVVQGQK 59

Query: 62 NGKYSAE 68
            +  A 
Sbjct: 60 GLQADAV 66


>gi|63148792|gb|AAY34518.1| cold shock protein [Bacillus thuringiensis serovar tolworthi]
          Length = 61

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  E     G+DVF+H SA+   G   L EGQ VT++  Q +  G 
Sbjct: 1  GIVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN-RGP 55

Query: 65 YSAEN 69
           +A  
Sbjct: 56 PAANV 60


>gi|330447207|ref|ZP_08310857.1| cold shock protein CspG [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328491398|dbj|GAA05354.1| cold shock protein CspG [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 70

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GF+T       G DVF+H  A+AS G   LTEGQ V++D  Q    G 
Sbjct: 7  GLVKWFNEEKGFGFLTQ---NNGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQGQ-KGL 62

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 63 QAANVVSL 70


>gi|209693681|ref|YP_002261609.1| cold shock protein [Aliivibrio salmonicida LFI1238]
 gi|208007632|emb|CAQ77736.1| cold shock protein [Aliivibrio salmonicida LFI1238]
          Length = 69

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 5  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLKEGQKVSFEVEQGQ-KG 60

Query: 64 KYSAENL 70
            ++  +
Sbjct: 61 PQASNVV 67


>gi|39995317|ref|NP_951268.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA]
 gi|39982079|gb|AAR33541.1| cold-shock domain family protein [Geobacter sulfurreducens PCA]
 gi|298504323|gb|ADI83046.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
          KN400]
          Length = 66

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  E    +G+DVF+H SA+   G  +L EG  VT++  +   
Sbjct: 1  MVNGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAINGNGFKSLAEGDRVTFEVTKG-P 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGLQAANVTRI 66


>gi|330819166|ref|YP_004348028.1| cold-shock DNA-binding domain protein [Burkholderia gladioli
          BSR3]
 gi|327371161|gb|AEA62516.1| cold-shock DNA-binding domain protein [Burkholderia gladioli
          BSR3]
          Length = 67

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+     GDD+F H S V+  G   L E Q V+++  +   
Sbjct: 1  MDTGIVKWFNDSKGFGFITPD---NGGDDLFAHFSEVSGDGFKTLAENQKVSFETKRGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 58 G--MQAANIKPL 67


>gi|219881898|gb|ACL52164.1| cold response protein 1 [Metarhizium anisopliae]
 gi|322693450|gb|EFY85310.1| cold response protein 1 [Metarhizium acridum CQMa 102]
 gi|322707280|gb|EFY98859.1| cold response protein 1 [Metarhizium anisopliae ARSEF 23]
          Length = 70

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N +KGYGFITPE    SG D+F+H  A+  +G  +L EGQ VT++ VQ   
Sbjct: 4  RQNGVVKWFNEEKGYGFITPE----SGPDLFVHFRAIEGSGFRSLKEGQAVTFEAVQGQK 59

Query: 62 NGKYSAENLKL 72
               A+ +++
Sbjct: 60 G--MQADKVQV 68


>gi|156973854|ref|YP_001444761.1| hypothetical protein VIBHAR_01564 [Vibrio harveyi ATCC BAA-1116]
 gi|156525448|gb|ABU70534.1| hypothetical protein VIBHAR_01564 [Vibrio harveyi ATCC BAA-1116]
          Length = 79

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +   E   D+F H S +   G   L  GQ V+Y+  +   
Sbjct: 8  MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYEI-EKGP 63

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 64 KGSHASSVVPI 74


>gi|302557419|ref|ZP_07309761.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
 gi|302475037|gb|EFL38130.1| conserved domain-containing protein [Streptomyces griseoflavus
          Tu4000]
          Length = 67

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A  G   L EGQ VT+D  Q   
Sbjct: 1  MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAGQGFRELLEGQKVTFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|302873916|ref|YP_003842549.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307689837|ref|ZP_07632283.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302576773|gb|ADL50785.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans
          743B]
          Length = 65

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFIT     E G DVF H S + S G  +L E Q V+Y+ V      
Sbjct: 2  NGTVKWFNAQKGFGFIT----GEDGKDVFAHFSKINSDGYKSLEENQKVSYEVVDGQKG- 56

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 57 -PQAENITII 65


>gi|330940302|gb|EGH43422.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 91

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  EG+ E   D+F H SA+   G   L  GQ V ++ VQ   
Sbjct: 1  MIEGKVKWFNNAKGFGFINAEGNDE---DLFAHFSAIEMDGYKTLKAGQKVRFEVVQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|157962306|ref|YP_001502340.1| cold-shock DNA-binding domain-containing protein [Shewanella
          pealeana ATCC 700345]
 gi|167623727|ref|YP_001674021.1| cold-shock DNA-binding domain-containing protein [Shewanella
          halifaxensis HAW-EB4]
 gi|170726405|ref|YP_001760431.1| cold-shock DNA-binding domain-containing protein [Shewanella
          woodyi ATCC 51908]
 gi|212635812|ref|YP_002312337.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3]
 gi|157847306|gb|ABV87805.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
          700345]
 gi|167353749|gb|ABZ76362.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis
          HAW-EB4]
 gi|169811752|gb|ACA86336.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
          51908]
 gi|212557296|gb|ACJ29750.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3]
          Length = 68

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI  E    SG DVF+H  A+ S G   L EGQ V +   Q     
Sbjct: 5  TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+ +V
Sbjct: 60 -PQAENVTVV 68


>gi|59713168|ref|YP_205944.1| cold shock protein [Vibrio fischeri ES114]
 gi|197334115|ref|YP_002157348.1| cold-shock' DNA-binding domain, putative [Vibrio fischeri MJ11]
 gi|59481269|gb|AAW87056.1| cold shock protein [Vibrio fischeri ES114]
 gi|197315605|gb|ACH65052.1| cold-shock' DNA-binding domain, putative [Vibrio fischeri MJ11]
          Length = 69

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+A+ G   L EGQ VT+   Q    G
Sbjct: 5  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIATEGFKTLKEGQAVTFTVEQGQ-KG 60

Query: 64 KYSAEN 69
            +A+ 
Sbjct: 61 PQAADV 66


>gi|51245724|ref|YP_065608.1| cold-shock protein (CspB) [Desulfotalea psychrophila LSv54]
 gi|50876761|emb|CAG36601.1| probable cold-shock protein (CspB) [Desulfotalea psychrophila
          LSv54]
          Length = 66

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  E     GDD+F+H +++ ++G   L EG  V+++  ++ A
Sbjct: 1  MAEGIVKWFNDAKGFGFIEQE----GGDDLFVHHTSINASGFKTLEEGARVSFEI-EDGA 55

Query: 62 NGKYSAENLKL 72
           G  +A    L
Sbjct: 56 KGPAAANVTAL 66


>gi|116254513|ref|YP_770349.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|115259161|emb|CAK10276.1| putative cold shock protein CspA [Rhizobium leguminosarum bv.
          viciae 3841]
          Length = 67

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKG+GFITPE     G DVF+H SA+   G  +L EG  VT++  Q+  
Sbjct: 1  MPTGTVKFFNDDKGFGFITPET---GGTDVFVHVSALQQGG--SLREGDKVTFEVGQDRK 55

Query: 62 NGKYSAENLKLV 73
           GK  AEN+ ++
Sbjct: 56 TGKSKAENVSVL 67


>gi|58038548|ref|YP_190512.1| putative transcriptional regulator cold shock protein
           [Gluconobacter oxydans 621H]
 gi|58000962|gb|AAW59856.1| Putative transcriptional regulator cold shock protein
           [Gluconobacter oxydans 621H]
          Length = 228

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG++KWYN  KG+GFITPE     G D+F+H SA+  +GL  L EGQ +    VQ    G
Sbjct: 164 RGTVKWYNATKGFGFITPES---GGKDIFVHASALERSGLPTLDEGQTINVKVVQGQ-KG 219

Query: 64  KYSAE 68
             +AE
Sbjct: 220 PEAAE 224



 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW+N +KG+GF+     ++   D+FLH +A+ +AG+ N+  G  V     Q    G+ 
Sbjct: 63  RVKWFNTEKGFGFVE---LSDGSGDIFLHANALTNAGVSNVNPGATVVVRIGQG-PKGRQ 118

Query: 66  SAENLKLVPKSSN 78
            AE L +   ++ 
Sbjct: 119 VAEVLSVDESTAE 131


>gi|330830980|ref|YP_004393932.1| Cold shock-like protein cspE [Aeromonas veronii B565]
 gi|328806116|gb|AEB51315.1| Cold shock-like protein cspE [Aeromonas veronii B565]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI        G DVF+H S++ S G   L EGQ V +   Q   
Sbjct: 4  IRTGQVKWFNETKGFGFIEQSQ----GPDVFVHFSSIQSTGFKTLAEGQKVQFTVTQGKK 59

Query: 62 NGKYSAENLKLV 73
               AEN+ LV
Sbjct: 60 G--PQAENVTLV 69


>gi|222054634|ref|YP_002536996.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
 gi|221563923|gb|ACM19895.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
          Length = 66

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI  +    +G+DVF+H SA+   G  +L EG+ V++D   N  
Sbjct: 1  MAQGKVKWFNDAKGFGFIEQD----NGEDVFVHFSAIVGEGFKSLAEGEAVSFDVT-NGP 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 KGLQAANVKKI 66


>gi|78485401|ref|YP_391326.1| cold-shock DNA-binding domain-containing protein [Thiomicrospira
          crunogena XCL-2]
 gi|78363687|gb|ABB41652.1| cold-shock DNA-binding protein family [Thiomicrospira crunogena
          XCL-2]
          Length = 68

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF H SA+ S+G   L EGQ V +    +   G
Sbjct: 5  TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAIVSSGFKTLAEGQKVEFTVT-DGPKG 59

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 60 PQAENIVAL 68


>gi|256391893|ref|YP_003113457.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256358119|gb|ACU71616.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 67

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+  +KG+GFI  +   + G DVF H S +++ G   L EGQ V ++  Q+  
Sbjct: 1  MTVGTVKWFKAEKGFGFIEQD---DGGPDVFAHFSNISAEGFRELLEGQRVEFEIAQSPK 57

Query: 62 NGKYSAENLKLV 73
               AEN++ +
Sbjct: 58 G--PHAENIRPI 67


>gi|116249427|ref|YP_765268.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|241113498|ref|YP_002973333.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|115254077|emb|CAK12474.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|240861706|gb|ACS59372.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 67

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKG+GFITPEG    G DVF+H SA+ S G  +L EG  V+++  Q+  
Sbjct: 1  MPTGTVKFFNDDKGFGFITPEG---GGQDVFVHVSALQSGG--SLREGDKVSFEVGQDRK 55

Query: 62 NGKYSAENLKLV 73
           GK  AEN+  +
Sbjct: 56 TGKSKAENVSTL 67


>gi|94269264|ref|ZP_01291414.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
 gi|93451280|gb|EAT02166.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
          Length = 66

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI  +    SG DVF+H +A+   G  +L EG  V ++ V    
Sbjct: 1  MAEGTVKWFNDAKGYGFIAQD----SGSDVFVHHTAIEGQGFKSLQEGARVEFEIVDGPK 56

Query: 62 NGKYSAENLK 71
              +A N++
Sbjct: 57 G--PAAGNVR 64


>gi|325923004|ref|ZP_08184708.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
          19865]
 gi|325546512|gb|EGD17662.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
          19865]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++ V
Sbjct: 60 G--MQADQVQAV 69


>gi|153954443|ref|YP_001395208.1| hypothetical protein CKL_1818 [Clostridium kluyveri DSM 555]
 gi|219855034|ref|YP_002472156.1| hypothetical protein CKR_1691 [Clostridium kluyveri NBRC 12016]
 gi|146347324|gb|EDK33860.1| Hypothetical protein CKL_1818 [Clostridium kluyveri DSM 555]
 gi|219568758|dbj|BAH06742.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 65

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT     E G+DVF H S + S G   L EGQ V++D  +     
Sbjct: 2  TGTVKWFNENKGFGFIT----GEDGNDVFAHFSQINSEGYKTLEEGQKVSFDKTRGQKG- 56

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 57 -PQAENITVL 65


>gi|28871287|ref|NP_793906.1| cold shock protein CapB [Pseudomonas syringae pv. tomato str.
          DC3000]
 gi|66047111|ref|YP_236952.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|70728640|ref|YP_258389.1| cold acclimation protein B-like protein [Pseudomonas fluorescens
          Pf-5]
 gi|71736780|ref|YP_273637.1| cold shock protein CapB [Pseudomonas syringae pv. phaseolicola
          1448A]
 gi|77457428|ref|YP_346933.1| cold-shock DNA-binding protein family protein [Pseudomonas
          fluorescens Pf0-1]
 gi|213970877|ref|ZP_03399000.1| cold acclimation protein B-related protein [Pseudomonas syringae
          pv. tomato T1]
 gi|229588835|ref|YP_002870954.1| cold shock protein [Pseudomonas fluorescens SBW25]
 gi|237798785|ref|ZP_04587246.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|257486637|ref|ZP_05640678.1| cold shock protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289626589|ref|ZP_06459543.1| cold shock protein [Pseudomonas syringae pv. aesculi str.
          NCPPB3681]
 gi|289647565|ref|ZP_06478908.1| cold shock protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289676765|ref|ZP_06497655.1| cold shock protein [Pseudomonas syringae pv. syringae FF5]
 gi|298488746|ref|ZP_07006775.1| Cold shock protein capB [Pseudomonas savastanoi pv. savastanoi
          NCPPB 3335]
 gi|301383772|ref|ZP_07232190.1| cold shock protein [Pseudomonas syringae pv. tomato Max13]
 gi|302059920|ref|ZP_07251461.1| cold shock protein [Pseudomonas syringae pv. tomato K40]
 gi|302184709|ref|ZP_07261382.1| cold shock protein [Pseudomonas syringae pv. syringae 642]
 gi|312959425|ref|ZP_07773942.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
 gi|330807866|ref|YP_004352328.1| transcription factor, Csd family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|60391849|sp|P0A105|CAPB_PSESM RecName: Full=Cold shock protein CapB; AltName: Full=Cold
          acclimation protein B
 gi|60391850|sp|P0A106|CAPB_PSEFR RecName: Full=Cold shock protein CapB; AltName: Full=C8.0;
          AltName: Full=Cold acclimation protein B
 gi|1513081|gb|AAC45997.1| cold acclimation protein B [Pseudomonas fragi]
 gi|28854537|gb|AAO57601.1| cold shock protein CapB [Pseudomonas syringae pv. tomato str.
          DC3000]
 gi|63257818|gb|AAY38914.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|68342939|gb|AAY90545.1| cold acclimation protein B-related protein [Pseudomonas
          fluorescens Pf-5]
 gi|71557333|gb|AAZ36544.1| cold shock protein CapB [Pseudomonas syringae pv. phaseolicola
          1448A]
 gi|77381431|gb|ABA72944.1| cold shock protein [Pseudomonas fluorescens Pf0-1]
 gi|213924400|gb|EEB57972.1| cold acclimation protein B-related protein [Pseudomonas syringae
          pv. tomato T1]
 gi|229360701|emb|CAY47559.1| cold shock protein [Pseudomonas fluorescens SBW25]
 gi|298156819|gb|EFH97910.1| Cold shock protein capB [Pseudomonas savastanoi pv. savastanoi
          NCPPB 3335]
 gi|311286142|gb|EFQ64706.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
 gi|320325639|gb|EFW81701.1| cold shock protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327078|gb|EFW83092.1| cold shock protein [Pseudomonas syringae pv. glycinea str. race
          4]
 gi|327375974|gb|AEA67324.1| putative Transcription factor, Csd family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
 gi|330889578|gb|EGH22239.1| cold shock protein [Pseudomonas syringae pv. mori str. 301020]
 gi|330898586|gb|EGH30005.1| cold shock protein [Pseudomonas syringae pv. japonica str.
          M301072PT]
 gi|330949989|gb|EGH50249.1| cold shock protein [Pseudomonas syringae Cit 7]
 gi|330973105|gb|EGH73171.1| cold shock protein [Pseudomonas syringae pv. aceris str.
          M302273PT]
 gi|331015681|gb|EGH95737.1| cold shock protein [Pseudomonas syringae pv. lachrymans str.
          M302278PT]
 gi|331021638|gb|EGI01695.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITP    +SGDD+F+H  A+ S G  +L EGQ V++   +   
Sbjct: 4  RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQK 59

Query: 62 NGKYSAENLKLV 73
               AE ++++
Sbjct: 60 G--MQAEEVQVI 69


>gi|89076141|ref|ZP_01162499.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
 gi|89048151|gb|EAR53735.1| putative Cold shock-like protein [Photobacterium sp. SKA34]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GFIT +     G DVF+H  A+   G   L EGQ V +D  Q    G
Sbjct: 5  TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVAFDIEQGQ-KG 60

Query: 64 KYSAEN 69
            +A  
Sbjct: 61 PQAANV 66


>gi|332524835|ref|ZP_08401026.1| cold-shock DNA-binding protein family protein [Rubrivivax
          benzoatilyticus JA2]
 gi|332108135|gb|EGJ09359.1| cold-shock DNA-binding protein family protein [Rubrivivax
          benzoatilyticus JA2]
          Length = 70

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G++KW+N  KG+GFI P+   + G D+F H   +  +G   L E Q V ++  Q    
Sbjct: 4  QTGTVKWFNEGKGFGFIAPD---DGGKDLFAHFKEIQGSGFKTLVENQRVEFEVTQGQKG 60

Query: 63 GKYS 66
           + S
Sbjct: 61 PQAS 64


>gi|109897864|ref|YP_661119.1| cold-shock DNA-binding domain-containing protein
          [Pseudoalteromonas atlantica T6c]
 gi|332307142|ref|YP_004434993.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|109700145|gb|ABG40065.1| cold-shock DNA-binding protein family [Pseudoalteromonas
          atlantica T6c]
 gi|332174471|gb|AEE23725.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 68

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H  A+   G   L EGQ V +   Q     
Sbjct: 5  TGTVKWFNESKGFGFIQQE----NGPDVFAHFRAITGTGFKTLAEGQKVEFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 60 -PQAENIVVL 68


>gi|134295036|ref|YP_001118771.1| cold-shock DNA-binding protein family protein [Burkholderia
          vietnamiensis G4]
 gi|134138193|gb|ABO53936.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis
          G4]
          Length = 67

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V+++ V+   
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMEGFKTLKENQRVSFE-VKVGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|163785451|ref|ZP_02180055.1| cold-shock domain family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879277|gb|EDP73177.1| cold-shock domain family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 76

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFIT +   ++  D+F+H SA+   G  NL EG+ V ++ VQ +  G
Sbjct: 12 TGTVKWFNSKKGFGFITRD---DNQGDIFVHYSAIEGEGFKNLEEGEKVEFEVVQEE-KG 67

Query: 64 KYSAENLKL 72
            + + +KL
Sbjct: 68 PRAQKVVKL 76


>gi|91805295|gb|ABE65379.1| CspC [Escherichia coli]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+ FITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFRFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 61 P-AAVNVTAI 69


>gi|77362000|ref|YP_341574.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125]
 gi|119470716|ref|ZP_01613384.1| Cold shock protein [Alteromonadales bacterium TW-7]
 gi|332533004|ref|ZP_08408874.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505]
 gi|76876911|emb|CAI89128.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125]
 gi|119446186|gb|EAW27464.1| Cold shock protein [Alteromonadales bacterium TW-7]
 gi|332037483|gb|EGI73936.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  E    +G DVF H SA+ S G   L EGQ V +   Q      
Sbjct: 7  GTVKWFNESKGFGFIEQE----NGPDVFAHFSAIKSEGFKTLAEGQRVEFTLSQGQKG-- 60

Query: 65 YSAENLKLV 73
            A+N+  V
Sbjct: 61 PQADNITAV 69


>gi|194292705|ref|YP_002008612.1| cold shock protein, transcription antiterminator [Cupriavidus
          taiwanensis LMG 19424]
 gi|193226609|emb|CAQ72560.1| cold shock protein, transcription antiterminator [Cupriavidus
          taiwanensis LMG 19424]
          Length = 67

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E G+D+F H SA+  +G  +L EGQ V Y       
Sbjct: 1  METGTVKWFNDAKGFGFITPD---EGGNDLFAHFSAIEGSGFKSLKEGQKVRY-VKAMGQ 56

Query: 62 NGKYS 66
           G+ +
Sbjct: 57 KGEQA 61


>gi|229526207|ref|ZP_04415611.1| cold shock protein CspG [Vibrio cholerae bv. albensis VL426]
 gi|229336365|gb|EEO01383.1| cold shock protein CspG [Vibrio cholerae bv. albensis VL426]
          Length = 70

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI+ +     G DVF+H  ++ S G   L EGQ V++   Q D  G
Sbjct: 6  TGSVKWFNETKGFGFISQD---NGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQ-DKKG 61

Query: 64 KYSAENLKL 72
            +A+   L
Sbjct: 62 PQAAQVTAL 70


>gi|189425683|ref|YP_001952860.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
 gi|189421942|gb|ACD96340.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
          Length = 66

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GF+  E     G+DVF+H SA+ S G  +L EG  V ++ V+   
Sbjct: 1  MTTGRVKWFNDSKGFGFLEQE----GGEDVFVHFSAINSNGFKSLAEGDTVEFEVVKG-P 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGLQAANVTRI 66


>gi|242239550|ref|YP_002987731.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
 gi|242131607|gb|ACS85909.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703]
          Length = 70

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP+       DVF+H SA+ S     L EGQ V +  +Q    G
Sbjct: 6  TGLVKWFDAGKGFGFITPD---NGSKDVFVHFSAIQSDDYKTLYEGQKVEF-VIQQGQKG 61

Query: 64 KYSAENLKLV 73
            +A N+ ++
Sbjct: 62 P-AAGNVTVL 70


>gi|126173707|ref|YP_001049856.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS155]
 gi|125996912|gb|ABN60987.1| cold-shock DNA-binding protein family [Shewanella baltica OS155]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P+     G D F+H  A+ S G   L EGQ V++D  Q     
Sbjct: 5  TGVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQGQKG- 60

Query: 64 KYSAENLKLV 73
             A N+ ++
Sbjct: 61 -PQAGNVVIL 69


>gi|307315884|ref|ZP_07595388.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307322018|ref|ZP_07601396.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306892307|gb|EFN23115.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306898474|gb|EFN29157.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 90

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++  DKG+GFITP+     G DVF+H SA+   G  +L +GQ V+Y+  Q+  
Sbjct: 24 MATGTVKFFAQDKGFGFITPDS---GGPDVFVHISALGFGG--SLQDGQKVSYELGQDRK 78

Query: 62 NGKYSAENLKLV 73
           GK  AEN+ ++
Sbjct: 79 TGKSKAENVSIL 90


>gi|254249432|ref|ZP_04942752.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
 gi|124875933|gb|EAY65923.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184]
          Length = 67

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFITP+     GDD+F H S +   G   L EGQ V+Y+  ++  
Sbjct: 1  MDTGTVKWFNDNKGFGFITPDS---GGDDLFAHFSEIRGDGFKMLAEGQKVSYE-TKHGP 56

Query: 62 NGKYSAENL 70
           G  ++  +
Sbjct: 57 KGLQASNIV 65


>gi|293402171|ref|ZP_06646309.1| cold shock protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304278|gb|EFE45529.1| cold shock protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 66

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N DKG+GFIT    ++ G+D+F+H + +   G   L EG  V++D   ND 
Sbjct: 1  MSTGKVKWFNADKGFGFIT----SDEGNDIFVHYTEIQGNGFRTLEEGAKVSFDIKTNDR 56

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 57 G--DHAANVNVL 66


>gi|225459483|ref|XP_002285837.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 228

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW++  KG+GFI P+   + G+D+F+H++++ S G   L+EG+ V +  V +  +G
Sbjct: 8  TGTVKWFSGQKGFGFIAPD---DGGEDLFVHQTSIRSDGFRTLSEGETVEF-AVDHGEDG 63

Query: 64 KYSAENLKLV 73
          +  A  +  V
Sbjct: 64 RTKAVEVTAV 73


>gi|168015213|ref|XP_001760145.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688525|gb|EDQ74901.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 187

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFITP+   + GDD+F+H++++ + G  +L EG++V +  V++  +
Sbjct: 14 ETGKVKWFNSSKGFGFITPD---KGGDDLFVHQTSIHAEGFRSLREGEVVEFQ-VESSED 69

Query: 63 GKYSAENLK 71
          G+  A  + 
Sbjct: 70 GRTKALAVT 78


>gi|323359207|ref|YP_004225603.1| cold shock proteins [Microbacterium testaceum StLB037]
 gi|323275578|dbj|BAJ75723.1| cold shock proteins [Microbacterium testaceum StLB037]
          Length = 67

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFIT       G DVF+H S +  +G   L EGQ V +       
Sbjct: 1  MTQGTVKWFNAEKGYGFIT----VTDGQDVFVHYSNIEMSGFRVLEEGQAVEFTVGSGQK 56

Query: 62 NGKYSAENLKLV 73
               AE+++L+
Sbjct: 57 G--PQAESVRLM 66


>gi|294633722|ref|ZP_06712280.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292830364|gb|EFF88715.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 67

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  EG    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MATGTVKWFNAEKGFGFIEQEG---GGADVFAHYSNIAAQGFRELLEGQKVNFDVAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|146282648|ref|YP_001172801.1| cold-shock protein CspD [Pseudomonas stutzeri A1501]
 gi|145570853|gb|ABP79959.1| cold-shock protein CspD [Pseudomonas stutzeri A1501]
          Length = 93

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G  E   D+F H SA+   G   L  GQ V ++ +Q   
Sbjct: 7  MLSGKVKWFNNAKGYGFIVADGGDE---DLFAHYSAIQMEGYRTLKAGQAVMFNILQGPK 63

Query: 62 N------GKYSAENLKLVPKSSN 78
                     A +    P ++ 
Sbjct: 64 GLHATDIRPQQAVSEATTPAAAQ 86


>gi|91223643|ref|ZP_01258908.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
 gi|91191729|gb|EAS77993.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
          Length = 70

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP+     G D+F+H  ++ S G   L+EGQ V++   Q +   
Sbjct: 6  TGLVKWFNESKGFGFITPD---NGGSDLFVHFKSIVSDGFKTLSEGQKVSFVVEQGNKG- 61

Query: 64 KYSAENLKLV 73
             A+N+ LV
Sbjct: 62 -PQADNVTLV 70


>gi|56807801|ref|ZP_00365651.1| COG1278: Cold shock proteins [Streptococcus pyogenes M49 591]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI+    TE+G DVF H SA+ + G   L EGQ V     +   
Sbjct: 3  MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQANGSKTLEEGQKVALSVEEGQR 58

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 59 G--PQAVNITKL 68


>gi|330954575|gb|EGH54835.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7]
          Length = 92

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  EG ++  +D+F+H SA+   G   L  GQ V ++      
Sbjct: 1  MIEGKVKWFNNAKGFGFINAEGKSD--EDLFVHFSAIEMEGYKTLKAGQKVRFEVAHGPK 58

Query: 62 N 62
           
Sbjct: 59 G 59


>gi|302185011|ref|ZP_07261684.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae 642]
          Length = 92

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  EG ++  +D+F+H SA+   G   L  GQ V ++      
Sbjct: 1  MIEGKVKWFNNAKGFGFINAEGKSD--EDLFVHFSAIEMDGYKTLKAGQKVRFEVAHGPK 58

Query: 62 NGKYSAENLKLVPKS 76
            +    N   VPK 
Sbjct: 59 GLQAIKINGSDVPKQ 73


>gi|261212974|ref|ZP_05927258.1| cold shock protein CspA [Vibrio sp. RC341]
 gi|260838039|gb|EEX64716.1| cold shock protein CspA [Vibrio sp. RC341]
          Length = 66

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF+T +     G+DVF+H +++ S G   LTEGQ V++   Q    G
Sbjct: 2  TGSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLTEGQRVSFTVEQG-KKG 57

Query: 64 KYSAENLKL 72
            ++  + L
Sbjct: 58 PQASNVVTL 66


>gi|149192133|ref|ZP_01870355.1| cold shock-like protein CspD [Vibrio shilonii AK1]
 gi|148834036|gb|EDL51051.1| cold shock-like protein CspD [Vibrio shilonii AK1]
          Length = 73

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI PEG      D+F H S +   G   L  GQ V Y+  +   
Sbjct: 1  MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIKMDGYRTLKAGQQVNYEVEEGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|332295605|ref|YP_004437528.1| cold-shock DNA-binding domain protein [Thermodesulfobium
          narugense DSM 14796]
 gi|332178708|gb|AEE14397.1| cold-shock DNA-binding domain protein [Thermodesulfobium
          narugense DSM 14796]
          Length = 68

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KGYGFI+ +   +   DVF+H SA+   G   L +GQ V ++ V +  
Sbjct: 1  MFLGKVKWFNNEKGYGFISKD---DGSGDVFVHYSAIQGKGFRTLEQGQAVQFEIV-DGP 56

Query: 62 NGKYSAENLKL 72
           G  ++   K+
Sbjct: 57 KGPQASNVTKV 67


>gi|224078196|ref|XP_002305502.1| predicted protein [Populus trichocarpa]
 gi|222848466|gb|EEE86013.1| predicted protein [Populus trichocarpa]
          Length = 207

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW++  KG+GFI+P+   +  DD+F+H+S++ S G  +L +G+ V +  ++N  
Sbjct: 4  RQTGKVKWFSDQKGFGFISPD---DGSDDLFVHQSSIKSEGYRSLGDGEEVEF-VIENSD 59

Query: 62 NGKYSAENLK 71
          +G+  A ++ 
Sbjct: 60 DGRTKAVDVT 69


>gi|167035306|ref|YP_001670537.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida GB-1]
 gi|170720314|ref|YP_001748002.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida W619]
 gi|166861794|gb|ABZ00202.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
 gi|169758317|gb|ACA71633.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KGYGFITP    +SGDD+F+H  A+ + G   L EGQ VT+   +   
Sbjct: 4  RQNGTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQADGFKTLKEGQAVTFVATRGQK 59

Query: 62 NGKYSAENLKL 72
               AE +++
Sbjct: 60 G--MQAEEVQI 68


>gi|257057657|ref|YP_003135489.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
 gi|256587529|gb|ACU98662.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
          Length = 67

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +G      DVF+H S +   G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAQDGGE---GDVFVHYSEIEGRGFRTLEENQRVEFEVGQGQK 57

Query: 62 NGKYS 66
            +  
Sbjct: 58 GPQAQ 62


>gi|222106593|ref|YP_002547384.1| cold shock protein [Agrobacterium vitis S4]
 gi|221737772|gb|ACM38668.1| cold shock protein [Agrobacterium vitis S4]
          Length = 70

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++K++N DKG+GFITPEG      DVF+H SA+ +AG+  L +GQ VT+D   + 
Sbjct: 1  MAIKGTVKFFNQDKGFGFITPEG---GAKDVFVHISALQAAGIQTLRDGQEVTFDTEADR 57

Query: 61 ANGKYSAENLK 71
                A N++
Sbjct: 58 MGKGPKAVNIR 68


>gi|152997616|ref|YP_001342451.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
          MWYL1]
 gi|150838540|gb|ABR72516.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
          MWYL1]
          Length = 70

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  E     G DVF+H  ++  +G   L EGQ VT++  Q      
Sbjct: 8  GIVKWFNDEKGFGFIERE----GGPDVFVHFRSINGSGRRTLQEGQKVTFEVTQGQKG-- 61

Query: 65 YSAENLKLV 73
            AEN+  V
Sbjct: 62 PQAENVTPV 70


>gi|169825043|ref|YP_001692654.1| cold shock protein [Finegoldia magna ATCC 29328]
 gi|302379354|ref|ZP_07267841.1| cold shock protein CspA [Finegoldia magna ACS-171-V-Col3]
 gi|167831848|dbj|BAG08764.1| cold shock protein [Finegoldia magna ATCC 29328]
 gi|302312699|gb|EFK94693.1| cold shock protein CspA [Finegoldia magna ACS-171-V-Col3]
          Length = 66

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFIT     E   D+F+H+SA+   G   L EGQ V+YD   +D 
Sbjct: 1  MSNGTVKWFNSTKGFGFIT----GEDNKDIFVHQSAIQEEGFRTLEEGQKVSYDVEASD- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 KGDRAVNVVKL 66


>gi|90581456|ref|ZP_01237250.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|90437317|gb|EAS62514.1| putative Cold shock-like protein [Vibrio angustum S14]
          Length = 70

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GF+T +     G DVF+H  A+AS G   LTEGQ V++D  Q    G 
Sbjct: 7  GLVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQGQ-KGL 62

Query: 65 YSAENLKL 72
           +A  + L
Sbjct: 63 QAANVVGL 70


>gi|21243129|ref|NP_642711.1| major cold shock protein [Xanthomonas axonopodis pv. citri str.
          306]
 gi|78048148|ref|YP_364323.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
 gi|325928087|ref|ZP_08189300.1| cold-shock DNA-binding protein family [Xanthomonas perforans
          91-118]
 gi|21108648|gb|AAM37247.1| major cold shock protein [Xanthomonas axonopodis pv. citri str.
          306]
 gi|78036578|emb|CAJ24269.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
 gi|325541585|gb|EGD13114.1| cold-shock DNA-binding protein family [Xanthomonas perforans
          91-118]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++ V
Sbjct: 60 G--MQADQVQAV 69


>gi|302519359|ref|ZP_07271701.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
 gi|318056421|ref|ZP_07975144.1| cold-shock protein [Streptomyces sp. SA3_actG]
 gi|318077529|ref|ZP_07984861.1| cold-shock protein [Streptomyces sp. SA3_actF]
 gi|302428254|gb|EFL00070.1| cold shock domain-containing protein CspD [Streptomyces sp.
          SPB78]
          Length = 67

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +++ G   L EGQ V +D  Q   
Sbjct: 1  MSSGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNISAQGFRELLEGQKVNFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|228924740|ref|ZP_04087911.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228834917|gb|EEM80385.1| Cold shock protein cspB [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 64

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          + +G++KW+N +KG+GFI  E     GDDVF+H SA+   G   L EGQ VT+D  
Sbjct: 1  MEKGNVKWFNGEKGFGFIERE----GGDDVFVHFSAIQGEGYKTLEEGQAVTFDLE 52


>gi|298717348|ref|YP_003729990.1| cold shock-like protein cspI [Pantoea vagans C9-1]
 gi|304395197|ref|ZP_07377081.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|304395198|ref|ZP_07377082.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|298361537|gb|ADI78318.1| Cold shock-like protein cspI [Pantoea vagans C9-1]
 gi|304357450|gb|EFM21813.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|304357451|gb|EFM21814.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
          Length = 70

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFDAGKGFGFISP---QDGSKDVFVHFSAIQSNDYKTLDEGQQVEFTI-ENGAKG 61

Query: 64 KYSAENL 70
            +A  +
Sbjct: 62 PSAANVV 68


>gi|15839211|ref|NP_299899.1| temperature acclimation protein B [Xylella fastidiosa 9a5c]
 gi|9107847|gb|AAF85419.1|AE004068_15 temperature acclimation protein B [Xylella fastidiosa 9a5c]
          Length = 85

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFIT    + +G D+F+H  A+   G  +L EGQ V++  VQ   
Sbjct: 20 RQIGTVKWFNDNKGFGFIT----SNNGPDLFVHYRAIQGNGFKSLQEGQKVSFVAVQGQK 75

Query: 62 NGKYSAENLKLV 73
               A+ ++++
Sbjct: 76 G--MQADQVQVL 85


>gi|16760938|ref|NP_456555.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. CT18]
 gi|29141370|ref|NP_804712.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
 gi|213053459|ref|ZP_03346337.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E00-7866]
 gi|213421410|ref|ZP_03354476.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E01-6750]
 gi|213424976|ref|ZP_03357726.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E02-1180]
 gi|213580718|ref|ZP_03362544.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-0664]
 gi|213864720|ref|ZP_03386839.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. M223]
 gi|289811876|ref|ZP_06542505.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
 gi|289829487|ref|ZP_06547099.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-3139]
 gi|20137745|sp|P58726|CSPJ_SALTI RecName: Full=Cold shock-like protein CspJ
 gi|25296117|pir||AD0755 cold shock protein [imported] - Salmonella enterica subsp.
          enterica serovar Typhi (strain CT18)
 gi|16503235|emb|CAD05743.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi]
 gi|29136997|gb|AAO68561.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
          Length = 70

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+NP+KG+GFITP    +   DVF+H SA+ S     L E Q V +   Q    G
Sbjct: 6  TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQG-PKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVVAL 70


>gi|317471073|ref|ZP_07930446.1| cold-shock DNA-binding domain-containing protein [Anaerostipes
          sp. 3_2_56FAA]
 gi|316901441|gb|EFV23382.1| cold-shock DNA-binding domain-containing protein [Anaerostipes
          sp. 3_2_56FAA]
          Length = 64

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFIT E +   G+DVF+H S +A+ G  +L +GQ VT++  Q +    
Sbjct: 1  GTVKWFNSTKGFGFITNEST---GEDVFVHFSGIAAEGFKSLEDGQKVTFETTQGNRG-- 55

Query: 65 YSAENL 70
            A N+
Sbjct: 56 LQAVNV 61


>gi|289152158|gb|ADC84009.1| cold shock-like protein [Escherichia coli]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G  +
Sbjct: 8  VKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKGP-A 62

Query: 67 AENLKLV 73
          A N+  +
Sbjct: 63 AVNVTAI 69


>gi|163785452|ref|ZP_02180056.1| cold-shock DNA-binding domain protein [Hydrogenivirga sp.
          128-5-R1-1]
 gi|159879278|gb|EDP73178.1| cold-shock DNA-binding domain protein [Hydrogenivirga sp.
          128-5-R1-1]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW++  KG+GFIT E   ++G+D+F+H SA+   G  NL EG+ V ++ VQ++
Sbjct: 1  MSTTGTVKWFDSKKGFGFITRE---DTGEDIFVHFSAINGQGFKNLEEGEKVEFEVVQDE 57

Query: 61 ANGKYSAENLK 71
            G  +A   K
Sbjct: 58 -KGFRAANVTK 67


>gi|149187264|ref|ZP_01865562.1| cold shock protein [Vibrio shilonii AK1]
 gi|148838800|gb|EDL55739.1| cold shock protein [Vibrio shilonii AK1]
          Length = 69

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          + G++KW+N +KGYGFI  E    +G DVF+H  A++  G   L EGQ V++   Q    
Sbjct: 5  NTGTVKWFNEEKGYGFIAQE----NGPDVFVHFRAISGEGFKTLKEGQAVSFGVEQGQKG 60

Query: 63 GKYSAENL 70
              A N+
Sbjct: 61 --PQAVNV 66


>gi|110634484|ref|YP_674692.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
          BNC1]
 gi|110285468|gb|ABG63527.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
          Length = 70

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N  KG+GFITP+   +   DVF+H SAV ++GL  L +GQ VT+D   + 
Sbjct: 1  MPQSGTVKFFNHAKGFGFITPD---DGQKDVFVHISAVQASGLPGLEDGQKVTFDTEPDK 57

Query: 61 ANGKYSAENLKL 72
                A NL +
Sbjct: 58 RGKGPKAVNLTI 69


>gi|91228780|ref|ZP_01262689.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
 gi|254228854|ref|ZP_04922276.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25]
 gi|262396796|ref|YP_003288649.1| cold shock transcriptional regulator CspA [Vibrio sp. Ex25]
 gi|269966724|ref|ZP_06180801.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          40B]
 gi|91187655|gb|EAS73978.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
 gi|151938531|gb|EDN57367.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25]
 gi|262340390|gb|ACY54184.1| cold shock transcriptional regulator CspA [Vibrio sp. Ex25]
 gi|269828647|gb|EEZ82904.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          40B]
          Length = 70

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI+ +     GDDVF+H  ++ S G   LTEGQ V++  V+    G
Sbjct: 6  TGSVKWFNETKGFGFISQD---NGGDDVFVHFRSIVSEGFKTLTEGQKVSF-VVEQGNKG 61

Query: 64 KYSAENLKL 72
            +AE   L
Sbjct: 62 LQAAEVTAL 70


>gi|325263738|ref|ZP_08130471.1| conserved domain protein [Clostridium sp. D5]
 gi|324030776|gb|EGB92058.1| conserved domain protein [Clostridium sp. D5]
          Length = 65

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFI+       G+DVF+H S +   G  +L EGQ V +D   + A G
Sbjct: 2  TGTVKWFNNQKGYGFIS----DSEGNDVFVHYSGLMMDGFKSLEEGQAVEFDVT-DGAKG 56

Query: 64 KYSAENLKL 72
            +    KL
Sbjct: 57 PQAVNVTKL 65


>gi|218902331|ref|YP_002450165.1| cold shock protein CspA [Bacillus cereus AH820]
 gi|218538225|gb|ACK90623.1| cold shock protein CspA [Bacillus cereus AH820]
          Length = 67

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+++  + +
Sbjct: 1  MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFEIEEGN 56

Query: 61 ANGKYSAENLKLV 73
                A+N+  +
Sbjct: 57 RG--PQAKNVXKL 67


>gi|15644617|ref|NP_229670.1| cold shock protein [Thermotoga maritima MSB8]
 gi|148270057|ref|YP_001244517.1| cold-shock DNA-binding domain-containing protein [Thermotoga
          petrophila RKU-1]
 gi|170288741|ref|YP_001738979.1| cold-shock DNA-binding domain-containing protein [Thermotoga sp.
          RQ2]
 gi|281412062|ref|YP_003346141.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
          RKU-10]
 gi|4982460|gb|AAD36936.1|AE001824_5 cold shock protein [Thermotoga maritima MSB8]
 gi|147735601|gb|ABQ46941.1| cold-shock DNA-binding protein family [Thermotoga petrophila
          RKU-1]
 gi|170176244|gb|ACB09296.1| cold-shock DNA-binding domain protein [Thermotoga sp. RQ2]
 gi|281373165|gb|ADA66727.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
          RKU-10]
          Length = 66

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW++  KGYGFIT     E+G+D+F+H SA+   G   L E + V ++  +     
Sbjct: 2  RGTVKWFDSKKGYGFIT----MENGEDIFVHWSAIQMDGFKTLRENETVEFEVQKGTKG- 56

Query: 64 KYSAENLKLV 73
             A N++ V
Sbjct: 57 -PQAVNVRPV 65


>gi|160880077|ref|YP_001559045.1| cold-shock DNA-binding domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160428743|gb|ABX42306.1| cold-shock DNA-binding domain protein [Clostridium
          phytofermentans ISDg]
          Length = 66

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI+     E G+DVF+H S +A  G   L +GQ VT++      
Sbjct: 1  MKKGTVKWFNSQKGFGFIS----DEQGNDVFVHYSGLAMDGFKTLEDGQSVTFEVTTGQR 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--LQAVNV 63


>gi|322434375|ref|YP_004216587.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321162102|gb|ADW67807.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 75

 Score = 94.6 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          ++G +KW+N  KG+GF+      E G DVF+H S++   G  +L EG  V +D +Q +  
Sbjct: 4  YKGEVKWFNNAKGFGFL----GREEGPDVFVHYSSIQLDGYKSLKEGDKVEFDVIQGEKG 59

Query: 63 GK 64
           +
Sbjct: 60 PQ 61


>gi|282863804|ref|ZP_06272862.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|282561505|gb|EFB67049.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
          Length = 67

 Score = 94.6 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELQEGQKVNFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|167586483|ref|ZP_02378871.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu]
          Length = 67

 Score = 94.6 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V++D V+   
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIKMDGFKTLKENQRVSFD-VKVGP 56

Query: 62 NGKYSAE 68
           GK +A 
Sbjct: 57 KGKQAAN 63


>gi|119775095|ref|YP_927835.1| cold-shock DNA-binding domain-containing protein [Shewanella
          amazonensis SB2B]
 gi|119767595|gb|ABM00166.1| cold-shock DNA-binding protein family [Shewanella amazonensis
          SB2B]
          Length = 70

 Score = 94.6 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          H G++KW+N +KG+GF++ +  +    DVF+H  A+ + G   L EGQ V++  V+    
Sbjct: 6  HTGTVKWFNDEKGFGFLSRDNDS----DVFVHYRAINTQGRRTLKEGQKVSFSLVEGQ-K 60

Query: 63 GKYSAENLKL 72
          G  +A    L
Sbjct: 61 GLLAANVTPL 70


>gi|90408760|ref|ZP_01216906.1| Cold shock protein [Psychromonas sp. CNPT3]
 gi|90310140|gb|EAS38279.1| Cold shock protein [Psychromonas sp. CNPT3]
          Length = 68

 Score = 94.6 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  E    +G DVF H SA+AS G   L EGQ V +   Q      
Sbjct: 6  GTVKWFNESKGFGFIEQE----NGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQGQKG-- 59

Query: 65 YSAENLKLV 73
           +AEN+  +
Sbjct: 60 PNAENIVAI 68


>gi|260905033|ref|ZP_05913355.1| cold-shock DNA-binding domain protein [Brevibacterium linens BL2]
          Length = 67

 Score = 94.6 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+   +   DVF H SA+ S G   L EGQ V +D      
Sbjct: 1  MATGTVKWFNSEKGFGFIQPD---DGSADVFTHFSAIESTGYRELAEGQNVEFDSEMGSK 57

Query: 62 NGKYSAENLKLV 73
               A +++ +
Sbjct: 58 G--LQATSVRPL 67


>gi|91229059|ref|ZP_01262885.1| cold shock-like protein CspD [Vibrio alginolyticus 12G01]
 gi|262394729|ref|YP_003286583.1| cold shock protein CspD [Vibrio sp. Ex25]
 gi|269967652|ref|ZP_06181702.1| cold shock-like protein CspD [Vibrio alginolyticus 40B]
 gi|91187452|gb|EAS73792.1| cold shock-like protein CspD [Vibrio alginolyticus 12G01]
 gi|262338323|gb|ACY52118.1| cold shock protein CspD [Vibrio sp. Ex25]
 gi|269827739|gb|EEZ82023.1| cold shock-like protein CspD [Vibrio alginolyticus 40B]
          Length = 72

 Score = 94.6 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +   E   D+F H S +   G   L  GQ V+Y+  +   
Sbjct: 1  MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYEI-EKGP 56

Query: 62 NGKYSAENLKL 72
           G +++  + L
Sbjct: 57 KGCHASSVVPL 67


>gi|322420109|ref|YP_004199332.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
          M18]
 gi|320126496|gb|ADW14056.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
          Length = 67

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI  +    +G+DVF+H SA+   G  +L EG+ V++D   N  
Sbjct: 1  MAQGKVKWFNDAKGFGFIEQD----NGEDVFVHFSAITGEGFKSLAEGESVSFDVT-NGP 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 KGLQAANVKKI 66


>gi|195648068|gb|ACG43502.1| glycine-rich protein 2b [Zea mays]
          Length = 208

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFITP+   +  +D+F+H+S++ S G  +L +G  V Y    +  +G 
Sbjct: 8  GTVKWFNGTKGFGFITPD---DGSEDLFVHQSSIKSDGYRSLNDGDAVEYTVG-SGNDGX 63

Query: 65 YSAENLK 71
            A ++ 
Sbjct: 64 AKALDVT 70


>gi|94311826|ref|YP_585036.1| cold-shock DNA-binding protein family protein [Cupriavidus
          metallidurans CH34]
 gi|93355678|gb|ABF09767.1| DNA-binding transcriptional repressor [Cupriavidus metallidurans
          CH34]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+   E    +F H SA+  +G   L EGQ V ++ VQ   
Sbjct: 1  MASGIVKWFNDAKGFGFIKPDDGEEE---LFAHFSAIQMSGFKTLKEGQRVVFEIVQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQATNIQ 65


>gi|126668437|ref|ZP_01739394.1| Cold shock protein [Marinobacter sp. ELB17]
 gi|126627146|gb|EAZ97786.1| Cold shock protein [Marinobacter sp. ELB17]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI  E     G DVF+H SA+ + G   L EGQ V +         
Sbjct: 6  TGHVKWFNEAKGFGFIAQE----DGSDVFVHFSAINADGFRTLAEGQKVQFTVTDGPKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  V
Sbjct: 61 -PQAENVTPV 69


>gi|15616931|ref|NP_240144.1| cold shock-like protein CspC [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|219681685|ref|YP_002468071.1| cold shock-like protein CspC [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
 gi|219682240|ref|YP_002468624.1| cold shock-like protein CspC [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|257471376|ref|ZP_05635375.1| cold shock-like protein CspC [Buchnera aphidicola str. LSR1
          (Acyrthosiphon pisum)]
 gi|11131708|sp|P57407|CSPC_BUCAI RecName: Full=Cold shock-like protein CspC; Short=CSP-C
 gi|25296148|pir||F84967 cold shock-like protein cspC [imported] - Buchnera sp.  (strain
          APS)
 gi|10038996|dbj|BAB13030.1| cold shock-like protein cspC [Buchnera aphidicola str. APS
          (Acyrthosiphon pisum)]
 gi|219621973|gb|ACL30129.1| cold shock-like protein CspC [Buchnera aphidicola str. Tuc7
          (Acyrthosiphon pisum)]
 gi|219624528|gb|ACL30683.1| cold shock-like protein CspC [Buchnera aphidicola str. 5A
          (Acyrthosiphon pisum)]
 gi|311086059|gb|ADP66141.1| cold shock-like protein CspC [Buchnera aphidicola str. LL01
          (Acyrthosiphon pisum)]
 gi|311086633|gb|ADP66714.1| cold shock-like protein CspC [Buchnera aphidicola str. TLW03
          (Acyrthosiphon pisum)]
 gi|311087216|gb|ADP67296.1| cold shock-like protein CspC [Buchnera aphidicola str. JF99
          (Acyrthosiphon pisum)]
 gi|311087737|gb|ADP67816.1| cold shock-like protein CspC [Buchnera aphidicola str. JF98
          (Acyrthosiphon pisum)]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP   ++   DVF+H S++   G   LTEGQ V ++  Q+   G
Sbjct: 5  KGQVKWFNESKGFGFITP---SDGSKDVFVHFSSIQGNGFKTLTEGQNVEFEI-QDGQKG 60

Query: 64 KYSAENL 70
            +A N+
Sbjct: 61 P-AAVNV 66


>gi|86137410|ref|ZP_01055987.1| cold shock family protein [Roseobacter sp. MED193]
 gi|85825745|gb|EAQ45943.1| cold shock family protein [Roseobacter sp. MED193]
          Length = 72

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+     G DVF+H S V  +GL  L +   V Y+  +   
Sbjct: 1  MPSGTVKWFNTTKGFGFIEPDA---GGSDVFVHISQVERSGLTGLADNMKVDYELTEG-R 56

Query: 62 NGKYSAENLKLVPKS 76
          +G+  A ++K +  S
Sbjct: 57 DGRQMAGDIKPLMSS 71


>gi|328542846|ref|YP_004302955.1| cold shock-like transcription regulator protein [polymorphum gilvum
           SL003B-26A1]
 gi|326412592|gb|ADZ69655.1| Putative cold shock-like transcription regulator protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 250

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++K++  DKG+GFITP+       DVF+H SAV  +G   L  GQ V+++   +  
Sbjct: 166 RQSGTVKFFKSDKGFGFITPD---NGEADVFVHISAVERSGFTTLDSGQRVSFETEPDRR 222

Query: 62  NGKYSAENLKLVPKSS 77
                A NL+ +   +
Sbjct: 223 GKGPKAVNLQALEGEA 238


>gi|91226280|ref|ZP_01261120.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
 gi|91189291|gb|EAS75570.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
          Length = 70

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFITP+     G D+F+H  ++ S G   L+EGQ V++   Q +   
Sbjct: 6  TGSVKWFNESKGFGFITPD---NGGSDLFVHFKSIVSEGFKTLSEGQKVSFVVEQGNKG- 61

Query: 64 KYSAENLKLV 73
             A+N+ LV
Sbjct: 62 -PQADNVTLV 70


>gi|238782953|ref|ZP_04626981.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
 gi|332163162|ref|YP_004299739.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|6073870|gb|AAB40923.2| major cold shock protein CSPA1 [Yersinia enterocolitica]
 gi|238716156|gb|EEQ08140.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
 gi|318603954|emb|CBY25452.1| cold shock protein CspG [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|325667392|gb|ADZ44036.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330862837|emb|CBX72978.1| cold shock-like protein cspB [Yersinia enterocolitica W22703]
          Length = 70

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVVAL 70


>gi|326445076|ref|ZP_08219810.1| cold shock protein [Streptomyces clavuligerus ATCC 27064]
          Length = 68

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A +G   L EG LV +D  Q   
Sbjct: 1  MASGTVKWFNAEKGFGFIQQDG---GGPDVFAHYSNIAGSGYRELHEGDLVNFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|114571412|ref|YP_758092.1| cold-shock DNA-binding protein family protein [Maricaulis maris
          MCS10]
 gi|114341874|gb|ABI67154.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10]
          Length = 70

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KG+GFITP+   E GDDVF+H SAV ++GL  L++GQ V+++   +  
Sbjct: 1  MSTGVVKFFNQSKGFGFITPD---EGGDDVFVHISAVQASGLPGLSDGQKVSFETEPDRR 57

Query: 62 NGKYSAENLKL 72
               A +L+L
Sbjct: 58 GKGPKAVDLQL 68


>gi|78221460|ref|YP_383207.1| cold-shock DNA-binding protein family protein [Geobacter
          metallireducens GS-15]
 gi|78192715|gb|ABB30482.1| cold-shock DNA-binding protein family [Geobacter metallireducens
          GS-15]
          Length = 66

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  +    +G+DVF H SA+A  G  +LTEG  VT++  +   
Sbjct: 1  MVNGTVKWFNDSKGFGFLEQD----NGEDVFCHFSAIAGDGFKSLTEGDRVTFEVTKG-P 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGLQAANVTRV 66


>gi|307295485|ref|ZP_07575321.1| cold-shock DNA-binding domain protein [Sphingobium
          chlorophenolicum L-1]
 gi|306878524|gb|EFN09744.1| cold-shock DNA-binding domain protein [Sphingobium
          chlorophenolicum L-1]
          Length = 68

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKGYGFI PE   + G+D F+H SAV  AG+  L + Q ++Y+ V+ D 
Sbjct: 1  MPIGTVKFFNADKGYGFIAPE---DGGNDSFVHISAVERAGMVTLQKDQRLSYE-VEMDR 56

Query: 62 NGKYSAENLK 71
           GK SA NL+
Sbjct: 57 RGKQSAVNLQ 66


>gi|302800247|ref|XP_002981881.1| hypothetical protein SELMODRAFT_154869 [Selaginella
          moellendorffii]
 gi|300150323|gb|EFJ16974.1| hypothetical protein SELMODRAFT_154869 [Selaginella
          moellendorffii]
          Length = 182

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP+   +  +++F+H+SA+ + G  +L EG++V +   Q +   
Sbjct: 10 TGKVKWFNVTKGFGFITPD---DGSEELFVHQSAIFAEGFRSLREGEIVEFSVEQGEDQR 66

Query: 64 KYSAEN 69
            +A+ 
Sbjct: 67 MRAADV 72


>gi|15596356|ref|NP_249850.1| cold-shock protein [Pseudomonas aeruginosa PAO1]
 gi|116049091|ref|YP_792107.1| cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152986008|ref|YP_001349574.1| cold-shock protein [Pseudomonas aeruginosa PA7]
 gi|218892877|ref|YP_002441746.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58]
 gi|254234293|ref|ZP_04927616.1| hypothetical protein PACG_00132 [Pseudomonas aeruginosa C3719]
 gi|254239529|ref|ZP_04932851.1| hypothetical protein PA2G_00143 [Pseudomonas aeruginosa 2192]
 gi|296390471|ref|ZP_06879946.1| putative cold-shock protein [Pseudomonas aeruginosa PAb1]
 gi|313106131|ref|ZP_07792386.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
 gi|9947082|gb|AAG04548.1|AE004546_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1]
 gi|115584312|gb|ABJ10327.1| probable cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166224|gb|EAZ51735.1| hypothetical protein PACG_00132 [Pseudomonas aeruginosa C3719]
 gi|126192907|gb|EAZ56970.1| hypothetical protein PA2G_00143 [Pseudomonas aeruginosa 2192]
 gi|150961166|gb|ABR83191.1| probable cold-shock protein [Pseudomonas aeruginosa PA7]
 gi|218773105|emb|CAW28917.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58]
 gi|310878888|gb|EFQ37482.1| putative cold-shock protein [Pseudomonas aeruginosa 39016]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFI  +    SG DVF+H  A+   G  +L EGQ V +  +Q   
Sbjct: 4  REVGTVKWFNDAKGYGFIQRD----SGPDVFVHYRAIRGEGHRSLVEGQKVEFSVIQGQK 59

Query: 62 NGKYSAENLKLV 73
               AE++  V
Sbjct: 60 G--LQAEDVSKV 69


>gi|116696141|ref|YP_841717.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|113530640|emb|CAJ96987.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
          Length = 67

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+   E G+D+F H SA+   G  +L EGQ V Y       
Sbjct: 1  METGTVKWFNDAKGFGFITPD---EGGNDLFAHFSAIEGNGFKSLKEGQKVRY-VKAMGQ 56

Query: 62 NGKYS 66
           G+ +
Sbjct: 57 KGEQA 61


>gi|254363164|ref|ZP_04979213.1| cold shock protein [Mannheimia haemolytica PHL213]
 gi|261493957|ref|ZP_05990465.1| cold shock protein [Mannheimia haemolytica serotype A2 str.
          BOVINE]
 gi|261494758|ref|ZP_05991237.1| cold shock protein [Mannheimia haemolytica serotype A2 str.
          OVINE]
 gi|153095058|gb|EDN75609.1| cold shock protein [Mannheimia haemolytica PHL213]
 gi|261309575|gb|EEY10799.1| cold shock protein [Mannheimia haemolytica serotype A2 str.
          OVINE]
 gi|261310389|gb|EEY11584.1| cold shock protein [Mannheimia haemolytica serotype A2 str.
          BOVINE]
          Length = 70

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62
           G++KW+N  KG+GFITP+   + G DVF+H SA+ +  G   L +G  V ++   ++  
Sbjct: 5  TGTVKWFNATKGFGFITPD---QGGKDVFVHFSAIEANGGYRTLEDGAKVQFEIQDSERG 61

Query: 63 GKYSAENLKLV 73
             SA N+K +
Sbjct: 62 --ASAVNVKTI 70


>gi|51597878|ref|YP_072069.1| major cold shock protein Cspa2 [Yersinia pseudotuberculosis IP
          32953]
 gi|186897074|ref|YP_001874186.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|51591160|emb|CAH22825.1| major cold shock protein Cspa2 [Yersinia pseudotuberculosis IP
          32953]
 gi|186700100|gb|ACC90729.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
          Length = 70

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP    + G DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFDAGKGFGFITP---ADGGKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PAAVNVIAL 70


>gi|119475680|ref|ZP_01616033.1| cold-shock DNA-binding domain protein [marine gamma
          proteobacterium HTCC2143]
 gi|119451883|gb|EAW33116.1| cold-shock DNA-binding domain protein [marine gamma
          proteobacterium HTCC2143]
          Length = 68

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF H SA+ S+G   L EGQ V +         
Sbjct: 5  TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAIVSSGFKTLAEGQRVEFTVTAGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 60 -PQAENIVAI 68


>gi|28900407|ref|NP_800062.1| cold shock DNA-binding domain-containing protein [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|91227011|ref|ZP_01261548.1| cold shock DNA-binding domain protein [Vibrio alginolyticus
          12G01]
 gi|153837377|ref|ZP_01990044.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus
          AQ3810]
 gi|254228898|ref|ZP_04922320.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25]
 gi|260362063|ref|ZP_05775059.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          K5030]
 gi|260877358|ref|ZP_05889713.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AN-5034]
 gi|260898395|ref|ZP_05906891.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          Peru-466]
 gi|260902872|ref|ZP_05911267.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AQ4037]
 gi|262396755|ref|YP_003288608.1| cold shock protein CspE [Vibrio sp. Ex25]
 gi|269968331|ref|ZP_06182351.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 40B]
 gi|28808718|dbj|BAC61895.1| cold shock DNA-binding domain protein [Vibrio parahaemolyticus
          RIMD 2210633]
 gi|91188813|gb|EAS75099.1| cold shock DNA-binding domain protein [Vibrio alginolyticus
          12G01]
 gi|149749292|gb|EDM60071.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus
          AQ3810]
 gi|151938575|gb|EDN57411.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25]
 gi|262340349|gb|ACY54143.1| cold shock protein CspE [Vibrio sp. Ex25]
 gi|269827049|gb|EEZ81363.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 40B]
 gi|308085077|gb|EFO34772.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          Peru-466]
 gi|308090568|gb|EFO40263.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AN-5034]
 gi|308107799|gb|EFO45339.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AQ4037]
 gi|308113783|gb|EFO51323.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          K5030]
 gi|328470361|gb|EGF41272.1| cold shock protein CspE [Vibrio parahaemolyticus 10329]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H SA+   G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAITGDGFRTLVEGQKVEFVISQGQKG- 60

Query: 64 KYSAENLKLV 73
             AE +K++
Sbjct: 61 -PQAEQIKVL 69


>gi|310778745|ref|YP_003967078.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
 gi|309748068|gb|ADO82730.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
          Length = 66

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFIT    +E G DVF H S +   G  +L EG+ VT++  +   
Sbjct: 1  MANGTVKWFNAEKGFGFIT----SEDGTDVFAHFSEIQKDGFKSLEEGEQVTFEITKGQK 56

Query: 62 NGKYSAENLKLV 73
               A N+K V
Sbjct: 57 G--PQASNIKTV 66


>gi|228990213|ref|ZP_04150183.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
 gi|228996304|ref|ZP_04155949.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|229003971|ref|ZP_04161777.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
 gi|228757340|gb|EEM06579.1| Cold shock protein cspB [Bacillus mycoides Rock1-4]
 gi|228763496|gb|EEM12398.1| Cold shock protein cspB [Bacillus mycoides Rock3-17]
 gi|228769576|gb|EEM18169.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442]
          Length = 67

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI        G+DVF+H SA+ + G  +L EG+ V+++  ++ 
Sbjct: 1  MTVTGQVKWFNNEKGFGFIE----VPGGNDVFVHFSAITTEGFKSLEEGEKVSFEI-EDG 55

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 56 NRGPQAKNVVKL 67


>gi|327480906|gb|AEA84216.1| cold-shock protein CspD [Pseudomonas stutzeri DSM 4166]
          Length = 87

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G  E   D+F H SA+   G   L  GQ V ++ +Q   
Sbjct: 1  MLSGKVKWFNNAKGYGFIVADGGDE---DLFAHYSAIQMEGYRTLKAGQAVMFNILQGPK 57

Query: 62 N------GKYSAENLKLVPKSSN 78
                     A +    P ++ 
Sbjct: 58 GLHATDIRPQQAVSEATTPAAAQ 80


>gi|307825897|ref|ZP_07656112.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307733016|gb|EFO03878.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI  E     G DVF+H SA+  AG   L EGQ VT +  Q      
Sbjct: 7  GTVKWFNDEKGFGFIEQE----GGKDVFVHHSAINGAGRKTLREGQKVTMEVTQGQKG-- 60

Query: 65 YSAENLK 71
            AEN+ 
Sbjct: 61 PQAENVT 67


>gi|193875878|gb|ACF24575.1| glycine-rich nucleic acid binding protein [Gymnochlora stellata]
          Length = 290

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G+ KW+N  KGYGFI P    E  DD+F+H++A+ + G  +L EG+ V +D V+ DA
Sbjct: 23 RQSGTCKWFNTVKGYGFILP---QEGKDDIFVHQTAIKAVGFRSLAEGEQVEFD-VEVDA 78

Query: 62 NGKYSAENLK 71
           G+  A N+ 
Sbjct: 79 TGRKKARNVT 88


>gi|148652425|ref|YP_001279518.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          sp. PRwf-1]
 gi|148571509|gb|ABQ93568.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1]
 gi|332977982|gb|EGK14726.1| cold shock protein CspA [Psychrobacter sp. 1501(2011)]
          Length = 71

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  +   + G DVF H SA+  +G   L EGQ VT+   Q     
Sbjct: 6  QGTVKWFNEAKGFGFIAQD---DGGQDVFAHYSAIQGSGFKTLAEGQKVTFVLGQGQKGP 62

Query: 64 K 64
          +
Sbjct: 63 Q 63


>gi|66046414|ref|YP_236255.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|63257121|gb|AAY38217.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|330972895|gb|EGH72961.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 92

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  EG ++  +D+F+H SA+   G   L  GQ V ++      
Sbjct: 1  MIEGKVKWFNNAKGFGFINAEGKSD--EDLFVHFSAIEMDGYKTLKAGQKVRFEVAHGPK 58

Query: 62 N 62
           
Sbjct: 59 G 59


>gi|333025177|ref|ZP_08453241.1| putative cold shock protein [Streptomyces sp. Tu6071]
 gi|332745029|gb|EGJ75470.1| putative cold shock protein [Streptomyces sp. Tu6071]
          Length = 62

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N +KG+GFI  EG    G DVF+H SA+ + G  +L E Q VT+D  Q        
Sbjct: 1  MKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVTFDVTQGPKG--PQ 55

Query: 67 AENLKLV 73
          AEN+  +
Sbjct: 56 AENVSAL 62


>gi|229592287|ref|YP_002874406.1| major cold shock protein [Pseudomonas fluorescens SBW25]
 gi|229364153|emb|CAY51796.1| major cold shock protein [Pseudomonas fluorescens SBW25]
          Length = 70

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59

Query: 62 N 62
           
Sbjct: 60 G 60


>gi|313498101|gb|ADR59467.1| Cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida BIRD-1]
          Length = 88

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  EG ++   D+F H SA+   G   L  GQ V +D VQ   
Sbjct: 1  MASGKVKWFNNAKGYGFINEEGKSD---DLFAHYSAIRMDGYKTLKAGQAVIFDIVQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|78486201|ref|YP_392126.1| cold-shock DNA-binding domain-containing protein [Thiomicrospira
          crunogena XCL-2]
 gi|78364487|gb|ABB42452.1| cold-shock DNA-binding protein family [Thiomicrospira crunogena
          XCL-2]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI  E     G DVF+H SA+  AG  +L EGQ VT +  Q     
Sbjct: 6  TGTVKWFNDEKGFGFIEQE----GGKDVFVHFSAINGAGRKSLMEGQSVTMEVTQGQKG- 60

Query: 64 KYSAENLK 71
             AEN+ 
Sbjct: 61 -PQAENVT 67


>gi|330983211|gb|EGH81314.1| cold shock protein [Pseudomonas syringae pv. aptata str. DSM
          50252]
          Length = 67

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITP    +SGDD+F+H  A+ S G  +L EGQ V++   +   
Sbjct: 2  RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQK 57

Query: 62 NGKYSAENLKLV 73
               AE ++++
Sbjct: 58 G--MQAEEVQVI 67


>gi|326794422|ref|YP_004312242.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
           MMB-1]
 gi|326545186|gb|ADZ90406.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 154

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GF+T     + GDDVF+H  A+   G   L EGQ V +   + +    
Sbjct: 90  GTVKWFNSSKGFGFLT----LDDGDDVFVHYRAIRGRGRRFLVEGQKVRFYVTEGEKG-- 143

Query: 65  YSAENLKLV 73
             AEN+ ++
Sbjct: 144 KQAENVSII 152


>gi|330722048|gb|EGG99970.1| Cold shock protein CspA [gamma proteobacterium IMCC2047]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFI        G DVF+H  A+   G   L +GQ V Y  V++    
Sbjct: 6  TGTVKWFNNAKGYGFIEHH----DGQDVFVHYRAIRGEGYRKLNDGQEVEYSIVESQKG- 60

Query: 64 KYSAENLKLV 73
             AE++  V
Sbjct: 61 -LQAEDVTPV 69


>gi|152995681|ref|YP_001340516.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
          MWYL1]
 gi|150836605|gb|ABR70581.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
          MWYL1]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  E    SG DVF H SA+AS+G   L EGQ V +  V     G
Sbjct: 6  KGTVKWFNEIKGFGFIEQE----SGPDVFAHFSAIASSGFKTLAEGQQVEF-VVTAGQKG 60

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 61 PQ-AENITVL 69


>gi|84386379|ref|ZP_00989407.1| putative Cold shock-like protein [Vibrio splendidus 12B01]
 gi|86146530|ref|ZP_01064852.1| putative Cold shock-like protein [Vibrio sp. MED222]
 gi|218708238|ref|YP_002415859.1| putative cold shock protein [Vibrio splendidus LGP32]
 gi|84378803|gb|EAP95658.1| putative Cold shock-like protein [Vibrio splendidus 12B01]
 gi|85835587|gb|EAQ53723.1| putative Cold shock-like protein [Vibrio sp. MED222]
 gi|218321257|emb|CAV17207.1| putative cold shock protein [Vibrio splendidus LGP32]
          Length = 70

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KG+GF+T +     G DVF+H  A+AS G   L EGQ V+++  Q    G
Sbjct: 6  NGVVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 LQAANVVAL 70


>gi|257063443|ref|YP_003143115.1| cold-shock DNA-binding protein family [Slackia heliotrinireducens
          DSM 20476]
 gi|256791096|gb|ACV21766.1| cold-shock DNA-binding protein family [Slackia heliotrinireducens
          DSM 20476]
          Length = 67

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++P+KGYGFI+       G+++F+H S +   G   L EG  VT++  +  A
Sbjct: 1  MAEGTVKWFSPEKGYGFISQ----ADGENLFVHFSEIQMDGYKTLEEGAKVTFEVTEG-A 55

Query: 62 NGKYSAENL 70
          NGK  A N+
Sbjct: 56 NGKKQASNV 64


>gi|109898691|ref|YP_661946.1| cold-shock DNA-binding domain-containing protein
          [Pseudoalteromonas atlantica T6c]
 gi|109700972|gb|ABG40892.1| cold-shock DNA-binding protein family [Pseudoalteromonas
          atlantica T6c]
          Length = 84

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI PE   + GDD+F H S +   G  +L  GQ V YD  Q   
Sbjct: 13 MAVGKVKWFNNAKGFGFIVPE---DGGDDIFAHYSTIQMEGYRSLKAGQEVKYDVQQGPK 69

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 70 G--LHAENI 76


>gi|157158051|ref|YP_001462848.1| cold shock DNA-binding protein [Escherichia coli E24377A]
 gi|331668012|ref|ZP_08368867.1| conserved domain protein [Escherichia coli TA271]
 gi|331673146|ref|ZP_08373914.1| conserved domain protein [Escherichia coli TA280]
 gi|157080081|gb|ABV19789.1| cold shock DNA-binding protein [Escherichia coli E24377A]
 gi|222033318|emb|CAP76058.1| Cold shock-like protein cspB [Escherichia coli LF82]
 gi|331064754|gb|EGI36658.1| conserved domain protein [Escherichia coli TA271]
 gi|331069344|gb|EGI40731.1| conserved domain protein [Escherichia coli TA280]
          Length = 71

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   DVF+H SA+ +     L EGQ VT+   ++ A G
Sbjct: 6  TGLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSI-ESGAKG 61

Query: 64 KYSAENL 70
            +A N+
Sbjct: 62 P-AAVNV 67


>gi|33152145|ref|NP_873498.1| cold shock-like protein CspC [Haemophilus ducreyi 35000HP]
 gi|33148367|gb|AAP95887.1| cold shock-like protein CspC [Haemophilus ducreyi 35000HP]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP+     G D+F+H S +  +    L EG  V ++   +D   
Sbjct: 5  TGIVKWFNSTKGFGFITPDL---GGKDIFVHFSGIIGSNFRTLEEGAKVEFEVQDSDRG- 60

Query: 64 KYSAENLKLV 73
            SA N+K +
Sbjct: 61 -PSAVNVKAL 69


>gi|222086272|ref|YP_002544804.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221723720|gb|ACM26876.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 70

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +K++N DKG+GFITP+G      DVF+H SA+ ++G+ +L EGQ VT+D   + 
Sbjct: 1  MATKGIVKFFNQDKGFGFITPDG---GAKDVFVHISALQASGIQSLREGQQVTFDTEPDR 57

Query: 61 ANGKYSAENLK 71
                A N++
Sbjct: 58 MGKGPKAVNIQ 68


>gi|119945819|ref|YP_943499.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119864423|gb|ABM03900.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI       SG DVF H SA+AS G   L EGQ V +   Q     
Sbjct: 6  QGTVKWFNEAKGFGFIEQ----ASGPDVFAHFSAIASEGFKTLAEGQKVEFSVSQGQKG- 60

Query: 64 KYSAENL 70
             A+N+
Sbjct: 61 -PQADNI 66


>gi|39997003|ref|NP_952954.1| cold shock domain-contain protein [Geobacter sulfurreducens PCA]
 gi|39983891|gb|AAR35281.1| cold shock domain family protein [Geobacter sulfurreducens PCA]
 gi|298506020|gb|ADI84743.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
          KN400]
          Length = 66

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  +    +G+DVF+H SA+   G  +L EG+ V++D V N  
Sbjct: 1  MAIGRVKWFNDAKGFGFIEQD----NGEDVFVHFSAIQQDGFKSLAEGEQVSFDVV-NGP 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 KGLQAANVKK 65


>gi|15602520|ref|NP_245592.1| MsmB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720931|gb|AAK02739.1| MsmB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFITP    + G D+F+H S +  +    L EG  V Y  VQ+   G
Sbjct: 5  NGTVKWFNSDKGFGFITP---ADGGKDLFVHFSGIIGSNYRTLNEGDRVEYS-VQDSQRG 60

Query: 64 KYSAENLKLV 73
            SA ++K +
Sbjct: 61 P-SAIDVKAI 69


>gi|163857153|ref|YP_001631451.1| cold shock-like protein [Bordetella petrii DSM 12804]
 gi|163260881|emb|CAP43183.1| cold shock-like protein [Bordetella petrii]
          Length = 67

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N DKG+GFI PE     G D+F H S + S G  +L E Q V+Y  VQ   
Sbjct: 1  METGIVKWFNADKGFGFIMPE---NGGKDLFAHFSGIESEGYKSLEENQRVSY--VQTQG 55

Query: 62 NGKYSAENLKLV 73
               A  ++++
Sbjct: 56 AKGPQATKIRVL 67


>gi|78065585|ref|YP_368354.1| cold-shock DNA-binding protein family protein [Burkholderia sp.
          383]
 gi|77966330|gb|ABB07710.1| cold-shock DNA-binding protein family [Burkholderia sp. 383]
          Length = 67

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V++D V+   
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIKMDGFKTLKENQRVSFD-VKVGP 56

Query: 62 NGKYSAENLKLV 73
           GK +A N++ V
Sbjct: 57 KGKQAA-NIQAV 67


>gi|223470486|gb|ACM90505.1| cold shock protein [Psychromonas arctica]
          Length = 68

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI       SG DVF H SA+AS G   L EGQ V +   Q     
Sbjct: 5  QGTVKWFNESKGFGFIEQ----ASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGPKG- 59

Query: 64 KYSAENL 70
             AEN+
Sbjct: 60 -PQAENI 65


>gi|71735994|ref|YP_273427.1| cold shock domain-contain protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|257487383|ref|ZP_05641424.1| cold shock domain-contain protein [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|289623813|ref|ZP_06456767.1| cold shock domain-contain protein [Pseudomonas syringae pv.
          aesculi str. NCPPB3681]
 gi|289649164|ref|ZP_06480507.1| cold shock domain-contain protein [Pseudomonas syringae pv.
          aesculi str. 2250]
 gi|298485821|ref|ZP_07003899.1| Cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB
          3335]
 gi|71556547|gb|AAZ35758.1| cold shock domain family protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|298159645|gb|EFI00688.1| Cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB
          3335]
 gi|320322886|gb|EFW78977.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320329805|gb|EFW85793.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330867848|gb|EGH02557.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          aesculi str. 0893_23]
 gi|330989711|gb|EGH87814.1| cold shock domain-contain protein [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 70

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59

Query: 62 NGKYSAENLK 71
               A+ ++
Sbjct: 60 G--MQADEVQ 67


>gi|332306352|ref|YP_004434203.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|332173681|gb|AEE22935.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 72

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI PE   + GDD+F H S +   G  +L  GQ V YD  Q   
Sbjct: 1  MAVGKVKWFNNAKGFGFIVPE---DGGDDIFAHYSTIQMEGYRSLKAGQEVKYDVQQGPK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--LHAENI 64


>gi|317492863|ref|ZP_07951287.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918985|gb|EFV40320.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 70

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+PE   +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFDAGKGFGFISPE---DGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVVAL 70


>gi|238898015|ref|YP_002923695.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Candidatus Hamiltonella
          defensa 5AT (Acyrthosiphon pisum)]
 gi|229465773|gb|ACQ67547.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Candidatus Hamiltonella
          defensa 5AT (Acyrthosiphon pisum)]
          Length = 69

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFITP+   ++  DVF+H SA+  +G   L EGQ V ++        
Sbjct: 5  KGKVKWFNESKGFGFITPD---DNSKDVFVHFSAIQDSGFKTLAEGQGVEFEIADGQKG- 60

Query: 64 KYSAENLKLV 73
            SA ++  +
Sbjct: 61 -PSAVDVNKI 69


>gi|70731986|ref|YP_261728.1| temperature acclimation protein b, fragment-like protein
          [Pseudomonas fluorescens Pf-5]
 gi|68346285|gb|AAY93891.1| temperature acclimation protein b [Pseudomonas fluorescens Pf-5]
          Length = 70

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59

Query: 62 NGKYSAENLK 71
               A+ ++
Sbjct: 60 G--MQADEVQ 67


>gi|15965657|ref|NP_386010.1| putative cold shock-like transcription regulator protein
          [Sinorhizobium meliloti 1021]
 gi|150396829|ref|YP_001327296.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|307315974|ref|ZP_07595463.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307321238|ref|ZP_07600640.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|15074838|emb|CAC46483.1| Cold shock protein [Sinorhizobium meliloti 1021]
 gi|150028344|gb|ABR60461.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
 gi|306893140|gb|EFN23924.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306898377|gb|EFN29075.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 70

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +K++N DKG+GFITPEG      DVF+H +AV +AGL  L +GQ V++D   + 
Sbjct: 1  MATKGIVKFFNQDKGFGFITPEG---GSKDVFVHITAVQAAGLTTLNDGQEVSFDTEPDR 57

Query: 61 ANGKYSAENLKLV 73
                A NL+ +
Sbjct: 58 MGKGPKAVNLQAL 70


>gi|322515089|ref|ZP_08068096.1| CspA family cold shock transcriptional regulator [Actinobacillus
          ureae ATCC 25976]
 gi|322118895|gb|EFX91077.1| CspA family cold shock transcriptional regulator [Actinobacillus
          ureae ATCC 25976]
          Length = 69

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP+   + G D+F+H S +  +    L EG  V ++   +D   
Sbjct: 5  TGIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFEVQDSDRG- 60

Query: 64 KYSAENLKLV 73
            SA N+K +
Sbjct: 61 -PSAVNVKAL 69


>gi|119945641|ref|YP_943321.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119864245|gb|ABM03722.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G++KW+N  KG+GFI       SG DVF+H SA+AS G   L EGQ V +   Q    
Sbjct: 5  EQGTVKWFNEAKGFGFIEQ----ASGPDVFVHFSAIASEGFKTLAEGQKVEFTVSQGPKG 60

Query: 63 GK 64
           +
Sbjct: 61 PQ 62


>gi|162447160|ref|YP_001620292.1| DNA-binding cold shock protein [Acholeplasma laidlawii PG-8A]
 gi|161985267|gb|ABX80916.1| cold shock protein, DNA-binding [Acholeplasma laidlawii PG-8A]
          Length = 65

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KGYGFIT     ++G DVF+H SA+ + G  +L EG  V ++  ++   G
Sbjct: 2  KGTVKWFDAGKGYGFIT----ADNGKDVFVHYSAIQTDGYKSLAEGDQVEFEI-KSGDRG 56

Query: 64 KYSAENLKL 72
            +A   K+
Sbjct: 57 DQAANVSKI 65


>gi|289679173|ref|ZP_06500063.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae FF5]
 gi|330900613|gb|EGH32032.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 91

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  EG+ E   D+F H SA+   G   L  GQ V ++  Q   
Sbjct: 1  MIEGKVKWFNNAKGFGFINAEGNDE---DLFAHFSAIEMDGYKTLKAGQKVRFEVAQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|312114304|ref|YP_004011900.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
 gi|311219433|gb|ADP70801.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
          Length = 71

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N  KG+GFITP+   E G DVF+H SAV  +G+  L EG  VTY+   + 
Sbjct: 1  MRQTGTVKFFNQAKGFGFITPD---EGGKDVFVHISAVERSGVGMLDEGMRVTYETQPDP 57

Query: 61 ANGKYSAENLK 71
                A NL+
Sbjct: 58 KGKGPKAVNLE 68


>gi|260773863|ref|ZP_05882778.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
 gi|260610824|gb|EEX36028.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
          Length = 70

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI+ +     G DVF+H +++ S G   L EGQ V+++ V+    G
Sbjct: 6  TGTVKWFNETKGFGFISQD---NGGKDVFVHFNSIVSDGFKTLAEGQKVSFN-VEEGKKG 61

Query: 64 KYSAENLKL 72
            + E   L
Sbjct: 62 PQATEVTPL 70


>gi|226307843|ref|YP_002767803.1| cold shock protein [Rhodococcus erythropolis PR4]
 gi|229494927|ref|ZP_04388678.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|226186960|dbj|BAH35064.1| probable cold shock protein [Rhodococcus erythropolis PR4]
 gi|229318151|gb|EEN84021.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 67

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI PE   +   DVF+H S + S G   L E Q V ++  Q + 
Sbjct: 1  MAEGIVKWFNSEKGFGFIAPE---DGSADVFVHYSEIQSGGFRTLEENQRVAFEIGQGNK 57

Query: 62 NGKYSAENLKLV 73
               A  + +V
Sbjct: 58 G--PQATGVTIV 67


>gi|322434962|ref|YP_004217174.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321162689|gb|ADW68394.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI+     ++G+DVF H SA+ S+G  +L EGQ V ++ V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFIS----RQNGEDVFAHYSAITSSGFKSLQEGQAVQFNVVKGPK 56

Query: 62 NGKYSAENLKLV 73
             + A +++ +
Sbjct: 57 G--WQAADIQPL 66


>gi|281336080|gb|ADA62629.1| Cold shock protein CspC [Staphylococcus epidermidis]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW++ DKG+GFI  +    +G+DVF+H S +A  G  +L EGQ V +D V+   
Sbjct: 1  MNNGTVKWFHADKGFGFIERD----NGNDVFVHYSVIAGEGYKSLEEGQNVDFDIVEGQR 56

Query: 62 NGKYSAENLKLV 73
               A N+ ++
Sbjct: 57 G--EQATNVVVM 66


>gi|222149268|ref|YP_002550225.1| cold shock protein [Agrobacterium vitis S4]
 gi|221736252|gb|ACM37215.1| cold shock protein [Agrobacterium vitis S4]
          Length = 67

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKG+GFITPE     G DVF+H S++      +L EG  V+++  Q+  
Sbjct: 1  MPTGTVKFFNDDKGFGFITPE---NGGTDVFVHVSSLQRG--DSLREGDKVSFEIGQDRK 55

Query: 62 NGKYSAENLKLV 73
           GK  AEN+ ++
Sbjct: 56 TGKSKAENVSVL 67


>gi|254283369|ref|ZP_04958337.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR51-B]
 gi|219679572|gb|EED35921.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR51-B]
          Length = 69

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      +SG DVF H SA+  +G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNESKGFGFIEQ----KSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  V
Sbjct: 61 -PQAENIVAV 69


>gi|213968381|ref|ZP_03396525.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          T1]
 gi|301384647|ref|ZP_07233065.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          Max13]
 gi|302058900|ref|ZP_07250441.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          K40]
 gi|302133013|ref|ZP_07259003.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          NCPPB 1108]
 gi|213927019|gb|EEB60570.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          T1]
          Length = 70

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+  +G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGSGFKSLKEGQKVTFIAVQGQK 59

Query: 62 N 62
           
Sbjct: 60 G 60


>gi|160901501|ref|YP_001567082.1| cold-shock DNA-binding domain-containing protein [Petrotoga
          mobilis SJ95]
 gi|160359145|gb|ABX30759.1| cold-shock DNA-binding domain protein [Petrotoga mobilis SJ95]
          Length = 65

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++  KGYGFIT     E G+DVF+H SAV   G   L E Q V ++ V+ D   
Sbjct: 2  KGKVKWFDSKKGYGFIT----GEDGNDVFVHFSAVQMDGYRKLEEDQEVEFEVVEGDKG- 56

Query: 64 KYSAENLKLV 73
             A N++ +
Sbjct: 57 -PQASNVRPL 65


>gi|123444001|ref|YP_001007971.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|123444002|ref|YP_001007972.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122090962|emb|CAL13844.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122090963|emb|CAL13845.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
          Length = 70

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +   ++ A G
Sbjct: 6  TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ESGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVVAL 70


>gi|294470714|gb|ADE80749.1| cold shock domain protein 2 [Eutrema salsugineum]
          Length = 201

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 46/70 (65%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            RG++KW++  KG+GFITP+   ++GDD+F+H+S++ S G  +L   + V ++ V+ D 
Sbjct: 11 RRRGTVKWFDTQKGFGFITPD---DAGDDLFVHQSSIRSDGFRSLAADESVEFE-VEMDN 66

Query: 62 NGKYSAENLK 71
          NG+  A  + 
Sbjct: 67 NGRPKAIEVS 76


>gi|257455324|ref|ZP_05620559.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
 gi|257447286|gb|EEV22294.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
          Length = 70

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  +     G DVF H SA+  +G   L EGQ V++   Q     
Sbjct: 6  TGTVKWFNESKGFGFIAQD---NGGQDVFAHYSAIQGSGFKTLKEGQRVSFVLSQGQKG- 61

Query: 64 KYSAENLK 71
             AE ++
Sbjct: 62 -PQAEQIE 68


>gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
          HTCC2255]
 gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
          HTCC2255]
          Length = 531

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 3/74 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ WYNP KG GFI P+   + GDDVF+H SA+ ++GL  + EG ++TY+ + ++ 
Sbjct: 1  MLTGTVIWYNPVKGLGFINPD---QGGDDVFVHMSALKASGLKVVKEGDMLTYELLLDEK 57

Query: 62 NGKYSAENLKLVPK 75
           GK +A N+ ++ K
Sbjct: 58 TGKKAASNVTILKK 71


>gi|255523658|ref|ZP_05390625.1| cold-shock DNA-binding domain protein [Clostridium
          carboxidivorans P7]
 gi|255512713|gb|EET88986.1| cold-shock DNA-binding domain protein [Clostridium
          carboxidivorans P7]
          Length = 65

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT     E G DVF+H S + S G  +L EGQ V++D V+     
Sbjct: 2  NGTVKWFNGEKGFGFIT----GEDGKDVFVHFSQIKSEGYKSLEEGQEVSFDAVKGPKG- 56

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 57 -LQAENVTIL 65


>gi|225871753|ref|YP_002753207.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793287|gb|ACO33377.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GF++      +G+DVF+H SA+ S G  +L EGQ V ++ V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFLS----RPNGEDVFVHFSAITSNGFRSLQEGQAVQFNVVKGAK 56

Query: 62 NGKYSAENLKLV 73
             + AEN++ +
Sbjct: 57 G--WQAENVQAL 66


>gi|77918392|ref|YP_356207.1| cold shock proteins [Pelobacter carbinolicus DSM 2380]
 gi|77544475|gb|ABA88037.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
          DSM 2380]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +    +G DVF+H S +   G  +L EG  V ++  Q   
Sbjct: 1  MAEGTVKWFNDAKGFGFIEQD----NGPDVFVHFSEIQGEGFKSLAEGDRVVFEVTQGQK 56

Query: 62 NGKYSAENLKLV 73
               + N++ V
Sbjct: 57 G--PQSVNVRRV 66


>gi|330981383|gb|EGH79486.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 91

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  EG+ E   D+F H SA+   G   L  GQ V ++  Q   
Sbjct: 1  MIEGKVKWFNNAKGFGFINAEGNNE---DLFAHFSAIEMDGYKTLKAGQKVRFEVAQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|83647927|ref|YP_436362.1| cold shock protein [Hahella chejuensis KCTC 2396]
 gi|83635970|gb|ABC31937.1| Cold shock protein [Hahella chejuensis KCTC 2396]
          Length = 158

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G +KW+NP+KG+GFIT E     GDD+F+H  ++   G  +L +GQ V +  V+ D 
Sbjct: 92  RESGIVKWFNPNKGFGFITRE----GGDDIFVHFRSIRGRGHRSLRQGQKVRFRTVEGDK 147

Query: 62  NGKYSAENLKLV 73
                AE++  V
Sbjct: 148 G--LQAEDVSPV 157


>gi|71725901|gb|AAZ39069.1| cold shock protein [Exiguobacterium undae]
          Length = 69

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 5/65 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N ++G+GFI  E    SGDDVF+H SA+ + G  +L EGQ V+++ V+    G 
Sbjct: 8  GTVKWFNLEEGFGFIERE----SGDDVFVHFSAIQTDGFKSLDEGQEVSFE-VEEGQRGP 62

Query: 65 YSAEN 69
           +A  
Sbjct: 63 QAANV 67


>gi|15600936|ref|NP_232566.1| cold shock transcriptional regulator CspA [Vibrio cholerae O1
          biovar eltor str. N16961]
 gi|121587988|ref|ZP_01677741.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          2740-80]
 gi|121728193|ref|ZP_01681227.1| cold shock transcriptional regulator CspA [Vibrio cholerae V52]
 gi|147671768|ref|YP_001215947.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395]
 gi|153214405|ref|ZP_01949376.1| cold shock transcriptional regulator CspA [Vibrio cholerae 1587]
 gi|153802385|ref|ZP_01956971.1| cold shock transcriptional regulator CspA [Vibrio cholerae MZO-3]
 gi|153816822|ref|ZP_01969489.1| cold shock transcriptional regulator CspA [Vibrio cholerae NCTC
          8457]
 gi|153825020|ref|ZP_01977687.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2]
 gi|153830344|ref|ZP_01983011.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          623-39]
 gi|227811792|ref|YP_002811802.1| cold shock transcriptional regulator CspA [Vibrio cholerae M66-2]
 gi|229506667|ref|ZP_04396176.1| cold shock protein CspG [Vibrio cholerae BX 330286]
 gi|229510535|ref|ZP_04400015.1| cold shock protein CspG [Vibrio cholerae B33]
 gi|229514666|ref|ZP_04404127.1| cold shock protein CspG [Vibrio cholerae TMA 21]
 gi|229517333|ref|ZP_04406778.1| cold shock protein CspG [Vibrio cholerae RC9]
 gi|229522836|ref|ZP_04412250.1| cold shock protein CspG [Vibrio cholerae TM 11079-80]
 gi|229527853|ref|ZP_04417244.1| cold shock protein CspG [Vibrio cholerae 12129(1)]
 gi|229605144|ref|YP_002875848.1| cold shock protein CspG [Vibrio cholerae MJ-1236]
 gi|254286659|ref|ZP_04961614.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          AM-19226]
 gi|254850434|ref|ZP_05239784.1| cold shock transcriptional regulator CspA [Vibrio cholerae MO10]
 gi|255746020|ref|ZP_05419967.1| cold shock protein CspG [Vibrio cholera CIRS 101]
 gi|261212663|ref|ZP_05926947.1| cold shock protein CspG [Vibrio sp. RC341]
 gi|262162141|ref|ZP_06031156.1| cold shock protein CspG [Vibrio cholerae INDRE 91/1]
 gi|262164784|ref|ZP_06032522.1| cold shock protein CspG [Vibrio mimicus VM223]
 gi|262167803|ref|ZP_06035504.1| cold shock protein CspG [Vibrio cholerae RC27]
 gi|262173002|ref|ZP_06040679.1| cold shock protein CspG [Vibrio mimicus MB-451]
 gi|262189592|ref|ZP_06047992.1| cold shock protein CspG [Vibrio cholerae CT 5369-93]
 gi|262403347|ref|ZP_06079907.1| cold shock protein CspG [Vibrio sp. RC586]
 gi|297579705|ref|ZP_06941632.1| cold shock transcriptional regulator CspA [Vibrio cholerae RC385]
 gi|298500023|ref|ZP_07009829.1| cold shock transcriptional regulator CspA [Vibrio cholerae MAK
          757]
 gi|20138011|sp|Q9KN00|CSPA_VIBCH RecName: Full=Cold shock-like protein CspA
 gi|9657556|gb|AAF96079.1| cold shock transcriptional regulator CspA [Vibrio cholerae O1
          biovar El Tor str. N16961]
 gi|121547786|gb|EAX57875.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          2740-80]
 gi|121629516|gb|EAX61940.1| cold shock transcriptional regulator CspA [Vibrio cholerae V52]
 gi|124115354|gb|EAY34174.1| cold shock transcriptional regulator CspA [Vibrio cholerae 1587]
 gi|124122104|gb|EAY40847.1| cold shock transcriptional regulator CspA [Vibrio cholerae MZO-3]
 gi|126512625|gb|EAZ75219.1| cold shock transcriptional regulator CspA [Vibrio cholerae NCTC
          8457]
 gi|146314151|gb|ABQ18691.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395]
 gi|148874187|gb|EDL72322.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          623-39]
 gi|149741345|gb|EDM55379.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2]
 gi|150423243|gb|EDN15189.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          AM-19226]
 gi|227010934|gb|ACP07145.1| cold shock transcriptional regulator CspA [Vibrio cholerae M66-2]
 gi|227014793|gb|ACP11002.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395]
 gi|229334215|gb|EEN99700.1| cold shock protein CspG [Vibrio cholerae 12129(1)]
 gi|229340053|gb|EEO05061.1| cold shock protein CspG [Vibrio cholerae TM 11079-80]
 gi|229345369|gb|EEO10342.1| cold shock protein CspG [Vibrio cholerae RC9]
 gi|229348646|gb|EEO13604.1| cold shock protein CspG [Vibrio cholerae TMA 21]
 gi|229352980|gb|EEO17920.1| cold shock protein CspG [Vibrio cholerae B33]
 gi|229357018|gb|EEO21936.1| cold shock protein CspG [Vibrio cholerae BX 330286]
 gi|229371630|gb|ACQ62052.1| cold shock protein CspG [Vibrio cholerae MJ-1236]
 gi|254846139|gb|EET24553.1| cold shock transcriptional regulator CspA [Vibrio cholerae MO10]
 gi|255735774|gb|EET91172.1| cold shock protein CspG [Vibrio cholera CIRS 101]
 gi|260837728|gb|EEX64405.1| cold shock protein CspG [Vibrio sp. RC341]
 gi|261890360|gb|EEY36347.1| cold shock protein CspG [Vibrio mimicus MB-451]
 gi|262023711|gb|EEY42411.1| cold shock protein CspG [Vibrio cholerae RC27]
 gi|262027164|gb|EEY45831.1| cold shock protein CspG [Vibrio mimicus VM223]
 gi|262028216|gb|EEY46874.1| cold shock protein CspG [Vibrio cholerae INDRE 91/1]
 gi|262034524|gb|EEY52864.1| cold shock protein CspG [Vibrio cholerae CT 5369-93]
 gi|262350846|gb|EEY99979.1| cold shock protein CspG [Vibrio sp. RC586]
 gi|297535351|gb|EFH74185.1| cold shock transcriptional regulator CspA [Vibrio cholerae RC385]
 gi|297542004|gb|EFH78055.1| cold shock transcriptional regulator CspA [Vibrio cholerae MAK
          757]
 gi|327485389|gb|AEA79795.1| Cold shock protein CspG [Vibrio cholerae LMA3894-4]
          Length = 70

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI+ +     G DVF+H  ++ S G   L EGQ V++   Q    G
Sbjct: 6  TGSVKWFNETKGFGFISQD---NGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQG-KKG 61

Query: 64 KYSAENLKL 72
            +A+   L
Sbjct: 62 PQAAQVTAL 70


>gi|85859293|ref|YP_461495.1| cold shock protein [Syntrophus aciditrophicus SB]
 gi|85722384|gb|ABC77327.1| cold shock protein [Syntrophus aciditrophicus SB]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI      + G DVF+H S++  AG   L E Q V ++  Q   
Sbjct: 1  MAQGRVKWFNDKKGFGFIE----NDEGGDVFVHFSSIQGAGWKTLNESQRVRFEIQQGQK 56

Query: 62 NGKYSAENLKLV 73
              SA N++L+
Sbjct: 57 G--PSAVNVELI 66


>gi|154247142|ref|YP_001418100.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
          autotrophicus Py2]
 gi|154161227|gb|ABS68443.1| putative cold-shock DNA-binding domain protein [Xanthobacter
          autotrophicus Py2]
          Length = 68

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI  +   E G DVF+H S V  +GL+ L +GQ V++D V  D 
Sbjct: 1  MATGTVKFFNSQKGFGFIQQD---EGGPDVFVHISDVERSGLYGLNDGQKVSFDIV-ADN 56

Query: 62 NGKYSAENLKLV 73
           GK  A NL  +
Sbjct: 57 RGKSKASNLAAL 68


>gi|152974668|ref|YP_001374185.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152023420|gb|ABS21190.1| putative cold-shock DNA-binding domain protein [Bacillus
          cytotoxicus NVH 391-98]
          Length = 67

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI        G DVF+H SA+ + G  +L EG+ V+++  +N 
Sbjct: 1  MTVTGQVKWFNNEKGFGFIE----VPGGSDVFVHFSAITTEGFKSLEEGEKVSFEI-ENG 55

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 56 NRGPQAKNVVKL 67


>gi|260775771|ref|ZP_05884667.1| putative cold-shock DNA-binding domain protein [Vibrio
          coralliilyticus ATCC BAA-450]
 gi|260608187|gb|EEX34356.1| putative cold-shock DNA-binding domain protein [Vibrio
          coralliilyticus ATCC BAA-450]
          Length = 70

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI P+       DVF+H  ++AS G   L EGQ V ++  Q    G
Sbjct: 6  TGSVKWFNETKGFGFIAPD---NGTADVFVHFRSIASDGFKTLAEGQKVAFNVEQGG-KG 61

Query: 64 KYSAENLKL 72
            +A+   L
Sbjct: 62 PQAADVTVL 70


>gi|160947736|ref|ZP_02094903.1| hypothetical protein PEPMIC_01671 [Parvimonas micra ATCC 33270]
 gi|158446870|gb|EDP23865.1| hypothetical protein PEPMIC_01671 [Parvimonas micra ATCC 33270]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
          +G++KW+N  KG+GFI    STE G+DVF+H SA+   G    L EGQ V ++ V+  A 
Sbjct: 2  KGTVKWFNAAKGFGFI----STEDGEDVFVHYSALEETGEFRTLDEGQAVEFEIVEG-AK 56

Query: 63 GKYSAENLKL 72
          G  ++  +KL
Sbjct: 57 GPQASGVVKL 66


>gi|145589930|ref|YP_001156527.1| cold-shock DNA-binding domain-containing protein
          [Polynucleobacter necessarius subsp. asymbioticus
          QLW-P1DMWA-1]
 gi|171464060|ref|YP_001798173.1| cold-shock DNA-binding domain protein [Polynucleobacter
          necessarius subsp. necessarius STIR1]
 gi|145048336|gb|ABP34963.1| cold-shock DNA-binding protein family [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|171193598|gb|ACB44559.1| cold-shock DNA-binding domain protein [Polynucleobacter
          necessarius subsp. necessarius STIR1]
          Length = 67

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+   E    +F H SA+   G   L E Q VT+D  Q   
Sbjct: 1  MATGIVKWFNDAKGFGFIKPDDGEEE---LFAHFSAITMPGFKTLKENQKVTFDITQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--KQATNIQ 65


>gi|51244785|ref|YP_064669.1| cold shock protein [Desulfotalea psychrophila LSv54]
 gi|50875822|emb|CAG35662.1| probable cold shock protein [Desulfotalea psychrophila LSv54]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  E     GDD+F+H +++ ++G   L EG  V++D  +   
Sbjct: 1  MAEGIVKWFNDAKGFGFIEQE----GGDDLFVHHTSINASGFKTLEEGARVSFDIEEGQ- 55

Query: 62 NGKYSAENLKL 72
           G  +A    L
Sbjct: 56 KGPAAANVTAL 66


>gi|310778654|ref|YP_003966987.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
 gi|309747977|gb|ADO82639.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFIT    +E G DVF H S +   G   L EG+ VT++  Q   
Sbjct: 1  MVKGTVKWFNGEKGFGFIT----SEEGTDVFAHFSEIQKDGFKTLEEGEQVTFEITQGQK 56

Query: 62 NGKYSAENLKLV 73
               A N+K V
Sbjct: 57 G--PQASNIKTV 66


>gi|27366952|ref|NP_762479.1| cold shock protein CspE [Vibrio vulnificus CMCP6]
 gi|37676727|ref|NP_937123.1| cold shock protein [Vibrio vulnificus YJ016]
 gi|320158831|ref|YP_004191209.1| cold shock protein CspE [Vibrio vulnificus MO6-24/O]
 gi|27358519|gb|AAO07469.1| Cold shock protein CspE [Vibrio vulnificus CMCP6]
 gi|37201270|dbj|BAC97093.1| cold shock protein [Vibrio vulnificus YJ016]
 gi|319934143|gb|ADV89006.1| cold shock protein CspE [Vibrio vulnificus MO6-24/O]
          Length = 69

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      E+G DVF H SA+   G   L EGQ V++   Q     
Sbjct: 6  TGTVKWFNETKGFGFI----KQENGPDVFAHFSAIKGDGFRTLAEGQKVSFVISQGQKG- 60

Query: 64 KYSAENLKLV 73
             AE + L+
Sbjct: 61 -PQAEEITLL 69


>gi|238794630|ref|ZP_04638236.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
 gi|238797908|ref|ZP_04641399.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
 gi|238718213|gb|EEQ10038.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969]
 gi|238726019|gb|EEQ17567.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 2  TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ENGAKG 57

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 58 PSAVNVVAL 66


>gi|77361881|ref|YP_341456.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Pseudoalteromonas haloplanktis
          TAC125]
 gi|77361882|ref|YP_341457.1| cold shock-like protein cspE, RNA chaperone, transcription
          antiterminator, affects expression of rpoS and uspA
          [Pseudoalteromonas haloplanktis TAC125]
 gi|76876792|emb|CAI88014.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Pseudoalteromonas haloplanktis
          TAC125]
 gi|76876793|emb|CAI88015.1| Cold shock-like protein cspE, RNA chaperone, transcription
          antiterminator, affects expression of rpoS and uspA
          [Pseudoalteromonas haloplanktis TAC125]
          Length = 69

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI  E    SG DVF H SA+ S G   L EGQ V +   Q     
Sbjct: 6  TGSVKWFNEAKGFGFIEQE----SGADVFAHFSAIVSDGFKTLAEGQRVQFTVTQGQKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -PQAENI 66


>gi|88703658|ref|ZP_01101374.1| cold shock DNA-binding domain protein [Congregibacter litoralis
          KT71]
 gi|88702372|gb|EAQ99475.1| cold shock DNA-binding domain protein [Congregibacter litoralis
          KT71]
          Length = 69

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      +SG DVF H SA+  +G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNESKGFGFIEQ----KSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  V
Sbjct: 61 -PQAENIVAV 69


>gi|254491849|ref|ZP_05105028.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
          thiooxidans DMS010]
 gi|224463327|gb|EEF79597.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
          thiooxydans DMS010]
          Length = 69

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI       SG DVF H SA+ S+G   L EGQ V +         
Sbjct: 6  TGTVKWFNEAKGFGFIEQ----ASGPDVFAHFSAIVSSGFKTLMEGQKVEFTVTTGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  V
Sbjct: 61 -PQAENIVAV 69


>gi|21224260|ref|NP_630039.1| cold-shock domain-containing protein [Streptomyces coelicolor
          A3(2)]
 gi|256784655|ref|ZP_05523086.1| cold-shock domain-containing protein [Streptomyces lividans TK24]
 gi|289768539|ref|ZP_06527917.1| cold-shock domain-containing protein [Streptomyces lividans TK24]
 gi|2815334|emb|CAA16458.1| cold-shock domain protein [Streptomyces coelicolor A3(2)]
 gi|91199666|emb|CAI78021.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|96771713|emb|CAI78295.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|117164258|emb|CAJ87800.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|126347370|emb|CAJ89078.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|289698738|gb|EFD66167.1| cold-shock domain-containing protein [Streptomyces lividans TK24]
          Length = 67

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|332993980|gb|AEF04035.1| putative Cold shock-like protein [Alteromonas sp. SN2]
          Length = 70

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GF+T +G    G DVF+H  ++AS G   L+EGQ V++   Q    G
Sbjct: 6  NGTVKWFNEDKGFGFLTQDG---GGKDVFVHFRSIASDGFKTLSEGQAVSFSVEQGQ-KG 61

Query: 64 KYSAENLKL 72
            +A  + L
Sbjct: 62 LQAANVVVL 70


>gi|284921457|emb|CBG34526.1| cold shock-like protein [Escherichia coli 042]
          Length = 70

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+NP+KG+GFITP    +   DVF+H SA+ S     LTE Q V +   +N   G
Sbjct: 6  TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQEVEFGI-ENGPKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PAAVHVVAL 70


>gi|260549563|ref|ZP_05823781.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          sp. RUH2624]
 gi|260407356|gb|EEX00831.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          sp. RUH2624]
          Length = 70

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  +    SG DVF H   +AS+G   L EGQ VT++ VQ     
Sbjct: 7  TGTVKWFNETKGFGFIQQD----SGPDVFAHFKEIASSGFKTLHEGQRVTFNVVQGQKG- 61

Query: 64 KYSAENL 70
            SA N+
Sbjct: 62 -PSATNI 67


>gi|119946712|ref|YP_944392.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119865316|gb|ABM04793.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G++KW+N  KG+GFI       SG DVF+H SA+AS G   L EGQ V +   Q    
Sbjct: 5  EQGTVKWFNEAKGFGFIEQ----ASGPDVFVHFSAIASEGFKTLAEGQKVEFSVSQGQKG 60

Query: 63 GK 64
           +
Sbjct: 61 PQ 62


>gi|312962742|ref|ZP_07777231.1| temperature acclimation protein b [Pseudomonas fluorescens WH6]
 gi|330811374|ref|YP_004355836.1| transcription factor, Csd family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|311283117|gb|EFQ61709.1| temperature acclimation protein b [Pseudomonas fluorescens WH6]
 gi|327379482|gb|AEA70832.1| Putative transcription factor, Csd family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 70

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59

Query: 62 NGKYSAENLK 71
               A+ ++
Sbjct: 60 G--MQADEVQ 67


>gi|308270407|emb|CBX27019.1| Major cold shock protein [uncultured Desulfobacterium sp.]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  KGYGFI  E    +G+DVF+H SA+  AG   L+EG+ VT+D  Q + 
Sbjct: 1  MANGIVKWFSNKKGYGFIEQE----NGEDVFVHHSAINGAGFKTLSEGEKVTFDIEQGEK 56

Query: 62 NGKYSAENLKLV 73
              +A N+  +
Sbjct: 57 G--PAAVNVTKL 66


>gi|330819200|ref|YP_004348062.1| Cold shock protein [Burkholderia gladioli BSR3]
 gi|327371195|gb|AEA62550.1| Cold shock protein [Burkholderia gladioli BSR3]
          Length = 67

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI P+ S +   D+F H S +   G  +L EGQ V+++      
Sbjct: 1  MDTGIVKWFNDSKGFGFIAPDNSKD---DLFAHFSEIRGDGFRSLVEGQRVSFETKMGPK 57

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 58 G--LQASNIKAL 67


>gi|227505644|ref|ZP_03935693.1| cold shock protein [Corynebacterium striatum ATCC 6940]
 gi|227197797|gb|EEI77845.1| cold shock protein [Corynebacterium striatum ATCC 6940]
          Length = 67

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N +KGYGFI  E   +   D+F+H S +   G   L E Q V+++  +   
Sbjct: 1  MAQGTVKFFNAEKGYGFIEME---DGSGDIFVHYSEIQGNGFRTLEENQKVSFEVAEGQK 57

Query: 62 NGKYSAENLKLV 73
               A+N+  +
Sbjct: 58 G--LQAQNVTAL 67


>gi|224369441|ref|YP_002603605.1| CspB1 [Desulfobacterium autotrophicum HRM2]
 gi|223692158|gb|ACN15441.1| CspB1 [Desulfobacterium autotrophicum HRM2]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  E    +G DVF+H S + + G  +L EG  V++D  +   
Sbjct: 1  MANGIVKWFNDSKGFGFIEQE----NGKDVFVHHSGINATGFKSLNEGDRVSFDIEEGPK 56

Query: 62 NGKYSAENLKLV 73
              SA N+ ++
Sbjct: 57 G--PSATNVTVI 66


>gi|160878802|ref|YP_001557770.1| cold-shock DNA-binding domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160427468|gb|ABX41031.1| cold-shock DNA-binding domain protein [Clostridium
          phytofermentans ISDg]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GF++     E G+DVF+H SA+   G   L EG+ V ++ V+ + 
Sbjct: 1  MKKGTVKWFNAKKGFGFLS----DEEGNDVFVHFSALNMDGFKVLEEGEAVAFEVVEGE- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 KGPQAANVTKL 66


>gi|77460616|ref|YP_350123.1| cold-shock DNA-binding protein [Pseudomonas fluorescens Pf0-1]
 gi|77384619|gb|ABA76132.1| major cold shock protein [Pseudomonas fluorescens Pf0-1]
          Length = 70

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59

Query: 62 N 62
           
Sbjct: 60 G 60


>gi|28199859|ref|NP_780173.1| temperature acclimation protein B [Xylella fastidiosa Temecula1]
 gi|71275239|ref|ZP_00651526.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon]
 gi|71899540|ref|ZP_00681696.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|71899925|ref|ZP_00682072.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|170731236|ref|YP_001776669.1| cold-shock DNA-binding domain-containing protein [Xylella
          fastidiosa M12]
 gi|182682610|ref|YP_001830770.1| cold-shock DNA-binding domain-containing protein [Xylella
          fastidiosa M23]
 gi|28057980|gb|AAO29822.1| temperature acclimation protein B [Xylella fastidiosa Temecula1]
 gi|71164048|gb|EAO13763.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon]
 gi|71730288|gb|EAO32372.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|71730669|gb|EAO32744.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1]
 gi|167966029|gb|ACA13039.1| putative cold-shock DNA-binding domain protein [Xylella
          fastidiosa M12]
 gi|182632720|gb|ACB93496.1| cold-shock DNA-binding domain protein [Xylella fastidiosa M23]
 gi|307578893|gb|ADN62862.1| temperature acclimation protein B [Xylella fastidiosa subsp.
          fastidiosa GB514]
          Length = 73

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFIT    + +G D+F+H  A+   G  +L EGQ V++  VQ   
Sbjct: 8  RQIGTVKWFNDNKGFGFIT----SNNGPDLFVHYRAIQGNGFKSLQEGQKVSFVAVQGQK 63

Query: 62 NGKYSAENLKLV 73
               A+ ++++
Sbjct: 64 G--MQADQVQVL 73


>gi|330447711|ref|ZP_08311359.1| cold shock protein CspG [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328491902|dbj|GAA05856.1| cold shock protein CspG [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 70

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          + G +KW+N +KG+GFIT +       DVF+H  A+ S G   L +GQ V++D  Q    
Sbjct: 5  NTGLVKWFNEEKGFGFITQD---NGAADVFVHFQAIVSDGFKTLMDGQKVSFDVEQGQ-K 60

Query: 63 GKYSAENLKL 72
          G  +A  + L
Sbjct: 61 GLQAANVVAL 70


>gi|239616519|ref|YP_002939841.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
          19.5.1]
 gi|239505350|gb|ACR78837.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF
          19.5.1]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFIT +     G+DVF+H S + S G   L EGQ V +D  +N   G
Sbjct: 2  KGTVKWFNAQKGYGFITRD----EGEDVFIHFSGIVSDGFKTLEEGQRVEFDI-ENGQKG 56

Query: 64 KYSAENLKLVP 74
             A N+K V 
Sbjct: 57 -AQAVNVKTVE 66


>gi|262275442|ref|ZP_06053252.1| putative Cold shock-like protein [Grimontia hollisae CIP 101886]
 gi|262220687|gb|EEY72002.1| putative Cold shock-like protein [Grimontia hollisae CIP 101886]
          Length = 68

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI  E    +G DVF+H  A+   G   L EGQ V ++  Q    G
Sbjct: 5  TGTVKWFNEEKGFGFIQQE----NGPDVFVHFRAITGEGFKTLAEGQQVAFEIEQGQ-KG 59

Query: 64 KYSAENLKL 72
            +A   K+
Sbjct: 60 PQAANVEKV 68


>gi|297568667|ref|YP_003690011.1| cold-shock DNA-binding domain protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296924582|gb|ADH85392.1| cold-shock DNA-binding domain protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 66

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +    SG DVF+H +A+   G  +L EG  V ++ V    
Sbjct: 1  MAEGTVKWFNDAKGFGFIAQD----SGSDVFVHHTAILGQGFKSLQEGARVEFEIVDGPK 56

Query: 62 NGKYSAENLK 71
              +A N++
Sbjct: 57 G--PAASNVR 64


>gi|307253880|ref|ZP_07535732.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|307260575|ref|ZP_07542267.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
 gi|306863084|gb|EFM95026.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|306869652|gb|EFN01437.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
          Length = 83

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP+   + G D+F+H S +  +    L EG  V ++ VQ+   G
Sbjct: 19 TGIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFE-VQDSERG 74

Query: 64 KYSAENLKLV 73
            SA N+K +
Sbjct: 75 P-SAVNVKTL 83


>gi|302760539|ref|XP_002963692.1| hypothetical protein SELMODRAFT_451445 [Selaginella
          moellendorffii]
 gi|300168960|gb|EFJ35563.1| hypothetical protein SELMODRAFT_451445 [Selaginella
          moellendorffii]
          Length = 184

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 44/67 (65%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P +G+GFITP+   +   D+F+H++++ + G  +L EG++V Y  V+   +G+
Sbjct: 17 GKVKWFSPTRGFGFITPD---DGSPDIFVHQTSIHAEGFRSLREGEIVEY-VVELGQDGR 72

Query: 65 YSAENLK 71
            A N+ 
Sbjct: 73 MRAGNVT 79


>gi|254514015|ref|ZP_05126076.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR5-3]
 gi|219676258|gb|EED32623.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR5-3]
          Length = 69

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      +SG DVF H SA+  +G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNESKGFGFIEQ----KSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  V
Sbjct: 61 -PQAENIVAV 69


>gi|49082348|gb|AAT50574.1| PA1159 [synthetic construct]
          Length = 70

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFI  +    SG DVF+H  A+   G  +L EGQ V +  +Q   
Sbjct: 4  REVGTVKWFNDAKGYGFIQRD----SGPDVFVHYRAIRGEGHRSLVEGQKVEFSVIQGQK 59

Query: 62 NGKYSAENLKLV 73
               AE++  V
Sbjct: 60 G--LQAEDVSKV 69


>gi|226330479|ref|ZP_03805997.1| hypothetical protein PROPEN_04397 [Proteus penneri ATCC 35198]
 gi|225201274|gb|EEG83628.1| hypothetical protein PROPEN_04397 [Proteus penneri ATCC 35198]
          Length = 70

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V++   +N   G
Sbjct: 6  TGTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDNFKTLAEGQQVSFTM-ENGMKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PAAGNVVAL 70


>gi|221134864|ref|ZP_03561167.1| cold-shock DNA-binding domain-containing protein [Glaciecola sp.
          HTCC2999]
          Length = 74

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI PE   +  +D+F H S +   G   L  GQ V YD VQ   
Sbjct: 1  MAIGKVKWFNNTKGFGFIVPE---DGNEDIFAHYSTIKMDGYRALKAGQSVHYDMVQGPK 57

Query: 62 NGKYSAENLKL 72
               AEN+ +
Sbjct: 58 G--LHAENISI 66


>gi|325916970|ref|ZP_08179212.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325536821|gb|EGD08575.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
          Length = 69

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQVGTVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++ V
Sbjct: 60 G--MQADQVQAV 69


>gi|71725897|gb|AAZ39067.1| cold shock protein [Exiguobacterium aurantiacum]
          Length = 67

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GFI  E     G DVF+H SA+ + G  +L EGQ V ++ V +   G 
Sbjct: 4  GIVKWFNLEKGFGFIEVE----GGKDVFVHFSAIQTDGYKSLDEGQEVEFEIV-DGERGP 58

Query: 65 YSAEN 69
           +A  
Sbjct: 59 QAANV 63


>gi|26249019|ref|NP_755059.1| cold shock-like protein cspI [Escherichia coli CFT073]
 gi|157161028|ref|YP_001458346.1| cold shock DNA-binding protein [Escherichia coli HS]
 gi|26109426|gb|AAN81629.1|AE016765_31 Cold shock-like protein cspI [Escherichia coli CFT073]
 gi|157066708|gb|ABV05963.1| cold shock DNA-binding protein [Escherichia coli HS]
 gi|315293040|gb|EFU52392.1| transcriptional repressor activity CueR [Escherichia coli MS
          153-1]
          Length = 71

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 1  MV---HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          M+     G +KW+NP+KG+GFITP    +   DVF+H SA+ S     LTE Q V +   
Sbjct: 1  MMSNKMTGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQEVEFGI- 56

Query: 58 QNDANGKYSAENLKL 72
          +N   G  +   + L
Sbjct: 57 ENGPKGPAAVHVVAL 71


>gi|50084495|ref|YP_046005.1| putative cold shock protein [Acinetobacter sp. ADP1]
 gi|49530471|emb|CAG68183.1| putative cold shock protein [Acinetobacter sp. ADP1]
          Length = 70

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G +KW+N  KG+GFI        GDDVF+H  A+   G  +L +GQ V +  VQ   
Sbjct: 4  REQGVVKWFNDTKGFGFIQ----RNGGDDVFVHFRAIMGDGHRSLRDGQRVEFSVVQGQK 59

Query: 62 NGKYSAENLKLV 73
             + AEN++ +
Sbjct: 60 G--FQAENVQPL 69


>gi|307132939|ref|YP_003884955.1| Cold shock protein [Dickeya dadantii 3937]
 gi|306530468|gb|ADN00399.1| Cold shock protein [Dickeya dadantii 3937]
          Length = 70

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFITP    +   DVF+H SA+ S     L EGQ V +  + N   G
Sbjct: 6  TGSVKWFNETKGFGFITP---ADGSKDVFVHFSAIQSDSFKTLYEGQKVEF-VIGNGPKG 61

Query: 64 KYSAENL 70
            SAEN+
Sbjct: 62 P-SAENV 67


>gi|92118615|ref|YP_578344.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91801509|gb|ABE63884.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 71

 Score = 94.2 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N ++GYGFI P+   + G DVF+H +AV  AGL  L+EGQ VT++   + 
Sbjct: 1  MSMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVEQAGLTELSEGQRVTFEVEPDK 57

Query: 61 ANGKYSAENLKL 72
                A NL +
Sbjct: 58 KGKGPKAVNLVI 69


>gi|238024869|ref|YP_002909101.1| Cold shock protein [Burkholderia glumae BGR1]
 gi|237879534|gb|ACR31866.1| Cold shock protein [Burkholderia glumae BGR1]
          Length = 67

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI+P+      DD+F H S +   G  +L EGQ V+++  +   
Sbjct: 1  MDTGIVKWFNDSKGFGFISPD---NGKDDLFAHFSEIRGDGFRSLAEGQRVSFE-TKVGQ 56

Query: 62 NGKYSAE 68
           G  +A 
Sbjct: 57 KGLQAAN 63


>gi|330936728|gb|EGH40913.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 105

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  +  D   
Sbjct: 38 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 92

Query: 64 KYSAENL 70
             AE++
Sbjct: 93 -LQAEDV 98


>gi|322420677|ref|YP_004199900.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
          M18]
 gi|320127064|gb|ADW14624.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
          Length = 66

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E    +GDDVF+H SA+   G  +L EG  VT++  +   
Sbjct: 1  MVNGTVKWFNDSKGFGFIEQE----NGDDVFVHFSAITGDGFKSLAEGDSVTFEVAKG-P 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 KGLQAANV 63


>gi|229591242|ref|YP_002873361.1| putative cold-shock protein [Pseudomonas fluorescens SBW25]
 gi|229363108|emb|CAY50116.1| putative cold-shock protein [Pseudomonas fluorescens SBW25]
          Length = 91

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KGYGFI  +G +E   D+F H SA+   G   L  GQ V+++ +Q      
Sbjct: 8  GKVKWFNNAKGYGFIIEDGKSE---DLFAHFSAIIMDGYKTLKAGQAVSFEIIQGPKG-- 62

Query: 65 YSAENLKLVPK 75
            A N+  V +
Sbjct: 63 LHAVNIDTVKE 73


>gi|153835791|ref|ZP_01988458.1| cold shock domain protein CspD [Vibrio harveyi HY01]
 gi|148867479|gb|EDL66854.1| cold shock domain protein CspD [Vibrio harveyi HY01]
          Length = 72

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +   E   D+F H S +   G   L  GQ V+Y+  +   
Sbjct: 1  MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYEI-EKGP 56

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 57 KGSHASSVVPI 67


>gi|258624846|ref|ZP_05719774.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603]
 gi|258582844|gb|EEW07665.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603]
          Length = 66

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI+ +     G DVF+H  ++ S G   L EGQ V++   Q    G
Sbjct: 2  TGSVKWFNETKGFGFISQD---NGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQG-KKG 57

Query: 64 KYSAENLKL 72
            +A+   L
Sbjct: 58 PQAAQVTAL 66


>gi|19551424|ref|NP_599426.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
 gi|62389068|ref|YP_224470.1| cold-shock protein CspA [Corynebacterium glutamicum ATCC 13032]
 gi|21322938|dbj|BAB97567.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032]
 gi|41324401|emb|CAF18741.1| COLD-SHOCK PROTEIN CSPA [Corynebacterium glutamicum ATCC 13032]
          Length = 67

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P    +   D+F+H S +  +G  NL E Q V ++  +   
Sbjct: 1  MAQGTVKWFNGEKGFGFIAP---NDGSADLFVHYSEIQGSGFRNLEENQPVEFEVGEGAK 57

Query: 62 NGKYSAENLKLV 73
               A+ ++ +
Sbjct: 58 G--PQAQQVRAL 67


>gi|116620045|ref|YP_822201.1| cold-shock DNA-binding protein family protein [Candidatus
          Solibacter usitatus Ellin6076]
 gi|116223207|gb|ABJ81916.1| cold-shock DNA-binding protein family [Candidatus Solibacter
          usitatus Ellin6076]
          Length = 67

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW+N  KG+GFI  E    +G+DVF+H SA++++G  +L EG  V++  V+  
Sbjct: 1  MRETGTVKWFNAGKGFGFIQRE----NGEDVFVHFSAISASGYRSLDEGARVSF-VVKKG 55

Query: 61 ANGKYSAENLK 71
            G   AE++ 
Sbjct: 56 PKG-LQAEDVS 65


>gi|119469734|ref|ZP_01612603.1| Cold shock protein [Alteromonadales bacterium TW-7]
 gi|119446981|gb|EAW28252.1| Cold shock protein [Alteromonadales bacterium TW-7]
          Length = 69

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI  E    SG DVF H SA++  G   L EGQ V +   Q     
Sbjct: 6  TGSVKWFNEAKGFGFIEQE----SGPDVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -PQAENI 66


>gi|28868485|ref|NP_791104.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|28851723|gb|AAO54799.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|331015230|gb|EGH95286.1| cold shock domain family protein [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 70

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59

Query: 62 N 62
           
Sbjct: 60 G 60


>gi|307546402|ref|YP_003898881.1| cold shock protein CspA [Halomonas elongata DSM 2581]
 gi|307218426|emb|CBV43696.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas
           elongata DSM 2581]
          Length = 154

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G +KW+N +KGYGFIT +    SG+DVF+H  A+   G   L EGQ V Y   +N+ 
Sbjct: 88  REIGEVKWFNVNKGYGFITRD----SGEDVFVHFRAIRGRGHRTLAEGQKVKYQVSRNER 143

Query: 62  NGKYSAENLKLV 73
                A+++ ++
Sbjct: 144 G--LQADDVTVI 153


>gi|197284851|ref|YP_002150723.1| cold shock protein [Proteus mirabilis HI4320]
 gi|194682338|emb|CAR42146.1| cold shock protein [Proteus mirabilis HI4320]
          Length = 70

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V++   +N   G
Sbjct: 6  TGTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDNFKTLAEGQQVSFTM-ENGMKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PAAGNVVAL 70


>gi|88798111|ref|ZP_01113698.1| Cold shock protein [Reinekea sp. MED297]
 gi|88779308|gb|EAR10496.1| Cold shock protein [Reinekea sp. MED297]
          Length = 153

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G +KW+N  KG+GF+T +    +G+DVF+H  ++   G  +L EGQ V +  V++  
Sbjct: 85  REEGLVKWFNVSKGFGFVTRD----NGEDVFVHFRSIRGRGHRSLQEGQRVRFGVVESSK 140

Query: 62  NGKYSAENLKLVPK 75
                AE++ +V +
Sbjct: 141 G--LQAEDVTIVRQ 152


>gi|260438024|ref|ZP_05791840.1| cold shock protein [Butyrivibrio crossotus DSM 2876]
 gi|292809503|gb|EFF68708.1| cold shock protein [Butyrivibrio crossotus DSM 2876]
          Length = 66

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++KW+N  KG+GFI    S E+G D+F+H S +   G   L EGQ V ++      
Sbjct: 1  MNKGTVKWFNDQKGFGFI----SDENGKDIFVHFSGIVMDGHKKLEEGQKVEFEVADGAK 56

Query: 62 NGKYSAENLKLV 73
               A N+K++
Sbjct: 57 G--PQAVNVKVI 66


>gi|148263031|ref|YP_001229737.1| cold-shock DNA-binding domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146396531|gb|ABQ25164.1| cold-shock DNA-binding protein family [Geobacter uraniireducens
          Rf4]
          Length = 68

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GF+  E    +G+DVF+H SA+   G  +L EG  VT++  +   
Sbjct: 3  MEKGKVKWFNDSKGFGFLEQE----NGEDVFVHFSAITGDGFKSLNEGDNVTFEVTKG-P 57

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 58 KGLQAANVTRV 68


>gi|56461593|ref|YP_156874.1| cold shock protein [Idiomarina loihiensis L2TR]
 gi|56180603|gb|AAV83325.1| Cold shock protein [Idiomarina loihiensis L2TR]
          Length = 69

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI  E    +G DVF H SA++S G   LTEGQ V +   Q     
Sbjct: 6  TGSVKWFNEAKGFGFIERE----NGADVFAHFSAISSDGFKTLTEGQRVEFAVTQGPKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -PQAENI 66


>gi|13472374|ref|NP_103941.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|14023120|dbj|BAB49727.1| probable cold shock protein [Mesorhizobium loti MAFF303099]
          Length = 68

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K+YN  KG+GFI P    + G DVF+H SA+  AG   L EGQ + +D  + D 
Sbjct: 1  MTTGIVKFYNGQKGFGFIQP---ADGGKDVFVHVSALERAGFPGLAEGQKLQFDL-ERDG 56

Query: 62 NGKYSAENLKLV 73
           G+ SA NL+L+
Sbjct: 57 KGRESAANLQLI 68


>gi|300855138|ref|YP_003780122.1| cold-shock protein [Clostridium ljungdahlii DSM 13528]
 gi|300435253|gb|ADK15020.1| cold-shock protein [Clostridium ljungdahlii DSM 13528]
          Length = 65

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT     E G D+F H S + S G   L EGQ V+YD  Q     
Sbjct: 2  NGTVKWFNGEKGFGFIT----GEDGKDIFAHFSQINSDGYKTLEEGQKVSYDEGQGQKG- 56

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 57 -PQAENITVL 65


>gi|227356923|ref|ZP_03841300.1| CspA family cold shock transcriptional regulator [Proteus
          mirabilis ATCC 29906]
 gi|227162921|gb|EEI47871.1| CspA family cold shock transcriptional regulator [Proteus
          mirabilis ATCC 29906]
          Length = 70

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V++   +N   G
Sbjct: 6  TGTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDSFKTLAEGQQVSFTM-ENGMKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PAAGNVVAL 70


>gi|225390644|ref|ZP_03760368.1| hypothetical protein CLOSTASPAR_04399 [Clostridium asparagiforme
          DSM 15981]
 gi|225043262|gb|EEG53508.1| hypothetical protein CLOSTASPAR_04399 [Clostridium asparagiforme
          DSM 15981]
          Length = 65

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI+     E G+DVF+H S +   G  +L EG  V +D V N A G
Sbjct: 2  KGTVKWFNNQKGYGFIS----DEQGNDVFVHYSGLNMDGFKSLDEGAAVEFDVV-NGAKG 56

Query: 64 KYSAENLKL 72
            +    KL
Sbjct: 57 PQATNVTKL 65


>gi|197117779|ref|YP_002138206.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|197087139|gb|ACH38410.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
          Length = 66

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  E    +GDDVF H SA+   G  +L EG  VT+D V+   
Sbjct: 1  MANGTVKWFNDSKGFGFLEQE----NGDDVFCHFSAITGEGFKSLVEGDSVTFDVVRG-P 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGLQAANVTRV 66


>gi|119946183|ref|YP_943863.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119864787|gb|ABM04264.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G++KW+N  KG+GFI       SG DVF H SA+AS G   L EGQ V +   Q    
Sbjct: 5  EQGTVKWFNEAKGFGFIEQ----ASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKG 60

Query: 63 GK 64
           +
Sbjct: 61 PQ 62


>gi|305680386|ref|ZP_07403194.1| cold shock protein CspA [Corynebacterium matruchotii ATCC 14266]
 gi|305659917|gb|EFM49416.1| cold shock protein CspA [Corynebacterium matruchotii ATCC 14266]
          Length = 68

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H S +   G   L E Q+V ++      
Sbjct: 1  MAKGTVKWFNAEKGFGFIEPE---DGSADVFVHYSEINGDGFRYLEEDQVVEFEV--GGG 55

Query: 62 NGKYSAENLKLV 73
               A N++++
Sbjct: 56 AKGTQALNVRVI 67


>gi|66045400|ref|YP_235241.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|289673296|ref|ZP_06494186.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae FF5]
 gi|302187611|ref|ZP_07264284.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae 642]
 gi|63256107|gb|AAY37203.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|330898081|gb|EGH29500.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          japonica str. M301072PT]
 gi|330951864|gb|EGH52124.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7]
 gi|330973953|gb|EGH74019.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 70

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ VT+   +   
Sbjct: 4  RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDGFKSLKEGQTVTFVAAKGQK 60

Query: 62 NGKYSAENLKL 72
               AE +++
Sbjct: 61 G--MQAEEVQV 69


>gi|238758372|ref|ZP_04619550.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
 gi|238703495|gb|EEP96034.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
          Length = 66

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +   ++ A G
Sbjct: 2  TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ESGAKG 57

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 58 PSAVNVVAL 66


>gi|312796301|ref|YP_004029223.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
 gi|312168076|emb|CBW75079.1| Cold shock protein [Burkholderia rhizoxinica HKI 454]
          Length = 72

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+     G+D+F H S V   G   L E Q V+Y   +   
Sbjct: 6  MDTGIVKWFNDSKGFGFITPDA---GGEDLFAHFSEVTGEGFKTLVENQRVSYQVKRGPK 62

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 63 G--LQAANIKPL 72


>gi|126642302|ref|YP_001085286.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978]
 gi|169633000|ref|YP_001706736.1| putative cold shock protein [Acinetobacter baumannii SDF]
 gi|169795349|ref|YP_001713142.1| putative cold shock protein [Acinetobacter baumannii AYE]
 gi|184158782|ref|YP_001847121.1| cold shock protein [Acinetobacter baumannii ACICU]
 gi|213158664|ref|YP_002319962.1| cold-shock domain protein [Acinetobacter baumannii AB0057]
 gi|215482883|ref|YP_002325086.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
 gi|226952983|ref|ZP_03823447.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|239502878|ref|ZP_04662188.1| Cold shock-like protein cspG [Acinetobacter baumannii AB900]
 gi|260550926|ref|ZP_05825132.1| cold-shock domain-containing protein [Acinetobacter sp. RUH2624]
 gi|260554463|ref|ZP_05826684.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
 gi|262278446|ref|ZP_06056231.1| cold shock domain-containing protein CspD [Acinetobacter
          calcoaceticus RUH2202]
 gi|293609548|ref|ZP_06691850.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|294650565|ref|ZP_06727922.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC
          19194]
 gi|299769391|ref|YP_003731417.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
 gi|301348039|ref|ZP_07228780.1| Cold shock-like protein cspG [Acinetobacter baumannii AB056]
 gi|301510877|ref|ZP_07236114.1| Cold shock-like protein cspG [Acinetobacter baumannii AB058]
 gi|301596796|ref|ZP_07241804.1| Cold shock-like protein cspG [Acinetobacter baumannii AB059]
 gi|332850461|ref|ZP_08432781.1| cold shock-like protein CspG [Acinetobacter baumannii 6013150]
 gi|332871913|ref|ZP_08440325.1| cold shock-like protein CspG [Acinetobacter baumannii 6013113]
 gi|332875151|ref|ZP_08442984.1| cold shock-like protein CspG [Acinetobacter baumannii 6014059]
 gi|126388186|gb|ABO12684.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978]
 gi|169148276|emb|CAM86141.1| putative cold shock protein [Acinetobacter baumannii AYE]
 gi|169151792|emb|CAP00613.1| putative cold shock protein [Acinetobacter baumannii]
 gi|183210376|gb|ACC57774.1| Cold shock protein [Acinetobacter baumannii ACICU]
 gi|213057824|gb|ACJ42726.1| cold-shock domain protein [Acinetobacter baumannii AB0057]
 gi|213988402|gb|ACJ58701.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
 gi|226836304|gb|EEH68687.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|260406053|gb|EEW99539.1| cold-shock domain-containing protein [Acinetobacter sp. RUH2624]
 gi|260411005|gb|EEX04302.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
 gi|262258797|gb|EEY77530.1| cold shock domain-containing protein CspD [Acinetobacter
          calcoaceticus RUH2202]
 gi|292823562|gb|EFF82408.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC
          19194]
 gi|292828000|gb|EFF86363.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298699479|gb|ADI90044.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
 gi|322507405|gb|ADX02859.1| cold shock protein [Acinetobacter baumannii 1656-2]
 gi|323518697|gb|ADX93078.1| cold shock protein [Acinetobacter baumannii TCDC-AB0715]
 gi|325122817|gb|ADY82340.1| putative cold shock protein [Acinetobacter calcoaceticus PHEA-2]
 gi|332730732|gb|EGJ62043.1| cold shock-like protein CspG [Acinetobacter baumannii 6013150]
 gi|332731127|gb|EGJ62428.1| cold shock-like protein CspG [Acinetobacter baumannii 6013113]
 gi|332736595|gb|EGJ67589.1| cold shock-like protein CspG [Acinetobacter baumannii 6014059]
          Length = 70

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G +KW+N  KG+GFI        GDDVF+H  A+   G  +L +GQ V +  VQ   
Sbjct: 4  REQGVVKWFNDTKGFGFIQ----RNGGDDVFVHFRAIVGDGHRSLRDGQRVEFSVVQGQK 59

Query: 62 NGKYSAENLKLV 73
             + AEN++ +
Sbjct: 60 G--FQAENVQPL 69


>gi|269960957|ref|ZP_06175326.1| cold shock-like protein CspD [Vibrio harveyi 1DA3]
 gi|269834176|gb|EEZ88266.1| cold shock-like protein CspD [Vibrio harveyi 1DA3]
          Length = 72

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +   E   D+F H S +   G   L  GQ V+Y+ V+   
Sbjct: 1  MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYE-VEKGP 56

Query: 62 NGKYSAENLKL 72
           G +++  + +
Sbjct: 57 KGSHASSVVPV 67


>gi|302523740|ref|ZP_07276082.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
 gi|302432635|gb|EFL04451.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
          Length = 67

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI  +G      DVF+H S +   G   L E Q V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFIAQDGGE---GDVFVHYSEIEGRGFRTLEENQRVEFEVGQGQK 57

Query: 62 NGKYS 66
            +  
Sbjct: 58 GPQAQ 62


>gi|254492585|ref|ZP_05105756.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
          thiooxidans DMS010]
 gi|224462106|gb|EEF78384.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga
          thiooxydans DMS010]
          Length = 69

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI        G DVF+H +A+ S G   L EGQ VT +  Q     
Sbjct: 6  TGTVKWFNDAKGFGFIEQ----VDGPDVFVHHTAIKSEGFRTLKEGQAVTMEVTQGQKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -PQAENV 66


>gi|50121397|ref|YP_050564.1| cold shock protein [Pectobacterium atrosepticum SCRI1043]
 gi|227328628|ref|ZP_03832652.1| cold shock protein [Pectobacterium carotovorum subsp. carotovorum
          WPP14]
 gi|261821404|ref|YP_003259510.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
 gi|49611923|emb|CAG75372.1| cold shock protein [Pectobacterium atrosepticum SCRI1043]
 gi|261605417|gb|ACX87903.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
          Length = 70

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP+       DVF+H SA+ S     L EGQ V +   +N   G
Sbjct: 6  TGLVKWFDAGKGFGFITPD---NGSKDVFVHFSAIQSNDFKTLDEGQKVEFTI-ENGQKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAGNVVAL 70


>gi|194366422|ref|YP_002029032.1| cold-shock DNA-binding domain-containing protein
          [Stenotrophomonas maltophilia R551-3]
 gi|194349226|gb|ACF52349.1| cold-shock DNA-binding domain protein [Stenotrophomonas
          maltophilia R551-3]
          Length = 69

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFI+     ++G+DVF+H  A+ + G  +L EGQ V+++ VQ   
Sbjct: 4  RETGTVKWFNDAKGFGFIS----RQNGEDVFVHFRAIETQGFKSLKEGQAVSFEVVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++ V
Sbjct: 60 G--LQADKVQPV 69


>gi|315282229|ref|ZP_07870683.1| conserved domain protein [Listeria marthii FSL S4-120]
 gi|313614131|gb|EFR87821.1| conserved domain protein [Listeria marthii FSL S4-120]
          Length = 66

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K  N +KG+GFI  E    +GDDVF+H SA+   G  +L EGQ VT+D V+   
Sbjct: 1  MEQGTVKNPNAEKGFGFIERE----NGDDVFVHFSAIQGDGFKSLDEGQAVTFD-VEEGQ 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGPQAANVQK 65


>gi|1706172|sp|P54584|CSP_ARTGO RecName: Full=Cold shock protein
 gi|758663|gb|AAB81323.1| cold shock protein [Arthrobacter globiformis]
          Length = 67

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFITP+ S     DVF+H S + + G   L E   V ++  Q   
Sbjct: 1  MAQGTVKWFNAEKGFGFITPDDSD---GDVFVHYSEIQTGGFKTLDENARVQFEIGQGAK 57

Query: 62 NGKYSAENLKLV 73
               A  + LV
Sbjct: 58 G--PQATGVTLV 67


>gi|322433221|ref|YP_004210442.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321165613|gb|ADW71315.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 83

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KGYGF+      E G DVF+H S++   G   L EG  V +D +Q +   +
Sbjct: 6  GEVKWFNNAKGYGFL----GREGGPDVFVHYSSIQLDGYKTLKEGDPVEFDIIQGNKGPQ 61


>gi|110833014|ref|YP_691873.1| cold-shock protein [Alcanivorax borkumensis SK2]
 gi|254427611|ref|ZP_05041318.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
 gi|110646125|emb|CAL15601.1| cold-shock protein [Alcanivorax borkumensis SK2]
 gi|196193780|gb|EDX88739.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
          Length = 68

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GF+  E    +G DVF H SA+  +G   L EGQ V +   Q     
Sbjct: 5  KGTVKWFNEAKGFGFLEQE----NGPDVFAHFSAITGSGFKTLAEGQAVEFTVTQGPKG- 59

Query: 64 KYSAENL 70
             AEN+
Sbjct: 60 -PQAENI 65


>gi|90021439|ref|YP_527266.1| cold-shock DNA-binding protein family protein [Saccharophagus
          degradans 2-40]
 gi|89951039|gb|ABD81054.1| cold-shock DNA-binding protein family [Saccharophagus degradans
          2-40]
          Length = 75

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTE-SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          +G++KW+N  +GYGFIT   + E  GDD+F+H  ++   G  +L EGQ V +   Q D  
Sbjct: 6  KGTVKWFNNARGYGFITAGATEEKEGDDIFVHYRSIRGEGYKSLNEGQAVEFSLQQGDKG 65

Query: 63 GKYSAENLKLV 73
            + A+++ L+
Sbjct: 66 --FHADDVALI 74


>gi|28869573|ref|NP_792192.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|71734745|ref|YP_274352.1| cold shock protein CapA [Pseudomonas syringae pv. phaseolicola
          1448A]
 gi|213970497|ref|ZP_03398624.1| cold shock protein CapA [Pseudomonas syringae pv. tomato T1]
 gi|237801017|ref|ZP_04589478.1| cold shock protein CapA [Pseudomonas syringae pv. oryzae str.
          1_6]
 gi|257486174|ref|ZP_05640215.1| cold shock protein CapA [Pseudomonas syringae pv. tabaci ATCC
          11528]
 gi|289623638|ref|ZP_06456592.1| cold shock protein CapA [Pseudomonas syringae pv. aesculi str.
          NCPPB3681]
 gi|289647144|ref|ZP_06478487.1| cold shock protein CapA [Pseudomonas syringae pv. aesculi str.
          2250]
 gi|298486699|ref|ZP_07004756.1| cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB
          3335]
 gi|301384172|ref|ZP_07232590.1| cold shock protein CapA [Pseudomonas syringae pv. tomato Max13]
 gi|302063987|ref|ZP_07255528.1| cold shock protein CapA [Pseudomonas syringae pv. tomato K40]
 gi|302132645|ref|ZP_07258635.1| cold shock protein CapA [Pseudomonas syringae pv. tomato NCPPB
          1108]
 gi|28852815|gb|AAO55887.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|71555298|gb|AAZ34509.1| cold shock protein CapA [Pseudomonas syringae pv. phaseolicola
          1448A]
 gi|213924668|gb|EEB58236.1| cold shock protein CapA [Pseudomonas syringae pv. tomato T1]
 gi|298158782|gb|EFH99845.1| cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB
          3335]
 gi|320324300|gb|EFW80379.1| cold shock protein CapA [Pseudomonas syringae pv. glycinea str.
          B076]
 gi|320328578|gb|EFW84580.1| cold shock protein CapA [Pseudomonas syringae pv. glycinea str.
          race 4]
 gi|330888313|gb|EGH20974.1| cold shock protein CapA [Pseudomonas syringae pv. mori str.
          301020]
 gi|331016141|gb|EGH96197.1| cold shock protein CapA [Pseudomonas syringae pv. lachrymans str.
          M302278PT]
 gi|331023874|gb|EGI03931.1| cold shock protein CapA [Pseudomonas syringae pv. oryzae str.
          1_6]
          Length = 70

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ V++   +   
Sbjct: 4  RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSFVAAKGQK 60

Query: 62 NGKYSAENLKL 72
               AE +++
Sbjct: 61 G--MQAEQVRV 69


>gi|294633715|ref|ZP_06712273.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292830357|gb|EFF88708.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 67

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S ++  G   L EG+ VT+D  Q   
Sbjct: 1  MASGTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNISGNGYRELVEGEPVTFDVTQGQK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PQAENI 64


>gi|311693752|gb|ADP96625.1| cold shock, CspA [marine bacterium HP15]
          Length = 76

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT E    SG DVF+H SA+   G   L EGQ V +   Q     
Sbjct: 13 TGNVKFFNEAKGFGFITRE----SGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKG- 67

Query: 64 KYSAENL 70
             AEN+
Sbjct: 68 -PQAENV 73


>gi|298505030|gb|ADI83753.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
          KN400]
          Length = 66

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GF+  E    +G DVF+H SA+  +G  +L EG+ VT+D V N  
Sbjct: 1  MAKGRVKWFNDSKGFGFLEQE----NGVDVFVHFSAITGSGFKSLAEGEEVTFDVV-NGP 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 KGLQAANVCKL 66


>gi|322420218|ref|YP_004199441.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
          M18]
 gi|320126605|gb|ADW14165.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
          Length = 66

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  E    +G+DVF H SA+   G  +L EG  VT+D V+   
Sbjct: 1  MANGTVKWFNDSKGFGFLEQE----NGEDVFCHFSAITGDGFKSLAEGDRVTFDLVKG-P 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 KGLQAANVKKI 66


>gi|94499152|ref|ZP_01305690.1| putative cold-shock DNA-binding domain protein [Oceanobacter sp.
          RED65]
 gi|94428784|gb|EAT13756.1| putative cold-shock DNA-binding domain protein [Oceanobacter sp.
          RED65]
          Length = 68

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI  +     G DVF+H SA+  +G   L EGQ VT    Q     
Sbjct: 5  TGTVKWFNDEKGFGFIQQD----GGKDVFVHYSAIQGSGRRTLAEGQQVTMTVTQGQKG- 59

Query: 64 KYSAENLK 71
             AE+++
Sbjct: 60 -LQAEDVE 66


>gi|325273425|ref|ZP_08139677.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
 gi|324101438|gb|EGB99032.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
          Length = 86

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGF+  EG  +   D+F H SA+   G   L  GQ VT+D +Q   
Sbjct: 1  MASGKVKWFNNAKGYGFVNEEGKND---DLFAHYSAIQMDGYKTLKAGQAVTFDVIQGPK 57

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 58 G--LHAVNI 64


>gi|73538776|ref|YP_299143.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72122113|gb|AAZ64299.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 67

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H SA+  AG  +L EGQ V Y       
Sbjct: 1  METGTVKWFNDAKGFGFITPDA---GGNDLFAHFSAIEGAGFKSLKEGQKVRY-VKAMGQ 56

Query: 62 NGKYS 66
           G+ +
Sbjct: 57 KGEQA 61


>gi|300719018|ref|YP_003743821.1| Cold-shock DNA-binding domain protein [Erwinia billingiae Eb661]
 gi|299064854|emb|CAX61974.1| Cold-shock DNA-binding domain protein [Erwinia billingiae Eb661]
          Length = 70

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   DVF+H SA+ S     L EGQ V +  V+N A G
Sbjct: 6  TGLVKWFNADKGFGFISP---QDGSKDVFVHFSAIQSNDFKTLDEGQTVQFS-VENGAKG 61

Query: 64 KYSAENL 70
            +   +
Sbjct: 62 PSAVNVI 68


>gi|226945960|ref|YP_002801033.1| Cold-shock-like protein [Azotobacter vinelandii DJ]
 gi|226720887|gb|ACO80058.1| Cold-shock-like protein [Azotobacter vinelandii DJ]
          Length = 69

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFI  E    SG DVF+H  A+   G  +L EGQ V +  +Q   
Sbjct: 4  REVGTVKWFNDAKGYGFIQRE----SGPDVFVHYRAIRGEGHRSLIEGQKVEFSVIQGQK 59

Query: 62 NGKYSAENLK 71
               AE++ 
Sbjct: 60 G--LQAEDVS 67


>gi|32034585|ref|ZP_00134741.1| COG1278: Cold shock proteins [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|126207606|ref|YP_001052831.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae
          L20]
 gi|165975574|ref|YP_001651167.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
          3 str. JL03]
 gi|190149388|ref|YP_001967913.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|303249822|ref|ZP_07336026.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
          6 str. Femo]
 gi|303251942|ref|ZP_07338113.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
          2 str. 4226]
 gi|307244926|ref|ZP_07527023.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|307247101|ref|ZP_07529153.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
 gi|307249322|ref|ZP_07531316.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|307251645|ref|ZP_07533550.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|307256143|ref|ZP_07537930.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|307258334|ref|ZP_07540075.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
 gi|307262705|ref|ZP_07544333.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
 gi|126096398|gb|ABN73226.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae
          serovar 5b str. L20]
 gi|165875675|gb|ABY68723.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
          3 str. JL03]
 gi|189914519|gb|ACE60771.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|302649372|gb|EFL79557.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
          2 str. 4226]
 gi|302651389|gb|EFL81541.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar
          6 str. Femo]
 gi|306854091|gb|EFM86299.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|306856350|gb|EFM88501.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
 gi|306858616|gb|EFM90678.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|306860842|gb|EFM92850.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|306865324|gb|EFM97220.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|306867518|gb|EFM99365.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
 gi|306871960|gb|EFN03676.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
          Length = 69

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP+   + G D+F+H S +  +    L EG  V ++ VQ+   G
Sbjct: 5  TGIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFE-VQDSERG 60

Query: 64 KYSAENLKLV 73
            SA N+K +
Sbjct: 61 P-SAVNVKTL 69


>gi|227111587|ref|ZP_03825243.1| cold shock protein [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
 gi|253688227|ref|YP_003017417.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|251754805|gb|ACT12881.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
          Length = 70

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP+       DVF+H SA+ S     L EGQ V +   +N   G
Sbjct: 6  TGLVKWFDAGKGFGFITPD---NGSKDVFVHFSAIQSNDFKTLDEGQKVEFTI-ENGQKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PAAGNVVAL 70


>gi|119946714|ref|YP_944394.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119865318|gb|ABM04795.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G++KW+N  KG+GFI       SG DVF+H SA+AS G   L EGQ V +   Q    
Sbjct: 5  EQGTVKWFNEAKGFGFIEQ----ASGPDVFVHFSAIASEGFKTLAEGQKVEFTVSQGQKG 60

Query: 63 GK 64
           +
Sbjct: 61 PQ 62


>gi|91775541|ref|YP_545297.1| cold-shock DNA-binding protein family protein [Methylobacillus
          flagellatus KT]
 gi|91709528|gb|ABE49456.1| cold-shock DNA-binding protein family [Methylobacillus
          flagellatus KT]
          Length = 68

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
          +  G +KW+N  KG+GFITP+   E G D+F H SA+ +  G  +L E Q V++D   + 
Sbjct: 1  MATGIVKWFNDSKGFGFITPD---EGGSDLFAHFSAIVNEGGYKSLAENQRVSFDVT-DG 56

Query: 61 ANGKYSAENLK 71
            GK  A N+K
Sbjct: 57 PKGKQ-ASNIK 66


>gi|88706396|ref|ZP_01104101.1| Cold shock protein [Congregibacter litoralis KT71]
 gi|88699332|gb|EAQ96446.1| Cold shock protein [Congregibacter litoralis KT71]
          Length = 68

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E     G DVF+H SA+   G   LT+GQ V +    +   G
Sbjct: 5  TGTVKWFNESKGFGFIERE----GGPDVFVHFSAIKGDGFKTLTDGQKVEFTVT-DGQKG 59

Query: 64 KYSAENLKL 72
            + + + +
Sbjct: 60 PQAEDVVAV 68


>gi|163801267|ref|ZP_02195166.1| cold-shock DNA-binding domain protein [Vibrio sp. AND4]
 gi|159174756|gb|EDP59556.1| cold-shock DNA-binding domain protein [Vibrio sp. AND4]
          Length = 70

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFITP+     G D+F+H  ++AS G   LTEGQ V+++  Q +   
Sbjct: 6  TGSVKWFNESKGFGFITPD---NGGSDLFVHFKSIASEGFKTLTEGQKVSFNVEQGNKG- 61

Query: 64 KYSAENLK 71
             A N+ 
Sbjct: 62 -PQAGNVT 68


>gi|51246052|ref|YP_065936.1| cold-shock protein [Desulfotalea psychrophila LSv54]
 gi|50877089|emb|CAG36929.1| probable cold-shock protein [Desulfotalea psychrophila LSv54]
          Length = 66

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E     G DVF+H SA+   G  +LTEG  V ++ + +  
Sbjct: 1  MAEGTVKWFNDAKGFGFIEQE----GGQDVFVHYSAIGGEGFKSLTEGSRVNFEII-DGP 55

Query: 62 NGKYSAENLK 71
           G  +   LK
Sbjct: 56 KGPAADNVLK 65


>gi|13625473|gb|AAK35071.1|AF363392_1 cold acclimation protein CapB [Pseudomonas sp. 30/3]
          Length = 69

 Score = 93.9 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITP    +SGDD+F+H  A+ S G  +L EGQ V++   +   
Sbjct: 4  RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIPSDGFKSLKEGQQVSFIATRGQK 59

Query: 62 NGKYSAENLKLV 73
               AE ++++
Sbjct: 60 G--MQAEEVQVI 69


>gi|2493773|sp|P72192|TAPB_PSEFR RecName: Full=Temperature acclimation protein B; AltName:
          Full=E8.0
 gi|1513086|gb|AAC46000.1| temperature acclimation protein B [Pseudomonas fragi]
          Length = 63

 Score = 93.9 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59

Query: 62 N 62
           
Sbjct: 60 G 60


>gi|302546770|ref|ZP_07299112.1| putative cold shock protein [Streptomyces hygroscopicus ATCC
          53653]
 gi|302464388|gb|EFL27481.1| putative cold shock protein [Streptomyces himastatinicus ATCC
          53653]
          Length = 67

 Score = 93.9 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--LTAENI 64


>gi|119944064|ref|YP_941744.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119862668|gb|ABM02145.1| cold shock protein E (CspE) [Psychromonas ingrahamii 37]
          Length = 68

 Score = 93.9 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI       SG DVF H SA++S G   L EGQ V +   Q     
Sbjct: 5  QGTVKWFNESKGFGFIEQ----ASGPDVFAHFSAISSEGFKTLAEGQKVEFTITQGQKG- 59

Query: 64 KYSAENLKLV 73
            +AEN+  +
Sbjct: 60 -PNAENIVAI 68


>gi|148547058|ref|YP_001267160.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida F1]
 gi|148511116|gb|ABQ77976.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
          Length = 88

 Score = 93.9 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  EG ++   D+F H SA+   G   L  GQ V +D VQ   
Sbjct: 1  MASGKVKWFNNAKGYGFINEEGKSD---DLFAHYSAIRMDGYKTLKAGQAVVFDIVQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|257469649|ref|ZP_05633741.1| cold-shock domain-contain protein [Fusobacterium ulcerans ATCC
          49185]
 gi|317063885|ref|ZP_07928370.1| cold-shock DNA-binding domain-containing protein [Fusobacterium
          ulcerans ATCC 49185]
 gi|313689561|gb|EFS26396.1| cold-shock DNA-binding domain-containing protein [Fusobacterium
          ulcerans ATCC 49185]
          Length = 66

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI+     E G+D F+H S + S G  +L EGQ VT++  + + 
Sbjct: 1  MLKGTVKWFNKDKGFGFIS----GEDGNDYFVHYSNINSKGFRSLEEGQAVTFEVTEGNK 56

Query: 62 NGKYSAENLKL 72
               A N+ +
Sbjct: 57 G--PVASNVTV 65


>gi|160938316|ref|ZP_02085671.1| hypothetical protein CLOBOL_03212 [Clostridium bolteae ATCC
          BAA-613]
 gi|158438689|gb|EDP16446.1| hypothetical protein CLOBOL_03212 [Clostridium bolteae ATCC
          BAA-613]
          Length = 65

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI+     E G+DVF+H S +   G  +L EG  V +D V N A G
Sbjct: 2  KGTVKWFNNQKGYGFIS----DEQGNDVFVHYSGLNMDGFKSLDEGAEVEFDVV-NGAKG 56

Query: 64 KYSAENLKL 72
            +    KL
Sbjct: 57 PQATNVTKL 65


>gi|94313078|ref|YP_586287.1| cold-shock DNA-binding domain-containing protein [Cupriavidus
          metallidurans CH34]
 gi|93356930|gb|ABF11018.1| cold-shock DNA-binding domain protein, anti-terminator of
          transcription [Cupriavidus metallidurans CH34]
          Length = 67

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H SA+   G  +L EGQ V Y       
Sbjct: 1  METGTVKWFNDAKGFGFITPDA---GGNDLFAHFSAIEGNGFKSLKEGQKVRY-VKAMGQ 56

Query: 62 NGKYS 66
           G+ +
Sbjct: 57 KGEQA 61


>gi|227549517|ref|ZP_03979566.1| cold shock protein Csp [Corynebacterium lipophiloflavum DSM
          44291]
 gi|227078394|gb|EEI16357.1| cold shock protein Csp [Corynebacterium lipophiloflavum DSM
          44291]
          Length = 67

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI P    +   DVF+H S +  +G  NL E Q V Y  V   A
Sbjct: 1  MAQGTVKWFNGDKGFGFIAP---NDGSTDVFVHFSEIQGSGYRNLEENQQVEY-VVGEGA 56

Query: 62 NGKYSAENLKL 72
           G  + + + L
Sbjct: 57 KGPQAQQVVAL 67


>gi|83648221|ref|YP_436656.1| cold shock protein [Hahella chejuensis KCTC 2396]
 gi|83636264|gb|ABC32231.1| Cold shock protein [Hahella chejuensis KCTC 2396]
          Length = 69

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  E    SG DVF H SA+ S G   LTEGQ V +   +     
Sbjct: 6  KGTVKWFNETKGFGFIQQE----SGPDVFAHFSAIVSNGFKTLTEGQQVEFTVAKGPKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -PQAENI 66


>gi|239627541|ref|ZP_04670572.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          bacterium 1_7_47_FAA]
 gi|239517687|gb|EEQ57553.1| cold-shock DNA-binding domain-containing protein [Clostridiales
          bacterium 1_7_47FAA]
          Length = 65

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI+     E G+DVF+H S +   G  +L EG  V ++ V N A G
Sbjct: 2  KGTVKWFNNQKGYGFIS----DEQGNDVFVHYSGLNMDGFKSLDEGAEVEFEVV-NGAKG 56

Query: 64 KYSAENLKL 72
            +    +L
Sbjct: 57 PQATNVTRL 65


>gi|254522559|ref|ZP_05134614.1| cold-shock domain family protein [Stenotrophomonas sp. SKA14]
 gi|219720150|gb|EED38675.1| cold-shock domain family protein [Stenotrophomonas sp. SKA14]
          Length = 69

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFI    S ++G+DVF+H  A+ + G  +L EGQ VT++ VQ   
Sbjct: 4  RETGTVKWFNDAKGFGFI----SRQNGEDVFVHFRAIETHGFKSLKEGQSVTFEVVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++ V
Sbjct: 60 G--LQADKVQPV 69


>gi|16129511|ref|NP_416070.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. MG1655]
 gi|89108394|ref|AP_002174.1| cold shock protein [Escherichia coli str. K-12 substr. W3110]
 gi|170020098|ref|YP_001725052.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli ATCC 8739]
 gi|170081220|ref|YP_001730540.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|191169221|ref|ZP_03030975.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|193066944|ref|ZP_03047913.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194436556|ref|ZP_03068657.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|218551648|ref|YP_002385440.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
          35469]
 gi|218554114|ref|YP_002387027.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
 gi|218561575|ref|YP_002394488.1| cold shock protein; Qin prophage [Escherichia coli S88]
 gi|218699878|ref|YP_002407507.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
 gi|218705054|ref|YP_002412573.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
 gi|238900772|ref|YP_002926568.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
 gi|254161612|ref|YP_003044720.1| cold shock protein [Escherichia coli B str. REL606]
 gi|256022767|ref|ZP_05436632.1| cold shock protein [Escherichia sp. 4_1_40B]
 gi|260855290|ref|YP_003229181.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368]
 gi|297521188|ref|ZP_06939574.1| cold shock protein; Qin prophage [Escherichia coli OP50]
 gi|300899658|ref|ZP_07117889.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300903922|ref|ZP_07121817.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300917740|ref|ZP_07134386.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300938341|ref|ZP_07153095.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|301025109|ref|ZP_07188703.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|301307308|ref|ZP_07213320.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|301326423|ref|ZP_07219775.1| transcriptional repressor activity CueR [Escherichia coli MS
          78-1]
 gi|301647713|ref|ZP_07247506.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|307138206|ref|ZP_07497562.1| cold shock protein; Qin prophage [Escherichia coli H736]
 gi|307310883|ref|ZP_07590529.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|312969564|ref|ZP_07783747.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|331642140|ref|ZP_08343275.1| conserved domain protein [Escherichia coli H736]
 gi|331652930|ref|ZP_08353935.1| conserved domain protein [Escherichia coli M718]
 gi|331668007|ref|ZP_08368862.1| conserved domain protein [Escherichia coli TA271]
 gi|331673141|ref|ZP_08373909.1| conserved domain protein [Escherichia coli TA280]
 gi|331683057|ref|ZP_08383658.1| conserved domain protein [Escherichia coli H299]
 gi|71154170|sp|P0A987|CSPI_ECOL6 RecName: Full=Cold shock-like protein CspI; Short=CPS-I
 gi|71154171|sp|P0A986|CSPI_ECOLI RecName: Full=Cold shock-like protein CspI; Short=CPS-I
 gi|1742550|dbj|BAA15254.1| cold shock protein [Escherichia coli str. K12 substr. W3110]
 gi|1787834|gb|AAC74625.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. MG1655]
 gi|169755026|gb|ACA77725.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|169889055|gb|ACB02762.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|190900732|gb|EDV60527.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|192959534|gb|EDV89968.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194424588|gb|EDX40574.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|218359190|emb|CAQ91855.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
          35469]
 gi|218360882|emb|CAQ98452.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
 gi|218368344|emb|CAR06163.1| cold shock protein; Qin prophage [Escherichia coli S88]
 gi|218369864|emb|CAR17638.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
 gi|218432151|emb|CAR13039.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
 gi|222033313|emb|CAP76053.1| Cold shock-like protein cspI [Escherichia coli LF82]
 gi|238863367|gb|ACR65365.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
 gi|253973513|gb|ACT39184.1| cold shock protein [Escherichia coli B str. REL606]
 gi|257753939|dbj|BAI25441.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368]
 gi|260449326|gb|ACX39748.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|300356783|gb|EFJ72653.1| transcriptional repressor activity CueR [Escherichia coli MS
          198-1]
 gi|300396218|gb|EFJ79756.1| transcriptional repressor activity CueR [Escherichia coli MS
          69-1]
 gi|300404082|gb|EFJ87620.1| transcriptional repressor activity CueR [Escherichia coli MS
          84-1]
 gi|300415017|gb|EFJ98327.1| transcriptional repressor activity CueR [Escherichia coli MS
          115-1]
 gi|300456677|gb|EFK20170.1| transcriptional repressor activity CueR [Escherichia coli MS
          21-1]
 gi|300837501|gb|EFK65261.1| transcriptional repressor activity CueR [Escherichia coli MS
          124-1]
 gi|300846839|gb|EFK74599.1| transcriptional repressor activity CueR [Escherichia coli MS
          78-1]
 gi|301074148|gb|EFK88954.1| transcriptional repressor activity CueR [Escherichia coli MS
          146-1]
 gi|306909061|gb|EFN39557.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|310337849|gb|EFQ02938.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|312946155|gb|ADR26982.1| putative cold shock protein [Escherichia coli O83:H1 str. NRG
          857C]
 gi|315060851|gb|ADT75178.1| Qin prophage; cold shock protein [Escherichia coli W]
 gi|315136193|dbj|BAJ43352.1| cold shock DNA-binding protein [Escherichia coli DH1]
 gi|315253268|gb|EFU33236.1| transcriptional repressor activity CueR [Escherichia coli MS
          85-1]
 gi|320178969|gb|EFW53930.1| Cold shock protein CspI [Shigella boydii ATCC 9905]
 gi|320197740|gb|EFW72348.1| Cold shock protein CspI [Escherichia coli EC4100B]
 gi|320643970|gb|EFX13059.1| putative cold shock protein [Escherichia coli O157:H- str.
          493-89]
 gi|320649396|gb|EFX17940.1| putative cold shock protein [Escherichia coli O157:H- str. H
          2687]
 gi|320660357|gb|EFX27831.1| putative cold shock protein [Escherichia coli O55:H7 str. USDA
          5905]
 gi|323156718|gb|EFZ42856.1| cold shock-like protein cspI [Escherichia coli EPECa14]
 gi|323378579|gb|ADX50847.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323942031|gb|EGB38209.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323947939|gb|EGB43934.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323962248|gb|EGB57839.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H489]
 gi|323973806|gb|EGB68980.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|331038938|gb|EGI11158.1| conserved domain protein [Escherichia coli H736]
 gi|331049028|gb|EGI21100.1| conserved domain protein [Escherichia coli M718]
 gi|331064749|gb|EGI36653.1| conserved domain protein [Escherichia coli TA271]
 gi|331069339|gb|EGI40726.1| conserved domain protein [Escherichia coli TA280]
 gi|331079272|gb|EGI50469.1| conserved domain protein [Escherichia coli H299]
 gi|332343261|gb|AEE56595.1| cold shock-like protein CspI [Escherichia coli UMNK88]
          Length = 70

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+NP+KG+GFITP    +   DVF+H SA+ S     LTE Q V +   +N   G
Sbjct: 6  TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQEVEFGI-ENGPKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PAAVHVVAL 70


>gi|289678192|ref|ZP_06499082.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae FF5]
 gi|330899515|gb|EGH30934.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          japonica str. M301072PT]
 gi|330938935|gb|EGH42434.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi
          str. 1704B]
 gi|330982632|gb|EGH80735.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 70

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59

Query: 62 NGKYSAENLK 71
               A+ ++
Sbjct: 60 G--MQADEVQ 67


>gi|322419522|ref|YP_004198745.1| cold-shock DNA-binding domain-containing protein [Geobacter sp.
          M18]
 gi|320125909|gb|ADW13469.1| cold-shock DNA-binding domain protein [Geobacter sp. M18]
          Length = 66

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  E    +G+DVF+H SA+ S G  +LTEG  VT++ V+   
Sbjct: 1  MVNGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAINSDGFKSLTEGDSVTFEIVKG-P 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 KGLQAANV 63


>gi|145294296|ref|YP_001137117.1| hypothetical protein cgR_0252 [Corynebacterium glutamicum R]
 gi|140844216|dbj|BAF53215.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 67

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI P    +   D+F+H S +  +G  NL E QLV ++  +   
Sbjct: 1  MAQGTVKWFNGEKGFGFIAP---NDGSADLFVHYSEIQGSGFRNLEENQLVEFEVGEGAK 57

Query: 62 NGKYSAENLKLV 73
               A+ ++ +
Sbjct: 58 G--PQAQQVRAI 67


>gi|291285780|ref|YP_003502598.1| Cold shock-like protein cspI [Escherichia coli O55:H7 str.
          CB9615]
 gi|331666067|ref|ZP_08366961.1| conserved domain protein [Escherichia coli TA143]
 gi|331680509|ref|ZP_08381168.1| conserved domain protein [Escherichia coli H591]
 gi|290765653|gb|ADD59614.1| Cold shock-like protein cspI [Escherichia coli O55:H7 str.
          CB9615]
 gi|323190384|gb|EFZ75660.1| cold shock-like protein cspI [Escherichia coli RN587/1]
 gi|324112028|gb|EGC06006.1| cold-shock DNA-binding domain-containing protein [Escherichia
          fergusonii B253]
 gi|325499892|gb|EGC97751.1| Cold shock-like protein cspI [Escherichia fergusonii ECD227]
 gi|331057118|gb|EGI29112.1| conserved domain protein [Escherichia coli TA143]
 gi|331071972|gb|EGI43308.1| conserved domain protein [Escherichia coli H591]
          Length = 70

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+NP+KG+GFITP    +   DVF+H SA+ S     LTE Q V +   +N   G
Sbjct: 6  TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQQVEFGI-ENGPKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PAAVHVVAL 70


>gi|90023468|ref|YP_529295.1| cold-shock DNA-binding protein family protein [Saccharophagus
          degradans 2-40]
 gi|89953068|gb|ABD83083.1| cold-shock DNA-binding protein family [Saccharophagus degradans
          2-40]
          Length = 86

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKG+GFITP    + G D+F+H S +    G   L +GQ V ++  Q  
Sbjct: 19 MSKGTVKWFNADKGFGFITP---ADGGKDLFVHHSEIQAGGGYATLNDGQEVEFEVGQGQ 75

Query: 61 ANG 63
             
Sbjct: 76 KGP 78


>gi|51244787|ref|YP_064671.1| cold-shock protein (CspD) [Desulfotalea psychrophila LSv54]
 gi|50875824|emb|CAG35664.1| probable cold-shock protein (CspD) [Desulfotalea psychrophila
          LSv54]
          Length = 66

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI      E GDD+F+H +++ ++G   L EG  V++D  +   
Sbjct: 1  MAEGIVKWFNDAKGFGFI----DQEGGDDLFVHHTSINASGFKTLEEGARVSFDIEEGQ- 55

Query: 62 NGKYSAENLKL 72
           G  +A    L
Sbjct: 56 KGPAAANVTAL 66


>gi|326795949|ref|YP_004313769.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
 gi|326546713|gb|ADZ91933.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
          Length = 69

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF H SA+  +G   L EGQ V +   Q    G
Sbjct: 6  TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAITGSGFKTLAEGQKVEFTVGQG-PKG 60

Query: 64 KYSAENLKL 72
            + + + L
Sbjct: 61 PQAEDIVAL 69


>gi|209972098|gb|ACJ03560.1| cold shock protein [Bacillus thuringiensis serovar poloniensis]
          Length = 67

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N +KG+GFI   G     +DVF+H SA+ + G  +L EGQ V+ +  + +
Sbjct: 1  MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSLEIEEGN 56

Query: 61 ANGKYSAENLKL 72
            G  +   +KL
Sbjct: 57 -RGPQAKNVIKL 67


>gi|91226269|ref|ZP_01261109.1| cold shock protein [Vibrio alginolyticus 12G01]
 gi|91189280|gb|EAS75559.1| cold shock protein [Vibrio alginolyticus 12G01]
          Length = 70

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             GS+KW+N +KG+GFIT +     G D+F+H  +++S G   L EGQ V+++ V+   
Sbjct: 4  RETGSVKWFNENKGFGFITKDS---DGKDIFVHFRSISSDGFKTLLEGQKVSFE-VEPGE 59

Query: 62 NGKYSAENLKLV 73
           G + A N+ L+
Sbjct: 60 KGPH-ATNVALI 70


>gi|320105451|ref|YP_004181041.1| cold-shock DNA-binding domain-containing protein [Terriglobus
          saanensis SP1PR4]
 gi|319923972|gb|ADV81047.1| cold-shock DNA-binding domain protein [Terriglobus saanensis
          SP1PR4]
          Length = 66

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GF+    S  +G+DVF+H +A+ S G  +L EGQ V ++ V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFL----SRANGEDVFVHHTAIQSNGFRSLQEGQNVQFNVVKGPK 56

Query: 62 NGKYSAENLKL 72
             + AEN+++
Sbjct: 57 G--WQAENVQV 65


>gi|296134718|ref|YP_003641960.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12]
 gi|294338681|emb|CAZ87012.1| Cold shock protein [Thiomonas sp. 3As]
 gi|295794840|gb|ADG29630.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12]
          Length = 69

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +G      D+F+H S +   G   L E Q V ++  Q   
Sbjct: 3  MQTGAVKWFNESKGFGFIAQDGGD---ADLFVHFSEIQGNGFKTLAENQRVQFEVKQGPK 59

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 60 G--LQASNVTPL 69


>gi|322435623|ref|YP_004217835.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321163350|gb|ADW69055.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 89

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G + W+N  KG+GFITPE     G DVF+H SA+   G   L EG  V ++      
Sbjct: 3  RQTGKVAWFNNGKGFGFITPET----GPDVFVHYSAIMLDGFKTLDEGDTVDFEIETGST 58

Query: 62 NGKYSAENLKL 72
              + + ++L
Sbjct: 59 GRPEARKVVRL 69


>gi|225874667|ref|YP_002756126.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793793|gb|ACO33883.1| cold shock protein [Acidobacterium capsulatum ATCC 51196]
          Length = 87

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KGYGFI       +G+DVF+H SA+  +G   L EG+ V ++  Q    
Sbjct: 22 ENGVVKWFNGAKGYGFIQ----RSTGEDVFVHFSAIQDSGYKTLNEGEAVEFECQQG-PK 76

Query: 63 GKYSAENLK 71
          G  +A  ++
Sbjct: 77 GLNAANVVR 85


>gi|330873092|gb|EGH07241.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 70

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59

Query: 62 N 62
           
Sbjct: 60 G 60


>gi|307328240|ref|ZP_07607418.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306886074|gb|EFN17082.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 67

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D      
Sbjct: 1  MASGTVKWFNAAKGFGFIEQDG---GGADVFAHFSNIAAEGFRELLEGQKVTFDVAAGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|157364239|ref|YP_001471006.1| cold-shock DNA-binding domain-containing protein [Thermotoga
          lettingae TMO]
 gi|157314843|gb|ABV33942.1| putative cold-shock DNA-binding domain protein [Thermotoga
          lettingae TMO]
          Length = 66

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++P KGYGFIT     + G DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 2  KGTVKWFDPKKGYGFIT----KQEGGDVFVHWSALEMDGFKTLKEGQEVEFEI-QDGPKG 56

Query: 64 KYSAENLKLV 73
            +A  +K+V
Sbjct: 57 PQAAH-VKVV 65


>gi|118581708|ref|YP_902958.1| cold-shock DNA-binding domain-containing protein [Pelobacter
          propionicus DSM 2379]
 gi|118504418|gb|ABL00901.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM
          2379]
          Length = 66

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  E    +G+DVF+H SA++  G  +L EG  VT++ V+   
Sbjct: 1  MVNGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAISGEGFKSLAEGDSVTFELVKG-P 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 KGLQAANVTKI 66


>gi|253584039|ref|ZP_04861237.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
 gi|251834611|gb|EES63174.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
          Length = 66

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI+     E G+D F+H S + S G  +L EGQ VT++  + + 
Sbjct: 1  MLKGTVKWFNKDKGFGFIS----GEDGNDYFVHYSNINSKGFRSLEEGQAVTFEVTEGEK 56

Query: 62 NGKYSAENLKL 72
               A N+ +
Sbjct: 57 G--PVASNVTV 65


>gi|94499669|ref|ZP_01306206.1| Cold shock protein [Oceanobacter sp. RED65]
 gi|94428423|gb|EAT13396.1| Cold shock protein [Oceanobacter sp. RED65]
          Length = 92

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +   E G+D+F H S++   G   L  GQ V +D   +D 
Sbjct: 1  MQTGKVKWFNNAKGYGFILSD---EGGEDLFAHYSSIQVEGYKTLKAGQSVQFDTKPSDQ 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--THAINITPL 67


>gi|66044345|ref|YP_234186.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|302188384|ref|ZP_07265057.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae 642]
 gi|63255052|gb|AAY36148.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|330950944|gb|EGH51204.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7]
 gi|330969232|gb|EGH69298.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 70

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59

Query: 62 NGKYSAENLK 71
               A+ ++
Sbjct: 60 G--MQADEVQ 67


>gi|322436511|ref|YP_004218723.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321164238|gb|ADW69943.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 70

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          ++G +KW+N  KGYGF+      + G DVF H SAV + G  +L EG  V +D +  D +
Sbjct: 4  YKGQVKWFNNAKGYGFL----GRDGGSDVFCHYSAVQTDGYKSLKEGDEVEFDIIDGD-S 58

Query: 63 GKYSAENL 70
          GK  A+ +
Sbjct: 59 GKPQADKV 66


>gi|297798314|ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297312877|gb|EFH43300.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 257

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G + W+N  KGYGFITP+  +E    +F+H+S++ S G  +L EG  V +   Q  ++G
Sbjct: 12 TGKVNWFNDSKGYGFITPDDRSEE---LFVHQSSIVSEGYRSLAEGDSVEFAITQG-SDG 67

Query: 64 KYSAENLKLV 73
          K  A  +  +
Sbjct: 68 KTKAVEVTAL 77


>gi|262372451|ref|ZP_06065730.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
 gi|262312476|gb|EEY93561.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
          Length = 70

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G +KW+N  KG+GFI        GDDVF+H  A+   G  +L +GQ V +  VQ   
Sbjct: 4  REQGVVKWFNDTKGFGFIQ----RNGGDDVFVHFRAIVGEGHRSLRDGQRVEFSVVQGQK 59

Query: 62 NGKYSAENLKLV 73
             + AEN++ +
Sbjct: 60 G--FQAENVQPL 69


>gi|225022302|ref|ZP_03711494.1| hypothetical protein CORMATOL_02341 [Corynebacterium matruchotii
          ATCC 33806]
 gi|224944899|gb|EEG26108.1| hypothetical protein CORMATOL_02341 [Corynebacterium matruchotii
          ATCC 33806]
          Length = 73

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFI PE   +   DVF+H S +   G   L E Q+V ++    D 
Sbjct: 6  MAKGAVKWFNAEKGFGFIEPE---DGSADVFVHYSEINGDGFRYLEENQVVEFEV--GDG 60

Query: 62 NGKYSAENLKLV 73
               A N++++
Sbjct: 61 AKGTQALNVRVI 72


>gi|17986781|ref|NP_539415.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M]
 gi|148560167|ref|YP_001259392.1| cold-shock family protein [Brucella ovis ATCC 25840]
 gi|225627956|ref|ZP_03785992.1| cold shock protein CSPA [Brucella ceti str. Cudo]
 gi|237815906|ref|ZP_04594903.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
 gi|297248787|ref|ZP_06932505.1| cold-shock family protein [Brucella abortus bv. 5 str. B3196]
 gi|306843139|ref|ZP_07475759.1| cold shock protein [Brucella sp. BO2]
 gi|17982411|gb|AAL51679.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M]
 gi|148371424|gb|ABQ61403.1| cold-shock family protein [Brucella ovis ATCC 25840]
 gi|225617119|gb|EEH14165.1| cold shock protein CSPA [Brucella ceti str. Cudo]
 gi|237789204|gb|EEP63415.1| cold shock protein CSPA [Brucella abortus str. 2308 A]
 gi|297175956|gb|EFH35303.1| cold-shock family protein [Brucella abortus bv. 5 str. B3196]
 gi|306286662|gb|EFM58220.1| cold shock protein [Brucella sp. BO2]
          Length = 83

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N +KG+GFI P+   + G D+F+H SAV ++GL  L + Q V+Y+   + 
Sbjct: 13 MAQTGQVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLPGLADNQKVSYETEPDR 69

Query: 61 ANGKYSAENLKL 72
                A N+ +
Sbjct: 70 RGKGPKAVNITI 81


>gi|257791070|ref|YP_003181676.1| cold-shock DNA-binding domain-containing protein [Eggerthella
          lenta DSM 2243]
 gi|317488206|ref|ZP_07946777.1| cold-shock' DNA-binding domain-containing protein [Eggerthella
          sp. 1_3_56FAA]
 gi|325830873|ref|ZP_08164257.1| cold shock protein CspD [Eggerthella sp. HGA1]
 gi|257474967|gb|ACV55287.1| cold-shock DNA-binding domain protein [Eggerthella lenta DSM
          2243]
 gi|316912711|gb|EFV34249.1| cold-shock' DNA-binding domain-containing protein [Eggerthella
          sp. 1_3_56FAA]
 gi|325487280|gb|EGC89723.1| cold shock protein CspD [Eggerthella sp. HGA1]
          Length = 67

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW++ +KGYGFI+ E    +G+D+F+H S +   G  +L E   V +  + + +
Sbjct: 1  MSQGTVKWFSSEKGYGFISQE----NGEDLFVHFSEIQGDGYKSLDENAKVEF-VIASGS 55

Query: 62 NGKYSAENLKLV 73
          NGK  A  + ++
Sbjct: 56 NGKSQATQVCVL 67


>gi|226313978|ref|YP_002773874.1| cold shock protein [Brevibacillus brevis NBRC 100599]
 gi|226096928|dbj|BAH45370.1| cold shock protein [Brevibacillus brevis NBRC 100599]
          Length = 68

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW++ +KGYGFI  +     G DVF+H SA+  AG  NL EG+ V ++ V N  
Sbjct: 1  MIQGKVKWFSKEKGYGFIERD----GGPDVFVHYSAITGAGYRNLEEGEQVVFEIV-NGQ 55

Query: 62 NGKYSAENLKLV 73
           G  +A   + V
Sbjct: 56 RGLQAANVARKV 67


>gi|90581455|ref|ZP_01237249.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|90437316|gb|EAS62513.1| putative Cold shock-like protein [Vibrio angustum S14]
          Length = 70

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N +KG+GF+T +     G DVF+H  A+AS G   L EGQ V++D  Q      
Sbjct: 7  GLVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQGQKG-- 61

Query: 65 YSAENL 70
            A N+
Sbjct: 62 LQAVNV 67


>gi|120554677|ref|YP_959028.1| cold-shock DNA-binding domain-containing protein [Marinobacter
          aquaeolei VT8]
 gi|120324526|gb|ABM18841.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei
          VT8]
          Length = 103

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N  KGYGFI  +G ++   D+F H S+V   G   L  GQ VT+D   +D 
Sbjct: 1  MPRGKVKWFNNAKGYGFIIEDGCSD---DLFAHFSSVQMDGYKTLKAGQTVTFDKKPSDK 57

Query: 62 NGKYSAENLKLVPKS 76
                  + +VP  
Sbjct: 58 G----VHAINIVPDE 68


>gi|300925271|ref|ZP_07141166.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
 gi|300418604|gb|EFK01915.1| transcriptional repressor activity CueR [Escherichia coli MS
          182-1]
          Length = 71

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 1  MV---HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          M+     G +KW+NP+KG+GFITP    +   DVF+H SA+ S     LTE Q V +   
Sbjct: 1  MMFNKMTGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQEVEFGI- 56

Query: 58 QNDANGKYSAENLKL 72
          +N   G  +   + L
Sbjct: 57 ENGPKGPAAVHVVAL 71


>gi|253701491|ref|YP_003022680.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
 gi|251776341|gb|ACT18922.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
          Length = 66

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  E    +GDDVF H SA+   G  +L EG  VT+D V+   
Sbjct: 1  MANGTVKWFNDSKGFGFLEQE----NGDDVFCHFSAITGDGFKSLVEGDSVTFDVVKG-P 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGLQAANVTRV 66


>gi|148974863|ref|ZP_01811843.1| cold shock DNA-binding domain protein [Vibrionales bacterium
          SWAT-3]
 gi|145965372|gb|EDK30621.1| cold shock DNA-binding domain protein [Vibrionales bacterium
          SWAT-3]
          Length = 69

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H SA+   G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAITGEGFKTLAEGQKVEFVVSQGQKG- 60

Query: 64 KYSAENLKLV 73
             A+++K++
Sbjct: 61 -PQADSIKVL 69


>gi|237799875|ref|ZP_04588336.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. oryzae
          str. 1_6]
 gi|331022730|gb|EGI02787.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. oryzae
          str. 1_6]
          Length = 70

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59

Query: 62 N 62
           
Sbjct: 60 G 60


>gi|329934360|ref|ZP_08284439.1| cold shock protein [Streptomyces griseoaurantiacus M045]
 gi|329305956|gb|EGG49811.1| cold shock protein [Streptomyces griseoaurantiacus M045]
          Length = 68

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI+     + G DVF H S +  +G   LTEG+ VT+D  Q   
Sbjct: 1  MASGTVKWFNSEKGFGFISQ---NDGGPDVFAHYSEINGSGYRELTEGEQVTFDIGQGQK 57

Query: 62 NGKYSAENLK 71
               A+N+ 
Sbjct: 58 G--PQAQNIT 65


>gi|326388755|ref|ZP_08210344.1| cold-shock DNA-binding domain protein [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326206779|gb|EGD57607.1| cold-shock DNA-binding domain protein [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 68

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKGYGFI PE     G+D F+H SAV  AG+  L++ Q ++Y+ V+ D 
Sbjct: 1  MTIGTVKFFNTDKGYGFIAPE---NGGNDSFVHFSAVQQAGMATLSKDQRLSYE-VETDR 56

Query: 62 NGKYSAENL 70
           GK SA NL
Sbjct: 57 RGKQSAINL 65


>gi|50084936|ref|YP_046446.1| cold shock-like protein [Acinetobacter sp. ADP1]
 gi|49530912|emb|CAG68624.1| cold shock-like protein [Acinetobacter sp. ADP1]
          Length = 70

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI    S++SG+DVF H S ++++G   L EGQ V +  V N   G
Sbjct: 6  QGTVKWFNETKGFGFI----SSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVV-NGKKG 60

Query: 64 KYSAENLKLVP 74
             A N+ +V 
Sbjct: 61 -LQASNISIVK 70


>gi|297204693|ref|ZP_06922090.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|197710764|gb|EDY54798.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
          Length = 67

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +G    G DVF H S +A+ G   L EGQ VT+D      
Sbjct: 1  MASGTVKWFNAAKGFGFIEQDG---GGADVFAHFSNIAAQGFRELLEGQKVTFDIAAGQK 57

Query: 62 NGKYSAENLKL 72
              +AEN+ L
Sbjct: 58 G--PTAENIVL 66


>gi|254428424|ref|ZP_05042131.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
 gi|196194593|gb|EDX89552.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881]
          Length = 62

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GFI+ +   + G DVF+H SA+  +G   L EGQ V+++  Q    G  +
Sbjct: 1  MKWFNESKGFGFISQD---DGGADVFVHFSAITGSGFKTLAEGQKVSFEIQQG-PKGPQA 56

Query: 67 AENL 70
          A  +
Sbjct: 57 ANVV 60


>gi|45443632|ref|NP_995171.1| major cold shock protein Cspa1 [Yersinia pestis biovar Microtus
          str. 91001]
 gi|145597567|ref|YP_001161643.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides F]
 gi|153997418|ref|ZP_02022518.1| major cold shock protein Cspa1 [Yersinia pestis CA88-4125]
 gi|162420218|ref|YP_001605761.1| cold shock DNA-binding domain-containing protein [Yersinia pestis
          Angola]
 gi|165927555|ref|ZP_02223387.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165937557|ref|ZP_02226120.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166012240|ref|ZP_02233138.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166214174|ref|ZP_02240209.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167401977|ref|ZP_02307460.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167420574|ref|ZP_02312327.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167425550|ref|ZP_02317303.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|170022695|ref|YP_001719200.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|218930654|ref|YP_002348529.1| major cold shock protein Cspa1 [Yersinia pestis CO92]
 gi|229836787|ref|ZP_04456952.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides A]
 gi|229839313|ref|ZP_04459472.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
          str. PEXU2]
 gi|229899877|ref|ZP_04515018.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
          str. India 195]
 gi|229904188|ref|ZP_04519299.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516]
 gi|270488627|ref|ZP_06205701.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|45438502|gb|AAS64048.1| major cold shock protein Cspa1 [Yersinia pestis biovar Microtus
          str. 91001]
 gi|115349265|emb|CAL22232.1| major cold shock protein Cspa1 [Yersinia pestis CO92]
 gi|145209263|gb|ABP38670.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|149289055|gb|EDM39135.1| major cold shock protein Cspa1 [Yersinia pestis CA88-4125]
 gi|162353033|gb|ABX86981.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
 gi|165914662|gb|EDR33276.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165920449|gb|EDR37726.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165988859|gb|EDR41160.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166204661|gb|EDR49141.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166961380|gb|EDR57401.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167048563|gb|EDR59971.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167055564|gb|EDR65357.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169749229|gb|ACA66747.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|229678306|gb|EEO74411.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516]
 gi|229687369|gb|EEO79444.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
          str. India 195]
 gi|229695679|gb|EEO85726.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis
          str. PEXU2]
 gi|229705730|gb|EEO91739.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides A]
 gi|270337131|gb|EFA47908.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|320017193|gb|ADW00765.1| major cold shock protein Cspa1 [Yersinia pestis biovar Medievalis
          str. Harbin 35]
          Length = 70

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVIAL 70


>gi|307107761|gb|EFN56003.1| hypothetical protein CHLNCDRAFT_145396 [Chlorella variabilis]
          Length = 301

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 3/62 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFIT E S +    VF+H+S + + G  +L EG+ V +D V  D   K
Sbjct: 15 GTVKWFNSTKGYGFITCEESEDE---VFVHQSNIETTGYRSLKEGEEVEFDLVVADDGKK 71

Query: 65 YS 66
           +
Sbjct: 72 KA 73


>gi|91200723|emb|CAJ73775.1| strongly similar to cold shock protein CspB [Candidatus Kuenenia
          stuttgartiensis]
          Length = 66

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+ E    +G DVF+H++++ S G   L EG  V +D + +D 
Sbjct: 1  MANGTVKWFNDSKGFGFISQE----NGTDVFVHQTSIKSEGFRTLAEGDKVEFDVI-SDQ 55

Query: 62 NGKYSAENLKL 72
           G+ +   +K+
Sbjct: 56 KGQKATNVVKV 66


>gi|120554260|ref|YP_958611.1| cold-shock DNA-binding domain-containing protein [Marinobacter
          aquaeolei VT8]
 gi|120324109|gb|ABM18424.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei
          VT8]
          Length = 68

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT E     G DVF+H SA+   G   L EGQ V +   Q     
Sbjct: 5  TGTVKFFNESKGFGFITRE----GGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKG- 59

Query: 64 KYSAENL 70
             AEN+
Sbjct: 60 -PQAENV 65


>gi|187251844|ref|YP_001876326.1| cold-shock DNA-binding domain-containing protein [Elusimicrobium
          minutum Pei191]
 gi|186972004|gb|ACC98989.1| Cold-shock DNA-binding domain protein [Elusimicrobium minutum
          Pei191]
          Length = 67

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G IKW+N  KGYGF+TPE   +   D+F+H   +   G   L EGQ V +D  +++ 
Sbjct: 1  MAQGKIKWFNDQKGYGFVTPE---DGSADLFVHYQEIQGEGFKTLAEGQAVEFDVAKSEK 57

Query: 62 NGKYSAENLKLV 73
            K  A N++ +
Sbjct: 58 GPK--ATNVRKI 67


>gi|302386621|ref|YP_003822443.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
 gi|302197249|gb|ADL04820.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
          Length = 65

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI+     E G+DVF+H S +   G  +L EG  V +D V + A G
Sbjct: 2  KGTVKWFNNQKGYGFIS----DEQGNDVFVHYSGLNMDGFKSLDEGAAVEFDVV-DGAKG 56

Query: 64 KYSAENLKL 72
            +    K+
Sbjct: 57 PQATNVTKI 65


>gi|261252479|ref|ZP_05945052.1| cold shock protein CspD [Vibrio orientalis CIP 102891]
 gi|260935870|gb|EEX91859.1| cold shock protein CspD [Vibrio orientalis CIP 102891]
          Length = 73

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  EG      DVF H S +   G   L  GQ V ++  +   
Sbjct: 1  MATGTVKWFNNAKGFGFICSEGED---GDVFAHYSTIKMDGYRTLKAGQQVNFEVEEGPK 57

Query: 62 NGKYSAENLKLVPKS 76
             Y A  +  V   
Sbjct: 58 G--YHASVVTPVEAQ 70


>gi|229823948|ref|ZP_04450017.1| hypothetical protein GCWU000282_01252 [Catonella morbi ATCC
          51271]
 gi|229786302|gb|EEP22416.1| hypothetical protein GCWU000282_01252 [Catonella morbi ATCC
          51271]
          Length = 90

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKG+GFI      + G DVF+H S + + G   L EGQ V+YD VQ  +
Sbjct: 25 MLNGTVKFFNVDKGFGFIA----GQDGVDVFVHFSNIQADGFKTLNEGQTVSYD-VQETS 79

Query: 62 NGKYSAENLKL 72
           G  +   + +
Sbjct: 80 RGLQAINVVAI 90


>gi|218780562|ref|YP_002431880.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218761946|gb|ACL04412.1| cold-shock DNA-binding domain protein [Desulfatibacillum
          alkenivorans AK-01]
          Length = 69

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFI  E     G DVF+H SA+   G  +L EGQ V +  VQ   
Sbjct: 4  REMGTVKWFNDKKGFGFIERE----EGGDVFVHYSAIVGNGFRSLAEGQKVEFTVVQGAK 59

Query: 62 NGKYSAENLK 71
              +AE + 
Sbjct: 60 G--PAAEEVS 67


>gi|257056878|ref|YP_003134710.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
 gi|256586750|gb|ACU97883.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
          Length = 67

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P+G    G DVF+H S +   G  +L +GQ V +   Q  A
Sbjct: 1  MAEGTVKWFNSEKGFGFIAPDG---GGADVFVHYSEIDGRGFRSLEDGQRVVFTVGQG-A 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPQA 61


>gi|222099844|ref|YP_002534412.1| Cold shock-like protein [Thermotoga neapolitana DSM 4359]
 gi|221572234|gb|ACM23046.1| Cold shock-like protein [Thermotoga neapolitana DSM 4359]
          Length = 66

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++  KGYGFIT +     G DVF+H SA+   G   L EGQ+V ++ VQ    G
Sbjct: 2  RGKVKWFDAKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFE-VQEGKKG 56

Query: 64 KYSAEN 69
            +A  
Sbjct: 57 PQAAHV 62


>gi|108803028|ref|YP_642965.1| cold-shock DNA-binding protein family protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108764271|gb|ABG03153.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 67

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW++ +KGYGFI+P+   +  +D+F+H + +   G   L EG  V+Y+  +   
Sbjct: 1  MAQGTVKWFSDEKGYGFISPD---DGSEDLFVHYTGIEGTGFKTLEEGARVSYETTRGRK 57

Query: 62 NGKYSAENLKLV 73
               A  +  +
Sbjct: 58 G--MQAVKVSRI 67


>gi|323169843|gb|EFZ55499.1| cold shock-like protein cspI [Escherichia coli LT-68]
          Length = 66

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+NP+KG+GFITP    +   DVF+H SA+ S     LTE Q V +   +N   G
Sbjct: 2  TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQEVEFGI-ENGPKG 57

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 58 PAAVHVVAL 66


>gi|310780205|ref|YP_003968537.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
 gi|309749528|gb|ADO84189.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM
          2926]
          Length = 66

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFIT    +E G DVF+H S +   G   L EG+ VT++  Q   
Sbjct: 1  MVNGTVKWFNQEKGFGFIT----SEDGTDVFVHFSQINKPGFKTLEEGEQVTFEITQGQK 56

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 57 G--PQASNVT 64


>gi|226941142|ref|YP_002796216.1| hypothetical protein LHK_02223 [Laribacter hongkongensis HLHK9]
 gi|226716069|gb|ACO75207.1| cold-shock domain family protein [Laribacter hongkongensis HLHK9]
          Length = 69

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G++KW+N  KG+GFI+P+     GDD+F H + + + G   L EG+ VT++       
Sbjct: 4  QTGTVKWFNETKGFGFISPDA---GGDDLFAHFTEIQTKGFRTLAEGERVTFETKMGPKG 60

Query: 63 GKYSAENLK 71
             +A N++
Sbjct: 61 --VAAANIQ 67


>gi|153008980|ref|YP_001370195.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
          anthropi ATCC 49188]
 gi|151560868|gb|ABS14366.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
          anthropi ATCC 49188]
          Length = 71

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N +KG+GFI P+   + G D+F+H SAV ++GL  L + Q V+Y+   + 
Sbjct: 1  MAQTGLVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLTGLADNQKVSYETEPDR 57

Query: 61 ANGKYSAENLKL 72
                A N+ +
Sbjct: 58 RGKGPKAVNITV 69


>gi|149195695|ref|ZP_01872752.1| putative cold-shock DNA-binding domain protein [Lentisphaera
          araneosa HTCC2155]
 gi|149141157|gb|EDM29553.1| putative cold-shock DNA-binding domain protein [Lentisphaera
          araneosa HTCC2155]
          Length = 67

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+  DKG+GFITP        D+F+H + + + G  +L EGQ V Y+  Q   
Sbjct: 1  METGTVKWFADDKGFGFITPNSGD---KDLFVHHTEIQTGGFKSLAEGQKVEYEVGQGQK 57

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 58 G--PCATNVTPL 67


>gi|254244622|ref|ZP_04937944.1| hypothetical protein PA2G_05489 [Pseudomonas aeruginosa 2192]
 gi|37955684|gb|AAP22523.1| CspA [Pseudomonas aeruginosa]
 gi|126198000|gb|EAZ62063.1| hypothetical protein PA2G_05489 [Pseudomonas aeruginosa 2192]
          Length = 69

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFITPE    SG DVF+H   + ++G  +L EGQ V++ +V   A
Sbjct: 4  RQTGTVKWFNEVKGFGFITPE----SGADVFVHFRQIEASGYKSLDEGQRVSF-FVTAGA 58

Query: 62 NGKYSAENLKLV 73
           G   AE ++ +
Sbjct: 59 KGPQ-AEQVQAL 69


>gi|108809647|ref|YP_653563.1| major cold shock protein Cspa2 [Yersinia pestis Antiqua]
 gi|108813687|ref|YP_649454.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516]
 gi|145597566|ref|YP_001161642.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides F]
 gi|153948953|ref|YP_001399367.1| cold shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|153997419|ref|ZP_02022519.1| major cold shock protein Cspa2 [Yersinia pestis CA88-4125]
 gi|162421711|ref|YP_001605762.1| cold shock DNA-binding domain-containing protein [Yersinia pestis
          Angola]
 gi|165927588|ref|ZP_02223420.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165937409|ref|ZP_02225972.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166012234|ref|ZP_02233132.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166214132|ref|ZP_02240167.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167401979|ref|ZP_02307462.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167420637|ref|ZP_02312390.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167425433|ref|ZP_02317186.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|218930653|ref|YP_002348528.1| major cold shock protein Cspa2 [Yersinia pestis CO92]
 gi|229836786|ref|ZP_04456951.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides A]
 gi|229839314|ref|ZP_04459473.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
          str. PEXU2]
 gi|229899878|ref|ZP_04515019.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
          str. India 195]
 gi|229904189|ref|ZP_04519300.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516]
 gi|270488628|ref|ZP_06205702.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|2275140|emb|CAB10779.1| hypothetical protein [Yersinia pestis]
 gi|108777335|gb|ABG19854.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108781560|gb|ABG15618.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
 gi|115349264|emb|CAL22231.1| major cold shock protein Cspa2 [Yersinia pestis CO92]
 gi|145209262|gb|ABP38669.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|149289056|gb|EDM39136.1| major cold shock protein Cspa2 [Yersinia pestis CA88-4125]
 gi|152960448|gb|ABS47909.1| 'Cold-shock' DNA-binding domain [Yersinia pseudotuberculosis IP
          31758]
 gi|162354526|gb|ABX88474.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
 gi|165914514|gb|EDR33128.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165920482|gb|EDR37759.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165988853|gb|EDR41154.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166204619|gb|EDR49099.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166961443|gb|EDR57464.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167048565|gb|EDR59973.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167055447|gb|EDR65240.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|229678307|gb|EEO74412.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516]
 gi|229687370|gb|EEO79445.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
          str. India 195]
 gi|229695680|gb|EEO85727.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis
          str. PEXU2]
 gi|229705729|gb|EEO91738.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides A]
 gi|270337132|gb|EFA47909.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|320017194|gb|ADW00766.1| major cold shock protein Cspa2 [Yersinia pestis biovar Medievalis
          str. Harbin 35]
          Length = 70

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PAAVNVIAL 70


>gi|26988254|ref|NP_743679.1| cold shock protein CspA [Pseudomonas putida KT2440]
 gi|148549408|ref|YP_001269510.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida F1]
 gi|167032140|ref|YP_001667371.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida GB-1]
 gi|325278118|ref|ZP_08143630.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
 gi|24982997|gb|AAN67143.1|AE016343_3 cold shock protein CspA [Pseudomonas putida KT2440]
 gi|148513466|gb|ABQ80326.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
 gi|166858628|gb|ABY97035.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1]
 gi|313500255|gb|ADR61621.1| CspA [Pseudomonas putida BIRD-1]
 gi|324096743|gb|EGB95077.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
          Length = 69

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFI  E     G DVF+H  A+   G   L EGQ V Y  VQ   
Sbjct: 4  RETGNVKWFNDAKGYGFIQRE----GGADVFVHYRAIRGEGHRTLVEGQRVEYACVQGQK 59

Query: 62 NGKYSAENL 70
               AE++
Sbjct: 60 G--LQAEDV 66


>gi|291280012|ref|YP_003496847.1| cold shock protein [Deferribacter desulfuricans SSM1]
 gi|290754714|dbj|BAI81091.1| cold shock protein [Deferribacter desulfuricans SSM1]
          Length = 66

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFIT     ++G DVF+H +++   G  +L EG+ V ++ V+   
Sbjct: 1  MREGTVKWFNDSKGYGFIT----EDNGQDVFVHHTSIQKDGFKSLAEGERVKFE-VEKSP 55

Query: 62 NGKYSAENLKL 72
           G  +   + L
Sbjct: 56 KGLAAINVVSL 66


>gi|331006239|ref|ZP_08329559.1| Cold shock protein CspE [gamma proteobacterium IMCC1989]
 gi|330419928|gb|EGG94274.1| Cold shock protein CspE [gamma proteobacterium IMCC1989]
          Length = 69

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF H SA+ S G   L EGQ V +  V +   G
Sbjct: 6  TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAIVSDGFKTLMEGQKVQF-VVTDGQKG 60

Query: 64 KYSAENLKL 72
            +   + +
Sbjct: 61 PQAENIVAI 69


>gi|293375456|ref|ZP_06621737.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
          PC909]
 gi|325836869|ref|ZP_08166275.1| cold shock-like protein CspG [Turicibacter sp. HGF1]
 gi|292646009|gb|EFF64038.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis
          PC909]
 gi|325491115|gb|EGC93406.1| cold shock-like protein CspG [Turicibacter sp. HGF1]
          Length = 66

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFIT     E+G DVF+H SA+ + G   L EGQ VT++  +     
Sbjct: 2  KGTVKWFNEEKGFGFIT----AENGSDVFVHFSAIKADGFKRLEEGQKVTFETAEGQRG- 56

Query: 64 KYSAENLKL 72
             A+N+ +
Sbjct: 57 -LQAQNVVV 64


>gi|148652578|ref|YP_001279671.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          sp. PRwf-1]
 gi|148571662|gb|ABQ93721.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1]
          Length = 71

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G++KW+N  KG+GFI  E    SG+D+F+H  A+   G  +L +GQ V +  V    
Sbjct: 4  REQGTVKWFNDAKGFGFIQRE----SGEDIFVHFRAIQGDGYRSLQDGQKVEF-IVTEGE 58

Query: 62 NGKYSAENLKL 72
           G  + E  K+
Sbjct: 59 KGLQAEEVTKV 69


>gi|320139464|gb|EFW31338.1| cold-shock DNA-binding domain protein [Staphylococcus aureus
          subsp. aureus MRSA131]
          Length = 66

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E    +G+DVF+H S +   G  +L +GQ V +D V +  
Sbjct: 1  MNNGTVKWFNSEKGFGFIERE----NGNDVFVHFSNIVGEGYKSLEDGQSVDFDIV-DGQ 55

Query: 62 NGKYSAENLKL 72
           G+ +   + +
Sbjct: 56 RGEQATNVVAV 66


>gi|126664472|ref|ZP_01735456.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
          ELB17]
 gi|126630798|gb|EBA01412.1| cold-shock DNA-binding domain family protein [Marinobacter sp.
          ELB17]
          Length = 68

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT E     G DVF+H S++   G   L EGQ V +   Q     
Sbjct: 5  TGTVKFFNEAKGFGFITRE----GGPDVFVHYSSIQGGGFKTLAEGQQVEFTVTQGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+  V
Sbjct: 60 -PQAENVVAV 68


>gi|119947299|ref|YP_944979.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119865903|gb|ABM05380.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 69

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI       SG DVF H SA+AS G   L EGQ V +   Q     
Sbjct: 6  QGTVKWFNEAKGFGFIEQ----ASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKGP 61

Query: 64 K 64
          +
Sbjct: 62 Q 62


>gi|77362295|ref|YP_341869.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76877206|emb|CAI89423.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 69

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI  E    SG DVF H SA++  G   L EGQ V +   Q     
Sbjct: 6  TGSVKWFNEAKGFGFIEQE----SGADVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 61 -PQAENIVAI 69


>gi|328955745|ref|YP_004373078.1| cold-shock DNA-binding protein family [Coriobacterium glomerans
          PW2]
 gi|328456069|gb|AEB07263.1| cold-shock DNA-binding protein family [Coriobacterium glomerans
          PW2]
          Length = 76

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 2  VHRGSIK-WYNPDKGYGFITPEGSTESGD--DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G++K  +  +KGYGFITP+ + E G   DVF+H SA+   G  +L EG  V ++  +
Sbjct: 1  MATGTLKKSFFREKGYGFITPDDAPEDGSKSDVFVHFSALQMDGFKSLDEGDRVEFELGE 60

Query: 59 NDANGKYSAENLKLV 73
              G+  A N++ +
Sbjct: 61 GKKPGETQAINVRKI 75


>gi|325106571|ref|YP_004267647.1| putative cold-shock protein C [Staphylococcus simulans bv.
          staphylolyticus]
 gi|324033744|gb|ADY16745.1| putative cold-shock protein C [Staphylococcus simulans bv.
          staphylolyticus]
          Length = 66

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N +KG+GFI  E    +G DVF+H S +A  G  +L +GQ V +D V +  
Sbjct: 1  MNNGTVKWFNSEKGFGFIERE----NGSDVFVHFSGIAGEGYKSLEDGQNVDFDIV-DGQ 55

Query: 62 NGKYSAENLKL 72
           G+ +   + +
Sbjct: 56 RGEQATNVVAI 66


>gi|266625124|ref|ZP_06118059.1| conserved domain protein [Clostridium hathewayi DSM 13479]
 gi|288862975|gb|EFC95273.1| conserved domain protein [Clostridium hathewayi DSM 13479]
          Length = 65

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFI+     E G+DVF+H S +   G  +L EG  V +D V + A G
Sbjct: 2  KGTVKWFNNQKGYGFIS----DEQGNDVFVHYSGLNMDGFKSLDEGASVEFDVV-DGAKG 56

Query: 64 KYSAENLKL 72
            +    KL
Sbjct: 57 PQAVNVTKL 65


>gi|227355251|ref|ZP_03839653.1| CspA family cold shock transcriptional regulator [Proteus
          mirabilis ATCC 29906]
 gi|227164624|gb|EEI49491.1| CspA family cold shock transcriptional regulator [Proteus
          mirabilis ATCC 29906]
          Length = 66

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V++   +N   G
Sbjct: 2  TGTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDNFKTLAEGQQVSFTM-ENGMKG 57

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 58 PAAGNVVAL 66


>gi|197118603|ref|YP_002139030.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|253700626|ref|YP_003021815.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
 gi|197087963|gb|ACH39234.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem]
 gi|251775476|gb|ACT18057.1| cold-shock DNA-binding domain protein [Geobacter sp. M21]
          Length = 66

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  E    +G+DVF+H SA+   G  +LTEG  VT++ V+   
Sbjct: 1  MVNGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAINGDGFKSLTEGDSVTFEIVKG-P 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 KGLQAANV 63


>gi|152997623|ref|YP_001342458.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
          MWYL1]
 gi|150838547|gb|ABR72523.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
          MWYL1]
          Length = 69

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT +     G DVF+H SA+ ++G   L EGQ V +   Q    G
Sbjct: 6  TGTVKFFNETKGFGFITQDQ----GPDVFVHFSAINTSGFKTLAEGQKVEFQVAQG-KKG 60

Query: 64 KYSAENLKLV 73
             A+N+  +
Sbjct: 61 PE-AQNVTPL 69


>gi|88859394|ref|ZP_01134034.1| Cold shock protein [Pseudoalteromonas tunicata D2]
 gi|88818411|gb|EAR28226.1| Cold shock protein [Pseudoalteromonas tunicata D2]
          Length = 69

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI       SG DVF H SA++  G   L EGQ V +   +     
Sbjct: 6  TGTVKWFNEAKGFGFIEQ----ASGPDVFAHFSAISGDGFKTLAEGQKVQFVVTKGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 61 -PQAENIVVL 69


>gi|116051280|ref|YP_789888.1| cold acclimation protein B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152985784|ref|YP_001347238.1| cold acclimation protein B [Pseudomonas aeruginosa PA7]
 gi|254241955|ref|ZP_04935277.1| cold acclimation protein B [Pseudomonas aeruginosa 2192]
 gi|296388237|ref|ZP_06877712.1| cold acclimation protein B [Pseudomonas aeruginosa PAb1]
 gi|313108607|ref|ZP_07794608.1| cold acclimation protein B [Pseudomonas aeruginosa 39016]
 gi|115586501|gb|ABJ12516.1| cold acclimation protein B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195333|gb|EAZ59396.1| cold acclimation protein B [Pseudomonas aeruginosa 2192]
 gi|150960942|gb|ABR82967.1| cold acclimation protein B [Pseudomonas aeruginosa PA7]
 gi|310881110|gb|EFQ39704.1| cold acclimation protein B [Pseudomonas aeruginosa 39016]
          Length = 69

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFITPE    SG+D+F+H  ++   G  +L EGQ V++  V    
Sbjct: 4  RQNGTVKWFNDAKGFGFITPE----SGNDLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++++
Sbjct: 60 G--LQADEVQVI 69


>gi|289665681|ref|ZP_06487262.1| major cold shock protein [Xanthomonas campestris pv. vasculorum
          NCPPB702]
 gi|289671305|ref|ZP_06492380.1| major cold shock protein [Xanthomonas campestris pv. musacearum
          NCPPB4381]
          Length = 69

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N  KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGIVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++ V
Sbjct: 60 G--MQADQVQAV 69


>gi|90415487|ref|ZP_01223421.1| Cold shock protein [marine gamma proteobacterium HTCC2207]
 gi|90332810|gb|EAS47980.1| Cold shock protein [marine gamma proteobacterium HTCC2207]
          Length = 69

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  E     G DVF+H SA+ + G  +L EGQ VT +  Q      
Sbjct: 7  GTVKWFNDSKGFGFIEQE----GGGDVFVHHSAIQADGFKSLKEGQAVTMEVTQGQKG-- 60

Query: 65 YSAENL 70
            AEN+
Sbjct: 61 AQAENV 66


>gi|23502382|ref|NP_698509.1| cold-shock family protein [Brucella suis 1330]
 gi|62290402|ref|YP_222195.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82700324|ref|YP_414898.1| cold shock DNA-binding domain-containing protein [Brucella
          melitensis biovar Abortus 2308]
 gi|161619460|ref|YP_001593347.1| hypothetical protein BCAN_A1551 [Brucella canis ATCC 23365]
 gi|163843768|ref|YP_001628172.1| hypothetical protein BSUIS_A1571 [Brucella suis ATCC 23445]
 gi|189024628|ref|YP_001935396.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
 gi|225852991|ref|YP_002733224.1| hypothetical protein BMEA_A1565 [Brucella melitensis ATCC 23457]
 gi|254689700|ref|ZP_05152954.1| cold-shock family protein [Brucella abortus bv. 6 str. 870]
 gi|254694190|ref|ZP_05156018.1| cold-shock family protein [Brucella abortus bv. 3 str. Tulya]
 gi|254697843|ref|ZP_05159671.1| cold-shock family protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254702232|ref|ZP_05164060.1| cold-shock family protein [Brucella suis bv. 5 str. 513]
 gi|254704767|ref|ZP_05166595.1| cold-shock family protein [Brucella suis bv. 3 str. 686]
 gi|254708180|ref|ZP_05170008.1| cold-shock family protein [Brucella pinnipedialis M163/99/10]
 gi|254710551|ref|ZP_05172362.1| cold-shock family protein [Brucella pinnipedialis B2/94]
 gi|254714734|ref|ZP_05176545.1| cold-shock family protein [Brucella ceti M644/93/1]
 gi|254717794|ref|ZP_05179605.1| cold-shock family protein [Brucella ceti M13/05/1]
 gi|254719549|ref|ZP_05181360.1| cold-shock family protein [Brucella sp. 83/13]
 gi|254730734|ref|ZP_05189312.1| cold-shock family protein [Brucella abortus bv. 4 str. 292]
 gi|256032045|ref|ZP_05445659.1| cold-shock family protein [Brucella pinnipedialis M292/94/1]
 gi|256045136|ref|ZP_05448036.1| cold-shock family protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061567|ref|ZP_05451709.1| cold-shock family protein [Brucella neotomae 5K33]
 gi|256114072|ref|ZP_05454842.1| cold-shock family protein [Brucella melitensis bv. 3 str. Ether]
 gi|256160241|ref|ZP_05457935.1| cold-shock family protein [Brucella ceti M490/95/1]
 gi|256255447|ref|ZP_05460983.1| cold-shock family protein [Brucella ceti B1/94]
 gi|256257951|ref|ZP_05463487.1| cold-shock family protein [Brucella abortus bv. 9 str. C68]
 gi|256263527|ref|ZP_05466059.1| cold-shock family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|256369930|ref|YP_003107441.1| cold-shock family protein [Brucella microti CCM 4915]
 gi|260169180|ref|ZP_05755991.1| cold-shock family protein [Brucella sp. F5/99]
 gi|260546939|ref|ZP_05822678.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus NCTC 8038]
 gi|260565265|ref|ZP_05835749.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. 16M]
 gi|260565989|ref|ZP_05836459.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 4 str. 40]
 gi|260755234|ref|ZP_05867582.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 6 str. 870]
 gi|260758454|ref|ZP_05870802.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 4 str. 292]
 gi|260762280|ref|ZP_05874623.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 2 str. 86/8/59]
 gi|260884248|ref|ZP_05895862.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 9 str. C68]
 gi|261214497|ref|ZP_05928778.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 3 str. Tulya]
 gi|261219643|ref|ZP_05933924.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M13/05/1]
 gi|261222653|ref|ZP_05936934.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          B1/94]
 gi|261315687|ref|ZP_05954884.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M163/99/10]
 gi|261318125|ref|ZP_05957322.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis B2/94]
 gi|261322531|ref|ZP_05961728.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M644/93/1]
 gi|261325575|ref|ZP_05964772.1| cold-shock DNA-binding domain-containing protein [Brucella
          neotomae 5K33]
 gi|261752805|ref|ZP_05996514.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 5 str. 513]
 gi|261755464|ref|ZP_05999173.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 3 str. 686]
 gi|261758694|ref|ZP_06002403.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          F5/99]
 gi|261885343|ref|ZP_06009382.1| cold-shock family protein [Campylobacter fetus subsp. venerealis
          str. Azul-94]
 gi|265984558|ref|ZP_06097293.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          83/13]
 gi|265989155|ref|ZP_06101712.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M292/94/1]
 gi|265991570|ref|ZP_06104127.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. Rev.1]
 gi|265995406|ref|ZP_06107963.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 3 str. Ether]
 gi|265998617|ref|ZP_06111174.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M490/95/1]
 gi|294852832|ref|ZP_06793505.1| major cold shock protein [Brucella sp. NVSL 07-0026]
 gi|306838489|ref|ZP_07471330.1| cold shock protein [Brucella sp. NF 2653]
 gi|306844515|ref|ZP_07477104.1| cold shock protein [Brucella sp. BO1]
 gi|23348366|gb|AAN30424.1| cold-shock family protein [Brucella suis 1330]
 gi|62196534|gb|AAX74834.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616425|emb|CAJ11488.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus
          2308]
 gi|161336271|gb|ABX62576.1| Hypothetical protein BCAN_A1551 [Brucella canis ATCC 23365]
 gi|163674491|gb|ABY38602.1| Hypothetical protein BSUIS_A1571 [Brucella suis ATCC 23445]
 gi|189020200|gb|ACD72922.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
 gi|225641356|gb|ACO01270.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|256000093|gb|ACU48492.1| cold-shock family protein [Brucella microti CCM 4915]
 gi|260095989|gb|EEW79866.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus NCTC 8038]
 gi|260151333|gb|EEW86427.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. 16M]
 gi|260155507|gb|EEW90587.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 4 str. 40]
 gi|260668772|gb|EEX55712.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 4 str. 292]
 gi|260672712|gb|EEX59533.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 2 str. 86/8/59]
 gi|260675342|gb|EEX62163.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 6 str. 870]
 gi|260873776|gb|EEX80845.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 9 str. C68]
 gi|260916104|gb|EEX82965.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 3 str. Tulya]
 gi|260921237|gb|EEX87890.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          B1/94]
 gi|260924732|gb|EEX91300.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M13/05/1]
 gi|261295221|gb|EEX98717.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M644/93/1]
 gi|261297348|gb|EEY00845.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis B2/94]
 gi|261301555|gb|EEY05052.1| cold-shock DNA-binding domain-containing protein [Brucella
          neotomae 5K33]
 gi|261304713|gb|EEY08210.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M163/99/10]
 gi|261738678|gb|EEY26674.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          F5/99]
 gi|261742558|gb|EEY30484.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 5 str. 513]
 gi|261745217|gb|EEY33143.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 3 str. 686]
 gi|262553241|gb|EEZ09075.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M490/95/1]
 gi|262766519|gb|EEZ12308.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 3 str. Ether]
 gi|263002354|gb|EEZ14929.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. Rev.1]
 gi|263093556|gb|EEZ17581.1| cold-shock family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264661352|gb|EEZ31613.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M292/94/1]
 gi|264663150|gb|EEZ33411.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          83/13]
 gi|294821421|gb|EFG38420.1| major cold shock protein [Brucella sp. NVSL 07-0026]
 gi|306275126|gb|EFM56882.1| cold shock protein [Brucella sp. BO1]
 gi|306406453|gb|EFM62691.1| cold shock protein [Brucella sp. NF 2653]
          Length = 71

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N +KG+GFI P+   + G D+F+H SAV ++GL  L + Q V+Y+   + 
Sbjct: 1  MAQTGQVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLPGLADNQKVSYETEPDR 57

Query: 61 ANGKYSAENLKL 72
                A N+ +
Sbjct: 58 RGKGPKAVNITI 69


>gi|39995301|ref|NP_951252.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA]
 gi|39982063|gb|AAR33525.1| cold-shock domain family protein [Geobacter sulfurreducens PCA]
 gi|298504306|gb|ADI83029.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens
          KN400]
          Length = 66

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  E    +G+DVF H SA++  G  +LTEG  VT++  +   
Sbjct: 1  MVNGTVKWFNDSKGFGFLEQE----NGEDVFCHFSAISGDGFKSLTEGDRVTFEITKG-P 55

Query: 62 NGKYSAENLK 71
           G  +A   +
Sbjct: 56 KGLQAANVTR 65


>gi|296113319|ref|YP_003627257.1| cold-shock DNA-binding protein family [Moraxella catarrhalis RH4]
 gi|295921013|gb|ADG61364.1| cold-shock DNA-binding protein family [Moraxella catarrhalis RH4]
          Length = 91

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G +KW+N  KG+GFI  E     G+DVF+H  A+   G  +L EGQ V +  V     
Sbjct: 27 EQGVVKWFNDAKGFGFIQRET----GEDVFVHFRAIQGEGYRSLKEGQAVEF-VVTTGDK 81

Query: 63 GKYSAENLKL 72
          G  + E  KL
Sbjct: 82 GLQAEEVTKL 91


>gi|330963182|gb|EGH63442.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          actinidiae str. M302091]
          Length = 70

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59

Query: 62 N 62
           
Sbjct: 60 G 60


>gi|311694973|gb|ADP97846.1| cold-shock DNA-binding domain protein [marine bacterium HP15]
          Length = 103

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW+N  KGYGFI  +G ++   D+F H S+V   G   L  GQ VT+D   +D 
Sbjct: 1  MPRGKVKWFNNAKGYGFIIEDGCSD---DLFAHFSSVQMDGYKTLKAGQAVTFDKKPSDK 57

Query: 62 NGKYSAENLKLVPKS 76
                  + +VP  
Sbjct: 58 G----IHAVNIVPDE 68


>gi|153011838|ref|YP_001373051.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
          anthropi ATCC 49188]
 gi|151563726|gb|ABS17222.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
          anthropi ATCC 49188]
          Length = 68

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKG+GFITPE     G DVF+H S +A AG+ +L EGQ V+Y+  Q+  
Sbjct: 1  MATGTVKFFNQDKGFGFITPES---GGSDVFVHVSGLAQAGV-SLGEGQKVSYEIGQDRK 56

Query: 62 NGKYSAENLKLV 73
           GK  AEN++ +
Sbjct: 57 TGKAKAENVRPI 68


>gi|330962175|gb|EGH62435.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 70

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVSVQGQK 59

Query: 62 N 62
           
Sbjct: 60 G 60


>gi|71278403|ref|YP_271177.1| cold shock DNA-binding domain-containing protein [Colwellia
          psychrerythraea 34H]
 gi|71144143|gb|AAZ24616.1| cold-shock DNA-binding domain family protein [Colwellia
          psychrerythraea 34H]
          Length = 68

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H +A+   G   L EGQ V +         
Sbjct: 5  TGTVKWFNEAKGFGFIEQE----NGPDVFAHFNAIVGDGFKTLAEGQKVEFTVTDGQKG- 59

Query: 64 KYSAENL 70
             AEN+
Sbjct: 60 -PQAENI 65


>gi|90580456|ref|ZP_01236262.1| putative Cold shock-like protein [Vibrio angustum S14]
 gi|90438365|gb|EAS63550.1| putative Cold shock-like protein [Vibrio angustum S14]
          Length = 70

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          + G +KW+N DKG+GFIT +     G DVF+H  A+ S G   L +GQ V++D  Q    
Sbjct: 5  NTGLVKWFNEDKGFGFITQD---NGGADVFVHFQAIVSEGFKTLMDGQKVSFDVEQGQ-K 60

Query: 63 GKYSAENLKL 72
          G  ++  + L
Sbjct: 61 GLQASNVVAL 70


>gi|332978230|gb|EGK14961.1| cold shock protein CspA [Psychrobacter sp. 1501(2011)]
          Length = 71

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G++KW+N  KG+GFI  E    SG+D+F+H  A+   G  +L +GQ V +  V    
Sbjct: 4  REQGTVKWFNDAKGFGFIQRE----SGEDIFVHFRAIQGDGYRSLQDGQKVEF-VVTEGE 58

Query: 62 NGKYSAENLKL 72
           G  + E  K+
Sbjct: 59 KGLQAEEVTKV 69


>gi|326794630|ref|YP_004312450.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
 gi|326545394|gb|ADZ90614.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
          Length = 84

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +HRGS+KW+N  KGYGFI  +   E   D+F+H SA+   G   L  GQ VT+D      
Sbjct: 1  MHRGSVKWFNNAKGYGFIVSDSFDE---DLFIHYSAINVEGYKTLKAGQSVTFDVSPGKR 57

Query: 62 NGKYSAENLKLVPKSS 77
               A ++  V +++
Sbjct: 58 G--LHAVDITPVDQAT 71


>gi|149187680|ref|ZP_01865977.1| cold shock protein [Vibrio shilonii AK1]
 gi|148838560|gb|EDL55500.1| cold shock protein [Vibrio shilonii AK1]
          Length = 69

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H S + + G   L EGQ V +   Q     
Sbjct: 6  TGTVKWFNETKGFGFIQQE----NGPDVFAHFSNIKADGFRTLAEGQKVAFKVTQGQKG- 60

Query: 64 KYSAENLKLV 73
             AE + LV
Sbjct: 61 -PQAEEITLV 69


>gi|262372339|ref|ZP_06065618.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
 gi|262312364|gb|EEY93449.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
          Length = 73

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI     +++G DVF H S +A+ G   L EGQ V +D +Q     
Sbjct: 6  NGTVKWFNETKGFGFIQ----SDNGQDVFAHYSEIANNGFKTLFEGQRVKFDVMQGKKG- 60

Query: 64 KYSAENLKLV 73
             A N+ ++
Sbjct: 61 -LQASNISVL 69


>gi|170723258|ref|YP_001750946.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida W619]
 gi|169761261|gb|ACA74577.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619]
          Length = 69

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFI  E     G DVF+H  A+   G   L EGQ V Y  VQ   
Sbjct: 4  RETGNVKWFNDAKGFGFIQRE----GGADVFVHYRAIRGEGHRTLVEGQRVEYSCVQGQK 59

Query: 62 NGKYSAENL 70
               AE++
Sbjct: 60 G--LQAEDV 66


>gi|320105861|ref|YP_004181451.1| cold-shock DNA-binding domain-containing protein [Terriglobus
          saanensis SP1PR4]
 gi|319924382|gb|ADV81457.1| cold-shock DNA-binding domain protein [Terriglobus saanensis
          SP1PR4]
          Length = 66

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GF++      +G+DVF+H SA+ S+G  +L EGQ V ++ V+   
Sbjct: 1  MEQGTVKWFNDAKGFGFVS----RANGEDVFVHYSAITSSGFKSLQEGQAVQFNVVKGPK 56

Query: 62 NGKYSAENLKLV 73
             + A +++ +
Sbjct: 57 G--WQASDVQPL 66


>gi|257067904|ref|YP_003154159.1| cold-shock DNA-binding protein family [Brachybacterium faecium
          DSM 4810]
 gi|256558722|gb|ACU84569.1| cold-shock DNA-binding protein family [Brachybacterium faecium
          DSM 4810]
          Length = 67

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G + W+N DKGYGFI PE   +   DVF H SA+  +G  +L E Q V +D  Q   
Sbjct: 1  MATGIVTWFNSDKGYGFIAPE---DGSADVFAHFSAIVGSGRRDLEENQRVEFDVEQGPK 57

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 58 G--LQATNIR 65


>gi|163794316|ref|ZP_02188288.1| cold-shock DNA-binding domain protein [alpha proteobacterium
          BAL199]
 gi|159180484|gb|EDP65005.1| cold-shock DNA-binding domain protein [alpha proteobacterium
          BAL199]
          Length = 68

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI PE   +   DVFLH SAV  AGL +  EGQ V Y+  ++  
Sbjct: 1  MAVGTVKFFNTTKGFGFIQPE---DGSKDVFLHVSAVERAGLRSPNEGQKVQYEI-ESGR 56

Query: 62 NGKYSAENLK 71
          +G+ SA N+ 
Sbjct: 57 DGRTSAGNIS 66


>gi|15598462|ref|NP_251956.1| cold acclimation protein B [Pseudomonas aeruginosa PAO1]
 gi|107102797|ref|ZP_01366715.1| hypothetical protein PaerPA_01003865 [Pseudomonas aeruginosa
          PACS2]
 gi|218890541|ref|YP_002439405.1| cold acclimation protein B [Pseudomonas aeruginosa LESB58]
 gi|254236229|ref|ZP_04929552.1| cold acclimation protein B [Pseudomonas aeruginosa C3719]
 gi|2493770|sp|P95459|CSPA_PSEAE RecName: Full=Major cold shock protein CspA
 gi|9949391|gb|AAG06654.1|AE004749_3 cold acclimation protein B [Pseudomonas aeruginosa PAO1]
 gi|1778825|gb|AAB40922.1| major cold shock protein CspA [Pseudomonas aeruginosa PAO1]
 gi|126168160|gb|EAZ53671.1| cold acclimation protein B [Pseudomonas aeruginosa C3719]
 gi|218770764|emb|CAW26529.1| cold acclimation protein B [Pseudomonas aeruginosa LESB58]
          Length = 69

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFITPE    SG+D+F+H  ++   G  +L EGQ V++  V    
Sbjct: 4  RQNGTVKWFNDAKGFGFITPE----SGNDLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ +++V
Sbjct: 60 G--LQADEVQVV 69


>gi|116750635|ref|YP_847322.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116699699|gb|ABK18887.1| cold-shock DNA-binding protein family [Syntrophobacter
          fumaroxidans MPOB]
          Length = 67

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI     T    DVF+H SA+A+ G  +L+EG+ VT+D  +   
Sbjct: 1  MSEGRVKWFNDKKGYGFIE----TTDQGDVFVHYSAIAAEGFRSLSEGERVTFDVERGPK 56

Query: 62 NGKYSAENLKLVP 74
               A N+K V 
Sbjct: 57 G--PQAVNVKKVE 67


>gi|327481387|gb|AEA84697.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 69

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFI       +G DVF+H  A+   G  +L EGQ V +  +Q   
Sbjct: 4  RETGTVKWFNDAKGYGFIQ----RGNGADVFVHYRAIRGDGHRSLAEGQQVEFSVIQGQK 59

Query: 62 NGKYSAENL 70
               AE++
Sbjct: 60 G--LQAEDV 66


>gi|254787663|ref|YP_003075092.1| cold shock DNA-binding domain-containing protein [Teredinibacter
          turnerae T7901]
 gi|237684629|gb|ACR11893.1| cold shock DNA-binding domain protein [Teredinibacter turnerae
          T7901]
          Length = 69

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI+      SG DVF H SA+ S+G   LTEGQ V +    +   G
Sbjct: 6  TGTVKWFNESKGFGFISQ----PSGPDVFAHFSAIESSGFKTLTEGQQVEFTVT-DGQKG 60

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 61 PQAQNIVAL 69


>gi|329296308|ref|ZP_08253644.1| CspB [Plautia stali symbiont]
          Length = 70

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N +KG+GFI+PE   +S  DVF+H SA+      +L +GQ V    V+N + G 
Sbjct: 7  GTVKWFNAEKGFGFISPE---DSSKDVFVHFSAIQGTDFRSLDDGQKVELS-VENGSKGP 62

Query: 65 YSAENLK 71
           SA N+K
Sbjct: 63 -SAVNVK 68


>gi|299144112|ref|ZP_07037192.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str.
          F0131]
 gi|298518597|gb|EFI42336.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str.
          F0131]
          Length = 65

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFIT     E G DVF H S +   G   L EGQ V +D V+ +   
Sbjct: 2  KGKVKWFNGEKGFGFIT----AEDGKDVFAHFSQIQKEGFKTLEEGQDVEFDVVEKEKG- 56

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 57 -PQAENIVIL 65


>gi|85715217|ref|ZP_01046200.1| cold shock protein [Nitrobacter sp. Nb-311A]
 gi|85697863|gb|EAQ35737.1| cold shock protein [Nitrobacter sp. Nb-311A]
          Length = 62

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 5/66 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KGYGFI PE     G DVF+H SAV  AGL +L EG  V+Y+ V N  +GK S
Sbjct: 1  MKWFNGQKGYGFIEPES---GGKDVFVHISAVERAGLGSLNEGDKVSYEVVTN--HGKES 55

Query: 67 AENLKL 72
          AENL++
Sbjct: 56 AENLRV 61


>gi|194292370|ref|YP_002008277.1| cold shock protein, transcription antiterminator, affects
          expression of rpos and uspa [Cupriavidus taiwanensis
          LMG 19424]
 gi|193226274|emb|CAQ72223.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Cupriavidus taiwanensis
          LMG 19424]
          Length = 67

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H S +  +G  +L EGQ V Y       
Sbjct: 1  METGTVKWFNDSKGFGFITPDA---GGNDLFAHFSEIQGSGFKSLAEGQKVRY-VAGVGQ 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPAA 61


>gi|168184293|ref|ZP_02618957.1| major cold shock protein [Clostridium botulinum Bf]
 gi|187779961|ref|ZP_02996434.1| hypothetical protein CLOSPO_03557 [Clostridium sporogenes ATCC
          15579]
 gi|237794738|ref|YP_002862290.1| major cold shock protein CspA [Clostridium botulinum Ba4 str.
          657]
 gi|182672649|gb|EDT84610.1| major cold shock protein [Clostridium botulinum Bf]
 gi|187773586|gb|EDU37388.1| hypothetical protein CLOSPO_03557 [Clostridium sporogenes ATCC
          15579]
 gi|229263133|gb|ACQ54166.1| major cold shock protein CspA [Clostridium botulinum Ba4 str.
          657]
          Length = 67

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          +  G++KW+N +KG+GFI  EG      DVF+H SA+       NL EGQ V ++ V+  
Sbjct: 1  MKTGTVKWFNSEKGFGFIEVEGE----KDVFVHFSAIQGDEPRKNLEEGQKVEFE-VEEG 55

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 56 QKGPQAANVIKL 67


>gi|310829592|ref|YP_003961949.1| cold shock protein [Eubacterium limosum KIST612]
 gi|308741326|gb|ADO38986.1| cold shock protein [Eubacterium limosum KIST612]
          Length = 66

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFI+ E     GDDVF H S++   G   L +G  VT+D  Q   
Sbjct: 1  MNNGTVKWFNGDKGFGFISRE----DGDDVFEHFSSIVGDGFKTLNDGDRVTFDTEQGPR 56

Query: 62 NGKYSAENL 70
               A+N+
Sbjct: 57 G--LQAKNV 63


>gi|257454785|ref|ZP_05620036.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
 gi|257447718|gb|EEV22710.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
          Length = 70

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  +     G DVF H S +AS+G   L+EGQ V++   Q     
Sbjct: 6  NGTVKWFNESKGFGFIEQD---NGGKDVFAHYSQIASSGFKTLSEGQRVSFVVTQGQKG- 61

Query: 64 KYSAENLKLV 73
             A N+  +
Sbjct: 62 -DQASNIVAI 70


>gi|328953011|ref|YP_004370345.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
          DSM 11109]
 gi|328453335|gb|AEB09164.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
          DSM 11109]
          Length = 68

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N  KG+GFI+ E    +G DVF+H S++ S G  +L+E   V ++ VQ  
Sbjct: 1  MKETGRVKWFNDSKGFGFISRE----NGPDVFVHHSSIQSKGFRSLSENDEVEFEVVQGQ 56

Query: 61 ANGKYSAENLKL 72
            G  +   +K+
Sbjct: 57 -KGLQAQNVVKI 67


>gi|166712680|ref|ZP_02243887.1| major cold shock protein [Xanthomonas oryzae pv. oryzicola
          BLS256]
          Length = 71

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N  KG+GFI+ E    +G+DVF+H  A+   G  +L EGQ V++  VQ   
Sbjct: 6  RENGLVKWFNDAKGFGFISRE----NGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQK 61

Query: 62 NGKYSAENLKLV 73
               A+ ++++
Sbjct: 62 G--LQADAVQVI 71


>gi|153874948|ref|ZP_02002962.1| Cold shock protein [Beggiatoa sp. PS]
 gi|152068588|gb|EDN67038.1| Cold shock protein [Beggiatoa sp. PS]
          Length = 71

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  E   E   DVF+H +++   G  +L EGQ VT D  Q      
Sbjct: 8  GTVKWFNDSKGFGFIEQE---EGQPDVFVHHTSIQGEGFKSLQEGQKVTMDVTQGQKG-- 62

Query: 65 YSAENL 70
            AEN+
Sbjct: 63 LQAENV 68


>gi|238762682|ref|ZP_04623651.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
 gi|238698987|gb|EEP91735.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
          Length = 80

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q     
Sbjct: 16 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQGQKG- 71

Query: 64 KYSAENL 70
            SA N+
Sbjct: 72 -PSAVNV 77


>gi|224282734|ref|ZP_03646056.1| cold-shock DNA-binding domain protein [Bifidobacterium bifidum
          NCIMB 41171]
 gi|311064055|ref|YP_003970780.1| cold shock protein CspA [Bifidobacterium bifidum PRL2010]
 gi|310866374|gb|ADP35743.1| CspA Cold shock protein [Bifidobacterium bifidum PRL2010]
          Length = 67

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K+++  KGYGFIT +     GDDVF+H S + + G   L EG  V Y+  +   
Sbjct: 1  MAQGTVKFFSAGKGYGFITSDA---GGDDVFVHYSVIQADGFKTLNEGDKVEYE-AERGP 56

Query: 62 NGKYSAENLKL 72
           G  + + +KL
Sbjct: 57 KGMQATKVVKL 67


>gi|21231725|ref|NP_637642.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66768149|ref|YP_242911.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|188991286|ref|YP_001903296.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          B100]
 gi|21113428|gb|AAM41566.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66573481|gb|AAY48891.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|167733046|emb|CAP51244.1| cold shock protein [Xanthomonas campestris pv. campestris]
          Length = 69

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N  KG+GFITPE    SG D+F+H  A+   G  +L EGQ V++  VQ   
Sbjct: 4  RQNGVVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVSFVAVQGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ ++ V
Sbjct: 60 G--MQADQVQAV 69


>gi|312137854|ref|YP_004005190.1| cold shock protein [Rhodococcus equi 103S]
 gi|325676045|ref|ZP_08155727.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
 gi|311887193|emb|CBH46502.1| cold shock protein [Rhodococcus equi 103S]
 gi|325553085|gb|EGD22765.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
          Length = 67

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI P   ++   D+F+H S + S G  +L E Q V ++  Q  A
Sbjct: 1  MAEGTVKWFNSEKGFGFIAP---SDGSADLFVHYSEIQSGGFRSLEENQHVRFEIGQG-A 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPQA 61


>gi|294053655|ref|YP_003547313.1| cold-shock DNA-binding domain protein [Coraliomargarita
          akajimensis DSM 45221]
 gi|293612988|gb|ADE53143.1| cold-shock DNA-binding domain protein [Coraliomargarita
          akajimensis DSM 45221]
          Length = 67

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++ +KGYGFI P+   +   D+F+H S + S G   L +GQ V ++      
Sbjct: 1  MSTGTVKWFDAEKGYGFIQPD---DGSKDLFVHHSEIQSDGYAKLEDGQKVEFEVGSGQK 57

Query: 62 NG 63
            
Sbjct: 58 GP 59


>gi|297191503|ref|ZP_06908901.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197722057|gb|EDY65965.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 67

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q   
Sbjct: 1  MASGVVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELLEGQKVNFDIAQGQK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|149927840|ref|ZP_01916091.1| cold-shock DNA-binding domain family protein [Limnobacter sp.
          MED105]
 gi|149823462|gb|EDM82693.1| cold-shock DNA-binding domain family protein [Limnobacter sp.
          MED105]
          Length = 69

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K++N  KG+GFI+ E    +G DVF+H SA+   G   L EGQ V++   Q     
Sbjct: 6  TGQVKFFNESKGFGFISRE----NGPDVFVHFSAIQGNGFKTLAEGQKVSFTVTQGQKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 61 -PQAENVTAL 69


>gi|71065502|ref|YP_264229.1| cold-shock DNA-binding protein family protein [Psychrobacter
          arcticus 273-4]
 gi|71038487|gb|AAZ18795.1| cold-shock DNA-binding protein family [Psychrobacter arcticus
          273-4]
          Length = 71

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G +KW+N  KG+GFI  +    SG+D+F+H  A+   G  +L +G+ V +  V+ D 
Sbjct: 4  REQGIVKWFNDSKGFGFIQRD----SGEDIFVHFRAIQGDGYRSLKDGEKVEFSVVEGDK 59

Query: 62 NGKYSAENLKLVPK 75
               AE ++ V +
Sbjct: 60 G--LQAEEVRRVEE 71


>gi|300113220|ref|YP_003759795.1| cold-shock DNA-binding domain-containing protein [Nitrosococcus
          watsonii C-113]
 gi|299539157|gb|ADJ27474.1| cold-shock DNA-binding domain protein [Nitrosococcus watsonii
          C-113]
          Length = 69

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G++KW+N  KGYGFI  E     G D+F+H  ++  +G   L EGQ V++  VQ    
Sbjct: 5  QTGTVKWFNDSKGYGFIQRE----GGSDLFVHYRSITGSGHRTLKEGQQVSFIEVQGQKG 60

Query: 63 GKYSAENLKLV 73
              A+N+ ++
Sbjct: 61 --PQADNVTVL 69


>gi|254465282|ref|ZP_05078693.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
 gi|206686190|gb|EDZ46672.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales
          bacterium Y4I]
          Length = 68

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI P+   E G DVF+H SAV  +G+  L +   + Y+  +   
Sbjct: 1  MPSGTVKWFNTTKGYGFIEPD---EGGKDVFVHISAVERSGMTGLADNMKIGYELSEGRD 57

Query: 62 NGKYSAE 68
            K +AE
Sbjct: 58 GRKMAAE 64


>gi|70728544|ref|YP_258293.1| cold-shock domain-contain protein [Pseudomonas fluorescens Pf-5]
 gi|68342843|gb|AAY90449.1| cold-shock domain family protein [Pseudomonas fluorescens Pf-5]
          Length = 82

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFI  E     G DVF+H  A+   G  +LTEGQ V Y  V+   
Sbjct: 17 RETGNVKWFNDAKGYGFIQRE----GGADVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQK 72

Query: 62 NGKYSAENL 70
               AE++
Sbjct: 73 G--LQAEDV 79


>gi|325283100|ref|YP_004255641.1| cold-shock DNA-binding domain-containing protein [Deinococcus
          proteolyticus MRP]
 gi|324314909|gb|ADY26024.1| cold-shock DNA-binding domain protein [Deinococcus proteolyticus
          MRP]
          Length = 80

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW++ +KGYGFI          DVF+H SA+ S G   L EG  V ++      
Sbjct: 1  MPQGRVKWFSVEKGYGFIE----HPGNPDVFVHYSAIQSGGFRKLNEGDEVEFEVGDGQG 56

Query: 62 NGKYSAENLKL 72
          +    A+N+ +
Sbjct: 57 DRGPQAKNVVV 67


>gi|295105906|emb|CBL03449.1| cold-shock DNA-binding protein family [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 67

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKGYGFI+ +     GDD+F+H S + + G   L E   V +     + 
Sbjct: 1  MSTGTVKWFNADKGYGFISQD----GGDDLFVHFSEIQTDGFKTLEENAHVEFTVAVGN- 55

Query: 62 NGKYSAENL 70
          NGK  A  +
Sbjct: 56 NGKSQATMV 64


>gi|148270113|ref|YP_001244573.1| cold-shock DNA-binding domain-containing protein [Thermotoga
          petrophila RKU-1]
 gi|170288941|ref|YP_001739179.1| cold-shock DNA-binding domain-containing protein [Thermotoga sp.
          RQ2]
 gi|281412545|ref|YP_003346624.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
          RKU-10]
 gi|147735657|gb|ABQ46997.1| cold-shock DNA-binding protein family [Thermotoga petrophila
          RKU-1]
 gi|170176444|gb|ACB09496.1| cold-shock DNA-binding domain protein [Thermotoga sp. RQ2]
 gi|281373648|gb|ADA67210.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila
          RKU-10]
          Length = 66

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++  KGYGFIT +     G DVF+H SA+   G   L EGQ+V ++  Q    G
Sbjct: 2  RGKVKWFDAKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFEI-QEGKKG 56

Query: 64 KYSAEN 69
            +A  
Sbjct: 57 PQAAHV 62


>gi|167467804|ref|ZP_02332508.1| major cold shock protein Cspa1 [Yersinia pestis FV-1]
          Length = 70

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q     
Sbjct: 6  TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKG- 61

Query: 64 KYSAENL 70
            SA N+
Sbjct: 62 -PSAVNV 67


>gi|308274610|emb|CBX31209.1| Cold shock-like protein cspE [uncultured Desulfobacterium sp.]
          Length = 66

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N  KG+GFI      E G DVF+H SA+  +G   L EG  V++D  Q   
Sbjct: 1  MAKGIVKWFNDKKGFGFIE----KEEGGDVFVHHSAITMSGFRTLAEGDRVSFDVEQG-K 55

Query: 62 NGKYSAENLKL 72
           G  +   +K+
Sbjct: 56 QGPAAKNVVKI 66


>gi|166711808|ref|ZP_02243015.1| major cold shock protein [Xanthomonas oryzae pv. oryzicola
          BLS256]
          Length = 69

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ      
Sbjct: 7  GIVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQKG-- 60

Query: 65 YSAENLKLV 73
            A+ ++ V
Sbjct: 61 MQADQVQAV 69


>gi|224367563|ref|YP_002601726.1| CspL [Desulfobacterium autotrophicum HRM2]
 gi|223690279|gb|ACN13562.1| CspL [Desulfobacterium autotrophicum HRM2]
          Length = 66

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW++  KG+GFI  +     G+DVF+H +A+   G   L+EG+ V++D   ND 
Sbjct: 1  MAQGTVKWFSDKKGFGFIEQD----EGNDVFVHHTAIDMPGFKTLSEGERVSFDIEDNDR 56

Query: 62 NGKYSAENL 70
              +A N+
Sbjct: 57 G--PAARNV 63


>gi|84624223|ref|YP_451595.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|84368163|dbj|BAE69321.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF
          311018]
          Length = 69

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ     
Sbjct: 6  NGIVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQKG- 60

Query: 64 KYSAENLKLV 73
             A+ ++ V
Sbjct: 61 -MQADQVQAV 69


>gi|224000015|ref|XP_002289680.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
           pseudonana CCMP1335]
 gi|220974888|gb|EED93217.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
           pseudonana CCMP1335]
          Length = 136

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++KW++  KG+GF+ P+   +   +VF+H SA+ + G  +L +G++V ++ +Q + NG
Sbjct: 43  KGTVKWFDAKKGFGFLVPD---DGSAEVFVHHSAIHANGFRSLGDGEVVEFEVMQ-EPNG 98

Query: 64  KYSAENLK 71
           K+ A N+ 
Sbjct: 99  KWKALNVT 106


>gi|149185382|ref|ZP_01863698.1| cold shock protein [Erythrobacter sp. SD-21]
 gi|148830602|gb|EDL49037.1| cold shock protein [Erythrobacter sp. SD-21]
          Length = 263

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++K++N  KG+GFI  E     G+D+F+H SAV  AGL  L EGQ + ++ V  D  G
Sbjct: 110 KGTVKFFNSQKGFGFIQQET---GGEDIFVHISAVERAGLEGLAEGQELEFNLV--DRGG 164

Query: 64  KYSAENLKLV 73
           K SA++L++V
Sbjct: 165 KVSAQDLQVV 174



 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++K++N  KG+GF+T +   +   D F+H SAV  +GL  + EG+   +D  + D  G
Sbjct: 197 TGTVKFFNSMKGFGFLTRD---DGQPDAFVHISAVERSGLSQINEGERYEFDL-EVDRRG 252

Query: 64  KYSAENL 70
           KYSA NL
Sbjct: 253 KYSAVNL 259


>gi|260774268|ref|ZP_05883183.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
 gi|260611229|gb|EEX36433.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14]
          Length = 70

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF+TP+     G DVF+H +++AS G   L EGQ V+++  Q     
Sbjct: 6  TGSVKWFNETKGFGFLTPD---NGGSDVFVHFNSIASEGFKTLAEGQKVSFNVEQGKKG- 61

Query: 64 KYSAENLKLV 73
             AE + ++
Sbjct: 62 -PQAEQVTVL 70


>gi|229592309|ref|YP_002874428.1| cold shock protein cspc [Pseudomonas fluorescens SBW25]
 gi|229364175|emb|CAY51835.1| cold shock protein cspc [Pseudomonas fluorescens SBW25]
          Length = 73

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 6  TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 60

Query: 64 KYSAENLKLVPK 75
            + + +  +P+
Sbjct: 61 LQAEDVIAALPR 72


>gi|58581133|ref|YP_200149.1| major cold shock protein [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84623058|ref|YP_450430.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|58425727|gb|AAW74764.1| major cold shock protein [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84366998|dbj|BAE68156.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF
          311018]
          Length = 71

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N  KG+GFI+ E    +G+DVF+H  A+   G  +L EGQ V++  VQ   
Sbjct: 6  RENGLVKWFNDAKGFGFISRE----NGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQK 61

Query: 62 NGKYSAENLKLV 73
               A+ +++V
Sbjct: 62 G--LQADAVQVV 71


>gi|109900034|ref|YP_663289.1| cold-shock DNA-binding domain-containing protein
          [Pseudoalteromonas atlantica T6c]
 gi|109702315|gb|ABG42235.1| cold-shock DNA-binding protein family [Pseudoalteromonas
          atlantica T6c]
          Length = 68

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKG+GFITPE   + G D+F+H S +    G   L +GQ V ++  Q+ 
Sbjct: 1  MSQGTVKWFNADKGFGFITPE---DGGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQSP 57

Query: 61 ANGKYSAENLKLV 73
                A N+  V
Sbjct: 58 KG--PCANNVVPV 68


>gi|251787872|ref|YP_003002593.1| cold-shock DNA-binding domain-containing protein [Dickeya zeae
          Ech1591]
 gi|271502353|ref|YP_003335379.1| cold-shock DNA-binding domain-containing protein [Dickeya
          dadantii Ech586]
 gi|247536493|gb|ACT05114.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591]
 gi|270345908|gb|ACZ78673.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586]
          Length = 70

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +  + N   G
Sbjct: 6  TGSVKWFNESKGFGFISP---ADGSKDVFVHFSAIQSDSFKTLYEGQKVEF-VIGNGPKG 61

Query: 64 KYSAENL 70
            SAEN+
Sbjct: 62 P-SAENV 67


>gi|237738393|ref|ZP_04568874.1| cold-shock DNA-binding domain-containing protein [Fusobacterium
          mortiferum ATCC 9817]
 gi|229420273|gb|EEO35320.1| cold-shock DNA-binding domain-containing protein [Fusobacterium
          mortiferum ATCC 9817]
          Length = 66

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI+     E G+D F+H S + + G  +L EGQ V+++  +   
Sbjct: 1  MLKGTVKWFNKDKGFGFIS----GEDGNDYFVHYSNINAKGFRSLEEGQAVSFEVTEGAK 56

Query: 62 NGKYSAENLKL 72
               A N+ +
Sbjct: 57 G--PVASNVTV 65


>gi|320108152|ref|YP_004183742.1| cold-shock DNA-binding domain-containing protein [Terriglobus
          saanensis SP1PR4]
 gi|319926673|gb|ADV83748.1| cold-shock DNA-binding domain protein [Terriglobus saanensis
          SP1PR4]
          Length = 71

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 6/74 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          ++GS+KW+N  KG+GF+      E+G DVF+H S++   G  +L EG  V +D +Q +  
Sbjct: 4  YKGSVKWFNNAKGFGFL----GRENGPDVFVHYSSIQLDGYKSLKEGDEVEFDVIQGEKG 59

Query: 63 GKYSAENLKLVPKS 76
              A+ +  + ++
Sbjct: 60 --PQADQVTRIKEA 71


>gi|94500606|ref|ZP_01307136.1| Cold shock protein [Oceanobacter sp. RED65]
 gi|94427161|gb|EAT12141.1| Cold shock protein [Oceanobacter sp. RED65]
          Length = 171

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             RG +KW+N  KG+GFIT +    +G+DVF+H  ++   G  +L+EGQ V +  V    
Sbjct: 105 RERGLVKWFNVKKGFGFITRD----NGEDVFVHFRSIRGTGHRSLSEGQNVKFSVVDGQK 160

Query: 62  NGKYSAENLKLVP 74
                AE++ +V 
Sbjct: 161 G--LQAEDVSVVK 171


>gi|114321683|ref|YP_743366.1| cold-shock DNA-binding protein family protein [Alkalilimnicola
          ehrlichii MLHE-1]
 gi|114228077|gb|ABI57876.1| cold-shock DNA-binding protein family [Alkalilimnicola ehrlichii
          MLHE-1]
          Length = 69

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW++  KG+GFI  E     G+DVF+H  A+   G  +L EGQ V ++ V+   
Sbjct: 4  RETGTVKWFDNAKGFGFIQREQ----GEDVFVHFRAIRGEGFRSLDEGQQVEFNVVRGPK 59

Query: 62 NGKYSAENLKLV 73
               AE++  V
Sbjct: 60 G--LQAEDVAAV 69


>gi|239809492|gb|ACS26216.1| unknown [uncultured bacterium]
          Length = 69

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFI  E    +G DVF+H SA+  AG   L EGQ V +   Q     
Sbjct: 6  TGTVKFFNEAKGFGFIQRE----NGPDVFVHFSAIQGAGFKTLAEGQKVQFTVGQGQKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -PQAENV 66


>gi|306834445|ref|ZP_07467559.1| cold shock protein CspA [Streptococcus bovis ATCC 700338]
 gi|304423431|gb|EFM26583.1| cold shock protein CspA [Streptococcus bovis ATCC 700338]
          Length = 67

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI+ E    +G DVF H S + S G  +L +GQ V +D  Q   
Sbjct: 1  MVQGTVKWFNTDKGFGFISQE----NGADVFAHFSEIKSNGFKSLEDGQKVQFDVEQG-K 55

Query: 62 NGKYSAENLKL 72
           G  +   +K+
Sbjct: 56 RGLQAVNIIKI 66


>gi|254481420|ref|ZP_05094665.1| putative 'Cold-shock' DNA-binding domain protein [marine gamma
          proteobacterium HTCC2148]
 gi|214038583|gb|EEB79245.1| putative 'Cold-shock' DNA-binding domain protein [marine gamma
          proteobacterium HTCC2148]
          Length = 70

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFIT E   E   DVF+H  ++   G   L EGQ V +  ++      
Sbjct: 7  GTVKWFNNAKGFGFITRE---EEDADVFVHFRSIEGDGYRTLNEGQEVEFSLIEGPKG-- 61

Query: 65 YSAENLKLV 73
            AE++  V
Sbjct: 62 LQAEDVHKV 70


>gi|78186132|ref|YP_374175.1| cold-shock DNA-binding domain-containing protein [Chlorobium
          luteolum DSM 273]
 gi|78166034|gb|ABB23132.1| cold-shock DNA-binding protein family [Chlorobium luteolum DSM
          273]
          Length = 69

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KGYGFI        G DVF+H SA+  +G   L EGQ V+ +  Q +   
Sbjct: 6  EGTVKWFNEEKGYGFIQQ----GEGKDVFVHYSAINGSGRKTLVEGQKVSMEVTQGEKG- 60

Query: 64 KYSAENLKLV 73
             A N+  +
Sbjct: 61 -LQAANVTPL 69


>gi|93006301|ref|YP_580738.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          cryohalolentis K5]
 gi|92393979|gb|ABE75254.1| cold-shock DNA-binding protein family [Psychrobacter
          cryohalolentis K5]
          Length = 71

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G +KW+N  KG+GFI  +    SG+D+F+H  A+   G  +L +G+ V +  V+ D 
Sbjct: 4  REQGIVKWFNDSKGFGFIQRD----SGEDIFVHFRAIQGDGYRSLKDGEKVEFSVVEGDK 59

Query: 62 NGKYSAENLKLVPK 75
               AE ++ V +
Sbjct: 60 G--LQAEEVRKVEE 71


>gi|84385112|ref|ZP_00988144.1| cold shock DNA-binding domain protein [Vibrio splendidus 12B01]
 gi|86144296|ref|ZP_01062628.1| cold shock DNA-binding domain protein [Vibrio sp. MED222]
 gi|218676272|ref|YP_002395091.1| cold shock DNA-binding domain protein [Vibrio splendidus LGP32]
 gi|84379709|gb|EAP96560.1| cold shock DNA-binding domain protein [Vibrio splendidus 12B01]
 gi|85837195|gb|EAQ55307.1| cold shock DNA-binding domain protein [Vibrio sp. MED222]
 gi|218324540|emb|CAV26032.1| cold shock DNA-binding domain protein [Vibrio splendidus LGP32]
          Length = 69

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI  E    +G DVF H SA+   G   L EGQ V +   Q     
Sbjct: 6  TGKVKWFNETKGFGFIEQE----NGPDVFAHFSAITGDGFKTLAEGQQVEFTVSQGQKG- 60

Query: 64 KYSAENLKLV 73
             A+++K++
Sbjct: 61 -PQADSIKVL 69


>gi|297801940|ref|XP_002868854.1| hypothetical protein ARALYDRAFT_912317 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297314690|gb|EFH45113.1| hypothetical protein ARALYDRAFT_912317 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 195

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +GS+KW++  KG+GFITP+   + GDD+F+H+S++ S G  +L   + V ++ V+ D 
Sbjct: 10 RRKGSVKWFDTQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLAADEAVEFE-VEMDN 65

Query: 62 NGKYSAENLK 71
          N +  A ++ 
Sbjct: 66 NSRPKAIDVS 75


>gi|206890727|ref|YP_002249771.1| hypothetical protein THEYE_A1982 [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206742665|gb|ACI21722.1| conserved domain protein [Thermodesulfovibrio yellowstonii DSM
          11347]
          Length = 67

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW+N  KG+GFI  +     G DVF+H +++   G   L +G  V +D V+ D
Sbjct: 1  MAFEGRVKWFNESKGFGFIQQD----GGQDVFVHYTSIKGDGFKTLKQGDRVKFDVVEGD 56

Query: 61 ANGKYSAENLKLV 73
             K  A N++ V
Sbjct: 57 RGPK--AVNVEKV 67


>gi|87200599|ref|YP_497856.1| cold-shock DNA-binding protein family protein [Novosphingobium
          aromaticivorans DSM 12444]
 gi|87136280|gb|ABD27022.1| cold-shock DNA-binding protein family [Novosphingobium
          aromaticivorans DSM 12444]
          Length = 68

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKGYGFI P+G      D F+H SAV  +G+  L + Q V Y+  + D 
Sbjct: 1  MPVGTVKFFNVDKGYGFIAPDG---GAPDNFVHISAVERSGMATLDKDQRVQYEL-ETDK 56

Query: 62 NGKYSAENLK 71
           GK SA NL+
Sbjct: 57 RGKTSAVNLQ 66


>gi|120611988|ref|YP_971666.1| cold-shock DNA-binding protein family protein [Acidovorax
          citrulli AAC00-1]
 gi|120590452|gb|ABM33892.1| cold-shock DNA-binding protein family [Acidovorax citrulli
          AAC00-1]
          Length = 70

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFI P+   + G D+F H   +   G   L E Q V ++  Q    
Sbjct: 4  QTGIVKWFNEGKGFGFIAPD---DGGKDLFAHFREIQGGGFKTLAENQHVQFEVTQGAKG 60

Query: 63 GKYSAENLKLV 73
              A N+++V
Sbjct: 61 --PQASNIRVV 69


>gi|51597876|ref|YP_072067.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP
          32953]
 gi|51597877|ref|YP_072068.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP
          32953]
 gi|153949918|ref|YP_001399369.1| cold shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|170022694|ref|YP_001719199.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186897072|ref|YP_001874184.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|186897073|ref|YP_001874185.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|51591158|emb|CAH22823.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP
          32953]
 gi|51591159|emb|CAH22824.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP
          32953]
 gi|152961413|gb|ABS48874.1| cold shock DNA-binding domain protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|169749228|gb|ACA66746.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186700098|gb|ACC90727.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|186700099|gb|ACC90728.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
          Length = 70

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAVNVIAL 70


>gi|15644431|ref|NP_229483.1| cold shock protein [Thermotoga maritima MSB8]
 gi|6225214|sp|O54310|CSP_THEMA RecName: Full=Cold shock-like protein
 gi|16974798|pdb|1G6P|A Chain A, Solution Nmr Structure Of The Cold Shock Protein From
          The Hyperthermophilic Bacterium Thermotoga Maritima
 gi|4982259|gb|AAD36750.1|AE001809_2 cold shock protein [Thermotoga maritima MSB8]
 gi|2894098|emb|CAA72105.1| cold shock protein [Thermotoga maritima MSB8]
          Length = 66

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++  KGYGFIT +     G DVF+H SA+   G   L EGQ+V ++  Q    G
Sbjct: 2  RGKVKWFDSKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFEI-QEGKKG 56

Query: 64 KYSAENLKLVP 74
            +A  +K+V 
Sbjct: 57 PQAAH-VKVVE 66


>gi|120555467|ref|YP_959818.1| cold-shock DNA-binding domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120325316|gb|ABM19631.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei VT8]
          Length = 179

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
             G++KW+N  KG+GFI  +    SGD++F+H  A+   G   L +GQLV ++ V+ D  
Sbjct: 113 EEGTVKWFNVKKGFGFIVRD----SGDEIFVHFRAIRGRGRRVLRQGQLVRFNVVEADKG 168

Query: 63  GKYSAENLKLVPK 75
               A+N+ ++  
Sbjct: 169 --LQADNVSILSD 179


>gi|149911179|ref|ZP_01899804.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
 gi|149805780|gb|EDM65777.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
          Length = 68

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  E    +G DVF H SA+AS G   L EGQ V +   +     
Sbjct: 5  QGTVKWFNEAKGFGFIEQE----NGPDVFAHFSAIASEGFKTLVEGQKVEFTVGEGQKG- 59

Query: 64 KYSAENLKLV 73
            +AEN+  +
Sbjct: 60 -PNAENIVAI 68


>gi|153955498|ref|YP_001396263.1| hypothetical protein CKL_2880 [Clostridium kluyveri DSM 555]
 gi|219855901|ref|YP_002473023.1| hypothetical protein CKR_2558 [Clostridium kluyveri NBRC 12016]
 gi|146348356|gb|EDK34892.1| Hypothetical protein CKL_2880 [Clostridium kluyveri DSM 555]
 gi|219569625|dbj|BAH07609.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 65

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT     E G DVF H S + S G   L EGQ V++D  +     
Sbjct: 2  TGTVKWFNGNKGFGFIT----GEDGKDVFAHFSQINSEGYKTLEEGQKVSFD--EGRGQK 55

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 56 GTQAENITVL 65


>gi|49082396|gb|AAT50598.1| PA3266 [synthetic construct]
          Length = 70

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFITPE    SG+D+F+H  ++   G  +L EGQ V++  V    
Sbjct: 4  RQNGTVKWFNDAKGFGFITPE----SGNDLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ +++V
Sbjct: 60 G--LQADEVQVV 69


>gi|299065287|emb|CBJ36455.1| cold shock/stress protein, member of the Csp-family [Ralstonia
          solanacearum CMR15]
          Length = 67

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H S +  +G   L EGQ V Y       
Sbjct: 1  METGTVKWFNESKGFGFITPDA---GGNDLFAHFSEIQGSGFKTLQEGQKVRY-VAGVGQ 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPAA 61


>gi|302786020|ref|XP_002974781.1| hypothetical protein SELMODRAFT_58801 [Selaginella
          moellendorffii]
 gi|300157676|gb|EFJ24301.1| hypothetical protein SELMODRAFT_58801 [Selaginella
          moellendorffii]
          Length = 145

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 44/67 (65%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P +G+GFITP+   +   D+F+H++++ + G  +L EG++V Y  V+   +G+
Sbjct: 1  GKVKWFSPTRGFGFITPD---DGSPDIFVHQTSIHAEGFRSLREGEIVEY-VVELGQDGR 56

Query: 65 YSAENLK 71
            A N+ 
Sbjct: 57 MRAGNVT 63


>gi|170726448|ref|YP_001760474.1| cold-shock DNA-binding domain-containing protein [Shewanella
          woodyi ATCC 51908]
 gi|169811795|gb|ACA86379.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
          51908]
          Length = 68

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKGYGFITPE   + G D+F+H S +    G   L +GQ V +D  +  
Sbjct: 1  MSKGTVKWFNADKGYGFITPE---DGGKDLFVHHSEIRSGGGYATLNDGQSVEFDVGEGQ 57

Query: 61 ANGKYSAENL 70
                A N+
Sbjct: 58 KG--PCATNV 65


>gi|149374597|ref|ZP_01892371.1| cold-shock DNA-binding domain family protein [Marinobacter
          algicola DG893]
 gi|149361300|gb|EDM49750.1| cold-shock DNA-binding domain family protein [Marinobacter
          algicola DG893]
          Length = 68

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT E    SG DVF+H SA+   G   L EGQ V +         
Sbjct: 5  TGTVKFFNEAKGFGFITRE----SGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTDGQKG- 59

Query: 64 KYSAENLKLV 73
             AEN+  V
Sbjct: 60 -PQAENVVAV 68


>gi|116781927|gb|ABK22299.1| unknown [Picea sitchensis]
 gi|148909032|gb|ABR17619.1| unknown [Picea sitchensis]
 gi|224285091|gb|ACN40273.1| unknown [Picea sitchensis]
          Length = 205

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KGYGFITP+   +  +D+F+H++++ S G  +L EG+ V Y  V+++  G+
Sbjct: 8  GKVKWFDSTKGYGFITPD---DGSEDLFVHQTSIHSNGFRSLAEGEAVEY-TVEHENGGR 63

Query: 65 YSAENLK 71
            A ++ 
Sbjct: 64 TKALDVT 70


>gi|76577745|gb|ABA54143.1| putative glycine-rich protein [Picea glauca]
          Length = 156

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KGYGFITP+   +  +D+F+H++++ S G  +L EG+ V Y  V+++  G+
Sbjct: 8  GKVKWFDSTKGYGFITPD---DGSEDLFVHQTSIHSNGFRSLAEGEAVEY-TVEHENGGR 63

Query: 65 YSAENLK 71
            A ++ 
Sbjct: 64 TKALDVT 70


>gi|15226451|ref|NP_179702.1| ATGRP2B (GLYCINE-RICH PROTEIN 2B); DNA binding / nucleic acid
          binding / zinc ion binding [Arabidopsis thaliana]
 gi|17366505|sp|Q38896|GRP2B_ARATH RecName: Full=Glycine-rich protein 2b; Short=AtGRP2b
 gi|1063684|gb|AAA91165.1| AtGRP2b [Arabidopsis thaliana]
 gi|4803937|gb|AAD29810.1| glycine-rich protein (AtGRP2) [Arabidopsis thaliana]
 gi|16323178|gb|AAL15323.1| At2g21060/F26H11.18 [Arabidopsis thaliana]
 gi|60543359|gb|AAX22277.1| At2g21060 [Arabidopsis thaliana]
 gi|330252023|gb|AEC07117.1| glycine-rich protein 2B [Arabidopsis thaliana]
          Length = 201

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G++KW++  KG+GFITP   ++ GDD+F+H+S++ S G  +L   + V +D V+ D 
Sbjct: 14 RRKGTVKWFDTQKGFGFITP---SDGGDDLFVHQSSIRSEGFRSLAAEESVEFD-VEVDN 69

Query: 62 NGKYSAENLK 71
          +G+  A  + 
Sbjct: 70 SGRPKAIEVS 79


>gi|21230878|ref|NP_636795.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|21242217|ref|NP_641799.1| major cold shock protein [Xanthomonas axonopodis pv. citri str.
          306]
 gi|66769123|ref|YP_243885.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|78047078|ref|YP_363253.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
 gi|188992271|ref|YP_001904281.1| cold shock protein [Xanthomonas campestris pv. campestris str.
          B100]
 gi|289662980|ref|ZP_06484561.1| major cold shock protein [Xanthomonas campestris pv. vasculorum
          NCPPB702]
 gi|289670169|ref|ZP_06491244.1| major cold shock protein [Xanthomonas campestris pv. musacearum
          NCPPB4381]
 gi|325914001|ref|ZP_08176357.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325922910|ref|ZP_08184625.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
          19865]
 gi|325928751|ref|ZP_08189921.1| cold-shock DNA-binding protein family [Xanthomonas perforans
          91-118]
 gi|21107638|gb|AAM36335.1| major cold shock protein [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21112487|gb|AAM40719.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66574455|gb|AAY49865.1| major cold shock protein [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|78035508|emb|CAJ23154.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
 gi|167734031|emb|CAP52237.1| cold shock protein [Xanthomonas campestris pv. campestris]
 gi|325539770|gb|EGD11410.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325540919|gb|EGD12491.1| cold-shock DNA-binding protein family [Xanthomonas perforans
          91-118]
 gi|325546600|gb|EGD17739.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC
          19865]
          Length = 71

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N  KG+GFI+ E    +G+DVF+H  A+   G  +L EGQ V++  VQ   
Sbjct: 6  RENGVVKWFNDAKGFGFISRE----NGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQK 61

Query: 62 NGKYSAENLKLV 73
               A+ +++V
Sbjct: 62 G--LQADAVQVV 71


>gi|26990715|ref|NP_746140.1| cold-shock protein CspD [Pseudomonas putida KT2440]
 gi|24985709|gb|AAN69604.1|AE016594_1 cold-shock protein CspD [Pseudomonas putida KT2440]
          Length = 88

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  EG ++   D+F H SA+   G   L  GQ V ++ VQ   
Sbjct: 1  MASGKVKWFNNAKGYGFINEEGKSD---DLFAHYSAIQMDGYKTLKAGQAVVFNIVQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|213423037|ref|ZP_03356055.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
          Length = 55

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L EGQ V ++    
Sbjct: 3  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNG 55


>gi|126347669|emb|CAJ89383.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877]
          Length = 67

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A +G   LTEG+ VT++  Q   
Sbjct: 1  MASGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSEIAGSGYRELTEGEHVTFEIGQGQK 57

Query: 62 NGKYSAENL 70
               A+N+
Sbjct: 58 G--PQAQNI 64


>gi|297196882|ref|ZP_06914279.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
 gi|197711514|gb|EDY55548.1| cold shock domain-containing protein CspD [Streptomyces sviceus
          ATCC 29083]
          Length = 67

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI  +G    G DVF H S +A+ G   LTEG+ VT+D  Q   
Sbjct: 1  MASGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSEIAANGYRELTEGEHVTFDIGQGQK 57

Query: 62 NGKYSAENL 70
               A+N+
Sbjct: 58 G--PQAQNI 64


>gi|222056386|ref|YP_002538748.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
 gi|221565675|gb|ACM21647.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32]
          Length = 66

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  E    +G+DVF H SA++  G  +L EG  V ++  +   
Sbjct: 1  MVNGTVKWFNDSKGFGFLEQE----NGEDVFCHFSAISGEGFKSLAEGDRVQFEVTKG-P 55

Query: 62 NGKYSAENLKL 72
           G  +A   ++
Sbjct: 56 KGLQAANVTRI 66


>gi|171778705|ref|ZP_02919801.1| hypothetical protein STRINF_00653 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171282662|gb|EDT48086.1| hypothetical protein STRINF_00653 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 67

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N DKG+GFI+ E    +G DVF H S + S G  +L +GQ V +D  Q + 
Sbjct: 1  MVQGTVKWFNTDKGFGFISQE----NGADVFAHFSQIKSNGFKSLEDGQKVQFDVEQGER 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--LQAVNI 63


>gi|170022693|ref|YP_001719198.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|169749227|gb|ACA66745.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
          Length = 70

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +   +N A G
Sbjct: 6  TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PAAVNVIAL 70


>gi|270261474|ref|ZP_06189747.1| hypothetical protein SOD_a07060 [Serratia odorifera 4Rx13]
 gi|270044958|gb|EFA18049.1| hypothetical protein SOD_a07060 [Serratia odorifera 4Rx13]
          Length = 70

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +   ++ A G
Sbjct: 6  TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQRVEFTI-ESGAKG 61

Query: 64 KYSAENLKLV 73
            SA N+ ++
Sbjct: 62 P-SAGNVVVL 70


>gi|332308080|ref|YP_004435931.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|332175409|gb|AEE24663.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 68

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKG+GFITPE   + G D+F+H S +    G   L +GQ V ++  Q+ 
Sbjct: 1  MSKGTVKWFNADKGFGFITPE---DGGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQSP 57

Query: 61 ANGKYSAENLKLV 73
                A N+  V
Sbjct: 58 KG--PCANNVVPV 68


>gi|22125131|ref|NP_668554.1| cold shock protein [Yersinia pestis KIM 10]
 gi|45442244|ref|NP_993783.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
 gi|21957990|gb|AAM84805.1|AE013726_8 homolog of Salmonella cold shock protein [Yersinia pestis KIM 10]
 gi|45437108|gb|AAS62660.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
          Length = 80

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q     
Sbjct: 16 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKG- 71

Query: 64 KYSAENL 70
            SA N+
Sbjct: 72 -PSAVNV 77


>gi|51597265|ref|YP_071456.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
 gi|108808380|ref|YP_652296.1| cold shock protein [Yersinia pestis Antiqua]
 gi|108811305|ref|YP_647072.1| cold shock protein [Yersinia pestis Nepal516]
 gi|123441290|ref|YP_001005277.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|145598899|ref|YP_001162975.1| cold shock protein [Yersinia pestis Pestoides F]
 gi|149365449|ref|ZP_01887484.1| cold shock protein [Yersinia pestis CA88-4125]
 gi|153949592|ref|YP_001400051.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
 gi|162420073|ref|YP_001607873.1| cold shock protein [Yersinia pestis Angola]
 gi|165925316|ref|ZP_02221148.1| cold shock protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165939935|ref|ZP_02228473.1| cold shock protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008469|ref|ZP_02229367.1| cold shock protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212413|ref|ZP_02238448.1| cold shock protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167398538|ref|ZP_02304062.1| cold shock protein [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167421189|ref|ZP_02312942.1| cold shock protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167423656|ref|ZP_02315409.1| cold shock protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|170023370|ref|YP_001719875.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186896369|ref|YP_001873481.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|218929733|ref|YP_002347608.1| cold shock protein [Yersinia pestis CO92]
 gi|229838213|ref|ZP_04458372.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895592|ref|ZP_04510763.1| cold shock protein [Yersinia pestis Pestoides A]
 gi|229898778|ref|ZP_04513923.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
          195]
 gi|229901551|ref|ZP_04516673.1| cold shock protein [Yersinia pestis Nepal516]
 gi|270489738|ref|ZP_06206812.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|332162760|ref|YP_004299337.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|61221540|sp|P0A362|CSPB_YERPE RecName: Full=Cold shock-like protein CspB
 gi|61221541|sp|P0A363|CSPB_YEREN RecName: Full=Cold shock-like protein CspB
 gi|3249024|gb|AAC24037.1| cold shock protein CspB [Yersinia enterocolitica]
 gi|51590547|emb|CAH22188.1| cold shock protein [Yersinia pseudotuberculosis IP 32953]
 gi|108774953|gb|ABG17472.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108780293|gb|ABG14351.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
 gi|115348344|emb|CAL21278.1| cold shock protein [Yersinia pestis CO92]
 gi|122088251|emb|CAL11041.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|145210595|gb|ABP40002.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|149291862|gb|EDM41936.1| cold shock protein [Yersinia pestis CA88-4125]
 gi|152961087|gb|ABS48548.1| cold shock protein [Yersinia pseudotuberculosis IP 31758]
 gi|162352888|gb|ABX86836.1| cold shock protein [Yersinia pestis Angola]
 gi|165912154|gb|EDR30793.1| cold shock protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922923|gb|EDR40074.1| cold shock protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165992851|gb|EDR45152.1| cold shock protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206344|gb|EDR50824.1| cold shock protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166960678|gb|EDR56699.1| cold shock protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167051042|gb|EDR62450.1| cold shock protein [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167057826|gb|EDR67572.1| cold shock protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|169749904|gb|ACA67422.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186699395|gb|ACC90024.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229681480|gb|EEO77574.1| cold shock protein [Yersinia pestis Nepal516]
 gi|229688326|gb|EEO80397.1| cold shock protein [Yersinia pestis biovar Orientalis str. India
          195]
 gi|229694579|gb|EEO84626.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701398|gb|EEO89426.1| cold shock protein [Yersinia pestis Pestoides A]
 gi|270338242|gb|EFA49019.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|318606863|emb|CBY28361.1| cold shock protein CspG [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|320016134|gb|ADV99705.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin
          35]
 gi|325666990|gb|ADZ43634.1| cold shock-like protein cspG [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330859919|emb|CBX70249.1| cold shock-like protein cspB [Yersinia enterocolitica W22703]
          Length = 70

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q     
Sbjct: 6  TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKG- 61

Query: 64 KYSAENL 70
            SA N+
Sbjct: 62 -PSAVNV 67


>gi|2970685|gb|AAC06037.1| cold shock protein C [Salmonella enterica subsp. enterica serovar
          Typhimurium]
          Length = 69

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G  KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G
Sbjct: 5  KGQGKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 61 P-AAVNVTAI 69


>gi|158522029|ref|YP_001529899.1| cold-shock DNA-binding domain-containing protein [Desulfococcus
          oleovorans Hxd3]
 gi|158510855|gb|ABW67822.1| cold-shock DNA-binding domain protein [Desulfococcus oleovorans
          Hxd3]
          Length = 66

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  + S    +DVF+H SA+   G   L+EG  V+++    D 
Sbjct: 1  MADGIVKWFNEKKGFGFIEVDES----NDVFVHYSAITMPGFKTLSEGDRVSFEIEDTDR 56

Query: 62 NGKYSAENL 70
              +A+N+
Sbjct: 57 G--PAAKNV 63


>gi|50955729|ref|YP_063017.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952211|gb|AAT89912.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 73

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDANGK 64
          ++KW+N  KG+GFI P+   +   DVF+H S +A+  G  NL E Q V YD  Q    G 
Sbjct: 10 TVKWFNSKKGFGFIAPD---DGSTDVFVHYSEIAATGGYRNLDENQKVEYDLAQG-PKGP 65

Query: 65 YSAE 68
           +A 
Sbjct: 66 QAAN 69


>gi|297613721|gb|ADI48290.1| cold-shock protein [Lactococcus piscium]
          Length = 54

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          + +G++KW+N +KG+GFIT       G DVF+H SA+ + G   L EGQ V YD    
Sbjct: 1  MAQGTVKWFNAEKGFGFIT----GADGKDVFVHFSAIQTDGFKTLEEGQAVNYDVEDG 54


>gi|114797581|ref|YP_759686.1| cold shock protein [Hyphomonas neptunium ATCC 15444]
 gi|114737755|gb|ABI75880.1| cold shock protein [Hyphomonas neptunium ATCC 15444]
          Length = 69

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KG+GFI+P   T  G+DVF+H S +  +G+ +L EGQ V++D   +  
Sbjct: 1  MTNGIVKFFNSQKGFGFISP---TNGGNDVFVHISTLERSGIAHLNEGQKVSFDTAIDKR 57

Query: 62 NGKYSAENLKL 72
          +GK +   ++L
Sbjct: 58 SGKSAVSAIEL 68


>gi|82702264|ref|YP_411830.1| cold-shock DNA-binding domain-containing protein [Nitrosospira
          multiformis ATCC 25196]
 gi|82410329|gb|ABB74438.1| cold-shock DNA-binding protein family [Nitrosospira multiformis
          ATCC 25196]
          Length = 71

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 9/74 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57
          +  G++KW+N  KG+GFITP+   E  +D+F H SA+     + G   L EGQ VT++  
Sbjct: 1  MATGTVKWFNGTKGFGFITPD---EGNEDLFAHFSAINIFGNTGGFKTLQEGQKVTFEIT 57

Query: 58 QNDANGKYSAENLK 71
           N   GK  A N++
Sbjct: 58 -NGPKGKQ-ASNIQ 69


>gi|73539008|ref|YP_299375.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|116695865|ref|YP_841441.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|300694434|ref|YP_003750407.1| cold shock/stress protein, member of the csp-family [Ralstonia
          solanacearum PSI07]
 gi|72122345|gb|AAZ64531.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
 gi|113530364|emb|CAJ96711.1| cold shock protein, DNA-binding [Ralstonia eutropha H16]
 gi|299076471|emb|CBJ35788.1| cold shock/stress protein, member of the Csp-family [Ralstonia
          solanacearum PSI07]
          Length = 67

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H S +   G  +L EGQ V Y       
Sbjct: 1  METGTVKWFNDSKGFGFITPDA---GGNDLFAHFSEIQGNGFKSLQEGQKVRY-VAGVGQ 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPAA 61


>gi|56459145|ref|YP_154426.1| cold shock protein [Idiomarina loihiensis L2TR]
 gi|56178155|gb|AAV80877.1| Cold shock protein [Idiomarina loihiensis L2TR]
          Length = 68

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K++N  KG+GFI  E    +G DVF+H SA+ S G   L EGQ V++   Q     
Sbjct: 5  TGKVKFFNEAKGFGFIEQE----NGADVFVHFSAIQSDGFKTLAEGQQVSFTVAQGPKG- 59

Query: 64 KYSAENL 70
             AEN+
Sbjct: 60 -PQAENV 65


>gi|77919964|ref|YP_357779.1| cold shock proteins [Pelobacter carbinolicus DSM 2380]
 gi|77546047|gb|ABA89609.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus
          DSM 2380]
          Length = 66

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI      + G DVF+H S + + G  +LT+GQ V +D +++  
Sbjct: 1  MAEGVVKWFNDAKGFGFIEQ----QDGPDVFVHFSVIQAEGFKSLTQGQQVEFDIIESQ- 55

Query: 62 NGKYSAENLKL 72
           G  +   +KL
Sbjct: 56 KGPQANNVIKL 66


>gi|15896242|ref|NP_349591.1| cold shock protein [Clostridium acetobutylicum ATCC 824]
 gi|15026046|gb|AAK80931.1|AE007796_1 Cold shock protein [Clostridium acetobutylicum ATCC 824]
 gi|325510397|gb|ADZ22033.1| Cold shock protein [Clostridium acetobutylicum EA 2018]
          Length = 65

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KGYGFIT    T+ G+DVF+H S +   G   L EGQ V +D  +      
Sbjct: 3  GTVKWFNSQKGYGFIT----TQEGNDVFVHYSGIKDNGFKTLEEGQEVEFDLTEGQKG-- 56

Query: 65 YSAENL 70
            A N+
Sbjct: 57 EQAVNV 62


>gi|206579907|ref|YP_002240730.1| 'cold-shock' DNA-binding domain protein [Klebsiella pneumoniae
          342]
 gi|206568965|gb|ACI10741.1| 'cold-shock' DNA-binding domain protein [Klebsiella pneumoniae
          342]
          Length = 72

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFI+P    +   D+F+H SA+       L EGQ V +   + D   
Sbjct: 6  MGLVKWFNEDKGFGFISP---LDGSKDIFVHLSALNGDNFKTLFEGQKVEFAIHRGDKG- 61

Query: 64 KYSAENLKL 72
            +A N+ L
Sbjct: 62 -PAAANVTL 69


>gi|78188197|ref|YP_378535.1| cold-shock DNA-binding domain-containing protein [Chlorobium
          chlorochromatii CaD3]
 gi|78170396|gb|ABB27492.1| cold-shock DNA-binding protein family [Chlorobium chlorochromatii
          CaD3]
          Length = 69

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KGYGFI      + G DVF+H SA+  +G   L EGQ VT + VQ +   
Sbjct: 5  EGTVKWFNEEKGYGFIEQ----QGGKDVFVHYSAINGSGRKTLVEGQKVTMEVVQGEKG- 59

Query: 64 KYSAENLKLV 73
             A ++  +
Sbjct: 60 -LQASDVTPL 68


>gi|85374781|ref|YP_458843.1| cold shock protein [Erythrobacter litoralis HTCC2594]
 gi|84787864|gb|ABC64046.1| Cold shock protein [Erythrobacter litoralis HTCC2594]
          Length = 70

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKGYGFI P+   +   D F+H SAV +AG+  L + Q + YD  Q  
Sbjct: 1  MAKTGTVKFFNEDKGYGFIQPD---DGSADSFVHISAVQAAGMQTLDKEQRLNYDVEQG- 56

Query: 61 ANGKYSAENLK 71
           NGK SA NL 
Sbjct: 57 RNGKESAVNLS 67


>gi|145219125|ref|YP_001129834.1| cold-shock DNA-binding protein family protein [Prosthecochloris
          vibrioformis DSM 265]
 gi|145205289|gb|ABP36332.1| cold-shock DNA-binding protein family [Chlorobium phaeovibrioides
          DSM 265]
          Length = 69

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KGYGFI        G DVF+H SA+  +G   L EGQ VT +  Q D   
Sbjct: 6  EGTVKWFNEEKGYGFIQQ----SEGKDVFVHYSAINGSGRKTLVEGQKVTMEVSQGDKG- 60

Query: 64 KYSAENLKLV 73
             A N+  +
Sbjct: 61 -LQAGNVTPL 69


>gi|330994825|ref|ZP_08318747.1| Cold shock-like protein CspE [Gluconacetobacter sp. SXCC-1]
 gi|329758086|gb|EGG74608.1| Cold shock-like protein CspE [Gluconacetobacter sp. SXCC-1]
          Length = 229

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG++KWYN  KG+GFITPE     G D+F+H SA+  +GL  LTEGQ      V+     
Sbjct: 165 RGTVKWYNAAKGFGFITPE---NGGKDIFVHASALERSGLSGLTEGQTANVQVVEGQKGP 221

Query: 64  KYSA 67
           + +A
Sbjct: 222 EAAA 225



 Score = 66.9 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N +KG+GF+     ++   DVFLH +A+   G   +  G  +     Q    G+ 
Sbjct: 60  TVKWFNSEKGFGFVE---LSDGSGDVFLHANALNPTGHATVAPGTTLVVQIGQG-PKGRQ 115

Query: 66  SAENLKLVPKSSN 78
            A  L +   ++ 
Sbjct: 116 VAAVLSVDESTAQ 128


>gi|157370303|ref|YP_001478292.1| cold-shock DNA-binding domain-containing protein [Serratia
          proteamaculans 568]
 gi|157322067|gb|ABV41164.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
          Length = 70

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +   +N   G
Sbjct: 6  TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQRVEFTI-ENGQKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAGNVVVL 70


>gi|88857116|ref|ZP_01131759.1| Cold shock protein [Pseudoalteromonas tunicata D2]
 gi|88820313|gb|EAR30125.1| Cold shock protein [Pseudoalteromonas tunicata D2]
          Length = 69

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI       SG DVF H SA++  G   L EGQ V +   Q     
Sbjct: 6  TGSVKWFNEAKGFGFIEQ----ASGPDVFAHFSAISGDGFKTLAEGQRVQFSVSQGQKG- 60

Query: 64 KYSAENL 70
             A+N+
Sbjct: 61 -PQADNI 66


>gi|87119420|ref|ZP_01075317.1| Cold shock protein [Marinomonas sp. MED121]
 gi|86164896|gb|EAQ66164.1| Cold shock protein [Marinomonas sp. MED121]
          Length = 69

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT +     G DVF+H SA+ S+G   L EGQ V +    +   G
Sbjct: 6  TGTVKFFNETKGFGFITQDK----GPDVFVHFSAINSSGFKTLAEGQKVEFQVA-DGKKG 60

Query: 64 KYSAENLKLV 73
             A+N+  +
Sbjct: 61 PE-AQNVTPL 69


>gi|238784838|ref|ZP_04628839.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
 gi|238714254|gb|EEQ06265.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970]
          Length = 70

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q     
Sbjct: 6  TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQGQKG- 61

Query: 64 KYSAENL 70
            SA N+
Sbjct: 62 -PSAVNV 67


>gi|313901283|ref|ZP_07834770.1| cold shock protein CspB [Clostridium sp. HGF2]
 gi|312953891|gb|EFR35572.1| cold shock protein CspB [Clostridium sp. HGF2]
          Length = 65

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI    + E G D+F+H S +   G  +L EGQ VT+D V +D   
Sbjct: 2  KGKVKWFNAEKGYGFI----NGEDGKDIFVHYSHIQQEGYKSLEEGQEVTFDTVDSDKG- 56

Query: 64 KYSAENLK 71
             A N++
Sbjct: 57 -LQARNVE 63


>gi|325578326|ref|ZP_08148461.1| cold shock domain protein CspD [Haemophilus parainfluenzae ATCC
          33392]
 gi|301156234|emb|CBW15705.1| cold shock protein homolog [Haemophilus parainfluenzae T3T1]
 gi|325160062|gb|EGC72191.1| cold shock domain protein CspD [Haemophilus parainfluenzae ATCC
          33392]
          Length = 69

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI+ EG      D+F H SA+   G  +L  GQ V ++ +  D 
Sbjct: 1  MEIGVVKWFNNAKGFGFISAEGVD---TDIFAHYSAIEMDGYRSLKAGQRVQFEVIHGDK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|238755702|ref|ZP_04617036.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
 gi|238706069|gb|EEP98452.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473]
          Length = 66

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+ S+    L EGQ V +   Q     
Sbjct: 2  TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSSDFKTLDEGQNVEFSIEQGQKG- 57

Query: 64 KYSAENL 70
            SA N+
Sbjct: 58 -PSAVNV 63


>gi|302391875|ref|YP_003827695.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM
           5501]
 gi|302203952|gb|ADL12630.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 110

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +KW++  KGYGFI  E     GDD+F+H +A+   G  +L E Q V+++ V++D   
Sbjct: 47  TGKVKWFDTKKGYGFIEQE----DGDDIFVHYTAIQEEGFKDLEEEQQVSFEVVESDKG- 101

Query: 64  KYSAENLKLV 73
              AEN+  V
Sbjct: 102 -LQAENVTKV 110


>gi|255324199|ref|ZP_05365321.1| conserved hypothetical protein [Corynebacterium
          tuberculostearicum SK141]
 gi|311741029|ref|ZP_07714854.1| cold shock protein CspA [Corynebacterium pseudogenitalium ATCC
          33035]
 gi|255298715|gb|EET78010.1| conserved hypothetical protein [Corynebacterium
          tuberculostearicum SK141]
 gi|311303831|gb|EFQ79909.1| cold shock protein CspA [Corynebacterium pseudogenitalium ATCC
          33035]
          Length = 67

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KGYGFI      +   D+F+H S +  +G   L E Q VT++      
Sbjct: 1  MAQGTVKWFNSEKGYGFIER---ADGEGDIFVHYSEIQGSGFRTLEENQQVTFEVGSGPK 57

Query: 62 NGKYSAENLKLV 73
               A+++ ++
Sbjct: 58 G--EQAQSVSVI 67


>gi|88857117|ref|ZP_01131760.1| Cold shock protein [Pseudoalteromonas tunicata D2]
 gi|88820314|gb|EAR30126.1| Cold shock protein [Pseudoalteromonas tunicata D2]
          Length = 69

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI       SG DVF H SA++  G   L EGQ V +   Q     
Sbjct: 6  TGSVKWFNEAKGFGFIEQ----ASGPDVFAHFSAISGDGFKTLAEGQRVQFTVSQGQKG- 60

Query: 64 KYSAENL 70
             A+N+
Sbjct: 61 -PQADNI 66


>gi|329894352|ref|ZP_08270222.1| putative cold-shock DNA-binding domain protein [gamma
          proteobacterium IMCC3088]
 gi|328923148|gb|EGG30471.1| putative cold-shock DNA-binding domain protein [gamma
          proteobacterium IMCC3088]
          Length = 70

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KGYGFI  E  ++   DVF+H  ++   G   L EGQ V +          
Sbjct: 7  GKVKWFNNAKGYGFIERENESD---DVFVHFRSIQGEGFRTLNEGQAVEFTLTTGPKG-- 61

Query: 65 YSAENL 70
            AE++
Sbjct: 62 LQAEDV 67


>gi|260913997|ref|ZP_05920471.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
 gi|260632084|gb|EEX50261.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
          Length = 69

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFITP    + G D+F+H S +       L EG  V Y  VQ+   G
Sbjct: 5  NGTVKWFNSDKGFGFITP---ADGGKDLFVHFSGIIGTSYRTLNEGDRVQYS-VQDSQRG 60

Query: 64 KYSAENLKLV 73
            SA +++++
Sbjct: 61 P-SAIDVQVI 69


>gi|330890523|gb|EGH23184.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          mori str. 301020]
          Length = 70

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW++ +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ   
Sbjct: 4  RQSGTVKWFSDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59

Query: 62 NGKYSAENLK 71
               A+ ++
Sbjct: 60 G--MQADEVQ 67


>gi|149376382|ref|ZP_01894145.1| Cold shock protein [Marinobacter algicola DG893]
 gi|149359396|gb|EDM47857.1| Cold shock protein [Marinobacter algicola DG893]
          Length = 131

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++ RG +KW+N  KGYGFI  EG ++   D+F H S+V   G   L  GQ VT+D   +D
Sbjct: 24 IMPRGKVKWFNNAKGYGFIIEEGCSD---DLFAHFSSVQMEGYKTLKAGQAVTFDKKPSD 80

Query: 61 ANGKYSAENLKLVPKSS 77
                   + +VP+  
Sbjct: 81 KG----IHAVNIVPEEQ 93


>gi|104783210|ref|YP_609708.1| cold shock protein CspE-like [Pseudomonas entomophila L48]
 gi|95112197|emb|CAK16924.1| putative cold shock protein CspE-like [Pseudomonas entomophila
          L48]
          Length = 69

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFI  E     G DVF+H  A+   G   L EGQ V Y  VQ   
Sbjct: 4  RETGNVKWFNDAKGYGFIQRE----GGADVFVHYRAIRGEGHRTLVEGQQVEYALVQGQK 59

Query: 62 NGKYSAENL 70
               AE++
Sbjct: 60 G--LQAEDV 66


>gi|293393437|ref|ZP_06637748.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
 gi|291424038|gb|EFE97256.1| CspA family cold shock transcriptional regulator [Serratia
          odorifera DSM 4582]
          Length = 75

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +   +N   G
Sbjct: 11 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFTI-ENGQKG 66

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 67 PSAGNVVVL 75


>gi|83944783|ref|ZP_00957149.1| putative cold shock-like transcription regulator protein
          [Oceanicaulis alexandrii HTCC2633]
 gi|83851565|gb|EAP89420.1| putative cold shock-like transcription regulator protein
          [Oceanicaulis alexandrii HTCC2633]
          Length = 70

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N +KG+GFITP+   E   DVF+H +AV  AGL +L +GQ + ++   +  
Sbjct: 1  MTTGTVKFFNTEKGFGFITPD---EGDKDVFVHITAVKDAGLNDLRDGQRIEFETEPDRR 57

Query: 62 NGKYSAENLK 71
               A NLK
Sbjct: 58 GKGPKAVNLK 67


>gi|331005484|ref|ZP_08328862.1| cold-shock DNA-binding domain protein [gamma proteobacterium
          IMCC1989]
 gi|330420676|gb|EGG94964.1| cold-shock DNA-binding domain protein [gamma proteobacterium
          IMCC1989]
          Length = 68

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKG+GFITPE   + G D+F+H S +    G   L +GQ V ++  Q  
Sbjct: 1  MSKGTVKWFNADKGFGFITPE---DGGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQGQ 57

Query: 61 ANGKYSAENL 70
                A N+
Sbjct: 58 KG--PCANNV 65


>gi|149185796|ref|ZP_01864111.1| Cold shock protein [Erythrobacter sp. SD-21]
 gi|148830357|gb|EDL48793.1| Cold shock protein [Erythrobacter sp. SD-21]
          Length = 69

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKGYGFI P+   +   D F+H SAV +AG+  L + Q + Y+ V+   
Sbjct: 1  MTTGTVKFFNGDKGYGFIQPD---DGSADSFVHISAVQAAGMTTLDKDQRLNYE-VETGR 56

Query: 62 NGKYSAENLK 71
          NGK SA NL 
Sbjct: 57 NGKASAVNLS 66


>gi|149185568|ref|ZP_01863884.1| Cold shock protein [Erythrobacter sp. SD-21]
 gi|148830788|gb|EDL49223.1| Cold shock protein [Erythrobacter sp. SD-21]
          Length = 70

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKGYGFI P+   +   D F+H SAV +AG+  L + Q + Y+  Q  
Sbjct: 1  MAKTGTVKFFNSDKGYGFIQPD---DGSADSFVHISAVQAAGMQTLDKEQRLNYEVEQG- 56

Query: 61 ANGKYSAENLK 71
           NGK SA N+ 
Sbjct: 57 RNGKESAVNIS 67


>gi|85710988|ref|ZP_01042049.1| Cold shock protein [Idiomarina baltica OS145]
 gi|85695392|gb|EAQ33329.1| Cold shock protein [Idiomarina baltica OS145]
          Length = 68

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K++N  KG+GFI  E    +G DVF+H SA+ + G   L EGQ V++   Q     
Sbjct: 5  TGKVKFFNEAKGFGFIEQE----NGADVFVHFSAIQADGFKTLAEGQQVSFTVAQGPKG- 59

Query: 64 KYSAENL 70
             AEN+
Sbjct: 60 -PQAENV 65


>gi|293609525|ref|ZP_06691827.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827977|gb|EFF86340.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122795|gb|ADY82318.1| cold shock-like protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 69

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +    +G DVF H   +A +G   L EGQ VT+   Q    G+
Sbjct: 7  GTVKWFNETKGFGFIQQD----NGPDVFAHFKEIAGSGFKTLHEGQRVTFTVTQ----GQ 58

Query: 65 YSAENLKLVPK 75
               + ++P+
Sbjct: 59 KGPNAVNIIPQ 69


>gi|169796701|ref|YP_001714494.1| cold shock-like protein [Acinetobacter baumannii AYE]
 gi|215484188|ref|YP_002326415.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
 gi|169149628|emb|CAM87518.1| cold shock-like protein [Acinetobacter baumannii AYE]
 gi|213987146|gb|ACJ57445.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
          Length = 69

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 8/71 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +    SG DVF H   +A++G   L EGQ VT++  Q    G+
Sbjct: 7  GTVKWFNETKGFGFIQQD----SGPDVFAHFKEIATSGFKTLYEGQRVTFNITQ----GQ 58

Query: 65 YSAENLKLVPK 75
               + ++P+
Sbjct: 59 KGPNAVNIIPQ 69


>gi|28871129|ref|NP_793748.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|66044651|ref|YP_234492.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|71734613|ref|YP_275919.1| cold shock domain-contain protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|302064187|ref|ZP_07255728.1| cold-shock domain-contain protein [Pseudomonas syringae pv.
          tomato K40]
 gi|28854379|gb|AAO57443.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|63255358|gb|AAY36454.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|71555166|gb|AAZ34377.1| cold shock domain family protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|320329669|gb|EFW85658.1| cold-shock domain-containing protein [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330892234|gb|EGH24895.1| cold-shock domain-containing protein [Pseudomonas syringae pv.
          mori str. 301020]
 gi|331009339|gb|EGH89395.1| cold-shock domain-containing protein [Pseudomonas syringae pv.
          tabaci ATCC 11528]
          Length = 73

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 6  TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 60

Query: 64 KYSAENLKLVPK 75
            + + +  +P+
Sbjct: 61 LQAEDVIAALPR 72


>gi|309777854|ref|ZP_07672800.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914415|gb|EFP60209.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 65

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KGYGFI    + E G D+F+H S +   G  +L EGQ VT+D V +D   
Sbjct: 2  KGKVKWFNAEKGYGFI----NGEDGKDIFVHYSHIQQEGYKSLEEGQEVTFDAVDSDKG- 56

Query: 64 KYSAENLK 71
             A N++
Sbjct: 57 -LQARNVE 63


>gi|304391865|ref|ZP_07373807.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
 gi|303296094|gb|EFL90452.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
          Length = 69

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K+YN  KG+GFI P+   + G DVF+H +A+   GL  L+EGQ V+++   +  
Sbjct: 1  MTSGTVKFYNDTKGFGFIQPD---DGGKDVFVHATALERNGLTGLSEGQKVSFETDMDPR 57

Query: 62 NGKYSAENLK 71
          +GK +   ++
Sbjct: 58 SGKPAVSKIE 67


>gi|26987835|ref|NP_743260.1| cold-shock domain-contain protein [Pseudomonas putida KT2440]
 gi|104780430|ref|YP_606928.1| cold shock protein CapB [Pseudomonas entomophila L48]
 gi|148546382|ref|YP_001266484.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          putida F1]
 gi|325275204|ref|ZP_08141171.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
 gi|24982535|gb|AAN66724.1|AE016300_9 cold-shock domain family protein [Pseudomonas putida KT2440]
 gi|95109417|emb|CAK14117.1| cold shock protein CapB [Pseudomonas entomophila L48]
 gi|148510440|gb|ABQ77300.1| cold-shock DNA-binding protein family [Pseudomonas putida F1]
 gi|313497465|gb|ADR58831.1| CapB [Pseudomonas putida BIRD-1]
 gi|324099691|gb|EGB97570.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp.
          TJI-51]
          Length = 69

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N +KGYGFITP    +SGDD+F+H  A+ + G   L EGQ VT+   +   
Sbjct: 4  RQSGVVKWFNDEKGYGFITP----QSGDDLFVHFKAIQADGFKTLKEGQAVTFVATRGQK 59

Query: 62 NGKYSAENLKL 72
               AE +++
Sbjct: 60 G--MQAEEVQI 68


>gi|302392640|ref|YP_003828460.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
 gi|302204717|gb|ADL13395.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
          Length = 66

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++ +KGYGFI         DDVF+H SA+   G  +L EG+ V ++ V+ D 
Sbjct: 1  METGTVKWFDSNKGYGFIERPEE----DDVFVHFSAIQEDGFKDLEEGEEVEFNIVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  + + +KL
Sbjct: 56 KGLQAEDVVKL 66


>gi|238759184|ref|ZP_04620352.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
 gi|238702600|gb|EEP95149.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236]
          Length = 66

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q     
Sbjct: 2  TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKG- 57

Query: 64 KYSAENL 70
            SA N+
Sbjct: 58 -PSAVNV 63


>gi|153216791|ref|ZP_01950615.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae 1587]
 gi|153800523|ref|ZP_01955109.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-3]
 gi|153828062|ref|ZP_01980729.1| putative cold-shock' DNA-binding domain [Vibrio cholerae 623-39]
 gi|229526634|ref|ZP_04416038.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
 gi|229528256|ref|ZP_04417647.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          12129(1)]
 gi|124114125|gb|EAY32945.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae 1587]
 gi|124123967|gb|EAY42710.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-3]
 gi|148876471|gb|EDL74606.1| putative cold-shock' DNA-binding domain [Vibrio cholerae 623-39]
 gi|229334618|gb|EEO00104.1| cold shock transcriptional regulator CspA [Vibrio cholerae
          12129(1)]
 gi|229336792|gb|EEO01810.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
          Length = 70

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF++ +     GDDVF+H +++ S G   L EGQ V+Y  V+    G
Sbjct: 6  TGSVKWFNETKGFGFLSQD---NGGDDVFVHFNSIVSTGFKTLAEGQKVSY-LVEKGKKG 61

Query: 64 KYSAENLKL 72
            +AE   L
Sbjct: 62 LQAAEVTVL 70


>gi|262377343|ref|ZP_06070567.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
 gi|262307796|gb|EEY88935.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
          Length = 69

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF H S +  +G   L EGQ V++   Q    G
Sbjct: 6  NGTVKWFNETKGFGFIQQE----SGPDVFAHFSEITGSGFKTLVEGQKVSFSVAQGQ-KG 60

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 61 PTAVNIVAL 69


>gi|125602073|gb|EAZ41398.1| hypothetical protein OsJ_25919 [Oryza sativa Japonica Group]
          Length = 91

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KG+GFITP+   + G+D+F+H+S++ S G  +L +G +V +    +  +G
Sbjct: 7  KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVG-SGNDG 62

Query: 64 KYSAEN 69
          +  A +
Sbjct: 63 RTKAVD 68


>gi|15890768|ref|NP_356440.1| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|15159048|gb|AAK89225.1| cold shock protein [Agrobacterium tumefaciens str. C58]
          Length = 76

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++  DKG+GFITP+     G DVF+H SAV   G  +L +GQ V+Y+  Q+  
Sbjct: 10 MATGTVKFFAQDKGFGFITPD---NGGPDVFVHISAVGFGG--SLQDGQKVSYELGQDRK 64

Query: 62 NGKYSAENLKLV 73
           GK  AEN+ L+
Sbjct: 65 TGKSKAENVTLL 76


>gi|315605470|ref|ZP_07880508.1| cold shock protein [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312816|gb|EFU60895.1| cold shock protein [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 69

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N  KG+GFITP+  +    DVF+H S +   +G   L EG+ V Y+ ++  
Sbjct: 1  MTTGTVKWFNDAKGFGFITPDDRSV---DVFVHYSNIVGQSGRRTLMEGERVEYEAIEG- 56

Query: 61 ANGKYSAEN 69
            G  + + 
Sbjct: 57 PKGPQATDV 65


>gi|330807764|ref|YP_004352226.1| transcription factor, Csd family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327375872|gb|AEA67222.1| putative Transcription factor, Csd family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 69

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             GS+KW+N  KGYGFI  E     G DVF+H  A+   G  +LTEGQ V Y  V+   
Sbjct: 4  RETGSVKWFNDAKGYGFIQRE----GGADVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQK 59

Query: 62 NGKYSAENL 70
               AE++
Sbjct: 60 G--LQAEDV 66


>gi|296272840|ref|YP_003655471.1| cold-shock DNA-binding domain-containing protein [Arcobacter
          nitrofigilis DSM 7299]
 gi|296097014|gb|ADG92964.1| cold-shock DNA-binding domain protein [Arcobacter nitrofigilis
          DSM 7299]
          Length = 72

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61
           G++KW+N +KG+GFI  E     G DVF+H   + S G    +L EGQ VT++  +   
Sbjct: 6  NGTVKWFNSEKGFGFIEQE---NGGKDVFVHYRQINSTGYGRVSLNEGQKVTFEVAEGQK 62

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 63 G--PQAENVTAL 72


>gi|148244980|ref|YP_001219674.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA]
 gi|146326807|dbj|BAF61950.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA]
          Length = 67

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW++  KG+GFI  E    SG DVF+H  A+   G  +L EGQ V +D    +
Sbjct: 1  MSTTGKVKWFDAKKGFGFIEQE----SGGDVFVHFRAIQGDGYKSLEEGQEVEFDLEDGE 56

Query: 61 ANGKYSAENL 70
                A N+
Sbjct: 57 KG--PQAVNV 64


>gi|77361880|ref|YP_341455.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Pseudoalteromonas haloplanktis
          TAC125]
 gi|77362296|ref|YP_341870.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125]
 gi|315122994|ref|YP_004065000.1| cold shock protein [Pseudoalteromonas sp. SM9913]
 gi|76876791|emb|CAI88013.1| RNA chaperone, transcription antiterminator, affects expression
          of rpoS and uspA [Pseudoalteromonas haloplanktis
          TAC125]
 gi|76877207|emb|CAI89424.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125]
 gi|315016754|gb|ADT70091.1| cold shock protein [Pseudoalteromonas sp. SM9913]
          Length = 69

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFI  E    SG DVF H SA++  G   L EGQ V +   Q     
Sbjct: 6  TGTVKFFNEAKGFGFIEQE----SGADVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -PQAENI 66


>gi|311694048|gb|ADP96921.1| cold-shock DNA-binding domain protein [marine bacterium HP15]
          Length = 199

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
             G++KW+N  KG+GFI  +    SGD+VF+H  A+   G   L +GQLV ++ V+ D  
Sbjct: 133 EEGTVKWFNVKKGFGFIVRD----SGDEVFVHFRAIRGRGRRVLRQGQLVRFNVVEADKG 188

Query: 63  GKYSAENLKLVPK 75
               A+N+ ++  
Sbjct: 189 --LQADNVSILSD 199


>gi|189426058|ref|YP_001953235.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
 gi|189422317|gb|ACD96715.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ]
          Length = 66

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GF+  E    +G+DVF H SA+   G  +L EG  VT++  +   
Sbjct: 1  MVNGTVKWFNDSKGFGFLEQE----NGEDVFCHFSAITGEGFKSLAEGDRVTFEVTKGPK 56

Query: 62 NGKYSAENLKLV 73
               A N+  +
Sbjct: 57 G--LQASNVTRI 66


>gi|296394808|ref|YP_003659692.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rotundus DSM 44985]
 gi|296181955|gb|ADG98861.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
          44985]
          Length = 68

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KG+GFI P+   + G D+F+H S + S G    L E Q V ++   +D
Sbjct: 1  MPQGTVKWFNEEKGFGFIAPD---DGGKDLFVHFSGIVSEGGFRTLQENQRVKFETQASD 57

Query: 61 ANGKYSAENLKLV 73
                A ++ ++
Sbjct: 58 RG--PQAVSVTVI 68


>gi|269961818|ref|ZP_06176175.1| cold shock domain family protein [Vibrio harveyi 1DA3]
 gi|269833396|gb|EEZ87498.1| cold shock domain family protein [Vibrio harveyi 1DA3]
          Length = 70

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF+T +     G DVF+H +A+ + G   L EGQ V+++ V++   G
Sbjct: 6  TGSVKWFNETKGFGFLTQD---NGGQDVFVHFNAIVADGFKTLAEGQKVSFN-VEDGKKG 61

Query: 64 KYSAENLKL 72
            + E   L
Sbjct: 62 PQATEVTPL 70


>gi|257468871|ref|ZP_05632965.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063120|ref|ZP_07927605.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688796|gb|EFS25631.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
          Length = 65

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFIT     E G D+F H S +   G   L E + VTYD ++     
Sbjct: 2  KGTVKWFNQEKGFGFIT----GEDGKDIFAHFSQIQKDGFKTLNENEEVTYDVIEGQKG- 56

Query: 64 KYSAENLKL 72
             A N+K+
Sbjct: 57 -PQAANIKV 64


>gi|148379362|ref|YP_001253903.1| major cold shock protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931072|ref|YP_001383738.1| major cold shock protein [Clostridium botulinum A str. ATCC
          19397]
 gi|153936819|ref|YP_001387287.1| major cold shock protein [Clostridium botulinum A str. Hall]
 gi|153940797|ref|YP_001390748.1| major cold shock protein [Clostridium botulinum F str. Langeland]
 gi|168180058|ref|ZP_02614722.1| major cold shock protein [Clostridium botulinum NCTC 2916]
 gi|170756947|ref|YP_001781039.1| major cold shock protein [Clostridium botulinum B1 str. Okra]
 gi|170760431|ref|YP_001786775.1| major cold shock protein [Clostridium botulinum A3 str. Loch
          Maree]
 gi|226948665|ref|YP_002803756.1| major cold shock protein [Clostridium botulinum A2 str. Kyoto]
 gi|148288846|emb|CAL82930.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
 gi|152927116|gb|ABS32616.1| major cold shock protein CspA [Clostridium botulinum A str. ATCC
          19397]
 gi|152932733|gb|ABS38232.1| major cold shock protein CspA [Clostridium botulinum A str. Hall]
 gi|152936693|gb|ABS42191.1| major cold shock protein [Clostridium botulinum F str. Langeland]
 gi|169122159|gb|ACA45995.1| major cold shock protein CspA [Clostridium botulinum B1 str.
          Okra]
 gi|169407420|gb|ACA55831.1| major cold shock protein CspA [Clostridium botulinum A3 str. Loch
          Maree]
 gi|182669023|gb|EDT80999.1| major cold shock protein [Clostridium botulinum NCTC 2916]
 gi|226843516|gb|ACO86182.1| major cold shock protein [Clostridium botulinum A2 str. Kyoto]
 gi|295318821|gb|ADF99198.1| major cold shock protein [Clostridium botulinum F str. 230613]
          Length = 67

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          +  G++KW+N +KG+GFI  EG      DVF+H SA+       NL EGQ V ++ V+  
Sbjct: 1  MKTGTVKWFNSEKGFGFIEVEGE----KDVFVHFSAIQGDEPRKNLEEGQKVQFE-VEEG 55

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 56 QKGPQAANVIKL 67


>gi|85375609|ref|YP_459671.1| cold shock protein [Erythrobacter litoralis HTCC2594]
 gi|84788692|gb|ABC64874.1| cold shock protein [Erythrobacter litoralis HTCC2594]
          Length = 253

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++K++N  KG+GFI  EG    G+DVF+H SAV  AGL  L EGQ + ++ V  D  G
Sbjct: 98  KGTVKFFNGQKGFGFIQQEG---GGEDVFVHISAVERAGLDGLAEGQELEFNLV--DRGG 152

Query: 64  KYSAENLKLV 73
           K SA++L++V
Sbjct: 153 KVSAQDLQVV 162



 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++K++N  KG+GF+  +   +   D F+H SAV  +GL  + EG+   +D  + D  G
Sbjct: 186 TGTVKFFNSMKGFGFLVRD---DGQPDAFVHISAVERSGLSGIDEGERYEFDL-EVDRRG 241

Query: 64  KYSAENLKLVPK 75
           KYSA NL  V +
Sbjct: 242 KYSAVNLVPVQE 253


>gi|238750463|ref|ZP_04611964.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380]
 gi|238790115|ref|ZP_04633892.1| Cold shock-like protein cspI [Yersinia frederiksenii ATCC 33641]
 gi|238794420|ref|ZP_04638030.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
 gi|238711394|gb|EEQ03611.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380]
 gi|238721784|gb|EEQ13447.1| Cold shock-like protein cspI [Yersinia frederiksenii ATCC 33641]
 gi|238726215|gb|EEQ17759.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909]
          Length = 66

 Score = 91.6 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q     
Sbjct: 2  TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQGQKG- 57

Query: 64 KYSAENL 70
            SA N+
Sbjct: 58 -PSAVNV 63


>gi|220923754|ref|YP_002499056.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium nodulans ORS 2060]
 gi|219948361|gb|ACL58753.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
          ORS 2060]
          Length = 69

 Score = 91.6 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K+YN  KG+GFI PE   +   DVF+H +A+  AGL +L++GQ V++D  ++  
Sbjct: 1  MTIGIVKFYNDQKGFGFIQPE---DGSKDVFVHATALERAGLGSLSQGQKVSFDTAEDRR 57

Query: 62 NGKYSAENLK 71
          +GK +  N++
Sbjct: 58 SGKMAVNNIQ 67


>gi|126641275|ref|YP_001084259.1| cold shock protein [Acinetobacter baumannii ATCC 17978]
 gi|169796561|ref|YP_001714354.1| cold shock-like protein [Acinetobacter baumannii AYE]
 gi|184157530|ref|YP_001845869.1| cold shock protein [Acinetobacter baumannii ACICU]
 gi|213156325|ref|YP_002318745.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          AB0057]
 gi|215484022|ref|YP_002326247.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB307-0294]
 gi|239503700|ref|ZP_04663010.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB900]
 gi|260558025|ref|ZP_05830237.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
 gi|332854616|ref|ZP_08435438.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150]
 gi|332867722|ref|ZP_08437811.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113]
 gi|332875420|ref|ZP_08443246.1| cold shock-like protein CspE [Acinetobacter baumannii 6014059]
 gi|126387159|gb|ABO11657.1| Cold shock protein [Acinetobacter baumannii ATCC 17978]
 gi|169149488|emb|CAM87376.1| cold shock-like protein [Acinetobacter baumannii AYE]
 gi|183209124|gb|ACC56522.1| Cold shock protein [Acinetobacter baumannii ACICU]
 gi|213055485|gb|ACJ40387.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          AB0057]
 gi|213988970|gb|ACJ59269.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB307-0294]
 gi|260408535|gb|EEX01841.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
 gi|322507844|gb|ADX03298.1| Cold shock protein [Acinetobacter baumannii 1656-2]
 gi|323517444|gb|ADX91825.1| cold shock protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332727900|gb|EGJ59299.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150]
 gi|332733806|gb|EGJ64957.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113]
 gi|332736356|gb|EGJ67357.1| cold shock-like protein CspE [Acinetobacter baumannii 6014059]
          Length = 71

 Score = 91.6 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI     T+ G DVF H S + + G   L EGQ V +   Q     
Sbjct: 5  TGTVKWFNETKGFGFIQ----TDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQGKKG- 59

Query: 64 KYSAENLKLV 73
             A N+ +V
Sbjct: 60 -PQASNITIV 68


>gi|126667266|ref|ZP_01738239.1| Cold shock protein [Marinobacter sp. ELB17]
 gi|126628211|gb|EAZ98835.1| Cold shock protein [Marinobacter sp. ELB17]
          Length = 77

 Score = 91.6 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +  G +KW+N  KGYGFI  +G  +   D+F H SA+   G   L  GQ V+++
Sbjct: 1  MPSGKVKWFNNAKGYGFIIEDGYND---DLFAHFSAIQMDGYKTLKAGQAVSFE 51


>gi|261493105|ref|ZP_05989643.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2
          str. BOVINE]
 gi|261494856|ref|ZP_05991333.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2
          str. OVINE]
 gi|261309480|gb|EEY10706.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2
          str. OVINE]
 gi|261311240|gb|EEY12405.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2
          str. BOVINE]
          Length = 72

 Score = 91.6 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +       D+F H S + + G  +L  GQ V ++ VQ + 
Sbjct: 1  MDIGIVKWFNNVKGFGFITSDVCE---GDIFAHFSEIQAEGYRSLKVGQKVQFELVQGER 57

Query: 62 NGKYSAENLKLVPKSS 77
              SA N+  + + +
Sbjct: 58 G--ASASNITPISEKT 71


>gi|119469733|ref|ZP_01612602.1| Cold shock protein [Alteromonadales bacterium TW-7]
 gi|119446980|gb|EAW28251.1| Cold shock protein [Alteromonadales bacterium TW-7]
          Length = 69

 Score = 91.6 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFI  E    SG DVF H SA++  G   L EGQ V +   Q     
Sbjct: 6  TGTVKFFNEAKGFGFIEQE----SGPDVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -PQAENI 66


>gi|260550026|ref|ZP_05824241.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter
          sp. RUH2624]
 gi|260407018|gb|EEX00496.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter
          sp. RUH2624]
          Length = 71

 Score = 91.6 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI     T+ G DVF H S + + G   L EGQ V +   Q     
Sbjct: 5  TGTVKWFNETKGFGFIQ----TDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQGKKG- 59

Query: 64 KYSAENLKLV 73
             A N+ +V
Sbjct: 60 -PQASNITIV 68


>gi|118579190|ref|YP_900440.1| cold-shock DNA-binding domain-containing protein [Pelobacter
          propionicus DSM 2379]
 gi|118501900|gb|ABK98382.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM
          2379]
          Length = 67

 Score = 91.6 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +   +   DVF+H SA+  +G   L EG+ VTY+ V+   
Sbjct: 1  MATGTVKWFNESKGFGFIEQD---DGSGDVFVHFSAITGSGFKTLAEGEKVTYNVVKGPK 57

Query: 62 NGKYSAENLK 71
               AE ++
Sbjct: 58 G--LQAEEVQ 65


>gi|229588789|ref|YP_002870908.1| major cold shock protein [Pseudomonas fluorescens SBW25]
 gi|229360655|emb|CAY47513.1| major cold shock protein [Pseudomonas fluorescens SBW25]
          Length = 69

 Score = 91.6 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFI  E     G DVF+H  A+   G  +L EGQ V Y  V  + 
Sbjct: 4  RETGNVKWFNDAKGYGFIQRE----DGKDVFVHYRAIRGEGHRSLAEGQQVEYAVVTGEK 59

Query: 62 NGKYSAENL 70
               AE++
Sbjct: 60 G--LQAEDV 66


>gi|89092942|ref|ZP_01165894.1| cold shock domain protein CspD [Oceanospirillum sp. MED92]
 gi|89082967|gb|EAR62187.1| cold shock domain protein CspD [Oceanospirillum sp. MED92]
          Length = 70

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +   E  +D+F H SA+   G  +L  GQ V ++      
Sbjct: 1  MQTGKVKWFNNSKGYGFILSD---EHAEDLFAHYSAIDVDGYKSLKAGQAVEFET----K 53

Query: 62 NGKYSAENLKLVPKSSN 78
           G      +++ P  + 
Sbjct: 54 PGPKGTHAVQIKPLETQ 70


>gi|153833621|ref|ZP_01986288.1| putative cold-shock' DNA-binding domain [Vibrio harveyi HY01]
 gi|156977630|ref|YP_001448536.1| hypothetical protein VIBHAR_06418 [Vibrio harveyi ATCC BAA-1116]
 gi|148870019|gb|EDL68974.1| putative cold-shock' DNA-binding domain [Vibrio harveyi HY01]
 gi|156529224|gb|ABU74309.1| hypothetical protein VIBHAR_06418 [Vibrio harveyi ATCC BAA-1116]
          Length = 70

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF+T +     G DVF+H +A+ + G   LTEGQ V+++ V++   G
Sbjct: 6  TGSVKWFNETKGFGFLTQD---NGGQDVFVHFNAIVADGFKTLTEGQKVSFN-VEDGKKG 61

Query: 64 KYSAENLKL 72
            + E   L
Sbjct: 62 PQATEVTPL 70


>gi|89093876|ref|ZP_01166821.1| cold-shock domain family protein [Oceanospirillum sp. MED92]
 gi|89081762|gb|EAR60989.1| cold-shock domain family protein [Oceanospirillum sp. MED92]
          Length = 149

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             +G++KW+N  KG+GFIT        DDVF+H   +   G  +L EGQ V +   ++D 
Sbjct: 82  REQGTVKWFNVSKGFGFITRGED----DDVFVHFRNIRGRGHRSLAEGQKVRFYVRESDK 137

Query: 62  NGKYSAENLKLV 73
                AE++ +V
Sbjct: 138 G--LQAEDVSVV 147


>gi|94500755|ref|ZP_01307284.1| cold-shock DNA-binding domain family protein [Oceanobacter sp.
          RED65]
 gi|94427077|gb|EAT12058.1| cold-shock DNA-binding domain family protein [Oceanobacter sp.
          RED65]
          Length = 68

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H S +   G   L EGQ V +   Q     
Sbjct: 5  TGTVKWFNEAKGFGFIAQE----NGPDVFAHFSEIQGEGFKTLAEGQAVEFIVTQGQKGP 60

Query: 64 K 64
          +
Sbjct: 61 Q 61


>gi|325115241|emb|CBZ50796.1| lin-28 homolog B, related [Neospora caninum Liverpool]
          Length = 133

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V RG+ KW++  KGYGFIT     E G D+F+H+S + + G  NL EG+ V +  +Q   
Sbjct: 3  VSRGTCKWFDSKKGYGFIT----AEDGTDLFVHQSEIRAEGFRNLAEGEQVEF-VIQTGN 57

Query: 62 NGKYSAENLK 71
          +G+  A N+ 
Sbjct: 58 DGRKKAVNVT 67


>gi|293604627|ref|ZP_06687029.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
          43553]
 gi|292816958|gb|EFF76037.1| cold-shock domain family protein [Achromobacter piechaudii ATCC
          43553]
          Length = 69

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N DKGYGFI+PE     G D+F H S +   G  +L E Q V++   Q   
Sbjct: 3  IETGIVKWFNNDKGYGFISPEL---GGKDLFAHYSEIQGDGHKSLEENQRVSFVAGQGQK 59

Query: 62 NGK 64
            +
Sbjct: 60 GPQ 62


>gi|303246711|ref|ZP_07332989.1| cold-shock DNA-binding domain protein [Desulfovibrio
          fructosovorans JJ]
 gi|302492051|gb|EFL51929.1| cold-shock DNA-binding domain protein [Desulfovibrio
          fructosovorans JJ]
          Length = 68

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW++  KGYGFI  EG     DDVF+H S++   G   L EG+LV +D +Q +
Sbjct: 1  MGFEGTVKWFSDKKGYGFIMREGE----DDVFVHYSSIEGEGFRTLREGELVQFDIIQGE 56

Query: 61 ANGKYSAENLK 71
            G  +   +K
Sbjct: 57 -RGPKATNVVK 66


>gi|119477239|ref|ZP_01617475.1| cold-shock DNA-binding domain family protein [marine gamma
          proteobacterium HTCC2143]
 gi|119449602|gb|EAW30840.1| cold-shock DNA-binding domain family protein [marine gamma
          proteobacterium HTCC2143]
          Length = 68

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+NPDKG+GFITPE   + G D+F+H S +    G   L +GQ V ++  Q  
Sbjct: 1  MSKGTVKWFNPDKGFGFITPE---DGGKDLFVHHSEIQSGGGFATLNDGQDVEFEVGQGQ 57

Query: 61 ANG 63
             
Sbjct: 58 KGP 60


>gi|307136096|gb|ADN33944.1| cold-shock DNA-binding family protein [Cucumis melo subsp. melo]
          Length = 272

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G ++W+N  KG+GFI P+     G D+F+H+S++ S G  +L  G  V +     D   
Sbjct: 7  TGVVQWFNDSKGFGFIKPDVE---GPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63

Query: 64 KYSAENLKLVPKSSN 78
            + E + L   S N
Sbjct: 64 SKAIEVVALDGSSGN 78


>gi|307944227|ref|ZP_07659568.1| putative cold-shock DNA-binding domain protein [Roseibium sp.
           TrichSKD4]
 gi|307772573|gb|EFO31793.1| putative cold-shock DNA-binding domain protein [Roseibium sp.
           TrichSKD4]
          Length = 289

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G +K++  DKG+GFITP+   E   DVF+H SAV  +G+  L  GQ V+++   +  
Sbjct: 210 RQNGIVKFFKSDKGFGFITPD---EGDADVFVHISAVERSGMTTLDSGQRVSFETEPDRR 266

Query: 62  NGKYSAENLKLVPK 75
                A NL+ + +
Sbjct: 267 GKGPKAVNLQELSE 280


>gi|323141266|ref|ZP_08076162.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT
          12067]
 gi|322414223|gb|EFY05046.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT
          12067]
          Length = 66

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N +KGYGFI  E     G D+F+H S + S G   L EG  V +D +Q D   
Sbjct: 2  TGKVKWFNAEKGYGFIQRE----GGKDLFVHFSGIKSEGFKTLEEGWNVEFDVIQGDRG- 56

Query: 64 KYSAENL 70
             A N+
Sbjct: 57 -EQATNV 62


>gi|332856166|ref|ZP_08436156.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150]
 gi|332871668|ref|ZP_08440139.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113]
 gi|332727143|gb|EGJ58603.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150]
 gi|332731306|gb|EGJ62602.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113]
          Length = 83

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +     G DVF H   ++S+G   L EGQ V+++  Q      
Sbjct: 21 GTVKWFNETKGFGFIQQDT----GPDVFAHFKEISSSGFKTLYEGQRVSFNIAQGQKG-- 74

Query: 65 YSAENL 70
           +A N+
Sbjct: 75 PTATNI 80


>gi|193788570|ref|NP_001123330.1| zinc finger protein ZF(CCHC)-17 [Ciona intestinalis]
 gi|93003148|tpd|FAA00157.1| TPA: zinc finger protein [Ciona intestinalis]
          Length = 193

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+ KW+N  +GYGFITP+ S++   DVF+H+S++   G  +L EG  V + Y +    G 
Sbjct: 29 GNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSIDMEGFRSLQEGDRVKFWY-KPSKKGL 87

Query: 65 YSAENL 70
           + + +
Sbjct: 88 EAVKVV 93


>gi|77166067|ref|YP_344592.1| cold-shock protein, DNA-binding [Nitrosococcus oceani ATCC 19707]
 gi|76884381|gb|ABA59062.1| cold-shock DNA-binding protein family [Nitrosococcus oceani ATCC
          19707]
          Length = 69

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G++KW+N  KGYGFI  E     G D+F+H  ++  +G   L EGQ V++  VQ    
Sbjct: 5  QTGTVKWFNDSKGYGFIQRE----GGSDLFVHYRSITGSGHRTLKEGQQVSFIEVQGQKG 60

Query: 63 GKYSAENLKLV 73
              A+++ ++
Sbjct: 61 --PQADDVTIL 69


>gi|53804855|ref|YP_113293.1| cold shock protein [Methylococcus capsulatus str. Bath]
 gi|53758616|gb|AAU92907.1| cold shock protein [Methylococcus capsulatus str. Bath]
          Length = 69

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G++KW+N  KG+GFI  E    +G D+F+H  ++   G   L EGQ V++  V     
Sbjct: 5  QQGTVKWFNESKGFGFIQRE----NGSDLFVHFRSIQGQGFKTLKEGQRVSFTEVAGQKG 60

Query: 63 GKYSAENLKLV 73
              AEN+ ++
Sbjct: 61 --PQAENVVVL 69


>gi|71065101|ref|YP_263828.1| cold-shock DNA-binding protein family protein [Psychrobacter
          arcticus 273-4]
 gi|93005356|ref|YP_579793.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          cryohalolentis K5]
 gi|71038086|gb|AAZ18394.1| cold-shock DNA-binding protein family [Psychrobacter arcticus
          273-4]
 gi|92393034|gb|ABE74309.1| cold-shock DNA-binding protein family [Psychrobacter
          cryohalolentis K5]
 gi|118185010|gb|ABK76501.1| CspA-like protein [Psychrobacter sp. B6]
          Length = 70

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  +     G DVF H SA+   G   L EGQ V++  +  D   
Sbjct: 6  EGTVKWFNEAKGFGFIAQD---NGGQDVFAHYSAIQGGGFKTLAEGQKVSF--ILGDGKK 60

Query: 64 KYSAENLKLV 73
             AE ++ +
Sbjct: 61 GPQAEQIEAI 70


>gi|224105199|ref|XP_002313723.1| predicted protein [Populus trichocarpa]
 gi|222850131|gb|EEE87678.1| predicted protein [Populus trichocarpa]
          Length = 66

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFITP+   + GDD+F+H+S++ S G  +L +G+ V ++  +N  +G+
Sbjct: 1  GKVKWFSDQKGFGFITPD---DGGDDLFVHQSSIKSEGYRSLGDGEEVEFEI-ENSDDGR 56

Query: 65 YSAENLK 71
            A N+ 
Sbjct: 57 TKAANVT 63


>gi|238796661|ref|ZP_04640167.1| Cold shock-like protein cspB [Yersinia mollaretii ATCC 43969]
 gi|238719392|gb|EEQ11202.1| Cold shock-like protein cspB [Yersinia mollaretii ATCC 43969]
          Length = 66

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q     
Sbjct: 2  TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTEYKTLDEGQNVEFSIEQGQKG- 57

Query: 64 KYSAENL 70
            SA N+
Sbjct: 58 -PSAVNV 63


>gi|116748179|ref|YP_844866.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116697243|gb|ABK16431.1| cold-shock DNA-binding protein family [Syntrophobacter
          fumaroxidans MPOB]
          Length = 67

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI     T+   DVF+H SA+ + G  +L+EG+ V+++  +   
Sbjct: 1  MPEGRVKWFNDKKGYGFIE----TKDQGDVFVHHSAILAEGFRSLSEGEKVSFEVERGPK 56

Query: 62 NGKYSAENLKLVP 74
               A  +K +P
Sbjct: 57 G--PQAVRVKKIP 67


>gi|262278468|ref|ZP_06056253.1| predicted protein [Acinetobacter calcoaceticus RUH2202]
 gi|299769413|ref|YP_003731439.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
 gi|262258819|gb|EEY77552.1| predicted protein [Acinetobacter calcoaceticus RUH2202]
 gi|298699501|gb|ADI90066.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
          Length = 69

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +    +G DVF H   ++ +G   L EGQ VT+   Q    G+
Sbjct: 7  GTVKWFNETKGFGFIQQD----NGPDVFAHFKEISGSGFKTLHEGQRVTFTVTQ----GQ 58

Query: 65 YSAENLKLVPK 75
               + ++P+
Sbjct: 59 KGPNAVNIIPQ 69


>gi|330683909|gb|EGG95678.1| cold shock protein CspD [Staphylococcus epidermidis VCU121]
          Length = 58

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW+N DKG+GFI       +G+DVF+H S +A  G  +L EGQ V +D ++   
Sbjct: 1  MNNGTVKWFNADKGFGFIE----RGNGNDVFVHYSGIAGEGYKSLEEGQNVDFDIIEGQR 56

Query: 62 N 62
           
Sbjct: 57 G 57


>gi|262376304|ref|ZP_06069534.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
 gi|262308905|gb|EEY90038.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
          Length = 71

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G +KW+N  KG+GFI        GDDVF+H  A+   G  +L +GQ V +  V+   
Sbjct: 5  REQGVVKWFNDTKGFGFIQ----RNGGDDVFVHFRAIQGDGHRSLRDGQRVEFSVVKGQK 60

Query: 62 NGKYSAENLKLV 73
             + AE ++ +
Sbjct: 61 G--FQAEEVQPL 70


>gi|262376813|ref|ZP_06070040.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
 gi|262308158|gb|EEY89294.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
          Length = 71

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  E    SG DVF H S +AS+G   L EGQLV +   Q     
Sbjct: 8  KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEIASSGFKTLMEGQLVEFSVAQGQKG- 62

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 63 -PNAVNIVAI 71


>gi|91224056|ref|ZP_01259319.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
 gi|269966375|ref|ZP_06180460.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          40B]
 gi|91190967|gb|EAS77233.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          12G01]
 gi|269828962|gb|EEZ83211.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus
          40B]
          Length = 69

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF++ +     G DVF+H +A+ S G   LTEGQ V+++  Q    G
Sbjct: 5  TGSVKWFNETKGFGFLSQD---NGGQDVFVHFNAIVSDGFKTLTEGQKVSFNVEQG-KKG 60

Query: 64 KYSAENLKL 72
            + E   L
Sbjct: 61 PQATEVTPL 69


>gi|90962044|ref|YP_535960.1| cold shock protein [Lactobacillus salivarius UCC118]
 gi|227891063|ref|ZP_04008868.1| cold shock protein [Lactobacillus salivarius ATCC 11741]
 gi|301300924|ref|ZP_07207096.1| cold shock-like protein CspE [Lactobacillus salivarius
          ACS-116-V-Col5a]
 gi|90821238|gb|ABD99877.1| Cold shock protein [Lactobacillus salivarius UCC118]
 gi|227867152|gb|EEJ74573.1| cold shock protein [Lactobacillus salivarius ATCC 11741]
 gi|300851523|gb|EFK79235.1| cold shock-like protein CspE [Lactobacillus salivarius
          ACS-116-V-Col5a]
          Length = 69

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 5/74 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++  +N +KG+GFITP+ S +   DVF+H SA+ + G   L EGQ V +  ++   
Sbjct: 1  MILGTVHKFNREKGFGFITPDDSKD---DVFVHFSAIQTEGFKTLQEGQRVGFVTIEG-K 56

Query: 62 NGKYSAENLKLVPK 75
           G  +A N++L+  
Sbjct: 57 RGPQAA-NVELISD 69


>gi|153955581|ref|YP_001396346.1| hypothetical protein CKL_2966 [Clostridium kluyveri DSM 555]
 gi|219855966|ref|YP_002473088.1| hypothetical protein CKR_2623 [Clostridium kluyveri NBRC 12016]
 gi|146348439|gb|EDK34975.1| Hypothetical protein CKL_2966 [Clostridium kluyveri DSM 555]
 gi|219569690|dbj|BAH07674.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 65

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFIT     E G+D+F H S + S G   L EGQ V++D  +     
Sbjct: 2  TGTVKWFNGNKGFGFIT----GEDGNDIFAHFSQINSQGYKTLEEGQKVSFD--EGRGQK 55

Query: 64 KYSAENLKLV 73
             AEN+ ++
Sbjct: 56 GTQAENITVL 65


>gi|56459785|ref|YP_155066.1| cold shock protein [Idiomarina loihiensis L2TR]
 gi|56178795|gb|AAV81517.1| Cold shock protein [Idiomarina loihiensis L2TR]
          Length = 71

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  E       D+F H S +   G   L  GQ V ++  +   
Sbjct: 1  MATGKVKWFNNSKGFGFIESEDRE---GDIFAHYSTIEMEGYRTLKAGQPVEFELEEGPK 57

Query: 62 NGKYSAENLKLVPKSSN 78
               A N+  VP +++
Sbjct: 58 G--LHANNI--VPGAAD 70


>gi|28901144|ref|NP_800799.1| cold shock transcriptional regulator CspA [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|153838855|ref|ZP_01991522.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus
          AQ3810]
 gi|260362706|ref|ZP_05775575.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          K5030]
 gi|260879992|ref|ZP_05892347.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AN-5034]
 gi|260894667|ref|ZP_05903163.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          Peru-466]
 gi|260900524|ref|ZP_05908919.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AQ4037]
 gi|28809657|dbj|BAC62632.1| cold shock transcriptional regulator CspA [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|149747683|gb|EDM58593.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus
          AQ3810]
 gi|308086443|gb|EFO36138.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          Peru-466]
 gi|308091849|gb|EFO41544.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AN-5034]
 gi|308107098|gb|EFO44638.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AQ4037]
 gi|308112226|gb|EFO49766.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          K5030]
 gi|328471023|gb|EGF41934.1| cold shock transcriptional regulator CspA [Vibrio
          parahaemolyticus 10329]
          Length = 70

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF++ +     G DVF+H +A+ + G   LTEGQ V+++  Q    G
Sbjct: 6  TGSVKWFNETKGFGFLSQD---NGGQDVFVHFNAIVADGFKTLTEGQKVSFNVEQG-KKG 61

Query: 64 KYSAENLKL 72
            + E   L
Sbjct: 62 PQATEVTPL 70


>gi|294648554|ref|ZP_06726022.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194]
 gi|292825556|gb|EFF84291.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194]
          Length = 71

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  E    SG DVF H S +AS+G   L EGQ V +   Q     
Sbjct: 8  KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEIASSGFKTLMEGQQVEFSVAQGQKG- 62

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 63 -PNAVNIVAI 71


>gi|270007992|gb|EFA04440.1| hypothetical protein TcasGA2_TC014742 [Tribolium castaneum]
          Length = 192

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG  KW+N  KG+GFITP+   + G DVF+H+S +  +G  +L + + V ++   +D 
Sbjct: 36 LRRGKCKWFNVAKGWGFITPD---DGGQDVFVHQSVIQMSGFRSLGDDEEVEFECQVSDK 92

Query: 62 N 62
           
Sbjct: 93 G 93


>gi|149374445|ref|ZP_01892219.1| Cold shock protein [Marinobacter algicola DG893]
 gi|149361148|gb|EDM49598.1| Cold shock protein [Marinobacter algicola DG893]
          Length = 193

 Score = 90.8 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
             G++KW+N  KG+GFI  +    SGD+VF+H  A+   G   L +GQLV +  V+ D  
Sbjct: 127 EEGTVKWFNVKKGFGFIVRD----SGDEVFVHFRAIRGRGRRVLRQGQLVRFSVVEADKG 182

Query: 63  GKYSAENLKLVPK 75
               A+N+ ++  
Sbjct: 183 --LQADNVSILSD 193


>gi|326560305|gb|EGE10693.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          7169]
 gi|326562975|gb|EGE13254.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          46P47B1]
 gi|326563611|gb|EGE13863.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          103P14B1]
 gi|326565318|gb|EGE15498.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          12P80B1]
 gi|326566377|gb|EGE16527.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC1]
 gi|326570186|gb|EGE20231.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC8]
 gi|326570924|gb|EGE20948.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC7]
 gi|326573218|gb|EGE23186.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          101P30B1]
 gi|326575880|gb|EGE25803.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          CO72]
 gi|326576345|gb|EGE26254.1| cold-shock DNA-binding protein family [Moraxella catarrhalis
          O35E]
          Length = 68

 Score = 90.8 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G +KW+N  KG+GFI  E     G+DVF+H  A+   G  +L EGQ V +  V     
Sbjct: 4  EQGVVKWFNDAKGFGFIQRET----GEDVFVHFRAIQGEGYRSLKEGQAVEF-VVTTGDK 58

Query: 63 GKYSAENLKL 72
          G  + E  KL
Sbjct: 59 GLQAEEVTKL 68


>gi|226953337|ref|ZP_03823801.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|294651960|ref|ZP_06729249.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
 gi|226835963|gb|EEH68346.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|292822192|gb|EFF81106.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 69

 Score = 90.8 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      +SG DVF H S +A++G   L EGQ V++   Q    G
Sbjct: 6  TGTVKWFNETKGFGFIQQ----QSGPDVFAHFSEIANSGFKTLYEGQQVSFSVAQ----G 57

Query: 64 KYSAENLKLVP 74
          +     + +VP
Sbjct: 58 QKGPNAVNIVP 68


>gi|307825191|ref|ZP_07655411.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307733647|gb|EFO04504.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 70

 Score = 90.8 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          + G++KW+N  KG+GFI  E     G DVF+H S ++S G  +LT+GQ V ++  Q    
Sbjct: 6  NTGTVKWFNASKGFGFIEQEK----GPDVFVHYSNISSTGFKSLTDGQKVKFNVSQGKKG 61

Query: 63 GKYSAENLKLV 73
              AE+L ++
Sbjct: 62 --PQAEDLIVI 70


>gi|304320970|ref|YP_003854613.1| Cold shock protein [Parvularcula bermudensis HTCC2503]
 gi|303299872|gb|ADM09471.1| Cold shock protein [Parvularcula bermudensis HTCC2503]
          Length = 69

 Score = 90.8 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI PE   +   DVF+H +A+  +GL  L EG  VT++  ++  
Sbjct: 1  MATGTVKFFNTQKGFGFIQPE---DGSSDVFVHATALERSGLAPLNEGDKVTFETARDKR 57

Query: 62 NGKYSAENLKL 72
          +GK +   +++
Sbjct: 58 SGKMAVSTIQM 68


>gi|119470168|ref|ZP_01612934.1| nucleic acid-binding domain, cold-shock RNA chaperone
          [Alteromonadales bacterium TW-7]
 gi|119446589|gb|EAW27863.1| nucleic acid-binding domain, cold-shock RNA chaperone
          [Alteromonadales bacterium TW-7]
          Length = 72

 Score = 90.8 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  +G      D+F H S +   G   L  GQ VT++  Q   
Sbjct: 1  MACGKVKWFNNAKGFGFIVEDGCEN---DIFAHYSTIVMDGYKTLKAGQDVTFELEQGPK 57

Query: 62 NGKYSAENLKL 72
               A+N+ L
Sbjct: 58 G--LHAKNIAL 66


>gi|53804193|ref|YP_113979.1| cold shock protein [Methylococcus capsulatus str. Bath]
 gi|53757954|gb|AAU92245.1| cold shock protein [Methylococcus capsulatus str. Bath]
          Length = 69

 Score = 90.8 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V +G++KW+N  KGYGFI  E    SG D+F+H  ++   G   L EGQ V++  VQ   
Sbjct: 4  VQQGTVKWFNETKGYGFIQRE----SGADLFVHFRSILGEGFKTLKEGQRVSFVEVQGAK 59

Query: 62 NGKYSAENLKLV 73
               A+ + ++
Sbjct: 60 G--PQADQVSVI 69


>gi|253581856|ref|ZP_04859080.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
 gi|251836205|gb|EES64742.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
          Length = 65

 Score = 90.8 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFIT     E G D+F H S +   G   L E + VTYD ++     
Sbjct: 2  KGTVKWFNQEKGFGFIT----GEDGKDIFAHFSQIQKDGFKTLNENEEVTYDVIEGQKG- 56

Query: 64 KYSAENLK 71
             A N+K
Sbjct: 57 -PQAANIK 63


>gi|226954178|ref|ZP_03824642.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|294650208|ref|ZP_06727582.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC
          19194]
 gi|226835087|gb|EEH67470.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|292823914|gb|EFF82743.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC
          19194]
          Length = 70

 Score = 90.8 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      +SG DVF H S + S G   L EGQ VT+    +   G
Sbjct: 6  TGTVKWFNETKGFGFI----HADSGQDVFAHFSEIQSTGFKVLHEGQRVTFTIT-DGKKG 60

Query: 64 KYSAENLKLVP 74
             A  + +VP
Sbjct: 61 PQ-ATGITVVP 70


>gi|110598159|ref|ZP_01386437.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
 gi|110340291|gb|EAT58788.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
          Length = 69

 Score = 90.8 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KGYGFI      + G DVF+H SA+   G   L EGQ V  +  Q     
Sbjct: 6  EGTVKWFNEEKGYGFIEQ----KGGKDVFVHHSAINGTGRKTLVEGQKVLMEVTQGAKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 61 -LQAENVTPL 69


>gi|117924550|ref|YP_865167.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
          MC-1]
 gi|117608306|gb|ABK43761.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
          Length = 71

 Score = 90.8 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDAN 62
           G++KW+N DKG+GFI P+       DVF H S + + +G  +L EGQ V +     D  
Sbjct: 6  TGTVKWFNNDKGFGFIAPD---NGSKDVFAHFSEISSGSGFKSLEEGQKVEFSVEPGDKG 62

Query: 63 GK 64
           K
Sbjct: 63 PK 64


>gi|224012555|ref|XP_002294930.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
          pseudonana CCMP1335]
 gi|220969369|gb|EED87710.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
          pseudonana CCMP1335]
          Length = 102

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 1  MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M  R  G++KW++  KGYGFITP       +D+F+H+S++   G   L EG  V ++   
Sbjct: 1  MAERVLGNVKWFSNKKGYGFITPAEGATVAEDIFVHQSSIHCDGYRTLDEGWEVEFEIGH 60

Query: 59 NDANGKYSAENLK 71
          +D +GK  A ++ 
Sbjct: 61 DD-DGKVKAVSVT 72


>gi|332559893|ref|ZP_08414215.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N]
 gi|332277605|gb|EGJ22920.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N]
          Length = 68

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G+++W+N  KG+GF+ P        DVF+H +A+  AG+  L +GQ +TYD  + D 
Sbjct: 1  MANGTVQWFNATKGFGFVAP---AHGSKDVFVHVTALERAGIHQLNDGQALTYDM-ETDR 56

Query: 62 NGKYSAENLKL 72
          NG+ SA NL L
Sbjct: 57 NGRESATNLVL 67


>gi|297735007|emb|CBI17369.3| unnamed protein product [Vitis vinifera]
          Length = 208

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G ++W++  KG+GFITP    E G+D+F+H+S++ S G  +L EG+ V +  V  + +G
Sbjct: 7  TGVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGE-DG 62

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 63 RTKAVDVT 70


>gi|257453238|ref|ZP_05618537.1| cold-shock domain-contain protein [Fusobacterium sp. 3_1_5R]
 gi|257467171|ref|ZP_05631482.1| cold-shock domain-contain protein [Fusobacterium gonidiaformans
          ATCC 25563]
 gi|315918302|ref|ZP_07914542.1| cold-shock protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059772|ref|ZP_07924257.1| cold-shock protein [Fusobacterium sp. 3_1_5R]
 gi|313685448|gb|EFS22283.1| cold-shock protein [Fusobacterium sp. 3_1_5R]
 gi|313692177|gb|EFS29012.1| cold-shock protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 67

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFIT E +     D F+H S +A  G  +L EGQ VT++  +   
Sbjct: 1  MLKGTVKWFNNEKGFGFITGEDTV----DYFVHFSGIAGEGFKSLEEGQAVTFEVSEG-K 55

Query: 62 NGKYSAENLK 71
           G  + E  K
Sbjct: 56 KGPMAVEVTK 65


>gi|262368483|ref|ZP_06061812.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          johnsonii SH046]
 gi|262316161|gb|EEY97199.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          johnsonii SH046]
          Length = 69

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI+    +++G+DVF H S + S G   L EGQ V +  V    
Sbjct: 4  ITTGTVKWFNETKGFGFIS----SDTGEDVFAHFSEIQSNGFKVLNEGQRVQFTIVAGKK 59

Query: 62 NGKYSAENL 70
            + S+  +
Sbjct: 60 GPQASSITV 68


>gi|262371507|ref|ZP_06064821.1| cold shock protein [Acinetobacter johnsonii SH046]
 gi|294648334|ref|ZP_06725843.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194]
 gi|262313558|gb|EEY94611.1| cold shock protein [Acinetobacter johnsonii SH046]
 gi|292825776|gb|EFF84470.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194]
          Length = 71

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  E    SG DVF H S +AS+G   L EGQ+V +   Q     
Sbjct: 8  KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEIASSGFKTLMEGQMVEFSVAQGQKG- 62

Query: 64 KYSAENL 70
            +A N+
Sbjct: 63 -PNAVNI 68


>gi|262279162|ref|ZP_06056947.1| predicted protein [Acinetobacter calcoaceticus RUH2202]
 gi|262259513|gb|EEY78246.1| predicted protein [Acinetobacter calcoaceticus RUH2202]
          Length = 69

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF H   +AS+G   L EGQ VT++  Q     
Sbjct: 6  NGTVKWFNETKGFGFIQQE----SGPDVFAHFKEIASSGFKTLYEGQKVTFNIAQGQKG- 60

Query: 64 KYSAENL 70
            SA N+
Sbjct: 61 -PSAVNI 66


>gi|297580126|ref|ZP_06942053.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297535772|gb|EFH74606.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 70

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS+KW+N  KG+GF++ +     GDDVF+H +++ S G   L EGQ V+Y  V+    G 
Sbjct: 7  GSVKWFNETKGFGFLSQD---NGGDDVFVHFNSIVSTGFKTLAEGQKVSY-LVEKGKKGL 62

Query: 65 YSAENLKL 72
           +AE   L
Sbjct: 63 QAAEVTVL 70


>gi|87118640|ref|ZP_01074539.1| probable cold-shock protein [Marinomonas sp. MED121]
 gi|86166274|gb|EAQ67540.1| probable cold-shock protein [Marinomonas sp. MED121]
          Length = 158

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GF+T +    +G+DVF+H  A+   G   L EGQ V +   + +    
Sbjct: 93  GTVKWFNSSKGFGFLTRD----NGEDVFVHYRAIRGRGRRFLIEGQQVRFYVTEGEKG-- 146

Query: 65  YSAENLKLV 73
             AEN+ ++
Sbjct: 147 KQAENVSIL 155


>gi|262369668|ref|ZP_06062996.1| cold-shock domain-containing protein [Acinetobacter johnsonii
          SH046]
 gi|262315736|gb|EEY96775.1| cold-shock domain-containing protein [Acinetobacter johnsonii
          SH046]
          Length = 70

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G +KW+N  KG+GFI        GDDVF+H  A+   G  +L +GQ V +  V+   
Sbjct: 4  REQGVVKWFNDTKGFGFIQ----RNGGDDVFVHFRAIQGDGHRSLRDGQRVEFSVVKGQK 59

Query: 62 NGKYSAENLKLV 73
             + AE ++ +
Sbjct: 60 G--FQAEEVQPL 69


>gi|260494795|ref|ZP_05814925.1| cold shock domain-containing protein CspD [Fusobacterium sp.
          3_1_33]
 gi|260197957|gb|EEW95474.1| cold shock domain-containing protein CspD [Fusobacterium sp.
          3_1_33]
          Length = 71

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ V ++  +     
Sbjct: 7  KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVEFEITEGQKG- 61

Query: 64 KYSAENLKLVP 74
             A N+ ++ 
Sbjct: 62 -PQASNIVIIK 71


>gi|315126911|ref|YP_004068914.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Pseudoalteromonas sp.
          SM9913]
 gi|315015425|gb|ADT68763.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Pseudoalteromonas sp.
          SM9913]
          Length = 67

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N  KG+GFI  E    +G DVF+H SA+  +G   L+EGQ VT+   Q  
Sbjct: 1  MSVTGKVKFFNEAKGFGFIEQE----NGPDVFVHFSAITGSGFRTLSEGQAVTFSIKQGQ 56

Query: 61 ANGKYSAENLKL 72
             +  AEN+++
Sbjct: 57 KGPE--AENVEV 66


>gi|126740669|ref|ZP_01756355.1| cold shock family protein [Roseobacter sp. SK209-2-6]
 gi|126718184|gb|EBA14900.1| cold shock family protein [Roseobacter sp. SK209-2-6]
          Length = 68

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   E G DVF+H S V  +GL  L +   V Y+  +   
Sbjct: 1  MPSGTVKWFNTTKGFGFIEPD---EGGKDVFVHISQVERSGLSGLADNMKVDYELTEG-R 56

Query: 62 NGKYSAENLK 71
          +G+  A  LK
Sbjct: 57 DGRKMAGELK 66


>gi|119946327|ref|YP_944007.1| cold-shock DNA-binding domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119864931|gb|ABM04408.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii
          37]
          Length = 70

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GF+T +     G DVF H  A+AS G   L EGQ V+++  Q     
Sbjct: 6  TGLVKWFDEAKGFGFLTQD---NGGADVFCHFRAIASEGFKTLAEGQKVSFEVEQGQKG- 61

Query: 64 KYSAENL 70
             A N+
Sbjct: 62 -LQAGNV 67


>gi|150378053|ref|YP_001314648.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|150032600|gb|ABR64715.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
          Length = 67

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++  DKG+GFITP+     G DVF+H SA+  AG  +L +GQ V+Y+  Q+  
Sbjct: 1  MATGTVKFFAQDKGFGFITPDS---GGPDVFVHISALGFAG--SLQDGQKVSYELGQDRK 55

Query: 62 NGKYSAENLKLV 73
           GK  AEN+  +
Sbjct: 56 TGKSKAENVSAL 67


>gi|315633923|ref|ZP_07889212.1| CspA family cold shock transcriptional regulator [Aggregatibacter
          segnis ATCC 33393]
 gi|315477173|gb|EFU67916.1| CspA family cold shock transcriptional regulator [Aggregatibacter
          segnis ATCC 33393]
          Length = 69

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI PE   +   DVF+H S +       L EG  V ++ VQ+   G
Sbjct: 5  NGTVKWFNSTKGFGFIAPE---DGSKDVFVHFSGIVGNNFRTLNEGDRVAFN-VQDSQRG 60

Query: 64 KYSAENLKLV 73
             A +++++
Sbjct: 61 PT-AVDVEVI 69


>gi|302392304|ref|YP_003828124.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum
          DSM 5501]
 gi|302204381|gb|ADL13059.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum
          DSM 5501]
          Length = 66

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++  KGYGFI   G     DDVF+H SA+   G   L EGQ V +  V+ D 
Sbjct: 1  MKTGTVKWFDGKKGYGFIEVPGE----DDVFVHFSAIEEEGFKTLEEGQEVQFKVVEGD- 55

Query: 62 NGKYSAENLKL 72
           G  + E  K+
Sbjct: 56 KGPQAEEVTKI 66


>gi|163801254|ref|ZP_02195153.1| cold shock transcriptional regulator CspA [Vibrio sp. AND4]
 gi|159174743|gb|EDP59543.1| cold shock transcriptional regulator CspA [Vibrio sp. AND4]
          Length = 69

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF+T +   + G DVF+H +A+ S G   L EGQ V++  V+    G
Sbjct: 5  TGSVKWFNESKGFGFLTQD---DGGKDVFVHFNAIVSDGFKTLAEGQKVSFK-VEEGQKG 60

Query: 64 KYSAENLKL 72
            + E   L
Sbjct: 61 PQATEVTPL 69


>gi|119476408|ref|ZP_01616759.1| cold-shock domain family protein [marine gamma proteobacterium
          HTCC2143]
 gi|119450272|gb|EAW31507.1| cold-shock domain family protein [marine gamma proteobacterium
          HTCC2143]
          Length = 69

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G+IKW+N  KG+GFI        G D+F+H  ++   G   L EGQ V +  V+     
Sbjct: 6  TGTIKWFNNAKGFGFIAQ----TEGADIFVHFRSIRGEGYKTLDEGQEVEFTVVEGAKG- 60

Query: 64 KYSAENL 70
             AE++
Sbjct: 61 -LQAEDV 66


>gi|90021554|ref|YP_527381.1| cold-shock DNA-binding protein family protein [Saccharophagus
          degradans 2-40]
 gi|89951154|gb|ABD81169.1| cold-shock DNA-binding protein family [Saccharophagus degradans
          2-40]
          Length = 69

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFI+ E     G+D+F+H S +  +G   L EGQ V++   +     
Sbjct: 6  NGTVKWFNESKGYGFISRE----GGNDLFVHFSNITGSGFKTLKEGQSVSF--TEGMGQK 59

Query: 64 KYSAENLKLV 73
             AEN++ +
Sbjct: 60 GPQAENVEPL 69


>gi|77457312|ref|YP_346817.1| cold-shock DNA-binding protein family protein [Pseudomonas
          fluorescens Pf0-1]
 gi|77381315|gb|ABA72828.1| major cold shock protein [Pseudomonas fluorescens Pf0-1]
          Length = 69

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFI  E     G DVF+H  A+   G  +LTEGQ V Y  V+   
Sbjct: 4  RETGNVKWFNDAKGYGFIQRE----DGVDVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQK 59

Query: 62 NGKYSAENL 70
               AE++
Sbjct: 60 G--LQAEDV 66


>gi|2493771|sp|P72188|CAPA_PSEFR RecName: Full=Cold shock protein CapA; AltName: Full=C7.0;
          AltName: Full=Cold acclimation protein A
 gi|1513079|gb|AAC45996.1| cold acclimation protein A [Pseudomonas fragi]
          Length = 64

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ V++   +   
Sbjct: 4  RQSGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAEKGQ 59

Query: 62 NGKYS 66
           G  +
Sbjct: 60 KGMQA 64


>gi|325121558|gb|ADY81081.1| probable cold-shock protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 71

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      + G D+F H + + + G   L EGQ V +  VQ     
Sbjct: 5  TGTVKWFNETKGFGFIA----ADEGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQGKKG- 59

Query: 64 KYSAENLKLVPKS 76
             A N+ ++  S
Sbjct: 60 -PQASNIVILQNS 71


>gi|302875711|ref|YP_003844344.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307689143|ref|ZP_07631589.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302578568|gb|ADL52580.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans
          743B]
          Length = 68

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          +  G++KW+N +KG+GFI  EG     +DVF+H SA+ S     NL EG+ V ++  Q  
Sbjct: 1  MKTGTVKWFNQEKGFGFIEVEGE----NDVFVHFSAIQSDSPRKNLEEGEKVEFEVEQG- 55

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 56 PKGLQAANVVKL 67


>gi|117926184|ref|YP_866801.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
          MC-1]
 gi|117609940|gb|ABK45395.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
          Length = 71

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDAN 62
           G++KW+N DKG+GFI P+       DVF H S + + +G  +L EGQ V ++    D  
Sbjct: 6  TGTVKWFNNDKGFGFIAPD---NGSKDVFAHFSEISSGSGFKSLEEGQKVEFNVEPGDKG 62

Query: 63 GK 64
           K
Sbjct: 63 PK 64


>gi|294139961|ref|YP_003555939.1| cold shock-like protein cspE [Shewanella violacea DSS12]
 gi|293326430|dbj|BAJ01161.1| cold shock-like protein cspE [Shewanella violacea DSS12]
          Length = 68

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKG+GFITPE   +   D+F+H S + S G    L +GQ V Y+  Q  
Sbjct: 1  MSKGTVKWFNADKGFGFITPE---DGSKDLFVHHSEIQSGGDYATLNDGQAVEYEVGQGQ 57

Query: 61 ANG 63
             
Sbjct: 58 KGP 60


>gi|284046448|ref|YP_003396788.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
 gi|283950669|gb|ADB53413.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM
          14684]
          Length = 67

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++ DKG+GFITP+  +    D+F+H + + S G  +L EG  V+YD      
Sbjct: 1  MATGTVKWFSDDKGFGFITPDDQS---KDLFVHHTGIISDGYRSLPEGAKVSYDSEPGPK 57

Query: 62 NGKYSAENLK 71
            K  A N++
Sbjct: 58 GPK--AVNVQ 65


>gi|326796223|ref|YP_004314043.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
 gi|326546987|gb|ADZ92207.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea
          MMB-1]
          Length = 69

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT E     G DVF+H SA+  +G   L EGQ V ++   +   G
Sbjct: 6  TGTVKFFNETKGFGFITQEQ----GPDVFVHFSAINVSGFKTLAEGQKVQFEVA-DGKKG 60

Query: 64 KYSAENLKLV 73
             A+N+  +
Sbjct: 61 PE-AQNVTPL 69


>gi|163802491|ref|ZP_02196384.1| bifunctional GMP synthase/glutamine amidotransferase protein
          [Vibrio sp. AND4]
 gi|159173792|gb|EDP58607.1| bifunctional GMP synthase/glutamine amidotransferase protein
          [Vibrio sp. AND4]
          Length = 70

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF+T +     G DVF+H  A+ S G   L EGQ V++   Q    G
Sbjct: 6  TGSVKWFNESKGFGFLTQD---NGGADVFVHFQAIVSEGFKTLVEGQKVSFSVEQG-PKG 61

Query: 64 KYSAENL 70
            +A  +
Sbjct: 62 LQAANVV 68


>gi|237736040|ref|ZP_04566521.1| cold-shock protein [Fusobacterium mortiferum ATCC 9817]
 gi|229421854|gb|EEO36901.1| cold-shock protein [Fusobacterium mortiferum ATCC 9817]
          Length = 71

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GF+T    +E G D F+H + +   G   L EGQ VT++  +   
Sbjct: 6  MLKGTVKWFNKEKGFGFVT----SEDGADYFVHFTGIVGEGFRTLEEGQAVTFEVTEGKK 61

Query: 62 NGKYSAENLKL 72
               A ++K+
Sbjct: 62 G--PMAVDVKV 70


>gi|300309840|ref|YP_003773932.1| cold-shock transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
 gi|300072625|gb|ADJ62024.1| cold-shock transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
          Length = 70

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N  KG+GFITP+     G DVF H   + S G  +L+E Q V++D       
Sbjct: 4  QTGVVKWFNDAKGFGFITPDA---GGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKG 60

Query: 63 GKYSAENLKLV 73
              A N+K++
Sbjct: 61 --EKATNIKVI 69


>gi|258542278|ref|YP_003187711.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-01]
 gi|329113442|ref|ZP_08242223.1| Cold shock-like protein CspE [Acetobacter pomorum DM001]
 gi|256633356|dbj|BAH99331.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636415|dbj|BAI02384.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639468|dbj|BAI05430.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642524|dbj|BAI08479.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645579|dbj|BAI11527.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648632|dbj|BAI14573.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651685|dbj|BAI17619.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654676|dbj|BAI20603.1| transcriptional regulator cold shock protein [Acetobacter
           pasteurianus IFO 3283-12]
 gi|326697267|gb|EGE48927.1| Cold shock-like protein CspE [Acetobacter pomorum DM001]
          Length = 225

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG++KWYN  KG+GFITPE     G D+F+H SA+  +GL  L EGQ V    VQ    G
Sbjct: 161 RGTVKWYNSVKGFGFITPES---GGKDIFVHASALERSGLSALNEGQGVNVKVVQGQ-KG 216

Query: 64  KYSAEN 69
             +AE 
Sbjct: 217 PEAAEV 222



 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N +KG+GF+      +   DVFLH +A++ AG   ++ G  +     Q    G+ 
Sbjct: 63  TVKWFNSEKGFGFVE---LADGTGDVFLHANALSQAGHQGVSPGATLVVRIGQG-PKGRQ 118

Query: 66  SAENLKLVPKSSN 78
            AE + +   ++ 
Sbjct: 119 VAEVISVDESTAQ 131


>gi|152995290|ref|YP_001340125.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836214|gb|ABR70190.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
           MWYL1]
          Length = 156

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++KW+N  KG+GF+T     E+GDDVF+H  A+   G   L EGQLV +   + +   
Sbjct: 91  QGTVKWFNSSKGFGFLT----MENGDDVFVHYRAIRGRGRRFLVEGQLVRFYVTEGEKG- 145

Query: 64  KYSAENLKLV 73
              AEN+ ++
Sbjct: 146 -KQAENVSII 154


>gi|19703863|ref|NP_603425.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC
          25586]
 gi|254304125|ref|ZP_04971483.1| cold shock protein CspC [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
 gi|256844890|ref|ZP_05550348.1| cold shock domain-containing protein CspD [Fusobacterium sp.
          3_1_36A2]
 gi|294785827|ref|ZP_06751115.1| cold shock protein [Fusobacterium sp. 3_1_27]
 gi|296329383|ref|ZP_06871883.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC
          23726]
 gi|19714023|gb|AAL94724.1| Cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC
          25586]
 gi|148324317|gb|EDK89567.1| cold shock protein CspC [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
 gi|256718449|gb|EEU32004.1| cold shock domain-containing protein CspD [Fusobacterium sp.
          3_1_36A2]
 gi|294487541|gb|EFG34903.1| cold shock protein [Fusobacterium sp. 3_1_27]
 gi|296153503|gb|EFG94321.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC
          23726]
          Length = 71

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ V ++  +     
Sbjct: 7  KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVEFEITEGQKG- 61

Query: 64 KYSAENLKLVP 74
             A N+ ++ 
Sbjct: 62 -PQASNIVVIK 71


>gi|262368477|ref|ZP_06061806.1| cold shock protein [Acinetobacter johnsonii SH046]
 gi|262316155|gb|EEY97193.1| cold shock protein [Acinetobacter johnsonii SH046]
          Length = 69

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF H   +AS+G   L EGQ V++   Q    G
Sbjct: 6  TGTVKWFNETKGFGFIQQE----SGPDVFAHFREIASSGFKTLHEGQQVSFSIEQGQ-KG 60

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 61 PNAVNIVAL 69


>gi|262374770|ref|ZP_06068038.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
 gi|262310301|gb|EEY91397.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
          Length = 71

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  E    SG DVF H S ++S+G   L EGQ+V +   Q     
Sbjct: 8  KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEISSSGFKTLMEGQMVEFSVAQGQKG- 62

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 63 -PNAVNIVAI 71


>gi|302385946|ref|YP_003821768.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
 gi|302196574|gb|ADL04145.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
          Length = 66

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI      E G+D+F+H S +A  G  +L +GQ V ++   N A
Sbjct: 1  MKKGTVKWFNAQKGFGFIC----DEEGNDIFVHFSGLAMEGFKSLEDGQSVIFE-TTNGA 55

Query: 62 NGKYSAENLKL 72
           G   A N+ +
Sbjct: 56 RG-LQAVNVHI 65


>gi|262373766|ref|ZP_06067044.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
 gi|262311519|gb|EEY92605.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
          Length = 71

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  E    SG DVF H S ++++G   L EGQ+V +   Q     
Sbjct: 8  KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEISNSGFKTLFEGQMVEFSIAQGQKG- 62

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 63 -PNAVNITAL 71


>gi|118591841|ref|ZP_01549236.1| cold shock protein [Stappia aggregata IAM 12614]
 gi|118435484|gb|EAV42130.1| cold shock protein [Stappia aggregata IAM 12614]
          Length = 286

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++K++  DKG+GFITP+   E   DVF+H SAV  +G   L  GQ V+++   +  
Sbjct: 202 RQSGTVKFFKNDKGFGFITPD---EGDADVFVHISAVERSGFAGLDSGQRVSFETEPDRR 258

Query: 62  NGKYSAENLKLVPK 75
                A NL+ +  
Sbjct: 259 GKGPKAVNLQALED 272


>gi|117926229|ref|YP_866846.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
          MC-1]
 gi|117609985|gb|ABK45440.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
          Length = 69

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++K++N  KGYGFI+ E     G DVF+H SA+  +G   LT+GQ V +D VQ   
Sbjct: 4  REVGTVKFFNEQKGYGFISRE----DGSDVFVHFSAIQGSGFRTLTQGQKVEFDTVQGKK 59

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 60 G--LQAENVT 67


>gi|332716945|ref|YP_004444411.1| Cold shock protein cspA [Agrobacterium sp. H13-3]
 gi|325063630|gb|ADY67320.1| Cold shock protein cspA [Agrobacterium sp. H13-3]
          Length = 67

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++  DKG+GFITP+     G DVF+H SAV   G  +L +GQ V+YD  Q+  
Sbjct: 1  MATGTVKFFAQDKGFGFITPD---NGGPDVFVHISAVGFGG--SLQDGQKVSYDVGQDRK 55

Query: 62 NGKYSAENLKLV 73
           GK  AEN+ L+
Sbjct: 56 TGKSKAENVSLI 67


>gi|91083993|ref|XP_975245.1| PREDICTED: similar to AGAP006591-PA [Tribolium castaneum]
          Length = 195

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG  KW+N  KG+GFITP+   + G DVF+H+S +  +G  +L + + V ++   +D 
Sbjct: 39 LRRGKCKWFNVAKGWGFITPD---DGGQDVFVHQSVIQMSGFRSLGDDEEVEFECQVSDK 95

Query: 62 N 62
           
Sbjct: 96 G 96


>gi|15233440|ref|NP_195326.1| CSDP1 (cold shock domain protein 1); RNA binding /
          double-stranded DNA binding / nucleic acid binding /
          single-stranded DNA binding [Arabidopsis thaliana]
 gi|3036806|emb|CAA18496.1| glycine-rich protein [Arabidopsis thaliana]
 gi|7270554|emb|CAB81511.1| glycine-rich protein [Arabidopsis thaliana]
 gi|110741941|dbj|BAE98911.1| glycine-rich protein [Arabidopsis thaliana]
 gi|332661203|gb|AEE86603.1| cellular nucleic acid-binding protein [Arabidopsis thaliana]
          Length = 299

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G + W+N  KGYGFITP+   +   ++F+H+S++ S G  +LT G  V +   Q  ++G
Sbjct: 12 TGKVNWFNASKGYGFITPD---DGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQG-SDG 67

Query: 64 KYSAENLK 71
          K  A N+ 
Sbjct: 68 KTKAVNVT 75


>gi|262198097|ref|YP_003269306.1| cold-shock DNA-binding domain protein [Haliangium ochraceum DSM
          14365]
 gi|262081444|gb|ACY17413.1| cold-shock DNA-binding domain protein [Haliangium ochraceum DSM
          14365]
          Length = 94

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI      E G DVF+H S + + G   LTEG++V Y+  Q   
Sbjct: 1  MPTGAVKWFNNVKGYGFI----LREDGQDVFVHWSNILADGYRLLTEGEIVEYEL-QEGP 55

Query: 62 NGKYSAENLKLVPKS 76
           G ++A+     P S
Sbjct: 56 KGLFAAQVKSRDPSS 70


>gi|16262844|ref|NP_435637.1| CspA6 cold shock protein transcriptional regulator [Sinorhizobium
          meliloti 1021]
 gi|307322440|ref|ZP_07601795.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|307322706|ref|ZP_07602031.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|14523481|gb|AAK65049.1| CspA6 cold shock protein [Sinorhizobium meliloti 1021]
 gi|306891645|gb|EFN22506.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306891926|gb|EFN22757.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
          Length = 67

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++  DKG+GFITP+     G DVF+H SA+   G  +L +GQ V+Y+  Q+  
Sbjct: 1  MATGTVKFFAQDKGFGFITPD---NGGPDVFVHISALGFGG--SLQDGQKVSYELGQDRK 55

Query: 62 NGKYSAENLKLV 73
           GK  AEN+ ++
Sbjct: 56 TGKSKAENVSIL 67


>gi|299770790|ref|YP_003732816.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
 gi|298700878|gb|ADI91443.1| Cold shock-like protein cspG [Acinetobacter sp. DR1]
          Length = 69

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +     G DVF H   ++S+G   L EGQ V+++  Q      
Sbjct: 7  GTVKWFNETKGFGFIQQDA----GPDVFAHFKEISSSGFKTLYEGQRVSFNIAQGQKG-- 60

Query: 65 YSAENLKL 72
           SA N+ +
Sbjct: 61 PSAINIVV 68


>gi|255318974|ref|ZP_05360199.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
 gi|262378290|ref|ZP_06071447.1| cold shock domain-containing protein CspD [Acinetobacter
          radioresistens SH164]
 gi|255303991|gb|EET83183.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
 gi|262299575|gb|EEY87487.1| cold shock domain-containing protein CspD [Acinetobacter
          radioresistens SH164]
          Length = 69

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  E    SG DVF H S + + G   L EGQ V +  V +   G
Sbjct: 6  KGTVKWFNETKGFGFIQQE----SGPDVFAHYSEITNQGFKTLYEGQQVQFTVV-DGKKG 60

Query: 64 KYSAENLKLV 73
             A N+ LV
Sbjct: 61 PQ-ASNITLV 69


>gi|119358122|ref|YP_912766.1| cold-shock DNA-binding protein family protein [Chlorobium
          phaeobacteroides DSM 266]
 gi|119355471|gb|ABL66342.1| cold-shock DNA-binding protein family [Chlorobium
          phaeobacteroides DSM 266]
          Length = 70

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KGYGFI      + G DVF+H SA+  +G  +LTEGQ V  + VQ     
Sbjct: 6  EGTVKWFNEEKGYGFIAQ----KEGKDVFVHHSAIKGSGRKSLTEGQKVLMEVVQGAKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 61 -LQAENVTPL 69


>gi|284029203|ref|YP_003379134.1| cold-shock DNA-binding domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283808496|gb|ADB30335.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM
          17836]
          Length = 66

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG++KW+N DKGYGF+  EG     DDVF+H S + S G   L +GQ V ++ V +  
Sbjct: 1  MVRGTVKWFNADKGYGFLAVEGQ----DDVFVHWSKIVSDGYKTLEDGQQVEFEVV-DGP 55

Query: 62 NGKYS 66
           G+ +
Sbjct: 56 KGREA 60


>gi|52425199|ref|YP_088336.1| CspC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307251|gb|AAU37751.1| CspC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 70

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N DKG+GFITP    +   D+F+H S++      +L EG  V Y+ V+N   G
Sbjct: 5  NGLVKWFNSDKGFGFITP---ADGSKDLFVHFSSILGNNYRSLNEGDRVEYN-VENTQRG 60

Query: 64 KYSAENLKLVP 74
            +A  + ++ 
Sbjct: 61 P-AAVEVAVIK 70


>gi|85709645|ref|ZP_01040710.1| cold shock protein [Erythrobacter sp. NAP1]
 gi|85688355|gb|EAQ28359.1| cold shock protein [Erythrobacter sp. NAP1]
          Length = 262

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++K++N  KG+GFI  E     G+DVF+H SAV  AGL  L EGQ + ++ V  D  G
Sbjct: 108 KGTVKFFNGQKGFGFIQQES---GGEDVFVHISAVERAGLEGLAEGQELEFNLV--DRGG 162

Query: 64  KYSAENLKLV 73
           K SA++L++V
Sbjct: 163 KVSAQDLQVV 172



 Score = 76.9 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++K++N  KG+GF+  +   +   D F+H SAV  +GL  + EG+   +D  + D  G
Sbjct: 195 TGTVKFFNSMKGFGFLVRD---DGQPDAFVHISAVERSGLSAINEGERFEFDL-EVDRRG 250

Query: 64  KYSAENLKLV 73
           KYSA NL  V
Sbjct: 251 KYSAVNLVPV 260


>gi|330983366|gb|EGH81469.1| cold shock domain family protein [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 55

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
             G++KW+N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+
Sbjct: 4  RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTF 52


>gi|254227848|ref|ZP_04921279.1| conserved domain protein [Vibrio sp. Ex25]
 gi|262395888|ref|YP_003287741.1| cold shock protein CspA [Vibrio sp. Ex25]
 gi|151939890|gb|EDN58717.1| conserved domain protein [Vibrio sp. Ex25]
 gi|262339482|gb|ACY53276.1| cold shock protein CspA [Vibrio sp. Ex25]
          Length = 69

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GF++ +     G DVF+H +A+ S G   LTEGQ V+++  Q    G
Sbjct: 5  NGSVKWFNETKGFGFLSQD---NGGQDVFVHFNAIVSDGFKTLTEGQKVSFNVEQG-KKG 60

Query: 64 KYSAENLKL 72
            + E   L
Sbjct: 61 PQATEVTPL 69


>gi|307721642|ref|YP_003892782.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica
          DSM 16294]
 gi|306979735|gb|ADN09770.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica
          DSM 16294]
          Length = 72

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQN 59
          +  G++KW+N DKG+GFI  E   + G DVF+H   +   G    +L EGQ VT++  Q 
Sbjct: 4  LQNGTVKWFNSDKGFGFIEVE---DGGKDVFVHYRQINDNGHSRVSLDEGQKVTFEIGQG 60

Query: 60 DANGKYSAENLK 71
          D      AEN+ 
Sbjct: 61 DKG--PQAENVT 70


>gi|17547875|ref|NP_521277.1| cold shock-like transcription regulator protein [Ralstonia
          solanacearum GMI1000]
 gi|17430181|emb|CAD16944.1| probable cold shock-like cspc transcription regulator protein
          [Ralstonia solanacearum GMI1000]
          Length = 67

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H S +  +G   L EG+ V Y       
Sbjct: 1  METGTVKWFNESKGFGFITPDA---GGNDLFAHFSEIQGSGFKTLQEGEKVRY-VAGVGQ 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPAA 61


>gi|254196032|ref|ZP_04902457.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
 gi|169652776|gb|EDS85469.1| cold-shock domain family protein [Burkholderia pseudomallei S13]
          Length = 57

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V+++      
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMEGFKTLKENQRVSFEVKTGPK 57


>gi|262279640|ref|ZP_06057425.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          calcoaceticus RUH2202]
 gi|262259991|gb|EEY78724.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          calcoaceticus RUH2202]
          Length = 71

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI     T+ G D+F H + + + G   L EGQ V +  VQ     
Sbjct: 5  TGTVKWFNETKGFGFIV----TDEGKDIFAHFTDIQTPGFKVLLEGQRVEFTVVQGKKG- 59

Query: 64 KYSAENLKLVPKS 76
             A N+ +V  S
Sbjct: 60 -PQASNIVIVQNS 71


>gi|227832058|ref|YP_002833765.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
 gi|262184088|ref|ZP_06043509.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
 gi|227453074|gb|ACP31827.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
          Length = 67

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N +KGYGFI  E   +   D+F+H + +   G   L + Q V+++  ++  
Sbjct: 1  MAYGTVKFFNAEKGYGFIEQE---DGSGDIFVHYTEIQGTGFRTLEDNQRVSFEIGEDAK 57

Query: 62 NGKYSAENLKLV 73
               A N+++V
Sbjct: 58 G--QQATNVEVV 67


>gi|15604514|ref|NP_221032.1| cold shock-like protein (cspA) [Rickettsia prowazekii str. Madrid
          E]
 gi|6225211|sp|Q9ZCP9|CSPA_RICPR RecName: Full=Cold shock-like protein CspA
 gi|3861208|emb|CAA15108.1| COLD SHOCK-LIKE PROTEIN (cspA) [Rickettsia prowazekii]
 gi|292572298|gb|ADE30213.1| Cold shock-like protein [Rickettsia prowazekii Rp22]
          Length = 70

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  +     G DVF+H+SA+ +AGL +L EGQ V +D  +    GK
Sbjct: 7  GKVKWYNSTKNFGFIEQD---NGGKDVFVHKSAIDAAGLHSLEEGQEVIFDIEE--KQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAVNLRV 69


>gi|187928399|ref|YP_001898886.1| cold-shock DNA-binding domain-containing protein [Ralstonia
          pickettii 12J]
 gi|241662975|ref|YP_002981335.1| cold-shock DNA-binding domain-containing protein [Ralstonia
          pickettii 12D]
 gi|309782106|ref|ZP_07676836.1| cold-shock DNA-binding domain protein [Ralstonia sp. 5_7_47FAA]
 gi|187725289|gb|ACD26454.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J]
 gi|240865002|gb|ACS62663.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
 gi|308919172|gb|EFP64839.1| cold-shock DNA-binding domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 67

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFITP+     G+D+F H S V   G  +L EGQ V Y       
Sbjct: 1  METGTVKWFNDSKGFGFITPDA---GGNDLFAHFSEVQGNGFKSLQEGQKVRY-VAGVGQ 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPAA 61


>gi|254502619|ref|ZP_05114770.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222438690|gb|EEE45369.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 307

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G +K++  DKG+GFITP+   +   DVF+H SAV  +GL +L  GQ ++++   +  
Sbjct: 214 RQSGVVKFFKSDKGFGFITPD---DGETDVFVHISAVERSGLASLDSGQRISFETEPDRR 270

Query: 62  NGKYSAENLKLVPKSSN 78
                A NL+++ +  +
Sbjct: 271 GKGPKAVNLQMLEEDGS 287


>gi|153953338|ref|YP_001394103.1| CspA [Clostridium kluyveri DSM 555]
 gi|219853967|ref|YP_002471089.1| hypothetical protein CKR_0624 [Clostridium kluyveri NBRC 12016]
 gi|146346219|gb|EDK32755.1| CspA [Clostridium kluyveri DSM 555]
 gi|219567691|dbj|BAH05675.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 67

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N +KG+GFI   G     +DVF+H +A+ S     NL EGQ V +D V+  
Sbjct: 1  MKTGTVKWFNSEKGFGFIEVPGE----NDVFVHFTAIQSNEARKNLEEGQKVQFD-VEEG 55

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 56 PKGLQAANVVKL 67


>gi|152997268|ref|YP_001342103.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
          MWYL1]
 gi|150838192|gb|ABR72168.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
          MWYL1]
          Length = 87

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H GS+KW+N  KGYGFI  E   E   D+F+H SA+   G   L  GQ VT++ V+   
Sbjct: 1  MHHGSVKWFNNAKGYGFIVSEDFNE---DLFIHYSAINIEGYKTLKAGQAVTFN-VEPGE 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G ++ E     PK + 
Sbjct: 57 RGLHAIEINPTSPKETK 73


>gi|82701971|ref|YP_411537.1| cold-shock DNA-binding domain-containing protein [Nitrosospira
          multiformis ATCC 25196]
 gi|82410036|gb|ABB74145.1| cold-shock DNA-binding protein family [Nitrosospira multiformis
          ATCC 25196]
          Length = 69

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW++ DKG+GFIT +   E G D+F H S++   G   L E Q VT+D V     
Sbjct: 4  ETGIVKWFSDDKGFGFITSD---EGGKDLFAHFSSIVGEGFKTLQEAQRVTFDVVSGPKG 60

Query: 63 GKYSAENLK 71
              A N++
Sbjct: 61 --LQASNIR 67


>gi|330948982|gb|EGH49242.1| cold shock protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 54

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 4/53 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
             G++KW+N +KG+GFITP    +SGDD+F+H  A+ S G  +L EGQ V++
Sbjct: 6  RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSF 54


>gi|285017922|ref|YP_003375633.1| cold shock protein [Xanthomonas albilineans GPE PC73]
 gi|283473140|emb|CBA15646.1| probable cold shock protein [Xanthomonas albilineans]
          Length = 73

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N  KG+GFI+      +G+DVF+H  A+ + G  +L EGQ V++  VQ   
Sbjct: 8  REVGLVKWFNDAKGFGFIS----RTNGEDVFVHFRAIQTQGFKSLKEGQKVSFIVVQGQK 63

Query: 62 NGKYSAENLKLV 73
               A+ ++ V
Sbjct: 64 G--LQADAVQPV 73


>gi|91205892|ref|YP_538247.1| cold shock-like protein [Rickettsia bellii RML369-C]
 gi|157826747|ref|YP_001495811.1| cold shock-like protein [Rickettsia bellii OSU 85-389]
 gi|91069436|gb|ABE05158.1| Cold shock-like protein [Rickettsia bellii RML369-C]
 gi|157802051|gb|ABV78774.1| Cold shock-like protein [Rickettsia bellii OSU 85-389]
          Length = 100

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP K +GFI  E     G DVF+HRSAV +AGL  L EGQ V +D    D NGK
Sbjct: 37 GKVKWFNPTKNFGFIEQE---NGGKDVFVHRSAVDAAGLAGLNEGQDVIFDL--EDKNGK 91

Query: 65 YSAENLKL 72
           SA NL++
Sbjct: 92 ISAVNLRI 99


>gi|307313947|ref|ZP_07593562.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|306899221|gb|EFN29859.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 67

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++  DKG+GFITP+     G DVF+H SA+   G  +L +GQ V+Y+  Q+  
Sbjct: 1  MATGTVKFFAQDKGFGFITPDS---GGPDVFVHISALGFGG--SLQDGQKVSYELGQDRK 55

Query: 62 NGKYSAENLKLV 73
           GK  AEN+ ++
Sbjct: 56 TGKSKAENVSIL 67


>gi|262372757|ref|ZP_06066036.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
 gi|262312782|gb|EEY93867.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
          Length = 72

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      +SG DVF H S + S G   L EGQ V++   Q     
Sbjct: 6  TGTVKWFNETKGFGFI----HADSGQDVFAHFSEIQSNGFKVLHEGQRVSFTVAQGKKG- 60

Query: 64 KYSAENLKLVPK 75
             A  + +V +
Sbjct: 61 -PQATGITVVAQ 71


>gi|312959376|ref|ZP_07773893.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
 gi|311286093|gb|EFQ64657.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
          Length = 69

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KGYGFI  E     G DVF+H  A+   G  +L EGQ V Y  V  + 
Sbjct: 4  RETGNVKWFNDAKGYGFIQRE----DGKDVFVHYRAIRGEGHRSLAEGQQVEYAVVSGEK 59

Query: 62 NGKYSAENL 70
               AE++
Sbjct: 60 G--LQAEDV 66


>gi|77360127|ref|YP_339702.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Pseudoalteromonas
          haloplanktis TAC125]
 gi|332534950|ref|ZP_08410769.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505]
 gi|76875038|emb|CAI86259.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Pseudoalteromonas
          haloplanktis TAC125]
 gi|332035623|gb|EGI72114.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505]
          Length = 67

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N  KG+GFI  E    +G DVF+H SA+  +G   L+EGQ VT+   Q  
Sbjct: 1  MSVTGKVKFFNEAKGFGFIEQE----NGPDVFVHFSAITGSGFRTLSEGQAVTFSIKQGQ 56

Query: 61 ANGKYSAENLK 71
             +  AEN++
Sbjct: 57 KGPE--AENVE 65


>gi|322831731|ref|YP_004211758.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|321166932|gb|ADW72631.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
          Length = 70

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+ S     L EGQ V +   +N   G
Sbjct: 6  TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFTI-ENGQKG 61

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 62 PSAGNVVVL 70


>gi|257453190|ref|ZP_05618489.1| cold shock protein [Fusobacterium sp. 3_1_5R]
 gi|257467346|ref|ZP_05631657.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918476|ref|ZP_07914716.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059724|ref|ZP_07924209.1| cold shock protein [Fusobacterium sp. 3_1_5R]
 gi|313685400|gb|EFS22235.1| cold shock protein [Fusobacterium sp. 3_1_5R]
 gi|313692351|gb|EFS29186.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 66

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ VT+D  +     
Sbjct: 2  KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVTFDITEGQKG- 56

Query: 64 KYSAENLKLVP 74
             A N+ +V 
Sbjct: 57 -PQASNIVIVK 66


>gi|123187095|gb|ABM69256.1| CspA-like protein [Arthrobacter sp. B5]
          Length = 66

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  +     G DVF H SA+   G   L EGQ V++  + +   G
Sbjct: 6  EGTVKWFNEAKGFGFIAQD---NGGQDVFAHYSAIQGGGFKTLAEGQKVSF-ILGDGKKG 61

Query: 64 KYS 66
            +
Sbjct: 62 PQA 64


>gi|299770874|ref|YP_003732900.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1]
 gi|298700962|gb|ADI91527.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1]
          Length = 71

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI     T+ G D+F H + + + G   L EGQ V +  VQ     
Sbjct: 5  TGTVKWFNETKGFGFIV----TDEGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQGKKG- 59

Query: 64 KYSAENLKLVPKS 76
             A N+ ++  S
Sbjct: 60 -PQASNIVILQNS 71


>gi|294676164|ref|YP_003576779.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003]
 gi|294474984|gb|ADE84372.1| cold shock protein CspA-1 [Rhodobacter capsulatus SB 1003]
          Length = 68

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N +KG+GFI PEG      DVF+H SAV  AG+  L +G  VT+   ++  
Sbjct: 1  MANGTVKFFNQNKGFGFIEPEG---GAQDVFVHISAVERAGISRLVDGAKVTFQI-ESGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA +L LV
Sbjct: 57 DGRKSACDLALV 68


>gi|169786884|ref|YP_001705697.1| cold shock protein [Acinetobacter baumannii SDF]
 gi|260558148|ref|ZP_05830357.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
 gi|169150801|emb|CAP02995.1| cold shock protein [Acinetobacter baumannii]
 gi|260408376|gb|EEX01685.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
          Length = 71

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  E    SG DVF H S +AS+G   L EGQ V +   Q     
Sbjct: 8  KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEIASSGFKTLFEGQQVEFSVAQGQKG- 62

Query: 64 KYSAENLKLV 73
            +A N+  +
Sbjct: 63 -PNAVNIVAI 71


>gi|254785982|ref|YP_003073411.1| cspA cold-shock DNA-binding domain-containing protein
          [Teredinibacter turnerae T7901]
 gi|237687500|gb|ACR14764.1| cspA cold-shock DNA-binding domain protein [Teredinibacter
          turnerae T7901]
          Length = 69

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KGYGFI+ E     G D+F+H S +  +G   L EGQ VT+   +     
Sbjct: 6  NGTVKWFNESKGYGFISRE----GGADLFVHFSNIIGSGFKTLKEGQAVTF--TEGTGQK 59

Query: 64 KYSAENLK 71
             AEN++
Sbjct: 60 GPQAENVE 67


>gi|27377231|ref|NP_768760.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27350374|dbj|BAC47385.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 68

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  KGYGFI P+   +   DVF+H  +V  AG  +L EG  ++++  +  +
Sbjct: 1  MATGIVKWFSATKGYGFIKPD---DGEADVFVHIRSVEKAGYTSLAEGARISFER-KTGS 56

Query: 62 NGKYSAENLKL 72
          +GK SA+NL++
Sbjct: 57 SGKVSADNLRI 67


>gi|257462895|ref|ZP_05627301.1| cold shock protein [Fusobacterium sp. D12]
 gi|317060519|ref|ZP_07925004.1| cold shock protein [Fusobacterium sp. D12]
 gi|313686195|gb|EFS23030.1| cold shock protein [Fusobacterium sp. D12]
          Length = 66

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ VT+D  +     
Sbjct: 2  KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVTFDITEGQKG- 56

Query: 64 KYSAENLKLVP 74
             A N+ +V 
Sbjct: 57 -PQASNIIIVK 66


>gi|26987944|ref|NP_743369.1| cold-shock domain-contain protein [Pseudomonas putida KT2440]
 gi|24982656|gb|AAN66833.1|AE016312_4 cold-shock domain family protein [Pseudomonas putida KT2440]
          Length = 91

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  +  D   
Sbjct: 25 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 79

Query: 64 KYSAENLKLV 73
             AE++  V
Sbjct: 80 -LQAEDVVAV 88


>gi|312961675|ref|ZP_07776173.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
 gi|311283934|gb|EFQ62517.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas
          fluorescens WH6]
          Length = 91

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KGYGF+  +  TE   D+F H SA+   G   L  GQ+V+++ +Q      
Sbjct: 8  GKVKWFNNAKGYGFVNEDRKTE---DLFAHYSAIIMDGYKTLKAGQVVSFEIIQGPKG-- 62

Query: 65 YSAENLKLVPKS 76
            A N+  V   
Sbjct: 63 LHAVNIDAVKAE 74


>gi|268678896|ref|YP_003303327.1| Cold-shock protein DNA-binding protein [Sulfurospirillum
          deleyianum DSM 6946]
 gi|268616927|gb|ACZ11292.1| Cold-shock protein DNA-binding protein [Sulfurospirillum
          deleyianum DSM 6946]
          Length = 71

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61
           G++KW+N +KG+GFI P    + G DVF+H   V   G    +L EGQ VTY+  +   
Sbjct: 5  EGTVKWFNNEKGFGFIQP---NDGGKDVFVHFRQVNRTGYGRVSLAEGQKVTYELGEGPK 61

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 62 G--PQAENVT 69


>gi|224084856|ref|XP_002307424.1| predicted protein [Populus trichocarpa]
 gi|222856873|gb|EEE94420.1| predicted protein [Populus trichocarpa]
          Length = 64

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KG+GFI P+   + G+D+F+H++++ S G   L++GQ V +  V +  +G+
Sbjct: 1  GTVKWFSAQKGFGFIAPD---DGGEDLFVHQTSIQSDGFRTLSDGQPVEFS-VDSGEDGR 56

Query: 65 YSAENL 70
            A ++
Sbjct: 57 TKAVDV 62


>gi|326774945|ref|ZP_08234210.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|326655278|gb|EGE40124.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 67

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  EG    G DVF H S +A+ GL  L EGQ VT+D   +  
Sbjct: 1  MASGTVKWFNAAKGFGFIEQEG---DGPDVFAHFSNIAAQGLVELIEGQKVTFDIAPSRK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|315126396|ref|YP_004068399.1| cold-shock RNA chaperone [Pseudoalteromonas sp. SM9913]
 gi|315014910|gb|ADT68248.1| cold-shock RNA chaperone [Pseudoalteromonas sp. SM9913]
          Length = 72

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  +G      D+F H S +   G   L  GQ VT++  Q   
Sbjct: 1  MACGKVKWFNNAKGFGFIVEDGCEN---DIFAHYSTIVMDGYKTLKAGQDVTFELQQGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|89053585|ref|YP_509036.1| cold-shock DNA-binding protein family protein [Jannaschia sp.
          CCS1]
 gi|88863134|gb|ABD54011.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1]
          Length = 68

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI P+   + G DVF+H SAV  AG  +L +   +TY+  +   
Sbjct: 1  MPSGTVKWFNTTKGFGFIAPD---DGGKDVFVHISAVERAGWSDLPDDTKLTYEL-REGR 56

Query: 62 NGKYSAENLKLV 73
          +G+ SA  L  V
Sbjct: 57 DGRESAVELVKV 68


>gi|237745018|ref|ZP_04575499.1| cold shock protein [Fusobacterium sp. 7_1]
 gi|256028777|ref|ZP_05442611.1| cold shock protein [Fusobacterium sp. D11]
 gi|289766681|ref|ZP_06526059.1| cold shock protein [Fusobacterium sp. D11]
 gi|229432247|gb|EEO42459.1| cold shock protein [Fusobacterium sp. 7_1]
 gi|289718236|gb|EFD82248.1| cold shock protein [Fusobacterium sp. D11]
          Length = 66

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ V ++  +     
Sbjct: 2  KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVEFEITEGQKG- 56

Query: 64 KYSAENLKLVP 74
             A N+ ++ 
Sbjct: 57 -PQASNIVIIK 66


>gi|117925208|ref|YP_865825.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
          MC-1]
 gi|117608964|gb|ABK44419.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
          Length = 70

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N DKG+GF+  +       DVF+H SA++  G  +L EGQ V +  V +  
Sbjct: 4  RETGTVKWFNDDKGFGFVARD---NDKGDVFVHHSAISGTGFKSLKEGQRVEFAVV-DGR 59

Query: 62 NGKYSAENLKL 72
           G    + + +
Sbjct: 60 KGPACEDVVAI 70


>gi|219125932|ref|XP_002183223.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405498|gb|EEC45441.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 91

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G +KW++  KG+GFI P+   +   DVF+H++A+ + G  +L +G+ V Y  V+ D+N
Sbjct: 6  QKGVVKWFDTMKGFGFIMPD---DGSTDVFVHQTAIQTEGFRSLADGEAVEY-VVEEDSN 61

Query: 63 GKYSAENLK 71
          G+  A  + 
Sbjct: 62 GRKKAVQVT 70


>gi|299134245|ref|ZP_07027438.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 gi|298590992|gb|EFI51194.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
          Length = 71

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N ++GYGFI P+   + G DVF+H +AV  AGL NLTEGQ +T++   + 
Sbjct: 1  MAMTGVVKFFNAERGYGFIKPD---DGGRDVFVHITAVEKAGLKNLTEGQHITFEVEPDK 57

Query: 61 ANGKYSAENLKL 72
                A +L +
Sbjct: 58 KGKGPKAVDLVV 69


>gi|296532288|ref|ZP_06895027.1| cold shock protein CspA [Roseomonas cervicalis ATCC 49957]
 gi|296267364|gb|EFH13250.1| cold shock protein CspA [Roseomonas cervicalis ATCC 49957]
          Length = 68

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KGYGFI PE   +   DVFLH S V  +GL    EG+ + YD  Q   
Sbjct: 1  MAFGTVKWFNATKGYGFIQPE---DGSKDVFLHVSDVQRSGLREPREGERLQYDLQQGQQ 57

Query: 62 NGKYSAENLK 71
           GK SA NL+
Sbjct: 58 -GKVSATNLR 66


>gi|116749630|ref|YP_846317.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116698694|gb|ABK17882.1| cold-shock DNA-binding protein family [Syntrophobacter
          fumaroxidans MPOB]
          Length = 66

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI     T SG DVF+H S++   G   L+EGQ VT++  +  A
Sbjct: 1  MAEGRVKWFNDQKGYGFIE----TGSGPDVFVHHSSIEGVGFKTLSEGQEVTFEI-EKGA 55

Query: 62 NGKYSAENLKL 72
           G  +    KL
Sbjct: 56 KGPQAVRVKKL 66


>gi|83814144|ref|YP_445684.1| putative cold shock-like protein cspG [Salinibacter ruber DSM
           13855]
 gi|83755538|gb|ABC43651.1| putative cold shock-like protein cspG [Salinibacter ruber DSM
           13855]
          Length = 163

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
           + RG+IKW++ +KG+GFI PE   E G+DVFLH S +  + G  +L EGQ V ++  + +
Sbjct: 95  MQRGTIKWFDTEKGFGFIEPE---EGGEDVFLHVSNITGSTGGDDLREGQTVAFETERTE 151

Query: 61  ANGKYSAENLKLV 73
                SA N   V
Sbjct: 152 KG--LSALNASPV 162


>gi|311695726|gb|ADP98599.1| cold shock, CspA [marine bacterium HP15]
          Length = 68

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT E     G DVF+H S +   G   L EGQ V +   Q     
Sbjct: 5  TGNVKFFNEAKGFGFITRE----GGADVFVHYSNIQGGGFKTLAEGQEVEFTVTQGQKG- 59

Query: 64 KYSAENL 70
             AEN+
Sbjct: 60 -PQAENV 65


>gi|257463996|ref|ZP_05628381.1| cold-shock domain-contain protein [Fusobacterium sp. D12]
 gi|317061518|ref|ZP_07926003.1| cold-shock protein [Fusobacterium sp. D12]
 gi|313687194|gb|EFS24029.1| cold-shock protein [Fusobacterium sp. D12]
          Length = 67

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GFIT E       D F+H S +A  G   L EG+ VT++  +   
Sbjct: 1  MLKGTVKWFNNEKGFGFITGEDMV----DYFVHFSGIAGEGFKTLEEGEAVTFEVSEG-K 55

Query: 62 NGKYSAENLKL 72
           G  + E  K+
Sbjct: 56 KGPMATEVTKV 66


>gi|163751971|ref|ZP_02159182.1| cold-shock DNA-binding domain family protein [Shewanella benthica
          KT99]
 gi|161328129|gb|EDP99296.1| cold-shock DNA-binding domain family protein [Shewanella benthica
          KT99]
          Length = 68

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N DKG+GFITPE   +   D+F+H S +    G   L +GQ V ++  Q  
Sbjct: 1  MAKGTVKWFNADKGFGFITPE---DGSKDLFVHHSEIQAGGGFATLNDGQEVEFEVGQGQ 57

Query: 61 ANG 63
             
Sbjct: 58 KGP 60


>gi|156394304|ref|XP_001636766.1| predicted protein [Nematostella vectensis]
 gi|156223872|gb|EDO44703.1| predicted protein [Nematostella vectensis]
          Length = 671

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            GS+KW+N  KG+GFIT +   + G+DVF+H+SA+ ++G  +L EG+ V      +D  G
Sbjct: 484 TGSVKWFNLIKGFGFITRD---DGGEDVFVHQSAIKASGYRSLEEGEHVQLTISNSD-KG 539

Query: 64  KYS 66
           K +
Sbjct: 540 KVA 542


>gi|319790475|ref|YP_004152108.1| cold-shock DNA-binding domain protein [Thermovibrio ammonificans
          HB-1]
 gi|317114977|gb|ADU97467.1| cold-shock DNA-binding domain protein [Thermovibrio ammonificans
          HB-1]
          Length = 68

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           G++KW++  KGYGFIT     ++G DVF+H + +   G   L EG+ V+++ +++D  
Sbjct: 5  TGTVKWFDSKKGYGFIT----ADNGQDVFVHYTGINGEGFRTLEEGERVSFNVMESDKG 59


>gi|87201154|ref|YP_498411.1| cold-shock DNA-binding protein family protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136835|gb|ABD27577.1| cold-shock DNA-binding protein family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 267

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G +K++N  KG+GFI  E   + G+DVF+H SAV  AGL  L EGQ + ++ V  D  G
Sbjct: 113 KGVVKFFNGQKGFGFIQRE---DGGEDVFVHISAVERAGLEGLAEGQQLEFNLV--DRGG 167

Query: 64  KYSAENLKLV 73
           K SA +L++V
Sbjct: 168 KISAADLQVV 177



 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFIT +   +   D F+H SAV  +GL  L EG  + +D  + D  GK
Sbjct: 201 GTVKFFNAMKGFGFITRD---DGQPDAFVHISAVERSGLRELNEGDKLEFDL-EVDRRGK 256

Query: 65  YSAENL 70
           YSA NL
Sbjct: 257 YSAVNL 262


>gi|117926359|ref|YP_866976.1| cold-shock DNA-binding protein family protein [Magnetococcus sp.
          MC-1]
 gi|117610115|gb|ABK45570.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1]
          Length = 70

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFI  +G      D F+H SA+ + G  +L EGQ V +  V    
Sbjct: 4  RETGTVKWFNDTKGFGFIERDG---GKGDAFVHHSAINATGFKSLAEGQKVEFTVVAGQK 60

Query: 62 N 62
           
Sbjct: 61 G 61


>gi|307823754|ref|ZP_07653982.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307735048|gb|EFO05897.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 71

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
          +  G +KW+N DKG+GFI      +SG DVF+H   + ++ G  +L EGQ V +   Q  
Sbjct: 4  MTTGIVKWFNSDKGFGFIEQ----QSGPDVFVHFQQINNSGGYKSLDEGQKVQFSVAQGQ 59

Query: 61 ANGKYSAENLKLV 73
                AEN+ ++
Sbjct: 60 KG--PQAENVSVI 70


>gi|332284619|ref|YP_004416530.1| cold shock-like protein [Pusillimonas sp. T7-7]
 gi|330428572|gb|AEC19906.1| cold shock-like protein [Pusillimonas sp. T7-7]
          Length = 69

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N DKG+GFI PE     G D+F H S +  +G  +L E Q V++   +      
Sbjct: 6  GIVKWFNNDKGFGFIMPES---GGKDLFAHYSEIQGSGHKSLEENQRVSFVASEGQKG-- 60

Query: 65 YSAENLKLV 73
            A N+++V
Sbjct: 61 PQASNIQVV 69


>gi|88857623|ref|ZP_01132266.1| Cold shock protein [Pseudoalteromonas tunicata D2]
 gi|88820820|gb|EAR30632.1| Cold shock protein [Pseudoalteromonas tunicata D2]
          Length = 69

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H  A+   G   L EGQ V +   Q    G
Sbjct: 6  TGTVKWFNESKGFGFIEQE----NGPDVFAHFRAITGTGFKTLVEGQKVQFKVTQGQ-KG 60

Query: 64 KYSAENLKL 72
            + E + L
Sbjct: 61 PQAEEIVVL 69


>gi|257455421|ref|ZP_05620656.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
 gi|257447383|gb|EEV22391.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
          Length = 70

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G +KW+N  KG+GFI       SG+D+F+H  A+   G  +L +GQ V +  V+   
Sbjct: 4  REQGIVKWFNDSKGFGFIQ----RNSGEDIFVHFRAIQGDGYRSLQDGQKVEFIVVEGQ- 58

Query: 62 NGKYSAENLKL 72
           G  + E  K+
Sbjct: 59 KGLQAEEVTKV 69


>gi|94495604|ref|ZP_01302184.1| cold shock protein [Sphingomonas sp. SKA58]
 gi|94424992|gb|EAT10013.1| cold shock protein [Sphingomonas sp. SKA58]
          Length = 153

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AG+  L EG  + ++  + D  GK
Sbjct: 87  GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMAALNEGDRLDFEL-EVDRRGK 142

Query: 65  YSAENLK 71
           Y+A NL+
Sbjct: 143 YAAVNLQ 149



 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          F+H SAV  AGL  L EGQ + +  V  D  GK SA +L +
Sbjct: 2  FVHISAVEQAGLTGLAEGQPLGFTLV--DRGGKVSATDLVI 40


>gi|134034058|sp|Q1RHK6|CSPA_RICBR RecName: Full=Cold shock-like protein CspA
          Length = 70

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+NP K +GFI  E     G DVF+HRSAV +AGL  L EGQ V +D    D NGK
Sbjct: 7  GKVKWFNPTKNFGFIEQE---NGGKDVFVHRSAVDAAGLAGLNEGQDVIFDL--EDKNGK 61

Query: 65 YSAENLKL 72
           SA NL++
Sbjct: 62 ISAVNLRI 69


>gi|283851981|ref|ZP_06369257.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. FW1012B]
 gi|283572705|gb|EFC20689.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. FW1012B]
          Length = 68

 Score = 89.2 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW++  KGYGFI  EG     DDVF+H S++   G   L EG++V ++ + + 
Sbjct: 1  MGFEGTVKWFSDKKGYGFIMREGQ----DDVFVHYSSIEGEGFRTLREGEIVNFEII-DG 55

Query: 61 ANGKYSAENLK 71
            G  +   +K
Sbjct: 56 ERGPKATNVVK 66


>gi|237739959|ref|ZP_04570440.1| cold shock protein [Fusobacterium sp. 2_1_31]
 gi|237741555|ref|ZP_04572036.1| cold shock protein [Fusobacterium sp. 4_1_13]
 gi|294782948|ref|ZP_06748274.1| hypothetical protein HMPREF0400_00932 [Fusobacterium sp.
          1_1_41FAA]
 gi|229421976|gb|EEO37023.1| cold shock protein [Fusobacterium sp. 2_1_31]
 gi|229429203|gb|EEO39415.1| cold shock protein [Fusobacterium sp. 4_1_13]
 gi|294481589|gb|EFG29364.1| hypothetical protein HMPREF0400_00932 [Fusobacterium sp.
          1_1_41FAA]
          Length = 66

 Score = 89.2 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ V ++  +     
Sbjct: 2  KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVEFEITEGQKG- 56

Query: 64 KYSAENLKLVP 74
             A N+ ++ 
Sbjct: 57 -PQASNIVVIK 66


>gi|195953301|ref|YP_002121591.1| cold-shock DNA-binding domain protein [Hydrogenobaculum sp.
          Y04AAS1]
 gi|195932913|gb|ACG57613.1| cold-shock DNA-binding domain protein [Hydrogenobaculum sp.
          Y04AAS1]
          Length = 71

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 7/75 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV--ASAGLFNLTEGQLVTYDYVQ 58
          M   G++KW++ +KGYGF+T +   ++  DVF+H SA+     G   L +GQ V ++  Q
Sbjct: 1  MGITGTVKWFSKEKGYGFLTRD---DNQGDVFVHFSAIDPNRQGFKTLVQGQRVEFEVDQ 57

Query: 59 NDANGKYSAENLKLV 73
          +    +  A+N++++
Sbjct: 58 DSKGPR--AKNVRVL 70


>gi|77360666|ref|YP_340241.1| cold-shock RNA chaperone [Pseudoalteromonas haloplanktis TAC125]
 gi|76875577|emb|CAI86798.1| nucleic acid-binding domain, cold-shock RNA chaperone
          [Pseudoalteromonas haloplanktis TAC125]
          Length = 72

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  +G      D+F H S +   G   L  GQ VT++  Q   
Sbjct: 1  MACGKVKWFNNAKGFGFIVEDGCEN---DIFAHYSTIVMDGYKTLKAGQDVTFELEQGPK 57

Query: 62 NGKYSAENL 70
               A+N+
Sbjct: 58 G--LHAKNI 64


>gi|169796394|ref|YP_001714187.1| cold shock-like protein [Acinetobacter baumannii AYE]
 gi|213156868|ref|YP_002318913.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          AB0057]
 gi|215483856|ref|YP_002326081.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
 gi|169149321|emb|CAM87205.1| cold shock-like protein [Acinetobacter baumannii AYE]
 gi|213056028|gb|ACJ40930.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          AB0057]
 gi|213988514|gb|ACJ58813.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294]
          Length = 69

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +     G DVF H   ++S+G   L EGQ V+++  Q      
Sbjct: 7  GTVKWFNETKGFGFIQQDT----GPDVFAHFKEISSSGFKTLYEGQRVSFNIAQGQKG-- 60

Query: 65 YSAENL 70
           +A N+
Sbjct: 61 PTATNI 66


>gi|238765641|ref|ZP_04626525.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
 gi|238696140|gb|EEP88973.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
          Length = 57

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           G +KW+N DKG+GFITP    +   DVF+H SA+ S     L EGQ V +   
Sbjct: 6  TGLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSIE 56


>gi|71725899|gb|AAZ39068.1| cold shock protein [Exiguobacterium antarcticum]
          Length = 67

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 4/49 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G +KW+N +KG+GFI  E    SGDDVF+H SA+ + G  +L EGQ V+
Sbjct: 4  GKVKWFNAEKGFGFIERE----SGDDVFVHFSAIQTDGFKSLDEGQEVS 48


>gi|304391309|ref|ZP_07373253.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
 gi|303296665|gb|EFL91021.1| probable cold shock protein y4ch [Ahrensia sp. R2A130]
          Length = 68

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K++N  KGYGFITP+   + G D+F+H SAV  +GL  L+EG  +T+D   +    
Sbjct: 2  QGHVKFFNAAKGYGFITPD---DGGADIFVHISAVEQSGLTTLSEGSAITFDVEPDKKGK 58

Query: 64 KYSAENLKL 72
             A +LK+
Sbjct: 59 GPKAIDLKV 67


>gi|219119929|ref|XP_002180715.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408188|gb|EEC48123.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 71

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW++  KG+GFI P+   +  +DVF+H+++V S G  +L EG+ V +   ++D  G
Sbjct: 8  NGTVKWFDVKKGFGFIVPD---DGSEDVFVHQTSVHSEGFRSLAEGEPVEFSIKEDD-RG 63

Query: 64 KYSAENLK 71
          + SAE + 
Sbjct: 64 RKSAERVT 71


>gi|116748014|ref|YP_844701.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter
          fumaroxidans MPOB]
 gi|116697078|gb|ABK16266.1| cold-shock DNA-binding protein family [Syntrophobacter
          fumaroxidans MPOB]
          Length = 67

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI  +G      DVF+H SA+  AG  +L EG+ V ++  Q  +
Sbjct: 1  MAEGRVKWFNEKKGYGFIETDGQG----DVFVHYSAIEGAGFRSLNEGEQVRFEVEQG-S 55

Query: 62 NGKYSAENLKL 72
           G  +    ++
Sbjct: 56 KGPQAVRVQRV 66


>gi|120555865|ref|YP_960216.1| cold-shock DNA-binding domain-containing protein [Marinobacter
          aquaeolei VT8]
 gi|120325714|gb|ABM20029.1| cold shock protein E (CspE) [Marinobacter aquaeolei VT8]
          Length = 68

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KG+GFIT E    +G DVF+H S++   G   L EGQ V +   +     
Sbjct: 5  KGNVKFFNEAKGFGFITRE----NGADVFVHYSSIQGGGFKTLAEGQEVEFTVTEGQKG- 59

Query: 64 KYSAENL 70
             AEN+
Sbjct: 60 -PQAENV 65


>gi|169347342|ref|ZP_02866280.1| hypothetical protein CLOSPI_00057 [Clostridium spiroforme DSM
          1552]
 gi|169293959|gb|EDS76092.1| hypothetical protein CLOSPI_00057 [Clostridium spiroforme DSM
          1552]
          Length = 65

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI        G DVF+H S +   G   L EG+LV +D  Q++  G
Sbjct: 2  QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQIEQDGYKTLNEGELVEFDLYQSE-RG 56

Query: 64 KYSAENLKL 72
            +   +K+
Sbjct: 57 MQAKHVVKI 65


>gi|332535445|ref|ZP_08411230.1| cold shock protein CspD [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035128|gb|EGI71641.1| cold shock protein CspD [Pseudoalteromonas haloplanktis ANT/505]
          Length = 72

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  +G      D+F H S +   G   L  GQ VT++  Q   
Sbjct: 1  MACGKVKWFNNAKGFGFIVEDGCEN---DIFAHYSTIVMDGYKTLKAGQDVTFELEQGPK 57

Query: 62 NGKYSAENL 70
               A+N+
Sbjct: 58 G--LHAKNI 64


>gi|326389103|ref|ZP_08210684.1| cold-shock DNA-binding protein family protein [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326206409|gb|EGD57245.1| cold-shock DNA-binding protein family protein [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 164

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K++N  KG+GFI  E   + G+DVF+H SAV  AGL  L EGQ + ++ V  D  G
Sbjct: 10 KGVVKFFNAQKGFGFIQRE---DGGEDVFVHISAVERAGLEGLAEGQQLQFNLV--DRGG 64

Query: 64 KYSAENLKLV 73
          K SA +L++V
Sbjct: 65 KISAADLQVV 74



 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++K++N  KG+GFIT +   +   D F+H SAV  +GL  L EG  + +D  + D  G
Sbjct: 97  TGTVKFFNSMKGFGFITRD---DGQPDAFVHISAVERSGLRELNEGDKLEFDL-EVDRRG 152

Query: 64  KYSAENL 70
           K+SA NL
Sbjct: 153 KHSAVNL 159


>gi|261212918|ref|ZP_05927202.1| cold shock protein CspG [Vibrio sp. RC341]
 gi|262402962|ref|ZP_06079522.1| cold shock transcriptional regulator CspA [Vibrio sp. RC586]
 gi|260837983|gb|EEX64660.1| cold shock protein CspG [Vibrio sp. RC341]
 gi|262350461|gb|EEY99594.1| cold shock transcriptional regulator CspA [Vibrio sp. RC586]
          Length = 70

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFITP+     G DVF+H +++AS G+  L EGQ V +   Q     
Sbjct: 6  TGSVKWFNESKGFGFITPDI---GGSDVFVHFNSIASGGVKTLFEGQKVNFSIEQGSKG- 61

Query: 64 KYSAENL 70
             A N+
Sbjct: 62 -LQAVNV 67


>gi|269836302|ref|YP_003318530.1| cold-shock DNA-binding domain-containing protein [Sphaerobacter
          thermophilus DSM 20745]
 gi|269785565|gb|ACZ37708.1| cold-shock DNA-binding domain protein [Sphaerobacter thermophilus
          DSM 20745]
          Length = 77

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 8/77 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KWY+P+KGYGFI  +   +   D+F+HRSA++ +    L EG  V +D   +  
Sbjct: 1  MTTGTVKWYDPEKGYGFIARD---DGDSDLFVHRSAISGS---ELNEGDRVEFDVTSSPK 54

Query: 62 NGKYSAENLKLVPKSSN 78
            +  AE++++   + N
Sbjct: 55 GPR--AEHVRVTEPNLN 69


>gi|209877068|ref|XP_002139976.1| cold-shock DNA-binding domain-containing protein [Cryptosporidium
          muris RN66]
 gi|209555582|gb|EEA05627.1| cold-shock DNA-binding domain-containing protein [Cryptosporidium
          muris RN66]
          Length = 119

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M H G  KW++  KG+GFITP+   +  +D+F+H+  +   G  +L + + V Y+ V+ D
Sbjct: 1  MPHSGVCKWFDSAKGFGFITPD---DGSEDIFVHQQNIKVEGFRSLGQAERVEYE-VETD 56

Query: 61 ANGKYSAENL 70
            G+  A N+
Sbjct: 57 DKGRRKAVNV 66


>gi|320012738|gb|ADW07588.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
          Length = 67

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  +G    G +VF H S +A+ GL  L EGQ VT+D  Q   
Sbjct: 1  MSSGTVKWFNAAKGFGFIEQDG---DGAEVFAHFSNIAAQGLPELFEGQKVTFDVTQGPK 57

Query: 62 NGKYSAENL 70
               AEN+
Sbjct: 58 G--PMAENI 64


>gi|50955362|ref|YP_062650.1| cold-shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951844|gb|AAT89545.1| cold-shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 72

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)

Query: 7  IKWYNPDKGYGFITPEGSTESGD-------DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +KW+N +KGYGFIT + + + G+       DVF+H SA+   G   L EGQ V ++    
Sbjct: 1  MKWFNAEKGYGFITVDSNVDGGEQNVTVHQDVFVHYSAIDMNGYKVLEEGQQVEFEVGTG 60

Query: 60 DANGKYSAENLKLV 73
                 AE+++ +
Sbjct: 61 SKG--PQAESVRPL 72


>gi|296113754|ref|YP_003627692.1| cold shock-like protein [Moraxella catarrhalis RH4]
 gi|295921448|gb|ADG61799.1| cold shock-like protein [Moraxella catarrhalis RH4]
 gi|326562103|gb|EGE12431.1| cold shock-like protein [Moraxella catarrhalis 7169]
 gi|326564532|gb|EGE14758.1| cold shock-like protein [Moraxella catarrhalis 46P47B1]
 gi|326565716|gb|EGE15879.1| cold shock-like protein [Moraxella catarrhalis 12P80B1]
 gi|326566284|gb|EGE16436.1| cold shock-like protein [Moraxella catarrhalis 103P14B1]
 gi|326567064|gb|EGE17186.1| cold shock-like protein [Moraxella catarrhalis BC1]
 gi|326568328|gb|EGE18408.1| cold shock-like protein [Moraxella catarrhalis BC7]
 gi|326572229|gb|EGE22224.1| cold shock-like protein [Moraxella catarrhalis BC8]
 gi|326574571|gb|EGE24511.1| cold shock-like protein [Moraxella catarrhalis O35E]
 gi|326574827|gb|EGE24757.1| cold shock-like protein [Moraxella catarrhalis 101P30B1]
 gi|326576151|gb|EGE26066.1| cold shock-like protein [Moraxella catarrhalis CO72]
          Length = 70

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI  +     G DVF H SA+  +G   L EGQ V +  +     G 
Sbjct: 7  GTVKWFNESKGFGFIAQD---NGGQDVFAHYSAITGSGFKTLAEGQKVAF-ILGEGKKGP 62

Query: 65 YSAENLKL 72
           + E  K+
Sbjct: 63 QAEEIEKV 70


>gi|229828454|ref|ZP_04454523.1| hypothetical protein GCWU000342_00515 [Shuttleworthia satelles
          DSM 14600]
 gi|229793048|gb|EEP29162.1| hypothetical protein GCWU000342_00515 [Shuttleworthia satelles
          DSM 14600]
          Length = 67

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW++  KGYGFI    S E+G DVF+H S +   G   L EG  V ++   +D 
Sbjct: 1  MAKGTVKWFDDRKGYGFI----SDEAGKDVFVHFSKLNMEGFKTLKEGATVDFEVEDSDK 56

Query: 62 NGKYSAENLKLVP 74
               A ++ +V 
Sbjct: 57 G--PQAIDVTVVE 67


>gi|152979111|ref|YP_001344740.1| cold-shock DNA-binding domain-containing protein [Actinobacillus
          succinogenes 130Z]
 gi|150840834|gb|ABR74805.1| putative cold-shock DNA-binding domain protein [Actinobacillus
          succinogenes 130Z]
          Length = 69

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  EGS E   D+F H S +   G  +L  GQ V ++ +  D 
Sbjct: 1  MEVGVVKWFNNAKGFGFINAEGSDE---DIFAHFSVIEMDGYRSLKAGQKVNFEVIHGDK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|167755599|ref|ZP_02427726.1| hypothetical protein CLORAM_01113 [Clostridium ramosum DSM 1402]
 gi|237734348|ref|ZP_04564829.1| cold shock protein cspC [Mollicutes bacterium D7]
 gi|167704538|gb|EDS19117.1| hypothetical protein CLORAM_01113 [Clostridium ramosum DSM 1402]
 gi|229382578|gb|EEO32669.1| cold shock protein cspC [Coprobacillus sp. D7]
          Length = 65

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI        G DVF+H S +   G   L EG+LV ++  Q+D  G
Sbjct: 2  QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQITQDGYKTLNEGELVEFELYQSD-RG 56

Query: 64 KYSAENLKL 72
            +   +K+
Sbjct: 57 MQAKHVVKI 65


>gi|229528227|ref|ZP_04417618.1| cold-shock protein DNA-binding [Vibrio cholerae 12129(1)]
 gi|229334589|gb|EEO00075.1| cold-shock protein DNA-binding [Vibrio cholerae 12129(1)]
          Length = 72

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFITP+     G DVF+H +++ S G+  L EGQ V +   Q     
Sbjct: 8  TGSVKWFNESKGFGFITPDS---GGSDVFVHFNSITSGGVKTLFEGQKVNFSIEQGSKG- 63

Query: 64 KYSAENL 70
             A N+
Sbjct: 64 -LQAVNV 69


>gi|260914143|ref|ZP_05920616.1| cold shock domain protein CspD [Pasteurella dagmatis ATCC 43325]
 gi|260631776|gb|EEX49954.1| cold shock domain protein CspD [Pasteurella dagmatis ATCC 43325]
          Length = 69

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI+ EGS     D+F H S +   G  +L  GQ V ++ V  D 
Sbjct: 1  MEVGVVKWFNNAKGFGFISAEGSD---ADIFAHYSVIEMEGYRSLKAGQKVQFEVVHGD- 56

Query: 62 NGKYSAENLKLVP 74
           G ++ + + +V 
Sbjct: 57 KGSHATKIVPIVE 69


>gi|296394697|ref|YP_003659581.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rotundus DSM 44985]
 gi|296181844|gb|ADG98750.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
          44985]
          Length = 68

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW+N +KG+GFI PE   +   D+F+H + +  + G   L EGQ V ++  +  
Sbjct: 1  MSLGTVKWFNEEKGFGFIAPE---DGSKDLFVHFTGIVENGGFRTLHEGQRVQFE-AEAG 56

Query: 61 ANGKYSAENLKL 72
            G  +   + +
Sbjct: 57 QRGPQAVSVVAV 68


>gi|223935943|ref|ZP_03627858.1| cold-shock DNA-binding domain protein [bacterium Ellin514]
 gi|223895544|gb|EEF61990.1| cold-shock DNA-binding domain protein [bacterium Ellin514]
          Length = 68

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  KG+GFI  +    SG DVF+H +++  +G   L EG+ V ++ V +D 
Sbjct: 1  MASGKVKWFDNKKGFGFIAQD----SGQDVFVHHTSILGSGFKTLNEGEEVNFEVVSSDK 56

Query: 62 NGKYSAENLKLV 73
            K  A+N++ V
Sbjct: 57 GPK--AQNVQRV 66


>gi|319776304|ref|YP_004138792.1| cold shock protein [Haemophilus influenzae F3047]
 gi|319897065|ref|YP_004135260.1| cold shock protein homolog [Haemophilus influenzae F3031]
 gi|317432569|emb|CBY80929.1| cold shock protein homolog [Haemophilus influenzae F3031]
 gi|317450895|emb|CBY87120.1| cold shock protein homolog [Haemophilus influenzae F3047]
          Length = 72

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI+ EG      D+F H S +   G  +L  GQ V ++ +  D 
Sbjct: 1  MEIGIVKWFNNAKGFGFISAEGVD---ADIFAHYSVIEMDGYRSLKAGQKVQFEVLHGDK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|28898663|ref|NP_798268.1| cold shock transcriptional regulator CspA [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|260364904|ref|ZP_05777475.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          K5030]
 gi|260879696|ref|ZP_05892051.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AN-5034]
 gi|260898831|ref|ZP_05907272.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          Peru-466]
 gi|28806881|dbj|BAC60152.1| cold shock transcriptional regulator CspA [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|308086661|gb|EFO36356.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          Peru-466]
 gi|308093445|gb|EFO43140.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          AN-5034]
 gi|308111634|gb|EFO49174.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus
          K5030]
 gi|328472899|gb|EGF43747.1| cold shock transcriptional regulator CspA [Vibrio
          parahaemolyticus 10329]
          Length = 70

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFI+PE     G+D+F+H  ++ S G   L+EGQ V+Y  V+    G
Sbjct: 6  TGSVKWFNETKGFGFISPE---NGGEDLFVHFQSIVSTGFKTLSEGQKVSY-VVEQGKKG 61

Query: 64 KYSAEN 69
            + E 
Sbjct: 62 LQAGEV 67


>gi|251791888|ref|YP_003006608.1| cold-shock DNA-binding domain-containing protein [Aggregatibacter
          aphrophilus NJ8700]
 gi|247533275|gb|ACS96521.1| cold-shock DNA-binding domain protein [Aggregatibacter
          aphrophilus NJ8700]
          Length = 69

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI P    +   DVF+H S +       L EG  V Y+ VQ+   G
Sbjct: 5  NGTVKWFNSTKGFGFIAP---ADGTKDVFVHFSGIVGNNFRTLNEGDRVAYN-VQDSQRG 60

Query: 64 KYSAEN 69
            + E 
Sbjct: 61 PTAVEV 66


>gi|297580078|ref|ZP_06942005.1| cold-shock DNA-binding domain-containing protein [Vibrio cholerae
          RC385]
 gi|297535724|gb|EFH74558.1| cold-shock DNA-binding domain-containing protein [Vibrio cholerae
          RC385]
          Length = 70

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N +KG+GFITP+     G DVF+H +++AS G+  L EGQ V +   Q     
Sbjct: 6  TGSVKWFNENKGFGFITPDI---GGSDVFVHFNSIASGGVKTLFEGQKVNFSIEQGSKG- 61

Query: 64 KYSAENL 70
             A N+
Sbjct: 62 -LQAVNV 67


>gi|296284922|ref|ZP_06862920.1| cold shock protein [Citromicrobium bathyomarinum JL354]
          Length = 270

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G +K++N  KG+GFI  EG    GDDVF+H SAV  AGL  L EGQ + ++ V  D  G
Sbjct: 103 KGQVKFFNGQKGFGFIQQEG---GGDDVFVHISAVERAGLEGLAEGQELEFNLV--DRGG 157

Query: 64  KYSAENLKLV 73
           K SA++L++V
Sbjct: 158 KISAQDLQVV 167



 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++K++N  KG+GF+  +   +   D F+H SAV  +GL  + EG+   +D  + D  G
Sbjct: 203 TGTVKFFNSMKGFGFLVRD---DGQPDAFVHISAVERSGLSQINEGERYEFDL-EVDRRG 258

Query: 64  KYSAENLKLVPK 75
           KYSA NL  V +
Sbjct: 259 KYSAVNLVPVQE 270


>gi|52425150|ref|YP_088287.1| CspC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307202|gb|AAU37702.1| CspC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 69

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  EGS     D+F H S +   G  +L  GQ V ++ V  + 
Sbjct: 1  MEVGVVKWFNNAKGFGFINAEGSD---ADIFAHYSVIEMDGYRSLKAGQKVNFEVVHGEK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|260753178|ref|YP_003226071.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552541|gb|ACV75487.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 303

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AGL +L EG  ++++  + D  GK
Sbjct: 237 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGLPSLNEGDRLSFEL-EVDRRGK 292

Query: 65  YSAENL 70
           Y+A NL
Sbjct: 293 YAAVNL 298



 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +K++N  KG+GF+  +   + G+DVF+H SAV  AGL  L EGQ +++  V  D  G
Sbjct: 137 TGVVKFFNSQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGG 191

Query: 64  KYSAENLKL 72
           + SA NL +
Sbjct: 192 RVSATNLGI 200


>gi|16273340|ref|NP_439584.1| cold shock-like protein [Haemophilus influenzae Rd KW20]
 gi|68250036|ref|YP_249148.1| cold shock-like protein CspD [Haemophilus influenzae 86-028NP]
 gi|145630737|ref|ZP_01786515.1| cold shock-like protein CspD [Haemophilus influenzae R3021]
 gi|145632798|ref|ZP_01788531.1| cold shock-like protein CspD [Haemophilus influenzae 3655]
 gi|145634990|ref|ZP_01790697.1| cold shock-like protein CspD [Haemophilus influenzae PittAA]
 gi|145636144|ref|ZP_01791814.1| cold shock-like protein CspD [Haemophilus influenzae PittHH]
 gi|145638951|ref|ZP_01794559.1| cold shock-like protein CspD [Haemophilus influenzae PittII]
 gi|145641592|ref|ZP_01797169.1| cold shock-like protein CspD [Haemophilus influenzae R3021]
 gi|148825975|ref|YP_001290728.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          PittEE]
 gi|148826935|ref|YP_001291688.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          PittGG]
 gi|229844090|ref|ZP_04464231.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          6P18H1]
 gi|229846710|ref|ZP_04466817.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          7P49H1]
 gi|260580732|ref|ZP_05848558.1| cold shock domain-containing protein CspD [Haemophilus influenzae
          RdAW]
 gi|260583054|ref|ZP_05850836.1| cold shock domain-containing protein CspD [Haemophilus influenzae
          NT127]
 gi|1169113|sp|P46449|CSPD_HAEIN RecName: Full=Cold shock-like protein CspD
 gi|1574273|gb|AAC23082.1| cold shock-like protein (cspD) [Haemophilus influenzae Rd KW20]
 gi|68058235|gb|AAX88488.1| cold shock-like protein CspD [Haemophilus influenzae 86-028NP]
 gi|144983619|gb|EDJ91079.1| cold shock-like protein CspD [Haemophilus influenzae R3021]
 gi|144986454|gb|EDJ93020.1| cold shock-like protein CspD [Haemophilus influenzae 3655]
 gi|145267856|gb|EDK07853.1| cold shock-like protein CspD [Haemophilus influenzae PittAA]
 gi|145270666|gb|EDK10599.1| cold shock-like protein CspD [Haemophilus influenzae PittHH]
 gi|145271923|gb|EDK11832.1| cold shock-like protein CspD [Haemophilus influenzae PittII]
 gi|145273639|gb|EDK13508.1| cold shock-like protein CspD [Haemophilus influenzae 22.4-21]
 gi|148716135|gb|ABQ98345.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          PittEE]
 gi|148718177|gb|ABQ99304.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          PittGG]
 gi|229810199|gb|EEP45918.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          7P49H1]
 gi|229813084|gb|EEP48772.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae
          6P18H1]
 gi|260092549|gb|EEW76486.1| cold shock domain-containing protein CspD [Haemophilus influenzae
          RdAW]
 gi|260093905|gb|EEW77811.1| cold shock domain-containing protein CspD [Haemophilus influenzae
          NT127]
 gi|301170221|emb|CBW29825.1| cold shock protein homolog [Haemophilus influenzae 10810]
 gi|309750920|gb|ADO80904.1| Cold shock protein CspD [Haemophilus influenzae R2866]
 gi|309973115|gb|ADO96316.1| Cold shock protein CspD [Haemophilus influenzae R2846]
          Length = 72

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI+ EG      D+F H S +   G  +L  GQ V ++ + +D 
Sbjct: 1  MEIGIVKWFNNAKGFGFISAEGVD---ADIFAHYSVIEMDGYRSLKAGQKVQFEVLHSDK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|103486965|ref|YP_616526.1| cold-shock DNA-binding domain-containing protein [Sphingopyxis
          alaskensis RB2256]
 gi|98977042|gb|ABF53193.1| cold-shock DNA-binding protein family [Sphingopyxis alaskensis
          RB2256]
          Length = 90

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++K++N DKGYGFI  E   +   D F+H +AV +AG+  L + Q V+Y+  +  
Sbjct: 22 LMAIGTVKFFNNDKGYGFIENE---DGSGDSFVHITAVQAAGMDTLNKEQRVSYEL-ETG 77

Query: 61 ANGKYSAENLK 71
           NGK SA NL+
Sbjct: 78 KNGKVSAINLQ 88


>gi|119503291|ref|ZP_01625375.1| putative Cold-shock protein [marine gamma proteobacterium
          HTCC2080]
 gi|119460937|gb|EAW42028.1| putative Cold-shock protein [marine gamma proteobacterium
          HTCC2080]
          Length = 70

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N  KG+GFIT    T+  +D+F+H  A+   G  +L EG  V +   + D 
Sbjct: 4  RQTGVVKWFNNAKGFGFIT---MTDREEDIFVHFRAIQGDGYRSLNEGDAVEFTLAEGD- 59

Query: 62 NGKYSAENLK 71
           G  + E  K
Sbjct: 60 KGLQAEEVTK 69


>gi|254456290|ref|ZP_05069719.1| 'Cold-shock' DNA-binding domain, putative [Candidatus
          Pelagibacter sp. HTCC7211]
 gi|207083292|gb|EDZ60718.1| 'Cold-shock' DNA-binding domain, putative [Candidatus
          Pelagibacter sp. HTCC7211]
          Length = 68

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+NP KG+GFI  E       DVF+H SAV  AG+  L EGQ +T+D V++ 
Sbjct: 1  MSLQGKVKWFNPTKGFGFIEREDKE---KDVFVHVSAVRDAGMNGLDEGQALTFD-VEDG 56

Query: 61 ANGKYSAENLK 71
            G  SA NLK
Sbjct: 57 PKGP-SAVNLK 66


>gi|313681671|ref|YP_004059409.1| cold-shock DNA-binding protein family [Sulfuricurvum kujiense DSM
          16994]
 gi|313154531|gb|ADR33209.1| cold-shock DNA-binding protein family [Sulfuricurvum kujiense DSM
          16994]
          Length = 72

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61
           G++KW+N +KG+GFI  +     G DVF+H   + S G    +L EGQ VTY   Q + 
Sbjct: 6  NGTVKWFNSEKGFGFIQQD---NGGKDVFVHFRQINSTGYGRVSLDEGQKVTYTVGQGEK 62

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 63 G--PQAENVTAL 72


>gi|262377174|ref|ZP_06070399.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
 gi|262307912|gb|EEY89050.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
          Length = 69

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF H   ++S+G   L EGQ V++  V +   G
Sbjct: 6  TGTVKWFNETKGFGFIQQE----SGPDVFAHFKEISSSGFKTLFEGQRVSFSVV-DGQKG 60

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 61 PNAINIVAL 69


>gi|255318100|ref|ZP_05359344.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
 gi|262379848|ref|ZP_06073004.1| cold shock domain-containing protein CspD [Acinetobacter
          radioresistens SH164]
 gi|255304811|gb|EET83984.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
 gi|262299305|gb|EEY87218.1| cold shock domain-containing protein CspD [Acinetobacter
          radioresistens SH164]
          Length = 69

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    SG DVF H S +AS+G   L EGQ V++   Q    G
Sbjct: 6  NGTVKWFNEAKGFGFIQQE----SGSDVFAHFSEIASSGFKTLFEGQQVSFSVAQGQ-KG 60

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 61 PNAVNIVAL 69


>gi|154508286|ref|ZP_02043928.1| hypothetical protein ACTODO_00782 [Actinomyces odontolyticus ATCC
          17982]
 gi|293194037|ref|ZP_06609919.1| putative cold shock protein [Actinomyces odontolyticus F0309]
 gi|153797920|gb|EDN80340.1| hypothetical protein ACTODO_00782 [Actinomyces odontolyticus ATCC
          17982]
 gi|292819791|gb|EFF78800.1| putative cold shock protein [Actinomyces odontolyticus F0309]
          Length = 69

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
          +  G+IKW+N  KG+GFITP+   +   DVF+H S +   +G   L EG+ V Y+ ++  
Sbjct: 1  MATGTIKWFNDAKGFGFITPD---DESGDVFVHYSNIIGQSGRRTLLEGEKVEYEAIEGP 57

Query: 61 ANGKYSAENL 70
                A N+
Sbjct: 58 KG--LQAMNV 65


>gi|15602346|ref|NP_245418.1| CspD [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720739|gb|AAK02565.1| CspD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 69

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI+ EG+     D+F H S +   G  +L  GQ V ++ V  D 
Sbjct: 1  MEVGVVKWFNNAKGFGFISAEGTD---ADIFAHYSVIEMEGYRSLKAGQKVQFEVVHGDK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|329894353|ref|ZP_08270223.1| putative Cold-shock protein [gamma proteobacterium IMCC3088]
 gi|328923149|gb|EGG30472.1| putative Cold-shock protein [gamma proteobacterium IMCC3088]
          Length = 134

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++KW+N  KG+GFI      +SGD++F+H  A+ + G  +L +G  V++     D 
Sbjct: 69  RETGTVKWFNATKGFGFIV----CDSGDEIFVHFRALRNGGRRSLKDGLPVSFVITSGDR 124

Query: 62  NGKYSAENLKLV 73
                A +++++
Sbjct: 125 G--PQASDVEIL 134


>gi|254470060|ref|ZP_05083464.1| cold-shock DNA-binding domain protein [Pseudovibrio sp. JE062]
 gi|211960371|gb|EEA95567.1| cold-shock DNA-binding domain protein [Pseudovibrio sp. JE062]
          Length = 215

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++K++  DKG+GFITP+   E  +DVF+H SAV  +GL  L  GQ ++++   +  
Sbjct: 121 RQSGTVKFFKLDKGFGFITPD---EGENDVFVHISAVERSGLTTLDSGQRISFETEPDRR 177

Query: 62  NGKYSAENLKL 72
                A  L+L
Sbjct: 178 GKGPKAVELRL 188


>gi|194335526|ref|YP_002017320.1| cold-shock DNA-binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308003|gb|ACF42703.1| cold-shock DNA-binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 69

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KGYGFI      + G DVF+H SA+   G   L EGQ V  +  Q     
Sbjct: 6  EGTVKWFNEEKGYGFIEQ----KGGKDVFVHHSAINGTGRKTLVEGQKVMMEVTQGAKG- 60

Query: 64 KYSAENLKLV 73
             AE++  +
Sbjct: 61 -LQAEDVTPL 69


>gi|330877987|gb|EGH12136.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. glycinea
          str. race 4]
          Length = 73

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI+ +    SGDD+F+H  A+   G   L EGQ V +  V N   G
Sbjct: 6  TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVGFS-VMNRDKG 60

Query: 64 KYSAENLKLVPK 75
            + + +  +P+
Sbjct: 61 LQAEDVIAALPR 72


>gi|295115086|emb|CBL35933.1| cold-shock DNA-binding protein family [butyrate-producing
          bacterium SM4/1]
          Length = 76

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++KW+N  +G+GF+  E   E     F+H S +   G   L EGQ VT++  +++
Sbjct: 1  MRVKGTVKWFNARRGFGFVCDEDGLEH----FVHYSQIQMEGFKRLGEGQSVTFEIGEDE 56

Query: 61 ANGKYSAENLKLVPKSS 77
            G+  A  L+++P+  
Sbjct: 57 -KGRSVA--LEVIPEEQ 70


>gi|325121612|gb|ADY81135.1| cold shock-like protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 69

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G++KW+N  KG+GFI  +     G DVF H   ++S+G   L EGQ V+++  Q    
Sbjct: 7  GTVKWFNETKGFGFIQQDT----GPDVFAHFKEISSSGFKTLYEGQRVSFNIAQGQKG 60


>gi|220920391|ref|YP_002495692.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219944997|gb|ACL55389.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 242

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KWY+P KG+GF++     + G DVF+HRSA+A AGL +L EGQ VT D V+     +
Sbjct: 178 GTVKWYDPAKGFGFVSV---KDGGKDVFVHRSALARAGLDSLAEGQQVTMDVVEGQKGRE 234

Query: 65  YSAENL 70
             + ++
Sbjct: 235 AQSISV 240



 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N +KG+GF+      +   D FLH  AV +AG  +L  G  +T    Q       
Sbjct: 67  TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHTDLLPGTRLTVQTAQGQKG--P 121

Query: 66  SAENLKLVPKSS 77
              N+  V  S+
Sbjct: 122 QVTNITSVDTST 133


>gi|255319459|ref|ZP_05360673.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
 gi|262378517|ref|ZP_06071674.1| cold shock domain-containing protein CspD [Acinetobacter
          radioresistens SH164]
 gi|255303399|gb|EET82602.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
 gi|262299802|gb|EEY87714.1| cold shock domain-containing protein CspD [Acinetobacter
          radioresistens SH164]
          Length = 70

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G +KW+N  KG+GFI        GDDVF+H  A+   G  +L +GQ V +  V+   
Sbjct: 4  REQGVVKWFNDTKGFGFIQ----RNGGDDVFVHFRAIMGEGHRSLRDGQRVEFSVVKGQK 59

Query: 62 NGKYSAENLKLV 73
             + AE ++ +
Sbjct: 60 G--FQAEEVQPL 69


>gi|91203628|emb|CAJ71281.1| similar to Cold shock protein (CspB) [Candidatus Kuenenia
          stuttgartiensis]
          Length = 79

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G +KW++  KG+GFI  +     G DVF+H S +   G   L +G+ V ++ V+  
Sbjct: 11 IMAIGKVKWFDAKKGFGFIEQD----GGGDVFVHYSNIGGDGFKTLEDGEKVEFEVVEGA 66

Query: 61 ANGKYSAEN 69
             +    N
Sbjct: 67 KGLQAQKVN 75


>gi|89897618|ref|YP_521105.1| hypothetical protein DSY4872 [Desulfitobacterium hafniense Y51]
 gi|219670745|ref|YP_002461180.1| cold-shock DNA-binding protein [Desulfitobacterium hafniense
          DCB-2]
 gi|89337066|dbj|BAE86661.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219541005|gb|ACL22744.1| cold-shock DNA-binding domain protein [Desulfitobacterium
          hafniense DCB-2]
          Length = 65

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KGYGFI  +     G D+F+H S++   G   L EGQ V +D VQ      
Sbjct: 3  GKVKWFSKQKGYGFIEGDH----GQDIFVHFSSIMGDGFRTLEEGQGVEFDIVQGPRG-- 56

Query: 65 YSAENLK 71
            A N++
Sbjct: 57 DQASNVQ 63


>gi|329937163|ref|ZP_08286762.1| putative cold shock protein [Streptomyces griseoaurantiacus M045]
 gi|329303444|gb|EGG47330.1| putative cold shock protein [Streptomyces griseoaurantiacus M045]
          Length = 62

 Score = 88.5 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N +KG+GFI  +G    G DVF H S +A++G   L EGQ VT+D  Q        
Sbjct: 1  MKWFNSEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVTFDVTQGQKG--PQ 55

Query: 67 AENL 70
          AEN+
Sbjct: 56 AENI 59


>gi|124514284|gb|EAY55798.1| cold shock protein [Leptospirillum rubarum]
          Length = 52

 Score = 88.5 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 4/55 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          + RG +KW+N +KGYGFI+ E    +G+D+F+H SA+  +G   L EGQLV ++ 
Sbjct: 1  MARGHVKWFNANKGYGFISQE----NGEDIFVHYSAIGGSGFKTLEEGQLVEFEI 51


>gi|71083962|ref|YP_266682.1| cold shock DNA-binding domain-containing protein [Candidatus
          Pelagibacter ubique HTCC1062]
 gi|91762969|ref|ZP_01264934.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
          ubique HTCC1002]
 gi|71063075|gb|AAZ22078.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
          ubique HTCC1062]
 gi|91718771|gb|EAS85421.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
          ubique HTCC1002]
          Length = 68

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+NP KG+GFI  E       DVF+H SAV  AG+  L EGQ +T++ V++ 
Sbjct: 1  MSLQGKVKWFNPTKGFGFIEREDKE---KDVFVHVSAVRDAGMNGLDEGQALTFE-VEDG 56

Query: 61 ANGKYSAENLK 71
            G  SA NLK
Sbjct: 57 PKGP-SAVNLK 66


>gi|77410386|ref|ZP_00786777.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae COH1]
 gi|77171004|gb|EAO74482.1| cold shock protein, CSD family-related protein [Streptococcus
          agalactiae COH1]
          Length = 64

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW+N +KG+GFI+    +E+G DVF H S +   G   L EGQ VT+D     
Sbjct: 1  MTQGTVKWFNSEKGFGFIS----SETGTDVFAHFSEIKVDGFKTLEEGQKVTFDIQDGQ 55


>gi|317405219|gb|EFV85558.1| cold shock-like protein cspA [Achromobacter xylosoxidans C54]
          Length = 67

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K +N +KGYGFITPE     G D+F H S +  +G  +L E Q V++    N  
Sbjct: 1  METGVVKGFNSEKGYGFITPEA---GGKDLFAHFSEIQGSGFKSLEENQRVSF-VTANGP 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPQA 61


>gi|302668966|ref|YP_003832791.1| cold shock domain protein CspD2 [Butyrivibrio proteoclasticus
          B316]
 gi|302397306|gb|ADL36209.1| cold shock domain protein CspD2 [Butyrivibrio proteoclasticus
          B316]
          Length = 72

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KG+GFIT    +E G+DVF+H SA++S G   LT+ + V +D V+ D  G
Sbjct: 7  KGAVKWFDNYKGFGFIT----SEDGEDVFVHYSAISSDGYRKLTQDEKVEFD-VRIDDKG 61

Query: 64 KYSAENLKLV 73
          +  A N++ +
Sbjct: 62 RTVAVNVRKI 71


>gi|315634348|ref|ZP_07889635.1| cold shock domain protein CspD [Aggregatibacter segnis ATCC
          33393]
 gi|315476938|gb|EFU67683.1| cold shock domain protein CspD [Aggregatibacter segnis ATCC
          33393]
          Length = 69

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI+ EGS     D+F H S +   G  +L  GQ V ++ +  D 
Sbjct: 1  MEVGVVKWFNNAKGFGFISAEGSD---TDIFAHYSVIEMDGYRSLKAGQKVQFEVIHGDK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|293608625|ref|ZP_06690928.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829198|gb|EFF87560.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 75

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI      + G D+F H + + + G   L EGQ V +  VQ      
Sbjct: 10 GTVKWFNETKGFGFIA----ADEGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQGKKG-- 63

Query: 65 YSAENLKLVPKS 76
            A N+ ++  S
Sbjct: 64 PQASNIVILQNS 75


>gi|119469529|ref|ZP_01612433.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Alteromonadales bacterium
          TW-7]
 gi|119447064|gb|EAW28334.1| cold shock protein, transcription antiterminator, affects
          expression of rpoS and uspA [Alteromonadales bacterium
          TW-7]
          Length = 67

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N  KG+GFI  E    +G DVF+H SA++ +G   L+EGQ VT+   Q  
Sbjct: 1  MSVSGKVKFFNEAKGFGFIEQE----NGPDVFVHFSAISGSGFRTLSEGQAVTFSIKQGQ 56

Query: 61 ANGKYSAENLK 71
             +  AEN++
Sbjct: 57 KGPE--AENVE 65


>gi|171057778|ref|YP_001790127.1| cold-shock DNA-binding domain-containing protein [Leptothrix
          cholodnii SP-6]
 gi|170775223|gb|ACB33362.1| cold-shock DNA-binding domain protein [Leptothrix cholodnii SP-6]
          Length = 72

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDA 61
            G +KW++  KG+GFITPE   + G D+F H S +    G  +L E Q V ++  Q   
Sbjct: 6  QTGIVKWFDDGKGFGFITPE---DGGKDLFAHHSEIRNGGGFRSLQENQRVEFETKQGPK 62

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 63 G--LQAANIRPL 72


>gi|311107231|ref|YP_003980084.1| cold shock protein CapA [Achromobacter xylosoxidans A8]
 gi|310761920|gb|ADP17369.1| cold shock protein CapA [Achromobacter xylosoxidans A8]
          Length = 69

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N DKG+GFI PE     G D+F H S +   G  +L E Q V++   Q   
Sbjct: 3  IETGIVKWFNNDKGFGFIMPEL---GGKDLFAHFSEIQGDGHKSLEENQRVSFVAGQGQK 59

Query: 62 NG 63
            
Sbjct: 60 GP 61


>gi|300856488|ref|YP_003781472.1| putative cold shock protein CspA [Clostridium ljungdahlii DSM
          13528]
 gi|300436603|gb|ADK16370.1| predicted cold shock protein CspA [Clostridium ljungdahlii DSM
          13528]
          Length = 67

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          +  G++KW+N +KG+GFI   G     +DVF+H +A+ S     NL EGQ V +D V+  
Sbjct: 1  MKIGTVKWFNSEKGFGFIEVPGE----NDVFVHFTAIQSDEPRKNLEEGQKVQFD-VEEG 55

Query: 61 ANGKYSAENLKL 72
            G  +A  +KL
Sbjct: 56 PKGLQAANVVKL 67


>gi|111017122|ref|YP_700094.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|110816652|gb|ABG91936.1| cold shock protein [Rhodococcus jostii RHA1]
          Length = 119

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G+++W+N ++G+GF+ P    +  DD+F+H S +A  G   L EGQ V++   + + 
Sbjct: 53  LRTGTVRWFNAEQGFGFLAP---ADGSDDIFVHVSEIAGDGHRILEEGQRVSFAVCRTET 109

Query: 62  NGKYSAENLKL 72
                A ++++
Sbjct: 110 G--DQARDVRI 118


>gi|729219|sp|P41018|CSPB_BACGO RecName: Full=Cold shock protein CspB
 gi|456240|emb|CAA51791.1| major cold shock protein (CspB) [Sporosarcina globispora]
 gi|740005|prf||2004289B cold shock protein
          Length = 57

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 5/62 (8%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          IKW+N +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ +  G  +
Sbjct: 1  IKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKCLEEGQAVSFEIVEGN-RGPQA 55

Query: 67 AE 68
          A 
Sbjct: 56 AN 57


>gi|293390613|ref|ZP_06634947.1| cold-shock DNA-binding domain protein [Aggregatibacter
          actinomycetemcomitans D7S-1]
 gi|290951147|gb|EFE01266.1| cold-shock DNA-binding domain protein [Aggregatibacter
          actinomycetemcomitans D7S-1]
          Length = 69

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI P        DVF+H S +       L EG  V Y+ VQ+   G
Sbjct: 5  NGTVKWFNSTKGFGFIAP---ANGSKDVFVHFSGIVGNNFRTLNEGDRVAYN-VQDSQRG 60

Query: 64 KYSAEN 69
            + E 
Sbjct: 61 PTAIEV 66


>gi|255020707|ref|ZP_05292768.1| cold-shock protein CspE [Acidithiobacillus caldus ATCC 51756]
 gi|254969861|gb|EET27362.1| cold-shock protein CspE [Acidithiobacillus caldus ATCC 51756]
          Length = 62

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GFITPE   +  +DVF+H SA+   G   L EG+ V+++  +        
Sbjct: 1  MKWFNDSKGFGFITPE---DGKEDVFVHHSAIEGTGFKTLAEGERVSFEVTRGPKG--LQ 55

Query: 67 AENLK 71
          AE ++
Sbjct: 56 AEKVR 60


>gi|282860603|ref|ZP_06269669.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|282564339|gb|EFB69875.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
          Length = 127

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     GDDVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGDDVFVH-SSVLPAGVDALKPGQRVEFGVV-AGQ 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  +   + L P  S
Sbjct: 55 RGDQALSVVVLDPTPS 70


>gi|88860126|ref|ZP_01134765.1| nucleic acid-binding domain, cold-shock RNA chaperone
          [Pseudoalteromonas tunicata D2]
 gi|88818120|gb|EAR27936.1| nucleic acid-binding domain, cold-shock RNA chaperone
          [Pseudoalteromonas tunicata D2]
          Length = 72

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  +G  E   D+F H S +   G   L  GQ VT++  Q   
Sbjct: 1  MACGKVKWFNNAKGFGFIVADGREE---DIFAHFSTIVMDGYKTLKAGQDVTFEL-QAGP 56

Query: 62 NGKYSAENLK 71
           G + A N++
Sbjct: 57 KGLH-ATNIE 65


>gi|261868109|ref|YP_003256031.1| cold shock domain-containing protein CspD [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|293390022|ref|ZP_06634356.1| cold shock domain protein CspD [Aggregatibacter
          actinomycetemcomitans D7S-1]
 gi|261413441|gb|ACX82812.1| cold shock domain protein CspD [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|290950556|gb|EFE00675.1| cold shock domain protein CspD [Aggregatibacter
          actinomycetemcomitans D7S-1]
          Length = 69

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI+ EGS     D+F H S +   G  +L  GQ V ++ +  D 
Sbjct: 1  MEVGVVKWFNNAKGFGFISVEGSD---TDIFAHYSVIEMEGYRSLKAGQKVRFEVIHGD- 56

Query: 62 NGKYSAENLKLVP 74
           G ++ + + +V 
Sbjct: 57 KGSHATKIIPVVE 69


>gi|50085086|ref|YP_046596.1| cold shock-like protein [Acinetobacter sp. ADP1]
 gi|49531062|emb|CAG68774.1| cold shock-like protein [Acinetobacter sp. ADP1]
          Length = 69

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  +    SG DVF H   +AS+G   L EGQ V++  V      
Sbjct: 6  NGTVKWFNEVKGFGFIQQD----SGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKG- 60

Query: 64 KYSAENL 70
            SA N+
Sbjct: 61 -PSAVNI 66


>gi|253581358|ref|ZP_04858584.1| cold-shock protein [Fusobacterium varium ATCC 27725]
 gi|257470862|ref|ZP_05634952.1| cold-shock DNA-binding protein family protein [Fusobacterium
          ulcerans ATCC 49185]
 gi|317065065|ref|ZP_07929550.1| cold shock protein CspB [Fusobacterium ulcerans ATCC 49185]
 gi|251836722|gb|EES65256.1| cold-shock protein [Fusobacterium varium ATCC 27725]
 gi|313690741|gb|EFS27576.1| cold shock protein CspB [Fusobacterium ulcerans ATCC 49185]
          Length = 66

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N +KG+GF+T    +E G D F+H + +   G   L EGQ VT++  +   
Sbjct: 1  MLKGTVKWFNKEKGFGFLT----SEDGADYFVHFTGIVGEGFRTLEEGQEVTFEVSEG-K 55

Query: 62 NGKYSAEN 69
           G  + E 
Sbjct: 56 KGPMAVEV 63


>gi|257887492|ref|ZP_05667145.1| cold-shock domain-contain protein [Enterococcus faecium
          1,141,733]
 gi|257895987|ref|ZP_05675640.1| cold-shock domain-contain protein [Enterococcus faecium Com12]
 gi|293377445|ref|ZP_06623647.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
 gi|257823546|gb|EEV50478.1| cold-shock domain-contain protein [Enterococcus faecium
          1,141,733]
 gi|257832552|gb|EEV58973.1| cold-shock domain-contain protein [Enterococcus faecium Com12]
 gi|292643963|gb|EFF62071.1| major cold shock protein CspA [Enterococcus faecium PC4.1]
          Length = 76

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  KGYGFI+ + + E    +F+H +A+   G   L E Q+V ++ ++ + 
Sbjct: 1  MTTGIVKWFDNKKGYGFISYDDTEE----IFVHFTAIEEEGFKTLEENQVVEFEIIEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGTQAAHVKK 65


>gi|77459814|ref|YP_349321.1| cold-shock DNA-binding protein family protein [Pseudomonas
          fluorescens Pf0-1]
 gi|77383817|gb|ABA75330.1| cold shock-like protein CspD [Pseudomonas fluorescens Pf0-1]
          Length = 93

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 2  VHRGSIKWYNPDKGYGFI---TPEGSTESGD--DVFLHRSAVASAGLFNLTEGQLVTYDY 56
          +  G +KW+N  KG+GFI   + EG  E G   D F H SA+   G   L  GQ+V ++ 
Sbjct: 1  MAVGKVKWFNNAKGFGFINTDSREGKDEDGKEIDFFAHYSAIEMDGYKTLKAGQIVKFEI 60

Query: 57 VQNDAN 62
          VQ    
Sbjct: 61 VQGPKG 66


>gi|297836502|ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297331973|gb|EFH62392.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 299

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G + W+   KGYGFITP+   + G+++F+H+S++ S G  +LT G+ V Y      ++GK
Sbjct: 11 GKVNWFGDGKGYGFITPD---DGGEELFVHQSSIVSDGYRSLTVGESVEYSITLG-SDGK 66

Query: 65 YSAENLK 71
            A N+ 
Sbjct: 67 TKAVNVT 73


>gi|242247545|ref|NP_001156314.1| RNA-binding protein lin-28-like [Acyrthosiphon pisum]
 gi|239792625|dbj|BAH72634.1| ACYPI009849 [Acyrthosiphon pisum]
          Length = 250

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V +G  KW+N  KG+GF+TP+   + G DVF+H+  +   G  +L E + V +   ++D 
Sbjct: 70  VRQGICKWFNSKKGFGFVTPD---DGGKDVFVHQRVIKKDGFRSLRENEHVEFTCHESDK 126

Query: 62  N 62
            
Sbjct: 127 G 127


>gi|192360401|ref|YP_001982239.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107]
 gi|190686566|gb|ACE84244.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107]
          Length = 71

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  +GYGFIT     E  +D+F+H   + + G  +L EGQ V +   + + 
Sbjct: 4  REIGTVKWFNNVRGYGFITR---GEGSEDIFVHYRNIRAEGYRSLAEGQSVEFQLQKGEK 60

Query: 62 NGKYSAENLKLV 73
               AE++ L+
Sbjct: 61 G--LQAEDVILL 70


>gi|262067005|ref|ZP_06026617.1| cold-shock domain protein [Fusobacterium periodonticum ATCC
          33693]
 gi|291379265|gb|EFE86783.1| cold-shock domain protein [Fusobacterium periodonticum ATCC
          33693]
          Length = 65

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          +G++KW+N +KG+GFIT     E G DVF H S +   G   L EGQ V ++  +    
Sbjct: 2  KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVEFEISEGQKR 56


>gi|88703592|ref|ZP_01101308.1| cold-shock domain family protein [Congregibacter litoralis KT71]
 gi|88702306|gb|EAQ99409.1| cold-shock domain family protein [Congregibacter litoralis KT71]
          Length = 70

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N  KG+GFIT E       DVF+H  ++   G   L EG+ V +   +   
Sbjct: 4  RKNGTVKWFNNAKGFGFITGESFD---GDVFVHFRSIQGDGFRTLNEGEEVEFTLTEGPK 60

Query: 62 NGKYSAENLKLV 73
               AE++  +
Sbjct: 61 G--LQAEDVAKL 70


>gi|283856223|ref|YP_162014.2| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775218|gb|AAV88903.2| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 258

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AGL +L EG  ++++  + D  GK
Sbjct: 192 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGLPSLNEGDRLSFEL-EVDRRGK 247

Query: 65  YSAENL 70
           Y+A NL
Sbjct: 248 YAAVNL 253



 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +K++N  KG+GF+  +   + G+DVF+H SAV  AGL  L EGQ +++  V  D  G
Sbjct: 92  TGVVKFFNSQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGG 146

Query: 64  KYSAENLKL 72
           + SA NL +
Sbjct: 147 RVSATNLGI 155


>gi|241760852|ref|ZP_04758941.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374471|gb|EER63932.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 257

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AGL +L EG  ++++  + D  GK
Sbjct: 191 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGLPSLNEGDRLSFEL-EVDRRGK 246

Query: 65  YSAENL 70
           Y+A NL
Sbjct: 247 YAAVNL 252



 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +K++N  KG+GF+  +   + G+DVF+H SAV  AGL  L EGQ +++  V  D  G
Sbjct: 91  TGVVKFFNSQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGG 145

Query: 64  KYSAENLKL 72
           + SA NL +
Sbjct: 146 RVSATNLGI 154


>gi|251792619|ref|YP_003007345.1| cold shock domain-containing protein CspD [Aggregatibacter
          aphrophilus NJ8700]
 gi|247534012|gb|ACS97258.1| cold shock domain protein CspD [Aggregatibacter aphrophilus
          NJ8700]
          Length = 69

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI+ EGS     D+F H S +   G  +L  GQ V ++ +  D 
Sbjct: 1  MEVGVVKWFNNAKGFGFISVEGSN---TDIFAHYSVIEMEGYRSLKAGQKVQFEVIHGD- 56

Query: 62 NGKYSAENLKLVP 74
           G ++ + + +V 
Sbjct: 57 KGSHATKIIPVVE 69


>gi|296283311|ref|ZP_06861309.1| cold shock protein [Citromicrobium bathyomarinum JL354]
          Length = 70

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKG+GFI P+   +   D F+H +AV +AG+  L + Q + Y+  Q  
Sbjct: 1  MAKTGTVKFFNSDKGFGFIQPD---DGSADSFVHITAVQAAGMQGLDKDQRLNYEVEQG- 56

Query: 61 ANGKYSAENLK 71
           NGK SA NL 
Sbjct: 57 RNGKESAVNLS 67


>gi|66359918|ref|XP_627137.1| cold shock RNA binding domain of the OB fold [Cryptosporidium
          parvum Iowa II]
 gi|46228824|gb|EAK89694.1| cold shock RNA binding domain of the OB fold [Cryptosporidium
          parvum Iowa II]
          Length = 135

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G  KW++  KG+GFITP+   +  +D+F+H+  +   G  +L + + V Y+  + D
Sbjct: 9  MPLSGVCKWFDSTKGFGFITPD---DGSEDIFVHQQNIKVEGFRSLAQDERVEYEI-ETD 64

Query: 61 ANGKYSAENLK 71
            G+  A N+ 
Sbjct: 65 DKGRRKAVNVS 75


>gi|319935036|ref|ZP_08009479.1| cold shock protein cspC [Coprobacillus sp. 29_1]
 gi|319810054|gb|EFW06423.1| cold shock protein cspC [Coprobacillus sp. 29_1]
          Length = 65

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N +KG+GFI        G DVF+H S +   G  +L EG++V ++  Q+D  G
Sbjct: 2  QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQIVQDGYKSLNEGEVVEFELYQSD-RG 56

Query: 64 KYSAENLKL 72
            +   +K+
Sbjct: 57 LQAKNVVKV 65


>gi|87122219|ref|ZP_01078102.1| cold-shock protein CspD [Marinomonas sp. MED121]
 gi|86162539|gb|EAQ63821.1| cold-shock protein CspD [Marinomonas sp. MED121]
          Length = 92

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H G++KW+N  KGYGFI  E   E   D+F+H S++   G   L  GQ V++      +
Sbjct: 1  MHHGTVKWFNNAKGYGFIVSESFEE---DLFIHYSSILIDGYKTLKAGQSVSF----KTS 53

Query: 62 NGKYSAENLKLVPK 75
           GK     + ++P+
Sbjct: 54 PGKQGLHAVDIMPE 67


>gi|260583587|ref|ZP_05851335.1| cold shock protein [Granulicatella elegans ATCC 700633]
 gi|260158213|gb|EEW93281.1| cold shock protein [Granulicatella elegans ATCC 700633]
          Length = 70

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW++ +KGYGFI+    T++ +D+F+H + + S G   L EGQ V ++  Q   
Sbjct: 1  MKKGIVKWFSNEKGYGFISV---TDTDEDIFVHFTGIISEGFKTLKEGQRVEFEIAQGAH 57

Query: 62 NGKYSAENLKLV 73
               A ++ +V
Sbjct: 58 G--LQATHVSVV 67


>gi|114704723|ref|ZP_01437631.1| cold shock protein [Fulvimarina pelagi HTCC2506]
 gi|114539508|gb|EAU42628.1| cold shock protein [Fulvimarina pelagi HTCC2506]
          Length = 70

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+IK++N  KG+GF+TPEG      DVFLH SA+  +G+ ++ EG  +T+D   + 
Sbjct: 1  MSQTGTIKFFNESKGFGFVTPEG---GSKDVFLHISALERSGISSVQEGDKITFDTEPDP 57

Query: 61 ANGKYSAENLKL 72
                A N++L
Sbjct: 58 RGKGPKAVNIQL 69


>gi|319403835|emb|CBI77421.1| putative cold shock protein y4cH [Bartonella rochalimae ATCC
          BAA-1498]
 gi|319406844|emb|CBI80479.1| putative cold shock protein y4cH [Bartonella sp. 1-1C]
          Length = 71

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N +KG+GFI P+       D+F+H S V ++GL  L + Q V++D   + 
Sbjct: 1  MAQTGEVKFFNNNKGFGFIKPD---NGSTDIFVHISDVQASGLSGLNDAQKVSFDIEPDR 57

Query: 61 ANGKYSAENLKLV 73
                A N+ ++
Sbjct: 58 RGKGPKAININVM 70


>gi|257878221|ref|ZP_05657874.1| cold-shock domain-contain protein [Enterococcus faecium
          1,230,933]
 gi|257880999|ref|ZP_05660652.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,502]
 gi|257884656|ref|ZP_05664309.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,501]
 gi|257889581|ref|ZP_05669234.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,410]
 gi|257892479|ref|ZP_05672132.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,408]
 gi|258616270|ref|ZP_05714040.1| cold-shock domain-contain protein [Enterococcus faecium DO]
 gi|260559265|ref|ZP_05831451.1| cold-shock domain-containing protein [Enterococcus faecium C68]
 gi|261207798|ref|ZP_05922483.1| cold-shock domain-containing protein [Enterococcus faecium TC 6]
 gi|257812449|gb|EEV41207.1| cold-shock domain-contain protein [Enterococcus faecium
          1,230,933]
 gi|257816657|gb|EEV43985.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,502]
 gi|257820494|gb|EEV47642.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,501]
 gi|257825941|gb|EEV52567.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,410]
 gi|257828858|gb|EEV55465.1| cold-shock domain-contain protein [Enterococcus faecium
          1,231,408]
 gi|260075022|gb|EEW63338.1| cold-shock domain-containing protein [Enterococcus faecium C68]
 gi|260078181|gb|EEW65887.1| cold-shock domain-containing protein [Enterococcus faecium TC 6]
          Length = 77

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  KGYGFI+ + + E    +F+H +A+   G   L E Q+V ++ ++ + 
Sbjct: 1  MTTGIVKWFDNKKGYGFISYDDTEE----IFVHFTAIEEEGFKTLEENQVVEFEIIEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGTQAAHVKK 65


>gi|254393855|ref|ZP_05008963.1| cold shock protein B [Streptomyces clavuligerus ATCC 27064]
 gi|326442535|ref|ZP_08217269.1| putative cold shock protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197707450|gb|EDY53262.1| cold shock protein B [Streptomyces clavuligerus ATCC 27064]
          Length = 127

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V   G+ +L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPDGVDSLKPGQRVEFGVV-AGQ 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  +   + L P  S
Sbjct: 55 RGDQALSVVVLDPTPS 70


>gi|67602636|ref|XP_666494.1| glycogen debranching enzyme [Cryptosporidium hominis TU502]
 gi|54657499|gb|EAL36263.1| glycogen debranching enzyme [Cryptosporidium hominis]
          Length = 127

 Score = 87.7 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G  KW++  KG+GFITP+   +  +D+F+H+  +   G  +L + + V Y+  + D
Sbjct: 1  MPLSGVCKWFDSTKGFGFITPD---DGSEDIFVHQQNIKVEGFRSLAQDERVEYEI-ETD 56

Query: 61 ANGKYSAENLK 71
            G+  A N+ 
Sbjct: 57 DKGRRKAVNVS 67


>gi|330812228|ref|YP_004356690.1| transcriptional regulator, Csd family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327380336|gb|AEA71686.1| putative transcriptional regulator, Csd family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 70

 Score = 87.7 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFIT     + G+++F+H SA+A  G   L + Q V+++  +    G
Sbjct: 6  KGTVKWFNDAKGYGFIT---CGKGGEELFVHYSAIAGEGYKTLKQRQTVSFEVEKGG-KG 61

Query: 64 KYSAEN 69
            +A+ 
Sbjct: 62 MQAAKV 67


>gi|300698107|ref|YP_003748768.1| cold shock/stress protein, member of the Csp-family [Ralstonia
          solanacearum CFBP2957]
 gi|299074831|emb|CBJ54398.1| cold shock/stress protein, member of the Csp-family [Ralstonia
          solanacearum CFBP2957]
          Length = 67

 Score = 87.7 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFITP+     G+D+F H S V   G  +L EGQ V++       
Sbjct: 1  METGIVKWFNDSKGFGFITPDA---GGNDLFAHFSEVQGNGFKSLQEGQKVSF-VSGVGQ 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPVA 61


>gi|325295337|ref|YP_004281851.1| cold-shock DNA-binding domain protein [Desulfurobacterium
          thermolithotrophum DSM 11699]
 gi|325065785|gb|ADY73792.1| cold-shock DNA-binding domain protein [Desulfurobacterium
          thermolithotrophum DSM 11699]
          Length = 68

 Score = 87.7 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KGYGFIT     ++G DVF+H + +A  G   L EG+ V+++  +++    
Sbjct: 6  GTVKWFDSKKGYGFIT----ADNGQDVFVHYTGIAGTGFRTLEEGERVSFNITESNKG-- 59

Query: 65 YSAENLKLV 73
            A +++ V
Sbjct: 60 LKAVDVERV 68


>gi|255073219|ref|XP_002500284.1| cold-shock DNA binding protein [Micromonas sp. RCC299]
 gi|226515546|gb|ACO61542.1| cold-shock DNA binding protein [Micromonas sp. RCC299]
          Length = 122

 Score = 87.7 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP+   +  D++F+H++A+ S G  +L E + V +  ++   +G
Sbjct: 6  TGKVKWFNTQKGFGFITPD---DGSDEIFVHQTAIHSEGFRSLREDEPVEF-VIEKSDDG 61

Query: 64 KYSAENLK 71
          +  A  + 
Sbjct: 62 RTKAIEVT 69


>gi|9957540|gb|AAG09405.1|AF179614_1 cold shock protein B [Yersinia enterocolitica]
          Length = 62

 Score = 87.7 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI+P    +   DVF+H SA+       L EGQ V +   Q     
Sbjct: 6  TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKGP 62


>gi|257898616|ref|ZP_05678269.1| cold-shock domain-contain protein [Enterococcus faecium Com15]
 gi|257836528|gb|EEV61602.1| cold-shock domain-contain protein [Enterococcus faecium Com15]
          Length = 76

 Score = 87.7 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  KGYGFI+ + + E    +F+H +A+   G   L E Q+V ++ ++ + 
Sbjct: 1  MTTGIVKWFDNKKGYGFISYDDTEE----IFVHFTAIEEEGFKTLEENQVVEFEIIEGN- 55

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 56 RGTQAAHVKK 65


>gi|126666188|ref|ZP_01737168.1| Cold-shock DNA-binding protein [Marinobacter sp. ELB17]
 gi|126629510|gb|EBA00128.1| Cold-shock DNA-binding protein [Marinobacter sp. ELB17]
          Length = 196

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
             G++KW+N  KG+GFI  +    SGD++F+H  A+  +G   L +GQLV +  +  D  
Sbjct: 130 EDGTVKWFNVKKGFGFIVRD----SGDEIFVHFRAIRGSGRRVLRQGQLVRFSVIDADKG 185

Query: 63  GKYSAENLKLVPK 75
               A+N+ ++ +
Sbjct: 186 --LQADNVSILSE 196


>gi|323185910|gb|EFZ71267.1| cold shock-like protein cspI [Escherichia coli 1357]
          Length = 62

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+NP+KG+GFITP    +   DVF+H SA+ S     LTE Q V +   +N   G  +
Sbjct: 1  MKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQEVEFGI-ENGPKGPAA 56

Query: 67 AENLKL 72
             + L
Sbjct: 57 VHVVAL 62


>gi|319405275|emb|CBI78889.1| putative cold shock protein y4cH [Bartonella sp. AR 15-3]
          Length = 71

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K++N +KG+GFI P+       D+F+H S V ++GL  L + Q V++D   + 
Sbjct: 1  MAQTGEVKFFNNNKGFGFIKPD---NGSTDIFVHISDVQASGLTGLNDAQKVSFDIEPDR 57

Query: 61 ANGKYSAENLKLV 73
                A N+ ++
Sbjct: 58 RGKGPKAININVM 70


>gi|15892944|ref|NP_360658.1| cold shock-like protein [Rickettsia conorii str. Malish 7]
 gi|34581356|ref|ZP_00142836.1| cold shock-like protein [Rickettsia sibirica 246]
 gi|157828875|ref|YP_001495117.1| cold shock-like protein [Rickettsia rickettsii str. 'Sheila
          Smith']
 gi|165933601|ref|YP_001650390.1| cold shock protein [Rickettsia rickettsii str. Iowa]
 gi|229587023|ref|YP_002845524.1| Cold shock-like protein [Rickettsia africae ESF-5]
 gi|238650987|ref|YP_002916843.1| cold shock protein [Rickettsia peacockii str. Rustic]
 gi|22256739|sp|Q92GV1|CSPA_RICCN RecName: Full=Cold shock-like protein CspA
 gi|15620137|gb|AAL03559.1| cold shock-like protein [Rickettsia conorii str. Malish 7]
 gi|28262741|gb|EAA26245.1| cold shock-like protein [Rickettsia sibirica 246]
 gi|157801356|gb|ABV76609.1| cold shock-like protein [Rickettsia rickettsii str. 'Sheila
          Smith']
 gi|165908688|gb|ABY72984.1| cold shock protein [Rickettsia rickettsii str. Iowa]
 gi|228022073|gb|ACP53781.1| Cold shock-like protein [Rickettsia africae ESF-5]
 gi|238625085|gb|ACR47791.1| cold shock protein [Rickettsia peacockii str. Rustic]
          Length = 70

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  +     G DVF+H+SAV +AGL +L EGQ V +D  +    GK
Sbjct: 7  GKVKWYNSTKNFGFIEQD---NGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEE--KQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAVNLRI 69


>gi|2493765|sp|Q45100|CSPE_BACCE RecName: Full=Cold shock-like protein CspE
 gi|1405478|emb|CAA63611.1| CspE protein [Bacillus cereus]
          Length = 54

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          M   G +KW+N +KG+GFI        G DVF+H SA+   G  +L EGQ V+++  
Sbjct: 1  MTLTGKVKWFNSEKGFGFIE----VADGSDVFVHFSAITGDGFKSLDEGQEVSFEVE 53


>gi|226954179|ref|ZP_03824643.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|294650207|ref|ZP_06727581.1| cold shock family protein [Acinetobacter haemolyticus ATCC 19194]
 gi|226835048|gb|EEH67431.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|292823913|gb|EFF82742.1| cold shock family protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 69

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI      +SG DVF H S + S G   L EGQ V++   Q     
Sbjct: 6  TGTVKWFNETKGFGFIQ----ADSGQDVFAHFSEIQSNGFKVLHEGQRVSFVLGQGKKGP 61

Query: 64 KYSAENL 70
          + ++ ++
Sbjct: 62 QATSISV 68


>gi|29376277|ref|NP_815431.1| cold-shock domain-contain protein [Enterococcus faecalis V583]
 gi|227518915|ref|ZP_03948964.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis TX0104]
 gi|227553533|ref|ZP_03983582.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis HH22]
 gi|229545662|ref|ZP_04434387.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis TX1322]
 gi|229549854|ref|ZP_04438579.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis ATCC 29200]
 gi|255972638|ref|ZP_05423224.1| cold shock protein [Enterococcus faecalis T1]
 gi|256619219|ref|ZP_05476065.1| cold shock protein [Enterococcus faecalis ATCC 4200]
 gi|256762655|ref|ZP_05503235.1| cold shock protein [Enterococcus faecalis T3]
 gi|256853281|ref|ZP_05558651.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
 gi|256959135|ref|ZP_05563306.1| cold shock protein [Enterococcus faecalis DS5]
 gi|256961771|ref|ZP_05565942.1| cold shock protein [Enterococcus faecalis Merz96]
 gi|256964969|ref|ZP_05569140.1| cold shock protein [Enterococcus faecalis HIP11704]
 gi|257079167|ref|ZP_05573528.1| cold shock protein [Enterococcus faecalis JH1]
 gi|257082397|ref|ZP_05576758.1| cold-shock domain-containing protein [Enterococcus faecalis
          E1Sol]
 gi|257085029|ref|ZP_05579390.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|257087012|ref|ZP_05581373.1| cold shock protein [Enterococcus faecalis D6]
 gi|257090040|ref|ZP_05584401.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257416246|ref|ZP_05593240.1| cold shock protein [Enterococcus faecalis AR01/DG]
 gi|257419451|ref|ZP_05596445.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257422457|ref|ZP_05599447.1| cold shock protein [Enterococcus faecalis X98]
 gi|293383477|ref|ZP_06629390.1| cold-shock domain protein [Enterococcus faecalis R712]
 gi|293388868|ref|ZP_06633354.1| cold-shock domain protein [Enterococcus faecalis S613]
 gi|294779384|ref|ZP_06744785.1| major cold shock protein CspA [Enterococcus faecalis PC1.1]
 gi|300860204|ref|ZP_07106291.1| cold shock protein CspD [Enterococcus faecalis TUSoD Ef11]
 gi|307269537|ref|ZP_07550876.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|307273064|ref|ZP_07554310.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|307275813|ref|ZP_07556952.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|307289264|ref|ZP_07569220.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
 gi|307291836|ref|ZP_07571707.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|312901869|ref|ZP_07761134.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
 gi|312903474|ref|ZP_07762654.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|312907694|ref|ZP_07766685.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
 gi|312910312|ref|ZP_07769159.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
 gi|312951656|ref|ZP_07770551.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|29343740|gb|AAO81501.1| cold-shock domain family protein [Enterococcus faecalis V583]
 gi|227073604|gb|EEI11567.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis TX0104]
 gi|227177338|gb|EEI58310.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis HH22]
 gi|229305123|gb|EEN71119.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis ATCC 29200]
 gi|229309230|gb|EEN75217.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecalis TX1322]
 gi|255963656|gb|EET96132.1| cold shock protein [Enterococcus faecalis T1]
 gi|256598746|gb|EEU17922.1| cold shock protein [Enterococcus faecalis ATCC 4200]
 gi|256683906|gb|EEU23601.1| cold shock protein [Enterococcus faecalis T3]
 gi|256711740|gb|EEU26778.1| cold-shock domain-contain protein [Enterococcus faecalis T8]
 gi|256949631|gb|EEU66263.1| cold shock protein [Enterococcus faecalis DS5]
 gi|256952267|gb|EEU68899.1| cold shock protein [Enterococcus faecalis Merz96]
 gi|256955465|gb|EEU72097.1| cold shock protein [Enterococcus faecalis HIP11704]
 gi|256987197|gb|EEU74499.1| cold shock protein [Enterococcus faecalis JH1]
 gi|256990427|gb|EEU77729.1| cold-shock domain-containing protein [Enterococcus faecalis
          E1Sol]
 gi|256993059|gb|EEU80361.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1]
 gi|256995042|gb|EEU82344.1| cold shock protein [Enterococcus faecalis D6]
 gi|256998852|gb|EEU85372.1| cold-shock protein [Enterococcus faecalis CH188]
 gi|257158074|gb|EEU88034.1| cold shock protein [Enterococcus faecalis ARO1/DG]
 gi|257161279|gb|EEU91239.1| cold-shock protein [Enterococcus faecalis T11]
 gi|257164281|gb|EEU94241.1| cold shock protein [Enterococcus faecalis X98]
 gi|291079268|gb|EFE16632.1| cold-shock domain protein [Enterococcus faecalis R712]
 gi|291081793|gb|EFE18756.1| cold-shock domain protein [Enterococcus faecalis S613]
 gi|294453513|gb|EFG21914.1| major cold shock protein CspA [Enterococcus faecalis PC1.1]
 gi|295113106|emb|CBL31743.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76]
 gi|300849243|gb|EFK76993.1| cold shock protein CspD [Enterococcus faecalis TUSoD Ef11]
 gi|306497102|gb|EFM66648.1| major cold shock protein CspA [Enterococcus faecalis TX0411]
 gi|306499973|gb|EFM69334.1| major cold shock protein CspA [Enterococcus faecalis TX0109]
 gi|306507505|gb|EFM76636.1| major cold shock protein CspA [Enterococcus faecalis TX2134]
 gi|306510049|gb|EFM79073.1| major cold shock protein CspA [Enterococcus faecalis TX0855]
 gi|306514157|gb|EFM82733.1| major cold shock protein CspA [Enterococcus faecalis TX4248]
 gi|310626722|gb|EFQ10005.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512]
 gi|310630373|gb|EFQ13656.1| major cold shock protein CspA [Enterococcus faecalis TX0102]
 gi|310633350|gb|EFQ16633.1| major cold shock protein CspA [Enterococcus faecalis TX0635]
 gi|311289585|gb|EFQ68141.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516]
 gi|311291062|gb|EFQ69618.1| major cold shock protein CspA [Enterococcus faecalis TX0470]
 gi|315027882|gb|EFT39814.1| major cold shock protein CspA [Enterococcus faecalis TX2137]
 gi|315029541|gb|EFT41473.1| major cold shock protein CspA [Enterococcus faecalis TX4000]
 gi|315032014|gb|EFT43946.1| major cold shock protein CspA [Enterococcus faecalis TX0017]
 gi|315037138|gb|EFT49070.1| major cold shock protein CspA [Enterococcus faecalis TX0027]
 gi|315144965|gb|EFT88981.1| major cold shock protein CspA [Enterococcus faecalis TX2141]
 gi|315147421|gb|EFT91437.1| major cold shock protein CspA [Enterococcus faecalis TX4244]
 gi|315150754|gb|EFT94770.1| major cold shock protein CspA [Enterococcus faecalis TX0012]
 gi|315152323|gb|EFT96339.1| major cold shock protein CspA [Enterococcus faecalis TX0031]
 gi|315156124|gb|EFU00141.1| major cold shock protein CspA [Enterococcus faecalis TX0043]
 gi|315158234|gb|EFU02251.1| major cold shock protein CspA [Enterococcus faecalis TX0312]
 gi|315162357|gb|EFU06374.1| major cold shock protein CspA [Enterococcus faecalis TX0645]
 gi|315163878|gb|EFU07895.1| major cold shock protein CspA [Enterococcus faecalis TX1302]
 gi|315168876|gb|EFU12893.1| major cold shock protein CspA [Enterococcus faecalis TX1341]
 gi|315169617|gb|EFU13634.1| major cold shock protein CspA [Enterococcus faecalis TX1342]
 gi|315172434|gb|EFU16451.1| major cold shock protein CspA [Enterococcus faecalis TX1346]
 gi|315576063|gb|EFU88254.1| major cold shock protein CspA [Enterococcus faecalis TX0309B]
 gi|315577830|gb|EFU90021.1| major cold shock protein CspA [Enterococcus faecalis TX0630]
 gi|315580638|gb|EFU92829.1| major cold shock protein CspA [Enterococcus faecalis TX0309A]
 gi|323480885|gb|ADX80324.1| cold shock protein CspD [Enterococcus faecalis 62]
 gi|327535290|gb|AEA94124.1| cold shock protein CspA [Enterococcus faecalis OG1RF]
 gi|329571878|gb|EGG53556.1| major cold shock protein CspA [Enterococcus faecalis TX1467]
          Length = 68

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW++  KGYGFI         D++F+H +A+   G  +L E Q V ++ ++ + 
Sbjct: 1  MQKGIVKWFDNRKGYGFIV----YNEEDEIFVHFTAIEGDGFKSLDENQSVEFEIMEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 RGLQAAHVKKI 66


>gi|293603888|ref|ZP_06686303.1| cold shock protein CspA [Achromobacter piechaudii ATCC 43553]
 gi|311104610|ref|YP_003977463.1| cold-shock DNA-binding domain-containing protein 1 [Achromobacter
          xylosoxidans A8]
 gi|292817725|gb|EFF76791.1| cold shock protein CspA [Achromobacter piechaudii ATCC 43553]
 gi|310759299|gb|ADP14748.1| cold-shock DNA-binding domain protein 1 [Achromobacter
          xylosoxidans A8]
          Length = 67

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI PE     G D+F H S + S G   L E Q V+Y      A
Sbjct: 1  METGIVKWFNDAKGFGFIMPE---NGGKDLFAHFSEIVSDGHKVLVENQRVSY-VTAQGA 56

Query: 62 NGKYSAE 68
           G ++ +
Sbjct: 57 KGPHATQ 63


>gi|254459315|ref|ZP_05072736.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales
          bacterium GD 1]
 gi|207083928|gb|EDZ61219.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales
          bacterium GD 1]
          Length = 72

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61
           G++KW+N +KG+GFI  E     G DVF+H   V S G    +L EGQ VT++  + + 
Sbjct: 6  NGTVKWFNSEKGFGFIEQE---NGGKDVFVHFRQVNSNGYDRVSLNEGQKVTFEIGEGEK 62

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 63 G--PQAENVT 70


>gi|51473848|ref|YP_067605.1| cold shock protein CspA [Rickettsia typhi str. Wilmington]
 gi|81826291|sp|Q68W69|CSPA_RICTY RecName: Full=Cold shock-like protein CspA
 gi|51460160|gb|AAU04123.1| cold shock protein CspA [Rickettsia typhi str. Wilmington]
          Length = 70

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  +     G DVF+H+SA+ +AGL +L E Q V +D  +    GK
Sbjct: 7  GKVKWYNSTKNFGFIEQD---NGGKDVFVHKSAIEAAGLHSLKERQEVIFDIEE--KQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAINLRV 69


>gi|88860388|ref|ZP_01135026.1| cold-shock DNA-binding domain family protein [Pseudoalteromonas
          tunicata D2]
 gi|88817586|gb|EAR27403.1| cold-shock DNA-binding domain family protein [Pseudoalteromonas
          tunicata D2]
          Length = 69

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI  E    +G DVF H   +   G   LTEGQ V +   Q    G
Sbjct: 6  TGTVKWFNEAKGFGFIAQE----NGPDVFAHFGNIVGEGFKTLTEGQKVEFIVTQGQ-KG 60

Query: 64 KYSAENLKL 72
            + + + L
Sbjct: 61 PQAEKIVAL 69


>gi|297588480|ref|ZP_06947123.1| CspA family cold shock transcriptional regulator [Finegoldia
          magna ATCC 53516]
 gi|297573853|gb|EFH92574.1| CspA family cold shock transcriptional regulator [Finegoldia
          magna ATCC 53516]
          Length = 67

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          + +G++KW+N  KG+GFI    STE   DVF+H +A+   G    L E Q V +D     
Sbjct: 1  MTKGTVKWFNATKGFGFI----STEDHGDVFVHYTALEDNGEYRKLEENQEVEFDIADGP 56

Query: 61 ANGKYSAENLKLV 73
                A N+K +
Sbjct: 57 RG--LQACNVKKL 67


>gi|33595179|ref|NP_882822.1| cold shock protein [Bordetella parapertussis 12822]
 gi|33599462|ref|NP_887022.1| cold shock protein [Bordetella bronchiseptica RB50]
 gi|33565256|emb|CAE36055.1| cold shock protein [Bordetella parapertussis]
 gi|33567058|emb|CAE30971.1| cold shock protein [Bordetella bronchiseptica RB50]
          Length = 67

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-D 60
          +  G +KW+N +KG+GFI PE     G D+F H S +   G   L E Q V+Y  VQ   
Sbjct: 1  MQTGIVKWFNDEKGFGFIMPE---NGGPDLFAHYSEIQGEGHKALVEQQRVSY--VQGHG 55

Query: 61 ANGKYS 66
            G  +
Sbjct: 56 PKGPMA 61


>gi|317406021|gb|EFV86296.1| cold shock-like protein [Achromobacter xylosoxidans C54]
          Length = 67

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI PE     G D+F H S +   G   L E Q V+Y      A
Sbjct: 1  METGIVKWFNDAKGFGFIMPE---NGGKDLFAHFSEIVGDGHKALVENQRVSY-VTAQGA 56

Query: 62 NGKYSAE 68
           G ++ +
Sbjct: 57 KGPHATQ 63


>gi|183602622|ref|ZP_02963987.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|241190696|ref|YP_002968090.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          animalis subsp. lactis Bl-04]
 gi|241196102|ref|YP_002969657.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          animalis subsp. lactis DSM 10140]
 gi|183218263|gb|EDT88909.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|240249088|gb|ACS46028.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          animalis subsp. lactis Bl-04]
 gi|240250656|gb|ACS47595.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          animalis subsp. lactis DSM 10140]
 gi|289178434|gb|ADC85680.1| Cold shock protein [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793685|gb|ADG33220.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium
          animalis subsp. lactis V9]
          Length = 70

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG++K++N  +GYGFITPE   + G DVF+H S++ + G   L +G LV YD    D 
Sbjct: 1  MPRGTVKFFNVGRGYGFITPE---DGGADVFVHYSSIEAEGFKALRQGDLVEYDSKPTD- 56

Query: 62 NGKYSAENLKL 72
           G+ +   +K+
Sbjct: 57 KGELATRVVKI 67


>gi|302873232|ref|YP_003841865.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307688601|ref|ZP_07631047.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302576089|gb|ADL50101.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans
          743B]
          Length = 65

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KGYGFIT    ++ G ++F+H S ++  G  +L EG  V+++  +   N 
Sbjct: 2  QGNVKWFNGLKGYGFIT----SDDGSEIFVHYSGISGEGYKSLEEGDKVSFETAE--HNN 55

Query: 64 KYSAENLKLV 73
          K  A N+K +
Sbjct: 56 KLQAVNVKKI 65


>gi|157826078|ref|YP_001493798.1| cold shock-like protein [Rickettsia akari str. Hartford]
 gi|157800036|gb|ABV75290.1| cold shock-like protein [Rickettsia akari str. Hartford]
          Length = 70

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  E     G DVF+H+SAV + GL +L EGQ V +D  +    GK
Sbjct: 7  GKVKWYNSTKNFGFIEQE---NGGKDVFVHKSAVEATGLHSLEEGQDVIFDLEE--KQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAVNLRI 69


>gi|253581950|ref|ZP_04859174.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
 gi|251836299|gb|EES64836.1| cold shock protein CspC [Fusobacterium varium ATCC 27725]
          Length = 65

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N DKG+GFIT     E G +VF H S +   G   L E + V Y+  Q     
Sbjct: 2  KGTVKWFNQDKGFGFIT----GEDGKEVFAHYSQIQKDGFKTLEENEEVIYEVTQGQKG- 56

Query: 64 KYSAENLK 71
             A N+K
Sbjct: 57 -PQASNIK 63


>gi|227551399|ref|ZP_03981448.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecium TX1330]
 gi|293570497|ref|ZP_06681552.1| cold-shock protein [Enterococcus faecium E980]
 gi|227179518|gb|EEI60490.1| CspC family cold shock transcriptional regulator [Enterococcus
          faecium TX1330]
 gi|291609443|gb|EFF38710.1| cold-shock protein [Enterococcus faecium E980]
          Length = 79

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  KGYGFI+ + + E    +F+H +A+   G   L E Q+V ++ ++ + 
Sbjct: 4  LTTGIVKWFDNKKGYGFISYDDTEE----IFVHFTAIEEEGFKTLEENQVVEFEIIEGN- 58

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 59 RGTQAAHVKK 68


>gi|103487825|ref|YP_617386.1| cold-shock DNA-binding domain-containing protein [Sphingopyxis
           alaskensis RB2256]
 gi|98977902|gb|ABF54053.1| cold-shock DNA-binding protein family [Sphingopyxis alaskensis
           RB2256]
          Length = 249

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AG+  L EG  V +D   +D  GK
Sbjct: 183 GTVKFFNTTKGFGFIARD---DGQADAFVHISAVQRAGMAGLEEGDRVAFDIEVDD-RGK 238

Query: 65  YSAENLK 71
           ++A NL+
Sbjct: 239 FAAVNLQ 245



 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++K++NP KG+GF+  +   + G+DVF+H SAV  AGL  L  GQ + +  V+   NG
Sbjct: 85  QGTVKFFNPSKGFGFVARD---DGGEDVFVHISAVEQAGLQGLASGQPLAFTLVE--RNG 139

Query: 64  KYSAENLKL 72
           K SA +LK+
Sbjct: 140 KVSAIDLKI 148


>gi|322435626|ref|YP_004217838.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
 gi|321163353|gb|ADW69058.1| cold-shock DNA-binding domain protein [Acidobacterium sp.
          MP5ACTX9]
          Length = 71

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 1  MVH-RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M H +G +KW+N  KG+GF+      E   DVF H S++ + G  +L EG  V YD +  
Sbjct: 1  MAHFKGEVKWFNNAKGFGFL----GREGEPDVFCHYSSIQTDGYKSLKEGDKVEYDVILG 56

Query: 60 DANGKYSAENLKL 72
          D  G  + + +++
Sbjct: 57 D-KGLQADQVVRV 68


>gi|292493470|ref|YP_003528909.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
          Nc4]
 gi|291582065|gb|ADE16522.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
          Nc4]
          Length = 69

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G++KW+N  KGYGFI  E    SG D+F+H  ++   G   L EGQ V++  VQ    
Sbjct: 5  QTGTVKWFNDSKGYGFIQRE----SGGDLFVHYRSIVGQGHRTLKEGQQVSFVEVQGHKG 60

Query: 63 GKYSAENLKLV 73
              A+N+ ++
Sbjct: 61 --PQADNVIVL 69


>gi|71278873|ref|YP_267468.1| cold shock DNA-binding domain-containing protein [Colwellia
          psychrerythraea 34H]
 gi|71144613|gb|AAZ25086.1| cold-shock DNA-binding domain family protein [Colwellia
          psychrerythraea 34H]
          Length = 68

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          + +G +KW+N DKG+GFITPE   +   D+F+H S + S G    L +GQ V Y+  Q  
Sbjct: 1  MSKGIVKWFNSDKGFGFITPE---DGSKDLFVHHSEIQSGGEYATLADGQTVEYEVGQGQ 57

Query: 61 ANG 63
             
Sbjct: 58 KGP 60


>gi|315122408|ref|YP_004062897.1| cold shock protein [Candidatus Liberibacter solanacearum
          CLso-ZC1]
 gi|313495810|gb|ADR52409.1| cold shock protein [Candidatus Liberibacter solanacearum
          CLso-ZC1]
          Length = 74

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/70 (62%), Positives = 55/70 (78%), Gaps = 2/70 (2%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RGSIKWY+ +KGYGFIT   ++    DVFLHRSAV SAGL ++ EGQ V YD+V+N+  G
Sbjct: 7  RGSIKWYDANKGYGFIT--SASAGEKDVFLHRSAVMSAGLPDVREGQEVIYDFVENETTG 64

Query: 64 KYSAENLKLV 73
          K+SAEN+KLV
Sbjct: 65 KFSAENIKLV 74


>gi|111224718|ref|YP_715512.1| major cold shock protein/transcription antiterminator [Frankia
          alni ACN14a]
 gi|111152250|emb|CAJ63981.1| major cold shock protein 7.4, transcription antiterminator of
          hns, ssDNA-binding property [Frankia alni ACN14a]
          Length = 63

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N +KG+GFI+ +G    G DVF+H S++ S G  +L EGQ V++D  Q    G  +
Sbjct: 1  MKWFNAEKGFGFISVDG---GGGDVFVHFSSIVSEGFKSLDEGQRVSFDIEQGQ-KGLQA 56

Query: 67 AEN 69
          A+ 
Sbjct: 57 AKV 59


>gi|67458654|ref|YP_246278.1| cold shock-like protein [Rickettsia felis URRWXCal2]
 gi|75536880|sp|Q4UMU5|CSPA_RICFE RecName: Full=Cold shock-like protein CspA
 gi|67004187|gb|AAY61113.1| Cold shock-like protein [Rickettsia felis URRWXCal2]
          Length = 70

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  E     G DVF+H+SAV +AGL +L EGQ V +D  +    GK
Sbjct: 7  GKVKWYNSTKNFGFIEQE---NGGKDVFVHKSAVDAAGLHSLEEGQYVIFDLEE--KQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAVNLRI 69


>gi|332187878|ref|ZP_08389611.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
 gi|332012039|gb|EGI54111.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
          Length = 284

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++K++N  KG+GFI  +   +   D F+H SAV  AG+ +L EG  + ++  + D  G
Sbjct: 218 TGTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMGSLNEGDRLQFEI-EVDRRG 273

Query: 64  KYSAENLK 71
           KY+A NL+
Sbjct: 274 KYAAVNLQ 281



 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +K++N  KG+GF+  +   + G+DVF+H SAV  AGL  L EGQ + +  V  D  G
Sbjct: 105 TGVVKFFNAQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLGFTLV--DRGG 159

Query: 64  KYSAENLKL 72
           + SA  LK+
Sbjct: 160 RISATELKI 168


>gi|170746594|ref|YP_001752854.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653116|gb|ACB22171.1| cold-shock DNA-binding domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 259

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KWY+P KG+GF++     + G DVF+HRSA++ AGL +L EGQ VT   V+     +
Sbjct: 195 GTVKWYDPAKGFGFVSV---NDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGRE 251

Query: 65  YSAENLK 71
             + N++
Sbjct: 252 AQSINVE 258



 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N +KG+GF+      +   D FLH  AV +AG  +L  G  +T    Q     + 
Sbjct: 70  TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHDDLMPGTRLTVTTAQGQKGPQV 126

Query: 66  SAE 68
           ++ 
Sbjct: 127 TSV 129


>gi|290959486|ref|YP_003490668.1| cold shock protein B [Streptomyces scabiei 87.22]
 gi|260649012|emb|CBG72126.1| putative cold shock protein B [Streptomyces scabiei 87.22]
          Length = 127

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVDTLKPGQKVEFGVVAGQR 55

Query: 62 NGKYSAENLKLVPKS 76
               A ++ ++  +
Sbjct: 56 G--DQALSVTILEPA 68


>gi|239946656|ref|ZP_04698409.1| conserved domain protein [Rickettsia endosymbiont of Ixodes
          scapularis]
 gi|239920932|gb|EER20956.1| conserved domain protein [Rickettsia endosymbiont of Ixodes
          scapularis]
          Length = 70

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  E     G DVF+H+SAV +AGL +L EGQ V +D  +    GK
Sbjct: 7  GKVKWYNSTKNFGFIEQE---NGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEE--KQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAVNLRI 69


>gi|294470716|gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum]
          Length = 295

 Score = 86.9 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G + W++  KGYGFITP+   + GD++F+H+S++ S G  +LT G+ V Y      ++G
Sbjct: 12 TGKVNWFSDGKGYGFITPD---DGGDELFVHQSSIVSDGFRSLTVGESVEYAITLG-SDG 67

Query: 64 KYSAENLK 71
          K  A  + 
Sbjct: 68 KTKAVEVT 75


>gi|254786003|ref|YP_003073432.1| cold-shock DNA-binding domain-containing protein [Teredinibacter
          turnerae T7901]
 gi|237684504|gb|ACR11768.1| cold-shock DNA-binding domain protein [Teredinibacter turnerae
          T7901]
          Length = 72

 Score = 86.9 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 5  GSIKWYNPD--KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G++KW+N    +GYGFIT     E  +D+F+H   +   G  +LTEGQ V ++  + +  
Sbjct: 7  GTVKWFNNASARGYGFITR---GEESEDIFVHYRNIRGEGYRSLTEGQKVEFELQKGEKG 63

Query: 63 GKYSAENLKLV 73
              AE++  V
Sbjct: 64 --LQAEDVSAV 72


>gi|300022389|ref|YP_003755000.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299524210|gb|ADJ22679.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 71

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K+YN  KGYGFI P+     G+DVF+H +AV  +G+  L EG  ++++   + 
Sbjct: 1  MRQTGTVKFYNSQKGYGFIKPDT---GGNDVFVHVTAVERSGIGELNEGMRISFETEPDK 57

Query: 61 ANGKYSAENLK 71
                A +L+
Sbjct: 58 RGKGPKAVDLQ 68


>gi|71278479|ref|YP_267487.1| cold shock DNA-binding domain-containing protein [Colwellia
          psychrerythraea 34H]
 gi|71144219|gb|AAZ24692.1| cold-shock DNA-binding domain family protein [Colwellia
          psychrerythraea 34H]
          Length = 69

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K++N  KG+GFI  E    +G DVF+H SA++  G   L +GQ VT+   Q     
Sbjct: 6  TGKVKFFNETKGFGFIEQE----NGPDVFVHFSAISGDGFRTLADGQAVTFTVKQGQKGP 61

Query: 64 KYSAENL 70
          +  AEN+
Sbjct: 62 E--AENV 66


>gi|289566250|ref|ZP_06446682.1| cold shock protein CspB [Enterococcus faecium D344SRF]
 gi|293553482|ref|ZP_06674110.1| cold-shock protein [Enterococcus faecium E1039]
 gi|293559343|ref|ZP_06675885.1| cold shock protein [Enterococcus faecium E1162]
 gi|293569841|ref|ZP_06680928.1| cold-shock protein [Enterococcus faecium E1071]
 gi|294616589|ref|ZP_06696365.1| cold-shock protein [Enterococcus faecium E1636]
 gi|294617895|ref|ZP_06697504.1| cold shock protein [Enterococcus faecium E1679]
 gi|294622251|ref|ZP_06701305.1| cold shock protein [Enterococcus faecium U0317]
 gi|314939747|ref|ZP_07846969.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133a04]
 gi|314941752|ref|ZP_07848629.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133C]
 gi|314948297|ref|ZP_07851689.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0082]
 gi|314952385|ref|ZP_07855392.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133A]
 gi|314991996|ref|ZP_07857449.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133B]
 gi|314995706|ref|ZP_07860796.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133a01]
 gi|289161957|gb|EFD09825.1| cold shock protein CspB [Enterococcus faecium D344SRF]
 gi|291587589|gb|EFF19466.1| cold-shock protein [Enterococcus faecium E1071]
 gi|291590539|gb|EFF22272.1| cold-shock protein [Enterococcus faecium E1636]
 gi|291595840|gb|EFF27124.1| cold shock protein [Enterococcus faecium E1679]
 gi|291598222|gb|EFF29317.1| cold shock protein [Enterococcus faecium U0317]
 gi|291602359|gb|EFF32583.1| cold-shock protein [Enterococcus faecium E1039]
 gi|291606707|gb|EFF36099.1| cold shock protein [Enterococcus faecium E1162]
 gi|313590097|gb|EFR68942.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133a01]
 gi|313593431|gb|EFR72276.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133B]
 gi|313595502|gb|EFR74347.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133A]
 gi|313599430|gb|EFR78273.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133C]
 gi|313640976|gb|EFS05556.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0133a04]
 gi|313645278|gb|EFS09858.1| putative major cold shock protein CspA [Enterococcus faecium
          TX0082]
          Length = 80

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  KGYGFI+ + + E    +F+H +A+   G   L E Q+V ++ ++ + 
Sbjct: 4  LTTGIVKWFDNKKGYGFISYDDTEE----IFVHFTAIEEEGFKTLEENQVVEFEIIEGN- 58

Query: 62 NGKYSAENLK 71
           G  +A   K
Sbjct: 59 RGTQAAHVKK 68


>gi|320009321|gb|ADW04171.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
          Length = 127

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGADVFVH-SSVLPAGVEALKPGQRVEFGVV-AGQ 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  +   + L P  S
Sbjct: 55 RGDQALSVVILDPTPS 70


>gi|226359632|ref|YP_002777410.1| cold shock protein [Rhodococcus opacus B4]
 gi|226238117|dbj|BAH48465.1| cold shock protein [Rhodococcus opacus B4]
          Length = 81

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G+++W+N D+G+GF+ P    +  DDVF+H S +A  G   L EGQ V++   + D 
Sbjct: 15 LRTGTVRWFNADQGFGFLAP---ADGSDDVFVHVSEIAGDGHRILVEGQRVSFTVCRTDT 71

Query: 62 NGKYSAENLKL 72
               A ++++
Sbjct: 72 G--NQARDVRI 80


>gi|157964818|ref|YP_001499642.1| cold shock-like protein [Rickettsia massiliae MTU5]
 gi|157844594|gb|ABV85095.1| Cold shock-like protein [Rickettsia massiliae MTU5]
          Length = 80

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  E     G DVF+H+SAV +AGL +L EGQ V +D  +    GK
Sbjct: 17 GKVKWYNSTKNFGFIEQE---NGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEE--KQGK 71

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 72 AYAVNLRM 79


>gi|85709247|ref|ZP_01040312.1| Cold shock protein [Erythrobacter sp. NAP1]
 gi|85687957|gb|EAQ27961.1| Cold shock protein [Erythrobacter sp. NAP1]
          Length = 71

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            GS+K++N DKGYGFI P+   +   D F+H SAV +AG+  L + Q + Y+ V+   N
Sbjct: 4  KTGSVKFFNADKGYGFIQPD---DGSADSFVHISAVQAAGMQTLDKEQRLNYE-VETGRN 59

Query: 63 GKYSAENLK 71
          GK SA NL 
Sbjct: 60 GKESAVNLS 68


>gi|257469672|ref|ZP_05633764.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063905|ref|ZP_07928390.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689581|gb|EFS26416.1| cold shock protein [Fusobacterium ulcerans ATCC 49185]
          Length = 65

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N DKG+GFIT     E G +VF H S +   G   L E + V Y+  Q     
Sbjct: 2  KGTVKWFNQDKGFGFIT----GEDGKEVFAHYSQIQKDGFKTLAENEEVVYEVTQGQKG- 56

Query: 64 KYSAENLK 71
             A N+K
Sbjct: 57 -PQASNIK 63


>gi|46203051|ref|ZP_00052170.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
           MS-1]
          Length = 263

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KWY+P KG+GF++     + G DVF+HRSA++ AGL +L EGQ VT + V      
Sbjct: 198 TGTVKWYDPAKGFGFVSV---NDGGKDVFVHRSALSRAGLDSLAEGQQVTLNVVDGQKGR 254

Query: 64  KYSAENL 70
           +  + N+
Sbjct: 255 EAQSINV 261



 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N +KG+GF+      +   D FLH  AV +AG  +L  G  +T    Q     + 
Sbjct: 70  TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 126

Query: 66  SAE 68
           ++ 
Sbjct: 127 TSV 129


>gi|329123451|ref|ZP_08252015.1| cold shock domain protein CspD [Haemophilus aegyptius ATCC 11116]
 gi|327471033|gb|EGF16488.1| cold shock domain protein CspD [Haemophilus aegyptius ATCC 11116]
          Length = 72

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI+ EG      D+F H S +   G  +L  GQ V ++ +  D 
Sbjct: 1  MEIGIVKWFNNAKGFGFISAEGVD---ADIFAHYSVIEMDGYRSLKVGQKVQFEVLHGDK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|321468514|gb|EFX79498.1| hypothetical protein DAPPUDRAFT_52316 [Daphnia pulex]
          Length = 147

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G  KW+N  KG+GFITP+   +   DVF+H+S +   G  NL EG+ V  +    D  
Sbjct: 1  GRCKWFNVTKGWGFITPD---DGSPDVFVHQSVIRMNGFRNLAEGEEVEMETKDADKG 55


>gi|188576172|ref|YP_001913101.1| major cold shock protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520624|gb|ACD58569.1| major cold shock protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 61

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ        
Sbjct: 1  MKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQKG--MQ 54

Query: 67 AENLKLV 73
          A+ ++ V
Sbjct: 55 ADQVQAV 61


>gi|167855568|ref|ZP_02478329.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus
          parasuis 29755]
 gi|219870615|ref|YP_002474990.1| cold shock-like protein CspD [Haemophilus parasuis SH0165]
 gi|167853314|gb|EDS24567.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus
          parasuis 29755]
 gi|219690819|gb|ACL32042.1| cold shock-like protein CspD [Haemophilus parasuis SH0165]
          Length = 69

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +       D+F H S +   G  +L  GQ V +++   D 
Sbjct: 1  MEVGIVKWFNNAKGFGFITSDSYE---GDIFAHFSVIEGEGYRSLKMGQKVHFEFTHGDK 57

Query: 62 NGKYSAENLKLVP 74
               A  +++VP
Sbjct: 58 G----ASAVRIVP 66


>gi|170053777|ref|XP_001862831.1| RNA-binding protein lin-28 [Culex quinquefasciatus]
 gi|167874140|gb|EDS37523.1| RNA-binding protein lin-28 [Culex quinquefasciatus]
          Length = 181

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G  KW+N  KG+GFITP+   + G DVF+H+S +   G  +L + + V ++    D  
Sbjct: 26 GHCKWFNVIKGWGFITPD---DGGQDVFVHQSVLQMDGFRSLGQNEPVEFECKLTDKG 80


>gi|18398546|ref|NP_565427.1| cold-shock DNA-binding family protein [Arabidopsis thaliana]
 gi|14334920|gb|AAK59638.1| putative glycine-rich, zinc-finger DNA-binding protein
          [Arabidopsis thaliana]
 gi|17104541|gb|AAL34159.1| putative glycine-rich, zinc-finger DNA-binding protein
          [Arabidopsis thaliana]
 gi|148726892|dbj|BAF63841.1| cold shock domain protein 3 [Arabidopsis thaliana]
 gi|330251603|gb|AEC06697.1| cold shock domain protein 3 [Arabidopsis thaliana]
          Length = 301

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G + W++  KGYGFITP+   + G+++F+H+S++ S G  +LT G+ V Y+     ++GK
Sbjct: 13 GKVSWFSDGKGYGFITPD---DGGEELFVHQSSIVSDGFRSLTLGESVEYEIALG-SDGK 68

Query: 65 YSAENLK 71
            A  + 
Sbjct: 69 TKAIEVT 75


>gi|283768673|ref|ZP_06341585.1| cold-shock DNA-binding domain protein [Bulleidia extructa W1219]
 gi|283105065|gb|EFC06437.1| cold-shock DNA-binding domain protein [Bulleidia extructa W1219]
          Length = 70

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 8/75 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA---SAGLFNLTEGQLVTYDYVQ 58
          +  G +KW++  KGYGFIT +   + G D+F+H SA+      G   L EGQ V ++  +
Sbjct: 1  MLTGKVKWFDDQKGYGFITSD---DEGKDIFVHFSAIKEGDENGHKTLKEGQAVQFEVEE 57

Query: 59 NDANGKYSAENLKLV 73
           +      A N++ +
Sbjct: 58 GEKG--PHASNVEKL 70


>gi|297568405|ref|YP_003689749.1| cold-shock DNA-binding domain protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296924320|gb|ADH85130.1| cold-shock DNA-binding domain protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 70

 Score = 86.5 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI  +  +    DVF+H   +   G  +L +GQ V++  V+     
Sbjct: 6  NGRVKWFNAPKGFGFIERDNDS----DVFVHYRGIRGEGYRSLQDGQSVSFAVVETPKG- 60

Query: 64 KYSAENLKLV 73
             AE+++++
Sbjct: 61 -LQAEDVEVI 69


>gi|307107809|gb|EFN56051.1| hypothetical protein CHLNCDRAFT_145510 [Chlorella variabilis]
          Length = 139

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 9/68 (13%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW     GYGFITP+     G+D+F+H++A+ S G  +L EG+ V + +V+   +G
Sbjct: 7  TGTVKW-----GYGFITPDS---GGEDLFVHQTAIVSEGFRSLREGEPVEF-FVETSDDG 57

Query: 64 KYSAENLK 71
          +  A N+ 
Sbjct: 58 RQKAVNVT 65


>gi|21222717|ref|NP_628496.1| cold shock protein B [Streptomyces coelicolor A3(2)]
 gi|256786208|ref|ZP_05524639.1| cold shock protein B [Streptomyces lividans TK24]
 gi|289770100|ref|ZP_06529478.1| cold shock protein B [Streptomyces lividans TK24]
 gi|8249978|emb|CAB93399.1| cold shock protein B [Streptomyces coelicolor A3(2)]
 gi|289700299|gb|EFD67728.1| cold shock protein B [Streptomyces lividans TK24]
          Length = 127

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+ +L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVESLKPGQRVEFGVVAGQR 55

Query: 62 NGKYSAENLKLVPKS 76
               A +L L+  +
Sbjct: 56 G--DQALSLALLDPA 68


>gi|163783680|ref|ZP_02178668.1| cold shock protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881085|gb|EDP74601.1| cold shock protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 65

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW++ DKGYGFIT +   ++  DVF+H +A+   G   L +GQ V ++  ++    +  
Sbjct: 1  VKWFSKDKGYGFITRD---DNEGDVFVHFTAIQKEGFKTLEQGQRVEFEIEEDAKGPR-- 55

Query: 67 AENLKLV 73
          A+N+ ++
Sbjct: 56 AKNVVIL 62


>gi|148555809|ref|YP_001263391.1| cold-shock DNA-binding protein family protein [Sphingomonas
           wittichii RW1]
 gi|148500999|gb|ABQ69253.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1]
          Length = 288

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G +K++N  KG+GFI  +   + G+DVF+H SAV  AGL  L EGQ + +  V  D  G
Sbjct: 126 KGVVKFFNGQKGFGFIVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLEFTLV--DRGG 180

Query: 64  KYSAENLKL 72
           + SA +LK+
Sbjct: 181 RVSATDLKI 189



 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AG+ NL EG  + ++  + D  GK
Sbjct: 223 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMTNLNEGDRLEFEL-EVDRRGK 278

Query: 65  YSAENLKLV 73
           Y+A NL  +
Sbjct: 279 YAAVNLTPL 287


>gi|296273539|ref|YP_003656170.1| cold-shock DNA-binding domain-containing protein [Arcobacter
          nitrofigilis DSM 7299]
 gi|296097713|gb|ADG93663.1| cold-shock DNA-binding domain protein [Arcobacter nitrofigilis
          DSM 7299]
          Length = 72

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61
           GS+KW+N +KG+GFI  E     G DVF+H   + S G    +L +GQ VT++  Q D 
Sbjct: 6  NGSVKWFNSEKGFGFIEQE---NGGKDVFVHYRNINSTGYGRVSLEDGQKVTFEVAQGDK 62

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 63 G--LQAENVT 70


>gi|332288226|ref|YP_004419078.1| stationary phase/starvation inducible regulatory protein CspD
          [Gallibacterium anatis UMN179]
 gi|330431122|gb|AEC16181.1| stationary phase/starvation inducible regulatory protein CspD
          [Gallibacterium anatis UMN179]
          Length = 69

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI+ EG      D+F H S +   G  +L  GQ V ++ V  D 
Sbjct: 1  MEIGVVKWFNNAKGFGFISVEGHE---GDIFAHYSVIEMDGYRSLKAGQKVQFEAVHGD- 56

Query: 62 NGKYSAENLKLVP 74
           G ++ + + +V 
Sbjct: 57 KGSHATKIVPIVE 69


>gi|57339760|gb|AAW49867.1| hypothetical protein FTT0391 [synthetic construct]
          Length = 102

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KG+GFITPE     G DVF+H S +       L EGQ VT++  Q    G
Sbjct: 32 QGTVKFFNEQKGFGFITPE---NGGKDVFVHISKLNGE---TLAEGQQVTFE-TQEGRKG 84

Query: 64 KYSAENLKLV 73
             A N++++
Sbjct: 85 PE-AINIEVL 93


>gi|302552283|ref|ZP_07304625.1| cold shock protein B [Streptomyces viridochromogenes DSM 40736]
 gi|302469901|gb|EFL32994.1| cold shock protein B [Streptomyces viridochromogenes DSM 40736]
          Length = 127

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVETLKPGQRVEFGVVAGQR 55

Query: 62 NGKYSAENLKLVPKS 76
               A +L ++  +
Sbjct: 56 G--DQALSLAILDPT 68


>gi|169824501|ref|YP_001692112.1| cold shock protein [Finegoldia magna ATCC 29328]
 gi|302380494|ref|ZP_07268959.1| cold shock protein CspD [Finegoldia magna ACS-171-V-Col3]
 gi|303233739|ref|ZP_07320393.1| cold shock protein CspD [Finegoldia magna BVS033A4]
 gi|167831306|dbj|BAG08222.1| cold shock protein [Finegoldia magna ATCC 29328]
 gi|302311437|gb|EFK93453.1| cold shock protein CspD [Finegoldia magna ACS-171-V-Col3]
 gi|302495173|gb|EFL54925.1| cold shock protein CspD [Finegoldia magna BVS033A4]
          Length = 67

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          + +G +KW+N  KG+GFI    STE   DVF+H +A+   G    L E Q V ++  +  
Sbjct: 1  MTKGKVKWFNATKGFGFI----STEDQGDVFVHYTAIEDNGEYRKLEENQEVEFEISEGP 56

Query: 61 ANGKYSAENLKLV 73
                A N+K +
Sbjct: 57 KG--LQACNVKKL 67


>gi|153811452|ref|ZP_01964120.1| hypothetical protein RUMOBE_01844 [Ruminococcus obeum ATCC 29174]
 gi|149832579|gb|EDM87663.1| hypothetical protein RUMOBE_01844 [Ruminococcus obeum ATCC 29174]
 gi|291546074|emb|CBL19182.1| cold-shock DNA-binding protein family [Ruminococcus sp. SR1/5]
          Length = 75

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW++  KGYGFIT     E G D F H S +   G   L+ GQ V ++    DANG
Sbjct: 6  QGTVKWFSAQKGYGFIT----GEDGIDYFAHFSEIQMDGYRKLSGGQPVLFEAG-TDANG 60

Query: 64 KYSAENLKLVPKSSN 78
          +  A+N+     ++ 
Sbjct: 61 RSLAKNISPADPNAE 75


>gi|88703593|ref|ZP_01101309.1| cold-shock domain family protein [Congregibacter litoralis KT71]
 gi|88702307|gb|EAQ99410.1| cold-shock domain family protein [Congregibacter litoralis KT71]
          Length = 189

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G++KW+N  KG+GFI  E    +GD++F+H  ++   G  +L +G  V Y  V  D 
Sbjct: 123 AEEGTVKWFNGTKGFGFIIRE----NGDEIFVHHRSIIGEGRRSLRDGAPVRYRVVTTDK 178

Query: 62  NGKYSAENLKLV 73
                AE ++ +
Sbjct: 179 G--PQAEEVEAL 188


>gi|85715709|ref|ZP_01046688.1| cold shock protein [Nitrobacter sp. Nb-311A]
 gi|85697362|gb|EAQ35241.1| cold shock protein [Nitrobacter sp. Nb-311A]
          Length = 62

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 5/66 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  K YGFI P+     G  VF+H SAV  AGL +L EG  V+Y+ V N   GK S
Sbjct: 1  MKWFNGQKSYGFIAPD---NGGKVVFVHISAVEKAGLGSLNEGDKVSYEVVVN--RGKES 55

Query: 67 AENLKL 72
          AENL++
Sbjct: 56 AENLRV 61


>gi|323339484|ref|ZP_08079763.1| cold-shock family protein [Lactobacillus ruminis ATCC 25644]
 gi|323093098|gb|EFZ35691.1| cold-shock family protein [Lactobacillus ruminis ATCC 25644]
          Length = 69

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ +++  KGYGFITP+   E  +DVF+H SA+  +G   L EGQ V +  V+   
Sbjct: 1  MLKGTVHFFDKKKGYGFITPD---EGNEDVFVHFSALVGSGFKTLEEGQRVEFCEVEGKK 57

Query: 62 NGKYSAENLKLV 73
          +  + A  + ++
Sbjct: 58 S--FQAAMVTVI 67


>gi|167041377|gb|ABZ06130.1| putative cold-shock DNA-binding domain protein [uncultured marine
           microorganism HF4000_005K23]
          Length = 445

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +KW+N  KGYGFI  EG      D+F+H SAV +AGL  L EG+ +T++   ++   
Sbjct: 368 NGEVKWFNGAKGYGFIKREGEE---KDIFVHSSAVQNAGLKYLKEGEQLTFEVEYSNKG- 423

Query: 64  KYSAENLK 71
             SA NL+
Sbjct: 424 -PSAINLQ 430


>gi|163802257|ref|ZP_02196152.1| transcription elongation factor GreB [Vibrio sp. AND4]
 gi|159174062|gb|EDP58872.1| transcription elongation factor GreB [Vibrio sp. AND4]
          Length = 69

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI+ E    SGDD+F+H  ++   G   L EG+ V++         
Sbjct: 6  TGTVKWFNEAKGFGFISQE----SGDDLFVHFRSILGDGFKKLVEGEKVSFTVGHGPKG- 60

Query: 64 KYSAENLKLV 73
             AEN+  +
Sbjct: 61 -LQAENVTAL 69


>gi|330813537|ref|YP_004357776.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
          sp. IMCC9063]
 gi|327486632|gb|AEA81037.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter
          sp. IMCC9063]
          Length = 68

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N  KG+GFI  E   +   DVF+H SAV +AGL  L EG  + +D V++ 
Sbjct: 1  MSLKGKVKWFNEKKGFGFIERE---DGKKDVFVHISAVQAAGLDYLDEGSSINFD-VEDG 56

Query: 61 ANGKYSAENLK 71
            G  SA NLK
Sbjct: 57 PKGP-SAVNLK 66


>gi|170740501|ref|YP_001769156.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168194775|gb|ACA16722.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
          Length = 242

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KWY+P KG+GF++     + G DVF+HRSA+A AGL +L EGQ VT   V+     +
Sbjct: 178 GTVKWYDPAKGFGFVSV---KDGGKDVFVHRSALARAGLDSLAEGQQVTMGVVEGQKGRE 234

Query: 65  YSAENL 70
             +  +
Sbjct: 235 AQSITV 240



 Score = 62.7 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N +KG+GF+      +   D FLH  AV +AG  +L  G  +T    Q       
Sbjct: 65  TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHADLLPGTRLTVQTAQGQKG--P 119

Query: 66  SAENLKLVPKSS 77
              N+  V  S+
Sbjct: 120 QVTNITSVDTST 131


>gi|33591645|ref|NP_879289.1| cold shock protein [Bordetella pertussis Tohama I]
 gi|33571288|emb|CAE44757.1| cold shock protein [Bordetella pertussis Tohama I]
 gi|332381065|gb|AEE65912.1| cold shock protein [Bordetella pertussis CS]
          Length = 67

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI PE     G D+F H S +   G   L E Q V+Y    +  
Sbjct: 1  MQTGIVKWFNDEKGFGFIMPE---NGGPDLFAHYSEIQGEGHKVLVEQQRVSY-VPGHGP 56

Query: 62 NGKYS 66
           G  +
Sbjct: 57 KGPMA 61


>gi|126656639|ref|ZP_01727853.1| cold shock protein [Cyanothece sp. CCY0110]
 gi|126621859|gb|EAZ92567.1| cold shock protein [Cyanothece sp. CCY0110]
          Length = 64

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW++  KGYGFI P    + GDD+F+H S V S    +L EGQ V Y+  Q   
Sbjct: 1  MAQGQVKWFDVQKGYGFIAP---QDGGDDLFVHYSEVQS---KSLEEGQTVEYEVGQGRK 54

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 55 G--PCAVNVR 62


>gi|456238|emb|CAA51842.1| cold shock protein [Bacillus subtilis]
 gi|740007|prf||2004289D cold shock protein
          Length = 57

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N +KG+G I  EG     DDVF+H SA+   G   L E Q V+++ V+ +  G  +
Sbjct: 1  VKWFNSEKGFGLIEVEGQ----DDVFVHFSAIQGEGFKTLEESQAVSFEIVEGN-RGPQA 55

Query: 67 AE 68
          A 
Sbjct: 56 AN 57


>gi|297200512|ref|ZP_06917909.1| cold shock protein B [Streptomyces sviceus ATCC 29083]
 gi|197709638|gb|EDY53672.1| cold shock protein B [Streptomyces sviceus ATCC 29083]
          Length = 127

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVETLKPGQRVEFGVVAGQR 55

Query: 62 NGKYSAENLKLVPKS 76
               A ++ ++  +
Sbjct: 56 G--DQALSVAILDPT 68


>gi|162147665|ref|YP_001602126.1| cold shock-like protein cspE [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786242|emb|CAP55824.1| Cold shock-like protein cspE [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 226

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG +KWYN  KG+GFITPE     G D+F+H SA+  +GL  LTEGQ      VQ    G
Sbjct: 162 RGVVKWYNATKGFGFITPES---GGKDIFVHASALERSGLTGLTEGQTANVQVVQGQ-KG 217

Query: 64  KYSA 67
             +A
Sbjct: 218 PEAA 221



 Score = 62.7 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N +KG+GF+     ++   DVFLH +A+A++G  +++ G  +     Q    G+  
Sbjct: 60  VKWFNSEKGFGFVE---LSDGSGDVFLHANALATSGHDSVSPGTTLVVRIGQG-PKGRQV 115

Query: 67  AENLKLVPKSSN 78
           A  + +   ++ 
Sbjct: 116 ASVVSVDDSTAQ 127


>gi|328952681|ref|YP_004370015.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
          DSM 11109]
 gi|328453005|gb|AEB08834.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans
          DSM 11109]
          Length = 67

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M +RG +K++N  KG+GFI  +     G +VF+H S + S G   L E + V ++  +  
Sbjct: 1  MKYRGKVKFFNESKGWGFIKQD----DGPEVFVHYSNIQSKGFRTLKENEEVEFELSEG- 55

Query: 61 ANGKYSAENLKL 72
          A G  +   +KL
Sbjct: 56 AKGPQAINVVKL 67


>gi|188575644|ref|YP_001912573.1| hypothetical protein PXO_04812 [Xanthomonas oryzae pv. oryzae
          PXO99A]
 gi|188520096|gb|ACD58041.1| conserved domain protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 61

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 6/67 (8%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GFI+ E    +G+DVF+H  A+   G  +L EGQ V++  VQ        
Sbjct: 1  MKWFNDAKGFGFISRE----NGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQKG--LQ 54

Query: 67 AENLKLV 73
          A+ +++V
Sbjct: 55 ADAVQVV 61


>gi|292490283|ref|YP_003525722.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
          Nc4]
 gi|291578878|gb|ADE13335.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus
          Nc4]
          Length = 70

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G++KW+N  KGYGFI  E     G D+F+H  ++   G  +L EGQ V++  V     
Sbjct: 5  ETGTVKWFNDAKGYGFIQRES---GGSDLFVHFRSITGHGHKSLEEGQQVSFIEVPGQKG 61

Query: 63 GKYSAENLKLV 73
              A+ + ++
Sbjct: 62 --PQADQVTVL 70


>gi|257866254|ref|ZP_05645907.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC30]
 gi|257873232|ref|ZP_05652885.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC10]
 gi|257800212|gb|EEV29240.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC30]
 gi|257807396|gb|EEV36218.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC10]
          Length = 66

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KGYGF++     E G D+F+H S++   G  NL EGQ V Y   +N+ 
Sbjct: 1  MQNGTVKWFNSEKGYGFVS----GEDGQDIFVHFSSIVGEGYRNLEEGQSVVYKIGENE- 55

Query: 62 NGKYSAENL 70
           GK +   +
Sbjct: 56 KGKVATNVV 64


>gi|303285238|ref|XP_003061909.1| cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
 gi|226456320|gb|EEH53621.1| cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
          Length = 121

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFITP+   +  +++F+H+SA+ + G  +L E + V Y   ++D +G
Sbjct: 5  TGKVKWFNTQKGFGFITPD---DGSEEIFVHQSAIHAEGFRSLREEEPVEYTVEKSD-DG 60

Query: 64 KYSAENLK 71
          +  A  + 
Sbjct: 61 RAKAVEVT 68


>gi|270158306|ref|ZP_06186963.1| cold shock-like protein CspG [Legionella longbeachae D-4968]
 gi|289163444|ref|YP_003453582.1| DNA-binding transcriptional repressor [Legionella longbeachae
          NSW150]
 gi|269990331|gb|EEZ96585.1| cold shock-like protein CspG [Legionella longbeachae D-4968]
 gi|288856617|emb|CBJ10424.1| DNA-binding transcriptional repressor [Legionella longbeachae
          NSW150]
          Length = 69

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI  E    SG DVF H   + S+G   LTEGQ V +   Q     
Sbjct: 6  NGIVKWFNEAKGFGFIEQE----SGPDVFAHFKEIVSSGFKTLTEGQRVQFVVTQGAKGP 61

Query: 64 KYSAENL 70
          +  +  L
Sbjct: 62 QAQSITL 68


>gi|90419403|ref|ZP_01227313.1| possible cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336340|gb|EAS50081.1| possible cold-shock protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 210

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KWYN DKG+GFI  +     G DVF+H +A+  +GL  L +GQ VT  +VQ +   
Sbjct: 145 TGTVKWYNADKGFGFIGLDDGA--GKDVFVHATALNRSGLTTLADGQKVTVRFVQGNKGP 202



 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDANGK 64
           + W+N  KG+GF+        G + FLH  A+ +AG     +TEG  +T    Q    G 
Sbjct: 51  VMWFNATKGFGFV----KAADGTEAFLHVRALEAAGASADAVTEGTRLTVRIDQGQ-KGM 105

Query: 65  YSAENLKL 72
              E L +
Sbjct: 106 QVTEVLSV 113


>gi|238764623|ref|ZP_04625569.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
 gi|238697213|gb|EEP89984.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638]
          Length = 57

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           G +KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +   
Sbjct: 6  TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSIE 56


>gi|270159744|ref|ZP_06188400.1| cold shock protein CspC [Legionella longbeachae D-4968]
 gi|289165485|ref|YP_003455623.1| DNA-binding transcriptional repressor [Legionella longbeachae
          NSW150]
 gi|269988083|gb|EEZ94338.1| cold shock protein CspC [Legionella longbeachae D-4968]
 gi|288858658|emb|CBJ12553.1| DNA-binding transcriptional repressor [Legionella longbeachae
          NSW150]
          Length = 69

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI  E     G DVF H   +AS+G   LTEGQ V +   Q     
Sbjct: 6  NGVVKWFNETKGFGFIEQEC----GPDVFAHFKEIASSGFRTLTEGQRVKFIVTQGAKG- 60

Query: 64 KYSAENL 70
             A+N+
Sbjct: 61 -LQAQNI 66


>gi|167468427|ref|ZP_02333131.1| major cold shock protein Cspa1 [Yersinia pestis FV-1]
          Length = 66

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          KW++  KG+GFITP    +   DVF+H SA+ S     L EGQ V +   +N A G  + 
Sbjct: 6  KWFDVCKGFGFITP---ADGSLDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKGPAAV 61

Query: 68 ENLKL 72
            + L
Sbjct: 62 NVIAL 66


>gi|165976142|ref|YP_001651735.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 3 str. JL03]
 gi|190150037|ref|YP_001968562.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|303251483|ref|ZP_07337659.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|303252356|ref|ZP_07338522.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 2 str. 4226]
 gi|307245585|ref|ZP_07527671.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|307247704|ref|ZP_07529743.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
 gi|307249938|ref|ZP_07531910.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|307252281|ref|ZP_07534178.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|307254540|ref|ZP_07536375.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|307256748|ref|ZP_07538527.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|307258995|ref|ZP_07540726.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
 gi|307261191|ref|ZP_07542866.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
 gi|307263370|ref|ZP_07544986.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
 gi|165876243|gb|ABY69291.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 3 str. JL03]
 gi|189915168|gb|ACE61420.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|302648815|gb|EFL79005.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 2 str. 4226]
 gi|302649715|gb|EFL79895.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|306853287|gb|EFM85506.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|306855807|gb|EFM87971.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
 gi|306857998|gb|EFM90082.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|306860203|gb|EFM92219.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|306862523|gb|EFM94482.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|306864796|gb|EFM96700.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|306867019|gb|EFM98876.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
 gi|306868922|gb|EFN00724.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
 gi|306871248|gb|EFN02976.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
          Length = 68

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFIT +       D+F H S + S G  +L  GQ V ++ +  + 
Sbjct: 1  MEVGIVKWFNSAKGFGFITSDNVE---GDIFAHFSEIQSEGYRSLKVGQKVQFELINGER 57

Query: 62 NGKYSAENLKLVP 74
              SA  + LV 
Sbjct: 58 G--ASAAKISLVE 68


>gi|302544493|ref|ZP_07296835.1| cold-shock domain family protein [Streptomyces hygroscopicus ATCC
          53653]
 gi|302462111|gb|EFL25204.1| cold-shock domain family protein [Streptomyces himastatinicus
          ATCC 53653]
          Length = 127

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V   G+ +L  GQ V +  V  + 
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPEGVDSLKPGQRVEFGVVAGNR 55

Query: 62 NGKYSAENLKLVPKS 76
               A ++ L+  +
Sbjct: 56 G--DQALSVTLLDPA 68


>gi|294814134|ref|ZP_06772777.1| Cold shock protein B [Streptomyces clavuligerus ATCC 27064]
 gi|294326733|gb|EFG08376.1| Cold shock protein B [Streptomyces clavuligerus ATCC 27064]
          Length = 132

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KW+N +KG+GF++ +     G DVF+H S+V   G+ +L  GQ V +  V    
Sbjct: 6  VPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPDGVDSLKPGQRVEFGVV-AGQ 59

Query: 62 NGKYSAENLKLVPKSS 77
           G  +   + L P  S
Sbjct: 60 RGDQALSVVVLDPTPS 75


>gi|182436969|ref|YP_001824688.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326777583|ref|ZP_08236848.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178465485|dbj|BAG20005.1| putative cold shock protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326657916|gb|EGE42762.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 127

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVEALKPGQRVEFGVV-AGQ 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  +   + L P  S
Sbjct: 55 RGDQALSVVVLDPTPS 70


>gi|296111917|ref|YP_003622299.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc
          kimchii IMSNU 11154]
 gi|295833449|gb|ADG41330.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc
          kimchii IMSNU 11154]
          Length = 74

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K +  ++GYG+ITP+   E G+DVF+H + +   G  +L +G+ VTY  VQ   
Sbjct: 1  MKTGTVKIWQKERGYGYITPD---EGGEDVFVHFNGIDMDGFKSLNQGEKVTYQLVQGYK 57

Query: 62 NGKYSAENLKLVPKSSN 78
          N  Y A  ++ V K ++
Sbjct: 58 N--YQAAQVQPVMKKAS 72


>gi|239943237|ref|ZP_04695174.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|239989696|ref|ZP_04710360.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379]
 gi|291446710|ref|ZP_06586100.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
 gi|291349657|gb|EFE76561.1| cold shock protein [Streptomyces roseosporus NRRL 15998]
          Length = 127

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVDALKPGQRVEFGVV-AGQ 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  +   + L P  S
Sbjct: 55 RGDQALSVVVLDPTPS 70


>gi|319956775|ref|YP_004168038.1| cold-shock DNA-binding protein family [Nitratifractor salsuginis
          DSM 16511]
 gi|319419179|gb|ADV46289.1| cold-shock DNA-binding protein family [Nitratifractor salsuginis
          DSM 16511]
          Length = 72

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS--AGLFNLTEGQLVTYDYVQN 59
          +H G++KW+N +KGYGFI  +     G+DVF+H   V +   G  +L EGQ V+++  + 
Sbjct: 4  LHHGTVKWFNDEKGYGFIQQD---NGGNDVFVHFRQVNNPEGGRVSLYEGQKVSFEIGEG 60

Query: 60 DANGKYSAENLKLV 73
                 AEN+  +
Sbjct: 61 MKG--PQAENVTPL 72


>gi|261868763|ref|YP_003256685.1| cold-shock DNA-binding domain-containing protein [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|261414095|gb|ACX83466.1| cold-shock DNA-binding domain protein [Aggregatibacter
          actinomycetemcomitans D11S-1]
          Length = 69

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI P   T+   DVF+H S +       L EG  V Y+ VQN   G
Sbjct: 5  NGTVKWFNSIKGFGFIAP---TDGSKDVFVHFSGIVGNNFRTLNEGDHVAYN-VQNSQRG 60

Query: 64 KYSAEN 69
            + E 
Sbjct: 61 PTAIEV 66


>gi|157804047|ref|YP_001492596.1| cold shock-like protein [Rickettsia canadensis str. McKiel]
 gi|157785310|gb|ABV73811.1| cold shock-like protein [Rickettsia canadensis str. McKiel]
          Length = 70

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWYN  K +GFI  E     G DVF+H+SAV +AGL++L EGQ V +D  +    GK
Sbjct: 7  GKVKWYNSTKNFGFIEQEH---GGKDVFVHKSAVDAAGLYSLEEGQGVIFDLEE--KQGK 61

Query: 65 YSAENLKL 72
            A NL++
Sbjct: 62 AYAVNLRI 69


>gi|68171539|ref|ZP_00544918.1| Cold-shock protein, DNA-binding [Ehrlichia chaffeensis str.
          Sapulpa]
 gi|88658217|ref|YP_507119.1| CSD family cold shock protein [Ehrlichia chaffeensis str.
          Arkansas]
 gi|67999044|gb|EAM85716.1| Cold-shock protein, DNA-binding [Ehrlichia chaffeensis str.
          Sapulpa]
 gi|88599674|gb|ABD45143.1| cold shock protein, CSD family [Ehrlichia chaffeensis str.
          Arkansas]
          Length = 88

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 9/79 (11%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTE-------SGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          + G +KW++ +KGYGFI  +              D+F+H +A+  + +  L EGQ V Y 
Sbjct: 11 YTGYVKWFSSEKGYGFICKDQGNNKIRNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQ 70

Query: 56 YVQNDANGKYSAENLKLVP 74
             +  NGK+SA NL+L+ 
Sbjct: 71 L--DKNNGKFSAVNLELLE 87


>gi|187478817|ref|YP_786841.1| cold shock protein [Bordetella avium 197N]
 gi|115423403|emb|CAJ49937.1| cold shock protein [Bordetella avium 197N]
          Length = 69

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N +KG+GFI PE     G D+F H S +   G  +L E Q V++        
Sbjct: 4  ETGVVKWFNSEKGFGFIAPES---GGKDLFAHFSEIVGTGFKSLEENQRVSF-VEGMGPK 59

Query: 63 GKYS 66
          G  +
Sbjct: 60 GPCA 63


>gi|229552085|ref|ZP_04440810.1| cold shock protein CspA [Lactobacillus rhamnosus LMS2-1]
 gi|229314518|gb|EEN80491.1| cold shock protein CspA [Lactobacillus rhamnosus LMS2-1]
 gi|328462896|gb|EGF34740.1| cold shock protein [Lactobacillus rhamnosus MTCC 5462]
          Length = 75

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +K +N DKGYGFI  EG      D+F+H SA+  +G  +LT G+ V +  V+   
Sbjct: 1  MMQGRVKNFNVDKGYGFIEAEGQ----PDIFVHFSAINESGFKSLTPGEQVDFVIVEG-P 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGPQAANV 63


>gi|255975690|ref|ZP_05426276.1| cold shock protein [Enterococcus faecalis T2]
 gi|307277908|ref|ZP_07558992.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
 gi|255968562|gb|EET99184.1| cold shock protein [Enterococcus faecalis T2]
 gi|306505305|gb|EFM74491.1| major cold shock protein CspA [Enterococcus faecalis TX0860]
          Length = 68

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW++  KGYGFI         D++F+H +A+   G  +L E Q V ++ ++ + 
Sbjct: 1  MQKGIVKWFDNRKGYGFIV----YNEEDEIFVHFTAIEGDGFKSLDENQFVEFEIMEGN- 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 RGLQAAHVKKI 66


>gi|294508964|ref|YP_003565853.1| Cold-shock DNA-binding domain protein [Bacillus megaterium QM
          B1551]
 gi|294352268|gb|ADE72590.1| Cold-shock DNA-binding domain protein [Bacillus megaterium QM
          B1551]
          Length = 76

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 12/78 (15%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG------LFNLTEGQLVTYD 55
             G++KW+N +KG+GFITPE    +G D+F+H +A+          + +L EGQ VT+ 
Sbjct: 4  RQVGTVKWFNHEKGFGFITPE----NGPDLFVHFTAIERTKGTEGVVIKSLKEGQKVTFV 59

Query: 56 YVQNDANGKYSAENLKLV 73
           V         AE ++++
Sbjct: 60 VVNGQRG--MQAEMVRVL 75


>gi|29830450|ref|NP_825084.1| cold shock protein [Streptomyces avermitilis MA-4680]
 gi|29607562|dbj|BAC71619.1| putative cold shock protein [Streptomyces avermitilis MA-4680]
          Length = 127

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVEALKPGQRVEFGVV-AGQ 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  +   + L P  S
Sbjct: 55 RGDQALSVVLLDPTPS 70


>gi|209542291|ref|YP_002274520.1| cold-shock DNA-binding domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529968|gb|ACI49905.1| cold-shock DNA-binding domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 204

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG +KWYN  KG+GFITPE     G D+F+H SA+  +GL  LTEGQ      VQ    G
Sbjct: 140 RGVVKWYNATKGFGFITPES---GGKDIFVHASALERSGLTGLTEGQTANVQVVQGQ-KG 195

Query: 64  KYSA 67
             +A
Sbjct: 196 PEAA 199



 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N +KG+GF+     ++   DVFLH +A+A++G  +++ G  +     Q    G+  
Sbjct: 38  VKWFNSEKGFGFVE---LSDGSGDVFLHANALATSGHDSVSPGTTLVVRIGQG-PKGRQV 93

Query: 67  AENLKLVPKSSN 78
           A  + +   ++ 
Sbjct: 94  ASVVSVDDSTAQ 105


>gi|323698523|ref|ZP_08110435.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. ND132]
 gi|323458455|gb|EGB14320.1| cold-shock DNA-binding domain protein [Desulfovibrio
          desulfuricans ND132]
          Length = 76

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M H G + W+N  KG+GFIT +     G DVF+H + +   G   L  G+ VT+     +
Sbjct: 1  MRHTGEVTWFNEQKGFGFITGD----DGRDVFVHYTEIVRDGFQTLEPGEKVTFTLADEE 56

Query: 61 ANGKYSAENLKLVPKS 76
             K  A  +++  ++
Sbjct: 57 TGPK--AVEVRIQEEA 70


>gi|307610951|emb|CBX00570.1| hypothetical protein LPW_22881 [Legionella pneumophila 130b]
          Length = 69

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI  E     G DVF H   ++S+G   LTEGQ V +   Q     
Sbjct: 6  NGVVKWFNELKGFGFIEQE----GGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKG- 60

Query: 64 KYSAENLKLV 73
             A+N+  +
Sbjct: 61 -LQAQNITPL 69


>gi|329940599|ref|ZP_08289880.1| cold-shock domain-containing protein [Streptomyces
          griseoaurantiacus M045]
 gi|329300660|gb|EGG44557.1| cold-shock domain-containing protein [Streptomyces
          griseoaurantiacus M045]
          Length = 62

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N +KG+GFI  +G    G DVF H S +A+ G   L EGQ V +D  Q       +
Sbjct: 1  MKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKG--PT 55

Query: 67 AENL 70
          AEN+
Sbjct: 56 AENI 59


>gi|312078159|ref|XP_003141617.1| cold-shock DNA-binding domain-containing protein [Loa loa]
 gi|307763216|gb|EFO22450.1| cold-shock DNA-binding domain-containing protein [Loa loa]
          Length = 199

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 9/78 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH-----RSAVASAGLFNLTEGQLVTYDY 56
             G+ KW+N  KGYGFITP+   + GDDVF+H      S +   G  +L  G+ V +  
Sbjct: 8  AQIGTCKWFNVLKGYGFITPD---QGGDDVFVHQASEIFSELNMDGFRSLDAGERVRF-V 63

Query: 57 VQNDANGKYSAENLKLVP 74
          ++  + G  +   +   P
Sbjct: 64 IRKRSEGNEATAVVSAEP 81


>gi|71027909|ref|XP_763598.1| cold shock protein [Theileria parva strain Muguga]
 gi|68350551|gb|EAN31315.1| cold shock protein, putative [Theileria parva]
          Length = 94

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G  KW+N  KGYGFIT     E+G+DVF+H+S + + G  +L E + V  + + ++   
Sbjct: 5  NGVCKWFNNKKGYGFIT----LENGEDVFVHQSEIYADGFRSLRENEKVELEVIMDNNRK 60

Query: 64 K 64
          K
Sbjct: 61 K 61


>gi|297158325|gb|ADI08037.1| cold shock protein [Streptomyces bingchenggensis BCW-1]
          Length = 127

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V   G+ +L  GQ V +  V  + 
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPEGVDSLKPGQRVEFGVVAGNR 55

Query: 62 NGKYSAENLKLVPKS 76
               A ++ ++  +
Sbjct: 56 G--DQALSVTVLDPT 68


>gi|24658520|ref|NP_647983.1| lin-28 [Drosophila melanogaster]
 gi|75027386|sp|Q9VRN5|LIN28_DROME RecName: Full=Protein lin-28 homolog
 gi|21842295|gb|AAM77748.1|AF521096_1 RNA-binding protein LIN-28 [Drosophila melanogaster]
 gi|21392070|gb|AAM48389.1| RE05342p [Drosophila melanogaster]
 gi|23094110|gb|AAF50758.2| lin-28 [Drosophila melanogaster]
 gi|220947728|gb|ACL86407.1| lin-28-PA [synthetic construct]
 gi|220957108|gb|ACL91097.1| lin-28-PA [synthetic construct]
          Length = 195

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G  KW+N  KG+GF+TP    + G +VF+H+S +  +G  +L E + V ++  Q  + G 
Sbjct: 41 GKCKWFNVAKGWGFLTP---NDGGQEVFVHQSVIQMSGFRSLGEQEEVEFEC-QRTSRGL 96

Query: 65 YS 66
           +
Sbjct: 97 EA 98


>gi|332283634|ref|YP_004415545.1| cold shock protein [Pusillimonas sp. T7-7]
 gi|330427587|gb|AEC18921.1| cold shock protein [Pusillimonas sp. T7-7]
          Length = 69

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW+N +KG+GFI PE     G D+F H + +   G  +L E Q V+Y   +    
Sbjct: 4  ETGIVKWFNNEKGFGFIKPES---GGKDLFAHHTDIIGTGFKSLEENQRVSYVAAEGQKG 60

Query: 63 GKYSAENL 70
           +  +  +
Sbjct: 61 PQAKSIQV 68


>gi|54294960|ref|YP_127375.1| hypothetical protein lpl2039 [Legionella pneumophila str. Lens]
 gi|53754792|emb|CAH16279.1| hypothetical protein lpl2039 [Legionella pneumophila str. Lens]
          Length = 69

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI  E     G DVF H   ++S+G   LTEGQ V +   Q     
Sbjct: 6  NGVVKWFNEIKGFGFIEQE----GGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKG- 60

Query: 64 KYSAENLKLV 73
             A+N+  +
Sbjct: 61 -LQAQNITPL 69


>gi|296116126|ref|ZP_06834744.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295977232|gb|EFG83992.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 208

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYDYVQND 60
           RG +KWYN  KG+GFITPE     G D+F+H SA+  +   GL +L+EGQ      V+  
Sbjct: 141 RGIVKWYNATKGFGFITPES---GGKDIFVHASALERSGLTGLTSLSEGQTANVQVVEGQ 197

Query: 61  ANGKYSAENL 70
              + +A ++
Sbjct: 198 KGPEAAAISV 207



 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N +KG+GF+     ++   DVFLH +A+   G   ++ G  +     Q    G+ 
Sbjct: 38  TVKWFNSEKGFGFVE---LSDGSGDVFLHANALNPTGFETVSPGSTLVVRIGQG-PKGRQ 93

Query: 66  SAENLKLVPKSSN 78
            A  + +   ++ 
Sbjct: 94  VAAVVSVDESTAQ 106


>gi|221483569|gb|EEE21881.1| glycine-rich protein, putative [Toxoplasma gondii GT1]
          Length = 209

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + RG  KW++  KG+GFIT     E G D+F+H++ + + G  NL EG+ V +  VQ   
Sbjct: 87  IQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVGH 141

Query: 62  NGKYSAENLK 71
           +GK  A ++ 
Sbjct: 142 DGKRKAVSVT 151


>gi|294629991|ref|ZP_06708551.1| cold-shock domain family protein [Streptomyces sp. e14]
 gi|292833324|gb|EFF91673.1| cold-shock domain family protein [Streptomyces sp. e14]
          Length = 127

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVDALKPGQRVEFGVVAGQR 55

Query: 62 NGKYSAENLKLVPKS 76
               A ++ L+  +
Sbjct: 56 G--DQALSVTLLEPT 68


>gi|254481328|ref|ZP_05094573.1| 'Cold-shock' DNA-binding domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214038491|gb|EEB79153.1| 'Cold-shock' DNA-binding domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 145

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G +KW+N  KG+GFIT +     G+++F+H  ++   G   L +GQ V++  V+ + 
Sbjct: 80  REEGEVKWFNVSKGFGFITKD----DGEEIFVHFRSIIGEGRRGLKDGQRVSF--VEANT 133

Query: 62  NGKYSAENLKLV 73
           +    AEN++ +
Sbjct: 134 DKGPQAENVEPL 145


>gi|163791084|ref|ZP_02185504.1| cold-shock protein [Carnobacterium sp. AT7]
 gi|159873640|gb|EDP67724.1| cold-shock protein [Carnobacterium sp. AT7]
          Length = 68

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
          +  G++KW++ +KGYGFI         +D+F+H + +    G  +LT+GQLV+++ ++  
Sbjct: 1  MENGTVKWFSNEKGYGFIE----YNETEDIFVHFTGIVNEDGFKSLTDGQLVSFEILEGT 56

Query: 61 ANGKYSAENLKLV 73
                A N+ ++
Sbjct: 57 RG--PQATNVIVL 67


>gi|158296117|ref|XP_316618.3| AGAP006591-PA [Anopheles gambiae str. PEST]
 gi|157016359|gb|EAA11383.3| AGAP006591-PA [Anopheles gambiae str. PEST]
          Length = 182

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          RG  KW+N  KG+GFITP+   + G +VF+H+S +   G  +L E + V ++
Sbjct: 43 RGRCKWFNVVKGWGFITPD---DGGQEVFVHQSVIQMGGFRSLGENEEVEFE 91


>gi|62421414|gb|AAX82482.1| cold shock protein [Bacillus thuringiensis serovar kurstaki]
          Length = 60

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          K +N +KG+GFI  E     G+DVF+H SA+   G   L EGQ VT++  Q +  G  +A
Sbjct: 3  KRFNSEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN-RGPQAA 57

Query: 68 EN 69
            
Sbjct: 58 NV 59


>gi|254514075|ref|ZP_05126136.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR5-3]
 gi|219676318|gb|EED32683.1| putative 'Cold-shock' DNA-binding domain protein [gamma
          proteobacterium NOR5-3]
          Length = 70

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFIT E       DVF+H  ++   G   L EG+ V +   +      
Sbjct: 7  GTVKWFNNAKGFGFITGESFD---GDVFVHFRSIVGDGFRTLNEGEEVEFTLTEGPKG-- 61

Query: 65 YSAENLKLV 73
            AE++  +
Sbjct: 62 LQAEDVAKI 70


>gi|70905153|gb|AAZ14100.1| cold shock protein [Pseudomonas fluorescens]
          Length = 69

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW+N +KG+GFITP+G    GDD+F+H       G  +L EGQ V++  V    
Sbjct: 4  RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHF-PFQGTGFKSLQEGQKVSFVVVNGQK 59

Query: 62 NGKYSAENLKLV 73
               A+ +++V
Sbjct: 60 G--LQADEVQVV 69


>gi|295838145|ref|ZP_06825078.1| cold-shock domain family protein [Streptomyces sp. SPB74]
 gi|295826890|gb|EFG65133.1| cold-shock domain family protein [Streptomyces sp. SPB74]
          Length = 127

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H SA+    +  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVHSSALPQD-VETLKPGQRVEFGVVAGQR 55

Query: 62 NGKYSAENLKLVPKS 76
               A  + ++  +
Sbjct: 56 G--DQALTVTVLDPA 68


>gi|240139725|ref|YP_002964202.1| putative transcriptional regulator, cold shock protein
           [Methylobacterium extorquens AM1]
 gi|254562138|ref|YP_003069233.1| transcriptional regulator, cold shock protein [Methylobacterium
           extorquens DM4]
 gi|240009699|gb|ACS40925.1| putative transcriptional regulator, cold shock protein
           [Methylobacterium extorquens AM1]
 gi|254269416|emb|CAX25382.1| putative transcriptional regulator, cold shock protein
           [Methylobacterium extorquens DM4]
          Length = 278

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KWY+P KG+GF++     + G DVF+HRSA++ AGL +L EGQ VT   V+     
Sbjct: 213 TGTVKWYDPAKGFGFVSV---NDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGR 269

Query: 64  KYSAENLK 71
           + S+  ++
Sbjct: 270 EASSITVE 277



 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N +KG+GF+      +   D FLH  AV +AG  +L  G  +T    Q     + 
Sbjct: 81  TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 137

Query: 66  SAEN 69
           +A N
Sbjct: 138 TAVN 141


>gi|221504402|gb|EEE30077.1| glycine-rich protein, putative [Toxoplasma gondii VEG]
          Length = 209

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + RG  KW++  KG+GFIT     E G D+F+H++ + + G  NL EG+ V +  VQ   
Sbjct: 87  IQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVGH 141

Query: 62  NGKYSAENLK 71
           +GK  A ++ 
Sbjct: 142 DGKRKAVSVT 151


>gi|218531150|ref|YP_002421966.1| cold-shock DNA-binding domain protein [Methylobacterium
           chloromethanicum CM4]
 gi|218523453|gb|ACK84038.1| cold-shock DNA-binding domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 279

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KWY+P KG+GF++     + G DVF+HRSA++ AGL +L EGQ VT   V+     
Sbjct: 214 TGTVKWYDPAKGFGFVSV---NDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGR 270

Query: 64  KYSAENLK 71
           + S+  ++
Sbjct: 271 EASSITVE 278



 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N +KG+GF+      +   D FLH  AV +AG  +L  G  +T    Q     + 
Sbjct: 81  TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 137

Query: 66  SAEN 69
           +A N
Sbjct: 138 TAVN 141


>gi|163852391|ref|YP_001640434.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|163663996|gb|ABY31363.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
          Length = 281

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KWY+P KG+GF++     + G DVF+HRSA++ AGL +L EGQ VT   V+     
Sbjct: 216 TGTVKWYDPAKGFGFVSV---NDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGR 272

Query: 64  KYSAENLK 71
           + S+  ++
Sbjct: 273 EASSITVE 280



 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N +KG+GF+      +   D FLH  AV +AG  +L  G  +T    Q     + 
Sbjct: 81  TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 137

Query: 66  SAEN 69
           +A N
Sbjct: 138 TAVN 141


>gi|294013110|ref|YP_003546570.1| cold shock protein CspA [Sphingobium japonicum UT26S]
 gi|292676440|dbj|BAI97958.1| cold shock protein CspA [Sphingobium japonicum UT26S]
          Length = 272

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AG+  L EG  + ++  + D  GK
Sbjct: 206 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMSALNEGDRLDFEL-EVDRRGK 261

Query: 65  YSAENLK 71
           Y+A NL+
Sbjct: 262 YAAVNLQ 268



 Score = 85.0 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +K++N  KG+GFI  +   + G+DVF+H SAV  AGL  L EGQ + +  V  D  G
Sbjct: 101 TGVVKFFNGQKGFGFIVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLGFTLV--DRGG 155

Query: 64  KYSAENLKL 72
           K SA +LK+
Sbjct: 156 KVSATDLKI 164


>gi|149908141|ref|ZP_01896805.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
 gi|149808683|gb|EDM68616.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36]
          Length = 69

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K++N  KG+GFI  E    +G DVF+H S++   G   LT+GQ V +   Q      
Sbjct: 7  GKVKFFNEAKGFGFIEQE----NGPDVFVHFSSILVDGFKVLTDGQKVEFTVGQGQKG-- 60

Query: 65 YSAENLKLV 73
            AEN+K +
Sbjct: 61 PQAENVKPL 69


>gi|113460999|ref|YP_719066.1| cold-shock DNA-binding protein family protein [Haemophilus somnus
          129PT]
 gi|170717567|ref|YP_001784653.1| cold-shock DNA-binding domain-containing protein [Haemophilus
          somnus 2336]
 gi|112823042|gb|ABI25131.1| cold-shock DNA-binding protein family [Haemophilus somnus 129PT]
 gi|168825696|gb|ACA31067.1| putative cold-shock DNA-binding domain protein [Haemophilus
          somnus 2336]
          Length = 69

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GF++ E S     DVF H S +   G  +L  GQ V  + V  D 
Sbjct: 1  MEVGIVKWFNNAKGFGFLSVESSDV---DVFAHYSVIEMEGYRSLKAGQKVQCEVVHGDK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|255525596|ref|ZP_05392530.1| cold-shock DNA-binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296185483|ref|ZP_06853893.1| cold-shock DNA-binding domain protein [Clostridium
          carboxidivorans P7]
 gi|255510686|gb|EET86992.1| cold-shock DNA-binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296050317|gb|EFG89741.1| cold-shock DNA-binding domain protein [Clostridium
          carboxidivorans P7]
          Length = 67

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          +  G +KW+N +KG+GFI    S E G DVF+H SA+   G   +L+EGQ V YD ++  
Sbjct: 1  MLTGVVKWFNDEKGFGFI----SGEDGTDVFVHYSAIKEEGKRKDLSEGQQVQYDVIETP 56

Query: 61 ANGKYSAENLK 71
                A N++
Sbjct: 57 KG--LQASNVQ 65


>gi|219123826|ref|XP_002182218.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406179|gb|EEC46119.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 286

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 4  RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDA 61
          +G++KW++  KGYGF+ P   ++ + +++F+H++++ S G    L E   + +D  +   
Sbjct: 5  QGTVKWFDSRKGYGFVAPTSDNSPTAEEIFVHQTSIQSEGAYRTLVENSEIEFDVEKEAE 64

Query: 62 NGKYSAENLK 71
          +GK+ A N+ 
Sbjct: 65 SGKFKAINVT 74


>gi|119476410|ref|ZP_01616761.1| Cold-shock DNA-binding protein [marine gamma proteobacterium
           HTCC2143]
 gi|119450274|gb|EAW31509.1| Cold-shock DNA-binding protein [marine gamma proteobacterium
           HTCC2143]
          Length = 144

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
             G++KW+N  KGYGF+T      SG+++F+H  +++  G   L EGQ + +  V  D  
Sbjct: 77  EIGTVKWFNVSKGYGFVT----RASGEEIFVHFRSISGNGRKVLREGQKIEFSVVDGDKG 132

Query: 63  GKYSAENLKLV 73
               AE++ +V
Sbjct: 133 --PQAEDVDIV 141


>gi|56416469|ref|YP_153543.1| cold shock protein [Anaplasma marginale str. St. Maries]
 gi|222474838|ref|YP_002563253.1| cold shock protein (cspA) [Anaplasma marginale str. Florida]
 gi|269959118|ref|YP_003328907.1| putative cold-shock protein [Anaplasma centrale str. Israel]
 gi|56387701|gb|AAV86288.1| cold shock protein [Anaplasma marginale str. St. Maries]
 gi|222418974|gb|ACM48997.1| cold shock protein (cspA) [Anaplasma marginale str. Florida]
 gi|269848949|gb|ACZ49593.1| putative cold-shock protein [Anaplasma centrale str. Israel]
          Length = 92

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 12/83 (14%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESG----------DDVFLHRSAVASAGLFNLTEGQLV 52
          + G +KW++ +KGYGFI  +GS +             DVF+H +++  + + NL EGQ V
Sbjct: 12 YTGHVKWFSVEKGYGFICKDGSDDGKSGGASFGRGDKDVFVHITSLQRSRIDNLREGQRV 71

Query: 53 TYDYVQNDANGKYSAENLKLVPK 75
           Y    +++NGK SA NL+++ +
Sbjct: 72 RYQL--DESNGKVSAVNLEVLSE 92


>gi|33152437|ref|NP_873790.1| cold shock-like protein CspD [Haemophilus ducreyi 35000HP]
 gi|33148660|gb|AAP96179.1| cold shock-like protein CspD [Haemophilus ducreyi 35000HP]
          Length = 68

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H G +KW+N  KG+GFIT +       D+F H S +   G  +L  GQ V ++ V N+ 
Sbjct: 1  MHIGIVKWFNNVKGFGFITCDTVE---GDIFAHFSEIKQDGYRSLKVGQKVQFELVTNER 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|40062711|gb|AAR37624.1| cold shock DNA-binding domain protein [uncultured marine
          bacterium 314]
          Length = 68

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N  KGYGFI  E       DVF+H +AV  AGL  L EG  +T++ V+N 
Sbjct: 1  MSLKGKVKWFNGKKGYGFIEREDKE---KDVFVHHTAVRDAGLKYLNEGDELTFE-VENG 56

Query: 61 ANGKYSAENLK 71
            G  SA NL+
Sbjct: 57 EKGP-SAVNLQ 66


>gi|229526567|ref|ZP_04415971.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
 gi|229336725|gb|EEO01743.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426]
          Length = 72

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GS+KW+N  KG+GFITP+     G DVF+H +++AS G+  L E Q V +   Q     
Sbjct: 8  TGSVKWFNESKGFGFITPDS---GGSDVFVHFNSIASGGVKTLFEVQKVNFSIEQGSKG- 63

Query: 64 KYSAENL 70
             A N+
Sbjct: 64 -LQAVNV 69


>gi|302535935|ref|ZP_07288277.1| cold shock protein [Streptomyces sp. C]
 gi|302444830|gb|EFL16646.1| cold shock protein [Streptomyces sp. C]
          Length = 127

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVDALKPGQRVEFGVVAGQR 55

Query: 62 NGKYSAENLKLVPKS 76
               A ++ ++  +
Sbjct: 56 G--DQALSVTVLDPA 68


>gi|302520002|ref|ZP_07272344.1| cold shock protein B [Streptomyces sp. SPB78]
 gi|318061816|ref|ZP_07980537.1| putative cold shock protein [Streptomyces sp. SA3_actG]
 gi|318079283|ref|ZP_07986615.1| putative cold shock protein [Streptomyces sp. SA3_actF]
 gi|302428897|gb|EFL00713.1| cold shock protein B [Streptomyces sp. SPB78]
          Length = 127

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H SA+    +  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVHSSALPQD-VETLKPGQRVEFGVVAGQR 55

Query: 62 NGKYSAENLKLVPKS 76
               A  + ++  +
Sbjct: 56 G--DQALTVTVLDPT 68


>gi|237841239|ref|XP_002369917.1| glycine-rich protein 2, putative [Toxoplasma gondii ME49]
 gi|211967581|gb|EEB02777.1| glycine-rich protein 2, putative [Toxoplasma gondii ME49]
          Length = 209

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + RG  KW++  KG+GFIT     E G D+F+H++ + + G  NL EG+ V +  VQ   
Sbjct: 87  IQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVGH 141

Query: 62  NGKYSAENLK 71
           +GK  A ++ 
Sbjct: 142 DGKRKAVSVT 151


>gi|52842335|ref|YP_096134.1| cold shock DNA binding domain-containing protein [Legionella
          pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54297985|ref|YP_124354.1| hypothetical protein lpp2041 [Legionella pneumophila str. Paris]
 gi|148359631|ref|YP_001250838.1| cold shock DNA binding domain-containing protein [Legionella
          pneumophila str. Corby]
 gi|296107674|ref|YP_003619375.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy]
 gi|52629446|gb|AAU28187.1| cold shock DNA binding domain protein [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
 gi|53751770|emb|CAH13193.1| hypothetical protein lpp2041 [Legionella pneumophila str. Paris]
 gi|148281404|gb|ABQ55492.1| cold shock DNA binding domain protein [Legionella pneumophila
          str. Corby]
 gi|295649576|gb|ADG25423.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 69

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI  E     G DVF H   ++S+G   LTEGQ V +   Q     
Sbjct: 6  NGVVKWFNEIKGFGFIEQE----GGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKG- 60

Query: 64 KYSAENLKLV 73
             A+N+  +
Sbjct: 61 -LQAQNITAL 69


>gi|239981450|ref|ZP_04703974.1| putative cold shock protein [Streptomyces albus J1074]
 gi|291453301|ref|ZP_06592691.1| cold shock protein [Streptomyces albus J1074]
 gi|291356250|gb|EFE83152.1| cold shock protein [Streptomyces albus J1074]
          Length = 127

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVEALKPGQRVEFGVV-AGQ 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  +   + L P  S
Sbjct: 55 RGDQALSVVLLDPAPS 70


>gi|254994694|ref|ZP_05276884.1| cold shock protein (cspA) [Anaplasma marginale str. Mississippi]
 gi|255002811|ref|ZP_05277775.1| cold shock protein (cspA) [Anaplasma marginale str. Puerto Rico]
 gi|255003942|ref|ZP_05278743.1| cold shock protein (cspA) [Anaplasma marginale str. Virginia]
          Length = 91

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 12/83 (14%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESG----------DDVFLHRSAVASAGLFNLTEGQLV 52
          + G +KW++ +KGYGFI  +GS +             DVF+H +++  + + NL EGQ V
Sbjct: 11 YTGHVKWFSVEKGYGFICKDGSDDGKSGGASFGRGDKDVFVHITSLQRSRIDNLREGQRV 70

Query: 53 TYDYVQNDANGKYSAENLKLVPK 75
           Y    +++NGK SA NL+++ +
Sbjct: 71 RYQL--DESNGKVSAVNLEVLSE 91


>gi|73667319|ref|YP_303335.1| cold-shock DNA-binding protein family protein [Ehrlichia canis
          str. Jake]
 gi|72394460|gb|AAZ68737.1| cold-shock DNA-binding protein family [Ehrlichia canis str. Jake]
          Length = 87

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTE------SGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          + G +KW++ +KGYGFI  +   +         D+F+H +A+  + +  L EGQ V Y  
Sbjct: 11 YTGYVKWFSSEKGYGFICKDQGDKVKNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQL 70

Query: 57 VQNDANGKYSAENLKLVP 74
            +  NGK+SA NL+++ 
Sbjct: 71 --DKNNGKFSAVNLEVLE 86


>gi|239930549|ref|ZP_04687502.1| putative cold shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291438911|ref|ZP_06578301.1| cold shock protein B [Streptomyces ghanaensis ATCC 14672]
 gi|291341806|gb|EFE68762.1| cold shock protein B [Streptomyces ghanaensis ATCC 14672]
          Length = 127

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVEALKPGQRVEFGVVAGQR 55

Query: 62 NGKYSAENLKLVPKS 76
               A +L L+  +
Sbjct: 56 G--DQALSLTLLDPT 68


>gi|170585110|ref|XP_001897330.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
          malayi]
 gi|158595278|gb|EDP33845.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
          malayi]
          Length = 205

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 12/81 (14%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH--------RSAVASAGLFNLTEGQLVT 53
          +  G+ KW+N  KGYGFITP+   E GDDVF+H        +S +   G  +L  G+ V 
Sbjct: 8  IQVGTCKWFNVLKGYGFITPD---EGGDDVFVHQASGVFFIQSELNMDGFRSLDAGERVR 64

Query: 54 YDYVQNDANGKYSAENLKLVP 74
          +  ++    G  +   +   P
Sbjct: 65 F-VIRRRPEGNEATAVVSAEP 84


>gi|85001185|ref|XP_955311.1| cold shock protein [Theileria annulata strain Ankara]
 gi|65303457|emb|CAI75835.1| cold shock protein, putative [Theileria annulata]
          Length = 95

 Score = 85.0 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G  KW+N  KGYGFIT     E+G+DVF+H+S + + G  +L E + V  + + ++   
Sbjct: 5  NGVCKWFNNKKGYGFIT----LENGEDVFVHQSEIYADGFRSLHENEKVELEVIMDNNRK 60

Query: 64 K 64
          K
Sbjct: 61 K 61


>gi|297193662|ref|ZP_06911060.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151865|gb|EFH31383.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 127

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  +G+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPSGVEALKPGQRVEFGVVAGQR 55

Query: 62 NGKYSAENLKLVPKS 76
               A ++ L+  +
Sbjct: 56 G--DQALSVTLLDPT 68


>gi|152992263|ref|YP_001357984.1| cold shock protein [Sulfurovum sp. NBC37-1]
 gi|151424124|dbj|BAF71627.1| cold shock protein [Sulfurovum sp. NBC37-1]
          Length = 72

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQNDA 61
           G++KW+N +KGYGFI  E     G DVF+H   V +   G   L EGQ VT++  +   
Sbjct: 6  NGTVKWFNDEKGYGFIQQE---NGGSDVFVHFRQVNNDNGGRVTLAEGQAVTFEIGEGQK 62

Query: 62 NGKYSAENLKLV 73
               AEN+  +
Sbjct: 63 G--PQAENVTPL 72


>gi|259047117|ref|ZP_05737518.1| cold shock domain protein CspD [Granulicatella adiacens ATCC
          49175]
 gi|259036167|gb|EEW37422.1| cold shock domain protein CspD [Granulicatella adiacens ATCC
          49175]
          Length = 71

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 3/58 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +  G +KW+N +KGYGFI    +T++ +D+F+H + + + G  +L EGQ VT++  + 
Sbjct: 1  MEVGIVKWFNNEKGYGFI---RNTKTDEDIFVHFTGIVAEGFKSLKEGQKVTFEISKG 55


>gi|302560009|ref|ZP_07312351.1| cold-shock domain family protein [Streptomyces griseoflavus
          Tu4000]
 gi|302477627|gb|EFL40720.1| cold-shock domain family protein [Streptomyces griseoflavus
          Tu4000]
          Length = 127

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVEALKPGQRVEFGVVAGQR 55

Query: 62 NGKYSAENLKLVPKS 76
               A +L ++  +
Sbjct: 56 G--DQALSLTILDPT 68


>gi|188582398|ref|YP_001925843.1| cold-shock DNA-binding domain protein [Methylobacterium populi
           BJ001]
 gi|179345896|gb|ACB81308.1| cold-shock DNA-binding domain protein [Methylobacterium populi
           BJ001]
          Length = 268

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KWY+P KG+GF++     + G DVF+HRSA++ AGL +L EGQ VT   V+     
Sbjct: 203 TGTVKWYDPAKGFGFVSV---NDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGR 259

Query: 64  KYSAENL 70
           + S+  +
Sbjct: 260 EASSITV 266



 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N +KG+GF+      +   D FLH  AV +AG  +L  G  +T    Q     + 
Sbjct: 78  TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 134

Query: 66  SAEN 69
           +A N
Sbjct: 135 TAVN 138


>gi|302808614|ref|XP_002986001.1| hypothetical protein SELMODRAFT_123455 [Selaginella
          moellendorffii]
 gi|300146149|gb|EFJ12820.1| hypothetical protein SELMODRAFT_123455 [Selaginella
          moellendorffii]
          Length = 63

 Score = 84.6 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 3/57 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G +KW+N  KG+GFITP+   +  +++F+H+SA+ + G  +L EG++V +   Q +
Sbjct: 10 TGKVKWFNVTKGFGFITPD---DGSEELFVHQSAIFAEGFRSLREGEIVEFSVEQGE 63


>gi|291513784|emb|CBK62994.1| cold-shock DNA-binding protein family [Alistipes shahii WAL 8301]
          Length = 66

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KGYGFIT     E+G ++F+H S +A  G  +L EGQ V ++        
Sbjct: 2  TGKVKWFDGKKGYGFIT----AENGKEIFVHFSGIAKDGFKSLNEGQAVEFEVGSGAKG- 56

Query: 64 KYSAENLKLVP 74
             A N+ +V 
Sbjct: 57 -EQAINVTVVE 66


>gi|254429192|ref|ZP_05042899.1| 'Cold-shock' DNA-binding domain protein [Alcanivorax sp. DG881]
 gi|196195361|gb|EDX90320.1| 'Cold-shock' DNA-binding domain protein [Alcanivorax sp. DG881]
          Length = 202

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 6/68 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            RG +KW+NP+KG+GFI     T+SG+++F+H  AV + G  +L  G  V +D   +D  
Sbjct: 137 QRGEVKWFNPNKGFGFI----LTDSGEELFVHFKAVQNGGRRSLRTGTKVRFDTRMSDRG 192

Query: 63  GKYSAENL 70
               A+N+
Sbjct: 193 --EQADNV 198


>gi|328884184|emb|CCA57423.1| Cold shock protein CspC [Streptomyces venezuelae ATCC 10712]
          Length = 127

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVDALKPGQRVEFGVVAGQR 55

Query: 62 NGKYSAENLKLVPKS 76
               A ++ ++  +
Sbjct: 56 G--DQALSVTILDPT 68


>gi|323158695|gb|EFZ44709.1| cold shock-like protein cspI [Escherichia coli E128010]
          Length = 63

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
          N  KG+GFITP    +   DVF+H SA+   G   L EGQ V ++  Q+   G  +A N+
Sbjct: 6  NESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKGP-AAVNV 60

Query: 71 KLV 73
            +
Sbjct: 61 TAI 63


>gi|301321057|gb|ADK69700.1| cold-shock DNA-binding domain protein [Mycoplasma mycoides subsp.
          mycoides SC str. Gladysdale]
          Length = 69

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFIT +       DVF++ S +   G   L +GQ VTY+  +   
Sbjct: 1  MNTGIVKWFNDEKGFGFITNDS---DNKDVFVYYSNINVNGYKTLEQGQKVTYELNKGIK 57

Query: 62 NGKYSAENLKL 72
               A N+ +
Sbjct: 58 G--LEAFNVSI 66


>gi|330982957|gb|EGH81060.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 50

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 3/49 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
             G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G  +L EGQ
Sbjct: 4  RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDGFKSLKEGQ 49


>gi|307293725|ref|ZP_07573569.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306879876|gb|EFN11093.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 275

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +K++N  KG+GFI  +   + G+DVF+H SAV  AGL  L EGQ + +  V  D  G
Sbjct: 106 TGVVKFFNGQKGFGFIVRD---DGGEDVFVHISAVEQAGLTGLAEGQQLGFTLV--DRGG 160

Query: 64  KYSAENLKL 72
           K SA +LK+
Sbjct: 161 KVSATDLKI 169



 Score = 83.8 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++K++N  KG+GFI  +   +   D F+H SAV  AG+  L EG  + ++  + D  GK
Sbjct: 209 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMSALNEGDRLDFEL-EVDRRGK 264

Query: 65  YSAENLK 71
           Y+A NL+
Sbjct: 265 YAAVNLQ 271


>gi|160914514|ref|ZP_02076729.1| hypothetical protein EUBDOL_00520 [Eubacterium dolichum DSM 3991]
 gi|158433672|gb|EDP11961.1| hypothetical protein EUBDOL_00520 [Eubacterium dolichum DSM 3991]
          Length = 65

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N +KG+GFI     TE   D+F+H S +   G  +L EG+ V ++  +++   
Sbjct: 2  TGNVKWFNAEKGFGFI----RTEEEKDIFVHYSQIVQDGYKSLNEGEAVRFEIFESEKG- 56

Query: 64 KYSAENLK 71
             A+N++
Sbjct: 57 -LQAKNVE 63


>gi|313157470|gb|EFR56889.1| cold shock-like protein CspE [Alistipes sp. HGB5]
          Length = 66

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KGYGFIT     E+G ++F+H S + + G  +L EGQ V ++        
Sbjct: 2  TGKVKWFDSKKGYGFIT----GENGKEIFVHFSGIVTDGFKSLNEGQAVEFEVGSGAKG- 56

Query: 64 KYSAENLKLVP 74
             A N+ ++ 
Sbjct: 57 -DQAVNVTVIE 66


>gi|163802256|ref|ZP_02196151.1| Cold shock protein [Vibrio sp. AND4]
 gi|159174061|gb|EDP58871.1| Cold shock protein [Vibrio sp. AND4]
          Length = 69

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N  KG+GFI+ E    SGDD+F+H  ++   G   L EG+ V++         
Sbjct: 6  TGTVKWFNEAKGFGFISQE----SGDDLFVHFRSILGDGFKKLVEGEQVSFTVGHGPKG- 60

Query: 64 KYSAENL 70
             AEN+
Sbjct: 61 -LQAENV 66


>gi|254514074|ref|ZP_05126135.1| cold shock protein [gamma proteobacterium NOR5-3]
 gi|219676317|gb|EED32682.1| cold shock protein [gamma proteobacterium NOR5-3]
          Length = 171

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
             G++KW+N  KG+GFI  E    +GD++F+H  ++   G  +L +G  V Y  V  D  
Sbjct: 106 ENGTVKWFNGTKGFGFIIRE----NGDEIFVHHRSIVGEGRRSLRDGAAVKYRVVTTDKG 161

Query: 63  GKYSAENLKLV 73
               AE ++ +
Sbjct: 162 --PQAEEVEAI 170


>gi|157105290|ref|XP_001648803.1| RNA-binding protein lin-28 [Aedes aegypti]
 gi|108880147|gb|EAT44372.1| RNA-binding protein lin-28 [Aedes aegypti]
          Length = 157

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          RG  KW+N  KG+GFITP+   + G DVF+H+S +   G  +L + + V ++    D  
Sbjct: 2  RGLCKWFNVIKGWGFITPD---DGGQDVFVHQSVLQMEGFRSLGQNEPVEFEAKLTDKG 57


>gi|91226275|ref|ZP_01261115.1| cold-shock DNA-binding domain protein [Vibrio alginolyticus
          12G01]
 gi|91189286|gb|EAS75565.1| cold-shock DNA-binding domain protein [Vibrio alginolyticus
          12G01]
          Length = 69

 Score = 83.8 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI+     ++GDD+F+H  ++   G   L EG  V++   +      
Sbjct: 7  GTVKWFNETKGFGFISQ----QNGDDLFVHFRSILGDGFKKLVEGDKVSFTVGKGPKG-- 60

Query: 65 YSAENLKLV 73
            AEN+  +
Sbjct: 61 LQAENVTTI 69


>gi|325003077|ref|ZP_08124189.1| cold shock protein CspA [Pseudonocardia sp. P1]
          Length = 309

 Score = 83.8 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQND 60
          + +G+++W++ ++G+GF+ PE   +   DVF+H S +   G    L EGQ V ++  +ND
Sbjct: 1  MQQGTVRWFDAERGFGFLAPE---DGSPDVFVHASEIVGGGGATVLREGQAVEFEIGEND 57

Query: 61 ANGKYSAENLKLVPKSS 77
                A  +++   ++
Sbjct: 58 RG--PQALRVRVTADAA 72



 Score = 70.8 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++ WY P KGYGF +P+   + G D+F+H SA+ + G+    EGQ V +  V +   G 
Sbjct: 81  GTVNWYEPGKGYGFASPD---DGGADIFVHSSAIVTGGVVT--EGQRVAFLVV-DGERGP 134

Query: 65  YSAENLKL 72
            +   + L
Sbjct: 135 QAGHVIPL 142



 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           + WY+ DKG+GFI P+   E   DVF+H  A+A  GL  L EG  V ++    D      
Sbjct: 162 VAWYDEDKGFGFINPDSGDE---DVFVHARALA-EGLTWLMEGDRVAFEVASGDKG--PQ 215

Query: 67  AENLKLVPK 75
           A ++ LV +
Sbjct: 216 ARDVHLVRE 224



 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +  Y+ D+G+GFITP+     GDD+F H S V  +    L +G  V +   Q+D   
Sbjct: 247 EGVVARYDDDRGFGFITPDA---GGDDLFAHVSVVMGS--EPLQKGDRVRFAVRQSDRGP 301

Query: 64  K 64
           +
Sbjct: 302 Q 302


>gi|260775774|ref|ZP_05884670.1| cold shock protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608190|gb|EEX34359.1| cold shock protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 69

 Score = 83.8 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI+      +GDD+F+H  ++   G   L EG  V++   +      
Sbjct: 7  GTVKWFNETKGFGFISQ----ANGDDLFVHFRSILGDGFKKLVEGDKVSFTVGKGPKG-- 60

Query: 65 YSAENLKLV 73
            AEN+  +
Sbjct: 61 LQAENVTTI 69


>gi|91223648|ref|ZP_01258913.1| Cold shock protein [Vibrio alginolyticus 12G01]
 gi|91191734|gb|EAS77998.1| Cold shock protein [Vibrio alginolyticus 12G01]
          Length = 69

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI+ E    +GDD+F+H  ++   G   L EG+ V++   +      
Sbjct: 7  GTVKWFNETKGFGFISQE----NGDDLFVHFRSILGDGFKKLIEGEQVSFTVGKGPKG-- 60

Query: 65 YSAENLKLV 73
            AEN+  +
Sbjct: 61 LQAENVTTI 69


>gi|15596158|ref|NP_249652.1| cold-shock protein [Pseudomonas aeruginosa PAO1]
 gi|218893068|ref|YP_002441937.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58]
 gi|254239310|ref|ZP_04932633.1| hypothetical protein PACG_05506 [Pseudomonas aeruginosa C3719]
 gi|9946868|gb|AAG04350.1|AE004530_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1]
 gi|126171241|gb|EAZ56752.1| hypothetical protein PACG_05506 [Pseudomonas aeruginosa C3719]
 gi|218773296|emb|CAW29108.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58]
          Length = 63

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GFI+ +    SG+D+F+H  A+   G   L EGQ V +  VQ D      
Sbjct: 1  MKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDKG--LQ 54

Query: 67 AENL 70
          AE++
Sbjct: 55 AEDV 58


>gi|88606701|ref|YP_504760.1| CSD family cold shock protein [Anaplasma phagocytophilum HZ]
 gi|88597764|gb|ABD43234.1| cold shock protein, CSD family [Anaplasma phagocytophilum HZ]
          Length = 89

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 10/81 (12%)

Query: 3  HRGSIKWYNPDKGYGFITPEGST--------ESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          + G +KW++ +KGYGFI  + S             DVF+H +++  + + NL EGQ V Y
Sbjct: 11 YTGHVKWFSVEKGYGFICKDSSEGSKGSAMGHGEKDVFVHITSLQRSRIDNLREGQKVRY 70

Query: 55 DYVQNDANGKYSAENLKLVPK 75
             +N  NGK SA NL+++ +
Sbjct: 71 QLDEN--NGKVSAVNLEVLSE 89


>gi|268315694|ref|YP_003289413.1| cold-shock DNA-binding domain-containing protein [Rhodothermus
          marinus DSM 4252]
 gi|262333228|gb|ACY47025.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM
          4252]
          Length = 76

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQN 59
          M  RG +KW+N DKGYGFI P    +   DVF+HR+ V   G    L EG+ V+Y+  + 
Sbjct: 1  MAQRGRVKWFNIDKGYGFIEP---NDGSKDVFVHRNNVPGLGWDEGLREGEEVSYEVERT 57

Query: 60 DANGKYSAENLKLVPKSSN 78
                SA N++ + +SS 
Sbjct: 58 PKG--LSAMNVERLSRSSE 74


>gi|57239424|ref|YP_180560.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str.
          Welgevonden]
 gi|58579396|ref|YP_197608.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str.
          Welgevonden]
 gi|58617451|ref|YP_196650.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str.
          Gardel]
 gi|57161503|emb|CAH58429.1| hypothetical protein Erum6970 [Ehrlichia ruminantium str.
          Welgevonden]
 gi|58417063|emb|CAI28176.1| Putative Cold shock-like protein cspA [Ehrlichia ruminantium str.
          Gardel]
 gi|58418022|emb|CAI27226.1| Putative Cold shock-like protein cspA [Ehrlichia ruminantium str.
          Welgevonden]
          Length = 95

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 8/79 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTE------SGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++ G +KW++ +KGYGFI  +   +         D+F+H +A+  + +  L EGQ V Y 
Sbjct: 18 IYTGYVKWFSSEKGYGFIRKDHGDKVKNIGQDVKDIFVHITALQKSRISELKEGQKVKYQ 77

Query: 56 YVQNDANGKYSAENLKLVP 74
             +  NGK+SA NL+++ 
Sbjct: 78 L--DKNNGKFSAINLEVLE 94


>gi|78777701|ref|YP_394016.1| cold-shock DNA-binding domain-containing protein [Sulfurimonas
          denitrificans DSM 1251]
 gi|78498241|gb|ABB44781.1| cold-shock DNA-binding protein family [Sulfurimonas denitrificans
          DSM 1251]
          Length = 72

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQNDAN 62
          GS+KW+N +KGYGFI  E     G DVF+H   V     G  +L+EGQ VT++  +    
Sbjct: 7  GSVKWFNEEKGYGFIQQE---NGGKDVFVHFRQVNRTGPGRVSLSEGQKVTFELGEGQKG 63

Query: 63 GKYSAENLKLV 73
              AEN+  +
Sbjct: 64 --PQAENVTPL 72


>gi|260889081|ref|ZP_05900344.1| conserved domain protein [Leptotrichia hofstadii F0254]
 gi|260861141|gb|EEX75641.1| conserved domain protein [Leptotrichia hofstadii F0254]
          Length = 75

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI+     E G+D FLH S +   G   + EG+ V++D V+    G 
Sbjct: 13 GKVKWFNDKKGFGFIS----GEDGNDYFLHFSKINKEGFKTVNEGEEVSFD-VEEGPKGP 67

Query: 65 YSAENLK 71
           +   + 
Sbjct: 68 QATNVIS 74


>gi|312883792|ref|ZP_07743511.1| cold shock protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368541|gb|EFP96074.1| cold shock protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 69

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI+ E S    DD+F+H   +   G   L EG  V++   +      
Sbjct: 7  GTVKWFNETKGFGFISQENS----DDLFVHFRNILGDGFKKLVEGDKVSFTVGRGPKG-- 60

Query: 65 YSAENLKLV 73
            AEN+  +
Sbjct: 61 LQAENVTTI 69


>gi|254298844|ref|ZP_04966294.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
 gi|157809241|gb|EDO86411.1| cold-shock domain family protein [Burkholderia pseudomallei 406e]
          Length = 52

 Score = 83.8 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          +  G +KW+N  KG+GFIT +     G+D+F H S +   G   L E Q V+
Sbjct: 1  MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMEGFKTLKENQRVS 49


>gi|307720566|ref|YP_003891706.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica
          DSM 16294]
 gi|306978659|gb|ADN08694.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica
          DSM 16294]
          Length = 72

 Score = 83.5 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQN 59
          +  GS+KW+N +KGYGFI  +     G DVF+H   V +   G  +L EGQ VT++  + 
Sbjct: 4  LQDGSVKWFNDEKGYGFIQQD---NGGKDVFVHFRQVNNNGGGRVSLAEGQRVTFEVGEG 60

Query: 60 DANGKYSAENLKLV 73
                 AEN+  +
Sbjct: 61 QKG--PQAENVTPL 72


>gi|331703045|ref|YP_004399732.1| Cold shock protein [Mycoplasma mycoides subsp. capri LC str.
          95010]
 gi|256383681|gb|ACU78251.1| cold-shock DNA-binding domain, putative [Mycoplasma mycoides
          subsp. capri str. GM12]
 gi|256384512|gb|ACU79081.1| cold-shock DNA-binding domain, putative [Mycoplasma mycoides
          subsp. capri str. GM12]
 gi|296456011|gb|ADH22246.1| cold-shock DNA-binding domain, putative [synthetic Mycoplasma
          mycoides JCVI-syn1.0]
 gi|328801600|emb|CBW53753.1| Cold shock protein [Mycoplasma mycoides subsp. capri LC str.
          95010]
          Length = 69

 Score = 83.5 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFIT +       DVF++ S +   G   L +GQ VTY+  +   
Sbjct: 1  MNTGIVKWFNDEKGFGFITNDS---DNKDVFVYFSNINVNGYKTLEQGQKVTYELNKGIK 57

Query: 62 NGKYSAENLKL 72
               A N+ +
Sbjct: 58 G--LEAFNVSI 66


>gi|145347619|ref|XP_001418260.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578489|gb|ABO96553.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 106

 Score = 83.5 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N  KG+GFI P    +  +++F+H++ ++ AG  ++ EG+ V YD    D   
Sbjct: 6  RGKVKWFNATKGFGFIIPH---DGSEEIFVHQTGISCAGFRSVWEGEEVEYDVDDTDFAP 62

Query: 64 KYSAENLK 71
          K  A N+ 
Sbjct: 63 K--AVNVT 68


>gi|284989393|ref|YP_003407947.1| cold-shock DNA-binding domain-containing protein
          [Geodermatophilus obscurus DSM 43160]
 gi|284062638|gb|ADB73576.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus
          DSM 43160]
          Length = 131

 Score = 83.5 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+NP+KG+GF++ E     G DVF+H+ A+  +G   L  GQ V +  V    
Sbjct: 1  MPTGRVKWFNPEKGFGFLSRE----DGPDVFVHKDAL-PSGTSELKPGQRVEFGIVAGRR 55

Query: 62 NGKYSAENLKLVPK 75
               A  ++++  
Sbjct: 56 G--DQALQVRVLDP 67


>gi|94264655|ref|ZP_01288437.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
 gi|93454886|gb|EAT05130.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1]
          Length = 70

 Score = 83.5 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG+GFI  E  +    DVF+H   +   G  +L +GQ V +  V+     
Sbjct: 6  NGKVKWFNAPKGFGFIERENDS----DVFVHYRGIKGDGYRSLQDGQEVIFSVVETPKG- 60

Query: 64 KYSAENLKLV 73
             AE ++++
Sbjct: 61 -LQAEEVEVI 69


>gi|288959216|ref|YP_003449557.1| cold shock protein [Azospirillum sp. B510]
 gi|288911524|dbj|BAI73013.1| cold shock protein [Azospirillum sp. B510]
          Length = 186

 Score = 83.5 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW+N DKG+GFITP   +  G DVF+H + +  +G+  L EG  V     Q     
Sbjct: 123 GTVKWFNADKGFGFITP---STGGKDVFVHVNVLRRSGMQTLQEGDQVRVTVRQGQKGP 178



 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            ++KW+NP KG+GF++PE   +   D FLH SAV +AG   L EG  +T D  +     
Sbjct: 21 TATVKWFNPTKGFGFVSPE---DGSPDAFLHVSAVQAAGYDALDEGTTITCDLARGPKGP 77

Query: 64 KYS 66
          + +
Sbjct: 78 QVA 80


>gi|83814746|ref|YP_445845.1| hypothetical protein SRU_1727 [Salinibacter ruber DSM 13855]
 gi|294507754|ref|YP_003571812.1| cold shock-like protein [Salinibacter ruber M8]
 gi|83756140|gb|ABC44253.1| conserved domain protein [Salinibacter ruber DSM 13855]
 gi|294344082|emb|CBH24860.1| cold shock-like protein [Salinibacter ruber M8]
          Length = 71

 Score = 83.5 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G++KW++ +KGYGFI  E   E   D+F+H S + + G  +L E   V +     D 
Sbjct: 4  RETGTVKWFSNEKGYGFIVAEDRDE---DLFVHYSEIDTEGFKSLDEDDRVEFTVGHTDK 60

Query: 62 NGKYSAENLKLV 73
              +A+++ ++
Sbjct: 61 G--PNAQDVVVI 70


>gi|329941396|ref|ZP_08290675.1| cold shock protein B [Streptomyces griseoaurantiacus M045]
 gi|329299927|gb|EGG43826.1| cold shock protein B [Streptomyces griseoaurantiacus M045]
          Length = 127

 Score = 83.5 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V  AG+  L  GQ V +  V    
Sbjct: 1  MPTGKVKWFNGEKGFGFLSRD----DGGDVFVH-SSVLPAGVDALKPGQRVEFGVV-AGQ 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  +   + L P  S
Sbjct: 55 RGDQALSVVLLEPAPS 70


>gi|54295674|ref|YP_128089.1| hypothetical protein lpl2762 [Legionella pneumophila str. Lens]
 gi|296108496|ref|YP_003620197.1| Hypothetical Cold shock protein [Legionella pneumophila 2300/99
          Alcoy]
 gi|53755506|emb|CAH17005.1| hypothetical protein lpl2762 [Legionella pneumophila str. Lens]
 gi|295650398|gb|ADG26245.1| Hypothetical Cold shock protein [Legionella pneumophila 2300/99
          Alcoy]
 gi|307611722|emb|CBX01423.1| hypothetical protein LPW_31131 [Legionella pneumophila 130b]
          Length = 71

 Score = 83.5 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDA 61
            G +KW+N DKGYGFI+ +   +   DVF+H  ++  SAG   L EGQ V +  V   A
Sbjct: 5  ETGHVKWFNDDKGYGFISRDNGQD---DVFVHFRSIVSSAGRKTLLEGQRVEF-LVTKGA 60

Query: 62 NGKYSAENLKL 72
           G  + E   +
Sbjct: 61 KGLQAEEVTAI 71


>gi|49082320|gb|AAT50560.1| PA0961 [synthetic construct]
          Length = 64

 Score = 83.5 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GFI+ +    SG+D+F+H  A+   G   L EGQ V +  VQ D      
Sbjct: 1  MKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDKG--LQ 54

Query: 67 AENL 70
          AE++
Sbjct: 55 AEDV 58


>gi|52841294|ref|YP_095093.1| cold shock domain-contain protein [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|52628405|gb|AAU27146.1| cold shock domain family protein [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
          Length = 87

 Score = 83.5 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N DKG+GFI       SG D F+H S++ S G   L +G  V +   +     
Sbjct: 20 RGKVKWFNKDKGFGFIE-----SSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKG- 73

Query: 64 KYSAENLKLVP 74
             AE ++++ 
Sbjct: 74 -PQAEEVEVIK 83


>gi|307327750|ref|ZP_07606934.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306886648|gb|EFN17650.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 127

 Score = 83.5 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GF++ +     G DVF+H S+V   G+  L  GQ V +  V  + 
Sbjct: 1  MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPEGVDALKPGQRVEFGVVAGNR 55

Query: 62 NGKYSAENLKLVPKS 76
               A ++ ++  +
Sbjct: 56 G--DQALSVTVLDPT 68


>gi|52843046|ref|YP_096845.1| cold shock transcriptional regulator CspA [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
 gi|52630157|gb|AAU28898.1| cold shock transcriptional regulator CspA [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
          Length = 71

 Score = 83.5 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQNDA 61
            G +KW+N DKGYGFI+ +   +   DVF+H  ++ S AG   L EGQ V +  V   A
Sbjct: 5  ETGHVKWFNDDKGYGFISRDNGQD---DVFVHFRSIVSNAGRKTLLEGQRVEF-LVTKGA 60

Query: 62 NGKYSAENLKL 72
           G  + E   +
Sbjct: 61 KGLQAEEVTAI 71


>gi|317154064|ref|YP_004122112.1| Cold-shock protein DNA-binding protein [Desulfovibrio aespoeensis
          Aspo-2]
 gi|316944315|gb|ADU63366.1| Cold-shock protein DNA-binding protein [Desulfovibrio aespoeensis
          Aspo-2]
          Length = 76

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G + W+N  KG+GFIT +     G DVF+H + +   G  +L  G+ V+Y     +
Sbjct: 1  MRREGKVTWFNDKKGFGFITGD----DGLDVFVHYTEIVRDGFQSLEPGERVSYAVTDEE 56

Query: 61 ANGKYSAENLKLVPKSS 77
             K  A ++ L  + +
Sbjct: 57 IAPK--AVDVHLADEGA 71


>gi|71983225|ref|NP_492281.2| abnormal cell LINeage family member (lin-28) [Caenorhabditis
          elegans]
 gi|6434276|emb|CAB61009.1| C. elegans protein F02E9.2b, confirmed by transcript evidence
          [Caenorhabditis elegans]
          Length = 196

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS KW+N  KGYGF+  + +   G+D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 24 GSCKWFNVSKGYGFVIDDIT---GEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 79


>gi|54298841|ref|YP_125210.1| hypothetical protein lpp2908 [Legionella pneumophila str. Paris]
 gi|53752626|emb|CAH14061.1| hypothetical protein lpp2908 [Legionella pneumophila str. Paris]
          Length = 71

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDA 61
            G +KW+N DKGYGFI+ +   +   DVF+H  ++  SAG   L EGQ V +  V   A
Sbjct: 5  ETGHVKWFNDDKGYGFISRDNGQD---DVFVHFRSIVSSAGRKTLVEGQRVEF-LVTKGA 60

Query: 62 NGKYSAENLKL 72
           G  + E   +
Sbjct: 61 KGLQAEEVTAI 71


>gi|118589651|ref|ZP_01547056.1| Cold-shock DNA-binding domain protein [Stappia aggregata IAM
          12614]
 gi|118437737|gb|EAV44373.1| Cold-shock DNA-binding domain protein [Stappia aggregata IAM
          12614]
          Length = 66

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++  +G G I P    + G+D+ +  SA+  +G+  LTEGQLV +D      
Sbjct: 1  MLHGNVKWFDNRRGIGTIEP----QDGEDILVDISALRRSGIDTLTEGQLVAFDLEW--R 54

Query: 62 NGKYSAENLKLV 73
           G+  AE+LK++
Sbjct: 55 RGQMVAEDLKVL 66


>gi|71983217|ref|NP_001021085.1| abnormal cell LINeage family member (lin-28) [Caenorhabditis
           elegans]
 gi|74961916|sp|P92186|LIN28_CAEEL RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage
           protein 28
 gi|1763342|gb|AAB49759.1| Lin-28 [Caenorhabditis elegans]
 gi|1763344|gb|AAC47476.1| LIN-28 [Caenorhabditis elegans]
 gi|6434275|emb|CAB61008.1| C. elegans protein F02E9.2a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 227

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS KW+N  KGYGF+  + +   G+D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 55  GSCKWFNVSKGYGFVIDDIT---GEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110


>gi|199598150|ref|ZP_03211572.1| Cold shock protein [Lactobacillus rhamnosus HN001]
 gi|258508287|ref|YP_003171038.1| cold shock protein [Lactobacillus rhamnosus GG]
 gi|258539501|ref|YP_003174000.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
 gi|199590911|gb|EDY98995.1| Cold shock protein [Lactobacillus rhamnosus HN001]
 gi|257148214|emb|CAR87187.1| Cold shock protein [Lactobacillus rhamnosus GG]
 gi|257151177|emb|CAR90149.1| Cold shock protein [Lactobacillus rhamnosus Lc 705]
 gi|259649604|dbj|BAI41766.1| cold shock protein [Lactobacillus rhamnosus GG]
          Length = 74

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K +N DKGYGFI  EG      D+F+H SA+  +G  +LT G+ V +  V+    G
Sbjct: 2  QGRVKNFNVDKGYGFIEAEGQ----PDIFVHFSAINESGFKSLTPGEQVDFVIVEG-PRG 56

Query: 64 KYSAEN 69
            +A  
Sbjct: 57 PQAANV 62


>gi|134097204|ref|YP_001102865.1| cold-shock DNA-binding domain-containing protein
          [Saccharopolyspora erythraea NRRL 2338]
 gi|291005339|ref|ZP_06563312.1| cold shock protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133909827|emb|CAL99939.1| cold-shock DNA-binding domain protein [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 130

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ +KG+GF+T +     G+DV++  SA+  +G+ +L  GQ V +D  Q   
Sbjct: 1  MPTGRVKWFDAEKGFGFVTQD----GGEDVYVRASAL-PSGVESLKTGQRVDFDMAQG-R 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  + +   L P  S
Sbjct: 55 RGPQALKVQLLDPPPS 70


>gi|167753531|ref|ZP_02425658.1| hypothetical protein ALIPUT_01806 [Alistipes putredinis DSM
          17216]
 gi|167658156|gb|EDS02286.1| hypothetical protein ALIPUT_01806 [Alistipes putredinis DSM
          17216]
          Length = 66

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KGYGFIT E     G +VF+H S + S     L EGQ V ++   N A G
Sbjct: 2  TGQVKWFDSKKGYGFITRE----DGKEVFVHFSGIVSDSFKTLNEGQKVAFELG-NGAKG 56

Query: 64 KYSAENLKLVP 74
             A N+ ++ 
Sbjct: 57 -EQAINVTVIE 66


>gi|254458182|ref|ZP_05071608.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales
          bacterium GD 1]
 gi|207085018|gb|EDZ62304.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales
          bacterium GD 1]
          Length = 72

 Score = 82.7 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 7/71 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA--SAGLFNLTEGQLVTYDYVQNDAN 62
          GS+KW+N +KGYGFI  +     G DVF+H   V     G  +L EGQ VTY+  +    
Sbjct: 7  GSVKWFNEEKGYGFIQQD---NGGQDVFVHFRQVNHTGGGRVSLAEGQKVTYEVGEGQKG 63

Query: 63 GKYSAENLKLV 73
              AEN+  +
Sbjct: 64 --PQAENVTPL 72


>gi|268568282|ref|XP_002640209.1| C. briggsae CBR-LIN-28 protein [Caenorhabditis briggsae]
          Length = 219

 Score = 82.7 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS KW+N  KGYGF+  +    +G+D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 55  GSCKWFNVSKGYGFVIDD---NTGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110


>gi|219855908|ref|YP_002473030.1| hypothetical protein CKR_2565 [Clostridium kluyveri NBRC 12016]
 gi|219569632|dbj|BAH07616.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 66

 Score = 82.7 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          ++  G++KW+N +KG+G IT     E G D+F H S + S G   L EGQ V++D
Sbjct: 15 LIWTGTVKWFNGNKGFGSIT----GEDGKDIFAHFSQINSEGYKTLGEGQKVSFD 65


>gi|71083183|ref|YP_265902.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762387|ref|ZP_01264352.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062296|gb|AAZ21299.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718189|gb|EAS84839.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1002]
          Length = 70

 Score = 82.7 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG+GFI  E       D F+H SAV +AG+  L EG  + ++  ++   G
Sbjct: 5  KGTVKWFNGKKGFGFIEREDKE---KDAFVHASAVKTAGMRFLNEGDKLEFEM-EDGPKG 60

Query: 64 KYSAENLKLV 73
            SA NLK +
Sbjct: 61 P-SAVNLKKI 69


>gi|326692723|ref|ZP_08229728.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc
          argentinum KCTC 3773]
          Length = 74

 Score = 82.7 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K +  ++GYG+ITP+   E G DV++H + +   G  +L +G+ V+Y  VQ   
Sbjct: 1  MKTGTVKIWQKERGYGYITPD---EGGADVYVHFNGIDMDGFKSLNQGERVSYVLVQGYK 57

Query: 62 NGKYSAENLKLVPKSSN 78
          +   +AE   ++ K+S 
Sbjct: 58 D-YQAAEVRPIMKKASE 73


>gi|295110047|emb|CBL24000.1| cold-shock DNA-binding protein family [Ruminococcus obeum A2-162]
          Length = 75

 Score = 82.7 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
          ++KW++  KGYGFIT     E G D F H S +   G   L+ GQ V ++    DANG+ 
Sbjct: 8  TVKWFSAQKGYGFIT----GEDGIDYFAHFSEIQMDGYRKLSGGQPVLFEAG-TDANGRS 62

Query: 66 SAENLKLVPKSSN 78
           A+N+     ++ 
Sbjct: 63 LAKNISPADPNAE 75


>gi|172055299|ref|YP_001806626.1| putative cold shock protein, DNA-binding [Cyanothece sp. ATCC
          51142]
 gi|171701580|gb|ACB54560.1| putative cold shock protein, DNA-binding [Cyanothece sp. ATCC
          51142]
          Length = 64

 Score = 82.7 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW++  KGYGFI      + G+D+F+H S V S    +L EGQ V Y+  Q   
Sbjct: 1  MAQGQVKWFDTQKGYGFIAQ---QDGGEDLFVHYSEVQSQ---SLEEGQTVEYEVGQGRK 54

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 55 G--PCAVNVRTI 64


>gi|301061696|ref|ZP_07202437.1| cold shock protein CspD [delta proteobacterium NaphS2]
 gi|300444156|gb|EFK08180.1| cold shock protein CspD [delta proteobacterium NaphS2]
          Length = 62

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          KW++  KG+GFI+ E     G D+F+H + +   G   L+EG  V+++  ++D  G  + 
Sbjct: 3  KWFSDRKGFGFISQE----DGQDLFVHHTGIDMPGFKTLSEGDRVSFEIEESD-RGPKAK 57

Query: 68 ENLKL 72
            +KL
Sbjct: 58 NVVKL 62


>gi|154244150|ref|YP_001415108.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154158235|gb|ABS65451.1| putative cold-shock DNA-binding domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 241

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KWYNPDKG+GFI  EG    G DVF+H + ++ +GL +L EGQ V     Q    G 
Sbjct: 177 GTVKWYNPDKGFGFIAVEG---GGKDVFVHVTVISRSGLTDLAEGQRVVVQVGQG-PKGP 232

Query: 65  YS 66
            +
Sbjct: 233 EA 234



 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+NP+KG+GF+      +   DVFLH  A+ +AG  ++  G  ++    Q    G+ 
Sbjct: 68  TVKWFNPEKGFGFVE---LADGSGDVFLHARALEAAGQESVPPGSKLSVRVGQGQ-KGRQ 123

Query: 66  SAENLKLVPKSSN 78
             E L++   ++ 
Sbjct: 124 VTEVLEVDTSTAE 136


>gi|323343048|ref|ZP_08083279.1| CspA family cold shock transcriptional regulator [Erysipelothrix
          rhusiopathiae ATCC 19414]
 gi|322463112|gb|EFY08307.1| CspA family cold shock transcriptional regulator [Erysipelothrix
          rhusiopathiae ATCC 19414]
          Length = 66

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N DKG+GFI     T+SG ++F+H S + S G   L +G +VT+D   +  
Sbjct: 1  MESGKVKFFNADKGFGFII----TDSGKEIFVHYSGIISDGFKTLNDGDVVTFDIESDTR 56

Query: 62 NGKYSAENLKL 72
            K  A N+K+
Sbjct: 57 GDK--AINVKV 65


>gi|74961778|sp|P91599|LIN28_CAERE RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage
           protein 28
 gi|1763346|gb|AAC47477.1| LIN-28 [Caenorhabditis remanei]
          Length = 214

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS KW+N  KGYGF+  + + E   D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 51  GSCKWFNVSKGYGFVIDDITRE---DLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 106


>gi|288962305|ref|YP_003452600.1| cold shock protein [Azospirillum sp. B510]
 gi|288914571|dbj|BAI76056.1| cold shock protein [Azospirillum sp. B510]
          Length = 203

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KG+GFI P   +  G D+F+H  A+  +G+  L +G  V     Q  A G 
Sbjct: 140 GTVKWFNVSKGFGFIAP---STGGKDIFVHIRALERSGISGLDDGAQVRVTIRQG-AKGP 195

Query: 65  YS 66
            +
Sbjct: 196 EA 197



 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          R ++KW+N  KG+GF+TP+   +   D FLH + +   G  +L EG  +T D  +    G
Sbjct: 21 RATVKWFNATKGFGFVTPD---DGSPDAFLHSTVLQFCGHDSLPEGATITCDLSRG-PKG 76

Query: 64 KYSA 67
             A
Sbjct: 77 PQVA 80


>gi|254496781|ref|ZP_05109636.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
 gi|254354006|gb|EET12686.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
          Length = 68

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N  KG+GFI       SG D F+H SA+ S+G   L EG  V +   +     
Sbjct: 6  RGKVKWFNESKGFGFIE-----NSGKDYFVHFSAIQSSGFKTLPEGANVLFKAGKGQKG- 59

Query: 64 KYSAENLKLV 73
             AE ++L+
Sbjct: 60 -PQAEEVELI 68


>gi|83814543|ref|YP_446197.1| hypothetical protein SRU_2091 [Salinibacter ruber DSM 13855]
 gi|294508125|ref|YP_003572183.1| cold shock-like protein [Salinibacter ruber M8]
 gi|83755937|gb|ABC44050.1| conserved domain protein [Salinibacter ruber DSM 13855]
 gi|294344453|emb|CBH25231.1| putative cold shock-like protein [Salinibacter ruber M8]
          Length = 110

 Score = 81.9 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
          +   ++KW++  KGYGFI      + G+DVF+H S + S      L   Q V ++   + 
Sbjct: 1  MRTSTVKWFDAKKGYGFI---HHPDDGEDVFVHYSNIQSDDDFKTLKSDQHVRFEM-NDG 56

Query: 61 ANGKYSAENLKLVPKSS 77
            G ++ E   L  + +
Sbjct: 57 PKGLHALEVAPLDDEEA 73


>gi|42560588|ref|NP_975039.1| cold shock protein [Mycoplasma mycoides subsp. mycoides SC str.
          PG1]
 gi|42492084|emb|CAE76681.1| COLD SHOCK PROTEIN [Mycoplasma mycoides subsp. mycoides SC str.
          PG1]
          Length = 69

 Score = 81.9 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G +KW+N +KG+GFIT +       DVF++ S +   G   L +GQ VTY+  +   
Sbjct: 1  MNTGIVKWFNDEKGFGFITNDS---DNKDVFVYYSNINVNGYKALEQGQKVTYELNKGIK 57

Query: 62 NGKYSAENLKL 72
               A N+ +
Sbjct: 58 G--LEAFNVSI 66


>gi|193214431|ref|YP_001995630.1| cold-shock DNA-binding domain-containing protein [Chloroherpeton
          thalassium ATCC 35110]
 gi|193087908|gb|ACF13183.1| cold-shock DNA-binding domain protein [Chloroherpeton thalassium
          ATCC 35110]
          Length = 73

 Score = 81.9 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 6/76 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQN 59
          M HR ++KW++  KGYGFI    + E G+D+F+H SA++S      L +G  V ++ V  
Sbjct: 1  MAHRSNVKWFDGKKGYGFIV---NPEGGEDIFVHYSAISSEKKYKMLDQGVEVEFELVTT 57

Query: 60 DANGKYSAENLKLVPK 75
          D      A+N++ + +
Sbjct: 58 DKG--LQAQNVREISE 71


>gi|251771202|gb|EES51783.1| putative cold-shock DNA-binding domain protein [Leptospirillum
          ferrodiazotrophum]
          Length = 320

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +K YNPDKGYG I      + G ++F+H SA+ + GL  L  GQ V ++      
Sbjct: 1  MPKGRVKAYNPDKGYGTI----LLDDGQEIFVHGSAIQTDGLKVLEAGQRVRFEIAMG-P 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 QGPLAANV 63


>gi|301066334|ref|YP_003788357.1| cold shock protein [Lactobacillus casei str. Zhang]
 gi|300438741|gb|ADK18507.1| Cold shock protein [Lactobacillus casei str. Zhang]
          Length = 73

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K +N DKGYGFI  EG      D+F+H SA+  +G  +LT G+ V +  V+    G
Sbjct: 2  QGRVKNFNVDKGYGFIEAEGQ----PDIFVHFSAINESGFKSLTPGETVDFVIVEG-PRG 56

Query: 64 KYSAEN 69
            +A  
Sbjct: 57 PQAANV 62


>gi|167626580|ref|YP_001677080.1| cold-shock DNA-binding domain-containing protein [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
 gi|241667137|ref|ZP_04754715.1| cold-shock DNA-binding domain-containing protein [Francisella
          philomiragia subsp. philomiragia ATCC 25015]
 gi|254875691|ref|ZP_05248401.1| cold shock protein [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
 gi|167596581|gb|ABZ86579.1| putative cold-shock DNA-binding domain protein [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
 gi|254841712|gb|EET20126.1| cold shock protein [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
          Length = 67

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KG+GFITPE     G DVF+H S +       L EGQ VT++  Q    G
Sbjct: 6  QGTVKFFNDQKGFGFITPE---NGGKDVFVHISKLNGE---TLAEGQQVTFE-TQEGRKG 58

Query: 64 KYSAENLKLV 73
             A N++++
Sbjct: 59 PE-AINIEVL 67


>gi|116248183|sp|Q61CX7|LIN28_CAEBR RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage
           protein 28
 gi|309371318|emb|CAP31656.3| CBR-LIN-28 protein [Caenorhabditis briggsae AF16]
          Length = 237

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS KW+N  KGYGF+  +    +G+D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 55  GSCKWFNVSKGYGFVIDD---NTGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110


>gi|158425669|ref|YP_001526961.1| cold shock protein [Azorhizobium caulinodans ORS 571]
 gi|158332558|dbj|BAF90043.1| cold shock protein [Azorhizobium caulinodans ORS 571]
          Length = 237

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KWYNP+KG+GFI  EG    G DVF+H + V+ +GL +L+EGQ V     Q    G 
Sbjct: 173 GTVKWYNPEKGFGFIAVEG---GGKDVFVHVTVVSRSGLADLSEGQRVVVQVGQG-PKGP 228

Query: 65  YS 66
            +
Sbjct: 229 EA 230



 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+NP+KG+GF+     ++   DVFLH  A+ +AG  ++  G  ++    Q    G+ 
Sbjct: 69  TVKWFNPEKGFGFVE---LSDGSGDVFLHARALEAAGQESVPPGSKLSVRVGQGQ-KGRQ 124

Query: 66  SAENLKLVPKSSN 78
             E L++   ++ 
Sbjct: 125 VTEVLEVDTSTAE 137


>gi|322832238|ref|YP_004212265.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
 gi|321167439|gb|ADW73138.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602]
          Length = 70

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G +KWYN  KGYGFI P    +   ++++ R+++A+ G  +L+ GQ V +   ++ 
Sbjct: 2  MLKMGLVKWYNQAKGYGFICP---LDGSSEIYVQRTSIANTGNKSLSAGQKVEFTTYRSV 58

Query: 61 ANGKYSAENL 70
           +G  +A+ +
Sbjct: 59 THGPSAADVI 68


>gi|320095150|ref|ZP_08026858.1| cold shock domain protein CspD [Actinomyces sp. oral taxon 178
          str. F0338]
 gi|319977932|gb|EFW09567.1| cold shock domain protein CspD [Actinomyces sp. oral taxon 178
          str. F0338]
          Length = 69

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
          +  G +KW+N  KG+GFI P+  T    DVF+H S++   +G   L EG  V Y  V+  
Sbjct: 1  MASGHVKWFNDAKGFGFIIPDDQT---GDVFVHFSSIVGQSGRRTLQEGDKVDYVAVEG- 56

Query: 61 ANGKYSAENLKLV 73
            G ++ E  ++V
Sbjct: 57 PRGLHAEEVSRVV 69


>gi|270157314|ref|ZP_06185971.1| cold shock protein CspB [Legionella longbeachae D-4968]
 gi|289164302|ref|YP_003454440.1| stress protein, member of the CspA-family [Legionella longbeachae
          NSW150]
 gi|269989339|gb|EEZ95593.1| cold shock protein CspB [Legionella longbeachae D-4968]
 gi|288857475|emb|CBJ11305.1| stress protein, member of the CspA-family [Legionella longbeachae
          NSW150]
          Length = 68

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N  KG+GFI       SG D F+H SA+ S+G  +L EG  V +   +     
Sbjct: 6  RGKVKWFNESKGFGFIE-----NSGKDYFVHFSAIQSSGFKSLPEGANVLFKAGKGQKG- 59

Query: 64 KYSAENLKLV 73
             AE ++L+
Sbjct: 60 -PQAEEIELI 68


>gi|239980769|ref|ZP_04703293.1| cold-shock domain-containing protein [Streptomyces albus J1074]
 gi|291452626|ref|ZP_06592016.1| cold-shock domain-containing protein [Streptomyces albus J1074]
 gi|291355575|gb|EFE82477.1| cold-shock domain-containing protein [Streptomyces albus J1074]
          Length = 67

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++P +G+GFIT +G    G DVF H S +A+     L EGQ VT+D V +  
Sbjct: 1  MASGTVKWFHPARGFGFITQDG---GGADVFAHFSNIAAQDSLELLEGQKVTFDIVMSPK 57

Query: 62 NGKYSAENL 70
              +AEN+
Sbjct: 58 G--PTAENI 64


>gi|145356187|ref|XP_001422318.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582559|gb|ABP00635.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 76

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N  KG+GFITP    +  +++F+H++ ++ AG  +  E + V Y+   ++A+G
Sbjct: 1  RGKVKWFNVTKGFGFITPH---DGSEEIFVHQTGISRAGFRSAWEDEEVEYEV--SNADG 55

Query: 64 KYSAENLK 71
          +  A N+ 
Sbjct: 56 RPVAVNVT 63


>gi|300787569|ref|YP_003767860.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
 gi|299797083|gb|ADJ47458.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
          Length = 315

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
          + +G+++W++ ++G+GF+ PE   +   DVF+H S +    G   L EGQ V ++  +ND
Sbjct: 1  MPQGTVRWFDAERGFGFLAPE---DDSPDVFVHASEIVGDGGAKVLREGQAVVFEVGEND 57

Query: 61 ANGKYSAENLKLVPKSS 77
                A  +++   ++
Sbjct: 58 RG--PQALRVRVTADAA 72



 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 6/68 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G+I WY P KGYGF +P+G    G D+F+H SA+ + G+    EGQ V +  V+ +  G 
Sbjct: 81  GTINWYEPGKGYGFASPDG---GGADIFVHSSAIVTGGVVT--EGQRVAFLIVEGE-RGP 134

Query: 65  YSAENLKL 72
            +   + L
Sbjct: 135 QAGHVIPL 142



 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++ WY+ DKG+GFI P+       DVF+H  A+A  GL  L EG  V Y+    D     
Sbjct: 161 TVAWYDEDKGFGFINPDS---GAGDVFVHARALA-EGLTWLAEGDRVAYEVASGDKG--P 214

Query: 66  SAENLKLV 73
            A ++ LV
Sbjct: 215 QARDVHLV 222



 Score = 54.2 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +  Y+ D+G+GFITP+     GDD+F H S +  +    L +G  V Y   Q+D   
Sbjct: 253 EGVVARYDGDRGFGFITPDA---GGDDLFAHASVIMGS--EPLQKGDRVRYAVRQSDRGP 307

Query: 64  K 64
           +
Sbjct: 308 Q 308


>gi|227487248|ref|ZP_03917564.1| CspA family cold shock transcriptional regulator [Corynebacterium
          glucuronolyticum ATCC 51867]
 gi|227541584|ref|ZP_03971633.1| CspA family cold shock transcriptional regulator [Corynebacterium
          glucuronolyticum ATCC 51866]
 gi|227092906|gb|EEI28218.1| CspA family cold shock transcriptional regulator [Corynebacterium
          glucuronolyticum ATCC 51867]
 gi|227182552|gb|EEI63524.1| CspA family cold shock transcriptional regulator [Corynebacterium
          glucuronolyticum ATCC 51866]
          Length = 67

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G+++W+NP+ GYGFI  +   ESG D+F+  S +  AG   L E Q V Y  ++   
Sbjct: 1  MAQGTVRWFNPESGYGFIIDD---ESGQDLFVRYSDIEGAGFRTLQENQRVDYFVMEGPK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|56707540|ref|YP_169436.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU
          S4]
 gi|89255867|ref|YP_513229.1| cold shock protein [Francisella tularensis subsp. holarctica LVS]
 gi|110670011|ref|YP_666568.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC198]
 gi|115314356|ref|YP_763079.1| cold shock protein [Francisella tularensis subsp. holarctica
          OSU18]
 gi|118497088|ref|YP_898138.1| cold shock protein [Francisella tularensis subsp. novicida U112]
 gi|134302526|ref|YP_001122496.1| cold shock protein [Francisella tularensis subsp. tularensis
          WY96-3418]
 gi|156501851|ref|YP_001427916.1| cold-shock DNA-binding domain-containing protein [Francisella
          tularensis subsp. holarctica FTNF002-00]
 gi|167010093|ref|ZP_02275024.1| hypothetical protein Ftulh_05064 [Francisella tularensis subsp.
          holarctica FSC200]
 gi|187931344|ref|YP_001891328.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|194323385|ref|ZP_03057162.1| cold-shock' DNA-binding domain, putative [Francisella tularensis
          subsp. novicida FTE]
 gi|208778881|ref|ZP_03246227.1| cold-shock' DNA-binding domain protein, putative [Francisella
          novicida FTG]
 gi|224456609|ref|ZP_03665082.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|254367231|ref|ZP_04983259.1| cold shock protein [Francisella tularensis subsp. holarctica 257]
 gi|254368706|ref|ZP_04984719.1| cold shock protein [Francisella tularensis subsp. holarctica
          FSC022]
 gi|254370063|ref|ZP_04986069.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254372452|ref|ZP_04987941.1| hypothetical protein FTCG_00012 [Francisella tularensis subsp.
          novicida GA99-3549]
 gi|254373914|ref|ZP_04989396.1| cold shock DNA binding protein [Francisella novicida GA99-3548]
 gi|254874358|ref|ZP_05247068.1| cold shock protein cspC [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|290953337|ref|ZP_06557958.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          holarctica URFT1]
 gi|295313426|ref|ZP_06804032.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          holarctica URFT1]
 gi|56604032|emb|CAG45024.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU
          S4]
 gi|89143698|emb|CAJ78897.1| cold shock protein [Francisella tularensis subsp. holarctica LVS]
 gi|110320344|emb|CAL08407.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC198]
 gi|115129255|gb|ABI82442.1| cold shock protein [Francisella tularensis subsp. holarctica
          OSU18]
 gi|118422994|gb|ABK89384.1| cold shock protein, DNA-binding [Francisella novicida U112]
 gi|134050303|gb|ABO47374.1| cold shock DNA binding protein [Francisella tularensis subsp.
          tularensis WY96-3418]
 gi|134253049|gb|EBA52143.1| cold shock protein [Francisella tularensis subsp. holarctica 257]
 gi|151568307|gb|EDN33961.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|151570179|gb|EDN35833.1| hypothetical protein FTCG_00012 [Francisella novicida GA99-3549]
 gi|151571634|gb|EDN37288.1| cold shock DNA binding protein [Francisella novicida GA99-3548]
 gi|156252454|gb|ABU60960.1| 'Cold-shock' DNA-binding domain protein [Francisella tularensis
          subsp. holarctica FTNF002-00]
 gi|157121627|gb|EDO65797.1| cold shock protein [Francisella tularensis subsp. holarctica
          FSC022]
 gi|187712253|gb|ACD30550.1| cold shock protein, DNA-binding [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|194322240|gb|EDX19721.1| cold-shock' DNA-binding domain, putative [Francisella tularensis
          subsp. novicida FTE]
 gi|208744681|gb|EDZ90979.1| cold-shock' DNA-binding domain protein, putative [Francisella
          novicida FTG]
 gi|254840357|gb|EET18793.1| cold shock protein cspC [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|282158694|gb|ADA78085.1| hypothetical protein NE061598_02185 [Francisella tularensis
          subsp. tularensis NE061598]
 gi|328675625|gb|AEB28300.1| Cold shock protein CspA [Francisella cf. novicida 3523]
 gi|328676549|gb|AEB27419.1| Cold shock protein CspA [Francisella cf. novicida Fx1]
          Length = 67

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KG+GFITPE     G DVF+H S +       L EGQ VT++  Q    G
Sbjct: 6  QGTVKFFNEQKGFGFITPE---NGGKDVFVHISKLNGE---TLAEGQQVTFE-TQEGRKG 58

Query: 64 KYSAENLKLV 73
             A N++++
Sbjct: 59 PE-AINIEVL 67


>gi|154248094|ref|YP_001419052.1| cold-shock DNA-binding domain-containing protein [Xanthobacter
          autotrophicus Py2]
 gi|154162179|gb|ABS69395.1| putative cold-shock DNA-binding domain protein [Xanthobacter
          autotrophicus Py2]
          Length = 192

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           GSIKW++  KGYGFI P+   + G DV +H + +   G     EG  V  + VQ  A G
Sbjct: 30 TGSIKWFDASKGYGFIVPD---DGGPDVLVHVTCLRRDGFQTAMEGARVVCEAVQR-AKG 85

Query: 64 KYSAENLKL 72
          + +   L L
Sbjct: 86 RQAFRVLSL 94



 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N  +G+GF+T     +   D+F+H   +   GL  L  GQ V   Y   D  G  
Sbjct: 123 TVKWFNRLRGFGFLTQ---GDGTPDIFVHMETLRRHGLTELRPGQTVMVRYGDGD-KGLM 178

Query: 66  SAEN 69
           +AE 
Sbjct: 179 AAEV 182


>gi|52841437|ref|YP_095236.1| cold shock domain-contain protein CspA [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
 gi|52628548|gb|AAU27289.1| cold shock domain family protein CspA [Legionella pneumophila
          subsp. pneumophila str. Philadelphia 1]
          Length = 79

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N  KG+GFI      + G+D+F+H   +   G   L E   VT++  +   
Sbjct: 6  RETGHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPK 61

Query: 62 NGKYSAENLKLVPKS 76
               A+N+ +  +S
Sbjct: 62 G--LKAQNVVVASES 74


>gi|262276771|ref|ZP_06054564.1| conserved domain protein [alpha proteobacterium HIMB114]
 gi|262223874|gb|EEY74333.1| conserved domain protein [alpha proteobacterium HIMB114]
          Length = 68

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N  KGYGFI  E       DVF+H SAV  +G+  L EG  +T++  +  
Sbjct: 1  MSIKGKVKWFNGTKGYGFIEREDKE---KDVFVHMSAVKDSGVGYLDEGDSLTFEIEEGK 57

Query: 61 ANGKYSAENLK 71
               SA NLK
Sbjct: 58 KG--PSAVNLK 66


>gi|116511520|ref|YP_808736.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
          subsp. cremoris SK11]
 gi|125624636|ref|YP_001033119.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|116107174|gb|ABJ72314.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
          cremoris SK11]
 gi|124493444|emb|CAL98418.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|300071427|gb|ADJ60827.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris
          NZ9000]
          Length = 66

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKGYGFI     TE   DVF +  ++   G     EGQ VT+D     A
Sbjct: 1  MINGTVKWFNMDKGYGFII----TEDMQDVFAYLLSIQGNGFKKYNEGQKVTFDVTMT-A 55

Query: 62 NGKYSAENLKL 72
           G+Y++   K+
Sbjct: 56 RGRYASNIHKV 66


>gi|269125076|ref|YP_003298446.1| cold-shock DNA-binding domain-containing protein [Thermomonospora
          curvata DSM 43183]
 gi|268310034|gb|ACY96408.1| cold-shock DNA-binding domain protein [Thermomonospora curvata
          DSM 43183]
          Length = 135

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+  KG+GF+T +     G +VF+H SA+  +G+ +L  GQ V +  V+   
Sbjct: 5  VPTGKVKWYDAGKGFGFLTRD----DGGEVFVHSSAL-PSGVTSLKTGQRVEFGVVEG-R 58

Query: 62 NGKYSAENLKLVP 74
           G+ +     L P
Sbjct: 59 RGQQALSVRTLDP 71


>gi|162452081|ref|YP_001614448.1| cold shock protein [Sorangium cellulosum 'So ce 56']
 gi|161162663|emb|CAN93968.1| cold shock protein [Sorangium cellulosum 'So ce 56']
          Length = 68

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFI  E     G DVF+H S +   G   L E + V ++  +   
Sbjct: 1  MAVGKVKWFNDEKGWGFIKQET----GPDVFVHYSQINGEGRRRLFEDETVEFEIKEGPK 56

Query: 62 NGKYSAENL 70
               A N+
Sbjct: 57 G--LQAVNV 63


>gi|328545164|ref|YP_004305273.1| cold shock-like transcription regulator protein [polymorphum
          gilvum SL003B-26A1]
 gi|326414906|gb|ADZ71969.1| Putative cold shock-like transcription regulator protein
          [Polymorphum gilvum SL003B-26A1]
          Length = 70

 Score = 81.2 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+IK++N D+G+GFITPE     G DVF+H SA   AGL    EG  VT+   ++D
Sbjct: 1  MRENGTIKFFNYDRGFGFITPE---NGGKDVFVHISAFEQAGLPAPEEGAKVTF-VAEDD 56

Query: 61 ANGK-YSAENLKL 72
            G+   A  L+L
Sbjct: 57 RRGRGKQAGQLEL 69


>gi|29377403|ref|NP_816557.1| cold-shock domain-contain protein [Enterococcus faecalis V583]
 gi|29344870|gb|AAO82627.1| cold-shock domain family protein [Enterococcus faecalis V583]
          Length = 67

 Score = 81.2 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K +N  +GYGFI      E G ++F+H++ +   G   L EGQ V Y+  + + 
Sbjct: 1  MKTGTVKSFNHKRGYGFII----AEDGSEIFVHQTGICMPGFRKLLEGQAVEYETAEYE- 55

Query: 62 NGKYSAENLKLVP 74
           G+  A N+ ++ 
Sbjct: 56 -GRTKAVNVTVIE 67


>gi|268315810|ref|YP_003289529.1| cold-shock DNA-binding domain-containing protein [Rhodothermus
          marinus DSM 4252]
 gi|262333344|gb|ACY47141.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM
          4252]
          Length = 95

 Score = 81.2 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
            RG +KW++  KGYGFI      E G D+F+H S + S      L  GQ+V ++  +  
Sbjct: 3  ARRGVVKWFDAKKGYGFII---HPEGGADIFVHYSQIISERRFKTLRTGQIVEFELHEGP 59

Query: 61 ANGKYSAENLKLVPK 75
                A N+  + +
Sbjct: 60 KG--LHARNVVPLDE 72


>gi|330813601|ref|YP_004357840.1| cold shock protein CspA [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486696|gb|AEA81101.1| cold shock protein CspA [Candidatus Pelagibacter sp. IMCC9063]
          Length = 68

 Score = 81.2 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N  KGYGFI  +       DVF+H SAV  +G+  L EG ++++D  ++ 
Sbjct: 1  MSIKGKVKWFNGSKGYGFIERDDKE---KDVFVHMSAVKDSGVDYLDEGDVLSFDI-EDG 56

Query: 61 ANGKYSAENLK 71
            G  SA NLK
Sbjct: 57 QKGP-SAVNLK 66


>gi|54023130|ref|YP_117372.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54014638|dbj|BAD56008.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 89

 Score = 81.2 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          + G++ W++  KG+GFI P         VF+  S++  +G   L EGQ V +      + 
Sbjct: 15 YHGTVAWFDAPKGFGFIEPAEGPRGP--VFVDFSSIEMSGYRTLVEGQPVRF----VRSA 68

Query: 63 GKYSAENLKLVPKSSN 78
          G+  A  ++ + ++ +
Sbjct: 69 GRAEAVAVRPLAETGS 84


>gi|116617815|ref|YP_818186.1| cold-shock DNA-binding protein family protein [Leuconostoc
          mesenteroides subsp. mesenteroides ATCC 8293]
 gi|227432308|ref|ZP_03914301.1| cold shock protein Csp [Leuconostoc mesenteroides subsp. cremoris
          ATCC 19254]
 gi|116096662|gb|ABJ61813.1| cold-shock DNA-binding protein family [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
 gi|227351914|gb|EEJ42147.1| cold shock protein Csp [Leuconostoc mesenteroides subsp. cremoris
          ATCC 19254]
          Length = 74

 Score = 81.2 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K +  ++GYG+ITP+   E GDDVF+H + +   G  +L +G+ V Y  VQ   
Sbjct: 1  MKTGTVKIWQKERGYGYITPD---EGGDDVFVHFNGIDMDGFKSLIQGEKVAYVLVQGYK 57

Query: 62 NGKYSAENLKLVPKSS 77
          +  Y A  ++ +   +
Sbjct: 58 S--YQAAQVRPLSVEA 71


>gi|172058435|ref|YP_001814895.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|171990956|gb|ACB61878.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum
          255-15]
          Length = 66

 Score = 81.2 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +KW+N +KGYGFI     T    DVF+H SA+ + G  +L EG+ V ++ V  D 
Sbjct: 1  MEQGKVKWFNAEKGYGFIE----TSDAKDVFVHFSAIQADGYKSLEEGEEVEFEIVDGD- 55

Query: 62 NGKYSAENLKL 72
           G  +A   KL
Sbjct: 56 RGPQAANVSKL 66


>gi|3850772|emb|CAA76694.1| cold shock protein A [Lactococcus lactis subsp. cremoris MG1363]
          Length = 66

 Score = 81.2 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N DKGYGFI     TE   DVF +  ++   G     EGQ VT+D     A
Sbjct: 1  MINGTVKWFNMDKGYGFII----TEDMQDVFAYLLSIQGNGFKKYNEGQKVTFDVTMT-A 55

Query: 62 NGKYSAENLKL 72
           G+Y++   K+
Sbjct: 56 RGRYASNIDKV 66


>gi|308504936|ref|XP_003114651.1| CRE-LIN-28 protein [Caenorhabditis remanei]
 gi|308258833|gb|EFP02786.1| CRE-LIN-28 protein [Caenorhabditis remanei]
          Length = 208

 Score = 81.2 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS KW+N  KGYGF+  + + E   D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 24 GSCKWFNVSKGYGFVIDDITRE---DLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 79


>gi|257126384|ref|YP_003164498.1| cold-shock DNA-binding domain protein [Leptotrichia buccalis
          C-1013-b]
 gi|257050323|gb|ACV39507.1| cold-shock DNA-binding domain protein [Leptotrichia buccalis
          C-1013-b]
          Length = 65

 Score = 81.2 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI+     E G+D FLH S +   G   + EG+ V++D V+    G 
Sbjct: 3  GKVKWFNDKKGFGFIS----GEDGNDYFLHFSKINKEGFKTVNEGEEVSFD-VEEGPKGP 57

Query: 65 YSAENLK 71
           +   + 
Sbjct: 58 QATNVIS 64


>gi|227535230|ref|ZP_03965279.1| cold shock protein CspA [Lactobacillus paracasei subsp. paracasei
          ATCC 25302]
 gi|239631631|ref|ZP_04674662.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
          subsp. paracasei 8700:2]
 gi|227187114|gb|EEI67181.1| cold shock protein CspA [Lactobacillus paracasei subsp. paracasei
          ATCC 25302]
 gi|239526096|gb|EEQ65097.1| cold-shock DNA-binding family protein [Lactobacillus paracasei
          subsp. paracasei 8700:2]
          Length = 73

 Score = 81.2 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K +N DKGYGFI  EG      D+F+H SA+   G  +LT G+ V +  V+    G
Sbjct: 2  QGRVKNFNVDKGYGFIEAEGQ----PDIFVHFSAINEPGFKSLTPGETVDFVIVEG-PRG 56

Query: 64 KYSAEN 69
            +A  
Sbjct: 57 PQAANV 62


>gi|52843021|ref|YP_096820.1| cold shock protein CspE [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|54295652|ref|YP_128067.1| hypothetical protein lpl2740 [Legionella pneumophila str. Lens]
 gi|54298813|ref|YP_125182.1| hypothetical protein lpp2878 [Legionella pneumophila str. Paris]
 gi|148361138|ref|YP_001252345.1| cold shock protein CspE [Legionella pneumophila str. Corby]
 gi|296108468|ref|YP_003620169.1| hypothetical protein lpa_04102 [Legionella pneumophila 2300/99
          Alcoy]
 gi|52630132|gb|AAU28873.1| cold shock protein CspE [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|53752598|emb|CAH14031.1| hypothetical protein lpp2878 [Legionella pneumophila str. Paris]
 gi|53755484|emb|CAH16983.1| hypothetical protein lpl2740 [Legionella pneumophila str. Lens]
 gi|148282911|gb|ABQ56999.1| cold shock protein CspE [Legionella pneumophila str. Corby]
 gi|295650370|gb|ADG26217.1| hypothetical protein lpa_04102 [Legionella pneumophila 2300/99
          Alcoy]
 gi|307611696|emb|CBX01390.1| hypothetical protein LPW_30821 [Legionella pneumophila 130b]
          Length = 68

 Score = 81.2 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW+N  KG+GF+        G D F+H SA+  +G   L EG  V +         
Sbjct: 6  RGTVKWFNESKGFGFLE-----SGGKDYFVHFSAIQGSGFKTLAEGATVMFKACNGQKG- 59

Query: 64 KYSAENLKLV 73
             AE +++V
Sbjct: 60 -PQAEEVEVV 68


>gi|1763348|gb|AAC47478.1| LIN-28 [Caenorhabditis remanei]
          Length = 239

 Score = 81.2 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS KW+N  KGYGF+  + + E   D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 55  GSCKWFNVSKGYGFVIDDITRE---DLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110


>gi|170596965|ref|XP_001902961.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi]
 gi|158589027|gb|EDP28189.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi]
          Length = 290

 Score = 81.2 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      ++GDD+F+H++AV        L +L +G+ V +D V+ 
Sbjct: 59  QGTVKWFNVKNGYGFI---NRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEG 115

Query: 60  DANGKYSAEN 69
              G  +A  
Sbjct: 116 Q-KGPEAANV 124


>gi|116494772|ref|YP_806506.1| cold shock protein [Lactobacillus casei ATCC 334]
 gi|191638285|ref|YP_001987451.1| Cold-shock protein [Lactobacillus casei BL23]
 gi|116104922|gb|ABJ70064.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC
          334]
 gi|190712587|emb|CAQ66593.1| Cold-shock protein [Lactobacillus casei BL23]
 gi|327385511|gb|AEA56985.1| Cold shock domain protein [Lactobacillus casei BD-II]
          Length = 73

 Score = 81.2 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K +N DKGYGFI  EG      D+F+H SA+   G  +LT G+ V +  V+    G
Sbjct: 2  QGRVKNFNVDKGYGFIEAEGQ----PDIFVHFSAINEPGFKSLTPGETVDFVIVEG-PRG 56

Query: 64 KYSAEN 69
            +A  
Sbjct: 57 PQAANV 62


>gi|7498486|pir||T20509 hypothetical protein F02E9.2a - Caenorhabditis elegans
          Length = 211

 Score = 81.2 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           GS KW+N  KGYGF+  + +   G+D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 55  GSCKWFNVSKGYGFVIDDIT---GEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110


>gi|187935705|ref|YP_001885709.1| hypothetical protein CLL_A1515 [Clostridium botulinum B str.
          Eklund 17B]
 gi|187723858|gb|ACD25079.1| conserved domain protein [Clostridium botulinum B str. Eklund
          17B]
          Length = 69

 Score = 81.2 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
           G +KW+N +KGYGFI    S + GDDVF H S +   G   +L EG+ VT+D  Q+   
Sbjct: 5  TGIVKWFNAEKGYGFI----SCDEGDDVFAHHSQIKENGPEKDLHEGESVTFDI-QDGEK 59

Query: 63 GKYSAENLKLV 73
          G   A N++ +
Sbjct: 60 GPM-ATNIQKL 69


>gi|254498496|ref|ZP_05111222.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
 gi|254352272|gb|EET11081.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
          Length = 68

 Score = 80.8 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI       SG D F+H SA+ S G   L EG  V +   +      
Sbjct: 7  GKVKWFNEGKGFGFIE-----SSGKDYFVHFSAIQSNGFKTLPEGAKVLFKMSKGQKG-- 59

Query: 65 YSAENLKLV 73
            AE ++L+
Sbjct: 60 LQAEEVELI 68


>gi|54297162|ref|YP_123531.1| hypothetical protein lpp1207 [Legionella pneumophila str. Paris]
 gi|148358792|ref|YP_001249999.1| cold shock domain family transporter protein CspA [Legionella
          pneumophila str. Corby]
 gi|296106837|ref|YP_003618537.1| cold shock domain family protein CspA [Legionella pneumophila
          2300/99 Alcoy]
 gi|53750947|emb|CAH12358.1| hypothetical protein lpp1207 [Legionella pneumophila str. Paris]
 gi|148280565|gb|ABQ54653.1| cold shock domain family protein CspA [Legionella pneumophila
          str. Corby]
 gi|295648738|gb|ADG24585.1| cold shock domain family protein CspA [Legionella pneumophila
          2300/99 Alcoy]
 gi|307609962|emb|CBW99490.1| hypothetical protein LPW_12631 [Legionella pneumophila 130b]
          Length = 77

 Score = 80.8 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N  KG+GFI      + G+D+F+H   +   G   L E   VT++  +   
Sbjct: 4  RETGHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPK 59

Query: 62 NGKYSAENLKLVPKS 76
               A+N+ +  +S
Sbjct: 60 G--LKAQNVVVASES 72


>gi|54294149|ref|YP_126564.1| hypothetical protein lpl1213 [Legionella pneumophila str. Lens]
 gi|53753981|emb|CAH15452.1| hypothetical protein lpl1213 [Legionella pneumophila str. Lens]
          Length = 77

 Score = 80.8 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N  KG+GFI      + G+D+F+H   +   G   L E   VT++  +   
Sbjct: 4  RETGHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPK 59

Query: 62 NGKYSAENLKLVPKS 76
               A+N+ +  +S
Sbjct: 60 G--LKAQNVVVASES 72


>gi|156972845|ref|YP_001443752.1| cold shock protein [Vibrio harveyi ATCC BAA-1116]
 gi|156524439|gb|ABU69525.1| hypothetical protein VIBHAR_00522 [Vibrio harveyi ATCC BAA-1116]
          Length = 69

 Score = 80.8 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW+N  KG+GFI+      +G+D+F+H   +   G   L EG  V++   +      
Sbjct: 7  GTVKWFNEAKGFGFISQ----ANGNDLFVHFRNILGDGFKKLIEGDQVSFTVGKGPKG-- 60

Query: 65 YSAENLKLV 73
            AEN+  +
Sbjct: 61 LQAENVTTI 69


>gi|7498487|pir||T20510 hypothetical protein F02E9.2b - Caenorhabditis elegans
          Length = 180

 Score = 80.8 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          GS KW+N  KGYGF+  + +   G+D+F+H+S +   G  +L EG+ V+Y Y+Q  +NGK
Sbjct: 24 GSCKWFNVSKGYGFVIDDIT---GEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 79


>gi|87121680|ref|ZP_01077567.1| Cold-shock protein, DNA-binding [Marinomonas sp. MED121]
 gi|86162931|gb|EAQ64209.1| Cold-shock protein, DNA-binding [Marinomonas sp. MED121]
          Length = 79

 Score = 80.8 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++KW+N  KG GFI  +       DVF+H  ++ S G   L +GQ V++   +ND  G
Sbjct: 6  KGTVKWFNDSKGVGFIQRDNEA----DVFVHYKSIVSEGHKTLKKGQAVSFFITENDF-G 60

Query: 64 KYSAEN 69
          + ++E 
Sbjct: 61 RQASEV 66


>gi|262037747|ref|ZP_06011189.1| cold shock protein-related protein [Leptotrichia goodfellowii
          F0264]
 gi|261748219|gb|EEY35616.1| cold shock protein-related protein [Leptotrichia goodfellowii
          F0264]
          Length = 65

 Score = 80.8 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI    S E G+D FLH S +   G  ++ EG+ V++D V+    G 
Sbjct: 3  GKVKWFNDKKGFGFI----SGEDGNDYFLHFSKINKEGFKSVNEGEEVSFD-VEEGPKGP 57

Query: 65 YSAENLK 71
           +   + 
Sbjct: 58 QATNVVS 64


>gi|242278634|ref|YP_002990763.1| cold-shock DNA-binding domain protein [Desulfovibrio salexigens
          DSM 2638]
 gi|242121528|gb|ACS79224.1| cold-shock DNA-binding domain protein [Desulfovibrio salexigens
          DSM 2638]
          Length = 69

 Score = 80.8 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G + W+N  KG+GFI      E+G D+++H S V   G   L  G+ V ++ +  D
Sbjct: 1  MSLKGVVSWFNDIKGFGFIV----DEAGRDIYVHYSEVLRDGFKTLNVGEKVVFEVIDED 56

Query: 61 ANGKYSAENL 70
             K +A  +
Sbjct: 57 TAPKATAVRI 66


>gi|81428557|ref|YP_395557.1| cold shock protein CspA family protein [Lactobacillus sakei
          subsp. sakei 23K]
 gi|78610199|emb|CAI55248.1| Similar to cold shock protein, CspA family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 68

 Score = 80.8 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW++  KGYGFI    +    +++F+H +A+   G   L +   V ++  +  A
Sbjct: 1  MERGIVKWFSNAKGYGFI----NYRDDEEIFVHFTAIQIDGYKTLDKDDQVLFEVKEG-A 55

Query: 62 NGKYSAENLKL 72
           G  +A   K+
Sbjct: 56 RGLQAANVQKI 66


>gi|190014803|ref|YP_001967567.1| orf_Bo170 [Agrobacterium tumefaciens]
 gi|71849606|gb|AAZ50554.1| orf_Bo170 [Agrobacterium tumefaciens]
          Length = 100

 Score = 80.8 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  K +GFITP+   + G DVFLH S++A      L  G  + Y   Q   
Sbjct: 1  MPTGKVKWFDAAKRFGFITPD---DGGPDVFLHLSSIADPACPTLQPGLRLHYGVQQ--K 55

Query: 62 NGKYSAENLKLVPKS 76
           GK +A+++  VP  
Sbjct: 56 GGKVTAKDVGPVPVE 70


>gi|268316772|ref|YP_003290491.1| cold-shock DNA-binding domain-containing protein [Rhodothermus
          marinus DSM 4252]
 gi|262334306|gb|ACY48103.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM
          4252]
          Length = 70

 Score = 80.8 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
          + +G++KW++ +KGYGFI  +G    G+DVF+HR+AVA  G    L +G+ ++++  +  
Sbjct: 1  MSQGTVKWFSAEKGYGFIQQDG---GGEDVFVHRTAVAGLGYGEELRKGERLSFEIRRTP 57

Query: 61 ANGKYSAENLKLV 73
                A N+K +
Sbjct: 58 KG--LQAVNVKRL 68


>gi|303283324|ref|XP_003060953.1| cold-shock protein with RNA binding domain [Micromonas pusilla
           CCMP1545]
 gi|226457304|gb|EEH54603.1| cold-shock protein with RNA binding domain [Micromonas pusilla
           CCMP1545]
          Length = 316

 Score = 80.4 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++ W+N  KG+GFIT E   +   D+F+H+S + S G  +L + + V +   Q   +G+
Sbjct: 42  GTVNWFNVAKGFGFITRE---DGQGDIFVHQSDIYSEGFRSLRDEEPVEFTL-QEIGDGR 97

Query: 65  YSAENLK 71
           Y A ++ 
Sbjct: 98  YKAVHVT 104


>gi|324511297|gb|ADY44709.1| Y-box factor [Ascaris suum]
          Length = 294

 Score = 80.4 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      ++G+D+F+H++AV        L +L +G+ V +D V+ 
Sbjct: 39  QGTVKWFNVKNGYGFI---NRADTGEDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEG 95

Query: 60  DANGKYSAEN 69
              G  +A  
Sbjct: 96  Q-KGPEAANV 104


>gi|159476838|ref|XP_001696518.1| nucleic acid binding protein [Chlamydomonas reinhardtii]
 gi|30527347|gb|AAN77901.2| putative nucleic acid binding protein [Chlamydomonas reinhardtii]
 gi|158282743|gb|EDP08495.1| nucleic acid binding protein [Chlamydomonas reinhardtii]
          Length = 247

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  +G++KW+N  KG+GFITP G    G+D+F+H++ + S G  +L EG++     V+  
Sbjct: 5  LRQQGTVKWFNATKGFGFITPGG---GGEDLFVHQTNINSEGFRSLREGEV-VEFEVEAG 60

Query: 61 ANGKYSAENLK 71
           +G+  A N+ 
Sbjct: 61 PDGRSKAVNVT 71


>gi|254455833|ref|ZP_05069262.1| 'Cold-shock' DNA-binding domain, putative [Candidatus
          Pelagibacter sp. HTCC7211]
 gi|207082835|gb|EDZ60261.1| 'Cold-shock' DNA-binding domain, putative [Candidatus
          Pelagibacter sp. HTCC7211]
          Length = 70

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G IKWYN  KGYGFI  +       D F+H SAV +AG+  L EG  + +   ++   G
Sbjct: 5  TGKIKWYNGKKGYGFIERDDKE---KDAFVHASAVKAAGMRYLNEGDKLEFTL-EDGPKG 60

Query: 64 KYSAENLKLV 73
            SA NLK V
Sbjct: 61 P-SAVNLKKV 69


>gi|269121609|ref|YP_003309786.1| cold-shock DNA-binding domain protein [Sebaldella termitidis ATCC
          33386]
 gi|268615487|gb|ACZ09855.1| cold-shock DNA-binding domain protein [Sebaldella termitidis ATCC
          33386]
          Length = 65

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  KG+GFI    S E G+D FLH S +   G  ++ EG+ V ++ V+    G
Sbjct: 2  QGKVKWFNDKKGFGFI----SGEDGNDYFLHFSKIEKDGFKSVNEGEEVIFE-VEEGPKG 56

Query: 64 KYSAENL 70
            +   +
Sbjct: 57 PQATNVV 63


>gi|224370359|ref|YP_002604523.1| CspB2 [Desulfobacterium autotrophicum HRM2]
 gi|223693076|gb|ACN16359.1| CspB2 [Desulfobacterium autotrophicum HRM2]
          Length = 66

 Score = 80.4 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  E    +G DV++H + + S     L++G  V+++  +N  
Sbjct: 1  MAEGIVKWFNDSKGFGFIEQE----NGPDVYVHHTGINSTSFKPLSQGDRVSFEI-ENGQ 55

Query: 62 NGKYSAENLKLV 73
           G   A N+ ++
Sbjct: 56 KG-TVAVNVTVL 66


>gi|254504340|ref|ZP_05116491.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
 gi|222440411|gb|EEE47090.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
          Length = 70

 Score = 80.4 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 5/74 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+IK++N D+G+GFITPE     G DVF+H +A   AG+    EG  V++   ++D
Sbjct: 1  MRENGTIKFFNHDRGFGFITPE---NGGKDVFVHVTAFEQAGIGTPVEGAKVSF-VAEDD 56

Query: 61 ANGK-YSAENLKLV 73
            G+   A  L+L+
Sbjct: 57 RRGRGKQAAQLELL 70


>gi|167461595|ref|ZP_02326684.1| putative cold-shock DNA-binding domain protein [Paenibacillus
          larvae subsp. larvae BRL-230010]
          Length = 59

 Score = 80.4 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
          N +KG+GFI      E G+DVF+H S++   G  +L EGQ V ++  Q +      AEN+
Sbjct: 1  NAEKGFGFIE----IEQGNDVFVHFSSIEGDGYKSLDEGQRVQFNVTQGNRG--PQAENV 54

Query: 71 KLV 73
            V
Sbjct: 55 SKV 57


>gi|302131878|ref|ZP_07257868.1| cold shock protein [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 47

 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 4/48 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
             G++KW+N +KG+GFITP    +SGDD+F+H  A+ S G  +L EG
Sbjct: 4  RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEG 47


>gi|10955166|ref|NP_059822.1| hypothetical protein pTi_150 [Agrobacterium tumefaciens]
 gi|8572732|gb|AAF77178.1| ysb [Agrobacterium tumefaciens]
 gi|11124691|emb|CAC15178.1| CspA-like protein [Agrobacterium tumefaciens]
          Length = 100

 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  K +GFITP+   + G DVFLH S++       L  G  + Y   Q   
Sbjct: 1  MATGKVKWFDATKRFGFITPD---DGGPDVFLHLSSITDPACPTLHPGFRLHYGVEQ--R 55

Query: 62 NGKYSAENLKLVPKSS 77
           GK +A +++  P   
Sbjct: 56 GGKVTASDVRPAPVEQ 71


>gi|254496062|ref|ZP_05108963.1| cold shock protein CspE [Legionella drancourtii LLAP12]
 gi|254354704|gb|EET13338.1| cold shock protein CspE [Legionella drancourtii LLAP12]
          Length = 68

 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW+N  KG+GF+        G D F+H SA+  +G   L EG  V +         
Sbjct: 6  RGTVKWFNESKGFGFLE-----SGGKDYFVHFSAIQGSGFKTLAEGATVMFKASNGQKG- 59

Query: 64 KYSAENLKLV 73
             AE +++V
Sbjct: 60 -PQAEEVEVV 68


>gi|117927315|ref|YP_871866.1| cold-shock DNA-binding protein family protein [Acidothermus
          cellulolyticus 11B]
 gi|117647778|gb|ABK51880.1| cold-shock DNA-binding protein family [Acidothermus
          cellulolyticus 11B]
          Length = 129

 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+P+KG+GF+T +     G DVF+  SA+  AG+ +L  G  V +  V++  
Sbjct: 1  MPTGKVKWYDPEKGFGFLTRD----DGGDVFVRASAL-PAGVTSLKPGSRVEFGIVESKR 55

Query: 62 NGKYSAENLKLVPK 75
               A +++L+  
Sbjct: 56 G--EQALSVRLLDP 67


>gi|83319695|ref|YP_424021.1| cold shock protein [Mycoplasma capricolum subsp. capricolum ATCC
          27343]
 gi|313664918|ref|YP_004046789.1| cold-shock DNA-binding domain protein [Mycoplasma leachii PG50]
 gi|83283581|gb|ABC01513.1| cold shock protein [Mycoplasma capricolum subsp. capricolum ATCC
          27343]
 gi|312949345|gb|ADR23941.1| cold-shock DNA-binding domain protein [Mycoplasma leachii PG50]
          Length = 68

 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N +KG+GFIT +       DVF++ + +   G   L +GQ V+Y+  +   
Sbjct: 1  MSTGIVKWFNDEKGFGFITNDS---DNKDVFVYFANINVNGYKTLEQGQKVSYELNKGIK 57

Query: 62 NGKYSAENLKLVP 74
               A N+ +  
Sbjct: 58 G--LEAFNVSITK 68


>gi|326332155|ref|ZP_08198437.1| cold-shock domain family protein [Nocardioidaceae bacterium
          Broad-1]
 gi|325950053|gb|EGD42111.1| cold-shock domain family protein [Nocardioidaceae bacterium
          Broad-1]
          Length = 132

 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  KG+GF++ +     G DV++H  A+       L  G  V +   Q   
Sbjct: 1  MPTGKVKWFDATKGFGFLSQD----DGPDVYVHADALPEGAAKTLKAGTRVEFGIAQGRR 56

Query: 62 NGKYSAENLKLVPKS 76
               A ++ ++ +S
Sbjct: 57 G--EQALSVTVLERS 69


>gi|297278427|ref|XP_001088540.2| PREDICTED: hypothetical protein LOC700140 [Macaca mulatta]
          Length = 511

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 205 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 261

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 262 -KGAEAANV 269


>gi|323493049|ref|ZP_08098183.1| cold shock protein CspE [Vibrio brasiliensis LMG 20546]
 gi|323312697|gb|EGA65827.1| cold shock protein CspE [Vibrio brasiliensis LMG 20546]
          Length = 50

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL 51
           G++KW+N  KG+GFI  E    +G DVF H SA+   G   L EGQ 
Sbjct: 6  TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAITGDGFRTLVEGQK 49


>gi|331698444|ref|YP_004334683.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326953133|gb|AEA26830.1| cold-shock DNA-binding domain protein [Pseudonocardia
          dioxanivorans CB1190]
          Length = 315

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60
          + +G+++W++ D+G+GF+ PE   +   DVF+H S +    G   L EGQ V ++  +ND
Sbjct: 1  MPQGTVRWFDADRGFGFLAPE---DGSPDVFVHASEIVGGGGAKALREGQAVVFEIGEND 57

Query: 61 ANGKYSAENLKLVPKSS 77
                A  +++   ++
Sbjct: 58 RG--PQALGVRVTADAA 72



 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++ WY P KGYGF +P+G    G D+F+H SA+ + G+    EGQ V +  V +   G 
Sbjct: 81  GTVNWYEPGKGYGFASPDG---GGADIFVHSSAIVTGGVVT--EGQRVAFLIV-DGERGP 134

Query: 65  YSAENLKL 72
            +   + L
Sbjct: 135 QAGHVIPL 142



 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++ WY+ D+G+GFI P+       DVF+H  A+A  GL  L EG  V Y+    +     
Sbjct: 161 TVAWYDEDRGFGFIDPDS---GAGDVFVHARALA-EGLTWLAEGDRVAYEVASGEKG--P 214

Query: 66  SAENLKLV 73
            A ++ LV
Sbjct: 215 QARDVHLV 222



 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +  Y+ D+G+GFITP+     GDD+F H S +  +    L +G  V Y   Q+D   
Sbjct: 253 EGVVARYDEDRGFGFITPDA---GGDDLFAHVSVIMGS--EPLQKGDRVRYAVRQSDRGP 307

Query: 64  K 64
           +
Sbjct: 308 Q 308


>gi|182678504|ref|YP_001832650.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634387|gb|ACB95161.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 224

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW++ +KG+GF+    S + G DVF+H S + S+G+ +L EGQ VT   V +   G
Sbjct: 160 TGTVKWFDDNKGFGFVQ---SNDGGKDVFVHISILGSSGVQHLAEGQAVTMRVV-DTPKG 215

Query: 64  KYS 66
           + +
Sbjct: 216 REA 218



 Score = 54.2 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+  DKG+GF+     +    D FLH  A+ +AG  ++  G  +  +      NG   
Sbjct: 64  VKWFKGDKGFGFVE---LSNGAGDAFLHIGALQAAGYESVPPGAKLKVNV----GNGMKG 116

Query: 67  AENLKLVP 74
           A+  +++ 
Sbjct: 117 AQVTRVLE 124


>gi|154253414|ref|YP_001414238.1| cold-shock DNA-binding domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157364|gb|ABS64581.1| putative cold-shock DNA-binding domain protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 199

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +KW++  KGYGFI PE     GDDV +H S +  AGL  L EG  VT + V+     
Sbjct: 39  TGVVKWFDAVKGYGFIIPE---NGGDDVLVHLSCLKQAGLEALDEGTTVTCEAVRRPKG- 94

Query: 64  KYSAENLKLV 73
              A+ +++V
Sbjct: 95  ---AQAIRVV 101



 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  +GYGF+T     E   D+F+H   +   G+ +L  GQ +   + +    G   
Sbjct: 138 VKWFNRARGYGFVTR---GEGTPDIFIHMETLRRYGIRDLLPGQQINVRFGEG-PKGLMV 193

Query: 67  AE 68
           AE
Sbjct: 194 AE 195


>gi|317508884|ref|ZP_07966523.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
 gi|316252845|gb|EFV12276.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
          Length = 77

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G+++W++P+KG+GFI P+   +   +VF+  +A+   G   L E Q V ++      
Sbjct: 1  MALGTVQWFDPEKGFGFIAPD---DGSAEVFVRYTAIEGRGFRKLVESQKVEFETALIGK 57

Query: 62 NGKYSAENLKLVPKS 76
          +    A  ++ V ++
Sbjct: 58 D--LHATAVRAVEEA 70


>gi|296394984|ref|YP_003659868.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rotundus DSM 44985]
 gi|296182131|gb|ADG99037.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
          44985]
          Length = 77

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G+++W++P+KG+GFI P+   +   +VF+  +A+  +G   L E Q V ++      
Sbjct: 1  MALGTVQWFDPEKGFGFIAPD---DGSAEVFVRYTAIEGSGFRKLVENQKVEFETALVGK 57

Query: 62 N 62
          +
Sbjct: 58 D 58


>gi|271970081|ref|YP_003344277.1| cold-shock DNA-binding domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270513256|gb|ACZ91534.1| putative cold-shock DNA-binding domain protein [Streptosporangium
          roseum DSM 43021]
          Length = 132

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ DKG+GF+T +     G +VF+H SA+   G+ +L  GQ V +   +   
Sbjct: 1  MPSGKVKWYDADKGFGFLTRD----DGGEVFVHSSALPG-GVDSLKPGQKVEFGVAEGRR 55

Query: 62 NGKYSAENLKLVPK 75
               A +++++ +
Sbjct: 56 G--QQALSVRVIDQ 67


>gi|254503760|ref|ZP_05115911.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
 gi|222439831|gb|EEE46510.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii
          DFL-11]
          Length = 66

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++  +G G I PE     GDD+ +  +A+  +G+ +L EGQLV +D      
Sbjct: 1  MLHGNVKWFDKGRGVGTIEPE----DGDDILVDITALRRSGIDSLKEGQLVAFDLEW--R 54

Query: 62 NGKYSAENLKLV 73
           G+  AE+LK++
Sbjct: 55 RGQMVAEDLKVL 66


>gi|148360277|ref|YP_001251484.1| cold shock domain family transporter protein [Legionella
          pneumophila str. Corby]
 gi|148282050|gb|ABQ56138.1| cold shock domain family protein [Legionella pneumophila str.
          Corby]
          Length = 73

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N DKG+GFI       SG D F+H S++ S G   L +G  V +   +     
Sbjct: 6  RGKVKWFNKDKGFGFIE-----SSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKG- 59

Query: 64 KYSAENLKLVP 74
             AE ++++ 
Sbjct: 60 -PQAEEVEVIK 69


>gi|269793785|ref|YP_003313240.1| cold shock domain-containing protein CspD [Sanguibacter keddieii
          DSM 10542]
 gi|269095970|gb|ACZ20406.1| cold shock domain protein CspD [Sanguibacter keddieii DSM 10542]
          Length = 317

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 7/78 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS--AGLFNLTEGQLVTYDYVQN 59
          + +G+++W++ ++G+GF+  +   +  DD+F+H S +     G  +L EGQ V ++  + 
Sbjct: 1  MPQGTVRWFDAERGFGFLALD---DGADDLFVHASEIVGNDDGTQSLREGQSVEFEIGEG 57

Query: 60 DANGKYSAENLKLVPKSS 77
          D      A  +++   S+
Sbjct: 58 DRG--PQARRVQITGDSA 73



 Score = 68.1 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
             G++ WY P KGYGF+TP+G    G ++F H SA+   G+  + EGQ V +  V+ +  
Sbjct: 80  QLGTVTWYEPTKGYGFVTPDG---GGAEIFAHSSAIVGGGV--IAEGQRVAFLVVEGEKG 134

Query: 63  GK 64
            +
Sbjct: 135 PQ 136



 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++ WY+  KG+GF+TP+       D F+H  ++A  G   L EG  V++  V  D     
Sbjct: 164 TVSWYDAGKGFGFVTPDSGE---PDAFVHARSLAG-GATELVEGDRVSFSVVPGDRG--P 217

Query: 66  SAENLKLV 73
            A+++++V
Sbjct: 218 QAQDVRVV 225



 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +  Y+ ++G+GFITP+     G D+F+H S V   G   L EG  V +   Q+D   
Sbjct: 255 EGVVARYDAERGFGFITPDS---GGPDLFVHVS-VVREG-QELYEGDRVRFQVRQSDRGP 309

Query: 64  K 64
           +
Sbjct: 310 Q 310


>gi|58584964|ref|YP_198537.1| cold shock protein [Wolbachia endosymbiont strain TRS of Brugia
          malayi]
 gi|58419280|gb|AAW71295.1| Cold shock protein [Wolbachia endosymbiont strain TRS of Brugia
          malayi]
          Length = 84

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 16/87 (18%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLT--------EGQL 51
          +  G+IKW+N +KGYGFI PE    +G+D+F+H S +  +G+   +L         +G+ 
Sbjct: 1  MEFGNIKWFNAEKGYGFIKPEA---NGNDIFVHISTLERSGIRPDSLRGENKEKGIKGER 57

Query: 52 VTYDYVQNDAN---GKYSAENLKLVPK 75
          V+Y+  +       GK  A NLKL+  
Sbjct: 58 VSYELKEERGRNGEGKKFAINLKLLED 84


>gi|54293997|ref|YP_126412.1| hypothetical protein lpl1057 [Legionella pneumophila str. Lens]
 gi|53753829|emb|CAH15294.1| hypothetical protein lpl1057 [Legionella pneumophila str. Lens]
 gi|307609825|emb|CBW99342.1| hypothetical protein LPW_11201 [Legionella pneumophila 130b]
          Length = 69

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N DKG+GFI       SG D F+H S++ S G   L +G  V +   +     
Sbjct: 6  RGKVKWFNKDKGFGFIE-----SSGKDYFVHFSSIQSDGFKTLPDGAAVLFKMGKGQKG- 59

Query: 64 KYSAENLKLVP 74
             AE ++++ 
Sbjct: 60 -PQAEEVEVIK 69


>gi|296276802|ref|ZP_06859309.1| CSD family cold shock protein [Staphylococcus aureus subsp.
          aureus MR1]
          Length = 55

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          +KG+GFI  E     G DVF+H SA+A  G  +L EGQ V +D V+ D  G+ +A  +K+
Sbjct: 1  EKGFGFIERE----DGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGD-RGEQAANVVKM 55


>gi|261856912|ref|YP_003264195.1| cold-shock DNA-binding domain protein [Halothiobacillus
           neapolitanus c2]
 gi|261837381|gb|ACX97148.1| cold-shock DNA-binding domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 143

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G +KW+N DKG+GFI  E    +G+D+F+H  AV       L EGQ V Y   Q   
Sbjct: 77  REVGHVKWFNTDKGFGFIVRE----NGEDLFVHFRAVGDGSTLQLVEGQKVEYHIGQG-R 131

Query: 62  NGKYSAENL 70
            G  + + +
Sbjct: 132 KGPQAEQVV 140


>gi|183598367|ref|ZP_02959860.1| hypothetical protein PROSTU_01759 [Providencia stuartii ATCC
          25827]
 gi|188020543|gb|EDU58583.1| hypothetical protein PROSTU_01759 [Providencia stuartii ATCC
          25827]
          Length = 71

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H G +KW++ +KGYGFI+P      GDD+F+ R ++A+  + +L EGQ V +   +N +
Sbjct: 5  LHMGRVKWFDANKGYGFISP---INGGDDIFVTRKSIANKKIKSLFEGQNVEFSVTRN-S 60

Query: 62 NGKYSAENL 70
          +G  +A+ +
Sbjct: 61 DGITAADVI 69


>gi|195327031|ref|XP_002030225.1| GM24682 [Drosophila sechellia]
 gi|194119168|gb|EDW41211.1| GM24682 [Drosophila sechellia]
          Length = 1378

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G++KW+N   GYGFI    + E   DVF+H+SA+A       + ++ +G++V +D V  
Sbjct: 63  TGTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 119

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 120 E-KGNEAANV 128


>gi|296106679|ref|YP_003618379.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy]
 gi|295648580|gb|ADG24427.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 69

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N DKG+GFI       SG D F+H S++ S G   L +G  V +   +     
Sbjct: 6  RGKVKWFNKDKGFGFIE-----SSGKDYFVHFSSIQSDGFKTLPDGATVLFKMGKGQKG- 59

Query: 64 KYSAENLKLVP 74
             AE ++++ 
Sbjct: 60 -PQAEEVEVIK 69


>gi|254496824|ref|ZP_05109675.1| cold shock domain-contain protein CspA [Legionella drancourtii
          LLAP12]
 gi|254353951|gb|EET12635.1| cold shock domain-contain protein CspA [Legionella drancourtii
          LLAP12]
          Length = 73

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N  KG+GFI      + GDD+F+H   +   G   L E   VT+  +    
Sbjct: 4  RETGHVKWFNEKKGFGFII----NQQGDDIFVHYKDIQGVGFKTLHENDPVTF-VLDKGP 58

Query: 62 NGKYSAENLKLVPKS 76
           G   A+++ L+ ++
Sbjct: 59 KG-LKAQDVALLSEA 72


>gi|258654840|ref|YP_003203996.1| cold-shock DNA-binding domain-containing protein [Nakamurella
          multipartita DSM 44233]
 gi|258558065|gb|ACV81007.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
          DSM 44233]
          Length = 129

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G IKWY+ DKG+GFI  +G    GDDV +  SA+  AG+  L  GQ V +    +  
Sbjct: 1  MPSGKIKWYDADKGFGFIAQDG---GGDDVHVRSSAL-PAGVATLKPGQKVEFGVA-DGR 55

Query: 62 NGKYSAENLKLV 73
           G   A  +K++
Sbjct: 56 RGPQ-ALQVKVL 66


>gi|270156922|ref|ZP_06185579.1| cold shock protein [Legionella longbeachae D-4968]
 gi|289164651|ref|YP_003454789.1| cold shock protein; Qin prophage [Legionella longbeachae NSW150]
 gi|269988947|gb|EEZ95201.1| cold shock protein [Legionella longbeachae D-4968]
 gi|288857824|emb|CBJ11670.1| cold shock protein; Qin prophage [Legionella longbeachae NSW150]
          Length = 71

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G +KW+N  KG+GFI      E+GDD+F+H   +   G   L E   V++  +    
Sbjct: 4  RETGHVKWFNEKKGFGFII----NENGDDIFVHYKDIQGVGFKTLHENDPVSF-VLDKGP 58

Query: 62 NGKYSAENLKLV 73
           G   A+++ ++
Sbjct: 59 KG-LKAQDVTII 69


>gi|217976725|ref|YP_002360872.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2]
 gi|217502101|gb|ACK49510.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2]
          Length = 217

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++KW++ +KG+GF+    S + G DVF+H S +  +G+ NL EGQ V+   V +   G
Sbjct: 153 TGTVKWFDDNKGFGFVQ---SNDGGKDVFVHISILGPSGVQNLAEGQAVSMRVV-DTPKG 208

Query: 64  KYS 66
           + +
Sbjct: 209 REA 211



 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+  DKG+GF+          D FLH  A+ +AG   +  G  +  +     +NG   
Sbjct: 56  VKWFKGDKGFGFVE---LGNGTGDAFLHIGALQAAGYETVPPGAKLKVNV----SNGMKG 108

Query: 67  AENLKLVP 74
           A+  +++ 
Sbjct: 109 AQVTRVLE 116


>gi|238753510|ref|ZP_04614873.1| Cold shock-like protein [Yersinia ruckeri ATCC 29473]
 gi|238708463|gb|EEQ00818.1| Cold shock-like protein [Yersinia ruckeri ATCC 29473]
          Length = 69

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G +KW+N  KGYGFI+P    + G DV++ ++A+A+    +L+EGQ V +   ++ 
Sbjct: 2  MLKMGRVKWFNQLKGYGFISP---LDGGLDVYVSKTAIANTKNKSLSEGQNVEFSTYKS- 57

Query: 61 ANGKYSAENL 70
           +G  +A+ +
Sbjct: 58 IHGPSAADVI 67


>gi|73976711|ref|XP_848660.1| PREDICTED: similar to nuclease sensitive element binding protein 1
           [Canis familiaris]
          Length = 448

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 170 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 226

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 227 -KGAEAANV 234


>gi|3831556|gb|AAC69999.1| major cold shock protein [Enterococcus faecalis]
          Length = 50

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 5/55 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          KG+GFI+PE     G+DVF+H SA+   G   L EGQ VT+D V++   G  +A 
Sbjct: 1  KGFGFISPE----DGNDVFVHFSAIQGDGFKTLEEGQAVTFD-VEDGHRGPQAAN 50


>gi|227202808|dbj|BAH56877.1| AT4G38680 [Arabidopsis thaliana]
          Length = 204

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 33/45 (73%), Gaps = 3/45 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
            +GS+KW++  KG+GFITP+   + GDD+F+H+S++ S G  +L
Sbjct: 10 RRKGSVKWFDTQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSL 51


>gi|126208205|ref|YP_001053430.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          L20]
 gi|126096997|gb|ABN73825.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae
          serovar 5b str. L20]
          Length = 63

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GFIT +       D+F H S + S G  +L  GQ V ++ +  +     S
Sbjct: 1  MKWFNSAKGFGFITSDNVE---GDIFAHFSEIQSEGYRSLKVGQKVQFELINGERG--AS 55

Query: 67 AENLKLVP 74
          A  + LV 
Sbjct: 56 AAKISLVE 63


>gi|85057350|ref|YP_456266.1| cold shock protein [Aster yellows witches'-broom phytoplasma
          AYWB]
 gi|84789455|gb|ABC65187.1| cold shock protein [Aster yellows witches'-broom phytoplasma
          AYWB]
          Length = 74

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60
           +G+ +W++ DKGYGFI     +  G D+F+H S++ +   G   L E   V +   + D
Sbjct: 6  EQGTCRWFSKDKGYGFII----SADGKDIFVHYSSIQTEVFGRKTLNENDKVEFTVKEGD 61

Query: 61 ANGKYSAENLKLV 73
                A ++ +V
Sbjct: 62 RG--AQAVDVVVV 72


>gi|157738090|ref|YP_001490774.1| cold-shock protein, DNA-binding [Arcobacter butzleri RM4018]
 gi|315636444|ref|ZP_07891687.1| cold shock protein CspA [Arcobacter butzleri JV22]
 gi|157699944|gb|ABV68104.1| cold-shock protein, DNA-binding [Arcobacter butzleri RM4018]
 gi|315479272|gb|EFU69962.1| cold shock protein CspA [Arcobacter butzleri JV22]
          Length = 72

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 9/77 (11%)

Query: 1  MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDY 56
          M ++  G++KW+N +KG+GFI  E   +     F+H S + S+  G   L +GQ V+++ 
Sbjct: 1  MANQNIGTVKWFNSEKGFGFIQLENEDQE---FFVHHSEINSSNYGRATLNDGQKVSFEI 57

Query: 57 VQNDANGKYSAENLKLV 73
           +ND      A+N++ +
Sbjct: 58 GKNDKG--PQAKNVRAI 72


>gi|223982759|ref|ZP_03632987.1| hypothetical protein HOLDEFILI_00261 [Holdemania filiformis DSM
          12042]
 gi|223965259|gb|EEF69543.1| hypothetical protein HOLDEFILI_00261 [Holdemania filiformis DSM
          12042]
          Length = 65

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K +N +KGYGFI        G DVF H S +   G   + E   V +D ++ D   
Sbjct: 2  QGKVKMFNKEKGYGFI----KLSDGRDVFFHYSQLVMDGFKTIEENAEVEFDLIEGDRG- 56

Query: 64 KYSAENLKLV 73
           Y A N+K +
Sbjct: 57 -YQAHNVKKL 65


>gi|301784071|ref|XP_002927454.1| PREDICTED: hypothetical protein LOC100472801 [Ailuropoda
           melanoleuca]
          Length = 371

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 62  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 119 -KGAEAANV 126


>gi|18310224|ref|NP_562158.1| cold shock protein [Clostridium perfringens str. 13]
 gi|110798743|ref|YP_695895.1| cold shock protein [Clostridium perfringens ATCC 13124]
 gi|168205487|ref|ZP_02631492.1| cold shock protein [Clostridium perfringens E str. JGS1987]
 gi|168209633|ref|ZP_02635258.1| cold shock protein [Clostridium perfringens B str. ATCC 3626]
 gi|168213057|ref|ZP_02638682.1| cold shock protein [Clostridium perfringens CPE str. F4969]
 gi|168217114|ref|ZP_02642739.1| cold shock protein [Clostridium perfringens NCTC 8239]
 gi|169343961|ref|ZP_02864952.1| cold shock protein [Clostridium perfringens C str. JGS1495]
 gi|18144903|dbj|BAB80948.1| cold shock protein [Clostridium perfringens str. 13]
 gi|110673390|gb|ABG82377.1| cold shock protein [Clostridium perfringens ATCC 13124]
 gi|169297869|gb|EDS79964.1| cold shock protein [Clostridium perfringens C str. JGS1495]
 gi|170663060|gb|EDT15743.1| cold shock protein [Clostridium perfringens E str. JGS1987]
 gi|170712262|gb|EDT24444.1| cold shock protein [Clostridium perfringens B str. ATCC 3626]
 gi|170715408|gb|EDT27590.1| cold shock protein [Clostridium perfringens CPE str. F4969]
 gi|182380855|gb|EDT78334.1| cold shock protein [Clostridium perfringens NCTC 8239]
          Length = 69

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
           G +KW+N +KGYGFI    S + GDDVF+H S V   G   +L EG+ V++D  + +  
Sbjct: 5  TGIVKWFNQEKGYGFI----SCDEGDDVFVHISQVKEKGPEKDLHEGESVSFDISEGEKG 60

Query: 63 GKYSAENLKLV 73
              A N++ +
Sbjct: 61 --PMATNVQKL 69


>gi|72160638|ref|YP_288295.1| cold-shock DNA-binding protein family protein [Thermobifida fusca
          YX]
 gi|71914370|gb|AAZ54272.1| cold-shock DNA-binding protein family [Thermobifida fusca YX]
          Length = 127

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+  KG+GF+T +     G +VFLH SA+   G   L  GQ V +  V+   
Sbjct: 1  MPTGKVKWYDAGKGFGFLTKD----DGGEVFLHASAL-PPGTTTLRPGQRVEFGIVEGRK 55

Query: 62 NGKYSAENLKLV 73
               A  ++L+
Sbjct: 56 G--TQALQVRLL 65


>gi|118589799|ref|ZP_01547204.1| putative cold shock-like transcription regulator protein [Stappia
          aggregata IAM 12614]
 gi|118437885|gb|EAV44521.1| putative cold shock-like transcription regulator protein [Stappia
          aggregata IAM 12614]
          Length = 70

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+IK++N D+G+GFITPE       DVF+H +A   AG+    EG  +++   ++D
Sbjct: 1  MRENGTIKFFNHDRGFGFITPE---NGSKDVFVHITAFEQAGIGTPVEGAKISF-VAEDD 56

Query: 61 ANGK-YSAENLKLV 73
            G+   A  L+L+
Sbjct: 57 RRGRGKQAAQLELL 70


>gi|90415923|ref|ZP_01223856.1| Cold shock protein [marine gamma proteobacterium HTCC2207]
 gi|90332297|gb|EAS47494.1| Cold shock protein [marine gamma proteobacterium HTCC2207]
          Length = 89

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +KW++ D+G+GFI P+        +F H   +   G   L   Q VTYD V++ 
Sbjct: 1  MADTGRVKWFSNDRGFGFIEPDNGERE---LFAHHQNIIMEGYKTLKCFQRVTYD-VEHG 56

Query: 61 ANGKYSAENLKLVPKSS 77
           NG+++   + ++P  +
Sbjct: 57 KNGRHA---VNIIPGEA 70


>gi|269955008|ref|YP_003324797.1| cold-shock DNA-binding domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303689|gb|ACZ29239.1| cold-shock DNA-binding domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 311

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++ WY+  KG+GF+ P+     G+DVF+H SA+   GL  L EG  VTYD V+ +    
Sbjct: 158 GTVSWYDDTKGFGFVAPDS---GGEDVFVHVSAL-GPGLTELFEGARVTYDVVEGERG-- 211

Query: 65  YSAENLKLV 73
            +A +++LV
Sbjct: 212 PNAHDVRLV 220



 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
          + +G+++W++ ++G+GFI         +D+F+H S +    G   L EGQ V ++  + D
Sbjct: 1  MPQGTVRWFDAERGFGFI---DVGNEAEDLFVHASEIVGDDGPRLLREGQAVEFEVGEGD 57

Query: 61 ANGKYSAENLKL 72
                A  +++
Sbjct: 58 RG--PQARRVRV 67



 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           G++ WY P KGYGF+TP+G  +    VF+H SA+   G+ +  EGQ V +  V+ +  
Sbjct: 81  GTVSWYEPAKGYGFVTPDGGRDE---VFVHSSAIVGGGVIS--EGQRVAFLVVEGERG 133



 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++  Y+ ++G+GFITP+     G D+F+H S +   G  +L EG  V +   Q+D   
Sbjct: 249 EGTVARYDAERGFGFITPDA---GGADLFVHVSVLRGVG--DLAEGDRVRFKVRQSDRG- 302

Query: 64  KYSAENLKLV 73
              A+ ++LV
Sbjct: 303 -PQADGVELV 311


>gi|215426134|ref|ZP_03424053.1| cold shock protein B cspB [Mycobacterium tuberculosis T92]
          Length = 157

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+PDKG+GF++ E     G+DV++  SA+   G+  L  GQ V +    +  
Sbjct: 1  MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIA-SGR 54

Query: 62 NGKYSAENLKLVPK 75
           G   A +L+L+  
Sbjct: 55 RGPQ-ALSLRLIEP 67


>gi|257057363|ref|YP_003135195.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
 gi|256587235|gb|ACU98368.1| cold-shock DNA-binding protein family [Saccharomonospora viridis
          DSM 43017]
          Length = 128

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ DKG+GF+T     + G DV++ +SA+   G+  L  GQ + +   +   
Sbjct: 1  MPTGKVKWYDADKGFGFVT----EDGGRDVYVRKSAL-PQGVETLKAGQRLEFGIAEGRR 55

Query: 62 NGKYSAENLKLVPK 75
               A +++L+  
Sbjct: 56 G--PQALSVRLLDP 67


>gi|328957375|ref|YP_004374761.1| cold shock protein CspB [Carnobacterium sp. 17-4]
 gi|328673699|gb|AEB29745.1| cold shock protein CspB [Carnobacterium sp. 17-4]
          Length = 68

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
          + +G++KW++ +KGYGFI         +D+F+H + +       +L+ GQ V+++ ++  
Sbjct: 1  MEQGTVKWFSNEKGYGFIE----YNETEDIFIHFTGIDNGEDFKSLSSGQHVSFEILEG- 55

Query: 61 ANGKYSAENLKL 72
          A G  + + + +
Sbjct: 56 ARGPQATKVIVV 67


>gi|83649125|ref|YP_437560.1| cold shock protein [Hahella chejuensis KCTC 2396]
 gi|83637168|gb|ABC33135.1| Cold shock protein [Hahella chejuensis KCTC 2396]
          Length = 71

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KGYGFI          DVF+H SA+   G   L  G  V Y  VQ+ + G
Sbjct: 8  TGMVKWFNNAKGYGFIESAEG-----DVFVHYSAIRKDGYKTLRAGSHVEYQ-VQHSSKG 61

Query: 64 KYSAEN 69
           ++ E 
Sbjct: 62 LFAQEV 67


>gi|2493772|sp|P72191|TAPA_PSEFR RecName: Full=Temperature acclimation protein A; AltName:
          Full=E7.0
 gi|1513084|gb|AAC45999.1| temperature acclimation protein A [Pseudomonas fragi]
          Length = 59

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ        A+ 
Sbjct: 1  FNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQKG--MQADK 54

Query: 70 LK 71
          ++
Sbjct: 55 VQ 56


>gi|269123694|ref|YP_003306271.1| cold-shock DNA-binding domain-containing protein [Streptobacillus
          moniliformis DSM 12112]
 gi|268315020|gb|ACZ01394.1| cold-shock DNA-binding domain protein [Streptobacillus
          moniliformis DSM 12112]
          Length = 65

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW+N  KG+GFI+     E G D FLH S +   G   + EG+ V +D  ++   G 
Sbjct: 3  GKVKWFNEKKGFGFIS----GEDGKDYFLHFSKINKGGFKTVNEGEEVEFDI-EDGEKGP 57

Query: 65 YSAENLK 71
           +   + 
Sbjct: 58 QATNVVS 64


>gi|170017486|ref|YP_001728405.1| cold shock protein [Leuconostoc citreum KM20]
 gi|169804343|gb|ACA82961.1| Cold shock protein [Leuconostoc citreum KM20]
          Length = 74

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K +  ++GYG+ITP+     G+DVF+H + +   G   L +G+ V+Y  VQ   
Sbjct: 1  MKTGIVKIWQKERGYGYITPDA---GGEDVFVHFNGIDMPGFKALKQGEKVSYVLVQGYK 57

Query: 62 NGKYSAENLKLVPKSSN 78
              +A+   ++ K+S 
Sbjct: 58 A-PQAAQVQPIMKKASE 73


>gi|256374634|ref|YP_003098294.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
 gi|255918937|gb|ACU34448.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM
          43827]
          Length = 131

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ +KG+GF+T +     G+DV++ +SA+   G+  L  GQ + +   +   
Sbjct: 4  VPTGKVKWYDSEKGFGFVTQD----GGEDVYVRKSAL-PEGVDALKAGQRIEFGMAEGRR 58

Query: 62 NGKYSAENLKLVPKS 76
               A +++LV  +
Sbjct: 59 G--PQALSVRLVDPA 71


>gi|108803576|ref|YP_643513.1| cold-shock DNA-binding protein family protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108764819|gb|ABG03701.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 69

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 5/74 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +KW++ +KG+GFI     TESG++V +H + +   G   L EG  V Y  V+ + 
Sbjct: 1  MGRGRVKWFSGEKGFGFIE----TESGEEVLVHYTEIKGEGFRALEEGAEVEYAAVKTE- 55

Query: 62 NGKYSAENLKLVPK 75
          +G+  A  ++++P+
Sbjct: 56 DGRRRAFGVRMLPR 69


>gi|330883205|gb|EGH17354.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 59

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +N +KG+GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ        A+ 
Sbjct: 1  FNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQKG--MQADE 54

Query: 70 LK 71
          ++
Sbjct: 55 VQ 56


>gi|296201419|ref|XP_002748032.1| PREDICTED: Y-box-binding protein 2-like [Callithrix jacchus]
          Length = 390

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 103 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 159

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 160 -KGAEAANV 167


>gi|150024384|ref|YP_001295210.1| cold shock protein [Flavobacterium psychrophilum JIP02/86]
 gi|149770925|emb|CAL42390.1| Probable cold shock protein [Flavobacterium psychrophilum
          JIP02/86]
          Length = 66

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 7/71 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KGYGFIT +   E+G D+F+H S + +     L EG  V+Y+  +   
Sbjct: 1  MRTGTVKFFNESKGYGFITDD---ETGKDIFVHASGIKAE---ELREGDKVSYE-EEEGR 53

Query: 62 NGKYSAENLKL 72
           G+ +A+ + +
Sbjct: 54 KGRVAAQVVVI 64


>gi|254823203|ref|ZP_05228204.1| CspB [Mycobacterium intracellulare ATCC 13950]
          Length = 135

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ DKG+GF++ E     G+DV++  SA+  AG+  L  GQ V +    +  
Sbjct: 1  MPTGKVKWYDADKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 54

Query: 62 NGKYSAENLKLVPK 75
           G   A +LKL+  
Sbjct: 55 RGPQ-ALSLKLIEP 67


>gi|307947474|ref|ZP_07662807.1| cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4]
 gi|307769292|gb|EFO28520.1| cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4]
          Length = 70

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G+IK++N D+G+GFITPE     G DVF+H +A   AG+    EG  +++   ++D
Sbjct: 1  MRETGTIKFFNHDRGFGFITPES---GGKDVFVHITAFEQAGMPAPEEGAKISF-VAEDD 56

Query: 61 A--NGKYSAE 68
              GK +A+
Sbjct: 57 RRGRGKQAAQ 66


>gi|118466199|ref|YP_880259.1| cold shock DNA-binding domain-containing protein [Mycobacterium
          avium 104]
 gi|254773885|ref|ZP_05215401.1| CspB [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118167486|gb|ABK68383.1| 'Cold-shock' DNA-binding domain [Mycobacterium avium 104]
          Length = 135

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ DKG+GF++ E     G+DV++  SA+  AG+  L  GQ V +    +  
Sbjct: 1  MPTGKVKWYDADKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 54

Query: 62 NGKYSAENLKLVPK 75
           G   A +LKL+  
Sbjct: 55 RGPQ-ALSLKLIEP 67


>gi|13475110|ref|NP_106674.1| cold-shock protein [Mesorhizobium loti MAFF303099]
 gi|14025861|dbj|BAB52460.1| cold-shock protein [Mesorhizobium loti MAFF303099]
          Length = 68

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KWYNP KG+GFI PE       D+F+H +A+  +GL  L EGQ V     Q  
Sbjct: 1  MESEGTVKWYNPQKGFGFIAPE---NGEKDIFVHATALTRSGLSMLMEGQKVFVQCGQGK 57

Query: 61 AN 62
            
Sbjct: 58 KG 59


>gi|289749391|ref|ZP_06508769.1| LOW QUALITY PROTEIN: cold shock protein B cspB [Mycobacterium
          tuberculosis T92]
 gi|289689978|gb|EFD57407.1| LOW QUALITY PROTEIN: cold shock protein B cspB [Mycobacterium
          tuberculosis T92]
          Length = 136

 Score = 78.1 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+PDKG+GF++ E     G+DV++  SA+   G+  L  GQ V +    +  
Sbjct: 1  MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIA-SGR 54

Query: 62 NGKYSAENLKLVPK 75
           G   A +L+L+  
Sbjct: 55 RGPQ-ALSLRLIEP 67


>gi|242000494|ref|XP_002434890.1| PIN domain-containing RNA-binding protein, putative [Ixodes
          scapularis]
 gi|215498220|gb|EEC07714.1| PIN domain-containing RNA-binding protein, putative [Ixodes
          scapularis]
          Length = 315

 Score = 78.1 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI    + E   D+F+H++A+        + ++ EG+ V +D V  +
Sbjct: 19 GTVKWFNVKNGYGFINRNDTRE---DIFVHQTAITRNNPQKIMRSVGEGETVEFDVVVGE 75

Query: 61 ANGKYSAEN 69
            G+ +A  
Sbjct: 76 -KGREAANV 83


>gi|148688938|gb|EDL20885.1| cold shock domain protein A, isoform CRA_a [Mus musculus]
          Length = 405

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 129 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 185

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 186 -KGAEAANV 193


>gi|11493820|gb|AAG35657.1|AF204736_1 cold shock protein C [Yersinia enterocolitica]
          Length = 46

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
          +G +KW+N  KG+GFITP    +   DVF+H SA+   G   L EGQ
Sbjct: 2  KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQ 45


>gi|270158155|ref|ZP_06186812.1| cold shock domain family protein [Legionella longbeachae D-4968]
 gi|289163584|ref|YP_003453722.1| stress protein, member of the CspA-family [Legionella longbeachae
          NSW150]
 gi|269990180|gb|EEZ96434.1| cold shock domain family protein [Legionella longbeachae D-4968]
 gi|288856757|emb|CBJ10568.1| stress protein, member of the CspA-family [Legionella longbeachae
          NSW150]
          Length = 69

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW+N  KG+GF+        G D F+H SA++  G   L EG  V +         
Sbjct: 6  RGTVKWFNESKGFGFLE-----SGGKDYFVHFSAISGTGFKTLAEGATVVFKPSNGQKG- 59

Query: 64 KYSAENLKLV 73
             AE +++V
Sbjct: 60 -PQAEEVEVV 68


>gi|3831558|gb|AAC70000.1| major cold shock protein [Pediococcus pentosaceus]
          Length = 50

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          KG+GFIT E     G DVF+H SA+ S G   L EGQ V++D  ++D  G  +A 
Sbjct: 1  KGFGFITRE----DGSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESD-RGPQAAN 50


>gi|74007475|ref|XP_549033.2| PREDICTED: similar to cold shock domain protein A [Canis
           familiaris]
          Length = 383

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           RGS+KW+N   GYGFI+   + E   DVF+H++A+          ++ +G+ V +D VQ 
Sbjct: 70  RGSVKWFNVKNGYGFISRHDTQE---DVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQG 126

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 127 E-RGTEAANV 135


>gi|42521032|ref|NP_966947.1| cold-shock domain-contain protein [Wolbachia endosymbiont of
          Drosophila melanogaster]
 gi|58698415|ref|ZP_00373326.1| cold-shock domain family protein [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|225630894|ref|YP_002727685.1| cold-shock domain family protein [Wolbachia sp. wRi]
 gi|225677316|ref|ZP_03788293.1| cold-shock domain family protein [Wolbachia endosymbiont of
          Muscidifurax uniraptor]
 gi|42410773|gb|AAS14881.1| cold-shock domain family protein [Wolbachia endosymbiont of
          Drosophila melanogaster]
 gi|58535070|gb|EAL59158.1| cold-shock domain family protein [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|225590643|gb|EEH11893.1| cold-shock domain family protein [Wolbachia endosymbiont of
          Muscidifurax uniraptor]
 gi|225592875|gb|ACN95894.1| cold-shock domain family protein [Wolbachia sp. wRi]
          Length = 83

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 16/84 (19%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLT--------EGQL 51
          +  G++KW+N +KGYGFI PEG    G DVF+H S +  +G+    L         +G+ 
Sbjct: 1  MEFGNVKWFNAEKGYGFIKPEGK---GGDVFVHISTLERSGIRPEALKGENKEKGIKGER 57

Query: 52 VTYDY-VQNDANG--KYSAENLKL 72
          V+Y+   +   NG  K SA NL+L
Sbjct: 58 VSYEVKEERGRNGEDKKSAINLRL 81


>gi|294500244|ref|YP_003563944.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294350181|gb|ADE70510.1| cold shock protein [Bacillus megaterium QM B1551]
          Length = 70

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          H+G++K +N  KG GFITPE   +   +VF+H +A+      NL+EGQ V ++  Q  A 
Sbjct: 4  HKGTVKSFNESKGSGFITPE---DGSKEVFVHSNAIDHEEYKNLSEGQKVEFEI-QEGAK 59

Query: 63 GKYS 66
          G  +
Sbjct: 60 GPSA 63


>gi|224095946|ref|XP_002188961.1| PREDICTED: Rous sarcoma virus transcription enhancer factor II
           [Taeniopygia guttata]
          Length = 420

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 213 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 269

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 270 -KGAEAANV 277


>gi|126335948|ref|XP_001376438.1| PREDICTED: similar to Nsep1 protein [Monodelphis domestica]
          Length = 290

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI  + + E   DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 19 GTVKWFNVRNGYGFINRDDTKE---DVFVHQTAIKKNNPRKYLRSVGDGEPVEFDVVEGE 75

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 76 -KGVEAANV 83


>gi|296169637|ref|ZP_06851255.1| cold-shock domain family protein [Mycobacterium parascrofulaceum
          ATCC BAA-614]
 gi|295895634|gb|EFG75330.1| cold-shock domain family protein [Mycobacterium parascrofulaceum
          ATCC BAA-614]
          Length = 137

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ DKG+GF++ E     G+DV++  SA+  AG+  L  GQ V +    +  
Sbjct: 1  MPTGKVKWYDADKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 54

Query: 62 NGKYSAENLKLVPK 75
           G   A +LKL+  
Sbjct: 55 RGPQ-ALSLKLIEP 67


>gi|325286936|ref|YP_004262726.1| cold-shock DNA-binding domain-containing protein [Cellulophaga
          lytica DSM 7489]
 gi|324322390|gb|ADY29855.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM
          7489]
          Length = 63

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFITP+   + G DVF+H S +       + EG  V+YD  +   
Sbjct: 1  MSNGTVKFFNDSKGFGFITPD---DGGKDVFVHISGLTHE----IAEGDKVSYDVEEGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N++++
Sbjct: 54 G--PNAVNVEVL 63


>gi|39939157|ref|NP_950923.1| cold shock protein [Onion yellows phytoplasma OY-M]
 gi|39722266|dbj|BAD04756.1| cold shock protein [Onion yellows phytoplasma OY-M]
          Length = 74

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60
           +G+ +W++ DKGYGFI     +  G D+F+H S++ +   G   L E   V +   + D
Sbjct: 6  QQGTCRWFSKDKGYGFIV----SVDGKDIFVHYSSIQTEVFGRKTLNENDKVEFTVKEGD 61

Query: 61 ANGKYSAENLKLV 73
                A ++ +V
Sbjct: 62 RG--AQAVDVVVV 72


>gi|332266403|ref|XP_003282197.1| PREDICTED: y-box-binding protein 2-like [Nomascus leucogenys]
          Length = 430

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 169 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 225

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 226 -KGAEAANV 233


>gi|260185766|ref|ZP_05763240.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A]
 gi|289446436|ref|ZP_06436180.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A]
 gi|289419394|gb|EFD16595.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A]
          Length = 135

 Score = 77.7 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+PDKG+GF++ E     G+DV++  SA+   G+  L  GQ V +    +  
Sbjct: 1  MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIA-SGR 54

Query: 62 NGKYSAENLKLVPK 75
           G   A +L+L+  
Sbjct: 55 RGPQ-ALSLRLIEP 67


>gi|15608011|ref|NP_215386.1| cold shock-like protein B CspB [Mycobacterium tuberculosis H37Rv]
 gi|15840284|ref|NP_335321.1| cold-shock domain-contain protein [Mycobacterium tuberculosis
          CDC1551]
 gi|31792059|ref|NP_854552.1| cold shock-like protein B CspB [Mycobacterium bovis AF2122/97]
 gi|121636794|ref|YP_977017.1| putative cold shock-like protein B cspB [Mycobacterium bovis BCG
          str. Pasteur 1173P2]
 gi|148660648|ref|YP_001282171.1| cold-shock domain-contain protein [Mycobacterium tuberculosis
          H37Ra]
 gi|215402667|ref|ZP_03414848.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987]
 gi|215410456|ref|ZP_03419264.1| cold shock protein B cspB [Mycobacterium tuberculosis 94_M4241A]
 gi|215429728|ref|ZP_03427647.1| cold shock protein B cspB [Mycobacterium tuberculosis EAS054]
 gi|215445010|ref|ZP_03431762.1| cold shock protein B cspB [Mycobacterium tuberculosis T85]
 gi|218752536|ref|ZP_03531332.1| cold shock protein B cspB [Mycobacterium tuberculosis GM 1503]
 gi|219556733|ref|ZP_03535809.1| cold shock protein B cspB [Mycobacterium tuberculosis T17]
 gi|224989265|ref|YP_002643952.1| putative cold shock-like protein B [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|254549847|ref|ZP_05140294.1| cold shock protein B cspB [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|260199890|ref|ZP_05767381.1| cold shock protein B cspB [Mycobacterium tuberculosis T46]
 gi|260204068|ref|ZP_05771559.1| cold shock protein B cspB [Mycobacterium tuberculosis K85]
 gi|289442280|ref|ZP_06432024.1| cold shock protein B cspB [Mycobacterium tuberculosis T46]
 gi|289568834|ref|ZP_06449061.1| cold shock protein B cspB [Mycobacterium tuberculosis T17]
 gi|289573493|ref|ZP_06453720.1| cold shock protein B cspB [Mycobacterium tuberculosis K85]
 gi|289752926|ref|ZP_06512304.1| cold-shock protein B cspB [Mycobacterium tuberculosis EAS054]
 gi|289756956|ref|ZP_06516334.1| cold shock protein B cspB [Mycobacterium tuberculosis T85]
 gi|289761002|ref|ZP_06520380.1| cold shock-like protein B cspB [Mycobacterium tuberculosis GM
          1503]
 gi|294996351|ref|ZP_06802042.1| cold shock protein [Mycobacterium tuberculosis 210]
 gi|297633388|ref|ZP_06951168.1| cold shock protein [Mycobacterium tuberculosis KZN 4207]
 gi|297730373|ref|ZP_06959491.1| cold shock protein [Mycobacterium tuberculosis KZN R506]
 gi|306774995|ref|ZP_07413332.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu001]
 gi|306782090|ref|ZP_07420427.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu002]
 gi|306783539|ref|ZP_07421861.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu003]
 gi|306787904|ref|ZP_07426226.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu004]
 gi|306792245|ref|ZP_07430547.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu005]
 gi|306796643|ref|ZP_07434945.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu006]
 gi|306802530|ref|ZP_07439198.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu008]
 gi|306806712|ref|ZP_07443380.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu007]
 gi|306966908|ref|ZP_07479569.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu009]
 gi|306971103|ref|ZP_07483764.1| putative cold-shock DNA-binding domain protein [Mycobacterium
          tuberculosis SUMu010]
 gi|307078831|ref|ZP_07488001.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu011]
 gi|313657699|ref|ZP_07814579.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN V2475]
 gi|2916930|emb|CAA17677.1| PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB [Mycobacterium
          tuberculosis H37Rv]
 gi|13880445|gb|AAK45135.1| cold-shock domain family protein [Mycobacterium tuberculosis
          CDC1551]
 gi|31617646|emb|CAD93756.1| PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB [Mycobacterium bovis
          AF2122/97]
 gi|121492441|emb|CAL70909.1| Probable cold shock-like protein B cspB [Mycobacterium bovis BCG
          str. Pasteur 1173P2]
 gi|148504800|gb|ABQ72609.1| cold-shock domain family protein [Mycobacterium tuberculosis
          H37Ra]
 gi|224772378|dbj|BAH25184.1| putative cold shock-like protein B [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|289415199|gb|EFD12439.1| cold shock protein B cspB [Mycobacterium tuberculosis T46]
 gi|289537924|gb|EFD42502.1| cold shock protein B cspB [Mycobacterium tuberculosis K85]
 gi|289542588|gb|EFD46236.1| cold shock protein B cspB [Mycobacterium tuberculosis T17]
 gi|289693513|gb|EFD60942.1| cold-shock protein B cspB [Mycobacterium tuberculosis EAS054]
 gi|289708508|gb|EFD72524.1| cold shock-like protein B cspB [Mycobacterium tuberculosis GM
          1503]
 gi|289712520|gb|EFD76532.1| cold shock protein B cspB [Mycobacterium tuberculosis T85]
 gi|308216490|gb|EFO75889.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu001]
 gi|308325206|gb|EFP14057.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu002]
 gi|308331700|gb|EFP20551.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu003]
 gi|308335465|gb|EFP24316.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu004]
 gi|308339263|gb|EFP28114.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu005]
 gi|308342940|gb|EFP31791.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu006]
 gi|308346825|gb|EFP35676.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu007]
 gi|308350742|gb|EFP39593.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu008]
 gi|308355403|gb|EFP44254.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu009]
 gi|308359355|gb|EFP48206.1| putative cold-shock DNA-binding domain protein [Mycobacterium
          tuberculosis SUMu010]
 gi|308363262|gb|EFP52113.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu011]
 gi|326904909|gb|EGE51842.1| cold shock protein B cspB [Mycobacterium tuberculosis W-148]
          Length = 135

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+PDKG+GF++ E     G+DV++  SA+   G+  L  GQ V +    +  
Sbjct: 1  MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIA-SGR 54

Query: 62 NGKYSAENLKLVPK 75
           G   A +L+L+  
Sbjct: 55 RGPQ-ALSLRLIEP 67


>gi|323136438|ref|ZP_08071520.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
           49242]
 gi|322398512|gb|EFY01032.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
           49242]
          Length = 224

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +KW++  KG+GF+    S + G DVF+H S +  +G+  L EGQ VT   V + A G+
Sbjct: 161 GKVKWFDETKGFGFVQ---SNDGGKDVFVHISILGPSGVSRLVEGQPVTMQVV-DTAKGR 216

Query: 65  YS 66
            +
Sbjct: 217 EA 218



 Score = 56.9 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+  DKG+GF+          D FLH  AV +AG   L  G  +      +   G+  
Sbjct: 57  VKWFKTDKGFGFVE---LANGTGDAFLHIGAVQAAGYDTLPPGAKLQVQVT-SSVKGQQV 112

Query: 67  AENLKL 72
           A  L +
Sbjct: 113 ARILDV 118


>gi|222109154|ref|YP_002551419.1| CspA-like protein [Agrobacterium vitis S4]
 gi|221738428|gb|ACM39293.1| CspA-like protein [Agrobacterium vitis S4]
          Length = 99

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  KGYGFIT +   + G DVFLH S V  A L  L  G  + Y  V    
Sbjct: 1  MPTGKLKWFDTTKGYGFITSD---DGGPDVFLHLSKVTEANLPTLQPGVRLRY--VLGRQ 55

Query: 62 NGKYSAENLKLVPKSS 77
            K SA +L L+P  +
Sbjct: 56 GNKVSAHDLSLMPDEA 71


>gi|189499792|ref|YP_001959262.1| cold-shock DNA-binding domain-containing protein [Chlorobium
          phaeobacteroides BS1]
 gi|189495233|gb|ACE03781.1| cold-shock DNA-binding domain protein [Chlorobium
          phaeobacteroides BS1]
          Length = 96

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQN 59
          M  +  +KW++  KGYGFI    + + G+D+F+H SA+ S      L +   V ++  Q 
Sbjct: 1  MSRKSKVKWFDGKKGYGFIV---NPDGGEDIFVHFSAIVSEQSFKVLNQDAEVEFEIDQT 57

Query: 60 DANGKYSAENL 70
                 A+N+
Sbjct: 58 QKG--MQAKNV 66


>gi|15234010|ref|NP_195580.1| GRP2 (GLYCINE RICH PROTEIN 2); double-stranded DNA binding / mRNA
          binding / nucleic acid binding / single-stranded DNA
          binding [Arabidopsis thaliana]
 gi|13430580|gb|AAK25912.1|AF360202_1 putative glycine-rich protein GRP2 [Arabidopsis thaliana]
 gi|14326487|gb|AAK60289.1|AF385696_1 AT4g38680/F20M13_240 [Arabidopsis thaliana]
 gi|259445|gb|AAB24074.1| glycine-rich protein [Arabidopsis thaliana]
 gi|4467155|emb|CAB37524.1| glycine-rich protein 2 (GRP2) [Arabidopsis thaliana]
 gi|7270851|emb|CAB80532.1| glycine-rich protein 2 (GRP2) [Arabidopsis thaliana]
 gi|14532850|gb|AAK64107.1| putative glycine-rich protein 2 [Arabidopsis thaliana]
 gi|22137152|gb|AAM91421.1| AT4g38680/F20M13_240 [Arabidopsis thaliana]
 gi|332661564|gb|AEE86964.1| glycine rich protein 2 [Arabidopsis thaliana]
          Length = 203

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 33/45 (73%), Gaps = 3/45 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
            +GS+KW++  KG+GFITP+   + GDD+F+H+S++ S G  +L
Sbjct: 10 RRKGSVKWFDTQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSL 51


>gi|20803992|emb|CAD31569.1| PUTATIVE TRANSCRIPTION REGULATOR COLD SHOCK PROTEIN [Mesorhizobium
           loti R7A]
          Length = 200

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           ++KWYNP+KG+GFI PE       D+F+H +A+  +GL  L EGQ V     Q    
Sbjct: 138 TVKWYNPEKGFGFIAPE---NGEKDIFVHATALTRSGLSMLMEGQKVFVQCGQGKKG 191



 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           + W+N  KG+GF+      ++    +LH   + +AG   ++EG  +     ++   G   
Sbjct: 47  VVWFNTSKGFGFVKLPQGIQA----YLHIRVLEAAGSRGVSEGTRLKVTTEESPRGGHQV 102

Query: 67  AENLKLVPKSS 77
           A+ L++  +++
Sbjct: 103 AQVLEVGDQTA 113


>gi|325114942|emb|CBZ50498.1| cold-shock protein, DNA-binding, related [Neospora caninum
          Liverpool]
          Length = 125

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG  KW++  KG+GFIT     E G D+F+H++ + + G  NL EG+ V +  VQ   
Sbjct: 5  IQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVGH 59

Query: 62 NGKYSAENLK 71
          +GK  A  + 
Sbjct: 60 DGKRKAVGVT 69


>gi|296128179|ref|YP_003635429.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296019994|gb|ADG73230.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 418

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++ WY+ +KG+GF+ P+   + G+DVF H  ++   GL  L EG  VT+D V  +    
Sbjct: 158 GTVTWYDAEKGFGFVAPD---DGGEDVFAHAKSLVG-GLSELVEGDRVTFDVVDGEKG-- 211

Query: 65  YSAENLKLV 73
             A +++LV
Sbjct: 212 PQARDIRLV 220



 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + + +++W++ ++G+GF+      +  +D+F+H S +       L EGQ V Y+  + D 
Sbjct: 1  MPQATVRWFDAERGFGFLA---LGDDAEDLFVHASEIIGEP-RVLREGQEVEYELGEGDR 56

Query: 62 NGKYSAENLKL 72
               A  +++
Sbjct: 57 G--PQARKVRV 65



 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
             G++ WY P KGYGF+TP+G    G ++F+H SAV   G+  L +GQ V +  V  +  
Sbjct: 77  QLGTVSWYEPAKGYGFLTPDG---GGAEIFVHSSAVVGGGV--LHDGQRVAFLVVDGEKG 131

Query: 63  GK 64
            +
Sbjct: 132 PQ 133



 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++  Y+ D+G+GFI P+     GDD+F+H S V       L EG  V Y+  Q+D   
Sbjct: 250 EGTVARYDADRGFGFIRPDA---GGDDLFVHVSVVRGD--EPLEEGDRVRYEVRQSDRG- 303

Query: 64  KYSAENLKLV 73
              A+ ++LV
Sbjct: 304 -PQADRVELV 312


>gi|240171972|ref|ZP_04750631.1| cold shock-like protein B CspB [Mycobacterium kansasii ATCC
          12478]
          Length = 134

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF++ E     G+DV++  SA+  AG+  L  GQ V +    +  
Sbjct: 1  MPTGKVKWYDSEKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 54

Query: 62 NGKYSAENLKLVPK 75
           G   A +LKL+  
Sbjct: 55 RGPQ-ALSLKLIDP 67


>gi|54298263|ref|YP_124632.1| hypothetical protein lpp2321 [Legionella pneumophila str. Paris]
 gi|53752048|emb|CAH13474.1| hypothetical protein lpp2321 [Legionella pneumophila str. Paris]
          Length = 69

 Score = 77.7 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW+N DKG+GFI       SG D F+H S++ S G   L +G  V +   +     
Sbjct: 6  RGKVKWFNKDKGFGFIE-----SSGKDYFVHFSSIQSGGFKTLPDGATVLFKMGKGQKG- 59

Query: 64 KYSAENLKLVP 74
             AE ++++ 
Sbjct: 60 -PQAEEVEVIK 69


>gi|1160331|dbj|BAA03376.1| dbpA murine homologue [Mus musculus]
          Length = 308

 Score = 77.7 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 142 -KGAEAANV 149


>gi|294508943|ref|YP_003565832.1| cold-shock DNA-binding domain protein [Bacillus megaterium QM
          B1551]
 gi|294352247|gb|ADE72569.1| cold-shock DNA-binding domain protein [Bacillus megaterium QM
          B1551]
          Length = 69

 Score = 77.7 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             G+IKWYN +KGYGFIT E  TE    +F+   ++   G  +L EGQ V++D      
Sbjct: 3  RQNGTIKWYNFNKGYGFITREDETE----IFVSYRSIEGNGYADLREGQKVSFDVETGQK 58

Query: 62 NGKYSAENLKLV 73
               A  ++++
Sbjct: 59 G--LEAVRVRVL 68


>gi|311268286|ref|XP_003131986.1| PREDICTED: y-box-binding protein 2-like [Sus scrofa]
          Length = 394

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 98  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 155 -KGAEAANV 162


>gi|301778155|ref|XP_002924500.1| PREDICTED: hypothetical protein LOC100473556 [Ailuropoda
           melanoleuca]
          Length = 199

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 49  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 105

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 106 -KGAEAANV 113


>gi|328545337|ref|YP_004305446.1| Cold-shock DNA-binding domain protein [polymorphum gilvum
          SL003B-26A1]
 gi|326415079|gb|ADZ72142.1| Cold-shock DNA-binding domain protein [Polymorphum gilvum
          SL003B-26A1]
          Length = 66

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++KW++  +G G I P      GDDV +   ++  +G+ +L EGQLV +D      
Sbjct: 1  MNHGNVKWFDSRRGIGAIEPH----EGDDVIVELDSLRRSGIESLKEGQLVAFDMAW--R 54

Query: 62 NGKYSAENLKLV 73
           G+  AE++K++
Sbjct: 55 AGRSLAEDVKVL 66


>gi|3821911|gb|AAC69697.1| major cold shock protein [Lactococcus lactis subsp. lactis]
          Length = 50

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          KG+GFIT    TE G+DVF H SA+ + G   L EGQ VT+D V+    G  +A 
Sbjct: 1  KGFGFIT----TEEGNDVFAHFSAIQTDGFKTLDEGQKVTFD-VEEGPRGPQAAN 50


>gi|182624210|ref|ZP_02951996.1| cold shock protein [Clostridium perfringens D str. JGS1721]
 gi|177910624|gb|EDT72992.1| cold shock protein [Clostridium perfringens D str. JGS1721]
          Length = 69

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 7/71 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
           G +KW+N +K YGFI    S + GDDVF+H S V   G   +L EG+ V++D  + +  
Sbjct: 5  TGIVKWFNQEKCYGFI----SCDEGDDVFVHISQVKEKGPEKDLHEGESVSFDISEGEKG 60

Query: 63 GKYSAENLKLV 73
              A N++ +
Sbjct: 61 --PMATNVQKL 69


>gi|310827425|ref|YP_003959782.1| cold shock protein CspA [Eubacterium limosum KIST612]
 gi|308739159|gb|ADO36819.1| cold shock protein CspA [Eubacterium limosum KIST612]
          Length = 66

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N +KG+GFI      E+G+D+F+  S++      +L +G  V Y+  Q D 
Sbjct: 1  MSNGTVKWFNSNKGFGFIE----GENGEDIFVLFSSIVGGNCESLRDGDKVIYETEQGDR 56

Query: 62 NGKYSAENLKLV 73
            +  A++++LV
Sbjct: 57 --QLRAKSVQLV 66


>gi|291457452|ref|ZP_06596842.1| cold-shock domain protein [Bifidobacterium breve DSM 20213]
 gi|291381287|gb|EFE88805.1| cold-shock domain protein [Bifidobacterium breve DSM 20213]
          Length = 129

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++W++  KGYGFIT    +E G DVFL   A+   G+  L +G  V Y  V +  
Sbjct: 1  MPTGRVRWFDAAKGYGFIT----SEEGKDVFLPAQAL-PTGVNTLRKGAKVEYSVV-DGR 54

Query: 62 NGKYSAENLKLVPKS 76
           G   A ++KL+  S
Sbjct: 55 RGPQ-AMDVKLIASS 68


>gi|146299007|ref|YP_001193598.1| cold-shock DNA-binding domain-containing protein [Flavobacterium
          johnsoniae UW101]
 gi|146153425|gb|ABQ04279.1| cold-shock DNA-binding protein family [Flavobacterium johnsoniae
          UW101]
          Length = 64

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 7/68 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KGYGFIT E   E+G D+F+H S + +     L EG  V+Y+  +   
Sbjct: 1  MRTGTVKFFNESKGYGFITDE---ETGKDIFVHASGINAE---ELREGDRVSYE-EEEGR 53

Query: 62 NGKYSAEN 69
           GK +A+ 
Sbjct: 54 KGKVAAKV 61


>gi|37525576|ref|NP_928920.1| hypothetical protein plu1632 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36785004|emb|CAE13925.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 80

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KW++  KGYGFI+P    + G D+F++R A+A+    +LTEGQ V +  ++  
Sbjct: 14 LKMGRVKWFDERKGYGFISP---QDGGQDIFVNRKAIANTKNKSLTEGQDVEFSIIRKG 69


>gi|61217666|sp|Q9Z2C8|YBOX2_MOUSE RecName: Full=Y-box-binding protein 2; AltName: Full=FRGY2 homolog;
           AltName: Full=Germ cell-specific Y-box-binding protein
 gi|4071321|gb|AAC98673.1| Y-box protein MSY2 [Mus musculus]
          Length = 360

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 98  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154

Query: 61  ANGKYSAENLK 71
              +  A N+ 
Sbjct: 155 KGAR--AANVT 163


>gi|14270383|emb|CAC39436.1| cold-shock domain protein [Oryzias latipes]
          Length = 366

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D ++ 
Sbjct: 4  QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEA 60

Query: 60 DANGKYSAEN 69
           A G  +A  
Sbjct: 61 -AKGSEAANV 69


>gi|296227166|ref|XP_002759249.1| PREDICTED: Y-box-binding protein 2-like, partial [Callithrix
           jacchus]
          Length = 253

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI+   + E   DVF+H++A+        L ++ +G+ V +D V   
Sbjct: 97  GTVKWFNVRNGYGFISRNDTKE---DVFVHQTAIKRNNPRKFLRSVGDGETVEFDVV-GG 152

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 153 EKGPEAANV 161


>gi|189054669|dbj|BAG37519.1| unnamed protein product [Homo sapiens]
          Length = 364

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 96  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152

Query: 61  ANGKYSAENLK 71
                 A N+ 
Sbjct: 153 KG--AEATNVT 161


>gi|309777855|ref|ZP_07672801.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914416|gb|EFP60210.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 65

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +K +N +KGYGFIT     E G DVF H S +   G   +     V +D V+ D   
Sbjct: 2  RGKVKMFNQEKGYGFIT----LEDGKDVFFHYSQLMMEGFKTIDADAEVEFDVVETDRG- 56

Query: 64 KYSAENL 70
             A N+
Sbjct: 57 -LQAHNI 62


>gi|330718236|ref|ZP_08312836.1| cold-shock DNA-binding protein family protein [Leuconostoc fallax
          KCTC 3537]
          Length = 74

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K +  D+GYG+ITP+   E GDD+F+H + +   G  +L +G+ VTY  VQ   
Sbjct: 1  MKIGKVKIWQQDRGYGYITPD---EGGDDIFVHFNGIDMPGFKSLHQGEAVTYVLVQGY- 56

Query: 62 NGKYSAENLKLVPKSSN 78
           G  +A+   +  + ++
Sbjct: 57 KGLQAAQVRPVDSQGAS 73


>gi|301791962|ref|XP_002930949.1| PREDICTED: nuclease-sensitive element-binding protein 1-like,
           partial [Ailuropoda melanoleuca]
          Length = 416

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           RGS+KW+N   GYGFI+   + E   DVF+H+ A+          ++ +G+ V +D VQ 
Sbjct: 70  RGSVKWFNVKNGYGFISRHDTQE---DVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQG 126

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 127 E-RGTEAANV 135


>gi|293400347|ref|ZP_06644493.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291306747|gb|EFE47990.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 65

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K +N +KGYGFIT     E G DVF H S +   G   +     V ++ V+ +   
Sbjct: 2  QGKVKMFNQEKGYGFIT----LEDGRDVFFHYSQLMMEGFKTIDADAKVEFELVETERG- 56

Query: 64 KYSAENL 70
             A N+
Sbjct: 57 -LQAHNI 62


>gi|144900094|emb|CAM76958.1| cold shock DNA-binding domain protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 209

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +K+++ +KG+GF+  +   + G DVF+H  A+  +G+  L  GQ V     Q     
Sbjct: 145 EGVVKFFSAEKGFGFVQTD---QGGKDVFVHIKALERSGIKALETGQRVRCTTTQGQKG- 200

Query: 64  KYSAENLKLV 73
              A+ + L+
Sbjct: 201 -PQADTVALI 209



 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
             ++KW+N  KG+GF+ P   ++   D FLH SA+  AGL  + EG  +  D  Q +   
Sbjct: 53  TATVKWFNASKGFGFVAP---SDGTPDAFLHISALERAGLTQVAEGTTLVVDLGQGNRGP 109

Query: 64  K 64
           +
Sbjct: 110 Q 110


>gi|194246689|ref|YP_002004328.1| Cold shock-like protein [Candidatus Phytoplasma mali]
 gi|193807046|emb|CAP18482.1| Cold shock-like protein [Candidatus Phytoplasma mali]
          Length = 85

 Score = 76.9 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G  +W+N DKG+GF+    S     D+F H++ +   G  +L EG+ V +  VQ +  G
Sbjct: 14 KGVCRWFNKDKGFGFLQKLDS--DSQDIFFHQTDIKCEGFRSLDEGEEVEFTLVQGE-KG 70

Query: 64 KYSAENLKLVPKS 76
            + E ++   +S
Sbjct: 71 PQAIEIVRFTKQS 83


>gi|313901260|ref|ZP_07834747.1| cold shock protein CspB [Clostridium sp. HGF2]
 gi|312953868|gb|EFR35549.1| cold shock protein CspB [Clostridium sp. HGF2]
          Length = 65

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +K +N +KGYGFIT     E G DVF H S +   G   +     V +D V+ D   
Sbjct: 2  RGKVKMFNQEKGYGFIT----LEDGKDVFFHYSQLMMEGFKTIDADAEVEFDLVETDRG- 56

Query: 64 KYSAENL 70
             A N+
Sbjct: 57 -LQAHNI 62


>gi|120405994|ref|YP_955823.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          vanbaalenii PYR-1]
 gi|119958812|gb|ABM15817.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 136

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF++ E     G+DV++  SA+  AG+  L  GQ V +       
Sbjct: 1  MPTGRVKWYDAEKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGVAAGRR 55

Query: 62 NGKYSAENLKLVPK 75
               A +LKL+  
Sbjct: 56 G--PQALSLKLIDP 67


>gi|114666139|ref|XP_511973.2| PREDICTED: y-box-binding protein 2 [Pan troglodytes]
          Length = 365

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 97  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153

Query: 61  ANGKYSAENLK 71
                 A N+ 
Sbjct: 154 KG--AEATNVT 162


>gi|51494815|gb|AAH27785.1| Csda protein [Mus musculus]
          Length = 299

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 142 -KGAEAANV 149


>gi|47059495|ref|NP_620817.2| DNA-binding protein A long isoform [Mus musculus]
 gi|82524639|ref|NP_114185.2| DNA-binding protein A [Rattus norvegicus]
 gi|61212920|sp|Q9JKB3|DBPA_MOUSE RecName: Full=DNA-binding protein A; AltName: Full=Cold shock
           domain-containing protein A; AltName: Full=Y-box protein
           3
 gi|29387050|gb|AAH48242.1| Cold shock domain protein A [Mus musculus]
 gi|76779326|gb|AAI05779.1| Cold shock domain protein A [Rattus norvegicus]
          Length = 361

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 142 -KGAEAANV 149


>gi|325297104|ref|NP_001191560.1| Y-box factor homolog [Aplysia californica]
 gi|1175568|sp|P41824|YBOXH_APLCA RecName: Full=Y-box factor homolog; AltName: Full=APY1
 gi|409419|gb|AAA60373.1| Y-Box factor [Aplysia californica]
          Length = 253

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI  + + E   DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 35 GTVKWFNVKSGYGFINRDDTKE---DVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGE 91

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 92 -KGNEAANV 99


>gi|325478635|gb|EGC81747.1| major cold shock protein CspA [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 66

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +K ++  KG+GFIT E     G+D+F+H S +   G   L   Q+V +D +    
Sbjct: 1  MKRGEVKIFDNKKGFGFITCE-----GEDLFVHYSDIDKDGFKALYPKQIVEFDRIDAPR 55

Query: 62 NGKYSAENLKLVP 74
               A N+K+V 
Sbjct: 56 G--PQAINVKIVE 66


>gi|297563111|ref|YP_003682085.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296847559|gb|ADH69579.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 127

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ DKG+GF+T +     G +VF+H S++   G  +L  GQ V +   +   
Sbjct: 1  MPTGKVKWYDGDKGFGFLTRD----DGGEVFVHSSSL-PPGTTSLRPGQKVDFGVAEGRK 55

Query: 62 NGKYSAENLKLVPKSSN 78
               A  ++L+    +
Sbjct: 56 G--AQALQVRLLEDQHS 70


>gi|10185723|gb|AAG14418.1|AF248546_1 Y-box protein 3 long isoform [Mus musculus]
          Length = 361

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 142 -KGAEAANV 149


>gi|7385223|gb|AAF61741.1| RNA binding protein MSY4 [Mus musculus]
          Length = 361

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 142 -KGAEAANV 149


>gi|296445795|ref|ZP_06887747.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
           OB3b]
 gi|296256623|gb|EFH03698.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
           OB3b]
          Length = 221

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +KW++  KG+GF+    S + G DVF+H S +  +G+ +L EGQ VT   V + A G+
Sbjct: 158 GKVKWFDETKGFGFVQ---SNDGGKDVFVHISILGPSGVNHLAEGQPVTMQVV-DTAKGR 213

Query: 65  YS 66
            +
Sbjct: 214 EA 215



 Score = 53.8 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+ P+KG+GF+          D FLH  AV +AG   L  G  +      +   G+  
Sbjct: 60  VKWFKPEKGFGFVE---LGNGTGDAFLHIGAVQAAGYDALPPGAKLKVTVT-SSVKGQQV 115

Query: 67  AENLKL 72
           +  L++
Sbjct: 116 SRVLEV 121


>gi|40062712|gb|AAR37625.1| cold shock DNA-binding domain protein [uncultured marine
          bacterium 314]
          Length = 67

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +KW+N  KGYGFI  E       DVF+H SA  +A L  L EG  +T++    D
Sbjct: 1  MSIKGKVKWFNGAKGYGFIEREDKE---KDVFVHASAAEAASLQ-LNEGDALTFEVESGD 56

Query: 61 ANGKYSAENLK 71
               SA NL+
Sbjct: 57 KG--PSAVNLQ 65


>gi|254473739|ref|ZP_05087134.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio
          sp. JE062]
 gi|211957125|gb|EEA92330.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio
          sp. JE062]
          Length = 70

 Score = 76.9 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N DKGYGFITP    +   D+F+H +A   +G+    EG  +T+   ++ 
Sbjct: 1  MRQDGTLKFFNHDKGYGFITP---GDGSKDIFVHITAFERSGIAVPAEGAAITFVAEEDR 57

Query: 61 ANGKYSAENLKL 72
                A  ++L
Sbjct: 58 RGRGLQASQIEL 69


>gi|182420146|ref|ZP_02951377.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237668829|ref|ZP_04528813.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182375948|gb|EDT73538.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237657177|gb|EEP54733.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 69

 Score = 76.9 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDA 61
          + G++KWY+ +KGYGFI    S + G+DVF H S +   G   +L EG+ VT+   ++D 
Sbjct: 4  NTGTVKWYDREKGYGFI----SCDEGNDVFAHHSQIKDNGPEKDLKEGESVTFSIEESDK 59

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 60 G--PMAINIQ 67


>gi|57086603|ref|XP_546585.1| PREDICTED: similar to Y-box binding protein-2 (Germ cell specific
           Y-box binding protein) (FRGY2 homolog) [Canis
           familiaris]
          Length = 361

 Score = 76.9 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 98  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 155 -KGAEAANV 162


>gi|160914513|ref|ZP_02076728.1| hypothetical protein EUBDOL_00519 [Eubacterium dolichum DSM 3991]
 gi|158433671|gb|EDP11960.1| hypothetical protein EUBDOL_00519 [Eubacterium dolichum DSM 3991]
          Length = 65

 Score = 76.9 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K +N +KGYGFIT E     G D+F H S +   G   +     V ++ V+ +  G
Sbjct: 2  QGKVKMFNQEKGYGFITRE----GGKDIFFHYSQLVMEGYKTIDPEASVEFELVETE-RG 56

Query: 64 KYSAENLKL 72
            +   ++L
Sbjct: 57 PQAQHIVRL 65


>gi|156415990|ref|NP_057066.2| Y-box-binding protein 2 [Homo sapiens]
 gi|116242847|sp|Q9Y2T7|YBOX2_HUMAN RecName: Full=Y-box-binding protein 2; AltName: Full=Contrin;
           AltName: Full=DNA-binding protein C; Short=Dbpc;
           AltName: Full=Germ cell-specific Y-box-binding protein;
           AltName: Full=MSY2 homolog
 gi|21707292|gb|AAH33800.1| Y box binding protein 2 [Homo sapiens]
          Length = 364

 Score = 76.9 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 96  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152

Query: 61  ANGKYSAENLK 71
                 A N+ 
Sbjct: 153 KG--AEATNVT 161


>gi|4837737|gb|AAD30662.1| germ cell specific Y-box binding protein [Homo sapiens]
 gi|28838612|gb|AAH47760.1| Y box binding protein 2 [Homo sapiens]
 gi|119610629|gb|EAW90223.1| Y box binding protein 2, isoform CRA_a [Homo sapiens]
 gi|119610630|gb|EAW90224.1| Y box binding protein 2, isoform CRA_a [Homo sapiens]
          Length = 364

 Score = 76.9 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 96  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152

Query: 61  ANGKYSAENLK 71
                 A N+ 
Sbjct: 153 KG--AEATNVT 161


>gi|15828153|ref|NP_302416.1| cold shock protein [Mycobacterium leprae TN]
 gi|221230630|ref|YP_002504046.1| putative cold shock protein [Mycobacterium leprae Br4923]
 gi|2440094|emb|CAB16651.1| small cold-shock protein [Mycobacterium leprae]
 gi|13093707|emb|CAC31102.1| probable cold shock protein [Mycobacterium leprae]
 gi|219933737|emb|CAR72244.1| probable cold shock protein [Mycobacterium leprae Br4923]
          Length = 136

 Score = 76.9 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ DKG+GF++ E     G+DV++  SA+  AG+  L  GQ V +    +  
Sbjct: 1  MPTGKVKWYDADKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGVA-SGR 54

Query: 62 NGKYSAENLKLVPK 75
           G   A +LKL+  
Sbjct: 55 RGPQ-ALSLKLIDP 67


>gi|308805262|ref|XP_003079943.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
 gi|116058400|emb|CAL53589.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
          Length = 125

 Score = 76.9 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 10/77 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT------EGQLVTYD 55
            RG +KW+N  KG+G+ITP+   +   DVF+H+SA+   G           +G  V +D
Sbjct: 10 RRRGKVKWFNCTKGFGYITPD---DGEPDVFVHQSALKMEGFRRTDGRRFATQGDSVEFD 66

Query: 56 YV-QNDANGKYSAENLK 71
             ++  + +  A  + 
Sbjct: 67 VEHESPTDERLKAVCVT 83


>gi|313221374|emb|CBY32128.1| unnamed protein product [Oikopleura dioica]
 gi|313241319|emb|CBY33595.1| unnamed protein product [Oikopleura dioica]
          Length = 270

 Score = 76.9 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-----LTEGQLVTYDYVQ 58
            G++KW+N  +G+GFI      + G DVFLH+S V  +G  +     L  G+ V +D  Q
Sbjct: 86  TGTVKWFNISRGFGFIER---NDGGADVFLHQSGVVGSGRRHRFSLFLKGGEEVEFDVAQ 142

Query: 59  NDANGKYSAE 68
                +  A 
Sbjct: 143 GAKGPEAVAV 152


>gi|313236956|emb|CBY12203.1| unnamed protein product [Oikopleura dioica]
          Length = 270

 Score = 76.9 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-----LTEGQLVTYDYVQN 59
           G++KW+N  +G+GFI      + G DVFLH+S V  +G  +     L  G+ V +D  Q 
Sbjct: 87  GTVKWFNISRGFGFIER---NDGGADVFLHQSGVVGSGRRHRFSLFLKGGEEVEFDVAQG 143

Query: 60  DANGKYSAE 68
               +  A 
Sbjct: 144 AKGPEAVAV 152


>gi|147904000|ref|NP_001091595.1| Y-box-binding protein 2 [Bos taurus]
 gi|146186879|gb|AAI40615.1| YBX2 protein [Bos taurus]
 gi|296476769|gb|DAA18884.1| Y box binding protein 2 [Bos taurus]
          Length = 360

 Score = 76.9 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 98  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 155 -KGAEAANV 162


>gi|288959293|ref|YP_003449634.1| cold shock protein [Azospirillum sp. B510]
 gi|288911601|dbj|BAI73090.1| cold shock protein [Azospirillum sp. B510]
          Length = 245

 Score = 76.9 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW+N  KGYGF  P+   + G DVF+   A+ SAGL  L +GQ V     Q +    
Sbjct: 182 GTVKWFNGGKGYGFAQPD---DGGRDVFIPARALESAGLRGLDDGQRVRMTVRQTEKG-- 236

Query: 65  YSAENLKL 72
             A +LK+
Sbjct: 237 MEAVSLKV 244



 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            ++KW+NP++GYGF+      +SG D  L  S V  AG   L +G  V  D V+ D  G
Sbjct: 21 TATVKWFNPERGYGFV---KVGDSGKDALLPASIVVPAGHTTLPDGATVVVDIVE-DRKG 76

Query: 64 KY 65
          + 
Sbjct: 77 QQ 78


>gi|109113073|ref|XP_001107460.1| PREDICTED: y-box-binding protein 2-like [Macaca mulatta]
          Length = 359

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 97  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 154 -KGAEAANV 161


>gi|284038260|ref|YP_003388190.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
 gi|283817553|gb|ADB39391.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
          Length = 198

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++K++N  KG+GFI  + S   GDD+F+H SA+    +  + E   V +   ++  
Sbjct: 136 LQTGTVKFFNETKGFGFIKSDSS---GDDIFVHVSAL----IDQIHENDKVRFSI-EHGR 187

Query: 62  NGKYSAENLKLV 73
            G  +A N+KL+
Sbjct: 188 KG-LNAVNIKLL 198


>gi|183984628|ref|YP_001852919.1| cold shock-like protein B CspB [Mycobacterium marinum M]
 gi|183177954|gb|ACC43064.1| cold shock-like protein B CspB [Mycobacterium marinum M]
          Length = 134

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ DKG+GF++ E     G+DV++  SA+  AG+  L  GQ V +    +  
Sbjct: 1  MPTGKVKWYDSDKGFGFLSQE----EGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 54

Query: 62 NGKYSAENLKLVPK 75
           G   A +LKL+  
Sbjct: 55 RGPQ-ALSLKLLDP 67


>gi|158423560|ref|YP_001524852.1| DNA-binding cold-shock protein [Azorhizobium caulinodans ORS 571]
 gi|158330449|dbj|BAF87934.1| DNA-binding cold-shock protein [Azorhizobium caulinodans ORS 571]
          Length = 192

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++  KGYGFI P+   + G DV +H + +   G     EG  +  + V+  + G 
Sbjct: 31 GAVKWFDAAKGYGFIVPD---DGGPDVLVHVTCLRRDGFTTAMEGARIVCEAVRR-SKGL 86

Query: 65 YSAENLKL 72
           +   L L
Sbjct: 87 QAFRVLSL 94



 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--ND 60
            R ++KW+N  +G+GF++     E   D+F+H   +   GL  L  GQ V    V+  + 
Sbjct: 120 ERATVKWFNRMRGFGFLS---KGEGTPDIFVHMETLRQQGLTELRPGQSV---LVRYGDG 173

Query: 61  ANGKYSAEN 69
             G  + E 
Sbjct: 174 PKGLMATEV 182


>gi|3821921|gb|AAC69702.1| major cold shock protein [Lactobacillus acidophilus]
          Length = 50

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          KG+GFIT     E G DVF+H SA+   G  +L EGQ V+YD  Q+D  G  +A 
Sbjct: 1  KGFGFIT----GEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSD-RGPQAAN 50


>gi|117956377|ref|NP_058571.2| Y-box-binding protein 2 [Mus musculus]
 gi|56800107|emb|CAI35155.1| Y box protein 2 [Mus musculus]
 gi|187954905|gb|AAI41113.1| Y box protein 2 [Mus musculus]
          Length = 359

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 97  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 154 -KGAEAANV 161


>gi|532211|gb|AAC34193.1| Y-box binding protein [Mus musculus]
          Length = 274

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 71  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 127

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 128 -KGAEAANV 135


>gi|62656341|ref|XP_220618.3| PREDICTED: Y box protein 2 [Rattus norvegicus]
 gi|109491139|ref|XP_001079683.1| PREDICTED: Y box binding protein 2 [Rattus norvegicus]
          Length = 359

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 97  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 154 -KGAEAANV 161


>gi|281344168|gb|EFB19752.1| hypothetical protein PANDA_021601 [Ailuropoda melanoleuca]
          Length = 310

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           RGS+KW+N   GYGFI+   + E   DVF+H+ A+          ++ +G+ V +D VQ 
Sbjct: 37  RGSVKWFNVKNGYGFISRHDTQE---DVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQG 93

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 94  E-RGTEAANV 102


>gi|255078512|ref|XP_002502836.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299]
 gi|226518102|gb|ACO64094.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299]
          Length = 305

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           ++G + W+N  KG+GF+T +   +   DVF+H+S + + G  +L + + V ++  +   +
Sbjct: 44  YKGVVNWFNVAKGFGFVTRD---DGVGDVFVHQSDIYAEGFRSLRDQEPVEFEL-EPMGD 99

Query: 63  GKYSAENLK 71
           G+Y A  + 
Sbjct: 100 GRYKAVKVT 108


>gi|296271245|ref|YP_003653877.1| cold-shock DNA-binding domain-containing protein [Thermobispora
          bispora DSM 43833]
 gi|296094032|gb|ADG89984.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM
          43833]
          Length = 131

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF+T +     G +VF+H S+V   G+  L  GQ V +   ++  
Sbjct: 1  MPSGKVKWYDAEKGFGFLTRD----DGGEVFVH-SSVLPKGVTALKPGQKVEFGIAESRR 55

Query: 62 NGKYSAENLKLVPKSS 77
               A +++++   +
Sbjct: 56 G--QQALSVRIIEPPT 69


>gi|328860156|gb|EGG09263.1| hypothetical protein MELLADRAFT_104398 [Melampsora
          larici-populina 98AG31]
          Length = 334

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASA-GLFNLTEGQLVTYDYVQN 59
            +G  K++N  KG+GFI  +   E G  +VF+H +++    G  +L EG+ V Y  V  
Sbjct: 29 RRKGVCKFFNSQKGFGFINDDHPDELGNQEVFVHYTSIGGKGGFRSLAEGEEVEY-VVSP 87

Query: 60 DANGKYSAEN 69
             G  + E 
Sbjct: 88 GHKGFQATEV 97


>gi|296138557|ref|YP_003645800.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
          DSM 20162]
 gi|296026691|gb|ADG77461.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
          DSM 20162]
          Length = 139

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF++ E     G+DV++  SA+  +G   L +GQ V +       
Sbjct: 1  MPTGKVKWYDAEKGFGFLSQE----GGEDVYVRSSAL-PSGTDELKQGQRVEFSMAAGRR 55

Query: 62 NGKYSAENLKLVPKS 76
               A  + ++  +
Sbjct: 56 G--PQALTVTVLEPA 68


>gi|119870591|ref|YP_940543.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          KMS]
 gi|126437423|ref|YP_001073114.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          JLS]
 gi|119696680|gb|ABL93753.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS]
 gi|126237223|gb|ABO00624.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS]
          Length = 136

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF++ E     G+DV++  SA+  AG+  L  GQ V +       
Sbjct: 1  MPTGRVKWYDAEKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGVA-AGR 54

Query: 62 NGKYS 66
           G  +
Sbjct: 55 RGPQA 59


>gi|54026194|ref|YP_120436.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54017702|dbj|BAD59072.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 68

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ W++  KG+GFI  +G    G DVF+    +   G  +L EGQ V +D  Q+  
Sbjct: 1  MVQGTVLWFDSKKGFGFIAQDG---GGADVFVDYLELVGGGFRSLHEGQRVRFDLRQS-K 56

Query: 62 NGKYS 66
          +G  +
Sbjct: 57 SGPEA 61


>gi|332668957|ref|YP_004451965.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332337995|gb|AEE44578.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
          484]
          Length = 312

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
          + +G+++W++ ++G+GF++     +  +D+F+H S +    G   L EGQ V ++  + D
Sbjct: 1  MPQGTVRWFDAERGFGFLS---LGDEAEDLFVHASEIVGDDGPRVLREGQEVEFEVGEGD 57

Query: 61 ANGKYSAENLKLV 73
                A  +++V
Sbjct: 58 RG--PVARRVRVV 68



 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 6/73 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++ WY+PDKG+GF++P+   + G+D+F+H  ++    L  L EG  VTYD    D    
Sbjct: 157 GTVTWYDPDKGFGFVSPD---DGGEDLFVHARSLVGD-LSELVEGDRVTYDVAAGDRG-- 210

Query: 65  YSAENLKLVPKSS 77
             A +++L   S+
Sbjct: 211 PQARDVRLAGGST 223



 Score = 67.7 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++ WY P KGYGF+ P+G    G ++F+H SA+   G+    EGQ V +  V  +   +
Sbjct: 81  GTVSWYEPTKGYGFVGPDG---GGPEIFVHSSAIVGGGVIT--EGQRVAFLVVPGEKGPQ 135



 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +  ++PD+G+GFITP+     G D+F+H S V +     L EG  V +   Q+D    
Sbjct: 251 GVVARFDPDRGFGFITPDA---GGPDLFVHVSVVRNG--EVLEEGDRVRFKVRQSDRG-- 303

Query: 65  YSAENLKLV 73
             A+ ++L+
Sbjct: 304 PQADRVELL 312


>gi|23336360|ref|ZP_00121581.1| COG1278: Cold shock proteins [Bifidobacterium longum DJO10A]
 gi|23464635|ref|NP_695238.1| cold shock protein [Bifidobacterium longum NCC2705]
 gi|189438870|ref|YP_001953951.1| cold shock protein [Bifidobacterium longum DJO10A]
 gi|227546733|ref|ZP_03976782.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
          55813]
 gi|239620709|ref|ZP_04663740.1| cold shock protein [Bifidobacterium longum subsp. infantis CCUG
          52486]
 gi|296454603|ref|YP_003661746.1| putative cold-shock DNA-binding domain-containing protein
          [Bifidobacterium longum subsp. longum JDM301]
 gi|317481709|ref|ZP_07940741.1| cold-shock' DNA-binding domain-containing protein
          [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689671|ref|YP_004209405.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F]
 gi|322691632|ref|YP_004221202.1| cold shock protein [Bifidobacterium longum subsp. longum JCM
          1217]
 gi|23325192|gb|AAN23874.1| cold shock protein [Bifidobacterium longum NCC2705]
 gi|32700058|gb|AAP86682.1| cold shock protein B [Bifidobacterium longum subsp. infantis]
 gi|189427305|gb|ACD97453.1| Cold shock protein [Bifidobacterium longum DJO10A]
 gi|227212695|gb|EEI80576.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
          55813]
 gi|239516285|gb|EEQ56152.1| cold shock protein [Bifidobacterium longum subsp. infantis CCUG
          52486]
 gi|291516230|emb|CBK69846.1| cold-shock DNA-binding protein family [Bifidobacterium longum
          subsp. longum F8]
 gi|296184034|gb|ADH00916.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
          longum subsp. longum JDM301]
 gi|316916823|gb|EFV38213.1| cold-shock' DNA-binding domain-containing protein
          [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456488|dbj|BAJ67110.1| cold shock protein [Bifidobacterium longum subsp. longum JCM
          1217]
 gi|320461007|dbj|BAJ71627.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F]
          Length = 129

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++W++  KGYGFIT    +E G DVFL   A+   G+  L +G  V Y  V +  
Sbjct: 1  MPTGRVRWFDAAKGYGFIT----SEEGKDVFLPAQAL-PTGVTTLRKGAKVEYSVV-DGR 54

Query: 62 NGKYSAENLKLVPKS 76
           G   A +++L+  +
Sbjct: 55 RGPQ-AMDVRLIASA 68


>gi|111226076|ref|YP_716870.1| CspB [Frankia alni ACN14a]
 gi|111153608|emb|CAJ65366.1| CspB [Frankia alni ACN14a]
          Length = 131

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ DKG+GF++ +     G DVF+H++A+  AG+  L  G  V +       
Sbjct: 1  MPTGKVKWFDVDKGFGFLSRD----DGGDVFVHKAAL-PAGVERLKPGDRVEFGVAAGRR 55

Query: 62 NGKYSAENLKLVPKS 76
            +  +  L   P S
Sbjct: 56 GDQALSVRLLAAPPS 70


>gi|152967523|ref|YP_001363307.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
          SRS30216]
 gi|151362040|gb|ABS05043.1| putative cold-shock DNA-binding domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 152

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KW++ DKG+GF+      E G +VF+H SA+  AG   L++G  V +  VQ   
Sbjct: 24 VPTGKVKWFDADKGFGFLA----AEDGAEVFVHASAL-PAGTTTLSKGSRVEFGVVQG-- 76

Query: 62 NGKYSAENLKLVPK 75
               A +++L+  
Sbjct: 77 KNGTQALSVRLLDP 90


>gi|17298531|gb|AAL38166.1| putative cold shock protein [Bradyrhizobium japonicum]
          Length = 56

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          G+GFITP+   +   DVF+H  A+ + G  +L EGQ V++   ++ A G  +A  
Sbjct: 3  GFGFITPD---DGSKDVFVHFXAIQNDGYKSLDEGQKVSFTI-ESGAKGPAAANV 53


>gi|118616153|ref|YP_904485.1| cold shock-like protein B CspB [Mycobacterium ulcerans Agy99]
 gi|118568263|gb|ABL03014.1| cold shock-like protein B CspB [Mycobacterium ulcerans Agy99]
          Length = 184

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V  G +KWY+ DKG+GF++ E     G+DV++  SA+  AG+  L  GQ V +    +  
Sbjct: 51  VPTGKVKWYDSDKGFGFLSQE----EGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 104

Query: 62  NGKYSAENLKLVPK 75
            G   A +LKL+  
Sbjct: 105 RGPQ-ALSLKLLDP 117


>gi|254520602|ref|ZP_05132658.1| cold shock protein [Clostridium sp. 7_2_43FAA]
 gi|226914351|gb|EEH99552.1| cold shock protein [Clostridium sp. 7_2_43FAA]
          Length = 69

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 7/72 (9%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDA 61
          + G++KWY+ +KGYGFI    S   G+DVF+H S +   G   +L EG+ +T+D  +N+ 
Sbjct: 4  YTGTVKWYSMEKGYGFI----SCNEGNDVFVHHSQIKEKGPEKDLHEGENITFDIQENEK 59

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 60 G--PMAVNVQKL 69


>gi|148235020|ref|NP_001091543.1| DNA-binding protein A [Bos taurus]
 gi|146186540|gb|AAI40645.1| CSDA protein [Bos taurus]
 gi|296487252|gb|DAA29365.1| cold shock domain protein A [Bos taurus]
          Length = 376

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 99  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 155

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 156 -KGAEAANV 163


>gi|291390788|ref|XP_002711897.1| PREDICTED: cold shock domain protein A short-like [Oryctolagus
           cuniculus]
          Length = 784

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N  KGYGFI    S E   DVF+H +A+        L ++ +G+ V  D V+  
Sbjct: 572 GTVKWFNVKKGYGFIHRHDSKE---DVFVHHTAITKNNPRKYLHSVGDGETVELDVVEG- 627

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 628 VKGAEAANV 636


>gi|22126652|ref|NP_670075.1| cold shock-like protein [Yersinia pestis KIM 10]
 gi|45441022|ref|NP_992561.1| cold shock-like protein [Yersinia pestis biovar Microtus str.
          91001]
 gi|149366655|ref|ZP_01888689.1| cold shock-like protein [Yersinia pestis CA88-4125]
 gi|21959665|gb|AAM86326.1|AE013880_6 cold shock protein [Yersinia pestis KIM 10]
 gi|45435881|gb|AAS61438.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001]
 gi|149291029|gb|EDM41104.1| cold shock-like protein [Yersinia pestis CA88-4125]
          Length = 77

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  +GYGFI+P    + G DV+++++A+A+    +L EGQ V +   ++  
Sbjct: 11 LKMGRVKWFNQSEGYGFISPH---DGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRS-I 66

Query: 62 NGKYSAENL 70
          +G  +A+ +
Sbjct: 67 HGPSAADVI 75


>gi|6166111|sp|Q62764|DBPA_RAT RecName: Full=DNA-binding protein A; AltName: Full=Cold shock
           domain-containing protein A; AltName: Full=Muscle Y-box
           protein YB2; AltName: Full=RYB-A; AltName:
           Full=Y-box-binding protein A
 gi|1101884|gb|AAB60520.1| YB2 [Rattus norvegicus]
 gi|1589174|prf||2210343A nicotinic acetylcholine receptor repressor
          Length = 361

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 142 -KGAEAANV 149


>gi|226474410|emb|CAX71691.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 203

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|225013100|ref|ZP_03703514.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
          MS024-2A]
 gi|225002758|gb|EEG40740.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
          MS024-2A]
          Length = 63

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT +   ESG+DVF+H SA+       L EG  V Y   ++   G
Sbjct: 2  TGTVKFFNEAKGFGFITND---ESGEDVFVHISALNGV---TLREGAKVEY-VEEDGKKG 54

Query: 64 KYS 66
          K +
Sbjct: 55 KQA 57


>gi|152998000|ref|YP_001342835.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp.
          MWYL1]
 gi|150838924|gb|ABR72900.1| putative cold-shock DNA-binding domain protein [Marinomonas sp.
          MWYL1]
          Length = 85

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  KG GFI  E  +    DVF+H  ++   G  +L +GQLV++     D   
Sbjct: 5  TGKVKWFNDAKGVGFIKREEDS----DVFVHYKSIVCDGHKSLRKGQLVSFVLSTTDFG- 59

Query: 64 KYSAENLKLVPKSS 77
             A +++L  ++ 
Sbjct: 60 -LQAMDVRLEKEAQ 72


>gi|109095654|ref|XP_001118505.1| PREDICTED: DNA-binding protein A-like [Macaca mulatta]
          Length = 407

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 128 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 184

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 185 -KGAEAANV 192


>gi|295704910|ref|YP_003597985.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294802569|gb|ADF39635.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 72

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          GFI      E GDDVF+H S++ S G  +L EGQ VT+D  Q    G  +A   K+
Sbjct: 21 GFIE----IEGGDDVFVHFSSIQSEGFKSLDEGQKVTFDIEQGQ-RGAQAANVHKV 71


>gi|328850349|gb|EGF99515.1| hypothetical protein MELLADRAFT_94308 [Melampsora larici-populina
           98AG31]
          Length = 432

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 5   GSIKWYNPDKGYGFITPEGST-------ESGDDVFLHRSAVAS--AGLFNLTEGQLVTYD 55
           G  K++N  KG+GFI  +          + G D+F+H S +    AG  +L +G+ V Y 
Sbjct: 99  GFCKFFNAGKGFGFIQDDNPAELPTMDGDPGTDIFVHYSCITRCDAGFKSLLDGEKVEY- 157

Query: 56  YVQNDANGKYSAENLK 71
            V   +N   +A ++ 
Sbjct: 158 -VLGRSNKGLAALDIT 172


>gi|300173064|ref|YP_003772230.1| cold shock protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299887443|emb|CBL91411.1| Cold shock protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 74

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K +  ++GYG+ITP+   + G+DVF+H + +   G  +L +G+ V Y  VQ   
Sbjct: 1  MKTGIVKIWQKERGYGYITPD---DGGEDVFVHFNGIDMIGFKSLIQGEKVNYVLVQGFK 57

Query: 62 NGKYSAENLKLVPKSS 77
          N  Y A  +  + K +
Sbjct: 58 N--YQAAQVSPIMKKA 71


>gi|194332739|ref|NP_001123667.1| Y box binding protein 2 [Xenopus (Silurana) tropicalis]
 gi|187469386|gb|AAI66950.1| LOC100170415 protein [Xenopus (Silurana) tropicalis]
          Length = 337

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 43  QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 99

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 100 E-KGAEAANV 108


>gi|262089577|gb|ACY24676.1| hypothetical protein [uncultured organism]
          Length = 192

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K +N ++G+GFI  +   + G D+F+H SA A  G     EG+ +T++  + D NGK
Sbjct: 8  GKLKKWNAERGFGFIVAD---DGGQDIFVHISAFARDG-RQPAEGEALTFEI-EPDRNGK 62

Query: 65 YSAENLKLV 73
           SA  ++ V
Sbjct: 63 RSAVRVRRV 71


>gi|126340161|ref|XP_001372013.1| PREDICTED: similar to YB2 [Monodelphis domestica]
          Length = 320

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D V+ +
Sbjct: 46  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 102

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 103 -KGAEAANV 110


>gi|41406908|ref|NP_959744.1| CspB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395258|gb|AAS03127.1| CspB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 138

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ DKG+GF++ E     G+DV++  SA+  AG+  L  GQ V +    +  
Sbjct: 4  VPTGKVKWYDADKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 57

Query: 62 NGKYSAENLKLVPK 75
           G   A +LKL+  
Sbjct: 58 RGPQ-ALSLKLIEP 70


>gi|307610887|emb|CBX00504.1| cold shock-like protein cspE [Legionella pneumophila 130b]
          Length = 56

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          RG +KW+N  KG+GFI       +G D F+H SA+   G  NL +G  V +   Q 
Sbjct: 6  RGKVKWFNKAKGFGFIE-----SNGKDYFVHFSAIQGNGFKNLPDGARVLFKVGQG 56


>gi|51105064|gb|AAT97092.1| Y-box factor-like protein [Lymnaea stagnalis]
          Length = 219

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI  + + E   DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 33 TGTVKWFNVKSGYGFINRDDTKE---DVFVHQTAIIKNNPRKYLRSVGDGEKVEFDVVEG 89

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 90 E-KGNEAANV 98


>gi|194217599|ref|XP_001918171.1| PREDICTED: similar to LOC614429 protein [Equus caballus]
          Length = 291

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 43  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 99

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 100 -KGAEAANV 107


>gi|148688939|gb|EDL20886.1| cold shock domain protein A, isoform CRA_b [Mus musculus]
          Length = 292

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 142 -KGAEAANV 149


>gi|3821915|gb|AAC69699.1| major cold shock protein [Lactococcus lactis subsp. cremoris]
 gi|3821919|gb|AAC69701.1| major cold shock protein [Lactococcus lactis subsp. cremoris]
          Length = 50

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          KG+GFIT    +E G D+F H SA+ S G   L EGQ V +D V+    G  +A 
Sbjct: 1  KGFGFIT----SEEGKDLFAHFSAIQSDGFKTLDEGQKVEFD-VEEGQRGPQAAN 50


>gi|51595763|ref|YP_069954.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953]
 gi|108806689|ref|YP_650605.1| cold shock-like protein [Yersinia pestis Antiqua]
 gi|108812740|ref|YP_648507.1| cold shock-like protein [Yersinia pestis Nepal516]
 gi|145599569|ref|YP_001163645.1| cold shock-like protein [Yersinia pestis Pestoides F]
 gi|153948246|ref|YP_001401539.1| cold shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|162421137|ref|YP_001606435.1| cold shock DNA-binding domain-containing protein [Yersinia pestis
          Angola]
 gi|165924490|ref|ZP_02220322.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165938972|ref|ZP_02227525.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|166009860|ref|ZP_02230758.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166211781|ref|ZP_02237816.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167399726|ref|ZP_02305244.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167419851|ref|ZP_02311604.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167424222|ref|ZP_02315975.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|167469384|ref|ZP_02334088.1| cold shock protein [Yersinia pestis FV-1]
 gi|170024887|ref|YP_001721392.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186894842|ref|YP_001871954.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|218928546|ref|YP_002346421.1| cold shock-like protein [Yersinia pestis CO92]
 gi|229841368|ref|ZP_04461527.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str.
          PEXU2]
 gi|229843473|ref|ZP_04463619.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str.
          India 195]
 gi|229895846|ref|ZP_04511016.1| Cold shock-like protein [Yersinia pestis Pestoides A]
 gi|229903148|ref|ZP_04518261.1| Cold shock-like protein [Yersinia pestis Nepal516]
 gi|270486942|ref|ZP_06204016.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|51589045|emb|CAH20663.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953]
 gi|108776388|gb|ABG18907.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108778602|gb|ABG12660.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
 gi|115347157|emb|CAL20050.1| cold shock-like protein [Yersinia pestis CO92]
 gi|145211265|gb|ABP40672.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|152959741|gb|ABS47202.1| cold shock DNA-binding domain protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|162353952|gb|ABX87900.1| cold shock DNA-binding domain protein [Yersinia pestis Angola]
 gi|165913119|gb|EDR31743.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|165923550|gb|EDR40682.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. F1991016]
 gi|165991256|gb|EDR43557.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166207552|gb|EDR52032.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|166962592|gb|EDR58613.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Orientalis str. MG05-1020]
 gi|167050434|gb|EDR61842.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167057071|gb|EDR66834.1| cold shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|169751421|gb|ACA68939.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186697868|gb|ACC88497.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|229678918|gb|EEO75021.1| Cold shock-like protein [Yersinia pestis Nepal516]
 gi|229689820|gb|EEO81881.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str.
          India 195]
 gi|229697734|gb|EEO87781.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str.
          PEXU2]
 gi|229700769|gb|EEO88798.1| Cold shock-like protein [Yersinia pestis Pestoides A]
 gi|270335446|gb|EFA46223.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27]
 gi|320015742|gb|ADV99313.1| Cold shock-like protein [Yersinia pestis biovar Medievalis str.
          Harbin 35]
          Length = 69

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  +GYGFI+P    + G DV+++++A+A+    +L EGQ V +   ++  
Sbjct: 3  LKMGRVKWFNQSEGYGFISPH---DGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRS-I 58

Query: 62 NGKYSAENL 70
          +G  +A+ +
Sbjct: 59 HGPSAADVI 67


>gi|326912755|ref|XP_003202712.1| PREDICTED: nuclease-sensitive element-binding protein 1-like
           [Meleagris gallopavo]
          Length = 253

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 45  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 101

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 102 -KGAEAANV 109


>gi|291457446|ref|ZP_06596836.1| conserved domain protein [Bifidobacterium breve DSM 20213]
 gi|51094320|gb|AAT95330.1| CspA [Bifidobacterium breve UCC2003]
 gi|159024131|gb|ABW87310.1| cold shock protein [Bifidobacterium breve]
 gi|291381281|gb|EFE88799.1| conserved domain protein [Bifidobacterium breve DSM 20213]
          Length = 79

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
          + +G++K++   KG+GFI P+   + G+DVF+H + +   G       L EG  V Y   
Sbjct: 1  MAQGTVKFFLAKKGFGFIQPD---DGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPA 57

Query: 58 QNDANGKYSAENLKLVPKSS 77
           +   G  + E +KL    +
Sbjct: 58 PSG-KGTQAKEVVKLSSGEA 76


>gi|325918449|ref|ZP_08180573.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325535344|gb|EGD07216.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria
          ATCC 35937]
          Length = 57

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
          N  KG+GFI+ E    +G+DVF+H  A+   G  +L EGQ V++  VQ        A+ +
Sbjct: 1  NDAKGFGFISRE----NGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQKG--LQADAV 54

Query: 71 KLV 73
          ++V
Sbjct: 55 QVV 57


>gi|288922018|ref|ZP_06416226.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
 gi|288346634|gb|EFC80955.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
          Length = 131

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ D+G+GF++ +     GDDVF+H++A+  AG+  L  G  V +       
Sbjct: 1  MPTGKVKWFDVDRGFGFLSRD----DGDDVFVHKAAL-PAGVDRLKPGDRVEFGVAAGRR 55

Query: 62 NGKYSAENLKLVPKS 76
            +  +  +   P S
Sbjct: 56 GDQALSVRILAAPPS 70


>gi|20806532|ref|NP_035863.1| DNA-binding protein A short isoform [Mus musculus]
 gi|10185725|gb|AAG14419.1|AF248547_1 Y-box protein 3 short isoform [Mus musculus]
 gi|38382730|gb|AAH62377.1| Cold shock domain protein A [Mus musculus]
          Length = 292

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 85  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 142 -KGAEAANV 149


>gi|86743101|ref|YP_483501.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3]
 gi|86569963|gb|ABD13772.1| cold-shock DNA-binding protein family [Frankia sp. CcI3]
          Length = 131

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ DKG+GF++ +     G DVF+H++A+  AG+  L  G  V +       
Sbjct: 1  MPTGKVKWFDVDKGFGFLSRD----DGGDVFVHKAAL-PAGVDRLKPGDRVEFGVAAGRR 55

Query: 62 NGKYSAENLKLVPKS 76
            +  +  L   P S
Sbjct: 56 GDQALSVRLLTAPPS 70


>gi|268590149|ref|ZP_06124370.1| cold-shock DNA-binding domain protein [Providencia rettgeri DSM
          1131]
 gi|291314424|gb|EFE54877.1| cold-shock DNA-binding domain protein [Providencia rettgeri DSM
          1131]
          Length = 71

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H G +KW++  +GYGFI+P      GDDVF+   ++A+  + +L EGQ V +   +N +
Sbjct: 5  LHMGRVKWFDAKEGYGFISP---FNGGDDVFVTTKSIANKKIKSLFEGQNVEFSVTRN-S 60

Query: 62 NGKYSAENL 70
          +G  +A+ +
Sbjct: 61 DGITAADVI 69


>gi|158934472|emb|CAL64870.1| putative RlYB2 protein [Rana lessonae]
          Length = 327

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 37  QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 93

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 94  E-KGAEAANV 102


>gi|332849851|ref|XP_001142318.2| PREDICTED: y-box-binding protein 2-like [Pan troglodytes]
          Length = 333

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L  + +G+ V +D V+ +
Sbjct: 65  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQAAIKRNNPRKFLRTVGDGETVEFDVVEGE 121

Query: 61  ANGKYSAENLK 71
                 A N+ 
Sbjct: 122 KG--AEATNVT 130


>gi|4071323|gb|AAC98674.1| Y-box protein MSY2 isoform a [Mus musculus]
          Length = 282

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 20 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 76

Query: 61 ANGKYSAENLK 71
             +  A N+ 
Sbjct: 77 KGAR--AANVT 85


>gi|255586301|ref|XP_002533802.1| cellular nucleic acid binding protein, putative [Ricinus
          communis]
 gi|223526275|gb|EEF28589.1| cellular nucleic acid binding protein, putative [Ricinus
          communis]
          Length = 266

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
          RG +  ++  KG+GFI P+   + G+D+F+H SA+ S G   +L E  +V +    +D N
Sbjct: 15 RGKVVRFSDRKGFGFIKPD---DGGEDLFVHHSAIKSDGRYRSLAEDDVVEFTVSLSDDN 71

Query: 63 GKYSAENLK 71
           KY A ++ 
Sbjct: 72 -KYQAVDVT 79


>gi|324997476|ref|ZP_08118588.1| cold-shock DNA-binding protein family [Pseudonocardia sp. P1]
          Length = 128

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF++ +     G+DV++ ++A+  +G   L  GQ V +   +   
Sbjct: 1  MPTGRVKWYDAEKGFGFLSQD----GGEDVYVRKAAL-PSGTEALKSGQRVEFGMAEGRR 55

Query: 62 NGKYSAENLKLVPKSSN 78
               A ++++V K ++
Sbjct: 56 G--PQALSVRVVEKQAS 70


>gi|110834773|ref|YP_693632.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2]
 gi|110647884|emb|CAL17360.1| cold-shock domain family protein [Alcanivorax borkumensis SK2]
          Length = 76

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 6/68 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           RG +KW+NP+KG+GFI     T+SG+++F+H  AV + G  +L  G  V +D   +D  
Sbjct: 11 QRGEVKWFNPNKGFGFI----LTDSGEELFVHFKAVQNGGRRSLRTGTKVRFDTRMSDRG 66

Query: 63 GKYSAENL 70
              A+N+
Sbjct: 67 --EQADNV 72


>gi|148822079|ref|YP_001286833.1| cold shock protein B cspB [Mycobacterium tuberculosis F11]
 gi|253800107|ref|YP_003033108.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 1435]
 gi|254231179|ref|ZP_04924506.1| cold shock-like protein B cspB [Mycobacterium tuberculosis C]
 gi|289555348|ref|ZP_06444558.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 605]
 gi|289744597|ref|ZP_06503975.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987]
 gi|298524364|ref|ZP_07011773.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|308397434|ref|ZP_07492504.2| putative cold-shock DNA-binding domain protein [Mycobacterium
          tuberculosis SUMu012]
 gi|124600238|gb|EAY59248.1| cold shock-like protein B cspB [Mycobacterium tuberculosis C]
 gi|148720606|gb|ABR05231.1| cold shock protein B cspB [Mycobacterium tuberculosis F11]
 gi|253321610|gb|ACT26213.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 1435]
 gi|289439980|gb|EFD22473.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 605]
 gi|289685125|gb|EFD52613.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987]
 gi|298494158|gb|EFI29452.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|308366919|gb|EFP55770.1| putative cold-shock DNA-binding domain protein [Mycobacterium
          tuberculosis SUMu012]
 gi|323720694|gb|EGB29771.1| cold shock protein B cspB [Mycobacterium tuberculosis CDC1551A]
 gi|328459845|gb|AEB05268.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 4207]
          Length = 138

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+PDKG+GF++ E     G+DV++  SA+   G+  L  GQ V +    +  
Sbjct: 4  VPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIA-SGR 57

Query: 62 NGKYSAENLKLVPK 75
           G   A +L+L+  
Sbjct: 58 RGPQ-ALSLRLIEP 70


>gi|194211706|ref|XP_001495854.2| PREDICTED: similar to Y-box protein ZONAB-B [Equus caballus]
          Length = 332

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 55  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 111

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 112 -KGAEAANV 119


>gi|311897807|dbj|BAJ30215.1| putative cold shock protein [Kitasatospora setae KM-6054]
          Length = 127

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGF++ +     G +VF+H  A+  AG+  L  GQ V +       
Sbjct: 1  MPTGQVKWFNETKGYGFLSRD----DGGEVFVHTKAL-PAGVTTLRPGQRVEFGVAAGHR 55

Query: 62 NGKYSAENLKLV 73
               A +++L+
Sbjct: 56 G--DQAMSVQLL 65


>gi|145222299|ref|YP_001132977.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          gilvum PYR-GCK]
 gi|315442733|ref|YP_004075612.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
 gi|145214785|gb|ABP44189.1| cold-shock DNA-binding protein family [Mycobacterium gilvum
          PYR-GCK]
 gi|315261036|gb|ADT97777.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
          Length = 136

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF++ E     G+DV++  SA+  AG+  L  GQ V +       
Sbjct: 1  MPTGRVKWYDAEKGFGFLSQE----EGEDVYVRSSAL-PAGVEGLKAGQRVEFGVAAGRR 55

Query: 62 NGKYSAENLKLVPK 75
               A  +KL+  
Sbjct: 56 G--PQALQVKLIDP 67


>gi|256397197|ref|YP_003118761.1| cold-shock DNA-binding domain-containing protein [Catenulispora
          acidiphila DSM 44928]
 gi|256363423|gb|ACU76920.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 131

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G IKWY+ +KG+GFIT +     G DVF+H SA+  AG   L  GQ V +       
Sbjct: 1  MPTGKIKWYDTEKGFGFITRD----DGPDVFMHSSAL-PAGTAELKSGQRVEFGVAAGKR 55

Query: 62 NGKYSAENLKLVP 74
              +A  +KL+ 
Sbjct: 56 G--DTAIGVKLLE 66


>gi|226308122|ref|YP_002768082.1| cold shock protein [Rhodococcus erythropolis PR4]
 gi|226187239|dbj|BAH35343.1| probable cold shock protein [Rhodococcus erythropolis PR4]
          Length = 137

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF++ E     G+DV++  SA+   G+  L  GQ V +       
Sbjct: 1  MPTGKVKWYDVEKGFGFLSQE----EGEDVYVRASAL-PEGVEGLKAGQRVEFGMAAGRR 55

Query: 62 NGKYSAENLKLVPKS 76
               A +LK++  +
Sbjct: 56 G--PQALSLKVLEPA 68


>gi|254443950|ref|ZP_05057426.1| 'Cold-shock' DNA-binding domain, putative [Verrucomicrobiae
          bacterium DG1235]
 gi|198258258|gb|EDY82566.1| 'Cold-shock' DNA-binding domain, putative [Verrucomicrobiae
          bacterium DG1235]
          Length = 64

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 7/71 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G+IKW++ +KGYGFI     +E GDD+F+H S   + G   L EG  V ++  +   
Sbjct: 1  MPKGTIKWFDQEKGYGFIQQ---SEGGDDLFVHHS--ETDGYA-LNEGDSVEFEIGEG-R 53

Query: 62 NGKYSAENLKL 72
           G  + +  K+
Sbjct: 54 KGPCATKVQKV 64


>gi|2073109|dbj|BAA19849.1| Y box protein 1 [Carassius auratus]
          Length = 311

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 42  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 98

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 99  -KGAEAANV 106


>gi|323452553|gb|EGB08427.1| hypothetical protein AURANDRAFT_16921 [Aureococcus
          anophagefferens]
          Length = 70

 Score = 75.4 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +N  KGYGFITP+     G DVF+H++ + + G  +L EG+ V ++  + D NG+  A +
Sbjct: 1  FNTVKGYGFITPD---NGGGDVFVHQTQIYARGFRSLAEGENVEFEI-EMDQNGRERAVS 56

Query: 70 LK 71
          + 
Sbjct: 57 VT 58


>gi|167966659|ref|ZP_02548936.1| cold shock protein B cspB [Mycobacterium tuberculosis H37Ra]
          Length = 75

 Score = 75.4 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+PDKG+GF++ E     G+DV++  SA+   G+  LT GQ V +    +  
Sbjct: 1  MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALTAGQRVEFGIA-SGR 54

Query: 62 NGKYSAENLKLVPK 75
           G + A +L+L+  
Sbjct: 55 RGPH-ALSLRLIEP 67


>gi|181484|gb|AAA35749.1| DNA-binding protein A [Homo sapiens]
          Length = 412

 Score = 75.4 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 163 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 219

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 220 -KGAEAANV 227


>gi|126662941|ref|ZP_01733939.1| cold shock protein [Flavobacteria bacterium BAL38]
 gi|126624599|gb|EAZ95289.1| cold shock protein [Flavobacteria bacterium BAL38]
          Length = 66

 Score = 75.4 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KGYGFIT +   E+G D+F+H S +      +L EG  V+Y+  +   
Sbjct: 1  MRTGKVKFFNESKGYGFITDD---ETGKDIFVHASGMRVE---SLNEGDAVSYE-EEEGR 53

Query: 62 NGKYSAENLKL 72
           GK +A+ + +
Sbjct: 54 KGKVAAQVVVI 64


>gi|289828079|ref|ZP_06546191.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-3139]
          Length = 45

 Score = 75.4 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 3/44 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47
          +G++KW+N  KG+GFITPE   +   DVF+H SA+ + G   L 
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLA 45


>gi|281352187|gb|EFB27771.1| hypothetical protein PANDA_013847 [Ailuropoda melanoleuca]
          Length = 163

 Score = 75.4 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 49  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 105

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 106 -KGAEAANV 113


>gi|301513705|ref|ZP_07238942.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB058]
 gi|301598130|ref|ZP_07243138.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB059]
          Length = 61

 Score = 75.4 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +N  KG+GFI     T+ G DVF H S + + G   L EGQ V +   Q        A N
Sbjct: 1  FNETKGFGFIQ----TDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQGKKG--PQASN 54

Query: 70 LKLV 73
          + +V
Sbjct: 55 ITIV 58


>gi|14602477|gb|AAH09744.1| CSDA protein [Homo sapiens]
          Length = 303

 Score = 75.4 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L +L +G+ V +D V+ +
Sbjct: 93  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSLGDGETVEFDVVEGE 149

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 150 -KGAEAANV 157


>gi|169627971|ref|YP_001701620.1| cold shock-like protein B CspB [Mycobacterium abscessus ATCC
          19977]
 gi|169239938|emb|CAM60966.1| Probable cold shock-like protein B CspB [Mycobacterium abscessus]
          Length = 137

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF++ E     G+DV++  SA+  AG+  L  GQ V +       
Sbjct: 1  MPTGKVKWYDAEKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQKVEFGMAAGRR 55

Query: 62 NGKYSAENLKLV--PKSSN 78
               A +LKL+  P S  
Sbjct: 56 G--PQALSLKLIDAPPSVQ 72


>gi|291405168|ref|XP_002719041.1| PREDICTED: Y box binding protein 2 [Oryctolagus cuniculus]
          Length = 275

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 13 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 69

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 70 -KGAEAANV 77


>gi|56800108|emb|CAI35156.1| Y box protein 2 [Mus musculus]
          Length = 282

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 20 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 76

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 77 -KGAEAANV 84


>gi|149610695|ref|XP_001517390.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 223

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 62  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 119 -KGAEAANV 126


>gi|74007889|ref|XP_531701.2| PREDICTED: similar to nuclease sensitive element binding protein 1
           [Canis familiaris]
          Length = 399

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 136 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNHPRKYLRSVGDGETVEFDVVEGE 192

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 193 -KGAEAANV 200


>gi|311743491|ref|ZP_07717297.1| cold-shock domain family protein [Aeromicrobium marinum DSM
          15272]
 gi|311312621|gb|EFQ82532.1| cold-shock domain family protein [Aeromicrobium marinum DSM
          15272]
          Length = 131

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  KG+GF+    S++ G DV+LH  A+   G+  +  G  V +   Q   
Sbjct: 1  MPTGKVKWFDAGKGFGFL----SSDEGPDVYLHADAL-PEGMDTIKPGTRVEFGIAQGRR 55

Query: 62 NGKYSAENLKLVPKSSN 78
               A  ++L   +++
Sbjct: 56 G--DQALQVRLAEPATS 70


>gi|254282751|ref|ZP_04957719.1| 'Cold-shock' DNA-binding domain protein [gamma proteobacterium
           NOR51-B]
 gi|219678954|gb|EED35303.1| 'Cold-shock' DNA-binding domain protein [gamma proteobacterium
           NOR51-B]
          Length = 123

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +GSIKW+N  KG+GFIT +     G++VF+H   V       +  GQ V Y   + +   
Sbjct: 60  KGSIKWFNATKGFGFITGD----DGNEVFVHFRNVEQLSKREIKPGQRVAYRVTETERG- 114

Query: 64  KYSAENLKLV 73
              AE++  +
Sbjct: 115 -PQAEDVSPL 123


>gi|118575691|ref|YP_875434.1| cold-shock protein [Cenarchaeum symbiosum A]
 gi|118194212|gb|ABK77130.1| cold-shock protein [Cenarchaeum symbiosum A]
          Length = 63

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 10/70 (14%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  +G+GFI  E     G D+F+H++ +       L +G  V ++  +   
Sbjct: 1  MEQGTVKWFNRTRGFGFIERET----GADLFVHKTNIDGN----LRDGDKVEFEVGEGPK 52

Query: 62 NGKYSAENLK 71
              SA N+K
Sbjct: 53 G--PSAVNVK 60


>gi|194131842|gb|ACF33226.1| Y-box protein Lyb1 [Lethenteron japonicum]
          Length = 331

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D V+ +
Sbjct: 27 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVEGE 83

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 84 -KGAEAANV 91


>gi|301166258|emb|CBW25833.1| cold shock-like protein [Bacteriovorax marinus SJ]
          Length = 64

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K+++ +KG+GFITPE     G D+F+H + + S     L EG  V Y+  +   
Sbjct: 1  METGKVKFFDQEKGFGFITPE---NGGKDIFVHITGIQSG---PLNEGDTVEYEVGEGLK 54

Query: 62 NGKYSAENLK 71
               A N+ 
Sbjct: 55 G--PCAVNVS 62


>gi|311746405|ref|ZP_07720190.1| putative cold shock protein [Algoriphagus sp. PR1]
 gi|126575291|gb|EAZ79623.1| putative cold shock protein [Algoriphagus sp. PR1]
          Length = 64

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 9/73 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K++N  KG+GFITP+ S E   DVF+H+S +       + E   V+Y+ VQ   
Sbjct: 1  MNEGTVKFFNTTKGFGFITPDDSDE---DVFVHQSGLVHD----IRENDKVSYELVQGKK 53

Query: 62 NGKYSAENLKLVP 74
              +A N+K++ 
Sbjct: 54 G--VNAVNVKVIK 64


>gi|147901492|ref|NP_001081167.1| Y-box-binding protein 2-B [Xenopus laevis]
 gi|214642|gb|AAA49924.1| p54 [Xenopus laevis]
          Length = 324

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      +S +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 43  QGTVKWFNVRNGYGFI---NRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 100 E-KGAEAANV 108


>gi|213691595|ref|YP_002322181.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|312132324|ref|YP_003999663.1| cspc2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|213523056|gb|ACJ51803.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|311773640|gb|ADQ03128.1| CspC2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|320457683|dbj|BAJ68304.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
          15697]
          Length = 129

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++W++  KGYGFIT    +E G DVFL   A+   G   L +G  V Y  V +  
Sbjct: 1  MPTGRVRWFDAAKGYGFIT----SEEGKDVFLPAQAL-PTGATTLRKGAKVEYSVV-DGR 54

Query: 62 NGKYSAENLKLVPKS 76
           G   A +++L+  +
Sbjct: 55 RGPQ-AMDVRLIASA 68


>gi|74007477|ref|XP_549034.2| PREDICTED: similar to cold shock domain protein A [Canis
          familiaris]
          Length = 315

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          RGS+KW+N   GYGFI+   + E   DVF+H++A+          ++ +G+ V +D VQ 
Sbjct: 26 RGSVKWFNVKNGYGFISRHDTQE---DVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQG 82

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 83 E-RGTEAANV 91


>gi|14250672|gb|AAH08801.1| Cold shock domain protein A [Homo sapiens]
 gi|18314511|gb|AAH21926.1| Cold shock domain protein A [Homo sapiens]
 gi|123984533|gb|ABM83612.1| cold shock domain protein A [synthetic construct]
 gi|123998509|gb|ABM86856.1| cold shock domain protein A [synthetic construct]
 gi|208966070|dbj|BAG73049.1| cold shock domain protein A [synthetic construct]
          Length = 372

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 93  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 150 -KGAEAANV 157


>gi|71679965|gb|AAI00455.1| Ybx2 protein [Mus musculus]
          Length = 171

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 97  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 152


>gi|13488214|ref|NP_085668.1| cold-shock protein [Mesorhizobium loti MAFF303099]
 gi|14027917|dbj|BAB54509.1| cold-shock protein [Mesorhizobium loti MAFF303099]
          Length = 97

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G++KWY P+KG+GFI P+       DVF+H S +  +GL  L EGQ V +        G
Sbjct: 33 GTVKWYKPEKGFGFIAPD---NGEKDVFVHASTLTRSGLSALVEGQKV-FVACGQGKKG 87


>gi|291303304|ref|YP_003514582.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia
          nassauensis DSM 44728]
 gi|290572524|gb|ADD45489.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis
          DSM 44728]
          Length = 144

 Score = 75.0 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWYN +KG+GF++ +   + G+DVFLHR A+   G+  L  GQ + Y  V    
Sbjct: 12 VPTGRVKWYNAEKGFGFVSRD---DGGNDVFLHRDAL-PEGVTELKAGQKLEYGIVDTRR 67

Query: 62 NGKYSAENLKLV 73
               A ++ LV
Sbjct: 68 G--VQAMSVTLV 77


>gi|118468185|ref|YP_889929.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
          smegmatis str. MC2 155]
 gi|118169472|gb|ABK70368.1| 'Cold-shock' DNA-binding domain protein [Mycobacterium smegmatis
          str. MC2 155]
          Length = 149

 Score = 75.0 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ +KG+GF++ E     G+DV++  SA+  AG+  L  GQ V +       
Sbjct: 14 VPTGKVKWYDAEKGFGFLSQE----DGEDVYVRSSAL-PAGVEALKSGQRVEFGVAAGRR 68

Query: 62 NGKYSAENLKLVPK 75
               A +LKL+  
Sbjct: 69 G--PQALSLKLIDP 80


>gi|332838567|ref|XP_520744.3| PREDICTED: DNA-binding protein A isoform 2 [Pan troglodytes]
          Length = 374

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 95  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 152 -KGAEAANV 159


>gi|148680545|gb|EDL12492.1| Y box protein 2 [Mus musculus]
          Length = 268

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 6  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 62

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 63 -KGAEAANV 70


>gi|224586882|ref|NP_003642.3| DNA-binding protein A isoform a [Homo sapiens]
 gi|97536050|sp|P16989|DBPA_HUMAN RecName: Full=DNA-binding protein A; AltName: Full=Cold shock
           domain-containing protein A; AltName: Full=Single-strand
           DNA-binding protein NF-GMB
 gi|1167838|emb|CAA64631.1| DNA-binding protein [Homo sapiens]
 gi|15026972|emb|CAA51261.1| cold shock domain protein A [Homo sapiens]
 gi|15990406|gb|AAH15564.1| Cold shock domain protein A [Homo sapiens]
 gi|119616607|gb|EAW96201.1| cold shock domain protein A, isoform CRA_a [Homo sapiens]
 gi|119616608|gb|EAW96202.1| cold shock domain protein A, isoform CRA_a [Homo sapiens]
 gi|189054724|dbj|BAG37363.1| unnamed protein product [Homo sapiens]
          Length = 372

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 93  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 150 -KGAEAANV 157


>gi|331014236|gb|EGH94292.1| cold shock protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 41

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 4/45 (8%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          KW+N +KG+GFITP    +SGDD+F+H  A+ S G  +L EGQ V
Sbjct: 1  KWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQV 41


>gi|297469975|ref|XP_602127.4| PREDICTED: cold shock domain protein A short-like [Bos taurus]
 gi|297493214|ref|XP_002700207.1| PREDICTED: cold shock domain protein A short-like [Bos taurus]
 gi|296470657|gb|DAA12772.1| cold shock domain protein A short-like [Bos taurus]
          Length = 370

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLF-NLTEGQLVTYDYVQND 60
           G++ W+   KGYGFI    + E   DVF+H +A+          ++ +G+ V +D VQ +
Sbjct: 70  GTVVWFKDKKGYGFIRRHDTQE---DVFVHHTAITGETPCKYRGSVDDGETVEFDVVQGE 126

Query: 61  ANGKYSAEN 69
             G  +A+ 
Sbjct: 127 -RGTEAAKV 134


>gi|194333568|ref|YP_002015428.1| cold-shock DNA-binding domain-containing protein
          [Prosthecochloris aestuarii DSM 271]
 gi|194311386|gb|ACF45781.1| cold-shock DNA-binding domain protein [Prosthecochloris aestuarii
          DSM 271]
          Length = 95

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQN 59
          M  +  +KW++  KGYGFI    + E G+D+F+H SA+ S      L +   V ++  Q 
Sbjct: 1  MPIKSKVKWFDGKKGYGFI---LNPEGGEDIFVHFSAIVSDLTFKVLNQDADVEFELDQT 57

Query: 60 DANGKYSAENLK 71
                 A N++
Sbjct: 58 QKG--LQARNVR 67


>gi|23464629|ref|NP_695232.1| cold shock protein [Bifidobacterium longum NCC2705]
 gi|189438864|ref|YP_001953945.1| cold shock protein [Bifidobacterium longum DJO10A]
 gi|213691589|ref|YP_002322175.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|227546726|ref|ZP_03976775.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
          55813]
 gi|239620702|ref|ZP_04663733.1| CspA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296454610|ref|YP_003661753.1| putative cold-shock DNA-binding domain-containing protein
          [Bifidobacterium longum subsp. longum JDM301]
 gi|317481715|ref|ZP_07940747.1| cold-shock' DNA-binding domain-containing protein
          [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689677|ref|YP_004209411.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F]
 gi|322691638|ref|YP_004221208.1| cold shock protein [Bifidobacterium longum subsp. longum JCM
          1217]
 gi|23325186|gb|AAN23868.1| cold shock protein [Bifidobacterium longum NCC2705]
 gi|189427299|gb|ACD97447.1| Cold shock protein [Bifidobacterium longum DJO10A]
 gi|213523050|gb|ACJ51797.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|227212688|gb|EEI80569.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
          55813]
 gi|239516278|gb|EEQ56145.1| CspA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296184041|gb|ADH00923.1| putative cold-shock DNA-binding domain protein [Bifidobacterium
          longum subsp. longum JDM301]
 gi|316916829|gb|EFV38219.1| cold-shock' DNA-binding domain-containing protein
          [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456494|dbj|BAJ67116.1| cold shock protein [Bifidobacterium longum subsp. longum JCM
          1217]
 gi|320457677|dbj|BAJ68298.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC
          15697]
 gi|320461013|dbj|BAJ71633.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F]
          Length = 79

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
          + +G++K++   KG+GFI P+   + G+DVF+H + +   G       L EG  V Y   
Sbjct: 1  MAQGTVKFFLAKKGFGFIQPD---DGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPA 57

Query: 58 QNDANGKYSAENLKLVPKSS 77
           +   G  + + +KL    +
Sbjct: 58 SSG-KGTQAKDVVKLSSGEA 76


>gi|190571462|ref|YP_001975820.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|213018865|ref|ZP_03334673.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
 gi|190357734|emb|CAQ55185.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|212995816|gb|EEB56456.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
          Length = 83

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 16/84 (19%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLT--------EGQL 51
          +  G+IKW+N +KGYGFI PEG    G+DVF+H S +  +G+    L         +G+ 
Sbjct: 1  MEFGNIKWFNVEKGYGFIKPEGK---GEDVFVHVSTLERSGIRPDELRGEDKKRGMKGER 57

Query: 52 VTYDY-VQNDANG--KYSAENLKL 72
          V+Y+   +   NG  K SA NL+L
Sbjct: 58 VSYELKEERGRNGEDKKSAINLRL 81


>gi|45382293|ref|NP_990737.1| Rous sarcoma virus transcription enhancer factor II [Gallus gallus]
 gi|727428|gb|AAA64706.1| Rous sarcoma virus transcription enhancer factor II [Gallus gallus]
          Length = 298

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 90  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLASVGDGETVEFDVVEGE 146

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 147 -KGAEAANV 154


>gi|255535684|ref|YP_003096055.1| Cold shock protein CspA [Flavobacteriaceae bacterium 3519-10]
 gi|255341880|gb|ACU07993.1| Cold shock protein CspA [Flavobacteriaceae bacterium 3519-10]
          Length = 63

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFITP      G+D+F+H S V +     + E   VTY+  Q + 
Sbjct: 1  MQEGTVKFFNETKGFGFITP---LNGGEDIFVHTSGVNTK----IRENDKVTYEVQQGNK 53

Query: 62 NGKYSAENLKLV 73
              +A N+KLV
Sbjct: 54 G--LNAVNVKLV 63


>gi|288558834|sp|P45441|YBX2B_XENLA RecName: Full=Y-box-binding protein 2-B; AltName: Full=Cytoplasmic
           RNA-binding protein p54; AltName: Full=Frog Y-box
           protein 2-B; Short=FRGY2b; AltName: Full=Messenger
           ribonucleoprotein particle 3; Short=mRNP3
 gi|161611735|gb|AAI55914.1| Csda-A protein [Xenopus laevis]
          Length = 324

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      +S +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 43  QGTVKWFNVRNGYGFI---NRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 100 E-KGAEAANV 108


>gi|194207608|ref|XP_001916443.1| PREDICTED: similar to rCG50488 [Equus caballus]
          Length = 364

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 101 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 157

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 158 -KGAEAANV 165


>gi|197294834|ref|YP_001799375.1| cold shock protein [Candidatus Phytoplasma australiense]
 gi|171854161|emb|CAM12154.1| Cold shock protein, similar to Csp of Bacteriophage bIL312
          [Candidatus Phytoplasma australiense]
          Length = 77

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQN 59
            +G+ +W++ DKGYGFI     +  G DVF+H S++ +   G   L +   V +   ++
Sbjct: 5  RQQGTCRWFSGDKGYGFIV----SAEGKDVFVHYSSIQTEVQGRRTLNKDDKVEFSIKEH 60

Query: 60 DANGKYSAENLKLV 73
          D   +  A ++ ++
Sbjct: 61 DN--RIQAVDVVVI 72


>gi|297691167|ref|XP_002822965.1| PREDICTED: DNA-binding protein A-like [Pongo abelii]
          Length = 371

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 92  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 148

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 149 -KGAEAANV 156


>gi|950340|gb|AAA79243.1| DNA-binding protein A [Homo sapiens]
          Length = 342

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 93  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 150 -KGAEAANV 157


>gi|189299|gb|AAA59949.1| DNA-binding protein [Homo sapiens]
          Length = 320

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 58  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 115 -KGAEAANV 122


>gi|331699393|ref|YP_004335632.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326954082|gb|AEA27779.1| cold-shock DNA-binding domain protein [Pseudonocardia
          dioxanivorans CB1190]
          Length = 156

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ DKG+GF+  +     G+DV++ +SA+   G+ +L  GQ V +   +   
Sbjct: 29 VPTGRVKWYDADKGFGFLAQD----GGEDVYVRKSAL-PTGVESLKSGQRVEFGMAEGRR 83

Query: 62 NGKYSAENLKLV 73
               A  ++LV
Sbjct: 84 G--PQALQVRLV 93


>gi|56754985|gb|AAW25675.1| SJCHGC00971 protein [Schistosoma japonicum]
          Length = 250

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|116334042|ref|YP_795569.1| cold shock protein [Lactobacillus brevis ATCC 367]
 gi|116099389|gb|ABJ64538.1| cold-shock DNA-binding protein family [Lactobacillus brevis ATCC
          367]
          Length = 74

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K YN  +G+GFIT         DVF++ + +   G   L  GQ V +  VQ   
Sbjct: 1  MLTGKVKSYNEQRGFGFITTPADG----DVFVYYTGIIGEGFRKLEAGQTVQFVIVQG-M 55

Query: 62 NGKYSAENLKLVPKSSN 78
           G  +A+   +V  S+ 
Sbjct: 56 RGPQAAKVTPVVTASTE 72


>gi|1083796|pir||S48055 RYB-a protein - rat
          Length = 291

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 84  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGE 140

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 141 -KGAEAANV 148


>gi|289641675|ref|ZP_06473835.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
 gi|289508544|gb|EFD29483.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
          Length = 131

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ DKG+GF++ +     G DVF+H++A+   G+  L  G  V +    +  
Sbjct: 1  MPTGRVKWFDVDKGFGFLSRD----DGGDVFVHKAAL-PPGVDRLKPGDRVEFGIATSRR 55

Query: 62 NGKYSAENLKLVPKS 76
            +  +  L   P S
Sbjct: 56 GDQALSVRLLAAPPS 70


>gi|327284528|ref|XP_003226989.1| PREDICTED: protein lin-28 homolog B-like [Anolis carolinensis]
          Length = 320

 Score = 74.6 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 101 TGHCKWFNVRMGFGFISMLHREGSPLDSPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 160

Query: 60  DAN 62
              
Sbjct: 161 SKG 163


>gi|300779123|ref|ZP_07088981.1| CspA family cold shock transcriptional regulator
          [Chryseobacterium gleum ATCC 35910]
 gi|300504633|gb|EFK35773.1| CspA family cold shock transcriptional regulator
          [Chryseobacterium gleum ATCC 35910]
          Length = 64

 Score = 74.6 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 8/71 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFI+P   T+   D+F+H S + S    ++ E   V +D  ++D 
Sbjct: 1  MQQGTVKFFNEAKGFGFISP---TDGSKDIFVHSSGLDS---RSIRENDKVVFDVQKSDK 54

Query: 62 NGKYSAENLKL 72
              +A N+KL
Sbjct: 55 G--LNAVNVKL 63


>gi|311256155|ref|XP_003126523.1| PREDICTED: DNA-binding protein A-like [Sus scrofa]
          Length = 380

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 102 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 158

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 159 -KGAEAANV 166


>gi|326677327|ref|XP_003200812.1| PREDICTED: protein lin-28 homolog B-like, partial [Danio rerio]
          Length = 211

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GFI+   S     +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 114 GYCKWFNVRMGFGFISMTSSEGKPVDPPLDVFVHQSKLVMEGFRSLREGEQVEFTFKRSS 173

Query: 61  AN 62
             
Sbjct: 174 KG 175


>gi|111021931|ref|YP_704903.1| cold shock protein [Rhodococcus jostii RHA1]
 gi|110821461|gb|ABG96745.1| probable cold shock protein [Rhodococcus jostii RHA1]
          Length = 136

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF++ E     G+DV++  SA+   G+  L  GQ V +       
Sbjct: 1  MPTGKVKWYDVEKGFGFLSQE----EGEDVYVRSSAL-PEGVEGLKAGQRVEFGMAAGRR 55

Query: 62 NGKYSAENLKLVPKS 76
               A +LK++  +
Sbjct: 56 G--PQALSLKVLDPA 68


>gi|116326594|ref|YP_796515.1| cold-shock DNA-binding protein family protein [Lactococcus lactis
          subsp. cremoris SK11]
 gi|125624080|ref|YP_001032563.1| cold shock protein cspC [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|190571793|ref|YP_001966472.1| CSPC [Lactococcus lactis]
 gi|281492699|ref|YP_003354679.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|76574949|gb|ABA47418.1| cold shock protein C [Lactococcus lactis]
 gi|108736192|gb|ABG00321.1| CSPC [Lactococcus lactis]
 gi|116108962|gb|ABJ74084.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp.
          cremoris SK11]
 gi|124492888|emb|CAL97847.1| cold shock protein cspC [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|281376356|gb|ADA65846.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|300070849|gb|ADJ60249.1| cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000]
 gi|326406196|gb|ADZ63267.1| cold shock protein CspC [Lactococcus lactis subsp. lactis CV56]
 gi|326407855|gb|ADZ64926.1| cold shock protein CspC [Lactococcus lactis subsp. lactis CV56]
          Length = 66

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G+I W+N DKGYGFI      +   DVF +  ++         EGQ VT+D  +  +
Sbjct: 1  MNKGTINWFNADKGYGFI----MADDMQDVFAYLLSIQGNDFKKYDEGQKVTFDI-KMTS 55

Query: 62 NGKYSAEN 69
           G+Y++  
Sbjct: 56 RGRYASNV 63


>gi|84497535|ref|ZP_00996357.1| Putative transcriptional regulator cold shock protein [Janibacter
           sp. HTCC2649]
 gi|84382423|gb|EAP98305.1| Putative transcriptional regulator cold shock protein [Janibacter
           sp. HTCC2649]
          Length = 314

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++ WY+  KG+GFIT +     G DVF+H   +A  GL  L EG  VTYD V ++    
Sbjct: 158 GTVSWYDGGKGFGFITSDS---GGPDVFVHVRELA-DGLTELGEGDRVTYDVVVSEKG-- 211

Query: 65  YSAENLKLVPKSS 77
             A +++L   S+
Sbjct: 212 PQARDVRLARGSA 224



 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
          +  G+++W++ D+G+GFI      +  +D+++H S + S   +  L EGQ+V ++  + D
Sbjct: 1  MTEGTVRWFDTDRGFGFIA---LGQDAEDLYVHASEIVSADAMKVLREGQVVEFEVGEGD 57

Query: 61 ANGKYSAENLKLVPKSS 77
                A  +++    +
Sbjct: 58 RG--PQARRVRVTADQA 72



 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++ WY P KGYGFITP+G    G ++F+H SA+   G+  L+E Q V +  V  +   +
Sbjct: 81  GTVSWYEPSKGYGFITPDG---GGTEIFVHSSAIVGGGV--LSEAQRVAFLVVDGERGPQ 135



 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G ++ Y+ ++G+GFI P+     G D+F+H S +  A    L  G  V Y   Q+D   
Sbjct: 252 EGVVERYDAERGFGFIAPDA---GGADLFVHVSVLRGA--EALEPGDRVRYQVRQSDRGP 306

Query: 64  K 64
           +
Sbjct: 307 Q 307


>gi|260460198|ref|ZP_05808450.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033843|gb|EEW35102.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 199

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G++KWY+P KG+GFI P    +   D F+H +A+  +G+  L EGQ+V  +  Q    
Sbjct: 135 EGTVKWYDPQKGFGFIAP---NKGEKDAFVHATALTRSGISELLEGQMVLVECGQGKKG 190



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          + W+N  KG+GF+        G + +L    + ++G  ++ EG  +     +    
Sbjct: 47 VMWFNAGKGFGFV----KLLDGTEAYLPVRVLEASGTRDVCEGTRLKVTIEERPRG 98


>gi|505133|dbj|BAA05907.1| RYB-a [Rattus norvegicus]
          Length = 291

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 84  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGE 140

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 141 -KGAEAANV 148


>gi|261344285|ref|ZP_05971929.1| cold-shock DNA-binding domain protein [Providencia rustigianii
          DSM 4541]
 gi|282567888|gb|EFB73423.1| cold-shock DNA-binding domain protein [Providencia rustigianii
          DSM 4541]
          Length = 71

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H G +KW++  +GYGFI+P      GDD+F+   ++A+  + +L+EGQ V +   +N  
Sbjct: 5  LHMGRVKWFDAKEGYGFISP---CNGGDDIFVTTKSLANKKIKSLSEGQNVEFSVTRNSD 61

Query: 62 N 62
           
Sbjct: 62 G 62


>gi|148645030|gb|ABR01045.1| Csp [uncultured Geobacter sp.]
          Length = 56

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +N  KG+GF+  E     G+DVF H SA+A  G  +L EG  VT++  +    G  +A  
Sbjct: 1  FNDGKGFGFLEQE----GGEDVFCHFSAIAGEGFKSLAEGDRVTFEVTKG-PKGLQAANV 55


>gi|146312143|ref|YP_001177217.1| cold-shock DNA-binding protein family protein [Enterobacter sp.
          638]
 gi|145319019|gb|ABP61166.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
          Length = 72

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KWY  DKG+GFI+P    + G D+ +H S +       L EGQ V Y     +   
Sbjct: 6  RGLVKWYKEDKGFGFISP---LDGGKDISVHVSNLKGDDCQTLFEGQKVEYTIYNGNKG- 61

Query: 64 KYSAENL 70
            +A N+
Sbjct: 62 -PAASNV 67


>gi|3821913|gb|AAC69698.1| major cold shock protein [Lactococcus lactis subsp. lactis]
 gi|3821917|gb|AAC69700.1| major cold shock protein [Lactococcus lactis subsp. cremoris]
          Length = 50

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          KG+GFIT    +E G DVF H S + ++G   L EGQ VT+D V+    G  +A 
Sbjct: 1  KGFGFIT----SEDGQDVFAHFSQIQTSGFKTLDEGQKVTFD-VEAGQRGPQAAN 50


>gi|1402755|gb|AAC80244.1| major cold-shock protein [Lactobacillus casei]
          Length = 45

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          DKGYGFIT     E G DVF+H SA+   G  +L EGQ V+YD  Q+D 
Sbjct: 1  DKGYGFIT----GEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSDR 45


>gi|301789934|ref|XP_002930376.1| PREDICTED: DNA-binding protein A-like [Ailuropoda melanoleuca]
          Length = 335

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 58  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 115 -KGAEAANV 122


>gi|297824943|ref|XP_002880354.1| hypothetical protein ARALYDRAFT_480954 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297326193|gb|EFH56613.1| hypothetical protein ARALYDRAFT_480954 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 198

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 3/46 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47
            +GS+KW++  KG+GFITP    + GDD+F+H+S++ S G  +L 
Sbjct: 13 RRKGSVKWFDTQKGFGFITP---NDGGDDLFVHQSSIRSEGFRSLA 55


>gi|145219984|ref|YP_001130693.1| cold-shock DNA-binding protein family protein [Prosthecochloris
          vibrioformis DSM 265]
 gi|145206148|gb|ABP37191.1| cold-shock DNA-binding protein family [Chlorobium phaeovibrioides
          DSM 265]
          Length = 85

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          + +  +KW++  KGYGFI      E G+D+F+H SA+ S      L +   V +++    
Sbjct: 1  MAKSKVKWFDGKKGYGFI---LHPEGGEDIFVHFSAINSEQPFKVLNQDAEVEFEF-DTT 56

Query: 61 ANGKYSAENLKLVPKSSN 78
            G  +   L+L   S N
Sbjct: 57 QKGLQAKNVLELTESSQN 74


>gi|171743331|ref|ZP_02919138.1| hypothetical protein BIFDEN_02462 [Bifidobacterium dentium ATCC
          27678]
 gi|306823276|ref|ZP_07456652.1| cold-shock domain family protein [Bifidobacterium dentium ATCC
          27679]
 gi|309801917|ref|ZP_07696032.1| cold-shock DNA-binding domain protein [Bifidobacterium dentium
          JCVIHMP022]
 gi|171278945|gb|EDT46606.1| hypothetical protein BIFDEN_02462 [Bifidobacterium dentium ATCC
          27678]
 gi|304553908|gb|EFM41819.1| cold-shock domain family protein [Bifidobacterium dentium ATCC
          27679]
 gi|308221473|gb|EFO77770.1| cold-shock DNA-binding domain protein [Bifidobacterium dentium
          JCVIHMP022]
          Length = 129

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++W++ +KGYGFI      E G DVFL   A+   G+  L +G  V Y  ++   
Sbjct: 1  MPSGRVRWFDTNKGYGFIQ----NEQGADVFLPAVAL-PEGVKTLRKGAKVEYSVIEGRR 55

Query: 62 NGKYSAENLKLVPKS 76
               A N+ LV  +
Sbjct: 56 G--PQAMNVTLVASA 68


>gi|227494398|ref|ZP_03924714.1| cold shock protein [Actinomyces coleocanis DSM 15436]
 gi|226832132|gb|EEH64515.1| cold shock protein [Actinomyces coleocanis DSM 15436]
          Length = 125

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K+++ DKG+GFI     ++ G+ VFLH SA+    L +   G  V +  + +  
Sbjct: 1  MPTGKVKFFDADKGFGFIE----SDDGESVFLHASAL-PENLKHPKNGARVEFSMI-DGR 54

Query: 62 NGKYSAENLKLVPKS 76
           G   A ++ L+P++
Sbjct: 55 RGPQ-AIHVNLLPEA 68


>gi|161612267|gb|AAI55915.1| FRGY2 protein [Xenopus laevis]
          Length = 342

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 43  QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 100 E-KGAEAANV 108


>gi|147902111|ref|NP_001081274.1| Y-box-binding protein 2-A [Xenopus laevis]
 gi|288558836|sp|P21574|YBX2A_XENLA RecName: Full=Y-box-binding protein 2-A; AltName: Full=Cytoplasmic
           RNA-binding protein p56; AltName: Full=Frog Y-box
           protein 2; Short=FRG Y2; AltName: Full=Frog Y-box
           protein 2-A; Short=FRGY2a; AltName: Full=Messenger
           ribonucleoprotein particle 4; Short=mRNP4
 gi|214157|gb|AAA49716.1| DNA-binding protein [Xenopus laevis]
 gi|213623410|gb|AAI69706.1| Sequence -specific binding protein [Xenopus laevis]
 gi|213625048|gb|AAI69704.1| Sequence -specific binding protein [Xenopus laevis]
          Length = 336

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 43  QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 100 E-KGAEAANV 108


>gi|181486|gb|AAA35750.1| DNA-binding protein B [Homo sapiens]
          Length = 364

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 101 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 157

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 158 -KGAEAANV 165


>gi|281490767|ref|YP_003352747.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147]
 gi|281374536|gb|ADA64057.1| Cold-shock protein [Lactococcus lactis subsp. lactis KF147]
          Length = 66

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G+I W+N DKGYGFI  +       DVF +  ++         EGQ VT+D  +  +
Sbjct: 1  MNKGTINWFNADKGYGFIMADDR----QDVFAYLLSIQGNDFKKYDEGQKVTFDI-KMTS 55

Query: 62 NGKYSAEN 69
           G+Y++  
Sbjct: 56 RGRYASNV 63


>gi|296277238|ref|ZP_06859745.1| cold shock protein [Staphylococcus aureus subsp. aureus MR1]
          Length = 55

 Score = 73.8 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          +KG+GFI  E    +G DVF+H S +AS G   L EGQ VT++  +        A N++ 
Sbjct: 1  EKGFGFIEQE----NGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQRG--DQAVNVQT 54

Query: 73 V 73
          V
Sbjct: 55 V 55


>gi|3121921|sp|Q44078|CSPA_AERHY RecName: Full=Major cold-shock protein
 gi|1402731|gb|AAC80230.1| major cold-shock protein [Aeromonas hydrophila]
          Length = 46

 Score = 73.8 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFI+P   T+   DVF+H SA+ + G   L EGQ V +   Q   
Sbjct: 1  EKGFGFISP---TDGSKDVFVHFSAIQTPGFKTLDEGQRVEFTIEQGQK 46


>gi|8100512|gb|AAF72336.1|AF171062_1 Y-box protein ZONAB-B [Canis lupus familiaris]
          Length = 372

 Score = 73.8 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H +A+        L ++ +G+ V +D V+ +
Sbjct: 95  GTVKWFNVRNGYGFI---NRNDTKEDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 152 -KGAEAANV 159


>gi|323342405|ref|ZP_08082637.1| cold shock protein B [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463517|gb|EFY08711.1| cold shock protein B [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 65

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K +N +KG+GFIT     E G D+F H + +   G   + EG  V ++ V+++   
Sbjct: 2  KGKVKTFNKNKGFGFIT----AEDGQDIFFHYTHLIMEGFKTIEEGTEVEFELVESERG- 56

Query: 64 KYSAENL 70
             A N+
Sbjct: 57 -LQAHNI 62


>gi|254498195|ref|ZP_05110944.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
 gi|254352603|gb|EET11389.1| cold shock domain-contain protein [Legionella drancourtii LLAP12]
          Length = 73

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G +KW+  +KG+GFI  E     G D F+H S + + G   L +G  V++    +   
Sbjct: 7  KQGIVKWFQKEKGFGFIQCE-----GQDYFVHFSGIIAEGYKTLPDGAHVSFK-TMDGKK 60

Query: 63 GKYSAEN 69
          GK + E 
Sbjct: 61 GKQAHEV 67


>gi|3121924|sp|Q46051|CSPA_CITFR RecName: Full=Major cold shock protein
 gi|3121925|sp|Q46664|CSPA_ENTAE RecName: Full=Major cold shock protein
 gi|3121930|sp|Q53816|CSPA_SHIBO RecName: Full=Major cold shock protein
 gi|3121934|sp|Q56178|CSPA_SALVI RecName: Full=Major cold shock protein
 gi|1402743|gb|AAC80237.1| major cold-shock protein [Citrobacter freundii]
 gi|1402745|gb|AAC80236.1| major cold-shock protein [Citrobacter freundii]
 gi|1402747|gb|AAC80238.1| major cold-shock protein [Enterobacter aerogenes]
 gi|1402749|gb|AAC80239.1| major cold-shock protein [Escherichia coli]
 gi|1402773|gb|AAC80240.1| major cold-shock protein [Shigella boydii]
 gi|1402779|gb|AAC80241.1| major cold-shock protein [Shigella flexneri]
 gi|1402785|gb|AAC80252.1| major cold-shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium]
 gi|1402787|gb|AAC80253.1| major cold-shock protein [Salmonella enterica subsp. enterica
          serovar Virchow]
          Length = 46

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          DKG+GFITP+   +   DVF+H SA+ + G  +L EGQ V++       
Sbjct: 1  DKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAK 46


>gi|209965446|ref|YP_002298361.1| Cold shock-like protein CspG [Rhodospirillum centenum SW]
 gi|209958912|gb|ACI99548.1| Cold shock-like protein CspG [Rhodospirillum centenum SW]
          Length = 101

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++K+++ DKG+GF+TP+G    G DVF+H +A+  +G+  L   Q V           
Sbjct: 37  EGTVKFFSSDKGFGFVTPDG---GGKDVFVHVTALERSGVRTLMPEQRVRIQTSMGQKG- 92

Query: 64  KYSAENLKLV 73
              A  ++++
Sbjct: 93  -PQANRVEIL 101


>gi|197245601|gb|AAI68507.1| Ybx1 protein [Danio rerio]
          Length = 310

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 98  -KGAEAANV 105


>gi|163786330|ref|ZP_02180778.1| cold shock protein [Flavobacteriales bacterium ALC-1]
 gi|159878190|gb|EDP72246.1| cold shock protein [Flavobacteriales bacterium ALC-1]
          Length = 84

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFIT EGS     D F+H S +       + EG  V +D  +   
Sbjct: 22 MSTGTVKFFNDSKGFGFITEEGSD---KDHFVHISGLVDE----IKEGDNVEFDLTEGKK 74

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 75 G--LNAVNVKVI 84


>gi|153938873|ref|YP_001391027.1| cold shock protein [Clostridium botulinum F str. Langeland]
 gi|170756146|ref|YP_001781321.1| cold shock protein [Clostridium botulinum B1 str. Okra]
 gi|152934769|gb|ABS40267.1| cold shock protein [Clostridium botulinum F str. Langeland]
 gi|169121358|gb|ACA45194.1| cold shock protein [Clostridium botulinum B1 str. Okra]
 gi|295319083|gb|ADF99460.1| cold shock protein [Clostridium botulinum F str. 230613]
          Length = 69

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
          +H G++KW++ ++GYGFI       +G DV++H   +       +L EG+ V +D V+ +
Sbjct: 3  MHTGTVKWFDNERGYGFIA----GNNGKDVYVHYMQIKEKTHNKDLHEGEEVLFDIVEKE 58

Query: 61 ANGKYSAENLKLV 73
                A N++ +
Sbjct: 59 KG--PIAINVQKL 69


>gi|83594086|ref|YP_427838.1| cold-shock DNA-binding protein family protein [Rhodospirillum
          rubrum ATCC 11170]
 gi|83577000|gb|ABC23551.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
          11170]
          Length = 70

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
          +  G++KW+N  KG+GFI P+   + G D F+H SAV  +   +
Sbjct: 1  MTTGTVKWFNVQKGFGFIAPD---DGGSDAFVHISAVERSSDRS 41


>gi|291411891|ref|XP_002722201.1| PREDICTED: cold shock domain protein A [Oryctolagus cuniculus]
          Length = 376

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 98  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 154

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 155 -KGAEAANV 162


>gi|78186480|ref|YP_374523.1| cold-shock DNA-binding domain-containing protein [Chlorobium
          luteolum DSM 273]
 gi|78166382|gb|ABB23480.1| cold-shock DNA-binding protein family [Chlorobium luteolum DSM
          273]
          Length = 89

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          + R  +KW++  KGYGFI      E G+D+F+H SA+ S      L +   V ++     
Sbjct: 1  MARSKVKWFDGKKGYGFI---LHPEGGEDIFVHFSAIESDQPFKVLNQDADVDFEIDTTQ 57

Query: 61 ANGKYSAENLK 71
                A+N++
Sbjct: 58 KG--LQAKNVR 66


>gi|319948064|ref|ZP_08022237.1| CspB [Dietzia cinnamea P4]
 gi|319438269|gb|EFV93216.1| CspB [Dietzia cinnamea P4]
          Length = 133

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF++ E     G+DV++   A+  AG+  L   Q V +D V +  
Sbjct: 1  MPSGKVKWYDAEKGFGFLSQE----GGEDVYVRADAL-PAGVETLRPRQRVEFDMV-SGR 54

Query: 62 NGKYSAENL 70
           G  +   +
Sbjct: 55 RGPQALRVV 63


>gi|209966917|ref|YP_002299832.1| cold shock-like protein CspA [Rhodospirillum centenum SW]
 gi|209960383|gb|ACJ01020.1| cold shock-like protein CspA [Rhodospirillum centenum SW]
          Length = 199

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            GS+KW+  DKG+GF+T +   + G DVF+H+S +  AGL +L  G+ V     +    G
Sbjct: 134 EGSVKWFKDDKGFGFVTTD---DGGKDVFVHKSILRRAGLESLQSGERVLMRVTEA-PKG 189

Query: 64  KYS 66
           + +
Sbjct: 190 REA 192



 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           R ++KW+N  KG+GF+ P    +   D FLH S ++  GL +L EG  V    +     G
Sbjct: 44  RATVKWFNGVKGFGFVAP---ADGTPDAFLHASVLSRVGLSDLAEGAEV-MVVIGPGPKG 99

Query: 64  KYSAENLKLV 73
                 ++LV
Sbjct: 100 PQ---VIRLV 106


>gi|332162199|ref|YP_004298776.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|325666429|gb|ADZ43073.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
          Length = 69

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  +GYGFI+P    +   DV++ ++A+A+    +L+EGQ V +   ++  
Sbjct: 3  LKMGRVKWFNQSEGYGFISPH---DGSLDVYVSKTAIANTKNKSLSEGQDVEFSTYRS-I 58

Query: 62 NGKYSAENL 70
          +G  +A+ +
Sbjct: 59 HGPPAADVI 67


>gi|221116635|ref|XP_002154000.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 719

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+  
Sbjct: 449 GTVKWFNVRNGYGFI---HRNDTQNDVFVHQTAIVKNNPNKYLRSVGDGETVEFDVVEGV 505

Query: 61  ANGKYSAENLK 71
               + A N+ 
Sbjct: 506 KG--HEAINVT 514


>gi|119718152|ref|YP_925117.1| cold-shock DNA-binding protein family protein [Nocardioides sp.
          JS614]
 gi|119538813|gb|ABL83430.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614]
          Length = 131

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ +KG+GF++ E    +G DV++ RS    AG  +L  G  V +   Q   
Sbjct: 1  MPTGKVKWFDAEKGFGFLSQE----NGPDVYV-RSEALPAGTSSLKAGTRVEFGIAQGRR 55

Query: 62 NGKYSAENLKLV 73
               A  ++++
Sbjct: 56 G--DQALQVRIL 65


>gi|237804204|ref|ZP_04591789.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331026185|gb|EGI06241.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 41

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 4/45 (8%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          W+N +KG+GFITP    +SGDD+F+H  A+ S G  +L EGQ V+
Sbjct: 1  WFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVS 41


>gi|55822802|ref|YP_141243.1| cold shock protein A [Streptococcus thermophilus CNRZ1066]
 gi|55738787|gb|AAV62428.1| cold shock protein A [Streptococcus thermophilus CNRZ1066]
          Length = 72

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G+I W+N DKGYGFI      +   DVF +  ++         EGQ VT+D      
Sbjct: 4  MNKGTINWFNADKGYGFI----MADDMQDVFAYLISIQGNDFKKYDEGQKVTFDIKMTSR 59

Query: 62 N 62
           
Sbjct: 60 G 60


>gi|213510928|ref|NP_001133543.1| Y-box-binding protein 2-A [Salmo salar]
 gi|209154422|gb|ACI33443.1| Y-box-binding protein 2-A [Salmo salar]
          Length = 328

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D V+ 
Sbjct: 31 QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEA 87

Query: 60 DANGKYSAEN 69
           A G  +A  
Sbjct: 88 -AKGSEAANV 96


>gi|119503292|ref|ZP_01625376.1| cold shock protein, CspA family-like protein [marine gamma
           proteobacterium HTCC2080]
 gi|119460938|gb|EAW42029.1| cold shock protein, CspA family-like protein [marine gamma
           proteobacterium HTCC2080]
          Length = 138

 Score = 73.4 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           H G+IKW+N  KG+GFI  +     G +VF+H   V      ++ +GQ V Y    +D  
Sbjct: 74  HEGNIKWFNATKGFGFIVGD----DGAEVFVHYRNVEGLTKRSIKQGQRVAYSVRASDRG 129

Query: 63  GKYSAENLKLV 73
               AE +K V
Sbjct: 130 --PQAEGVKAV 138


>gi|332812662|ref|XP_001136258.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
           troglodytes]
          Length = 325

 Score = 73.4 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 62  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 119 -KGAEAANV 126


>gi|194751983|ref|XP_001958302.1| GF10852 [Drosophila ananassae]
 gi|190625584|gb|EDV41108.1| GF10852 [Drosophila ananassae]
          Length = 347

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G++V +D V  
Sbjct: 62  TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 118

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 119 E-KGNEAANV 127


>gi|62089378|dbj|BAD93133.1| CSDA protein variant [Homo sapiens]
          Length = 134

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 26 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 82

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 83 -KGAEAANV 90


>gi|89068841|ref|ZP_01156224.1| cold shock DNA-binding domain protein [Oceanicola granulosus
          HTCC2516]
 gi|89045611|gb|EAR51674.1| cold shock DNA-binding domain protein [Oceanicola granulosus
          HTCC2516]
          Length = 171

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++KW++P KG+GFI  E   + G D+ LH + + + G  ++ +G  +  + VQ+ 
Sbjct: 1  MTVTGTVKWFDPAKGFGFIVAE---DGGPDILLHANVLRNFGQSSVADGSGIVVE-VQDT 56

Query: 61 ANGKYSAENLKLVPKS 76
            GK +   ++L P  
Sbjct: 57 PRGKQAVAVVELTPPE 72



 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  E   DVF+H   +  +GL +L  G+ ++   V +   GK 
Sbjct: 99  RVKWFDKGKGFGFANVFGLAE---DVFVHIEVLRRSGLSDLQPGEAISLR-VMDGKRGKM 154

Query: 66  SAEN 69
           + E 
Sbjct: 155 AMEV 158


>gi|262201217|ref|YP_003272425.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
 gi|262084564|gb|ACY20532.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
          Length = 155

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ +KG+GF+  E     G+DV++  SA+   G+  L  GQ V +       
Sbjct: 19 VPTGKVKWYDAEKGFGFLAQE----DGEDVYVRSSAL-PDGVEGLKPGQRVEFGMA-AGR 72

Query: 62 NGKYSAENLKLVPKSS 77
           G  +     L P  S
Sbjct: 73 RGPQALSVTVLEPAPS 88


>gi|54022606|ref|YP_116848.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54014114|dbj|BAD55484.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 138

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF++ +     G+DV++  SA+   G+  L  GQ V +       
Sbjct: 1  MPTGRVKWYDVEKGFGFLSQD----EGEDVYVRSSAL-PEGVEGLKPGQRVEFGMAAGRR 55

Query: 62 NGKYSAENLKLVP 74
               A +LKL+ 
Sbjct: 56 G--PQALSLKLIE 66


>gi|167847488|ref|ZP_02472996.1| cold-shock domain family protein [Burkholderia pseudomallei
          B7210]
          Length = 78

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          +GFITPEG    G+D+F H S +   G   L E Q V ++ V+    G  +A N+K +
Sbjct: 26 FGFITPEG---GGEDLFAHFSEIRVDGFKTLQENQKVEFE-VKTGPKGLQAA-NIKPL 78


>gi|312193994|ref|YP_004014055.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
 gi|311225330|gb|ADP78185.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c]
          Length = 131

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ DKG+GF++ +     G DVF+H++A+  AG+  L  G  V +       
Sbjct: 1  MPTGKVKWYDVDKGFGFLSRD----DGGDVFVHKAAL-PAGVEKLRAGDRVEFGVAAGRK 55

Query: 62 NGKYSAENLKLVPK 75
               A +L+++ +
Sbjct: 56 G--DQALSLRILAE 67


>gi|148555471|ref|YP_001263053.1| cold-shock DNA-binding protein family protein [Sphingomonas
          wittichii RW1]
 gi|148500661|gb|ABQ68915.1| cold-shock DNA-binding protein family [Sphingomonas wittichii
          RW1]
          Length = 198

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G++KW++  +G+GFI  +G      DV +H S +   G   L EG  +  + V  D  
Sbjct: 36 GAVKWFDATRGFGFIATDGDR---GDVLVHFSVLRDHGRRTLPEGARIACEVVARDRG 90



 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
           +KW+N  KGYGF+  +G T    D+F+H   V  AGL +L
Sbjct: 137 VKWFNRLKGYGFLVRDGET---QDIFIHMETVRRAGLPDL 173


>gi|2739396|gb|AAB94634.1| Y-box protein [Drosophila melanogaster]
          Length = 359

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 7/69 (10%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYDYVQND 60
            G++KW+N   GYGFI    + E   DVF+H+SA+A+     + ++ +G++V +D V  +
Sbjct: 64  TGTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIANNPKKAVRSVGDGEVVEFDVVIGE 120

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 121 -KGNEAANV 128


>gi|196007122|ref|XP_002113427.1| hypothetical protein TRIADDRAFT_64023 [Trichoplax adhaerens]
 gi|190583831|gb|EDV23901.1| hypothetical protein TRIADDRAFT_64023 [Trichoplax adhaerens]
          Length = 279

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G +KW+N  +GYGFI  +   ++G+DVF+H++A+ +      L ++ + ++V +D + + 
Sbjct: 31 GKVKWFNVKRGYGFIHRD---DTGEDVFVHQTAIQANNPKKYLRSVGDEEVVEFDVL-SG 86

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 87 PKGLEAANV 95


>gi|457262|gb|AAA36569.1| nuclease sensitive element binding protein-1 [Homo sapiens]
          Length = 322

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 60  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 116

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 117 -KGAEAANV 124


>gi|238784536|ref|ZP_04628544.1| Cold shock-like protein [Yersinia bercovieri ATCC 43970]
 gi|238714599|gb|EEQ06603.1| Cold shock-like protein [Yersinia bercovieri ATCC 43970]
          Length = 65

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  +GYGFI+P    + G DV++ ++A+A+    +L+EGQ V +   ++  +G
Sbjct: 1  MGRVKWFNQSEGYGFISPH---DGGLDVYVSKTAIANTKNRSLSEGQDVEFSTYRS-IHG 56

Query: 64 KYSAENL 70
            +A+ +
Sbjct: 57 PSAADVI 63


>gi|46202227|ref|ZP_00053533.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
           MS-1]
          Length = 167

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +K+++ +KG+GF+  +   E G DVF+H  A+  +G+  L  GQ V           
Sbjct: 103 EGVVKFFSAEKGFGFVACD---EGGKDVFVHVKALERSGIKTLESGQRVRVTTTLGLKG- 158

Query: 64  KYSAENLKLV 73
              A+ + ++
Sbjct: 159 -PQADTVAII 167



 Score = 66.9 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 6  SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          ++KW+N  KG+GF+ P   ++   D FLH SA+  AGL  + EG  +  D        +
Sbjct: 19 TVKWFNASKGFGFVAP---SDGSPDAFLHISALERAGLTQVAEGATLVVDLGAGQRGPQ 74


>gi|312132318|ref|YP_003999657.1| cspc1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773581|gb|ADQ03069.1| CspC1 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 79

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
          + +G++K++   KG+GFI P+   + G DVF+H + +   G       L EG  V Y   
Sbjct: 1  MAQGTVKFFLAKKGFGFIQPD---DGGGDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPA 57

Query: 58 QNDANGKYSAENLKLVPKSS 77
           +   G  + + +KL    +
Sbjct: 58 SSG-KGTQAKDVVKLSSGEA 76


>gi|108801438|ref|YP_641635.1| cold-shock DNA-binding protein family protein [Mycobacterium sp.
          MCS]
 gi|108771857|gb|ABG10579.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS]
          Length = 147

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ +KG+GF++ E     G+DV++  SA+  AG+  L  GQ V +       
Sbjct: 12 VPTGRVKWYDAEKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGVA-AGR 65

Query: 62 NGKYS 66
           G  +
Sbjct: 66 RGPQA 70


>gi|255034693|ref|YP_003085314.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
          fermentans DSM 18053]
 gi|254947449|gb|ACT92149.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
          18053]
          Length = 63

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++RG++K++N  KG+GFI PE     G D+F+H + +       + E   V+Y+  +   
Sbjct: 1  MNRGTVKFFNDTKGFGFIAPE---NGGSDIFVHTTGLNDD----IRENDSVSYEVEEGRK 53

Query: 62 NGKYSAENLKLV 73
              +A N+ ++
Sbjct: 54 G--LNAVNVTII 63


>gi|195428579|ref|XP_002062350.1| GK16710 [Drosophila willistoni]
 gi|194158435|gb|EDW73336.1| GK16710 [Drosophila willistoni]
          Length = 344

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G++V +D V  
Sbjct: 48  TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 104

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 105 E-KGNEAANV 113


>gi|1402757|gb|AAC80247.1| major cold-shock protein [Listeria grayi]
          Length = 45

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFI+ E     G DVF+H SA+   G   L EGQ VT+D  ++D 
Sbjct: 1  EKGFGFISRE----DGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESDR 45


>gi|29477111|gb|AAH50156.1| Y box binding protein 1 [Danio rerio]
          Length = 309

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 98  -KGAEAANV 105


>gi|82802831|gb|ABB92461.1| rcNSEP1 [Pan troglodytes]
          Length = 319

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 57  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 113

Query: 61  ANGKYSAENLK 71
              K  A N+ 
Sbjct: 114 KGAK--AANVT 122


>gi|194131800|gb|ACF33224.1| Y-box protein Lyb3 [Lethenteron japonicum]
          Length = 171

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 65  GTVKWFNVKNGYGFI---NRNDTKEDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 121

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 122 -KGAEAANV 129


>gi|239834349|ref|ZP_04682677.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301]
 gi|239822412|gb|EEQ93981.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301]
          Length = 69

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 19 ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          I PE   +   D F+H SAV  AG+  L EGQ V+++ V +  +GK +A+NL+ +
Sbjct: 18 IQPE---DGSPDEFVHISAVERAGMHTLNEGQKVSFELVADRRSGKKAADNLQAL 69


>gi|212709797|ref|ZP_03317925.1| hypothetical protein PROVALCAL_00845 [Providencia alcalifaciens
          DSM 30120]
 gi|212687608|gb|EEB47136.1| hypothetical protein PROVALCAL_00845 [Providencia alcalifaciens
          DSM 30120]
          Length = 71

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H G +KW++  +GYGFI+P      GDD+F+   ++A+  + +L EGQ V +   +N  
Sbjct: 5  LHMGRVKWFDAKEGYGFISP---RNGGDDIFVTTKSLANKKIKSLFEGQNVEFSVTRNSD 61

Query: 62 N 62
           
Sbjct: 62 G 62


>gi|83815315|ref|YP_445098.1| cold-shock DNA-binding domain-containing protein [Salinibacter
          ruber DSM 13855]
 gi|294506974|ref|YP_003571032.1| 'Cold-shock' DNA-binding domain [Salinibacter ruber M8]
 gi|83756709|gb|ABC44822.1| 'Cold-shock' DNA-binding domain, putative [Salinibacter ruber DSM
          13855]
 gi|294343302|emb|CBH24080.1| 'Cold-shock' DNA-binding domain [Salinibacter ruber M8]
          Length = 69

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW++P +GYGF+ P+      DDVFLH S V      +L EG  + ++  + + 
Sbjct: 1  METGTVKWFSPAEGYGFVEPD---NGEDDVFLHHSEVPDE---DLEEGDRLEFEIEETEK 54

Query: 62 NGKYSAENLKLV 73
              +A N++ +
Sbjct: 55 G--LNAVNIEAL 64


>gi|325286552|ref|YP_004262342.1| cold-shock DNA-binding domain-containing protein [Cellulophaga
          lytica DSM 7489]
 gi|324322006|gb|ADY29471.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM
          7489]
          Length = 77

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 7/68 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K+YN  KGYGFIT +   E+G D+F+H +++       L EG  V Y   +   
Sbjct: 14 LMTGTVKFYNDSKGYGFITND---ETGKDIFVHATSLNGV---ELNEGDKVEY-VEEEGR 66

Query: 62 NGKYSAEN 69
           G  +A+ 
Sbjct: 67 KGVVAAQV 74


>gi|238757626|ref|ZP_04618810.1| Cold shock-like protein [Yersinia aldovae ATCC 35236]
 gi|238795858|ref|ZP_04639371.1| Cold shock-like protein [Yersinia mollaretii ATCC 43969]
 gi|238704131|gb|EEP96664.1| Cold shock-like protein [Yersinia aldovae ATCC 35236]
 gi|238720321|gb|EEQ12124.1| Cold shock-like protein [Yersinia mollaretii ATCC 43969]
 gi|330862904|emb|CBX73040.1| cold shock-like protein cspE [Yersinia enterocolitica W22703]
          Length = 77

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  +GYGFI+P    +   DV++ ++A+A+    +L+EGQ V +   ++  
Sbjct: 11 LKMGRVKWFNQSEGYGFISPH---DGSLDVYVSKTAIANTKNKSLSEGQDVEFSTYRS-I 66

Query: 62 NGKYSAENL 70
          +G  +A+ +
Sbjct: 67 HGPSAADVI 75


>gi|254363803|ref|ZP_04979849.1| cold shock-like protein B cspB [Mycobacterium tuberculosis str.
          Haarlem]
 gi|134149317|gb|EBA41362.1| cold shock-like protein B cspB [Mycobacterium tuberculosis str.
          Haarlem]
          Length = 135

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+PDKG+GF++ E     G+DV++  SA+ +  +  L  GQ V +    +  
Sbjct: 1  MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSALPTF-VEALKAGQRVEFGIA-SGR 54

Query: 62 NGKYSAENLKLVPK 75
           G   A +L+L+  
Sbjct: 55 RGPQ-ALSLRLIEP 67


>gi|3821923|gb|AAC69703.1| major cold shock protein [Lactobacillus helveticus]
          Length = 50

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          KG+GFIT         DVF+H SA+ + G  +L EGQ V+YD  Q    G  +A 
Sbjct: 1  KGFGFIT----GSDNKDVFVHFSAIKTDGFKSLEEGQKVSYDVEQGG-RGPQAAN 50


>gi|83313007|ref|YP_423271.1| cold shock protein [Magnetospirillum magneticum AMB-1]
 gi|82947848|dbj|BAE52712.1| Cold shock protein [Magnetospirillum magneticum AMB-1]
          Length = 200

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +K+++ +KG+GF+  +   + G DVF+H  A+  +G+  L  GQ V           
Sbjct: 136 EGVVKFFSAEKGFGFVACD---QGGKDVFVHVKALERSGIKTLESGQRVRVTTTLGLKG- 191

Query: 64  KYSAENLKLV 73
              A+ + ++
Sbjct: 192 -PQADTVAII 200



 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           ++KW+N  KG+GF+ P   ++   D FLH SA+  AGL  + EG  +  D        +
Sbjct: 52  TVKWFNASKGFGFVAP---SDGSPDAFLHISALERAGLTQVAEGATLVVDLGAGQRGPQ 107


>gi|254495787|ref|ZP_05108699.1| cold shock-like protein [Legionella drancourtii LLAP12]
 gi|254354944|gb|EET13567.1| cold shock-like protein [Legionella drancourtii LLAP12]
          Length = 72

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G++K +N  KGYGFITP+        VF+H S VA AG   L E Q ++Y   + +  
Sbjct: 6  GTVKRFNKIKGYGFITPDTGESE---VFVHFSEVAVAGYKELKENQRISYVLREGEKG 60


>gi|9653686|gb|AAB46889.2| TSH receptor suppressor element-binding protein-1 [Rattus sp.]
          Length = 322

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 116 -KGAEAANV 123


>gi|123441859|ref|YP_001005842.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122088820|emb|CAL11626.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|318606254|emb|CBY27752.1| cold shock protein CspB [Yersinia enterocolitica subsp.
          palearctica Y11]
          Length = 69

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  +GYGFI+P    +   DV++ ++A+A+    +L+EGQ V +   ++  
Sbjct: 3  LKMGRVKWFNQSEGYGFISPH---DGSLDVYVSKTAIANTKNKSLSEGQDVEFSTYRS-I 58

Query: 62 NGKYSAENL 70
          +G  +A+ +
Sbjct: 59 HGPSAADVI 67


>gi|54024961|ref|YP_119203.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54016469|dbj|BAD57839.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 122

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++ W++ +KG+GFITP+  + +   VF+   A+ + G   L  G  V Y   +  A  +
Sbjct: 54  GTVAWFDAEKGFGFITPDDRSPA---VFVEFHAIEAVGYRTLVAGGPVVYRAEETKAGPE 110

Query: 65  YSAE 68
             A 
Sbjct: 111 AVAV 114


>gi|212716929|ref|ZP_03325057.1| hypothetical protein BIFCAT_01873 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225352748|ref|ZP_03743771.1| hypothetical protein BIFPSEUDO_04378 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|212660214|gb|EEB20789.1| hypothetical protein BIFCAT_01873 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225156355|gb|EEG69924.1| hypothetical protein BIFPSEUDO_04378 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 129

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++W++ +KGYGFI      E G DVFL  +A+   G+  L +G  V Y  V+   
Sbjct: 1  MPSGRVRWFDANKGYGFIQ----NEQGADVFLPAAAL-PEGVKTLRKGAKVEYSVVEG-R 54

Query: 62 NGKYS 66
           G  +
Sbjct: 55 RGPQA 59


>gi|147903761|ref|NP_001079367.1| nuclease-sensitive element-binding protein 1 [Xenopus laevis]
 gi|27370848|gb|AAH41191.1| Ybx1 protein [Xenopus laevis]
 gi|76779926|gb|AAI06324.1| Ybx1 protein [Xenopus laevis]
          Length = 303

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 39  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 96  -KGAEAANV 103


>gi|149898790|gb|ABR27857.1| predicted RNA-binding protein [Triatoma infestans]
          Length = 300

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G++KW+N   GYGFI      ++G+DVF+H+SA+        + ++ +G+ V +D V  
Sbjct: 56  TGTVKWFNVKSGYGFI---NRKDTGEDVFVHQSAIIKNNPKKAVRSVGDGETVEFDVVAG 112

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 113 E-KGNEAANV 121


>gi|140245|sp|P21573|YBOX1_XENLA RecName: Full=Nuclease-sensitive element-binding protein 1;
           AltName: Full=Y-box transcription factor; AltName:
           Full=Y-box-binding protein 1; Short=YB-1
 gi|214155|gb|AAA49715.1| DNA-binding protein [Xenopus laevis]
          Length = 303

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 39  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 96  -KGAEAANV 103


>gi|229488838|ref|ZP_04382704.1| cold-shock DNA-binding domain protein [Rhodococcus erythropolis
          SK121]
 gi|229324342|gb|EEN90097.1| cold-shock DNA-binding domain protein [Rhodococcus erythropolis
          SK121]
          Length = 140

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ +KG+GF++ E     G+DV++  SA+   G+  L  GQ V +       
Sbjct: 4  VPTGKVKWYDVEKGFGFLSQE----EGEDVYVRASAL-PEGVEGLKAGQRVEFGMAAGRR 58

Query: 62 NGKYSAENLKLVPKS 76
               A +LK++  +
Sbjct: 59 G--PQALSLKVLEPA 71


>gi|332842519|ref|XP_001134851.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
           troglodytes]
          Length = 319

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 57  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 113

Query: 61  ANGKYSAENLK 71
              K  A N+ 
Sbjct: 114 KGAK--AANVT 122


>gi|226474422|emb|CAX71697.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 203

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|187607756|ref|NP_001119929.1| nuclease-sensitive element-binding protein 1 isoform 1 [Danio
           rerio]
 gi|118763928|gb|AAI28886.1| Y box binding protein 1 [Danio rerio]
 gi|169159049|emb|CAQ15227.1| Y box binding protein 1 [Danio rerio]
          Length = 309

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 98  -KGAEAANV 105


>gi|340419|gb|AAA61308.1| Y box binding protein-1 [Homo sapiens]
          Length = 317

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117

Query: 61  ANGKYSAEN 69
             G+ +A  
Sbjct: 118 -KGEEAANV 125


>gi|18859137|ref|NP_571695.1| nuclease-sensitive element-binding protein 1 isoform 2 [Danio
           rerio]
 gi|3695368|gb|AAC62774.1| zfY1 [Danio rerio]
 gi|169642049|gb|AAI60650.1| Y box binding protein 1 [Danio rerio]
          Length = 310

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 98  -KGAEAANV 105


>gi|325287735|ref|YP_004263525.1| cold-shock DNA-binding domain-containing protein [Cellulophaga
          lytica DSM 7489]
 gi|324323189|gb|ADY30654.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM
          7489]
          Length = 63

 Score = 72.7 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N +KG+GFIT EGS   G D+F+H S +       + EG  V Y+  +   
Sbjct: 1  MSKGTVKFFNDEKGFGFITEEGS---GKDIFVHISGLVDE----IREGDEVEYEVTEGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N++++
Sbjct: 54 G--LNAANVRVL 63


>gi|293345053|ref|XP_002725927.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 3 [Rattus
           norvegicus]
 gi|293356924|ref|XP_002729026.1| PREDICTED: lin-28 homolog B isoform 2 [Rattus norvegicus]
 gi|149046920|gb|EDL99668.1| rCG58531, isoform CRA_b [Rattus norvegicus]
          Length = 316

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EG+      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 74  TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 133

Query: 60  DAN 62
              
Sbjct: 134 PKG 136


>gi|73909033|gb|AAI03638.1| Ybx1 protein [Rattus norvegicus]
          Length = 326

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 116 -KGAEAANV 123


>gi|297467632|ref|XP_612469.5| PREDICTED: lin-28 homolog B [Bos taurus]
          Length = 254

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 38  TGHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97

Query: 60  DAN 62
              
Sbjct: 98  SKG 100


>gi|3892588|emb|CAA76696.1| cold shock protein C [Lactococcus lactis subsp. cremoris MG1363]
          Length = 66

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G I W+N DKGYGFI      +   DVF +  ++         EGQ VT+D  +  +
Sbjct: 1  MNKGKINWFNADKGYGFI----MADDMQDVFAYLLSIQGNDFKKYDEGQKVTFDI-KMTS 55

Query: 62 NGKYSAEN 69
           G+Y++  
Sbjct: 56 RGRYASNV 63


>gi|300676881|gb|ADK26753.1| lin-28 homolog B [Zonotrichia albicollis]
          Length = 245

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 26 TGHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 85

Query: 60 DAN 62
             
Sbjct: 86 SKG 88


>gi|119357559|ref|YP_912203.1| cold-shock DNA-binding protein family protein [Chlorobium
          phaeobacteroides DSM 266]
 gi|119354908|gb|ABL65779.1| cold-shock DNA-binding protein family [Chlorobium
          phaeobacteroides DSM 266]
          Length = 85

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
          + R  +KW++  KGYGFI    + E G+D+F+H SA+        L +   V ++  +  
Sbjct: 1  MARSKVKWFDGKKGYGFIV---NPEGGEDIFVHFSAIICEQSFKVLNQDADVDFELEKTQ 57

Query: 61 ANGKYSAENLKLVP 74
              + A+N++ VP
Sbjct: 58 KG--FQAKNVREVP 69


>gi|303289687|ref|XP_003064131.1| highly cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
 gi|226454447|gb|EEH51753.1| highly cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
          Length = 325

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
            D+G+GFITP+G    G+DVF H SA+    +  L+EG  V YD   +D  GK  AEN+ 
Sbjct: 83  NDRGFGFITPDG---GGEDVFCHFSAIKDGNM--LSEGSRVDYDESFDDRKGKPRAENVT 137


>gi|222624666|gb|EEE58798.1| hypothetical protein OsJ_10341 [Oryza sativa Japonica Group]
          Length = 233

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K ++   G+GFITP+   + G+D+F+H+S++      +L +  ++      +  +G
Sbjct: 7  KGTVKGFDATNGFGFITPD---DDGEDLFIHQSSLKFDDYRSLNDSDVIELSVG-SGNDG 62

Query: 64 KYSAENLKLV 73
          +  A ++  +
Sbjct: 63 RNKAVDVTAL 72


>gi|224080514|ref|XP_002194901.1| PREDICTED: Y box binding protein 1 [Taeniopygia guttata]
          Length = 324

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 58  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 115 -KGAEAANV 122


>gi|329764741|ref|ZP_08256336.1| cold-shock DNA-binding domain-containing protein [Candidatus
          Nitrosoarchaeum limnia SFB1]
 gi|329138791|gb|EGG43032.1| cold-shock DNA-binding domain-containing protein [Candidatus
          Nitrosoarchaeum limnia SFB1]
          Length = 63

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 10/70 (14%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI  E    SGDD+F+H+S V   G   + EG  V ++  Q   
Sbjct: 1  MEQGTVKWFNRTKGFGFIERE----SGDDLFVHKSDV--DGF--INEGDKVEFEVGQGQK 52

Query: 62 NGKYSAENLK 71
              +A+ +K
Sbjct: 53 G--PAAQKVK 60


>gi|257069730|ref|YP_003155985.1| cold-shock DNA-binding protein family [Brachybacterium faecium
          DSM 4810]
 gi|256560548|gb|ACU86395.1| cold-shock DNA-binding protein family [Brachybacterium faecium
          DSM 4810]
          Length = 128

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG +K+Y+ +KG+GFI  +   E G  V++H + +   G+  L  G  V +D V    
Sbjct: 1  MPRGKVKFYDAEKGFGFILDD---EDGQSVYVHATNL-PDGVTTLRPGTRVDFDMVDGRR 56

Query: 62 NGKYSAENLKLVPKS 76
            +  A  L+L+  +
Sbjct: 57 GPQVLA--LQLLEPA 69


>gi|988283|gb|AAA75476.1| mYB-1b [Mus musculus]
          Length = 322

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 116 -KGAEAANV 123


>gi|296484122|gb|DAA26237.1| lin-28 homolog B-like [Bos taurus]
          Length = 255

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 38  TGHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97

Query: 60  DAN 62
              
Sbjct: 98  SKG 100


>gi|84498519|ref|ZP_00997289.1| cold shock protein [Janibacter sp. HTCC2649]
 gi|84381262|gb|EAP97146.1| cold shock protein [Janibacter sp. HTCC2649]
          Length = 134

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K+Y+ +KG+GF++ +   E G DVF+  SA+   G+  L  G  + +  V+   
Sbjct: 1  MPTGKVKFYDSEKGFGFVSTDDPAEGG-DVFVPSSAL-PEGVTALKNGARIEFGIVEGRR 58

Query: 62 NGKYSAENLKLVPKSSN 78
               A +++L+  +++
Sbjct: 59 G--AQALSVRLLEPAAS 73


>gi|62751871|ref|NP_001015855.1| cold shock domain protein A [Xenopus (Silurana) tropicalis]
 gi|59861901|gb|AAH90361.1| cold shock domain protein A [Xenopus (Silurana) tropicalis]
          Length = 248

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D V  
Sbjct: 37  QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAG 93

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 94  E-KGAEAANV 102


>gi|297478551|ref|XP_002707884.1| PREDICTED: lin-28 homolog B (C. elegans)-like [Bos taurus]
          Length = 254

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 38  TGHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97

Query: 60  DAN 62
              
Sbjct: 98  SKG 100


>gi|300676769|gb|ADK26645.1| lin-28 homolog B [Zonotrichia albicollis]
          Length = 245

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 26 TGHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 85

Query: 60 DAN 62
             
Sbjct: 86 SKG 88


>gi|301347534|ref|ZP_07228275.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB056]
          Length = 60

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
          N  KG+GFI     T+ G DVF H S + + G   L EGQ V +   Q        A N+
Sbjct: 1  NETKGFGFIQ----TDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQGKKG--PQASNI 54

Query: 71 KLV 73
           +V
Sbjct: 55 TIV 57


>gi|1402759|gb|AAC80246.1| major cold-shock protein [Listeria innocua]
          Length = 45

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFI  E    +GDDVF+H SA+   G  +L EGQ VT+D  +   
Sbjct: 1  EKGFGFIERE----NGDDVFVHFSAIQGDGFKSLDEGQAVTFDVEEGQR 45


>gi|130488167|ref|NP_001076254.1| nuclease-sensitive element-binding protein 1 [Oryctolagus
           cuniculus]
 gi|75069491|sp|Q28618|YBOX1_RABIT RecName: Full=Nuclease-sensitive element-binding protein 1;
           AltName: Full=CCAAT-binding transcription factor I
           subunit A; Short=CBF-A; AltName: Full=Enhancer factor I
           subunit A; Short=EFI-A; AltName: Full=Y-box
           transcription factor; AltName: Full=Y-box-binding
           protein 1; Short=YB-1; AltName: Full=p50
 gi|608518|gb|AAA66069.1| p50 [Oryctolagus cuniculus]
          Length = 324

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 118 -KGAEAANV 125


>gi|195173115|ref|XP_002027340.1| GL15684 [Drosophila persimilis]
 gi|198465413|ref|XP_002134972.1| GA23502 [Drosophila pseudoobscura pseudoobscura]
 gi|194113183|gb|EDW35226.1| GL15684 [Drosophila persimilis]
 gi|198150149|gb|EDY73599.1| GA23502 [Drosophila pseudoobscura pseudoobscura]
          Length = 335

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G++V +D V  
Sbjct: 50  TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 106

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 107 E-KGNEAANV 115


>gi|317123896|ref|YP_004098008.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
 gi|315587984|gb|ADU47281.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM
          43043]
          Length = 131

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +++++ DKG+GFI      + G DVFLH +A+   G+  L +G  V +  V+   
Sbjct: 1  MPTGKVRFFDADKGFGFIA----EDDGADVFLHANAL-PEGVTTLKKGTRVEFGIVEGRK 55

Query: 62 NGKYSAENLKLVPKS 76
               A  ++++  +
Sbjct: 56 G--AQALQVRVLDPA 68


>gi|21673445|ref|NP_661510.1| cold shock-like protein CspG [Chlorobium tepidum TLS]
 gi|21646547|gb|AAM71852.1| cold shock-like protein CspG [Chlorobium tepidum TLS]
          Length = 97

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
          + +  +KW++  KGYGFI    + + G+D+F+H S++ S      L +   V YD  +  
Sbjct: 1  MAKSKVKWFDGKKGYGFI---LNPDGGEDIFVHFSSIISDQSFKVLNQDADVEYDLDKTQ 57

Query: 61 ANGKYSAENLKLVPKSS 77
                A+N++ +  S+
Sbjct: 58 KG--LQAKNVRELSVSA 72


>gi|77736623|ref|NP_001029990.1| protein lin-28 homolog B [Gallus gallus]
 gi|116248186|sp|Q45KJ4|LN28B_CHICK RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
 gi|71724932|gb|AAZ38896.1| LIN28B [Gallus gallus]
          Length = 250

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + Y ++ 
Sbjct: 32 GHCKWFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTYKKSS 91

Query: 61 AN 62
            
Sbjct: 92 KG 93


>gi|61367907|gb|AAX43065.1| nuclease sensitive element binding protein 1 [synthetic construct]
 gi|61369330|gb|AAX43318.1| nuclease sensitive element binding protein 1 [synthetic construct]
          Length = 325

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 118 -KGAEAANV 125


>gi|158312011|ref|YP_001504519.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
          EAN1pec]
 gi|158107416|gb|ABW09613.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
          Length = 132

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ D+G+GF++ +   +   DVF+H++A+  +G+  L  G  V +       
Sbjct: 1  MPTGKVKWFDVDRGFGFLSRD---DGDADVFVHKAAL-PSGVDRLKPGDRVEFGIAAGRK 56

Query: 62 NGKYSAENLKLV 73
               A +L+++
Sbjct: 57 G--DQALSLRIL 66


>gi|326801255|ref|YP_004319074.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
 gi|326552019|gb|ADZ80404.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
          Length = 65

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KG+GFI  E     G D+F+H   V   G+  + +   V ++      
Sbjct: 1  MKTGKVKWFNAQKGFGFIIQE----DGTDIFVHFKDVKG-GIDAIKDNDRVEFEVADGRK 55

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 56 G--QQAVNVKKI 65


>gi|296207663|ref|XP_002750741.1| PREDICTED: nuclease-sensitive element-binding protein 1-like
           [Callithrix jacchus]
          Length = 323

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 60  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 116

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 117 -KGAEAANV 124


>gi|149052644|gb|EDM04461.1| rCG63497 [Rattus norvegicus]
          Length = 322

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI    S ++ +DVF+H++A+        L ++ +G+ V ++ V+ +
Sbjct: 59  GTVKWFNVRNGYGFI---NSNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFEVVEGE 115

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 116 -KGAEAANV 123


>gi|149035443|gb|EDL90124.1| rCG50488, isoform CRA_a [Rattus norvegicus]
          Length = 305

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 42  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 98

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 99  -KGAEAANV 106


>gi|121934029|gb|AAI27713.1| LIN28B protein [Homo sapiens]
 gi|121934102|gb|AAI27714.1| LIN28B protein [Homo sapiens]
 gi|146424334|gb|AAI41961.1| LIN28B protein [Homo sapiens]
 gi|152061020|gb|AAI50539.1| LIN28B protein [Homo sapiens]
 gi|152061071|gb|AAI50538.1| LIN28B protein [Homo sapiens]
          Length = 227

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 8  TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 67

Query: 60 DAN 62
             
Sbjct: 68 SKG 70


>gi|116627692|ref|YP_820311.1| cold shock protein A [Streptococcus thermophilus LMD-9]
 gi|116100969|gb|ABJ66115.1| cold-shock DNA-binding protein family [Streptococcus thermophilus
          LMD-9]
 gi|312278224|gb|ADQ62881.1| Cold shock-like protein cspA [Streptococcus thermophilus ND03]
          Length = 66

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G+I W+N DKGYGFI      +   DVF +  ++         EGQ VT+D      
Sbjct: 1  MNKGTINWFNADKGYGFI----MADDMQDVFAYLISIQGNDFKKYDEGQKVTFDIKMTSR 56

Query: 62 N 62
           
Sbjct: 57 G 57


>gi|332703395|ref|ZP_08423483.1| cold-shock DNA-binding domain protein [Desulfovibrio africanus
          str. Walvis Bay]
 gi|332553544|gb|EGJ50588.1| cold-shock DNA-binding domain protein [Desulfovibrio africanus
          str. Walvis Bay]
          Length = 99

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG + W++  +GYGFI      E+G+DVF+    +   G   L +G+ VT+   +    G
Sbjct: 23 RGVVVWFHERRGYGFI----RDETGEDVFVSWPDILRPGFKTLAQGEQVTFTL-KPGEGG 77

Query: 64 KYSAENLKLVPKS 76
          + +AE + L P +
Sbjct: 78 RKAAEVVPLQPSA 90


>gi|325674581|ref|ZP_08154268.1| cold-shock domain family protein [Rhodococcus equi ATCC 33707]
 gi|325554167|gb|EGD23842.1| cold-shock domain family protein [Rhodococcus equi ATCC 33707]
          Length = 140

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ +KG+GF++ E     G+DV++  SA+    +  L  GQ V +D      
Sbjct: 4  VPTGKVKWYDVEKGFGFLSQE----EGEDVYVRASALPGD-VDGLKAGQRVEFDMAAGRR 58

Query: 62 NGKYSAENLKLVPKS 76
               A  ++L+  +
Sbjct: 59 G--PQALKVQLLEPA 71


>gi|45383329|ref|NP_989745.1| nuclease-sensitive element-binding protein 1 [Gallus gallus]
 gi|516701|dbj|BAA05380.1| unnamed protein product [Gallus gallus]
          Length = 326

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 116 -KGAEAANV 123


>gi|3121929|sp|Q52287|CSPA_PHOPO RecName: Full=Major cold shock protein
 gi|1402767|gb|AAC80250.1| major cold-shock protein [Photobacterium phosphoreum]
          Length = 46

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFIT +     G DVF+H  A+AS G   L EGQ V+++  Q   
Sbjct: 1  EKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQK 46


>gi|148673097|gb|EDL05044.1| lin-28 homolog B (C. elegans), isoform CRA_b [Mus musculus]
          Length = 281

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EG+      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 39  TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 98

Query: 60  DAN 62
              
Sbjct: 99  PKG 101


>gi|72170454|ref|XP_792032.1| PREDICTED: similar to ENSANGP00000011455 [Strongylocentrotus
           purpuratus]
 gi|115937083|ref|XP_001186027.1| PREDICTED: similar to ENSANGP00000011455 [Strongylocentrotus
           purpuratus]
          Length = 234

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           ++RG  KW++  K YGF+TP+   +   DVF+H+  +   G  +L   + V Y + Q   
Sbjct: 62  LYRGKCKWFSLAKCYGFLTPD---DGSGDVFVHQRVIKMVGYRSLDTNEEVEYKF-QFSE 117

Query: 62  NGKYS 66
            G+ +
Sbjct: 118 KGREA 122


>gi|27807361|ref|NP_777240.1| nuclease-sensitive element-binding protein 1 [Bos taurus]
 gi|34098946|ref|NP_004550.2| nuclease-sensitive element-binding protein 1 [Homo sapiens]
 gi|332248504|ref|XP_003273402.1| PREDICTED: nuclease-sensitive element-binding protein 1 [Nomascus
           leucogenys]
 gi|332808655|ref|XP_525693.3| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
           troglodytes]
 gi|54040030|sp|P67808|YBOX1_BOVIN RecName: Full=Nuclease-sensitive element-binding protein 1;
           AltName: Full=CCAAT-binding transcription factor I
           subunit A; Short=CBF-A; AltName: Full=DNA-binding
           protein B; Short=DBPB; AltName: Full=Enhancer factor I
           subunit A; Short=EFI-A; AltName: Full=Y-box
           transcription factor; AltName: Full=Y-box-binding
           protein 1; Short=YB-1
 gi|54040031|sp|P67809|YBOX1_HUMAN RecName: Full=Nuclease-sensitive element-binding protein 1;
           AltName: Full=CCAAT-binding transcription factor I
           subunit A; Short=CBF-A; AltName: Full=DNA-binding
           protein B; Short=DBPB; AltName: Full=Enhancer factor I
           subunit A; Short=EFI-A; AltName: Full=Y-box
           transcription factor; AltName: Full=Y-box-binding
           protein 1; Short=YB-1
 gi|162983|gb|AAA30497.1| transcription factor EF1(A) [Bos taurus]
 gi|454152|gb|AAA20871.1| similar to dbpB protein [Homo sapiens]
 gi|12803207|gb|AAH02411.1| Y box binding protein 1 [Homo sapiens]
 gi|14714588|gb|AAH10430.1| Y box binding protein 1 [Homo sapiens]
 gi|15929560|gb|AAH15208.1| Y box binding protein 1 [Homo sapiens]
 gi|23468206|gb|AAH38384.1| Y box binding protein 1 [Homo sapiens]
 gi|41350935|gb|AAH65571.1| Y box binding protein 1 [Homo sapiens]
 gi|47125298|gb|AAH70084.1| Y box binding protein 1 [Homo sapiens]
 gi|47940506|gb|AAH71708.1| Y box binding protein 1 [Homo sapiens]
 gi|58477789|gb|AAH90038.1| Y box binding protein 1 [Homo sapiens]
 gi|61359169|gb|AAX41678.1| nuclease sensitive element binding protein 1 [synthetic construct]
 gi|68534659|gb|AAH98435.1| Y box binding protein 1 [Homo sapiens]
 gi|76779237|gb|AAI06046.1| Y box binding protein 1 [Homo sapiens]
 gi|86821283|gb|AAI05364.1| Y box binding protein 1 [Bos taurus]
 gi|119627554|gb|EAX07149.1| Y box binding protein 1, isoform CRA_b [Homo sapiens]
 gi|123981412|gb|ABM82535.1| Y box binding protein 1 [synthetic construct]
 gi|123996253|gb|ABM85728.1| Y box binding protein 1 [synthetic construct]
 gi|168277900|dbj|BAG10928.1| nuclease sensitive element-binding protein 1 [synthetic construct]
 gi|296488844|gb|DAA30957.1| nuclease-sensitive element-binding protein 1 [Bos taurus]
          Length = 324

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 118 -KGAEAANV 125


>gi|148379732|ref|YP_001254273.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933933|ref|YP_001384029.1| cold shock protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936177|ref|YP_001387571.1| cold shock protein [Clostridium botulinum A str. Hall]
 gi|148289216|emb|CAL83311.1| cold shock protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929977|gb|ABS35477.1| cold shock protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932091|gb|ABS37590.1| cold shock protein [Clostridium botulinum A str. Hall]
          Length = 69

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60
          +H G++KW++ ++GYGFI       +G DV++H   +    L  +L EG+ V +D V+ +
Sbjct: 3  MHTGTVKWFDNERGYGFIA----GNNGKDVYVHSMQIKEKTLNKDLHEGEEVLFDIVEKE 58

Query: 61 ANGKYSAENLKLV 73
                A N++ +
Sbjct: 59 KG--PIAINVQKL 69


>gi|256826183|ref|YP_003150143.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM
          20547]
 gi|256689576|gb|ACV07378.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM
          20547]
          Length = 133

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ DKG+GF+      ++G DVFL  SA+  AG+  L  G  + Y  VQ   
Sbjct: 1  MPTGKVKWFDADKGFGFV----GDDAGSDVFLRASAL-PAGVTTLRPGTRLEYSIVQGRK 55

Query: 62 NGKYSAENLKLV--PKSSN 78
               A +++++  P S  
Sbjct: 56 G--DQAMHVEVLDAPPSVQ 72


>gi|126310761|ref|XP_001378246.1| PREDICTED: similar to lin-28 homolog B (C. elegans), [Monodelphis
           domestica]
          Length = 266

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 47  TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 106

Query: 60  DAN 62
              
Sbjct: 107 SKG 109


>gi|226474424|emb|CAX71698.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 203

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|195020347|ref|XP_001985176.1| GH16919 [Drosophila grimshawi]
 gi|193898658|gb|EDV97524.1| GH16919 [Drosophila grimshawi]
          Length = 345

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G+LV +D V  
Sbjct: 49  TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIG 105

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 106 E-KGNEAANV 114


>gi|203398|gb|AAA40906.1| putative [Rattus norvegicus]
          Length = 322

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 116 -KGAEAANV 123


>gi|988281|gb|AAA75475.1| mYB-1a [Mus musculus]
          Length = 322

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 116 -KGAEAANV 123


>gi|73973951|ref|XP_539064.2| PREDICTED: similar to RNA-binding protein LIN-28 [Canis
          familiaris]
          Length = 251

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 30 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 89

Query: 60 DAN 62
             
Sbjct: 90 SKG 92


>gi|242008099|ref|XP_002424850.1| Nuclease sensitive element-binding protein, putative [Pediculus
          humanus corporis]
 gi|212508400|gb|EEB12112.1| Nuclease sensitive element-binding protein, putative [Pediculus
          humanus corporis]
          Length = 288

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI  + + E   DVF+H++A+        + ++ +G++V +D V  
Sbjct: 26 TGTVKWFNVKSGYGFINRDDTKE---DVFVHQTAIVKNNPKKFVRSVGDGEVVEFDVVVG 82

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 83 E-KGNEAANV 91


>gi|150017640|ref|YP_001309894.1| cold-shock DNA-binding domain-containing protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|149904105|gb|ABR34938.1| putative cold-shock DNA-binding domain protein [Clostridium
          beijerinckii NCIMB 8052]
          Length = 69

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
           G +KW++ ++GYGFI    S + GDDVF+H S +   G   +L E + VT+D  ++   
Sbjct: 5  TGVVKWFDTERGYGFI----SCDKGDDVFVHHSQIKDKGPDKDLHEDESVTFDI-ESGEK 59

Query: 63 GKYSAENLKL 72
          G  +    KL
Sbjct: 60 GPMATNVQKL 69


>gi|319442530|ref|ZP_07991686.1| putative cold shock protein [Corynebacterium variabile DSM 44702]
          Length = 129

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ DKG+GF+    S    DDV + RSA+   G+  L  GQ V YD      
Sbjct: 1  MPTGKVKWFDADKGFGFV----SNPGYDDVHVGRSAL-PEGVTELVPGQRVEYDVATGLR 55

Query: 62 NGKYSAENLKLV 73
               A  + ++
Sbjct: 56 GKAPEALRVTVL 67


>gi|255038900|ref|YP_003089521.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
          fermentans DSM 18053]
 gi|254951656|gb|ACT96356.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
          18053]
          Length = 63

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++RG++K++N  KG+GFI PE     G DVF+H + +       + E   V YD  +   
Sbjct: 1  MNRGTVKFFNDTKGFGFIAPEH---GGADVFVHTTGLNDD----IRENDSVYYDVEEGRK 53

Query: 62 NGKYSAENLKLV 73
              +A N+ ++
Sbjct: 54 G--MNAVNVTII 63


>gi|312886814|ref|ZP_07746420.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
          DSM 18603]
 gi|311300641|gb|EFQ77704.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
          DSM 18603]
          Length = 65

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW+N  KGYGFI     T+ G D+F+H   V   G+  + +   V Y+  +   
Sbjct: 1  MKTGKVKWFNTQKGYGFIV----TDDGKDLFVHFKDVQG-GVNAIKDNDNVEYEVEEGRK 55

Query: 62 NGKYSAENLKLV 73
               A N+K +
Sbjct: 56 G--LQAVNVKKI 65


>gi|29437175|gb|AAH49977.1| Y box protein 1 [Mus musculus]
          Length = 322

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 116 -KGAEAANV 123


>gi|256089134|ref|XP_002580671.1| Y box binding protein [Schistosoma mansoni]
 gi|238666270|emb|CAZ36910.1| Y box binding protein, putative [Schistosoma mansoni]
          Length = 167

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|2970679|gb|AAC06034.1| Y box protein [Drosophila silvestris]
          Length = 342

 Score = 71.9 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G+LV +D V  
Sbjct: 49  TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIG 105

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 106 E-KGNEAANV 114


>gi|92373398|ref|NP_113751.3| nuclease-sensitive element-binding protein 1 [Rattus norvegicus]
 gi|113205059|ref|NP_035862.2| nuclease-sensitive element-binding protein 1 [Mus musculus]
 gi|148230224|ref|NP_001091240.1| Y box binding protein 1 [Xenopus laevis]
 gi|51704186|sp|P62961|YBOX1_RAT RecName: Full=Nuclease-sensitive element-binding protein 1;
           AltName: Full=CCAAT-binding transcription factor I
           subunit A; Short=CBF-A; AltName: Full=DNA-binding
           protein B; Short=DBPB; AltName: Full=Enhancer factor I
           subunit A; Short=EFI-A; AltName: Full=Y-box
           transcription factor; AltName: Full=Y-box-binding
           protein 1; Short=YB-1
 gi|51704189|sp|P62960|YBOX1_MOUSE RecName: Full=Nuclease-sensitive element-binding protein 1;
           AltName: Full=CCAAT-binding transcription factor I
           subunit A; Short=CBF-A; AltName: Full=DNA-binding
           protein B; Short=DBPB; AltName: Full=Enhancer factor I
           subunit A; Short=EFI-A; AltName: Full=Y-box
           transcription factor; AltName: Full=Y-box-binding
           protein 1; Short=YB-1
 gi|202435|gb|AAA40577.1| Y-box binding protein 1/DNA binding protein B [Mus musculus]
 gi|220895|dbj|BAA02569.1| DNA binding protein B [Rattus sp.]
 gi|15488612|gb|AAH13450.1| Y box protein 1 [Mus musculus]
 gi|15488999|gb|AAH13620.1| Y box protein 1 [Mus musculus]
 gi|20987294|gb|AAH29747.1| Y box protein 1 [Mus musculus]
 gi|21594391|gb|AAH31472.1| Y box protein 1 [Mus musculus]
 gi|38197295|gb|AAH61634.1| Y box protein 1 [Mus musculus]
 gi|47938951|gb|AAH72486.1| Y box binding protein 1 [Rattus norvegicus]
 gi|68533639|gb|AAH98672.1| Y box binding protein 1 [Rattus norvegicus]
 gi|74178193|dbj|BAE29883.1| unnamed protein product [Mus musculus]
 gi|76779878|gb|AAI06144.1| Y box protein 1 [Mus musculus]
 gi|120577450|gb|AAI30161.1| LOC100037035 protein [Xenopus laevis]
 gi|123227480|emb|CAM27834.1| Y box protein 1 [Mus musculus]
 gi|123228022|emb|CAM22937.1| Y box protein 1 [Mus musculus]
 gi|149035444|gb|EDL90125.1| rCG50488, isoform CRA_b [Rattus norvegicus]
          Length = 322

 Score = 71.9 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 116 -KGAEAANV 123


>gi|148231227|ref|NP_001080330.1| B box-binding protein [Xenopus laevis]
 gi|140247|sp|Q00436|YB3_XENLA RecName: Full=B box-binding protein; AltName: Full=Protein YB3
 gi|65271|emb|CAA42778.1| YB3 [Xenopus laevis]
          Length = 305

 Score = 71.9 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 39  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 96  -KGAEAANV 103


>gi|312138422|ref|YP_004005758.1| cold shock protein [Rhodococcus equi 103S]
 gi|311887761|emb|CBH47073.1| cold shock protein [Rhodococcus equi 103S]
          Length = 147

 Score = 71.9 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ +KG+GF++ E     G+DV++  SA+    +  L  GQ V +D      
Sbjct: 11 VPTGKVKWYDVEKGFGFLSQE----EGEDVYVRASALPGD-VDGLKAGQRVEFDMAAGRR 65

Query: 62 NGKYSAENLKLVPKS 76
               A  ++L+  +
Sbjct: 66 G--PQALKVQLLEPA 78


>gi|291333272|gb|ADD92980.1| cold shock protein [uncultured archaeon MedDCM-OCT-S04-C163]
          Length = 63

 Score = 71.9 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 10/73 (13%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI  E     GDD+F+H + V       + +G  V ++  +   
Sbjct: 1  MPQGTVKWFNQVKGFGFIEQE----GGDDLFVHITQVEGE----INDGDTVEFEIGEGPK 52

Query: 62 NGKYSAENLKLVP 74
              +A N+  V 
Sbjct: 53 G--PNAINVSKVE 63


>gi|195589720|ref|XP_002084597.1| GD12750 [Drosophila simulans]
 gi|194196606|gb|EDX10182.1| GD12750 [Drosophila simulans]
          Length = 352

 Score = 71.9 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G++KW+N   GYGFI    + E   DVF+H+SA+A       + ++ +G++V +D V  
Sbjct: 63  TGTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 119

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 120 E-KGNEAANV 128


>gi|148645032|gb|ABR01046.1| Csp [uncultured Geobacter sp.]
          Length = 56

 Score = 71.9 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +N  KG+GF+  E    +GDDVF H SA+   G  +L EG  V ++  +    G  +A  
Sbjct: 1  FNDGKGFGFLEQE----NGDDVFCHFSAITGDGFKSLAEGDKVKFEVTKG-PKGLQAANV 55


>gi|14270385|emb|CAC39432.1| cold-shock domain protein [Takifugu rubripes]
          Length = 263

 Score = 71.9 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 24 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 80

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 81 -KGAEAANV 88


>gi|322806010|emb|CBZ03577.1| cold shock protein CspD [Clostridium botulinum H04402 065]
          Length = 69

 Score = 71.9 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
          +H G++KW++ ++GYGFI    S  +G DV++H   +       +L EG+ V +D V+ +
Sbjct: 3  MHTGTVKWFDNERGYGFI----SGNNGKDVYVHSMQIKEKTHNKDLHEGEEVLFDIVEKE 58

Query: 61 ANGKYSAENLKLV 73
                A N++ +
Sbjct: 59 RG--PIAINVQKL 69


>gi|331243621|ref|XP_003334453.1| hypothetical protein PGTG_15882 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309313443|gb|EFP90034.1| hypothetical protein PGTG_15882 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 341

 Score = 71.9 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAG-LFNLTEGQLVTYDYVQN 59
             +G  K++N  KG+GFI  +   E G  +VF+H +++ S G   +L E   V Y  V  
Sbjct: 46  RRKGVCKFFNSQKGFGFINDDHPEELGNQEVFVHYTSIESKGNFRSLAE---VEY-VVAP 101

Query: 60  DANGKYSAEN 69
              G  + E 
Sbjct: 102 GQKGFQATEV 111


>gi|256089138|ref|XP_002580673.1| Y box binding protein [Schistosoma mansoni]
 gi|238666272|emb|CAZ36912.1| Y box binding protein, putative [Schistosoma mansoni]
          Length = 231

 Score = 71.9 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|199821|gb|AAA63390.1| Y box transcription factor [Mus musculus]
          Length = 322

 Score = 71.9 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 116 -KGAEAANV 123


>gi|332838569|ref|XP_003313542.1| PREDICTED: DNA-binding protein A isoform 1 [Pan troglodytes]
          Length = 305

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 95  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 152 -KGAEAANV 159


>gi|224586884|ref|NP_001138898.1| DNA-binding protein A isoform b [Homo sapiens]
 gi|16198465|gb|AAH15913.1| CSDA protein [Homo sapiens]
 gi|119616609|gb|EAW96203.1| cold shock domain protein A, isoform CRA_b [Homo sapiens]
 gi|119616610|gb|EAW96204.1| cold shock domain protein A, isoform CRA_b [Homo sapiens]
          Length = 303

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 93  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 150 -KGAEAANV 157


>gi|149478389|ref|XP_001515006.1| PREDICTED: similar to AMP deaminase 1 (Myoadenylate deaminase) (AMP
           deaminase isoform M) [Ornithorhynchus anatinus]
          Length = 316

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 53  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 109

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 110 -KGAEAANV 117


>gi|203999|gb|AAA41108.1| enhancer factor-1-alpha [Rattus norvegicus]
          Length = 322

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 116 -KGAEAANV 123


>gi|47214045|emb|CAG00703.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 134

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+LV +D ++ 
Sbjct: 9  QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGELVEFDVIEA 65

Query: 60 DANGKYSAEN 69
           A G  +A  
Sbjct: 66 -AKGSEAANV 74


>gi|255036777|ref|YP_003087398.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
          fermentans DSM 18053]
 gi|254949533|gb|ACT94233.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
          18053]
          Length = 63

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G +K++N  KG+GFI+PE   E GDD+F+H S +    +  + E   V+Y+ V+N  
Sbjct: 1  MNKGKVKFFNETKGFGFISPE---EGGDDIFVHVSGL----IDEIRENDSVSYE-VENGR 52

Query: 62 NGKYSAENLKLV 73
           G  +A N+ ++
Sbjct: 53 KG-LNAVNVSVL 63


>gi|24663131|ref|NP_524033.2| ypsilon schachtel [Drosophila melanogaster]
 gi|16769538|gb|AAL28988.1| LD37574p [Drosophila melanogaster]
 gi|23096153|gb|AAF49961.3| ypsilon schachtel [Drosophila melanogaster]
          Length = 352

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G++KW+N   GYGFI    + E   DVF+H+SA+A       + ++ +G++V +D V  
Sbjct: 63  TGTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 119

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 120 E-KGNEAANV 128


>gi|116283293|gb|AAH18393.1| YBX1 protein [Homo sapiens]
          Length = 267

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 118 -KGAEAANV 125


>gi|33875177|gb|AAH00064.1| YBX1 protein [Homo sapiens]
 gi|47939143|gb|AAH72014.1| YBX1 protein [Homo sapiens]
          Length = 266

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 118 -KGAEAANV 125


>gi|297665296|ref|XP_002811006.1| PREDICTED: LOW QUALITY PROTEIN: nuclease-sensitive element-binding
           protein 1-like [Pongo abelii]
          Length = 546

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 9/70 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVF-LHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI      ++ +DVF +H++A+        L ++ +G+ V +D V+ 
Sbjct: 282 GTVKWFNVRNGYGFI---NRNDTKEDVFVVHQTAIKKNXPRRYLRSVGDGETVEFDVVEG 338

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 339 E-KGAEAANV 347


>gi|55451|emb|CAA40847.1| Y box-binbing protein [Mus musculus]
          Length = 321

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 58  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 115 -KGAEAANV 122


>gi|2745892|gb|AAB94768.1| Y box transcription factor [Mus musculus]
          Length = 299

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 36  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 92

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 93  -KGAEAANV 100


>gi|295705597|ref|YP_003598672.1| cold shock protein [Bacillus megaterium DSM 319]
 gi|294803256|gb|ADF40322.1| cold shock protein [Bacillus megaterium DSM 319]
          Length = 70

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          H+G++K +N  KG GFITP        +VF H +A+      NL+EGQ V ++  +  A 
Sbjct: 4  HKGTVKSFNESKGSGFITP---KNGSKEVFFHSNAIDREEYKNLSEGQKVEFEIHKG-AK 59

Query: 63 GKYS 66
          G  +
Sbjct: 60 GPSA 63


>gi|226364441|ref|YP_002782223.1| cold shock protein [Rhodococcus opacus B4]
 gi|226242930|dbj|BAH53278.1| cold shock protein [Rhodococcus opacus B4]
          Length = 139

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ +KG+GF++ E     G+DV++  SA+   G+  L  GQ V +       
Sbjct: 4  VPTGKVKWYDVEKGFGFLSQE----EGEDVYVRSSAL-PEGVEGLKAGQRVEFGMAAGRR 58

Query: 62 NGKYSAENLKLVPKS 76
               A +LK++  +
Sbjct: 59 G--PQALSLKVLDPA 71


>gi|224048372|ref|XP_002196412.1| PREDICTED: lin-28 homolog B [Taeniopygia guttata]
          Length = 258

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 39  TGHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 98

Query: 60  DAN 62
              
Sbjct: 99  SKG 101


>gi|1402751|gb|AAC80242.1| major cold-shock protein [Enterococcus faecalis]
          Length = 45

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFI+ E     G DVF+H SA+   G   L EGQ VT+D   +D 
Sbjct: 1  EKGFGFISRE----DGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSDR 45


>gi|300770548|ref|ZP_07080427.1| competence factor transporter ComB [Sphingobacterium spiritivorum
          ATCC 33861]
 gi|300763024|gb|EFK59841.1| competence factor transporter ComB [Sphingobacterium spiritivorum
          ATCC 33861]
          Length = 63

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K++N  KG+GFITP    +   DVF+H + + +     + EG  VTY+  +   
Sbjct: 1  MNTGTVKFFNETKGFGFITP---QDGSADVFVHTTGLKNQ----VREGDEVTYEVERTPK 53

Query: 62 NGKYSAENLKL 72
              +A N++L
Sbjct: 54 G--LNAINVRL 62


>gi|195379482|ref|XP_002048507.1| GJ14010 [Drosophila virilis]
 gi|194155665|gb|EDW70849.1| GJ14010 [Drosophila virilis]
          Length = 340

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G+LV +D V  
Sbjct: 47  TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIG 103

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 104 E-KGNEAANV 112


>gi|300790296|ref|YP_003770587.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
 gi|299799810|gb|ADJ50185.1| cold shock protein CspA [Amycolatopsis mediterranei U32]
          Length = 128

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF+T +     G DV++ ++A+   G+  L  GQ + +    +  
Sbjct: 1  MPTGKVKWYDAEKGFGFVTQD----GGADVYIRKAAL-PQGVEGLKAGQRLEFGVA-DGR 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  +     L P  S
Sbjct: 55 RGPQALSVRLLDPPPS 70


>gi|30089118|emb|CAD27800.1| Y1 protein [Dugesia etrusca]
          Length = 280

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G +KW+N   GYGFI      ++ +D+F+H++A+          ++ +G+ V +D V+ 
Sbjct: 31 NGKVKWFNVKSGYGFI---NRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEG 87

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 88 E-KGLEAANV 96


>gi|293345049|ref|XP_002725925.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 1 [Rattus
          norvegicus]
 gi|293356922|ref|XP_001069344.2| PREDICTED: lin-28 homolog B isoform 1 [Rattus norvegicus]
          Length = 271

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+    EG+      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 29 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 88

Query: 60 DAN 62
             
Sbjct: 89 PKG 91


>gi|284009214|emb|CBA76294.1| cold shock protein [Arsenophonus nasoniae]
          Length = 72

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++ ++G+GFITP    +   +VF+H S + +     L EGQ V+Y   Q      
Sbjct: 7  GLVKWFDGNRGFGFITP---NDGSKEVFVHYSEIKNTHYQVLYEGQEVSYTPFQGMKG-- 61

Query: 65 YSAENLKLV 73
           +A N+ ++
Sbjct: 62 NTATNVVVL 70


>gi|3121922|sp|Q44317|CSPA_AERSA RecName: Full=Major cold-shock protein
 gi|1402733|gb|AAC80231.1| major cold-shock protein [Aeromonas salmonicida]
          Length = 46

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFI+P    +   DVF+H SA+ S     L EGQ V +   Q   
Sbjct: 1  EKGFGFISP---ADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQGQK 46


>gi|242008101|ref|XP_002424851.1| Y box binding protein, putative [Pediculus humanus corporis]
 gi|212508401|gb|EEB12113.1| Y box binding protein, putative [Pediculus humanus corporis]
          Length = 264

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI      ++ +DVF+H+SA+        + ++ +G++V +D V  
Sbjct: 25 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIVKNNPKKLVRSVGDGEVVEFDVVVG 81

Query: 60 DANGKYSAEN 69
             G  +A  
Sbjct: 82 G-KGNEAANV 90


>gi|195128621|ref|XP_002008760.1| GI13673 [Drosophila mojavensis]
 gi|193920369|gb|EDW19236.1| GI13673 [Drosophila mojavensis]
          Length = 335

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G++KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G+LV +D V  
Sbjct: 47  TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIG 103

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 104 E-KGNEAANV 112


>gi|78042603|ref|NP_001026942.1| protein lin-28 homolog B [Mus musculus]
 gi|71724928|gb|AAZ38894.1| LIN28B [Mus musculus]
 gi|111598825|gb|AAH89037.1| Lin-28 homolog B (C. elegans) [Mus musculus]
          Length = 271

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+    EG+      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 29 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 88

Query: 60 DAN 62
             
Sbjct: 89 PKG 91


>gi|195493731|ref|XP_002094541.1| GE20150 [Drosophila yakuba]
 gi|194180642|gb|EDW94253.1| GE20150 [Drosophila yakuba]
          Length = 353

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G++KW+N   GYGFI    + E   DVF+H+SA+A       + ++ +G++V +D V  
Sbjct: 64  TGTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 120

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 121 E-KGNEAANV 129


>gi|114608662|ref|XP_001143138.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 269

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 50  TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 109

Query: 60  DAN 62
              
Sbjct: 110 SKG 112


>gi|226475498|emb|CAX77802.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 217

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|224000840|ref|XP_002290092.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
          pseudonana CCMP1335]
 gi|220973514|gb|EED91844.1| cold-shock DNA-binding domain-containing protein [Thalassiosira
          pseudonana CCMP1335]
          Length = 72

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          ++  KG+GFI P+   +   DVF+H++++   G  +L E + V +  V+ D NG+  A +
Sbjct: 1  FDTAKGFGFIVPD---DGTKDVFVHQTSIKVEGFRSLAENEAVEFR-VETDTNGRLRALD 56

Query: 70 LK 71
          + 
Sbjct: 57 VT 58


>gi|197105102|ref|YP_002130479.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
           HLK1]
 gi|196478522|gb|ACG78050.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
           HLK1]
          Length = 202

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTE-SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +KW++  KGYGFI P+   +    DV LH +++ S+G  +  EG L+T D V+    
Sbjct: 28  TGRVKWFDAGKGYGFIVPDDPAQTDLKDVLLHVTSLRSSGREHCLEGSLITCDVVRR-PK 86

Query: 63  GKYSAENLKLVPKSS 77
           G   AE + L   ++
Sbjct: 87  GWQVAEVVDLDESTA 101



 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + +  +KW+N  KGYGF+  +       D+F+H   +  +G+ +L  G+ V   + +   
Sbjct: 133 LEQAKVKWFNRAKGYGFVIRDSQP---GDIFVHIETLRRSGMEDLQPGENVMVRFAEG-P 188

Query: 62  NGKYSAE 68
            G   AE
Sbjct: 189 KGLVVAE 195


>gi|119568818|gb|EAW48433.1| lin-28 homolog B (C. elegans), isoform CRA_a [Homo sapiens]
          Length = 257

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 38  TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97

Query: 60  DAN 62
              
Sbjct: 98  SKG 100


>gi|297291425|ref|XP_002803893.1| PREDICTED: protein lin-28 homolog B isoform 2 [Macaca mulatta]
          Length = 255

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 38  TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97

Query: 60  DAN 62
              
Sbjct: 98  SKG 100


>gi|255038433|ref|YP_003089054.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
          fermentans DSM 18053]
 gi|254951189|gb|ACT95889.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
          18053]
          Length = 63

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KGYGFI P   +    D+F+H S +       + E   V+Y+ V+N  
Sbjct: 1  MAEGTVKFFNESKGYGFIQP---SNGEKDIFVHVSGLQDD----IRENDKVSYE-VENGR 52

Query: 62 NGKYSAENLKLV 73
           G  +A N++++
Sbjct: 53 KG-LNAVNVRVI 63


>gi|226474418|emb|CAX71695.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 217

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|290543326|ref|NP_001166512.1| Y box binding protein 1 [Cavia porcellus]
 gi|194241598|gb|ACF35054.1| YB1 [Cavia porcellus]
          Length = 324

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 118 -KGAEAANV 125


>gi|50978844|ref|NP_001003127.1| Y-box protein ZONAB-A [Canis lupus familiaris]
 gi|8100510|gb|AAF72335.1|AF171061_1 Y-box protein ZONAB-A [Canis lupus familiaris]
          Length = 304

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H +A+        L ++ +G+ V +D V+ +
Sbjct: 95  GTVKWFNVRNGYGFI---NRNDTKEDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 152 -KGAEAANV 159


>gi|108804086|ref|YP_644023.1| cold-shock DNA-binding protein family protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765329|gb|ABG04211.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus DSM
           9941]
          Length = 197

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             +G +KW++P+KGYGF+        G+D+F+H S V      +L +G  V Y+  +N+ 
Sbjct: 133 REQGRVKWFDPEKGYGFLV----RPGGEDLFVHHSEVEGDA-SSLGQGVEVEYEVGRNER 187

Query: 62  NGKYSAENLKLV 73
               +A  ++++
Sbjct: 188 G--PNARRVRVL 197


>gi|62859889|ref|NP_001016677.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis]
 gi|89267862|emb|CAJ82694.1| Nuclease sensitive element binding protein 1 [Xenopus (Silurana)
           tropicalis]
 gi|89268717|emb|CAJ83277.1| Nuclease sensitive element binding protein 1 [Xenopus (Silurana)
           tropicalis]
 gi|213624244|gb|AAI70833.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis]
 gi|213625546|gb|AAI70835.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis]
          Length = 306

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 39  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 96  -KGAEAANV 103


>gi|297678780|ref|XP_002817240.1| PREDICTED: LOW QUALITY PROTEIN: protein lin-28 homolog B-like
           [Pongo abelii]
          Length = 269

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 50  TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 109

Query: 60  DAN 62
              
Sbjct: 110 SKG 112


>gi|148698506|gb|EDL30453.1| mCG4206 [Mus musculus]
          Length = 268

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 5  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 61

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 62 -KGAEAANV 69


>gi|38142418|dbj|BAC99313.2| brain Y-box binding protein 1 [Rattus norvegicus]
          Length = 322

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 59  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEEE 115

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 116 -KGAEAANV 123


>gi|259089373|ref|NP_001158512.1| Y-box binding protein [Oncorhynchus mykiss]
 gi|219665297|gb|ACL31579.1| Y-box binding protein [Oncorhynchus mykiss]
          Length = 301

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ DDVF+H++A+        L ++ +G++V +D V+ +
Sbjct: 42  GTVKWFNVRNGYGFI---NRNDTKDDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 98

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 99  -KGAEAANV 106


>gi|291516236|emb|CBK69852.1| Cold shock proteins [Bifidobacterium longum subsp. longum F8]
          Length = 79

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57
          + +G++K++   KG GFI P+   + G+DVF+H + +   G       L EG  V Y   
Sbjct: 1  MAQGTVKFFLAKKGVGFIQPD---DGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPA 57

Query: 58 QNDANGKYSAENLKLVPKSS 77
           +   G  + + +KL    +
Sbjct: 58 SSG-KGTQAKDVVKLSSGEA 76


>gi|238789311|ref|ZP_04633098.1| Cold shock-like protein [Yersinia frederiksenii ATCC 33641]
 gi|238792392|ref|ZP_04636026.1| Cold shock-like protein [Yersinia intermedia ATCC 29909]
 gi|238722643|gb|EEQ14296.1| Cold shock-like protein [Yersinia frederiksenii ATCC 33641]
 gi|238728318|gb|EEQ19838.1| Cold shock-like protein [Yersinia intermedia ATCC 29909]
          Length = 65

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW+N  +GYGFI+P    +   DV++ ++A+A+    +L+EGQ V +   ++  +G
Sbjct: 1  MGRVKWFNQSEGYGFISPH---DGSLDVYVSKTAIANTKNKSLSEGQDVEFSTYRS-IHG 56

Query: 64 KYSAENL 70
            +A+ +
Sbjct: 57 PSAADVI 63


>gi|224282740|ref|ZP_03646062.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171]
 gi|310287199|ref|YP_003938457.1| Cold shock protein [Bifidobacterium bifidum S17]
 gi|311064061|ref|YP_003970786.1| cold shock protein CspB [Bifidobacterium bifidum PRL2010]
 gi|313139899|ref|ZP_07802092.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171]
 gi|309251135|gb|ADO52883.1| Cold shock protein [Bifidobacterium bifidum S17]
 gi|310866380|gb|ADP35749.1| CspB Cold shock protein [Bifidobacterium bifidum PRL2010]
 gi|313132409|gb|EFR50026.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171]
          Length = 129

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++W++  KG+GFIT     + G+DVFL  +A+   G+  L +G  V +  + +  
Sbjct: 1  MPSGRVRWFDAKKGFGFIT----NDEGEDVFLPAAAL-PDGVTTLRKGARVEFSVI-DGR 54

Query: 62 NGKYS 66
           G  +
Sbjct: 55 KGPQA 59


>gi|61837945|ref|XP_606503.1| PREDICTED: cold shock domain protein A short-like [Bos taurus]
 gi|297493193|ref|XP_002700192.1| PREDICTED: cold shock domain protein A short-like [Bos taurus]
 gi|296470652|gb|DAA12767.1| cold shock domain protein A short-like [Bos taurus]
          Length = 323

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG---LF-NLTEGQLVTYDYVQND 60
           G++ W+   KGYGFI+ + + E   DVF+H +A+          ++ +G++V +D VQ +
Sbjct: 70  GTVVWFKEKKGYGFISRQDTQE---DVFVHHTAITGKNPCTYRGSVDDGEMVEFDVVQGE 126

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 127 W-GTEAANV 134


>gi|114608664|ref|XP_001143220.1| PREDICTED: protein lin-28 homolog B isoform 2 [Pan troglodytes]
          Length = 250

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90

Query: 60 DAN 62
             
Sbjct: 91 SKG 93


>gi|465508|sp|Q06066|YBOX1_CHICK RecName: Full=Nuclease-sensitive element-binding protein 1;
           AltName: Full=Y-box transcription factor; AltName:
           Full=Y-box-binding protein 1; Short=YB-1
 gi|289797|gb|AAA02573.1| YB-1 protein [Gallus gallus]
          Length = 321

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 58  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 115 -KGAEAANV 122


>gi|47214418|emb|CAG00259.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 179

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GFI+         +   DVF+H+S +   G  +L EG+ + + + ++ 
Sbjct: 6  GVCKWFNMRMGFGFISMSSRDGAPLDQNLDVFVHQSKLHMEGFRSLREGEALEFSFKKSS 65

Query: 61 AN 62
            
Sbjct: 66 KG 67


>gi|51972214|ref|NP_001004317.1| protein lin-28 homolog B [Homo sapiens]
 gi|74758701|sp|Q6ZN17|LN28B_HUMAN RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
 gi|47077279|dbj|BAD18558.1| unnamed protein product [Homo sapiens]
 gi|71724934|gb|AAZ38897.1| LIN28B [Homo sapiens]
 gi|119568819|gb|EAW48434.1| lin-28 homolog B (C. elegans), isoform CRA_b [Homo sapiens]
 gi|123239097|emb|CAI21661.2| lin-28 homolog B (C. elegans) [Homo sapiens]
 gi|123240273|emb|CAI20969.2| lin-28 homolog B (C. elegans) [Homo sapiens]
 gi|187953595|gb|AAI37527.1| Lin-28 homolog B (C. elegans) [Homo sapiens]
 gi|223459806|gb|AAI37528.1| Lin-28 homolog B (C. elegans) [Homo sapiens]
          Length = 250

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90

Query: 60 DAN 62
             
Sbjct: 91 SKG 93


>gi|149640530|ref|XP_001506004.1| PREDICTED: similar to LIN28B [Ornithorhynchus anatinus]
          Length = 274

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS  +   DVF+H+S +   G  +L EG+ + + + ++
Sbjct: 51  TGHCKWFNVRMGFGFISMISREGSPLDPAVDVFVHQSKLHMEGFRSLKEGEPLEFTFKKS 110

Query: 60  DAN 62
              
Sbjct: 111 SKG 113


>gi|109072184|ref|XP_001086990.1| PREDICTED: protein lin-28 homolog B isoform 1 [Macaca mulatta]
          Length = 248

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90

Query: 60 DAN 62
             
Sbjct: 91 SKG 93


>gi|2502064|gb|AAB80761.1| Y-box binding protein A [Columba livia]
          Length = 278

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 70  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQAAIKKNNPRKYLRSVGDGETVEFDVVEGE 126

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 127 -KGAEAANV 134


>gi|170761472|ref|YP_001787094.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169408461|gb|ACA56872.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 69

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
          +H G++KW++ ++GYGFI    S  +G DV++H   +       +L EG+ V +D V+ +
Sbjct: 3  MHTGTVKWFDNERGYGFI----SGNNGKDVYVHSMQIKEKTHNKDLHEGEEVLFDIVEKE 58

Query: 61 ANGKYSAENLKLV 73
                A N++ +
Sbjct: 59 KG--PIAINVQKL 69


>gi|332218575|ref|XP_003258430.1| PREDICTED: protein lin-28 homolog B-like [Nomascus leucogenys]
          Length = 250

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90

Query: 60 DAN 62
             
Sbjct: 91 SKG 93


>gi|296210997|ref|XP_002752196.1| PREDICTED: hypothetical protein LOC100396927 [Callithrix jacchus]
          Length = 302

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 92  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 148

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 149 -KGAEAANV 156


>gi|294884847|gb|ADF47434.1| cold shock domain-containing protein A [Dugesia japonica]
          Length = 190

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQND 60
           G +KWYN  KGYGFI  +   E   DVF+H+SA+         +L E + V +D V+  
Sbjct: 16 TGKVKWYNVKKGYGFIHRDDVDE---DVFVHQSAISRCQPGKQKSLGEDEDVLFDVVKGS 72

Query: 61 AN 62
            
Sbjct: 73 KG 74


>gi|226475490|emb|CAX77798.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 217

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|2073111|dbj|BAA19850.1| Y box protein 2 [Carassius auratus]
          Length = 297

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D V+ 
Sbjct: 22 EGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEA 78

Query: 60 DANGKYSAEN 69
           A G  +A  
Sbjct: 79 -AKGSEAANV 87


>gi|1402739|gb|AAC80233.1| major cold-shock protein [Bacillus subtilis]
          Length = 45

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ + 
Sbjct: 1  EKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNR 45


>gi|226475506|emb|CAX77806.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 217

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|226474412|emb|CAX71692.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226474414|emb|CAX71693.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226474416|emb|CAX71694.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226474420|emb|CAX71696.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226474426|emb|CAX71699.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226475492|emb|CAX77799.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226475494|emb|CAX77800.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226475496|emb|CAX77801.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226475500|emb|CAX77803.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226475508|emb|CAX77807.1| putative cold shock domain protein A [Schistosoma japonicum]
 gi|226475510|emb|CAX77808.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 217

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|14150689|gb|AAK54601.1|AF373220_1 Y-box DNA-binding protein [Schistosoma japonicum]
 gi|14039811|gb|AAK53394.1| Y-box binding protein [Schistosoma japonicum]
          Length = 202

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|3821925|gb|AAC69704.1| major cold shock protein [Streptococcus thermophilus]
          Length = 50

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          KG+GFIT    +E G D+F H S++ S G  +L E Q V +D V+    G  +A 
Sbjct: 1  KGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFD-VEVGQRGPQAAN 50


>gi|148225376|ref|NP_001087255.1| nuclease-sensitive element-binding protein 1 [Ovis aries]
 gi|140326474|gb|ABO86713.1| nuclease sensitive element binding protein 1 [Ovis aries]
          Length = 288

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 25 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGE 81

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 82 -KGAEAANV 89


>gi|82242626|sp|Q8AVK2|LN28B_XENLA RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
 gi|27503403|gb|AAH42225.1| LOC373796 protein [Xenopus laevis]
          Length = 252

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GFI+    EGS  E+  DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDGFRSLKEGEPVEFTFKKSS 94

Query: 61 AN 62
            
Sbjct: 95 KG 96


>gi|241813115|ref|XP_002414626.1| Y1 protein, putative [Ixodes scapularis]
 gi|215508837|gb|EEC18291.1| Y1 protein, putative [Ixodes scapularis]
          Length = 209

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV--Q 58
          G+++W+N   GYGFI    + E   D+F+H++A+           ++EG+ V +D V  +
Sbjct: 27 GTVQWFNVKNGYGFINRNDTRE---DIFVHQTAITRNHPQKLTRTVSEGETVQFDVVVDE 83

Query: 59 NDANGKY 65
            A G+ 
Sbjct: 84 ERARGRQ 90


>gi|296198877|ref|XP_002746914.1| PREDICTED: protein lin-28 homolog B-like isoform 2 [Callithrix
           jacchus]
          Length = 257

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 38  TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97

Query: 60  DAN 62
              
Sbjct: 98  SKG 100


>gi|226475502|emb|CAX77804.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 217

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|194131839|gb|ACF33225.1| Y-box protein Lyb2 [Lethenteron japonicum]
          Length = 181

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 65  GTVKWFNVKNGYGFI---NRNDTKEDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 121

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 122 -KGAEAANV 129


>gi|197632617|gb|ACH71032.1| Y-box binding protein-1 [Salmo salar]
 gi|209732334|gb|ACI67036.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|221222302|gb|ACM09812.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|223646798|gb|ACN10157.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|223649012|gb|ACN11264.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|223672655|gb|ACN12509.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|303663491|gb|ADM16105.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
          Length = 300

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPKKYLRSVGDGETVEFDVVEGE 97

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 98  -KGAEAANV 105


>gi|193212293|ref|YP_001998246.1| cold-shock DNA-binding domain-containing protein [Chlorobaculum
          parvum NCIB 8327]
 gi|193085770|gb|ACF11046.1| cold-shock DNA-binding domain protein [Chlorobaculum parvum NCIB
          8327]
          Length = 88

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
          + +  +KW++  KGYGFI    + + G+D+F+H SA+ S      L +   V Y+  +  
Sbjct: 1  MAKSKVKWFDGKKGYGFI---LNPDGGEDIFVHFSAIISDQSFKVLNQDSEVEYELDKTQ 57

Query: 61 AN 62
            
Sbjct: 58 KG 59


>gi|161528035|ref|YP_001581861.1| cold-shock DNA-binding domain-containing protein [Nitrosopumilus
          maritimus SCM1]
 gi|160339336|gb|ABX12423.1| cold-shock DNA-binding domain protein [Nitrosopumilus maritimus
          SCM1]
          Length = 63

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 10/70 (14%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++KW+N  KG+GFI  E     GDD+F+H++ V   G   + EG  V ++  +   
Sbjct: 1  MEQGTVKWFNRTKGFGFIERE----GGDDLFVHKTDV--DGF--INEGDKVEFEVGEGRK 52

Query: 62 NGKYSAENLK 71
              +A+ +K
Sbjct: 53 G--PAAQKVK 60


>gi|302532749|ref|ZP_07285091.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
 gi|302441644|gb|EFL13460.1| cold shock domain-containing protein CspD [Streptomyces sp. C]
          Length = 71

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFN 45
          +  G++KW+N +KG+GFI+ +   + G DVF+H S +   G   +
Sbjct: 1  MATGTVKWFNSEKGFGFISQD---DGGPDVFVHFSPIPGDGAFKS 42


>gi|293345051|ref|XP_002725926.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 2 [Rattus
          norvegicus]
 gi|293356926|ref|XP_002729027.1| PREDICTED: lin-28 homolog B isoform 3 [Rattus norvegicus]
          Length = 247

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+    EG+      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 29 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 88

Query: 60 DAN 62
             
Sbjct: 89 PKG 91


>gi|1402737|gb|AAC80232.1| major cold-shock protein [Bacillus cereus]
          Length = 45

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFI  E     G+DVF+H SA+   G   L EGQ VT++  Q + 
Sbjct: 1  EKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNR 45


>gi|226475504|emb|CAX77805.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 203

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|116248187|sp|Q45KJ6|LN28B_MOUSE RecName: Full=Protein lin-28 homolog B; Short=Lin-28B
          Length = 247

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+    EG+      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 29 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 88

Query: 60 DAN 62
             
Sbjct: 89 PKG 91


>gi|27503841|gb|AAH42217.1| Nsep1 protein [Xenopus laevis]
          Length = 304

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 39  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 96  -KGAEAANV 103


>gi|296535726|ref|ZP_06897893.1| cold-shock DNA-binding domain protein [Roseomonas cervicalis ATCC
           49957]
 gi|296263939|gb|EFH10397.1| cold-shock DNA-binding domain protein [Roseomonas cervicalis ATCC
           49957]
          Length = 270

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++KW++  +G+GF+TP+   + G DVFLH S +  AG  ++ +G+ ++ +  Q      
Sbjct: 208 GTVKWFDQVRGFGFVTPD---DGGADVFLHSSVLQRAGKQDVQQGEKLSLEVRQGQRG-- 262

Query: 65  YSAENLK 71
             A  LK
Sbjct: 263 RQAVILK 269



 Score = 54.2 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          +KWYN  KG+GF+        G DVF H SA+  AG+     G  +  +   +    +
Sbjct: 18 VKWYNGRKGFGFV----LGPDGQDVFFHASALTEAGIEPPETGDKLVCEIGTDRQGRR 71


>gi|3831560|gb|AAC70001.1| major cold shock protein [Bifidobacterium animalis]
          Length = 50

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          KG+GFIT     E G DVF+H SA+   G  +L +GQ V+Y+  Q+D  G  +A 
Sbjct: 1  KGFGFIT----GEDGQDVFVHFSAINGEGYKSLDKGQAVSYNVKQSD-RGPQAAN 50


>gi|226475488|emb|CAX77797.1| putative cold shock domain protein A [Schistosoma japonicum]
          Length = 214

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|297521145|ref|ZP_06939531.1| major cold shock protein [Escherichia coli OP50]
          Length = 51

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
          FITP+   +   DVF+H SA+ + G  +L EGQ V++   ++ A G  +A N+ 
Sbjct: 1  FITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKGP-AAGNVT 49


>gi|149521716|ref|XP_001517644.1| PREDICTED: similar to LD37574p, partial [Ornithorhynchus anatinus]
          Length = 281

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G +KW+N   GYGFI      E   DVF+H+SA+          ++ EG++V +D V   
Sbjct: 38  GVVKWFNVRHGYGFICRIDMQE---DVFIHQSAIVRNNPRKCQRSVGEGEVVQFDLV-AG 93

Query: 61  ANGKYSAENLKL 72
           A G  +A    L
Sbjct: 94  AKGTEAANVTGL 105


>gi|256089122|ref|XP_002580665.1| cold shock domain protein A [Schistosoma mansoni]
 gi|238666264|emb|CAZ36904.1| cold shock domain protein A, putative [Schistosoma mansoni]
          Length = 175

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          RG +KW+N   GYGFIT    +++  D+F+H++A++         +L E + V +  V+ 
Sbjct: 19 RGVVKWFNVKAGYGFITR---SDTSSDIFVHQTAISRNNPGKMQRSLQENEEVEFFVVEG 75

Query: 60 DAN 62
          D  
Sbjct: 76 DKG 78


>gi|301763343|ref|XP_002917091.1| PREDICTED: protein lin-28 homolog B-like [Ailuropoda melanoleuca]
          Length = 257

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 38  TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97

Query: 60  DAN 62
              
Sbjct: 98  SKG 100


>gi|47123238|gb|AAH70000.1| Y box binding protein 1 [Danio rerio]
          Length = 310

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +  V+ +
Sbjct: 41  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFAVVEGE 97

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 98  -KGAEAANV 105


>gi|1402741|gb|AAC80234.1| major cold-shock protein [Bacillus subtilis]
          Length = 45

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFI  EG     DDVF+H SA+   G   L EGQ V+++ V+ + 
Sbjct: 1  EKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQSVSFEIVEGNR 45


>gi|327335065|gb|EGE76776.1| cold-shock domain protein [Propionibacterium acnes HL097PA1]
          Length = 135

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +++Y+  KG+GF+T +     G DV+++ SA+  AG+  L  GQ V +  V+   
Sbjct: 9  MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 63

Query: 62 NGKYSAENLKLVPKSSN 78
               A +L+++   ++
Sbjct: 64 G--EQALSLQIIETPAS 78


>gi|296198875|ref|XP_002746913.1| PREDICTED: protein lin-28 homolog B-like isoform 1 [Callithrix
          jacchus]
          Length = 250

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
           G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90

Query: 60 DAN 62
             
Sbjct: 91 SKG 93


>gi|213983151|ref|NP_001135490.1| lin-28 homolog B [Xenopus (Silurana) tropicalis]
 gi|195539937|gb|AAI67886.1| Unknown (protein for MGC:135309) [Xenopus (Silurana) tropicalis]
          Length = 253

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GFI+    EGS  E+  DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSS 94

Query: 61 AN 62
            
Sbjct: 95 KG 96


>gi|3121931|sp|Q53984|CSPA_STRDY RecName: Full=Major cold shock protein
 gi|1402775|gb|AAC80257.1| major cold-shock protein [Streptococcus dysgalactiae]
          Length = 45

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFI+    TE+G DVF H SA+ + G   L EGQ V +D  +   
Sbjct: 1  EKGFGFIS----TENGQDVFAHFSAIQTNGFKTLEEGQKVEFDVEEGQR 45


>gi|313802611|gb|EFS43833.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL110PA2]
          Length = 135

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +++Y+  KG+GF+T +     G DV+++ SA+  AG+  L  GQ V +  V+   
Sbjct: 9  MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 63

Query: 62 NGKYSAENLKLVPKSSN 78
               A +L+++   ++
Sbjct: 64 G--EQALSLQIIETPAS 78


>gi|332292095|ref|YP_004430704.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332170181|gb|AEE19436.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 63

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KGYGFIT +   ++G D+F+H + +       + EG  V Y   +    G
Sbjct: 2  EGTVKFFNESKGYGFITND---DTGKDIFVHVTGLNGE---TINEGDKVEY-VEEEGRKG 54

Query: 64 KYSAEN 69
            +A+ 
Sbjct: 55 LTAAQV 60


>gi|313765415|gb|EFS36779.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL013PA1]
 gi|313772599|gb|EFS38565.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL074PA1]
 gi|313792938|gb|EFS41005.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL110PA1]
 gi|313806623|gb|EFS45130.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL087PA2]
 gi|313810820|gb|EFS48534.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL083PA1]
 gi|313814335|gb|EFS52049.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL025PA1]
 gi|313815182|gb|EFS52896.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL059PA1]
 gi|313817166|gb|EFS54880.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL046PA2]
 gi|313821769|gb|EFS59483.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL036PA1]
 gi|313824339|gb|EFS62053.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL036PA2]
 gi|313826698|gb|EFS64412.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL063PA1]
 gi|313828486|gb|EFS66200.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL063PA2]
 gi|313831939|gb|EFS69653.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL007PA1]
 gi|313834520|gb|EFS72234.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL056PA1]
 gi|313840249|gb|EFS77963.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL086PA1]
 gi|314915942|gb|EFS79773.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL005PA4]
 gi|314916971|gb|EFS80802.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL050PA1]
 gi|314921491|gb|EFS85322.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL050PA3]
 gi|314926877|gb|EFS90708.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL036PA3]
 gi|314931185|gb|EFS95016.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL067PA1]
 gi|314954756|gb|EFS99162.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL027PA1]
 gi|314958923|gb|EFT03025.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL002PA1]
 gi|314961218|gb|EFT05319.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL002PA2]
 gi|314964355|gb|EFT08455.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL082PA1]
 gi|314969454|gb|EFT13552.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL037PA1]
 gi|314974521|gb|EFT18616.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL053PA1]
 gi|314977286|gb|EFT21381.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL045PA1]
 gi|314980557|gb|EFT24651.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL072PA2]
 gi|314985613|gb|EFT29705.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL005PA1]
 gi|314987570|gb|EFT31661.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL005PA2]
 gi|314988965|gb|EFT33056.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL005PA3]
 gi|315078631|gb|EFT50662.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL053PA2]
 gi|315081909|gb|EFT53885.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL078PA1]
 gi|315082596|gb|EFT54572.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL027PA2]
 gi|315086307|gb|EFT58283.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL002PA3]
 gi|315087557|gb|EFT59533.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL072PA1]
 gi|315097592|gb|EFT69568.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL038PA1]
 gi|315099808|gb|EFT71784.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL059PA2]
 gi|315101884|gb|EFT73860.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL046PA1]
 gi|315106608|gb|EFT78584.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL030PA1]
 gi|315110397|gb|EFT82373.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL030PA2]
 gi|327331557|gb|EGE73296.1| cold-shock domain protein [Propionibacterium acnes HL096PA2]
 gi|327333540|gb|EGE75260.1| cold-shock domain protein [Propionibacterium acnes HL096PA3]
 gi|327445435|gb|EGE92089.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL013PA2]
 gi|327447049|gb|EGE93703.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL043PA1]
 gi|327449915|gb|EGE96569.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL043PA2]
 gi|327454759|gb|EGF01414.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL087PA3]
 gi|327455614|gb|EGF02269.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL083PA2]
 gi|327456893|gb|EGF03548.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL092PA1]
 gi|328755815|gb|EGF69431.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL087PA1]
 gi|328756595|gb|EGF70211.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL025PA2]
 gi|328758679|gb|EGF72295.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL020PA1]
 gi|328761686|gb|EGF75201.1| cold-shock domain protein [Propionibacterium acnes HL099PA1]
          Length = 135

 Score = 70.8 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +++Y+  KG+GF+T +     G DV+++ SA+  AG+  L  GQ V +  V+   
Sbjct: 9  MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 63

Query: 62 NGKYSAENLKLVPKSSN 78
               A +L+++   ++
Sbjct: 64 G--EQALSLQIIETPAS 78


>gi|302392639|ref|YP_003828459.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
 gi|302204716|gb|ADL13394.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
          Length = 66

 Score = 70.8 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46
          +  G++KW++ +KGYGFI         DDVF+H SA+   G  +L
Sbjct: 1  MATGTVKWFDSNKGYGFIERPEE----DDVFVHFSAIQDDGFKDL 41


>gi|194216294|ref|XP_001503975.2| PREDICTED: similar to lin-28 homolog B (C. elegans) isoform 2
           [Equus caballus]
          Length = 257

 Score = 70.8 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EG       DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 38  TGHCKWFNVRMGFGFISMISREGRPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97

Query: 60  DAN 62
              
Sbjct: 98  SKG 100


>gi|1353778|gb|AAB01787.1| Y-Box binding protein [Columba livia]
          Length = 287

 Score = 70.8 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 24 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 80

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 81 -KGAEAANV 88


>gi|311114545|ref|YP_003985766.1| cold-shock domain family protein [Gardnerella vaginalis ATCC
          14019]
 gi|310946039|gb|ADP38743.1| cold-shock domain family protein [Gardnerella vaginalis ATCC
          14019]
          Length = 129

 Score = 70.8 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++WY+  KGYGFI      E G DVFL  SA+    +  L +G  V +  V+   
Sbjct: 1  MPNGRVRWYDSKKGYGFIC----DEDGKDVFLPSSAL-PESVKELRKGTRVEFSVVEG-R 54

Query: 62 NGKYS 66
           G  +
Sbjct: 55 KGPQA 59


>gi|256089136|ref|XP_002580672.1| Y box binding protein [Schistosoma mansoni]
 gi|1477478|gb|AAC47760.1| Y-box binding protein [Schistosoma mansoni]
 gi|1477484|gb|AAC47761.1| Y-box binding protein homolog [Schistosoma mansoni]
 gi|238666271|emb|CAZ36911.1| Y box binding protein, putative [Schistosoma mansoni]
          Length = 217

 Score = 70.8 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|56755411|gb|AAW25885.1| SJCHGC05173 protein [Schistosoma japonicum]
 gi|226470954|emb|CAX76910.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470956|emb|CAX76911.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470958|emb|CAX76912.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470960|emb|CAX76913.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470962|emb|CAX76914.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470964|emb|CAX76915.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470966|emb|CAX76916.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226470968|emb|CAX76917.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226473230|emb|CAX71301.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226473232|emb|CAX71302.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226473234|emb|CAX71303.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226473236|emb|CAX71304.1| putative DNA-binding protein [Schistosoma japonicum]
 gi|226473238|emb|CAX71305.1| putative DNA-binding protein [Schistosoma japonicum]
          Length = 175

 Score = 70.8 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          RG +KW+N   GYGFIT    +++  D+F+H++A++         +L E + V +  V+ 
Sbjct: 19 RGVVKWFNVKAGYGFITR---SDTSSDIFVHQTAISRNNPGKMQRSLQENEEVEFFVVEG 75

Query: 60 DAN 62
          D  
Sbjct: 76 DKG 78


>gi|213512942|ref|NP_001133216.1| Y-box binding protein-2 [Salmo salar]
 gi|197632619|gb|ACH71033.1| Y-box binding protein-2 [Salmo salar]
          Length = 301

 Score = 70.8 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G++V +D V+ +
Sbjct: 42  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 98

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 99  -KGAEAANV 106


>gi|86132446|ref|ZP_01051040.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
 gi|85817007|gb|EAQ38191.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
          Length = 64

 Score = 70.8 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KGYGFIT +   E+G D+F+H + +       + EG  V Y   +    G
Sbjct: 2  EGTVKFFNESKGYGFITND---ETGKDIFVHVTGLNGE---TINEGDKVEY-VEEEGRKG 54

Query: 64 KYSAEN 69
            +A+ 
Sbjct: 55 LTAAQV 60


>gi|326932610|ref|XP_003212408.1| PREDICTED: nuclease-sensitive element-binding protein 1-like,
          partial [Meleagris gallopavo]
          Length = 134

 Score = 70.8 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 6  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 62

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 63 -KGAEAANV 70


>gi|119025588|ref|YP_909433.1| cold shock protein [Bifidobacterium adolescentis ATCC 15703]
 gi|154487048|ref|ZP_02028455.1| hypothetical protein BIFADO_00886 [Bifidobacterium adolescentis
          L2-32]
 gi|118765172|dbj|BAF39351.1| cold shock protein [Bifidobacterium adolescentis ATCC 15703]
 gi|154084911|gb|EDN83956.1| hypothetical protein BIFADO_00886 [Bifidobacterium adolescentis
          L2-32]
          Length = 130

 Score = 70.8 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++W++ +KGYGFI    + ES DDVFL  +A+   G+  L +G  V Y  + +  
Sbjct: 1  MPSGRVRWFDANKGYGFIQ---TGESTDDVFLPAAAL-PEGVKTLRKGAKVEYSVI-DGR 55

Query: 62 NGKYS 66
           G  +
Sbjct: 56 RGPQA 60


>gi|41055233|ref|NP_957385.1| protein lin-28 homolog A [Danio rerio]
 gi|82241857|sp|Q803L0|LN28A_DANRE RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
 gi|27882510|gb|AAH44433.1| Lin-28 homolog (C. elegans) [Danio rerio]
 gi|94732353|emb|CAK04625.1| novel protein (zgc:55584) [Danio rerio]
          Length = 202

 Score = 70.8 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF++    EG       DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 36 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSS 95

Query: 61 AN 62
            
Sbjct: 96 KG 97


>gi|225575513|ref|ZP_03784123.1| hypothetical protein RUMHYD_03605 [Blautia hydrogenotrophica DSM
          10507]
 gi|225037263|gb|EEG47509.1| hypothetical protein RUMHYD_03605 [Blautia hydrogenotrophica DSM
          10507]
          Length = 77

 Score = 70.8 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G++KW++P KGYGFI  +    +G + F+H+S +   G  +L  G+ V+Y     + 
Sbjct: 12 VEHGTVKWFDPVKGYGFIAGD----NGKETFVHQSDILMRGFRHLETGERVSYRVKATEK 67

Query: 62 NGK 64
            K
Sbjct: 68 GDK 70


>gi|1402771|gb|AAC80254.1| major cold-shock protein [Staphylococcus aureus RN4220]
 gi|1402781|gb|AAC80256.1| major cold-shock protein [Staphylococcus intermedius]
          Length = 45

 Score = 70.8 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  EKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDR 45


>gi|114615287|ref|XP_510011.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan
           troglodytes]
          Length = 379

 Score = 70.8 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT---EGQLVTYDYVQNDA 61
           G++KW+N   GYGFI      ++ +DVF+ ++A+ +     L    +G+ V +D V+ + 
Sbjct: 117 GTVKWFNVRNGYGFI---NRNDTKEDVFVPQTAIKNNPRKYLRSVGDGETVEFDVVEGEK 173

Query: 62  NGKYSAENLK 71
           +    A N+ 
Sbjct: 174 D--AEAANVT 181


>gi|157278086|ref|NP_001098143.1| Y-box binding protein [Oryzias latipes]
 gi|27348122|dbj|BAC45236.1| Y-box binding protein [Oryzias latipes]
          Length = 306

 Score = 70.8 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 43  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 99

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 100 -KGAEAANV 107


>gi|332025391|gb|EGI65558.1| Y-box factor-like protein [Acromyrmex echinatior]
          Length = 362

 Score = 70.8 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI      ++ +DVF+H+SA+        + ++ +G++V +D V  
Sbjct: 25 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVIG 81

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 82 E-KGHEAANV 90


>gi|158295359|ref|XP_001237771.2| AGAP006108-PA [Anopheles gambiae str. PEST]
 gi|157015999|gb|EAU76557.2| AGAP006108-PA [Anopheles gambiae str. PEST]
          Length = 402

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G +KW+N   GYGFI    + E   DVF+H+SA+A       + ++ +G+ V +D V  
Sbjct: 89  TGVVKWFNVKSGYGFINRGDTQE---DVFVHQSAIARNNPKKAVRSVGDGEQVEFDVVIG 145

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 146 E-KGNEAANV 154


>gi|295398664|ref|ZP_06808688.1| cold shock protein CspA [Aerococcus viridans ATCC 11563]
 gi|294973099|gb|EFG48902.1| cold shock protein CspA [Aerococcus viridans ATCC 11563]
          Length = 70

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M + G +K +N  +G+GFI      E G D+F+H SA+      +LT GQ V ++  +  
Sbjct: 1  MTYYGIVKTFNEKEGFGFIELPDFPEEG-DIFVHFSALLHLEQSSLTVGQKVHFEIAEGK 59

Query: 61 ANGKYSAENLKL 72
                A N+ L
Sbjct: 60 RG--PQAVNISL 69


>gi|327482221|gb|AEA85531.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          stutzeri DSM 4166]
          Length = 235

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  RG++K +N DKG+GFI PE   + G+++F+H SAV       L  G  V +     D
Sbjct: 1  MERRGTLKSWNDDKGFGFIRPE---QGGEELFVHISAVHGE-RRPLV-GDRVLF-VAGRD 54

Query: 61 ANGKYSAENLKL 72
          A G+  AE+++L
Sbjct: 55 AQGRLRAEHVRL 66


>gi|227539041|ref|ZP_03969090.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241097|gb|EEI91112.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 63

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K++N  KG+GFITP    +   D+F+H + + +     + EG  VTY+  +   
Sbjct: 1  MNTGTVKFFNETKGFGFITP---QDGSGDIFVHTTGLKNQ----VREGDEVTYEVERTPK 53

Query: 62 NGKYSAENLKL 72
              +A N++L
Sbjct: 54 G--LNAINVRL 62


>gi|294787495|ref|ZP_06752748.1| cold-shock domain family protein [Parascardovia denticolens
          F0305]
 gi|315226929|ref|ZP_07868717.1| cold-shock domain family protein [Parascardovia denticolens DSM
          10105]
 gi|294484851|gb|EFG32486.1| cold-shock domain family protein [Parascardovia denticolens
          F0305]
 gi|315121061|gb|EFT84193.1| cold-shock domain family protein [Parascardovia denticolens DSM
          10105]
          Length = 129

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G I+W++  KGYGFIT    ++ G+DVF+ ++A+  AG+  L +G  V +  V +  
Sbjct: 1  MPAGEIRWFDAKKGYGFIT----SDDGEDVFMPKTAL-PAGVTTLRKGAKVEFSRV-DSR 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  + + + L P  S
Sbjct: 55 RGPQAMDVVVLGPTPS 70


>gi|305665589|ref|YP_003861876.1| hypothetical protein FB2170_04800 [Maribacter sp. HTCC2170]
 gi|88710345|gb|EAR02577.1| hypothetical protein FB2170_04800 [Maribacter sp. HTCC2170]
          Length = 64

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 7/66 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KGYGFIT +   E+G D+F+H +A+       L EG  V Y+  +    G
Sbjct: 2  TGTVKFFNESKGYGFITND---ETGSDIFVHATALNGV---ELKEGDKVEYE-EEEGRKG 54

Query: 64 KYSAEN 69
            +A+ 
Sbjct: 55 MVAAQV 60


>gi|312377865|gb|EFR24595.1| hypothetical protein AND_10704 [Anopheles darlingi]
          Length = 428

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G +KW+N   GYGFI      ++ +DVF+H+SA+A       + ++ +G+ V +D V  
Sbjct: 92  TGVVKWFNVKSGYGFI---NRGDTHEDVFVHQSAIARNNPKKAVRSVGDGEEVEFDVVIG 148

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 149 E-KGNEAANV 157


>gi|50841960|ref|YP_055187.1| cold shock protein [Propionibacterium acnes KPA171202]
 gi|289424366|ref|ZP_06426149.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          SK187]
 gi|289428406|ref|ZP_06430092.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          J165]
 gi|295130039|ref|YP_003580702.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          SK137]
 gi|50839562|gb|AAT82229.1| cold shock protein [Propionibacterium acnes KPA171202]
 gi|289155063|gb|EFD03745.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          SK187]
 gi|289158378|gb|EFD06595.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          J165]
 gi|291375123|gb|ADD98977.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          SK137]
 gi|332674879|gb|AEE71695.1| cold shock protein [Propionibacterium acnes 266]
          Length = 127

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +++Y+  KG+GF+T +     G DV+++ SA+  AG+  L  GQ V +  V+   
Sbjct: 1  MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 55

Query: 62 NGKYSAENLKLVPKSSN 78
               A +L+++   ++
Sbjct: 56 G--EQALSLQIIETPAS 70


>gi|85717414|ref|ZP_01048364.1| cold shock protein [Nitrobacter sp. Nb-311A]
 gi|85695769|gb|EAQ33677.1| cold shock protein [Nitrobacter sp. Nb-311A]
          Length = 62

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           +G  FI PE     G DVF+H SAV  AGL +L+EG  V+++ VQN   GK SAE
Sbjct: 5  AEGLRFIEPES---GGKDVFVHISAVERAGLSSLSEGDKVSHEVVQN--RGKESAE 55


>gi|189347308|ref|YP_001943837.1| cold-shock DNA-binding domain protein [Chlorobium limicola DSM
          245]
 gi|189341455|gb|ACD90858.1| cold-shock DNA-binding domain protein [Chlorobium limicola DSM
          245]
          Length = 85

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          + R  +KW++  KGYGFI    +   G+DVF+H SA+ S      L +   V +   +  
Sbjct: 1  MERSKVKWFDGKKGYGFIV---NPNGGEDVFVHFSAIVSEQTFKVLNQDADVEFVLEKTQ 57

Query: 61 ANGKYSAENLK 71
              Y A+N++
Sbjct: 58 KG--YQAKNVR 66


>gi|313205947|ref|YP_004045124.1| colD-shock DNA-binding protein family [Riemerella anatipestifer
          DSM 15868]
 gi|312445263|gb|ADQ81618.1| cold-shock DNA-binding protein family [Riemerella anatipestifer
          DSM 15868]
 gi|315022260|gb|EFT35288.1| Cold shock protein CspA [Riemerella anatipestifer RA-YM]
 gi|325336613|gb|ADZ12887.1| Cold shock protein [Riemerella anatipestifer RA-GD]
          Length = 63

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 11/72 (15%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQND 60
          +  G++K++N  KG+GFITP   +  G+DVF+H S     GL   + E   V Y+  Q  
Sbjct: 1  MQEGTVKFFNETKGFGFITP---SNGGEDVFVHTS-----GLKTKVHENDKVVYELQQGK 52

Query: 61 ANGKYSAENLKL 72
               +A N+KL
Sbjct: 53 KG--INAVNVKL 62


>gi|110680380|ref|YP_683387.1| cold shock protein [Roseobacter denitrificans OCh 114]
 gi|109456496|gb|ABG32701.1| cold shock protein [Roseobacter denitrificans OCh 114]
          Length = 178

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GF+  +     G D+ LH + + + G  ++ +G  V  + VQ    G 
Sbjct: 13 GVVKWFDPVKGFGFVVADA---GGPDILLHVNVLRNFGQSSVADGARVELE-VQRTERGV 68

Query: 65 YSAENLKLVPKSSN 78
           + + L L+P  S+
Sbjct: 69 QATQVLSLLPPESD 82



 Score = 57.3 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  +   D+FLH   +  +GL +L  G+ +    ++    G  
Sbjct: 107 RVKWFDKGKGFGFANVFGRRD---DIFLHMEVLRRSGLSDLAPGEALALRVIEG-KRGHM 162

Query: 66  SAEN 69
           +AE 
Sbjct: 163 AAEV 166


>gi|291529654|emb|CBK95240.1| cold-shock DNA-binding protein family [Eubacterium rectale
          M104/1]
          Length = 66

 Score = 70.4 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
           G +KW++  KGYGF+T     E G D F+H SA+ S      L     VT+D    D  
Sbjct: 2  TGKVKWFSNRKGYGFVT----GEDGQDYFVHFSAIESDKSFKTLHTNADVTFDVQVVD-- 55

Query: 63 GKYSAENLK 71
          GK  A  +K
Sbjct: 56 GKQYAVKVK 64


>gi|146197784|dbj|BAF57611.1| Y-Box factor protein [Dugesia japonica]
          Length = 178

 Score = 70.4 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQNDA 61
          G +KWYN  KGYGFI  +   E   DVF+H+SA+         +L E + V +D V+   
Sbjct: 5  GKVKWYNVKKGYGFIHRDDVDE---DVFVHQSAISRCQPGKQKSLGEDEDVLFDVVKGSK 61

Query: 62 N 62
           
Sbjct: 62 G 62


>gi|282853550|ref|ZP_06262887.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          J139]
 gi|282583003|gb|EFB88383.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          J139]
 gi|314922101|gb|EFS85932.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL001PA1]
 gi|314965185|gb|EFT09284.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL082PA2]
 gi|315093944|gb|EFT65920.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL060PA1]
 gi|315104625|gb|EFT76601.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL050PA2]
 gi|327329475|gb|EGE71235.1| cold-shock domain protein [Propionibacterium acnes HL103PA1]
          Length = 127

 Score = 70.4 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +++Y+  KG+GF+T +     G DV+++ SA+  AG+  L  GQ V +  V+   
Sbjct: 1  MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 55

Query: 62 NGKYSAENLKLVP 74
               A +L++V 
Sbjct: 56 G--EQALSLQIVE 66


>gi|111182511|gb|ABH07676.1| cold-shock domain protein [Scophthalmus maximus]
          Length = 297

 Score = 70.4 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 98  -KGAEAANV 105


>gi|47220428|emb|CAG03208.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 298

 Score = 70.4 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 41  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 98  -KGAEAANV 105


>gi|302392725|ref|YP_003828545.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
 gi|302204802|gb|ADL13480.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum
          DSM 5501]
          Length = 67

 Score = 70.4 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47
          M+  G++KW++ +KG+GFI         DDVF+H SA+A  G  +L 
Sbjct: 1  MILSGTVKWFDSNKGFGFIERPDE----DDVFVHYSAIAEDGFKDLD 43


>gi|73950970|ref|XP_855993.1| PREDICTED: similar to Nuclease sensitive element binding protein 1
           (Y-box binding protein-1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)... isoform [Canis
           familiaris]
          Length = 305

 Score = 70.4 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGF+      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 63  GTVKWFNVRNGYGFL---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 120 -KGAEAANV 127


>gi|76364244|sp|P0C0F0|CSPA_STRPY RecName: Full=Major cold shock protein
 gi|1402783|gb|AAC80258.1| major cold-shock protein [Streptococcus pyogenes]
          Length = 45

 Score = 70.0 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFI+    TE+G DVF H SA+ + G   L EGQ V +D  +   
Sbjct: 1  EKGFGFIS----TENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 45


>gi|167946065|ref|ZP_02533139.1| Cold-shock DNA-binding protein [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 61

 Score = 70.0 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
           G++KW++  KGYGFI  E     G D+F+H  A+   G  +L +G
Sbjct: 1  TGTVKWFDSGKGYGFIERE----GGKDLFVHFRAIVGEGHVSLEDG 42


>gi|281352788|gb|EFB28372.1| hypothetical protein PANDA_005261 [Ailuropoda melanoleuca]
          Length = 276

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+GFI+    EGS      DVF+H+S +   G  +L EG+ V + + ++
Sbjct: 57  TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 116

Query: 60  DAN 62
              
Sbjct: 117 SKG 119


>gi|295136384|ref|YP_003587060.1| cold shock protein [Zunongwangia profunda SM-A87]
 gi|294984399|gb|ADF54864.1| cold shock protein [Zunongwangia profunda SM-A87]
          Length = 64

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KGYGFIT +   ++G D+F+H + +       L EG  V Y  V+ +   
Sbjct: 2  EGTVKFFNESKGYGFITND---DTGRDIFVHVTGIDGE---TLNEGDKVEY--VEKEGRK 53

Query: 64 KYSAENLKLV 73
            +A+ ++++
Sbjct: 54 GLNADQVRVI 63


>gi|17533635|ref|NP_496366.1| Y-box family member (cey-1) [Caenorhabditis elegans]
 gi|3876637|emb|CAB04257.1| C. elegans protein F33A8.3, confirmed by transcript evidence
          [Caenorhabditis elegans]
          Length = 208

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G++KW+N   GYGFI     T++ +D+F+H++A+ +      L +L + + V +D V+ 
Sbjct: 22 KGTVKWFNVKNGYGFI---NRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEG 78

Query: 60 DANGKYSAEN 69
           + G  +A  
Sbjct: 79 -SKGLEAASV 87


>gi|304321239|ref|YP_003854882.1| cold shock protein [Parvularcula bermudensis HTCC2503]
 gi|303300141|gb|ADM09740.1| cold shock protein [Parvularcula bermudensis HTCC2503]
          Length = 173

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++  KGYGFIT E     G DV +H S +  +G     EG +VT + ++++  G
Sbjct: 15 RGFVKWFDQTKGYGFITDEA---GGRDVLIHSSCLKQSGRATAPEGAIVTCEAIESE-KG 70

Query: 64 KYSAENLKL 72
            +   + L
Sbjct: 71 LQATRIINL 79



 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW++  KGYGF+T   +T + +D+F+H   V +AGL  L  GQ +   Y +       
Sbjct: 108 TVKWFSRAKGYGFLT---ATNANEDIFVHMEVVRAAGLSELQPGQRLRASYGRGTKGLLA 164

Query: 66  SA 67
           +A
Sbjct: 165 AA 166


>gi|114554895|ref|XP_513232.2| PREDICTED: protein lin-28 homolog A [Pan troglodytes]
          Length = 209

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF+          +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 42  GICKWFNVRMGFGFLCMTARAGVALDPHRDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|284033793|ref|YP_003383724.1| cold-shock DNA-binding domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283813086|gb|ADB34925.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM
          17836]
          Length = 127

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF+    S E G DV++   A+  AG+ NL  GQ V +  V+   
Sbjct: 1  MPVGKVKWYDSEKGFGFL----SKEEGGDVYVRAEAL-PAGVTNLKPGQKVEFGVVEGRK 55

Query: 62 NGKYSAENLKLVPK 75
               A  ++L+  
Sbjct: 56 G--EQALQVRLIDP 67


>gi|167045316|gb|ABZ09974.1| putative cold-shock DNA-binding domain protein [uncultured marine
          crenarchaeote HF4000_APKG9P22]
          Length = 64

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  EG      D+F+H++ V       + +G  V ++  + + 
Sbjct: 1  METGTVKWFNQTKGFGFIEREGEA---KDLFVHKTEVEG----TIRDGDKVEFELGETEK 53

Query: 62 NGKYSAENLKLVP 74
              +A  +K V 
Sbjct: 54 G--PNAVKVKRVE 64


>gi|150017771|ref|YP_001310025.1| cold-shock DNA-binding domain-containing protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|149904236|gb|ABR35069.1| putative cold-shock DNA-binding domain protein [Clostridium
          beijerinckii NCIMB 8052]
          Length = 63

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N +KG+GFI  EG      DVF+H S++  +G  ++ EG  V +D  +   
Sbjct: 1  MKTGTVKFFNSEKGFGFIEVEGE----KDVFVHSSSL--SGF-SIQEGDKVQFDVEKGTK 53

Query: 62 NGKYSAENLKLV 73
               A N++ V
Sbjct: 54 G--PQATNIQRV 63


>gi|110598385|ref|ZP_01386658.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
 gi|110339994|gb|EAT58496.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
          Length = 85

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
          +    +KW++  KGYGFI    + + G+D+F+H SA+ S      L +   V ++     
Sbjct: 1  MAISKVKWFDGKKGYGFI---LNPDGGEDIFVHFSAILSEQSFKVLNQDAEVDFELDTTQ 57

Query: 61 ANGKYSAENLKLVPKSSN 78
                A+N++ +   S 
Sbjct: 58 KG--LQAKNVRDISGISQ 73


>gi|1402761|gb|AAC80245.1| major cold-shock protein [Lactococcus lactis subsp. cremoris]
 gi|1402777|gb|AAC80255.1| major cold-shock protein [Staphylococcus epidermidis]
          Length = 45

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  EKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGDR 45


>gi|194336044|ref|YP_002017838.1| cold-shock DNA-binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308521|gb|ACF43221.1| cold-shock DNA-binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 84

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
          +    +KW++  KGYGF+    + + G+D+F+H SA+ S      L +   V ++  +  
Sbjct: 1  MALSKVKWFDGKKGYGFL---LNPDGGEDIFVHFSAIQSEQSFKVLNQDAEVDFELDKTQ 57

Query: 61 ANGKYSAENLKLV 73
                A+N++ V
Sbjct: 58 KG--LQAKNVREV 68


>gi|117621225|ref|YP_857729.1| cold-shock protein, DNA-binding [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|117562632|gb|ABK39580.1| cold-shock protein, DNA-binding [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
          Length = 214

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 8/74 (10%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTES--GDDVFLHRSAVASAGLFNLTE-GQLVTYDY 56
          M ++G  ++W N  +G+GFI P+       G ++F+H SA+ S G  +L + G+ V+Y  
Sbjct: 1  MRYQGRIVRW-NEARGFGFIAPDQGDGEPKGAELFVHISALQSDG--SLPKIGERVSYQL 57

Query: 57 VQNDANGKYSAENL 70
            +  +GK  AE +
Sbjct: 58 G-SGQDGKPRAEQV 70


>gi|120437418|ref|YP_863104.1| cold shock-like protein [Gramella forsetii KT0803]
 gi|117579568|emb|CAL68037.1| cold shock-like protein [Gramella forsetii KT0803]
          Length = 64

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KGYGFIT +   ++  D+F+H + +       L EG  V Y+  +     
Sbjct: 2  QGTVKFFNESKGYGFITND---DTKRDIFVHITGLNGE---TLQEGDRVEYEETEGKKG- 54

Query: 64 KYSAENLKLVP 74
            +A  ++++ 
Sbjct: 55 -VNATEVRVIE 64


>gi|83592002|ref|YP_425754.1| cold-shock DNA-binding protein family protein [Rhodospirillum
          rubrum ATCC 11170]
 gi|83574916|gb|ABC21467.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
          11170]
          Length = 68

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G+I W++   GYGFI P+   + G D+ +   A+  +GL +L +GQ V Y   +   
Sbjct: 1  MLTGTITWFDTINGYGFIRPD---DGGGDIAVDMPALDRSGLRSLRDGQRVAYRLTRPRF 57

Query: 62 NGKYS 66
           G  +
Sbjct: 58 GGAMA 62


>gi|295689096|ref|YP_003592789.1| cold-shock DNA-binding domain-containing protein [Caulobacter
          segnis ATCC 21756]
 gi|295430999|gb|ADG10171.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC
          21756]
          Length = 197

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW++  KGYGFI P+   ++G  DV LH +++ + G     EG ++  D V+    G
Sbjct: 20 GRVKWFDAGKGYGFIIPDDPGQTGLKDVLLHVTSLRNCGRETAMEGAVIVCDVVRR-PKG 78

Query: 64 KYSAENLKLVPKSS 77
             +E + L   S+
Sbjct: 79 WQVSEVVNLDESSA 92



 Score = 61.5 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             R  +KW+N  KGYGF+  +       D+F+H   +   GL +L  G  V   + +   
Sbjct: 129 AERAKVKWFNRTKGYGFVVRDAEP---GDIFVHIETLRRGGLEDLQPGDDVLVRFARG-P 184

Query: 62  NGKYSAE 68
            G   AE
Sbjct: 185 KGLVVAE 191


>gi|73950974|ref|XP_856066.1| PREDICTED: similar to Nuclease sensitive element binding protein 1
           (Y-box binding protein-1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)... isoform [Canis
           familiaris]
          Length = 314

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGF+      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 63  GTVKWFNVRNGYGFL---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 120 -KGAEAANV 127


>gi|227876361|ref|ZP_03994473.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris ATCC
          35243]
 gi|269975926|ref|ZP_06182930.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris 28-1]
 gi|306817253|ref|ZP_07450999.1| cold-shock domain family protein [Mobiluncus mulieris ATCC 35239]
 gi|307700373|ref|ZP_07637412.1| putative cold shock protein [Mobiluncus mulieris FB024-16]
 gi|227842902|gb|EEJ53099.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris ATCC
          35243]
 gi|269935754|gb|EEZ92284.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris 28-1]
 gi|304649933|gb|EFM47212.1| cold-shock domain family protein [Mobiluncus mulieris ATCC 35239]
 gi|307614358|gb|EFN93588.1| putative cold shock protein [Mobiluncus mulieris FB024-16]
          Length = 125

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ DKG+GFIT       G +VFLH SA+   G+     G  V Y  + +  
Sbjct: 1  MPNGKVKWYDADKGFGFIT----GSDGIEVFLHASAL-PPGVTEPKAGTRVEYSVI-DGK 54

Query: 62 NGKYSAENLKLVPK 75
           G   A N+ ++ +
Sbjct: 55 RG-AQAMNVTILEE 67


>gi|258593069|emb|CBE69380.1| Cold shock protein, DNA binding [NC10 bacterium 'Dutch sediment']
          Length = 67

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW+N  K +GFI  +   + G D F+H S V   G     E   V +D  Q+D  G
Sbjct: 2  KGKVKWFNVTKRFGFIVRD---DGGQDAFVHASDVE--GGATPRENDDVEFDLGQDD-RG 55

Query: 64 KYSAENLKLV 73
          +  A  ++++
Sbjct: 56 RAKAVRVRIL 65


>gi|159162382|pdb|1H95|A Chain A, Solution Structure Of The Single-Stranded Dna-Binding
          Cold Shock Domain (Csd) Of Human Y-Box Protein 1 (Yb1)
          Determined By Nmr (10 Lowest Energy Structures)
          Length = 79

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 11 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 67

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 68 -KGAEAANV 75


>gi|317509214|ref|ZP_07966835.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
 gi|316252424|gb|EFV11873.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
          Length = 145

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ DKG+GF+T E     GDDV++  SA+  AGL  L  GQ+V +    +  
Sbjct: 5  VPTGKVKWYSADKGFGFLTQE----DGDDVYVGSSAL-PAGLEGLKPGQIVEFGMA-DGR 58

Query: 62 NGKYS 66
           G  +
Sbjct: 59 RGPQA 63


>gi|326936337|ref|XP_003214212.1| PREDICTED: protein lin-28 homolog A-like, partial [Meleagris
          gallopavo]
          Length = 191

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF++         +S  DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 25 GICKWFNVRMGFGFLSMTAKGGATLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSS 84

Query: 61 AN 62
            
Sbjct: 85 KG 86


>gi|291045286|ref|NP_001166916.1| protein lin-28 homolog A [Felis catus]
 gi|73950555|ref|XP_854985.1| PREDICTED: similar to RNA-binding protein LIN-28 [Canis
          familiaris]
 gi|264670123|gb|ACY72346.1| lin-28-like protein [Felis catus]
          Length = 206

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97

Query: 61 AN 62
            
Sbjct: 98 KG 99


>gi|229816847|ref|ZP_04447129.1| hypothetical protein BIFANG_02095 [Bifidobacterium angulatum DSM
          20098]
 gi|229785863|gb|EEP21977.1| hypothetical protein BIFANG_02095 [Bifidobacterium angulatum DSM
          20098]
          Length = 129

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++W++  KGYGFI     +E G+DVFL  +A+  AG   L +   V Y  +    
Sbjct: 1  MPTGRVRWFDAAKGYGFIA----SEKGEDVFLPAAAL-PAGTTTLRKNAKVEYAVIAGRR 55

Query: 62 NGKYSAENLKLV 73
               A ++KL+
Sbjct: 56 G--PQAMDVKLI 65


>gi|227529020|ref|ZP_03959069.1| major cold shock protein [Lactobacillus vaginalis ATCC 49540]
 gi|227351032|gb|EEJ41323.1| major cold shock protein [Lactobacillus vaginalis ATCC 49540]
          Length = 71

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K ++ +KG+GFI      E    +F+H + +   GL  LT G+ V    VQ   
Sbjct: 1  MLQGTVKSFDREKGWGFIDVPHEGE----IFVHYTGIEGHGLRILTPGERVALVIVQG-K 55

Query: 62 NGKYSAENLKL 72
           G  +A   +L
Sbjct: 56 RGPQAAHVQRL 66


>gi|157118310|ref|XP_001653164.1| Y-box binding protein [Aedes aegypti]
 gi|108883287|gb|EAT47512.1| Y-box binding protein [Aedes aegypti]
          Length = 304

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G +KW+N   GYGFI    + E   DVF+H+SA+A       + ++ +G++V +D V  
Sbjct: 16 TGVVKWFNVKSGYGFINRGDTQE---DVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 72

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 73 E-KGNEAANV 81


>gi|90419542|ref|ZP_01227452.1| cold shock family protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336479|gb|EAS50220.1| cold shock family protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 192

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KG+GFI P+   + G D+ LH + +   G     EG  V  +  Q +  
Sbjct: 28 GHIKWFDVSKGFGFIVPD---DGGADILLHVTCLRRDGHATALEGARVVCEVQQGERG 82



 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KGYGF+T   + E  +D+F+H   +   G+  L  GQ V   + Q D  G+ +
Sbjct: 122 VKWFNRTKGYGFLT---TGEGTEDIFIHMETLRRFGMTELRPGQDVLVRFGQGD-KGRMA 177

Query: 67  AE 68
           AE
Sbjct: 178 AE 179


>gi|301755044|ref|XP_002913351.1| PREDICTED: protein lin-28 homolog A-like [Ailuropoda melanoleuca]
 gi|281351598|gb|EFB27182.1| hypothetical protein PANDA_001150 [Ailuropoda melanoleuca]
          Length = 206

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97

Query: 61 AN 62
            
Sbjct: 98 KG 99


>gi|91217017|ref|ZP_01253980.1| cold shock protein [Psychroflexus torquis ATCC 700755]
 gi|91184888|gb|EAS71268.1| cold shock protein [Psychroflexus torquis ATCC 700755]
          Length = 63

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K++N  KGYGFIT +   E+G+D+F+H + +      +L EG  V Y+  +     
Sbjct: 2  QGKVKFFNESKGYGFITND---ETGEDIFVHVTGLNGE---SLNEGDEVEYNEEEGRKG- 54

Query: 64 KYSAENLKLV 73
            +A +++L+
Sbjct: 55 -MNASDVRLI 63


>gi|56754487|gb|AAW25431.1| unknown [Schistosoma japonicum]
          Length = 104

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G +KW+N   GYGFI      ++  D+F+H+SA++         +L EG+ V +  V+ 
Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83

Query: 60 DAN 62
          D  
Sbjct: 84 DKG 86


>gi|94732354|emb|CAK04626.1| novel protein (zgc:55584) [Danio rerio]
          Length = 179

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF++    EG       DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 30 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSS 89

Query: 61 AN 62
            
Sbjct: 90 KG 91


>gi|82802829|gb|ABB92460.1| rcNSEP1 [Homo sapiens]
          Length = 319

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H +A         L ++ +G+ V +D V+ +
Sbjct: 57  GTVKWFNVRNGYGFI---HRNDTKEDVFVHHTAXKKNNPRKYLRSVGDGEXVEFDVVEGE 113

Query: 61  ANGKYSAENLK 71
              K  A N+ 
Sbjct: 114 KGAK--AANVT 122


>gi|3121935|sp|Q56922|CSPA_YEREN RecName: Full=Major cold shock protein
 gi|1402789|gb|AAC80259.1| major cold-shock protein [Yersinia enterocolitica]
          Length = 46

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          DKG+GFITP    +   DVF+H SA+ S     L EGQ V +       
Sbjct: 1  DKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSIENGAK 46


>gi|289770129|ref|ZP_06529507.1| cold-shock DNA-binding domain-containing protein [Streptomyces
          lividans TK24]
 gi|289700328|gb|EFD67757.1| cold-shock DNA-binding domain-containing protein [Streptomyces
          lividans TK24]
          Length = 60

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 28 GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          G DVF+H SA+   G   L EGQ V ++  Q        A+ ++L
Sbjct: 16 GADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQKG--PQADMVRL 58


>gi|307209281|gb|EFN86372.1| Y-box factor-like protein [Harpegnathos saltator]
          Length = 278

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI    + E   DVF+H+SA+        + ++ +G++V +D V  
Sbjct: 25 TGTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIIKNNPRKAVRSVGDGEVVEFDVVIG 81

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 82 E-KGHEAANV 90


>gi|313214830|emb|CBY41075.1| unnamed protein product [Oikopleura dioica]
 gi|313231198|emb|CBY08313.1| unnamed protein product [Oikopleura dioica]
          Length = 292

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            GS+KW+N   GYGFI  + + E   DVF+H++A+        L ++ +G+ V +D V+ 
Sbjct: 42  TGSVKWFNVRNGYGFIHRDDTDE---DVFVHQTAIVKNNPKKFLRSVGDGEKVVFDVVEG 98

Query: 60  DANGKYSAEN 69
              G  +A  
Sbjct: 99  Q-KGNEAANV 107


>gi|86141013|ref|ZP_01059572.1| cold shock protein [Leeuwenhoekiella blandensis MED217]
 gi|85832955|gb|EAQ51404.1| cold shock protein [Leeuwenhoekiella blandensis MED217]
          Length = 63

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KGYGFIT +   ++G D+F+H + +       L EG  V Y   +    G
Sbjct: 2  KGTVKFFNESKGYGFITND---DTGKDIFVHATGLNGE---VLEEGDQVEY-IEEEGRKG 54

Query: 64 KYSAEN 69
            +A+ 
Sbjct: 55 MVAAQV 60


>gi|326384174|ref|ZP_08205856.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
          NRRL B-59395]
 gi|326197039|gb|EGD54231.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
          NRRL B-59395]
          Length = 139

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+  KG+GF++       G+DV++  +A+ +  +  L  GQ V +D      
Sbjct: 1  MPTGRVKWYDSAKGFGFLSQ----TDGEDVYVRANALPAD-VPELKVGQKVEFDMA-AGR 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  +     L P  S
Sbjct: 55 RGPQALRVTVLEPAPS 70


>gi|291399525|ref|XP_002716148.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus]
 gi|291409216|ref|XP_002720890.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus]
          Length = 209

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 42  GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|110763831|ref|XP_393344.3| PREDICTED: hypothetical protein LOC409854 [Apis mellifera]
          Length = 279

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI      ++ +DVF+H+SA+        + ++ +G++V +D V  
Sbjct: 25 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVIG 81

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 82 E-KGHEAANV 90


>gi|167045315|gb|ABZ09973.1| putative cold-shock DNA-binding domain protein [uncultured marine
          crenarchaeote HF4000_APKG9P22]
          Length = 64

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  EG      D+F+H++ +       + +G  V ++  + + 
Sbjct: 1  METGTVKWFNQSKGFGFIEREGEA---KDLFVHQTELEGE----IHDGDKVEFELGETEK 53

Query: 62 NGKYSAENLKLVP 74
              +A  +K V 
Sbjct: 54 G--PNAVKVKRVE 64


>gi|82654186|ref|NP_001026944.2| protein lin-28 homolog A [Gallus gallus]
 gi|116248185|sp|Q45KJ5|LN28A_CHICK RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
 gi|82622705|gb|AAZ38895.2| LIN28A [Gallus gallus]
          Length = 202

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF++         +S  DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 36 GICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSS 95

Query: 61 AN 62
            
Sbjct: 96 KG 97


>gi|308153249|ref|NP_001015806.2| protein lin-28 homolog A isoform 1 [Xenopus (Silurana)
          tropicalis]
          Length = 188

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF+T         E+  DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 29 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSS 88

Query: 61 AN 62
            
Sbjct: 89 KG 90


>gi|302530552|ref|ZP_07282894.1| cold-shock DNA-binding domain-containing protein [Streptomyces
          sp. AA4]
 gi|302439447|gb|EFL11263.1| cold-shock DNA-binding domain-containing protein [Streptomyces
          sp. AA4]
          Length = 139

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ +KG+GF+T +     G DV++ ++A+   G+  L  GQ + +    +  
Sbjct: 12 VPTGKVKWYDAEKGFGFVTQD----GGADVYIRKAAL-PHGVEGLKAGQRLEFGVA-DGR 65

Query: 62 NGKYSAENLKLVPKSS 77
           G  +     L P  S
Sbjct: 66 RGPQALSVRLLDPPPS 81


>gi|73950968|ref|XP_848371.1| PREDICTED: similar to Nuclease sensitive element binding protein 1
           (Y-box binding protein-1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)... isoform [Canis
           familiaris]
 gi|73950976|ref|XP_856109.1| PREDICTED: similar to Nuclease sensitive element binding protein 1
           (Y-box binding protein-1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)... isoform [Canis
           familiaris]
          Length = 326

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGF+      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 63  GTVKWFNVRNGYGFL---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 120 -KGAEAANV 127


>gi|55820885|ref|YP_139327.1| cold shock protein A [Streptococcus thermophilus LMG 18311]
 gi|55736870|gb|AAV60512.1| cold shock protein A [Streptococcus thermophilus LMG 18311]
          Length = 69

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G+I W+N DKG GFI      +   DVF +  ++         EGQ VT+D      
Sbjct: 4  MNKGTINWFNADKGCGFI----MADDMQDVFAYLISIQGNDFKKYDEGQKVTFDIKMTSR 59

Query: 62 N 62
           
Sbjct: 60 G 60


>gi|126328607|ref|XP_001363469.1| PREDICTED: similar to RNA-binding protein LIN-28 [Monodelphis
           domestica]
          Length = 205

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 39  GICKWFNVRMGFGFLSMTARAGVALDQPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 98

Query: 61  AN 62
             
Sbjct: 99  KG 100


>gi|296207133|ref|XP_002750510.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus]
          Length = 209

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 42  GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|313835454|gb|EFS73168.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL037PA2]
 gi|314928529|gb|EFS92360.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL044PA1]
 gi|314970448|gb|EFT14546.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL037PA3]
          Length = 135

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +++Y+  KG+GF+T +     G DV+++ SA+  AG+  L  GQ V +  V+   
Sbjct: 9  MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNALKPGQKVDFGIVEGRR 63

Query: 62 NGKYSAENLKLVPKSSN 78
               A +L++V   ++
Sbjct: 64 G--EQALSLQIVETPAS 78


>gi|178056460|ref|NP_001116605.1| protein lin-28 homolog A [Sus scrofa]
 gi|169627101|gb|ACA58282.1| LIN28 [Sus scrofa]
          Length = 205

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97

Query: 61 AN 62
            
Sbjct: 98 KG 99


>gi|330943369|gb|EGH45738.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 41

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 3/41 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42
             G++KW+N +KG+GFITP+G    GDD+F+H  A+ S G
Sbjct: 4  RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDG 41


>gi|26344984|dbj|BAC36141.1| unnamed protein product [Mus musculus]
          Length = 361

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +D F+H++ +        L ++ +G+ V +D  + +
Sbjct: 85  GTVKWFNVRNGYGFI---NRNDTKEDAFVHQTVIKKNNPRKYLRSVGDGETVEFDVGEGE 141

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 142 -KGAEAANV 149


>gi|163731974|ref|ZP_02139420.1| cold shock protein [Roseobacter litoralis Och 149]
 gi|161394272|gb|EDQ18595.1| cold shock protein [Roseobacter litoralis Och 149]
          Length = 178

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GF+  +     G D+ LH + + + G  ++ +G  V  + VQ    G 
Sbjct: 13 GVVKWFDPVKGFGFVVADA---GGPDILLHVNVLRNFGQSSVADGARVELE-VQRTDRGV 68

Query: 65 YSAENLKLVPKSSN 78
           + + L L+P  S+
Sbjct: 69 QATQVLSLLPPDSD 82



 Score = 57.3 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  +   D+FLH   +  +GL +L  G+ +    ++    G  
Sbjct: 107 RVKWFDKGKGFGFANVFGRRD---DIFLHMEVLRRSGLSDLAPGEALALRVIEG-KRGHM 162

Query: 66  SAEN 69
           +AE 
Sbjct: 163 AAEV 166


>gi|3121928|sp|Q51929|CSPA_PHOMO RecName: Full=Major cold shock protein
 gi|1402763|gb|AAC80249.1| major cold-shock protein [Photobacterium leiognathi subsp.
          mandapamensis]
          Length = 46

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GF+T       G DVF+H  A+AS G   LTEGQ V++D  Q   
Sbjct: 1  EKGFGFLTQ---NNGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQGQK 46


>gi|291394002|ref|XP_002713355.1| PREDICTED: DNA-binding protein B-like [Oryctolagus cuniculus]
          Length = 320

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 57  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLGSVGDGETVEFDVVEGE 113

Query: 61  AN 62
             
Sbjct: 114 KG 115


>gi|62858881|ref|NP_001016266.1| protein lin-28 homolog A isoform 2 [Xenopus (Silurana)
          tropicalis]
 gi|82230981|sp|Q5EB47|LN28A_XENTR RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
 gi|59809410|gb|AAH90084.1| lin-28 homolog [Xenopus (Silurana) tropicalis]
 gi|89266719|emb|CAJ82571.1| lin-28 homolog (C. elegans) [Xenopus (Silurana) tropicalis]
 gi|195539672|gb|AAI68066.1| lin-28 homolog (C. elegans) [Xenopus (Silurana) tropicalis]
          Length = 195

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF+T         E+  DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSS 95

Query: 61 AN 62
            
Sbjct: 96 KG 97


>gi|325106181|ref|YP_004275835.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
          12145]
 gi|324975029|gb|ADY54013.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
          12145]
          Length = 63

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KG+GFITP      GDD+F+H S + +     + E  +V ++ V+N  
Sbjct: 1  MKEGKVKFFNETKGFGFITP---LNGGDDIFVHSSGLETE----IRENDVVVFE-VENGR 52

Query: 62 NGKYSAENLKL 72
           G  +A N++L
Sbjct: 53 KG-LNAVNVRL 62


>gi|160879311|ref|YP_001558279.1| cold-shock DNA-binding domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160427977|gb|ABX41540.1| cold-shock DNA-binding domain protein [Clostridium
          phytofermentans ISDg]
          Length = 70

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 7/69 (10%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDA 61
          + G++KWY+ ++GYGF+    ST  G DVFLH S +   G    + EG+ + +D ++ + 
Sbjct: 4  YTGTVKWYDSERGYGFV----STNDGRDVFLHHSQIKEKGFDKEVHEGESIGFDIIEQEK 59

Query: 62 NGKYSAENL 70
              +A N+
Sbjct: 60 G--PAAINV 66


>gi|300796242|ref|NP_001179986.1| protein lin-28 homolog A [Bos taurus]
 gi|297472202|ref|XP_002685742.1| PREDICTED: lin-28 homolog [Bos taurus]
 gi|296490058|gb|DAA32171.1| lin-28 homolog [Bos taurus]
          Length = 205

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97

Query: 61 AN 62
            
Sbjct: 98 KG 99


>gi|114706186|ref|ZP_01439089.1| cold shock protein [Fulvimarina pelagi HTCC2506]
 gi|114539032|gb|EAU42153.1| cold shock protein [Fulvimarina pelagi HTCC2506]
          Length = 191

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKW++  KG+GFI P+   +   DV +H + +   G     EG  V  + VQ    G 
Sbjct: 29 GHIKWFDVAKGFGFIVPD---DESADVLIHVTCLRRDGYATALEGARVVCE-VQRSERGL 84

Query: 65 YSAENLKLVPKSS 77
           +   L +   +S
Sbjct: 85 SAFRVLSMDSSTS 97



 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQNDA 61
             ++KW+N  KGYGF+T   + E+ +D+F+H   +   G+  L  GQ   V Y       
Sbjct: 120 TATVKWFNRTKGYGFLT---TGENDEDIFIHMETLRRFGMTELRLGQEVKVRYGI---GR 173

Query: 62  NGKYSAEN 69
            GK +AE 
Sbjct: 174 KGKMAAEV 181


>gi|257066728|ref|YP_003152984.1| cold-shock DNA-binding domain-containing protein [Anaerococcus
          prevotii DSM 20548]
 gi|256798608|gb|ACV29263.1| cold-shock DNA-binding domain protein [Anaerococcus prevotii DSM
          20548]
          Length = 67

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60
          ++RG +K ++  +G+GFI  E     G+D+F+H S + S      L  GQ V ++ +   
Sbjct: 1  MNRGKVKTFDNKRGFGFIEWE-----GEDLFVHYSDIESDTSFKKLYPGQAVEFEKIDAP 55

Query: 61 ANGKYSAENLKLV 73
                A  ++++
Sbjct: 56 RG--AQAVKVRVI 66


>gi|90424288|ref|YP_532658.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
           palustris BisB18]
 gi|90106302|gb|ABD88339.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
           BisB18]
          Length = 220

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  + VQ  A G 
Sbjct: 56  GVIKWFDASKGYGFIVPD---NGSPDVLLHVTVLRRDGYQTAYEGARIICECVQR-AKGY 111

Query: 65  YSAENLKLVPKSS 77
            +   + +   ++
Sbjct: 112 QAFRVVSMDESTA 124



 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ  LV +     
Sbjct: 145 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRFG---P 198

Query: 60  DANGKYSAE 68
            + G  +AE
Sbjct: 199 GSKGMMAAE 207


>gi|147903687|ref|NP_001080918.1| protein lin-28 homolog A [Xenopus laevis]
 gi|82243501|sp|Q8JHC4|LN28A_XENLA RecName: Full=Protein lin-28 homolog A; Short=Lin-28A
 gi|21842301|gb|AAM77750.1|AF521098_1 RNA-binding protein LIN-28A [Xenopus laevis]
 gi|213623350|gb|AAI69625.1| RNA-binding protein LIN-28A [Xenopus laevis]
 gi|213626540|gb|AAI69597.1| RNA-binding protein LIN-28A [Xenopus laevis]
          Length = 195

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF+T         E+  DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPLDVFVHQSKLHMEGFRSLKEGESVEFTFKKSS 95

Query: 61 AN 62
            
Sbjct: 96 KG 97


>gi|327440390|dbj|BAK16755.1| cold shock protein [Solibacillus silvestris StLB046]
          Length = 77

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 8/79 (10%)

Query: 1  MVH--RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M H  RG  K ++ ++G+G+I+ EG      DV++H S++   G  +LT G+ V++D  +
Sbjct: 1  MRHDIRGVCKIFDDEEGWGWISIEGEA----DVWVHFSSIQMDGFKSLTIGEAVSFDLEE 56

Query: 59 NDANGKYS--AENLKLVPK 75
          N    + S  A N+K + K
Sbjct: 57 NPNLKEQSRRAVNVKKLAK 75


>gi|308498439|ref|XP_003111406.1| hypothetical protein CRE_03641 [Caenorhabditis remanei]
 gi|308240954|gb|EFO84906.1| hypothetical protein CRE_03641 [Caenorhabditis remanei]
          Length = 264

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KWY+  + YGFI+ +   +   DVF+H++A+A +      L  L + + V +D V+
Sbjct: 63  QGKVKWYSVLRRYGFISRD---DGEKDVFVHQTAIAKSDTEKFYLRTLADEEEVLFDLVE 119

Query: 59  NDANGKYSAEN 69
              NG  +A  
Sbjct: 120 G-KNGPEAANV 129


>gi|224134074|ref|XP_002327749.1| predicted protein [Populus trichocarpa]
 gi|222836834|gb|EEE75227.1| predicted protein [Populus trichocarpa]
          Length = 235

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62
           G +  ++  KG+GFI P+       D+F+H SA+ S  G   L E  +V +  + ND  
Sbjct: 15 TGRVVRFSDKKGFGFIKPDAGD---KDLFVHHSAIKSDGGYRTLYEDDVVEFTILLNDD- 70

Query: 63 GKYSAENLK 71
           KY A ++ 
Sbjct: 71 -KYQAVDVT 78


>gi|220921873|ref|YP_002497174.1| cold-shock DNA-binding domain-containing protein
          [Methylobacterium nodulans ORS 2060]
 gi|219946479|gb|ACL56871.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans
          ORS 2060]
          Length = 189

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKW++  KG+GFI P+       DV LH + +   G  + +EG  V  + VQ  A G 
Sbjct: 26 GRIKWFDVAKGFGFIVPD---NGAPDVLLHVTCLRRDGHQSASEGARVVVEAVQR-ARGW 81

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 82 QAFRVISL 89



 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           +    +KW+N  +G+GF++     +   D+F+H   +   G+  L  G+ V    V+  +
Sbjct: 115 LETAVVKWFNRLRGFGFLSR---GDGTPDIFVHMETLRRYGIAELKPGEKV---MVRYGD 168

Query: 60  DANGKYSAEN 69
            + G  +AE 
Sbjct: 169 GSKGLMAAEV 178


>gi|149695055|ref|XP_001504139.1| PREDICTED: RNA-binding protein LIN-28 [Equus caballus]
          Length = 205

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97

Query: 61 AN 62
            
Sbjct: 98 KG 99


>gi|13375938|ref|NP_078950.1| protein lin-28 homolog A [Homo sapiens]
 gi|74752750|sp|Q9H9Z2|LN28A_HUMAN RecName: Full=Protein lin-28 homolog A; Short=Lin-28A; AltName:
           Full=Zinc finger CCHC domain-containing protein 1
 gi|21842304|gb|AAM77751.1|AF521099_1 RNA-binding protein LIN-28 [Homo sapiens]
 gi|10433955|dbj|BAB14075.1| unnamed protein product [Homo sapiens]
 gi|20306208|gb|AAH28566.1| LIN28 protein [Homo sapiens]
 gi|56206248|emb|CAI21500.1| lin-28 homolog (C. elegans) [Homo sapiens]
 gi|119628219|gb|EAX07814.1| lin-28 homolog (C. elegans), isoform CRA_a [Homo sapiens]
 gi|123993445|gb|ABM84324.1| lin-28 homolog (C. elegans) [synthetic construct]
 gi|124000419|gb|ABM87718.1| lin-28 homolog (C. elegans) [synthetic construct]
 gi|261860154|dbj|BAI46599.1| lin-28 homolog [synthetic construct]
          Length = 209

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 42  GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|240849145|ref|NP_001155549.1| Y-box protein Ct-p40-like [Acyrthosiphon pisum]
 gi|239788387|dbj|BAH70879.1| ACYPI003867 [Acyrthosiphon pisum]
          Length = 305

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G +KW+N   GYGFI      ++ +D+F+H+SA+        + ++ +G+ V +D V+ 
Sbjct: 29 TGVVKWFNVKSGYGFI---NRNDTKEDIFVHQSAIIKNNPKKIVRSVGDGETVEFDVVEG 85

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 86 E-KGHEAANV 94


>gi|297665898|ref|XP_002811262.1| PREDICTED: protein lin-28 homolog A-like [Pongo abelii]
          Length = 209

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 42  GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|227499876|ref|ZP_03929969.1| cold shock protein CspC [Anaerococcus tetradius ATCC 35098]
 gi|227217985|gb|EEI83258.1| cold shock protein CspC [Anaerococcus tetradius ATCC 35098]
          Length = 68

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
          +++G +K ++  +G+GFI       SGDD+F+H + + +      L  GQ V ++  Q  
Sbjct: 1  MNKGEVKLFDNKRGFGFI-----KWSGDDLFVHYTDIEADDDYKKLFAGQKVEFEIKQAP 55

Query: 61 ANGKYSAENLKLVPK 75
                A  +K++  
Sbjct: 56 RG--PQAIRVKIIED 68


>gi|260062739|ref|YP_003195819.1| Cold shock protein [Robiginitalea biformata HTCC2501]
 gi|88784307|gb|EAR15477.1| Cold shock protein [Robiginitalea biformata HTCC2501]
          Length = 63

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KGYGFIT       G DVF+H S +       + E   V ++  Q   
Sbjct: 1  MQKGTVKFFNESKGYGFIT----GVEGKDVFVHASGLEEE----IRENDEVYFEVEQGQK 52

Query: 62 NGKYSAENLKL 72
              SA N+++
Sbjct: 53 G--PSAVNVRI 61


>gi|326802047|ref|YP_004319866.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
 gi|326552811|gb|ADZ81196.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
          Length = 63

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +K++N  KG+GFITP    + G ++F+H S +       + E   V+++  Q   
Sbjct: 1  MQKGIVKFFNETKGFGFITP---QDGGREIFVHSSGLK----DRIRENDDVSFEVQQGQK 53

Query: 62 NGKYSAENLKLV 73
              +A N+KL+
Sbjct: 54 G--PNAVNVKLI 63


>gi|332521005|ref|ZP_08397465.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
 gi|332043535|gb|EGI79731.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
          Length = 63

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFIT EGS     D F+H S +    +  + EG  V +D  +   
Sbjct: 1  MAQGTVKFFNDSKGFGFITEEGSD---KDHFVHISGL----IDEVREGDAVEFDLQEGRK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--MNAVNVKVI 63


>gi|284007581|emb|CBA73141.1| cold shock protein [Arsenophonus nasoniae]
          Length = 80

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++  +GYGFI+P      G D++++R A+A+     L EGQ V +   +N A
Sbjct: 12 LQMGRVKWFDVKEGYGFISP---VNGGQDIYVNRRAIANTKNKWLKEGQCVEFSITRN-A 67

Query: 62 NGKYSAENL 70
           G  +A+ +
Sbjct: 68 YGIAAADVI 76


>gi|308510156|ref|XP_003117261.1| CRE-CEY-1 protein [Caenorhabditis remanei]
 gi|308242175|gb|EFO86127.1| CRE-CEY-1 protein [Caenorhabditis remanei]
          Length = 202

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G++KW+N   GYGFI     T++ +D+F+H++A+ +      L +L + + V +D V+ 
Sbjct: 22 KGTVKWFNVKNGYGFI---NRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEG 78

Query: 60 DANGKYSAENLK 71
                 A N+ 
Sbjct: 79 SKG--LEASNVT 88


>gi|332245102|ref|XP_003271702.1| PREDICTED: protein lin-28 homolog A-like [Nomascus leucogenys]
          Length = 209

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 42  GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|328908285|gb|EGG28044.1| cold-shock DNA-binding domain protein [Propionibacterium sp. P08]
          Length = 127

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +++Y+  KG+GF+T +     G DV+++ SA+  AG+  L  GQ V +  V+   
Sbjct: 1  MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNALKPGQKVDFGIVEGRR 55

Query: 62 NGKYSAENLKLVPKSSN 78
               A +L++V   ++
Sbjct: 56 G--EQALSLQIVETPAS 70


>gi|125838843|ref|XP_001340141.1| PREDICTED: protein lin-28 homolog A-like [Danio rerio]
          Length = 198

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFI---TPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF+   T +G       DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 33 GVCKWFNVRMGFGFLSMNTRDGVPLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSS 92

Query: 61 AN 62
            
Sbjct: 93 KG 94


>gi|294791478|ref|ZP_06756635.1| cold-shock domain family protein [Scardovia inopinata F0304]
 gi|294457949|gb|EFG26303.1| cold-shock domain family protein [Scardovia inopinata F0304]
          Length = 129

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G I+W++  KGYGFIT    ++ G+DVFL ++A+  AG+  L +G  V +  + +  
Sbjct: 1  MPSGKIRWFDAKKGYGFIT----SDDGEDVFLPKTAL-PAGISKLRKGAKVEFSRI-DSR 54

Query: 62 NGKYSAENLKLVPKS 76
           G   A +L +V  +
Sbjct: 55 RGPQ-AMDLVVVGPA 68


>gi|170031766|ref|XP_001843755.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167870926|gb|EDS34309.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 247

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 7/65 (10%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
            G++KW+N   G+GFIT     ++G+D+F+H+S++        + ++ EG++V +  +  
Sbjct: 53  TGTVKWFNVKDGFGFITRH---DTGEDLFVHQSSILRPNSRHSVRSVGEGEVVEFGVIAT 109

Query: 60  DANGK 64
              G 
Sbjct: 110 KVTGP 114


>gi|46329818|gb|AAH68304.1| Lin-28 homolog (C. elegans) [Mus musculus]
          Length = 209

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 42  GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|72008824|ref|XP_785816.1| PREDICTED: similar to Y-Box factor [Strongylocentrotus
          purpuratus]
 gi|115974523|ref|XP_001178393.1| PREDICTED: similar to Y-Box factor [Strongylocentrotus
          purpuratus]
          Length = 326

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI  + + E   DVF+H+SA+          ++ +G++V +D V+  
Sbjct: 26 GTVKWFNVKNGYGFINRDDTKE---DVFVHQSAIVRNNPRKYQRSVGDGEVVEFDVVEGT 82

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 83 -KGNEAARV 90


>gi|291224890|ref|XP_002732435.1| PREDICTED: cold shock domain protein A short-like [Saccoglossus
          kowalevskii]
          Length = 283

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 26 GTVKWFNVKNGYGFI---NRNDTNEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 82

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 83 -KGNEAANV 90


>gi|1402765|gb|AAC80248.1| major cold-shock protein [Pediococcus pentosaceus]
          Length = 45

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +KG+GFI  EG     +DVF+H SA+   G  +L EGQ V ++ V+ D 
Sbjct: 1  EKGFGFIEVEGE----NDVFVHVSAINQDGYKSLEEGQSVEFEVVEGDR 45


>gi|22003878|ref|NP_665832.1| protein lin-28 homolog A [Mus musculus]
 gi|81914711|sp|Q8K3Y3|LN28A_MOUSE RecName: Full=Protein lin-28 homolog A; Short=Lin-28A; AltName:
           Full=Testis-expressed protein 17
 gi|21842298|gb|AAM77749.1|AF521097_1 RNA-binding protein LIN-28 [Mus musculus]
 gi|126540562|emb|CAM46107.1| lin-28 homolog (C. elegans) [Mus musculus]
 gi|148698092|gb|EDL30039.1| lin-28 homolog (C. elegans) [Mus musculus]
          Length = 209

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 42  GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|187779634|ref|ZP_02996107.1| hypothetical protein CLOSPO_03230 [Clostridium sporogenes ATCC
          15579]
 gi|187773259|gb|EDU37061.1| hypothetical protein CLOSPO_03230 [Clostridium sporogenes ATCC
          15579]
          Length = 69

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
          +H G +KW++ ++GYGFI    S  +G DV++H   V       +L EG+ V +D ++ +
Sbjct: 3  MHTGIVKWFDNERGYGFI----SGNNGKDVYVHSMQVKEKTHNKDLHEGEEVLFDIIERE 58

Query: 61 ANGKYSAENLKLV 73
                A N++ +
Sbjct: 59 KG--PVAINVQKL 69


>gi|324511273|gb|ADY44699.1| Y-box factor [Ascaris suum]
          Length = 269

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
            G +KWY+    YGFI  +   +  +DVF+H++A+A +      L +L EG+ V +D V+
Sbjct: 79  TGKVKWYSVRYHYGFIARDD--DVANDVFVHQTAIAKSRMVKYYLRSLEEGEEVLFDIVE 136

Query: 59  NDANGKYSAEN 69
               G  +A  
Sbjct: 137 G-KQGPEAANV 146


>gi|22901740|gb|AAN10049.1| Y-box protein Ct-p40 [Chironomus tentans]
          Length = 264

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI      ++  D+F+H+SA+        + ++ +G++V +D V  
Sbjct: 31 TGTVKWFNVKSGYGFI---NRNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAG 87

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 88 E-KGSEAANV 96


>gi|115524924|ref|YP_781835.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115518871|gb|ABJ06855.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
           BisA53]
          Length = 219

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  + VQ  A G 
Sbjct: 55  GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGFQTAYEGARIICECVQR-AKGY 110

Query: 65  YSAENLKLVPKSS 77
            +   + +   ++
Sbjct: 111 QAFRVVSMDESTA 123



 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ  LV +     
Sbjct: 144 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRFG---P 197

Query: 60  DANGKYSAE 68
            + G  +AE
Sbjct: 198 GSKGMMAAE 206


>gi|221234388|ref|YP_002516824.1| cold shock protein CspD [Caulobacter crescentus NA1000]
 gi|220963560|gb|ACL94916.1| cold shock protein cspD [Caulobacter crescentus NA1000]
          Length = 196

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW++  KGYGFI P+   ++G  DV LH +++ + G     EG ++  D V+    G
Sbjct: 20 GKVKWFDAGKGYGFIVPDDPGQTGLKDVLLHVTSLRNCGRETAMEGAIIVCDVVRR-PKG 78

Query: 64 KYSAENLKL 72
             +E + L
Sbjct: 79 WQVSEVVNL 87



 Score = 60.0 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
                +KW+N  KGYGF+  +       D+F+H   +   GL +L  G  V   + +   
Sbjct: 128 AEHAKVKWFNRTKGYGFVIRDAEP---GDIFVHIETLRRGGLEDLQPGDDVLVRFARG-P 183

Query: 62  NGKYSAE 68
            G   AE
Sbjct: 184 KGLVVAE 190


>gi|157816953|ref|NP_001102739.1| protein lin-28 homolog A [Rattus norvegicus]
 gi|149024199|gb|EDL80696.1| rCG30757 [Rattus norvegicus]
          Length = 209

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 42  GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|308497891|ref|XP_003111132.1| hypothetical protein CRE_03839 [Caenorhabditis remanei]
 gi|308240680|gb|EFO84632.1| hypothetical protein CRE_03839 [Caenorhabditis remanei]
          Length = 263

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KWY+  + YGFI+ E   +   DVF+H++A+A +      L  L + + V +D V+
Sbjct: 63  QGKVKWYSVLRRYGFISRE---DGEKDVFVHQTAIAKSATEKFYLRTLGDEEEVIFDLVE 119

Query: 59  NDANGKYSAEN 69
              NG  +A  
Sbjct: 120 G-KNGPEAANV 129


>gi|296128606|ref|YP_003635856.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
 gi|296020421|gb|ADG73657.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM
          20109]
          Length = 127

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ ++G+GFI      + G +VFLH SA+  AG+     G  V +    +  
Sbjct: 1  MPTGKVKWFDTERGFGFIA----DDEGGEVFLHASAL-PAGVTAPKPGTKVEFGVA-DGR 54

Query: 62 NGKYSAENLKLVP 74
           G  +     L P
Sbjct: 55 RGPQALSVTFLDP 67


>gi|291395012|ref|XP_002713966.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus]
          Length = 203

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 36 GICKWFNVRMGFGFLSMTARAGVALDPLVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 95

Query: 61 AN 62
            
Sbjct: 96 KG 97


>gi|255586259|ref|XP_002533782.1| cold shock protein, putative [Ricinus communis]
 gi|223526283|gb|EEF28595.1| cold shock protein, putative [Ricinus communis]
          Length = 257

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG + WY+ +KGYGFI P G    G DVF+H S++ S G  +L  G  + Y+ + ++A G
Sbjct: 111 RGILIWYSNEKGYGFIKPNG---GGVDVFVHSSSLKSNGHIHLGAGMPLEYETIISNA-G 166

Query: 64  KYSAENLK 71
           K  A N+ 
Sbjct: 167 KLQAINVT 174


>gi|163786612|ref|ZP_02181060.1| cold shock protein, DNA-binding [Flavobacteriales bacterium
          ALC-1]
 gi|159878472|gb|EDP72528.1| cold shock protein, DNA-binding [Flavobacteriales bacterium
          ALC-1]
          Length = 63

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT E   E+G D+F+H S +       L EG  V Y   + +   
Sbjct: 2  TGTVKFFNDSKGFGFITNE---ETGKDIFVHVSNLNGV---ELREGDNVEY--TEEEGRK 53

Query: 64 KYSAENLKLV 73
             A N++++
Sbjct: 54 GMVAANVQVL 63


>gi|305664855|ref|YP_003861142.1| cold shock protein [Maribacter sp. HTCC2170]
 gi|88707977|gb|EAR00216.1| cold shock protein [Maribacter sp. HTCC2170]
          Length = 64

 Score = 68.1 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KGYGFIT +GS E   D F+H S +    +  + EG +V ++  Q   
Sbjct: 1  MSKGTVKFFNDSKGYGFITEDGSNE---DHFVHISGL----IDEVREGDVVEFELQQGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K+V
Sbjct: 54 G--LNAVNVKVV 63


>gi|296395233|ref|YP_003660117.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rotundus DSM 44985]
 gi|296182380|gb|ADG99286.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
          44985]
          Length = 145

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KWY+ DKG+GF+T E     GDDV++  SA+  AG+  L  GQ+V +    +  
Sbjct: 5  VPTGKVKWYSADKGFGFLTQE----DGDDVYVGSSAL-PAGVDELKPGQVVEFGMA-DGR 58

Query: 62 NGKYS 66
           G  +
Sbjct: 59 RGPQA 63


>gi|184201477|ref|YP_001855684.1| cold shock protein [Kocuria rhizophila DC2201]
 gi|183581707|dbj|BAG30178.1| cold shock protein [Kocuria rhizophila DC2201]
          Length = 127

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 9/70 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ DKG+GF+     T+ G +VFLH SA+   G+  +  G  + +      A
Sbjct: 1  MPTGKVKWFDADKGFGFLA----TDDGQEVFLHSSALPR-GVTTVKPGTRMDFGI----A 51

Query: 62 NGKYSAENLK 71
          +GK  A+ L 
Sbjct: 52 DGKRGAQALS 61


>gi|157369959|ref|YP_001477948.1| cold-shock DNA-binding domain-containing protein [Serratia
          proteamaculans 568]
 gi|157321723|gb|ABV40820.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
          Length = 73

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++   GYGFI+P    +  D++++ R ++A+    +L EGQ V +   ++ +
Sbjct: 7  LQMGRVKWFDQAAGYGFISP---VDGSDEIYVSRRSIANTKNKSLNEGQNVEFSIYRS-S 62

Query: 62 NGKYSAENL 70
          +G  +A+ +
Sbjct: 63 HGLSAADVI 71


>gi|319951935|ref|YP_004163202.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
 gi|319420595|gb|ADV47704.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
          Length = 63

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFIT EGS+E   D F+H S +       + EG +V ++  Q   
Sbjct: 1  MNKGTVKFFNDSKGFGFITEEGSSE---DHFVHISGLVDE----IREGDVVEFELQQGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N++++
Sbjct: 54 G--LNAVNVRVL 63


>gi|268532128|ref|XP_002631192.1| C. briggsae CBR-CEY-1 protein [Caenorhabditis briggsae]
 gi|187036968|emb|CAP23634.1| CBR-CEY-1 protein [Caenorhabditis briggsae AF16]
          Length = 202

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          +G++KW+N   GYGFI     T++ +D+F+H++A+ +      L +L + + V +D V+ 
Sbjct: 22 KGTVKWFNVKNGYGFI---NRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEG 78

Query: 60 DAN 62
             
Sbjct: 79 SKG 81


>gi|296208902|ref|XP_002751304.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus]
          Length = 208

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDD----VFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF++         D    VF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 42  GICKWFNVRMGFGFLSMTARARVALDPPVNVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|167042126|gb|ABZ06860.1| putative cold-shock DNA-binding domain protein [uncultured marine
          crenarchaeote HF4000_ANIW93E5]
          Length = 69

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  EG      D+F+H++ V       +++G  V ++    + 
Sbjct: 6  MENGTVKWFNQTKGFGFIEREGDE---KDLFVHKTEVEG----TISDGDKVEFEVGSTEK 58

Query: 62 NGKYSAENLKLVP 74
              +A  +K V 
Sbjct: 59 G--PNAVKVKRVE 69


>gi|110597967|ref|ZP_01386248.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
 gi|110340416|gb|EAT58905.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
          Length = 70

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
          +  G +KW++  KG+GFI    +   G+D+F+H S + S      L +   V ++     
Sbjct: 1  MVNGKVKWFDVRKGFGFI---LNPNGGEDIFVHFSNIVSEEKFRFLNQDADVDFEL--EA 55

Query: 61 ANGKYSAENLK 71
             +  A N++
Sbjct: 56 RGNRLQALNVR 66


>gi|145298105|ref|YP_001140946.1| cold-shock protein, DNA-binding [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142850877|gb|ABO89198.1| cold-shock protein, DNA-binding [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 219

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYV 57
          M ++G I  +N  +G+GFITP  EG  + G ++F+H SA+ S G  +L   G+ V+Y   
Sbjct: 1  MRYQGRIASWNEARGFGFITPEQEGGEQQGSELFVHISALQSDG--SLPNVGERVSYQLG 58

Query: 58 QNDANGKYSAEN 69
              +   + + 
Sbjct: 59 TGKDDKPRAVQV 70


>gi|330937547|gb|EGH41489.1| cold shock protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 40

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 4/41 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42
             G++KW+N +KG+GFITP    +SGDD+F+H  A+ S G
Sbjct: 4  RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDG 40


>gi|118588945|ref|ZP_01546352.1| putative cold shock transcription regulator protein [Stappia
           aggregata IAM 12614]
 gi|118438274|gb|EAV44908.1| putative cold shock transcription regulator protein [Stappia
           aggregata IAM 12614]
          Length = 193

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            + ++KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ V   + +    
Sbjct: 118 EKATVKWFNRVKGFGFLTQ---GEGSEDIFIHMETLRRFGITELRPGQDVLVRFGEG-PK 173

Query: 63  GKYSAE 68
           G+ +AE
Sbjct: 174 GRMAAE 179



 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+IKW++  KGYGFI P+       D+ LH + +   G     EG  V  + + +   G 
Sbjct: 28 GTIKWFDVGKGYGFIVPDSGD---GDILLHVTCLRRDGYQTAYEGARVVCEVL-DRPRGL 83

Query: 65 YSAENLKLVPKSS 77
           +   L +   ++
Sbjct: 84 QAFRILSMDESTA 96


>gi|156385226|ref|XP_001633532.1| predicted protein [Nematostella vectensis]
 gi|156220603|gb|EDO41469.1| predicted protein [Nematostella vectensis]
          Length = 98

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI  +   ++ +D+F+H++A+A       L ++ +G++V ++ V  
Sbjct: 9  TGTVKWFNVKNGYGFINRD---DNKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVVSG 65

Query: 60 DANGKYSAENLK 71
                 A N+ 
Sbjct: 66 TKG--LEASNVT 75


>gi|159039857|ref|YP_001539110.1| cold-shock DNA-binding domain-containing protein [Salinispora
          arenicola CNS-205]
 gi|157918692|gb|ABW00120.1| cold-shock DNA-binding domain protein [Salinispora arenicola
          CNS-205]
          Length = 128

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+  KGYGF+T    ++ G DVFL ++A+  AG+ +L  GQ V +  V +  
Sbjct: 1  MPTGRVKWYDATKGYGFVT----SDEGGDVFLPKAAL-PAGVTDLKGGQRVDFSVVDSRR 55

Query: 62 NGKYSAENLKLVP 74
               A  +KL+ 
Sbjct: 56 G--AQAMGVKLLE 66


>gi|119383611|ref|YP_914667.1| cold-shock DNA-binding domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119373378|gb|ABL68971.1| cold-shock DNA-binding protein family [Paracoccus denitrificans
          PD1222]
          Length = 197

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GF+T     + G D+ LH + + + G  ++ EG  V    +Q    G 
Sbjct: 13 GVVKWFDGSKGFGFLT---DPDGGADILLHANVLRNFGQSSVAEGSHVI-AIIQKTPRGM 68

Query: 65 YSAENLKLVPKSSN 78
           + E L++ P +S 
Sbjct: 69 QAVEVLEITPPASE 82



 Score = 57.3 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF           DVFLH   +  +G  +L  G+ +    V +   G  
Sbjct: 107 RVKWFDKAKGFGF---ANIFADKADVFLHVEVLRHSGFADLAVGEAIALRVV-DGRRGMM 162

Query: 66  SAENLK 71
           +A+ L 
Sbjct: 163 AAQILS 168


>gi|239832152|ref|ZP_04680481.1| Cold shock-like protein cspG [Ochrobactrum intermedium LMG 3301]
 gi|239824419|gb|EEQ95987.1| Cold shock-like protein cspG [Ochrobactrum intermedium LMG 3301]
          Length = 233

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           G IKW++  KGYGFI P+      +D+ LH +++   G     EG  +  +  Q +  
Sbjct: 68  GHIKWFDVAKGYGFIVPD--QPGLNDILLHVTSLRRDGFQTALEGARIVCEVRQGERG 123



 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   + + D  G  +
Sbjct: 163 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGEGD-KGLMA 218

Query: 67  AE 68
           AE
Sbjct: 219 AE 220


>gi|326798201|ref|YP_004316020.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
 gi|326548965|gb|ADZ77350.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
          Length = 63

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KG+GFI P      G D+F+H S +    + ++ E   V+Y+  Q   
Sbjct: 1  MQEGVVKFFNETKGFGFIVP---NAGGGDIFVHSSGL----IDSIRENDHVSYEVEQGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|1402769|gb|AAC80251.1| major cold-shock protein [Proteus vulgaris]
          Length = 47

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          DKG+GFITP+  ++  DDVF+H SA+ S    +L EGQ V++       
Sbjct: 1  DKGFGFITPKDGSK--DDVFVHFSAIQSDSFKSLKEGQEVSFSIENGAK 47


>gi|76798540|ref|ZP_00780773.1| 'Cold-shock' DNA-binding domain, putative [Streptococcus
          agalactiae 18RS21]
 gi|76586104|gb|EAO62629.1| 'Cold-shock' DNA-binding domain, putative [Streptococcus
          agalactiae 18RS21]
          Length = 53

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
          +GFI+    +E+G DVF H S +   G   L EGQ VT+D  Q+   G   A N+ LV 
Sbjct: 1  FGFIS----SETGTDVFAHFSEIKVDGFKTLEEGQKVTFDI-QDGQRGPQ-ATNINLVK 53


>gi|86357508|ref|YP_469400.1| cold shock protein [Rhizobium etli CFN 42]
 gi|86281610|gb|ABC90673.1| cold shock protein [Rhizobium etli CFN 42]
          Length = 192

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI P+       DV LH + +   G   + EG  +    VQ    G
Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALVQRRERG 82

Query: 64 KYS 66
            +
Sbjct: 83 YQA 85



 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V    V+  +
Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170

Query: 60  DANGKYSAE 68
              G  +AE
Sbjct: 171 GEKGLMAAE 179


>gi|170572609|ref|XP_001892171.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
          malayi]
 gi|158602705|gb|EDP39010.1| 'Cold-shock' DNA-binding domain containing protein [Brugia
          malayi]
          Length = 244

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
          +G +KWY+    YGFI  +     G+DVF+H++A+A +      L  L +G+ V +D VQ
Sbjct: 7  KGKVKWYSVRYHYGFIARDD--NKGNDVFVHQTAIAKSRIIKYYLRTLGDGEEVLFDIVQ 64

Query: 59 NDANGKYSAEN 69
              G  +A  
Sbjct: 65 G-KQGPEAANV 74


>gi|114573575|ref|XP_001138838.1| PREDICTED: similar to transcription factor EF1(A) [Pan troglodytes]
          Length = 324

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ + + V +D V+ +
Sbjct: 61  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKKNPRKYLRSVGDRETVEFDVVEGE 117

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 118 -KGAEAANV 125


>gi|163755667|ref|ZP_02162786.1| cold shock protein [Kordia algicida OT-1]
 gi|161324580|gb|EDP95910.1| cold shock protein [Kordia algicida OT-1]
          Length = 69

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFIT EG+       F+H S +    +  + EG  V +D  +   
Sbjct: 7  MSKGTVKFFNDTKGFGFITEEGTNTEH---FVHISGL----IDEVREGDEVEFDLQEGRK 59

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 60 G--LNAVNVKVI 69


>gi|92117674|ref|YP_577403.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91800568|gb|ABE62943.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 68

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  GS+K++N +KGYGFI P+   +   D+FLH   +A   L        V Y+  +   
Sbjct: 1  MQTGSVKFFNAEKGYGFIQPD---DGTPDIFLHVHGLA-DKLRYPCPRDRVEYEVGKG-P 55

Query: 62 NGKYSAENLKLV 73
          +G+  AE + L+
Sbjct: 56 DGRLRAERVALI 67


>gi|146283892|ref|YP_001174045.1| cold-shock DNA-binding domain-containing protein [Pseudomonas
          stutzeri A1501]
 gi|145572097|gb|ABP81203.1| cold-shock DNA-binding domain protein [Pseudomonas stutzeri
          A1501]
          Length = 235

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  RG++K +N DKG+GFI PE   + G+++F+H SAV       L  G  V +     D
Sbjct: 1  MERRGTLKSWNDDKGFGFIRPE---QGGEELFVHISAVHGE-RRPLVGG-RVLF-VAGRD 54

Query: 61 ANGKYSAENLKL 72
          A G+  AE+++L
Sbjct: 55 AQGRLRAEHVRL 66


>gi|89054965|ref|YP_510416.1| cold-shock DNA-binding protein family protein [Jannaschia sp. CCS1]
 gi|88864514|gb|ABD55391.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1]
          Length = 181

 Score = 67.7 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G +E   DVF+H   +  +G   L  G+ V    V +   G+ 
Sbjct: 116 RVKWFDKAKGFGFANVFGHSE---DVFVHVEVLRRSGFTELQPGEAVAMKVV-DGPRGRM 171

Query: 66  SAEN 69
           +AE 
Sbjct: 172 AAEV 175



 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GF+  +   E G D+ LH + + S G  ++ EG  V     Q    G 
Sbjct: 24 GVVKWFDTTKGFGFVLSD---EGGPDILLHANVLRSFGRGSIAEGARV-MLRTQATGRGL 79

Query: 65 YSAENLKL 72
           + E + +
Sbjct: 80 QAVEIIAI 87


>gi|319953293|ref|YP_004164560.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
 gi|319421953|gb|ADV49062.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
          Length = 64

 Score = 67.7 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K+YN  KGYGFIT +    +G D+F+H +++  A    L EG  V Y+  ++   G
Sbjct: 2  TGTVKFYNGSKGYGFITND---NTGKDIFVHATSLNGA---ELNEGDQVEYE-EEDGEKG 54

Query: 64 KYSAEN 69
            +A+ 
Sbjct: 55 IVAAQV 60


>gi|149369607|ref|ZP_01889459.1| cold shock protein [unidentified eubacterium SCB49]
 gi|149357034|gb|EDM45589.1| cold shock protein [unidentified eubacterium SCB49]
          Length = 63

 Score = 67.7 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KG+GFIT +   ++G D+F+H + +       L EG  V Y  V+ +   
Sbjct: 2  EGTVKFFNESKGFGFITND---DTGKDIFVHITGLNGQ---ALNEGDKVEY--VEEEGRK 53

Query: 64 KYSAENLKLV 73
             A  ++++
Sbjct: 54 GMVAGQVRVI 63


>gi|314982320|gb|EFT26413.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL110PA3]
 gi|315092638|gb|EFT64614.1| cold-shock DNA-binding domain protein [Propionibacterium acnes
          HL110PA4]
          Length = 127

 Score = 67.7 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +++Y+  KG+GF+T +     G DV+++ S V  AG+  L  GQ V +  V+   
Sbjct: 1  MPTGKVRFYDATKGFGFLTKD----GGGDVYVNAS-VLPAGVNTLKPGQKVDFGIVEGRR 55

Query: 62 NGKYSAENLKLVP 74
               A +L++V 
Sbjct: 56 G--EQALSLQIVE 66


>gi|209885160|ref|YP_002289017.1| cold-shock DNA-binding domain protein [Oligotropha
          carboxidovorans OM5]
 gi|209873356|gb|ACI93152.1| cold-shock DNA-binding domain protein [Oligotropha
          carboxidovorans OM5]
          Length = 191

 Score = 67.7 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH + +   G     EG  +  + VQ    
Sbjct: 27 GVIKWFDASKGYGFIVPD---NGLPDILLHVTVLRRDGYQTAYEGARLICECVQRQKG 81



 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  +G+GF++     E   D+F+H   +   G+  L  GQ V    V+   
Sbjct: 116 LERAQVKWFNRLRGFGFVS---CGEGTPDIFVHMETLRRYGMTELRPGQYV---LVRYGP 169

Query: 60  DANGKYSAE 68
            + G  +AE
Sbjct: 170 GSKGLMAAE 178


>gi|240139761|ref|YP_002964238.1| putative tandem cold-shock DNA-binding domain protein
          [Methylobacterium extorquens AM1]
 gi|240009735|gb|ACS40961.1| putative tandem cold-shock DNA-binding domain protein
          [Methylobacterium extorquens AM1]
          Length = 181

 Score = 67.7 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKW++P KG+GFI P+   +   DV LH + +   G    +EG  +  + VQ  A G 
Sbjct: 18 GRIKWFDPSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR-ARGW 73

Query: 65 YSAENLKL 72
           +   L L
Sbjct: 74 QAFRVLSL 81



 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 9/74 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  +G+GF++     +   D+F+H   +   G+  L  G+ V    V+  +
Sbjct: 107 LERAVVKWFNRLRGFGFLSR---GDDTPDIFVHMETLRRYGIAELKPGEEV---MVRYGD 160

Query: 60  DANGKYSAENLKLV 73
            + G  +AE ++LV
Sbjct: 161 GSKGAMAAE-VRLV 173


>gi|284035600|ref|YP_003385530.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
 gi|283814893|gb|ADB36731.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
          Length = 63

 Score = 67.3 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI P+   + G+D+F+H S +    +  + E   V ++  +   
Sbjct: 1  MQTGTVKFFNETKGFGFIKPD---DGGEDIFVHASGL----IDQIRENDKVKFNVERGKK 53

Query: 62 NGKYSAENLKL 72
              +A N+++
Sbjct: 54 G--LNAVNVEM 62


>gi|145596458|ref|YP_001160755.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440]
 gi|145305795|gb|ABP56377.1| cold-shock DNA-binding protein family [Salinispora tropica
          CNB-440]
          Length = 128

 Score = 67.3 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+  KGYGF+T     + G DVFL ++A+  AG+ +L  GQ V +  V +  
Sbjct: 1  MPTGRVKWYDATKGYGFVT----NDEGGDVFLPKAAL-PAGVTDLKGGQRVDFSVVDSRR 55

Query: 62 NGKYSAENLKLVP 74
               A  +KL+ 
Sbjct: 56 G--AQAMGVKLLE 66


>gi|221116100|ref|XP_002159745.1| PREDICTED: similar to Y box binding protein 1 [Hydra
           magnipapillata]
          Length = 308

 Score = 67.3 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+  
Sbjct: 38  GTVKWFNVRNGYGFI---HRNDTQNDVFVHQTAIVKNNPNKYLRSVGDGETVEFDVVEGV 94

Query: 61  ANGKYSAENLK 71
               + A N+ 
Sbjct: 95  KG--HEAINVT 103


>gi|163760322|ref|ZP_02167405.1| putative cold shock protein [Hoeflea phototrophica DFL-43]
 gi|162282721|gb|EDQ33009.1| putative cold shock protein [Hoeflea phototrophica DFL-43]
          Length = 191

 Score = 67.3 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           G IKW++  KG+GFI P+      +DV LH + +   G   + EG  +  +  + +  
Sbjct: 26 TGVIKWFDVAKGFGFIIPD---NGMEDVLLHVTCLRRDGYQTVLEGTRIVCEIQKRERG 81



 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V    V+  N
Sbjct: 116 LERAIVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRYGLAELRPGQVV---LVRFGN 169

Query: 60  DANGKYSAE 68
              G  +AE
Sbjct: 170 GEKGLMAAE 178


>gi|254421024|ref|ZP_05034748.1| 'Cold-shock' DNA-binding domain protein [Brevundimonas sp. BAL3]
 gi|196187201|gb|EDX82177.1| 'Cold-shock' DNA-binding domain protein [Brevundimonas sp. BAL3]
          Length = 174

 Score = 67.3 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 5  GSIKWYNPDKGYGFITPEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G +KW++P KGYGFI P+  T     DV LH S++   G     EG  +  D V+    
Sbjct: 11 GRVKWFDPAKGYGFIVPDDPTLTELRDVLLHISSLRDTGRETADEGAPIVCDCVRRSKG 69



 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KGYGF+  +       D+F+H   +   GL +L  G  V   +  +   G   
Sbjct: 112 VKWFNRTKGYGFVVRDREP---GDIFVHIETLRRCGLDDLVPGDTVQVRFA-SGPKGLVV 167

Query: 67  AE 68
           AE
Sbjct: 168 AE 169


>gi|332669174|ref|YP_004452182.1| cold-shock DNA-binding domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332338212|gb|AEE44795.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC
          484]
          Length = 126

 Score = 67.3 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ ++G+GFI      + G +VFLH SA+  AG+     G  V +    +  
Sbjct: 1  MPTGKVKWFDTERGFGFIA----DDDGGEVFLHASAL-PAGV-TPKPGTKVDFGVA-DGR 53

Query: 62 NGKYSAENLKLVPK 75
           G   A ++K++  
Sbjct: 54 RGPQ-ALSVKILDP 66


>gi|238897472|ref|YP_002923149.1| RNA chaperone, transcription antiterminator [Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465227|gb|ACQ67001.1| RNA chaperone, transcription antiterminator [Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 69

 Score = 67.3 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          + +G +KW++   GYGFI+PE   + G D+++H++A+A+    +L  GQ V +
Sbjct: 3  LKKGKVKWFDKIAGYGFISPE---DGGLDIYVHKAAIANIKDKSLIAGQDVEF 52


>gi|57900030|dbj|BAD88072.1| cold shock domain protein 2-like protein [Oryza sativa Japonica
          Group]
          Length = 221

 Score = 67.3 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K ++   G+ FITP+   +  +D+F+H+S++   G  +L +  ++      +D +G
Sbjct: 7  KGMVKGFDATNGFSFITPD---DGSEDLFIHQSSLKFDGYRSLNDDDVIELSVGSSD-DG 62

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 63 RTKAVDVT 70


>gi|328543603|ref|YP_004303712.1| Cold shock-like protein cspG [polymorphum gilvum SL003B-26A1]
 gi|326413347|gb|ADZ70410.1| Cold shock-like protein cspG [Polymorphum gilvum SL003B-26A1]
          Length = 193

 Score = 67.3 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+IKW++  KGYGFI P+       D+ LH + +   G     EG  V  + + +   G 
Sbjct: 28 GTIKWFDIAKGYGFIVPD---NGLPDILLHVTCLRRDGFQTAYEGARVVCEVL-DKPRGL 83

Query: 65 YSAENLKLVPKSS 77
           +   L +   ++
Sbjct: 84 QAFRILSMDESTA 96



 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--ND 60
            + ++KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ V    V+    
Sbjct: 118 EKATVKWFNRVKGFGFLTQ---GEGTEDIFIHMETLRRFGITELRPGQDV---LVRFGTG 171

Query: 61  ANGKYSAE 68
             G+ +AE
Sbjct: 172 PKGRMAAE 179


>gi|255530444|ref|YP_003090816.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366]
 gi|255343428|gb|ACU02754.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366]
          Length = 63

 Score = 67.3 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFI P        ++F+H S +    + ++ E   V+YD  Q   
Sbjct: 1  MQQGTVKFFNETKGFGFIVP---ANGDSEIFVHSSGL----IDSIRENDSVSYDVEQGKK 53

Query: 62 NGKYSAENLKL 72
              +A N+K+
Sbjct: 54 G--LNAINVKI 62


>gi|3121926|sp|Q48493|CSPA_KLEPN RecName: Full=Major cold shock protein
 gi|1402753|gb|AAC80243.1| major cold-shock protein [Klebsiella pneumoniae]
          Length = 46

 Score = 67.3 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           KG+GFI+P    +   DVF+H SA+ S     L EGQ V++       
Sbjct: 1  SKGFGFISP---KDGSKDVFVHFSAIQSDSFKTLNEGQEVSFTIENGAK 46


>gi|14548150|gb|AAK66807.1|U40238_30 RNA-binding cold-shock protein [uncultured crenarchaeote 4B7]
          Length = 64

 Score = 67.3 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KW+N  KG+GFI  E       D+F+H++ +       + +G  V ++  +++ 
Sbjct: 1  MEIGTVKWFNQTKGFGFIERE---NDDKDLFVHKTEIEGQ----IRDGDKVEFEVGESEK 53

Query: 62 NGKYSAENLKLV 73
              +A  +K V
Sbjct: 54 G--PNAVKVKKV 63


>gi|331009020|gb|EGH89076.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          tabaci ATCC 11528]
          Length = 53

 Score = 67.3 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
          +GFITPE    SG D+F+H  A+   G  +L EGQ VT+  VQ        A+ ++
Sbjct: 1  FGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQKG--MQADEVQ 50


>gi|91218197|ref|ZP_01255145.1| cold shock protein [Psychroflexus torquis ATCC 700755]
 gi|91183655|gb|EAS70050.1| cold shock protein [Psychroflexus torquis ATCC 700755]
          Length = 63

 Score = 67.3 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFIT EG      D F+H S +    +  + EG  V +D  + + 
Sbjct: 1  MNKGTVKFFNDTKGFGFITEEGVD---KDHFVHASGL----IDEIREGDEVEFDLQEGNK 53

Query: 62 NGKYSAENLKLV 73
              +A N++++
Sbjct: 54 G--LNAVNVRVL 63


>gi|12082718|gb|AAG48580.1| cold shock-like protein CspE [Brucella abortus]
          Length = 121

 Score = 67.3 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH +++   G     EG  +  +    D  
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83


>gi|111025370|ref|YP_707790.1| cold shock protein CspA [Rhodococcus jostii RHA1]
 gi|110824349|gb|ABG99632.1| probable cold shock protein CspA [Rhodococcus jostii RHA1]
          Length = 79

 Score = 67.3 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 8/59 (13%)

Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          N +KG+GF  P+G       VF+H S +A  G   L EGQ + Y+  Q        AEN
Sbjct: 25 NGEKGFGFTAPDGG------VFVHFSEIAGRGFKTLDEGQHMEYEVSQGQKG--VQAEN 75


>gi|254469479|ref|ZP_05082884.1| cold shock protein [Pseudovibrio sp. JE062]
 gi|211961314|gb|EEA96509.1| cold shock protein [Pseudovibrio sp. JE062]
          Length = 193

 Score = 67.3 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ V   +  +   GK +
Sbjct: 122 VKWFNRVKGFGFLTR---GEGTEDIFIHMETLRRFGITELRPGQKVQVRFG-DGPKGKMA 177

Query: 67  AEN 69
           AE 
Sbjct: 178 AEV 180



 Score = 65.0 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+IKW++  KGYGF+ PE   +   DV LH + +   G     EG  V  + + N   G 
Sbjct: 28 GTIKWFDIGKGYGFVEPE---DDLPDVLLHVTCLRRDGYQTAYEGARVVCEVL-NRPRGL 83

Query: 65 YS 66
           +
Sbjct: 84 QA 85


>gi|332293275|ref|YP_004431884.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332171361|gb|AEE20616.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 63

 Score = 67.3 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K++N  KG+GFIT EG      D F+H S +    +  + EG  V ++  + + 
Sbjct: 1  MNNGTVKFFNDTKGFGFITEEGVE---KDHFVHISGL----IDEIREGDQVEFELKEGNK 53

Query: 62 NGKYSAENLKLV 73
              +A N++++
Sbjct: 54 G--LNAVNVRVI 63


>gi|218462851|ref|ZP_03502942.1| cold shock protein [Rhizobium etli Kim 5]
 gi|327190806|gb|EGE57874.1| cold shock protein [Rhizobium etli CNPAF512]
          Length = 192

 Score = 67.3 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI P+       DV LH + +   G   + EG  +    +Q    G
Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERG 82

Query: 64 KYS 66
            +
Sbjct: 83 YQA 85



 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V    V+  +
Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170

Query: 60  DANGKYSAE 68
              G  +AE
Sbjct: 171 GEKGLMAAE 179


>gi|6911694|emb|CAB72144.1| cold-shock protein A [Streptococcus thermophilus]
          Length = 45

 Score = 67.3 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           KG+GFIT    +E G D+F H S++ S G  +L E Q V +D      
Sbjct: 1  TKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFDVEVGQR 45


>gi|209549149|ref|YP_002281066.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|209534905|gb|ACI54840.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 192

 Score = 67.3 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI P+       DV LH + +   G   + EG  +    +Q    G
Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERG 82

Query: 64 KYS 66
            +
Sbjct: 83 YQA 85



 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V    V+  +
Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170

Query: 60  DANGKYSAE 68
              G  +AE
Sbjct: 171 GEKGLMAAE 179


>gi|332293257|ref|YP_004431866.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332171343|gb|AEE20598.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 63

 Score = 66.9 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFIT EG      D F+H S +    +  + EG  V +D  + + 
Sbjct: 1  MSKGTVKFFNDTKGFGFITEEGVE---KDHFVHISGL----IDEIREGDEVEFDLKEGNK 53

Query: 62 NGKYSAENLKLV 73
              +A N++++
Sbjct: 54 G--LNAVNVRVI 63


>gi|22901742|gb|AAN10050.1| Y-box protein Ct-p50 [Chironomus tentans]
          Length = 317

 Score = 66.9 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI      ++  D+F+H+SA+        + ++ +G++V +D V  
Sbjct: 31 TGTVKWFNVKSGYGFI---NRNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAG 87

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 88 E-KGSEAANV 96


>gi|118344374|ref|NP_001072010.1| Y-box protein 1/2/3 [Ciona intestinalis]
 gi|70571490|dbj|BAE06759.1| Y-box protein 1/2/3 [Ciona intestinalis]
          Length = 320

 Score = 66.9 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G +KW+N   GYGF+  +   ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 28 GVVKWFNVRNGYGFVNRD---DNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGE 84

Query: 61 ANGKYSAEN 69
               +A  
Sbjct: 85 KGLPEAANV 93


>gi|302876681|ref|YP_003845314.1| cold-shock DNA-binding domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307687356|ref|ZP_07629802.1| cold shock protein [Clostridium cellulovorans 743B]
 gi|302579538|gb|ADL53550.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans
          743B]
          Length = 69

 Score = 66.9 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
          + G +KW++ ++GYGFI    S   G D ++H S V       +L EG+ V YD V+ + 
Sbjct: 4  YTGVVKWFDNERGYGFI----SGNEGMDAYVHHSQVKEKTHNKDLHEGESVKYDMVETNK 59

Query: 62 NGKYSAENLKLV 73
            +  A N++ +
Sbjct: 60 --RPMAINVQKL 69


>gi|17507385|ref|NP_491645.1| Y-box family member (cey-2) [Caenorhabditis elegans]
 gi|13384447|gb|AAK21380.1| C. elegans y-box protein 2, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 267

 Score = 66.9 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KWY+  + YGFI+     +   D+F+H++A+A +      L  L + + V +D V+
Sbjct: 67  QGKVKWYSVLRRYGFISR---NDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVE 123

Query: 59  NDANGKYSAEN 69
              NG  +A  
Sbjct: 124 G-KNGPEAANV 133


>gi|190891571|ref|YP_001978113.1| cold shock protein [Rhizobium etli CIAT 652]
 gi|190696850|gb|ACE90935.1| cold shock protein [Rhizobium etli CIAT 652]
          Length = 192

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI P+       DV LH + +   G   + EG  +    +Q    G
Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERG 82

Query: 64 KYS 66
            +
Sbjct: 83 YQA 85



 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V    V+  +
Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170

Query: 60  DANGKYSAENLKLVPKSSN 78
              G  +AE    +P  ++
Sbjct: 171 GEKGLMAAEIHPDIPSQAS 189


>gi|319955744|ref|YP_004167011.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
 gi|319424404|gb|ADV51513.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
          Length = 63

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFIT +G      D F+H S +    +  + EG +V +D  +   
Sbjct: 1  MSKGTVKFFNDTKGFGFITEDGVD---RDHFVHISGL----IDEIREGDVVEFDLEEGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVL 63


>gi|325293188|ref|YP_004279052.1| cold shock protein [Agrobacterium sp. H13-3]
 gi|325061041|gb|ADY64732.1| cold shock protein [Agrobacterium sp. H13-3]
          Length = 192

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++KW++  KG+GFI P+       DV LH S +   G   + EG  +    +Q    G
Sbjct: 27 TGAVKWFDVAKGFGFIVPD---NGMQDVLLHVSCLRRDGYQTILEGTRI-VALIQRRDRG 82

Query: 64 KYS 66
            +
Sbjct: 83 FQA 85



 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V   +   D 
Sbjct: 117 LERAIVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLVRFGDGD- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMAAE 179


>gi|218680675|ref|ZP_03528572.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894]
          Length = 192

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI P+       DV LH + +   G   + EG  +    +Q    G
Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERG 82

Query: 64 KYS 66
            +
Sbjct: 83 YQA 85



 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V    V+  +
Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170

Query: 60  DANGKYSAE 68
              G  +AE
Sbjct: 171 GEKGLMAAE 179


>gi|258654047|ref|YP_003203203.1| cold-shock DNA-binding domain-containing protein [Nakamurella
          multipartita DSM 44233]
 gi|258557272|gb|ACV80214.1| cold-shock DNA-binding domain protein [Nakamurella multipartita
          DSM 44233]
          Length = 101

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          + RG +K++ PDKG+G IT +   E G D ++H S + S G   L  G +V +DY 
Sbjct: 1  MARGFVKFFKPDKGWGAITSDALPE-GSDAWVHFSVIESDGYRALDAGDVVDFDYE 55


>gi|260061051|ref|YP_003194131.1| cold shock protein [Robiginitalea biformata HTCC2501]
 gi|88785183|gb|EAR16352.1| cold shock protein [Robiginitalea biformata HTCC2501]
          Length = 64

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KGYGFIT +   ++G D+F+H +A+   GL  L +G  V Y   +    G
Sbjct: 2  TGTVKFFNESKGYGFITND---DTGRDIFVHATAL--DGL-VLNQGDKVEYQETEG-RKG 54

Query: 64 KYSAEN 69
            +A+ 
Sbjct: 55 MVAADV 60


>gi|302386647|ref|YP_003822469.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
 gi|302197275|gb|ADL04846.1| cold-shock DNA-binding domain protein [Clostridium
          saccharolyticum WM1]
          Length = 69

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
          + G +KW++ +KGYGF+    ST  G DVF+H S V       +L EG+ V +D  +++ 
Sbjct: 4  YTGVVKWFDNEKGYGFL----STSEGQDVFVHHSQVKEKTHNKDLHEGESVNFDVRKDEK 59

Query: 62 NGKYSAENLKLV 73
               A N++ +
Sbjct: 60 G--LCALNVQKI 69


>gi|124267217|ref|YP_001021221.1| cold shock DNA-binding domain-containing protein [Methylibium
          petroleiphilum PM1]
 gi|124259992|gb|ABM94986.1| cold-shock DNA-binding domain [Methylibium petroleiphilum PM1]
          Length = 203

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQN 59
          M   G +K +N ++G+GFI P      G D+F+H  A  +  G   +  GQ VT++ V+ 
Sbjct: 1  MRLDGKLKSWNDERGFGFIDP---VHGGQDIFVHIKAFPSGTGRPTV--GQAVTFE-VEL 54

Query: 60 DANGKYSAENLK 71
            NGK  A +++
Sbjct: 55 GPNGKKRARSVQ 66


>gi|118344436|ref|NP_001072039.1| Y-box protein 1/2/3 [Ciona intestinalis]
 gi|70571495|dbj|BAE06760.1| Y-box protein 1/2/3 [Ciona intestinalis]
          Length = 273

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G +KW+N   GYGF+  +   ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 28 GVVKWFNVRNGYGFVNRD---DNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGE 84

Query: 61 ANGKYSAEN 69
               +A  
Sbjct: 85 KGLPEAANV 93


>gi|255084065|ref|XP_002508607.1| predicted protein [Micromonas sp. RCC299]
 gi|226523884|gb|ACO69865.1| predicted protein [Micromonas sp. RCC299]
          Length = 303

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 14  KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
           +G+GFITP+   + G+D+F H S++    +  L EG  V YD   +D  GK  AE + 
Sbjct: 84  RGFGFITPD---QGGEDLFCHFSSITDGNM--LNEGARVEYDESFDDRKGKPRAERVT 136


>gi|241204473|ref|YP_002975569.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240858363|gb|ACS56030.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 192

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI P+       DV LH + +   G   + EG  +    +Q    G
Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERG 82

Query: 64 KYS 66
            +
Sbjct: 83 YQA 85



 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V    V+  +
Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170

Query: 60  DANGKYSAE 68
              G  +AE
Sbjct: 171 GEKGLMAAE 179


>gi|254503970|ref|ZP_05116121.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
          DFL-11]
 gi|222440041|gb|EEE46720.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii
          DFL-11]
          Length = 193

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+IKW++  KGYGFI P+       D+ LH + +   G     EG  V  + + +   G 
Sbjct: 28 GTIKWFDVGKGYGFIVPDSGE---TDILLHVTCLRRDGFQTAYEGARVVCEVL-DRPRGL 83

Query: 65 YSAENLKLVPKSS 77
           +   L +   ++
Sbjct: 84 QAFRILSMDESTA 96



 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--ND 60
              ++KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ V    V+    
Sbjct: 118 ETATVKWFNRVKGFGFLTQ---GEGTEDIFIHMETLRRYGITELRPGQEV---LVRFGTG 171

Query: 61  ANGKYSAE 68
             G+ +AE
Sbjct: 172 PKGRMAAE 179


>gi|225011297|ref|ZP_03701753.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
          MS024-3C]
 gi|225004553|gb|EEG42519.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
          MS024-3C]
          Length = 63

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N  KGYGFIT +   ESG D F+H +A+       + EG  V+Y+  +++   
Sbjct: 2  TGTVKFFNGSKGYGFITND---ESGKDTFVHATALNGL---QINEGDKVSYEEQESEKG- 54

Query: 64 KYSAENLKLV 73
            +A ++ L+
Sbjct: 55 -MTAVDVALL 63


>gi|163852424|ref|YP_001640467.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
 gi|163664029|gb|ABY31396.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1]
          Length = 202

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KG+GFI P+   +   DV LH + +   G    +EG  +  + VQ  A G 
Sbjct: 39  GRIKWFDVSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR-ARGW 94

Query: 65  YSAENLKL 72
            +   + L
Sbjct: 95  QAFRVISL 102



 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 9/74 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  +G+GF++     +   D+F+H   +   G+  L  G+ V    V+  +
Sbjct: 128 LERAVVKWFNRLRGFGFLSR---GDDTPDIFVHMETLRRYGIAELKPGEEV---MVRYGD 181

Query: 60  DANGKYSAENLKLV 73
            + G  +AE ++LV
Sbjct: 182 GSKGAMAAE-VRLV 194


>gi|225010634|ref|ZP_03701104.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
          MS024-3C]
 gi|225005187|gb|EEG43139.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
          MS024-3C]
          Length = 63

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFI+ EG+   G + F+H S +    +  + EG  V ++  Q   
Sbjct: 1  MNKGTVKFFNDTKGFGFISEEGA---GKEHFVHISGL----IDEIREGDEVEFELEQGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|298248814|ref|ZP_06972619.1| cold-shock DNA-binding domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297551473|gb|EFH85339.1| cold-shock DNA-binding domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 278

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G ++W++P+ G G I  E   E+G+++F H +A+   G   +  G  V ++ V+  A  
Sbjct: 212 QGVVRWFDPNAGIGIIVRE---EAGEEIFFHFTALPGQGYRTIRAGVPVQFEIVEGRAG- 267

Query: 64  KYSAENLK 71
             +A N++
Sbjct: 268 -LAARNIQ 274


>gi|91081961|ref|XP_966594.1| PREDICTED: similar to Y-box binding protein isoform 1 [Tribolium
          castaneum]
 gi|270007364|gb|EFA03812.1| hypothetical protein TcasGA2_TC013925 [Tribolium castaneum]
          Length = 297

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI      ++ +DVF+H+SA+        + ++ +G++V +  V  
Sbjct: 30 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVVVG 86

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 87 E-KGNEAANV 95


>gi|17508335|ref|NP_491631.1| Y-box family member (cey-3) [Caenorhabditis elegans]
 gi|1707071|gb|AAB37828.1| C.elegans y-box protein 3 [Caenorhabditis elegans]
          Length = 265

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KWY+  + YGFI+    ++   DVF+H++A++ +      L  L + + V +D V 
Sbjct: 65  QGKVKWYSVLRRYGFISR---SDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLV- 120

Query: 59  NDANGKYSAEN 69
           +  NG  +A  
Sbjct: 121 DGKNGPEAANV 131


>gi|17980576|gb|AAL50653.1| major cold shock protein [Lactobacillus crispatus]
          Length = 50

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          G GFITP+   +   DVF+H SA+   G  +L EGQ V++   ++ A G   A  
Sbjct: 1  GXGFITPD---DGSKDVFVHFSAI--NGYKSLDEGQKVSFTI-ESGAKGPAXANV 49


>gi|332187120|ref|ZP_08388860.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
 gi|332012820|gb|EGI54885.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17]
          Length = 189

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  +G+GF   +  T    DV LH + + S G  +L EG  V    V+    G 
Sbjct: 25 GVVKWFDVTRGFGFAVADDLTYG--DVLLHFTVLQSHGRRSLPEGARVEMIAVERG-RGY 81

Query: 65 YSAENLKL 72
           + E + +
Sbjct: 82 QAREVVSI 89



 Score = 56.9 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KGYGF+  +     G D+F+H   +   G+  +  GQ +    V +   G  +
Sbjct: 125 VKWFNRLKGYGFLLRDS---DGADIFVHMETLRRGGIVEVEPGQPLMARIV-DGPKGPLA 180

Query: 67  AENLKLVPKSS 77
              + + P+ +
Sbjct: 181 ---VAVTPRGA 188


>gi|149279957|ref|ZP_01886083.1| cold shock protein [Pedobacter sp. BAL39]
 gi|149229337|gb|EDM34730.1| cold shock protein [Pedobacter sp. BAL39]
          Length = 63

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI P        ++F+H S +    L ++ E   VTYD  Q   
Sbjct: 1  MQEGTVKFFNETKGFGFIVP---ANGDSEIFVHSSGL----LDSIRENDSVTYDVEQGKK 53

Query: 62 NGKYSAENLKL 72
              +A N+K+
Sbjct: 54 G--LNAINVKI 62


>gi|170738730|ref|YP_001767385.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168193004|gb|ACA14951.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46]
          Length = 204

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KG+GFI P+       DV LH + +   G  + +EG  +  + VQ  A G 
Sbjct: 41  GRIKWFDVAKGFGFIVPDS---GAPDVLLHVTCLRRDGHQSASEGARIVVEAVQR-ARGW 96

Query: 65  YSAENLKL 72
            +   + L
Sbjct: 97  QAFRVVSL 104



 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           +    +KW+N  +G+GF++     E   D+F+H   +   G+  L  G+ V    V+  +
Sbjct: 130 LETAVVKWFNRLRGFGFLSR---GEGTPDIFVHMETLRRYGIAELKPGERV---MVRYGD 183

Query: 60  DANGKYSAEN 69
            + G  +AE 
Sbjct: 184 GSKGLMAAEV 193


>gi|256061344|ref|ZP_05451488.1| cold-shock family protein [Brucella neotomae 5K33]
 gi|261325345|ref|ZP_05964542.1| cold-shock DNA-binding domain-containing protein [Brucella
          neotomae 5K33]
 gi|261301325|gb|EEY04822.1| cold-shock DNA-binding domain-containing protein [Brucella
          neotomae 5K33]
          Length = 193

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH +++   G     EG  V  +    D  
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARVVCEVRHGDRG 83



 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +   +  G  +
Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGE-KGLMA 178

Query: 67  AE 68
           AE
Sbjct: 179 AE 180


>gi|305665006|ref|YP_003861293.1| cold shock protein-like CspA family [Maribacter sp. HTCC2170]
 gi|88707420|gb|EAQ99665.1| cold shock protein-like CspA family [Maribacter sp. HTCC2170]
          Length = 63

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFIT EG      D F+H S +       + EG  V +D  + + 
Sbjct: 1  MNKGTVKFFNNAKGFGFITEEGVD---KDHFVHVSGLVDE----IREGDEVEFDLQEGNK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|217976738|ref|YP_002360885.1| cold-shock DNA-binding domain protein [Methylocella silvestris
          BL2]
 gi|217502114|gb|ACK49523.1| cold-shock DNA-binding domain protein [Methylocella silvestris
          BL2]
          Length = 189

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFITP+   + G DV LH + +   G     EG  +  +  +    
Sbjct: 28 GEIKWFDVAKGYGFITPD---DGGPDVLLHVTILRRDGYAAAHEGARIVCEAARRAKG 82



 Score = 58.8 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL--VTYDYVQNDANGK 64
           +KW+N  KG+GF+T     +  +D+F+H   +   G+  L  G+   V +    +   G 
Sbjct: 120 VKWFNRMKGFGFLTR---GDGTEDIFIHMETLRHYGIGELRPGESLLVRFG---DGPKGL 173

Query: 65  YSAEN 69
            +AE 
Sbjct: 174 MAAEV 178


>gi|237785049|ref|YP_002905754.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757961|gb|ACR17211.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
          Length = 130

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++PDKG+GF+T        DDVF+  + V   G+  L +GQ + Y++    A
Sbjct: 1  MPIGRVKWFDPDKGFGFVT----NPGDDDVFVG-TQVLPDGVEELHQGQKIEYEF----A 51

Query: 62 NGKYSAENLKL 72
           G+   + L++
Sbjct: 52 AGRKGPQVLRI 62


>gi|297243561|ref|ZP_06927492.1| cold shock protein [Gardnerella vaginalis AMD]
 gi|296888312|gb|EFH27053.1| cold shock protein [Gardnerella vaginalis AMD]
          Length = 129

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++WY+  KGYGFI  +     G DVFL  +A+    +  L +G  V +  ++   
Sbjct: 1  MPNGRVRWYDTQKGYGFIVGD----DGKDVFLPAAALPVT-VKTLHKGTRVEFSVIEGRK 55

Query: 62 NGKYSAENL 70
            +    N+
Sbjct: 56 GPQAMGLNV 64


>gi|320007562|gb|ADW02412.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus
          ATCC 33331]
          Length = 70

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G+++ ++ +KGYG+I P   +  G ++ +H SA+  A    L  GQ V++D VQ   
Sbjct: 1  MAEGTVQVFSAEKGYGYIRP---STGGPEIIVHFSAIVEACPVGLVAGQTVSFDIVQR-R 56

Query: 62 NGKYSAENLKL 72
           G   AE +++
Sbjct: 57 RGPE-AERVQI 66


>gi|218531182|ref|YP_002421998.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|254562173|ref|YP_003069268.1| tandem cold-shock DNA-binding domain-containing protein
          [Methylobacterium extorquens DM4]
 gi|218523485|gb|ACK84070.1| cold-shock DNA-binding domain protein [Methylobacterium
          chloromethanicum CM4]
 gi|254269451|emb|CAX25417.1| putative tandem cold-shock DNA-binding domain protein
          [Methylobacterium extorquens DM4]
          Length = 181

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKW++  KG+GFI P+   +   DV LH + +   G    +EG  +  + VQ  A G 
Sbjct: 18 GRIKWFDVSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR-ARGW 73

Query: 65 YSAENLKL 72
           +   L L
Sbjct: 74 QAFRVLSL 81



 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 9/74 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  +G+GF++     +   D+F+H   +   G+  L  G+ V    V+  +
Sbjct: 107 LERAVVKWFNRLRGFGFLSR---GDDTPDIFVHMETLRRYGIAELKPGEEV---MVRYGD 160

Query: 60  DANGKYSAENLKLV 73
            + G  +AE ++LV
Sbjct: 161 GSKGAMAAE-VRLV 173


>gi|312083329|ref|XP_003143816.1| hypothetical protein LOAG_08235 [Loa loa]
 gi|307761020|gb|EFO20254.1| hypothetical protein LOAG_08235 [Loa loa]
          Length = 310

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KWY+    YGFI  +   + G+DVF+H++A+  +      L  L +G+ V +D V+
Sbjct: 77  KGRVKWYSVRFHYGFIARD---DKGNDVFVHQTAITKSRIIKYYLRTLGDGEEVLFDIVE 133

Query: 59  NDANGKYSAEN 69
               G  +A  
Sbjct: 134 G-KQGPEAANV 143


>gi|332261688|ref|XP_003279897.1| PREDICTED: protein lin-28 homolog A-like [Nomascus leucogenys]
          Length = 208

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGF---ITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF   I   G       DVF+H+S +   G ++L EG+ V + + ++ 
Sbjct: 42  GICKWFNVRMGFGFLSMIARAGVALDPPVDVFVHQSKLHMEGFWSLKEGEAVEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|296448672|ref|ZP_06890536.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
           OB3b]
 gi|296253819|gb|EFH00982.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium
           OB3b]
          Length = 195

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G+IKW++  KGYGF+ P+   + G D+ LH + +  +G     EG  V  +  Q    G 
Sbjct: 32  GAIKWFDVSKGYGFVVPD---DGGADILLHVTTLRRSGFQTAYEGARVVCE-AQKRPKGM 87

Query: 65  YSAENLKLVPKSS 77
                + +   ++
Sbjct: 88  QVFRVVAIDESTA 100



 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64
           +KW+N  KG+GF+T     +  DD+FLH   V   GL  L  G  V    V+  +   G 
Sbjct: 126 VKWFNRVKGFGFLTR---GDGTDDIFLHMETVRRYGLAELKPGDSV---LVRYGDGPKGL 179

Query: 65  YSAEN 69
            + E 
Sbjct: 180 MATEV 184


>gi|298291596|ref|YP_003693535.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
 gi|296928107|gb|ADH88916.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506]
          Length = 199

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G+IKW++  KGYGF+ P+G    G DV LH + +   G     EG  +  + V  +  
Sbjct: 36 GTIKWFDVSKGYGFVVPDG---GGSDVLLHVTCLRRGGFNTAQEGARIVCEAVARERG 90



 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64
           +KW+N  +G+GF++     E  +D+F+H   +   GL  L  GQ+V    V+      G 
Sbjct: 130 VKWFNRLRGFGFLSR---GEGTEDIFVHMETLRRHGLTELRPGQMV---LVRFGPGPKGL 183

Query: 65  YSAEN 69
            +AE 
Sbjct: 184 MAAEV 188


>gi|224074255|ref|XP_002304323.1| predicted protein [Populus trichocarpa]
 gi|222841755|gb|EEE79302.1| predicted protein [Populus trichocarpa]
          Length = 225

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62
           G +  ++  KG+GFI P+       D+F+H SA+ S  G   L E  +V +  +  +  
Sbjct: 4  TGRVVRFSDKKGFGFIKPDVGD---KDLFVHHSAIKSDGGYRTLYEDDVVEFTILLTEDK 60


>gi|331240856|ref|XP_003333078.1| hypothetical protein PGTG_14864 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309312068|gb|EFP88659.1| hypothetical protein PGTG_14864 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 367

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 2   VHRGSIKWYNPDKGYGFIT-------PEGSTESGDDVFLHRSAVAS--AGLFNLTEGQLV 52
              G  K++N  KG+GFI        P  + + G D+F+H S + S  A   +L +G++V
Sbjct: 70  RRTGVCKFFNVGKGFGFIKDSRPEELPVLTGDPGTDIFVHYSCIVSCDAPYKSLLDGEVV 129

Query: 53  TYDYVQNDAN 62
            Y   +++  
Sbjct: 130 EYYLGRSNKG 139


>gi|238062313|ref|ZP_04607022.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
 gi|237884124|gb|EEP72952.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149]
          Length = 128

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+  KGYGF+T    ++ G DVFL + A+  AG+ +L  GQ V +  V +  
Sbjct: 1  MPTGRVKWYDAAKGYGFVT----SDEGGDVFLPKGAL-PAGVTDLKGGQRVDFSVVDSRR 55

Query: 62 NGKYSAENLKLVP 74
               A  +KL+ 
Sbjct: 56 G--AQAMGVKLLE 66


>gi|110598176|ref|ZP_01386453.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
 gi|110340190|gb|EAT58688.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM
          13031]
          Length = 72

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
          + +  +KW++  KGYGFI    + + G+D+F+H S + S      L +   V ++   +D
Sbjct: 1  MAKSVVKWFDGKKGYGFIV---NPDGGEDIFVHYSTIDSVHRFKFLNQDAEVDFEL--DD 55

Query: 61 ANGKYSAENLKLVPKSS 77
          +  +  A  +K +  +S
Sbjct: 56 SKQRLQARYVKEISIAS 72


>gi|299133814|ref|ZP_07027008.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
 gi|298591650|gb|EFI51851.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2]
          Length = 240

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           G IKW++  KGYGFI P+       D+ LH + +   G     EG  +  + VQ    
Sbjct: 76  GVIKWFDASKGYGFIVPD---NGWPDILLHVTVLRRDGFQTAYEGARLVCECVQRQKG 130



 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  +G+GF++     E   D+F+H   +   G+  L  GQ   +  V+   
Sbjct: 165 LERAQVKWFNRLRGFGFVS---CGEGTPDIFVHMETLRRYGMTELRPGQ---FVLVRYGP 218

Query: 60  DANGKYSAE 68
            + G  +AE
Sbjct: 219 GSKGMMAAE 227


>gi|163839253|ref|YP_001623658.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
 gi|162952729|gb|ABY22244.1| cold shock protein [Renibacterium salmoninarum ATCC 33209]
          Length = 119

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ DKG+GF+T    ++ G +VFLH +A+  AG+  +  G  + +      A
Sbjct: 1  MPTGKVKWFDNDKGFGFLT----SDEGQEVFLHANAL-PAGVKEIKVGTRMEFGV----A 51

Query: 62 NGKYSAENLKL 72
          +GK  A+ L +
Sbjct: 52 DGKKGAQALSV 62


>gi|1402735|gb|AAC80235.1| major cold-shock protein [Bacillus atrophaeus]
          Length = 45

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           KG GFI  E     GDDVF+H SA+   G  +L EG+ V++D  Q   
Sbjct: 1  KKGSGFIEREA----GDDVFVHFSAIQGEGFKSLEEGESVSFDVEQGQR 45


>gi|15889107|ref|NP_354788.1| cold shock protein [Agrobacterium tumefaciens str. C58]
 gi|15156913|gb|AAK87573.1| cold shock protein [Agrobacterium tumefaciens str. C58]
          Length = 192

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI P+       DV LH S +   G   + EG  +    +Q    G
Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGTQDVLLHVSCLRRDGYQTILEGTRI-VALIQRRDRG 82



 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V   Y   D 
Sbjct: 117 LERAIVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLVRYGDGD- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMAAE 179


>gi|238763346|ref|ZP_04624310.1| Cold shock-like protein [Yersinia kristensenii ATCC 33638]
 gi|238698445|gb|EEP91198.1| Cold shock-like protein [Yersinia kristensenii ATCC 33638]
          Length = 62

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  +GYGFI+P    +   DV++ ++A+A+    +L+EGQ V +   ++  +G  +
Sbjct: 1  MKWFNQSEGYGFISPH---DGSLDVYVSKTAIANTKNKSLSEGQDVEFSTYRS-IHGPSA 56

Query: 67 AENL 70
          A+ +
Sbjct: 57 ADVI 60


>gi|91081963|ref|XP_975913.1| PREDICTED: similar to Y-box binding protein isoform 2 [Tribolium
          castaneum]
          Length = 286

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G++KW+N   GYGFI      ++ +DVF+H+SA+        + ++ +G++V +  V  
Sbjct: 30 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVVVG 86

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 87 E-KGNEAANV 95


>gi|330465294|ref|YP_004403037.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
 gi|328808265|gb|AEB42437.1| cold-shock DNA-binding domain-containing protein [Verrucosispora
          maris AB-18-032]
          Length = 128

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+  KGYGF+T    ++ G DVFL ++A+  AG+ +L  GQ + +  V +  
Sbjct: 1  MPTGRVKWYDATKGYGFVT----SDEGGDVFLPKAAL-PAGVTDLKGGQRIDFSVVDSRR 55

Query: 62 NGKYSAENLKLVP 74
               A  +KL+ 
Sbjct: 56 G--TQAMGVKLLE 66


>gi|315654218|ref|ZP_07907126.1| cold-shock domain family protein [Mobiluncus curtisii ATCC 51333]
 gi|315657883|ref|ZP_07910763.1| cold-shock domain family protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|315491253|gb|EFU80870.1| cold-shock domain family protein [Mobiluncus curtisii ATCC 51333]
 gi|315491680|gb|EFU81291.1| cold-shock domain family protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 125

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+  KG+GF+        G++VFLH SA+    + +L  G  V Y  V +  
Sbjct: 1  MPSGKVKWYDAVKGFGFVA----GADGEEVFLHASAL-PENVVDLHPGTKVEYSVV-DGK 54

Query: 62 NGKYSAENLKLVPK 75
           G+  A N+ +V K
Sbjct: 55 RGRQ-AMNVTVVEK 67


>gi|227821970|ref|YP_002825941.1| cold shock protein [Sinorhizobium fredii NGR234]
 gi|227340970|gb|ACP25188.1| cold shock protein [Sinorhizobium fredii NGR234]
          Length = 192

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G IKW++  KG+GFI P+       DV LH + +   G   + EG  V    +Q    G
Sbjct: 27 TGVIKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTVLEGARV-VALIQKRERG 82

Query: 64 KYS 66
            +
Sbjct: 83 YQA 85



 Score = 65.0 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V   +  +   G  +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLCRFG-DGEKGLMA 177

Query: 67  AE 68
           AE
Sbjct: 178 AE 179


>gi|15965471|ref|NP_385824.1| putative cold shock transcription regulator protein
          [Sinorhizobium meliloti 1021]
 gi|307302592|ref|ZP_07582348.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
 gi|307318438|ref|ZP_07597872.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|15074652|emb|CAC46297.1| Putative cold shock transcription regulator [Sinorhizobium
          meliloti 1021]
 gi|306895778|gb|EFN26530.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          AK83]
 gi|306902956|gb|EFN33547.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti
          BL225C]
          Length = 192

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G IKW++  KG+GFI P+       DV LH + +   G   + EG  V    +Q    G
Sbjct: 27 TGVIKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTVLEGARV-VALIQKRDRG 82

Query: 64 KYS 66
            +
Sbjct: 83 YQA 85



 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V   +  +   G  +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLCRFG-DGEKGLMA 177

Query: 67  AE 68
           AE
Sbjct: 178 AE 179


>gi|88802865|ref|ZP_01118392.1| cold shock protein [Polaribacter irgensii 23-P]
 gi|88781723|gb|EAR12901.1| cold shock protein [Polaribacter irgensii 23-P]
          Length = 63

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFIT EG      D F+H S +       + EG  V +D  + + 
Sbjct: 1  MSKGTVKFFNESKGFGFITEEGVD---KDHFVHISGLVDE----IREGDQVEFDLQEGNK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|300119946|gb|ADJ67998.1| Y-box protein [Samia ricini]
          Length = 264

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        + ++ +G+ V +  V  +
Sbjct: 39  GTVKWFNVKSGYGFI---NRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 95

Query: 61  ANGKYSAEN 69
             G  +A  
Sbjct: 96  -KGYEAARV 103


>gi|283783195|ref|YP_003373949.1| cold-shock DNA-binding domain protein [Gardnerella vaginalis
          409-05]
 gi|283441802|gb|ADB14268.1| cold-shock DNA-binding domain protein [Gardnerella vaginalis
          409-05]
          Length = 129

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++WY+  KGYGFI  +     G DVFL  +A+    + +L +G  V +  ++   
Sbjct: 1  MPNGRVRWYDTQKGYGFIVGD----DGKDVFLPAAALPVT-VKSLHKGTRVEFSVIEGRK 55

Query: 62 NGKYSAENL 70
            +    N+
Sbjct: 56 GPQAMGLNV 64


>gi|298345620|ref|YP_003718307.1| cold-shock DNA-binding domain-containing protein [Mobiluncus
          curtisii ATCC 43063]
 gi|304390691|ref|ZP_07372644.1| cold-shock domain family protein [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|298235681|gb|ADI66813.1| cold-shock DNA-binding domain protein [Mobiluncus curtisii ATCC
          43063]
 gi|304326447|gb|EFL93692.1| cold-shock domain family protein [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
          Length = 125

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+  KG+GF+        G++VFLH SA+    + +L  G  V Y  V +  
Sbjct: 1  MPSGKVKWYDAVKGFGFVA----GADGEEVFLHASAL-PENVVDLHPGTKVEYSVV-DGK 54

Query: 62 NGKYSAENLKLVPK 75
           G+  A N+ +V K
Sbjct: 55 RGRQ-AMNVTVVEK 67


>gi|325287795|ref|YP_004263585.1| cold-shock DNA-binding domain-containing protein [Cellulophaga
          lytica DSM 7489]
 gi|324323249|gb|ADY30714.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM
          7489]
          Length = 63

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFIT EG      D F+H S +       + EG +V YD  + + 
Sbjct: 1  MSKGTVKFFNDTKGFGFITEEGVE---KDHFVHISGLVDE----IREGDVVEYDLQEGNK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|319955388|ref|YP_004166655.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
 gi|319424048|gb|ADV51157.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
          14237]
          Length = 63

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFIT EG      D F+H S +    +  + EG +V +D  + + 
Sbjct: 1  MSKGTVKFFNDAKGFGFITEEGVE---KDHFVHISGL----IDEVREGDVVEFDLQEGNK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|297677568|ref|XP_002816670.1| PREDICTED: protein lin-28 homolog A-like [Pongo abelii]
          Length = 277

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF++         +S  DVF+H+S +      +L EG+ V + + ++ 
Sbjct: 110 GICKWFNVRMGFGFLSMTARAGVTLDSPVDVFVHQSKLHMERFRSLKEGEAVEFTFKKSA 169

Query: 61  AN 62
             
Sbjct: 170 KG 171


>gi|150396662|ref|YP_001327129.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|150028177|gb|ABR60294.1| putative cold-shock DNA-binding domain protein [Sinorhizobium
          medicae WSM419]
          Length = 192

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G IKW++  KG+GFI P+       DV LH + +   G   + EG  V    +Q    G
Sbjct: 27 TGVIKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTVLEGARV-VALIQKRDRG 82

Query: 64 KYS 66
            +
Sbjct: 83 YQA 85



 Score = 65.0 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V   +  +   G  +
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLCRFG-DGEKGLMA 177

Query: 67  AE 68
           AE
Sbjct: 178 AE 179


>gi|163788488|ref|ZP_02182934.1| cold shock protein [Flavobacteriales bacterium ALC-1]
 gi|159876808|gb|EDP70866.1| cold shock protein [Flavobacteriales bacterium ALC-1]
          Length = 63

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFIT EGS       F+H S +       + EG  V YD  +   
Sbjct: 1  MSTGTVKFFNDAKGFGFITEEGSNTEH---FVHISGLVDE----IREGDNVEYDLTEGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAINVKVI 63


>gi|116251862|ref|YP_767700.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256510|emb|CAK07594.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae
          3841]
          Length = 192

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KG+GFI P+       DV LH + +   G   + EG  +    +Q    G
Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGLQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERG 82

Query: 64 KYS 66
            +
Sbjct: 83 YQA 85



 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V    V+  +
Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170

Query: 60  DANGKYSAE 68
              G  +AE
Sbjct: 171 GEKGLMAAE 179


>gi|91977002|ref|YP_569661.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
           BisB5]
 gi|91683458|gb|ABE39760.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
           BisB5]
          Length = 219

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  + VQ  A G 
Sbjct: 55  GVIKWFDASKGYGFIVPD---NGAADVLLHVTVLRRDGYQTAYEGARIVVECVQR-AKGY 110

Query: 65  YSAENLKLVPKSS 77
            +   + +   ++
Sbjct: 111 QAFRVVSMDESTA 123



 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ  LV +     
Sbjct: 144 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFG---P 197

Query: 60  DANGKYSAE 68
            + G  +AE
Sbjct: 198 GSKGMMAAE 206


>gi|222085261|ref|YP_002543791.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221722709|gb|ACM25865.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 68

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K ++ +KGYGFI P   T+    +F+H   V  +GL  L +GQ + ++  Q+  
Sbjct: 1  MFNGIVKNFDLEKGYGFIQP---TDGSVAIFVHAKIVVKSGLETLKKGQKLIFEIEQDGM 57

Query: 62 NGKYSAENLKL 72
           G+ S   L+L
Sbjct: 58 -GRSSISKLRL 67


>gi|330993460|ref|ZP_08317395.1| Cold shock-like protein CspA [Gluconacetobacter sp. SXCC-1]
 gi|329759490|gb|EGG75999.1| Cold shock-like protein CspA [Gluconacetobacter sp. SXCC-1]
          Length = 49

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 25 TESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
           + G DVF+H +AV +AGL  L E Q V+YD       GK +A NLK +
Sbjct: 3  DDGGKDVFVHITAVQAAGLRGLNEDQAVSYDIAME--RGKAAATNLKAL 49


>gi|1483311|emb|CAA68079.1| Y-box protein [Dugesia japonica]
          Length = 266

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G +KW+N  +GYGF+    + E   D+F+H+SA+  +       ++ EG+ + +D V+ 
Sbjct: 30 TGKVKWFNVKRGYGFVCRNDNQE---DIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVKG 86

Query: 60 DANGKYSAEN 69
           A G  +A  
Sbjct: 87 -AKGNEAANV 95


>gi|23007963|ref|ZP_00049605.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum
           MS-1]
          Length = 202

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KG+GFI P+   +   DV LH + +   G    +EG  +  + VQ  A G 
Sbjct: 39  GRIKWFDVSKGFGFILPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR-ARGW 94

Query: 65  YSAENLKL 72
            +   + L
Sbjct: 95  QAHRVISL 102



 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 9/69 (13%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64
           +KW+N  +G+GF++     +   D+F+H   +   G+  L  G+ V    V+  + + G 
Sbjct: 133 VKWFNRLRGFGFLSR---GDGTPDIFVHMETLRRYGIAELKPGEQV---LVRYGDGSKGA 186

Query: 65  YSAENLKLV 73
            +AE ++LV
Sbjct: 187 MAAE-VRLV 194


>gi|69246243|ref|ZP_00603856.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
 gi|68195344|gb|EAN09793.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
          Length = 35

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 4/39 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
          +  G++KW+N +KG+GFI+ E     G DVF+H SA+  
Sbjct: 1  MENGTVKWFNAEKGFGFISRE----DGSDVFVHFSAIPR 35


>gi|269796415|ref|YP_003315870.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
          10542]
 gi|269098600|gb|ACZ23036.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM
          10542]
          Length = 127

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K+++ ++G+GFI     ++ G+ VFLH SA+   G+     G  V +    +  
Sbjct: 1  MPTGKVKFFDTERGFGFIA----SDDGEQVFLHASAL-PEGVTAPKPGAKVEFGVA-DGR 54

Query: 62 NGKYSAENLKLVP 74
           G  +     L P
Sbjct: 55 KGPQALSVTFLDP 67


>gi|213648751|ref|ZP_03378804.1| putative cold-shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
          Length = 39

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 3/37 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
           G +KW+NP+KG+GFITP    +   DVF+H SA+ S
Sbjct: 6  TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQS 39


>gi|13470456|ref|NP_102024.1| cold shock protein [Mesorhizobium loti MAFF303099]
 gi|14021197|dbj|BAB47810.1| cold shock protein [Mesorhizobium loti MAFF303099]
          Length = 181

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G+IKW++  KGYGFI P+       D+ LH + +   G     EG  V     Q D  
Sbjct: 17 GAIKWFDVAKGYGFILPDDGVSG--DILLHVTCLRRDGFQTALEGARVVCLVKQGDRG 72



 Score = 65.4 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   + + D 
Sbjct: 107 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRYGITELRPGQVVLVRFGRGD- 162

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 163 KGLMAAE 169


>gi|260460741|ref|ZP_05808991.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033318|gb|EEW34579.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 198

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   + + D 
Sbjct: 124 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRYGITELRPGQVVLVRFGRGD- 179

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 180 KGLMAAE 186



 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+IKW++  KGYGFI P+       D+ LH + +   G     EG  V    V+    G 
Sbjct: 34 GAIKWFDVAKGYGFILPDDGISG--DILLHVTCLRRDGFQTALEGARVVC-LVKQGERGL 90

Query: 65 YSAENLKL 72
           +   L +
Sbjct: 91 QAFRVLSM 98


>gi|188591387|ref|YP_001795986.1| conserved hypothetical protein, DUF1294; Cold shock protein
          domain [Cupriavidus taiwanensis]
 gi|170938782|emb|CAP63775.1| conserved hypothetical protein, DUF1294; Cold shock protein
          domain [Cupriavidus taiwanensis LMG 19424]
          Length = 190

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K ++ DKG+GFI     T    DVF H +A+ +  +   T G  V+++  +  
Sbjct: 1  MRKAGRVKTWHADKGFGFINVHADT----DVFFHITALQTRAV-TPTSGDRVSFELGKG- 54

Query: 61 ANGKYSAENLKLV 73
           +G+  A N+ +V
Sbjct: 55 RDGRPQALNVAIV 67


>gi|308806684|ref|XP_003080653.1| glycogen debranching enzyme (ISS) [Ostreococcus tauri]
 gi|116059114|emb|CAL54821.1| glycogen debranching enzyme (ISS) [Ostreococcus tauri]
          Length = 141

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 12/71 (16%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE------GQLVTYDYVQND 60
           + W+N  +GYG++ P    +  +DVF+H+S +   G  ++ E      G  + ++   ++
Sbjct: 44  VTWFNCVRGYGYVRPH---DGSEDVFVHQSELQMDGFRSVWEVRLQQAGDEIEFELDDDE 100

Query: 61  ANGKYSAENLK 71
                 A+N+ 
Sbjct: 101 RR---RAKNVT 108


>gi|85717340|ref|ZP_01048292.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
 gi|85695815|gb|EAQ33721.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A]
          Length = 202

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       DV LH + +   G     EG  +  D VQ    
Sbjct: 38 GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVCDCVQRAKG 92



 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  +G+GF+T     +   D+F+H   +   G+  L  GQ   +  V+   
Sbjct: 127 LERAQVKWFNRLRGFGFLTR---GDGTPDIFVHMETLRRFGITELRPGQ---FVLVRFGP 180

Query: 60  DANGKYSAEN 69
            + G  +AE 
Sbjct: 181 GSKGMMAAEV 190


>gi|149278548|ref|ZP_01884684.1| cold shock protein [Pedobacter sp. BAL39]
 gi|149230543|gb|EDM35926.1| cold shock protein [Pedobacter sp. BAL39]
          Length = 63

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFI P        ++F+H S +    + N+ E   V+YD  Q   
Sbjct: 1  MQQGTVKFFNETKGFGFIVP---ANGDSEIFVHSSGL----MDNIRENDSVSYDVEQGKK 53

Query: 62 NGKYSAENLKL 72
              +A N+K+
Sbjct: 54 G--LNAINVKI 62


>gi|86750055|ref|YP_486551.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
           palustris HaA2]
 gi|86573083|gb|ABD07640.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
           HaA2]
          Length = 221

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  + VQ  A G 
Sbjct: 57  GVIKWFDASKGYGFIVPD---NGAADVLLHVTVLRRDGYQTAYEGARIVVECVQR-AKGY 112

Query: 65  YSAENLKLVPKSS 77
            +   + +   ++
Sbjct: 113 QAFRVVSMDESTA 125



 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ  LV +     
Sbjct: 146 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFG---P 199

Query: 60  DANGKYSAE 68
            + G  +AE
Sbjct: 200 GSKGMMAAE 208


>gi|56697005|ref|YP_167367.1| cold shock DNA-binding domain-containing protein [Ruegeria
          pomeroyi DSS-3]
 gi|56678742|gb|AAV95408.1| cold shock DNA-binding domain protein [Ruegeria pomeroyi DSS-3]
          Length = 175

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++P KGYGF+  E   E G D+ LH + + + G  ++ +G  +          G
Sbjct: 12 RGRVKWFDPTKGYGFVVAE---EGGPDILLHVNVLRNFGQSSVADGAAIEI-MTHRTDRG 67

Query: 64 KYSAENLKLVPKS 76
            + E + +VP  
Sbjct: 68 VQAVEVVSIVPPE 80



 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    GS+E   DVFLH   +  +GL +L  G+ +    + +   G+ 
Sbjct: 107 RVKWFDKGKGFGFANVFGSSE---DVFLHIEVLRQSGLSDLQPGEALAMRVI-DGKRGRM 162

Query: 66  SAENL 70
           +AE L
Sbjct: 163 AAEVL 167


>gi|300676082|gb|ADK26463.1| lin-28 [Sus scrofa]
          Length = 205

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          G  KW+N   G+GF++         +   DV +H+S +   G  +L EG+ V + + ++ 
Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVLVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97

Query: 61 AN 62
            
Sbjct: 98 KG 99


>gi|186471680|ref|YP_001862998.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184197989|gb|ACC75952.1| cold-shock DNA-binding domain protein [Burkholderia phymatum
          STM815]
          Length = 61

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          GF        SGDD+F H S V + G  +L EGQ V++D  Q    GK +A N++ +
Sbjct: 7  GFWVHHTGRRSGDDLFAHFSEVQAQGFKSLQEGQRVSFDVKQG-PKGKQAA-NIQPI 61


>gi|257387599|ref|YP_003177372.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
 gi|257169906|gb|ACV47665.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
          Length = 64

 Score = 65.4 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI  E + +   DVF H   +   G  +L EGQ V +D VQ D 
Sbjct: 1  MAQGTVDFFNDTGGYGFIDTEDADD---DVFFHMEDI---GGPDLEEGQEVEFDIVQADK 54

Query: 62 NGKYSAENLKLV 73
            +  AENL  +
Sbjct: 55 GPR--AENLTRL 64


>gi|148725317|emb|CAN88784.1| novel protein (zgc:55584) [Danio rerio]
          Length = 102

 Score = 65.4 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF++    EG       DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 41  GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSS 100

Query: 61  AN 62
             
Sbjct: 101 KG 102


>gi|123301101|dbj|BAF45318.1| Y-box protein [Bombyx mori]
          Length = 272

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+A       + ++ +G+ V +  V  +
Sbjct: 40 GTVKWFNVKSGYGFI---NRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96

Query: 61 AN 62
            
Sbjct: 97 KG 98


>gi|27379521|ref|NP_771050.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 gi|27352673|dbj|BAC49675.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 224

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  + +Q  A G 
Sbjct: 60  GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGFQTAYEGARIVVECIQR-AKGY 115

Query: 65  YSAENLKLVPKSS 77
            +   + +   ++
Sbjct: 116 QAFRVVSMDESTA 128



 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ  LV +     
Sbjct: 149 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRFG---P 202

Query: 60  DANGKYSAE 68
            + G  +AE
Sbjct: 203 GSKGMMAAE 211


>gi|222085830|ref|YP_002544361.1| cold shock protein [Agrobacterium radiobacter K84]
 gi|221723278|gb|ACM26434.1| cold shock protein [Agrobacterium radiobacter K84]
          Length = 192

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GFI P+       DV LH + +   G   + EG  +    +Q    G 
Sbjct: 28 GVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERGY 83

Query: 65 YS 66
           +
Sbjct: 84 QA 85



 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ+V    V+   
Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLAELRPGQVV---LVRFGP 170

Query: 60  DANGKYSAE 68
              G  +AE
Sbjct: 171 GEKGLMAAE 179


>gi|227487732|ref|ZP_03918048.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542371|ref|ZP_03972420.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092234|gb|EEI27546.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181569|gb|EEI62541.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 129

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS-AVASAGLFNLTEGQLVTYDYVQND 60
          +  G +KWY+PDKG+GF +  G  +      +H S +V   G+  L  GQ + +D+  + 
Sbjct: 1  MPIGKVKWYDPDKGFGFASNPGQED------VHISKSVLPEGVDTLHPGQRIEFDFAASG 54

Query: 61 ANGK 64
             +
Sbjct: 55 RGPQ 58


>gi|268574654|ref|XP_002642306.1| C. briggsae CBR-CEY-4 protein [Caenorhabditis briggsae]
 gi|187025308|emb|CAP35775.1| CBR-CEY-4 protein [Caenorhabditis briggsae AF16]
          Length = 286

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KW++    YGF+  E + +  +D F+H++A++ +      L  L E + V +D V+
Sbjct: 90  KGYVKWFSVRGRYGFVAREKAADETEDFFVHQTAISKSSTIKYYLRTLEEDEPVVFDIVE 149

Query: 59  NDANGKYSAEN 69
               G  +A  
Sbjct: 150 G-RKGPEAANV 159


>gi|148255425|ref|YP_001240010.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
           BTAi1]
 gi|146407598|gb|ABQ36104.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
          Length = 217

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  + VQ  A G 
Sbjct: 53  GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVVECVQR-AKGY 108

Query: 65  YSAENLKLVPKSS 77
            +   + +   ++
Sbjct: 109 QAFRIVSMDESTA 121



 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V    V+   
Sbjct: 142 LERAQVKWFNRLRGFGFVT---CGEGTPDIFVHMETLRRFGMTELRPGQWV---LVRYGP 195

Query: 60  DANGKYSAE 68
            + G  +AE
Sbjct: 196 GSKGMMAAE 204


>gi|229819345|ref|YP_002880871.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
          12333]
 gi|229565258|gb|ACQ79109.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM
          12333]
          Length = 127

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K+++ D+G+GFI      + G +VFLH SA+  AG  +   G  V +    +  
Sbjct: 1  MPTGKVKFFDADRGFGFIA----ADDGGEVFLHASAL-PAGSPSPKPGTRVDFGIA-DGR 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  +     L P  S
Sbjct: 55 RGPQALSVTILDPAPS 70


>gi|163736548|ref|ZP_02143967.1| hypothetical protein RGBS107_15491 [Phaeobacter gallaeciensis
          BS107]
 gi|161390418|gb|EDQ14768.1| hypothetical protein RGBS107_15491 [Phaeobacter gallaeciensis
          BS107]
          Length = 178

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++P KG+GF+  +   E G D+ LH + + + G  ++ +G  V          G
Sbjct: 12 RGLVKWFDPTKGFGFVVSD---EGGPDILLHVNVLRNFGQSSIADGAEVEL-VTHRTERG 67

Query: 64 KYSAENLKLVPKSSN 78
            + E L + P + +
Sbjct: 68 VQAVEVLSITPPARD 82



 Score = 56.1 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  E   DVFLH   +  +GL  L  G+ +    + +   G+ 
Sbjct: 107 RVKWFDKGKGFGFANVFGRDE---DVFLHVEVLRQSGLSELQPGEALGMRVI-DGKRGRM 162

Query: 66  SAENL 70
           + E L
Sbjct: 163 AVEVL 167


>gi|320591342|gb|EFX03781.1| cold-shock protein [Grosmannia clavigera kw1407]
          Length = 68

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K +N  KG+GFIT   +++   D +   +++ + G   L  G+ V +       
Sbjct: 1  MTTGTVKSFNEAKGFGFIT---ASDGSGDYYAQFASIVTHGFKTLKVGEHVNF-VPSTGP 56

Query: 62 NGKYSAENLKLV 73
          +G+  A+N++++
Sbjct: 57 HGRE-AKNIRII 67


>gi|268566689|ref|XP_002639788.1| Hypothetical protein CBG02238 [Caenorhabditis briggsae]
 gi|187037584|emb|CAP23334.1| hypothetical protein CBG_02238 [Caenorhabditis briggsae AF16]
          Length = 263

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-----GLFNLTEGQLVTYDYVQ 58
           +G +KWY+  + YGFI+     +   DVF+H++A+A +      L  L + + V +D V 
Sbjct: 62  QGKVKWYSVLRRYGFISR---NDGEKDVFVHQTAIAKSLTEKFYLRTLGDEEEVLFDLV- 117

Query: 59  NDANGKYSAEN 69
           +  NG  +A  
Sbjct: 118 DGKNGPEAANV 128


>gi|312113552|ref|YP_004011148.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
 gi|311218681|gb|ADP70049.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii
          ATCC 17100]
          Length = 191

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKW++  KG+GFI P+G      D+ +H + +   G     EG  +  + ++ D  G 
Sbjct: 28 GHIKWFDVSKGFGFIVPDGGL---PDILIHVTVLRRDGYQTAYEGARIVCEVLRRD-RGL 83

Query: 65 YSAENLKLVPKSS 77
           +   +++   ++
Sbjct: 84 QAFRVIEMDESTA 96



 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            R  +KW+N  KG+GF+T    TE   D+F+H   +   G   L  GQ+V   Y   D  
Sbjct: 117 QRAMVKWFNRLKGFGFLTRGAGTE---DIFVHMETLRRFGFAELRPGQIVQVRYGHGD-K 172

Query: 63  GKYSAE 68
           G  +AE
Sbjct: 173 GLMAAE 178


>gi|146340625|ref|YP_001205673.1| putative DNA binding cold shock protein, CspA-like [Bradyrhizobium
           sp. ORS278]
 gi|146193431|emb|CAL77447.1| Putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium
           sp. ORS278]
          Length = 217

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  + VQ  A G 
Sbjct: 53  GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVVECVQR-AKGY 108

Query: 65  YSAENLKLVPKSS 77
            +   + +   ++
Sbjct: 109 QAFRIVSMDESTA 121



 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ V    V+   
Sbjct: 142 LERAQVKWFNRLRGFGFVT---CGEGTPDIFVHMETLRRFGMTELRPGQWV---LVRYGP 195

Query: 60  DANGKYSAE 68
            + G  +AE
Sbjct: 196 GSKGMMAAE 204


>gi|270284256|ref|ZP_06193907.1| cold-shock domain protein [Bifidobacterium gallicum DSM 20093]
 gi|270277415|gb|EFA23269.1| cold-shock domain protein [Bifidobacterium gallicum DSM 20093]
          Length = 151

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G I+WY+ +KGYGFI      E G DVFL   A+  AG+  L +G  V Y  + +  
Sbjct: 23 MPSGKIRWYDANKGYGFIE----NEEGKDVFLPAMAL-PAGVTTLRKGTKVEYSVI-DGR 76

Query: 62 NGKYS 66
           G  +
Sbjct: 77 KGPQA 81


>gi|134101948|ref|YP_001107609.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL
          2338]
 gi|291007041|ref|ZP_06565014.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL
          2338]
 gi|133914571|emb|CAM04684.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL
          2338]
          Length = 150

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++  ++  KGYGFI P+     G+DVFLH S +       L  G  V ++ V  + 
Sbjct: 1  MKTGTVVRFDGIKGYGFIAPDA---GGEDVFLHASILDEELKEVLRGGMRVEFEAVPGNQ 57

Query: 62 NGKYSAENL 70
            K    NL
Sbjct: 58 GTKAMTVNL 66


>gi|149372203|ref|ZP_01891473.1| cold shock protein [unidentified eubacterium SCB49]
 gi|149354970|gb|EDM43532.1| cold shock protein [unidentified eubacterium SCB49]
          Length = 63

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G +K++N  KG+GFIT EG      D F+H S +    +  + EG  V ++  + + 
Sbjct: 1  MNKGIVKFFNDSKGFGFITEEGQE---KDHFVHISGL----IDEVREGDEVEFELKEGNK 53

Query: 62 NGKYSAENLKLV 73
              +A N++++
Sbjct: 54 G--LNAVNVRVL 63


>gi|257387598|ref|YP_003177371.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
 gi|257169905|gb|ACV47664.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
          Length = 64

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ ++N   GYGFI  E + E   DVF H   +   G  +L EGQ V +D VQ D 
Sbjct: 1  MATGTVDFFNDTGGYGFIDTEDADE---DVFFHMEDI---GGPDLEEGQEVEFDIVQADK 54

Query: 62 NGKYSAENLKLV 73
            +  AENL  +
Sbjct: 55 GPR--AENLTRL 64


>gi|110667350|ref|YP_657161.1| cold shock protein [Haloquadratum walsbyi DSM 16790]
 gi|109625097|emb|CAJ51516.1| probable cold shock protein [Haloquadratum walsbyi DSM 16790]
          Length = 98

 Score = 65.0 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI+ E + E   DVF H   +   G  +L EGQ + ++ VQ D 
Sbjct: 35 MAQGTVDFFNDTGGYGFISTEDADE---DVFFHMEDI---GGPDLEEGQDLEFEIVQADK 88

Query: 62 NGKYSAENLKLV 73
            +  A+N++ +
Sbjct: 89 GPR--AKNVERL 98


>gi|254477246|ref|ZP_05090632.1| cold shock DNA-binding domain protein [Ruegeria sp. R11]
 gi|214031489|gb|EEB72324.1| cold shock DNA-binding domain protein [Ruegeria sp. R11]
          Length = 171

 Score = 65.0 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++P KG+GF+  +   E G D+ LH + + + G  ++ +G  V          G
Sbjct: 5  RGLVKWFDPTKGFGFVVSD---EGGPDILLHVNVLRNFGQSSIADGAQVEL-VTHRTERG 60

Query: 64 KYSAENLKLVPKSSN 78
            + E + + P   +
Sbjct: 61 VQAVEVISITPPERD 75



 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  E   DVFLH   +  +GL  L  G+ +    ++    G+ 
Sbjct: 100 RVKWFDKGKGFGFANVFGRPE---DVFLHVEVLRQSGLSELQPGEALGMRVIEG-KRGRM 155

Query: 66  SAENL 70
           + E L
Sbjct: 156 AVEVL 160


>gi|241895732|ref|ZP_04783028.1| cold shock protein CspA [Weissella paramesenteroides ATCC 33313]
 gi|241871099|gb|EER74850.1| cold shock protein CspA [Weissella paramesenteroides ATCC 33313]
          Length = 69

 Score = 65.0 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K +  DKG+GFI      +  DDVF+H SA+ +  + +LT GQ V    VQ     +
Sbjct: 6  GYVKTWQSDKGFGFIE----LKGEDDVFVHFSAIQTPRVRDLTVGQEVKLVVVQGIRGPQ 61

Query: 65 YSAENL 70
           +A  +
Sbjct: 62 AAAVEV 67


>gi|120435931|ref|YP_861617.1| cold shock-like protein [Gramella forsetii KT0803]
 gi|120435932|ref|YP_861618.1| cold shock-like protein [Gramella forsetii KT0803]
 gi|117578081|emb|CAL66550.1| cold shock-like protein [Gramella forsetii KT0803]
 gi|117578082|emb|CAL66551.1| cold shock-like protein [Gramella forsetii KT0803]
          Length = 64

 Score = 65.0 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KG+GFI  + S E   D+F+H S +    +  + E   V ++  Q   
Sbjct: 1  MQEGKVKFFNNTKGFGFIKADDSNE---DIFVHSSGL----IDEIREDDRVQFEVEQGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N++++
Sbjct: 54 G--LNAVNVEVI 63


>gi|75675801|ref|YP_318222.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255]
 gi|74420671|gb|ABA04870.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi
           Nb-255]
          Length = 217

 Score = 65.0 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           G IKW++  KGYGFI P+       DV LH + +   G     EG  +  D VQ    
Sbjct: 53  GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVCDCVQRAKG 107



 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ   +  V+   
Sbjct: 142 LERAQVKWFNRLRGFGFLTR---GEGTPDIFVHMETLRRFGITELRPGQ---FVLVRFGP 195

Query: 60  DANGKYSAEN 69
            + G  +AE 
Sbjct: 196 GSKGMMAAEV 205


>gi|62290174|ref|YP_221967.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82700096|ref|YP_414670.1| cold shock DNA-binding domain-containing protein [Brucella
          melitensis biovar Abortus 2308]
 gi|189024409|ref|YP_001935177.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
 gi|237815683|ref|ZP_04594680.1| Cold shock-like protein cspG [Brucella abortus str. 2308 A]
 gi|254689477|ref|ZP_05152731.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 6
          str. 870]
 gi|254697615|ref|ZP_05159443.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 2
          str. 86/8/59]
 gi|254730506|ref|ZP_05189084.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 4
          str. 292]
 gi|256257725|ref|ZP_05463261.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 9
          str. C68]
 gi|260546718|ref|ZP_05822457.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus NCTC 8038]
 gi|260755001|ref|ZP_05867349.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 6 str. 870]
 gi|260758217|ref|ZP_05870565.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 4 str. 292]
 gi|260762044|ref|ZP_05874387.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 2 str. 86/8/59]
 gi|260884011|ref|ZP_05895625.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 9 str. C68]
 gi|297248567|ref|ZP_06932285.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
          bv. 5 str. B3196]
 gi|62196306|gb|AAX74606.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616197|emb|CAJ11240.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus
          2308]
 gi|189019981|gb|ACD72703.1| Cold-shock DNA-binding domain protein [Brucella abortus S19]
 gi|237788981|gb|EEP63192.1| Cold shock-like protein cspG [Brucella abortus str. 2308 A]
 gi|260095768|gb|EEW79645.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus NCTC 8038]
 gi|260668535|gb|EEX55475.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 4 str. 292]
 gi|260672476|gb|EEX59297.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 2 str. 86/8/59]
 gi|260675109|gb|EEX61930.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 6 str. 870]
 gi|260873539|gb|EEX80608.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 9 str. C68]
 gi|297175736|gb|EFH35083.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus
          bv. 5 str. B3196]
          Length = 193

 Score = 65.0 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH +++   G     EG  +  +    D  
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83



 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV--TYDYVQNDANGK 64
           +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +        G 
Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFG---TGEKGL 176

Query: 65  YSAE 68
            +AE
Sbjct: 177 MAAE 180


>gi|116669355|ref|YP_830288.1| cold-shock DNA-binding protein family protein [Arthrobacter sp.
          FB24]
 gi|116609464|gb|ABK02188.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24]
          Length = 127

 Score = 65.0 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF+      E G +VFL +SA+   G+  L  G  V +      A
Sbjct: 1  MPTGKVKWYDKEKGFGFLA----GEDGQEVFLPKSAL-PEGVTELKAGTRVEFGV----A 51

Query: 62 NGKYSAENLKL 72
          +G+  A+ L L
Sbjct: 52 DGRKGAQALGL 62


>gi|327402092|ref|YP_004342930.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
          16823]
 gi|327317600|gb|AEA42092.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
          16823]
          Length = 64

 Score = 65.0 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFI  +   +S  D F+H S +       + EG  V ++  +   
Sbjct: 1  MNKGTVKFFNETKGFGFIKED---DSAKDHFVHVSGLVDE----IREGDQVEFELEEGKR 53

Query: 62 NGKYSAENLKLV 73
              +A N++++
Sbjct: 54 G--VNAVNVRVI 63


>gi|170749143|ref|YP_001755403.1| cold-shock DNA-binding domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655665|gb|ACB24720.1| cold-shock DNA-binding domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 201

 Score = 65.0 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KG+GFI P+   +   D+ LH + +   G    +EG  +  + V+    G 
Sbjct: 38  GRIKWFDVSKGFGFIVPD---DGAPDILLHVTCLRRDGYQAASEGARIVVEAVER-PRGW 93

Query: 65  YSAENLKL 72
            +   + L
Sbjct: 94  QAFRVISL 101



 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           +    +KW+N  +G+GF+T     +   D+F+H   +   G+  L  G+ V    V+  +
Sbjct: 127 LETAVVKWFNRLRGFGFLTR---GDGTPDIFVHMETLRRYGIAELKPGESV---LVRYGD 180

Query: 60  DANGKYSAEN 69
            + G  +AE 
Sbjct: 181 GSKGVMAAEV 190


>gi|92117669|ref|YP_577398.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
           hamburgensis X14]
 gi|91800563|gb|ABE62938.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
           X14]
          Length = 217

 Score = 65.0 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           G IKW++  KGYGFI P+       DV LH + +   G   + EG  +  + VQ    
Sbjct: 53  GVIKWFDASKGYGFIIPD---NGWSDVLLHVTVLRRDGYQTVYEGARLICECVQRAKG 107



 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ   +  V+   
Sbjct: 142 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQ---FVLVRFGP 195

Query: 60  DANGKYSAE 68
            + G  +AE
Sbjct: 196 GSKGMMAAE 204


>gi|254464203|ref|ZP_05077614.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          Y4I]
 gi|206685111|gb|EDZ45593.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          Y4I]
          Length = 179

 Score = 65.0 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KGYGF+  +   E G D+ LH + + + G  ++ +G  +          G
Sbjct: 12 QGLVKWFDPAKGYGFVVSD---EGGPDILLHVNVLRNFGQSSVADGARIEI-VTHQTGRG 67

Query: 64 KYSAENLKLVPKSSN 78
            + E L ++P   +
Sbjct: 68 VQAVEVLSIMPPERD 82



 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G    G+DVFLH   +  +GL +L  G+ +    + +   G+ 
Sbjct: 107 RVKWFDKGKGFGFANVFGR---GEDVFLHVEVLRQSGLADLQPGEALAMRVI-DGKRGRM 162

Query: 66  SAENL----KLVPKSSN 78
           + E L     L+P S++
Sbjct: 163 AVEVLAWEAALMPGSAD 179


>gi|189502046|ref|YP_001957763.1| hypothetical protein Aasi_0637 [Candidatus Amoebophilus asiaticus
          5a2]
 gi|189497487|gb|ACE06034.1| hypothetical protein Aasi_0637 [Candidatus Amoebophilus asiaticus
          5a2]
          Length = 67

 Score = 65.0 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 9/73 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL--TEGQLVTYDYVQN 59
          +  G+IK++N  KGYGFIT      +  D F+H +A+    +  L   EG  VT++ V+ 
Sbjct: 1  MKTGTIKFFNESKGYGFIT----DSASQDHFVHVTALHDE-VKELDMKEGHKVTFETVET 55

Query: 60 DANGKYSAENLKL 72
                +A N++L
Sbjct: 56 SRG--SNATNVRL 66


>gi|145594602|ref|YP_001158899.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440]
 gi|145303939|gb|ABP54521.1| cold-shock DNA-binding protein family [Salinispora tropica
          CNB-440]
          Length = 137

 Score = 65.0 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G+I  ++  +GYGFI P G    GDDVF+H +         +  G  V+Y+ VQ++ 
Sbjct: 1  MEKGTIVRFDDVRGYGFIAPFG---GGDDVFVHANDF-GDQRHAVAAGMRVSYEVVQSER 56

Query: 62 NGKYSAENLKLVPKSSN 78
            K ++  L+  P + N
Sbjct: 57 GLKVASVVLETAPAAPN 73


>gi|146277100|ref|YP_001167259.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555341|gb|ABP69954.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC
           17025]
          Length = 180

 Score = 65.0 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G +KW++  KG+GF    G +E   DVF+H   +  +G  +L  G+ V    ++   
Sbjct: 103 LEPGRVKWFDKGKGFGFANVFGRSE---DVFIHVEVLRMSGFADLAAGEAVALRIIEG-R 158

Query: 62  NGKYSAENLK 71
            G+ + + + 
Sbjct: 159 RGRMAVQVVS 168



 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 4/73 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GFI  E   E+G D+ LH + + + G  ++ +G  +T   VQ+   G 
Sbjct: 13 GRVKWFDPAKGFGFIVTE---ENGADILLHANVLRNYGQSSVADGAGITVK-VQSTQRGV 68

Query: 65 YSAENLKLVPKSS 77
           + E +++ P + 
Sbjct: 69 QAVEVVEIEPPAG 81


>gi|268562898|ref|XP_002638697.1| Hypothetical protein CBG11894 [Caenorhabditis briggsae]
 gi|187029975|emb|CAP30963.1| hypothetical protein CBG_11894 [Caenorhabditis briggsae AF16]
          Length = 258

 Score = 65.0 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KWY+  + YGFI+     +   DVF+H++A+A +      L  L + + + +D V+
Sbjct: 62  QGKVKWYSVLRRYGFISR---NDGEKDVFVHQTAIAKSNTEKFYLRTLADEEDIVFDLVE 118

Query: 59  NDANGKYSAEN 69
              NG  +A  
Sbjct: 119 G-KNGPEAANV 128


>gi|56462192|gb|AAV91379.1| hypothetical protein 18 [Lonomia obliqua]
          Length = 254

 Score = 65.0 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        + ++ +G++V +  V  +
Sbjct: 31 GTVKWFNVKSGYGFI---NRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEVVEFAVVAGE 87

Query: 61 AN 62
            
Sbjct: 88 KG 89


>gi|312892429|ref|ZP_07751924.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
          DSM 18603]
 gi|311295213|gb|EFQ72387.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
          DSM 18603]
          Length = 65

 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K++N  KG+GFI P    +  ++VF+H S +    +  + E   V Y   +  
Sbjct: 1  MQKEGTVKFFNETKGFGFIIP---ADGSEEVFVHSSGL----IDQIRENDKVEYGVERGK 53

Query: 61 ANGKYSAENLKLV 73
               +A N+K++
Sbjct: 54 KG--MNAVNVKVI 64


>gi|120435933|ref|YP_861619.1| cold shock-like protein [Gramella forsetii KT0803]
 gi|117578083|emb|CAL66552.1| cold shock-like protein [Gramella forsetii KT0803]
          Length = 64

 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KG+GFI  EGS E   D+F+H S +    + ++ E   V ++  Q   
Sbjct: 1  MQEGKVKFFNNTKGFGFIQAEGSNE---DIFVHSSGL----IDDIREDDRVQFETEQGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N++L+
Sbjct: 54 G--LNAINVELI 63


>gi|254703775|ref|ZP_05165603.1| ATP/GTP-binding site motif A, P-loop protein [Brucella suis bv. 3
          str. 686]
          Length = 72

 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36
          +  G++K++N  KG+GFI P+   +   DVF+H S
Sbjct: 1  MANGTVKFFNSTKGFGFIQPD---DGSSDVFVHIS 32


>gi|254693964|ref|ZP_05155792.1| Cold shock-like protein cspG [Brucella abortus bv. 3 str. Tulya]
 gi|261214256|ref|ZP_05928537.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 3 str. Tulya]
 gi|260915863|gb|EEX82724.1| cold-shock DNA-binding domain-containing protein [Brucella
          abortus bv. 3 str. Tulya]
          Length = 193

 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH +++   G     EG  +  +    D  
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83



 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +   +  G  +
Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGE-KGLMA 178

Query: 67  AE 68
           AE
Sbjct: 179 AE 180


>gi|159898821|ref|YP_001545068.1| cold-shock DNA-binding domain-containing protein [Herpetosiphon
          aurantiacus ATCC 23779]
 gi|159891860|gb|ABX04940.1| cold-shock DNA-binding domain protein [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 197

 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           G++ W++P+K YGFIT    T +G  +F+HR A+   G   L EG+ V++  V+    
Sbjct: 6  TGTVAWFDPEKSYGFIT----THAGASLFVHRRAL-GDGRRWLVEGEEVSFVVVRGMKG 59


>gi|260566972|ref|ZP_05837442.1| LOW QUALITY PROTEIN: ATP/GTP-binding site-containing protein A
          [Brucella suis bv. 4 str. 40]
 gi|261754421|ref|ZP_05998130.1| LOW QUALITY PROTEIN: cold shock protein cspA [Brucella suis bv. 3
          str. 686]
 gi|260156490|gb|EEW91570.1| LOW QUALITY PROTEIN: ATP/GTP-binding site-containing protein A
          [Brucella suis bv. 4 str. 40]
 gi|261744174|gb|EEY32100.1| LOW QUALITY PROTEIN: cold shock protein cspA [Brucella suis bv. 3
          str. 686]
          Length = 69

 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36
          +  G++K++N  KG+GFI P+   +   DVF+H S
Sbjct: 1  MANGTVKFFNSTKGFGFIQPD---DGSSDVFVHIS 32


>gi|121601754|ref|YP_989122.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
          KC583]
 gi|120613931|gb|ABM44532.1| cold-shock DNA-binding family protein [Bartonella bacilliformis
          KC583]
          Length = 179

 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           G IKW++  KGYGF+TP+       D+ LH S +   G     EG  V     +    
Sbjct: 15 TGIIKWFDSSKGYGFVTPDFPKL--PDILLHISVMQRDGFQTALEGAKVVCSVKKTKRG 71



 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N DKG+GF++     +  +D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 105 LERAIVKWFNRDKGFGFLSR---GQGTEDIFIHMETLRRFGLTELRAGQVVIVRFGKGE- 160

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 161 KGLMTAE 167


>gi|77462899|ref|YP_352403.1| cold-shock DNA-binding protein family protein [Rhodobacter
           sphaeroides 2.4.1]
 gi|126461790|ref|YP_001042904.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221638771|ref|YP_002525033.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides
           KD131]
 gi|332557790|ref|ZP_08412112.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
           sphaeroides WS8N]
 gi|77387317|gb|ABA78502.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides
           2.4.1]
 gi|126103454|gb|ABN76132.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC
           17029]
 gi|221159552|gb|ACM00532.1| Cold-shock DNA-binding protein family precursor [Rhodobacter
           sphaeroides KD131]
 gi|332275502|gb|EGJ20817.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
           sphaeroides WS8N]
          Length = 180

 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G +KW++  KG+GF    G  E   DVF+H   +  +G  +L  G+ V    ++   
Sbjct: 103 LEPGRVKWFDKGKGFGFANVFGRPE---DVFIHVEVLRMSGFADLAAGEAVALRIIEG-R 158

Query: 62  NGKYSAENLK 71
            G+ + + + 
Sbjct: 159 RGRMAVQVVS 168



 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GFI  E   E+G D+ LH + + + G  ++ +G  +T   VQ+   G 
Sbjct: 13 GRVKWFDPAKGFGFIVTE---ENGADILLHANVLRNYGQSSVADGAGITVK-VQSTQRGV 68

Query: 65 YSAENLKLVPKSS 77
           + E +++ P   
Sbjct: 69 QAVEVIEIEPPEG 81


>gi|85713421|ref|ZP_01044416.1| Cold shock protein [Idiomarina baltica OS145]
 gi|85692757|gb|EAQ30760.1| Cold shock protein [Idiomarina baltica OS145]
          Length = 40

 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF 44
          +  G +KW+N  KG+GFI  E       D+F H S +   G  
Sbjct: 1  MATGKVKWFNNSKGFGFIESEDRE---GDIFAHYSTIDMEGYR 40


>gi|332521006|ref|ZP_08397466.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
 gi|332043536|gb|EGI79732.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
          Length = 63

 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFIT EG      D F+H + +    +  + EG  V +D  +   
Sbjct: 1  MSKGTVKFFNDTKGFGFITEEGVD---KDHFVHVTGI----IDEIREGDDVEFDLQEGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|289178440|gb|ADC85686.1| Cold shock protein [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 168

 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G I+W++  KGYGFI  +     G DVFL ++A+   G+ N  +G  V Y  ++ + 
Sbjct: 40 MPSGRIRWFDAKKGYGFIAGD----DGKDVFLPQTAL-PQGVRNPRKGAKVEYSVIEGNR 94

Query: 62 N 62
           
Sbjct: 95 G 95


>gi|300781744|ref|ZP_07091598.1| cold-shock domain family protein [Corynebacterium genitalium ATCC
          33030]
 gi|300533451|gb|EFK54512.1| cold-shock domain family protein [Corynebacterium genitalium ATCC
          33030]
          Length = 127

 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ +KG+GF+    S    +DV++ ++ V   G+ +L  GQ + +D+     
Sbjct: 1  MPVGKVKWFDAEKGFGFV----SNPGDEDVYVGKN-VLPDGVEDLHPGQRIEFDFAAGRR 55

Query: 62 NGKYSAENLKLV 73
               A  +KL+
Sbjct: 56 G--PQALRVKLL 65


>gi|222148686|ref|YP_002549643.1| cold shock protein [Agrobacterium vitis S4]
 gi|221735672|gb|ACM36635.1| cold shock protein [Agrobacterium vitis S4]
          Length = 192

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64
           +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ V    V+  N   G 
Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQTV---LVRFGNGDKGL 175

Query: 65  YSAE 68
            +AE
Sbjct: 176 MAAE 179



 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           G +KW++  KG+GFI P+       DV LH + +   G   + EG  +
Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI 72


>gi|148559681|ref|YP_001259182.1| cold-shock family protein [Brucella ovis ATCC 25840]
 gi|225627734|ref|ZP_03785771.1| Cold shock-like protein cspG [Brucella ceti str. Cudo]
 gi|254710329|ref|ZP_05172140.1| cold-shock family protein [Brucella pinnipedialis B2/94]
 gi|254714325|ref|ZP_05176136.1| cold-shock family protein [Brucella ceti M644/93/1]
 gi|254717224|ref|ZP_05179035.1| cold-shock family protein [Brucella ceti M13/05/1]
 gi|254719316|ref|ZP_05181127.1| cold-shock family protein [Brucella sp. 83/13]
 gi|256031823|ref|ZP_05445437.1| cold-shock family protein [Brucella pinnipedialis M292/94/1]
 gi|256160002|ref|ZP_05457711.1| cold-shock family protein [Brucella ceti M490/95/1]
 gi|256255223|ref|ZP_05460759.1| cold-shock family protein [Brucella ceti B1/94]
 gi|256369687|ref|YP_003107197.1| cold-shock family protein [Brucella microti CCM 4915]
 gi|260168957|ref|ZP_05755768.1| cold-shock family protein [Brucella sp. F5/99]
 gi|261219042|ref|ZP_05933323.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M13/05/1]
 gi|261222420|ref|ZP_05936701.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          B1/94]
 gi|261317893|ref|ZP_05957090.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis B2/94]
 gi|261322102|ref|ZP_05961299.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M644/93/1]
 gi|261758450|ref|ZP_06002159.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          F5/99]
 gi|265984317|ref|ZP_06097052.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          83/13]
 gi|265988922|ref|ZP_06101479.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M292/94/1]
 gi|265998387|ref|ZP_06110944.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M490/95/1]
 gi|294852602|ref|ZP_06793275.1| cold shock protein [Brucella sp. NVSL 07-0026]
 gi|306839091|ref|ZP_07471908.1| cold-shock family protein [Brucella sp. NF 2653]
 gi|306840269|ref|ZP_07473043.1| cold-shock family protein [Brucella sp. BO2]
 gi|306844169|ref|ZP_07476762.1| cold-shock family protein [Brucella sp. BO1]
 gi|148370938|gb|ABQ60917.1| cold-shock family protein [Brucella ovis ATCC 25840]
 gi|225617739|gb|EEH14784.1| Cold shock-like protein cspG [Brucella ceti str. Cudo]
 gi|255999849|gb|ACU48248.1| cold-shock family protein [Brucella microti CCM 4915]
 gi|260921004|gb|EEX87657.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          B1/94]
 gi|260924131|gb|EEX90699.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M13/05/1]
 gi|261294792|gb|EEX98288.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M644/93/1]
 gi|261297116|gb|EEY00613.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis B2/94]
 gi|261738434|gb|EEY26430.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          F5/99]
 gi|262552855|gb|EEZ08845.1| cold-shock DNA-binding domain-containing protein [Brucella ceti
          M490/95/1]
 gi|264661119|gb|EEZ31380.1| cold-shock DNA-binding domain-containing protein [Brucella
          pinnipedialis M292/94/1]
 gi|264662909|gb|EEZ33170.1| cold-shock DNA-binding domain-containing protein [Brucella sp.
          83/13]
 gi|294821191|gb|EFG38190.1| cold shock protein [Brucella sp. NVSL 07-0026]
 gi|306275444|gb|EFM57181.1| cold-shock family protein [Brucella sp. BO1]
 gi|306289796|gb|EFM60978.1| cold-shock family protein [Brucella sp. BO2]
 gi|306405638|gb|EFM61900.1| cold-shock family protein [Brucella sp. NF 2653]
          Length = 193

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH +++   G     EG  +  +    D  
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83



 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +   +  G  +
Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGE-KGLMA 178

Query: 67  AE 68
           AE
Sbjct: 179 AE 180


>gi|330862902|emb|CBX73039.1| cold shock-like protein cspE [Yersinia enterocolitica W22703]
          Length = 50

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          +  G +KW+N  +GYGFI+P    +   DV++ ++A+A+    +L+EGQ V
Sbjct: 3  LKMGRVKWFNQSEGYGFISPH---DGSLDVYVSKTAIANTKNKSLSEGQDV 50


>gi|294635685|ref|ZP_06714157.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
 gi|291090966|gb|EFE23527.1| conserved domain protein [Edwardsiella tarda ATCC 23685]
          Length = 50

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 23 GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
             +   DVF+H SA+ S     L EGQ V +  V+N   G  +   + +
Sbjct: 1  SPADGSKDVFVHFSAIQSNEFRTLDEGQKVEFS-VENSPKGPSAVNVVAI 49


>gi|300022575|ref|YP_003755186.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299524396|gb|ADJ22865.1| cold-shock DNA-binding domain protein [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 199

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KG+GFI P+       D+ LH + + + G     EG  V  + ++    
Sbjct: 35 GMIKWFDASKGFGFIVPD---NGLPDILLHVTCLRAGGFQTAYEGARVHCEVLRRSKG 89



 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-DA 61
            R  +KW+N  +G+GF+T     E   D+F H   +   G   L  GQ+V         +
Sbjct: 124 ERAYVKWFNRVRGFGFLTR---GEGTPDIFCHMETLRRFGFTELRPGQIVQ--VRWGYGS 178

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 179 KGCMAAE 185


>gi|254702002|ref|ZP_05163830.1| cold-shock family protein [Brucella suis bv. 5 str. 513]
 gi|261752569|ref|ZP_05996278.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 5 str. 513]
 gi|261742322|gb|EEY30248.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 5 str. 513]
          Length = 193

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH +++   G     EG  +  +    D  
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83



 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +   +  G  +
Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGE-KGLMA 178

Query: 67  AE 68
           AE
Sbjct: 179 AE 180


>gi|319783223|ref|YP_004142699.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169111|gb|ADV12649.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 198

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   + + D 
Sbjct: 124 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRYGVTELRPGQVVLVRFGRGD- 179

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 180 KGLMAAE 186



 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+IKW++  KGYGFI P+       D+ LH + +   G     EG  V    V++   G 
Sbjct: 34 GAIKWFDVAKGYGFILPDDGISG--DILLHVTCLRRDGFQTALEGARVVC-LVKHGERGL 90

Query: 65 YSAENLKL 72
           +   L +
Sbjct: 91 QAFRVLSM 98


>gi|146300393|ref|YP_001194984.1| cold-shock DNA-binding domain-containing protein [Flavobacterium
          johnsoniae UW101]
 gi|146154811|gb|ABQ05665.1| cold-shock DNA-binding protein family [Flavobacterium johnsoniae
          UW101]
          Length = 63

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N +KG+GFITP      G +VF+H S ++     ++ +   V YD  +   
Sbjct: 1  MQEGTVKFFNEEKGFGFITP---NNGGAEVFVHASGLS----ESIRQDDAVRYDIEEGRK 53

Query: 62 NGKYSAENLKL 72
              +A N+ +
Sbjct: 54 G--PNAVNVVV 62


>gi|153009253|ref|YP_001370468.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum
          anthropi ATCC 49188]
 gi|151561141|gb|ABS14639.1| putative cold-shock DNA-binding domain protein [Ochrobactrum
          anthropi ATCC 49188]
          Length = 193

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+      +D+ LH +++   G     EG  +  +    D  
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLNDILLHVTSLRRDGFQTALEGARIVCEVRNGDRG 83



 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   + + D  G  +
Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGEGD-KGLMA 178

Query: 67  AE 68
           AE
Sbjct: 179 AE 180


>gi|148681705|gb|EDL13652.1| mCG50433 [Mus musculus]
          Length = 305

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G+++W N   GY FI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +
Sbjct: 60  GTVRWINVRNGYSFI---NRNDTKEDVFVHQTAIRKNNPRKYLRSVGDGETVEFDVVEGE 116

Query: 61  ANGKYSAEN 69
             G  +A+ 
Sbjct: 117 -KGAEAAKV 124


>gi|183601800|ref|ZP_02963170.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683669|ref|YP_002470052.1| cold shock protein [Bifidobacterium animalis subsp. lactis AD011]
 gi|183219406|gb|EDT90047.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621319|gb|ACL29476.1| cold shock protein [Bifidobacterium animalis subsp. lactis AD011]
          Length = 129

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G I+W++  KGYGFI  +     G DVFL ++A+   G+ N  +G  V Y  ++ + 
Sbjct: 1  MPSGRIRWFDAKKGYGFIAGD----DGKDVFLPQTAL-PQGVRNPRKGAKVEYSVIEGNR 55

Query: 62 N 62
           
Sbjct: 56 G 56


>gi|157126269|ref|XP_001654567.1| hypothetical protein AaeL_AAEL002060 [Aedes aegypti]
 gi|108882539|gb|EAT46764.1| hypothetical protein AaeL_AAEL002060 [Aedes aegypti]
          Length = 192

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV---ASAGL-FNLTEGQLVTYDYVQN 59
           G++KW+N   G+GFIT     ++G+D+F+H+S +          ++ +G++V +  + +
Sbjct: 35 TGTVKWFNAKDGFGFITRH---DTGEDIFVHKSCIFKPNRNHFTKSIGDGEIVEFGLIAS 91

Query: 60 DANGK 64
             G 
Sbjct: 92 KVTGP 96


>gi|302383024|ref|YP_003818847.1| cold-shock DNA-binding domain protein [Brevundimonas
          subvibrioides ATCC 15264]
 gi|302193652|gb|ADL01224.1| cold-shock DNA-binding domain protein [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 186

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 5  GSIKWYNPDKGYGFITPEG-STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G +KW++P KGYGFI P+        D+ LH S++  +G     EG  +  D  +    
Sbjct: 17 GRVKWFDPGKGYGFIVPDDPGQTDHKDILLHISSLRDSGRDLAGEGATIECDCARRAKG 75



 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           ++KW+N  KGYGF+  E       D+F+H   +   GL +L  G+ V   +      G  
Sbjct: 123 TVKWFNRTKGYGFVVRETDP---GDIFVHIETLRRCGLDDLVPGETVAVRFA-TGPKGLV 178

Query: 66  SAE 68
            AE
Sbjct: 179 VAE 181


>gi|126735666|ref|ZP_01751411.1| cold shock DNA-binding domain protein [Roseobacter sp. CCS2]
 gi|126714853|gb|EBA11719.1| cold shock DNA-binding domain protein [Roseobacter sp. CCS2]
          Length = 190

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GF+  E   E G D+ LH + + + G  ++ +G  ++   VQ+   G 
Sbjct: 29 GQVKWFDPTKGFGFVVSE---EGGPDILLHANVLRNYGQGSVVDGSAISI-MVQDTQRGL 84

Query: 65 YSAENLKLVPKSSN 78
           + E L + P  + 
Sbjct: 85 QATEVLSITPPETE 98



 Score = 57.3 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G+ E   DVF+H   +  +GL +L  G+ +    V +   G+ 
Sbjct: 123 RVKWFDKAKGFGFANVFGNNE---DVFVHVEVLRRSGLSDLQSGEAIGIRMV-DGERGRM 178

Query: 66  SAENL 70
           + E +
Sbjct: 179 AIEVI 183


>gi|270291449|ref|ZP_06197671.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus
          acidilactici 7_4]
 gi|270280295|gb|EFA26131.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus
          acidilactici 7_4]
          Length = 70

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++  ++  KGYGFI      ++G+  F+H SAV S     L E ++V     +   
Sbjct: 1  METGTVTSFDKTKGYGFIE----LDNGEKAFVHYSAVQSDDFKTLDENEVVQLMVAEGPK 56

Query: 62 N 62
           
Sbjct: 57 G 57


>gi|304393756|ref|ZP_07375684.1| cold shock protein [Ahrensia sp. R2A130]
 gi|303294763|gb|EFL89135.1| cold shock protein [Ahrensia sp. R2A130]
          Length = 216

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G+IKW++  KG+GF+ P+   +   DV LH S +   G     EG  +  + V+  A G 
Sbjct: 52  GAIKWFDVSKGFGFVVPD---DDMPDVLLHVSCLRDDGFQTAHEGARIVCEVVR-KARGL 107

Query: 65  YSAENLKL 72
            +   L +
Sbjct: 108 QAFRVLSM 115



 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T     E  +D+F+H   +   GL  L  GQ V   Y   D  G  +
Sbjct: 146 VKWFNRTKGFGFLTQ---GEGTEDIFIHMETLRRFGLTELRPGQHVMVRYGHGD-KGLMA 201

Query: 67  AEN 69
           AE 
Sbjct: 202 AEV 204


>gi|148645028|gb|ABR01044.1| Csp [uncultured Geobacter sp.]
          Length = 48

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          FI  +    +G+DVF+H SA+   G  +L EG  VT++ V+    G  +A  
Sbjct: 1  FIEQD----NGEDVFVHFSAIQGEGFKSLAEGDTVTFEVVKG-PKGLQAANV 47


>gi|17987014|ref|NP_539648.1| cold shock protein [Brucella melitensis bv. 1 str. 16M]
 gi|225852761|ref|YP_002732994.1| cold shock-like protein CspG [Brucella melitensis ATCC 23457]
 gi|256044907|ref|ZP_05447811.1| Cold shock-like protein cspG [Brucella melitensis bv. 1 str.
          Rev.1]
 gi|256113823|ref|ZP_05454616.1| Cold shock-like protein cspG [Brucella melitensis bv. 3 str.
          Ether]
 gi|256263754|ref|ZP_05466286.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 2 str. 63/9]
 gi|260565491|ref|ZP_05835975.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. 16M]
 gi|265991335|ref|ZP_06103892.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. Rev.1]
 gi|265995172|ref|ZP_06107729.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 3 str. Ether]
 gi|17982667|gb|AAL51912.1| cold shock protein [Brucella melitensis bv. 1 str. 16M]
 gi|225641126|gb|ACO01040.1| Cold shock-like protein cspG [Brucella melitensis ATCC 23457]
 gi|260151559|gb|EEW86653.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. 16M]
 gi|262766285|gb|EEZ12074.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 3 str. Ether]
 gi|263002119|gb|EEZ14694.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 1 str. Rev.1]
 gi|263093812|gb|EEZ17817.1| cold-shock DNA-binding domain-containing protein [Brucella
          melitensis bv. 2 str. 63/9]
 gi|326409287|gb|ADZ66352.1| cold shock-like protein CspG [Brucella melitensis M28]
 gi|326538998|gb|ADZ87213.1| cold shock-like protein cspG [Brucella melitensis M5-90]
          Length = 193

 Score = 64.6 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH +++   G     EG  +  +    D  
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83



 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +   +  G  +
Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGE-KGLMA 178

Query: 67  AE 68
           AE
Sbjct: 179 AE 180


>gi|227356797|ref|ZP_03841182.1| cold shock protein Csp [Proteus mirabilis ATCC 29906]
 gi|227163087|gb|EEI48022.1| cold shock protein Csp [Proteus mirabilis ATCC 29906]
          Length = 88

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ +KGYG I    + +   D+++++ A+A+     LTEGQ V +  ++  A
Sbjct: 22 LRMGRVKWFDNNKGYGLIV---AKDLEQDIYVNKKAIANTKNKALTEGQDVEFSVIKT-A 77

Query: 62 NGKYSAENL 70
           G  +A+ +
Sbjct: 78 AGLEAADVI 86


>gi|255531633|ref|YP_003092005.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366]
 gi|255344617|gb|ACU03943.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366]
          Length = 63

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI P   +    ++F+H SA+++     + E   V+Y+ V+N  
Sbjct: 1  MPEGTVKFFNESKGFGFIIP---SNGDPELFVHASALSAP----VRENDRVSYE-VENGK 52

Query: 62 NGKYSAENLKL 72
           G  + +  K+
Sbjct: 53 KGLNATKVKKI 63


>gi|83814564|ref|YP_446548.1| hypothetical protein SRU_2449 [Salinibacter ruber DSM 13855]
 gi|294508486|ref|YP_003572544.1| Cold shock-like protein cspC [Salinibacter ruber M8]
 gi|83755958|gb|ABC44071.1| conserved domain protein [Salinibacter ruber DSM 13855]
 gi|294344814|emb|CBH25592.1| Cold shock-like protein cspC [Salinibacter ruber M8]
          Length = 75

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 10/79 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN---LTEGQLVTYDYVQ 58
          + +G +K+++  +G+GFI P    +  +DVFLH + +  +G+ +   L EGQ + Y+  Q
Sbjct: 1  MEKGKLKFFDTSRGFGFIEP---LDGSEDVFLHANNI--SGMTSGEDLREGQTIEYETEQ 55

Query: 59 NDANGKYSAENLKLVPKSS 77
           +     SA N     ++S
Sbjct: 56 TEKG--LSALNAAPADETS 72


>gi|86130406|ref|ZP_01049006.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
 gi|85819081|gb|EAQ40240.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
          Length = 82

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +   G +K++N  KG+GFI  + S E    VF+H + V       L E   VT++    +
Sbjct: 17 IRKEGKVKFFNTKKGFGFIAIDNSDEE---VFVHTTNVTG----RLRENDKVTFEVEDGE 69

Query: 61 ANGKYSAENLKLVPK 75
               SA N+K V K
Sbjct: 70 KG--PSAVNVKRVKK 82


>gi|255037756|ref|YP_003088377.1| cold-shock DNA-binding domain-containing protein [Dyadobacter
          fermentans DSM 18053]
 gi|254950512|gb|ACT95212.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM
          18053]
          Length = 64

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KGYGFI  +   ++  D+F+H + +   G   + E   V Y+ V+   
Sbjct: 1  MPTGTVKFFNEAKGYGFIVED---DTKKDIFVHVTGL---GGLTIRENDQVEYEVVEGKK 54

Query: 62 NGKYSAENLKLV 73
              +A  +K +
Sbjct: 55 G--LNAVQVKKI 64


>gi|332638444|ref|ZP_08417307.1| Cold-shock protein [Weissella cibaria KACC 11862]
          Length = 73

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K +N D G+GFI      +  +DVF+H SA+ +  + +L  G+ V    VQ     
Sbjct: 5  EGYVKTWNADNGFGFIE----LKGEEDVFVHFSAIETPRVRDLEVGEPVKLVVVQGVRGP 60

Query: 64 KYSAENLKLVPKS 76
          + +A  +K+  ++
Sbjct: 61 QAAAVEVKVTGEA 73


>gi|61680881|pdb|2BH8|A Chain A, Combinatorial Protein 1b11
 gi|61680882|pdb|2BH8|B Chain B, Combinatorial Protein 1b11
          Length = 101

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 3/34 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37
           G +KW+N DKG+GFITP+   +   DVF+H SA
Sbjct: 18 TGIVKWFNADKGFGFITPD---DGSKDVFVHFSA 48


>gi|296118317|ref|ZP_06836898.1| cold-shock domain protein [Corynebacterium ammoniagenes DSM
          20306]
 gi|295968875|gb|EFG82119.1| cold-shock domain protein [Corynebacterium ammoniagenes DSM
          20306]
          Length = 127

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ +KG+GF+    S    +DV++ R+ V   G+  L +GQ + +D+     
Sbjct: 1  MPIGKVKWFDAEKGFGFV----SNPGDEDVYVGRN-VLPEGVEELVQGQRIEFDFAAGRR 55

Query: 62 NGKYSAENLKLVP 74
               A  +K++ 
Sbjct: 56 G--PQALRVKILE 66


>gi|110634084|ref|YP_674292.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp.
           BNC1]
 gi|110285068|gb|ABG63127.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1]
          Length = 197

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   + + D 
Sbjct: 123 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGVTELRPGQVVLVRFGRGD- 178

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 179 KGLMAAE 185



 Score = 60.3 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G+IKW++  KG+GFI P+ +     DV LH S +   G      G  V     +    G 
Sbjct: 33  GAIKWFDVAKGFGFILPDIAEFG--DVLLHVSCLRRDGFQTALSGARVVC-LAKRGDKGM 89

Query: 65  YSAENLKLVPKSS 77
            +   + +   ++
Sbjct: 90  QAFRVVSMDMSTA 102


>gi|302549706|ref|ZP_07302048.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
 gi|302467324|gb|EFL30417.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
          Length = 164

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +  ++  KGYGFI P+     G+DVF+H + +A  G   LT G  V +D +    
Sbjct: 1  MAQGVVVRFDDVKGYGFIAPD---NGGEDVFVHVNDLAEPG-TTLTSGTRVVFDVLDGGR 56

Query: 62 NGKYSAENLKLVPKSS 77
               A ++ L   + 
Sbjct: 57 G--LKAYDVSLAGPAQ 70


>gi|167646972|ref|YP_001684635.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp.
          K31]
 gi|167349402|gb|ABZ72137.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31]
          Length = 201

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G +KW++  KGYGFI P+   ++G  DV LH +++ + G     EG ++  D V+    G
Sbjct: 20 GRVKWFDTGKGYGFIVPDDPGQTGLKDVLLHVTSLRNCGRETALEGAVIVCDVVKR-PKG 78

Query: 64 KYSAENLKLVPKSSN 78
             +E + L   +++
Sbjct: 79 WQVSEVVDLDESAAS 93



 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             R  +KW+N  KGYGF+  +G      D+F+H   +   GL +L  G  V   + +   
Sbjct: 133 AERAKVKWFNRTKGYGFVVRDGQP---GDIFVHIETLRRGGLEDLQPGDDVMVRFAEG-P 188

Query: 62  NGKYSAE 68
            G   AE
Sbjct: 189 KGLVVAE 195


>gi|126737875|ref|ZP_01753605.1| cold shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
 gi|126721268|gb|EBA17972.1| cold shock DNA-binding domain protein [Roseobacter sp. SK209-2-6]
          Length = 178

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KGYGF+  +     G D+ LH + + + G  ++ +G  +      N   G
Sbjct: 12 QGLVKWFDPAKGYGFVVSDS---GGPDILLHVNVLRNFGQSSVADGTRIEV-VTHNTDRG 67

Query: 64 KYSAENLKLVPKSSN 78
            + E L ++P   +
Sbjct: 68 VQAVEILSILPPERD 82



 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW+N  KG+GF    G      DVFLH   +  +GL +L  G+ +    + +   G+ 
Sbjct: 107 RVKWFNKGKGFGFANVFGRD---ADVFLHVEVLRQSGLADLQPGEALAMRVI-DGKRGQM 162

Query: 66  SAEN 69
           +AE 
Sbjct: 163 AAEV 166


>gi|323451383|gb|EGB07260.1| hypothetical protein AURANDRAFT_64934 [Aureococcus anophagefferens]
          Length = 1057

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 14/77 (18%)

Query: 1   MVHR----GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           M+H     G++ W+   K +GFI P+   + G+D+F+H S +         +G  V YD 
Sbjct: 570 MMHMTSCAGTVLWF--SKSHGFIKPD---DGGEDIFVHGSDIFQ---KYANDGDRVLYDV 621

Query: 57  VQNDANGKYSAENLKLV 73
                 G+  A  +++V
Sbjct: 622 --GTLKGRPKAVAVEIV 636



 Score = 41.9 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 3   HRGSIKWYNPDKGYGFITPEGS---TESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQ 58
           +RG  KW+N    +GFITP  S        DVF +   +A      ++T G  V Y    
Sbjct: 675 YRGVCKWFNSKNMHGFITPSESHALDPGETDVFCYAEDLAPGTTHADMTTGDPVEYGLGT 734

Query: 59  NDANGKYSAENL 70
              +G+  A ++
Sbjct: 735 T-KSGRVKAVDV 745


>gi|330503459|ref|YP_004380328.1| hypothetical protein MDS_2545 [Pseudomonas mendocina NK-01]
 gi|328917745|gb|AEB58576.1| hypothetical protein MDS_2545 [Pseudomonas mendocina NK-01]
          Length = 240

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K ++  KG+GFI PE     G DVF H S +          G  V +     D  G
Sbjct: 7  KGRLKSWDDAKGFGFIQPE---NGGADVFAHISVMRGD--RRPQPGDDVLF-IEGRDQRG 60

Query: 64 KYSAENLKL 72
          +  AE+L+L
Sbjct: 61 RPRAEHLRL 69


>gi|170783067|ref|YP_001711401.1| putative cold shock protein [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|169157637|emb|CAQ02835.1| putative cold shock protein [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 127

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K+Y+ DKG+GFI    S++ G +VFLH SA+  +G+  +  G  + +      A
Sbjct: 1  MPTGKVKFYDEDKGFGFI----SSDDGQEVFLHASAL-PSGVAGVKAGTRLEFGI----A 51

Query: 62 NGKYSAENLK 71
          +GK  A+ L 
Sbjct: 52 DGKRGAQALS 61


>gi|125526345|gb|EAY74459.1| hypothetical protein OsI_02348 [Oryza sativa Indica Group]
          Length = 98

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K ++   G+ FITP+   +  +D+F+H+S++   G  +L +  ++       D +G
Sbjct: 7  KGMVKGFDATNGFSFITPD---DGSEDLFIHQSSLKFDGYRSLNDDDVIELSVGSGD-DG 62

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 63 RTKAVDVT 70


>gi|259503042|ref|ZP_05745944.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259168908|gb|EEW53403.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 67

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K ++  KG+GFIT     E    +F+H S +       L  G  V+   VQ   
Sbjct: 1  MLEGKVKSFDEQKGWGFITVPQEGE----IFVHYSGIEGQHRRVLHPGDRVSLVVVQG-K 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGPQAAHV 63


>gi|260577276|ref|ZP_05845250.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
 gi|259020520|gb|EEW23842.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2]
          Length = 177

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GFI  +   E G D+ LH + + + G  ++ +G  ++ + VQ    G+
Sbjct: 13 GHVKWFDPTKGFGFIVAD---EGGPDILLHANVLRNYGQSSVADGTAISVN-VQATQRGR 68

Query: 65 YSAENLKLVPK 75
           + E L++ P 
Sbjct: 69 QAVEVLEIEPP 79



 Score = 57.7 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  E   DVF+H   +  +G  +L  G+ V    + +   G+ 
Sbjct: 107 RVKWFDKGKGFGFANVFGRPE---DVFVHVEVLRLSGFADLAAGEAVGLRIL-DGKRGRM 162

Query: 66  SAENLK 71
           + + + 
Sbjct: 163 AVQVVS 168


>gi|301170784|dbj|BAJ12006.1| y box protein [Samia cynthia walkeri]
          Length = 139

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+        + ++ +G+ V +  V  +
Sbjct: 15 GTVKWFNVKSGYGFI---NRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 71

Query: 61 ANGKYSAEN 69
            G  +A  
Sbjct: 72 -KGYEAARV 79


>gi|227504265|ref|ZP_03934314.1| cold shock protein [Corynebacterium striatum ATCC 6940]
 gi|227199152|gb|EEI79200.1| cold shock protein [Corynebacterium striatum ATCC 6940]
          Length = 126

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ DKG+GF+    S    +DV++ R+ V   G+  L +GQ + +D+     
Sbjct: 1  MPIGKVKWFDADKGFGFV----SNPGDEDVYVGRN-VLPEGVDELVQGQRIEFDFAAGRR 55

Query: 62 NGKYSAENLKLV 73
               A  +K++
Sbjct: 56 G--PQALRVKVL 65


>gi|112982792|ref|NP_001036897.1| Y-box protein [Bombyx mori]
 gi|49532669|dbj|BAD26606.1| Y-box protein [Bombyx mori]
          Length = 259

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
          G++KW+N   GYGFI      ++ +DVF+H++A+A       + ++ +G+ V +  V  +
Sbjct: 40 GTVKWFNVKSGYGFI---NRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96

Query: 61 AN 62
            
Sbjct: 97 KG 98


>gi|148273654|ref|YP_001223215.1| putative cold shock protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|147831584|emb|CAN02552.1| putative cold shock protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
          Length = 127

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K+Y+ DKG+GFI    S++ G +VFLH SA+  +G+  +  G  + +      A
Sbjct: 1  MPTGKVKFYDEDKGFGFI----SSDDGQEVFLHASAL-PSGVAGVKAGTRLEFGI----A 51

Query: 62 NGKYSAENLK 71
          +GK  A+ L 
Sbjct: 52 DGKRGAQALS 61


>gi|330508303|ref|YP_004384731.1| cold shock DNA binding domain-containing protein [Methanosaeta
          concilii GP-6]
 gi|328929111|gb|AEB68913.1| cold shock DNA binding domain protein [Methanosaeta concilii
          GP-6]
          Length = 64

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  K +GFI  +     G D F+H + +       +TEG  V+++ V+ + 
Sbjct: 1  MVSGTVKFFNRTKRFGFIAGD----DGKDYFVHATGLMPD--VTITEGDKVSFEVVEGEK 54

Query: 62 NGK 64
            K
Sbjct: 55 GPK 57


>gi|241190702|ref|YP_002968096.1| cold shock protein [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196108|ref|YP_002969663.1| cold shock protein [Bifidobacterium animalis subsp. lactis DSM
          10140]
 gi|240249094|gb|ACS46034.1| cold shock protein [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250662|gb|ACS47601.1| cold shock protein [Bifidobacterium animalis subsp. lactis DSM
          10140]
 gi|295793691|gb|ADG33226.1| cold shock protein [Bifidobacterium animalis subsp. lactis V9]
          Length = 147

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G I+W++  KGYGFI  +     G DVFL ++A+   G+ N  +G  V Y  ++ + 
Sbjct: 19 MPSGRIRWFDAKKGYGFIAGD----DGKDVFLPQTAL-PQGVRNPRKGAKVEYSVIEGNR 73

Query: 62 N 62
           
Sbjct: 74 G 74


>gi|163753583|ref|ZP_02160706.1| cold shock protein, DNA-binding [Kordia algicida OT-1]
 gi|161325797|gb|EDP97123.1| cold shock protein, DNA-binding [Kordia algicida OT-1]
          Length = 64

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++K++N DKG+GFIT +   ++G D+F+H S +       L     V+Y+  +     
Sbjct: 2  TGTVKFFNEDKGFGFITND---DTGKDIFVHVSNLNGL---VLNSDDRVSYEEEEGRKG- 54

Query: 64 KYSAENLKLVP 74
             A  ++++ 
Sbjct: 55 -MVATQVQIIE 64


>gi|149278086|ref|ZP_01884225.1| cold shock protein [Pedobacter sp. BAL39]
 gi|149231284|gb|EDM36664.1| cold shock protein [Pedobacter sp. BAL39]
          Length = 63

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KG+GFI P         +F+H + + +     + E   VTYD  +   
Sbjct: 1  MQEGVVKFFNETKGFGFIIPNSGESE---IFVHSTGLLAD----IRENDKVTYDVEEGRK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|83594791|ref|YP_428543.1| cold-shock DNA-binding protein family protein [Rhodospirillum
          rubrum ATCC 11170]
 gi|83577705|gb|ABC24256.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
          11170]
          Length = 210

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            ++KW+N  KG+GF+     ++   D FLH S +  AG   L EG  +  D       
Sbjct: 6  TATVKWFNATKGFGFV---RVSDGEPDAFLHISVLQRAGYSELPEGATIVCDLAPGQKG 61



 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +K+++ DKG+GF+ P+G    G DV++    +   G+  L +GQ V     +    G 
Sbjct: 147 GVVKFFSADKGFGFVVPDG---GGKDVYVGSRTLQDCGVSVLEQGQRVRMSI-RMGKKGP 202

Query: 65  YS 66
            +
Sbjct: 203 MA 204


>gi|84515605|ref|ZP_01002967.1| cold shock DNA-binding domain protein [Loktanella vestfoldensis
          SKA53]
 gi|84510888|gb|EAQ07343.1| cold shock DNA-binding domain protein [Loktanella vestfoldensis
          SKA53]
          Length = 175

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KG+GF+  E     G D+ LH + + + G  ++ +G  +    VQ+   G
Sbjct: 13 QGQVKWFDPTKGFGFVIAEL---GGPDILLHANVLRNFGQGSVVDGSRIDL-MVQDTQRG 68

Query: 64 KYSAENLKLVPKSSN 78
            + E + + P  ++
Sbjct: 69 LQAVEVISITPPHAD 83



 Score = 57.3 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    GS++   DVF+H   +  +GL +L  G+ +    V +   G+ 
Sbjct: 108 RVKWFDKAKGFGFANVFGSSD---DVFIHIEVLRRSGLSDLQSGEAIGLRLV-DGERGRM 163

Query: 66  SAENL 70
           + + +
Sbjct: 164 AIDIV 168


>gi|329850706|ref|ZP_08265551.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
 gi|328841021|gb|EGF90592.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum
          C19]
          Length = 187

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 5  GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G +KW++  KGYGFI P + +  S  DV LH S++   G  +  EG  +T    +    
Sbjct: 20 GHVKWFDAAKGYGFIVPQDATLTSTRDVLLHISSLRDLGRDSAHEGAKITCKIAKRSKG 78



 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +   +IKW+N  KGYGF+          D+F+H   +   GL ++ +G  +   + +   
Sbjct: 118 LEAATIKWFNRTKGYGFVVR---GNDPTDIFIHIETLRRYGLEDVQQGDTIMVRFGEGPK 174

Query: 62  N 62
            
Sbjct: 175 G 175


>gi|38233375|ref|NP_939142.1| cold shock protein B [Corynebacterium diphtheriae NCTC 13129]
 gi|38199635|emb|CAE49294.1| cold shock protein B [Corynebacterium diphtheriae]
          Length = 129

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G + WY+ DKG+GF+    S   GDD F+    V   G+  L +GQ V +DYV    
Sbjct: 1  MPQGKVLWYDVDKGFGFV----SNPEGDDCFV-SKDVLPQGVQKLEKGQRVEFDYVARGR 55

Query: 62 NGKYSAENLKLV 73
               A  +K++
Sbjct: 56 G--PQALRIKVL 65


>gi|323454256|gb|EGB10126.1| hypothetical protein AURANDRAFT_62693 [Aureococcus anophagefferens]
          Length = 137

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 8/75 (10%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            H G ++WY   K YGFI  +G++ +  D+F+H S +       L  G  V++  V  + 
Sbjct: 38  RHTGVVRWYTEKKHYGFIESKGASAT--DLFVHSSELEEP----LRAGDTVSF--VIGER 89

Query: 62  NGKYSAENLKLVPKS 76
            G+ +A  +++V ++
Sbjct: 90  RGRSAATKVEVVERA 104


>gi|309774677|ref|ZP_07669701.1| cold-shock domain family protein [Erysipelotrichaceae bacterium
          3_1_53]
 gi|308917577|gb|EFP63293.1| cold-shock domain family protein [Erysipelotrichaceae bacterium
          3_1_53]
          Length = 86

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G+  W++ +KGYGF+  +    S     +H + +   G   L  GQ VTY+ ++ +    
Sbjct: 12 GTCIWFSDEKGYGFLLSDDGVSSM----VHYTDIKEPGFKRLYRGQRVTYEELETERG-- 65

Query: 65 YSAENLK 71
           SA  +K
Sbjct: 66 RSARRVK 72


>gi|161522615|ref|YP_001585544.1| cold-shock DNA-binding domain-containing protein [Burkholderia
          multivorans ATCC 17616]
 gi|160346168|gb|ABX19252.1| cold-shock DNA-binding domain protein [Burkholderia multivorans
          ATCC 17616]
          Length = 193

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW++ DKG+GFI  E +     D F H S V  A      EG +V +D   ++  G
Sbjct: 2  RGTVKWFSKDKGHGFIYGESAV----DYFFHVSDVVGA--DAPREGDIVEFDAT-SNKRG 54

Query: 64 KYSAENLKLVPKS 76
            +A  +++V + 
Sbjct: 55 PRAAT-VRIVERQ 66


>gi|322368663|ref|ZP_08043230.1| cold shock protein [Haladaptatus paucihalophilus DX253]
 gi|320551394|gb|EFW93041.1| cold shock protein [Haladaptatus paucihalophilus DX253]
          Length = 64

 Score = 63.8 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI  + + +   DVF H   V   G  +L EGQ V +D  Q D 
Sbjct: 1  MAKGTVTFFNDTGGYGFIETDDADD---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54

Query: 62 NGKYSAENLKLV 73
            +  A NL+ +
Sbjct: 55 GPR--ATNLQRL 64


>gi|71064869|ref|YP_263596.1| guanine-specific ribonuclease [Psychrobacter arcticus 273-4]
 gi|71037854|gb|AAZ18162.1| possible guanine-specific ribonuclease with a cold-shock
          DNA-binding domain [Psychrobacter arcticus 273-4]
          Length = 247

 Score = 63.8 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G IK +N DKGYGFI  +  +E   DVF H  +V  A    ++EGQ V ++  +ND 
Sbjct: 1  MQSGKIKHWNSDKGYGFIDVDNQSE---DVFFHIKSVQMA--QPISEGQRVYFNSERNDK 55

Query: 62 NGKYSAEN 69
          N   + E 
Sbjct: 56 NQLRATEV 63


>gi|149278198|ref|ZP_01884336.1| cold shock protein [Pedobacter sp. BAL39]
 gi|255529920|ref|YP_003090292.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366]
 gi|149230964|gb|EDM36345.1| cold shock protein [Pedobacter sp. BAL39]
 gi|255342904|gb|ACU02230.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366]
          Length = 63

 Score = 63.8 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI P        ++F+H + +    +  + E   V YD V++  
Sbjct: 1  MQEGTVKFFNVTKGFGFIIP---ANGDSEIFVHSTGL----IDEIRENDKVEYD-VESGK 52

Query: 62 NGKYSAENLKLV 73
           G  +A N+K++
Sbjct: 53 KG-LNAINVKVI 63


>gi|332233044|ref|XP_003265713.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein A-like, partial
           [Nomascus leucogenys]
          Length = 362

 Score = 63.8 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+ + ++ V   
Sbjct: 81  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGENLNFEAVFLF 137

Query: 61  ANGKYSAENLK 71
           ++    A N+ 
Sbjct: 138 SSQGAEAANVT 148


>gi|324518130|gb|ADY47012.1| Y-box-binding protein 2-B [Ascaris suum]
          Length = 323

 Score = 63.8 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
            G +KWY+    YGFI  +   +  +DVF+H++A+A +      L  L +G+ V +D V+
Sbjct: 48  TGKVKWYSVRYHYGFIARDD--DRANDVFVHQTAIAKSRIVKYYLRTLGDGEEVVFDIVE 105

Query: 59  NDANGKYSAEN 69
               G  +A  
Sbjct: 106 G-KQGPEAANV 115


>gi|327404541|ref|YP_004345379.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
          16823]
 gi|327320049|gb|AEA44541.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
          16823]
          Length = 63

 Score = 63.8 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 10/71 (14%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFI  E       D+F+H + +       + E   VTYD  +N  
Sbjct: 1  MNKGTVKFFNDAKGFGFIKGENE----QDIFVHATGLNQD----IRENDNVTYD-TENGR 51

Query: 62 NGKYSAENLKL 72
          NG  +A N+ L
Sbjct: 52 NG-LNAVNVSL 61


>gi|308176351|ref|YP_003915757.1| cold shock protein [Arthrobacter arilaitensis Re117]
 gi|307743814|emb|CBT74786.1| putative cold shock protein [Arthrobacter arilaitensis Re117]
          Length = 127

 Score = 63.8 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY   KG+GFIT     E G +++++ +A+   G+ +L  G  + +   +   
Sbjct: 1  MPSGKVKWYEKAKGFGFIT----AEDGKEIYVNAAAL-PEGVHDLRPGTRLEFGVAEGRR 55

Query: 62 NGKYSAENLKLVPKS 76
               A +L+L+ ++
Sbjct: 56 G--PQALSLRLLEEA 68


>gi|159044337|ref|YP_001533131.1| putative cold shock protein [Dinoroseobacter shibae DFL 12]
 gi|157912097|gb|ABV93530.1| putative cold shock protein [Dinoroseobacter shibae DFL 12]
          Length = 173

 Score = 63.8 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G +KW++  KG+GF+   G+ E   D+F+H   +   G  +L  G+ V     +++ 
Sbjct: 100 MVPGRVKWFDKVKGFGFLNVFGADE---DIFVHMDVLRRCGFSDLQAGEAVAVRIGESE- 155

Query: 62  NGKYSAENLK 71
            G+ + E L 
Sbjct: 156 RGRLALEVLS 165



 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++KW++P KG+GF+  E     G D+ LH + + + G  ++ +G  +    VQ    G 
Sbjct: 13 GTVKWFDPKKGFGFVVGEA---DGPDILLHANVLRNFGQSSVADGSQIQIR-VQETPRGI 68

Query: 65 YSAENLKLVPKS 76
           + E + + P  
Sbjct: 69 QAVEVVAITPPE 80


>gi|188582438|ref|YP_001925883.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
 gi|179345936|gb|ACB81348.1| cold-shock DNA-binding domain protein [Methylobacterium populi
          BJ001]
          Length = 181

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKW++  KG+GFI P+   +   DV LH + +   G    +EG  +  +  + +  G 
Sbjct: 18 GRIKWFDVSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEATRRE-RGW 73

Query: 65 YSAENLKL 72
           +   + L
Sbjct: 74 QAFRVVSL 81



 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 9/69 (13%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64
           +KW+N  +G+GF++     +   D+F+H   +   G+  L  G+ V    V+  + + G 
Sbjct: 112 VKWFNRLRGFGFLSR---GDGTPDIFVHMETLRRYGIAELKPGEQV---LVRYGDGSKGA 165

Query: 65  YSAENLKLV 73
            +AE ++LV
Sbjct: 166 MAAE-VRLV 173


>gi|119963261|ref|YP_946802.1| cold shock protein [Arthrobacter aurescens TC1]
 gi|119950120|gb|ABM09031.1| putative cold shock protein [Arthrobacter aurescens TC1]
          Length = 127

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF+      E G +VFL ++++  AG+  L  G  V +       
Sbjct: 1  MPTGKVKWYDKEKGFGFLA----AEDGQEVFLPKTSL-PAGVTELKAGTRVEFGVADGRR 55

Query: 62 NGKYSAENLKLVPKS 76
               A  L+++ K+
Sbjct: 56 G--AQALGLRVLEKT 68


>gi|268564326|ref|XP_002639074.1| C. briggsae CBR-CEY-2 protein [Caenorhabditis briggsae]
          Length = 256

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KWY+  + YGFI+     +   D+F+H++A+A +      L  L + + + +D V+
Sbjct: 62  QGKVKWYSVLRRYGFISR---NDGEKDIFVHQTAIAKSDTEKFYLRTLADEEDIVFDLVE 118

Query: 59  NDANGKYSAEN 69
              NG  +A  
Sbjct: 119 G-KNGPEAANV 128


>gi|159037812|ref|YP_001537065.1| cold-shock DNA-binding domain-containing protein [Salinispora
          arenicola CNS-205]
 gi|157916647|gb|ABV98074.1| cold-shock DNA-binding domain protein [Salinispora arenicola
          CNS-205]
          Length = 138

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G+I  ++  +GYGFI P G    GDDVF+H +         +  G  V+Y+ VQ++ 
Sbjct: 1  MEKGTIVRFDDVRGYGFIAPFG---GGDDVFVHANDF-GDQRHAVAAGMRVSYEVVQSER 56

Query: 62 NGKYSAENLKLVPKSS 77
            K ++  L+  P S 
Sbjct: 57 GLKVASVVLESAPASG 72


>gi|313204176|ref|YP_004042833.1| cold-shock DNA-binding protein family [Paludibacter
          propionicigenes WB4]
 gi|312443492|gb|ADQ79848.1| cold-shock DNA-binding protein family [Paludibacter
          propionicigenes WB4]
          Length = 63

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFI+ +GS +     F+H S +    +  + EG  V +D  +   
Sbjct: 1  MSKGTVKFFNESKGFGFISEDGSKKEH---FVHISGL----IDQIREGDTVEFDLQEGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|242247447|ref|NP_001156041.1| protein lin-28 homolog A [Ovis aries]
 gi|239736495|gb|ACS12986.1| RNA-binding protein LIN-28 [Ovis aries]
          Length = 209

 Score = 63.4 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+G ++         +   DVF+H+S +   G  +L EG+ V + + ++ 
Sbjct: 42  GICKWFNVRMGFGSLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|163752832|ref|ZP_02159956.1| cold shock protein [Kordia algicida OT-1]
 gi|161326564|gb|EDP97889.1| cold shock protein [Kordia algicida OT-1]
          Length = 63

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG++K++N  KG+GFI  EGS +     F+H S +    +  + +G  V ++  +   
Sbjct: 1  MSRGTVKFFNDTKGFGFIVEEGSNKEH---FVHISGL----IDEVRQGDEVEFELTEGRK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|269957706|ref|YP_003327495.1| cold-shock DNA-binding domain-containing protein [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269306387|gb|ACZ31937.1| cold-shock DNA-binding domain protein [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 127

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ ++G+GFI  +     G +VFLH SA+      N   G  V Y       
Sbjct: 1  MPTGKVKWFDSERGFGFIAGD----DGGEVFLHASALPPDA-ANPKPGTRVDYGVADGRR 55

Query: 62 NGKYSAENL 70
               A  +
Sbjct: 56 GPSALAVTV 64


>gi|258510935|ref|YP_003184369.1| cold-shock DNA-binding domain-containing protein
          [Alicyclobacillus acidocaldarius subsp. acidocaldarius
          DSM 446]
 gi|257477661|gb|ACV57980.1| cold-shock DNA-binding domain protein [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 120

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 12/79 (15%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA------SAGLFNLTEGQLVTYD 55
          +  G +K +  ++G+G+I      E G+DV++H SA+         G   L +GQLV +D
Sbjct: 1  MVEGIVKEWRDEEGFGWI----RAEDGEDVWVHFSAILPHPDRFPRGYRFLRKGQLVEFD 56

Query: 56 YVQNDANG--KYSAENLKL 72
           V N  +   + SA N+ +
Sbjct: 57 LVTNPHSAEQRRSARNVVV 75


>gi|17555742|ref|NP_499393.1| Y-box family member (cey-4) [Caenorhabditis elegans]
 gi|3874932|emb|CAA97783.1| C. elegans protein Y39A1C.3, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|3880813|emb|CAA19509.1| C. elegans protein Y39A1C.3, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 294

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
           +G +KW++    YGF+  +  T+  +D F+H++A+  +      L  L + + V +D V+
Sbjct: 90  KGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVE 149

Query: 59  NDANGKYSAEN 69
               G  +A  
Sbjct: 150 G-LKGPEAANV 159


>gi|321477873|gb|EFX88831.1| hypothetical protein DAPPUDRAFT_311200 [Daphnia pulex]
          Length = 322

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
           G +KW+N   GYGFI      ++ +D+F+H++A++       + ++ +G++V +D V  
Sbjct: 25 TGVVKWFNVKSGYGFI---NRNDTKEDIFVHQTAISRNNPRKAVRSVGDGEIVEFDVVVG 81

Query: 60 DANGKYSAEN 69
          +  G  +A  
Sbjct: 82 E-KGHEAANV 90


>gi|68535487|ref|YP_250192.1| putative cold shock protein [Corynebacterium jeikeium K411]
 gi|260579770|ref|ZP_05847627.1| cold-shock domain family protein [Corynebacterium jeikeium ATCC
          43734]
 gi|68263086|emb|CAI36574.1| putative cold shock protein [Corynebacterium jeikeium K411]
 gi|258602122|gb|EEW15442.1| cold-shock domain family protein [Corynebacterium jeikeium ATCC
          43734]
          Length = 127

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ D+GYGF+    S    +DV++  S V   G+  L +GQ + Y+++    
Sbjct: 1  MPTGKVKWYDADRGYGFV----SNPGDEDVYVG-SQVLPDGVTELVKGQRIEYEFIAGRR 55

Query: 62 NGK 64
            +
Sbjct: 56 GPQ 58


>gi|255263765|ref|ZP_05343107.1| cold shock DNA-binding domain protein [Thalassiobium sp. R2A62]
 gi|255106100|gb|EET48774.1| cold shock DNA-binding domain protein [Thalassiobium sp. R2A62]
          Length = 166

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++P KG+GF+  +   + G D+ LH + + + G  ++ +G  +    + +   G
Sbjct: 2  RGLVKWFDPSKGFGFVVAD---DGGPDILLHANVLRNFGQSSVADGSAIELSVI-DTERG 57

Query: 64 KYSAENLKLVPKS 76
            +AE + + P  
Sbjct: 58 IQAAEIITITPPE 70



 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G ++   D+F+H   +  +GL +L  G+ +    V +   G+ 
Sbjct: 97  RVKWFDKSKGFGFANVFGVSD---DIFIHVEVLRRSGLADLQYGEAIGVRVV-DGKRGRM 152

Query: 66  SAEN 69
           +A+ 
Sbjct: 153 AAQV 156


>gi|256850939|ref|ZP_05556328.1| cold shock domain-containing protein CspD [Lactobacillus jensenii
          27-2-CHN]
 gi|260661153|ref|ZP_05862067.1| cold shock domain-containing protein CspD [Lactobacillus jensenii
          115-3-CHN]
 gi|282934148|ref|ZP_06339426.1| DNA-binding cold-shock protein [Lactobacillus jensenii 208-1]
 gi|297205819|ref|ZP_06923214.1| cold shock domain protein CspD [Lactobacillus jensenii JV-V16]
 gi|256616001|gb|EEU21189.1| cold shock domain-containing protein CspD [Lactobacillus jensenii
          27-2-CHN]
 gi|260548090|gb|EEX24066.1| cold shock domain-containing protein CspD [Lactobacillus jensenii
          115-3-CHN]
 gi|281301762|gb|EFA94028.1| DNA-binding cold-shock protein [Lactobacillus jensenii 208-1]
 gi|297148945|gb|EFH29243.1| cold shock domain protein CspD [Lactobacillus jensenii JV-V16]
          Length = 73

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K ++   G+GFI  + +  S    F+  +A+  AG  +L  GQ V Y   Q   
Sbjct: 1  MRTGTVKQFDSAAGFGFIDDDLTKAS---YFVFYTAIKEAGYKSLEIGQRVRYQLAQGKK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|260433622|ref|ZP_05787593.1| cold shock DNA-binding domain protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417450|gb|EEX10709.1| cold shock DNA-binding domain protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 175

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G +E   DVFLH   +  +GL +L  G+ +    + +   G+ 
Sbjct: 107 RVKWFDKAKGFGFANVFGRSE---DVFLHIEVLRRSGLADLQPGEALAMRVI-DGKRGRM 162

Query: 66  SAENL 70
           +A+ L
Sbjct: 163 AAQVL 167



 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++P KGYGF+  +   E G D+ LH + + + G  ++ +G  +          G
Sbjct: 12 RGHVKWFDPSKGYGFVVSD---EGGPDILLHVNVLRNFGQSSVADGAGIEI-MTHRTDRG 67

Query: 64 KYSAENLKLVPKS 76
            + E + + P  
Sbjct: 68 VQAVEVISIDPPE 80


>gi|227544866|ref|ZP_03974915.1| major cold shock protein [Lactobacillus reuteri CF48-3A]
 gi|227185140|gb|EEI65211.1| major cold shock protein [Lactobacillus reuteri CF48-3A]
          Length = 81

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +K ++  KG+GFIT     E    +F+H S +       L   + V+   VQ   
Sbjct: 15 MLKGKVKSFDEQKGWGFITVPHEGE----IFVHYSGIEGTRRRILHPDEEVSLVIVQGQ- 69

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 70 KGPQAAHV 77


>gi|88803297|ref|ZP_01118823.1| cold shock protein [Polaribacter irgensii 23-P]
 gi|88780863|gb|EAR12042.1| cold shock protein [Polaribacter irgensii 23-P]
          Length = 63

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFIT EG+ E     F+H S +       + E   V +D  Q+  
Sbjct: 1  MNKGTVKFFNESKGFGFITEEGNNEEH---FVHVSGLVDE----IRENDEVEFDL-QDGR 52

Query: 62 NGKYSAENLKLV 73
           G  +A N++++
Sbjct: 53 KG-LNAVNVRVI 63


>gi|158318882|ref|YP_001511390.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
          EAN1pec]
 gi|158114287|gb|ABW16484.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
          Length = 72

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K+YN ++G+G I+       G D ++  S +   G   L  G  V +DY Q   
Sbjct: 1  MTKGTVKFYNAERGWGAISSPDLPP-GFDAWVGFSMIEMDGYRFLEAGDRVEFDYEQVRQ 59

Query: 62 N 62
          +
Sbjct: 60 D 60


>gi|312092494|ref|XP_003147356.1| cold-shock DNA-binding domain-containing protein [Loa loa]
 gi|307757478|gb|EFO16712.1| cold-shock DNA-binding domain-containing protein [Loa loa]
          Length = 227

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKY 65
          +N   GYGFI      ++GDD+F+H++AV        L +L +G+ V +D V+    G  
Sbjct: 1  FNVKNGYGFI---NRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQ-KGPE 56

Query: 66 SAEN 69
          +A  
Sbjct: 57 AANV 60


>gi|157373787|ref|YP_001472387.1| cold-shock DNA-binding domain-containing protein [Shewanella
          sediminis HAW-EB3]
 gi|157316161|gb|ABV35259.1| cold-shock DNA-binding domain protein [Shewanella sediminis
          HAW-EB3]
          Length = 217

 Score = 63.4 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 2  VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + RG+ ++W N +KG+GFI PE    +G DVF+H SA+       +  G  + Y   +  
Sbjct: 1  MERGTLVRW-NDEKGFGFIKPEAG--NGKDVFIHISALKHMARKPMV-GDAIQY-LTEQQ 55

Query: 61 ANGKYSA 67
          A+GK  A
Sbjct: 56 ADGKVKA 62


>gi|319404271|emb|CBI77864.1| cold shock protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 193

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH + +   G     EG  V     Q +  
Sbjct: 30 GVIKWFDGSKGYGFIIPDLP--GLPDILLHVTVMRRDGFQTALEGAKVICVVKQTERG 85



 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N +KG+GF++     +  +D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 119 LERAIVKWFNREKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 174

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 175 KGLMTAE 181


>gi|220911683|ref|YP_002486992.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
 gi|219858561|gb|ACL38903.1| cold-shock DNA-binding domain protein [Arthrobacter
          chlorophenolicus A6]
          Length = 127

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ DKG+GF+      E G +VFL +S++   G+  L  G  V +      A
Sbjct: 1  MPTGKVKWYDKDKGFGFLA----GEDGQEVFLPKSSL-PEGVTELKAGTRVEFGV----A 51

Query: 62 NGKYSAENLKL 72
          +G+  A+ L L
Sbjct: 52 DGRKGAQALGL 62


>gi|99080990|ref|YP_613144.1| cold-shock DNA-binding protein family protein [Ruegeria sp.
          TM1040]
 gi|99037270|gb|ABF63882.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040]
          Length = 179

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++P KGYGFI      + G D+ LH + + + G  ++ +G  +          G
Sbjct: 12 RGLVKWFDPAKGYGFIV---CPDDGPDILLHVNVLRNFGQSSVADGAGIEV-VTHRTDRG 67

Query: 64 KYSAENLKLVPKSSN 78
            + E + + P    
Sbjct: 68 VQAVEIVSITPPERE 82



 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  E   DVFLH   +  +GL ++  G+ +    + +   G+ 
Sbjct: 107 RVKWFDKAKGFGFANVFGRDE---DVFLHVEVLRQSGLSDVQSGEALAMRVI-DGKRGRM 162

Query: 66  SAENL 70
           + + L
Sbjct: 163 AVDVL 167


>gi|294636900|ref|ZP_06715228.1| cold-shock DNA-binding domain protein [Edwardsiella tarda ATCC
          23685]
 gi|291089891|gb|EFE22452.1| cold-shock DNA-binding domain protein [Edwardsiella tarda ATCC
          23685]
          Length = 69

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+P  G G I+P    + GDD+++ R+A+AS+    L EGQ V +    +  
Sbjct: 3  LKMGFVKWYDPSAGLGVISP---LDGGDDLYVSRTAIASSRNKLLREGQRVEF----STP 55

Query: 62 NGKYS--AENL 70
           G+ S  AE++
Sbjct: 56 RGRRSQIAEDV 66


>gi|39935591|ref|NP_947867.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
           palustris CGA009]
 gi|39649444|emb|CAE27966.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009]
          Length = 235

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KGYGF+ P+       DV LH + +   G     EG  +  + VQ  A G 
Sbjct: 71  GVIKWFDASKGYGFVVPD---NGWPDVLLHVTVLRRDGYQTAYEGARIVVECVQR-AKGY 126

Query: 65  YSAENLKLVPKSS 77
            +   + +   ++
Sbjct: 127 QAFRIVSMDESTA 139



 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ  LV +     
Sbjct: 160 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFG---P 213

Query: 60  DANGKYSAE 68
            + G  +AE
Sbjct: 214 GSKGMMAAE 222


>gi|238063669|ref|ZP_04608378.1| DNA binding protein [Micromonospora sp. ATCC 39149]
 gi|237885480|gb|EEP74308.1| DNA binding protein [Micromonospora sp. ATCC 39149]
          Length = 150

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +  ++  +GYGFI P+G    GDDVF+H + V       L  G  V Y+ V+N+ 
Sbjct: 1  MLTGRVVRFDEVRGYGFIAPDG---GGDDVFVHANTVDGDKWA-LGPGVPVEYEAVENER 56

Query: 62 NGKYSAENLKLVPKS 76
            K  A  ++++  +
Sbjct: 57 GPK--ALTVRVLGPA 69


>gi|322815184|gb|EFZ23897.1| mitochondrial RNA binding protein, putative [Trypanosoma cruzi]
          Length = 142

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 7/71 (9%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60
          ++G +  +   +G+GFI  +   +     F+H SA+ +   G  +LT GQ V ++     
Sbjct: 18 NKGKVISWMSGRGFGFIEDDTDKKQH---FVHFSALQTETGGFRSLTVGQEVEFEVA--S 72

Query: 61 ANGKYSAENLK 71
           +G+  AEN+ 
Sbjct: 73 QDGRTRAENVT 83


>gi|119628220|gb|EAX07815.1| lin-28 homolog (C. elegans), isoform CRA_b [Homo sapiens]
          Length = 214

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHR-----SAVASAGLFNLTEGQLVTYD 55
           G  KW+N   G+GF++         +   DVF+H+     S +   G  +L EG+ V + 
Sbjct: 42  GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQVRLIPSKLHMEGFRSLKEGEAVEFT 101

Query: 56  YVQNDAN 62
           + ++   
Sbjct: 102 FKKSAKG 108


>gi|71422058|ref|XP_812012.1| mitochondrial RNA binding protein [Trypanosoma cruzi strain CL
          Brener]
 gi|70876741|gb|EAN90161.1| mitochondrial RNA binding protein, putative [Trypanosoma cruzi]
          Length = 142

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 7/71 (9%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60
          ++G +  +   +G+GFI  +   +     F+H SA+ +   G  +LT GQ V ++     
Sbjct: 18 NKGKVISWMSGRGFGFIEDDTDKKQH---FVHFSALQTETGGFRSLTVGQEVEFEVA--S 72

Query: 61 ANGKYSAENLK 71
           +G+  AEN+ 
Sbjct: 73 QDGRTRAENVT 83


>gi|319405712|emb|CBI79335.1| cold shock protein [Bartonella sp. AR 15-3]
          Length = 191

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH + +   G     EG  V     Q +  
Sbjct: 28 GVIKWFDGSKGYGFIIPDFP--GLPDILLHVTVMRRDGFQTALEGAKVICVVKQTERG 83



 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N +KG+GF++     +  +D+F+H   +   GL  L  GQ+V   + +   
Sbjct: 117 LERAIVKWFNREKGFGFLSR---GQGTEDIFIHMEILRRFGLAELRSGQVVLVRFGKG-K 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMTAE 179


>gi|192291180|ref|YP_001991785.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192284929|gb|ACF01310.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 235

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KGYGF+ P+       DV LH + +   G     EG  +  + VQ  A G 
Sbjct: 71  GVIKWFDASKGYGFVVPD---NGWPDVLLHVTVLRRDGYQTAYEGARIVVECVQR-AKGY 126

Query: 65  YSAENLKLVPKSS 77
            +   + +   ++
Sbjct: 127 QAFRIVSMDESTA 139



 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ  LV +     
Sbjct: 160 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFG---P 213

Query: 60  DANGKYSAE 68
            + G  +AE
Sbjct: 214 GSKGMMAAE 222


>gi|322511335|gb|ADX06644.1| putative cold-shock protein CspD [Organic Lake phycodnavirus]
          Length = 88

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GF+      E+G + F H S + + G   L  G+ V+ + +  D N K  
Sbjct: 4  VKWFNKRKGFGFV----LDETGTEYFCHHSDICNDGYKYLRAGEYVSGEVINMDGNKKKL 59

Query: 67 AENLKLVP 74
          ++    VP
Sbjct: 60 SKICPPVP 67


>gi|293396764|ref|ZP_06641040.1| cold shock protein [Serratia odorifera DSM 4582]
 gi|291421028|gb|EFE94281.1| cold shock protein [Serratia odorifera DSM 4582]
          Length = 73

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+  +GYG I+P    +  D++++ R A+A+    +L EGQ V +   ++ +
Sbjct: 7  LKMGRVKWYDQAEGYGVISP---VDGSDEIYVSRRAIANTKNKSLNEGQNVEFSIYRS-S 62

Query: 62 NGKYSAENL 70
          +G  +A+ +
Sbjct: 63 HGLSAADVI 71


>gi|315605858|ref|ZP_07880890.1| cold-shock DNA-binding domain protein [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315312556|gb|EFU60641.1| cold-shock DNA-binding domain protein [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 165

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G +++++ D+G+GFI  +     G DVFLH SA+ +    N   G  V Y    +  
Sbjct: 41  MPTGKVRFFDADRGFGFIAGD----DGADVFLHSSALPAD-HPNPRVGSRVEYSVA-DGR 94

Query: 62  NGKYSAENLKLVPKSSN 78
            G   A +++ + ++++
Sbjct: 95  KGPQ-ALSVRFLKETAS 110


>gi|218961622|ref|YP_001741397.1| cold-shock domain family protein [Candidatus Cloacamonas
          acidaminovorans]
 gi|167730279|emb|CAO81191.1| cold-shock domain family protein [Candidatus Cloacamonas
          acidaminovorans]
          Length = 74

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 8/74 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG---LFNLTEGQLVTYDYVQND 60
          +G +KW+N +KGYGFI  + + E     F+H  ++ +     L  L + +LVT+D ++ D
Sbjct: 6  KGKVKWFNKNKGYGFIITDDNKE----YFVHWKSIVTNSPRELKVLEQDELVTFDLMETD 61

Query: 61 ANGKYSAENLKLVP 74
            G  +   +++ P
Sbjct: 62 -KGIQAINIIRVNP 74


>gi|319407276|emb|CBI80917.1| cold shock protein [Bartonella sp. 1-1C]
          Length = 191

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+  +    D+ LH + +   G     EG  V     Q +  
Sbjct: 28 GVIKWFDGSKGYGFIIPDLPSL--PDILLHVTVMRRDGFQTALEGAKVICVVKQTERG 83



 Score = 60.3 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N +KG+GF++     +  +D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 117 LERAIVKWFNREKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMTAE 179


>gi|154507896|ref|ZP_02043538.1| hypothetical protein ACTODO_00381 [Actinomyces odontolyticus ATCC
          17982]
 gi|293190360|ref|ZP_06608792.1| cold-shock domain protein [Actinomyces odontolyticus F0309]
 gi|153797530|gb|EDN79950.1| hypothetical protein ACTODO_00381 [Actinomyces odontolyticus ATCC
          17982]
 gi|292820944|gb|EFF79899.1| cold-shock domain protein [Actinomyces odontolyticus F0309]
          Length = 125

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +++++ D+G+GFI  +     G DVFLH SA+ +    N   G  V Y    +  
Sbjct: 1  MPTGKVRFFDADRGFGFIAGD----DGADVFLHSSALPAD-HANPRVGARVEYSVA-DGR 54

Query: 62 NGKYSAENLKLVPKSSN 78
           G   A +++ + ++++
Sbjct: 55 KGPQ-ALSVRFLKETAS 70


>gi|125570752|gb|EAZ12267.1| hypothetical protein OsJ_02155 [Oryza sativa Japonica Group]
          Length = 98

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +K ++   G+ FITP+   +  +D+F+H+S++   G  +L +  ++      +D +G
Sbjct: 7  KGMVKGFDATNGFSFITPD---DGSEDLFIHQSSLKFDGYRSLNDDDVIELSVGSSD-DG 62

Query: 64 KYSAENLK 71
          +  A ++ 
Sbjct: 63 RTKAVDVT 70


>gi|294677870|ref|YP_003578485.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
          capsulatus SB 1003]
 gi|294476690|gb|ADE86078.1| cold-shock DNA-binding domain protein [Rhodobacter capsulatus SB
          1003]
          Length = 177

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE--GQLVTYDYVQNDAN 62
          G +KW++  KG+GFI      E G D+ LH + + + G  ++ +  G  V    VQ    
Sbjct: 13 GRVKWFDAGKGFGFI---LDGEGGPDILLHANVLRNFGQSSVADNAGIRV---LVQATPR 66

Query: 63 GKYSAENLKLVPKSSN 78
          G  + E L++ P  ++
Sbjct: 67 GAQAVEVLEISPPETD 82



 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  E   DVF+H   +  +G  +L  G+ V    ++    G+ 
Sbjct: 108 RVKWFDKGKGFGFANVFGRPE---DVFIHVEVLRRSGFADLAPGEAVCLRVIEG-RRGRM 163

Query: 66  SAE 68
           +A+
Sbjct: 164 AAQ 166


>gi|238855264|ref|ZP_04645583.1| cold-shock DNA-binding domain protein [Lactobacillus jensenii
          269-3]
 gi|260664623|ref|ZP_05865475.1| cold shock domain-containing protein CspD [Lactobacillus jensenii
          SJ-7A-US]
 gi|282932443|ref|ZP_06337868.1| cold-shock protein CspD [Lactobacillus jensenii 208-1]
 gi|313471917|ref|ZP_07812409.1| conserved domain protein [Lactobacillus jensenii 1153]
 gi|238832156|gb|EEQ24474.1| cold-shock DNA-binding domain protein [Lactobacillus jensenii
          269-3]
 gi|239529157|gb|EEQ68158.1| conserved domain protein [Lactobacillus jensenii 1153]
 gi|260561688|gb|EEX27660.1| cold shock domain-containing protein CspD [Lactobacillus jensenii
          SJ-7A-US]
 gi|281303392|gb|EFA95569.1| cold-shock protein CspD [Lactobacillus jensenii 208-1]
          Length = 73

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K ++   G+GFI  + +  S    F+  +A+   G  +L  GQ V Y   Q   
Sbjct: 1  MRTGTVKQFDSAAGFGFIDDDLTKAS---YFVFYTAIKENGYKSLEIGQRVRYQLAQGKK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|325962251|ref|YP_004240157.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323468338|gb|ADX72023.1| cold-shock DNA-binding protein family [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 127

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF+      E G +VFL +S++   G+  L  G  V +      A
Sbjct: 1  MPTGKVKWYDKEKGFGFLA----GEDGQEVFLPKSSL-PEGVTELKAGTRVEFGV----A 51

Query: 62 NGKYSAENLKL 72
          +G+  A+ L L
Sbjct: 52 DGRKGAQALGL 62


>gi|319898944|ref|YP_004159037.1| cold shock protein [Bartonella clarridgeiae 73]
 gi|319402908|emb|CBI76459.1| cold shock protein [Bartonella clarridgeiae 73]
          Length = 193

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+ S     D+ LH + +   G     EG  V     Q +  
Sbjct: 30 GVIKWFDGSKGYGFIVPDFS--DLPDILLHVTVMRRDGFQTALEGAKVVCVVKQTERG 85



 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N +KG+GF++     +  +D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 119 LERAIVKWFNREKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 174

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 175 KGLMTAE 181


>gi|227548331|ref|ZP_03978380.1| cold shock protein [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079649|gb|EEI17612.1| cold shock protein [Corynebacterium lipophiloflavum DSM 44291]
          Length = 127

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ DKG+GF     S    +DVF+ +  V   G+  L  GQ + +D+     
Sbjct: 1  MPVGKVKWYDADKGFGF----ASNPGDEDVFVGKK-VLPEGVEELVAGQRIEFDFAAGRR 55

Query: 62 NGKYSAENLKLV 73
               A  +K++
Sbjct: 56 G--PQALRVKVL 65


>gi|298208216|ref|YP_003716395.1| cold-shock DNA-binding domain protein [Croceibacter atlanticus
          HTCC2559]
 gi|83848137|gb|EAP86007.1| cold-shock DNA-binding domain protein [Croceibacter atlanticus
          HTCC2559]
          Length = 64

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI  EG+ E     F+H + +    +  + E   V ++  Q + 
Sbjct: 1  MQTGTVKFFNDTKGFGFIKEEGTNEEH---FVHVTGL----IDEIREDDRVEFELKQGNK 53

Query: 62 NGKYSAENLKLV 73
              +A N++++
Sbjct: 54 G--MNAVNVRVI 63


>gi|47563679|dbj|BAD20296.1| cold shock protein like [Pseudomonas fluorescens]
          Length = 37

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39
             G++KW+N  KGYGFI  E     G DVF+H  A+ 
Sbjct: 4  RETGNVKWFNDAKGYGFIQRE----DGKDVFVHYRAIR 37


>gi|259419058|ref|ZP_05742975.1| cold-shock DNA-binding protein family [Silicibacter sp.
          TrichCH4B]
 gi|259345280|gb|EEW57134.1| cold-shock DNA-binding protein family [Silicibacter sp.
          TrichCH4B]
          Length = 180

 Score = 62.7 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++P KGYGFI      ++G D+ LH + + + G  ++ +G  +          G
Sbjct: 12 RGLVKWFDPAKGYGFIV---CPDNGPDILLHVNVLRNFGQSSIADGAGIEV-VTHRTDRG 67

Query: 64 KYSAENLKLVPKSSN 78
            + E + + P    
Sbjct: 68 VQAVEIVSITPPERE 82



 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  E   DVFLH   +  +GL ++  G+ +    ++    G+ 
Sbjct: 107 RVKWFDKAKGFGFANVFGRDE---DVFLHVEVLRQSGLSDVQSGEALAMRVIEG-KRGRM 162

Query: 66  SAENL 70
           + + L
Sbjct: 163 AVDVL 167


>gi|55378476|ref|YP_136326.1| cold shock protein [Haloarcula marismortui ATCC 43049]
 gi|55231201|gb|AAV46620.1| cold shock protein [Haloarcula marismortui ATCC 43049]
          Length = 64

 Score = 62.7 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ ++N   GYGFI  E S E   DVF H   +      +L EGQ V ++  Q D 
Sbjct: 1  MATGTVDFFNDTGGYGFIDTEDSDE---DVFFHMEDIDG---PDLEEGQEVEFEIEQADK 54

Query: 62 NGKYSAENLKLV 73
            +  A+NL  +
Sbjct: 55 GPR--AKNLTRL 64


>gi|254494842|ref|ZP_01051872.2| 'cold-shock' DNA-binding protein [Polaribacter sp. MED152]
 gi|213690424|gb|EAQ41300.2| 'cold-shock' DNA-binding protein [Polaribacter sp. MED152]
          Length = 63

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFIT EG+ +     F+H S +       + E   V +D  Q+  
Sbjct: 1  MNKGTVKFFNESKGFGFITEEGTNKEH---FVHVSGLVDE----IRENDEVEFDL-QDGR 52

Query: 62 NGKYSAENLKLV 73
           G  +A N++++
Sbjct: 53 KG-LNAVNVRVL 63


>gi|330983247|gb|EGH81350.1| cold shock protein [Pseudomonas syringae pv. aptata str. DSM
          50252]
          Length = 36

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 4/37 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
             G++KW+N +KG+GFITP    +SGDD+F+H  A+
Sbjct: 4  RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAI 36


>gi|313126739|ref|YP_004037009.1| cold-shock DNA-binding protein family [Halogeometricum
          borinquense DSM 11551]
 gi|312293104|gb|ADQ67564.1| cold-shock DNA-binding protein family [Halogeometricum
          borinquense DSM 11551]
          Length = 64

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI  E S E   DVF H   V   G  +L EGQ V +D  Q D 
Sbjct: 1  MAKGTVAFFNDTGGYGFIESEDSDE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54

Query: 62 NGKYSAENLKLV 73
            +  A+NL+ +
Sbjct: 55 GPR--AKNLQRL 64


>gi|316934326|ref|YP_004109308.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315602040|gb|ADU44575.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 231

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G IKW++  KGYGF+ P+       DV LH + +   G     EG  +  + VQ  A G 
Sbjct: 67  GFIKWFDASKGYGFVVPD---NGWPDVLLHVTVLRRDGYQTAYEGARIVVECVQR-AKGY 122

Query: 65  YSAENLKLVPKSS 77
            +   + +   ++
Sbjct: 123 QAFRVVSMDESTA 135



 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59
           + R  +KW+N  +G+GF+T     E   D+F+H   +   G+  L  GQ  LV +     
Sbjct: 156 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFG---P 209

Query: 60  DANGKYSAE 68
            + G  +AE
Sbjct: 210 GSKGMMAAE 218


>gi|304385163|ref|ZP_07367509.1| CspA family cold shock transcriptional regulator [Pediococcus
          acidilactici DSM 20284]
 gi|304329357|gb|EFL96577.1| CspA family cold shock transcriptional regulator [Pediococcus
          acidilactici DSM 20284]
          Length = 73

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++  ++  KGYGFI      ++G+  F+H SAV S     L E ++V     +   
Sbjct: 4  LETGTVTSFDKTKGYGFIE----LDNGEKAFVHYSAVQSDDFKTLDENEVVQLMVAEGPK 59

Query: 62 N 62
           
Sbjct: 60 G 60


>gi|110667820|ref|YP_657631.1| cold shock protein [Haloquadratum walsbyi DSM 16790]
 gi|109625567|emb|CAJ51994.1| probable cold shock protein [Haloquadratum walsbyi DSM 16790]
          Length = 64

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI  E S E   DVF H   V   G  +L EGQ V +D  Q D 
Sbjct: 1  MAKGTVAFFNDTGGYGFIESEDSEE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54

Query: 62 NGKYSAENLKLV 73
            +  A NL+ +
Sbjct: 55 GPR--ATNLQRL 64


>gi|49474233|ref|YP_032275.1| cold shock protein [Bartonella quintana str. Toulouse]
 gi|49239737|emb|CAF26119.1| Cold shock protein [Bartonella quintana str. Toulouse]
          Length = 191

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N DKG+GF++     +  +D+F+H   +   GL  L  GQ+V   + +   
Sbjct: 117 LERAIVKWFNRDKGFGFLSR---GQGTEDIFVHMETLRRFGLAELRSGQVVLVRFGKG-K 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMTAE 179



 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH + +   G     EG  +     + +  
Sbjct: 28 GVIKWFDGSKGYGFIIPDLPNF--PDILLHVTVMRRDGFQTALEGAKIVCAVEKTERG 83


>gi|297517468|ref|ZP_06935854.1| cold shock-like protein CspC [Escherichia coli OP50]
          Length = 42

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          DVF+H SA+   G   L EGQ V ++  Q+   G  +A N+  +
Sbjct: 1  DVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKGP-AAVNVTAI 42


>gi|312869520|ref|ZP_07729675.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3]
 gi|311094967|gb|EFQ53256.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3]
          Length = 67

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K ++  KG+GFIT     E    +F+H S +       L     V+   VQ   
Sbjct: 1  MLEGKVKSFDEQKGWGFITVPHEGE----IFVHYSGIEGQHRRVLHPDDRVSLVIVQG-K 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGPQAAHV 63


>gi|320094620|ref|ZP_08026384.1| cold-shock domain family protein [Actinomyces sp. oral taxon 178
          str. F0338]
 gi|319978456|gb|EFW10035.1| cold-shock domain family protein [Actinomyces sp. oral taxon 178
          str. F0338]
          Length = 125

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 7/75 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +++++P++G+GFIT +  ++    VFLH SA+  AG  +   G  V Y    +  
Sbjct: 1  MPTGRVRFFDPERGFGFITGDDGSQ----VFLHSSAL-PAGGAHPRAGARVEYSVA-DGR 54

Query: 62 NGKYSAENLKLVPKS 76
           G   A ++++V ++
Sbjct: 55 KGPQ-ALSVRVVAEA 68


>gi|330885139|gb|EGH19288.1| cold shock protein [Pseudomonas syringae pv. glycinea str. race
          4]
          Length = 36

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 4/40 (10%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
          +N +KG+GFITP    +SGDD+F+H  A+ S G  +L EG
Sbjct: 1  FNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEG 36


>gi|51245919|ref|YP_065803.1| hypothetical protein DP2067 [Desulfotalea psychrophila LSv54]
 gi|50876956|emb|CAG36796.1| hypothetical cold-shock protein [Desulfotalea psychrophila LSv54]
          Length = 204

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G+IK +N +KGYGFITP+     G+DVFLH  A           GQ+++Y     D 
Sbjct: 1  MNFGTIKHWNDEKGYGFITPD---NGGNDVFLHIKAFKKRPHR-PEIGQVISYGTTSGD- 55

Query: 62 NGKYSAENLKLVPKSSN 78
           G+  A N++ +   S+
Sbjct: 56 KGRLRACNVQYMEDKSS 72


>gi|197284614|ref|YP_002150486.1| cold shock protein [Proteus mirabilis HI4320]
 gi|194682101|emb|CAR41685.1| putative cold shock protein [Proteus mirabilis HI4320]
          Length = 71

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ +KGYG I    + +   D+++++ A+A+     LTEGQ V +  ++  A
Sbjct: 5  LRMGRVKWFDNNKGYGLIV---AKDLEQDIYVNKKAIANTKNKALTEGQDVEFSVIKT-A 60

Query: 62 NGKYSAENL 70
           G  +A+ +
Sbjct: 61 AGLEAADVI 69


>gi|260808771|ref|XP_002599180.1| hypothetical protein BRAFLDRAFT_197924 [Branchiostoma floridae]
 gi|229284457|gb|EEN55192.1| hypothetical protein BRAFLDRAFT_197924 [Branchiostoma floridae]
          Length = 121

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY-DYVQND 60
           + RG +K +   KG+GFI P    +  DD+F+H S +   G + L +G  VTY +     
Sbjct: 43  MKRGIVKNFCRQKGHGFIKPH---DGSDDIFVHISDI--DGEYVLKDGDEVTYKECPIPP 97

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 98  KNLKVQAIEVTI 109


>gi|49475595|ref|YP_033636.1| cold shock protein [Bartonella henselae str. Houston-1]
 gi|49238402|emb|CAF27629.1| Cold shock protein [Bartonella henselae str. Houston-1]
          Length = 191

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH + +   G   + EG  V     + +  
Sbjct: 28 GVIKWFDGSKGYGFIVPDLPNC--PDILLHVTVMRRDGFQTVLEGAKVVCAVEKTERG 83



 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N DKG+GF++     +  +D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 117 LERAIVKWFNRDKGFGFLSR---GQGTEDIFVHMETLRRFGLAELRSGQVVLVRFGKGE- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMTAE 179


>gi|88855706|ref|ZP_01130369.1| cold shock protein [marine actinobacterium PHSC20C1]
 gi|88815030|gb|EAR24889.1| cold shock protein [marine actinobacterium PHSC20C1]
          Length = 127

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K+Y+ +KG+GFI     ++ G +VFLH SA+  AG   +  G  + +      A
Sbjct: 1  MPTGKVKFYDDEKGFGFI----MSDEGQEVFLHASAL-PAGTTGVKAGTRLEFGI----A 51

Query: 62 NGKYSAENLKL 72
          +GK  A+ L +
Sbjct: 52 DGKKGAQALSV 62


>gi|322510909|gb|ADX06222.1| cold-shock DNA-binding domain-containing protein [Organic Lake
          phycodnavirus 2]
          Length = 88

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KG+GF+  E  +E     F H S ++  G   L  G+ V+   V  D N K  
Sbjct: 4  VKWFNKRKGFGFVVDETGSE----YFCHHSDISITGYKYLRAGEYVSGTVVNMDGNKKKL 59

Query: 67 AENLKLVP 74
          +  L  VP
Sbjct: 60 SNILPPVP 67


>gi|311899759|dbj|BAJ32167.1| putative cold shock protein [Kitasatospora setae KM-6054]
          Length = 71

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV--ASAGLFNLTEGQLVTYDYVQN 59
          +  G++KW++    YG+ITP+G    G DV ++  +V   +     L +GQ V YD  + 
Sbjct: 1  METGTVKWFDVHHAYGYITPDG---GGPDVAVYYDSVLADTDEHRFLHQGQRVRYD--ET 55

Query: 60 DANGKYSAENLKLV 73
              +  AE ++ V
Sbjct: 56 VQESRPVAERVRPV 69


>gi|215432621|ref|ZP_03430540.1| cold shock protein A cspA [Mycobacterium tuberculosis EAS054]
          Length = 61

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          FI PE   +   DVF+H + +   G   L E Q V ++   +   G  +
Sbjct: 11 FIAPE---DGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHS-PKGPQA 55


>gi|147902682|ref|NP_001088341.1| cold shock domain containing C2, RNA binding [Xenopus laevis]
 gi|54038112|gb|AAH84399.1| LOC495181 protein [Xenopus laevis]
          Length = 152

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           + +G  K ++  KG+GFITPE   + G D+FLH S +     +   EG  VTY       
Sbjct: 67  LSKGVCKCFSRSKGHGFITPE---DGGPDIFLHISDIEGE--YVPMEGDEVTYKVCTIPP 121

Query: 61  ANGKYSAENLKL 72
            N K+ A  +K+
Sbjct: 122 KNEKHQAVEVKI 133


>gi|313674903|ref|YP_004052899.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM
          4126]
 gi|312941601|gb|ADR20791.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM
          4126]
          Length = 63

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G++K++N  KG+GFI  E +     D F+H S +    + ++ E   V Y+  Q+  
Sbjct: 1  MNKGTVKFFNDSKGFGFIIDESTQ---QDYFVHVSGL----IDDIRENDEVVYEL-QDGK 52

Query: 62 NGKYSAENLKL 72
           G  +A N+KL
Sbjct: 53 KG-LNAVNVKL 62


>gi|227364737|ref|ZP_03848786.1| major cold shock protein [Lactobacillus reuteri MM2-3]
 gi|227070196|gb|EEI08570.1| major cold shock protein [Lactobacillus reuteri MM2-3]
          Length = 72

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +K ++  KG+GFIT     E    +F+H S +       L   + V+   VQ   
Sbjct: 6  MLKGKVKSFDEQKGWGFITVPHEGE----IFVHYSGIEGTRRRILHPDEEVSLVIVQGQ- 60

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 61 KGPQAAHV 68


>gi|295096004|emb|CBK85094.1| Cold shock proteins [Enterobacter cloacae subsp. cloacae NCTC
          9394]
          Length = 46

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
          G +KW+  DKG+GFI+P    +   DVF+H SA+       
Sbjct: 7  GLVKWFKEDKGFGFISP---VDGSKDVFVHFSALQGENFKT 44


>gi|254511315|ref|ZP_05123382.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535026|gb|EEE38014.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 168

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +    +KW++  KG+GF    GS+E   DVFLH   +  +GL +L  G+ +    + +  
Sbjct: 96  LEAARVKWFDKGKGFGFANVFGSSE---DVFLHIEVLRRSGLADLQPGEALAMRVI-DGK 151

Query: 62  NGKYSAENL 70
            G+ +A+ L
Sbjct: 152 RGRMAAQVL 160



 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG +KW++P KGYGF+  +   + G D+ LH + + + G  ++ +G  +          G
Sbjct: 5  RGHVKWFDPAKGYGFVVSD---DGGPDILLHVNVLRNFGQSSVADGAGIEI-MTHKTDRG 60

Query: 64 KYSAENLKLVPK 75
            + E + + P 
Sbjct: 61 VQAVEVISVDPP 72


>gi|55378475|ref|YP_136325.1| cold shock protein [Haloarcula marismortui ATCC 43049]
 gi|55231200|gb|AAV46619.1| cold shock protein [Haloarcula marismortui ATCC 43049]
          Length = 64

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ ++N   GYGFI  + + E   DVF H   V   G  +L EGQ V +D  Q D 
Sbjct: 1  MATGTVDFFNDTGGYGFIETDDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54

Query: 62 NGKYSAENLKLV 73
            +  A+NL+ +
Sbjct: 55 GPR--AKNLERL 64


>gi|84503413|ref|ZP_01001473.1| cold shock DNA-binding domain protein [Oceanicola batsensis
           HTCC2597]
 gi|84388200|gb|EAQ01152.1| cold shock DNA-binding domain protein [Oceanicola batsensis
           HTCC2597]
          Length = 179

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW+N DKG+GF    G T+   DVF+H   + ++GL +L  G+ V    + +   GK 
Sbjct: 107 RVKWFNKDKGFGFANVFGGTD---DVFIHVEVLRASGLADLQPGEAVALRVI-DGRRGKM 162

Query: 66  SAEN 69
           ++E 
Sbjct: 163 ASEV 166



 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G++KW++P +G+GF+  E   + G D+ LH + + + G  ++ +G  ++    Q    G
Sbjct: 13 GTVKWFDPGRGFGFVVSE---DGGPDILLHANVLRNFGQSSVADGAKISI-LAQTTQRG 67


>gi|262203035|ref|YP_003274243.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
 gi|262086382|gb|ACY22350.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM
          43247]
          Length = 164

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +  Y+ ++G+GF+ PE     G DVFLH + +      +L  G  V++D  + D   K
Sbjct: 9  GKVVHYDTNRGFGFLAPES---GGADVFLHINDIDID-ESSLKPGAKVSFDVEETDRGAK 64

Query: 65 YSAENLKLVPKS 76
            A N+ +  ++
Sbjct: 65 --AVNVAVTEEA 74


>gi|301620236|ref|XP_002939487.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2
           [Xenopus (Silurana) tropicalis]
 gi|301620238|ref|XP_002939488.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3
           [Xenopus (Silurana) tropicalis]
 gi|301620240|ref|XP_002939489.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 4
           [Xenopus (Silurana) tropicalis]
 gi|301620242|ref|XP_002939490.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 5
           [Xenopus (Silurana) tropicalis]
          Length = 153

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQND 60
           V++G  K ++  KG+GFITP    + G D+FLH S +     +   EG  VTY       
Sbjct: 68  VYKGVCKCFSRSKGHGFITP---VDGGPDIFLHISDIEGE--YVPAEGDEVTYKVCTVPP 122

Query: 61  ANGKYSAENLKL 72
            N K+ A  +K+
Sbjct: 123 KNEKHQAVEVKI 134


>gi|301620234|ref|XP_002939486.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 214

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQND 60
           V++G  K ++  KG+GFITP    + G D+FLH S +     +   EG  VTY       
Sbjct: 129 VYKGVCKCFSRSKGHGFITP---VDGGPDIFLHISDIEGE--YVPAEGDEVTYKVCTVPP 183

Query: 61  ANGKYSAENLKL 72
            N K+ A  +K+
Sbjct: 184 KNEKHQAVEVKI 195


>gi|227486664|ref|ZP_03916980.1| cold shock protein CspA [Anaerococcus lactolyticus ATCC 51172]
 gi|227235376|gb|EEI85391.1| cold shock protein CspA [Anaerococcus lactolyticus ATCC 51172]
          Length = 66

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60
          +  G +K+++  KG+GFI        G+D+F+H S + S      L  G  V ++ ++  
Sbjct: 1  MSIGVVKFFDNKKGFGFI-----KWGGEDLFVHFSDIVSEEEFKKLETGDNVEFEKIEAP 55

Query: 61 ANGKYSAENLKLV 73
                A+ +K +
Sbjct: 56 RG--PQAKKVKKI 66


>gi|110638737|ref|YP_678946.1| cold-shock DNA-binding protein family protein [Cytophaga
          hutchinsonii ATCC 33406]
 gi|110281418|gb|ABG59604.1| cold-shock DNA-binding protein family [Cytophaga hutchinsonii
          ATCC 33406]
          Length = 63

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K++N  KG+GFI      ESG + F+H S +       + E   VT++  +   
Sbjct: 1  MNNGTVKFFNNSKGFGFII---EKESGKEYFVHVSGLVDE----IRENDEVTFELEKGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N+KLV
Sbjct: 54 G--LNAVNVKLV 63


>gi|73540243|ref|YP_294763.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha
          JMP134]
 gi|72117656|gb|AAZ59919.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134]
          Length = 195

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K +N DKG+GFI P   +  G D+F+H S     G      G+ +T+  V  + +GK
Sbjct: 14 GTLKSWNKDKGFGFIAP---SNGGRDIFVHISDYPRQG-GMPKIGESLTF-LVTLNQDGK 68

Query: 65 YSAENLK 71
            A N++
Sbjct: 69 NKAINVQ 75


>gi|134098539|ref|YP_001104200.1| putative DNA binding protein [Saccharopolyspora erythraea NRRL
          2338]
 gi|291003245|ref|ZP_06561218.1| putative DNA binding protein [Saccharopolyspora erythraea NRRL
          2338]
 gi|133911162|emb|CAM01275.1| putative DNA binding protein [Saccharopolyspora erythraea NRRL
          2338]
          Length = 135

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQND 60
          +  G +  ++  +GYGF+ P+   + G+DVF+H + + +    +L   G  V ++    +
Sbjct: 1  MQTGRVVRFDEVRGYGFVAPD---QGGEDVFVHANDIRAD--KHLFRPGLRVAFEVEDGE 55

Query: 61 ANGKYSAENLKLVPK 75
                A ++ +V +
Sbjct: 56 RG--LKASDVHIVEQ 68


>gi|148543833|ref|YP_001271203.1| cold-shock DNA-binding protein family protein [Lactobacillus
          reuteri DSM 20016]
 gi|184153234|ref|YP_001841575.1| cold shock protein [Lactobacillus reuteri JCM 1112]
 gi|194468389|ref|ZP_03074375.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri
          100-23]
 gi|300909914|ref|ZP_07127374.1| major cold shock protein [Lactobacillus reuteri SD2112]
 gi|325682636|ref|ZP_08162153.1| major cold shock protein [Lactobacillus reuteri MM4-1A]
 gi|62422038|gb|AAX82601.1| putative cold shock protein [Lactobacillus reuteri]
 gi|148530867|gb|ABQ82866.1| cold-shock DNA-binding protein family [Lactobacillus reuteri DSM
          20016]
 gi|183224578|dbj|BAG25095.1| cold shock protein [Lactobacillus reuteri JCM 1112]
 gi|194453242|gb|EDX42140.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri
          100-23]
 gi|300892562|gb|EFK85922.1| major cold shock protein [Lactobacillus reuteri SD2112]
 gi|324978475|gb|EGC15425.1| major cold shock protein [Lactobacillus reuteri MM4-1A]
          Length = 67

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +K ++  KG+GFIT     E    +F+H S +       L   + V+   VQ   
Sbjct: 1  MLKGKVKSFDEQKGWGFITVPHEGE----IFVHYSGIEGTRRRILHPDEEVSLVIVQGQ- 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 KGPQAAHV 63


>gi|225023129|ref|ZP_03712321.1| hypothetical protein CORMATOL_03178 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305681903|ref|ZP_07404707.1| cold-shock DNA-binding domain protein [Corynebacterium
          matruchotii ATCC 14266]
 gi|224944352|gb|EEG25561.1| hypothetical protein CORMATOL_03178 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305658376|gb|EFM47879.1| cold-shock DNA-binding domain protein [Corynebacterium
          matruchotii ATCC 14266]
          Length = 132

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+PD+G+GFI    S   G+D ++ +S V   G+  L  GQ V +D+  + A
Sbjct: 1  MPIGKVKWYDPDRGFGFI----SNPDGEDCYVGKS-VLPHGVTELHRGQRVDFDFA-SGA 54

Query: 62 NGKYSAENLKLVPK 75
           G   A  +K++ +
Sbjct: 55 RGPQ-ALRVKILDE 67


>gi|84687162|ref|ZP_01015043.1| cold shock DNA-binding domain protein [Maritimibacter
          alkaliphilus HTCC2654]
 gi|84664750|gb|EAQ11233.1| cold shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2654]
          Length = 185

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V RG++KW++P KG+GF+  +   + G D+ LH + + + G  ++ +   +    VQ+  
Sbjct: 20 VQRGTVKWFDPAKGFGFVVAD---QGGPDILLHANVLRNFGQSSVADRAGIEI-VVQDTP 75

Query: 62 NGKYSAENLKLVPKSSN 78
           G  + E L +    S 
Sbjct: 76 RGMQAVEVLAIHAAESE 92



 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  E   DVF+H   +  +GL +L  G+ +       +  G+ 
Sbjct: 115 RVKWFDKGKGFGFANAFGKPE---DVFIHVEVLRRSGLADLQPGEAIGMRAAMGE-RGRM 170

Query: 66  S 66
           +
Sbjct: 171 A 171


>gi|114765321|ref|ZP_01444438.1| cold shock DNA-binding domain protein [Pelagibaca bermudensis
          HTCC2601]
 gi|114542301|gb|EAU45330.1| cold shock DNA-binding domain protein [Roseovarius sp. HTCC2601]
          Length = 180

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GF+  +   E G D+ LH + + + G  ++ +G  +     Q    G 
Sbjct: 17 GKVKWFDPVKGFGFVIAD---EGGPDILLHANVLRNFGQSSVADGARIEVS-AQRTERGI 72

Query: 65 YSAENLKLVPKSS 77
           + E  ++ P  +
Sbjct: 73 QATEVRRIEPPEA 85



 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G ++   DVF+H   +  +GL +L  G+ +    + N   G+ 
Sbjct: 111 RVKWFDKAKGFGFANVFGRSD---DVFIHIEVLRRSGLADLQPGEALAIRVI-NGKRGQM 166

Query: 66  SAEN 69
           + E 
Sbjct: 167 ATEV 170


>gi|256833261|ref|YP_003161988.1| cold-shock DNA-binding domain-containing protein [Jonesia
          denitrificans DSM 20603]
 gi|256686792|gb|ACV09685.1| cold-shock DNA-binding domain protein [Jonesia denitrificans DSM
          20603]
          Length = 127

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K+++ ++G+GFIT +     G  VFLH +A+ +        G  V Y    +  
Sbjct: 1  MPTGKVKFFDAERGFGFITGD----DGHQVFLHTTALPTDA-PAPKPGARVEYGVA-DGR 54

Query: 62 NGKYSAENLKLVPKSS 77
           G  +     L P  S
Sbjct: 55 KGPQALSVRYLDPPPS 70


>gi|38637833|ref|NP_942807.1| hypothetical protein PHG169 [Ralstonia eutropha H16]
 gi|32527171|gb|AAP85921.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 191

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 7/78 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +K ++ DKG+GFI          DVF H +A+ +  +   T G  V+++  +  
Sbjct: 1  MKKAGQVKTWHADKGFGFI---DVYADMKDVFFHVTALQTRAV-TPTPGDRVSFELGKG- 55

Query: 61 ANGKYSAENLKLV--PKS 76
           +G+  A N+ +V  PKS
Sbjct: 56 KDGRIQALNVAIVGAPKS 73


>gi|124008225|ref|ZP_01692922.1| conserved domain protein [Microscilla marina ATCC 23134]
 gi|123986324|gb|EAY26146.1| conserved domain protein [Microscilla marina ATCC 23134]
          Length = 64

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K++N  KG+GFIT +GS     + F H S +       + EG  V ++  +   
Sbjct: 1  MNTGTVKFFNESKGFGFITEDGSN---KEYFTHVSGLVDD----IREGDEVEFELQEGRK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K +
Sbjct: 54 G--LNAVNVKRI 63


>gi|295394518|ref|ZP_06804741.1| cold-shock domain family protein [Brevibacterium mcbrellneri ATCC
          49030]
 gi|294972697|gb|EFG48549.1| cold-shock domain family protein [Brevibacterium mcbrellneri ATCC
          49030]
          Length = 120

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 8/64 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ +KG+GF+T +       D+FLH++A+   G+  +  G  + +D V +  
Sbjct: 1  MPVGRVKWFDQEKGFGFVTSDEG-----DMFLHQTAL-PDGVK-VAPGTRLEFDVV-DGR 52

Query: 62 NGKY 65
           GK 
Sbjct: 53 RGKQ 56


>gi|323456576|gb|EGB12443.1| hypothetical protein AURANDRAFT_61070 [Aureococcus anophagefferens]
          Length = 789

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 6/74 (8%)

Query: 5   GSIKWYNPD-KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++ + K YGF+ P    + G D+F+H   V       L  G  V + Y     +G
Sbjct: 596 GRVKWFDVERKQYGFLAP---ADHGPDLFVHAGDVVGCARR-LAPGDAVEFAYGIQAQSG 651

Query: 64  KYSA-ENLKLVPKS 76
           +  A + ++LVP +
Sbjct: 652 RPKALDVVRLVPAA 665



 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTES--GDD-----VFLHRSAVASAGLFN--LTEGQLVTYD 55
           G + W++  K YG I P+       G D     VF+H + V + G     L     V + 
Sbjct: 451 GRVLWFDARKNYGAIQPDRPLPGCDGGDGGAPYVFVHGNDVEAGGGPGAALRTNDAVEF- 509

Query: 56  YVQNDANGKYSAENLKLVPKS 76
                  G+  A ++ +V  +
Sbjct: 510 CRGTCPRGRAKAAHVTVVATA 530



 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 17/81 (20%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLT------EGQLVTY 54
           G +  ++    +GFI P+         G++ FLH       GL  L        GQ V +
Sbjct: 695 GVVVRFDAQHRWGFIRPDDPACQPEAGGENFFLH-------GLDVLDGGGPVVAGQAVEF 747

Query: 55  DYVQNDANGKYSAENLKLVPK 75
             V++ A    +   ++L P 
Sbjct: 748 AVVRSAARRCKAVHCVRLEPP 768


>gi|300932619|ref|ZP_07147875.1| cold shock protein [Corynebacterium resistens DSM 45100]
          Length = 127

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ D+GYGF+    S    +DV++  S V   G+  L +GQ + Y++V    
Sbjct: 1  MPTGRVKWYDADRGYGFV----SNPGDEDVYVG-SQVLPDGVDELVKGQRMEYEFVAGRR 55

Query: 62 NGK 64
            +
Sbjct: 56 GPQ 58


>gi|227832587|ref|YP_002834294.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
 gi|262182930|ref|ZP_06042351.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
 gi|227453603|gb|ACP32356.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975]
          Length = 126

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ DKG+GF+    S    +DV++ R+ V   G+  L +GQ + +D+     
Sbjct: 1  MPIGKVKWYDADKGFGFV----SNPGDEDVYVGRN-VLPKGVDELHQGQRIEFDFAAGRR 55

Query: 62 NGKYSAENLKLV 73
               A  +K++
Sbjct: 56 G--PQALRVKVL 65


>gi|76803160|ref|YP_331255.1| cold shock protein [Natronomonas pharaonis DSM 2160]
 gi|76559025|emb|CAI50623.1| probable cold shock protein [Natronomonas pharaonis DSM 2160]
          Length = 64

 Score = 61.5 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ ++N   GYGFI  E + E   DVF H   V   G  +L EGQ V +D  + D 
Sbjct: 1  MATGTVDFFNDTGGYGFIETEDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEEADK 54

Query: 62 NGKYSAENLKLV 73
            +  A NL  +
Sbjct: 55 GPR--ATNLTRL 64


>gi|297572154|ref|YP_003697928.1| cold-shock DNA-binding domain protein [Arcanobacterium
          haemolyticum DSM 20595]
 gi|296932501|gb|ADH93309.1| cold-shock DNA-binding domain protein [Arcanobacterium
          haemolyticum DSM 20595]
          Length = 143

 Score = 61.5 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +K+++  KG+GFI  +     G  V++ +SAV   G+  L  G  V Y     D 
Sbjct: 20 VPTGKVKFFDEQKGFGFIAGD----DGAQVYVAQSAV-PLGVK-LRPGTRVEYGV--GDT 71

Query: 62 NGKYSAENLKLVPKSSN 78
              +A ++ ++ K ++
Sbjct: 72 RRGPAALSVSVIKKETS 88


>gi|55379017|ref|YP_136867.1| cold shock protein [Haloarcula marismortui ATCC 43049]
 gi|55231742|gb|AAV47161.1| cold shock protein [Haloarcula marismortui ATCC 43049]
          Length = 64

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ ++N   GYGFI  + + E   DVF H   V   G  +L EGQ V +D  Q D 
Sbjct: 1  MAEGTVDFFNDTGGYGFIETDDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54

Query: 62 NGKYSAENLKLV 73
            +  A NL  +
Sbjct: 55 GPR--ATNLTRL 64


>gi|332293443|ref|YP_004432052.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332171529|gb|AEE20784.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 64

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H+G++K++N  KG+GFI  E + +     F+H + +    +  + EG  V ++  +   
Sbjct: 1  MHKGTVKFFNDTKGFGFINEEEANQEH---FVHVTGL----IDEVREGDAVEFELKEGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N++++
Sbjct: 54 G--LNAVNVRVI 63


>gi|317491464|ref|ZP_07949900.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921011|gb|EFV42334.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 69

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+  +G+G I+P    + G+D++++RS +A++    LTEGQ V +       
Sbjct: 3  LKMGLVKWYSQSEGFGIISP---LDGGNDIYVNRSGIANSRKKLLTEGQRVEFSTYLGSR 59

Query: 62 NGKYSAENL 70
              +AE++
Sbjct: 60 G--LTAEDV 66


>gi|312891332|ref|ZP_07750850.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
          DSM 18603]
 gi|311296193|gb|EFQ73344.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis
          DSM 18603]
          Length = 63

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GFI P   +    ++F+H S +    +  + E   V Y+  +   
Sbjct: 1  MQSGTVKFFNETKGFGFIVP---SNGDSEIFVHSSGL----IDQIRENDSVNYEVERGKK 53

Query: 62 NGKYSAENLKLV 73
             ++A N+K+V
Sbjct: 54 G--FNAVNVKVV 63


>gi|257386713|ref|YP_003176486.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
 gi|257169020|gb|ACV46779.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
          Length = 69

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ ++N   GYGFI  E + +   DVF H   V   G  +L EGQ + +D  Q D 
Sbjct: 6  MATGTVDFFNDTGGYGFIETEDADD---DVFFHMEDV---GGPDLEEGQEIEFDIEQADK 59

Query: 62 NGKYSAENLKLV 73
            +  A N+  +
Sbjct: 60 GPR--ATNVTRL 69


>gi|153872773|ref|ZP_02001567.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
 gi|152070763|gb|EDN68435.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
          Length = 189

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +  ++  +G+GFI  +  +E   DVF+H   +      +L+ GQ V +D  Q D   
Sbjct: 2  EGIVVKFDKKRGFGFIRSDKFSE---DVFVHLKNIREQ--QSLSPGQKVEFDTEQTDKG- 55

Query: 64 KYSAENL 70
            SA N+
Sbjct: 56 -LSAINV 61


>gi|261314020|ref|ZP_05953217.1| cold-shock family protein [Brucella pinnipedialis M163/99/10]
 gi|261303046|gb|EEY06543.1| cold-shock family protein [Brucella pinnipedialis M163/99/10]
          Length = 150

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV--TYDYVQNDANGK 64
           +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +        G 
Sbjct: 81  VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFG---TGEKGL 134

Query: 65  YSAE 68
            +AE
Sbjct: 135 MAAE 138


>gi|253575315|ref|ZP_04852653.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845312|gb|EES73322.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 109

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 7/68 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G ++ Y  D+G+GFI      E G DV  H +AV  A    L  G  VT++  + D  GK
Sbjct: 47  GYVRRYYDDRGFGFI----GREDGSDVHFHINAVQGA--DKLRTGDRVTFEIGE-DKRGK 99

Query: 65  YSAENLKL 72
            +A+N++L
Sbjct: 100 PTAKNVRL 107


>gi|295134497|ref|YP_003585173.1| cold shock protein [Zunongwangia profunda SM-A87]
 gi|294982512|gb|ADF52977.1| cold shock protein [Zunongwangia profunda SM-A87]
          Length = 63

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K++N  KG+GFIT EG      D F+H + +    +  + EG  V +D  +   
Sbjct: 1  MSKGTVKFFNDSKGFGFITEEGVD---KDHFVHVTGL----IDEIREGDEVKFDLQEGKR 53

Query: 62 NGKYSAENLKLV 73
              +A N++++
Sbjct: 54 G--LNAVNVEVI 63


>gi|269139514|ref|YP_003296215.1| cold shock-like protein [Edwardsiella tarda EIB202]
 gi|267985175|gb|ACY85004.1| cold shock-like protein [Edwardsiella tarda EIB202]
 gi|304559403|gb|ADM42067.1| Cold shock protein CspI [Edwardsiella tarda FL6-60]
          Length = 69

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+P  G G I+P    + GDD++++R+ +ASA    L EGQ V +   +   
Sbjct: 3  LKMGFVKWYDPSAGLGVISP---LDGGDDLYVNRTGIASARNKLLREGQRVEFSTPRGRR 59

Query: 62 NGKYSAENL 70
          +    AE++
Sbjct: 60 S--QMAEDV 66


>gi|172041246|ref|YP_001800960.1| putative cold shock protein [Corynebacterium urealyticum DSM
          7109]
 gi|171852550|emb|CAQ05526.1| putative cold shock protein [Corynebacterium urealyticum DSM
          7109]
          Length = 127

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++W++ DKG+GF+    S    +DV++    V   G+  L  GQ V Y++V    
Sbjct: 1  MPVGKVRWFDADKGFGFV----SNPGEEDVYVG-RQVLPEGVTELVPGQRVEYEFV-AAR 54

Query: 62 NGKYS 66
           G  +
Sbjct: 55 RGPQA 59


>gi|260770106|ref|ZP_05879039.1| integral membrane protein [Vibrio furnissii CIP 102972]
 gi|260615444|gb|EEX40630.1| integral membrane protein [Vibrio furnissii CIP 102972]
 gi|315182622|gb|ADT89535.1| hypothetical protein vfu_B01354 [Vibrio furnissii NCTC 11218]
          Length = 195

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 4  RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          +G I  ++ DKGYGFIT P+G ++    +F+H SAV       L +   V++D  Q D  
Sbjct: 2  KGKITRWHDDKGYGFITAPDGKSK----IFVHISAVKHRA-KRLAKNDTVSFDVEQ-DRK 55

Query: 63 GKYSAENLKL 72
          G+ +A N++L
Sbjct: 56 GRLNAVNVEL 65


>gi|240850648|ref|YP_002972048.1| cold shock protein [Bartonella grahamii as4aup]
 gi|240267771|gb|ACS51359.1| cold shock protein [Bartonella grahamii as4aup]
          Length = 191

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH + +   G     EG  V     + +  
Sbjct: 28 GVIKWFDGSKGYGFIVPDLPHF--PDILLHVTVMRRDGFQTALEGAKVICAVEKTERG 83



 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N DKGYGF++     +  +D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 117 LERAIVKWFNRDKGYGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMTAE 179


>gi|25027451|ref|NP_737505.1| putative cold shock protein [Corynebacterium efficiens YS-314]
 gi|23492733|dbj|BAC17705.1| putative cold shock protein [Corynebacterium efficiens YS-314]
          Length = 127

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KWY+P++G+GF+    S   G+D F+    V   G+  L +GQ + +D+     
Sbjct: 1  MPVGTVKWYDPERGFGFV----SNPGGEDCFVG-KQVLPKGVTELHQGQRIEFDFAAGRK 55

Query: 62 NGKYSAENLKLVP 74
               A  +K++ 
Sbjct: 56 G--PQALRVKVLE 66


>gi|284041216|ref|YP_003391146.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
 gi|283820509|gb|ADB42347.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
          Length = 68

 Score = 61.1 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KGYGFI  +   ++  D+F+H + +       + E   V ++ V +  
Sbjct: 1  MQTGVVKFFNESKGYGFIVED---DTNRDIFVHITGLNGI---TIREKDRVQFEVV-DGK 53

Query: 62 NGKYSAENLKL 72
           G  + +  K+
Sbjct: 54 KGLNAVKVKKI 64


>gi|254461278|ref|ZP_05074694.1| cold shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2083]
 gi|206677867|gb|EDZ42354.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium
          HTCC2083]
          Length = 173

 Score = 61.1 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG++KW++P KG+GF+  E   E G D+ LH + + + G  ++ EG ++     Q    G
Sbjct: 11 RGAVKWFDPAKGFGFVVAE---EGGADILLHANVLRNFGQNSVAEGAVIEI-LSQETDRG 66

Query: 64 KYSAENLKLVP 74
            + E L + P
Sbjct: 67 LQAVEVLSIDP 77



 Score = 54.6 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    GS     D+F+H   +  +GL +L  G+ +    + +   G  
Sbjct: 106 RVKWFDKGKGFGFANVFGSD---ADIFVHVEVLRRSGLADLAPGEALALRVI-DGKRGLM 161

Query: 66  SAEN 69
           + E 
Sbjct: 162 AIEV 165


>gi|222479737|ref|YP_002565974.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
          ATCC 49239]
 gi|222452639|gb|ACM56904.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
          ATCC 49239]
          Length = 64

 Score = 61.1 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G + ++N   GYGFI  + + +   DVF H   V   G  +L EGQ V ++  ++D 
Sbjct: 1  MATGKVDFFNDTGGYGFIETDDADD---DVFFHMEDV---GGPDLEEGQEVEFEIEESDK 54

Query: 62 NGKYSAENLKLV 73
            +  A NL  +
Sbjct: 55 GPR--ATNLTRL 64


>gi|261330889|emb|CBH13874.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 504

 Score = 61.1 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 43/119 (36%)

Query: 1   MVHR------GSIKWYNPDKGYGF---------ITPEGSTESGD---------------- 29
           M+++      G +K YNP +G+GF         I P+    +G                 
Sbjct: 209 MMYQLGEWYEGVVKRYNPMRGFGFLTATHHLQVIPPDVDNRAGSVSDADGQNSQQTASPP 268

Query: 30  ------------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
                       DVF+H+S +   G   L+ G  V +   +        A +++L+  +
Sbjct: 269 QATLLRTPVTVGDVFVHQSYIRMQGFRALSTGDRVAFRVGKLPGKDANQAVSVQLLSTA 327


>gi|72393617|ref|XP_847609.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62176758|gb|AAX70857.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70803639|gb|AAZ13543.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 504

 Score = 61.1 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 43/119 (36%)

Query: 1   MVHR------GSIKWYNPDKGYGF---------ITPEGSTESGD---------------- 29
           M+++      G +K YNP +G+GF         I P+    +G                 
Sbjct: 209 MMYQLGEWYEGVVKRYNPMRGFGFLTATHHLQVIPPDVDNRAGSVSDADGQNSQQTASPP 268

Query: 30  ------------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
                       DVF+H+S +   G   L+ G  V +   +        A +++L+  +
Sbjct: 269 QATLLRTPVTVGDVFVHQSYIRMQGFRALSTGDRVAFRVGKLPGKDANQAVSVQLLSTA 327


>gi|71755901|ref|XP_828865.1| mitochondrial RNA-binding protein [Trypanosoma brucei TREU927]
 gi|4757566|gb|AAD29082.1| RNA binding protein precursor [Trypanosoma brucei]
 gi|70834251|gb|EAN79753.1| mitochondrial RNA binding protein [Trypanosoma brucei]
 gi|261334788|emb|CBH17782.1| RBP16 [Trypanosoma brucei gambiense DAL972]
          Length = 141

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQN 59
          +++G +  +   +G+GFI  +   +     F+H SA+ +   G   LT GQ V ++    
Sbjct: 17 LNKGKVISWMSGRGFGFIEDDADKKQH---FVHFSALQTETGGFRALTVGQEVEFEVA-- 71

Query: 60 DANGKYSAENLK 71
            +G+  AEN+ 
Sbjct: 72 SQDGRTRAENVT 83


>gi|322368358|ref|ZP_08042927.1| cold shock protein [Haladaptatus paucihalophilus DX253]
 gi|320552374|gb|EFW94019.1| cold shock protein [Haladaptatus paucihalophilus DX253]
          Length = 64

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI  E S E   DVF H   V   G  +L EGQ V +D  Q D 
Sbjct: 1  MAKGTVDFFNDTGGYGFIDTEDSDE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54

Query: 62 NGKYSAENLKLV 73
            +  A N++ +
Sbjct: 55 GPR--ATNVQRL 64


>gi|297493195|ref|XP_002700194.1| PREDICTED: cold shock domain protein A short-like [Bos taurus]
 gi|296470653|gb|DAA12768.1| cold shock domain protein A short-like [Bos taurus]
          Length = 261

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG---LF-NLTEGQLVTYDYVQND 60
           GS+  +   KGYGFI+   + E   DVF+H +A+          ++  G+ V +D VQ +
Sbjct: 70  GSVVRFKEKKGYGFISMHNTQE---DVFVHHTAITRKNPCMYRGSVENGETVEFDVVQGE 126

Query: 61  ANGKYS 66
              K +
Sbjct: 127 QGTKAA 132


>gi|126731269|ref|ZP_01747076.1| cold shock DNA-binding domain protein [Sagittula stellata E-37]
 gi|126708180|gb|EBA07239.1| cold shock DNA-binding domain protein [Sagittula stellata E-37]
          Length = 175

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GF+  +     G D+ LH + + + G  ++ +G L+   +VQ    G 
Sbjct: 13 GKVKWFDPVKGFGFVVSDA---GGPDILLHANVLRNFGQSSVADGALIEI-FVQRTDRGV 68

Query: 65 YSAENLKLVPKSS 77
           + + L + P  +
Sbjct: 69 QATQVLSIEPPET 81



 Score = 57.3 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  +   DVF+H   +  +GL +L  G+ +    + +   G+ 
Sbjct: 107 RVKWFDKAKGFGFANVFGKPD---DVFIHIEVLRRSGLSDLQPGEALAIRVI-DGRRGRM 162

Query: 66  SAEN 69
           + E 
Sbjct: 163 AMEV 166


>gi|86130475|ref|ZP_01049075.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
 gi|85819150|gb|EAQ40309.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
          Length = 64

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H+G++K++N  KG+GFI  E + +     F+H + +    +  + EG  V ++  +   
Sbjct: 1  MHKGTVKFFNETKGFGFINEEEANQEH---FVHVTGL----IDEVREGDAVEFELKEGKK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|300710595|ref|YP_003736409.1| cold shock protein [Halalkalicoccus jeotgali B3]
 gi|299124278|gb|ADJ14617.1| cold shock protein [Halalkalicoccus jeotgali B3]
          Length = 64

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI  E S E   DVF H   V   G  +L EGQ V +D  Q D 
Sbjct: 1  MAKGTVDFFNDTGGYGFIDSEDSEE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54

Query: 62 NGKYSAENLKLV 73
            +  A NL+ +
Sbjct: 55 GPR--AVNLERL 64


>gi|295696822|ref|YP_003590060.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
 gi|295412424|gb|ADG06916.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912]
          Length = 769

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G IK    +K YGFI P+   E   DV+ H S +   G     EG  V +D  + + 
Sbjct: 1  MAKGRIKKLFSEKQYGFIQPDQGRE---DVYFHVSWIK--GF-TPREGLRVEFDVERGEK 54

Query: 62 NGKYSAENLKLVPK 75
            +  A N+++  K
Sbjct: 55 GPR--ARNVRIAEK 66


>gi|15789425|ref|NP_279249.1| cold shock protein [Halobacterium sp. NRC-1]
 gi|10579749|gb|AAG18729.1| cold shock protein [Halobacterium sp. NRC-1]
          Length = 74

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G + ++N   GYGFI  E + E   DVF H   V   G  +L EGQ V +D  Q D 
Sbjct: 11 MATGEVDFFNDTGGYGFIETEDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 64

Query: 62 NGKYSAENLKLV 73
            +  A NL  +
Sbjct: 65 GPR--ATNLTRL 74


>gi|86138853|ref|ZP_01057425.1| cold shock DNA-binding domain protein [Roseobacter sp. MED193]
 gi|85824500|gb|EAQ44703.1| cold shock DNA-binding domain protein [Roseobacter sp. MED193]
          Length = 180

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KG+GF+  +     G D+ LH + + + G  ++ +G  +          G
Sbjct: 12 QGLVKWFDPTKGFGFVVSDL---GGPDILLHVNVLRNFGQSSVADGTRIEI-VTHRTDRG 67

Query: 64 KYSAENLKLVPKSSN 78
            + E L + P    
Sbjct: 68 VQAVEVLAIHPPERE 82



 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW+N  KG+GF    G +E   DVFLH   +  +GL +L  G+ +    + +   G+ 
Sbjct: 107 RVKWFNKGKGFGFANIFGRSE---DVFLHVEVLRQSGLADLQPGEALAPRVI-DGKRGQM 162

Query: 66  SAEN 69
           +AE 
Sbjct: 163 AAEV 166


>gi|296225904|ref|XP_002758696.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus]
          Length = 207

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW+N   G+GF++   ST    +   DVF+H+S +   G  +L + + V + + ++ 
Sbjct: 42  GICKWFNVRMGFGFLSMTASTGVALDPAVDVFMHQSKLHMEGFRSLKKDEAVEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|116492939|ref|YP_804674.1| cold-shock DNA-binding protein family protein [Pediococcus
          pentosaceus ATCC 25745]
 gi|116103089|gb|ABJ68232.1| cold-shock DNA-binding protein family [Pediococcus pentosaceus
          ATCC 25745]
          Length = 69

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          +  G+++ ++ +KGYGFI     T SGD VF H + + S     L  G+ V
Sbjct: 1  METGTVESFDKEKGYGFIE----TASGDKVFAHYTVIQSEDYKTLEVGEKV 47


>gi|323136356|ref|ZP_08071438.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
 gi|322398430|gb|EFY00950.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC
          49242]
          Length = 191

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKW++  KGYGF+ P+   +   D+ LH + +  +GL    EG  V  +  Q  A G 
Sbjct: 28 GRIKWFDVAKGYGFVVPD---DGSPDILLHVTILRRSGLQTAFEGARVVCE-AQKRAKGM 83

Query: 65 YSAENLKLVPKSS 77
               + +   ++
Sbjct: 84 QVFRVIAMDETTA 96



 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64
           +KW+N  KG+GF+T     E  +D+FLH   V   G+  L  G  V    V+  +   G 
Sbjct: 122 VKWFNRVKGFGFLTR---GEGTEDIFLHMETVRRYGMTELKPGDSV---LVRYGDGPKGL 175

Query: 65  YSAEN 69
            +AE 
Sbjct: 176 MAAEV 180


>gi|254706561|ref|ZP_05168389.1| cold-shock family protein [Brucella pinnipedialis M163/99/10]
          Length = 158

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV--TYDYVQNDANGK 64
           +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +        G 
Sbjct: 89  VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFG---TGEKGL 142

Query: 65  YSAE 68
            +AE
Sbjct: 143 MAAE 146



 Score = 51.1 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           KGYGFI P+       D+ LH +++   G     EG  +  +    D  
Sbjct: 2  AKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 49


>gi|146307203|ref|YP_001187668.1| hypothetical protein Pmen_2176 [Pseudomonas mendocina ymp]
 gi|145575404|gb|ABP84936.1| protein of unknown function DUF1294 [Pseudomonas mendocina ymp]
          Length = 240

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G ++ ++  KG+GFI P    + G +VF H SA+          G  V +     D  G
Sbjct: 7  KGRLRSWDDAKGFGFIQP---QDGGAEVFAHISAMRGD--RRPQPGDEVLF-VAGRDPRG 60

Query: 64 KYSAENLKL 72
          +  AE+L+L
Sbjct: 61 RPRAEHLRL 69


>gi|85716488|ref|ZP_01047459.1| cold shock DNA binding protein [Nitrobacter sp. Nb-311A]
 gi|85696677|gb|EAQ34564.1| cold shock DNA binding protein [Nitrobacter sp. Nb-311A]
          Length = 77

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          +RG++  +N ++G+GF+  +        +F+H S V  A   +L  GQ + ++  +++  
Sbjct: 10 YRGTVVHWNAERGFGFVQRDTDQRE---IFVHISEVDEA-YESLVLGQRIEFEIAESERK 65

Query: 63 -GKYSAENLKLV 73
           G     N+ +V
Sbjct: 66 PGHPKCVNVDVV 77


>gi|257095960|ref|YP_003169601.1| cold-shock DNA-binding domain-containing protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048484|gb|ACV37672.1| cold-shock DNA-binding domain protein [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 203

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQN 59
          M   G++K +N D+G+GFI P   +  G ++F+H  A     G   +  GQ +T++  + 
Sbjct: 1  MRIDGTLKSWNDDRGFGFIEP---SLGGQEIFVHIKAFETRLGRPQI--GQRLTFEI-EM 54

Query: 60 DANGKYSAENLKLV 73
          +A GK  A+ ++ V
Sbjct: 55 NAEGKKRAKRVQPV 68


>gi|326381637|ref|ZP_08203331.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
          NRRL B-59395]
 gi|326199884|gb|EGD57064.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis
          NRRL B-59395]
          Length = 161

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN--LTEGQLVTYDYVQ 58
          M   G +  ++ ++G+GF+ P    E GDDVFLH + V   G+    L  G  V +D   
Sbjct: 1  MAVNGKVVHFDTNRGFGFLAP---AEGGDDVFLHINDV---GIDESLLRPGAEVEFDVES 54

Query: 59 NDANGKYSAENLKLVPKSSN 78
           D   K  A N+K+  ++  
Sbjct: 55 TDRGAK--ALNVKVTKEAPE 72


>gi|163868307|ref|YP_001609516.1| cold shock protein [Bartonella tribocorum CIP 105476]
 gi|161017963|emb|CAK01521.1| cold shock protein [Bartonella tribocorum CIP 105476]
          Length = 191

 Score = 60.7 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH + +   G     EG  V     + +  
Sbjct: 28 GVIKWFDGSKGYGFIVPDLPHF--PDILLHVTVMRRDGFQTAMEGAKVICAVEKTERG 83



 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW+N DKG+GF++     +  +D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 117 LERAIVKWFNRDKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMTAE 179


>gi|227539208|ref|ZP_03969257.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|300770682|ref|ZP_07080561.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|227240890|gb|EEI90905.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|300763158|gb|EFK59975.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 63

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KG+GFI P         +F+H + +    +  + E   V+Y+  Q   
Sbjct: 1  MQEGVVKFFNEAKGFGFIIPNSGEGE---IFVHVTGL----IDKIRENDNVSYEVEQGRK 53

Query: 62 NGKYSAENLKLV 73
              +A N+K++
Sbjct: 54 G--LNAVNVKVI 63


>gi|50955352|ref|YP_062640.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951834|gb|AAT89535.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 126

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 10/71 (14%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K+Y+ +KG+GFI    S++ G +VFLH SA+ +  +  +  G  + +      A
Sbjct: 1  MPTGKVKFYDDEKGFGFI----SSDDGQEVFLHASALLAGAV--VKAGSRLEFGI----A 50

Query: 62 NGKYSAENLKL 72
          +GK  A+ L +
Sbjct: 51 DGKRGAQALSV 61


>gi|55379016|ref|YP_136866.1| cold shock protein [Haloarcula marismortui ATCC 43049]
 gi|55231741|gb|AAV47160.1| cold shock protein [Haloarcula marismortui ATCC 43049]
          Length = 64

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI  E + E   DVF H   +   G  +L EGQ + +D  Q D 
Sbjct: 1  MAKGTVDFFNDTGGYGFIDTEDADE---DVFFHMEDI---GGPDLEEGQELEFDIEQADK 54

Query: 62 NGKYSAENLKLV 73
            +  A N+  +
Sbjct: 55 GPR--ANNVTRL 64


>gi|23502142|ref|NP_698269.1| cold-shock family protein [Brucella suis 1330]
 gi|161619217|ref|YP_001593104.1| cold shock-like protein cspG [Brucella canis ATCC 23365]
 gi|163843529|ref|YP_001627933.1| cold shock-like protein cspG [Brucella suis ATCC 23445]
 gi|254704543|ref|ZP_05166371.1| cold shock-like protein cspG [Brucella suis bv. 3 str. 686]
 gi|260566213|ref|ZP_05836683.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 4 str. 40]
 gi|261755227|ref|ZP_05998936.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 3 str. 686]
 gi|23348105|gb|AAN30184.1| cold-shock family protein [Brucella suis 1330]
 gi|161336028|gb|ABX62333.1| Cold shock-like protein cspG [Brucella canis ATCC 23365]
 gi|163674252|gb|ABY38363.1| Cold shock-like protein cspG [Brucella suis ATCC 23445]
 gi|260155731|gb|EEW90811.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 4 str. 40]
 gi|261744980|gb|EEY32906.1| cold-shock DNA-binding domain-containing protein [Brucella suis
          bv. 3 str. 686]
          Length = 193

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH +++         EG  +  +    D  
Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDEFQTALEGARIVCEVRHGDRG 83



 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KG+GF+T     E  +D+F+H   +   G+  L  GQ+V   +   +  G  +
Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGE-KGLMA 178

Query: 67  AE 68
           AE
Sbjct: 179 AE 180


>gi|47114837|emb|CAE48342.1| unnamed protein product [Methylocystis sp. SC2]
          Length = 183

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKW++  KGYGF+ P+   +  DD+ LH + +  +G+    EG  V  +  Q    G 
Sbjct: 20 GRIKWFDVAKGYGFVVPD---DGSDDILLHVTILRRSGMQTAFEGARVVCE-AQKRVKGM 75

Query: 65 YSAENLKLVPKSS 77
               + +   ++
Sbjct: 76 QVFRVIAMDESTA 88



 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64
           +KW+N  KG+GF+T     E  +D+FLH   V   G+  L  G  V    V+      G 
Sbjct: 114 VKWFNRMKGFGFLTR---GEGTEDIFLHMETVRRYGMTELKPGDSV---LVRYGGGPKGL 167

Query: 65  YSAEN 69
            +AE 
Sbjct: 168 MAAEV 172


>gi|297626985|ref|YP_003688748.1| Cold shock protein [Propionibacterium freudenreichii subsp.
          shermanii CIRM-BIA1]
 gi|296922750|emb|CBL57328.1| Cold shock protein [Propionibacterium freudenreichii subsp.
          shermanii CIRM-BIA1]
          Length = 128

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60
          +  G +++++PDKG+GFIT +          ++  A V   G+ ++  GQ V +  V + 
Sbjct: 1  MPSGRVRFFDPDKGFGFITKDEGDGE-----VYFRANVLPDGVTSVKRGQRVEFGIV-DG 54

Query: 61 ANGKYSAENLKLVPKSS 77
            G+ +     + P  S
Sbjct: 55 RRGEQALSVELIDPPPS 71


>gi|158294527|ref|XP_315660.4| AGAP005641-PA [Anopheles gambiae str. PEST]
 gi|157015604|gb|EAA11357.4| AGAP005641-PA [Anopheles gambiae str. PEST]
          Length = 157

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G +K ++  KG+GFITP      GDD+F+H S +       L  G  V+Y       
Sbjct: 67  IEEGKVKSFSRSKGHGFITP---NAGGDDIFVHISDIEGE-YVPL-PGDEVSYRLCSIPP 121

Query: 62  N-GKYSAENLKL 72
              K  A ++++
Sbjct: 122 KYEKVQAIHVQI 133


>gi|91789211|ref|YP_550163.1| cold-shock DNA-binding protein family protein [Polaromonas sp.
          JS666]
 gi|91698436|gb|ABE45265.1| cold-shock DNA-binding protein family [Polaromonas sp. JS666]
          Length = 193

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++K +N ++G GFI  +   + G ++F+H SA    G      G+ ++++ V+ D
Sbjct: 6  MRFDGTLKKWNAERGLGFIVAD---QGGQEIFVHISAFPRDG-RLPAVGEPLSFE-VEPD 60

Query: 61 ANGKYSAENL 70
           +GK  A  +
Sbjct: 61 RDGKKCAVRI 70


>gi|289607243|emb|CBI60851.1| unnamed protein product [Sordaria macrospora]
          Length = 194

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG IKW++  +G+GF   + S+    DV +H S +   G   L EG +V  +  +  + G
Sbjct: 34 RGVIKWFDVTRGFGFAVADDSSLG--DVLIHFSVLEPHGRRTLPEGAIVLCNAARR-SRG 90

Query: 64 KYSAENLKL 72
            + E L++
Sbjct: 91 MQAVEILEI 99



 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW+N  KGYGF+  +G      DVF+H   +   G+  +   Q +    V+        
Sbjct: 132 VKWFNRLKGYGFLVRDGQA---GDVFVHMETLRRGGIEEVEPDQRLVARIVEGQKGPMAI 188

Query: 67  AE 68
           A 
Sbjct: 189 AV 190


>gi|56477051|ref|YP_158640.1| cold shock family protein [Aromatoleum aromaticum EbN1]
 gi|56313094|emb|CAI07739.1| probable cold shock family protein [Aromatoleum aromaticum EbN1]
          Length = 189

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 1  MVHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G++ KW N D+G+GFI P    + G +VF+H SA    G      G+ ++++   +
Sbjct: 1  MRIEGTLGKW-NDDRGFGFIVP---KDGGPEVFVHVSAFPRDGRR-PQIGEPLSFEIELD 55

Query: 60 DANGKYS 66
              K +
Sbjct: 56 KDRKKRA 62


>gi|237653147|ref|YP_002889461.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
 gi|237624394|gb|ACR01084.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T]
          Length = 204

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 7/78 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQN 59
          M H+G I  +  DKG+GFITP G    G+ VF+H S++A+       EG +LV+Y+    
Sbjct: 1  MRHQGKITTWKDDKGFGFITPNG---GGEPVFVHVSSLANRQRR--PEGTELVSYELA-T 54

Query: 60 DANGKYSAENLKLVPKSS 77
          DA G+  A+ +  V + +
Sbjct: 55 DAKGRLQAKAVAFVGERA 72


>gi|325104808|ref|YP_004274462.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
          12145]
 gi|324973656|gb|ADY52640.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
          12145]
          Length = 63

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K++N  KG+GFI   G+     + F+H S +    +  ++E   VT+D  +   
Sbjct: 1  MNNGTVKFFNATKGFGFIKENGTD---KEYFVHVSGL----IDEISENDQVTFDLKEGRK 53

Query: 62 NGKYSAENLKL 72
              +A N+KL
Sbjct: 54 G--LNAVNVKL 62


>gi|323359215|ref|YP_004225611.1| cold shock proteins [Microbacterium testaceum StLB037]
 gi|323275586|dbj|BAJ75731.1| cold shock proteins [Microbacterium testaceum StLB037]
          Length = 127

 Score = 60.3 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +++Y+ +KG+GFI     T+ G DVFLH +A+  AG      G  + +    +  
Sbjct: 1  MPTGKVRFYDEEKGFGFIA----TDDGQDVFLHATAL-PAGTPAPKAGTRLEFGVA-DGK 54

Query: 62 NGKYSAENLKLVP 74
           G   A +++++ 
Sbjct: 55 RG-LQALSVRVLE 66


>gi|289581794|ref|YP_003480260.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
 gi|289531347|gb|ADD05698.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
          Length = 64

 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI  E + +   DVF H   +   G  +L EGQ + ++  Q   
Sbjct: 1  MAKGTVDFFNDTGGYGFIETEDADD---DVFFHMEDI---GGPDLEEGQELEFEIEQAPK 54

Query: 62 NGKYSAENLKLV 73
            +  A N++ +
Sbjct: 55 GPR--ATNVERL 64


>gi|322493898|emb|CBZ29189.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 529

 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 46/118 (38%)

Query: 2   VHRGSIKWYNPDKGYGFITP--------EGSTESGD------------------------ 29
           ++ G +K YNP++G+GF+T         +GS                             
Sbjct: 334 LYEGFVKRYNPNRGFGFLTATAHVTMVNDGSNSDSAAGTPIASVNATAKAVPTTGEEKNP 393

Query: 30  ----------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY--SAENLKLVPK 75
                     D+F+H+S++   G   L  G  V +       +G+    A N++L+P+
Sbjct: 394 KKHLTPVHLGDIFVHQSSMQMEGFRTLPVGGRVRFRI--GYKDGQQTLQAVNVELLPQ 449


>gi|284163596|ref|YP_003401875.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
 gi|284013251|gb|ADB59202.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
          Length = 64

 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI  E + E   DVF H   +   G  +L EGQ + +D  Q   
Sbjct: 1  MAKGTVDFFNDTGGYGFIETEDADE---DVFFHMEDI---GGPDLEEGQELEFDIEQAPK 54

Query: 62 NGKYSAENLKLV 73
            +  A N++ +
Sbjct: 55 GPR--ATNVERL 64


>gi|294084974|ref|YP_003551734.1| cold shock protein [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664549|gb|ADE39650.1| cold shock protein [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 181

 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +K++N  +GYGF+T E   +   DVF+H   ++  G  +L +GQ +      +    +  
Sbjct: 118 VKFFNDVRGYGFVTAENIDD---DVFVHSRVLSDCGFHSLLQGQKLLVKVDDSGRGPQVQ 174

Query: 67  AENL 70
           A  L
Sbjct: 175 AVRL 178



 Score = 46.9 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          WYN  KGYGF+  + +      +FLHRS +   GL  L  G  V+    +N+  
Sbjct: 38 WYNERKGYGFVKIDDTE-----IFLHRSTLDRFGLIRLLTGDRVSVSLTENEHG 86


>gi|292654672|ref|YP_003534569.1| cold shock protein [Haloferax volcanii DS2]
 gi|291371643|gb|ADE03870.1| cold shock protein [Haloferax volcanii DS2]
          Length = 64

 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G + ++N   GYGFI+ + + +   DVF H   V   G  +L EGQ V +D  Q   
Sbjct: 1  MAKGKVDFFNDTGGYGFISTDDADD---DVFFHMEDV---GGPDLEEGQEVEFDIEQAPK 54

Query: 62 NGKYSAENLKLV 73
            +  A N+  +
Sbjct: 55 GPR--ATNVTRL 64


>gi|329890044|ref|ZP_08268387.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845345|gb|EGF94909.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC
           11568]
          Length = 173

 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +KW+N  KGYGF+  +G      D+F+H   +   GL +L  G  V   + +    
Sbjct: 111 VKWFNRTKGYGFVVRDGQA---GDIFVHVETLRRCGLDDLLPGDPVNVRFAEGPKG 163



 Score = 57.7 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 5  GSIKWYNPDKGYGFITPEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G +KW++  KGYGFI P+        DV LH +++  AG     EG  +  +  +    
Sbjct: 11 GRVKWFDAGKGYGFIVPDQPDLTEERDVLLHVTSLRDAGHEMAGEGAAIVCECAKRAKG 69


>gi|257053654|ref|YP_003131487.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
          12940]
 gi|256692417|gb|ACV12754.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
          12940]
          Length = 64

 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ ++N   GYGFI  E + E   DVF H   V   G  +L EGQ V +D  Q + 
Sbjct: 1  MATGTVDFFNDTGGYGFIETEDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEQAE- 53

Query: 62 NGKYSAENLK 71
           G  +   ++
Sbjct: 54 KGPRATNVVR 63


>gi|91805298|gb|ABE65380.1| CspC [Escherichia coli]
          Length = 41

 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          VF+H SA+   G   L EGQ V ++  Q+   G  +A N+  +
Sbjct: 1  VFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKGP-AAVNVTAI 41


>gi|332667975|ref|YP_004450763.1| cold-shock DNA-binding domain-containing protein
          [Haliscomenobacter hydrossis DSM 1100]
 gi|332336789|gb|AEE53890.1| cold-shock DNA-binding domain protein [Haliscomenobacter
          hydrossis DSM 1100]
          Length = 80

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +H G++K++N  KG+GFI    S E     F+H + +    +  + EG  VT++ V+N  
Sbjct: 18 MHTGTVKFFNESKGFGFIVDNSSNEE---FFVHVTGL----VDKIREGDSVTFN-VENGR 69

Query: 62 NGKYSAENLKL 72
           G  +A  +KL
Sbjct: 70 KG-MNAVEVKL 79


>gi|289580237|ref|YP_003478703.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
 gi|289529790|gb|ADD04141.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
          Length = 64

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI  E + +   DVF H   V   G  +L EGQ + +D  Q D 
Sbjct: 1  MAKGTVDFFNDTGGYGFIETEDADD---DVFFHMEDV---GGPDLEEGQELEFDIEQADK 54

Query: 62 NGKYSAENLKLV 73
            +  A N+  +
Sbjct: 55 GPR--ATNVTRL 64


>gi|163741420|ref|ZP_02148811.1| Cold-shock protein [Phaeobacter gallaeciensis 2.10]
 gi|161385154|gb|EDQ09532.1| Cold-shock protein [Phaeobacter gallaeciensis 2.10]
          Length = 42

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          F+H SA+  AGL  L + Q VT+D  +   +G+ SA NL L
Sbjct: 2  FVHISALERAGLTTLNDDQKVTFDI-EAGRDGRESAANLAL 41


>gi|309812365|ref|ZP_07706120.1| cold-shock DNA-binding domain protein [Dermacoccus sp. Ellin185]
 gi|308433670|gb|EFP57547.1| cold-shock DNA-binding domain protein [Dermacoccus sp. Ellin185]
          Length = 127

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K+Y+ +KG+GF++ +     G DVF+  SA+  AG+  L  G  + Y  V    
Sbjct: 1  MPVGKVKFYSAEKGFGFVSGD----DGVDVFVPASAL-PAGVSQLRGGMRIEYSVVDGRK 55

Query: 62 NGKYSAENLKLV 73
               A +++++
Sbjct: 56 G--AQAMHVQVL 65


>gi|225706812|gb|ACO09252.1| Calcium-regulated heat stable protein 1 [Osmerus mordax]
          Length = 163

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
            G  K ++  +G+GFITP   ++ G+D+F+H S +   G +   EG  V+Y         
Sbjct: 80  TGVCKCFSRSRGHGFITP---SDGGNDIFVHISDI--DGEYVPVEGDEVSYKICSLPPKC 134

Query: 63  GKYSAENLKLV 73
            K  A ++ ++
Sbjct: 135 DKVQAVDVTII 145


>gi|212712034|ref|ZP_03320162.1| hypothetical protein PROVALCAL_03110 [Providencia alcalifaciens
          DSM 30120]
 gi|212685556|gb|EEB45084.1| hypothetical protein PROVALCAL_03110 [Providencia alcalifaciens
          DSM 30120]
          Length = 41

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          F+H SA+ S     L EGQ V++    N A G  +A  + L
Sbjct: 2  FVHFSAIQSDSFKTLNEGQKVSFSVA-NGAKGPAAANVVAL 41


>gi|325921527|ref|ZP_08183380.1| cold shock protein [Xanthomonas gardneri ATCC 19865]
 gi|325547997|gb|EGD18998.1| cold shock protein [Xanthomonas gardneri ATCC 19865]
          Length = 197

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++  +NPD+G+GFITP    + GD+VF+H SA   +       G+L++++  +  
Sbjct: 4  MRTHGTLTRWNPDRGFGFITP---AQPGDEVFVHISAFPRSA-DAPRIGELISFEI-EPS 58

Query: 61 ANGKYSAENL 70
           +G+  A  +
Sbjct: 59 KDGRQQAVRV 68


>gi|289581257|ref|YP_003479723.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
 gi|289530810|gb|ADD05161.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
          Length = 64

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI  E + E   DVF H   V   G  +L EGQ + +D  Q D 
Sbjct: 1  MAKGTVAFFNDTGGYGFIETEDADE---DVFFHMEDV---GGPDLEEGQELEFDIEQADK 54

Query: 62 NGKYSAENLKLV 73
            +  A N++ +
Sbjct: 55 GPR--ATNVERL 64


>gi|93005152|ref|YP_579589.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          cryohalolentis K5]
 gi|92392830|gb|ABE74105.1| cold-shock DNA-binding domain protein [Psychrobacter
          cryohalolentis K5]
          Length = 253

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G IK +N DKGYGFI  +  +E   DVF H  +V  A    +++GQ V ++  +ND 
Sbjct: 3  MQSGKIKHWNSDKGYGFIDVDNQSE---DVFFHIKSVRMA--QPISKGQRVYFNSERNDK 57

Query: 62 NGKYSAEN 69
          N   + E 
Sbjct: 58 NQLRATEV 65


>gi|254294221|ref|YP_003060244.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
 gi|254042752|gb|ACT59547.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
          Length = 166

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G +KW++  KG+GFI P+   + G +  LH S +   G+  + EG L++ D V+ +  
Sbjct: 20 GRVKWFDSVKGFGFIIPDDGLD-GQEALLHISILREFGVEQVVEGMLISCDVVKRERG 76



 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           IKW+N  KGYGF+   G  E   D+FLH   +  AGL     GQ V     +    
Sbjct: 104 IKWFNRTKGYGFVHRVGEVE---DIFLHMVTLRKAGLEEAEPGQKVWVTIGKGPKG 156


>gi|238920339|ref|YP_002933854.1| cold-shock DNA-binding domain, [Edwardsiella ictaluri 93-146]
 gi|238869908|gb|ACR69619.1| cold-shock DNA-binding domain, putative [Edwardsiella ictaluri
          93-146]
          Length = 69

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G +KWY+P  G G I+P    + GDD+++ R+ +ASA    L EGQ V +      
Sbjct: 2  ILKMGFVKWYDPTAGLGVISP---LDGGDDLYVSRTGIASAHNKLLREGQRVEFSTPCGR 58

Query: 61 ANGKYSAENL 70
           +    AE++
Sbjct: 59 RS--QMAEDV 66


>gi|315506605|ref|YP_004085492.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|315413224|gb|ADU11341.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
          Length = 165

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +  ++  +GYGFI P+   +  DDVF+H + +       LT G  V YD V+ + 
Sbjct: 7  MLTGKVVRFDEVRGYGFIAPD---DGSDDVFVHANMLDGDKWA-LTPGVPVEYDAVETER 62

Query: 62 NGKYSAENLKLVPKSSN 78
            K     +  V   ++
Sbjct: 63 GPKAVLVRVSGVAPGAD 79


>gi|302866957|ref|YP_003835594.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
 gi|302569816|gb|ADL46018.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
          27029]
          Length = 165

 Score = 59.6 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +  ++  +GYGFI P+   +  DDVF+H + +       LT G  V YD V+ + 
Sbjct: 7  MLTGKVVRFDEVRGYGFIAPD---DGSDDVFVHANMLDGDKWA-LTPGVPVEYDAVETER 62

Query: 62 NGKYSAENLKLVPKSSN 78
            K     +  V   ++
Sbjct: 63 GPKAVLVRVSGVAPGAD 79


>gi|163742804|ref|ZP_02150189.1| cold shock DNA-binding domain protein [Phaeobacter gallaeciensis
          2.10]
 gi|161384059|gb|EDQ08443.1| cold shock DNA-binding domain protein [Phaeobacter gallaeciensis
          2.10]
          Length = 164

 Score = 59.6 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW++P KG+GF+  +   E G D+ LH + + + G  ++ +G  V          G  +
Sbjct: 1  MKWFDPTKGFGFVVSD---EGGPDILLHVNVLRNFGQSSIADGAEVEL-VTHRTERGVQA 56

Query: 67 AENLKLVPKSSN 78
           E L + P + +
Sbjct: 57 VEVLSITPPARD 68



 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  E   DVFLH   +  +GL  L  G+ +    + +   G+ 
Sbjct: 93  RVKWFDKGKGFGFANVFGRDE---DVFLHVEVLRQSGLSELQPGEALGMRVI-DGKRGRM 148

Query: 66  SAENL 70
           + E L
Sbjct: 149 AVEVL 153


>gi|157121173|ref|XP_001659860.1| hypothetical protein AaeL_AAEL009235 [Aedes aegypti]
 gi|108874689|gb|EAT38914.1| conserved hypothetical protein [Aedes aegypti]
          Length = 159

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           +  G +K ++  KG+GFI+P   T  GDD+F+H S +       L  G  V+Y
Sbjct: 64  IEEGKVKSFSRSKGHGFISP---TAGGDDIFVHISDIEGE-YVPL-PGDEVSY 111


>gi|242022944|ref|XP_002431897.1| calcium-regulated heat stable protein, putative [Pediculus humanus
           corporis]
 gi|212517238|gb|EEB19159.1| calcium-regulated heat stable protein, putative [Pediculus humanus
           corporis]
          Length = 132

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + +G++K +  +KG+GFIT   S  +G+D+F+H S +       L  G  V Y       
Sbjct: 47  IEKGTVKMFCREKGHGFIT---SNRTGEDIFVHISDIEGE-YVPL-PGDEVEYRLCPIPP 101

Query: 62  N-GKYSAENLKLV 73
              K  A ++ ++
Sbjct: 102 KFEKTQAVHVNII 114


>gi|226371922|gb|ACO51586.1| Calcium-regulated heat stable protein 1 [Rana catesbeiana]
          Length = 150

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K ++  KG+GFI PE   + G DVFLH S +     +   EG  VT+       
Sbjct: 65  VYKGVCKCFSRSKGHGFIIPE---DGGPDVFLHISDIEGE--YVPVEGDEVTFKICSIPP 119

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 120 KNEKRQAVEVVI 131


>gi|260428547|ref|ZP_05782526.1| cold shock DNA-binding domain protein [Citreicella sp. SE45]
 gi|260423039|gb|EEX16290.1| cold shock DNA-binding domain protein [Citreicella sp. SE45]
          Length = 180

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GF+  +   E G D+ LH + + + G  ++ +G  +    VQ    G 
Sbjct: 17 GKVKWFDPVKGFGFVVAD---EGGPDILLHANVLRNFGQSSVADGARIEV-AVQRTDRGI 72

Query: 65 YSAENLKLVPK 75
           + E   + P 
Sbjct: 73 QATEVHHIEPP 83



 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G ++   DVF+H   +  +GL +L  G+ +    + +   G  
Sbjct: 111 RVKWFDKAKGFGFANVFGRSD---DVFIHIEVLRRSGLADLQPGEALAIRLI-DGKRGLM 166

Query: 66  SAEN 69
           + E 
Sbjct: 167 ATEV 170


>gi|315499811|ref|YP_004088614.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
 gi|315417823|gb|ADU14463.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus
          CB 48]
          Length = 184

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G +KW++  KGYGFI P+    +G  DV LH SA+   G     EG  +     +    
Sbjct: 18 GRVKWFDAGKGYGFIVPQSPELTGMRDVLLHVSALRDMGRDLAHEGAAIECKIAKRAKG 76



 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 11/77 (14%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL--VTYDYVQN 59
           +   +IKW+N  KGYGF+          D+F+H   +   GL ++ +G    V +     
Sbjct: 115 LEAATIKWFNRTKGYGFVVR---GNDPTDIFIHIETLRRFGLEDIQQGDTLMVRF----- 166

Query: 60  DANGKYSAENLKLVPKS 76
              G       ++ PK+
Sbjct: 167 -GEGPKGLVVTEVQPKA 182


>gi|85813673|emb|CAG44466.1| putative cold shock protein [Streptomyces rimosus subsp.
          paromomycinus]
          Length = 76

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60
          +  G +KW++ ++G G +   G    G DV  +RSA+        LT G+ V+++ V++ 
Sbjct: 1  MPHGVVKWFDHERGAGLVAQTG---GGPDVLAYRSAIQGDEPARTLTTGERVSFNLVEDF 57

Query: 61 ANGKYSAENLKLVP 74
             +  AEN+  +P
Sbjct: 58 EGIR--AENIYRLP 69


>gi|83749695|ref|ZP_00946674.1| Cold shock protein [Ralstonia solanacearum UW551]
 gi|83723620|gb|EAP70819.1| Cold shock protein [Ralstonia solanacearum UW551]
          Length = 82

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVF 32
           +  G++KW+N  KG+GFITP+G    G D+F
Sbjct: 42 CMATGTVKWFNETKGFGFITPDG---GGADLF 70


>gi|114570048|ref|YP_756728.1| cold-shock DNA-binding protein family protein [Maricaulis maris
           MCS10]
 gi|114340510|gb|ABI65790.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10]
          Length = 174

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           +KW++  +GYGF+T +       DVFLH + +  AG  ++  G  +    V+    G  +
Sbjct: 110 VKWFDALRGYGFVTCDNVE---GDVFLHAATLRRAGFEDIQPGDRIEVRCVEG-PKGALA 165

Query: 67  AE 68
           AE
Sbjct: 166 AE 167



 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 1  MVH-RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M+   G +KWY+P +GYGFI    +++   D+ LH S +   G         +    VQ 
Sbjct: 13 MLELEGRVKWYDPARGYGFI---DASDGEGDILLHASCLRRFGQGPALPNAKIVCKAVQG 69

Query: 60 DANGKYSAENLKL 72
          D  G+ + E +++
Sbjct: 70 D-KGRQAVELVEM 81


>gi|170728619|ref|YP_001762645.1| cold-shock DNA-binding domain-containing protein [Shewanella
          woodyi ATCC 51908]
 gi|169813966|gb|ACA88550.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
          51908]
          Length = 206

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 12/58 (20%)

Query: 2  VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA--------SAGLFNLTEGQ 50
          + RG+ ++W N +KG+GFI PE    +G DVF+H SA+           G+  LTE Q
Sbjct: 1  MERGTLVRW-NDEKGFGFIKPETG--NGKDVFIHISALKHMARKPVIGDGILFLTEQQ 55


>gi|254293523|ref|YP_003059546.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
 gi|254042054|gb|ACT58849.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC
          49814]
          Length = 69

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K+YN ++G+G IT     ++  DV    SA+   G+  + E Q V ++   N  
Sbjct: 1  MIHGTVKYYNSEQGFGLITR---ADNEKDVRFTFSALKKLGITGIKERQKVKFETETNPD 57

Query: 62 NGKYSAENLKLV 73
           GK  A  L+LV
Sbjct: 58 TGKVIAVTLELV 69


>gi|213646239|ref|ZP_03376292.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. J185]
          Length = 45

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
             DVF+H SA+ S     L E Q V +   Q    G  +   + L
Sbjct: 1  GSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQG-PKGPSAVNVVAL 45


>gi|163746554|ref|ZP_02153912.1| cold shock protein [Oceanibulbus indolifex HEL-45]
 gi|161380439|gb|EDQ04850.1| cold shock protein [Oceanibulbus indolifex HEL-45]
          Length = 186

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++P KG+GF+  +     G DV LH + + + G  ++ +G  +T    Q D  G 
Sbjct: 25 GVVKWFDPVKGFGFVVADA---GGSDVLLHVNVLRNFGQSSIADGARITIRVQQTD-RGA 80

Query: 65 YSAENLKLVPK 75
           + E L + P 
Sbjct: 81 QAVEVLFIEPP 91



 Score = 54.6 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  E   DVFLH   +  +GL +L  G+ +    +  D  G  
Sbjct: 118 RVKWFDKAKGFGFANVFGRAE---DVFLHIDVLRQSGLCDLQPGEALAMRVIVGD-RGHL 173

Query: 66  SAEN 69
           +AE 
Sbjct: 174 AAEV 177


>gi|222480397|ref|YP_002566634.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
          ATCC 49239]
 gi|222453299|gb|ACM57564.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
          ATCC 49239]
          Length = 64

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G + ++N   GYGFI  + + E   DVF H   V   G  +L EGQ V +D  + + 
Sbjct: 1  MAKGKVDFFNDTGGYGFIESDDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEEAEK 54

Query: 62 NGKYSAENLKLV 73
            +  A N+  +
Sbjct: 55 GPR--ATNVTRL 64


>gi|157873211|ref|XP_001685119.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128190|emb|CAJ08321.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 461

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 46/118 (38%)

Query: 2   VHRGSIKWYNPDKGYGFITP--------EGSTESGD------------------------ 29
           ++ G +K YNP++G+GF+T         +GS                             
Sbjct: 334 LYEGFVKRYNPNRGFGFLTATTHVTVVNDGSNSDSATGTPIASLNNTTTAVPTTGEAETP 393

Query: 30  ----------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY--SAENLKLVPK 75
                     D+F+H+S++   G   L  G  V +       +G+    A N++L+P+
Sbjct: 394 KEYRTPVHLGDIFVHQSSMQMEGFRTLPVGGRVRFCI--GYKDGQQTLQAVNVELLPQ 449


>gi|222478487|ref|YP_002564724.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
          ATCC 49239]
 gi|222451389|gb|ACM55654.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
          ATCC 49239]
          Length = 64

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G + ++N   GYGFI  + + +   DVF H   V      +L EGQ + +D  ++  
Sbjct: 1  MATGKVDFFNDTGGYGFIETDDADD---DVFFHMEDVEG---PDLEEGQELEFDI-ESSP 53

Query: 62 NGKYSAENLK 71
           G  ++  ++
Sbjct: 54 KGPRASNVVR 63


>gi|323446578|gb|EGB02690.1| hypothetical protein AURANDRAFT_72835 [Aureococcus anophagefferens]
          Length = 411

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
            +W   ++G+GFI P+   + GDD+F H S + + G   L+EG  V +  V ++  GK  
Sbjct: 249 CRW--NERGFGFIKPD---DGGDDLFCHVSQI-TDG-NALSEGATVHFVKVFDERRGKDR 301

Query: 67  AENLK 71
           AE + 
Sbjct: 302 AEQVT 306


>gi|76802909|ref|YP_331004.1| cold shock protein [Natronomonas pharaonis DSM 2160]
 gi|76558774|emb|CAI50367.1| probable cold shock protein [Natronomonas pharaonis DSM 2160]
          Length = 64

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G + ++N   GYGFI  + S E   DVF H   +   G  +L EGQ V +D  Q D 
Sbjct: 1  MAKGEVDFFNDTGGYGFIDTDESDE---DVFFHMEDI---GGPDLEEGQEVEFDIEQADK 54

Query: 62 NGKYSAENLKLV 73
            +  A+NL  +
Sbjct: 55 GPR--AKNLTRL 64


>gi|218196316|gb|EEC78743.1| hypothetical protein OsI_18955 [Oryza sativa Indica Group]
          Length = 66

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +KW++  KG+GFIT E   +  +D+F+ +S++   G  ++ +G ++       D
Sbjct: 2  VKWFDTTKGFGFITLE---DGSEDLFVRQSSLKFDGYQSINDGDVIDLSVGSGD 52


>gi|120612145|ref|YP_971823.1| cold-shock DNA-binding domain-containing protein [Acidovorax
          citrulli AAC00-1]
 gi|120590609|gb|ABM34049.1| cold-shock DNA-binding domain protein [Acidovorax citrulli
          AAC00-1]
          Length = 224

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G I  +N  +G+GFI P    + GD VF+H  A    G      GQ V +  V+  
Sbjct: 1  MQFDGVIASWNDARGFGFIEP---LQGGDPVFVHIKAFQG-GAPRPQAGQRVRF-AVEAG 55

Query: 61 ANGKYSAENLK 71
            G+  A  ++
Sbjct: 56 PGGRKRACRVE 66


>gi|149176013|ref|ZP_01854630.1| Cold-shock DNA-binding domain [Planctomyces maris DSM 8797]
 gi|148845167|gb|EDL59513.1| Cold-shock DNA-binding domain [Planctomyces maris DSM 8797]
          Length = 195

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G I  ++ +KG+GFI+   S      VF+H SA + +       G  V+Y+    +
Sbjct: 1  MRSQGKITDWDDEKGFGFIS---SQNDDSSVFVHISAFSGSARR-PQAGDPVSYETAHEE 56

Query: 61 ANGKYSAENLKLVPKS 76
           NGK  AEN++   +S
Sbjct: 57 -NGKVRAENVRFSDQS 71


>gi|169235137|ref|YP_001688337.1| cold shock protein [Halobacterium salinarum R1]
 gi|167726203|emb|CAP12980.1| putative cold shock protein [Halobacterium salinarum R1]
          Length = 64

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G + ++N   GYGFI  E + E   DVF H   V   G  +L EGQ V +D  Q D 
Sbjct: 1  MATGEVDFFNDTGGYGFIETEDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54

Query: 62 NGKYSAENLKLV 73
            +  A NL  +
Sbjct: 55 GPR--ATNLTRL 64


>gi|297668993|ref|XP_002812703.1| PREDICTED: protein lin-28 homolog A-like [Pongo abelii]
          Length = 254

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 4   RGSIKWYNPDKGYGFI----TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
            G  KW+N   G+G +        + ++  DVF+H+S +      +L EG+ V + + ++
Sbjct: 93  EGICKWFNLFMGFGLLYVTACTVVALDTPVDVFVHQSKLHMEDFRSLKEGEAVEFTFKKS 152

Query: 60  DAN 62
              
Sbjct: 153 AKG 155


>gi|54024530|ref|YP_118772.1| putative cold shock protein [Nocardia farcinica IFM 10152]
 gi|54016038|dbj|BAD57408.1| putative cold shock protein [Nocardia farcinica IFM 10152]
          Length = 130

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          ++  +G+GFI PE   + G DVF+H + +       L +G++  +D  + D   K  A N
Sbjct: 11 FDSSRGFGFIRPE---DGGPDVFVHVNDIGLD-EDELRQGRVFEFDVTEGDRGPK--AIN 64

Query: 70 LKLV 73
          L  V
Sbjct: 65 LSAV 68


>gi|47216902|emb|CAG02074.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 151

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
            G  K ++  KG+GFITP   ++ G D+F+H S +     +   EG  V+Y  
Sbjct: 69  TGVCKCFSRSKGHGFITP---SDGGKDIFVHISDIEGE--YVPIEGDEVSYKI 116


>gi|149913750|ref|ZP_01902282.1| cold shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
 gi|149812034|gb|EDM71865.1| cold shock DNA-binding domain protein [Roseobacter sp. AzwK-3b]
          Length = 135

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  E   DVF+H   +  +GL +L  G+ +    ++    G+ 
Sbjct: 65  RVKWFDKGKGFGFANTFGRDE---DVFVHVEVLRRSGLADLQPGEALAMRVIEG-KRGRM 120

Query: 66  SAEN 69
           + E 
Sbjct: 121 ATEV 124


>gi|311740925|ref|ZP_07714752.1| cold-shock domain family protein [Corynebacterium
          pseudogenitalium ATCC 33035]
 gi|311304445|gb|EFQ80521.1| cold-shock domain family protein [Corynebacterium
          pseudogenitalium ATCC 33035]
          Length = 126

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF+    S    +DV++ R+ V   G+  L  GQ + +D+     
Sbjct: 1  MPIGKVKWYDAEKGFGFV----SNPGDEDVYVGRN-VLPKGVEELFPGQRIDFDFAAGRR 55

Query: 62 NGKYSAENLKLVPK 75
               A  +K++ K
Sbjct: 56 G--PQALRVKVLDK 67


>gi|319408547|emb|CBI82200.1| cold shock protein [Bartonella schoenbuchensis R1]
          Length = 191

 Score = 58.8 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI P+       D+ LH + +   G     EG  +     + +  
Sbjct: 28 GVIKWFDGSKGYGFIVPDLC--GLPDILLHVTVMRRDGFQTALEGAKIICVVKKTERG 83



 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + R  +KW++ DKG+GF++     +  +D+F+H   +   GL  L  GQ+V   + + + 
Sbjct: 117 LERAIVKWFDRDKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVIVRFGKGE- 172

Query: 62  NGKYSAE 68
            G  +AE
Sbjct: 173 KGLMTAE 179


>gi|19552047|ref|NP_600049.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
 gi|145294989|ref|YP_001137810.1| hypothetical protein cgR_0934 [Corynebacterium glutamicum R]
 gi|21323586|dbj|BAB98213.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032]
 gi|140844909|dbj|BAF53908.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 127

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KWY+ ++G+GF+    S   G+D F+    V   G+  L +GQ + +D+     
Sbjct: 1  MPVGTVKWYDAERGFGFV----SNPGGEDCFVG-KQVLPKGVTELHKGQRIDFDFA-AGR 54

Query: 62 NGKYS 66
           G  +
Sbjct: 55 KGPQA 59


>gi|89076176|ref|ZP_01162533.1| Predicted membrane protein [Photobacterium sp. SKA34]
 gi|89048126|gb|EAR53711.1| Predicted membrane protein [Photobacterium sp. SKA34]
          Length = 204

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59
          M  +G I  +N  KG+GFI P+       DVF H SA+       ++ E   VT+   + 
Sbjct: 1  MAQQGKIISWNQQKGFGFIAPD---NGEQDVFFHISALPDKQCRPHIDE--AVTFRIGK- 54

Query: 60 DANGKYSAENLK 71
          D  G+ SA  + 
Sbjct: 55 DKKGRMSATTVT 66


>gi|255324986|ref|ZP_05366093.1| cold-shock DNA-binding domain protein [Corynebacterium
          tuberculostearicum SK141]
 gi|255297975|gb|EET77285.1| cold-shock DNA-binding domain protein [Corynebacterium
          tuberculostearicum SK141]
          Length = 126

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF+    S    +DV++ R+ V   G+  L  GQ + +D+     
Sbjct: 1  MPIGKVKWYDAEKGFGFV----SNAGDEDVYVGRN-VLPKGVEELFPGQRIDFDFAAGRR 55

Query: 62 NGKYSAENLKLVPK 75
               A  +K++ K
Sbjct: 56 G--PQALRVKVLDK 67


>gi|162985|gb|AAA21677.1| transcription factor EF1(A) [Bos taurus]
          Length = 110

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 7/50 (14%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQ 50
           G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+
Sbjct: 61  GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGE 107


>gi|149203726|ref|ZP_01880695.1| cold shock DNA-binding domain protein [Roseovarius sp. TM1035]
 gi|149142843|gb|EDM30885.1| cold shock DNA-binding domain protein [Roseovarius sp. TM1035]
          Length = 177

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +KW++P KG+GF+  +   E G D+ LH + + + G  ++ +   V  D  Q +  G
Sbjct: 12 KGRVKWFDPVKGFGFVIAD---EGGPDILLHPNVLRNFGQSSVADRAGVELDVQQTE-RG 67

Query: 64 KYSAENLKLVPK 75
          + +     + P 
Sbjct: 68 RQAVAVHTISPP 79



 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  E   DVF+H   +  +GL ++  G+ +    + +   G+ 
Sbjct: 107 RVKWFDKGKGFGFANTFGRDE---DVFVHIEVLRRSGLADVQPGEALAIRVI-DGKRGRM 162

Query: 66  SAEN 69
           + E 
Sbjct: 163 ATEV 166


>gi|312887572|ref|ZP_07747166.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM
           18603]
 gi|311299942|gb|EFQ77017.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM
           18603]
          Length = 155

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++ ++N  KG+GFI    S ES   +F+H  A+  A    + E   VT++  Q    G
Sbjct: 90  KGTVTFFNESKGFGFIQDSVSQES---IFVHVKALEEA----IKENDKVTFETEQG-LKG 141

Query: 64  KYSAENLKLVPKS 76
             + +  K V +S
Sbjct: 142 LSAIKVKKAVKES 154


>gi|86134369|ref|ZP_01052951.1| cold shock protein [Polaribacter sp. MED152]
 gi|85821232|gb|EAQ42379.1| cold shock protein [Polaribacter sp. MED152]
          Length = 63

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  KG+GF+  +GS       F+H S +    +  + EG  V +D  +   
Sbjct: 1  MKNGTVKFFNESKGFGFVIEDGSKTE---YFVHVSGL----IDEIREGDAVEFDLKEGRK 53

Query: 62 NGKYSAENLKLV 73
              +A +++++
Sbjct: 54 G--LNAVDVRVI 63


>gi|83942584|ref|ZP_00955045.1| cold shock DNA-binding domain protein [Sulfitobacter sp. EE-36]
 gi|83953825|ref|ZP_00962546.1| cold shock DNA-binding domain protein [Sulfitobacter sp. NAS-14.1]
 gi|83841770|gb|EAP80939.1| cold shock DNA-binding domain protein [Sulfitobacter sp. NAS-14.1]
 gi|83846677|gb|EAP84553.1| cold shock DNA-binding domain protein [Sulfitobacter sp. EE-36]
          Length = 169

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G ++   D+FLH   +  +GL +L  G+ +    + N   G+ 
Sbjct: 94  RVKWFDKSKGFGFANVFGKSD---DIFLHIEVLRQSGLSDLQPGEALALRVI-NGERGQM 149

Query: 66  SAEN 69
           +AE 
Sbjct: 150 AAEV 153



 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW++P KG+GF+  +     G D+ LH + + + G  ++ +G  +    VQ    G  +
Sbjct: 2  VKWFDPAKGFGFVVSDA---GGPDILLHVNVLRNYGQSSVADGARIDL-TVQKTERGVQA 57

Query: 67 AENLKLVPKSS 77
           +   + P ++
Sbjct: 58 TQVHAVHPPAA 68


>gi|12862280|dbj|BAB32397.1| unnamed protein product [Mus musculus]
 gi|148685263|gb|EDL17210.1| mCG147570 [Mus musculus]
          Length = 199

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60
           G++K +    GYGFI      ++ +D+F+H++A+        L ++ +G+   +D V+ +
Sbjct: 55  GTVKGFKVRNGYGFI---NRNDTKEDIFVHQTAIKKNNPRKYLRSVGDGETEEFDVVEGE 111

Query: 61  ANGKYSAEN 69
            +G  +A  
Sbjct: 112 -SGAEAANV 119


>gi|289643977|ref|ZP_06476078.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
 gi|289506205|gb|EFD27203.1| cold-shock DNA-binding domain protein [Frankia symbiont of
          Datisca glomerata]
          Length = 146

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQN 59
          MV  G I  ++  +GYGFI P+     GDD+F+H + +      +L   G LV ++  ++
Sbjct: 1  MVGTGRILRFDGVRGYGFIAPDA---GGDDIFMHANDLQDE--KHLFQPGTLVEFEAEES 55

Query: 60 DANGKYSAENLKLVPKSS 77
          D   K  A  ++L  ++ 
Sbjct: 56 DRGPK--ASVVRLARRAQ 71


>gi|311748237|ref|ZP_07722022.1| cold shock protein [Algoriphagus sp. PR1]
 gi|126576729|gb|EAZ80977.1| cold shock protein [Algoriphagus sp. PR1]
          Length = 63

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K+YN  KG+GFI  +   E+  D+F+H + +    +  + +   VTYD  ++  
Sbjct: 1  MFTGTVKFYNDAKGFGFIVDD---ETQSDIFVHATGL----VDKVAQNDKVTYDI-KDGK 52

Query: 62 NGKYSAENLKL 72
           G   A N+K+
Sbjct: 53 KGPN-AINVKI 62


>gi|323166493|gb|EFZ52256.1| cold shock-like protein cspI [Shigella sonnei 53G]
          Length = 41

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          F+H SA+   G   L EGQ V ++  Q+   G  +A N+  +
Sbjct: 2  FVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKGP-AAVNVTAI 41


>gi|254488265|ref|ZP_05101470.1| cold shock protein [Roseobacter sp. GAI101]
 gi|214045134|gb|EEB85772.1| cold shock protein [Roseobacter sp. GAI101]
          Length = 182

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +KW++P KG+GF+  +   E G D+ LH + + + G  ++ +G  +     +   
Sbjct: 10 VTTGLVKWFDPAKGFGFVVSD---EGGPDILLHVNVLRNYGQSSVADGARIELTAHETQ- 65

Query: 62 NGKYSAENLKLVPKS 76
           G  + +   + P  
Sbjct: 66 RGVQATQVHAIYPPQ 80



 Score = 56.1 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G ++   D+FLH   +  +GL +L  G+ +    +  +  G  
Sbjct: 107 RVKWFDKSKGFGFANVFGRSD---DIFLHIEVLRQSGLSDLQPGEALALRVIMGE-RGHM 162

Query: 66  SAEN 69
           +AE 
Sbjct: 163 AAEV 166


>gi|292654673|ref|YP_003534570.1| cold shock protein [Haloferax volcanii DS2]
 gi|17148925|gb|AAL35837.1|AF442116_1 conditioned medium-induced protein 9 [Haloferax volcanii]
 gi|291371479|gb|ADE03706.1| cold shock protein [Haloferax volcanii DS2]
          Length = 64

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G + ++N   GYGFI+ + + +   DVF H   V   G  +L EGQ + +D  Q   
Sbjct: 1  MAKGKVDFFNDTGGYGFISTDDADD---DVFFHMEDV---GGPDLEEGQEIEFDIEQAPK 54

Query: 62 NGKYSAENLKLV 73
            +  A N+  +
Sbjct: 55 GPR--ATNVTRL 64


>gi|256545437|ref|ZP_05472799.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|256398833|gb|EEU12448.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170]
          Length = 68

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQN 59
          M   G +K+++  KG+GFI  E       D F H S + S      +  G  V +D    
Sbjct: 1  MKMEGKVKFFDNKKGFGFIESESG-----DYFFHYSEIISDKVYKTIENGARVEFDVKDF 55

Query: 60 DANGKYSAENLK 71
                +A N+K
Sbjct: 56 GRG--DTAFNVK 65


>gi|83951849|ref|ZP_00960581.1| cold shock DNA-binding domain protein [Roseovarius nubinhibens ISM]
 gi|83836855|gb|EAP76152.1| cold shock DNA-binding domain protein [Roseovarius nubinhibens ISM]
          Length = 129

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            IKW++  KG+GF    G  E   DVF+H   +  +GL +L  G+ +    ++    G+ 
Sbjct: 57  RIKWFDKGKGFGFANTFGREE---DVFVHIEVLRRSGLADLQPGEALAIRVIEG-KRGRM 112

Query: 66  SAEN 69
           + E 
Sbjct: 113 ATEV 116


>gi|330867254|gb|EGH01963.1| cold shock protein [Pseudomonas syringae pv. aesculi str.
          0893_23]
 gi|330876902|gb|EGH11051.1| cold shock protein [Pseudomonas syringae pv. glycinea str. race
          4]
 gi|330877324|gb|EGH11473.1| cold shock protein [Pseudomonas syringae pv. morsprunorum str.
          M302280PT]
 gi|330957738|gb|EGH57998.1| cold shock protein [Pseudomonas syringae pv. maculicola str.
          ES4326]
 gi|330966551|gb|EGH66811.1| cold shock protein [Pseudomonas syringae pv. actinidiae str.
          M302091]
 gi|330984849|gb|EGH82952.1| cold shock protein [Pseudomonas syringae pv. lachrymans str.
          M301315]
 gi|331010117|gb|EGH90173.1| cold shock protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 45

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          SGDD+F+H  A+ S G  +L EGQ V++   +        AE ++++
Sbjct: 1  SGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQKG--MQAEEVQVI 45


>gi|326318173|ref|YP_004235845.1| cold-shock DNA-binding domain-containing protein [Acidovorax
          avenae subsp. avenae ATCC 19860]
 gi|323375009|gb|ADX47278.1| cold-shock DNA-binding domain protein [Acidovorax avenae subsp.
          avenae ATCC 19860]
          Length = 224

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G I  +N  +G+GFI P    + GD VF+H  A    G      GQ V +  V+  
Sbjct: 1  MQFDGMIASWNDARGFGFIEP---LQGGDPVFVHIKAFQG-GASRPQAGQRVRF-AVEAG 55

Query: 61 ANGKYSAENLK 71
            G+  A  ++
Sbjct: 56 PGGRKRACRVE 66


>gi|296313742|ref|ZP_06863683.1| cold-shock DNA-binding domain protein [Neisseria polysaccharea
          ATCC 43768]
 gi|296839665|gb|EFH23603.1| cold-shock DNA-binding domain protein [Neisseria polysaccharea
          ATCC 43768]
          Length = 191

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQNDANGKY 65
          +KW + +KGYGFI  +G      ++F H S  +       L E   V+++ V +D  G++
Sbjct: 6  VKW-DDEKGYGFIRIDG---GNKEIFCHISDFLQRNPRPGLDE--QVSFEVV-SDGKGRF 58

Query: 66 SAENLKLVPKS 76
          SA+ ++ + + 
Sbjct: 59 SAKQIRYLNRE 69


>gi|42518906|ref|NP_964836.1| cold shock protein [Lactobacillus johnsonii NCC 533]
 gi|227889765|ref|ZP_04007570.1| cold-shock protein [Lactobacillus johnsonii ATCC 33200]
 gi|268319696|ref|YP_003293352.1| Cold shock protein B [Lactobacillus johnsonii FI9785]
 gi|41583192|gb|AAS08802.1| cold shock protein [Lactobacillus johnsonii NCC 533]
 gi|227849629|gb|EEJ59715.1| cold-shock protein [Lactobacillus johnsonii ATCC 33200]
 gi|262398071|emb|CAX67085.1| Cold shock protein B [Lactobacillus johnsonii FI9785]
 gi|329667548|gb|AEB93496.1| cold shock protein [Lactobacillus johnsonii DPC 6026]
          Length = 69

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K ++P+  YGFI  + +  S    F+   ++   G   L  GQ V Y   Q   
Sbjct: 1  MRKGTVKQFDPNSAYGFIEDDLTHSS---YFVFYKSIKEEGYKKLNVGQRVRYQLAQGKK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|86136205|ref|ZP_01054784.1| hypothetical protein MED193_18819 [Roseobacter sp. MED193]
 gi|85827079|gb|EAQ47275.1| hypothetical protein MED193_18819 [Roseobacter sp. MED193]
          Length = 463

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
          +G IK +  DKG+GFI  +G +E   DVF H + V  + +     G++V +D  ++    
Sbjct: 2  QGKIKAFIHDKGFGFIEVDGQSE---DVFFHITTVKDSSVR-CAVGEIVDFDAAESKRKP 57

Query: 63 GKYSAENLKL 72
          G   A N++L
Sbjct: 58 GTLEARNVRL 67


>gi|322370080|ref|ZP_08044642.1| cold shock protein [Haladaptatus paucihalophilus DX253]
 gi|320550416|gb|EFW92068.1| cold shock protein [Haladaptatus paucihalophilus DX253]
          Length = 64

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G + ++N   GYGFI+ + + +   DVF H   V  A   +L EGQ + +D  Q   
Sbjct: 1  MAKGKVDFFNDTGGYGFISTDDADD---DVFFHMEDVGGA---DLEEGQEIEFDIEQAPK 54

Query: 62 NGKYSAENLKLV 73
            +  A+N+  +
Sbjct: 55 GPR--AKNVTRL 64


>gi|47206294|emb|CAF93182.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 158

 Score = 58.0 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G  K ++  +G+GFI P   +  G+D+F+H S +     +   EG  VTY   +     
Sbjct: 75  KGVCKNFSRSQGHGFIRP---SNGGEDIFVHISDIEGE--YVPVEGDEVTYKVSRIPPKN 129

Query: 64  -KYSAENLKL 72
            K  A  +K+
Sbjct: 130 LKVQAVEVKI 139


>gi|330507709|ref|YP_004384137.1| cold shock DNA binding domain-containing protein [Methanosaeta
          concilii GP-6]
 gi|328928517|gb|AEB68319.1| cold shock DNA binding domain protein [Methanosaeta concilii
          GP-6]
          Length = 64

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N  K +GFI  +     G D F+H + +       + EG  V++D ++ + 
Sbjct: 1  MVDGTVKFFNRVKNFGFIAGD----DGKDYFVHVTGLKPG--VAIDEGDKVSFDVIEGEK 54

Query: 62 NGK 64
            K
Sbjct: 55 GPK 57


>gi|330893719|gb|EGH26380.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          mori str. 301020]
          Length = 48

 Score = 58.0 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 26 ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
          +SGDD+F+H  A+ S G  +L EGQ VT+  VQ        A+ ++
Sbjct: 2  QSGDDLFVHFKAIESDGFKSLKEGQKVTFVAVQGQKG--MQADEVQ 45


>gi|116629830|ref|YP_815002.1| cold shock protein [Lactobacillus gasseri ATCC 33323]
 gi|238853977|ref|ZP_04644334.1| conserved domain protein [Lactobacillus gasseri 202-4]
 gi|282851661|ref|ZP_06261026.1| cold-shock DNA-binding domain protein [Lactobacillus gasseri
          224-1]
 gi|300361466|ref|ZP_07057643.1| cold-shock protein [Lactobacillus gasseri JV-V03]
 gi|311110528|ref|ZP_07711925.1| conserved domain protein [Lactobacillus gasseri MV-22]
 gi|116095412|gb|ABJ60564.1| cold-shock DNA-binding protein family [Lactobacillus gasseri ATCC
          33323]
 gi|238833422|gb|EEQ25702.1| conserved domain protein [Lactobacillus gasseri 202-4]
 gi|282557629|gb|EFB63226.1| cold-shock DNA-binding domain protein [Lactobacillus gasseri
          224-1]
 gi|300354085|gb|EFJ69956.1| cold-shock protein [Lactobacillus gasseri JV-V03]
 gi|311065682|gb|EFQ46022.1| conserved domain protein [Lactobacillus gasseri MV-22]
          Length = 69

 Score = 57.7 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++K ++ +  YGFI  + +  S    F+   ++   G   L  GQ V Y   Q   
Sbjct: 1  MRKGTVKQFDSNSAYGFIEDDLTHSS---YFVFYKSIKEEGYKKLNVGQRVRYQLAQGKK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|289705444|ref|ZP_06501838.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58]
 gi|289557829|gb|EFD51126.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58]
          Length = 130

 Score = 57.7 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G IK+Y+  KG+GF      T+ G++V +  SA+  AG+  L  G  V +   +   
Sbjct: 4  MPTGRIKFYDSTKGFGF----AQTDEGEEVHVPASAL-PAGVTELRGGTRVEFGVAEG-R 57

Query: 62 NGKYS 66
           GK +
Sbjct: 58 RGKQA 62


>gi|62389710|ref|YP_225112.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
 gi|41325045|emb|CAF19526.1| Cold shock protein [Corynebacterium glutamicum ATCC 13032]
          Length = 127

 Score = 57.7 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++KWY+ ++G+GF+    S   G+D F+    V   G+  L +GQ + +D+     
Sbjct: 1  MPVGTVKWYDAERGFGFV----SNPGGEDCFVG-KQVLPKGVTELHKGQRIDFDFAAAGK 55

Query: 62 NGKYSAENLKLVP 74
               A  +K++ 
Sbjct: 56 G--PQALRIKILE 66


>gi|219130830|ref|XP_002185558.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402966|gb|EEC42923.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 297

 Score = 57.7 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 8/75 (10%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA----VASAGLFNL--TEGQLVTYDY 56
             G +K+Y  DKGYGFIT +G+ +   D+FLHR+A    V    L +    E + V++D 
Sbjct: 33  KTGKVKFYLRDKGYGFITADGAGDG--DIFLHRTAFVTHVPPEHLRHPFAREHERVSFDT 90

Query: 57  VQNDANGKYSAENLK 71
             + ++G+  A N+ 
Sbjct: 91  QVDASSGQTRAVNVT 105


>gi|124003277|ref|ZP_01688127.1| conserved domain protein [Microscilla marina ATCC 23134]
 gi|123991375|gb|EAY30806.1| conserved domain protein [Microscilla marina ATCC 23134]
          Length = 64

 Score = 57.7 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G +K++  DKGYGFIT   ++++G+D+F H S         L E   VTY+  +   
Sbjct: 1  MNKGVVKFFKEDKGYGFIT---NSDTGEDIFFHVSDTQDQ----LFENDNVTYE--ETRG 51

Query: 62 NGKYSAENLKL 72
               A ++KL
Sbjct: 52 KKGMQATDVKL 62


>gi|213512442|ref|NP_001133414.1| cold shock domain-containing protein C2 [Salmo salar]
 gi|209153912|gb|ACI33188.1| Cold shock domain-containing protein C2 [Salmo salar]
          Length = 159

 Score = 57.7 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G  K +   +G+GFI P   T  GDD+F+H S +     +   EG  VTY   +     
Sbjct: 72  KGVCKSFCRSQGHGFIRP---TNGGDDIFVHISDIEGE--YVPVEGDEVTYKVSRIPPKN 126

Query: 64  -KYSAENLKLV 73
            K  A  +K+V
Sbjct: 127 LKIQAVEVKIV 137


>gi|296133967|ref|YP_003641214.1| cold-shock DNA-binding domain protein [Thermincola sp. JR]
 gi|296032545|gb|ADG83313.1| cold-shock DNA-binding domain protein [Thermincola potens JR]
          Length = 714

 Score = 57.7 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G+IK   P+K +GFI  +     G+DVF   S +  A      EG  V ++  Q + 
Sbjct: 1  MTEGTIKKLFPEKQFGFIQLD---NDGEDVFFRFSLLKGA---KPYEGMRVGFEIEQGEK 54

Query: 62 NGKYSAENLKLVPKSSN 78
            +  A NL++V   S 
Sbjct: 55 GPR--ARNLRIVEDGSK 69


>gi|298253963|ref|ZP_06977550.1| cold shock protein [Gardnerella vaginalis 5-1]
 gi|297532106|gb|EFH71081.1| cold shock protein [Gardnerella vaginalis 5-1]
          Length = 124

 Score = 57.7 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          WY+  KGYGFI  +     G DVFL  +A+    + +L +G  V +  ++     +    
Sbjct: 3  WYDTQKGYGFIVGD----DGKDVFLPAAALPVT-VKSLHKGTRVEFSVIEGRKGPQAMGL 57

Query: 69 NL 70
          N+
Sbjct: 58 NV 59


>gi|239916954|ref|YP_002956512.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC
          2665]
 gi|281414588|ref|ZP_06246330.1| cold shock protein [Micrococcus luteus NCTC 2665]
 gi|239838161|gb|ACS29958.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC
          2665]
          Length = 127

 Score = 57.7 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G IK+Y+  KG+GF      T+ G++V +  SA+  AG+  L  G  V +   +   
Sbjct: 1  MPTGRIKFYDSTKGFGF----AQTDEGEEVHVPASAL-PAGVTELRGGTRVEFGVAEG-R 54

Query: 62 NGKYS 66
           GK +
Sbjct: 55 RGKQA 59


>gi|148284974|ref|YP_001249064.1| cold shock-like protein [Orientia tsutsugamushi str. Boryong]
 gi|189184097|ref|YP_001937882.1| cold shock protein [Orientia tsutsugamushi str. Ikeda]
 gi|146740413|emb|CAM80883.1| Cold shock-like protein [Orientia tsutsugamushi str. Boryong]
 gi|189180868|dbj|BAG40648.1| cold shock protein [Orientia tsutsugamushi str. Ikeda]
          Length = 73

 Score = 57.7 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 5/74 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESG---DDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          +  G +KWYN  KGYGFI P    + G   +DVF+H +AV +AG+ +L EGQ V++    
Sbjct: 1  MATGIVKWYNSVKGYGFIQPSEKVKDGGKMEDVFVHATAVVAAGVADLKEGQRVSFQI-- 58

Query: 59 NDANGKYSAENLKL 72
              G+  A NL L
Sbjct: 59 GSQKGRIYATNLVL 72


>gi|154340327|ref|XP_001566120.1| RNA binding protein rbp16 [Leishmania braziliensis
          MHOM/BR/75/M2904]
 gi|134063439|emb|CAM39618.1| putative RNA binding protein rbp16 [Leishmania braziliensis
          MHOM/BR/75/M2904]
          Length = 143

 Score = 57.7 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
          +++ G +  +   +G+GFI      +     F+H SA+ +   G   L   Q V ++   
Sbjct: 16 LLNTGKVVSWMSGRGFGFIEDNADKKQH---FVHFSALQTETGGYRALAVDQEVEFEVA- 71

Query: 59 NDANGKYSAENLK 71
             +G+  AEN+ 
Sbjct: 72 -SQDGRTRAENVT 83


>gi|163750506|ref|ZP_02157745.1| cold shock domain family protein [Shewanella benthica KT99]
 gi|161329827|gb|EDQ00815.1| cold shock domain family protein [Shewanella benthica KT99]
          Length = 198

 Score = 57.7 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 2  VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + +G  ++W N DKG+GFI PE  T +G DVF+H S +       +  G  + Y   Q  
Sbjct: 3  MEKGILVRWKN-DKGFGFIEPE--TANGKDVFIHISELKHMARKPIV-GDSIEYR-TQQQ 57

Query: 61 ANGKYSAENLKL 72
          A+GK+ A N  +
Sbjct: 58 ADGKFKAINASI 69


>gi|223992615|ref|XP_002285991.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977306|gb|EED95632.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 50

 Score = 57.3 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G++KWYN ++G+GFI  +   + G D+++H + +   G   L E + V +
Sbjct: 2  TGTVKWYNAERGFGFIAID---DGGADMYVHATGLTFDG--PLIENERVGF 47


>gi|255513631|gb|EET89896.1| cold-shock DNA-binding domain protein [Candidatus Micrarchaeum
          acidiphilum ARMAN-2]
          Length = 57

 Score = 57.3 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +N ++G+GFIT     E G D+++H +A+   G   L  G  V Y+  Q +   +  
Sbjct: 2  FNSERGFGFIT----GEDGKDIYVHSTAIE--GGATLAVGDAVEYEVEQAERGPRAK 52


>gi|149176125|ref|ZP_01854741.1| cold-shock DNA-binding domain protein [Planctomyces maris DSM
          8797]
 gi|148844992|gb|EDL59339.1| cold-shock DNA-binding domain protein [Planctomyces maris DSM
          8797]
          Length = 66

 Score = 57.3 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G IK    D+G+GFI  E       D+F H S V    L  L EGQ+V Y+  Q   
Sbjct: 1  MPQGKIKRIVSDRGFGFIEGERG-----DLFFHYSEVQGVTLEELQEGQMVEYEVGQGRK 55

Query: 62 NGKYSAENLKLV 73
               A  +K+V
Sbjct: 56 G--PCATGVKVV 65


>gi|91794216|ref|YP_563867.1| hypothetical protein Sden_2865 [Shewanella denitrificans OS217]
 gi|91716218|gb|ABE56144.1| protein of unknown function DUF1294 [Shewanella denitrificans
          OS217]
          Length = 196

 Score = 57.3 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W + DKG+GFI P  +   G +VFLH SA+ +A      E  ++TY  V  
Sbjct: 1  MRVKGKLVRW-DDDKGFGFIRPNLT---GPEVFLHISALRNASRR-PQEDDVITYALV-A 54

Query: 60 DANGKYSAENLKL 72
          D  G+ +A N  L
Sbjct: 55 DKQGRPTAANATL 67


>gi|308497192|ref|XP_003110783.1| CRE-CEY-4 protein [Caenorhabditis remanei]
 gi|308242663|gb|EFO86615.1| CRE-CEY-4 protein [Caenorhabditis remanei]
          Length = 289

 Score = 57.3 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58
            G +KW++    YGF+    +++  +D F+H++A+A +      L  L + + V +D V+
Sbjct: 95  NGIVKWFSVRGRYGFVAR--ASDEKEDFFVHQTAIAKSSTIKYYLRTLDDEEPVVFDIVE 152

Query: 59  NDANGKYSAEN 69
               G  +A  
Sbjct: 153 G-RKGPEAANV 162


>gi|292656120|ref|YP_003536017.1| cold shock protein [Haloferax volcanii DS2]
 gi|291371726|gb|ADE03953.1| cold shock protein [Haloferax volcanii DS2]
          Length = 64

 Score = 57.3 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI+ + + +   DVF H   +   G  +L EG  V +D  Q   
Sbjct: 1  MAKGNVDFFNDTGGYGFISTDDADD---DVFFHMEDI---GGPDLEEGTDVEFDIEQAPK 54

Query: 62 NGKYSAENLKLV 73
            +  A NL  +
Sbjct: 55 GPR--ATNLTRL 64


>gi|149176767|ref|ZP_01855378.1| probable cold shock protein scoF [Planctomyces maris DSM 8797]
 gi|148844408|gb|EDL58760.1| probable cold shock protein scoF [Planctomyces maris DSM 8797]
          Length = 65

 Score = 57.3 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G+IK     KG+GFI     TESG D+F H S +       L EGQ V++   + + 
Sbjct: 1  MAEGTIKKV-TQKGFGFI----DTESGKDLFFHSSNLEGVSFEQLYEGQRVSFTEGRGEK 55

Query: 62 NGKYSAENLKLV 73
            +  AEN+K +
Sbjct: 56 GPR--AENVKPI 65


>gi|213023272|ref|ZP_03337719.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
 gi|213609835|ref|ZP_03369661.1| cold shock protein CspE [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
          Length = 38

 Score = 57.3 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          H SA+ + G   L EGQ V ++   N A G  +A    L
Sbjct: 1  HFSAIQTNGFKTLAEGQRVEFEIT-NGAKGPSAANVTAL 38


>gi|47226133|emb|CAG04507.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 166

 Score = 57.3 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K ++  +G+GFI P   +  G+D+F+H S +    +    EG  VTY       
Sbjct: 81  VYKGVCKNFSRSQGHGFIRP---SHGGEDIFVHVSDIEGEYVPT--EGDEVTYKVCPIPP 135

Query: 61  ANGKYSAENLKL 72
            N K+ A ++ +
Sbjct: 136 KNQKFQAVDVVI 147


>gi|302865005|ref|YP_003833642.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029]
 gi|302567864|gb|ADL44066.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC
          27029]
          Length = 123

 Score = 57.3 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KWY+  KGYGF+T    ++ G DVFL + A+  AG+ +L  GQ V +  V +       
Sbjct: 1  MKWYDAAKGYGFVT----SDEGGDVFLPKGAL-PAGVADLKGGQRVDFSVVDSRRG--AQ 53

Query: 67 AENLKLVP 74
          A  +KL+ 
Sbjct: 54 AMGVKLLE 61


>gi|315501502|ref|YP_004080389.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
 gi|315408121|gb|ADU06238.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5]
          Length = 123

 Score = 57.3 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KWY+  KGYGF+T    ++ G DVFL + A+  AG+ +L  GQ V +  V +       
Sbjct: 1  MKWYDAAKGYGFVT----SDEGGDVFLPKGAL-PAGVADLKGGQRVDFSVVDSRRG--AQ 53

Query: 67 AENLKLVP 74
          A  +KL+ 
Sbjct: 54 AMGVKLLE 61


>gi|306835559|ref|ZP_07468572.1| cold-shock domain family protein [Corynebacterium accolens ATCC
          49726]
 gi|304568559|gb|EFM44111.1| cold-shock domain family protein [Corynebacterium accolens ATCC
          49726]
          Length = 126

 Score = 57.3 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF+    S    +DV++ R+ V   G+  +  GQ + +D+     
Sbjct: 1  MPIGKVKWYDAEKGFGFV----SNPGDEDVYVGRN-VLPQGVEEIFPGQRIEFDFAAGRR 55

Query: 62 NGKYSAENLKLVPK 75
               A  ++++ K
Sbjct: 56 G--PQALRVRVLDK 67


>gi|227501406|ref|ZP_03931455.1| cold shock protein [Corynebacterium accolens ATCC 49725]
 gi|227077431|gb|EEI15394.1| cold shock protein [Corynebacterium accolens ATCC 49725]
          Length = 126

 Score = 57.3 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KWY+ +KG+GF+    S    +DV++ R+ V   G+  +  GQ + +D+     
Sbjct: 1  MPIGKVKWYDAEKGFGFV----SNPGDEDVYVGRN-VLPKGVEEIFPGQRIEFDFAAGRR 55

Query: 62 NGKYSAENLKLVPK 75
               A  ++++ K
Sbjct: 56 G--PQALRVRVLDK 67


>gi|313675263|ref|YP_004053259.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM
          4126]
 gi|312941961|gb|ADR21151.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM
          4126]
          Length = 63

 Score = 56.9 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K++N DKG+GFI  + +      +F+H S +       + +   VT++      
Sbjct: 1  MSTGTVKFFNEDKGFGFIIEDETENE---IFVHVSGLEDD----IEKNDKVTFETTDGKK 53

Query: 62 N 62
           
Sbjct: 54 G 54


>gi|110637372|ref|YP_677579.1| cold-shock DNA-binding protein family protein [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110280053|gb|ABG58239.1| cold-shock DNA-binding protein family [Cytophaga hutchinsonii ATCC
           33406]
          Length = 151

 Score = 56.9 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V +G + ++N  KGYGFI    + ES   +F+H + +    + ++ E   VT++      
Sbjct: 88  VRKGIVTFFNDSKGYGFIKDMDTQES---IFVHINGL----VDSIKENNKVTFEVEMGPK 140

Query: 62  NGKYSAENLK 71
                A  L 
Sbjct: 141 GPNAVAVKLS 150


>gi|298209155|ref|YP_003717334.1| cold shock protein, putative DNA-binding protein [Croceibacter
          atlanticus HTCC2559]
 gi|83849082|gb|EAP86951.1| cold shock protein, putative DNA-binding protein [Croceibacter
          atlanticus HTCC2559]
          Length = 63

 Score = 56.9 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 9/72 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K++N  KG+GFIT    +E+ ++ F+H S +    +  ++EG  V +D  ++  
Sbjct: 1  MKNGRVKFFNDTKGFGFIT---DSETSEEYFVHVSGL----IDRISEGDHVAFDL-KDGK 52

Query: 62 NGKYSAENLKLV 73
           G  +A ++++V
Sbjct: 53 KG-LNAIDVRVV 63


>gi|256842894|ref|ZP_05548382.1| cold shock protein [Lactobacillus crispatus 125-2-CHN]
 gi|256848732|ref|ZP_05554166.1| cold shock protein [Lactobacillus crispatus MV-1A-US]
 gi|293381728|ref|ZP_06627709.1| cold-shock DNA-binding domain protein [Lactobacillus crispatus
          214-1]
 gi|295692698|ref|YP_003601308.1| cold shock protein [Lactobacillus crispatus ST1]
 gi|312977588|ref|ZP_07789335.1| conserved domain protein [Lactobacillus crispatus CTV-05]
 gi|256614314|gb|EEU19515.1| cold shock protein [Lactobacillus crispatus 125-2-CHN]
 gi|256714271|gb|EEU29258.1| cold shock protein [Lactobacillus crispatus MV-1A-US]
 gi|290921775|gb|EFD98796.1| cold-shock DNA-binding domain protein [Lactobacillus crispatus
          214-1]
 gi|295030804|emb|CBL50283.1| Cold shock protein [Lactobacillus crispatus ST1]
 gi|310895327|gb|EFQ44394.1| conserved domain protein [Lactobacillus crispatus CTV-05]
          Length = 67

 Score = 56.9 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K ++    YGFI  + + +S    F+   A+   G   L  GQ V Y   Q   
Sbjct: 1  MRLGTVKQFDEGSSYGFIEDDRNHKS---YFVFYKAIKEEGYKTLQVGQRVKYQLAQGKN 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|323452578|gb|EGB08452.1| hypothetical protein AURANDRAFT_64076 [Aureococcus anophagefferens]
          Length = 1465

 Score = 56.9 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 5    GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
            G++ W+N  K +GF+ P+G    G DVF+H S V       L  G  V YD  +    G+
Sbjct: 1314 GTVLWFN--KSHGFVQPDG---GGADVFVHLSDVCG----VLKAGDRVLYDVTR--FKGR 1362

Query: 65   YSAENL 70
                ++
Sbjct: 1363 DKCVDV 1368


>gi|114798263|ref|YP_760667.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
 gi|114738437|gb|ABI76562.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444]
          Length = 175

 Score = 56.9 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESG--DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGFI  E S+E+    DV LH S +   G     EG  +  D V+ +  
Sbjct: 23 GRIKWFDSAKGYGFIVAESSSEADMTGDVLLHISCLRDYGENYADEGAKIVCDAVRKERG 82

Query: 63 GKYS 66
           + +
Sbjct: 83 WQTA 86



 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           ++KW+N  +GYGF+  +G      D+F+H  A   AG  ++  G  +    ++  A G
Sbjct: 112 TLKWFNRTRGYGFVLRDGQE---TDIFVHAVAFRKAGYEDIEPGTRIDV-IIEVGAKG 165


>gi|261327789|emb|CBH10766.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 505

 Score = 56.9 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 38/112 (33%)

Query: 3   HRGSIKWYNPDKGYGFITP-----------------EGSTESGD---------------- 29
           + G +K YNP +G+GF+T                  +G+ +                   
Sbjct: 215 YEGIVKRYNPMRGFGFLTATHHLQVTSPSGGSGTFSDGNADGRSRQQQQATPPQPTLERT 274

Query: 30  -----DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
                DVF+H+S +   G   L+ G  V +   +        A +++L+  +
Sbjct: 275 PVAVGDVFVHQSYIRMHGFRALSAGDRVAFRVGKLPGKDANQAVSVQLLATA 326


>gi|148673096|gb|EDL05043.1| lin-28 homolog B (C. elegans), isoform CRA_a [Mus musculus]
          Length = 233

 Score = 56.9 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 15 GYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G+GFI+    EG+      DVF+H+S +   G  +L EG+ V + + ++   
Sbjct: 2  GFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSPKG 53


>gi|218676684|ref|YP_002395503.1| hypothetical protein VS_II0921 [Vibrio splendidus LGP32]
 gi|218324952|emb|CAV26780.1| Hypothetical protein VS_II0921 [Vibrio splendidus LGP32]
          Length = 81

 Score = 56.9 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG I W++ + G+GF  P+       DV +H S +   G  NL EGQ V  +  +     
Sbjct: 5  RGYITWFHLENGFGFAKPDHGDI---DVLIHISIIEFDGEINLEEGQRVYLELEEVKDKP 61

Query: 64 KYSAENLKLVP 74
           ++A  +K++P
Sbjct: 62 HWNA--VKVLP 70


>gi|311899342|dbj|BAJ31750.1| hypothetical protein KSE_59800 [Kitasatospora setae KM-6054]
          Length = 344

 Score = 56.9 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 10/75 (13%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59
           +  G +  ++  +GYGFI P+   + G+DVFLH +   +  + +     G  V ++    
Sbjct: 211 MVAGRVVRFDGSRGYGFIAPD---QGGEDVFLHVNDLLIPESYIRT---GLSVVFEIEDG 264

Query: 60  DANGKYSAENLKLVP 74
           D   K  A +++L P
Sbjct: 265 DRGPK--ASSVQLAP 277


>gi|295425124|ref|ZP_06817829.1| cold-shock protein [Lactobacillus amylolyticus DSM 11664]
 gi|295065183|gb|EFG56086.1| cold-shock protein [Lactobacillus amylolyticus DSM 11664]
          Length = 68

 Score = 56.9 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K ++    YGFIT E + +S    F+  +A+   G   L  GQ V Y   Q   
Sbjct: 1  MRLGTVKQFDEGSSYGFITDEQNHKS---YFVFYTAIKEEGYKRLEVGQRVKYQLAQGKN 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|72388354|ref|XP_844601.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62360097|gb|AAX80518.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70801134|gb|AAZ11042.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 504

 Score = 56.9 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 38/112 (33%)

Query: 3   HRGSIKWYNPDKGYGFITP-----------------EGSTESGD---------------- 29
           + G +K YNP +G+GF+T                  +G+ +                   
Sbjct: 214 YEGIVKRYNPMRGFGFLTATHHLQVTSPSGGSGTFSDGNADGRSQQQQQTTPPQPTLERT 273

Query: 30  -----DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
                DVF+H+S +   G   L+ G  V +   +        A +++L+  +
Sbjct: 274 PVAVGDVFVHQSYIRMHGFRALSAGDRVAFRVGKLPGKDANQAVSVQLLATA 325


>gi|229085309|ref|ZP_04217551.1| Cold-shock DNA-binding domain protein [Bacillus cereus Rock3-44]
 gi|228698028|gb|EEL50771.1| Cold-shock DNA-binding domain protein [Bacillus cereus Rock3-44]
          Length = 83

 Score = 56.9 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA------SAGLFNLTEGQLVTYDY 56
          + G ++W+  ++GYG I  + + E    VF+H S++A         +  L++GQ V++D 
Sbjct: 5  YEGIVEWFKKEEGYGSILLDRNKEEP--VFVHFSSIAPDLDRFPDNVRYLSKGQRVSFDL 62

Query: 57 VQNDANGKYS--AENLKLV 73
          ++     + S  A N+ ++
Sbjct: 63 IEIPGLSEQSKTASNVVIL 81


>gi|322500418|emb|CBZ35495.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 143

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
          +++ G +  +   +G+GFI            F+H SA+ +   G   L   Q V ++   
Sbjct: 16 LLNTGKVVSWMSGRGFGFIEDNADKRQH---FVHFSALQTETGGYRALAVDQEVEFEVA- 71

Query: 59 NDANGKYSAENLK 71
             +G+  AEN+ 
Sbjct: 72 -SQDGRTRAENVT 83


>gi|227877332|ref|ZP_03995405.1| cold-shock protein [Lactobacillus crispatus JV-V01]
 gi|227863188|gb|EEJ70634.1| cold-shock protein [Lactobacillus crispatus JV-V01]
          Length = 67

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K ++    YGFI  + + +S    F+   A+   G   L  GQ V Y   Q   
Sbjct: 1  MRLGTVKQFDEGSSYGFIEDDRNHKS---YFVFYKAIKEEGYKTLQIGQRVKYQLAQGKN 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|327402091|ref|YP_004342929.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
           16823]
 gi|327317599|gb|AEA42091.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
           16823]
          Length = 148

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 8/65 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + +G++ +YN  KGYGFI     + SGD +F+H + +       +TEG  V+++ V+   
Sbjct: 86  IRQGTVTFYNDSKGYGFI---KDSTSGDSIFVHANQLT----ETITEGNRVSFE-VEKGQ 137

Query: 62  NGKYS 66
            G  +
Sbjct: 138 RGPTA 142


>gi|157871626|ref|XP_001684362.1| RNA binding protein rbp16 [Leishmania major strain Friedlin]
 gi|68127431|emb|CAJ05173.1| putative RNA binding protein rbp16 [Leishmania major strain
          Friedlin]
          Length = 142

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
          +++ G +  +   +G+GFI      +     F+H SA+ +   G   L   Q V ++   
Sbjct: 16 LLNTGKVVSWMSGRGFGFIEDNADKKQH---FVHFSALQTETGGYRALAVDQEVEFEVA- 71

Query: 59 NDANGKYSAENLK 71
             +G+  AEN+ 
Sbjct: 72 -SQDGRTRAENVT 83


>gi|300709511|ref|YP_003735325.1| cold shock protein [Halalkalicoccus jeotgali B3]
 gi|299123194|gb|ADJ13533.1| cold shock protein [Halalkalicoccus jeotgali B3]
          Length = 64

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G + ++N   GYGFI+ + + +   DVF H   V   G  +L EGQ + +D  Q   
Sbjct: 1  MAKGEVDFFNDTGGYGFISTDDADD---DVFFHMEDV---GGPDLEEGQEIEFDIEQAPK 54

Query: 62 NGKYSAENLKLV 73
            +  A N+  +
Sbjct: 55 GPR--ATNVTRL 64


>gi|117164652|emb|CAJ88198.1| putative DNA-binding protein [Streptomyces ambofaciens ATCC
          23877]
          Length = 172

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G I  ++  +GYGFI P+     G+DVF+H + +A      L  G  V +D  + D   K
Sbjct: 9  GKIIRFDEFRGYGFIAPD---NGGEDVFIHVNDLAFDK-RLLGPGMKVEFDVEEGDRGLK 64

Query: 65 YSAENLK 71
           S   ++
Sbjct: 65 ASRVRIQ 71


>gi|146091785|ref|XP_001470120.1| RNA binding protein rbp16 [Leishmania infantum]
 gi|134084914|emb|CAM69312.1| putative RNA binding protein rbp16 [Leishmania infantum JPCM5]
          Length = 143

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
          +++ G +  +   +G+GFI            F+H SA+ +   G   L   Q V ++   
Sbjct: 16 LLNTGKVVSWMSGRGFGFIEDNADKRQH---FVHFSALQTETGGYRALAVDQEVEFEVA- 71

Query: 59 NDANGKYSAENLK 71
             +G+  AEN+ 
Sbjct: 72 -SQDGRTRAENVT 83


>gi|289581524|ref|YP_003479990.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
 gi|289531077|gb|ADD05428.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
          Length = 64

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ ++N   GYGFI+ + + +   DVF H   V   G  +L EGQ + +D  Q   
Sbjct: 1  MANGNVDFFNDTGGYGFISTDDADD---DVFFHMEDV---GGPDLEEGQDIEFDIEQA-P 53

Query: 62 NGKYSAENLK 71
           G  +   ++
Sbjct: 54 KGPRATNVVR 63


>gi|212697052|ref|ZP_03305180.1| hypothetical protein ANHYDRO_01617 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212675827|gb|EEB35434.1| hypothetical protein ANHYDRO_01617 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 68

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
           G +K+++  KG+GFI  E       D F H S + S      +  G  V +D       
Sbjct: 2  EGKVKFFDEKKGFGFIESESG-----DYFFHYSEIISDKDYKTIENGARVEFDVKDLGRG 56

Query: 63 GKYSAENLK 71
             +A N+K
Sbjct: 57 --DTAFNVK 63


>gi|86145147|ref|ZP_01063478.1| hypothetical protein MED222_04500 [Vibrio sp. MED222]
 gi|85836724|gb|EAQ54844.1| hypothetical protein MED222_04500 [Vibrio sp. MED222]
          Length = 84

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          RG I W++ + G+GF  P+       DV +H S +   G  N+ EGQ V  +  +    G
Sbjct: 8  RGYITWFHLENGFGFAKPDHGDI---DVLIHISVIEFDGEINVEEGQRVYMELEE--VKG 62

Query: 64 KYSAENLKLVP 74
          K     +K++P
Sbjct: 63 KPHWNAVKVLP 73


>gi|322501459|emb|CBZ36538.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 535

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 46/118 (38%)

Query: 2   VHRGSIKWYNPDKGYGFITP--------EGSTESG------------------------- 28
           ++ G +K YNP++G+GF+T         +GS                             
Sbjct: 334 LYEGFVKRYNPNRGFGFLTATAHVTMVNDGSNSDSVTGTPIASLNATTTAVPTTREAETP 393

Query: 29  ---------DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY--SAENLKLVPK 75
                     D+F+H+S++   G   L  G  V +       +G+    A +++L+P+
Sbjct: 394 KEHRTPVHLGDIFVHQSSMQMEGFRTLPVGGRVRFRI--GYKDGQQTLQAVSVELLPQ 449


>gi|146094941|ref|XP_001467429.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134071794|emb|CAM70487.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 535

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 46/118 (38%)

Query: 2   VHRGSIKWYNPDKGYGFITP--------EGSTESG------------------------- 28
           ++ G +K YNP++G+GF+T         +GS                             
Sbjct: 334 LYEGFVKRYNPNRGFGFLTATAHVTMANDGSNSDSVTGTPIASLNATTTAVPTTREAETP 393

Query: 29  ---------DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY--SAENLKLVPK 75
                     D+F+H+S++   G   L  G  V +       +G+    A +++L+P+
Sbjct: 394 KEHRTPVHLGDIFVHQSSMQMEGFRTLPVGGRVRFRI--GYKDGQQTLQAVSVELLPQ 449


>gi|257386410|ref|YP_003176183.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
 gi|257168717|gb|ACV46476.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
          Length = 64

 Score = 56.1 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ ++N   GYGFI  E + +   DVF H   V   G  +L EG  V +D  Q D 
Sbjct: 1  MANGTVDFFNDTGGYGFIETEDADD---DVFFHMEDV---GGPDLEEGTDVEFDIEQAD- 53

Query: 62 NGKYSAENLK 71
           G  +   ++
Sbjct: 54 KGPRATNVVR 63


>gi|195428158|ref|XP_002062141.1| GK16809 [Drosophila willistoni]
 gi|194158226|gb|EDW73127.1| GK16809 [Drosophila willistoni]
          Length = 143

 Score = 56.1 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G +K ++  KG+GFITP+     G+DVF H S +     +    G  V Y       
Sbjct: 54  MVTGVVKSFSRTKGHGFITPQA---GGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPP 108

Query: 62  N-GKYSAENLKL 72
              K+ A ++++
Sbjct: 109 KYEKHQAVHVQI 120


>gi|330448523|ref|ZP_08312171.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492714|dbj|GAA06668.1| 'Cold-shock' DNA-binding domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
          Length = 204

 Score = 56.1 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59
          M  +G I  +N  KG+GFI+P+     GDDVF H SA+A       + E   V +     
Sbjct: 1  MTQKGKIISWNQQKGFGFISPD---NGGDDVFFHVSALADKQSRPRIQE--PVNFKLG-T 54

Query: 60 DANGKYSAENLKLV 73
          D+ G+ SA  +  V
Sbjct: 55 DSKGRLSASKVTFV 68


>gi|194750622|ref|XP_001957629.1| GF23931 [Drosophila ananassae]
 gi|190624911|gb|EDV40435.1| GF23931 [Drosophila ananassae]
          Length = 142

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G +K ++  KG+GFITP   +  G+DVF H S +     +    G  V Y       
Sbjct: 54  MVTGVVKSFSRTKGHGFITP---SAGGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPP 108

Query: 62  N-GKYSAENLKL 72
              K+ A ++++
Sbjct: 109 KYEKHQAVHVQI 120


>gi|327404743|ref|YP_004345581.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
          16823]
 gi|327320251|gb|AEA44743.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM
          16823]
          Length = 63

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 9/70 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G+IK++N  KG+GF+  +   E+  + F+H S +    +  + E   VT+D  +   
Sbjct: 1  MNKGTIKFFNETKGFGFVKED---ETNKEYFVHVSGL----VDKVNENDAVTFDLEEGRK 53

Query: 62 NGKYSAENLK 71
               A N+K
Sbjct: 54 G--LMAVNVK 61


>gi|154342412|ref|XP_001567154.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134064483|emb|CAM42577.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 525

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 43/115 (37%)

Query: 2   VHRGSIKWYNPDKGYGFIT------------------------------PEGSTESGD-- 29
           V+ G +K YNP++G+GF+T                              P    E+ +  
Sbjct: 331 VYEGFVKRYNPNRGFGFLTATTHVTVSANGDSATGTPPTSLSAPATAVPPTAEAEAPEKR 390

Query: 30  -------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY--SAENLKLVPK 75
                  D+F+H+S++   G   L  G  V +       +G+    A +++L+P+
Sbjct: 391 RTPVHLGDIFVHQSSMQMEGFRALPVGGRVRFRI--GYKDGQQTLQAVDVELLPQ 443


>gi|195127535|ref|XP_002008224.1| GI13370 [Drosophila mojavensis]
 gi|193919833|gb|EDW18700.1| GI13370 [Drosophila mojavensis]
          Length = 142

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G +K ++  KG+GFITP    + G+DVF H S +     +    G  V Y       
Sbjct: 54  MVAGVVKSFSRTKGHGFITPH---DGGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPP 108

Query: 62  N-GKYSAENLKL 72
              K+ A ++++
Sbjct: 109 KFEKHQAVHVQI 120


>gi|87307223|ref|ZP_01089368.1| probable cold shock protein scoF [Blastopirellula marina DSM
          3645]
 gi|87289963|gb|EAQ81852.1| probable cold shock protein scoF [Blastopirellula marina DSM
          3645]
          Length = 68

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G IK    DKG+GFI     T S  D+F H S++      +L EGQ V+Y   Q  
Sbjct: 3  LMPEGKIKRL-TDKGFGFI----DTGSNKDLFFHMSSLEGCRYDDLREGQTVSYVEGQGP 57

Query: 61 ANGKYSAENLKLV 73
             +  AE ++++
Sbjct: 58 KGPR--AEQVQVI 68


>gi|238752131|ref|ZP_04613613.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380]
 gi|238709604|gb|EEQ01840.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380]
          Length = 41

 Score = 56.1 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          F+H SA+ S     L EGQ V +   ++ A G  +   + L
Sbjct: 2  FVHFSAIQSNDFKTLDEGQKVEFSI-ESGAKGPAAVNVIAL 41


>gi|327280107|ref|XP_003224795.1| PREDICTED: calcium-regulated heat stable protein 1-like [Anolis
          carolinensis]
          Length = 149

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
          ++G  K ++  KG+GFITPE   E G DVF+H S +   
Sbjct: 63 YKGVCKCFSRAKGHGFITPE---EGGLDVFVHISDIEGE 98


>gi|322493163|emb|CBZ28448.1| putative RNA binding protein rbp16 [Leishmania mexicana
          MHOM/GT/2001/U1103]
          Length = 142

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58
          +++ G +  +   +G+GFI            F+H SA+ +   G   L   Q V ++   
Sbjct: 16 LLNTGKVVSWMSGRGFGFIEDNADKRQH---FVHFSALQTETGGYRALAVDQEVEFEVA- 71

Query: 59 NDANGKYSAENLK 71
             +G+  AEN+ 
Sbjct: 72 -SQDGRTRAENVT 83


>gi|119776235|ref|YP_928975.1| cold-shock DNA-binding domain-containing protein [Shewanella
          amazonensis SB2B]
 gi|119768735|gb|ABM01306.1| cold-shock DNA-binding protein family [Shewanella amazonensis
          SB2B]
          Length = 186

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
          + RG +  +N ++G+GFI PE   +  DDVF+H S++   +       G ++ +   Q  
Sbjct: 1  MQRGKLIRWNDERGFGFIKPE--QDGADDVFIHISSLKQMS--RAPRIGDIIVFQL-QTS 55

Query: 61 ANGKYSA 67
          ++GK  A
Sbjct: 56 SDGKQQA 62


>gi|209735380|gb|ACI68559.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|209738580|gb|ACI70159.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
          Length = 111

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
          G++KW+N   GYGFI      ++ +DVF+H++A+   
Sbjct: 41 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKN 74


>gi|288961931|ref|YP_003452241.1| cold-shock DNA-binding domain protein [Azospirillum sp. B510]
 gi|288914211|dbj|BAI75697.1| cold-shock DNA-binding domain protein [Azospirillum sp. B510]
          Length = 204

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            ++KW+ P+KG+GF+      +   + FLH S +A+A L N  EG  V  D  Q     
Sbjct: 10 TATVKWFKPEKGFGFV---RLADGSGEAFLHASVLAAASLPNPVEGTTVVCDLAQGAKGP 66

Query: 64 KYSA 67
          +  A
Sbjct: 67 QVVA 70



 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G+++WYN D   G I P    E G  V+  R+ +  +GL  + +G+ V Y  V ++ 
Sbjct: 138 MAYGTVRWYNLDSQSGLIEP---WEDGATVYFDRATLRQSGLDIVADGEDVRYLAVGSED 194

Query: 62  NGKYSAENLKLV 73
                A+ ++L+
Sbjct: 195 A--PVAQRVELI 204


>gi|317419174|emb|CBN81211.1| Cold shock domain-containing protein C2 [Dicentrarchus labrax]
          Length = 157

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFI P   +  G+D+F+H S +     +   EG  VTY        N
Sbjct: 74  KGVCKNFSRSQGHGFIRP---SHGGEDIFVHISDIEGE--YVPMEGDEVTYKVCPIPPKN 128

Query: 63  GKYSAENLKL 72
            K  A ++ +
Sbjct: 129 QKIQAVDVVI 138


>gi|330867693|gb|EGH02402.1| cold shock protein CapA [Pseudomonas syringae pv. aesculi str.
          0893_23]
 gi|330876782|gb|EGH10931.1| cold shock protein CapA [Pseudomonas syringae pv. morsprunorum
          str. M302280PT]
 gi|330883225|gb|EGH17374.1| cold shock protein CapA [Pseudomonas syringae pv. glycinea str.
          race 4]
 gi|330958900|gb|EGH59160.1| cold shock protein CapA [Pseudomonas syringae pv. maculicola str.
          ES4326]
 gi|330967300|gb|EGH67560.1| cold shock protein CapA [Pseudomonas syringae pv. actinidiae str.
          M302091]
 gi|330989243|gb|EGH87346.1| cold shock protein CapA [Pseudomonas syringae pv. lachrymans str.
          M301315]
 gi|331010504|gb|EGH90560.1| cold shock protein CapA [Pseudomonas syringae pv. tabaci ATCC
          11528]
          Length = 46

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
           GDD+F+H  A+ S G  +L EGQ V++   +        AE +++
Sbjct: 2  GGDDLFVHFKAIESDGFKSLKEGQTVSFVAAKGQKG--MQAEQVRV 45


>gi|182678527|ref|YP_001832673.1| cold-shock DNA-binding domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634410|gb|ACB95184.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 205

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            +KW+N  KG+GF++     +  +D+F+H   +   G+  L  G+ +   + Q    
Sbjct: 135 KVKWFNRVKGFGFLSR---GDGTEDIFVHMEILRRHGISILHPGEELRARFGQGPKG 188



 Score = 54.2 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G IKW++  KGYGF+  +       DV LH +A+   G     EG  V  + ++    
Sbjct: 35 GRIKWFDLVKGYGFVVAD---NGLGDVLLHVTALRKDGHSKACEGARVVCEAMRGTKG 89


>gi|145284606|gb|ABP52050.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 27

 Score = 55.7 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KG+GFI PE     GDDVF+H
Sbjct: 1  GRVKWFNNAKGFGFICPES---GGDDVFVH 27


>gi|288941832|ref|YP_003444072.1| cold-shock DNA-binding domain-containing protein [Allochromatium
          vinosum DSM 180]
 gi|288897204|gb|ADC63040.1| cold-shock DNA-binding domain protein [Allochromatium vinosum DSM
          180]
          Length = 264

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)

Query: 2  VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
          +  G+ ++W +  KG+GFI P    + G DVF+H SA+  
Sbjct: 10 LREGTLVRW-DDAKGFGFIRP---NDGGKDVFVHISALPM 45


>gi|224070003|ref|XP_002194726.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 152

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           +++G  K +   KG+GFITP    + G D+F+H S +     +    G  VTY       
Sbjct: 67  IYKGVCKCFCRSKGHGFITP---ADGGPDIFVHISDIEGE--YVPVAGDEVTYKMCTIPP 121

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 122 KNEKLQAVEVVI 133


>gi|114046090|ref|YP_736640.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-7]
 gi|113887532|gb|ABI41583.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7]
          Length = 197

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 2  VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + RG  ++W N +KG+GFI PE S   G DVF+H + +       L  G  + Y   +  
Sbjct: 1  MERGILVRW-NDEKGFGFIQPEDSK--GKDVFIHITVLKHMARKPLV-GDSILYR-TEIQ 55

Query: 61 ANGKYSA 67
           +GK  A
Sbjct: 56 NDGKVKA 62


>gi|85703578|ref|ZP_01034682.1| cold shock DNA-binding domain protein [Roseovarius sp. 217]
 gi|85672506|gb|EAQ27363.1| cold shock DNA-binding domain protein [Roseovarius sp. 217]
          Length = 151

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G  E   DVF+H   +  +GL ++  G+ +    + +   G+ 
Sbjct: 81  RVKWFDKGKGFGFANTFGREE---DVFVHVEVLRRSGLADVQPGEALAIRVI-DGKRGRM 136

Query: 66  SAEN 69
           + E 
Sbjct: 137 ATEV 140


>gi|109898941|ref|YP_662196.1| cold-shock DNA-binding domain-containing protein
          [Pseudoalteromonas atlantica T6c]
 gi|109701222|gb|ABG41142.1| cold-shock DNA-binding domain protein [Pseudoalteromonas
          atlantica T6c]
          Length = 237

 Score = 55.3 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +  +N DKG+GF+ P G    G+ VF+H  A          +G ++TY+ V+  
Sbjct: 1  MRFQGKVFNWNDDKGFGFVEPNG---GGERVFVHIKAFTPRSRR-PVDGDVITYELVRES 56

Query: 61 ANGKYSAENLK 71
           N +  AEN++
Sbjct: 57 HN-RCKAENIQ 66


>gi|50540448|ref|NP_001002690.1| cold shock domain-containing protein C2 [Danio rerio]
 gi|49903205|gb|AAH76447.1| Cold shock domain containing C2, RNA binding [Danio rerio]
 gi|182891632|gb|AAI64903.1| Csdc2 protein [Danio rerio]
          Length = 153

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V++G  K ++  +G+GFI P   +  G+D+F+H S +     +   EG  VTY       
Sbjct: 68  VYKGICKNFSRSQGHGFIRP---SHGGEDIFVHISDIEGE--YVPMEGDEVTYKVCPVPP 122

Query: 62  NG-KYSAENLKLVPKSS 77
              K+ A  + +   SS
Sbjct: 123 KNIKFQAVEVVITNLSS 139


>gi|212636761|ref|YP_002313286.1| hypothetical protein swp_4029 [Shewanella piezotolerans WP3]
 gi|212558245|gb|ACJ30699.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 251

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 1  MVHRG-SIKWYNPDKGYGFI--TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          M+ +G  ++W N  KGYGFI    +GS ++  DVF+H SA+   G      G +V +   
Sbjct: 1  MIKKGQIVRW-NDSKGYGFIRCEVQGSEQATQDVFMHMSALEPMGRR-PQVGDVVDFQI- 57

Query: 58 QNDANGKYSA 67
          +  A+GK  A
Sbjct: 58 EVQADGKQRA 67


>gi|28201200|dbj|BAC56735.1| cold shock protein [Janthinobacterium sp. J3]
          Length = 174

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +  +N ++G+GFI   G++E     FLH SA+       L  G LVTY+  + D
Sbjct: 1  MRLQGRVIEWNDERGFGFIIQNGTSERT---FLHISALRKTKGRPLL-GSLVTYEI-RRD 55

Query: 61 ANGKYSAENLKLVPKSS 77
            G+  A   +L+   S
Sbjct: 56 DKGRLQAVAAELIGTKS 72


>gi|315038058|ref|YP_004031626.1| cold shock protein [Lactobacillus amylovorus GRL 1112]
 gi|325956510|ref|YP_004291922.1| cold shock protein [Lactobacillus acidophilus 30SC]
 gi|312276191|gb|ADQ58831.1| cold shock protein [Lactobacillus amylovorus GRL 1112]
 gi|325333075|gb|ADZ06983.1| cold shock protein [Lactobacillus acidophilus 30SC]
 gi|327183338|gb|AEA31785.1| cold shock protein [Lactobacillus amylovorus GRL 1118]
          Length = 67

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K ++    YGFI  + + +S    F+   A+   G   L  G  V Y   Q   
Sbjct: 1  MRLGTVKQFDDGSSYGFIEDDKNHKS---YFVFYKAIKEEGYKTLKVGDRVKYQLAQGKN 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|55379499|ref|YP_137349.1| cold shock protein [Haloarcula marismortui ATCC 43049]
 gi|55232224|gb|AAV47643.1| cold shock protein [Haloarcula marismortui ATCC 43049]
          Length = 64

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G + ++N   GYGFI+ E + +   DVF H   V   G  +L EG+ + +D  Q D 
Sbjct: 1  MANGKVDFFNDTGGYGFISTEDADD---DVFFHMEDV---GGPDLEEGEEIEFDIEQAD- 53

Query: 62 NGKYSAENLK 71
           G  +   ++
Sbjct: 54 KGPRATNVVR 63


>gi|16125636|ref|NP_420200.1| cold-shock domain-contain protein [Caulobacter crescentus CB15]
 gi|13422744|gb|AAK23368.1| cold-shock domain family protein [Caulobacter crescentus CB15]
          Length = 64

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW+N  KGYGF+  +       D+F+H   +   GL +L  G  V   + +    G   
Sbjct: 1  MKWFNRTKGYGFVIRDAEP---GDIFVHIETLRRGGLEDLQPGDDVLVRFARG-PKGLVV 56

Query: 67 AE 68
          AE
Sbjct: 57 AE 58


>gi|161507323|ref|YP_001577277.1| cold shock protein [Lactobacillus helveticus DPC 4571]
 gi|260102620|ref|ZP_05752857.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
 gi|160348312|gb|ABX26986.1| Cold shock protein [Lactobacillus helveticus DPC 4571]
 gi|260083574|gb|EEW67694.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
 gi|323466795|gb|ADX70482.1| Cold shock protein [Lactobacillus helveticus H10]
 gi|328468654|gb|EGF39648.1| cold shock protein [Lactobacillus helveticus MTCC 5463]
          Length = 67

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K ++    YGFI  + + +S    F+   A+   G  +L  G  V Y   Q   
Sbjct: 1  MRLGTVKQFDEGSSYGFIEDDRNHKS---YFVFYKAIKEEGYKSLRVGDRVQYQLAQGKN 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|37520057|ref|NP_923434.1| hypothetical protein gsr0488 [Gloeobacter violaceus PCC 7421]
 gi|35211049|dbj|BAC88429.1| gsr0488 [Gloeobacter violaceus PCC 7421]
          Length = 65

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          ++W++   GYG I  +   ++G++VFL  +A+   G   +     V ++  Q  +     
Sbjct: 2  VRWFDLQAGYGAIARD---DTGEEVFLLFTAIPGEGYRTIAPSTAVHFELAQGPSG--PV 56

Query: 67 AENLK 71
          A N++
Sbjct: 57 ARNVQ 61


>gi|259501538|ref|ZP_05744440.1| cold shock domain family protein [Lactobacillus iners DSM 13335]
 gi|302191488|ref|ZP_07267742.1| cold shock protein [Lactobacillus iners AB-1]
 gi|309804239|ref|ZP_07698316.1| cold shock-like protein CspG [Lactobacillus iners LactinV 11V1-d]
 gi|309805465|ref|ZP_07699510.1| cold shock-like protein CspG [Lactobacillus iners LactinV 09V1-c]
 gi|309806572|ref|ZP_07700572.1| cold shock-like protein CspG [Lactobacillus iners LactinV 03V1-b]
 gi|309808598|ref|ZP_07702490.1| cold shock-like protein CspG [Lactobacillus iners LactinV 01V1-a]
 gi|309809513|ref|ZP_07703371.1| cold shock-like protein CspG [Lactobacillus iners SPIN 2503V10-D]
 gi|312871855|ref|ZP_07731939.1| cold shock-like protein CspG [Lactobacillus iners LEAF 3008A-a]
 gi|312872457|ref|ZP_07732526.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2062A-h1]
 gi|312874456|ref|ZP_07734486.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2052A-d]
 gi|312874558|ref|ZP_07734583.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2053A-b]
 gi|315653382|ref|ZP_07906304.1| cold shock domain family protein [Lactobacillus iners ATCC 55195]
 gi|325911790|ref|ZP_08174194.1| cold shock-like protein CspG [Lactobacillus iners UPII 143-D]
 gi|325913429|ref|ZP_08175795.1| cold shock-like protein CspG [Lactobacillus iners UPII 60-B]
 gi|329921167|ref|ZP_08277689.1| cold shock-like protein CspG [Lactobacillus iners SPIN 1401G]
 gi|259167056|gb|EEW51551.1| cold shock domain family protein [Lactobacillus iners DSM 13335]
 gi|308163642|gb|EFO65912.1| cold shock-like protein CspG [Lactobacillus iners LactinV 11V1-d]
 gi|308165116|gb|EFO67354.1| cold shock-like protein CspG [Lactobacillus iners LactinV 09V1-c]
 gi|308167051|gb|EFO69230.1| cold shock-like protein CspG [Lactobacillus iners LactinV 03V1-b]
 gi|308168072|gb|EFO70198.1| cold shock-like protein CspG [Lactobacillus iners LactinV 01V1-a]
 gi|308170185|gb|EFO72220.1| cold shock-like protein CspG [Lactobacillus iners SPIN 2503V10-D]
 gi|311089949|gb|EFQ48368.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2053A-b]
 gi|311090068|gb|EFQ48482.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2052A-d]
 gi|311092039|gb|EFQ50414.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2062A-h1]
 gi|311092577|gb|EFQ50937.1| cold shock-like protein CspG [Lactobacillus iners LEAF 3008A-a]
 gi|315489307|gb|EFU78947.1| cold shock domain family protein [Lactobacillus iners ATCC 55195]
 gi|325476296|gb|EGC79458.1| cold shock-like protein CspG [Lactobacillus iners UPII 143-D]
 gi|325477198|gb|EGC80344.1| cold shock-like protein CspG [Lactobacillus iners UPII 60-B]
 gi|328934805|gb|EGG31296.1| cold shock-like protein CspG [Lactobacillus iners SPIN 1401G]
          Length = 72

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K ++    YGFI  + +   G   F+   ++  +G   L  GQ V Y   Q   
Sbjct: 1  MRTGIVKQFDSRSPYGFIEDDLT---GASYFVFYKSIKESGYKRLEVGQRVRYQLAQGKK 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|32473251|ref|NP_866245.1| cold shock protein scoF [Rhodopirellula baltica SH 1]
 gi|32397930|emb|CAD73931.1| probable cold shock protein scoF [Rhodopirellula baltica SH 1]
 gi|327540425|gb|EGF27010.1| Cold shock, CspA [Rhodopirellula baltica WH47]
          Length = 65

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G+IK    DKG+GFI     T    D+F H + V  A    L EGQ VTY   +   
Sbjct: 1  MAEGTIKRL-TDKGFGFI----DTGGPKDLFFHCTNVEGASYDELQEGQKVTY--TEGRG 53

Query: 62 NGKYSAENLK 71
               AEN+ 
Sbjct: 54 PKGPCAENVT 63


>gi|86740653|ref|YP_481053.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3]
 gi|86567515|gb|ABD11324.1| cold-shock DNA-binding protein family [Frankia sp. CcI3]
          Length = 141

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 7/78 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT-EGQLVTYDYVQND 60
          +  G +  ++  +GYGFI P   ++ GDD+FLH + +      NL   G ++ ++  + +
Sbjct: 1  MSTGKVLRFDHVRGYGFIAP---SDGGDDIFLHANDLLVE--KNLVIPGAVMEFEIEEGE 55

Query: 61 ANGK-YSAENLKLVPKSS 77
             K  +A  L+  P +S
Sbjct: 56 RGLKASAARILRSAPAAS 73


>gi|296140435|ref|YP_003647678.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
          DSM 20162]
 gi|296028569|gb|ADG79339.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
          DSM 20162]
          Length = 152

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +  ++  +G+GF+ P    + G+DVFLH + +       L  G  VT+D  + D 
Sbjct: 1  MTSGKVVHFDTQRGFGFLAP---ADGGEDVFLHVNDIDFD-ESALRPGTEVTFDVEKGDK 56

Query: 62 NGKYSAEN 69
               A N
Sbjct: 57 G--LKAVN 62


>gi|17547421|ref|NP_520823.1| cold shock-like transcription regulator protein [Ralstonia
          solanacearum GMI1000]
 gi|17429724|emb|CAD16409.1| probable cold shock-like transcription regulator protein
          [Ralstonia solanacearum GMI1000]
          Length = 54

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 20 TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
            +     G+D+F H S +   G+ +L EGQ V Y  V    NG  +
Sbjct: 3  CNDSPDTGGNDLFAHFSEIQGNGVKSLQEGQKVHY-VVGVGQNGPTA 48


>gi|307823633|ref|ZP_07653862.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307735618|gb|EFO06466.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 107

 Score = 55.0 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +K +  D+G+GFI+P+   + G D+F+H SA+       +T G ++ Y   +++ 
Sbjct: 1  MIKGVLKTWKEDRGFGFISPD---DGGKDIFIHISALKGTSRRPVT-GDVIYYQVARDN- 55

Query: 62 NGKYSAEN 69
           GKY A N
Sbjct: 56 RGKYKAIN 63


>gi|154147690|ref|NP_001093718.1| cold shock domain containing C2, RNA binding [Xenopus (Silurana)
           tropicalis]
 gi|134025813|gb|AAI35982.1| csdc2 protein [Xenopus (Silurana) tropicalis]
          Length = 151

 Score = 55.0 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           +++G  K ++  +G+GFITPE  TE   D+F+H S +     +   EG  VT+       
Sbjct: 66  IYKGVCKQFSRSQGHGFITPENGTE---DIFVHISDIEGE--YVPVEGDEVTFKMCPIPP 120

Query: 61  ANGKYSAENL 70
            N K+ A  +
Sbjct: 121 KNQKFQAVEV 130


>gi|313125894|ref|YP_004036164.1| cold-shock DNA-binding protein family [Halogeometricum
          borinquense DSM 11551]
 gi|312292259|gb|ADQ66719.1| cold-shock DNA-binding protein family [Halogeometricum
          borinquense DSM 11551]
          Length = 64

 Score = 55.0 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 7/71 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI+ + + +   DVF H   +   G  +L EG  V ++  ++  
Sbjct: 1  MAKGNVDFFNDTGGYGFISTDDADD---DVFFHMEDI---GGEDLEEGTDVEFEI-EDAP 53

Query: 62 NGKYSAENLKL 72
           G  +    +L
Sbjct: 54 KGPRATNLTRL 64


>gi|289581096|ref|YP_003479562.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
 gi|289530649|gb|ADD05000.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC
          43099]
          Length = 64

 Score = 55.0 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ ++N   GYGFI  E + +   DVF H   V   G  +LTEG  + +D  Q   
Sbjct: 1  MANGTVDFFNDTGGYGFIETEDADD---DVFFHMEDV---GGEDLTEGTEIEFDIEQA-P 53

Query: 62 NGKYSAENLK 71
           G  +   ++
Sbjct: 54 KGPRATNVVR 63


>gi|195014627|ref|XP_001984048.1| GH16224 [Drosophila grimshawi]
 gi|193897530|gb|EDV96396.1| GH16224 [Drosophila grimshawi]
          Length = 142

 Score = 55.0 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           G +K ++  KG+GFITP G    G+DVF H S +     +   EG  V Y
Sbjct: 57  GVVKSFSRTKGHGFITPNG---GGEDVFCHVSDIEGE--YVPMEGDEVKY 101


>gi|227893345|ref|ZP_04011150.1| cold-shock protein [Lactobacillus ultunensis DSM 16047]
 gi|227864760|gb|EEJ72181.1| cold-shock protein [Lactobacillus ultunensis DSM 16047]
          Length = 67

 Score = 55.0 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K ++    YGFI  + + +S    F+   A+   G   L  G  V Y   Q   
Sbjct: 1  MRLGTVKQFDEGSSYGFIEDDQNHKS---YFVFYKAIKEEGYKTLRVGDRVKYQLAQGKN 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|257387381|ref|YP_003177154.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
 gi|257169688|gb|ACV47447.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei
          DSM 12286]
          Length = 64

 Score = 55.0 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ ++N   GYGFI  E + +   DVF H   V   G  +L EG  V +D  Q D 
Sbjct: 1  MANGTVDFFNDTGGYGFIETEDADD---DVFFHMEDV---GGPDLEEGTDVDFDIEQAD- 53

Query: 62 NGKYSAENLK 71
           G  +   ++
Sbjct: 54 KGPRATNVVR 63


>gi|316967791|gb|EFV52174.1| DNA-binding protein A [Trichinella spiralis]
          Length = 377

 Score = 55.0 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 54/116 (46%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHR--------------SAVASAG------- 42
           +G +KW+N   GYGFI      ++G+D+F+H+              +A+   G       
Sbjct: 122 KGKVKWFNVKNGYGFI---NRLDTGEDIFVHQVSCSSESLFVCRRRNALVRLGLPAGDGT 178

Query: 43  -----------------------------LFNLTEGQLVTYDYVQNDANGKYSAEN 69
                                        L +L + ++V +D V + + G  +A  
Sbjct: 179 RCTGSAVWMVNKLGWANSTAIIKNNPNKFLRSLGDEEMVEFDVV-DGSKGPEAANV 233


>gi|149178825|ref|ZP_01857406.1| probable cold shock protein scoF [Planctomyces maris DSM 8797]
 gi|148842366|gb|EDL56748.1| probable cold shock protein scoF [Planctomyces maris DSM 8797]
          Length = 65

 Score = 55.0 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G+IK    +KG+GFI      +   D+F H S++       L EGQ V ++  ++D 
Sbjct: 1  MATGTIKKI-TEKGFGFI-----NDGQQDIFFHLSSLDGVTFDQLVEGQTVEFETEKSDR 54

Query: 62 N 62
           
Sbjct: 55 G 55


>gi|127511419|ref|YP_001092616.1| cold-shock DNA-binding domain-containing protein [Shewanella
          loihica PV-4]
 gi|126636714|gb|ABO22357.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4]
          Length = 205

 Score = 55.0 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 2  VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          + RG+ ++W N DKG+GFI P  +T +  DVF+H SA+       +  G  + Y   Q  
Sbjct: 1  MERGTLVRW-NDDKGFGFIKP--NTPNAQDVFIHISALKQMARKPVV-GDEIIYQS-QQQ 55

Query: 61 ANGKYSAE 68
          ++GK  A 
Sbjct: 56 SDGKIKAV 63


>gi|300115369|ref|YP_003761944.1| cold-shock DNA-binding domain-containing protein [Nitrosococcus
          watsonii C-113]
 gi|299541306|gb|ADJ29623.1| cold-shock DNA-binding domain protein [Nitrosococcus watsonii
          C-113]
          Length = 229

 Score = 55.0 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G I  +N +KGYGFI+P      GD VF H  A  + G      G  VT+     D
Sbjct: 1  MRMKGEIASWNDEKGYGFISP---MRGGDRVFAHIKAFVNRGRR-PAVGDAVTFSMS-TD 55

Query: 61 ANGKYSA 67
          A G++ A
Sbjct: 56 ARGRHCA 62


>gi|260752615|ref|YP_003225508.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283856365|ref|YP_162660.2| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|258551978|gb|ACV74924.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283775364|gb|AAV89549.2| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 189

 Score = 55.0 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
           ++KW+N  KGYGF+          D+F+H  A  +AG+     G
Sbjct: 123 TVKWFNRTKGYGFLIRNADQ---QDIFVHAEAFHAAGIKKFEAG 163



 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          ++  G +KW++  KG+GF+     ++   D+ +H S +   G   L EG  V
Sbjct: 26 ILITGYVKWFDIIKGFGFLI---GSKGEGDILIHFSLLQEYGKRFLPEGSWV 74


>gi|58337126|ref|YP_193711.1| cold-shock protein [Lactobacillus acidophilus NCFM]
 gi|227903701|ref|ZP_04021506.1| cold-shock protein [Lactobacillus acidophilus ATCC 4796]
 gi|58254443|gb|AAV42680.1| putative cold-shock protein [Lactobacillus acidophilus NCFM]
 gi|227868588|gb|EEJ76009.1| cold-shock protein [Lactobacillus acidophilus ATCC 4796]
          Length = 67

 Score = 55.0 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++K ++    YGFI  + + +S    F+   A+   G  +L  G  V Y   Q   
Sbjct: 1  MRLGTVKQFDDGSSYGFIEDDKNHKS---YFVFYKAIKEEGYKSLRVGDRVKYQLAQGKN 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|41056167|ref|NP_956856.1| calcium-regulated heat stable protein 1 [Danio rerio]
 gi|33989487|gb|AAH56576.1| Calcium regulated heat stable protein 1 [Danio rerio]
          Length = 155

 Score = 55.0 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDANG 63
           G  K ++  KG+GFITP   ++ G+D+F+H S +   G +   EG  V Y        + 
Sbjct: 73  GVCKCFSRSKGHGFITP---SDGGNDIFVHISDI--DGEYVPVEGDEVCYKICSIPPKHE 127

Query: 64  KYSAENLKL 72
           K  A  + +
Sbjct: 128 KIQAVEVTI 136


>gi|323452903|gb|EGB08776.1| hypothetical protein AURANDRAFT_63880 [Aureococcus anophagefferens]
          Length = 2082

 Score = 55.0 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +K ++  K YGFI  +   E    +F+H + V   G   L  G  VTY        G+
Sbjct: 243 GMVKSFD--KVYGFIAEDAGGE----MFVHIADVR--GRRELKRGDRVTYSVA--PFRGR 292

Query: 65  YSAENLKL 72
             A N+++
Sbjct: 293 PKAVNVEV 300


>gi|170045455|ref|XP_001850324.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167868493|gb|EDS31876.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 120

 Score = 55.0 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          +  G ++ ++  KG+GFI P      GDD+F+H S V       L  G  V+Y
Sbjct: 22 IEEGKVRSFSRSKGHGFIEP---ASGGDDIFVHISDVEGE-YVPL-PGDEVSY 69


>gi|301057017|gb|ADK54842.1| transcriptional regulator [uncultured soil bacterium]
          Length = 146

 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 8/78 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59
          +  G +  ++  +GYGFI P+     G+DVFLH +   +  + + +   G  V ++    
Sbjct: 1  MASGRVVRFDGARGYGFIAPDH---GGEDVFLHVNEMLIPESYVRS---GTAVEFEVEDG 54

Query: 60 DANGKYSAENLKLVPKSS 77
          D   K S+  L   P  +
Sbjct: 55 DRGLKASSVRLAEGPDGT 72


>gi|118098085|ref|XP_414938.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 152

 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           +++G  K +   KG+GFI+P    + G D+F+H S +     +    G  VTY       
Sbjct: 67  IYKGVCKCFCRSKGHGFISP---ADGGPDIFVHISDIEGE--YVPVSGDEVTYKVCTIPP 121

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 122 KNEKLQAVEVVI 133


>gi|241761855|ref|ZP_04759941.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373769|gb|EER63329.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 189

 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49
           ++KW+N  KGYGF+          D+F+H  A  +AG+     G
Sbjct: 123 TVKWFNRTKGYGFLIRNADQ---QDIFVHAEAFHAAGIKKFEAG 163



 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          ++  G +KW++  KG+GF+     ++   D+ +H S +   G   L EG  V
Sbjct: 26 ILITGYVKWFDIIKGFGFLI---GSKGEGDILIHFSLLQEYGKRFLPEGSWV 74


>gi|254453709|ref|ZP_05067146.1| cold shock DNA-binding domain protein [Octadecabacter antarcticus
          238]
 gi|198268115|gb|EDY92385.1| cold shock DNA-binding domain protein [Octadecabacter antarcticus
          238]
          Length = 177

 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V +G +KW++  KG+GFI    + E G D+ LH + + + G  ++ +   +     + + 
Sbjct: 10 VMKGHVKWFDAGKGFGFI---LAQEGGADILLHANVLRNFGQSSVADDTGIEVLVAETE- 65

Query: 62 NGKYSAENLKL 72
           G  + E L +
Sbjct: 66 RGLQAIEVLSI 76



 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G      D+F+H   +  AGL +L  G+ +    ++    G  
Sbjct: 107 RVKWFDKGKGFGFANVFGDD---ADIFVHVEVLRLAGLADLFPGEAIALRAMEG-KRGLM 162

Query: 66  SAENL 70
           +AE L
Sbjct: 163 AAEVL 167


>gi|256828357|ref|YP_003157085.1| cold-shock DNA-binding domain-containing protein
          [Desulfomicrobium baculatum DSM 4028]
 gi|256577533|gb|ACU88669.1| cold-shock DNA-binding domain protein [Desulfomicrobium baculatum
          DSM 4028]
          Length = 168

 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
           D+G+GFITP G    G  VF+H SA+          G++VTY+   +   G   A N+ 
Sbjct: 12 DDRGFGFITPTG---GGTRVFVHISALQKG--RRPRAGEMVTYEVGNSGDKGPR-ALNVN 65

Query: 72 LV 73
           V
Sbjct: 66 FV 67


>gi|88855543|ref|ZP_01130207.1| hypothetical protein A20C1_01931 [marine actinobacterium PHSC20C1]
 gi|88815450|gb|EAR25308.1| hypothetical protein A20C1_01931 [marine actinobacterium PHSC20C1]
          Length = 246

 Score = 54.6 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           +N ++G+GFIT     ESGD +F H SA         L E   V++  V++ ++GK  A 
Sbjct: 45  WNDERGFGFIT----LESGDRIFAHISAFPPRDARPTLDE--RVSF-AVEHTSDGKVRAR 97

Query: 69  NLK 71
           N++
Sbjct: 98  NIR 100


>gi|87308022|ref|ZP_01090164.1| probable cold shock protein scoF [Blastopirellula marina DSM
          3645]
 gi|87289104|gb|EAQ80996.1| probable cold shock protein scoF [Blastopirellula marina DSM
          3645]
          Length = 65

 Score = 54.6 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G+IK    DKG+GFI    +T    D+F H  A+      +L EGQ VT+   Q   
Sbjct: 1  MADGTIKKL-TDKGFGFI----NTGGSKDLFFHSKALQGVSFDDLHEGQNVTFTEAQGPK 55

Query: 62 NGKYSAENLK 71
               AEN++
Sbjct: 56 G--PCAENVR 63


>gi|300858014|ref|YP_003782997.1| cold shock-like protein B [Corynebacterium pseudotuberculosis
          FRC41]
 gi|300685468|gb|ADK28390.1| cold shock-like protein B [Corynebacterium pseudotuberculosis
          FRC41]
 gi|302205739|gb|ADL10081.1| cold shock protein B [Corynebacterium pseudotuberculosis C231]
 gi|302330294|gb|ADL20488.1| cold shock protein B [Corynebacterium pseudotuberculosis 1002]
 gi|308275975|gb|ADO25874.1| cold shock protein B [Corynebacterium pseudotuberculosis I19]
          Length = 130

 Score = 54.6 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++WY+P+KGYGF+    S    +D ++ ++ V  AG+  L +GQ + +D+     
Sbjct: 1  MPIGRVRWYDPEKGYGFV----SNPGDEDCYVGKN-VLPAGVDKLEKGQRIEFDFAAVGK 55

Query: 62 NGKYSAENLKLVP 74
            K  A  +K++ 
Sbjct: 56 --KPQALRIKILE 66


>gi|284166114|ref|YP_003404393.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
 gi|284015769|gb|ADB61720.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
          Length = 65

 Score = 54.6 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ ++N   GYGFI+ E + E   DVF H   V   G  +L EG+ + +D  Q   
Sbjct: 1  MANGNVDFFNDTGGYGFISTEDADE---DVFFHMEDV---GGPDLEEGEEIEFDIEQA-P 53

Query: 62 NGKYSAENLK 71
           G  +   ++
Sbjct: 54 KGPRATNVVR 63


>gi|195495012|ref|XP_002095086.1| GE19874 [Drosophila yakuba]
 gi|194181187|gb|EDW94798.1| GE19874 [Drosophila yakuba]
          Length = 143

 Score = 54.6 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
            G +K ++  KG+GFITP      G+DVF H S +     +    G  V Y         
Sbjct: 56  TGIVKSFSRTKGHGFITPHA---GGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPPKY 110

Query: 63  GKYSAENLKL 72
            K+ A ++++
Sbjct: 111 EKHQAVHVQI 120


>gi|194872357|ref|XP_001973013.1| GG13577 [Drosophila erecta]
 gi|190654796|gb|EDV52039.1| GG13577 [Drosophila erecta]
          Length = 143

 Score = 54.6 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
            G +K ++  KG+GFITP      G+DVF H S +     +    G  V Y         
Sbjct: 56  TGIVKSFSRTKGHGFITPHA---GGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPPKY 110

Query: 63  GKYSAENLKL 72
            K+ A ++++
Sbjct: 111 EKHQAVHVQI 120


>gi|254992513|ref|ZP_05274703.1| major cold-shock protein [Listeria monocytogenes FSL J2-064]
          Length = 39

 Score = 54.2 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 33 LHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          +H SA+   G   L EGQ V ++ V+    G  + +  KL
Sbjct: 1  VHFSAIEGEGFKTLDEGQSVEFEIVEGQ-RGPQAEKVTKL 39


>gi|254491496|ref|ZP_05104675.1| conserved hypothetical protein [Methylophaga thiooxidans DMS010]
 gi|224462974|gb|EEF79244.1| conserved hypothetical protein [Methylophaga thiooxydans DMS010]
          Length = 207

 Score = 54.2 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            +G IK +N  KGYGFI PE     G D+FLH  +V S G      G+ + Y   ++  
Sbjct: 4  RRKGKIKTWNEGKGYGFIIPES---GGKDIFLHIKSVQSRG-RVPKLGETIAYTLSKDKQ 59

Query: 62 N 62
          N
Sbjct: 60 N 60


>gi|90578025|ref|ZP_01233836.1| Predicted membrane protein [Vibrio angustum S14]
 gi|90441111|gb|EAS66291.1| Predicted membrane protein [Vibrio angustum S14]
          Length = 204

 Score = 54.2 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G I  +N  KG+GFI P+       DVF H SA+           + +T+   + D
Sbjct: 1  MAQQGKIISWNQQKGFGFIAPD---NGEQDVFFHVSALPDKQCR-PRINEAITFCIGK-D 55

Query: 61 ANGKYSAENLK 71
            G+ SA  + 
Sbjct: 56 KKGRMSATTVT 66


>gi|284166801|ref|YP_003405080.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
 gi|284016456|gb|ADB62407.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
          Length = 64

 Score = 54.2 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G + ++N   GYGFI  + S +   DVF H   V   G  +LTEG  + +D  Q   
Sbjct: 1  MANGKVDFFNDTGGYGFIETDDSDD---DVFFHMEDV---GGEDLTEGTEIEFDIEQA-P 53

Query: 62 NGKYSAENLK 71
           G  +   ++
Sbjct: 54 KGPRATNVVR 63


>gi|145284604|gb|ABP52049.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 27

 Score = 54.2 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KG+GFI PE     GDDVF+H
Sbjct: 1  GQVKWFNNAKGFGFICPES---GGDDVFVH 27


>gi|24372324|ref|NP_716366.1| cold shock domain-contain protein [Shewanella oneidensis MR-1]
 gi|24346266|gb|AAN53811.1|AE015518_8 cold shock domain family protein [Shewanella oneidensis MR-1]
          Length = 203

 Score = 54.2 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 4/41 (9%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40
          ++ RG  ++W N +KG+GFI PE S     DVF+H SA+  
Sbjct: 2  LMDRGVLVRW-NEEKGFGFIQPEQS--GARDVFIHISALKM 39


>gi|291448330|ref|ZP_06587720.1| cold-shock DNA-binding protein [Streptomyces roseosporus NRRL
          15998]
 gi|291351277|gb|EFE78181.1| cold-shock DNA-binding protein [Streptomyces roseosporus NRRL
          15998]
          Length = 142

 Score = 54.2 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 14/85 (16%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQND 60
          +  G I  ++  +GYGFI P+   E  +DVF+H + +       L   G+ V Y     D
Sbjct: 1  MMTGKILRFDEVRGYGFIAPD---EGDEDVFMHANDLLEEKY--LYQAGRRVEYFLESGD 55

Query: 61 ANGK--------YSAENLKLVPKSS 77
             K         +A  +  VP+SS
Sbjct: 56 KGPKAGEIRLVRQAAAPVSRVPRSS 80


>gi|37675872|ref|NP_936268.1| hypothetical protein VVA0212 [Vibrio vulnificus YJ016]
 gi|37200411|dbj|BAC96238.1| predicted membrane protein [Vibrio vulnificus YJ016]
          Length = 198

 Score = 54.2 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59
          M  +G I  +N +KGYGFI+  G       VF H S+V + G    + +   VT++  + 
Sbjct: 1  MAIKGQIIEWNDEKGYGFISAIGGELK---VFFHISSVTNRGYRPKIKDN--VTFNVAE- 54

Query: 60 DANGKYSAENLKLV 73
          D  G+++AEN+ ++
Sbjct: 55 DKKGRFNAENVVVL 68


>gi|325849753|ref|ZP_08170900.1| cold shock protein CspB [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325479982|gb|EGC83062.1| cold shock protein CspB [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 66

 Score = 54.2 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62
           G +++++  KG+GFI  E       D F H S + S      +  G  V +D       
Sbjct: 2  EGKVRFFDEKKGFGFIESESG-----DYFFHYSEIISDKDYKTIENGARVEFDVKDLGRG 56

Query: 63 GKYSAENLK 71
             +A N+K
Sbjct: 57 --DTAFNVK 63


>gi|256422955|ref|YP_003123608.1| cold-shock DNA-binding domain protein [Chitinophaga pinensis DSM
          2588]
 gi|256037863|gb|ACU61407.1| cold-shock DNA-binding domain protein [Chitinophaga pinensis DSM
          2588]
          Length = 67

 Score = 54.2 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K++N  KG+GFI  E S +     F+H + +    +  +     V ++  +     
Sbjct: 6  QGTVKFFNETKGFGFIIHEESDKET---FVHVNGL----IHEIQADDRVEFELQEGRKG- 57

Query: 64 KYSAENLKLV 73
            +A N++ +
Sbjct: 58 -MNAVNVRRI 66


>gi|110636506|ref|YP_676713.1| cold-shock DNA-binding protein family protein [Cytophaga
          hutchinsonii ATCC 33406]
 gi|110279187|gb|ABG57373.1| cold-shock DNA-binding protein family [Cytophaga hutchinsonii
          ATCC 33406]
          Length = 63

 Score = 54.2 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++ G++K++N  KG+GFI     + S  ++F+H S +       +T+   V ++ V+   
Sbjct: 1  MNTGTVKFFNETKGFGFI---LDSASNKEIFVHVSGLK----EQITKDDKVQFEIVEG-K 52

Query: 62 NGKYSAENLKL 72
           G  + E  K+
Sbjct: 53 KGVNAVEVKKI 63


>gi|195376475|ref|XP_002047022.1| GJ13199 [Drosophila virilis]
 gi|194154180|gb|EDW69364.1| GJ13199 [Drosophila virilis]
          Length = 142

 Score = 54.2 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
           G +K ++  KG+GFITP G    G+DVF H S +     +    G  V Y          
Sbjct: 57  GVVKSFSRTKGHGFITPHG---GGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPPKFE 111

Query: 64  KYSAENLKL 72
           K+ A ++++
Sbjct: 112 KHQAVHVQI 120


>gi|320158020|ref|YP_004190398.1| membrane protein [Vibrio vulnificus MO6-24/O]
 gi|319933332|gb|ADV88195.1| membrane protein [Vibrio vulnificus MO6-24/O]
          Length = 198

 Score = 53.8 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59
          M  +G I  +N +KGYGFI+  G       VF H S+V + G    + +   VT++  + 
Sbjct: 1  MAIKGQIIEWNDEKGYGFISAIGGELK---VFFHISSVTNRGYRPKIKDN--VTFNVAE- 54

Query: 60 DANGKYSAENLKLV 73
          D  G+++AEN+ ++
Sbjct: 55 DKKGRFNAENVVVL 68


>gi|120602350|ref|YP_966750.1| cold-shock DNA-binding domain-containing protein [Desulfovibrio
          vulgaris DP4]
 gi|120562579|gb|ABM28323.1| cold-shock DNA-binding protein family [Desulfovibrio vulgaris
          DP4]
          Length = 201

 Score = 53.8 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 12/73 (16%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN---LTE-GQLVTYDY 56
          M  +G I  +N ++G+GFI+P+   +    VF+H SA       +   L E G+ V Y  
Sbjct: 24 MFDQGKIAQWNDERGFGFISPD---DGSPRVFVHISA-----FRSRHPLPEVGERVLYYL 75

Query: 57 VQNDANGKYSAEN 69
                G  ++  
Sbjct: 76 GPLSPKGPRASVV 88


>gi|120601923|ref|YP_966323.1| cold-shock DNA-binding domain-containing protein [Desulfovibrio
          vulgaris DP4]
 gi|120562152|gb|ABM27896.1| cold-shock DNA-binding protein family [Desulfovibrio vulgaris
          DP4]
          Length = 177

 Score = 53.8 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+ +G I  +N  +G+GFITP+ +T     VF+H SA           G+ V Y      
Sbjct: 1  MLKQGKIAQWNDARGFGFITPDDATRR---VFVHISAFRHR-YPLPQAGERVFYYLGAPT 56

Query: 61 ANGKYSAENLK 71
            G   AE ++
Sbjct: 57 DKGPR-AEAVQ 66


>gi|126662142|ref|ZP_01733141.1| cold shock protein [Flavobacteria bacterium BAL38]
 gi|126625521|gb|EAZ96210.1| cold shock protein [Flavobacteria bacterium BAL38]
          Length = 148

 Score = 53.8 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 9/69 (13%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G+I ++N  KG+GFI    + E+G+  F+H S +    L ++ EG LVTYD  +      
Sbjct: 89  GTIDFFNDSKGFGFI---KAVETGEKYFVHISGL----LDDVKEGNLVTYDLEKGAKG-- 139

Query: 65  YSAENLKLV 73
            +A N+K +
Sbjct: 140 MNAVNVKKI 148


>gi|209736846|gb|ACI69292.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
 gi|303658085|gb|ADM15905.1| Nuclease-sensitive element-binding protein 1 [Salmo salar]
          Length = 194

 Score = 53.8 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 7/50 (14%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQ 50
          G++KW+N   GYGFI      ++ +DVF+H++A+        L ++ +G+
Sbjct: 41 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPKKYLRSVGDGE 87


>gi|76802502|ref|YP_327510.1| cold shock protein [Natronomonas pharaonis DSM 2160]
 gi|76558367|emb|CAI49958.1| probable cold shock protein [Natronomonas pharaonis DSM 2160]
          Length = 64

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ ++N   GYGFI  E + E   DVF H   V   G  +LTEG  + +D  +   
Sbjct: 1  MATGTVDFFNDTGGYGFIETEDADE---DVFFHMEDV---GGEDLTEGTDLEFDIDEA-P 53

Query: 62 NGKYSAENLKL 72
           G  +   +++
Sbjct: 54 KGPRATNVVRV 64


>gi|27367741|ref|NP_763268.1| membrane protein [Vibrio vulnificus CMCP6]
 gi|27359314|gb|AAO08258.1| membrane protein [Vibrio vulnificus CMCP6]
          Length = 198

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59
          M  +G I  +N +KGYGFI+  G       VF H S+V + G    + +   VT++  + 
Sbjct: 1  MAIKGQIIEWNDEKGYGFISAIGGELK---VFFHISSVTNRGYRPKIKDN--VTFNVAE- 54

Query: 60 DANGKYSAENLKLV 73
          D  G+++AEN+ ++
Sbjct: 55 DKKGRFNAENVVVL 68


>gi|74228917|dbj|BAE21931.1| unnamed protein product [Mus musculus]
          Length = 138

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 15 GYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G+GFI+    EG+      DVF+H+S +   G  +L EG+ V + + ++   
Sbjct: 2  GFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSPKG 53


>gi|118082706|ref|XP_422970.2| PREDICTED: hypothetical protein [Gallus gallus]
 gi|326912009|ref|XP_003202347.1| PREDICTED: cold shock domain-containing protein C2-like [Meleagris
           gallopavo]
          Length = 153

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           +++G  K ++  +G+GFITPE  TE   D+F+H S +     +   EG  VTY       
Sbjct: 68  IYKGVCKQFSRSQGHGFITPENGTE---DIFVHVSDIEGE--YVPVEGDEVTYKVCPIPP 122

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 123 KNQKFQAVEVVL 134


>gi|312379713|gb|EFR25904.1| hypothetical protein AND_08352 [Anopheles darlingi]
          Length = 169

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 28/82 (34%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHR-----------------------SAVASAGLFNLTE 48
           P KG+GFITP+   + G +VF+H+                       S +   G  +L E
Sbjct: 47  PKKGWGFITPD---DGGQEVFVHQVHCRLSIEFPSASTDGYLFSVLQSVIQMGGFRSLGE 103

Query: 49  GQLVTYDYVQNDANGKYSAENL 70
            + V ++         Y A N+
Sbjct: 104 NEEVEFESKLTGKG--YEATNV 123


>gi|189066655|dbj|BAG36202.1| unnamed protein product [Homo sapiens]
          Length = 153

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           + +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY       
Sbjct: 68  MFKGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPP 122

Query: 61  ANGKYSAENLKL 72
            N K+ A  + L
Sbjct: 123 KNQKFQAVEVVL 134


>gi|156537640|ref|XP_001607820.1| PREDICTED: similar to Y-box protein Ct-p40 [Nasonia vitripennis]
          Length = 335

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA----GLFNLTEGQLVTYDYVQN 59
            G++KW+N   GYGFI          D+F+ +  +++      + ++ +G++V +D V  
Sbjct: 70  TGTVKWFNVKSGYGFINRSVFHF---DIFVCQRCISNNLPSKAVRSVGDGEVVEFDVVIG 126

Query: 60  DANGKYSAEN 69
           +  G  +A  
Sbjct: 127 E-KGNEAANV 135


>gi|126334673|ref|XP_001367062.1| PREDICTED: similar to Calcium regulated heat stable protein 1,
           24kDa [Monodelphis domestica]
          Length = 147

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           +++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 62  IYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPMEGDEVTYKMCSIPP 116

Query: 61  ANGKYSAENLKL 72
            N K+ A  + +
Sbjct: 117 KNEKHQAVEVVI 128


>gi|326929252|ref|XP_003210782.1| PREDICTED: calcium-regulated heat stable protein 1-like, partial
          [Meleagris gallopavo]
          Length = 102

 Score = 53.8 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
          +++G  K +   KG+GFI+P    + G D+F+H S +     +    G  VTY       
Sbjct: 17 IYKGVCKCFCRSKGHGFISP---ADGGPDIFVHISDIEGE--YVPVSGDEVTYKVCTIPP 71

Query: 61 ANGKYSAENLKL 72
           N K  A  + +
Sbjct: 72 KNEKLQAVEVVI 83


>gi|256784096|ref|ZP_05522527.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 142

 Score = 53.4 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59
          +  G +  ++  +GYGFI PE   + G+DVFLH +   +    + +   G +V ++    
Sbjct: 1  MVAGRVVRFDGTRGYGFIAPE---DGGEDVFLHVNDLLIPEESVRS---GLVVEFEVETG 54

Query: 60 DANGKYS 66
          +   K S
Sbjct: 55 ERGLKAS 61


>gi|242246995|ref|NP_001156264.1| calcium-regulated heat stable protein 1 [Acyrthosiphon pisum]
 gi|239789112|dbj|BAH71202.1| ACYPI008400 [Acyrthosiphon pisum]
          Length = 135

 Score = 53.4 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
           G +K++   KG+GFITP+       D F+H S +       L  G  V Y          
Sbjct: 55  GKVKYFCKSKGHGFITPD---NGDPDTFVHISDIEGE-FVPL-PGDTVHYRLCPIPPKLE 109

Query: 64  KYSAENLKLV 73
           K  A ++++V
Sbjct: 110 KCQAVHVEIV 119


>gi|114564799|ref|YP_752313.1| cold-shock DNA-binding domain-containing protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114336092|gb|ABI73474.1| cold-shock DNA-binding protein family [Shewanella frigidimarina
          NCIMB 400]
          Length = 204

 Score = 53.4 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + RG++  +N +KG+GFI PE       DVF+H S +       +  G  + +   +N  
Sbjct: 1  MERGTLIRWNTEKGFGFIKPETGDN--QDVFIHISTLKHMARKPIV-GDEILFHR-ENQP 56

Query: 62 NGKYSAE 68
          +GK  A 
Sbjct: 57 DGKVKAV 63


>gi|225719590|gb|ACO15641.1| Cold shock domain-containing protein C2 [Caligus clemensi]
          Length = 171

 Score = 53.4 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +H G++K++   +G+GFITP  S     + F+H S +    +        V +       
Sbjct: 67  IHEGTVKYFCRSRGFGFITPNKSVNDNQEFFMHISDIEGEFVP--RRNDSVQFKVCPIPP 124

Query: 62  N-GKYSAENLKLV 73
              K+ A  ++++
Sbjct: 125 RFEKFQAVQVRII 137


>gi|322369491|ref|ZP_08044056.1| cold-shock DNA-binding domain protein [Haladaptatus
          paucihalophilus DX253]
 gi|320551223|gb|EFW92872.1| cold-shock DNA-binding domain protein [Haladaptatus
          paucihalophilus DX253]
          Length = 64

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G + ++N   GYGFI+ + S +   DVF H   V   G  +LTEG  + +D  Q   
Sbjct: 1  MANGKVDFFNDTGGYGFISTDDSDD---DVFFHMEDV---GGEDLTEGTDIEFDIEQA-P 53

Query: 62 NGKYSAENLK 71
           G  +   ++
Sbjct: 54 KGPRATNVVR 63


>gi|104773833|ref|YP_618813.1| cold shock protein B [Lactobacillus delbrueckii subsp. bulgaricus
          ATCC 11842]
 gi|116513840|ref|YP_812746.1| cold shock protein [Lactobacillus delbrueckii subsp. bulgaricus
          ATCC BAA-365]
 gi|103422914|emb|CAI97576.1| Cold shock protein B [Lactobacillus delbrueckii subsp. bulgaricus
          ATCC 11842]
 gi|116093155|gb|ABJ58308.1| cold-shock DNA-binding protein family [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC BAA-365]
 gi|325125497|gb|ADY84827.1| Putative cold-shock protein [Lactobacillus delbrueckii subsp.
          bulgaricus 2038]
          Length = 69

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +  G +K +     +GFI  + + +S    F+  +A+   G   L  GQ V Y   Q 
Sbjct: 1  MRTGLVKQFAEKASFGFIEDDQNHKS---YFVFYTAIKEEGYKRLEVGQRVRYQLAQG 55


>gi|297157600|gb|ADI07312.1| putative DNA binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 137

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 8/78 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQN 59
          M   G I  ++  +GYGFI P+   + G+DVF+H + +      +L   G  V +     
Sbjct: 1  MTITGKILRFDEFRGYGFIAPD---DGGEDVFMHANDLVDE--KHLFQPGSKVEFVPEYG 55

Query: 60 DANGKYSAENLKLVPKSS 77
          D   K  A  +++V +S+
Sbjct: 56 DKGPK--ASEVRIVQRSA 71


>gi|269138656|ref|YP_003295357.1| putative cold shock protein [Edwardsiella tarda EIB202]
 gi|267984317|gb|ACY84146.1| putative cold shock protein [Edwardsiella tarda EIB202]
 gi|304558666|gb|ADM41330.1| Cold shock protein CspH [Edwardsiella tarda FL6-60]
          Length = 70

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +++++   G GFI+P   ++   DV +H SA+       L+ G  V +    +   G
Sbjct: 6  TGIVRFFDYRSGKGFISP---SDGRKDVQVHISALHLKDEETLSAGLRVEF-CRMHGRQG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PTAANV 67


>gi|319428067|gb|ADV56141.1| Cold-shock protein DNA-binding protein [Shewanella putrefaciens
          200]
          Length = 149

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-GQLVTYDYVQN 59
          M  +G +KW++  +G+GFIT   S   G D + H S V  +    L E G  VT++ +  
Sbjct: 1  MRIQGVVKWFSVPQGFGFIT---SITEGTDHYFHVSDVIGS---ALPEIGDKVTFETIST 54

Query: 60 DA--NGKY 65
               GK 
Sbjct: 55 PKGLRGKR 62


>gi|329925038|ref|ZP_08279982.1| cold-shock DNA-binding domain protein [Paenibacillus sp. HGF5]
 gi|328940157|gb|EGG36489.1| cold-shock DNA-binding domain protein [Paenibacillus sp. HGF5]
          Length = 80

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G+++ +N  KGYGF+  +G+   G+ +F H +     GL  L+ G+ ++++  + DA G
Sbjct: 11 TGTVRKFNDPKGYGFVDVDGT---GERLFFHINESIEPGLGWLSYGERISFEIGE-DAKG 66

Query: 64 KYSAENLKLV 73
          +  A  +KL+
Sbjct: 67 RNHAVKIKLI 76


>gi|293346846|ref|XP_001067034.2| PREDICTED: lin-28 homolog [Rattus norvegicus]
 gi|293358614|ref|XP_233546.4| PREDICTED: lin-28 homolog [Rattus norvegicus]
          Length = 196

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 11 NPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          N   G+GF++         +   DVF+H+S + + G  +L EG+ V + + ++   
Sbjct: 35 NVRMGFGFLSMTACAGVALDPTMDVFVHQSRLHTEGFRSLKEGEAVEFTFKKSAKG 90


>gi|296224861|ref|XP_002758248.1| PREDICTED: calcium-regulated heat stable protein 1-like [Callithrix
           jacchus]
          Length = 147

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 117 KNEKLQAVEVVI 128


>gi|296219544|ref|XP_002755926.1| PREDICTED: calcium-regulated heat stable protein 1-like [Callithrix
           jacchus]
          Length = 147

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 117 KNEKLQAVEVVI 128


>gi|221052274|ref|XP_002257713.1| cold-shock protein [Plasmodium knowlesi strain H]
 gi|193807544|emb|CAQ38049.1| cold-shock protein, putative [Plasmodium knowlesi strain H]
          Length = 144

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
           G++  ++  KGYGFI P    + G D+F+H + +
Sbjct: 33 TGTVIKFDRRKGYGFIKP---NDGGPDIFVHYTDI 64


>gi|149409245|ref|XP_001506560.1| PREDICTED: similar to transforming, acidic coiled-coil containing
           protein 3 [Ornithorhynchus anatinus]
          Length = 154

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 69  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 123

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 124 KNEKLQAVEVVI 135


>gi|109127552|ref|XP_001102514.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1
           [Macaca mulatta]
 gi|109127554|ref|XP_001102603.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2
           [Macaca mulatta]
 gi|109127556|ref|XP_001102694.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3
           [Macaca mulatta]
 gi|297283445|ref|XP_002802430.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta]
 gi|297283448|ref|XP_002802431.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta]
 gi|297283450|ref|XP_002802432.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta]
 gi|297283452|ref|XP_002802433.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta]
          Length = 147

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 117 KNEKLQAVEVVI 128


>gi|4583307|gb|AAD25021.1|AF115345_1 calcium-regulated heat stable protein CRHSP-24 [Homo sapiens]
          Length = 147

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 117 KNEKLQAVEVVI 128


>gi|74213976|dbj|BAE29409.1| unnamed protein product [Mus musculus]
          Length = 148

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 63  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 117

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 118 KNEKLQAVEVVI 129


>gi|109715854|ref|NP_001035941.1| calcium-regulated heat stable protein 1 [Homo sapiens]
 gi|109715858|ref|NP_055131.2| calcium-regulated heat stable protein 1 [Homo sapiens]
 gi|114660916|ref|XP_001137922.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 6 [Pan
           troglodytes]
 gi|114660918|ref|XP_001138007.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 7 [Pan
           troglodytes]
 gi|114660920|ref|XP_001137407.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 1 [Pan
           troglodytes]
 gi|114660922|ref|XP_001137655.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3 [Pan
           troglodytes]
 gi|114660924|ref|XP_001137742.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 4 [Pan
           troglodytes]
 gi|114660926|ref|XP_523291.2| PREDICTED: calcium-regulated heat stable protein 1 isoform 9 [Pan
           troglodytes]
 gi|114660928|ref|XP_001137575.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2 [Pan
           troglodytes]
 gi|114660930|ref|XP_001138086.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 8 [Pan
           troglodytes]
 gi|114660932|ref|XP_001137823.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 5 [Pan
           troglodytes]
 gi|332845244|ref|XP_003315008.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
           troglodytes]
 gi|332845246|ref|XP_003315009.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
           troglodytes]
 gi|332845248|ref|XP_003315010.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
           troglodytes]
 gi|332845251|ref|XP_003315011.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan
           troglodytes]
 gi|41016932|sp|Q9Y2V2|CHSP1_HUMAN RecName: Full=Calcium-regulated heat stable protein 1; AltName:
           Full=Calcium-regulated heat-stable protein of 24 kDa;
           Short=CRHSP-24
 gi|315364426|pdb|3AQQ|A Chain A, Crystal Structure Of Human Crhsp-24
 gi|315364427|pdb|3AQQ|C Chain C, Crystal Structure Of Human Crhsp-24
 gi|315364428|pdb|3AQQ|B Chain B, Crystal Structure Of Human Crhsp-24
 gi|315364429|pdb|3AQQ|D Chain D, Crystal Structure Of Human Crhsp-24
 gi|13097198|gb|AAH03366.1| Calcium regulated heat stable protein 1, 24kDa [Homo sapiens]
 gi|82568913|gb|AAI08284.1| Calcium regulated heat stable protein 1, 24kDa [Homo sapiens]
 gi|119605602|gb|EAW85196.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
           sapiens]
 gi|119605603|gb|EAW85197.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
           sapiens]
 gi|119605604|gb|EAW85198.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
           sapiens]
 gi|119605605|gb|EAW85199.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo
           sapiens]
 gi|189053098|dbj|BAG34720.1| unnamed protein product [Homo sapiens]
 gi|190689713|gb|ACE86631.1| calcium regulated heat stable protein 1, 24kDa protein [synthetic
           construct]
 gi|190691077|gb|ACE87313.1| calcium regulated heat stable protein 1, 24kDa protein [synthetic
           construct]
 gi|307686115|dbj|BAJ20988.1| calcium regulated heat stable protein 1, 24kDa [synthetic
           construct]
          Length = 147

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 117 KNEKLQAVEVVI 128


>gi|13385290|ref|NP_080097.1| calcium-regulated heat stable protein 1 [Mus musculus]
 gi|309264712|ref|XP_003086339.1| PREDICTED: calcium-regulated heat stable protein 1-like [Mus
           musculus]
 gi|41016923|sp|Q9CR86|CHSP1_MOUSE RecName: Full=Calcium-regulated heat stable protein 1; AltName:
           Full=Calcium-regulated heat-stable protein of 24 kDa;
           Short=CRHSP-24
 gi|15778558|gb|AAL07470.1|AF414101_1 calcineurin substrate CRHSP-24 [Mus musculus]
 gi|12833143|dbj|BAB22408.1| unnamed protein product [Mus musculus]
 gi|12834885|dbj|BAB23077.1| unnamed protein product [Mus musculus]
 gi|12836086|dbj|BAB23495.1| unnamed protein product [Mus musculus]
 gi|15029979|gb|AAH11225.1| Calcium regulated heat stable protein 1 [Mus musculus]
 gi|56541222|gb|AAH86754.1| Calcium regulated heat stable protein 1 [Mus musculus]
 gi|74140430|dbj|BAE42365.1| unnamed protein product [Mus musculus]
 gi|74150621|dbj|BAE25463.1| unnamed protein product [Mus musculus]
 gi|74196650|dbj|BAE34427.1| unnamed protein product [Mus musculus]
 gi|74199323|dbj|BAE33186.1| unnamed protein product [Mus musculus]
 gi|74208059|dbj|BAE29139.1| unnamed protein product [Mus musculus]
 gi|74213308|dbj|BAE41777.1| unnamed protein product [Mus musculus]
 gi|74214291|dbj|BAE40388.1| unnamed protein product [Mus musculus]
 gi|74222561|dbj|BAE38151.1| unnamed protein product [Mus musculus]
 gi|148664880|gb|EDK97296.1| mCG123718 [Mus musculus]
 gi|148703087|gb|EDL35034.1| mCG1049436 [Mus musculus]
          Length = 148

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 63  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 117

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 118 KNEKLQAVEVVI 129


>gi|22758142|ref|NP_690003.1| calcium-regulated heat stable protein 1 [Rattus norvegicus]
 gi|41016763|sp|Q9WU49|CHSP1_RAT RecName: Full=Calcium-regulated heat stable protein 1; AltName:
           Full=Calcium-regulated heat-stable protein of 24 kDa;
           Short=CRHSP-24
 gi|4583309|gb|AAD25022.1|AF115346_1 calcium-regulated heat stable protein CRHSP-24 [Rattus sp.]
 gi|49522734|gb|AAH71173.1| Calcium regulated heat stable protein 1 [Rattus norvegicus]
 gi|149042602|gb|EDL96239.1| calcium regulated heat stable protein 1, isoform CRA_a [Rattus
           norvegicus]
          Length = 147

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 117 KNEKLQAVEVVI 128


>gi|86143394|ref|ZP_01061796.1| cold shock protein, putative DNA-binding protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85830299|gb|EAQ48759.1| cold shock protein, putative DNA-binding protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 154

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + +G + +++  KG+GFI     TE+ +  F+H S +    +    E   V+++  +   
Sbjct: 91  IRKGKVSFFDHSKGFGFII---DTENQEKYFVHVSGILEDAI---DENDKVSFELERGQK 144

Query: 62  NGKYSAENLKLV 73
               +A  +K +
Sbjct: 145 G--MNAVQVKKI 154


>gi|110667237|ref|YP_657048.1| cold shock protein [Haloquadratum walsbyi DSM 16790]
 gi|109624984|emb|CAJ51397.1| probable cold shock protein [Haloquadratum walsbyi DSM 16790]
          Length = 64

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G + ++N   GYGFI+ + + +    VF H   V   G  +L EGQ V ++  Q+  
Sbjct: 1  MAEGKVDFFNDTGGYGFISTDDTDDD---VFFHMEDV---GGPDLEEGQEVEFEIEQS-P 53

Query: 62 NGKYSAENLK 71
           G  +A  ++
Sbjct: 54 KGPRAANLIR 63


>gi|294498585|ref|YP_003562285.1| cold shock protein [Bacillus megaterium QM B1551]
 gi|294348522|gb|ADE68851.1| cold shock protein [Bacillus megaterium QM B1551]
          Length = 60

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +K Y+ +KG+GFI P+   E    +F+H S+V ++   +L  GQ V+Y        G  +
Sbjct: 1  MKCYDKEKGFGFILPDNGLEE---LFVHFSSVYNS--NSLKVGQEVSY-IEYKGHKGPQA 54


>gi|301768643|ref|XP_002919738.1| PREDICTED: calcium-regulated heat stable protein 1-like [Ailuropoda
           melanoleuca]
 gi|281342656|gb|EFB18240.1| hypothetical protein PANDA_008393 [Ailuropoda melanoleuca]
          Length = 147

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 117 KNEKLQAVEVVI 128


>gi|229595426|ref|XP_001017681.3| hypothetical protein TTHERM_00340170 [Tetrahymena thermophila]
 gi|225566130|gb|EAR97436.3| hypothetical protein TTHERM_00340170 [Tetrahymena thermophila
           SB210]
          Length = 801

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43
           ++G++K+++ DK YGFI  + S     D+F+H   +  AG+
Sbjct: 556 YKGTLKFFDQDKNYGFIVEDESR---TDIFVHFDDLQKAGI 593


>gi|193480019|gb|ACF18026.1| cold shock protein [uncultured bacterium]
          Length = 40

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
          VF+H  A+   G  +LTEGQ V Y  V+        AE++
Sbjct: 3  VFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG--LQAEDV 40


>gi|114051954|ref|NP_001039416.1| calcium-regulated heat stable protein 1 [Bos taurus]
 gi|84201642|gb|AAI11638.1| Calcium regulated heat stable protein 1, 24kDa [Bos taurus]
 gi|296473437|gb|DAA15552.1| calcium regulated heat stable protein 1, 24kDa [Bos taurus]
          Length = 147

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPMEGDEVTYKMCSIPP 116

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 117 KNEKLQAVEVVI 128


>gi|118380115|ref|XP_001023222.1| 'Cold-shock' DNA-binding domain containing protein [Tetrahymena
           thermophila]
 gi|89304989|gb|EAS02977.1| 'Cold-shock' DNA-binding domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 725

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 12/82 (14%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLV--TY 54
            + GS+K+++ +K YGFI  +   +   D+F+H   +  AG     L +  +G ++  ++
Sbjct: 612 RYMGSLKFFDENKNYGFIVMD---DDNRDIFVHYDDLQKAGITKEFLKSSKQGNVIRFSF 668

Query: 55  DYVQNDANGKYS--AENLKLVP 74
             +Q     K S  A  L+++P
Sbjct: 669 SCMQYIGKYKQSKKAVELQVMP 690


>gi|237805445|ref|ZP_04592149.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331026552|gb|EGI06607.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 31

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 4/32 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFL 33
             G++KW+N +KG+GFITP    +SGDD+F+
Sbjct: 4  RQTGTVKWFNDEKGFGFITP----QSGDDLFV 31


>gi|262045860|ref|ZP_06018824.1| cold shock protein [Lactobacillus crispatus MV-3A-US]
 gi|260573819|gb|EEX30375.1| cold shock protein [Lactobacillus crispatus MV-3A-US]
          Length = 67

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G+++ ++    YGFI  + + +S    F+   A+   G   L  GQ V Y   Q   
Sbjct: 1  MRLGTVEQFDEGSSYGFIEDDRNHKS---YFVFYKAIKEEGYKTLQVGQRVKYQLAQGKN 57

Query: 62 N 62
           
Sbjct: 58 G 58


>gi|195360744|gb|ACF95833.1| CSP [uncultured bacterium]
          Length = 41

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
          VF+H  A+   G  +LTEGQ V Y  V+        AE++
Sbjct: 2  VFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG--LQAEDV 39


>gi|311251531|ref|XP_003124657.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 3
           [Sus scrofa]
          Length = 183

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           +++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 98  IYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 152

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 153 KNEKLQAVEVVI 164


>gi|291220834|ref|XP_002730428.1| PREDICTED: cold shock domain containing E1, RNA binding-like
           [Saccoglossus kowalevskii]
          Length = 816

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GFI  E   ++   +F H S V   G   L  G  V +  VQN  +GKYSA N
Sbjct: 701 DSVKGQFGFIDYEVGEDNKK-LFFHMSEVQ-EG-TELQPGDEVEFVIVQNQRSGKYSACN 757

Query: 70  LKLVPK 75
           ++ + K
Sbjct: 758 VRRISK 763



 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +GFI    + E   +VF H S      + +L  G  V Y   +  A 
Sbjct: 550 FGFIE---TAEHDREVFFHYSEFDGD-VNSLDLGDEVEYSVARKGAK 592


>gi|260904269|ref|ZP_05912591.1| cold shock protein [Brevibacterium linens BL2]
          Length = 126

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 10/70 (14%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +KW++ DKG+GF+  E  +++    FLH S +       +T+G  + YD V +  
Sbjct: 1  MPTGRVKWFDVDKGFGFVIAEDGSQA----FLHSSVLPED--AEVTKGTRLDYDVVDSRR 54

Query: 62 NGKYSAENLK 71
               A+ LK
Sbjct: 55 G----AQVLK 60


>gi|224095055|ref|XP_002197370.1| PREDICTED: similar to cold shock domain containing C2, RNA binding
           [Taeniopygia guttata]
          Length = 161

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE  TE   D+F+H S +     +   EG  VTY        N
Sbjct: 78  KGVCKQFSRSQGHGFITPENGTE---DIFVHVSDIEGE--YVPVEGDEVTYKVCPIPPKN 132

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 133 QKFQAVEVVL 142


>gi|311251533|ref|XP_003124655.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 1
           [Sus scrofa]
 gi|311251535|ref|XP_003124658.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 4
           [Sus scrofa]
 gi|311251537|ref|XP_003124656.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 2
           [Sus scrofa]
          Length = 146

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           +++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 61  IYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 115

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 116 KNEKLQAVEVVI 127


>gi|149725937|ref|XP_001492855.1| PREDICTED: similar to Calcium regulated heat stable protein 1,
           24kDa [Equus caballus]
          Length = 147

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 117 KNEKLQAVEVVI 128


>gi|332240252|ref|XP_003269303.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 1
           [Nomascus leucogenys]
 gi|332240254|ref|XP_003269304.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 2
           [Nomascus leucogenys]
 gi|332240256|ref|XP_003269305.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 3
           [Nomascus leucogenys]
 gi|332240258|ref|XP_003269306.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 4
           [Nomascus leucogenys]
 gi|332240260|ref|XP_003269307.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 5
           [Nomascus leucogenys]
 gi|332240262|ref|XP_003269308.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 6
           [Nomascus leucogenys]
 gi|332240264|ref|XP_003269309.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 7
           [Nomascus leucogenys]
 gi|332240266|ref|XP_003269310.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 8
           [Nomascus leucogenys]
          Length = 147

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 62  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 117 KNEKLQAVEVVI 128


>gi|149250840|ref|XP_001474936.1| PREDICTED: calcium-regulated heat stable protein 1-like [Mus
           musculus]
          Length = 148

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 63  VYKGVCKCFCRSKGHGFITP---GDGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 117

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 118 KNEKLQAVEVVI 129


>gi|74181788|dbj|BAE32601.1| unnamed protein product [Mus musculus]
          Length = 148

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 63  VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 117

Query: 61  ANGKYSAENLKL 72
            N K  A  L +
Sbjct: 118 KNEKLQAVELVI 129


>gi|296237954|ref|XP_002763968.1| PREDICTED: hypothetical protein LOC100400889 [Callithrix jacchus]
          Length = 297

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 214 KGVCKQFSRAQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 268

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 269 QKFQAVEVVL 278


>gi|261856418|ref|YP_003263701.1| cold-shock DNA-binding domain protein [Halothiobacillus
          neapolitanus c2]
 gi|261836887|gb|ACX96654.1| cold-shock DNA-binding domain protein [Halothiobacillus
          neapolitanus c2]
          Length = 204

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W    KG+GFI P    + G DVF+H  +  +       +G++VTY    +
Sbjct: 1  MRAKGKIVRW-QDAKGFGFIHP---LDGGADVFVHIRSFTNR-QRRPVDGEIVTYTVEHD 55

Query: 60 DANGKYSAENL 70
            N K +++ +
Sbjct: 56 AQNRKRASDIV 66


>gi|148231151|ref|NP_001089414.1| cold shock domain protein A [Xenopus laevis]
 gi|62740182|gb|AAH94195.1| MGC115344 protein [Xenopus laevis]
          Length = 221

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 3/34 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37
          +G++KW+N   GYGFI      ++ +DVF+H+ A
Sbjct: 37 QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQGA 67


>gi|269217410|ref|ZP_06161264.1| cold-shock domain protein [Actinomyces sp. oral taxon 848 str.
          F0332]
 gi|269213136|gb|EEZ79476.1| cold-shock domain protein [Actinomyces sp. oral taxon 848 str.
          F0332]
          Length = 141

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 10/75 (13%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          V  G +K+++  KG+GFI  +     G +VF   SA+   G   +  G  V +    +  
Sbjct: 18 VPTGRVKFFDEKKGFGFIAGD----DGTEVFFSGSAL-PVGSR-VKAGTRVEFSVA-DTR 70

Query: 62 NGKYSAENLKLVPKS 76
           G  +   L + PK+
Sbjct: 71 RGPQA---LTVAPKA 82


>gi|195328232|ref|XP_002030820.1| GM25657 [Drosophila sechellia]
 gi|195590920|ref|XP_002085192.1| GD14664 [Drosophila simulans]
 gi|194119763|gb|EDW41806.1| GM25657 [Drosophila sechellia]
 gi|194197201|gb|EDX10777.1| GD14664 [Drosophila simulans]
          Length = 143

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
            G +K ++  KG+GFITP      G+DVF H S +     +    G  V Y         
Sbjct: 56  TGMVKSFSRTKGHGFITP---NAGGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPPKY 110

Query: 63  GKYSAENLKL 72
            K+ A ++++
Sbjct: 111 EKHQAVHVQI 120


>gi|21356601|ref|NP_648920.1| CG9705, isoform A [Drosophila melanogaster]
 gi|24665520|ref|NP_730197.1| CG9705, isoform B [Drosophila melanogaster]
 gi|75027588|sp|Q9VVA0|Y9705_DROME RecName: Full=Cold shock domain-containing protein CG9705
 gi|7294059|gb|AAF49414.1| CG9705, isoform A [Drosophila melanogaster]
 gi|16648430|gb|AAL25480.1| LD47312p [Drosophila melanogaster]
 gi|23093318|gb|AAN11740.1| CG9705, isoform B [Drosophila melanogaster]
 gi|220956110|gb|ACL90598.1| CG9705-PA [synthetic construct]
          Length = 143

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
            G +K ++  KG+GFITP      G+DVF H S +     +    G  V Y         
Sbjct: 56  TGMVKSFSRTKGHGFITP---NAGGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPPKY 110

Query: 63  GKYSAENLKL 72
            K+ A ++++
Sbjct: 111 EKHQAVHVQI 120


>gi|254439666|ref|ZP_05053160.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus
           307]
 gi|198255112|gb|EDY79426.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus
           307]
          Length = 181

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +KW++  KG+GF    G      DVF+H   +  AGL +L  G+ +    +Q    G  
Sbjct: 111 RVKWFDKGKGFGFANVFGDD---ADVFVHNEVLRLAGLADLFSGEAIALRAMQG-KRGLM 166

Query: 66  SAENL 70
           +AE L
Sbjct: 167 AAEVL 171



 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IKW++  KG+GFI      + G D+ LH + + + G  ++ +G  +     Q +  G 
Sbjct: 17 GHIKWFDAVKGFGFI---LVQDGGADILLHANVLRNFGQSSVADGTGIEVWVAQTE-RGL 72

Query: 65 YSAENLKL 72
           + E L +
Sbjct: 73 QAVEILSM 80


>gi|289767977|ref|ZP_06527355.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289698176|gb|EFD65605.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 162

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59
          +  G +  ++  +GYGFI PE   + G+DVFLH +   +    + +   G +V ++    
Sbjct: 21 MVAGRVVRFDGTRGYGFIAPE---DGGEDVFLHVNDLLIPEESVRS---GLVVEFEVETG 74

Query: 60 DANGKYS 66
          +   K S
Sbjct: 75 ERGLKAS 81


>gi|116621692|ref|YP_823848.1| cold-shock DNA-binding protein family protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224854|gb|ABJ83563.1| cold-shock DNA-binding protein family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 144

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQNDA 61
             GS+  Y   KG+GF+ P+   + G D+F H S + S GL   L  G  V Y+    D 
Sbjct: 69  QSGSVVTYFEAKGFGFLRPD---DGGRDIFFHVSRL-SEGLATDLRPGTRVLYELGM-DR 123

Query: 62  NGKYSAENLKL 72
            GK +A +L++
Sbjct: 124 TGKMAASSLRI 134


>gi|332293352|ref|YP_004431961.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171438|gb|AEE20693.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 148

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G +++++  KG+GFI    + E     F+H S V   G   L EG  V+Y+  +   
Sbjct: 84  IRTGFVEFFDSSKGFGFIKDADTPEK---YFVHISEV-RDG--ELKEGNKVSYEIERGQK 137

Query: 62  N 62
            
Sbjct: 138 G 138


>gi|310815595|ref|YP_003963559.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium
          vulgare Y25]
 gi|308754330|gb|ADO42259.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium
          vulgare Y25]
          Length = 176

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KWY+  KG+GFI      +   D+ LH + +   GL ++ EG  +T   V     G 
Sbjct: 14 GHVKWYDATKGFGFIV---DPQGRSDILLHANVLRRFGLNSVGEGIEITV-LVSRTPKGA 69

Query: 65 YSAENLKL 72
           + E L +
Sbjct: 70 QAIEILAV 77



 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            +K ++  +G+GF    GS +   DVF+H   +   G  +L +G+ +    +     G  
Sbjct: 107 RVKRFDRTRGFGFANVFGSAD---DVFIHIEVMREGGFSDLRQGEAICLRLI-AGKRGPM 162

Query: 66  SAENLKLVPKSS 77
           +   + ++P  +
Sbjct: 163 A---VAVMPWEA 171


>gi|315126645|ref|YP_004068648.1| cold shock DNA-binding domain-containing protein
          [Pseudoalteromonas sp. SM9913]
 gi|315015159|gb|ADT68497.1| cold shock DNA-binding domain-containing protein
          [Pseudoalteromonas sp. SM9913]
          Length = 192

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G +K +N +KG+GFI          D F+H S++          G ++ ++    D 
Sbjct: 1  MNKGLLKSWNDEKGFGFIKSTTLQH---DTFIHISSLKHMSRK-PKVGDIIYFEVA-TDP 55

Query: 62 NGKYSAENLKL 72
          NGK  A N ++
Sbjct: 56 NGKTKAVNCRI 66


>gi|291410316|ref|XP_002721452.1| PREDICTED: cold shock domain containing C2, RNA binding-like
           [Oryctolagus cuniculus]
          Length = 200

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 117 KGICKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 171

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 172 QKFQAVEVVL 181


>gi|113971703|ref|YP_735496.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          MR-4]
 gi|113886387|gb|ABI40439.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4]
          Length = 185

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 4/39 (10%)

Query: 2  VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39
          + RG  ++W N +KG+GFI PE S   G DVF+H + + 
Sbjct: 1  MERGILVRW-NDEKGFGFIQPEDSK--GKDVFIHITVLK 36


>gi|323488056|ref|ZP_08093309.1| hypothetical protein GPDM_01905 [Planococcus donghaensis MPA1U2]
 gi|323398324|gb|EGA91117.1| hypothetical protein GPDM_01905 [Planococcus donghaensis MPA1U2]
          Length = 68

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++ +KG G IT +    +G+D F     +   G   L  GQ V +   +  A+ 
Sbjct: 2  EGKVKSFDENKGIGMITGD----NGEDFFFEEININVDGFRKLMPGQPVKFTTYEGVADK 57

Query: 64 KYSAENLKLV 73
          +  A N+ L+
Sbjct: 58 ERVATNVTLI 67


>gi|116003971|ref|NP_001070345.1| cold shock domain-containing protein C2 [Bos taurus]
 gi|115305132|gb|AAI23466.1| Cold shock domain containing C2, RNA binding [Bos taurus]
 gi|296486964|gb|DAA29077.1| RNA-binding protein pippin [Bos taurus]
          Length = 153

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 70  KGICKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKVCPIPPKN 124

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 125 QKFQAVEVVL 134


>gi|261252691|ref|ZP_05945264.1| cold shock domain family protein [Vibrio orientalis CIP 102891]
 gi|260936082|gb|EEX92071.1| cold shock domain family protein [Vibrio orientalis CIP 102891]
          Length = 155

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          ++W + D+G+GFI  +       D+F+H S     G      G  V +    N  NGK S
Sbjct: 6  VRWVD-DRGFGFINSDAYP---GDIFVHVSKFKK-GYRRPKIGDKVEFQIEVN--NGKTS 58

Query: 67 AENLKLV 73
          A N+ LV
Sbjct: 59 AHNVLLV 65


>gi|226953537|ref|ZP_03824001.1| cold-shock DNA-binding protein family protein [Acinetobacter sp.
          ATCC 27244]
 gi|226835715|gb|EEH68098.1| cold-shock DNA-binding protein family protein [Acinetobacter sp.
          ATCC 27244]
          Length = 232

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G IK YN D+G+GFI  E       D+F H +     G      G+LV +  V++ 
Sbjct: 1  MFLTGKIKNYNSDRGFGFIEVEHDRS---DIFFHITDFPKIG-GEPKTGELVKFLIVED- 55

Query: 61 ANGKYSAENL 70
            GK+ A N+
Sbjct: 56 -KGKFKATNI 64


>gi|300811331|ref|ZP_07091828.1| cold-shock DNA-binding domain protein [Lactobacillus delbrueckii
          subsp. bulgaricus PB2003/044-T3-4]
 gi|313123449|ref|YP_004033708.1| cold-shock DNA-binding protein family [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|300497695|gb|EFK32720.1| cold-shock DNA-binding domain protein [Lactobacillus delbrueckii
          subsp. bulgaricus PB2003/044-T3-4]
 gi|312280012|gb|ADQ60731.1| Cold-shock DNA-binding protein family [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|325684359|gb|EGD26528.1| major cold shock protein [Lactobacillus delbrueckii subsp. lactis
          DSM 20072]
          Length = 69

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          +  G +K +     +GFI  + + +     F+  +A+   G   L  GQ V Y   Q 
Sbjct: 1  MRTGLVKQFAEKASFGFIEDDQNHKL---YFVFYTAIKEEGYKRLEVGQRVRYQLAQG 55


>gi|224457360|ref|ZP_03665833.1| cold shock DNA -binding domain-containing protein [Francisella
          tularensis subsp. tularensis MA00-2987]
 gi|254875063|ref|ZP_05247773.1| cold shock protein [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|254841062|gb|EET19498.1| cold shock protein [Francisella tularensis subsp. tularensis
          MA00-2987]
          Length = 142

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++K+YN DKGYGFI  E S +    V L  S +   G         V ++  Q+    
Sbjct: 2  QGTVKFYNKDKGYGFIYSEESEKDFLMVKLFLSELLRNG------SDDVEFEVAQSKKG- 54

Query: 64 KYSAENLKLVPKSSN 78
             A N+KL+  + +
Sbjct: 55 -EKAINIKLLKSAED 68


>gi|307332445|ref|ZP_07611509.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306881914|gb|EFN13036.1| cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 134

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 8/78 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQN 59
          M   G I  ++  +GYGFI P+   + G+DVF+H + +      +L   G  V +     
Sbjct: 1  MTTTGKILRFDEFRGYGFIAPD---DGGEDVFMHANDLLDE--KHLFQPGSKVRFVPEYG 55

Query: 60 DANGKYSAENLKLVPKSS 77
          D   K  A  ++++ +++
Sbjct: 56 DKGPK--ASEVRVLERAA 71


>gi|196051124|gb|ACG68730.1| cold shock protein [uncultured bacterium]
          Length = 36

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          VF+H  A+   G  +LTEGQ V Y  V+    
Sbjct: 5  VFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG 36


>gi|145480845|ref|XP_001426445.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393520|emb|CAK59047.1| unnamed protein product [Paramecium tetraurelia]
          Length = 415

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 12/81 (14%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYD- 55
           ++ G +K+++  K YGFI  +   E   D+F+H   +  AG     L    +G  + +  
Sbjct: 326 IYTGRLKFFDEQKNYGFIVMD---EDKSDIFVHLDDLQKAGVTKEVLKTAKQGSQIRFQF 382

Query: 56  ---YVQNDANGKYSAENLKLV 73
                         A  LKL+
Sbjct: 383 NCMVYVGKYKKSRKAVELKLL 403


>gi|255965396|gb|ACU45003.1| cold shock protein [Pfiesteria piscicida]
          Length = 80

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G++K YNP KG+GFI        G DVF+H   V   G      G +V+++  ++ 
Sbjct: 1  MSCQGTVKSYNPAKGWGFI-----DYEGQDVFIH---VKDCGGAAPVAGDVVSFEVEKDP 52

Query: 61 -ANGKYSAENLK 71
             G   A ++ 
Sbjct: 53 VRGGAMKASSVT 64


>gi|284163722|ref|YP_003402001.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
 gi|284013377|gb|ADB59328.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
          Length = 64

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G++ ++N   GYGFI  E + E   DVF H   V   G  +L EG  + +D  Q   
Sbjct: 1  MAKGNVDFFNDTGGYGFIDTEDADE---DVFFHMEDV---GGPDLEEGTEIEFDIEQAPK 54

Query: 62 NGKYSAENLKLV 73
            +  A N+  +
Sbjct: 55 GPR--ATNVTRL 64


>gi|5714743|gb|AAD48060.1|AF171925_1 cold shock protein A [Rhodococcus sp. 5/14]
          Length = 57

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
          WYN DKG+G ITP+   +   D F+H +A+ S 
Sbjct: 4  WYNADKGFGCITPD---DGSKDCFVHFTALRSE 33


>gi|297709000|ref|XP_002831236.1| PREDICTED: cold shock domain-containing protein C2-like isoform 1
           [Pongo abelii]
          Length = 222

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 139 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 193

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 194 QKFQAVEVVL 203


>gi|119580846|gb|EAW60442.1| cold shock domain containing C2, RNA binding [Homo sapiens]
          Length = 222

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 139 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 193

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 194 QKFQAVEVVL 203


>gi|76802455|ref|YP_327463.1| cold shock protein [Natronomonas pharaonis DSM 2160]
 gi|76558320|emb|CAI49909.1| probable cold shock protein [Natronomonas pharaonis DSM 2160]
          Length = 68

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G + ++N   GYGFI T +G  +  +DVF H   V   G  +LTEG  V +D  ++ 
Sbjct: 1  MANGKVDFFNDTGGYGFISTDDGDLDDDEDVFFHMEDV---GGEDLTEGTEVEFDI-ESS 56

Query: 61 ANGKYSAENLKL 72
            G  +A  ++L
Sbjct: 57 PKGPRAANVVRL 68


>gi|6114756|emb|CAA62001.2| PIPPin protein [Rattus norvegicus]
          Length = 227

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 144 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 198

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 199 QKFQAVEVVL 208


>gi|298113034|gb|ADI58623.1| AsuR4 [Streptomyces nodosus subsp. asukaensis]
          Length = 141

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59
          +  G +  ++  +GYGFI+P+     G+DVFLH +   +  + +     G  V ++    
Sbjct: 1  MVSGRVVRFDGTRGYGFISPDH---GGEDVFLHVNDMLIPESYVHT---GTAVEFEIEDG 54

Query: 60 DANGKYSAENLKLVPK 75
          D   K S+  L   P 
Sbjct: 55 DRGLKASSVRLAEGPD 70


>gi|257454036|ref|ZP_05619310.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
 gi|257448514|gb|EEV23483.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus
          SK60]
          Length = 213

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          ++G I  +  DKG+GFI    +      +F H S   +     L E   V ++  Q   +
Sbjct: 4  YQGKIIRWQDDKGFGFIEQTDNNWQDPAIFFHISEYRANQRPVLNE--AVVFEIGQG-RD 60

Query: 63 GKYSAENLK 71
          GK  A N++
Sbjct: 61 GKPCAVNVQ 69


>gi|86133588|ref|ZP_01052170.1| conserved hypothetical protein [Polaribacter sp. MED152]
 gi|85820451|gb|EAQ41598.1| conserved hypothetical protein [Polaribacter sp. MED152]
          Length = 150

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V +G + +++  KG+GFI     +++G+  F H S +    +  + E   VT++  +   
Sbjct: 88  VRKGKVNFFDSSKGFGFII---DSDNGEKYFTHVSGL----IDTIAENDKVTFELEKGMR 140

Query: 62  NGKYSAENLKLV 73
               +A  +K V
Sbjct: 141 G--MNAVKVKKV 150


>gi|313205948|ref|YP_004045125.1| colD-shock DNA-binding protein family [Riemerella anatipestifer DSM
           15868]
 gi|312445264|gb|ADQ81619.1| cold-shock DNA-binding protein family [Riemerella anatipestifer DSM
           15868]
 gi|315022261|gb|EFT35289.1| cold-shock DNA-binding domain protein [Riemerella anatipestifer
           RA-YM]
 gi|325336612|gb|ADZ12886.1| cold shock protein, putative DNA-binding protein [Riemerella
           anatipestifer RA-GD]
          Length = 145

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           ++G++ +YN +KGYGFI    S ES   +F+H + ++      L +   V+Y+  +    
Sbjct: 83  NKGTVTFYNEEKGYGFINDHRSKES---IFVHANQLS----EVLKKDDKVSYE-KEKGPK 134

Query: 63  GKYSAENLKL 72
           G  +   +K+
Sbjct: 135 GYVATNVIKI 144


>gi|91094659|ref|XP_972255.1| PREDICTED: similar to CG9705 CG9705-PA [Tribolium castaneum]
 gi|270016464|gb|EFA12910.1| hypothetical protein TcasGA2_TC006980 [Tribolium castaneum]
          Length = 121

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
           G IK +  +KG+GFITPE   +  +D+F+H S +    +     G  V Y          
Sbjct: 44  GEIKSFCREKGHGFITPE---DGSEDIFVHISDIEDEYIP--IPGDRVKYQLCPIPPKFE 98

Query: 64  KYSAENLKLV 73
           K+ A ++ +V
Sbjct: 99  KHQAVHVHIV 108


>gi|325108943|ref|YP_004270011.1| cold-shock DNA-binding protein family [Planctomyces brasiliensis
          DSM 5305]
 gi|324969211|gb|ADY59989.1| cold-shock DNA-binding protein family [Planctomyces brasiliensis
          DSM 5305]
          Length = 66

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G IK    DKG+GFI  +       D+F H SA+       L  GQ V Y+  +   
Sbjct: 1  MPEGKIKKLVADKGFGFIQGDRG-----DLFFHLSALQDFQFEALQVGQAVNYEEEEGPK 55

Query: 62 NGKYSAENLKLV 73
            +  A ++ +V
Sbjct: 56 GPR--AVSVMVV 65


>gi|145284582|gb|ABP52038.1| cold shock protein [Psychrobacter sp. BJ3]
          Length = 27

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N +KG+GFI P+       DVF+H
Sbjct: 1  GLVKWFNAEKGFGFIAPDSGD---PDVFVH 27


>gi|158315982|ref|YP_001508490.1| cold-shock DNA-binding domain-containing protein [Frankia sp.
          EAN1pec]
 gi|158111387|gb|ABW13584.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec]
          Length = 146

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQND 60
          +  G +  ++  +GYGF+ P   ++ G+DVFLH + +      +L   G ++ ++  ++D
Sbjct: 1  MSTGKVLRFDHVRGYGFLAP---SDGGEDVFLHANDLLVE--KSLVVPGVVMEFEVEESD 55

Query: 61 ANGKYSAENL 70
             K SA  +
Sbjct: 56 RGRKASAARI 65


>gi|196051108|gb|ACG68722.1| cold shock protein [uncultured bacterium]
          Length = 39

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
          VF+H  A+   G  +LTEGQ V Y  V+        AE++
Sbjct: 1  VFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG--LQAEDV 38


>gi|239981577|ref|ZP_04704101.1| putative DNA binding protein [Streptomyces albus J1074]
          Length = 159

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G I  ++  +GYGFI P    E G+DVF+H + +          G+ V + + +  
Sbjct: 1  MLKTGKILRFDEVRGYGFIVP---NEGGEDVFMHANDLVDEKYL-YQSGREVEF-FEEMG 55

Query: 61 ANGKYSAENLKLVPKSS 77
            G   A  ++LV +SS
Sbjct: 56 EKGP-KASQIRLVYRSS 71


>gi|118615949|ref|YP_904281.1| DNA-binding protein [Mycobacterium ulcerans Agy99]
 gi|118568059|gb|ABL02810.1| DNA-binding protein [Mycobacterium ulcerans Agy99]
          Length = 135

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL--TEGQLVTYDYVQ 58
          M   G I  ++  +GYGFI P+     G+DVFLH + +       L    G  V++D  +
Sbjct: 1  MRGTGRIVRFDDVRGYGFIAPDS---GGEDVFLHANDLD---FDRLLAKRGTRVSFDI-E 53

Query: 59 NDANGKYSAENL 70
          +   GK++   L
Sbjct: 54 DGPRGKFATAVL 65


>gi|296207137|ref|XP_002750515.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus]
          Length = 209

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 5   GSIKWYNPDKGYGF---ITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           G  KW N   G+GF   I   G   +   +VF+H+  +   G  +L EG+ + + + ++ 
Sbjct: 42  GICKWLNVHMGFGFLSMIARAGDALNPPVEVFVHQGKLHMKGFRSLKEGEAMEFTFKKSA 101

Query: 61  AN 62
             
Sbjct: 102 KG 103


>gi|164518139|emb|CAP49095.1| putative integron gene cassette protein [uncultured bacterium]
          Length = 185

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%)

Query: 1  MVHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G++ KW N D+G+GFI   G+ E    +F+H S         +  GQLV++     
Sbjct: 6  MQIHGNVTKW-NDDRGFGFIEAAGTREE---LFVHISEFPRGERPQV--GQLVSFTVAV- 58

Query: 60 DANGKYSAENLKL 72
            +GK  A  + L
Sbjct: 59 -KDGKKRAIAVSL 70


>gi|30248726|ref|NP_840796.1| cold shock DNA-binding domain-containing protein [Nitrosomonas
          europaea ATCC 19718]
 gi|30180321|emb|CAD84628.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718]
          Length = 204

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQN 59
          M ++G I  +  DKG+GF+TP G    G+ +F+H ++ +S       EG +LVTY+    
Sbjct: 1  MRYQGRITTWKDDKGFGFVTPNG---GGEQIFVHINSFSSRQRR--PEGNELVTYELTV- 54

Query: 60 DANGKYSAENLKLVPKS 76
          D+ G+  A+ +  V + 
Sbjct: 55 DSKGRSQAKAVAFVGEQ 71


>gi|322369014|ref|ZP_08043581.1| cold-shock DNA-binding domain protein [Haladaptatus
          paucihalophilus DX253]
 gi|320551745|gb|EFW93392.1| cold-shock DNA-binding domain protein [Haladaptatus
          paucihalophilus DX253]
          Length = 64

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G + ++N   GYGFI  + + E   DVF H   V   G  +LTEG  + +D  Q   
Sbjct: 1  MANGKVDFFNDTGGYGFIETDDADE---DVFFHMEDV---GGEDLTEGTEIEFDIEQAPK 54

Query: 62 NGKYSAENL 70
            +  A+N+
Sbjct: 55 GPR--AKNV 61


>gi|217971871|ref|YP_002356622.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS223]
 gi|217497006|gb|ACK45199.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223]
          Length = 219

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          ++ RG  ++W N +KG+GFI PE    +  DVF+H S +       +  G  + +   + 
Sbjct: 2  LMDRGVLVRW-NDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILFQ-TEV 56

Query: 60 DANGKYSAE 68
            +GK  A 
Sbjct: 57 QNDGKRKAV 65


>gi|312129178|ref|YP_003996518.1| cold-shock DNA-binding protein family [Leadbetterella byssophila
           DSM 17132]
 gi|311905724|gb|ADQ16165.1| cold-shock DNA-binding protein family [Leadbetterella byssophila
           DSM 17132]
          Length = 146

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 10/72 (13%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             +G + ++  DKGYGFIT E + E    +F+H + +       L EG  VT++  ++D 
Sbjct: 83  RKKGVVAYF-SDKGYGFITEERTKER---IFVHTNDLKVE----LREGDKVTFETERSDR 134

Query: 62  NGKYSAENLKLV 73
                A N++ V
Sbjct: 135 G--LKAINVEKV 144


>gi|259507144|ref|ZP_05750044.1| cold-shock domain family protein [Corynebacterium efficiens
          YS-314]
 gi|259165267|gb|EEW49821.1| cold-shock domain family protein [Corynebacterium efficiens
          YS-314]
          Length = 122

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KWY+P++G+GF+    S   G+D F+    V   G+  L +GQ + +D+          
Sbjct: 1  MKWYDPERGFGFV----SNPGGEDCFVG-KQVLPKGVTELHQGQRIEFDFAAGRKG--PQ 53

Query: 67 AENLKLVP 74
          A  +K++ 
Sbjct: 54 ALRVKVLE 61


>gi|183980071|ref|YP_001848362.1| DNA-binding protein [Mycobacterium marinum M]
 gi|183173397|gb|ACC38507.1| DNA-binding protein [Mycobacterium marinum M]
          Length = 135

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL--TEGQLVTYDYVQ 58
          M   G I  ++  +GYGFI P+     G+DVFLH + +       L    G  V++D  +
Sbjct: 1  MRGTGRIVRFDDVRGYGFIAPDS---GGEDVFLHANDLD---FDRLLAKRGTRVSFDI-E 53

Query: 59 NDANGKYSAENL 70
          +   GK++   L
Sbjct: 54 DGPRGKFATAVL 65


>gi|218458034|ref|ZP_03498125.1| cold-shock DNA-binding domain protein [Rhizobium etli Kim 5]
          Length = 57

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGS 24
          +  G++KW+N  KG+GFI P+  
Sbjct: 35 MSTGTVKWFNATKGFGFIQPDDG 57


>gi|326799533|ref|YP_004317352.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
 gi|326550297|gb|ADZ78682.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21]
          Length = 59

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 11/68 (16%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQNDANGKY 65
          +K++N  KG+GFITP   T  G + F+H     S GL + + +   V++D  Q       
Sbjct: 2  VKFFNETKGFGFITP---TYGGHEFFVH-----SPGLKDRIRKNDDVSFDVEQGQKG--L 51

Query: 66 SAENLKLV 73
          +A ++KL+
Sbjct: 52 NAVDVKLI 59


>gi|213966424|ref|ZP_03394602.1| cold-shock DNA-binding domain protein [Corynebacterium amycolatum
          SK46]
 gi|213950944|gb|EEB62348.1| cold-shock DNA-binding domain protein [Corynebacterium amycolatum
          SK46]
          Length = 143

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++WY+ D+G+GF+    S   G+DV++ ++ V   G+  L  GQ + YDY   D 
Sbjct: 1  MPIGKVRWYDKDRGFGFV----SNPDGEDVYIGKN-VLPKGVEELVTGQRLEYDYA--DG 53

Query: 62 NGKYSAENLKLVPK 75
               A  +K++ +
Sbjct: 54 RPGPQALRIKVLDE 67


>gi|86130352|ref|ZP_01048952.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
 gi|85819027|gb|EAQ40186.1| cold shock domain protein CspD [Dokdonia donghaensis MED134]
          Length = 148

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60
           +  G +++++  KG+GFI    + E     F+H S  +       L EG  V+Y+  +  
Sbjct: 84  IKTGFVEFFDSSKGFGFIKDADTPEK---YFVHISEVIEGE----LKEGNKVSYEIERGQ 136

Query: 61  AN 62
             
Sbjct: 137 KG 138


>gi|160873811|ref|YP_001553127.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS195]
 gi|160859333|gb|ABX47867.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195]
 gi|315266036|gb|ADT92889.1| Excalibur domain protein [Shewanella baltica OS678]
          Length = 219

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          ++ RG  ++W N +KG+GFI PE    +  DVF+H S +       +  G  + +   + 
Sbjct: 2  LMDRGVLVRW-NDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILFQ-TEV 56

Query: 60 DANGKYSAE 68
            +GK  A 
Sbjct: 57 QNDGKRKAV 65


>gi|126343688|ref|XP_001363729.1| PREDICTED: similar to Cold shock domain containing C2, RNA binding
           [Monodelphis domestica]
          Length = 154

 Score = 52.3 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE  TE   D+F+H S +     +   EG  VTY        N
Sbjct: 71  KGVCKQFSRSQGHGFITPENGTE---DIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 125

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 126 QKFQAVEVVL 135


>gi|269914112|ref|NP_663448.2| cold shock domain-containing protein C2 [Mus musculus]
 gi|26324880|dbj|BAC26194.1| unnamed protein product [Mus musculus]
 gi|74208901|dbj|BAE21201.1| unnamed protein product [Mus musculus]
          Length = 154

 Score = 52.3 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 71  KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKICPIPPKN 125

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 126 QKFQAVEVVL 135


>gi|46580267|ref|YP_011075.1| cold shock domain-containing protein [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|46449684|gb|AAS96334.1| cold shock domain protein [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|311233750|gb|ADP86604.1| Excalibur domain protein [Desulfovibrio vulgaris RCH1]
          Length = 178

 Score = 52.3 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 12/73 (16%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN---LTE-GQLVTYDY 56
          M  +G I  +N ++G+GFI+P+   +    VF H SA       +   L E G+ V Y  
Sbjct: 1  MFDQGKIAQWNDERGFGFISPD---DGSPRVFAHISA-----FRSRHPLPEVGERVLYYL 52

Query: 57 VQNDANGKYSAEN 69
                G  ++  
Sbjct: 53 GPPSPKGSRASVV 65


>gi|257051748|ref|YP_003129581.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
          12940]
 gi|256690511|gb|ACV10848.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
          12940]
          Length = 64

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G + +++   GYGFI    + ++ DDVF H   V+     +L EGQ + +D  Q + 
Sbjct: 1  MANGKVDFFHDTGGYGFIE---TADADDDVFFHMEDVSG---PDLEEGQDIEFDIEQAE- 53

Query: 62 NGKYSAENLK 71
           G  +   ++
Sbjct: 54 KGPRATNVVR 63


>gi|21224745|ref|NP_630524.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|4158185|emb|CAA22748.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
          Length = 162

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59
          +  G +  ++  +GYGFI PE   + G+DVFLH +   +    + +   G +V ++    
Sbjct: 21 MVAGRVVRFDGTRGYGFIAPE---DGGEDVFLHVNDLLIPEESVRS---GLVVEFEVESG 74

Query: 60 DANGKYS 66
          +   K S
Sbjct: 75 ERGLKAS 81


>gi|145284586|gb|ABP52040.1| cold shock protein [Psychrobacter sp. BJ3]
 gi|145284602|gb|ABP52048.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 27

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G++KW+N  KG+GFI  +     G DVF+H
Sbjct: 1  GTVKWFNEAKGFGFIAQD---NGGQDVFVH 27


>gi|255025943|ref|ZP_05297929.1| major cold-shock protein [Listeria monocytogenes FSL J2-003]
          Length = 28

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 4/32 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFL 33
          +  G++KW+N +KG+GFI  E     GDDVF+
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVE----GGDDVFV 28


>gi|32129843|sp|Q91YQ3|CSDC2_MOUSE RecName: Full=Cold shock domain-containing protein C2; AltName:
           Full=RNA-binding protein PIPPin
 gi|16359300|gb|AAH16109.1| Cold shock domain containing C2, RNA binding [Mus musculus]
 gi|148672599|gb|EDL04546.1| cold shock domain containing C2, RNA binding [Mus musculus]
          Length = 154

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 71  KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKICPIPPKN 125

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 126 QKFQAVEVVL 135


>gi|195016139|ref|XP_001984348.1| GH16406 [Drosophila grimshawi]
 gi|193897830|gb|EDV96696.1| GH16406 [Drosophila grimshawi]
          Length = 1062

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 3    HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             R ++   +  KG +GF+  E   E G  +F H S V  + +  L  G  V +  V N  
Sbjct: 946  KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGSTVA-LHPGDTVEFSVVTNQR 999

Query: 62   NGKYSAENL 70
            NGK SA N+
Sbjct: 1000 NGKSSACNV 1008



 Score = 40.7 bits (95), Expect = 0.076,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 206 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 261

Query: 76  S 76
            
Sbjct: 262 E 262


>gi|292655387|ref|YP_003535284.1| cold shock protein [Haloferax volcanii DS2]
 gi|291371490|gb|ADE03717.1| cold shock protein [Haloferax volcanii DS2]
          Length = 64

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G + ++    GYGFI  +   +    VF H   +      +L EGQ V +D  + D 
Sbjct: 1  MAKGKVAFFKSSGGYGFIETDDHDDD---VFFHMEDIEG---PDLEEGQEVEFDIEEADK 54

Query: 62 NGKYSAENLKLV 73
            +  A N+  +
Sbjct: 55 GPR--ATNVTRL 64


>gi|152986409|ref|YP_001348696.1| hypothetical protein PSPA7_3336 [Pseudomonas aeruginosa PA7]
 gi|150961567|gb|ABR83592.1| hypothetical protein PSPA7_3336 [Pseudomonas aeruginosa PA7]
          Length = 238

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          WY+ DKG+GFI P      G+++FLH SA        L  G  V +     DA G+  AE
Sbjct: 21 WYD-DKGFGFIQP---KAGGEEIFLHISAFRGD-RRPLQ-GDQVWF-LASQDARGRLRAE 73

Query: 69 NLKL 72
            +L
Sbjct: 74 RARL 77


>gi|89071109|ref|ZP_01158312.1| cold shock protein CspA [Oceanicola granulosus HTCC2516]
 gi|89043357|gb|EAR49578.1| cold shock protein CspA [Oceanicola granulosus HTCC2516]
          Length = 40

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          H SAV  +GL +L + Q VT+D  +   +G+ SA NL L
Sbjct: 2  HISAVERSGLTDLRDDQKVTFDI-EPGRDGRESAVNLAL 39


>gi|92116742|ref|YP_576471.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gi|91799636|gb|ABE62011.1| putative cold-shock DNA-binding domain protein [Nitrobacter
          hamburgensis X14]
          Length = 66

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
          H SAV  AG+ +  E Q V++D V +   GK +AENL+
Sbjct: 27 HISAVERAGVSSFHEWQNVSFDIVVDRRTGKSAAENLR 64


>gi|333030557|ref|ZP_08458618.1| Cold-shock protein DNA-binding [Bacteroides coprosuis DSM 18011]
 gi|332741154|gb|EGJ71636.1| Cold-shock protein DNA-binding [Bacteroides coprosuis DSM 18011]
          Length = 147

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G + ++N  KG+GFI  + S  +    F H S         + E   VT++  Q     
Sbjct: 86  TGRVDFFNDAKGFGFIKDQASVNT---YFFHISNAPED----IKENNKVTFELEQGPRG- 137

Query: 64  KYSAENLKLV 73
             +A N+K++
Sbjct: 138 -MNAVNIKII 146


>gi|316971587|gb|EFV55344.1| tRNA-specific adenosine deaminase 2 [Trichinella spiralis]
          Length = 311

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           VH G ++++  ++G+G+ITP     +G+D+F+H S V     +   +G  VTY
Sbjct: 215 VHYGRVRYFCRERGHGYITPLDQNPAGEDIFVHISDVEGD--YAPHDGDEVTY 265


>gi|282866184|ref|ZP_06275231.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
 gi|282558968|gb|EFB64523.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE]
          Length = 143

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 20/82 (24%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHR-------SAVASAGLFNLTEGQLVTY 54
          +  G +  ++  +GYGFI PE     G+DVF+H        SAV +        G +V +
Sbjct: 1  MAAGRVIRFDGMRGYGFIAPEH---GGEDVFMHVNDLLIPESAVRA--------GLMVEF 49

Query: 55 DYVQNDANGKYSAENLKLVPKS 76
          +    D      A  ++L  ++
Sbjct: 50 EIEDGDRG--LKASEVRLASEA 69


>gi|152999199|ref|YP_001364880.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS185]
 gi|151363817|gb|ABS06817.1| putative cold-shock DNA-binding domain protein [Shewanella
          baltica OS185]
          Length = 217

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          ++ RG  ++W N +KG+GFI PE    +  DVF+H S +       +  G  + Y   + 
Sbjct: 2  LMDRGVLVRW-NDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILYQ-TEV 56

Query: 60 DANGKYSAE 68
            +GK  A 
Sbjct: 57 QNDGKRKAV 65


>gi|126175891|ref|YP_001052040.1| cold-shock DNA-binding domain-containing protein [Shewanella
          baltica OS155]
 gi|125999096|gb|ABN63171.1| cold-shock DNA-binding protein family [Shewanella baltica OS155]
          Length = 203

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          ++ RG  ++W N +KG+GFI PE    +  DVF+H S +       +  G  + +   + 
Sbjct: 2  LMDRGVLVRW-NDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILFQ-TEV 56

Query: 60 DANGKYSAE 68
            +GK  A 
Sbjct: 57 QNDGKRKAV 65


>gi|326803763|ref|YP_004321581.1| putative transcriptional repressor activity CueR [Aerococcus
          urinae ACS-120-V-Col10a]
 gi|326650444|gb|AEA00627.1| putative transcriptional repressor activity CueR [Aerococcus
          urinae ACS-120-V-Col10a]
          Length = 67

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G +K Y+  +GYGFI          +VF+HR+A+ +A    +    L+ ++      
Sbjct: 1  MYQGILKSYDEKRGYGFIQVLHPYFE-KEVFIHRTALQAADYEKMLVNDLLAFEIAWGQR 59

Query: 62 NGKYSAENLK 71
               A N++
Sbjct: 60 G--PQAVNVQ 67


>gi|5441543|emb|CAB46826.1| DNA binding protein [Canis lupus familiaris]
          Length = 96

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYS 66
          N   GYGFI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +  G  +
Sbjct: 1  NVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVQFDVVEGE-KGAEA 56

Query: 67 AEN 69
          A  
Sbjct: 57 ANV 59


>gi|313127432|ref|YP_004037702.1| cold-shock DNA-binding protein family [Halogeometricum
          borinquense DSM 11551]
 gi|312293797|gb|ADQ68257.1| cold-shock DNA-binding protein family [Halogeometricum
          borinquense DSM 11551]
          Length = 64

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G + ++N   GYGFI  E   E   DVF H   V   G  +L EG  + ++  ++  
Sbjct: 1  MAEGKVDFFNDTGGYGFIETEDHDE---DVFFHMEDV---GGPDLEEGTEIEFEI-EDAP 53

Query: 62 NGKYSAENLKL 72
           G  +    +L
Sbjct: 54 KGPRAKNVTRL 64


>gi|125977582|ref|XP_001352824.1| GA21978 [Drosophila pseudoobscura pseudoobscura]
 gi|195169856|ref|XP_002025730.1| GL20690 [Drosophila persimilis]
 gi|54641575|gb|EAL30325.1| GA21978 [Drosophila pseudoobscura pseudoobscura]
 gi|194109223|gb|EDW31266.1| GL20690 [Drosophila persimilis]
          Length = 142

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62
            G +K ++  KG+GFI P   T  G+DVF H S +     +    G  V Y         
Sbjct: 56  TGVVKSFSRSKGHGFIIP---TAGGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPPKY 110

Query: 63  GKYSAENLKL 72
            K+ A ++++
Sbjct: 111 EKHQAVHVQI 120


>gi|317506969|ref|ZP_07964738.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
 gi|316254727|gb|EFV14028.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
          Length = 166

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS----AVASAGLFNLTEGQLVTYDYV 57
          +  G +  ++  +G+GF+ P+     G+DVF+H +    A+       L  G ++ ++  
Sbjct: 1  MSSGKLVHFDAVRGFGFVAPDV---GGEDVFIHVNDFEEAIVDE--RLLRPGAVLEFEVE 55

Query: 58 QNDANGKYSAENLKLVPKS 76
          +        A N++ V ++
Sbjct: 56 RGGRG--LKAVNVRFVREA 72


>gi|157124890|ref|XP_001660573.1| hypothetical protein AaeL_AAEL010018 [Aedes aegypti]
 gi|108873813|gb|EAT38038.1| hypothetical protein AaeL_AAEL010018 [Aedes aegypti]
          Length = 982

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF+  +   E G  +F H S V   G   L  G  V +  V N  NGK SA N
Sbjct: 866 DSVKGLFGFL--DFEVEEGKKLFFHMSEVQGGGC--LYPGDSVEFSIVTNQRNGKTSACN 921



 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S   +     L  G  V +  +Q    GK  A N+  +P 
Sbjct: 317 FGFIER---ADVVKEIFFHFS--ETDNTIELRPGDDVEF-IIQTRNQGKEVACNIARLPP 370

Query: 76  SS 77
            S
Sbjct: 371 GS 372



 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S      + +L  G  V ++   +   GK  A  +  +  
Sbjct: 159 YGFIQ---CCERQARLFFHFSQFGGT-IEHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 214

Query: 76  S 76
            
Sbjct: 215 E 215


>gi|194748709|ref|XP_001956787.1| GF10107 [Drosophila ananassae]
 gi|190624069|gb|EDV39593.1| GF10107 [Drosophila ananassae]
          Length = 1043

 Score = 51.5 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 3   HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            R ++   +  KG +GF+  E   E G  +F H S V  + +  L  G  V +  V N  
Sbjct: 927 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGSTVA-LHPGDTVEFSVVTNQR 980

Query: 62  NGKYSAENL 70
           NGK SA N+
Sbjct: 981 NGKSSACNV 989



 Score = 40.3 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 196 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 251

Query: 76  S 76
            
Sbjct: 252 E 252


>gi|170038774|ref|XP_001847223.1| cold shock domain-containing protein E1 [Culex quinquefasciatus]
 gi|167882469|gb|EDS45852.1| cold shock domain-containing protein E1 [Culex quinquefasciatus]
          Length = 954

 Score = 51.5 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV--QNDANGKYSA 67
           +  KG +GF+  +   E G  +F H S V   G  +L  G  V +  V  Q   NGK SA
Sbjct: 836 DSVKGLFGFL--DFEVEEGKKLFFHMSEVQGGG--SLYPGDSVEFSIVTNQASRNGKTSA 891

Query: 68  ENLKLVPK 75
            N+  VP 
Sbjct: 892 CNMIKVPD 899



 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S   +     L  G  V +  +Q    GK  A N+  +P 
Sbjct: 300 FGFIER---ADVVKEIFFHFS--ETDNTIELRPGDDVEF-IIQTRNQGKEVACNIARLPP 353

Query: 76  SS 77
            S
Sbjct: 354 GS 355


>gi|145284588|gb|ABP52041.1| cold shock protein [Psychrobacter sp. BJ3]
          Length = 27

 Score = 51.5 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N +KG+GFI P+       DVF+H
Sbjct: 1  GQVKWFNAEKGFGFIAPDSGD---PDVFVH 27


>gi|73959197|ref|XP_852743.1| PREDICTED: similar to calcium-regulated heat-stable protein (24kD)
           [Canis familiaris]
          Length = 224

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           V++G  K +   KG+GFITP    + G D+FLH S V     +   EG  VTY       
Sbjct: 139 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 193

Query: 61  ANGKYSAENLKL 72
            N K  A  + +
Sbjct: 194 KNEKLQAVEVVI 205


>gi|291235125|ref|XP_002737496.1| PREDICTED: calcium-regulated heat-stable protein (24kD)-like
           [Saccoglossus kowalevskii]
          Length = 130

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY-DYVQND 60
           V +G++K++   KG+GFIT   + E+ +++F+H S +    +  +  G  VTY + +   
Sbjct: 45  VKKGTVKYFCRHKGHGFITQ--AEENAEELFVHISDIEGEYIPVV--GDQVTYKECLIPP 100

Query: 61  ANGKYSAENL 70
              K  A  +
Sbjct: 101 KKTKTQAVEV 110


>gi|78048088|ref|YP_364263.1| hypothetical protein XCV2532 [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|78036518|emb|CAJ24209.1| putative membrane protein [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
          Length = 204

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  +N  KG+GF+TP G    GD  F+H SA A        +G+++TY  ++ D
Sbjct: 1  MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFARQ-TRRPRDGEIITY-AIERD 55

Query: 61 ANGKYSAENLK 71
          A+ + +A  ++
Sbjct: 56 AHKRLNATQVR 66


>gi|124505825|ref|XP_001351026.1| cold-shock protein, putative [Plasmodium falciparum 3D7]
 gi|23510669|emb|CAD49054.1| cold-shock protein, putative [Plasmodium falciparum 3D7]
          Length = 150

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 13/59 (22%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           G++  ++  KGYGFI P    + G D+F+H + +           Q  T++    +  
Sbjct: 31 TGNVIMFDKRKGYGFIKP---NDGGPDIFVHYTDIC----------QSRTFEVTNEEKK 76


>gi|327272546|ref|XP_003221045.1| PREDICTED: cold shock domain-containing protein C2-like [Anolis
           carolinensis]
          Length = 153

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE  TE   D+F+H S +     +   EG +VTY        N
Sbjct: 70  KGVCKQFSRSQGHGFITPENGTE---DIFVHVSDIEGE--YVPVEGDVVTYKICPIPPKN 124

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 125 QKFQAVEVVL 134


>gi|157963490|ref|YP_001503524.1| cold-shock DNA-binding domain-containing protein [Shewanella
          pealeana ATCC 700345]
 gi|157848490|gb|ABV88989.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
          700345]
          Length = 188

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          ++ RG  ++W N ++G+GFI PE  T +  DVF+H SA+       +  G  + +   + 
Sbjct: 2  LMERGVLVRW-NEERGFGFIKPE--TTNAKDVFIHISALKHMARKPVV-GDQILFHS-ER 56

Query: 60 DANGKYSA 67
           A+GK  A
Sbjct: 57 QADGKLKA 64


>gi|149743340|ref|XP_001500375.1| PREDICTED: similar to RNA-binding protein pippin [Equus caballus]
          Length = 153

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 70  KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 124

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 125 QKFQAVEVVL 134


>gi|304411240|ref|ZP_07392855.1| Excalibur domain protein [Shewanella baltica OS183]
 gi|307306535|ref|ZP_07586278.1| Excalibur domain protein [Shewanella baltica BA175]
 gi|304350433|gb|EFM14836.1| Excalibur domain protein [Shewanella baltica OS183]
 gi|306910826|gb|EFN41254.1| Excalibur domain protein [Shewanella baltica BA175]
          Length = 219

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          ++ RG  ++W N +KG+GFI PE    +  DVF+H S +       +  G  + +   + 
Sbjct: 2  LMDRGVLVRW-NDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILFQ-TEV 56

Query: 60 DANGKYSAE 68
            +GK  A 
Sbjct: 57 QNDGKRKAV 65


>gi|195125563|ref|XP_002007247.1| GI12487 [Drosophila mojavensis]
 gi|193918856|gb|EDW17723.1| GI12487 [Drosophila mojavensis]
          Length = 1037

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 3   HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            R ++   +  KG +GF+  E   E G  +F H S V    +  L  G  V +  V N  
Sbjct: 921 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 974

Query: 62  NGKYSAENL 70
           NGK SA N+
Sbjct: 975 NGKSSACNV 983



 Score = 40.3 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S      + +L  G  V ++   +   GK  A  +  +  
Sbjct: 179 YGFIQ---CCERQARLFFHFSQFTGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 234

Query: 76  S 76
            
Sbjct: 235 E 235


>gi|198466716|ref|XP_002135245.1| GA23356 [Drosophila pseudoobscura pseudoobscura]
 gi|198150727|gb|EDY73872.1| GA23356 [Drosophila pseudoobscura pseudoobscura]
          Length = 1036

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 3   HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            R ++   +  KG +GF+  E   E G  +F H S V    +  L  G  V +  V N  
Sbjct: 920 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 973

Query: 62  NGKYSAENLKLV 73
           NGK SA N+  +
Sbjct: 974 NGKSSACNVVKI 985



 Score = 40.3 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 188 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 243

Query: 76  S 76
            
Sbjct: 244 E 244


>gi|281485622|ref|NP_001164013.1| cold shock domain-containing protein C2 [Rattus norvegicus]
 gi|293348837|ref|XP_001077363.2| PREDICTED: cold shock domain containing C2, RNA binding [Rattus
           norvegicus]
 gi|293360735|ref|XP_345861.4| PREDICTED: cold shock domain-containing protein C2 [Rattus
           norvegicus]
 gi|32129826|sp|Q63430|CSDC2_RAT RecName: Full=Cold shock domain-containing protein C2; AltName:
           Full=RNA-binding protein PIPPin
 gi|149065816|gb|EDM15689.1| cold shock domain containing C2, RNA binding [Rattus norvegicus]
          Length = 154

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 71  KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 125

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 126 QKFQAVEVVL 135


>gi|301787827|ref|XP_002929327.1| PREDICTED: cold shock domain-containing protein C2-like [Ailuropoda
           melanoleuca]
 gi|281340937|gb|EFB16521.1| hypothetical protein PANDA_019484 [Ailuropoda melanoleuca]
          Length = 153

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 70  KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 124

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 125 QKFQAVEVVL 134


>gi|239944867|ref|ZP_04696804.1| putative DNA binding protein [Streptomyces roseosporus NRRL
          15998]
 gi|239991333|ref|ZP_04711997.1| putative DNA binding protein [Streptomyces roseosporus NRRL
          11379]
          Length = 141

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 14/83 (16%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQNDAN 62
           G I  ++  +GYGFI P+   E  +DVF+H + +       L   G+ V Y     D  
Sbjct: 2  TGKILRFDEVRGYGFIAPD---EGDEDVFMHANDLLEEKY--LYQAGRRVEYFLESGDKG 56

Query: 63 GK--------YSAENLKLVPKSS 77
           K         +A  +  VP+SS
Sbjct: 57 PKAGEIRLVRQAAAPVSRVPRSS 79


>gi|195491191|ref|XP_002093456.1| GE21305 [Drosophila yakuba]
 gi|194179557|gb|EDW93168.1| GE21305 [Drosophila yakuba]
          Length = 1044

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 3   HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            R ++   +  KG +GF+  E   E G  +F H S V  + +  L  G  V +  V N  
Sbjct: 928 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGSTVA-LHPGDTVEFSVVTNQR 981

Query: 62  NGKYSAENL 70
           NGK SA N+
Sbjct: 982 NGKSSACNV 990



 Score = 40.3 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 203 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 258

Query: 76  S 76
            
Sbjct: 259 E 259



 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71
           +GFI      E    VF H S         L  GQ V Y   +N           AEN++
Sbjct: 780 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 835

Query: 72  LVPKSS 77
           ++PK+S
Sbjct: 836 MLPKNS 841


>gi|145537626|ref|XP_001454524.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422290|emb|CAK87127.1| unnamed protein product [Paramecium tetraurelia]
          Length = 360

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43
              G +K+++  K YGFI  +       DVF+H   +  AG+
Sbjct: 265 RETGKLKFFDEQKSYGFIVLDS---DNSDVFVHLDDLQRAGI 303


>gi|308803845|ref|XP_003079235.1| unnamed protein product [Ostreococcus tauri]
 gi|116057690|emb|CAL53893.1| unnamed protein product [Ostreococcus tauri]
          Length = 73

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 16/59 (27%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G++KW+N              +  +DVF+H+SA+   G  +  E   V ++   +   G
Sbjct: 10 GTVKWFN-------------FDGSEDVFVHQSALTMDGFRSCWE---VRHEAAHSKRRG 52


>gi|54113555|gb|AAV29411.1| NT02FT1329 [synthetic construct]
          Length = 143

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62
          +G++K+YN DKGYGFI    S ES  D F   S +       +  G   V ++  Q+   
Sbjct: 2  QGTVKFYNKDKGYGFI---YSEESEKDFF--FS-INDWKNPTVPNGSDDVEFEVAQSKKG 55

Query: 63 GKYSAENLKLVPKSSN 78
              A N+KL+  + +
Sbjct: 56 --EKAINIKLLKSAED 69


>gi|24307959|ref|NP_055275.1| cold shock domain-containing protein C2 [Homo sapiens]
 gi|297709002|ref|XP_002831237.1| PREDICTED: cold shock domain-containing protein C2-like isoform 2
           [Pongo abelii]
 gi|32129852|sp|Q9Y534|CSDC2_HUMAN RecName: Full=Cold shock domain-containing protein C2; AltName:
           Full=RNA-binding protein PIPPin
 gi|5304854|emb|CAB46024.1| cold shock domain containing C2, RNA binding [Homo sapiens]
 gi|5931606|dbj|BAA84704.1| RNA-binding protein PIPPin [Homo sapiens]
 gi|45501284|gb|AAH67113.1| CSDC2 protein [Homo sapiens]
 gi|47678445|emb|CAG30343.1| dJ347H13.2 [Homo sapiens]
 gi|57997216|emb|CAD39079.2| hypothetical protein [Homo sapiens]
 gi|109451154|emb|CAK54438.1| CSDC2 [synthetic construct]
 gi|109451732|emb|CAK54737.1| CSDC2 [synthetic construct]
 gi|190689775|gb|ACE86662.1| cold shock domain containing C2, RNA binding protein [synthetic
           construct]
 gi|190691143|gb|ACE87346.1| cold shock domain containing C2, RNA binding protein [synthetic
           construct]
 gi|306921241|dbj|BAJ17700.1| cold shock domain containing C2, RNA binding [synthetic construct]
          Length = 153

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 70  KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 124

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 125 QKFQAVEVVL 134


>gi|218892082|ref|YP_002440949.1| hypothetical protein PLES_33631 [Pseudomonas aeruginosa LESB58]
 gi|218772308|emb|CAW28090.1| hypothetical protein PLES_33631 [Pseudomonas aeruginosa LESB58]
          Length = 238

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          WY+ DKG+GFI P      G++VFLH SA          +G  V +     DA G+  AE
Sbjct: 21 WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 73

Query: 69 NLKL 72
            +L
Sbjct: 74 RARL 77


>gi|254240344|ref|ZP_04933666.1| hypothetical protein PA2G_00991 [Pseudomonas aeruginosa 2192]
 gi|126193722|gb|EAZ57785.1| hypothetical protein PA2G_00991 [Pseudomonas aeruginosa 2192]
          Length = 240

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          WY+ DKG+GFI P      G++VFLH SA          +G  V +     DA G+  AE
Sbjct: 23 WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 75

Query: 69 NLKL 72
            +L
Sbjct: 76 RARL 79


>gi|254235046|ref|ZP_04928369.1| hypothetical protein PACG_00926 [Pseudomonas aeruginosa C3719]
 gi|126166977|gb|EAZ52488.1| hypothetical protein PACG_00926 [Pseudomonas aeruginosa C3719]
          Length = 240

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          WY+ DKG+GFI P      G++VFLH SA          +G  V +     DA G+  AE
Sbjct: 23 WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 75

Query: 69 NLKL 72
            +L
Sbjct: 76 RARL 79


>gi|107101389|ref|ZP_01365307.1| hypothetical protein PaerPA_01002426 [Pseudomonas aeruginosa
          PACS2]
          Length = 227

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          WY+ DKG+GFI P      G++VFLH SA          +G  V +     DA G+  AE
Sbjct: 10 WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 62

Query: 69 NLKL 72
            +L
Sbjct: 63 RARL 66


>gi|49082146|gb|AAT50473.1| PA1960 [synthetic construct]
          Length = 241

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          WY+ DKG+GFI P      G++VFLH SA          +G  V +     DA G+  AE
Sbjct: 23 WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 75

Query: 69 NLKL 72
            +L
Sbjct: 76 RARL 79


>gi|15597156|ref|NP_250650.1| hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1]
 gi|9947958|gb|AAG05348.1|AE004622_10 hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1]
          Length = 240

 Score = 51.5 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          WY+ DKG+GFI P      G++VFLH SA          +G  V +     DA G+  AE
Sbjct: 23 WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 75

Query: 69 NLKL 72
            +L
Sbjct: 76 RARL 79


>gi|195442396|ref|XP_002068944.1| GK17751 [Drosophila willistoni]
 gi|194165029|gb|EDW79930.1| GK17751 [Drosophila willistoni]
          Length = 1053

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF+  E   E G  +F H S V    +  L  G  V +  V N  NGK SA N
Sbjct: 942 DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQRNGKSSACN 998

Query: 70  L 70
           +
Sbjct: 999 V 999



 Score = 40.3 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 211 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 266

Query: 76  S 76
            
Sbjct: 267 E 267


>gi|254369157|ref|ZP_04985169.1| hypothetical protein FTAG_00096 [Francisella tularensis subsp.
          holarctica FSC022]
 gi|157122107|gb|EDO66247.1| hypothetical protein FTAG_00096 [Francisella tularensis subsp.
          holarctica FSC022]
          Length = 143

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 9/76 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62
          +G++K+YN DKGYGFI    S ES  D F   S +       +  G   V ++  Q+  +
Sbjct: 2  QGTVKFYNKDKGYGFI---YSEESEKDFF--FS-INDWKNPTVPNGSDDVEFEVAQSKKD 55

Query: 63 GKYSAENLKLVPKSSN 78
              A N+KL+  + +
Sbjct: 56 --EKAINIKLLKSAED 69


>gi|15292067|gb|AAK93302.1| LD37025p [Drosophila melanogaster]
          Length = 806

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 3   HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            R ++   +  KG +GF+  E   E G  +F H S V    +  L  G  V +  V N  
Sbjct: 690 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 743

Query: 62  NGKYSAENL 70
           NGK SA N+
Sbjct: 744 NGKSSACNV 752



 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71
           +GFI      E    VF H S         L  GQ V Y   +N           AEN++
Sbjct: 542 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 597

Query: 72  LVPKSS 77
           ++PK+S
Sbjct: 598 MLPKNS 603


>gi|307171903|gb|EFN63545.1| Cold shock domain-containing protein E1 [Camponotus floridanus]
          Length = 885

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF+  E   + G  +F H S V       L  G  V +  V N   GK SA N
Sbjct: 770 DAVKGPFGFLAYE--VDEGKKLFFHISEVRD--HATLQPGDQVEFVLVTNQRTGKSSACN 825

Query: 70  LKLVPKSSN 78
           +  +  +  
Sbjct: 826 VTRLSDAVQ 834



 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S   S     L  G  V +  +Q   NGK  A N+  +P 
Sbjct: 285 FGFIER---ADVVKEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 338

Query: 76  SS 77
            S
Sbjct: 339 GS 340



 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 135 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKIAP 190


>gi|167622917|ref|YP_001673211.1| cold-shock DNA-binding domain-containing protein [Shewanella
          halifaxensis HAW-EB4]
 gi|167352939|gb|ABZ75552.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis
          HAW-EB4]
          Length = 209

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          ++  KG+GFI      +    VFLH SA AS G+     G  V +  V+ D  GK+ A+N
Sbjct: 15 WDDAKGFGFIQIAKQKQQ---VFLHISAFASKGIH-PQAGNRVQFHLVK-DKQGKWRADN 69

Query: 70 LKLV 73
           +L+
Sbjct: 70 AQLL 73


>gi|26987372|ref|NP_742797.1| cold shock DNA-binding domain-containing protein [Pseudomonas
          putida KT2440]
 gi|24982026|gb|AAN66261.1|AE016254_8 cold shock DNA-binding domain protein [Pseudomonas putida KT2440]
          Length = 246

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++ + P+KG+GFI  +     G   F+H   V       L +GQ V ++  Q   
Sbjct: 11 LTSGVVRSFMPEKGFGFIQGD----DGRSYFVHIKNVEGG---ELFDGQSVAFE-GQPGP 62

Query: 62 NGKYSAENLKLVPKS 76
           G  +   +K+ P  
Sbjct: 63 KGYRA---VKVKPGE 74


>gi|221330989|ref|NP_001137912.1| upstream of N-ras, isoform B [Drosophila melanogaster]
 gi|220902519|gb|ACL83267.1| upstream of N-ras, isoform B [Drosophila melanogaster]
          Length = 1057

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 3    HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             R ++   +  KG +GF+  E   E G  +F H S V    +  L  G  V +  V N  
Sbjct: 941  KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 994

Query: 62   NGKYSAENL 70
            NGK SA N+
Sbjct: 995  NGKSSACNV 1003



 Score = 40.3 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 198 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 253

Query: 76  S 76
            
Sbjct: 254 E 254



 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71
           +GFI      E    VF H S         L  GQ V Y   +N           AEN++
Sbjct: 793 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 848

Query: 72  LVPKSS 77
           ++PK+S
Sbjct: 849 MLPKNS 854


>gi|90075002|dbj|BAE87181.1| unnamed protein product [Macaca fascicularis]
          Length = 153

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 70  KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 124

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 125 QKFQAVEVVL 134


>gi|47026413|gb|AAT08469.1| RE66582p [Drosophila melanogaster]
          Length = 1057

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 3    HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
             R ++   +  KG +GF+  E   E G  +F H S V    +  L  G  V +  V N  
Sbjct: 941  KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 994

Query: 62   NGKYSAENL 70
            NGK SA N+
Sbjct: 995  NGKSSACNV 1003



 Score = 40.3 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 198 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 253

Query: 76  S 76
            
Sbjct: 254 E 254



 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71
           +GFI      E    VF H S         L  GQ V Y   +N           AEN++
Sbjct: 793 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 848

Query: 72  LVPKSS 77
           ++PKSS
Sbjct: 849 MLPKSS 854


>gi|24660935|ref|NP_648226.2| upstream of N-ras, isoform A [Drosophila melanogaster]
 gi|23093910|gb|AAF50415.2| upstream of N-ras, isoform A [Drosophila melanogaster]
          Length = 1039

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 3   HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            R ++   +  KG +GF+  E   E G  +F H S V    +  L  G  V +  V N  
Sbjct: 923 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 976

Query: 62  NGKYSAENL 70
           NGK SA N+
Sbjct: 977 NGKSSACNV 985



 Score = 40.3 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 198 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 253

Query: 76  S 76
            
Sbjct: 254 E 254



 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71
           +GFI      E    VF H S         L  GQ V Y   +N           AEN++
Sbjct: 775 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 830

Query: 72  LVPKSS 77
           ++PK+S
Sbjct: 831 MLPKNS 836


>gi|195326013|ref|XP_002029725.1| GM24938 [Drosophila sechellia]
 gi|194118668|gb|EDW40711.1| GM24938 [Drosophila sechellia]
          Length = 1036

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 3   HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            R ++   +  KG +GF+  E   E G  +F H S V    +  L  G  V +  V N  
Sbjct: 920 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 973

Query: 62  NGKYSAENL 70
           NGK SA N+
Sbjct: 974 NGKSSACNV 982



 Score = 40.3 bits (94), Expect = 0.096,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 195 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 250

Query: 76  S 76
            
Sbjct: 251 E 251



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71
           +GFI      E    VF H S         L  GQ V Y   +N           AEN++
Sbjct: 772 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 827

Query: 72  LVPKSS 77
           ++PK+S
Sbjct: 828 MLPKNS 833


>gi|307213494|gb|EFN88903.1| Cold shock domain-containing protein E1 [Harpegnathos saltator]
          Length = 887

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF+  E   + G  +F H S V       L  G  V +  V N   GK SA N
Sbjct: 772 DAVKGPFGFLAYE--VDEGKKLFFHISEVRD--HATLQPGDSVEFVLVTNQRTGKSSACN 827

Query: 70  LKLVPKSSN 78
           +  +  +  
Sbjct: 828 VTRLSDAVQ 836



 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S   S     L  G  V +  +Q   NGK  A N+  +P 
Sbjct: 286 FGFIER---ADVVKEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 339

Query: 76  SS 77
            S
Sbjct: 340 GS 341



 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 136 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKIAP 191


>gi|194865892|ref|XP_001971655.1| GG15082 [Drosophila erecta]
 gi|190653438|gb|EDV50681.1| GG15082 [Drosophila erecta]
          Length = 1035

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 3   HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
            R ++   +  KG +GF+  E   E G  +F H S V    +  L  G  V +  V N  
Sbjct: 919 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 972

Query: 62  NGKYSAENL 70
           NGK SA N+
Sbjct: 973 NGKSSACNV 981



 Score = 40.3 bits (94), Expect = 0.098,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 194 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 249

Query: 76  S 76
            
Sbjct: 250 E 250



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71
           +GFI      E    VF H S         L  GQ V Y   +N           AEN++
Sbjct: 771 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 826

Query: 72  LVPKSS 77
           ++PK+S
Sbjct: 827 MLPKNS 832


>gi|163755666|ref|ZP_02162785.1| hypothetical protein KAOT1_05877 [Kordia algicida OT-1]
 gi|161324579|gb|EDP95909.1| hypothetical protein KAOT1_05877 [Kordia algicida OT-1]
          Length = 154

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V +G + +++  KG+GFI      E+ +  F H S +    +  + E   V+++      
Sbjct: 90  VRKGKVSFFDSSKGFGFII---DAENNEKYFTHVSGI----IDTIVENDKVSFELEMGKK 142

Query: 62  NGKYSAENLKLVPK 75
               +A  + L+ +
Sbjct: 143 G--MNAVKVTLIKE 154


>gi|262373694|ref|ZP_06066972.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262311447|gb|EEY92533.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 205

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ DKGYGFI P    +    VFLH    A  G   L  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFD-DKGYGFIQPNDKHKDR--VFLHIKDFARTGPRPLV-GCALEYLVILD 56

Query: 60 DANGKYSAENLKLVPKSS 77
          +  G+Y A+ +  +  + 
Sbjct: 57 E-RGRYRAQQVSYLKAAQ 73


>gi|145284600|gb|ABP52047.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 26

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 4/30 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+NPDKG+GFIT    +E G DVF+H
Sbjct: 1  GKVKWFNPDKGFGFIT----SEDGQDVFVH 26


>gi|126726386|ref|ZP_01742227.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2150]
 gi|126704249|gb|EBA03341.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium
          HTCC2150]
          Length = 178

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +KW++  KG+GF+  +   E G D+ LH + + + G  ++ +   +    VQ+ A G 
Sbjct: 18 GKVKWFDQAKGFGFVVSD---EGGSDILLHANVLRNFGQSSIADATPLVI-AVQDTARGI 73

Query: 65 YSAENLKL 72
           + E + +
Sbjct: 74 QATEVISI 81



 Score = 51.1 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            IKW++  KG+GF        S DD+F+H   +   GL +L  G+ +      +   GK 
Sbjct: 111 RIKWFDKSKGFGF---ANEFGSSDDIFVHVETLRRYGLADLMPGEAICLKIA-DGERGKM 166

Query: 66  SAEN 69
           + E 
Sbjct: 167 AVEV 170


>gi|56708242|ref|YP_170138.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|110670713|ref|YP_667270.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
          tularensis FSC198]
 gi|134302159|ref|YP_001122128.1| cold shock DNA -binding domain-containing protein [Francisella
          tularensis subsp. tularensis WY96-3418]
 gi|254370729|ref|ZP_04986734.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|56604734|emb|CAG45805.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|110321046|emb|CAL09188.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
          tularensis FSC198]
 gi|134049936|gb|ABO47007.1| cold shock DNA -binding domain protein [Francisella tularensis
          subsp. tularensis WY96-3418]
 gi|151568972|gb|EDN34626.1| cold shock protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|282159468|gb|ADA78859.1| cold shock DNA -binding domain protein [Francisella tularensis
          subsp. tularensis NE061598]
          Length = 143

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62
          +G++K+YN DKGYGFI    S ES  D F    ++       +  G   V ++  Q+   
Sbjct: 2  QGTVKFYNKDKGYGFI---YSEESEKDFFF---SINDWKNPTVPNGSDDVEFEVAQSKKG 55

Query: 63 GKYSAENLKLVPKSSN 78
              A N+KL+  + +
Sbjct: 56 --EKAINIKLLKSAED 69


>gi|117921981|ref|YP_871173.1| cold-shock DNA-binding protein family protein [Shewanella sp.
          ANA-3]
 gi|117614313|gb|ABK49767.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3]
          Length = 192

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 5/39 (12%)

Query: 2  VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39
          + RG  ++W N +KG+GFI PE     G DVF+H + + 
Sbjct: 1  MERGILVRW-NDEKGFGFIQPEQQ---GKDVFIHITVLK 35


>gi|255011084|ref|ZP_05283210.1| putative DNA-binding protein [Bacteroides fragilis 3_1_12]
 gi|313148891|ref|ZP_07811084.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137658|gb|EFR55018.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 146

 Score = 51.1 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           H G I+++N  KGYGF+     T++G+  F H S+  +     + EG  VT++  +    
Sbjct: 83  HMGRIEYFNAAKGYGFV---KDTDNGEKYFFHISSAPA----TIAEGDRVTFEIERGMRG 135

Query: 63  GKYSAENLKLV 73
              +A  + +V
Sbjct: 136 --MNAVRISVV 144


>gi|294649475|ref|ZP_06726899.1| cold-shock DNA-binding protein family protein [Acinetobacter
          haemolyticus ATCC 19194]
 gi|292824645|gb|EFF83424.1| cold-shock DNA-binding protein family protein [Acinetobacter
          haemolyticus ATCC 19194]
          Length = 231

 Score = 51.1 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G IK YN D+G+GFI  E       D+F H +     G      G+LV +  V++ 
Sbjct: 1  MFLTGKIKNYNSDRGFGFIEVEHDRS---DIFFHITDFPKIG-GEPKTGELVKFLIVED- 55

Query: 61 ANGKYSAENL 70
            GK+ A ++
Sbjct: 56 -KGKFKATDI 64


>gi|300709891|ref|YP_003735705.1| cold-shock DNA-binding domain protein [Halalkalicoccus jeotgali
          B3]
 gi|299123574|gb|ADJ13913.1| cold-shock DNA-binding domain protein [Halalkalicoccus jeotgali
          B3]
          Length = 68

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G + ++N   GYGFI T +G  +  +DVF H   V   G  +LTEG  V +D  ++ 
Sbjct: 1  MANGKVDFFNDTGGYGFISTDDGDLDDDEDVFFHMEDV---GGEDLTEGTEVEFDI-ESS 56

Query: 61 ANGKYSAENLK 71
            G  +A  ++
Sbjct: 57 PKGPRAANVVR 67


>gi|145542504|ref|XP_001456939.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424753|emb|CAK89542.1| unnamed protein product [Paramecium tetraurelia]
          Length = 429

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 12/85 (14%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYD- 55
           ++ G +K+++  K YGFI  +   E   D+F+H   +  AG     L     G  + +  
Sbjct: 340 IYTGRLKFFDEQKNYGFIVMD---EDKSDIFVHLDDLQKAGVTKEVLKTAKLGSQIRFQF 396

Query: 56  ---YVQNDANGKYSAENLKLVPKSS 77
                         A  LKL+    
Sbjct: 397 NCMVYVGKYKRSRKAVELKLLSNQQ 421


>gi|91079915|ref|XP_967163.1| PREDICTED: similar to AGAP004937-PA [Tribolium castaneum]
 gi|270003264|gb|EEZ99711.1| hypothetical protein TcasGA2_TC002472 [Tribolium castaneum]
          Length = 910

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK-YSAENLKLV 73
           G+GFI    +T+   +VF H S        +L  GQ V Y+      +G   SAEN+K++
Sbjct: 644 GFGFIE---TTQHDKEVFFHFSNFEGEP-NSLELGQEVEYNLGSRGNSGTCSSAENVKII 699

Query: 74  PKSS 77
           PK +
Sbjct: 700 PKGT 703



 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 139 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASAVTKIAP 194

Query: 76  S 76
            
Sbjct: 195 E 195



 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF+  E   E G  +F H + V      NL  G  V +  V N  +GK SA +
Sbjct: 795 DAIKGHFGFLAYE--VEEGKKLFFHMTEVKDN--VNLQVGDTVEFVLVTNHRSGKSSACS 850

Query: 70  LKLVPK 75
           +  V  
Sbjct: 851 VVKVSD 856


>gi|292654154|ref|YP_003534052.1| cold shock protein [Haloferax volcanii DS2]
 gi|291369791|gb|ADE02019.1| cold shock protein [Haloferax volcanii DS2]
          Length = 68

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G + ++N   GYGFI T +G  +  +DVF H   V      +LTEG  V +D  ++ 
Sbjct: 1  MAHGKVDFFNDTGGYGFISTDDGDLDDDEDVFFHMEDVGGD---DLTEGTEVEFDI-ESS 56

Query: 61 ANGKYSAENLK 71
            G  +A  ++
Sbjct: 57 PKGPRAANVVR 67


>gi|302542842|ref|ZP_07295184.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC
          53653]
 gi|302460460|gb|EFL23553.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC
          53653]
          Length = 136

 Score = 50.7 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQN 59
          M   G I  ++  +GYGFI P+   + G+DVF+H + +      +L   G  V +     
Sbjct: 1  MTTTGKILRFDEFRGYGFIAPD---DGGEDVFMHANDLLDE--KHLFQPGSKVRFIPEYG 55

Query: 60 DANGKYSAENLKLVPKSS 77
          D   K  A  ++++ + +
Sbjct: 56 DKGPK--ASEVRILERGA 71


>gi|225011114|ref|ZP_03701577.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
           MS024-3C]
 gi|225004748|gb|EEG42707.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium
           MS024-3C]
          Length = 152

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G + +++  KG+GFI    S E     F+H S +    +  + E   V+++  +   
Sbjct: 90  LRTGKVSFFDASKGFGFIIDAVSQEKH---FVHVSGL----IDEIMENDKVSFELERGQK 142

Query: 62  N 62
            
Sbjct: 143 G 143


>gi|259479879|tpe|CBF70506.1| TPA: cold shock NA binding domain protein (JCVI) [Aspergillus
          nidulans FGSC A4]
          Length = 111

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G++KWYN  +G+GFIT +   E    + L R ++       L EG  V+Y+ V
Sbjct: 49 GTVKWYNDAQGFGFITSDFGGE----LILRRQSITEHTQR-LKEGMKVSYEAV 96


>gi|68006761|ref|XP_670490.1| cold-shock protein [Plasmodium berghei strain ANKA]
 gi|56485793|emb|CAH94919.1| cold-shock protein, putative [Plasmodium berghei]
          Length = 84

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
           G++  ++  KGYGFI P    + G DVF+H + +
Sbjct: 32 TGNVIKFDKRKGYGFIKP---NDGGPDVFVHYTEI 63


>gi|290463071|gb|ADD24583.1| Cold shock domain-containing protein CG9705 [Lepeophtheirus
           salmonis]
          Length = 179

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
           +H G +K++   +G+GFITP        + F+H S +   
Sbjct: 84  LHEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGE 123


>gi|269961075|ref|ZP_06175444.1| hypothetical protein VME_18280 [Vibrio harveyi 1DA3]
 gi|269834294|gb|EEZ88384.1| hypothetical protein VME_18280 [Vibrio harveyi 1DA3]
          Length = 911

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 15/73 (20%)

Query: 5  GSIKWY---NPDKG----YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
          G++ W+   N   G    +GFIT    T     VF+H++ V   G+  L EG++V ++ +
Sbjct: 10 GTVDWFGGKNKRTGRNNHFGFITIHDYTS----VFVHKNEVNG-GV--LEEGEVVVFELI 62

Query: 58 QNDANGKYSAENL 70
          + D N K SA+N+
Sbjct: 63 K-DVNNKLSAKNV 74


>gi|225712740|gb|ACO12216.1| Cold shock domain-containing protein C2 [Lepeophtheirus salmonis]
 gi|225713682|gb|ACO12687.1| Cold shock domain-containing protein C2 [Lepeophtheirus salmonis]
 gi|290561012|gb|ADD37908.1| Cold shock domain-containing protein CG9705 [Lepeophtheirus
           salmonis]
          Length = 188

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
           +H G +K++   +G+GFITP        + F+H S +   
Sbjct: 84  LHEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGE 123


>gi|225712200|gb|ACO11946.1| Cold shock domain-containing protein C2 [Lepeophtheirus salmonis]
          Length = 188

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
           +H G +K++   +G+GFITP        + F+H S +   
Sbjct: 84  LHEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGE 123


>gi|229523137|ref|ZP_04412546.1| hypothetical protein VIF_003708 [Vibrio cholerae TM 11079-80]
 gi|229339833|gb|EEO04846.1| hypothetical protein VIF_003708 [Vibrio cholerae TM 11079-80]
          Length = 196

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G +   N  KGYGFI+   +      VFLH S V S           V ++  + D 
Sbjct: 1  MIKGKVVERNDSKGYGFIS---ALNGELRVFLHVSTVQSKSRR-PKVDDEVEFEVNE-DQ 55

Query: 62 NGKYSAENLKLV 73
           G+Y+A N+ ++
Sbjct: 56 KGRYNATNVTIL 67


>gi|222480048|ref|YP_002566285.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
          ATCC 49239]
 gi|222452950|gb|ACM57215.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi
          ATCC 49239]
          Length = 68

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 2  VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G + ++N   GYGFI T +G  +  +DVF H   V   G  +L EGQ V +D   + 
Sbjct: 1  MANGKVDFFNDTGGYGFISTDDGDLDDDEDVFFHMEDV---GGPDLEEGQEVEFDIESSP 57

Query: 61 ANGKYSAENLK 71
             +  A NL 
Sbjct: 58 KGPR--ATNLT 66


>gi|197336120|ref|YP_002156153.1| cold-shock DNA-binding domain protein [Vibrio fischeri MJ11]
 gi|197317610|gb|ACH67057.1| cold-shock DNA-binding domain protein [Vibrio fischeri MJ11]
          Length = 195

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +  +N  KGYGFI+   +      VFLH S + +        G  V++D  + +  G
Sbjct: 2  KGRVVEWNDSKGYGFIS---ALNGELKVFLHISKLKNKNRR-PKIGDEVSFDINE-EIKG 56

Query: 64 KYSAENLKLV 73
          +++A N+ +V
Sbjct: 57 RFNANNVSIV 66


>gi|313669281|ref|YP_004049565.1| cold-shock dna-binding domain protein [Neisseria lactamica
          ST-640]
 gi|313006743|emb|CBN88213.1| putative cold-shock dna-binding domain protein [Neisseria
          lactamica 020-06]
          Length = 191

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 9/75 (12%)

Query: 4  RGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQNDA 61
          +G  ++W + DKGYGFI  E        +F H S  +       L E   V+++ V +D 
Sbjct: 2  KGKIVRW-HDDKGYGFIRTESGEGE---IFCHISDFLQRNPRPGLDE--QVSFEVV-SDG 54

Query: 62 NGKYSAENLKLVPKS 76
           G++SA+ ++ + + 
Sbjct: 55 KGRFSAKQIRYLNRE 69


>gi|288918018|ref|ZP_06412376.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
 gi|288350536|gb|EFC84755.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f]
          Length = 142

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQND 60
          +  G +  ++  +GYGFI P   ++ G+DVFLH + +      +L   G ++ +D   +D
Sbjct: 1  MSTGKVLRFDHVRGYGFIAP---SDGGEDVFLHANDLLVE--KSLVVPGVVMEFDVEDSD 55

Query: 61 ANGKYS 66
             K S
Sbjct: 56 RGRKAS 61


>gi|311255011|ref|XP_001928274.2| PREDICTED: cold shock domain-containing protein C2-like [Sus
           scrofa]
          Length = 153

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
           +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 70  KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 124

Query: 63  GKYSAENLKL 72
            K+ A  + L
Sbjct: 125 QKFQAVEVVL 134


>gi|288575211|ref|ZP_05976526.2| cold shock domain protein [Neisseria mucosa ATCC 25996]
 gi|288568179|gb|EFC89739.1| cold shock domain protein [Neisseria mucosa ATCC 25996]
          Length = 221

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 13/74 (17%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL----TEGQLVTYDY 56
          M H G+I  +N ++ +G I  E     G ++F   SA        L     EGQ V+++ 
Sbjct: 1  MRHFGTIIRWNDNRRFGAIREENM---GKEIFAPLSA-----FTTLPHPPAEGQRVSFEI 52

Query: 57 VQNDANGKYSAENL 70
          ++    G+  AEN+
Sbjct: 53 IKG-RRGRDEAENI 65


>gi|289665743|ref|ZP_06487324.1| integral membrane protein [Xanthomonas campestris pv. vasculorum
          NCPPB702]
 gi|289671247|ref|ZP_06492322.1| integral membrane protein [Xanthomonas campestris pv. musacearum
          NCPPB4381]
          Length = 204

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  +N  KG+GF+TP G    GD  F+H SA A        +G+++TY  ++ D
Sbjct: 1  MRYQGRLSDWNDHKGFGFVTPNG---GGDRAFVHISAFAQQSRR-PRDGEIITY-AIERD 55

Query: 61 ANGKYSAENLK 71
          A  + +A  ++
Sbjct: 56 AQKRLNATQVR 66


>gi|293610661|ref|ZP_06692961.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827005|gb|EFF85370.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 209

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ +KGYGFI P+ + +    VFLH    A  G   +  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYRVILD 56

Query: 60 DANGKYSAENLKLVPKSS 77
          +  G++ A+ +  +  S 
Sbjct: 57 E-RGRFRAQQVTYLKASQ 73


>gi|294664904|ref|ZP_06730221.1| integral membrane protein [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 10535]
 gi|292605335|gb|EFF48669.1| integral membrane protein [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 10535]
          Length = 206

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  +N  KG+GF+TP G    GD  F+H SA A        +G+++TY   ++ 
Sbjct: 3  MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQ-TRRPRDGEIITYAIERDA 58

Query: 61 ANGKYSAEN 69
               +A+ 
Sbjct: 59 HKRLNAAQV 67


>gi|71909055|ref|YP_286642.1| cold-shock protein, DNA-binding:protein of unknown function
          DUF1294 [Dechloromonas aromatica RCB]
 gi|71848676|gb|AAZ48172.1| Cold-shock protein, DNA-binding:Protein of unknown function
          DUF1294 [Dechloromonas aromatica RCB]
          Length = 206

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G I  +  D+GYGFITP G    G+ VFLH  A        + E ++VTY+  Q D
Sbjct: 1  MRLQGRITSWKDDQGYGFITPNG---GGNPVFLHIKAFTRRQPRPVGE-EIVTYEL-QQD 55

Query: 61 ANGKYSAENLKLV 73
            G++ AE+++ V
Sbjct: 56 KRGRWRAESVEFV 68


>gi|257051473|ref|YP_003129306.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
          12940]
 gi|256690236|gb|ACV10573.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
          12940]
          Length = 78

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G + ++N   GYGFI T +G  +  +DVF H   V   G  +LTEG  V +D  ++ 
Sbjct: 11 MANGKVDFFNDTGGYGFISTDDGDLDEDEDVFFHMEDV---GGEDLTEGTEVEFDI-ESS 66

Query: 61 ANGKYSAENLK 71
            G  +A  ++
Sbjct: 67 PKGPRAANLVR 77


>gi|124006449|ref|ZP_01691282.1| cold shock protein, putative DNA-binding protein [Microscilla
           marina ATCC 23134]
 gi|123987862|gb|EAY27542.1| cold shock protein, putative DNA-binding protein [Microscilla
           marina ATCC 23134]
          Length = 150

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 9/71 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V +G + ++N DKGYGFI    + E    +F+H + V    L ++ E  +VTY+ V    
Sbjct: 87  VRKGIVTYFNDDKGYGFIKDSKTKEK---IFVHINNV----LEDIKENNVVTYEVVMGQK 139

Query: 62  NGKYSAENLKL 72
               +A  +K+
Sbjct: 140 G--PAATEVKV 148


>gi|145284594|gb|ABP52044.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 27

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KG+GFI  +     G DVF+H
Sbjct: 1  GKVKWFNEAKGFGFIAQD---NGGQDVFVH 27


>gi|325123771|gb|ADY83294.1| hypothetical protein BDGL_002708 [Acinetobacter calcoaceticus
          PHEA-2]
          Length = 209

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ +KGYGFI P+ + +    VFLH    A  G   +  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYRVILD 56

Query: 60 DANGKYSAENLKLVPKSS 77
          +  G++ A+ +  +  S 
Sbjct: 57 E-RGRFRAQQVTYLKASQ 73


>gi|309359008|emb|CAP33297.2| CBR-CEY-2 protein [Caenorhabditis briggsae AF16]
          Length = 265

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
          +G +KWY+  + YGFI+     +   D+F+H++A+A +
Sbjct: 62 QGKVKWYSVLRRYGFISR---NDGEKDIFVHQTAIAKS 96


>gi|325926682|ref|ZP_08187995.1| putative membrane protein [Xanthomonas perforans 91-118]
 gi|325542917|gb|EGD14367.1| putative membrane protein [Xanthomonas perforans 91-118]
          Length = 204

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  +N  KG+GF+TP G    GD  F+H SA A        +G+++TY  ++ D
Sbjct: 1  MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQ-TRRPRDGEIITY-AIERD 55

Query: 61 ANGKYSAENLK 71
          A+ + +A  ++
Sbjct: 56 AHKRLNATQVR 66


>gi|294625429|ref|ZP_06704060.1| integral membrane protein [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 11122]
 gi|292600252|gb|EFF44358.1| integral membrane protein [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 11122]
          Length = 204

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  +N  KG+GF+TP G    GD  F+H SA A        +G+++TY  ++ D
Sbjct: 1  MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQ-TRRPRDGEIITY-AIERD 55

Query: 61 ANGKYSAENLK 71
          A+ + +A  ++
Sbjct: 56 AHKRLNATQVR 66


>gi|21243068|ref|NP_642650.1| integral membrane protein [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21108581|gb|AAM37186.1| integral membrane protein [Xanthomonas axonopodis pv. citri str.
          306]
          Length = 206

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  +N  KG+GF+TP G    GD  F+H SA A        +G+++TY  ++ D
Sbjct: 3  MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQ-TRRPRDGEIITY-AIERD 57

Query: 61 ANGKYSAENLK 71
          A+ + +A  ++
Sbjct: 58 AHKRLNATQVR 68


>gi|145539083|ref|XP_001455236.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423035|emb|CAK87839.1| unnamed protein product [Paramecium tetraurelia]
          Length = 425

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYD- 55
           ++ G +K+++  K YGFI  +   +   D+F+H   +  AG     L    +G L+ +  
Sbjct: 336 IYTGRLKFFDEQKNYGFIVMD---DDKSDIFVHLDDLQKAGVTKEVLKTSKQGSLLRFQF 392

Query: 56  ---YVQNDANGKYSAENLKLVPKSS 77
                         A  LKL+    
Sbjct: 393 NCMVYVGKYKKSRKAVELKLLANQQ 417


>gi|145489436|ref|XP_001430720.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397820|emb|CAK63322.1| unnamed protein product [Paramecium tetraurelia]
          Length = 154

 Score = 50.3 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43
          +  +G +K+Y+  K YGF+  +   E G DVF+H   + +AG+
Sbjct: 60 IRQKGRMKFYDDAKKYGFLVLD---EDGTDVFVHYDDLQAAGI 99


>gi|120555876|ref|YP_960227.1| hypothetical protein Maqu_2966 [Marinobacter aquaeolei VT8]
 gi|120325725|gb|ABM20040.1| protein of unknown function DUF1294 [Marinobacter aquaeolei VT8]
          Length = 214

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +  +N  KG+GFITPE     G+ +F H SA    G  +    + V Y     D
Sbjct: 1  MNQKGLLTSWNDAKGFGFITPE---NGGERLFAHISAYQGRGRPS--ASRKVVY-AQTKD 54

Query: 61 ANGKYSA 67
            G+  A
Sbjct: 55 EKGRLRA 61


>gi|218463829|ref|ZP_03503920.1| cold-shock DNA-binding domain-containing protein [Rhizobium etli
          Kim 5]
          Length = 54

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESG 28
          M   G++K++N DKG+GFI PE    +G
Sbjct: 1  MAETGTVKFFNTDKGFGFIKPEPGAAAG 28


>gi|296389633|ref|ZP_06879108.1| hypothetical protein PaerPAb_15856 [Pseudomonas aeruginosa PAb1]
          Length = 84

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          WY+ DKG+GFI P      G++VFLH SA          +G  V +     DA G+  AE
Sbjct: 5  WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 57

Query: 69 NLKL 72
            +L
Sbjct: 58 RARL 61


>gi|313202310|ref|YP_004040968.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. MP688]
 gi|312441626|gb|ADQ85732.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688]
          Length = 201

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL-VTYDYVQN 59
          M ++G I  +   +G+GFITP G    G+ VFLH SA +        EG   V+Y+    
Sbjct: 1  MRYQGRITTWKDKQGFGFITPNG---GGEPVFLHISAFSHRKRR--PEGDELVSYERTL- 54

Query: 60 DANGKYSAENLKLV 73
          DA G+  A  +  V
Sbjct: 55 DAKGRPQALKVAFV 68


>gi|227514815|ref|ZP_03944864.1| cold shock protein Csp [Lactobacillus fermentum ATCC 14931]
 gi|227086805|gb|EEI22117.1| cold shock protein Csp [Lactobacillus fermentum ATCC 14931]
          Length = 70

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + + +IK Y+P KG+G+IT   + + G DV+ HR A+       + +GQ V    VQ   
Sbjct: 1  MIQATIKSYDPTKGWGYIT---TPQDG-DVYFHRRAIEGRSRVPIQKGQAVEMVIVQGQ- 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGPQAAHV 63


>gi|260663603|ref|ZP_05864492.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
 gi|260551829|gb|EEX24944.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
          Length = 70

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + + +IK Y+P KG+G+IT   + + G DV+ HR A+       + +GQ V    VQ   
Sbjct: 1  MIQATIKSYDPTKGWGYIT---TPQDG-DVYFHRRAIEGRSRVPIQKGQAVEMVIVQGQ- 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGPQAAHV 63


>gi|71896273|ref|NP_001026089.1| cold shock domain-containing protein E1 [Gallus gallus]
 gi|60098943|emb|CAH65302.1| hypothetical protein RCJMB04_16d21 [Gallus gallus]
          Length = 794

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 683 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 733



 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|60682910|ref|YP_213054.1| cold shock-like protein [Bacteroides fragilis NCTC 9343]
 gi|60494344|emb|CAH09140.1| cold shock-like protein [Bacteroides fragilis NCTC 9343]
          Length = 69

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G I+++N  KGYGF+      ++G+  F H S+  +     + EG  VT++  +     
Sbjct: 7  MGRIEYFNAAKGYGFV---KDADNGEKYFFHISSAPA----TIAEGDRVTFEIERGMRG- 58

Query: 64 KYSAENLKLV 73
            +A  + +V
Sbjct: 59 -MNAVRISIV 67


>gi|301164374|emb|CBW23932.1| putative cold-shock-like protein [Bacteroides fragilis 638R]
          Length = 69

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G I+++N  KGYGF+     T+ G+  F H S+  +     + EG  VT++  +     
Sbjct: 7  MGRIEYFNAAKGYGFV---KDTDCGEKYFFHISSAPA----TIAEGDRVTFEIERGMRG- 58

Query: 64 KYSAENLKLV 73
            +A  + +V
Sbjct: 59 -MNAVRISIV 67


>gi|255018523|ref|ZP_05290649.1| major cold-shock protein [Listeria monocytogenes FSL F2-515]
          Length = 27

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVF 32
          +  G++KW+N +KG+GFI  E     GDDVF
Sbjct: 1  MQTGTVKWFNSEKGFGFIEVE----GGDDVF 27


>gi|148675659|gb|EDL07606.1| cold shock domain containing E1, RNA binding, isoform CRA_b [Mus
           musculus]
          Length = 854

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 252 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 305

Query: 76  SS 77
            +
Sbjct: 306 GT 307



 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 741 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 791



 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 92  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 147

Query: 76  S 76
            
Sbjct: 148 E 148


>gi|145284598|gb|ABP52046.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 26

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 4/30 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+NPDKG+GFIT    +E G DVF+H
Sbjct: 1  GPVKWFNPDKGFGFIT----SEDGQDVFVH 26


>gi|5714745|gb|AAD48061.1|AF171926_1 cold shock protein 7.4 [Rhodococcus sp. 7/1]
          Length = 57

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
          WYN +KG+G +TP+   +   D F+H +A+ S 
Sbjct: 4  WYNAEKGFGCLTPD---DGSKDCFVHFTALRSE 33


>gi|297261183|ref|XP_001100705.2| PREDICTED: cold shock domain-containing protein C2-like [Macaca
          mulatta]
          Length = 116

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62
          +G  K ++  +G+GFITPE      +D+F+H S +     +   EG  VTY        N
Sbjct: 33 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 87

Query: 63 GKYSAENLKL 72
           K+ A  + L
Sbjct: 88 QKFQAVEVVL 97


>gi|297518568|ref|ZP_06936954.1| cold shock protein CspE [Escherichia coli OP50]
          Length = 31

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 3/30 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFL 33
          +G++KW+N  KG+GFITPE   +   DVF+
Sbjct: 5  KGNVKWFNESKGFGFITPE---DGSKDVFV 31


>gi|145284580|gb|ABP52037.1| cold shock protein [Psychrobacter sp. BJ3]
          Length = 27

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KG+GFI  +     G DVF+H
Sbjct: 1  GLVKWFNEAKGFGFIAQD---NGGQDVFVH 27


>gi|91791805|ref|YP_561456.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217]
 gi|91713807|gb|ABE53733.1| cold-shock DNA-binding protein family [Shewanella denitrificans
          OS217]
          Length = 239

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 14/77 (18%)

Query: 2  VHRGS-IKWYNPDKGYGFITPEG----------STESGDDVFLHRSAVASAGLFNLTEGQ 50
          +  G+ ++W N  KG+GFI PE                 DVF+H S +          G 
Sbjct: 1  MENGTLVRW-NEGKGFGFIQPEQKITCLLNNKPDEALNIDVFIHISTLKHMARK-PKVGD 58

Query: 51 LVTYDYVQNDANGKYSA 67
           + ++  +  A+GK  A
Sbjct: 59 NIEFER-ELQADGKVRA 74


>gi|120435929|ref|YP_861615.1| cold shock-like protein [Gramella forsetii KT0803]
 gi|117578079|emb|CAL66548.1| cold shock-like protein [Gramella forsetii KT0803]
          Length = 152

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G + +++  KG+GFI       +G+  F+H S +    +  + E   V+++  Q    
Sbjct: 92  EGKVSFFDHSKGFGFII---GKTTGEKYFVHVSGL----IDEIDENDKVSFELEQGMKG 143


>gi|40788973|dbj|BAA74908.2| KIAA0885 protein [Homo sapiens]
          Length = 826

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 225 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 278

Query: 76  SS 77
            +
Sbjct: 279 GT 280



 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 713 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 763



 Score = 36.9 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 65  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 120

Query: 76  S 76
            
Sbjct: 121 E 121


>gi|184155059|ref|YP_001843399.1| putative cold shock protein [Lactobacillus fermentum IFO 3956]
 gi|183226403|dbj|BAG26919.1| putative cold shock protein [Lactobacillus fermentum IFO 3956]
          Length = 70

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + + +IK Y+P KG+G+IT   + + G DV+ HR A+       + +GQ V    VQ   
Sbjct: 1  MIQATIKSYDPTKGWGYIT---TPQDG-DVYFHRRAIEGRSRVPIQKGQAVEMVIVQGQ- 55

Query: 62 NGKYSAEN 69
           G  +A  
Sbjct: 56 RGPQAAHV 63


>gi|260556872|ref|ZP_05829089.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          baumannii ATCC 19606]
 gi|260409478|gb|EEX02779.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          baumannii ATCC 19606]
          Length = 209

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ +KGYGFI P+ + +    VFLH    A  G   +  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLVILD 56

Query: 60 DANGKYSAENLKLVPKSS 77
          +  G++ A+ +  +  S 
Sbjct: 57 E-RGRFRAQQVTYLKASQ 73


>gi|169794439|ref|YP_001712232.1| putative cold shock protein [Acinetobacter baumannii AYE]
 gi|213158987|ref|YP_002320985.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          AB0057]
 gi|215482028|ref|YP_002324210.1| hypothetical protein ABBFA_000271 [Acinetobacter baumannii
          AB307-0294]
 gi|301345651|ref|ZP_07226392.1| hypothetical protein AbauAB0_05388 [Acinetobacter baumannii
          AB056]
 gi|301512340|ref|ZP_07237577.1| hypothetical protein AbauAB05_12182 [Acinetobacter baumannii
          AB058]
 gi|301596165|ref|ZP_07241173.1| hypothetical protein AbauAB059_10134 [Acinetobacter baumannii
          AB059]
 gi|332851923|ref|ZP_08433809.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          6013150]
 gi|332868841|ref|ZP_08438434.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          6013113]
 gi|169147366|emb|CAM85227.1| putative cold shock protein [Acinetobacter baumannii AYE]
 gi|213058147|gb|ACJ43049.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          AB0057]
 gi|213987995|gb|ACJ58294.1| conserved hypothetical protein [Acinetobacter baumannii
          AB307-0294]
 gi|332729616|gb|EGJ60953.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          6013150]
 gi|332733094|gb|EGJ64293.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          6013113]
          Length = 209

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ +KGYGFI P+ + +    VFLH    A  G   +  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLVILD 56

Query: 60 DANGKYSAENLKLVPKSS 77
          +  G++ A+ +  +  S 
Sbjct: 57 E-RGRFRAQQVTYLKASQ 73


>gi|194210948|ref|XP_001917791.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 4
           [Equus caballus]
          Length = 838

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 237 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 290

Query: 76  SS 77
            +
Sbjct: 291 GT 292



 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 725 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 775



 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 77  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 132

Query: 76  S 76
            
Sbjct: 133 E 133


>gi|194210946|ref|XP_001917794.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 5
           [Equus caballus]
 gi|194210954|ref|XP_001917800.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 6
           [Equus caballus]
          Length = 798

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735



 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|149030463|gb|EDL85500.1| upstream of NRAS, isoform CRA_b [Rattus norvegicus]
          Length = 799

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 686 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 736



 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|148232804|ref|NP_001080597.1| calcium regulated heat stable protein 1, 24kDa [Xenopus laevis]
 gi|27696469|gb|AAH44047.1| Carhsp1-prov protein [Xenopus laevis]
          Length = 100

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 3/35 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36
          V++G  K ++  KG+GFITPE   + G D+FLH S
Sbjct: 68 VYKGVCKSFSRSKGHGFITPE---DGGPDIFLHIS 99


>gi|311254534|ref|XP_003125880.1| PREDICTED: cold shock domain-containing protein E1-like isoform 2
           [Sus scrofa]
          Length = 798

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735



 Score = 36.9 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|296208928|ref|XP_002751324.1| PREDICTED: cold shock domain-containing protein E1 [Callithrix
           jacchus]
          Length = 776

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 663 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 713



 Score = 36.9 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|332237743|ref|XP_003268067.1| PREDICTED: cold shock domain-containing protein E1 isoform 2
           [Nomascus leucogenys]
 gi|332237749|ref|XP_003268070.1| PREDICTED: cold shock domain-containing protein E1 isoform 5
           [Nomascus leucogenys]
          Length = 798

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735



 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|148675658|gb|EDL07605.1| cold shock domain containing E1, RNA binding, isoform CRA_a [Mus
           musculus]
          Length = 823

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 221 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 274

Query: 76  SS 77
            +
Sbjct: 275 GT 276



 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 710 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 760



 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 92  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 147

Query: 76  S 76
            
Sbjct: 148 E 148


>gi|109014489|ref|XP_001111655.1| PREDICTED: cold shock domain-containing protein E1 isoform 1
           [Macaca mulatta]
 gi|119577020|gb|EAW56616.1| cold shock domain containing E1, RNA-binding, isoform CRA_d [Homo
           sapiens]
          Length = 844

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 243 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 296

Query: 76  SS 77
            +
Sbjct: 297 GT 298



 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 731 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 781



 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 83  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138

Query: 76  S 76
            
Sbjct: 139 E 139


>gi|56117852|ref|NP_001007554.1| cold shock domain-containing protein E1 isoform 1 [Homo sapiens]
 gi|297279637|ref|XP_002801760.1| PREDICTED: cold shock domain-containing protein E1 isoform 2
           [Macaca mulatta]
 gi|297279639|ref|XP_002801761.1| PREDICTED: cold shock domain-containing protein E1 isoform 3
           [Macaca mulatta]
 gi|332809923|ref|XP_001160588.2| PREDICTED: cold shock domain-containing protein E1 isoform 1 [Pan
           troglodytes]
 gi|332809929|ref|XP_003308349.1| PREDICTED: cold shock domain-containing protein E1 isoform 5 [Pan
           troglodytes]
 gi|12643993|sp|O75534|CSDE1_HUMAN RecName: Full=Cold shock domain-containing protein E1; AltName:
           Full=N-ras upstream gene protein; AltName: Full=Protein
           UNR
 gi|56203365|emb|CAI18825.1| cold shock domain containing E1, RNA-binding [Homo sapiens]
 gi|119577016|gb|EAW56612.1| cold shock domain containing E1, RNA-binding, isoform CRA_a [Homo
           sapiens]
 gi|119577019|gb|EAW56615.1| cold shock domain containing E1, RNA-binding, isoform CRA_a [Homo
           sapiens]
 gi|158261315|dbj|BAF82835.1| unnamed protein product [Homo sapiens]
 gi|168269522|dbj|BAG09888.1| cold shock domain-containing protein E1 [synthetic construct]
          Length = 798

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735



 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|16758924|ref|NP_446458.1| cold shock domain-containing protein E1 [Rattus norvegicus]
 gi|137045|sp|P18395|CSDE1_RAT RecName: Full=Cold shock domain-containing protein E1; AltName:
           Full=Protein UNR
 gi|57455|emb|CAA36549.1| unnamed protein product [Rattus norvegicus]
          Length = 798

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735



 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|21450287|ref|NP_659150.1| cold shock domain-containing protein E1 isoform 1 [Mus musculus]
 gi|73620670|sp|Q91W50|CSDE1_MOUSE RecName: Full=Cold shock domain-containing protein E1
 gi|16877280|gb|AAH16898.1| Cold shock domain containing E1, RNA binding [Mus musculus]
 gi|38328232|gb|AAH62097.1| Cold shock domain containing E1, RNA binding [Mus musculus]
 gi|74144797|dbj|BAE27372.1| unnamed protein product [Mus musculus]
 gi|74212957|dbj|BAE33417.1| unnamed protein product [Mus musculus]
          Length = 798

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 735



 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|332874259|ref|ZP_08442179.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          6014059]
 gi|323519689|gb|ADX94070.1| hypothetical protein ABTW07_3653 [Acinetobacter baumannii
          TCDC-AB0715]
 gi|332737543|gb|EGJ68450.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          6014059]
          Length = 209

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ +KGYGFI P+ + +    VFLH    A  G   +  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLVILD 56

Query: 60 DANGKYSAENLKLVPKSS 77
          +  G++ A+ +  +  S 
Sbjct: 57 E-RGRFRAQQVTYLKASQ 73


>gi|184159755|ref|YP_001848094.1| hypothetical protein ACICU_03438 [Acinetobacter baumannii ACICU]
 gi|239502018|ref|ZP_04661328.1| hypothetical protein AbauAB_06855 [Acinetobacter baumannii AB900]
 gi|183211349|gb|ACC58747.1| predicted membrane protein [Acinetobacter baumannii ACICU]
 gi|193078601|gb|ABO13633.2| putative cold shock protein [Acinetobacter baumannii ATCC 17978]
 gi|322509668|gb|ADX05122.1| Putative cold shock protein [Acinetobacter baumannii 1656-2]
          Length = 209

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ +KGYGFI P+ + +    VFLH    A  G   +  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLVILD 56

Query: 60 DANGKYSAENLKLVPKSS 77
          +  G++ A+ +  +  S 
Sbjct: 57 E-RGRFRAQQVTYLKASQ 73


>gi|161611902|gb|AAI55634.1| LOC557375 protein [Danio rerio]
          Length = 162

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDAN 62
           +G  K ++  +G+GFI P      GDD+F H S +     +   EG  VTY   +    N
Sbjct: 79  KGVCKDFSRSQGHGFIKP---AHGGDDIFFHISDIEGE--YVPVEGDEVTYKVCLIPPKN 133

Query: 63  GKYSAENLKL 72
            K  A  + +
Sbjct: 134 VKVQAVEVTI 143


>gi|157376410|ref|YP_001475010.1| hypothetical protein Ssed_3278 [Shewanella sediminis HAW-EB3]
 gi|157318784|gb|ABV37882.1| hypothetical protein Ssed_3278 [Shewanella sediminis HAW-EB3]
          Length = 274

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 4  RGS-IKWYNPDKGYGFITPE--GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +G+ ++W   DKG+GFI PE    T+S  D+F+H S +       L EG  + +   ++ 
Sbjct: 7  KGTLVRW-KDDKGFGFIEPETGSGTDSHTDIFIHVSQLRHMSRRPL-EGDTIFFQI-EHK 63

Query: 61 ANGKYSAENLKL 72
            GK +A   ++
Sbjct: 64 PGGKLNAIEARI 75


>gi|51476482|emb|CAH18231.1| hypothetical protein [Homo sapiens]
          Length = 844

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 243 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 296

Query: 76  SS 77
            +
Sbjct: 297 GT 298



 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 731 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 781



 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 83  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138

Query: 76  S 76
            
Sbjct: 139 E 139


>gi|28972443|dbj|BAC65675.1| mKIAA0885 protein [Mus musculus]
          Length = 822

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 221 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 274

Query: 76  SS 77
            +
Sbjct: 275 GT 276



 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 709 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 759



 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 92  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 147

Query: 76  S 76
            
Sbjct: 148 E 148


>gi|224370464|ref|YP_002604628.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
 gi|223693181|gb|ACN16464.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2]
          Length = 217

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-GQLVTYDYVQN 59
          M+ RG+I ++N  KG+GFITP      G  +F H  + +   L    E  Q +TY     
Sbjct: 1  MLRRGTITFWNDGKGFGFITP---NAGGKQLFFHIKSCSPHNLR--PEINQSITYSLSV- 54

Query: 60 DANGKYSAENLKLVPK 75
          D  G+  A  + ++P 
Sbjct: 55 DKQGRPCAVKV-ILPD 69


>gi|293357482|ref|XP_002729159.1| PREDICTED: cold shock domain containing E1, RNA binding [Rattus
           norvegicus]
          Length = 727

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 614 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 664



 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|57098733|ref|XP_533016.1| PREDICTED: similar to Cold shock domain protein E1 (UNR protein)
           (N-ras upstream gene protein) isoform 5 [Canis
           familiaris]
          Length = 844

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI          ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 243 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 296

Query: 76  SS 77
            +
Sbjct: 297 GT 298



 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 731 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 781



 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 83  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 138

Query: 76  S 76
            
Sbjct: 139 E 139


>gi|146329050|ref|YP_001209092.1| cold-shock DNA-binding domain-containing protein [Dichelobacter
          nodosus VCS1703A]
 gi|146232520|gb|ABQ13498.1| cold-shock DNA-binding domain protein [Dichelobacter nodosus
          VCS1703A]
          Length = 210

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++ ++N DKG+GFI    + E   +VF H S  A         G  V++       +G
Sbjct: 12 TGTVVYWNDDKGFGFI---DTNEKQANVFFHISHFAYENRR-PQRGDKVSFLRSPEQTSG 67

Query: 64 KYSAENLKL 72
          K SA+ + +
Sbjct: 68 KPSAKRVVI 76


>gi|145520026|ref|XP_001445874.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413340|emb|CAK78477.1| unnamed protein product [Paramecium tetraurelia]
          Length = 178

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43
             +G +K+Y+  K YGF+  +   E G DVF+H   + +AG+
Sbjct: 86  RQKGRMKFYDDAKKYGFLVLD---EDGTDVFVHYDDLQAAGI 124


>gi|319898508|ref|YP_004158601.1| cold shock protein y4cH [Bartonella clarridgeiae 73]
 gi|319402472|emb|CBI76015.1| putative cold shock protein y4cH (fragment) [Bartonella
          clarridgeiae 73]
          Length = 42

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43
          MV  G +K++N +K + FI P        D+F+H S V  +GL
Sbjct: 1  MVQTGEVKFFNNNKDFDFIKP---NNGNTDIFVHISDVQVSGL 40


>gi|170769977|ref|ZP_02904430.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
 gi|170121161|gb|EDS90092.1| cold shock DNA-binding protein [Escherichia albertii TW07627]
          Length = 70

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G GFI P   ++   +V +H SA++      L  G  V +  V N   G
Sbjct: 6  TGIVKTFDRKSGKGFIIP---SDGRKEVQVHISALSLRDAETLIPGVRVEFCRV-NGLRG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PTAANV 67


>gi|284038911|ref|YP_003388841.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
 gi|283818204|gb|ADB40042.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74]
          Length = 148

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQN 59
           +V +G + ++N  KGYGFI    + ES   +F+H       GL   + E   VT+   + 
Sbjct: 83  LVRQGVVTFFNDSKGYGFIRDLQTQES---IFVHI-----NGLKEPIGEQDKVTFS-TEM 133

Query: 60  DANGKYSAENLKLV 73
              G  + +  KLV
Sbjct: 134 TPKGPNAVDVKKLV 147


>gi|332306019|ref|YP_004433870.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|332173348|gb|AEE22602.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 236

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G I  +N DKG+GF+ P G    G+  F+H  A        + +G ++ Y+ V+ D
Sbjct: 1  MRFQGKIFNWNDDKGFGFVEPNG---GGERAFVHIKAFNPRSRRPI-DGDIIIYELVRED 56

Query: 61 ANGKYSAENLK 71
           + +  A N++
Sbjct: 57 NH-RAKAINIQ 66


>gi|194210952|ref|XP_001917787.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 2
           [Equus caballus]
          Length = 807

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 206 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 259

Query: 76  SS 77
            +
Sbjct: 260 GT 261



 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 694 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 744



 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 77  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 132

Query: 76  S 76
            
Sbjct: 133 E 133


>gi|194210950|ref|XP_001917786.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 1
           [Equus caballus]
 gi|194210956|ref|XP_001917789.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 3
           [Equus caballus]
          Length = 767

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|74180377|dbj|BAE32354.1| unnamed protein product [Mus musculus]
          Length = 767

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 41.9 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|51476573|emb|CAH18269.1| hypothetical protein [Homo sapiens]
          Length = 813

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 212 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 265

Query: 76  SS 77
            +
Sbjct: 266 GT 267



 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 750



 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 83  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138

Query: 76  S 76
            
Sbjct: 139 E 139


>gi|311254536|ref|XP_003125879.1| PREDICTED: cold shock domain-containing protein E1-like isoform 1
           [Sus scrofa]
          Length = 767

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|149030462|gb|EDL85499.1| upstream of NRAS, isoform CRA_a [Rattus norvegicus]
          Length = 768

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 655 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 705



 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|117646050|emb|CAL38492.1| hypothetical protein [synthetic construct]
          Length = 767

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|117644482|emb|CAL37736.1| hypothetical protein [synthetic construct]
          Length = 767

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|197100292|ref|NP_001126684.1| cold shock domain-containing protein E1 [Pongo abelii]
 gi|55732349|emb|CAH92877.1| hypothetical protein [Pongo abelii]
          Length = 767

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|332809925|ref|XP_003308347.1| PREDICTED: cold shock domain-containing protein E1 isoform 3 [Pan
           troglodytes]
          Length = 813

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 212 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 265

Query: 76  SS 77
            +
Sbjct: 266 GT 267



 Score = 42.2 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 750



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 83  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138

Query: 76  S 76
            
Sbjct: 139 E 139


>gi|332237745|ref|XP_003268068.1| PREDICTED: cold shock domain-containing protein E1 isoform 3
           [Nomascus leucogenys]
          Length = 813

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 212 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 265

Query: 76  SS 77
            +
Sbjct: 266 GT 267



 Score = 42.2 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 750



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 83  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138

Query: 76  S 76
            
Sbjct: 139 E 139


>gi|332237741|ref|XP_003268066.1| PREDICTED: cold shock domain-containing protein E1 isoform 1
           [Nomascus leucogenys]
 gi|332237747|ref|XP_003268069.1| PREDICTED: cold shock domain-containing protein E1 isoform 4
           [Nomascus leucogenys]
          Length = 767

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.2 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|296394224|ref|YP_003659108.1| cold-shock DNA-binding domain-containing protein [Segniliparus
          rotundus DSM 44985]
 gi|296181371|gb|ADG98277.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM
          44985]
          Length = 167

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 11/76 (14%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS----AVASAGLFNLTEGQLVTYDY 56
          M   G +  ++  +G+GF+ P+     G+DVF+H +    AVA      L  G ++ +D 
Sbjct: 1  MTSSGKLVHFDAVRGFGFVAPDA---GGEDVFIHVNDFEEAVADE--RLLRPGAVLEFDV 55

Query: 57 VQNDANGKYSAENLKL 72
           +        A +++L
Sbjct: 56 ERGGRG--LKAVHVRL 69


>gi|194473720|ref|NP_001123995.1| cold shock domain-containing protein E1 isoform 3 [Homo sapiens]
 gi|297279641|ref|XP_002801762.1| PREDICTED: cold shock domain-containing protein E1 isoform 4
           [Macaca mulatta]
          Length = 813

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 212 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 265

Query: 76  SS 77
            +
Sbjct: 266 GT 267



 Score = 42.2 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 750



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 83  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138

Query: 76  S 76
            
Sbjct: 139 E 139


>gi|240255574|ref|NP_001155326.1| cold shock domain-containing protein E1 isoform 2 [Mus musculus]
 gi|20987700|gb|AAH29688.1| Csde1 protein [Mus musculus]
 gi|21619512|gb|AAH31404.1| Csde1 protein [Mus musculus]
 gi|74139915|dbj|BAE31796.1| unnamed protein product [Mus musculus]
 gi|74150943|dbj|BAE27606.1| unnamed protein product [Mus musculus]
 gi|74196030|dbj|BAE30568.1| unnamed protein product [Mus musculus]
 gi|74198827|dbj|BAE30641.1| unnamed protein product [Mus musculus]
 gi|74204741|dbj|BAE35437.1| unnamed protein product [Mus musculus]
 gi|74207308|dbj|BAE30839.1| unnamed protein product [Mus musculus]
 gi|74219259|dbj|BAE26763.1| unnamed protein product [Mus musculus]
 gi|74220216|dbj|BAE31288.1| unnamed protein product [Mus musculus]
          Length = 767

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 41.9 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|74192859|dbj|BAE34939.1| unnamed protein product [Mus musculus]
          Length = 767

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 41.9 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI       +   +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQCSERQAT---LFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|117645778|emb|CAL38356.1| hypothetical protein [synthetic construct]
          Length = 767

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|117645156|emb|CAL38044.1| hypothetical protein [synthetic construct]
          Length = 767

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|56117850|ref|NP_009089.4| cold shock domain-containing protein E1 isoform 2 [Homo sapiens]
 gi|297279643|ref|XP_002801763.1| PREDICTED: cold shock domain-containing protein E1 isoform 5
           [Macaca mulatta]
 gi|297279645|ref|XP_002801764.1| PREDICTED: cold shock domain-containing protein E1 isoform 6
           [Macaca mulatta]
 gi|332809921|ref|XP_003308346.1| PREDICTED: cold shock domain-containing protein E1 isoform 2 [Pan
           troglodytes]
 gi|332809927|ref|XP_003308348.1| PREDICTED: cold shock domain-containing protein E1 isoform 4 [Pan
           troglodytes]
 gi|21619086|gb|AAH32446.1| Cold shock domain containing E1, RNA-binding [Homo sapiens]
 gi|56203366|emb|CAI18826.1| cold shock domain containing E1, RNA-binding [Homo sapiens]
 gi|117646066|emb|CAL38500.1| hypothetical protein [synthetic construct]
 gi|119577017|gb|EAW56613.1| cold shock domain containing E1, RNA-binding, isoform CRA_b [Homo
           sapiens]
 gi|119577022|gb|EAW56618.1| cold shock domain containing E1, RNA-binding, isoform CRA_b [Homo
           sapiens]
 gi|119577023|gb|EAW56619.1| cold shock domain containing E1, RNA-binding, isoform CRA_b [Homo
           sapiens]
          Length = 767

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|10433950|dbj|BAB14073.1| unnamed protein product [Homo sapiens]
 gi|10433969|dbj|BAB14080.1| unnamed protein product [Homo sapiens]
          Length = 767

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|260550786|ref|ZP_05824993.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          sp. RUH2624]
 gi|260406096|gb|EEW99581.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          sp. RUH2624]
          Length = 209

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ +KGYGFI P+ + +    VFLH    A  G   +  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLVILD 56

Query: 60 DANGKYSAENLKLVPKSS 77
          +  G++ A+ +  +  S 
Sbjct: 57 E-RGRFRAQQVTYLKASQ 73


>gi|145504068|ref|XP_001438006.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405167|emb|CAK70609.1| unnamed protein product [Paramecium tetraurelia]
          Length = 433

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYD- 55
           ++ G +K+++  K YGFI  +   E   D+F+H   +  AG     L    +G L+ +  
Sbjct: 344 IYTGRLKFFDEQKNYGFIVMD---EDKSDIFVHLDDLQKAGVTKEVLKTSKQGLLLRFQF 400

Query: 56  ---YVQNDANGKYSAENLKLVPKSS 77
                         A  LKL+    
Sbjct: 401 NCMVYVGKYKKSRKAVELKLLANQQ 425


>gi|262370718|ref|ZP_06064043.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          johnsonii SH046]
 gi|262314518|gb|EEY95560.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          johnsonii SH046]
          Length = 209

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDD-VFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
          M  +G  ++W++ +KGYGFI P    +   D VFLH    A  G   +  G  + Y+ + 
Sbjct: 1  MRDQGRLVEWFD-EKGYGFIQP---NDDSKDRVFLHIKDFARQGPRPIL-GCALEYNVLV 55

Query: 59 NDANGKYSAENLKLVPKSS 77
           DA G+Y A+ +  +  S 
Sbjct: 56 -DAQGRYRAQQVSYLKASQ 73


>gi|111221830|ref|YP_712624.1| putative DNA binding protein [Frankia alni ACN14a]
 gi|111149362|emb|CAJ61051.1| putative DNA binding protein [Frankia alni ACN14a]
          Length = 137

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQND 60
          +  G +  ++  +GYGFI P   ++ GDD+FLH + +      NL   G  + ++  + +
Sbjct: 1  MSTGKVLRFDHVRGYGFIAP---SDGGDDIFLHANDLLVE--KNLVVPGTFMEFEVEEGE 55

Query: 61 ANGKYS 66
             K S
Sbjct: 56 RGLKAS 61


>gi|73981073|ref|XP_856513.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 7 [Canis
           familiaris]
 gi|73981081|ref|XP_856679.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 11 [Canis
           familiaris]
          Length = 813

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI          ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 212 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 265

Query: 76  SS 77
            +
Sbjct: 266 GT 267



 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 750



 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 83  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 138

Query: 76  S 76
            
Sbjct: 139 E 139


>gi|73981071|ref|XP_856473.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 6 [Canis
           familiaris]
 gi|73981079|ref|XP_856637.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 10 [Canis
           familiaris]
 gi|73981085|ref|XP_856758.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 13 [Canis
           familiaris]
          Length = 767

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI          ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|254670958|emb|CBA07630.1| hypothetical cold-shock protein [Neisseria meningitidis alpha153]
          Length = 204

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDANGKY 65
          +KW + +KGYGFI  +G      ++F H S  +       + E   V ++ V +D  G++
Sbjct: 19 VKW-DDEKGYGFIRIDG---GNKEIFCHISDFSPRNPRPEINE--AVGFEVV-SDGKGRF 71

Query: 66 SAENLKLVPKS 76
          SA+ ++ + + 
Sbjct: 72 SAKQIRYLNRE 82


>gi|293350407|ref|XP_002727448.1| PREDICTED: cold shock domain-containing protein E1-like, partial
           [Rattus norvegicus]
          Length = 742

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735



 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|53714928|ref|YP_100920.1| putative DNA-binding protein [Bacteroides fragilis YCH46]
 gi|52217793|dbj|BAD50386.1| putative DNA-binding protein [Bacteroides fragilis YCH46]
          Length = 146

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G I+++N  KGYGF+      ++G+  F H S+  +     + EG  VT++  +     
Sbjct: 84  MGRIEYFNAAKGYGFV---KDADNGEKYFFHISSAPA----TIAEGDRVTFEIERGMRG- 135

Query: 64  KYSAENLKLV 73
             +A  + +V
Sbjct: 136 -MNAVRISIV 144


>gi|53804338|ref|YP_114060.1| cold-shock DNA-binding domain-containing protein [Methylococcus
           capsulatus str. Bath]
 gi|53758099|gb|AAU92390.1| cold-shock DNA-binding domain protein [Methylococcus capsulatus
           str. Bath]
          Length = 305

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G++  +  +KG+GFITP+     GD+ F H S +      ++  G  ++++  +ND    
Sbjct: 239 GTVLSFFHEKGFGFITPD---NGGDNFFFHVSDLTGIEASDVCAGLRISFNAGRNDKG-- 293

Query: 65  YSAENLKLV 73
            +A N++ +
Sbjct: 294 LAAHNIRKL 302


>gi|145284590|gb|ABP52042.1| cold shock protein [Psychrobacter sp. BJ3]
 gi|145284592|gb|ABP52043.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 27

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KG+GFI  +     G DVF+H
Sbjct: 1  GPVKWFNEAKGFGFIAQD---NGGQDVFVH 27


>gi|196019570|ref|XP_002119003.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens]
 gi|190577377|gb|EDV18511.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens]
          Length = 203

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGD 29
          M   G++KW+NP+KGYGF+  E   +   
Sbjct: 1  MKVTGTVKWFNPEKGYGFVKQENGNKENK 29


>gi|254000354|ref|YP_003052417.1| cold-shock DNA-binding domain-containing protein [Methylovorus
          sp. SIP3-4]
 gi|253987033|gb|ACT51890.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4]
          Length = 201

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 12/84 (14%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL-VTYDYVQN 59
          M ++G I  +   +G+GFITP G    GD VFLH SA +        EG   VTY+    
Sbjct: 1  MRYQGRITTWKDKQGFGFITPNG---GGDPVFLHISAFSHRKRR--PEGDELVTYERTL- 54

Query: 60 DANGKYSAENLKLV-----PKSSN 78
          DA G+  A  +  V     P SS 
Sbjct: 55 DAKGRPHALKVAFVGHRPAPASSQ 78


>gi|19354137|gb|AAH24826.1| Csde1 protein [Mus musculus]
          Length = 689

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 88  FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 141

Query: 76  SS 77
            +
Sbjct: 142 GT 143



 Score = 41.5 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 576 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 626


>gi|74142169|dbj|BAE31853.1| unnamed protein product [Mus musculus]
 gi|74220547|dbj|BAE31489.1| unnamed protein product [Mus musculus]
          Length = 622

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 21 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 74

Query: 76 SS 77
           +
Sbjct: 75 GT 76



 Score = 41.5 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 509 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 559


>gi|255066450|ref|ZP_05318305.1| cold shock domain protein [Neisseria sicca ATCC 29256]
 gi|255049330|gb|EET44794.1| cold shock domain protein [Neisseria sicca ATCC 29256]
          Length = 226

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 13/74 (17%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL----TEGQLVTYDY 56
          M + G+I  +N ++ +G I  E     G +VF   SA        L     EGQ V++D 
Sbjct: 1  MRYYGTITRWNDNRQFGAIREESM---GTEVFAPLSA-----FTTLTRPPAEGQRVSFDI 52

Query: 57 VQNDANGKYSAENL 70
          V+    G+  AEN+
Sbjct: 53 VKG-RRGRDEAENI 65


>gi|253566037|ref|ZP_04843491.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945141|gb|EES85579.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 146

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G I+++N  KGYGF+      ++G+  F H S+  +     + EG  VT++  +     
Sbjct: 84  MGRIEYFNAAKGYGFV---KDADNGEKYFFHISSAPT----TIAEGDRVTFEIERGMRG- 135

Query: 64  KYSAENLKLV 73
             +A  + +V
Sbjct: 136 -MNAVRISIV 144


>gi|254381040|ref|ZP_04996405.1| hypothetical protein SSAG_00707 [Streptomyces sp. Mg1]
 gi|194339950|gb|EDX20916.1| hypothetical protein SSAG_00707 [Streptomyces sp. Mg1]
          Length = 95

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQN 59
          M   G +KW++  +G G I+ EG+   G D+    SA+    G   L +G+ V +D   +
Sbjct: 1  MSPCGVVKWFDLGRGIGLISQEGA---GPDIRAEASAIHGRDGR--LRQGEEVLFDVTLD 55

Query: 60 DANGKYSAENLK 71
           A     A+N++
Sbjct: 56 SAG--LRADNIR 65


>gi|16041096|dbj|BAB69715.1| hypothetical protein [Macaca fascicularis]
          Length = 531

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|296489462|gb|DAA31575.1| cold shock domain containing E1, RNA-binding [Bos taurus]
          Length = 767

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI          ++F H S      L +L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIERGDIV---KEIFFHYSEFKGD-LESLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|89514265|gb|ABD74995.1| putative cold shock transcription regulator protein
          [Sinorhizobium kostiense]
          Length = 29

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFL 33
          +  G++K++N DKG+GFI PE     G D+F+
Sbjct: 1  METGTVKFFNTDKGFGFIKPE---NGGADIFV 29


>gi|83591523|ref|YP_425275.1| cold-shock DNA-binding protein family protein [Rhodospirillum
           rubrum ATCC 11170]
 gi|83574437|gb|ABC20988.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC
           11170]
          Length = 882

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG++K Y+P KG G+I P+G    G D+ + ++ + + G+  L +   V    +  D  G
Sbjct: 819 RGTVKHYDPIKGRGYIIPDGK---GSDILIEKAVLKACGMGRLKKNDRVV--VITKDQGG 873

Query: 64  KYSAENLK 71
           K  A +++
Sbjct: 874 KPVAIDVR 881


>gi|148227486|ref|NP_001091494.1| cold shock domain-containing protein E1 [Bos taurus]
 gi|146186480|gb|AAI40515.1| CSDE1 protein [Bos taurus]
          Length = 767

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI          ++F H S      L +L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIERGDIV---KEIFFHYSEFKGD-LESLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.2 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|119577021|gb|EAW56617.1| cold shock domain containing E1, RNA-binding, isoform CRA_e [Homo
           sapiens]
          Length = 555

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 160 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 213

Query: 76  SS 77
            +
Sbjct: 214 GT 215


>gi|16356661|gb|AAL15445.1| NRAS-related protein [Homo sapiens]
          Length = 708

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|73981075|ref|XP_856559.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 8 [Canis
           familiaris]
 gi|73981077|ref|XP_856596.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 9 [Canis
           familiaris]
          Length = 668

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI          ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 67  FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 120

Query: 76  SS 77
            +
Sbjct: 121 GT 122



 Score = 42.2 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 555 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 605


>gi|3387902|gb|AAC28634.1| unknown [Homo sapiens]
          Length = 467

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|145284584|gb|ABP52039.1| cold shock protein [Psychrobacter sp. BJ3]
          Length = 27

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KG+GFI  +     G DVF+H
Sbjct: 1  GQVKWFNEAKGFGFIAQD---NGGQDVFVH 27


>gi|90408574|ref|ZP_01216730.1| Cold-shock DNA-binding domain protein [Psychromonas sp. CNPT3]
 gi|90310328|gb|EAS38457.1| Cold-shock DNA-binding domain protein [Psychromonas sp. CNPT3]
          Length = 208

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G I  +N DKG+GF+    S   G   F+H  +        +  G ++TY+ VQ +
Sbjct: 1  MRSQGKILNWNDDKGFGFVV---SNAGGVSAFVHIKSFQVNARRPVN-GDVITYELVQGN 56

Query: 61 ANGKYSAENLKLVPKSSN 78
             +Y A+ +K +  + N
Sbjct: 57 DQ-RYQAKQVKFLNDAVN 73


>gi|240170464|ref|ZP_04749123.1| cold-shock DNA-binding protein family protein [Mycobacterium
          kansasii ATCC 12478]
          Length = 99

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G I W++ ++G+GF+ P    +   DVF+  S +       + EGQ V+Y         +
Sbjct: 36 GVINWFDDERGFGFVHP---ADGDRDVFIDSSEIVDWPAGGVHEGQHVSYQTGGTRHWPR 92

Query: 65 YSAENL 70
            A ++
Sbjct: 93 AQAVHI 98


>gi|69246264|ref|ZP_00603877.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
 gi|68195365|gb|EAN09814.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO]
          Length = 52

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 39 ASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
             G   L EGQ VT+D  ++D  G  +A  +K
Sbjct: 20 QGDGFKTLEEGQAVTFDVEESD-RGPQAANVVK 51


>gi|55731729|emb|CAH92569.1| hypothetical protein [Pongo abelii]
          Length = 767

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSDFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|226953538|ref|ZP_03824002.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|294649474|ref|ZP_06726898.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
 gi|226835716|gb|EEH68099.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|292824644|gb|EFF83423.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 97

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 18/78 (23%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-----QLVTYDYV 57
          ++G +K YNPDKG+GFI   G+TE   DVF H S   SA      EG     + V +  V
Sbjct: 6  YQGKVKQYNPDKGFGFI---GTTEG--DVFFHISDFPSA------EGEPKRNEKVKFAVV 54

Query: 58 QNDANGKYSAENLKLVPK 75
          +N   GK+ A  ++ V  
Sbjct: 55 ENQ--GKFKAVQIERVDP 70


>gi|167470786|ref|ZP_02335490.1| cold shock DNA-binding domain protein [Yersinia pestis FV-1]
          Length = 46

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          FL  SA+AS G   L +G  V ++   N A G  +A  + +
Sbjct: 7  FLILSAIASNGFKTLADGLRVEFEIT-NGAKGPSAANVIAI 46


>gi|262369347|ref|ZP_06062675.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          johnsonii SH046]
 gi|262315415|gb|EEY96454.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          johnsonii SH046]
          Length = 97

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 3  HRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          ++G +K YN DKG+GFI +PEG      DVF H S   +         + V ++ V+N  
Sbjct: 6  YQGKVKQYNADKGFGFISSPEG------DVFFHISDFPADS-GEPKRNERVKFNVVENGD 58

Query: 62 N 62
           
Sbjct: 59 R 59


>gi|4689156|gb|AAD27787.1|AF077054_1 unr protein [Homo sapiens]
          Length = 770

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVAPDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 657 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 707



 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + 
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIK 91


>gi|195998678|ref|XP_002109207.1| hypothetical protein TRIADDRAFT_20474 [Trichoplax adhaerens]
 gi|190587331|gb|EDV27373.1| hypothetical protein TRIADDRAFT_20474 [Trichoplax adhaerens]
          Length = 116

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAE 68
           ++ DKG+GFI PE S +    +F+H S +     + L  G  V +          K  A 
Sbjct: 46  FHRDKGHGFIKPEDSNDL---IFVHISDINGE--YVLKAGDAVKFKTCPLPPKCDKLQAV 100

Query: 69  NLKLV 73
           ++ +V
Sbjct: 101 DVTIV 105


>gi|265766785|ref|ZP_06094614.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253162|gb|EEZ24638.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 146

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G I+++N  KGYGF+      + G+  F H S+  +     + EG  VT++  +     
Sbjct: 84  MGRIEYFNAAKGYGFV---KDADCGEKYFFHISSAPA----TIAEGDRVTFEIERGMRG- 135

Query: 64  KYSAENLKLV 73
             +A  + +V
Sbjct: 136 -MNAVRISIV 144


>gi|262280387|ref|ZP_06058171.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          calcoaceticus RUH2202]
 gi|262258165|gb|EEY76899.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          calcoaceticus RUH2202]
          Length = 209

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ +KGYGFI P+ + +    VFLH    A  G   +  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLIILD 56

Query: 60 DANGKYSAENLKLVPKSS 77
          +  G++ A+ +  +  S 
Sbjct: 57 E-RGRFRAQQVTYLKASQ 73


>gi|269214459|ref|ZP_05986599.2| cold-shock DNA-binding domain protein [Neisseria lactamica ATCC
          23970]
 gi|269209733|gb|EEZ76188.1| cold-shock DNA-binding domain protein [Neisseria lactamica ATCC
          23970]
          Length = 204

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDANGKY 65
          +KW + +KGYGFI  +G      ++F H S  +       + E   V ++ V +D  G++
Sbjct: 19 VKW-DDEKGYGFIRIDG---GNKEIFCHISDFSPRNPRPEINE--AVGFEVV-SDGKGRF 71

Query: 66 SAENLKLVPKS 76
          SA+ ++ + + 
Sbjct: 72 SAKQIRYLNRE 82


>gi|239994473|ref|ZP_04714997.1| integral membrane protein [Alteromonas macleodii ATCC 27126]
          Length = 165

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G I+ ++  KGYGF+ P G    G   F H  A        +  G ++ Y+  Q D
Sbjct: 1  MKYQGRIQQWDDAKGYGFVEPNG---GGTRAFTHIKAFKQRSRRPVN-GDIIVYEVEQ-D 55

Query: 61 ANGKYSAENLKLVPK 75
           NG + A N+ L+  
Sbjct: 56 RNGNHRACNISLLKD 70


>gi|86145857|ref|ZP_01064185.1| hypothetical protein MED222_13695 [Vibrio sp. MED222]
 gi|85836312|gb|EAQ54442.1| hypothetical protein MED222_13695 [Vibrio sp. MED222]
          Length = 155

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
          ++   ++W + ++G+GFI  +   E   D+F+H S     G  +   G  V +  
Sbjct: 1  MNGKIVRWVD-ERGFGFINSD---ELKGDIFVHISKF-RKGYRSPKVGDSVEFQL 50


>gi|89256155|ref|YP_513517.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
          holarctica LVS]
 gi|156502190|ref|YP_001428255.1| cold shock DNA-binding domain-containing protein [Francisella
          tularensis subsp. holarctica FTNF002-00]
 gi|167010573|ref|ZP_02275504.1| cold shock protein [Francisella tularensis subsp. holarctica
          FSC200]
 gi|254367479|ref|ZP_04983505.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
          holarctica 257]
 gi|290953272|ref|ZP_06557893.1| cold shock DNA-binding domain-containing protein [Francisella
          tularensis subsp. holarctica URFT1]
 gi|295313478|ref|ZP_06804074.1| cold shock DNA-binding domain-containing protein [Francisella
          tularensis subsp. holarctica URFT1]
 gi|89143986|emb|CAJ79219.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
          holarctica LVS]
 gi|134253295|gb|EBA52389.1| cold shock protein (DNA-binding) [Francisella tularensis subsp.
          holarctica 257]
 gi|156252793|gb|ABU61299.1| cold shock DNA-binding domain protein [Francisella tularensis
          subsp. holarctica FTNF002-00]
          Length = 143

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62
          +G +K+YN DKGYGFI    S ES  D F    ++       +  G   V ++  Q+   
Sbjct: 2  QGIVKFYNKDKGYGFI---YSEESEKDFFF---SINDWKNPTVPNGSDDVEFEVAQSKKG 55

Query: 63 GKYSAENLKLVPKSSN 78
              A N+KL+  + +
Sbjct: 56 --EKAINIKLLKSAED 69


>gi|332184237|gb|AEE26491.1| Cold shock protein [Francisella cf. novicida 3523]
          Length = 143

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62
          +G++K+YN DKGYGFI    S ES  D F   S +       +  G   V ++  Q+   
Sbjct: 2  QGTVKFYNKDKGYGFI---YSEESEKDFF--FS-INDWKNPTVPNGSDDVEFEVAQSKKG 55

Query: 63 GKYSAENLKLVPKSSN 78
              A ++KL+  + +
Sbjct: 56 --EKAISIKLLKSAED 69


>gi|227509389|ref|ZP_03939438.1| possible cold-shock protein [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
 gi|227512213|ref|ZP_03942262.1| possible cold-shock protein [Lactobacillus buchneri ATCC 11577]
 gi|227084607|gb|EEI19919.1| possible cold-shock protein [Lactobacillus buchneri ATCC 11577]
 gi|227191101|gb|EEI71168.1| possible cold-shock protein [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
          Length = 93

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K YN   G+GFIT +     GD++F  ++A        +  G  V+Y  V+   
Sbjct: 23 MLYGKVKTYNAKNGFGFITQDQ----GDNLFFFKNAFHGEDYSRIVPGIRVSYVVVEGQ- 77

Query: 62 NGKYSAENLKLVPKSSN 78
           G  +A+  ++V ++  
Sbjct: 78 KGPQAAKA-QIVEEAGE 93


>gi|291394305|ref|XP_002713505.1| PREDICTED: DNA-binding protein B-like [Oryctolagus cuniculus]
          Length = 301

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 18  FITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAEN 69
           FI      ++ +DVF+H++A+        L ++ +G+ V +D V+ +  G  +A  
Sbjct: 51  FI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE-KGAEAANV 102


>gi|71652991|ref|XP_815141.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70880174|gb|EAN93290.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 458

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 30  DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78
           D+F+H+S +   G   L+ G  V +          + A +++   +S  
Sbjct: 278 DIFVHQSYIQMQGFRALSVGDKVVFRIGVLPGKKAHQAVSVQRTQESGK 326


>gi|322823854|gb|EFZ29482.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 458

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 30  DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78
           D+F+H+S +   G   L+ G  V +          + A +++   +S  
Sbjct: 278 DIFVHQSYIQMQGFRALSVGDKVVFRIGVLPGKKAHQAVSVQRTQESGK 326


>gi|71657728|ref|XP_817375.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70882562|gb|EAN95524.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 458

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 30  DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78
           D+F+H+S +   G   L+ G  V +          + A +++   +S  
Sbjct: 278 DIFVHQSYIQMQGFRALSVGDKVVFRIGVLPGKKAHQAVSVQRTQESGK 326


>gi|331004619|ref|ZP_08328084.1| hypothetical protein HMPREF0491_02946 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330410488|gb|EGG89918.1| hypothetical protein HMPREF0491_02946 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 737

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
          ++G+GFI      E   D F H S V       L EG+++ ++    D  GK  A N++
Sbjct: 11 ERGFGFI----LGEDKKDYFFHISQVKYCSWGELAEGEVLEFE--TKDVKGKLQAFNIR 63


>gi|328707104|ref|XP_003243299.1| PREDICTED: cold shock domain-containing protein E1-like isoform 2
           [Acyrthosiphon pisum]
          Length = 944

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF+T E   E G  +F H S V + G+  L +G LV +  V N  +GK S  N
Sbjct: 819 DAIKGLFGFLTHE--VEGGKKLFFHTSEV-TDGIK-LYQGDLVEFVLVVNQRSGKSSGCN 874

Query: 70  LKLVPKSSN 78
           +  +  + N
Sbjct: 875 VTKISSAEN 883



 Score = 39.5 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 151 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAP 206

Query: 76  S 76
            
Sbjct: 207 E 207



 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDANGKY--SAENLK 71
           G+GFI           VF   + +      +L  G  V Y    +N  NG    SAEN++
Sbjct: 663 GFGFIETIALDSE---VFFRYANLNEPS-ASLELGMEVEYTLSTRNTGNGGSCASAENVR 718

Query: 72  LVPKSS 77
           ++P  S
Sbjct: 719 ILPPGS 724


>gi|225709220|gb|ACO10456.1| Cold shock domain-containing protein C2 [Caligus rogercresseyi]
 gi|225711724|gb|ACO11708.1| Cold shock domain-containing protein C2 [Caligus rogercresseyi]
          Length = 189

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
            G++K++   +G+GF+TP        + F+H S +   
Sbjct: 87  EGTVKYFCRSRGFGFLTPNKPVNGNKEFFMHISDIEGE 124


>gi|149758597|ref|XP_001494108.1| PREDICTED: similar to Y-box protein 3 short [Equus caballus]
          Length = 138

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59
          RGSIK +N    Y FI+   + E   DVF+H++A+          ++  G++V  D VQ 
Sbjct: 17 RGSIKRFNVKNRYSFISRHDTQE---DVFVHQTAITRNNPHKYQRSVGVGEMVELDVVQG 73

Query: 60 DAN 62
             
Sbjct: 74 KPG 76


>gi|323457293|gb|EGB13159.1| hypothetical protein AURANDRAFT_60508 [Aureococcus anophagefferens]
          Length = 670

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           +IK + P+KG+GF T  G      DVF HRS+V+ + +  L  G  VT    ++    K 
Sbjct: 252 TIKSWRPEKGFGFCTVPGEA---KDVFFHRSSVSGS-VDALRAGAEVTVTVGRDGRGRKQ 307


>gi|297519352|ref|ZP_06937738.1| Cold shock-like protein cspC [Escherichia coli OP50]
          Length = 31

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFL 33
          +G +KW+N  KG+GFITP    +   DVF+
Sbjct: 5  KGQVKWFNESKGFGFITP---ADGSKDVFV 31


>gi|261379495|ref|ZP_05984068.1| cold shock protein [Neisseria subflava NJ9703]
 gi|284797958|gb|EFC53305.1| cold shock protein [Neisseria subflava NJ9703]
          Length = 198

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +KW++  KGYG+I     +E G + +     +  A L     G  VT++  +    G
Sbjct: 2  NGKVKWFSESKGYGYIV----SEEGKEYYFTVKHIQGAELP--HNGDAVTFE-ARTSKRG 54

Query: 64 KYSAENLKLVPKSSN 78
             A  + +  K+S 
Sbjct: 55 PV-AGTVVITEKASE 68


>gi|328707106|ref|XP_001948689.2| PREDICTED: cold shock domain-containing protein E1-like isoform 1
           [Acyrthosiphon pisum]
          Length = 900

 Score = 48.4 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF+T E   E G  +F H S V + G+  L +G LV +  V N  +GK S  N
Sbjct: 775 DAIKGLFGFLTHE--VEGGKKLFFHTSEV-TDGIK-LYQGDLVEFVLVVNQRSGKSSGCN 830

Query: 70  LKLVPKSSN 78
           +  +  + N
Sbjct: 831 VTKISSAEN 839



 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 107 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAP 162

Query: 76  S 76
            
Sbjct: 163 E 163



 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDANGKY--SAENLK 71
           G+GFI           VF   + +      +L  G  V Y    +N  NG    SAEN++
Sbjct: 619 GFGFIETIALDSE---VFFRYANLNEPS-ASLELGMEVEYTLSTRNTGNGGSCASAENVR 674

Query: 72  LVPKSS 77
           ++P  S
Sbjct: 675 ILPPGS 680


>gi|55731342|emb|CAH92385.1| hypothetical protein [Pongo abelii]
          Length = 311

 Score = 48.4 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 67  FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 120

Query: 76  SS 77
            +
Sbjct: 121 GT 122


>gi|156383918|ref|XP_001633079.1| predicted protein [Nematostella vectensis]
 gi|156220144|gb|EDO41016.1| predicted protein [Nematostella vectensis]
          Length = 700

 Score = 48.4 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 14  KG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
           KG +GFI  E   E G ++F H S VA      L  G  V +  VQ    GK SA N++ 
Sbjct: 644 KGQFGFIGHEN--EEGKNLFFHISEVAEN--VELQAGDEVEFFVVQ-KRGGKLSAVNVRK 698

Query: 73  V 73
           +
Sbjct: 699 I 699



 Score = 36.9 bits (85), Expect = 0.98,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          YGFI      E    +F H S      L +L  G  V +    +  + K  A N+ L+
Sbjct: 13 YGFIQ---CCERELRIFFHYSQYKGD-LDDLRIGDEVEFGVSCDQRSKKPVAVNIVLL 66


>gi|326530806|dbj|BAK01201.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 149

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           +RG IK +  +KG+GFI P+G  E    VFLH S +         EG +V++
Sbjct: 65  YRGVIKNFCRNKGHGFIQPDGEAEP---VFLHISDIEGEWCP--KEGDVVSF 111


>gi|328707108|ref|XP_003243300.1| PREDICTED: cold shock domain-containing protein E1-like isoform 3
           [Acyrthosiphon pisum]
          Length = 893

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF+T E   E G  +F H S V + G+  L +G LV +  V N  +GK S  N
Sbjct: 768 DAIKGLFGFLTHE--VEGGKKLFFHTSEV-TDGIK-LYQGDLVEFVLVVNQRSGKSSGCN 823

Query: 70  LKLVPKSSN 78
           +  +  + N
Sbjct: 824 VTKISSAEN 832



 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 100 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAP 155

Query: 76  S 76
            
Sbjct: 156 E 156



 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDANGKY--SAENLK 71
           G+GFI           VF   + +      +L  G  V Y    +N  NG    SAEN++
Sbjct: 612 GFGFIETIALDSE---VFFRYANLNEPS-ASLELGMEVEYTLSTRNTGNGGSCASAENVR 667

Query: 72  LVPKSS 77
           ++P  S
Sbjct: 668 ILPPGS 673


>gi|225708686|gb|ACO10189.1| Cold shock domain-containing protein C2 [Caligus rogercresseyi]
          Length = 189

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
            G++K++   +G+GF+TP        + F+H S +   
Sbjct: 87  EGTVKYFCRSRGFGFLTPNKPVNGNKEFFMHISDIEGE 124


>gi|50956442|gb|AAT90749.1| CspA [Bifidobacterium animalis subsp. lactis]
          Length = 44

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          VF+H S++ + G   L +G LV YD    D  G+ +   +K+
Sbjct: 1  VFVHYSSIEAEGFKALRQGDLVEYDSKPTD-KGELATRVVKI 41


>gi|145284596|gb|ABP52045.1| cold shock protein [Moritella sp. 2-5-10-1]
          Length = 26

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 4/30 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34
          G +KW+N  KG+GFI  +    SG+DVF+H
Sbjct: 1  GMVKWFNDSKGFGFIQRD----SGEDVFVH 26


>gi|301782271|ref|XP_002926552.1| PREDICTED: protein lin-28 homolog A-like [Ailuropoda melanoleuca]
          Length = 232

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 18/58 (31%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           G  KW+N   G+GF+T                   + G  +L EG+ V + + ++   
Sbjct: 87  GVCKWFNVRVGFGFLT------------------RTEGFRSLKEGEAVEFTFKKSAKG 126


>gi|218709272|ref|YP_002416893.1| hypothetical protein VS_1279 [Vibrio splendidus LGP32]
 gi|218322291|emb|CAV18421.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 155

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          ++   ++W + ++G+GFI  +   E   D+F+H S     G  +   G  V +
Sbjct: 1  MNGKIVRWVD-ERGFGFINSD---ELKGDIFVHISKF-RKGYRSPKVGDSVEF 48


>gi|220934585|ref|YP_002513484.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219995895|gb|ACL72497.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 204

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G I  +  D+G+GFI P      G +VF+H  +  +     +   ++VTYD V +D
Sbjct: 1  MRAKGRIYDWKDDRGFGFIRP---NVGGKEVFVHIRSFNNRTRRPVR-NEIVTYDLVIDD 56

Query: 61 ANGKYSAENL 70
            G+  AE +
Sbjct: 57 Q-GRPRAEKV 65


>gi|149577832|ref|XP_001517851.1| PREDICTED: similar to cold shock domain containing E1, RNA-binding
           [Ornithorhynchus anatinus]
          Length = 687

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 37.2 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|213021626|ref|ZP_03336073.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
 gi|213608020|ref|ZP_03368846.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-2068]
          Length = 38

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          H SA+ S     L E Q V +   Q    G  +   + L
Sbjct: 1  HFSAIQSNEFRTLNENQEVEFSAEQG-PKGPSAVNVVAL 38


>gi|50086376|ref|YP_047886.1| putative cold shock protein [Acinetobacter sp. ADP1]
 gi|49532352|emb|CAG70064.1| putative cold shock protein [Acinetobacter sp. ADP1]
          Length = 208

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ DKGYGFI P  S +    VFLH    A  G   +  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFD-DKGYGFIQPNDSQKGR--VFLHIRDFARKGPRPIV-GCALEYLVILD 56

Query: 60 DANGKYSAENL 70
          +  G++ A  +
Sbjct: 57 EQ-GRHRAIQV 66


>gi|74008938|ref|XP_537423.2| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
           familiaris]
          Length = 993

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 24  STESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAENL 70
             ++ +DVF+H +A+        L ++ +G+ V +D V+    G+ +A  +
Sbjct: 689 QNDTKEDVFVHLTAIKKNNPWKYLHSVGDGETVEFDVVEGQ-KGEEAANVI 738


>gi|294651837|ref|ZP_06729130.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292822268|gb|EFF81178.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 205

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ DKGYGFI P  + +    VFLH    A  G   +  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFD-DKGYGFIQPNDAFKDR--VFLHIKDFARPGPRPIV-GCALEYLVILD 56

Query: 60 DANGKYSAENLKLVPKSS 77
          +  G+Y A+ +  +  S 
Sbjct: 57 E-RGRYRAQQVTYLKASQ 73


>gi|226953687|ref|ZP_03824151.1| cold shock protein [Acinetobacter sp. ATCC 27244]
 gi|226835559|gb|EEH67942.1| cold shock protein [Acinetobacter sp. ATCC 27244]
          Length = 205

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ DKGYGFI P  + +    VFLH    A  G   +  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFD-DKGYGFIQPNDAFKDH--VFLHIKDFARPGPRPIV-GCALEYLVILD 56

Query: 60 DANGKYSAENLKLVPKSS 77
          +  G+Y A+ +  +  S 
Sbjct: 57 E-RGRYRAQQVTYLKASQ 73


>gi|299768495|ref|YP_003730521.1| hypothetical protein AOLE_01225 [Acinetobacter sp. DR1]
 gi|298698583|gb|ADI89148.1| hypothetical protein AOLE_01225 [Acinetobacter sp. DR1]
          Length = 209

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ +KGYGFI P+ + +    VFLH    A  G   +  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLIILD 56

Query: 60 DANGKYSAENLKLVPKSS 77
          +  G++ A+ +  +  S 
Sbjct: 57 EQ-GRFRAQQVTYLKASQ 73


>gi|71895719|ref|NP_001025700.1| cold shock domain containing E1, RNA-binding [Xenopus (Silurana)
           tropicalis]
 gi|63100223|gb|AAH95920.1| cold shock domain containing E1, RNA-binding [Xenopus (Silurana)
           tropicalis]
          Length = 799

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK S  N+ L+ K
Sbjct: 686 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSGCNVTLISK 741



 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 36 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSADRRTGKPIAVKLVKIKT 91

Query: 76 S 76
           
Sbjct: 92 E 92


>gi|192360925|ref|YP_001982618.1| Cold-shock' DNA-binding domain-containing protein [Cellvibrio
          japonicus Ueda107]
 gi|190687090|gb|ACE84768.1| 'Cold-shock' DNA-binding domain protein [Cellvibrio japonicus
          Ueda107]
          Length = 106

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 6  SIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          ++K W+  DKGYGF+      E   D+ +H S + +     L  G+ V +D   N     
Sbjct: 4  TVKCWF-ADKGYGFLN--NGGEFSKDIMVHVSELKNCEY--LKPGRTVEFDCDFNQKG-- 56

Query: 65 YSAENLKLVPKSSN 78
            A+N+ LV +  +
Sbjct: 57 LIAKNVHLVYEEQS 70


>gi|326669944|ref|XP_002663141.2| PREDICTED: cold shock domain-containing protein E1 [Danio rerio]
          Length = 836

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +   +   NGK  A +++L+P+
Sbjct: 214 FGFIER---GDVVKEIFFHYSEFKGD-LEALQAGDDVEFTIKE--RNGKEVATDVRLLPQ 267

Query: 76  SS 77
            +
Sbjct: 268 GT 269



 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFIT E        +F H   V  +    L  G  V +  + N   GK SA N++ V +
Sbjct: 723 FGFITYEVG--ESKKLFFHVKEVQDS--LELQAGDEVEFSVILNQRTGKCSACNVRRVSE 778



 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKIGDDVEFEVSSDRRTGKPIAVKLVKIKA 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|126313513|ref|XP_001362186.1| PREDICTED: similar to cold shock domain containing E1, RNA-binding,
           isoform 1 [Monodelphis domestica]
          Length = 798

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735



 Score = 36.9 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|222874693|gb|EEF11824.1| predicted protein [Populus trichocarpa]
          Length = 127

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 40 SAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
           +G   L EGQ V ++ VQ    GK  A N++
Sbjct: 1  MSGFKTLKEGQRVVFEIVQG-PKGKQ-ATNIQ 30


>gi|300176002|emb|CBK22219.2| unnamed protein product [Blastocystis hominis]
          Length = 126

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGL-FN--LTEGQLVTYDYVQN 59
          +G +KWY+   GYGFI+     E+  D F+H++ + S         L   + V +     
Sbjct: 22 KGVVKWYDGYMGYGFIS--TLDETPVDYFVHKTQIYSLDKFPRTPILFNKEEVEFAVCDT 79

Query: 60 DANGKYSAENLKL 72
          +     +AE + L
Sbjct: 80 EKG--KAAEEVSL 90


>gi|281341041|gb|EFB16625.1| hypothetical protein PANDA_016210 [Ailuropoda melanoleuca]
          Length = 183

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 18/58 (31%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G  KW+N   G+GF+T                   + G  +L EG+ V + + ++   
Sbjct: 38 GVCKWFNVRVGFGFLT------------------RTEGFRSLKEGEAVEFTFKKSAKG 77


>gi|148232966|ref|NP_001090026.1| cold shock domain containing E1, RNA-binding [Xenopus laevis]
 gi|63101211|gb|AAH94485.1| MGC114719 protein [Xenopus laevis]
          Length = 781

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      +  L  G  V +     D NGK  A +++++P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-IEALQPGDDVEFTI--KDRNGKEVATDVRILPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK S  N+ L+ K
Sbjct: 668 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSGCNVTLISK 723



 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 36 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSADRRTGKPIAVKLVKIKT 91

Query: 76 S 76
           
Sbjct: 92 E 92


>gi|262373360|ref|ZP_06066639.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
 gi|262313385|gb|EEY94470.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
          Length = 235

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQN 59
          M   G IK Y+ ++G+GFI  +G      DVF H      ++G   +  G+ + +  V++
Sbjct: 1  MFVEGKIKKYDTERGFGFIKVDGHQ---TDVFFHIKDFPKASGEPKI--GEKLKFLIVED 55

Query: 60 DANGKYSAENLKLVPKSS 77
          +     +A  ++L  K +
Sbjct: 56 NNGKFKAANIVRLDQKQA 73


>gi|156537407|ref|XP_001606818.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 893

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF+  E   + G  +F H S V       L  G  V +  V N  +GK SA N
Sbjct: 778 DAVKGPFGFLAYE--VDEGKKLFFHMSEVCDD--AKLKPGDQVEFVLVTNQRSGKSSACN 833

Query: 70  LKLVPKS 76
           +  + ++
Sbjct: 834 VVRLSEA 840



 Score = 40.3 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 135 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKISP 190

Query: 76  S 76
            
Sbjct: 191 E 191



 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S   S     L  G  V +  +Q   NGK  A N+  +P 
Sbjct: 286 FGFIER---ADVVKEIFFHFSEAKSMK-DELRLGDDVEF-IIQT-RNGKEVACNITKLPP 339

Query: 76  SS 77
            S
Sbjct: 340 GS 341


>gi|126313515|ref|XP_001362268.1| PREDICTED: similar to cold shock domain containing E1, RNA-binding,
           isoform 2 [Monodelphis domestica]
          Length = 767

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|126337665|ref|XP_001363238.1| PREDICTED: similar to Calcium regulated heat stable protein 1,
           24kDa [Monodelphis domestica]
          Length = 146

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60
           +++G  K +   KG+GFITP    + G D+FL  S V    +    EG  VTY       
Sbjct: 61  IYKGVCKCFYRSKGHGFITP---ADGGPDIFLLISDVEGEYMP--MEGDEVTYKMCSIPP 115

Query: 61  ANGKYSAENLKL 72
            N K+ A  + +
Sbjct: 116 KNEKHQAVEVVI 127


>gi|327271517|ref|XP_003220534.1| PREDICTED: cold shock domain-containing protein E1-like isoform 1
           [Anolis carolinensis]
          Length = 796

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 683 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 733



 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAIKLVKIKT 92

Query: 76 SS 77
           +
Sbjct: 93 ET 94


>gi|166712861|ref|ZP_02244068.1| cold shock domain protein [Xanthomonas oryzae pv. oryzicola
          BLS256]
          Length = 191

 Score = 47.3 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G++  +N D G+GF  P    + GDD+F+H SA    G      G +++++  + D
Sbjct: 1  MRAHGTLTRWNTDPGFGFFPP---AQPGDDLFVHLSAFPR-GFEAPRIGGVLSFE-TEPD 55

Query: 61 ANGKYSAENL 70
           +G+  A  +
Sbjct: 56 TDGRTRAVRI 65


>gi|326933723|ref|XP_003212950.1| PREDICTED: cold shock domain-containing protein E1-like isoform 1
           [Meleagris gallopavo]
          Length = 796

 Score = 47.3 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 683 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 733



 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|209694996|ref|YP_002262925.1| cold-shock protein [Aliivibrio salmonicida LFI1238]
 gi|208008948|emb|CAQ79171.1| cold-shock protein [Aliivibrio salmonicida LFI1238]
          Length = 176

 Score = 47.3 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +    ++W +  KG+GFI         ++VF H S     G      G  V +       
Sbjct: 1  MEGQVVRWIDN-KGFGFIRGNDPDND-NEVFAHISQFKK-GYRRPRVGDEVVFLI--GYE 55

Query: 62 NGKYSAENLKLV 73
          +GK  A  + L+
Sbjct: 56 DGKKVANTISLI 67


>gi|227524055|ref|ZP_03954104.1| hypothetical protein HMPREF0519_1764 [Lactobacillus hilgardii
          ATCC 8290]
 gi|227088794|gb|EEI24106.1| hypothetical protein HMPREF0519_1764 [Lactobacillus hilgardii
          ATCC 8290]
          Length = 78

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G +K YN   G+GFIT +     GD++F  ++A        +  G  V+Y  V+   
Sbjct: 8  MLYGKVKTYNAKNGFGFITQDQ----GDNLFFFKNAFHGEDYSRIVPGIRVSYVVVEGQ- 62

Query: 62 NGKYSAENLKLVPKSSN 78
           G  +A+  ++V ++  
Sbjct: 63 KGPQAAKA-QIVEEAGE 78


>gi|327271519|ref|XP_003220535.1| PREDICTED: cold shock domain-containing protein E1-like isoform 2
           [Anolis carolinensis]
          Length = 812

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 213 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 266

Query: 76  SS 77
            +
Sbjct: 267 GT 268



 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 699 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 749



 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 84  YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAIKLVKIKT 139

Query: 76  SS 77
            +
Sbjct: 140 ET 141


>gi|300864970|ref|ZP_07109802.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337026|emb|CBN54952.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 187

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          IKW N D+G+GFI P   +  G +VFLH SAV + G      G  + Y   +   +GK+ 
Sbjct: 11 IKW-NDDRGFGFIKP---SAGGREVFLHISAVKTKGRR-PKIGDTIFYKLTRGT-DGKFC 64

Query: 67 AENLKL 72
          A +  +
Sbjct: 65 ASDASI 70


>gi|332026461|gb|EGI66589.1| Cold shock domain-containing protein E1 [Acromyrmex echinatior]
          Length = 881

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF+  E   + G  +F H S V       L  G  V +  V N   GK SA N
Sbjct: 766 DAMKGPFGFLAYE--VDEGRKLFFHVSEVRD--HVTLQPGDQVEFVLVTNQRTGKSSACN 821

Query: 70  LKLVPKSSN 78
           +  +  +  
Sbjct: 822 VTRLSDTVQ 830



 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S   S     L  G  V +  +Q   NGK  A N+  +P 
Sbjct: 281 FGFIER---ADVVKEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 334

Query: 76  SS 77
            S
Sbjct: 335 GS 336



 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 132 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDAVEFEMTYDRRTGKPIASTVSKIGP 187

Query: 76  SS 77
            S
Sbjct: 188 VS 189


>gi|319786851|ref|YP_004146326.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317465363|gb|ADV27095.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 198

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G I  +N ++G+GFI   G ++    VF+H           +  G  VTY+  Q D
Sbjct: 1  MRLAGKIIEWNDERGFGFIAQNGGSQR---VFVHVRDFEGRARRPVV-GDPVTYEPGQ-D 55

Query: 61 ANGKYSAENLK 71
          A G+  A  ++
Sbjct: 56 ARGRPMATRVR 66


>gi|307823226|ref|ZP_07653456.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
 gi|307736001|gb|EFO06848.1| cold-shock DNA-binding domain protein [Methylobacter
          tundripaludum SV96]
          Length = 190

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +  +N DKG+GFI PE        VF+H SA+ +     +  G ++ Y     + +G
Sbjct: 6  KGKLNRWNDDKGFGFIIPENGNNE---VFIHISALKNMSRRPVV-GDVILYQLHVGN-DG 60

Query: 64 KYSAENLKL 72
          K  A N K+
Sbjct: 61 KNKAINAKI 69


>gi|313661504|ref|NP_001186365.1| cold shock domain-containing protein E1 [Danio rerio]
          Length = 798

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +   +   NGK  A +++L+P+
Sbjct: 195 FGFIER---GDVVKEIFFHYSEFKGD-LEALQAGDDVEFTIKE--RNGKEVATDVRLLPQ 248

Query: 76  SS 77
            +
Sbjct: 249 GT 250



 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFIT E        +F H   V  +    L  G  V +  + N   GK SA N++ V +
Sbjct: 685 FGFITYEVG--ESKKLFFHVKEVQDS--LELQAGDEVEFSVILNQRTGKCSACNVRRVSE 740



 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKIGDDVEFEVSSDRRTGKPIAVKLVKIKA 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|28493015|ref|NP_787176.1| cold shock protein B [Tropheryma whipplei str. Twist]
 gi|28572227|ref|NP_789007.1| cold shock protein B [Tropheryma whipplei TW08/27]
 gi|28410358|emb|CAD66744.1| cold shock protein B [Tropheryma whipplei TW08/27]
 gi|28476055|gb|AAO44145.1| cold shock protein B [Tropheryma whipplei str. Twist]
          Length = 125

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++++YN ++G+GF+     ++ G+ VFL   A+   G+ +L+ G  V Y      A
Sbjct: 1  MPLGTVRFYNKERGFGFVV----SDDGESVFLPAKAL-PDGVSDLSPGTRVDY----GAA 51

Query: 62 NGKYSAENLKL 72
           GK  ++ L L
Sbjct: 52 LGKKGSQVLSL 62


>gi|222035900|emb|CAP78645.1| cold shock protein [Escherichia coli LF82]
 gi|312948773|gb|ADR29600.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli O83:H1 str. NRG 857C]
          Length = 148

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 12/73 (16%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL--TEGQLVTYDYVQNDA 61
           G IKW++ +KGYGFIT   +     D + H S +      +L   +GQ   ++  ++ +
Sbjct: 2  EGVIKWFSEEKGYGFITAANNI----DYYFHVSDIKG----SLLPEKGQNAHFN-AESTS 52

Query: 62 NGKYSAENLKLVP 74
           G + A+N+ L  
Sbjct: 53 KG-HRAKNITLTK 64


>gi|332827423|gb|EGK00175.1| hypothetical protein HMPREF9455_03507 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 150

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 7/59 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G ++++NPDKGYGFI   GST+     F H S+  +    ++T+G +VT++  +    
Sbjct: 85  NGRVEYFNPDKGYGFIKHTGSTDK---YFFHISSAPA----SITDGNMVTFELERGQKG 136


>gi|308802462|ref|XP_003078544.1| unnamed protein product [Ostreococcus tauri]
 gi|116056997|emb|CAL51424.1| unnamed protein product [Ostreococcus tauri]
          Length = 480

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           GYGFI          D+F H S +A     +   GQ V +   +    G+  A +++  P
Sbjct: 160 GYGFI---KCCSRSKDLFFHFSELAEDA-DSAKPGQEVRFVATEEPRRGQLVATSVRYAP 215

Query: 75  KSS 77
           K S
Sbjct: 216 KGS 218


>gi|326933725|ref|XP_003212951.1| PREDICTED: cold shock domain-containing protein E1-like isoform 2
           [Meleagris gallopavo]
          Length = 765

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 41.9 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 652 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 702



 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|291398204|ref|XP_002715791.1| PREDICTED: upstream of NRAS isoform 3 [Oryctolagus cuniculus]
          Length = 844

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI          ++F H S      +  L  G  V +     D NGK  A +++L+P+
Sbjct: 243 FGFIERGDIV---KEIFFHYSEFKGD-IEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 296

Query: 76  SS 77
            +
Sbjct: 297 GT 298



 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 731 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 781



 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  +KLV  
Sbjct: 83  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIA--VKLVKI 136

Query: 76  SSN 78
            S 
Sbjct: 137 KSE 139


>gi|291398202|ref|XP_002715790.1| PREDICTED: upstream of NRAS isoform 2 [Oryctolagus cuniculus]
          Length = 798

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI          ++F H S      +  L  G  V +     D NGK  A +++L+P+
Sbjct: 197 FGFIERGDIV---KEIFFHYSEFKGD-IEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250

Query: 76  SS 77
            +
Sbjct: 251 GT 252



 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735



 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  +KLV  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIA--VKLVKI 90

Query: 76 SSN 78
           S 
Sbjct: 91 KSE 93


>gi|218512161|ref|ZP_03509001.1| cold shock protein [Rhizobium etli 8C-3]
          Length = 37

 Score = 47.3 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 26/35 (74%)

Query: 37 AVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
          AV  AG+ +L +GQ ++YD V+++ +GK SA+ L+
Sbjct: 1  AVERAGMRDLKDGQKLSYDLVRDNKSGKMSADRLQ 35


>gi|258623684|ref|ZP_05718669.1| cold shock domain-containing protein [Vibrio mimicus VM573]
 gi|258584036|gb|EEW08800.1| cold shock domain-containing protein [Vibrio mimicus VM573]
          Length = 183

 Score = 47.3 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAENL 70
            ++G+GFI  +       DVF+H S     G      G  V +    N       SA  +
Sbjct: 38  DERGFGFIKSDDLD---GDVFVHISKF-PQGYRRPQVGDHVEFHLANNQPKLSAASARLI 93

Query: 71  KLVPKSSN 78
            + P+ +N
Sbjct: 94  GVEPQKTN 101


>gi|15790740|ref|NP_280564.1| cold shock protein [Halobacterium sp. NRC-1]
 gi|169236482|ref|YP_001689682.1| cold shock protein [Halobacterium salinarum R1]
 gi|10581282|gb|AAG20044.1| cold shock protein [Halobacterium sp. NRC-1]
 gi|167727548|emb|CAP14336.1| putative cold shock protein [Halobacterium salinarum R1]
          Length = 69

 Score = 47.3 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +  G + ++N   GYGFI T     +  +DVF H   V   G  +L EGQ V +D  ++ 
Sbjct: 1  MASGKVDFFNDTGGYGFISTDADDVDDDEDVFFHMEDV---GGPDLEEGQEVEFDI-ESS 56

Query: 61 ANGKYSAENLK 71
            G  +   ++
Sbjct: 57 PKGPRATNLVR 67


>gi|330466661|ref|YP_004404404.1| putative DNA binding protein [Verrucosispora maris AB-18-032]
 gi|328809632|gb|AEB43804.1| putative DNA binding protein [Verrucosispora maris AB-18-032]
          Length = 135

 Score = 47.3 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G I  ++  +GYGFI P   +  G+DVF+H +         +  G  V ++ V +D   
Sbjct: 1  MGKIIRFDEVRGYGFIAP---SAGGEDVFVHANDF-GEHRHLVRVGLPVEFEAVDSDRG- 55

Query: 64 KYSAENLKLVPKS 76
             A ++++V   
Sbjct: 56 -LKAASVRIVESE 67


>gi|225077021|ref|ZP_03720220.1| hypothetical protein NEIFLAOT_02073 [Neisseria flavescens
          NRL30031/H210]
 gi|224951578|gb|EEG32787.1| hypothetical protein NEIFLAOT_02073 [Neisseria flavescens
          NRL30031/H210]
          Length = 191

 Score = 46.9 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDANGKYS 66
          KW + +KGYGFI  +G      ++F H S  +       + E   V ++ V +D  G++S
Sbjct: 7  KW-DDEKGYGFIRIDG---GNKEIFCHISNFSPRNPRPEINE--AVGFEVV-SDGKGRFS 59

Query: 67 AENLKLVPKS 76
          A+ ++ + + 
Sbjct: 60 AKQIRYLNRE 69


>gi|304378|gb|AAA18017.1| CCAAT-binding protein [Gallus gallus]
          Length = 348

 Score = 46.9 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 11  NPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYS 66
           N   GYG        ++ +DVF+H++A+        L ++ +G+ V +D V+ +  G  +
Sbjct: 61  NVRNGYG---LMNRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE-KGAEA 116

Query: 67  AEN 69
           A  
Sbjct: 117 ANV 119


>gi|153873831|ref|ZP_02002279.1| cold-shock DNA-binding domain family protein [Beggiatoa sp. PS]
 gi|152069703|gb|EDN67719.1| cold-shock DNA-binding domain family protein [Beggiatoa sp. PS]
          Length = 225

 Score = 46.9 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G I  +  DKG+GFI PE   + G+ +F H S++ +    +   G  V YD  + DA G
Sbjct: 2  KGKILQWKDDKGFGFILPE---KGGEKLFFHISSIKNQS-RHPQVGDAVLYDS-ERDAQG 56

Query: 64 KYSAENLKL 72
          +  A+++ L
Sbjct: 57 RLRAKSVVL 65


>gi|291398200|ref|XP_002715789.1| PREDICTED: upstream of NRAS isoform 1 [Oryctolagus cuniculus]
          Length = 767

 Score = 46.9 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI          ++F H S      +  L  G  V +     D NGK  A +++L+P+
Sbjct: 166 FGFIERGDIV---KEIFFHYSEFKGD-IEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219

Query: 76  SS 77
            +
Sbjct: 220 GT 221



 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704



 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  +KLV  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIA--VKLVKI 90

Query: 76 SSN 78
           S 
Sbjct: 91 KSE 93


>gi|330884367|gb|EGH18516.1| hypothetical protein Pgy4_36727 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 23

 Score = 46.9 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 16/20 (80%)

Query: 2  VHRGSIKWYNPDKGYGFITP 21
             G++KW+N +KG+GFITP
Sbjct: 4  RQTGTVKWFNDEKGFGFITP 23


>gi|330876787|gb|EGH10936.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 24

 Score = 46.9 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 17/21 (80%)

Query: 2  VHRGSIKWYNPDKGYGFITPE 22
             G++KW+N +KG+GFITP+
Sbjct: 4  RQTGTVKWFNDEKGFGFITPQ 24


>gi|291398206|ref|XP_002715792.1| PREDICTED: upstream of NRAS isoform 4 [Oryctolagus cuniculus]
          Length = 813

 Score = 46.9 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI          ++F H S      +  L  G  V +     D NGK  A +++L+P+
Sbjct: 212 FGFIERGDIV---KEIFFHYSEFKGD-IEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 265

Query: 76  SS 77
            +
Sbjct: 266 GT 267



 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 750



 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  +KLV  
Sbjct: 83  YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIA--VKLVKI 136

Query: 76  SSN 78
            S 
Sbjct: 137 KSE 139


>gi|96771841|emb|CAI78423.1| putative cold-shock protein [Streptomyces ambofaciens ATCC 23877]
 gi|114050278|emb|CAK51313.1| putative cold-shock protein [Streptomyces ambofaciens]
 gi|117164385|emb|CAJ87929.1| putative cold-shock protein [Streptomyces ambofaciens ATCC 23877]
          Length = 72

 Score = 46.9 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 8/68 (11%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFL-HRS-AVASAGLFNLTEGQLVTYDYVQN 59
          +  G++   N ++G+GF + +G    G DVF+ + S +++ +G   L++G  V +D   +
Sbjct: 7  MASGTM---NAERGFGFTSQDG---GGPDVFVRYFSFSISGSGFRELSKGGQVFFDAAAD 60

Query: 60 DANGKYSA 67
           A  +  A
Sbjct: 61 PAVARLPA 68


>gi|289755774|ref|ZP_06515152.1| LOW QUALITY PROTEIN: cold-shock domain-containing protein
          [Mycobacterium tuberculosis EAS054]
 gi|289696361|gb|EFD63790.1| LOW QUALITY PROTEIN: cold-shock domain-containing protein
          [Mycobacterium tuberculosis EAS054]
          Length = 68

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 17/20 (85%)

Query: 2  VHRGSIKWYNPDKGYGFITP 21
          + +G++KW+N +KG+G ++P
Sbjct: 1  MPQGTVKWFNAEKGFGLLSP 20


>gi|178847413|pdb|2YTX|A Chain A, Solution Structure Of The Second Cold-Shock Domain Of
          The Human Kiaa0885 Protein (Unr Protein)
          Length = 97

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          +GFI      +   ++F H S      L  L  G  V +     D NGK  A +++L+P+
Sbjct: 30 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 83

Query: 76 SS 77
           +
Sbjct: 84 GT 85


>gi|225076846|ref|ZP_03720045.1| hypothetical protein NEIFLAOT_01897 [Neisseria flavescens
          NRL30031/H210]
 gi|224951832|gb|EEG33041.1| hypothetical protein NEIFLAOT_01897 [Neisseria flavescens
          NRL30031/H210]
          Length = 108

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 13/74 (17%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL----TEGQLVTYDY 56
          M + G+I  +N  +G+G  T E   ++G ++F     +A A    L     EGQ ++++ 
Sbjct: 1  MRYYGTITRWNSKRGFGAATIE---DTGQEIF-----LALAAFTTLTRLPAEGQHISFNI 52

Query: 57 VQNDANGKYSAENL 70
           +    G+  AEN+
Sbjct: 53 TEG-RRGRKEAENV 65


>gi|71281569|ref|YP_266916.1| cold shock DNA-binding domain-containing protein [Colwellia
          psychrerythraea 34H]
 gi|71147309|gb|AAZ27782.1| cold-shock DNA-binding domain family protein [Colwellia
          psychrerythraea 34H]
          Length = 201

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G +  +N DK +GFITP GS   GD +F+H++A+ +          ++++  +Q++
Sbjct: 1  MRLTGKLIRWNTDKAFGFITPNGS---GDTIFIHKTALKNRN-RTPKINDIISFSVIQDN 56

Query: 61 ANGKYSAE 68
            G+Y A+
Sbjct: 57 Q-GRYCAD 63


>gi|325287710|ref|YP_004263500.1| Cold-shock protein DNA-binding protein [Cellulophaga lytica DSM
           7489]
 gi|324323164|gb|ADY30629.1| Cold-shock protein DNA-binding protein [Cellulophaga lytica DSM
           7489]
          Length = 149

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V  G + +++  KG+GFI      E+ +  F+H S +    +  ++E   V+Y+  +   
Sbjct: 87  VRNGKVSFFDTSKGFGFII---DAENNEKYFVHVSGL----IDEISENDKVSYELERGMK 139

Query: 62  NGKYSAENLKLV 73
               +A  +K +
Sbjct: 140 G--MNAVRVKRI 149


>gi|331234220|ref|XP_003329770.1| hypothetical protein PGTG_11520 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309308760|gb|EFP85351.1| hypothetical protein PGTG_11520 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 946

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDY 56
           G  K YN DKG GF+  +   +   DV +H + + S     +L +G++V Y  
Sbjct: 290 GRCKMYNCDKGVGFLIDDRLDQVPQDVKIHWTDIFSDQEFKSLAKGEIVEYTL 342


>gi|302524815|ref|ZP_07277157.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
 gi|302433710|gb|EFL05526.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
          Length = 71

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M HRG +  +  D+G+G    E     G  ++ H S + + G  +LT G+ V +   + +
Sbjct: 1  MEHRGKVVRWEVDEGWG--ILESPAVDGP-IWAHFSMIEADGFRSLTAGEDVRFAVERAE 57

Query: 61 ANG 63
           +G
Sbjct: 58 QDG 60


>gi|313159124|gb|EFR58499.1| cold-shock DNA-binding domain protein [Alistipes sp. HGB5]
          Length = 145

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 9/67 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG ++ +N DKGYGFI    STE     F H S   +     + EG LVT++  +     
Sbjct: 84  RGRVEHFNTDKGYGFIKDLDSTEK---YFFHISNAPAD----IAEGALVTFETERGQRG- 135

Query: 64  KYSAENL 70
             +A N+
Sbjct: 136 -LNAVNI 141


>gi|257053888|ref|YP_003131721.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
          12940]
 gi|256692651|gb|ACV12988.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
          12940]
          Length = 64

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
          +  G++ ++N   GYGFI  + + +   DVF H   V   G  +L EGQ
Sbjct: 1  MATGTVDFFNDTGGYGFIETDDADD---DVFFHMEDV---GGPDLEEGQ 43


>gi|260770385|ref|ZP_05879318.1| predicted membrane protein [Vibrio furnissii CIP 102972]
 gi|260615723|gb|EEX40909.1| predicted membrane protein [Vibrio furnissii CIP 102972]
          Length = 197

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G I  +N  KGYGFIT +     G  +F H S V   G       + V +   + +
Sbjct: 1  MAISGKISEWNDAKGYGFITVDNYR--GK-IFFHISDVQGHGRR-PKINEAVHFKLAK-E 55

Query: 61 ANGKYSAENLK 71
          +NG   A +++
Sbjct: 56 SNGSLRAIDIE 66


>gi|284166832|ref|YP_003405111.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
 gi|284016487|gb|ADB62438.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica
          DSM 5511]
          Length = 64

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
          + +G++ ++N   GYGFI  + + E   DVF H   V   G  +L EGQ
Sbjct: 1  MAQGTVAFFNDTGGYGFIETDDADE---DVFFHMEDV---GGPDLEEGQ 43


>gi|302531785|ref|ZP_07284127.1| predicted protein [Streptomyces sp. AA4]
 gi|302440680|gb|EFL12496.1| predicted protein [Streptomyces sp. AA4]
          Length = 146

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG++  +N   GYG+I P+   + G+DV+    +  + G   +T GQ V ++  +  A+ 
Sbjct: 84  RGTVLIFNVRDGYGYIRPD---DGGEDVY--FDSRDAEG--PITSGQRVEFE-DKPQADA 135

Query: 64  KYSA 67
           + +A
Sbjct: 136 RPAA 139


>gi|321475491|gb|EFX86454.1| hypothetical protein DAPPUDRAFT_7593 [Daphnia pulex]
          Length = 114

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G IK +   KG+GFI      + G+D+F+H S +   G +    G  V++  +Q   
Sbjct: 34 IEHGVIKSFCRVKGHGFI----KKDDGEDIFVHVSDI--DGEYVPRVGDQVSFRKLQIPP 87

Query: 62 N-GKYSAENLKL 72
             K+ A ++++
Sbjct: 88 KMEKFQAVHVQI 99


>gi|88803163|ref|ZP_01118689.1| cold shock protein, putative DNA-binding protein [Polaribacter
           irgensii 23-P]
 gi|88780729|gb|EAR11908.1| cold shock protein, putative DNA-binding protein [Polaribacter
           irgensii 23-P]
          Length = 150

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V +G + +++  KG+GFI      E+ +  F H S +    + ++ E   V+++  +   
Sbjct: 88  VRKGKVSFFDSSKGFGFII---DMENNEKYFTHVSGL----IDDIVENDKVSFEL-ERGM 139

Query: 62  NGKYSAENLKL 72
            G  + +  K+
Sbjct: 140 RGMNAVKVTKI 150


>gi|315181452|gb|ADT88365.1| predicted membrane protein [Vibrio furnissii NCTC 11218]
          Length = 197

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G I  +N  KGYGFIT +     G  +F H S V   G       + V +   + +
Sbjct: 1  MAISGKISEWNDAKGYGFITVDNYR--GK-IFFHISDVQGHGRR-PKINEAVHFKLAK-E 55

Query: 61 ANGKYSAENLK 71
          +NG   A +++
Sbjct: 56 SNGSLRAIDIE 66


>gi|47222740|emb|CAG01707.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 834

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFIT E        +F H   V   GL  L  G  V +  V N   GK+SA N++ + +
Sbjct: 646 FGFITYEVG--ESKKLFFHVKEVQ-DGLE-LQTGDEVEFTVVLNQRTGKFSACNVRRISE 701

Query: 76  S 76
           +
Sbjct: 702 A 702



 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKIGDDVEFEVAPDRRTGKPIAVKLLKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|262380474|ref|ZP_06073628.1| conserved hypothetical protein [Acinetobacter radioresistens
          SH164]
 gi|262297920|gb|EEY85835.1| conserved hypothetical protein [Acinetobacter radioresistens
          SH164]
          Length = 206

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ +KGYGFI P    +    VFLH    A  G   +  G  + Y  V  
Sbjct: 2  MRDQGRLVEWFD-EKGYGFIQPNEPDKGR--VFLHIKDFARPGPRPII-GCALEY-LVIL 56

Query: 60 DANGKYSAENLK 71
          DA G+Y A+ + 
Sbjct: 57 DAQGRYRAQQVT 68


>gi|255320259|ref|ZP_05361444.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
 gi|255302698|gb|EET81930.1| cold-shock DNA-binding domain protein [Acinetobacter
          radioresistens SK82]
          Length = 206

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++ +KGYGFI P    +    VFLH    A  G   +  G  + Y  V  
Sbjct: 2  MRDQGRLVEWFD-EKGYGFIQPNEPDKGR--VFLHIKDFARPGPRPII-GCALEY-LVIL 56

Query: 60 DANGKYSAENLK 71
          DA G+Y A+ + 
Sbjct: 57 DAQGRYRAQQVT 68


>gi|262373361|ref|ZP_06066640.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
 gi|262313386|gb|EEY94471.1| cold shock domain-containing protein CspD [Acinetobacter junii
          SH205]
          Length = 97

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
          ++G +K YNPDKG+GFI          D+F H S   AS G       + V +  ++N  
Sbjct: 6  YQGKVKQYNPDKGFGFIATTEG-----DIFFHISDFPASEG--EPKRNEKVKFVALEN-- 56

Query: 62 NGKYSAENLKLVPK 75
          NGK+ A  ++ V  
Sbjct: 57 NGKFKAVQIERVDP 70


>gi|66566223|ref|XP_397449.2| PREDICTED: cold shock domain-containing protein E1 [Apis mellifera]
          Length = 890

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF+  E   + G  +F H S V    +  L  G  V +  + N   GK SA N
Sbjct: 775 DAVKGPFGFLAYE--VDEGKKLFFHMSEVRDHAI--LQPGDQVEFVLITNQRTGKSSACN 830

Query: 70  LKLVPKSSN 78
           +  +  +  
Sbjct: 831 VTRLSDAVQ 839



 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 135 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKIAP 190

Query: 76  S 76
            
Sbjct: 191 E 191



 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S   S     L  G  V +  +Q   NGK  A N+  +P 
Sbjct: 286 FGFIER---ADVVKEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 339

Query: 76  SS 77
            S
Sbjct: 340 GS 341


>gi|312198421|ref|YP_004018482.1| Cold-shock protein DNA-binding protein [Frankia sp. EuI1c]
 gi|311229757|gb|ADP82612.1| Cold-shock protein DNA-binding protein [Frankia sp. EuI1c]
          Length = 137

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQNDANGK-YSA 67
          ++  +GYGFI P G    G+D+FLH + +      +L T G  + ++  Q D   K   A
Sbjct: 4  FDQVRGYGFIAPTG---GGEDIFLHANDLLVD--KHLVTAGVTMEFEVEQGDRGPKATGA 58

Query: 68 ENLKLVPKSS 77
            ++  P ++
Sbjct: 59 RLVRSAPGAA 68


>gi|119946476|ref|YP_944156.1| hypothetical protein Ping_2851 [Psychromonas ingrahamii 37]
 gi|119865080|gb|ABM04557.1| hypothetical protein DUF1294 [Psychromonas ingrahamii 37]
          Length = 207

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G +  +N DKG+GF+ P G    G+  F+H  A  S  L  +  G ++ Y+ V++ 
Sbjct: 1  MKLQGKVTNWNDDKGFGFVDPNG---GGNRAFIHIKAFTSGSLRPVN-GDIIIYELVRDQ 56

Query: 61 ANGKYSAENLK 71
           N +Y A+ +K
Sbjct: 57 NN-RYQADKIK 66


>gi|325109282|ref|YP_004270350.1| cold-shock DNA-binding protein family [Planctomyces brasiliensis
          DSM 5305]
 gi|324969550|gb|ADY60328.1| cold-shock DNA-binding protein family [Planctomyces brasiliensis
          DSM 5305]
          Length = 65

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 29 DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
           D+F H S +  +   +L EGQ V+++        +  AEN+KLV
Sbjct: 23 KDLFFHMSNLEGSRFDDLQEGQRVSFNEGSGPKGPR--AENVKLV 65


>gi|16760655|ref|NP_456272.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. CT18]
 gi|16764598|ref|NP_460213.1| cold shock-like protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|29141586|ref|NP_804928.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
 gi|161614377|ref|YP_001588342.1| hypothetical protein SPAB_02126 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|200390149|ref|ZP_03216760.1| conserved domain protein [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|207857251|ref|YP_002243902.1| cold shock protein CspH [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|213053010|ref|ZP_03345888.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
 gi|213418364|ref|ZP_03351430.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
 gi|213580471|ref|ZP_03362297.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
 gi|213609947|ref|ZP_03369773.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
 gi|213646143|ref|ZP_03376196.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
 gi|213855314|ref|ZP_03383554.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
 gi|238910937|ref|ZP_04654774.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Tennessee str. CDC07-0191]
 gi|289803991|ref|ZP_06534620.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
 gi|60391952|sp|P0A1D9|CSPH_SALTY RecName: Full=Cold shock-like protein CspH
 gi|60391953|sp|P0A1E0|CSPH_SALTI RecName: Full=Cold shock-like protein CspH
 gi|25296114|pir||AC0718 probable cold shock protein cspH [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|6180041|gb|AAF05759.1|AF191799_1 major cold shock protein CspH [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
 gi|2228815|gb|AAB61944.1| major cold-shock protein CspH [Salmonella enterica subsp.
          enterica serovar Typhimurium]
 gi|16419762|gb|AAL20172.1| homology with cold shock proteins [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|16502951|emb|CAD02116.1| putative cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29137213|gb|AAO68777.1| putative cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|161363741|gb|ABX67509.1| hypothetical protein SPAB_02126 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|199602594|gb|EDZ01140.1| conserved domain protein [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|206709054|emb|CAR33385.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|261246455|emb|CBG24265.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267993093|gb|ACY87978.1| cold shock-like protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|301157784|emb|CBW17277.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|312912232|dbj|BAJ36206.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. T000240]
 gi|320086288|emb|CBY96062.1| Cold shock-like protein cspG CPS-G [Salmonella enterica subsp.
          enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322616634|gb|EFY13543.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315996572]
 gi|322619851|gb|EFY16725.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-1]
 gi|322622419|gb|EFY19264.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-3]
 gi|322627943|gb|EFY24733.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-4]
 gi|322632959|gb|EFY29702.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-1]
 gi|322636795|gb|EFY33498.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-2]
 gi|322641394|gb|EFY38033.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 531954]
 gi|322645169|gb|EFY41698.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. NC_MB110209-0054]
 gi|322650110|gb|EFY46524.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. OH_2009072675]
 gi|322655684|gb|EFY51986.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. CASC_09SCPH15965]
 gi|322660008|gb|EFY56247.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 19N]
 gi|322665424|gb|EFY61612.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 81038-01]
 gi|322667598|gb|EFY63759.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. MD_MDA09249507]
 gi|322673608|gb|EFY69710.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 414877]
 gi|322677534|gb|EFY73598.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 366867]
 gi|322679801|gb|EFY75840.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 413180]
 gi|322687274|gb|EFY83246.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 446600]
 gi|323129513|gb|ADX16943.1| putative cold shock protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
 gi|323192391|gb|EFZ77621.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609458-1]
 gi|323199469|gb|EFZ84562.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556150-1]
 gi|323203657|gb|EFZ88679.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609460]
 gi|323208800|gb|EFZ93738.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 507440-20]
 gi|323214140|gb|EFZ98900.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556152]
 gi|323217776|gb|EGA02491.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB101509-0077]
 gi|323218913|gb|EGA03424.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB102109-0047]
 gi|323224984|gb|EGA09240.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
 gi|323229579|gb|EGA13702.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB111609-0052]
 gi|323232802|gb|EGA16898.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009083312]
 gi|323240160|gb|EGA24204.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009085258]
 gi|323242853|gb|EGA26874.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315731156]
 gi|323247785|gb|EGA31724.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2009159199]
 gi|323254331|gb|EGA38148.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008282]
 gi|323256109|gb|EGA39846.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008283]
 gi|323259431|gb|EGA43067.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008284]
 gi|323267027|gb|EGA50512.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008285]
 gi|323272131|gb|EGA55545.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008287]
 gi|332988135|gb|AEF07118.1| cold shock-like protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
          Length = 70

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G G ITP   ++   DV +H SA        L  G  V +  + N   G
Sbjct: 6  TGIVKTFDCKSGKGLITP---SDGRKDVQVHISACRQHETEALIPGIRVEFCRI-NGLRG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PTAANV 67


>gi|161618395|ref|YP_001592282.1| cold shock protein [Brucella canis ATCC 23365]
 gi|161335206|gb|ABX61511.1| cold shock protein [Brucella canis ATCC 23365]
          Length = 36

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 39 ASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
            AGL +L EGQ V Y+ V +  +GK +A NL+
Sbjct: 2  ERAGLHSLVEGQKVGYEVVADRRSGKSAAANLE 34


>gi|207738540|ref|YP_002256933.1| transcription regulator protein [Ralstonia solanacearum IPO1609]
 gi|206591908|emb|CAQ58814.1| transcription regulator protein [Ralstonia solanacearum IPO1609]
          Length = 137

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 1  MVHRGSIKWYNPDKGYGF 18
           +  G++KW+N  KG+GF
Sbjct: 42 CMATGTVKWFNETKGFGF 59


>gi|333008660|gb|EGK28126.1| cold shock-like protein cspG [Shigella flexneri K-272]
          Length = 70

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G GFI P    +   +V +H SA     +  L  G  V +  V N   G
Sbjct: 6  TGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRDVEVLIPGLRVEFCRV-NGLRG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PTAANV 67


>gi|224827101|ref|ZP_03700198.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
 gi|224600767|gb|EEG06953.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002]
          Length = 202

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36
          M  +G +  ++  +G+GFITP G    G +VF+H S
Sbjct: 1  MRFQGRLTRWDDARGFGFITPNG---GGAEVFVHIS 33


>gi|241758644|ref|ZP_04756758.1| cold-shock DNA-binding domain protein [Neisseria flavescens
          SK114]
 gi|241321155|gb|EER57351.1| cold-shock DNA-binding domain protein [Neisseria flavescens
          SK114]
          Length = 169

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 13/74 (17%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL----TEGQLVTYDY 56
          M + G+I  +N  +G+G  T E   ++G ++F     +A A    L     EGQ ++++ 
Sbjct: 1  MRYYGTITRWNSKRGFGAATIE---DTGQEIF-----LALAAFTTLTRLPAEGQHISFNI 52

Query: 57 VQNDANGKYSAENL 70
           +    G+  AEN+
Sbjct: 53 TEG-RRGRKEAENV 65


>gi|145629455|ref|ZP_01785253.1| cold shock-like protein CspD [Haemophilus influenzae 22.1-21]
 gi|144978298|gb|EDJ88062.1| cold shock-like protein CspD [Haemophilus influenzae 22.1-21]
          Length = 34

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVF 32
          +  G +KW+N  KG+GFI+ EG      D+F
Sbjct: 1  MEIGIVKWFNNAKGFGFISAEGVD---ADIF 28


>gi|302668611|ref|YP_003833059.1| cold shock domain protein CspD3 [Butyrivibrio proteoclasticus
          B316]
 gi|302397575|gb|ADL36477.1| cold shock domain protein CspD3 [Butyrivibrio proteoclasticus
          B316]
          Length = 286

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G IK Y  D+G+GFI  +       D F H S V   G  ++  G  V +D   N+    
Sbjct: 3  GIIKKYYDDRGFGFIKADDR-----DFFFHVSDVV-NGTNSIVTGIRVRFDVGSNNKG-- 54

Query: 65 YSAENLKLVPKS 76
            AEN+K++  S
Sbjct: 55 EKAENVKIISDS 66


>gi|325279878|ref|YP_004252420.1| Cold-shock protein DNA-binding protein [Odoribacter splanchnicus
           DSM 20712]
 gi|324311687|gb|ADY32240.1| Cold-shock protein DNA-binding protein [Odoribacter splanchnicus
           DSM 20712]
          Length = 150

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V +G ++++N  KGYGFI     TE     F H S      L  L E  +V +D  +   
Sbjct: 83  VRKGRVEYFNVSKGYGFIKDLSGTEK---YFFHVS----NALSELVENAIVIFDL-ERGK 134

Query: 62  NGKYSAENLKLVPKSSN 78
            G  +A N+ +  ++++
Sbjct: 135 RG-MNAINICISERTAD 150


>gi|319637794|ref|ZP_07992560.1| cold-shock DNA-binding domain-containing protein [Neisseria
          mucosa C102]
 gi|317400949|gb|EFV81604.1| cold-shock DNA-binding domain-containing protein [Neisseria
          mucosa C102]
          Length = 169

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 13/74 (17%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL----TEGQLVTYDY 56
          M + G+I  +N  +G+G  T E   ++G ++F     +A A    L     EGQ ++++ 
Sbjct: 1  MRYYGTITRWNSKRGFGAATIE---DTGQEIF-----LALAAFTTLTRLPAEGQHISFNI 52

Query: 57 VQNDANGKYSAENL 70
           +    G+  AEN+
Sbjct: 53 TEG-RRGRKEAENV 65


>gi|221114043|ref|XP_002157672.1| PREDICTED: similar to Cold shock domain-containing protein E1,
           partial [Hydra magnipapillata]
          Length = 425

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 14  KG-YGFITPEGSTESGDDVFLHRSA---VASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           KG +GFI+ +   + G  +F H S    + S+ L     G  V++  V N  NGK SA  
Sbjct: 307 KGQFGFISYDN--DEGKRIFFHMSELIDIHSSDLRT---GDEVSFAIVNNHKNGKKSAIR 361

Query: 70  LKLV 73
           ++ +
Sbjct: 362 VQKI 365


>gi|157093143|gb|ABV22226.1| cold shock protein-like [Karlodinium micrum]
 gi|157093145|gb|ABV22227.1| cold shock protein-like [Karlodinium micrum]
          Length = 210

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           ++G IK +   KGYGFIT +     G D+F  +S V+   L  L+  Q  T+     D  
Sbjct: 73  YKGRIKSFVQQKGYGFITCDALQ--GQDIFFMKSDVSERALPILSANQDCTFTLHLGDRG 130

Query: 63  GKYSAENLKLVPKSSN 78
               A+++ LV  + N
Sbjct: 131 --PQAKDITLVGAAGN 144



 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G++K YN  KG+GF+       +G DVFL    +   G   ++ G  +       +  GK
Sbjct: 6  GTVKSYNVHKGWGFVEC-----NGTDVFLMHKEL---GGKVVSPGDKLKLTITTGE-KGK 56

Query: 65 YSAENLKLVPKSSN 78
            A N+ ++  +  
Sbjct: 57 PQASNVSVISSAGE 70


>gi|91225301|ref|ZP_01260469.1| hypothetical protein V12G01_21078 [Vibrio alginolyticus 12G01]
 gi|91189940|gb|EAS76212.1| hypothetical protein V12G01_21078 [Vibrio alginolyticus 12G01]
          Length = 155

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          ++W + ++G+GFI    S E   D+F+H S     G      G  V +         K S
Sbjct: 6  VRWVD-ERGFGFI---NSNELDGDIFVHVSKFKK-GYRRPRIGDQVEFQLA--SVQPKLS 58

Query: 67 AENLKLV---PKSSN 78
          AE+ +LV   P+ SN
Sbjct: 59 AESAQLVGVKPQKSN 73


>gi|281347702|gb|EFB23286.1| hypothetical protein PANDA_020808 [Ailuropoda melanoleuca]
          Length = 341

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 24  STESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAEN 69
             ++ +DVF+H++A+        L ++ +G+ V +D V+ +  G  +A  
Sbjct: 80  GNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE-KGAEAANV 128


>gi|170725465|ref|YP_001759491.1| cold-shock DNA-binding domain-containing protein [Shewanella
          woodyi ATCC 51908]
 gi|169810812|gb|ACA85396.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
          51908]
          Length = 203

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58
          M  +G  ++W +  KG+GFI P G       VF+H  +         L +   VT+   +
Sbjct: 1  MKFKGKLVQW-DDVKGFGFIQPLGQQTQ---VFVHIKSFKYQPRRPQLQD--TVTFTLTK 54

Query: 59 NDANGKYSAENLKLVPKSSN 78
           D  G+ +A   K++   + 
Sbjct: 55 -DKQGRETAHQAKIIDAKAK 73


>gi|332526887|ref|ZP_08402980.1| cold-shock DNA-binding domain-containing protein [Rubrivivax
          benzoatilyticus JA2]
 gi|332111329|gb|EGJ11313.1| cold-shock DNA-binding domain-containing protein [Rubrivivax
          benzoatilyticus JA2]
          Length = 210

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +N D+G+G I    ST+ G  +F+H S           + Q V+++  Q    GK +   
Sbjct: 15 WNDDRGFGTIE---STQGGKPIFMHISEWPRDAPRPRVD-QRVSFEIEQG-PKGKRATRI 69

Query: 70 LKLVP 74
            LVP
Sbjct: 70 QPLVP 74


>gi|331698343|ref|YP_004334582.1| Cold-shock protein DNA-binding protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326953032|gb|AEA26729.1| Cold-shock protein DNA-binding protein [Pseudonocardia
          dioxanivorans CB1190]
          Length = 66

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G++ W++P +  G IT     + G +V +  + +   G  +L  G  VT+  V+   
Sbjct: 1  MVDGTVTWFDPRRRIGVIT----LDDGTEVSVSGAQIDGGGQQSLCPGDRVTFTLVEG-P 55

Query: 62 NGKYS 66
          +G ++
Sbjct: 56 DGPHA 60


>gi|330959678|gb|EGH59938.1| cold shock domain-containing protein [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 268

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +  +   KGYGFI+ +     G+  F+H+  V   G   LT GQ V +        G
Sbjct: 12 EGEVVSFVVSKGYGFISGD----DGERYFVHQKDVQ--GGETLTSGQRVAF-VPTPSPKG 64

Query: 64 KYSAENL 70
            +   +
Sbjct: 65 SKARHVV 71


>gi|76803990|gb|ABA55933.1| cold shock domain family protein [Vibrio sp. DAT722]
          Length = 155

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          ++W + ++G+GFI    S E   D+F+H S     G      G  V +       + K S
Sbjct: 6  VRWVD-ERGFGFI---NSNELDGDIFVHVSKFKK-GYRRPRIGDQVEFQLA--SVHPKLS 58

Query: 67 AENLKLV---PKSSN 78
          AE+ +LV   P+ SN
Sbjct: 59 AESAQLVGVKPQKSN 73


>gi|84387020|ref|ZP_00990043.1| predicted membrane protein [Vibrio splendidus 12B01]
 gi|84378095|gb|EAP94955.1| predicted membrane protein [Vibrio splendidus 12B01]
          Length = 194

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 7/70 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDAN 62
          +G I  +N DKGYGFI+  G       VF+H S+V ++     L +   V ++  + D+ 
Sbjct: 2  KGKIIEWNDDKGYGFISSLGGELK---VFIHASSVKNSRRRPALYDN--VMFEVKE-DSK 55

Query: 63 GKYSAENLKL 72
          G+++A+N+ +
Sbjct: 56 GRFNAQNVVI 65


>gi|328853198|gb|EGG02338.1| hypothetical protein MELLADRAFT_91428 [Melampsora larici-populina
           98AG31]
          Length = 929

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDY 56
           G  K YN DKG GF+  +   E   DV +H + + S     +L +G++V Y  
Sbjct: 417 GRCKMYNCDKGVGFLIDDDLEEVPYDVKIHWTDLYSDQEFKSLAKGEVVEYTL 469


>gi|257053889|ref|YP_003131722.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
          12940]
 gi|256692652|gb|ACV12989.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM
          12940]
          Length = 64

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
          +  G++ ++N   GYGFI  E + E   DVF H   V   G  +L EGQ
Sbjct: 1  MATGTVDFFNDTGGYGFIETEDADE---DVFFHMEDV---GGPDLEEGQ 43


>gi|297520670|ref|ZP_06939056.1| major cold shock protein [Escherichia coli OP50]
          Length = 26

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 4  RGSIKWYNPDKGYGFITPEGS 24
           G +KW+N DKG+GFITP+  
Sbjct: 6  TGIVKWFNADKGFGFITPDDG 26


>gi|301106296|ref|XP_002902231.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262098851|gb|EEY56903.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1293

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 15  GYGFITPEGSTESG--DDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
           G+GFI P  +      +++F H   +     L  L EG  V Y    ++   K  A  + 
Sbjct: 923 GFGFIQPAQTVPGTLEENLFFHIKEITTGQTLAELKEGTEVQYTVFVDEKKKKNRATAIS 982

Query: 72  LVPKSS 77
           +VP  +
Sbjct: 983 VVPTGT 988


>gi|119897463|ref|YP_932676.1| hypothetical protein azo1172 [Azoarcus sp. BH72]
 gi|119669876|emb|CAL93789.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 51

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37
          M H+G I  +  DKG+GFITP      G+ VF+H SA
Sbjct: 1  MRHQGHISSWKDDKGFGFITP---AAGGEKVFVHISA 34


>gi|51244089|ref|YP_063973.1| hypothetical protein DP0237 [Desulfotalea psychrophila LSv54]
 gi|50875126|emb|CAG34966.1| hypothetical cold-shock protein [Desulfotalea psychrophila LSv54]
          Length = 195

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 4  RGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          +G I KW   ++G+GFI  E S +S   +F+H SA   A       G  ++Y  ++ D N
Sbjct: 7  QGKIEKWV-GERGFGFIKSEKSAKS---IFVHISAFDRAISRAPRVGDTISY-CLRTDHN 61

Query: 63 GKYSAEN 69
          GK  A +
Sbjct: 62 GKTKAVD 68


>gi|326424037|ref|NP_761361.2| Cold shock domain family protein [Vibrio vulnificus CMCP6]
 gi|319999414|gb|AAO10888.2| Cold shock domain family protein [Vibrio vulnificus CMCP6]
          Length = 161

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAENL 70
           ++G+GFI  +       DVF+H S     G      G  V +    N       SA  +
Sbjct: 16 DERGFGFIKSDELD---GDVFVHISKF-PQGYRRPQVGDHVEFHLANNQPKLSAASARLI 71

Query: 71 KLVPKSSN 78
           + P+ +N
Sbjct: 72 GVEPQKTN 79


>gi|77360541|ref|YP_340116.1| cold shock DNA-binding domain-containing protein
          [Pseudoalteromonas haloplanktis TAC125]
 gi|76875452|emb|CAI86673.1| putative cold-shock DNA-binding domain [Pseudoalteromonas
          haloplanktis TAC125]
          Length = 203

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +++G +  +N ++GYGFI    S+    D F+H S++          G  + ++    D 
Sbjct: 1  MNKGLLTSWNDNRGYGFI---KSSSVAHDTFIHISSLKHMSRK-PKVGDTIYFEVA-TDP 55

Query: 62 NGKYSAENLKL 72
          NGK  A N ++
Sbjct: 56 NGKSKAVNCRI 66


>gi|168239159|ref|ZP_02664217.1| conserved domain protein [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|194737414|ref|YP_002114257.1| hypothetical protein SeSA_A1329 [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|204930811|ref|ZP_03221684.1| conserved domain protein [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|194712916|gb|ACF92137.1| conserved domain protein [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|197288141|gb|EDY27528.1| conserved domain protein [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|204320270|gb|EDZ05474.1| conserved domain protein [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
          Length = 70

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G G ITP   ++   DV +H SA +      L  G  V +  + N   G
Sbjct: 6  TGIVKTFDCKSGKGLITP---SDGRKDVQVHISAFSQHETEALIPGIRVEFCRI-NGLRG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PTAANV 67


>gi|256424147|ref|YP_003124800.1| cold-shock DNA-binding domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256039055|gb|ACU62599.1| cold-shock DNA-binding domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 147

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G + ++N  KG+GFI  + S ES   VF H + +A      + E   V++   +    G
Sbjct: 83  TGVVSFFNLSKGFGFINDDSSKES---VFFHMNQLAHP----VKEKDRVSF-LREKGPRG 134

Query: 64  KYSAENLKLV 73
            ++A N+  +
Sbjct: 135 -FNAINVTKI 143


>gi|326203825|ref|ZP_08193687.1| Cold-shock protein DNA-binding [Clostridium papyrosolvens DSM 2782]
 gi|325985923|gb|EGD46757.1| Cold-shock protein DNA-binding [Clostridium papyrosolvens DSM 2782]
          Length = 436

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G +K Y  ++G+GFI      +   + + H S V      N+ EG  VT+   ++    
Sbjct: 371 KGKVKKYVSERGFGFI-----KDREKEFYFHISDVYQTHQKNVCEGADVTFSIQESTKG- 424

Query: 64  KYSAENLKLV 73
              A+ +K+V
Sbjct: 425 -PVAKQIKVV 433


>gi|126640824|ref|YP_001083808.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978]
 gi|184157043|ref|YP_001845382.1| putative cold shock protein [Acinetobacter baumannii ACICU]
 gi|332872618|ref|ZP_08440586.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          6014059]
 gi|126386708|gb|ABO11206.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978]
 gi|183208637|gb|ACC56035.1| putative cold shock protein [Acinetobacter baumannii ACICU]
 gi|322506942|gb|ADX02396.1| Putative cold shock protein [Acinetobacter baumannii 1656-2]
 gi|323516809|gb|ADX91190.1| putative cold shock protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332739147|gb|EGJ70006.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          6014059]
          Length = 97

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
          + G +K YN DKG+GFI+         D+F H S   AS G       + V +  +  D 
Sbjct: 6  YTGRVKQYNADKGFGFISTTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56

Query: 62 NGKYSAENLKLVPK 75
           GK+ A  ++ +  
Sbjct: 57 RGKFKAVKIERIDP 70


>gi|95929682|ref|ZP_01312424.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
 gi|95134379|gb|EAT16036.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans
          DSM 684]
          Length = 214

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  RG+I  +N DKGYGFI P   ++    +F+H     S         QLV Y     D
Sbjct: 8  MRKRGTITSWNKDKGYGFILPNSGSKQ---IFVHIKDF-SNRHRQPEVEQLVNYS-ESVD 62

Query: 61 ANGKYSAENLKLVPKSSN 78
            G+  A N   V   + 
Sbjct: 63 RQGRPCAINATRVGDGTE 80


>gi|323976632|gb|EGB71720.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TW10509]
          Length = 70

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G GFI P    +   +V +H SA        L  G  V +  V N   G
Sbjct: 6  TGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRDAEVLIPGLRVEFCRV-NGLRG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PTAANV 67


>gi|320105220|ref|YP_004180811.1| cold-shock DNA-binding domain-containing protein [Isosphaera
          pallida ATCC 43644]
 gi|319752502|gb|ADV64262.1| cold-shock DNA-binding domain protein [Isosphaera pallida ATCC
          43644]
          Length = 222

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN---LTEGQLVTYDYVQND 60
          RG +  ++P +G+GF+  E + +    VF H SA+ SA   +      G ++++   + D
Sbjct: 21 RGVVTRFDPKRGFGFVVVERTRQK---VFFHVSAIRSAAAQSRSQPAPGVVLSFQIDETD 77

Query: 61 ANGKYSAE 68
            G  + E
Sbjct: 78 PRGPRAIE 85


>gi|126734566|ref|ZP_01750312.1| cold shock protein [Roseobacter sp. CCS2]
 gi|126715121|gb|EBA11986.1| cold shock protein [Roseobacter sp. CCS2]
          Length = 151

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW++  +G+GF+  +G      D  LH++ +   G  ++ EG  V + Y Q+  NG   
Sbjct: 1  MKWFDAYRGFGFVVIDGIE---TDFLLHQNILHGFGRTSIAEGSSVEFAY-QSTENGFKI 56

Query: 67 AENLKLVPKS 76
           E   + P S
Sbjct: 57 IEIFAIAPPS 66



 Score = 43.4 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 6   SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            +KW++P KGYGF+   G  E   D+F+  + +  + L +L  G  +     + +  
Sbjct: 88  RVKWFDPSKGYGFVNAFGCAE---DIFVGAATLRKSMLGDLQSGDALCVQIAETEGR 141


>gi|15800909|ref|NP_286925.1| cold shock-like protein [Escherichia coli O157:H7 EDL933]
 gi|15830398|ref|NP_309171.1| cold shock-like protein [Escherichia coli O157:H7 str. Sakai]
 gi|16128955|ref|NP_415509.1| stress protein, member of the CspA-family [Escherichia coli str.
          K-12 substr. MG1655]
 gi|24112401|ref|NP_706911.1| cold shock-like protein [Shigella flexneri 2a str. 301]
 gi|26247007|ref|NP_753047.1| cold shock-like protein cspH [Escherichia coli CFT073]
 gi|30062525|ref|NP_836696.1| cold shock-like protein [Shigella flexneri 2a str. 2457T]
 gi|74311545|ref|YP_309964.1| cold shock-like protein [Shigella sonnei Ss046]
 gi|82544688|ref|YP_408635.1| cold shock-like protein [Shigella boydii Sb227]
 gi|82776278|ref|YP_402627.1| cold shock-like protein [Shigella dysenteriae Sd197]
 gi|89107839|ref|AP_001619.1| stress protein, member of the CspA-family [Escherichia coli str.
          K-12 substr. W3110]
 gi|91210079|ref|YP_540065.1| cold shock-like protein H [Escherichia coli UTI89]
 gi|110641170|ref|YP_668900.1| cold shock-like protein CspH [Escherichia coli 536]
 gi|110805002|ref|YP_688522.1| cold shock-like protein [Shigella flexneri 5 str. 8401]
 gi|157158514|ref|YP_001462220.1| cold shock DNA-binding protein [Escherichia coli E24377A]
 gi|157160507|ref|YP_001457825.1| cold shock DNA-binding protein [Escherichia coli HS]
 gi|168747397|ref|ZP_02772419.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|168754309|ref|ZP_02779316.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|168763225|ref|ZP_02788232.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|168767486|ref|ZP_02792493.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|168773675|ref|ZP_02798682.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|168781005|ref|ZP_02806012.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|168787494|ref|ZP_02812501.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC869]
 gi|168800618|ref|ZP_02825625.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC508]
 gi|170020612|ref|YP_001725566.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli ATCC 8739]
 gi|170080647|ref|YP_001729967.1| CspA family stress protein [Escherichia coli str. K-12 substr.
          DH10B]
 gi|170684041|ref|YP_001744187.1| cold-shock DNA-binding domain-containing protein CspH
          [Escherichia coli SMS-3-5]
 gi|187730710|ref|YP_001880814.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94]
 gi|188494766|ref|ZP_03002036.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|191166611|ref|ZP_03028440.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|191172410|ref|ZP_03033951.1| cold-shock DNA-binding domain protein CspH [Escherichia coli F11]
 gi|193066319|ref|ZP_03047369.1| cold shock DNA-binding protein [Escherichia coli E22]
 gi|193070785|ref|ZP_03051719.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194429846|ref|ZP_03062359.1| cold shock DNA-binding protein [Escherichia coli B171]
 gi|194438085|ref|ZP_03070178.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|195935246|ref|ZP_03080628.1| CspA family stress protein [Escherichia coli O157:H7 str. EC4024]
 gi|208807470|ref|ZP_03249807.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208815635|ref|ZP_03256814.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208822271|ref|ZP_03262590.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209400788|ref|YP_002269714.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4115]
 gi|209918241|ref|YP_002292325.1| cold shock-like protein [Escherichia coli SE11]
 gi|215486105|ref|YP_002328536.1| stress protein, member of the CspA-family [Escherichia coli
          O127:H6 str. E2348/69]
 gi|217324901|ref|ZP_03440985.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          TW14588]
 gi|218553575|ref|YP_002386488.1| stress protein, member of the CspA-family [Escherichia coli IAI1]
 gi|218557879|ref|YP_002390792.1| stress protein, member of the CspA-family [Escherichia coli S88]
 gi|218694522|ref|YP_002402189.1| stress protein, member of the CspA-family [Escherichia coli
          55989]
 gi|218700499|ref|YP_002408128.1| stress protein, member of the CspA-family [Escherichia coli
          IAI39]
 gi|218704405|ref|YP_002411924.1| stress protein, member of the CspA-family [Escherichia coli
          UMN026]
 gi|227884059|ref|ZP_04001864.1| cold shock family protein [Escherichia coli 83972]
 gi|237707033|ref|ZP_04537514.1| cold shock DNA-binding protein [Escherichia sp. 3_2_53FAA]
 gi|238900248|ref|YP_002926044.1| stress protein, member of the CspA-family [Escherichia coli
          BW2952]
 gi|253773982|ref|YP_003036813.1| cold-shock DNA-binding domain protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161101|ref|YP_003044209.1| stress protein, member of the CspA-family [Escherichia coli B
          str. REL606]
 gi|254792245|ref|YP_003077082.1| stress protein, member of the CspA-family [Escherichia coli
          O157:H7 str. TW14359]
 gi|256018752|ref|ZP_05432617.1| stress protein, member of the CspA-family [Shigella sp. D9]
 gi|256023310|ref|ZP_05437175.1| stress protein, member of the CspA-family [Escherichia sp.
          4_1_40B]
 gi|260843236|ref|YP_003221014.1| stress protein CspH [Escherichia coli O103:H2 str. 12009]
 gi|260854692|ref|YP_003228583.1| stress protein CspH [Escherichia coli O26:H11 str. 11368]
 gi|260867197|ref|YP_003233599.1| stress protein CspH [Escherichia coli O111:H- str. 11128]
 gi|261227160|ref|ZP_05941441.1| stress protein, member of the CspA-family [Escherichia coli
          O157:H7 str. FRIK2000]
 gi|261255726|ref|ZP_05948259.1| stress protein CspH [Escherichia coli O157:H7 str. FRIK966]
 gi|291281987|ref|YP_003498805.1| Cold shock-like protein cspH [Escherichia coli O55:H7 str.
          CB9615]
 gi|293409366|ref|ZP_06652942.1| predicted protein [Escherichia coli B354]
 gi|293414264|ref|ZP_06656913.1| cold shock protein [Escherichia coli B185]
 gi|293433283|ref|ZP_06661711.1| cold shock-like protein cspH [Escherichia coli B088]
 gi|297519755|ref|ZP_06938141.1| Cold shock-like protein cspH [Escherichia coli OP50]
 gi|300819432|ref|ZP_07099629.1| cold-shock DNA-binding domain protein [Escherichia coli MS 107-1]
 gi|300823952|ref|ZP_07104075.1| cold-shock DNA-binding domain protein [Escherichia coli MS 119-7]
 gi|300896361|ref|ZP_07114903.1| cold-shock DNA-binding domain protein [Escherichia coli MS 198-1]
 gi|300902845|ref|ZP_07120793.1| cold-shock DNA-binding domain protein [Escherichia coli MS 84-1]
 gi|300920967|ref|ZP_07137357.1| cold-shock DNA-binding domain protein [Escherichia coli MS 115-1]
 gi|300925326|ref|ZP_07141216.1| cold-shock DNA-binding domain protein [Escherichia coli MS 182-1]
 gi|300929242|ref|ZP_07144721.1| cold-shock DNA-binding domain protein [Escherichia coli MS 187-1]
 gi|300937664|ref|ZP_07152470.1| cold-shock DNA-binding domain protein [Escherichia coli MS 21-1]
 gi|300949635|ref|ZP_07163621.1| cold-shock DNA-binding domain protein [Escherichia coli MS 116-1]
 gi|300957865|ref|ZP_07170041.1| cold-shock DNA-binding domain protein [Escherichia coli MS 175-1]
 gi|300978252|ref|ZP_07174200.1| cold-shock DNA-binding domain protein [Escherichia coli MS 45-1]
 gi|300982794|ref|ZP_07176304.1| cold-shock DNA-binding domain protein [Escherichia coli MS 200-1]
 gi|301022615|ref|ZP_07186486.1| cold-shock DNA-binding domain protein [Escherichia coli MS 196-1]
 gi|301023110|ref|ZP_07186917.1| cold-shock DNA-binding domain protein [Escherichia coli MS 69-1]
 gi|301047757|ref|ZP_07194813.1| cold-shock DNA-binding domain protein [Escherichia coli MS 185-1]
 gi|301302394|ref|ZP_07208525.1| cold-shock DNA-binding domain protein [Escherichia coli MS 124-1]
 gi|301327178|ref|ZP_07220444.1| cold-shock DNA-binding domain protein [Escherichia coli MS 78-1]
 gi|301646376|ref|ZP_07246261.1| cold-shock DNA-binding domain protein [Escherichia coli MS 146-1]
 gi|306812572|ref|ZP_07446765.1| Cold shock-like protein cspH [Escherichia coli NC101]
 gi|307137621|ref|ZP_07496977.1| Cold shock-like protein cspH [Escherichia coli H736]
 gi|309795022|ref|ZP_07689442.1| cold-shock DNA-binding domain protein [Escherichia coli MS 145-7]
 gi|312968953|ref|ZP_07783160.1| cold shock-like protein cspG [Escherichia coli 2362-75]
 gi|331641520|ref|ZP_08342655.1| major cold shock protein Cspa1 [Escherichia coli H736]
 gi|331646243|ref|ZP_08347346.1| conserved domain protein [Escherichia coli M605]
 gi|331657049|ref|ZP_08358011.1| conserved domain protein [Escherichia coli TA206]
 gi|331662396|ref|ZP_08363319.1| major cold shock protein Cspa1 [Escherichia coli TA143]
 gi|331667380|ref|ZP_08368244.1| major cold shock protein Cspa1 [Escherichia coli TA271]
 gi|331672523|ref|ZP_08373312.1| major cold shock protein Cspa1 [Escherichia coli TA280]
 gi|331676779|ref|ZP_08377475.1| conserved domain protein [Escherichia coli H591]
 gi|331682494|ref|ZP_08383113.1| major cold shock protein Cspa1 [Escherichia coli H299]
 gi|332279829|ref|ZP_08392242.1| predicted protein [Shigella sp. D9]
 gi|71154166|sp|P0A984|CSPH_ECO57 RecName: Full=Cold shock-like protein CspH; Short=CSP-H
 gi|71154167|sp|P0A983|CSPH_ECOL6 RecName: Full=Cold shock-like protein CspH; Short=CSP-H
 gi|71154168|sp|P0A982|CSPH_ECOLI RecName: Full=Cold shock-like protein CspH; Short=CSP-H
 gi|71154169|sp|P0A985|CSPH_SHIFL RecName: Full=Cold shock-like protein CspH; Short=CSP-H
 gi|12514253|gb|AAG55536.1|AE005292_9 cold shock-like protein [Escherichia coli O157:H7 str. EDL933]
 gi|26107407|gb|AAN79590.1|AE016758_194 Cold shock-like protein cspH [Escherichia coli CFT073]
 gi|2226345|gb|AAB61742.1| CspH [Escherichia coli str. K-12 substr. W3110]
 gi|2367112|gb|AAC74074.1| stress protein, member of the CspA-family [Escherichia coli str.
          K-12 substr. MG1655]
 gi|13360604|dbj|BAB34567.1| cold shock-like protein [Escherichia coli O157:H7 str. Sakai]
 gi|24051275|gb|AAN42618.1| cold shock-like protein [Shigella flexneri 2a str. 301]
 gi|30040771|gb|AAP16502.1| cold shock-like protein [Shigella flexneri 2a str. 2457T]
 gi|73855022|gb|AAZ87729.1| cold shock-like protein [Shigella sonnei Ss046]
 gi|81240426|gb|ABB61136.1| cold shock-like protein [Shigella dysenteriae Sd197]
 gi|81246099|gb|ABB66807.1| cold shock-like protein [Shigella boydii Sb227]
 gi|85674811|dbj|BAA35755.2| stress protein, member of the CspA-family [Escherichia coli str.
          K12 substr. W3110]
 gi|91071653|gb|ABE06534.1| cold shock-like protein H [Escherichia coli UTI89]
 gi|110342762|gb|ABG68999.1| cold shock-like protein CspH [Escherichia coli 536]
 gi|110614550|gb|ABF03217.1| cold shock-like protein [Shigella flexneri 5 str. 8401]
 gi|157066187|gb|ABV05442.1| cold shock DNA-binding protein [Escherichia coli HS]
 gi|157080544|gb|ABV20252.1| cold shock DNA-binding protein [Escherichia coli E24377A]
 gi|169755540|gb|ACA78239.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|169888482|gb|ACB02189.1| stress protein, member of the CspA-family [Escherichia coli str.
          K-12 substr. DH10B]
 gi|170521759|gb|ACB19937.1| cold-shock DNA-binding domain protein CspH [Escherichia coli
          SMS-3-5]
 gi|187427702|gb|ACD06976.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94]
 gi|187770359|gb|EDU34203.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|188017978|gb|EDU56100.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|188489965|gb|EDU65068.1| cold shock DNA-binding protein [Escherichia coli 53638]
 gi|189001378|gb|EDU70364.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189358141|gb|EDU76560.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189363304|gb|EDU81723.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189366626|gb|EDU85042.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|189372729|gb|EDU91145.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC869]
 gi|189377097|gb|EDU95513.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC508]
 gi|190903416|gb|EDV63136.1| cold shock DNA-binding protein [Escherichia coli B7A]
 gi|190907294|gb|EDV66892.1| cold-shock DNA-binding domain protein CspH [Escherichia coli F11]
 gi|192926026|gb|EDV80670.1| cold shock DNA-binding protein [Escherichia coli E22]
 gi|192955896|gb|EDV86365.1| cold shock DNA-binding protein [Escherichia coli E110019]
 gi|194412128|gb|EDX28437.1| cold shock DNA-binding protein [Escherichia coli B171]
 gi|194423021|gb|EDX39015.1| cold shock DNA-binding protein [Escherichia coli 101-1]
 gi|208727271|gb|EDZ76872.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208732283|gb|EDZ80971.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208737756|gb|EDZ85439.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209162188|gb|ACI39621.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          EC4115]
 gi|209774138|gb|ACI85381.1| cold shock-like protein [Escherichia coli]
 gi|209774140|gb|ACI85382.1| cold shock-like protein [Escherichia coli]
 gi|209774142|gb|ACI85383.1| cold shock-like protein [Escherichia coli]
 gi|209774144|gb|ACI85384.1| cold shock-like protein [Escherichia coli]
 gi|209774146|gb|ACI85385.1| cold shock-like protein [Escherichia coli]
 gi|209911500|dbj|BAG76574.1| cold shock-like protein [Escherichia coli SE11]
 gi|215264177|emb|CAS08521.1| stress protein, member of the CspA-family [Escherichia coli
          O127:H6 str. E2348/69]
 gi|217321122|gb|EEC29546.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str.
          TW14588]
 gi|218351254|emb|CAU96958.1| stress protein, member of the CspA-family [Escherichia coli
          55989]
 gi|218360343|emb|CAQ97893.1| stress protein, member of the CspA-family [Escherichia coli IAI1]
 gi|218364648|emb|CAR02334.1| stress protein, member of the CspA-family [Escherichia coli S88]
 gi|218370485|emb|CAR18292.1| stress protein, member of the CspA-family [Escherichia coli
          IAI39]
 gi|218431502|emb|CAR12380.1| stress protein, member of the CspA-family [Escherichia coli
          UMN026]
 gi|222032704|emb|CAP75443.1| Cold shock-like protein cspH [Escherichia coli LF82]
 gi|226898243|gb|EEH84502.1| cold shock DNA-binding protein [Escherichia sp. 3_2_53FAA]
 gi|227838811|gb|EEJ49277.1| cold shock family protein [Escherichia coli 83972]
 gi|238863579|gb|ACR65577.1| stress protein, member of the CspA-family [Escherichia coli
          BW2952]
 gi|242376802|emb|CAQ31515.1| stress protein, member of the CspA family [Escherichia coli
          BL21(DE3)]
 gi|253325026|gb|ACT29628.1| cold-shock DNA-binding domain protein [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253973002|gb|ACT38673.1| stress protein, member of the CspA-family [Escherichia coli B
          str. REL606]
 gi|253977216|gb|ACT42886.1| stress protein, member of the CspA-family [Escherichia coli
          BL21(DE3)]
 gi|254591645|gb|ACT71006.1| stress protein, member of the CspA-family [Escherichia coli
          O157:H7 str. TW14359]
 gi|257753341|dbj|BAI24843.1| stress protein CspH [Escherichia coli O26:H11 str. 11368]
 gi|257758383|dbj|BAI29880.1| stress protein CspH [Escherichia coli O103:H2 str. 12009]
 gi|257763553|dbj|BAI35048.1| stress protein CspH [Escherichia coli O111:H- str. 11128]
 gi|260449866|gb|ACX40288.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|281178105|dbj|BAI54435.1| cold shock-like protein [Escherichia coli SE15]
 gi|281600352|gb|ADA73336.1| Cold shock-like protein cspH [Shigella flexneri 2002017]
 gi|290761860|gb|ADD55821.1| Cold shock-like protein cspH [Escherichia coli O55:H7 str.
          CB9615]
 gi|291324102|gb|EFE63524.1| cold shock-like protein cspH [Escherichia coli B088]
 gi|291434322|gb|EFF07295.1| cold shock protein [Escherichia coli B185]
 gi|291469834|gb|EFF12318.1| predicted protein [Escherichia coli B354]
 gi|294493039|gb|ADE91795.1| cold shock DNA-binding protein [Escherichia coli IHE3034]
 gi|299881187|gb|EFI89398.1| cold-shock DNA-binding domain protein [Escherichia coli MS 196-1]
 gi|300300366|gb|EFJ56751.1| cold-shock DNA-binding domain protein [Escherichia coli MS 185-1]
 gi|300307059|gb|EFJ61579.1| cold-shock DNA-binding domain protein [Escherichia coli MS 200-1]
 gi|300315436|gb|EFJ65220.1| cold-shock DNA-binding domain protein [Escherichia coli MS 175-1]
 gi|300359772|gb|EFJ75642.1| cold-shock DNA-binding domain protein [Escherichia coli MS 198-1]
 gi|300397231|gb|EFJ80769.1| cold-shock DNA-binding domain protein [Escherichia coli MS 69-1]
 gi|300405112|gb|EFJ88650.1| cold-shock DNA-binding domain protein [Escherichia coli MS 84-1]
 gi|300409717|gb|EFJ93255.1| cold-shock DNA-binding domain protein [Escherichia coli MS 45-1]
 gi|300412087|gb|EFJ95397.1| cold-shock DNA-binding domain protein [Escherichia coli MS 115-1]
 gi|300418548|gb|EFK01859.1| cold-shock DNA-binding domain protein [Escherichia coli MS 182-1]
 gi|300450966|gb|EFK14586.1| cold-shock DNA-binding domain protein [Escherichia coli MS 116-1]
 gi|300457312|gb|EFK20805.1| cold-shock DNA-binding domain protein [Escherichia coli MS 21-1]
 gi|300462808|gb|EFK26301.1| cold-shock DNA-binding domain protein [Escherichia coli MS 187-1]
 gi|300523584|gb|EFK44653.1| cold-shock DNA-binding domain protein [Escherichia coli MS 119-7]
 gi|300528028|gb|EFK49090.1| cold-shock DNA-binding domain protein [Escherichia coli MS 107-1]
 gi|300842233|gb|EFK69993.1| cold-shock DNA-binding domain protein [Escherichia coli MS 124-1]
 gi|300846211|gb|EFK73971.1| cold-shock DNA-binding domain protein [Escherichia coli MS 78-1]
 gi|301075412|gb|EFK90218.1| cold-shock DNA-binding domain protein [Escherichia coli MS 146-1]
 gi|305853335|gb|EFM53774.1| Cold shock-like protein cspH [Escherichia coli NC101]
 gi|307552813|gb|ADN45588.1| cold shock-like protein H [Escherichia coli ABU 83972]
 gi|307627599|gb|ADN71903.1| Cold shock-like protein cspH [Escherichia coli UM146]
 gi|308121326|gb|EFO58588.1| cold-shock DNA-binding domain protein [Escherichia coli MS 145-7]
 gi|309701266|emb|CBJ00566.1| stress protein, member of the CspA-family [Escherichia coli ETEC
          H10407]
 gi|312286355|gb|EFR14268.1| cold shock-like protein cspG [Escherichia coli 2362-75]
 gi|312945494|gb|ADR26321.1| stress protein CspH [Escherichia coli O83:H1 str. NRG 857C]
 gi|313650760|gb|EFS15161.1| cold shock-like protein cspG [Shigella flexneri 2a str. 2457T]
 gi|315060273|gb|ADT74600.1| stress protein, member of the CspA-family [Escherichia coli W]
 gi|315135639|dbj|BAJ42798.1| cold shock-like protein cspH [Escherichia coli DH1]
 gi|315258036|gb|EFU38004.1| cold-shock DNA-binding domain protein [Escherichia coli MS 85-1]
 gi|315287612|gb|EFU47018.1| cold-shock DNA-binding domain protein [Escherichia coli MS 110-3]
 gi|315291157|gb|EFU50520.1| cold-shock DNA-binding domain protein [Escherichia coli MS 153-1]
 gi|315296283|gb|EFU55589.1| cold-shock DNA-binding domain protein [Escherichia coli MS 16-3]
 gi|320175184|gb|EFW50294.1| Cold shock protein CspH [Shigella dysenteriae CDC 74-1112]
 gi|320178569|gb|EFW53534.1| Cold shock protein CspH [Shigella boydii ATCC 9905]
 gi|320187199|gb|EFW61900.1| Cold shock protein CspH [Shigella flexneri CDC 796-83]
 gi|320192514|gb|EFW67156.1| Cold shock protein CspH [Escherichia coli O157:H7 str. EC1212]
 gi|320196523|gb|EFW71146.1| Cold shock protein CspH [Escherichia coli WV_060327]
 gi|320200217|gb|EFW74805.1| Cold shock protein CspH [Escherichia coli EC4100B]
 gi|320637856|gb|EFX07648.1| cold shock-like protein CspH [Escherichia coli O157:H7 str.
          G5101]
 gi|320642981|gb|EFX12182.1| cold shock-like protein CspH [Escherichia coli O157:H- str.
          493-89]
 gi|320648438|gb|EFX17093.1| cold shock-like protein CspH [Escherichia coli O157:H- str. H
          2687]
 gi|320653755|gb|EFX21829.1| cold shock-like protein CspH [Escherichia coli O55:H7 str.
          3256-97 TW 07815]
 gi|320659597|gb|EFX27160.1| cold shock-like protein CspH [Escherichia coli O55:H7 str. USDA
          5905]
 gi|320664368|gb|EFX31519.1| cold shock-like protein CspH [Escherichia coli O157:H7 str.
          LSU-61]
 gi|323157488|gb|EFZ43598.1| cold shock-like protein cspG [Escherichia coli EPECa14]
 gi|323174904|gb|EFZ60519.1| cold shock-like protein cspG [Escherichia coli LT-68]
 gi|323379167|gb|ADX51435.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323938093|gb|EGB34355.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1520]
 gi|323942903|gb|EGB39068.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323947222|gb|EGB43230.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323953316|gb|EGB49182.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H252]
 gi|323958281|gb|EGB53990.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H263]
 gi|323962874|gb|EGB58449.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H489]
 gi|323967236|gb|EGB62660.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli M863]
 gi|323973136|gb|EGB68328.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|324009921|gb|EGB79140.1| cold-shock DNA-binding domain protein [Escherichia coli MS 57-2]
 gi|324013377|gb|EGB82596.1| cold-shock DNA-binding domain protein [Escherichia coli MS 60-1]
 gi|324019121|gb|EGB88340.1| cold-shock DNA-binding domain protein [Escherichia coli MS 117-3]
 gi|324117148|gb|EGC11056.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E1167]
 gi|326338569|gb|EGD62396.1| Cold shock protein CspH [Escherichia coli O157:H7 str. 1125]
 gi|326347790|gb|EGD71506.1| Cold shock protein CspH [Escherichia coli O157:H7 str. 1044]
 gi|327253386|gb|EGE65024.1| cold shock-like protein cspG [Escherichia coli STEC_7v]
 gi|330910755|gb|EGH39265.1| cold shock protein CspH [Escherichia coli AA86]
 gi|331038318|gb|EGI10538.1| major cold shock protein Cspa1 [Escherichia coli H736]
 gi|331044995|gb|EGI17122.1| conserved domain protein [Escherichia coli M605]
 gi|331055297|gb|EGI27306.1| conserved domain protein [Escherichia coli TA206]
 gi|331060818|gb|EGI32782.1| major cold shock protein Cspa1 [Escherichia coli TA143]
 gi|331064965|gb|EGI36860.1| major cold shock protein Cspa1 [Escherichia coli TA271]
 gi|331070166|gb|EGI41532.1| major cold shock protein Cspa1 [Escherichia coli TA280]
 gi|331075468|gb|EGI46766.1| conserved domain protein [Escherichia coli H591]
 gi|331080125|gb|EGI51304.1| major cold shock protein Cspa1 [Escherichia coli H299]
 gi|332092463|gb|EGI97536.1| cold shock-like protein cspG [Shigella boydii 5216-82]
 gi|332093477|gb|EGI98535.1| cold shock-like protein cspG [Shigella boydii 3594-74]
 gi|332102181|gb|EGJ05527.1| predicted protein [Shigella sp. D9]
 gi|332342431|gb|AEE55765.1| cold shock-like protein CspG [Escherichia coli UMNK88]
 gi|332759842|gb|EGJ90143.1| cold shock-like protein cspG [Shigella flexneri 2747-71]
 gi|332762774|gb|EGJ93037.1| cold shock-like protein cspG [Shigella flexneri K-671]
 gi|333019957|gb|EGK39228.1| cold shock-like protein cspG [Shigella flexneri K-304]
          Length = 70

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G GFI P    +   +V +H SA        L  G  V +  V N   G
Sbjct: 6  TGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRDAEVLIPGLRVEFCRV-NGLRG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PTAANV 67


>gi|332704849|ref|ZP_08424937.1| Cold-shock protein, DNA-binding [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554998|gb|EGJ52042.1| Cold-shock protein, DNA-binding [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 205

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     T  G D++ HR+++ +A    L  G  V Y+  + D      A  ++++  
Sbjct: 132 YGFI----RTVDGQDIYFHRNSLLNANFDTLELGTGVAYEATEGDEG--LQASTVRVIEH 185

Query: 76  SSN 78
            ++
Sbjct: 186 KTS 188


>gi|281345132|gb|EFB20716.1| hypothetical protein PANDA_000327 [Ailuropoda melanoleuca]
          Length = 168

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 57  FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 107


>gi|50084245|ref|YP_045755.1| putative cold shock protein [Acinetobacter sp. ADP1]
 gi|49530221|emb|CAG67933.1| putative cold shock protein [Acinetobacter sp. ADP1]
          Length = 97

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 18/80 (22%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-----QLVTYDYV 57
          ++G IK Y+  KG+GFI   G  E   DVF H S         L EG     + V +  V
Sbjct: 6  YQGKIKQYDATKGFGFI---GGLE--QDVFFHISDFP------LEEGEPKRNERVKFMVV 54

Query: 58 QNDANGKYSAENLKLVPKSS 77
          +N  NGK+ A  ++ V   S
Sbjct: 55 EN--NGKFKAVKIQRVVDQS 72


>gi|332884046|gb|EGK04326.1| hypothetical protein HMPREF9456_01354 [Dysgonomonas mossii DSM
           22836]
          Length = 151

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 13/62 (20%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL---TEGQLVTYDYVQND 60
            G ++++N DKGYGFI   GSTE     F H S+        L    EG +VT++  +  
Sbjct: 85  NGRVEYFNQDKGYGFIKHTGSTEK---YFFHVSS-------TLVPIEEGNMVTFELERGQ 134

Query: 61  AN 62
             
Sbjct: 135 KG 136


>gi|169797044|ref|YP_001714837.1| putative cold shock protein [Acinetobacter baumannii AYE]
 gi|213156550|ref|YP_002318211.1| putative cold shock protein [Acinetobacter baumannii AB0057]
 gi|215484505|ref|YP_002326740.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB307-0294]
 gi|301347614|ref|ZP_07228355.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB056]
 gi|301512491|ref|ZP_07237728.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB058]
 gi|301595899|ref|ZP_07240907.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB059]
 gi|332852133|ref|ZP_08433960.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          6013150]
 gi|332867532|ref|ZP_08437685.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          6013113]
 gi|169149971|emb|CAM87865.1| putative cold shock protein [Acinetobacter baumannii AYE]
 gi|213055710|gb|ACJ40612.1| putative cold shock protein [Acinetobacter baumannii AB0057]
 gi|213986360|gb|ACJ56659.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB307-0294]
 gi|332729505|gb|EGJ60844.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          6013150]
 gi|332733949|gb|EGJ65094.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii
          6013113]
          Length = 97

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
          + G +K YN DKG+GFI+         D+F H S   AS G       + V +  +  D 
Sbjct: 6  YTGRVKQYNADKGFGFISTTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56

Query: 62 NGKYSAENLKLVPK 75
           GK+ A  ++ +  
Sbjct: 57 RGKFKAIKIERIDP 70


>gi|157960755|ref|YP_001500789.1| cold-shock DNA-binding domain-containing protein [Shewanella
          pealeana ATCC 700345]
 gi|157845755|gb|ABV86254.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC
          700345]
          Length = 205

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 2  VHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          V  G I  +N DKG+GFI  PE   +    VFLH SA AS        G+ V +   + D
Sbjct: 6  VSTGVIDSWNDDKGFGFIQIPEQKQQ----VFLHISAFASQSPR-PQSGKQVQFTLAK-D 59

Query: 61 ANGKYSAENLKLVPKSS 77
            GK+ AE  +L+   S
Sbjct: 60 KQGKWRAEKAQLLSGGS 76


>gi|293404282|ref|ZP_06648276.1| cold shock-like protein cspH [Escherichia coli FVEC1412]
 gi|298380065|ref|ZP_06989670.1| cold shock-like protein cspH [Escherichia coli FVEC1302]
 gi|312971119|ref|ZP_07785298.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|291428868|gb|EFF01893.1| cold shock-like protein cspH [Escherichia coli FVEC1412]
 gi|298279763|gb|EFI21271.1| cold shock-like protein cspH [Escherichia coli FVEC1302]
 gi|310336880|gb|EFQ02047.1| cold shock-like protein cspG [Escherichia coli 1827-70]
 gi|323158183|gb|EFZ44277.1| cold shock-like protein cspG [Escherichia coli E128010]
 gi|323175878|gb|EFZ61472.1| cold shock-like protein cspG [Escherichia coli 1180]
 gi|323190645|gb|EFZ75915.1| cold shock-like protein cspG [Escherichia coli RN587/1]
 gi|332767783|gb|EGJ97974.1| cold shock protein CspG [Shigella flexneri 2930-71]
          Length = 66

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G GFI P    +   +V +H SA        L  G  V +  V N   G
Sbjct: 2  TGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRDAEVLIPGLRVEFCRV-NGLRG 57

Query: 64 KYSAEN 69
            +A  
Sbjct: 58 PTAANV 63


>gi|152964323|ref|YP_001360107.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans
          SRS30216]
 gi|151358840|gb|ABS01843.1| putative cold-shock DNA-binding domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 156

 Score = 44.6 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G ++ ++  +G+GFIT     E+   VF H   V      +L EG  V +   Q D 
Sbjct: 4  LAKGKVRSFDDGRGFGFITSPDCPEN---VFFHVKDVVDLEAEDL-EGASVQFTLDQGDR 59

Query: 62 NGKYSAENLKLV 73
             Y A +++ +
Sbjct: 60 G--YKATDVRPL 69


>gi|224367842|ref|YP_002602005.1| CspG [Desulfobacterium autotrophicum HRM2]
 gi|223690558|gb|ACN13841.1| CspG [Desulfobacterium autotrophicum HRM2]
          Length = 217

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+ RG+I  +N +KG+GFITP      G  +F H  + +          Q +TY     D
Sbjct: 1  MLRRGNITLWNDEKGFGFITP---NAGGKQLFFHIKSCSPHNRRPAI-NQSITYSLSV-D 55

Query: 61 ANGKYSAENLKLVPK 75
            G+  A  + ++P 
Sbjct: 56 KQGRPCAVKV-ILPD 69


>gi|218246175|ref|YP_002371546.1| cold-shock DNA-binding domain-containing protein [Cyanothece sp.
          PCC 8801]
 gi|218166653|gb|ACK65390.1| cold-shock DNA-binding domain protein [Cyanothece sp. PCC 8801]
          Length = 209

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          KW   ++G+GFI P    +   +VFLH S V  A      E   + Y  V  D++GK  A
Sbjct: 12 KW-KDERGFGFIQP---IDGSQEVFLHISEVKDASRR-PQENDTIYYHCVV-DSDGKVRA 65

Query: 68 EN 69
           N
Sbjct: 66 CN 67


>gi|260825712|ref|XP_002607810.1| hypothetical protein BRAFLDRAFT_259732 [Branchiostoma floridae]
 gi|229293159|gb|EEN63820.1| hypothetical protein BRAFLDRAFT_259732 [Branchiostoma floridae]
          Length = 687

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 4   RGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           RGS+   +  KG +GFI  E        +F H S V   G  +L+ G  V +  V N  +
Sbjct: 550 RGSV---DTIKGQFGFINYEVGDN--KKLFFHLSEVH-DG-SDLSPGDKVEFVVVCNQKS 602

Query: 63  GKYSAENLKLV 73
           GKYSA ++K V
Sbjct: 603 GKYSACSVKKV 613


>gi|257059224|ref|YP_003137112.1| cold-shock DNA-binding domain protein [Cyanothece sp. PCC 8802]
 gi|256589390|gb|ACV00277.1| cold-shock DNA-binding domain protein [Cyanothece sp. PCC 8802]
          Length = 211

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 8  KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
          KW   ++G+GFI P    +   +VFLH S V  A      E   + Y  V  D++GK  A
Sbjct: 12 KW-KDERGFGFIQP---IDGSQEVFLHISEVKDASRR-PQENDTIYYHCVV-DSDGKVRA 65

Query: 68 EN 69
           N
Sbjct: 66 CN 67


>gi|160888974|ref|ZP_02069977.1| hypothetical protein BACUNI_01394 [Bacteroides uniformis ATCC 8492]
 gi|270293902|ref|ZP_06200104.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479261|ref|ZP_07938396.1| cold-shock DNA-binding domain-containing protein [Bacteroides sp.
           4_1_36]
 gi|156861441|gb|EDO54872.1| hypothetical protein BACUNI_01394 [Bacteroides uniformis ATCC 8492]
 gi|270275369|gb|EFA21229.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316904549|gb|EFV26368.1| cold-shock DNA-binding domain-containing protein [Bacteroides sp.
           4_1_36]
          Length = 165

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + RG I+++N  KG+GFI      E     F H + V +     + E  +VT+D  +   
Sbjct: 85  IRRGRIEFFNESKGFGFIKDLSGVEK---YFFHINNVLTD----IAENNIVTFDLERGLK 137

Query: 62  NGKYSAENLKL 72
               +A N+ L
Sbjct: 138 G--MNAVNVAL 146


>gi|221115367|ref|XP_002163744.1| PREDICTED: similar to RNA-binding protein pippin [Hydra
           magnipapillata]
          Length = 147

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++  +  +KG+GF+ P+    +   VFLH S +     + +  G  V +  +      
Sbjct: 65  NGTVVSFCREKGHGFVKPDNEERN---VFLHISDIEDE--YVVQSGDRVEFRTIPMPPKC 119

Query: 64  -KYSAENLKLVP 74
            +  A  ++L+ 
Sbjct: 120 VERMAVEVRLIE 131


>gi|145477311|ref|XP_001424678.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391744|emb|CAK57280.1| unnamed protein product [Paramecium tetraurelia]
          Length = 328

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 12/78 (15%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQN 59
           G++K+Y+  + YGFI  +   + G D+F+H   +  AG     L    +G ++ + ++  
Sbjct: 247 GTLKFYDEARSYGFIIMD---QDGSDLFVHCDDLTKAGMTKDFLRTAKQGNIIRFSFLIL 303

Query: 60  DANGK----YSAENLKLV 73
           +  GK      A +L+ +
Sbjct: 304 EYFGKYNKSRKAVDLQFI 321


>gi|47224663|emb|CAG03647.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 206

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 5  GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRS 36
          G  KW+N   G+GFI+    EGS      DVF+H+S
Sbjct: 9  GFCKWFNVRMGFGFISMTHSEGSPVDPPLDVFVHQS 44



 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 36  SAVASAGLFNLTEGQLVTYDYVQNDAN 62
           S +   G  +L EG+ V + + ++   
Sbjct: 103 SKLVMEGFRSLKEGEQVEFTFKKSTKG 129


>gi|163788507|ref|ZP_02182953.1| cold shock protein [Flavobacteriales bacterium ALC-1]
 gi|159876827|gb|EDP70885.1| cold shock protein [Flavobacteriales bacterium ALC-1]
          Length = 151

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G + +Y+  KG+GFI    + E     F H S +    +  + E   VT++  +   
Sbjct: 89  IRNGKVSFYDSSKGFGFIIDTETNEKH---FTHVSGI----IDEIMENDKVTFELEKGQR 141

Query: 62  NGKYSAENLK 71
               +A  +K
Sbjct: 142 G--MNAVKVK 149


>gi|153870420|ref|ZP_01999827.1| Cold-shock protein, DNA-binding [Beggiatoa sp. PS]
 gi|152073121|gb|EDN70180.1| Cold-shock protein, DNA-binding [Beggiatoa sp. PS]
          Length = 194

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDANGKYSAENL 70
           +KG+GFI PE     G+DVF+H  A          EG ++ Y     +   GKY A N 
Sbjct: 21 DEKGFGFILPENC---GEDVFIHIRAFGKISRR-PKEGDIIYYHLKTTSSNKGKYRAYNA 76

Query: 71 KL 72
           +
Sbjct: 77 TI 78


>gi|299531202|ref|ZP_07044613.1| cold-shock DNA-binding domain protein [Comamonas testosteroni
          S44]
 gi|298720785|gb|EFI61731.1| cold-shock DNA-binding domain protein [Comamonas testosteroni
          S44]
          Length = 224

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 11/69 (15%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-----GQLVTYD 55
          M + G++  +N ++G+G+I  +G    G+ +F+H SA          E     G  + + 
Sbjct: 1  MRYSGTLTQWNDERGFGWIEADG---GGERLFVHISAFEP---RPPAEQRPRPGLRLEFS 54

Query: 56 YVQNDANGK 64
                  +
Sbjct: 55 VGMEQGRKR 63


>gi|264676475|ref|YP_003276381.1| cold-shock DNA-binding domain protein [Comamonas testosteroni
          CNB-2]
 gi|262206987|gb|ACY31085.1| cold-shock DNA-binding domain protein [Comamonas testosteroni
          CNB-2]
          Length = 224

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 11/69 (15%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-----GQLVTYD 55
          M + G++  +N ++G+G+I  +G    G+ +F+H SA          E     G  + + 
Sbjct: 1  MRYSGTLTQWNDERGFGWIEADG---GGERLFVHISAFEP---RPPAEQRPQPGLRLEFS 54

Query: 56 YVQNDANGK 64
                  +
Sbjct: 55 VGMEQGRKR 63


>gi|149370357|ref|ZP_01890046.1| cold shock protein [unidentified eubacterium SCB49]
 gi|149355908|gb|EDM44465.1| cold shock protein [unidentified eubacterium SCB49]
          Length = 153

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 15/71 (21%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDD---VFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           G++ +Y+  KG+GFI        G D    F H S +    +  +TEG LV+++  +   
Sbjct: 93  GTVDFYDSSKGFGFII------DGKDKQKYFCHVSGL----IDEITEGNLVSFELEKGQR 142

Query: 62  NGKYSAENLKL 72
               +A  +KL
Sbjct: 143 G--MNAVKVKL 151


>gi|313225295|emb|CBY06769.1| unnamed protein product [Oikopleura dioica]
          Length = 834

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 14/90 (15%)

Query: 3   HRGSIKWYNPD-------------KG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTE 48
             G+++ YN               KG YGFI  +       +VF H + +    + +L  
Sbjct: 649 KTGTVRAYNVQLKRKQQQSTIESIKGEYGFINYQEGEGDSKNVFFHATNLIEVSIADLGV 708

Query: 49  GQLVTYDYVQNDANGKYSAENLKLVPKSSN 78
           G +V +  + N  +G   A  ++LV K++ 
Sbjct: 709 GDIVKFSVIHNKRSGNTCAAGIRLVKKAAK 738



 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 5   GSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDAN 62
           G++ K  N    YGFI  +     G  +F H S VA+ G    L     V ++ + ++ N
Sbjct: 55  GTVEKMMNS---YGFI--DVLDSRGR-IFFHFSQVANGGNNEQLRVADEVEFEMIMDERN 108

Query: 63  GKYSAENLKLVPKSS 77
           G+  A  +  +P+ +
Sbjct: 109 GRIVASKVVRLPRGT 123



 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      E   ++F H S VA+  + +L  G  V +     +   K  A N+ L+P 
Sbjct: 221 FGFIKR---AEVAVEIFFHYSQVAAD-VPDLRVGNDVEFSI--ENRKDKEVAINVSLLPD 274

Query: 76  SS 77
            S
Sbjct: 275 GS 276


>gi|154494222|ref|ZP_02033542.1| hypothetical protein PARMER_03572 [Parabacteroides merdae ATCC
           43184]
 gi|154086084|gb|EDN85129.1| hypothetical protein PARMER_03572 [Parabacteroides merdae ATCC
           43184]
          Length = 152

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G + ++N  KGYGFI   GS   G+  F H S   +  L +++E  +VT++  +     
Sbjct: 88  KGRVDYFNESKGYGFIKDLGS---GEKYFFHVS---NNTLTDISETDIVTFELERGLRG- 140

Query: 64  KYSAENLKL 72
             +A N+++
Sbjct: 141 -MNAINIRI 148


>gi|330467321|ref|YP_004405064.1| hypothetical protein VAB18032_16800 [Verrucosispora maris
          AB-18-032]
 gi|328810292|gb|AEB44464.1| hypothetical protein VAB18032_16800 [Verrucosispora maris
          AB-18-032]
          Length = 115

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          G ++ Y+ D+G+G I  +G+   G   ++H SA+A  G   L  GQ V++       +G
Sbjct: 15 GVVRIYHGDEGWGVI--DGAEVPGG-CWVHFSAIAMNGYRQLAAGQGVSFIAEPMAQDG 70


>gi|167625421|ref|YP_001675715.1| cold-shock DNA-binding domain-containing protein [Shewanella
          halifaxensis HAW-EB4]
 gi|167355443|gb|ABZ78056.1| putative cold-shock DNA-binding domain protein [Shewanella
          halifaxensis HAW-EB4]
          Length = 258

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGD------DVFLHRSAVASAGLFNLTEGQLVT 53
          M+H+G  ++W N  KG+GFI  E + +         +VF+H SA+       L  G  + 
Sbjct: 1  MIHKGQLVRW-NDAKGFGFIRIEQAHDINQPANANHEVFIHVSALGLIPRRPLV-GDTLF 58

Query: 54 YDYVQNDANGKYSAENLKL 72
          +  +    +GK  A   ++
Sbjct: 59 FQIL-TQKDGKQRAVEARI 76


>gi|224587820|gb|ACN58720.1| Cold shock domain-containing protein E1 [Salmo salar]
          Length = 196

 Score = 44.2 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFIT E        +F H   V   GL  L  G  V +  + N   GK SA N++ V +
Sbjct: 83  FGFITYEVG--ESKKLFFHVKEVH-DGLE-LQTGDEVEFSVILNQRTGKCSACNVRRVSE 138


>gi|331652013|ref|ZP_08353032.1| conserved domain protein [Escherichia coli M718]
 gi|331050291|gb|EGI22349.1| conserved domain protein [Escherichia coli M718]
          Length = 70

 Score = 44.2 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G GFI P    +   +V +H SA        L  G  V +  V N   G
Sbjct: 6  TGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRYAEVLIPGLRVEFCRV-NGLRG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PTAANV 67


>gi|329956783|ref|ZP_08297352.1| cold-shock DNA-binding domain protein [Bacteroides clarus YIT
           12056]
 gi|328523822|gb|EGF50909.1| cold-shock DNA-binding domain protein [Bacteroides clarus YIT
           12056]
          Length = 146

 Score = 44.2 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 9/69 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG ++++N  +G+GFI      E     F H + V +     + EG +VT+D  +     
Sbjct: 85  RGRVEFFNEARGFGFIKDLAGIEK---YFFHVNNVVTE----VKEGNIVTFDLERGAKG- 136

Query: 64  KYSAENLKL 72
             +A N+ L
Sbjct: 137 -MNAVNINL 144


>gi|325267434|ref|ZP_08134090.1| hypothetical protein HMPREF9098_1818 [Kingella denitrificans ATCC
           33394]
 gi|324981075|gb|EGC16731.1| hypothetical protein HMPREF9098_1818 [Kingella denitrificans ATCC
           33394]
          Length = 1351

 Score = 43.8 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62
           +G IK  N +K +GF+T E    SG D+F H++ ++S   L +L+ G  V++  + ++  
Sbjct: 303 KGKIKTINYEKKFGFVTQE----SGVDLFFHQNNLSSKLKLDSLSTGDEVSF-VIGSNRQ 357

Query: 63  GKYSAENLKL 72
           G   A+++ L
Sbjct: 358 G-ECADDITL 366


>gi|291514453|emb|CBK63663.1| cold-shock DNA-binding protein family [Alistipes shahii WAL 8301]
          Length = 148

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           G ++++   KGYGFI     +E     F H +  A AG+    EG  VT++  +    
Sbjct: 87  GRVEYFTASKGYGFIKDAAGSEK---YFFHITN-APAGI---AEGDRVTFELERGTRG 137


>gi|197104106|ref|YP_002129483.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
           HLK1]
 gi|196477526|gb|ACG77054.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum
           HLK1]
          Length = 189

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
           D+GYGF+     ++ G +++ HR+A+ + G  +L  G  V +   +        A  + L
Sbjct: 129 DEGYGFLE----SDDGREIYFHRNALVNGGFEHLAVGDRVRFAESEGVKG--PQASTVHL 182

Query: 73  VPKSSN 78
           V  ++ 
Sbjct: 183 VKGAAQ 188


>gi|170727762|ref|YP_001761788.1| cold-shock DNA-binding domain-containing protein [Shewanella
          woodyi ATCC 51908]
 gi|169813109|gb|ACA87693.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC
          51908]
          Length = 276

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 4  RGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          +G+ ++W   DKG+GFI  E   +   DVF+H S ++        EG ++ +   +  ++
Sbjct: 7  KGTLVRW-KDDKGFGFIQAEPELD--RDVFIHASTLSHMSRR-PKEGDIIYFQL-ERKSD 61

Query: 63 GKYSAE 68
          GK++A 
Sbjct: 62 GKFNAV 67


>gi|331701069|ref|YP_004398028.1| Cold-shock protein DNA-binding protein [Lactobacillus buchneri
          NRRL B-30929]
 gi|329128412|gb|AEB72965.1| Cold-shock protein DNA-binding protein [Lactobacillus buchneri
          NRRL B-30929]
          Length = 69

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          + +G IK YNP   +GFIT +   +   D+F  ++A        +  G+ V Y  V    
Sbjct: 1  MLKGKIKSYNPQNAFGFITQDSGED---DLFFFKNAFPEDQYGTIQVGKPVEY-VVVAGQ 56

Query: 62 NGKYSA 67
           G  +A
Sbjct: 57 KGPQAA 62


>gi|114798604|ref|YP_760614.1| cold shock DNA-binding membrane protein [Hyphomonas neptunium
          ATCC 15444]
 gi|114738778|gb|ABI76903.1| cold shock DNA-binding membrane protein [Hyphomonas neptunium
          ATCC 15444]
          Length = 214

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +N  +G+GF+    + + G D F H  A A     ++ EG L +Y   + D  G+  A +
Sbjct: 24 WNEARGFGFL---KAVDGGPDAFAHIRAFAKE-ERHIEEGHLYSYQ-TETDEAGRLRAAD 78

Query: 70 LKLV 73
          ++ +
Sbjct: 79 IRPI 82


>gi|167752758|ref|ZP_02424885.1| hypothetical protein ALIPUT_01019 [Alistipes putredinis DSM 17216]
 gi|167659827|gb|EDS03957.1| hypothetical protein ALIPUT_01019 [Alistipes putredinis DSM 17216]
          Length = 146

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 7/59 (11%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           +G ++++N +KGYGFI    STE     F H S+ A  G+    EG++V ++ ++    
Sbjct: 85  KGRVEYFNTEKGYGFIKDLASTEK---YFFHISS-APEGI---GEGRIVLFELMRGTRG 136


>gi|158293681|ref|XP_315026.4| AGAP004937-PA [Anopheles gambiae str. PEST]
 gi|157016564|gb|EAA10499.5| AGAP004937-PA [Anopheles gambiae str. PEST]
          Length = 959

 Score = 43.8 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV--QNDANGKYSA 67
           +  KG +GF+  +   + G  +F H S V   G  NL  G  V +  V  Q   NGK SA
Sbjct: 839 DSIKGQFGFL--DFEVDEGKKLFFHMSDVQ--GNVNLYLGDTVEFSIVTNQASRNGKTSA 894

Query: 68  ENLKLV 73
            N+  +
Sbjct: 895 CNVVKI 900



 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S   +     L  G  V +     + +GK  A N+  +P 
Sbjct: 288 FGFIER---ADVVKEIFFHFS--EADNTIELRPGDDVEFIIQTRNVSGKEVACNIARLPP 342

Query: 76  SS 77
            S
Sbjct: 343 GS 344



 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S      + +L  G  V ++   +   GK  A  +  +  
Sbjct: 123 YGFIQ---CCERQARLFFHFSQFGGN-IEHLKIGDPVEFEMTYDRRTGKPIASQVTKIAP 178

Query: 76  S 76
            
Sbjct: 179 E 179


>gi|145345223|ref|XP_001417116.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577343|gb|ABO95409.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 597

 Score = 43.8 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI          D+F H S +    +     GQ V++        GK  A  ++  PK
Sbjct: 278 YGFI---KCCSRPKDLFFHFSELNED-VDAARTGQEVSFQVTTEPRTGKVVAAGVRFAPK 333

Query: 76  SS 77
            S
Sbjct: 334 GS 335


>gi|291453430|ref|ZP_06592820.1| cold-shock DNA-binding protein family [Streptomyces albus J1074]
 gi|291356379|gb|EFE83281.1| cold-shock DNA-binding protein family [Streptomyces albus J1074]
          Length = 147

 Score = 43.8 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          +GYGFI P    E G+DVF+H + +          G+ V + + +    G   A  ++LV
Sbjct: 2  RGYGFIVP---NEGGEDVFMHANDLVDEKYL-YQSGREVEF-FEEMGEKGP-KASQIRLV 55

Query: 74 PKSS 77
           +SS
Sbjct: 56 YRSS 59


>gi|332520329|ref|ZP_08396791.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
 gi|332043682|gb|EGI79877.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4]
          Length = 150

 Score = 43.8 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           + +G + +Y+  KG+GFI     TE  +  F H S +    +  +TE   V ++  +   
Sbjct: 88  IRKGKVSFYDSSKGFGFII---DTEDQEKYFCHVSGL----IDEITENDKVQFELEKGMK 140

Query: 62  N 62
            
Sbjct: 141 G 141


>gi|146344254|ref|YP_001202110.1| cold shock domain-contain protein [Pseudomonas fluorescens SBW25]
 gi|146188066|emb|CAM96396.1| putative cold shock domain transmembrane protein [Pseudomonas
          fluorescens SBW25]
          Length = 282

 Score = 43.8 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +  +   KGYGFI+ +     G+  F+H+  V   G   LT GQ VT+        G
Sbjct: 26 EGEVISFVASKGYGFISGD----DGERYFVHQKDVK--GGEPLTSGQRVTF-VPTPSPKG 78

Query: 64 KYSAENL 70
            +   L
Sbjct: 79 SKARHVL 85


>gi|262376763|ref|ZP_06069991.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
 gi|262308473|gb|EEY89608.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii
          SH145]
          Length = 97

 Score = 43.4 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60
          +++G IK Y+P KG+GFI   G  E   DVF H S    + G       + V ++ V+N 
Sbjct: 5  LYQGKIKQYDPAKGFGFI---GCAEG--DVFFHISDFPVAEG--EPKRNERVKFNVVENG 57

Query: 61 ANGKYSAENLKLVPKSS 77
             KY A  ++ V  +S
Sbjct: 58 D--KYKAIKIERVEDNS 72


>gi|218263152|ref|ZP_03477371.1| hypothetical protein PRABACTJOHN_03052 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222937|gb|EEC95587.1| hypothetical protein PRABACTJOHN_03052 [Parabacteroides johnsonii
           DSM 18315]
          Length = 154

 Score = 43.4 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G + ++N  KGYGFI   GS   G+  F H S   +  L +++E  +VT++  +     
Sbjct: 88  KGRVDYFNESKGYGFIKDLGS---GEKYFFHVS---NNTLTDISETDIVTFELERGLRG- 140

Query: 64  KYSAENLKLVPKSSN 78
             +A N++   +S N
Sbjct: 141 -MNAINIRNESESPN 154


>gi|322802596|gb|EFZ22889.1| hypothetical protein SINV_03993 [Solenopsis invicta]
          Length = 331

 Score = 43.4 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 25 TESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           ++ +DVF+H+SA+        + ++ +G++V +D V  +  G  +A  
Sbjct: 1  NDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVIGE-KGHEAANV 48


>gi|115725199|ref|XP_788422.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 266

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           + +G+I  +   KG+GFI+ +   + G  +FLH S +     +    G  V Y
Sbjct: 53  LKKGTIAEFERSKGHGFISSD---DDGSRIFLHISDIEGE--YVPVAGDRVEY 100


>gi|73969434|ref|XP_538352.2| PREDICTED: similar to RNA-binding protein pippin [Canis familiaris]
          Length = 231

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
           +G  K ++  +G+GFITPE      +D+F+H S     
Sbjct: 148 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDPQGE 182


>gi|5817108|emb|CAB53670.1| hypothetical protein [Homo sapiens]
          Length = 171

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 58  FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 108


>gi|153836304|ref|ZP_01988971.1| cold shock domain family protein [Vibrio parahaemolyticus AQ3810]
 gi|260364958|ref|ZP_05777529.1| cold shock domain protein [Vibrio parahaemolyticus K5030]
 gi|260365000|ref|ZP_05777571.1| cold shock domain protein [Vibrio parahaemolyticus K5030]
 gi|260879605|ref|ZP_05891960.1| cold shock domain protein [Vibrio parahaemolyticus AN-5034]
 gi|260879646|ref|ZP_05892001.1| cold shock domain protein [Vibrio parahaemolyticus AN-5034]
 gi|260894920|ref|ZP_05903416.1| cold shock domain protein [Vibrio parahaemolyticus Peru-466]
 gi|260898880|ref|ZP_05907321.1| cold shock domain protein [Vibrio parahaemolyticus Peru-466]
 gi|260901090|ref|ZP_05909485.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037]
 gi|149750579|gb|EDM61324.1| cold shock domain family protein [Vibrio parahaemolyticus AQ3810]
 gi|165994449|dbj|BAF99671.1| cold shock domain family protein [Vibrio parahaemolyticus]
 gi|308086046|gb|EFO35741.1| cold shock domain protein [Vibrio parahaemolyticus Peru-466]
 gi|308086625|gb|EFO36320.1| cold shock domain protein [Vibrio parahaemolyticus Peru-466]
 gi|308093209|gb|EFO42904.1| cold shock domain protein [Vibrio parahaemolyticus AN-5034]
 gi|308093406|gb|EFO43101.1| cold shock domain protein [Vibrio parahaemolyticus AN-5034]
 gi|308110750|gb|EFO48290.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308111670|gb|EFO49210.1| cold shock domain protein [Vibrio parahaemolyticus K5030]
 gi|308111707|gb|EFO49247.1| cold shock domain protein [Vibrio parahaemolyticus K5030]
          Length = 155

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          ++W + D+G+GFI  E       D+F+H S     G      G  V +  V N    K S
Sbjct: 6  VRWVD-DRGFGFINSEELD---GDIFVHVSKFKK-GYRRPQIGDQVEFQLVNNAP--KLS 58

Query: 67 AENLKLVPKSSN 78
          A   +L+    N
Sbjct: 59 ASTAQLLGVEPN 70


>gi|322798696|gb|EFZ20294.1| hypothetical protein SINV_03090 [Solenopsis invicta]
          Length = 881

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF+  E   + G  +F H S V       L  G  V +  V N   GK SA +
Sbjct: 766 DAMKGPFGFLAYE--VDEGKKLFFHASEVQD--HVMLQPGDQVEFVLVTNQRTGKSSACS 821

Query: 70  LKLVPKSSN 78
           +  +  +  
Sbjct: 822 VTRLSDAVQ 830



 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S   S     L  G  V +  +Q   NGK  A N+  +P 
Sbjct: 281 FGFIER---ADVVKEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 334

Query: 76  SS 77
            S
Sbjct: 335 GS 336



 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 131 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKIAP 186


>gi|111223645|ref|YP_714439.1| hypothetical protein FRAAL4246 [Frankia alni ACN14a]
 gi|111151177|emb|CAJ62888.1| hypothetical protein FRAAL4246 [Frankia alni ACN14a]
          Length = 90

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          RG ++ Y+ ++G+G I            ++H S +   G  +L  G+ VT+
Sbjct: 13 RGVVRTYDAERGWGVIDAPEVPGG---CWVHYSMIEMDGYRDLVAGRQVTF 60


>gi|256846982|ref|ZP_05552428.1| cold shock domain-containing protein CspD [Lactobacillus
          coleohominis 101-4-CHN]
 gi|256715646|gb|EEU30621.1| cold shock domain-containing protein CspD [Lactobacillus
          coleohominis 101-4-CHN]
          Length = 77

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          ++  G++K Y P KG+GFI      E    +F+H   +  +    +  G  V +  V   
Sbjct: 11 LMIIGTVKSYEPTKGWGFINSPHDGE----IFMHTKGIEKSSRHLIQAGTKVGFVIVPGV 66

Query: 61 ANGKYSAENLKLV 73
              + A ++K++
Sbjct: 67 KG--FQAAHVKVI 77


>gi|28898563|ref|NP_798168.1| hypothetical protein VP1789 [Vibrio parahaemolyticus RIMD
          2210633]
 gi|28806781|dbj|BAC60052.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 164

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          ++W + D+G+GFI  E       D+F+H S     G      G  V +  V N    K S
Sbjct: 15 VRWVD-DRGFGFINSEELD---GDIFVHVSKFKK-GYRRPQIGDQVEFQLVNNAP--KLS 67

Query: 67 AENLKLVPKSSN 78
          A   +L+    N
Sbjct: 68 ASTAQLLGVEPN 79


>gi|296275546|ref|ZP_06858053.1| hypothetical protein SauraMR_04340 [Staphylococcus aureus subsp.
          aureus MR1]
 gi|296277083|ref|ZP_06859590.1| hypothetical protein SauraMR_12081 [Staphylococcus aureus subsp.
          aureus MR1]
          Length = 18

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 16/18 (88%)

Query: 2  VHRGSIKWYNPDKGYGFI 19
          ++ G++KW+N +KG+GFI
Sbjct: 1  MNNGTVKWFNAEKGFGFI 18


>gi|188026432|ref|ZP_02962051.2| hypothetical protein PROSTU_04144 [Providencia stuartii ATCC
          25827]
 gi|188019835|gb|EDU57875.1| hypothetical protein PROSTU_04144 [Providencia stuartii ATCC
          25827]
          Length = 174

 Score = 43.4 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 16 MAMNGTITTWF-EDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKNAAVTFEPTTN 68

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K++P+S
Sbjct: 69 NKG--LSAYAVKVIPES 83


>gi|137044|sp|P29174|CSDE1_CAVPO RecName: Full=Cold shock domain-containing protein E1; AltName:
          Full=Protein UNR
 gi|49568|emb|CAA42715.1| unr [Cavia porcellus]
          Length = 114

 Score = 43.4 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
          +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 1  FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 51


>gi|262369348|ref|ZP_06062676.1| LOW QUALITY PROTEIN: cold shock protein [Acinetobacter johnsonii
          SH046]
 gi|262315416|gb|EEY96455.1| LOW QUALITY PROTEIN: cold shock protein [Acinetobacter johnsonii
          SH046]
          Length = 67

 Score = 43.0 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M  +G IK ++  +G+GFI  EG  +   DVF H   +    +     G+++ +  V++ 
Sbjct: 1  MFLKGKIKSFSTPRGFGFIEVEGDID---DVFFHIKDLPQNNIE-PKIGEVLQFMIVEDQ 56

Query: 61 ANGKYSAENLKLV 73
            GK+ A N++ +
Sbjct: 57 --GKFKAGNIQRL 67


>gi|149046919|gb|EDL99667.1| rCG58531, isoform CRA_a [Rattus norvegicus]
          Length = 99

 Score = 43.0 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 4  RGSIKWYNPDKGYGF---ITPEGSTESGD-DVFLHR 35
           G  KW+N   G+GF   I+ EG+      DVF+H+
Sbjct: 54 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQ 89


>gi|313203399|ref|YP_004042056.1| cold-shock DNA-binding protein family [Paludibacter propionicigenes
           WB4]
 gi|312442715|gb|ADQ79071.1| cold-shock DNA-binding protein family [Paludibacter propionicigenes
           WB4]
          Length = 149

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHR-SAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G + +Y+  KG+GFI   G+ E     F+H  S + +     + EG LV ++  Q    
Sbjct: 88  NGRVDFYDDSKGFGFIKETGTQEK---FFVHVNSCLQA-----IKEGDLVDFELEQGKKG 139


>gi|319794317|ref|YP_004155957.1| colD-shock DNA-binding domain protein [Variovorax paradoxus EPS]
 gi|315596780|gb|ADU37846.1| cold-shock DNA-binding domain protein [Variovorax paradoxus EPS]
          Length = 223

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-GQLVTYDYVQ 58
          M  +G  ++W   D+G+GFI    S E   DVF+H+     +    L + G  ++++ + 
Sbjct: 1  MKRQGRLVRW-EADRGFGFI---RSPEISADVFVHQRDF--SDRRVLPQVGMALSFEEIH 54

Query: 59 NDANGKYSAENLKLVPKSSN 78
              G   A  ++ +  +++
Sbjct: 55 VGGKGPR-AVAVQAISANAS 73


>gi|313226675|emb|CBY21820.1| unnamed protein product [Oikopleura dioica]
          Length = 277

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLH-RSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G IK++N ++ +GFI  +G+      ++++  + V    + +L  G+ V ++ V+    G
Sbjct: 157 GKIKFFNHERDFGFIIEDGNQAE---IYMNKINIVQIGKILSLRTGERVEFN-VKRGHQG 212

Query: 64  KYSAENLK 71
           +  A  + 
Sbjct: 213 RLEAVQIT 220


>gi|288575353|ref|ZP_05976785.2| cold-shock domain protein [Neisseria mucosa ATCC 25996]
 gi|288567902|gb|EFC89462.1| cold-shock domain protein [Neisseria mucosa ATCC 25996]
          Length = 429

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE--GQLVTYDYVQNDAN 62
           G+I  ++  KGYGFI      +   ++F H SA             GQ V++   +    
Sbjct: 215 GTITTWDDAKGYGFI---RFGDESQNIFFHISAYH---YNTCRPQTGQRVSFYCNRPIEG 268

Query: 63  GKYSAENLKLVPKSS 77
            +  A  +  +   S
Sbjct: 269 NRQQAIKVVRLGDES 283


>gi|198438072|ref|XP_002131596.1| PREDICTED: similar to LOC495181 protein [Ciona intestinalis]
          Length = 163

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDD-VFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           VH+G  ++++  +G+GFI P   +   DD +F+H S +       L  G +++Y   ++ 
Sbjct: 74  VHQGVCQFFSCSQGHGFIKPTDGS--SDDLIFMHISDIEGD-YVPLY-GDILSYKLTRSP 129

Query: 61  AN-GKYSAENLKLV 73
               K+ A  +++V
Sbjct: 130 PKMEKFQAVEVRIV 143


>gi|326801235|ref|YP_004319054.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
 gi|326551999|gb|ADZ80384.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
          Length = 282

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 15/67 (22%)

Query: 2  VHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDY 56
          +  G++KW++  KG+G I  PE  +     +F+H       G  +    +  G +V  + 
Sbjct: 1  MFIGAVKWFDNQKGFGIIALPEEES-----LFVHIR-----GFSSTPLAIDSGDVVIGEK 50

Query: 57 VQNDANG 63
            +   G
Sbjct: 51 KPDKKKG 57


>gi|302846704|ref|XP_002954888.1| hypothetical protein VOLCADRAFT_95711 [Volvox carteri f.
          nagariensis]
 gi|300259863|gb|EFJ44087.1| hypothetical protein VOLCADRAFT_95711 [Volvox carteri f.
          nagariensis]
          Length = 455

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
          +GFI          DVF H S++    L   +EG  VT+  +++   GK  A  ++L P
Sbjct: 19 FGFIACPHRVH---DVFFHESSLEDCSLEQFSEGTAVTF-ILEHVNGGKPVATRVRLAP 73


>gi|255065802|ref|ZP_05317657.1| putative cold shock DNA-binding membrane protein [Neisseria sicca
           ATCC 29256]
 gi|255050120|gb|EET45584.1| putative cold shock DNA-binding membrane protein [Neisseria sicca
           ATCC 29256]
          Length = 429

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE--GQLVTYDYVQNDAN 62
           G+I  ++  KGYGFI      +   ++F H SA             GQ V++   +    
Sbjct: 215 GTITTWDDAKGYGFI---RFGDESQNIFFHISAYH---YNTCRPQTGQRVSFYCNRPIEG 268

Query: 63  GKYSAENLKLVPKSS 77
            +  A  +  +   +
Sbjct: 269 NRQQAVKVVRLGDEA 283


>gi|224369352|ref|YP_002603516.1| putative cold shock domain family protein [Desulfobacterium
          autotrophicum HRM2]
 gi|223692069|gb|ACN15352.1| putative cold shock domain family protein [Desulfobacterium
          autotrophicum HRM2]
          Length = 174

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W N ++G+GFI    S     D+F+H S +            ++ +D+V +
Sbjct: 1  MKQKGKLVRW-NENRGFGFI---KSPAIKGDLFIHISELKKMSRR-PKVNDIIYFDHVTD 55

Query: 60 DANGKYSAENLKL 72
          D  GK  A N ++
Sbjct: 56 DT-GKKKAINARI 67


>gi|291190250|ref|NP_001167093.1| Cold shock domain-containing protein E1 [Salmo salar]
 gi|223648082|gb|ACN10799.1| Cold shock domain-containing protein E1 [Salmo salar]
          Length = 854

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFIT E        +F H   V   GL  L  G  V +  + N   GK SA N++ V +
Sbjct: 741 FGFITYEVG--ESKKLFFHVKEVH-DGLE-LQTGDEVEFSVILNQRTGKCSACNVRRVSE 796



 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI     +E    +F H S      L  L  G  V ++   +   GK  A  L  +  
Sbjct: 73  YGFIQ---CSERQARLFFHCSQYNGN-LQELKIGDDVEFEVSSDRRTGKPIAVKLLKIKP 128

Query: 76  S 76
            
Sbjct: 129 E 129


>gi|160883548|ref|ZP_02064551.1| hypothetical protein BACOVA_01520 [Bacteroides ovatus ATCC 8483]
 gi|156110961|gb|EDO12706.1| hypothetical protein BACOVA_01520 [Bacteroides ovatus ATCC 8483]
          Length = 180

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG ++++N  +G+GFI      E     F H + V       + E  +VT+D  +     
Sbjct: 106 RGRVEFFNESRGFGFIKDLSGVEK---YFFHVNNVIGN----IAENNIVTFDLERGVKG- 157

Query: 64  KYSAENLKLVPKSSN 78
             +A N+ L  KS++
Sbjct: 158 -MNAINISLENKSTS 171


>gi|298385204|ref|ZP_06994763.1| cold shock protein [Bacteroides sp. 1_1_14]
 gi|298262348|gb|EFI05213.1| cold shock protein [Bacteroides sp. 1_1_14]
          Length = 112

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG ++++N  +G+GFI      +     F H + V       ++EG +VT+D  +     
Sbjct: 46  RGRVEFFNEARGFGFIKDLAGVDK---YFFHVNNVVGN----ISEGNIVTFDLERGVKG- 97

Query: 64  KYSAENL 70
             +A N+
Sbjct: 98  -MNAVNI 103


>gi|221069417|ref|ZP_03545522.1| cold-shock DNA-binding domain protein [Comamonas testosteroni
          KF-1]
 gi|220714440|gb|EED69808.1| cold-shock DNA-binding domain protein [Comamonas testosteroni
          KF-1]
          Length = 224

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 11/69 (15%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-----GQLVTYD 55
          M + G++  +N ++G+G+I  +G    G+ +F+H SA          E     G  + + 
Sbjct: 1  MRYSGTLTQWNDERGFGWIEADG---GGERLFVHISAFEP---RPPAEQRPQPGLRLEFA 54

Query: 56 YVQNDANGK 64
                  +
Sbjct: 55 VGMEQGRKR 63


>gi|62179824|ref|YP_216241.1| cold shock protein-like protein [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|224584247|ref|YP_002638045.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|62127457|gb|AAX65160.1| cold shock protein-like protein [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|224468774|gb|ACN46604.1| putative cold shock protein [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|322714290|gb|EFZ05861.1| cold shock protein-like protein [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. A50]
          Length = 70

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G G ITP   ++   DV +H S+        L  G  V +  + N   G
Sbjct: 6  TGIVKTFDCKSGKGLITP---SDGRKDVQVHISSCRQHETEALIPGIRVEFCRI-NGLRG 61

Query: 64 KYSAEN 69
             A  
Sbjct: 62 PTDANV 67


>gi|298369567|ref|ZP_06980884.1| cold-shock DNA-binding domain family protein [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282124|gb|EFI23612.1| cold-shock DNA-binding domain family protein [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 364

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +GSI  ++ +KGYGFI     T +   +F H SA           GQ V++     +  G
Sbjct: 202 KGSIISWDDEKGYGFINYGSKTHN---IFFHISAFHYTNRR-PKTGQAVSFYCHPANGCG 257

Query: 64  KYSAENLKL 72
           K  A  + L
Sbjct: 258 KQKAARVVL 266


>gi|160900686|ref|YP_001566268.1| cold-shock DNA-binding domain-containing protein [Delftia
          acidovorans SPH-1]
 gi|160366270|gb|ABX37883.1| cold-shock DNA-binding domain protein [Delftia acidovorans SPH-1]
          Length = 219

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37
          M  +G +  +  ++G+GFI P+G    G  VF+H  +
Sbjct: 1  MRQQGRLTGWKDEQGFGFIEPDG---GGAQVFVHIKS 34


>gi|332859904|ref|XP_003317312.1| PREDICTED: cold shock domain-containing protein C2-like [Pan
          troglodytes]
          Length = 168

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36
          +G  K ++  +G+GFITPE      +D+F+H S
Sbjct: 70 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVS 99


>gi|332231339|ref|XP_003264854.1| PREDICTED: cold shock domain-containing protein C2-like [Nomascus
          leucogenys]
          Length = 168

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36
          +G  K ++  +G+GFITPE      +D+F+H S
Sbjct: 70 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVS 99


>gi|218132095|ref|ZP_03460899.1| hypothetical protein BACEGG_03722 [Bacteroides eggerthii DSM 20697]
 gi|317477121|ref|ZP_07936362.1| cold-shock' DNA-binding domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|217985745|gb|EEC52086.1| hypothetical protein BACEGG_03722 [Bacteroides eggerthii DSM 20697]
 gi|316906664|gb|EFV28377.1| cold-shock' DNA-binding domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 147

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG ++++N  +G+GFI      E     F H + V +     + EG +VT+D  +     
Sbjct: 85  RGRVEFFNESRGFGFIKDLSGVEK---YFFHVNNVVTE----IKEGNVVTFDLERGIKG- 136

Query: 64  KYSAENL 70
             +A N+
Sbjct: 137 -MNAVNI 142


>gi|73981088|ref|XP_856836.1| PREDICTED: similar to Cold shock domain protein E1 (UNR protein)
           (N-ras upstream gene protein) isoform 14 [Canis
           familiaris]
          Length = 763

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 650 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 700



 Score = 41.9 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           +GFI          ++F H S      L  L  G  V +     D NGK  A +   +P
Sbjct: 197 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDNDPLP 249



 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  +  
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92

Query: 76 S 76
           
Sbjct: 93 E 93


>gi|188991346|ref|YP_001903356.1| hypothetical protein xccb100_1951 [Xanthomonas campestris pv.
          campestris str. B100]
 gi|167733106|emb|CAP51304.1| Putative membrane protein [Xanthomonas campestris pv. campestris]
          Length = 204

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  ++  KG+GF+ P G    G+  F+H  A           G ++TY  VQ D
Sbjct: 1  MRYQGRLSDWDDHKGFGFVVPHG---GGERAFVHIGAFGPQRRRPCN-GDVLTY-AVQRD 55

Query: 61 ANGKYSAENLKLVPKSSN 78
          A+ +  A  ++   +S+ 
Sbjct: 56 AHARLKATQVRWADRSTQ 73


>gi|239501279|ref|ZP_04660589.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii
          AB900]
 gi|260555664|ref|ZP_05827884.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
 gi|260410575|gb|EEX03873.1| cold shock domain-containing protein CspD [Acinetobacter
          baumannii ATCC 19606]
          Length = 97

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
          + G IK YN DKG+GFI+         D+F H S   AS G       + V +  +  D 
Sbjct: 6  YTGRIKQYNADKGFGFISTTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56

Query: 62 NGKYSAENLKLVPK 75
           GK+ A  ++ +  
Sbjct: 57 RGKFKAIKIERIDP 70


>gi|29347294|ref|NP_810797.1| cold shock protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572828|ref|ZP_04850227.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29339193|gb|AAO76991.1| cold shock protein, putative DNA-binding protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837560|gb|EES65652.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 152

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG ++++N  +G+GFI      +     F H + V       ++EG +VT+D  +     
Sbjct: 86  RGRVEFFNEARGFGFIKDLAGVDK---YFFHVNNVVGN----ISEGNIVTFDLERGVKG- 137

Query: 64  KYSAENL 70
             +A N+
Sbjct: 138 -MNAVNI 143


>gi|255013951|ref|ZP_05286077.1| cold shock protein, putative DNA-binding protein [Bacteroides sp.
           2_1_7]
 gi|262382000|ref|ZP_06075138.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298375436|ref|ZP_06985393.1| cold shock protein [Bacteroides sp. 3_1_19]
 gi|301310539|ref|ZP_07216478.1| cold shock protein [Bacteroides sp. 20_3]
 gi|262297177|gb|EEY85107.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298267936|gb|EFI09592.1| cold shock protein [Bacteroides sp. 3_1_19]
 gi|300832113|gb|EFK62744.1| cold shock protein [Bacteroides sp. 20_3]
          Length = 148

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG + ++N  KG+GFI     TE     F H + V       ++   +VT+D  + D   
Sbjct: 86  RGRVDYFNEAKGFGFIRDLSGTEK---YFFHVNNVVDD----ISVNDIVTFDLERGDRG- 137

Query: 64  KYSAENL 70
             SA N+
Sbjct: 138 -LSAVNV 143


>gi|150007460|ref|YP_001302203.1| cold shock DNA-binding protein [Parabacteroides distasonis ATCC
           8503]
 gi|256839709|ref|ZP_05545218.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|149935884|gb|ABR42581.1| cold shock protein, putative DNA-binding protein [Parabacteroides
           distasonis ATCC 8503]
 gi|256738639|gb|EEU51964.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 148

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG + ++N  KG+GFI     TE     F H + V       ++   +VT+D  + D   
Sbjct: 86  RGRVDYFNEAKGFGFIRDLSGTEK---YFFHVNNVVDD----ISVNDIVTFDLERGDRG- 137

Query: 64  KYSAENL 70
             SA N+
Sbjct: 138 -LSAVNV 143


>gi|323456552|gb|EGB12419.1| hypothetical protein AURANDRAFT_61106 [Aureococcus anophagefferens]
          Length = 943

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 11/67 (16%)

Query: 7   IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE--GQLVTYDYVQNDANGK 64
           +K     +GYG I P+  +E    +F+H SA+ + G  +L+   G  ++YD        K
Sbjct: 633 VK----TRGYGLIAPDHGSEK---IFVHASALKAFGTKDLSSFVGTRMSYD--TGTRQNK 683

Query: 65  YSAENLK 71
             A +++
Sbjct: 684 PIALDVR 690


>gi|170693562|ref|ZP_02884721.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
 gi|170141717|gb|EDT09886.1| cold-shock DNA-binding domain protein [Burkholderia graminis
          C4D1M]
          Length = 33

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 40 SAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
            G   L EGQ VT++ VQ        A N++
Sbjct: 1  MNGFKTLKEGQKVTFEVVQGPKG--KQASNIQ 30


>gi|309790908|ref|ZP_07685450.1| hypothetical protein OSCT_1401 [Oscillochloris trichoides DG6]
 gi|308227022|gb|EFO80708.1| hypothetical protein OSCT_1401 [Oscillochloris trichoides DG6]
          Length = 190

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36
          G I  +  D+GYGFITP+     G DVFLH S
Sbjct: 6  GKITMWKEDRGYGFITPDH---GGPDVFLHAS 34


>gi|74204494|dbj|BAE43235.1| unnamed protein product [Mus musculus]
 gi|148673098|gb|EDL05045.1| lin-28 homolog B (C. elegans), isoform CRA_c [Mus musculus]
          Length = 96

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 4  RGSIKWYNPDKGYGF---ITPEGSTESGD-DVFLHR 35
           G  KW+N   G+GF   I+ EG+      DVF+H+
Sbjct: 54 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQ 89


>gi|4884156|emb|CAB43294.1| hypothetical protein [Homo sapiens]
          Length = 369

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 256 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 306


>gi|93005230|ref|YP_579667.1| cold-shock DNA-binding domain-containing protein [Psychrobacter
          cryohalolentis K5]
 gi|92392908|gb|ABE74183.1| cold-shock DNA-binding domain protein [Psychrobacter
          cryohalolentis K5]
          Length = 223

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 3  HRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +G + KW   DKG+GFI     TE+G+ VF H SA  +        G+ V +    ++ 
Sbjct: 9  QQGRVTKW-QDDKGFGFIE----TEAGESVFFHVSAFKAQ--RRPVIGEEVVFIVGYDNQ 61

Query: 62 NGKYSAENLK 71
            +  A+ ++
Sbjct: 62 R-RLQAKEVQ 70


>gi|262376761|ref|ZP_06069989.1| cold shock/excaliber domain-containing protein CspD
          [Acinetobacter lwoffii SH145]
 gi|262308471|gb|EEY89606.1| cold shock/excaliber domain-containing protein CspD
          [Acinetobacter lwoffii SH145]
          Length = 240

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G IK YN D+G+GFI  EG +    D+F H     +  +     G+ + +  V++ 
Sbjct: 1  MFQEGKIKTYNEDRGFGFIQIEGQS---KDLFFHVKDFPNKNVP-PRIGEKLKFLIVED- 55

Query: 61 ANGKYSAENL 70
           NGK+ A+++
Sbjct: 56 -NGKFKADHI 64


>gi|73981083|ref|XP_856712.1| PREDICTED: similar to Cold shock domain protein E1 (UNR protein)
           (N-ras upstream gene protein) isoform 12 [Canis
           familiaris]
          Length = 449

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 336 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 386


>gi|218248953|ref|YP_002374324.1| hypothetical protein PCC8801_4244 [Cyanothece sp. PCC 8801]
 gi|257062039|ref|YP_003139927.1| hypothetical protein Cyan8802_4306 [Cyanothece sp. PCC 8802]
 gi|218169431|gb|ACK68168.1| protein of unknown function DUF88 [Cyanothece sp. PCC 8801]
 gi|256592205|gb|ACV03092.1| protein of unknown function DUF88 [Cyanothece sp. PCC 8802]
          Length = 299

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 15/75 (20%)

Query: 8   KWYNPDK---------GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
           K ++ +K         GYGFI    +      +F H + +      +L +G  V +    
Sbjct: 228 KTFSSEKSEIISLQPGGYGFIKYPPNN-----LFFHFTDLVDVDFNDLEKGMKVEFSRGT 282

Query: 59  NDANGKYSAENLKLV 73
           ND  G+  A+N+K +
Sbjct: 283 ND-RGETVAKNVKPL 296


>gi|6014735|sp|P81622|CSPS_STRTR RecName: Full=Cold shock protein CspSt
          Length = 21

 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 3  HRGSIKWYNPDKGYGFITPEG 23
            G++KW+N +KG+GFIT E 
Sbjct: 1  KNGTVKWFNAEKGFGFITSED 21


>gi|242007282|ref|XP_002424470.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212507888|gb|EEB11732.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 994

 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF++   + E G ++F   + V    +  L  G  V ++ V N  NGK SA N
Sbjct: 878 DAVKGHFGFLS--YAVEDGKNLFFRMTEVKDGAM--LQPGDTVEFNLVTNHRNGKTSACN 933

Query: 70  LKLVPK 75
           +  V K
Sbjct: 934 VTKVSK 939



 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK-YSAENLKLV 73
           G+GFI      +    VF H S         L   Q V Y+      +G   SAEN+KL+
Sbjct: 704 GFGFIETISHDQE---VFFHFSNFDGDPEK-LELCQEVMYNLGSRSTSGSCMSAENVKLL 759

Query: 74  PKSS 77
           PK +
Sbjct: 760 PKGT 763



 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 179 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMSYDRRTGKPIASAVSKIAP 234

Query: 76  S 76
            
Sbjct: 235 E 235


>gi|237722793|ref|ZP_04553274.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260175082|ref|ZP_05761494.1| cold shock protein, putative DNA-binding protein [Bacteroides sp.
           D2]
 gi|293371814|ref|ZP_06618224.1| cold-shock DNA-binding domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|299147644|ref|ZP_07040708.1| cold shock protein [Bacteroides sp. 3_1_23]
 gi|315923310|ref|ZP_07919550.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|229447315|gb|EEO53106.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292633266|gb|EFF51837.1| cold-shock DNA-binding domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|298514431|gb|EFI38316.1| cold shock protein [Bacteroides sp. 3_1_23]
 gi|313697185|gb|EFS34020.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 161

 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG ++++N  +G+GFI      E     F H + V       + E  +VT+D  +     
Sbjct: 87  RGRVEFFNESRGFGFIKDLSGVEK---YFFHVNNVIGN----IAENNIVTFDLERGVKG- 138

Query: 64  KYSAENLKLVPKSSN 78
             +A N+ L  KS++
Sbjct: 139 -MNAINISLENKSTS 152


>gi|321479102|gb|EFX90058.1| hypothetical protein DAPPUDRAFT_309815 [Daphnia pulex]
          Length = 947

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG +GF+  E   E G  +F H S V       L     V +  + N   GK SA N
Sbjct: 820 DAIKGQFGFLNYE--MEDGKKLFFHLSEVKDN--ATLLPNDTVEFVLITNQRTGKSSACN 875

Query: 70  L 70
           +
Sbjct: 876 I 876



 Score = 41.5 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S      + +L  G  V ++   +  NGK  A ++  +  
Sbjct: 154 YGFIQ---CCERQARLFFHFSQFDGN-IEHLKIGDPVEFEVTYDRRNGKPIASSVSKIAP 209

Query: 76  S 76
            
Sbjct: 210 E 210



 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV-QNDANGKYSAENLKLVP 74
           +GFI          ++F H S        +L  G  V Y    +  ++GK SAEN+KL+ 
Sbjct: 667 FGFIENLSHD---KEIFFHYSHFDGDA-DSLDLGHEVQYTLTGKTPSSGKISAENVKLLK 722

Query: 75  KSS 77
           K +
Sbjct: 723 KGT 725


>gi|21231668|ref|NP_637585.1| integral membrane protein [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66768209|ref|YP_242971.1| integral membrane protein [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|21113365|gb|AAM41509.1| integral membrane protein [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66573541|gb|AAY48951.1| integral membrane protein [Xanthomonas campestris pv. campestris
          str. 8004]
          Length = 204

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G +  ++  KG+GF+ P G    G+  F+H  A           G ++TY  VQ D
Sbjct: 1  MRYQGRLSDWDDHKGFGFVVPHG---GGERAFVHIGAFGPQRRRPCN-GDVLTY-AVQRD 55

Query: 61 ANGKYSAENLKLVPKSSN 78
          A+ +  A  ++   +S+ 
Sbjct: 56 AHARLKATQVRWADRSTQ 73


>gi|18204965|gb|AAH21692.1| CSDE1 protein [Homo sapiens]
          Length = 272

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 159 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 209


>gi|262280132|ref|ZP_06057917.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          calcoaceticus RUH2202]
 gi|262260483|gb|EEY79216.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          calcoaceticus RUH2202]
          Length = 97

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
          + G +K Y+P+KG+GFI   G+ E   D+F H S   AS G       + V +  V N  
Sbjct: 6  YTGKVKQYDPEKGFGFI---GTAEG--DIFFHISDFPASEG--EPKRNEKVKFLAVDNQ- 57

Query: 62 NGKYSAENLKLVPK 75
           GK+ A  ++ +  
Sbjct: 58 -GKFKAIKIERIDP 70


>gi|295085350|emb|CBK66873.1| cold-shock DNA-binding protein family [Bacteroides xylanisolvens
           XB1A]
          Length = 161

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG ++++N  +G+GFI      E     F H + V       + E  +VT+D  +     
Sbjct: 87  RGRVEFFNESRGFGFIKDLSGVEK---YFFHVNNVVGN----IAENNIVTFDLERGVKG- 138

Query: 64  KYSAENLKL 72
             +A N+ L
Sbjct: 139 -MNAVNISL 146


>gi|256786238|ref|ZP_05524669.1| cold shock protein [Streptomyces lividans TK24]
          Length = 33

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 40 SAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
            G   L EGQ V ++  Q        A+ ++L
Sbjct: 1  MDGYRTLEEGQRVEFEISQGQKG--PQADMVRL 31


>gi|189465919|ref|ZP_03014704.1| hypothetical protein BACINT_02282 [Bacteroides intestinalis DSM
           17393]
 gi|189434183|gb|EDV03168.1| hypothetical protein BACINT_02282 [Bacteroides intestinalis DSM
           17393]
          Length = 149

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +N  +GYGFI   GS   G+  F H ++ A  G+   TEG  VT++  +       +A  
Sbjct: 93  FNVSRGYGFIKDLGS---GEKYFFHITS-APEGI---TEGDNVTFEIERGTRG--MNAVR 143

Query: 70  LKLV 73
           + ++
Sbjct: 144 ISII 147


>gi|145490580|ref|XP_001431290.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398394|emb|CAK63892.1| unnamed protein product [Paramecium tetraurelia]
          Length = 328

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 12/78 (15%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQN 59
           G++K+Y+  + YGFI  +     G D+F+H   +  AG     L     G ++ + ++  
Sbjct: 247 GTLKFYDEARSYGFIIMDM---DGSDLFVHCDDLTKAGMTKDFLRTAKHGNIIRFSFLIL 303

Query: 60  DANGK----YSAENLKLV 73
           +  GK      A +L+ +
Sbjct: 304 EYFGKYNKSRKAVDLQFI 321


>gi|145486210|ref|XP_001429112.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396202|emb|CAK61714.1| unnamed protein product [Paramecium tetraurelia]
          Length = 330

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 12/78 (15%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQN 59
           G++K+Y+  + YGFI  +     G D+F+H   +  AG     L     G ++ + ++  
Sbjct: 249 GTLKFYDEARSYGFIIMDM---DGSDLFVHCDDLTKAGMTKDFLRTAKHGNIIRFSFLIL 305

Query: 60  DANGK----YSAENLKLV 73
           +  GK      A +L+ +
Sbjct: 306 EYFGKYNKSRKAVDLQFI 323


>gi|227330242|ref|ZP_03834266.1| hypothetical protein PcarcW_24001 [Pectobacterium carotovorum
          subsp. carotovorum WPP14]
          Length = 36

 Score = 42.2 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/15 (66%), Positives = 13/15 (86%)

Query: 7  IKWYNPDKGYGFITP 21
          +KW+N  KG+GFITP
Sbjct: 1  VKWFNESKGFGFITP 15


>gi|300694070|ref|YP_003750043.1| cold shock activator transcription regulator protein [Ralstonia
          solanacearum PSI07]
 gi|299076107|emb|CBJ35418.1| putative cold shock activator transcription regulator protein
          [Ralstonia solanacearum PSI07]
          Length = 68

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          F+  S +  +GL    EGQ V++D V    +G+  A N+K +
Sbjct: 28 FIRDSEIQLSGLQRFYEGQRVSFDVVMG-PDGELIAVNIKPI 68


>gi|299771405|ref|YP_003733431.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1]
 gi|298701493|gb|ADI92058.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1]
          Length = 97

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
          + G +K Y+PDKG+GFI+         D+F H S   AS G       + V +  +  D 
Sbjct: 6  YTGKVKQYDPDKGFGFISTTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56

Query: 62 NGKYSAENLKLVPK 75
           GK+ A  ++ +  
Sbjct: 57 QGKFKAIKIERIDP 70


>gi|237713857|ref|ZP_04544338.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409234|ref|ZP_06085778.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645799|ref|ZP_06723483.1| cold-shock DNA-binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294809472|ref|ZP_06768176.1| cold-shock DNA-binding domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|298482321|ref|ZP_07000508.1| cold shock protein [Bacteroides sp. D22]
 gi|229446013|gb|EEO51804.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352981|gb|EEZ02077.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638878|gb|EFF57212.1| cold-shock DNA-binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294443344|gb|EFG12107.1| cold-shock DNA-binding domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|298271608|gb|EFI13182.1| cold shock protein [Bacteroides sp. D22]
          Length = 161

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 9/69 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG ++++N  +G+GFI      E     F H + V       +TE  +VT+D  +     
Sbjct: 87  RGRVEFFNESRGFGFIKDLSGVEK---YFFHVNNVVGN----ITENNIVTFDLERGVKG- 138

Query: 64  KYSAENLKL 72
             +A N+ L
Sbjct: 139 -MNAVNISL 146


>gi|207724748|ref|YP_002255145.1| cold shock protein activator [Ralstonia solanacearum MolK2]
 gi|206589971|emb|CAQ36932.1| cold shock protein activator [Ralstonia solanacearum MolK2]
          Length = 68

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          F+  S +  +GL    EGQ V++D V    +G+  A N+K +
Sbjct: 28 FIRDSEIQLSGLQRFREGQRVSFDVVMG-PDGELIAVNIKPI 68


>gi|301118164|ref|XP_002906810.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora
           infestans T30-4]
 gi|262108159|gb|EEY66211.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora
           infestans T30-4]
          Length = 893

 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNL----TEGQLVTYDYVQNDANGKYSAENL 70
           +G I    S + G   F+H S ++   + N+    +EGQ + ++ +Q+ A+GK S   L
Sbjct: 785 FGAILEASSGQRG---FVHISELSRDKVSNIHDVVSEGQEMEFECLQDGASGKMSRRVL 840


>gi|74144586|dbj|BAE27281.1| unnamed protein product [Mus musculus]
          Length = 449

 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 336 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 386


>gi|145488336|ref|XP_001430172.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397268|emb|CAK62774.1| unnamed protein product [Paramecium tetraurelia]
          Length = 328

 Score = 41.9 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 12/78 (15%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQN 59
           G++K+Y+  + YGFI  +     G D+F+H   +  AG     L     G ++ + ++  
Sbjct: 247 GTLKFYDEARAYGFIIMDL---DGSDLFVHCDDLTKAGMTKDFLRTAKHGNIIRFSFLIL 303

Query: 60  DANGK----YSAENLKLV 73
           +  GK      A +L+ +
Sbjct: 304 EYFGKYNKSKKAVDLQFI 321


>gi|116283763|gb|AAH29058.1| Csde1 protein [Mus musculus]
          Length = 449

 Score = 41.9 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 336 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 386


>gi|115733035|ref|XP_789065.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115950422|ref|XP_001190119.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 825

 Score = 41.9 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 11  NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +  KG YGF+  +  T  G  +F H S V +  +     G  V +  + N    + SA N
Sbjct: 719 DSIKGQYGFL--DYDTGDGKKLFFHMSEVINGDVHT---GDDVEFVLITNQRTSRQSAVN 773

Query: 70  LKLV 73
           ++ V
Sbjct: 774 VRKV 777



 Score = 38.0 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGF+        G  +F H S      +  L  G  V ++ + +   GK  A  +  +P 
Sbjct: 72  YGFLQ--CCDRDGR-LFFHYSHFEGP-IDTLHIGDPVEFEMISDRRTGKPIASRIMRLPP 127


>gi|221119228|ref|XP_002164427.1| PREDICTED: similar to upstream of NRAS, partial [Hydra
           magnipapillata]
          Length = 456

 Score = 41.9 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      ++  ++F H S      +  L  G  V Y+  +    GK +A N+K +P 
Sbjct: 221 FGFIER---ADTVAEIFFHYSEFKDD-INELLIGDDVEYELQE--RAGKETAVNIKKLPT 274

Query: 76  SS 77
            +
Sbjct: 275 GT 276


>gi|292489023|ref|YP_003531910.1| cold shock-like protein CspL [Erwinia amylovora CFBP1430]
 gi|292900156|ref|YP_003539525.1| cold shock protein [Erwinia amylovora ATCC 49946]
 gi|291200004|emb|CBJ47128.1| putative cold shock protein [Erwinia amylovora ATCC 49946]
 gi|291554457|emb|CBA21960.1| Cold shock-like protein cspLA (CspL) [Erwinia amylovora CFBP1430]
 gi|312173187|emb|CBX81442.1| Cold shock-like protein cspLA (CspL) [Erwinia amylovora ATCC
          BAA-2158]
          Length = 160

 Score = 41.9 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K+VP S
Sbjct: 54 NKG--LSACAVKVVPDS 68


>gi|221106282|ref|XP_002168685.1| PREDICTED: similar to RNA-binding protein pippin, partial [Hydra
          magnipapillata]
          Length = 93

 Score = 41.9 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G++  +  +KG+GF+ P+    +   VFLH S +     + +  G  V +  +      
Sbjct: 11 NGTVVSFCREKGHGFVKPDNEERN---VFLHISDIEDE--YVVQTGDRVEFRTIPMPPKC 65

Query: 64 -KYSAENLKLVP 74
           +  A  ++L+ 
Sbjct: 66 VERMAVEVRLIE 77


>gi|153809379|ref|ZP_01962047.1| hypothetical protein BACCAC_03693 [Bacteroides caccae ATCC 43185]
 gi|149127965|gb|EDM19187.1| hypothetical protein BACCAC_03693 [Bacteroides caccae ATCC 43185]
          Length = 152

 Score = 41.9 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG ++++N  +G+GFI      E     F H + V       + E  +VT+D  +     
Sbjct: 90  RGRVEFFNEARGFGFIKDLNGVEK---YFFHVNNVVGN----IVENNIVTFDLERGTKG- 141

Query: 64  KYSAENLKLVPK 75
             +A N+ L  +
Sbjct: 142 -MNAVNICLEKQ 152


>gi|260551019|ref|ZP_05825224.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter
          sp. RUH2624]
 gi|260405967|gb|EEW99454.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter
          sp. RUH2624]
          Length = 97

 Score = 41.9 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 10/72 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDANG 63
          G +K YN DKG+GFI+         D+F H S   AS G       + V +  +  D  G
Sbjct: 8  GRVKQYNADKGFGFISTTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADNQG 58

Query: 64 KYSAENLKLVPK 75
          K+ A  ++ V  
Sbjct: 59 KFKAIKIERVDP 70


>gi|283780224|ref|YP_003370979.1| cold-shock DNA-binding domain-containing protein [Pirellula
          staleyi DSM 6068]
 gi|283438677|gb|ADB17119.1| cold-shock DNA-binding domain protein [Pirellula staleyi DSM
          6068]
          Length = 139

 Score = 41.5 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G IK  + ++G+GFI  +     G DV+ H + V       +   Q V Y+  + D 
Sbjct: 1  MQYGIIKSVSFERGFGFIRQQR----GLDVYFHATVVVDQAFERIQPDQPVKYELEKRDR 56

Query: 62 NGKY 65
          +   
Sbjct: 57 DAPK 60


>gi|197286813|ref|YP_002152685.1| cold-shock protein [Proteus mirabilis HI4320]
 gi|227354996|ref|ZP_03839407.1| cold-shock protein [Proteus mirabilis ATCC 29906]
 gi|194684300|emb|CAR45869.1| putative cold-shock protein [Proteus mirabilis HI4320]
 gi|227164783|gb|EEI49630.1| cold-shock protein [Proteus mirabilis ATCC 29906]
          Length = 160

 Score = 41.5 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1  MVHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I KW+  DKG+GFI      E+GD+ + H   +  A    + +  +VT++   N
Sbjct: 1  MAMNGTITKWF-EDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAIVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
                SA  +K++P S
Sbjct: 54 MKG--LSAYAVKVIPDS 68


>gi|72116887|ref|XP_788134.1| PREDICTED: similar to snEchinoidin [Strongylocentrotus purpuratus]
 gi|115950839|ref|XP_001185543.1| PREDICTED: similar to snEchinoidin [Strongylocentrotus purpuratus]
          Length = 768

 Score = 41.5 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
            G +K YN  + +GFI    +      VF H SAV       +  G  V +D       
Sbjct: 222 TGVVKQYNDKRRFGFIRVNDTYNK---VFFHISAVPE---KYIEVGDEVRFDLFVGPKG 274


>gi|320353127|ref|YP_004194466.1| Excalibur domain-containing protein [Desulfobulbus propionicus
          DSM 2032]
 gi|320121629|gb|ADW17175.1| Excalibur domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 186

 Score = 41.5 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 1  MVHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQ 58
          M   G++ KW N ++G+G ITP      G D+ +  +     G    L E   +++   +
Sbjct: 1  MHTEGTLTKW-NSERGFGLITP---RRGGQDIAVQAADFPQDGCPPQLNE--RLSFSI-E 53

Query: 59 NDANGKYSAENL 70
           DA GK  A+N+
Sbjct: 54 TDAGGKRWAKNV 65


>gi|268592402|ref|ZP_06126623.1| putative cold-shock protein [Providencia rettgeri DSM 1131]
 gi|291312188|gb|EFE52641.1| putative cold-shock protein [Providencia rettgeri DSM 1131]
          Length = 160

 Score = 41.5 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   VA+  L  + +   VT++   N
Sbjct: 1  MAMNGTITTWF-EDKGFGFI----KDENGDNRYFHVVKVANPDL--IKKNAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K++P+S
Sbjct: 54 NKG--LSAFAVKVIPES 68


>gi|227114570|ref|ZP_03828226.1| putative cold-shock protein [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
          Length = 160

 Score = 41.5 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAEVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K+VP+S
Sbjct: 54 NKG--LSAYAVKVVPES 68


>gi|320163709|gb|EFW40608.1| hypothetical protein CAOG_01133 [Capsaspora owczarzaki ATCC 30864]
          Length = 1075

 Score = 41.5 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E   D+F H  AV  + +  L     V +  ++   +G+  A  ++L+P+
Sbjct: 401 YGFIERADMDE---DIFFHFRAVDPS-VGELKPSDEVDFIPIK--RSGQLVASAIRLLPR 454

Query: 76  SS 77
            +
Sbjct: 455 GT 456


>gi|50120514|ref|YP_049681.1| putative cold-shock protein [Pectobacterium atrosepticum
          SCRI1043]
 gi|49611040|emb|CAG74485.1| putative cold-shock protein [Pectobacterium atrosepticum
          SCRI1043]
          Length = 160

 Score = 41.5 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K+VP+S
Sbjct: 54 NKG--LSAYAVKVVPES 68


>gi|207739418|ref|YP_002257811.1| cold shock protein activator [Ralstonia solanacearum IPO1609]
 gi|206592793|emb|CAQ59699.1| cold shock protein activator [Ralstonia solanacearum IPO1609]
          Length = 68

 Score = 41.5 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          F+  S +  +GL    EGQ V++D V    +G+  A N+K +
Sbjct: 28 FIRDSEIQLSGLQRFREGQRVSFDVVMG-PDGELIAVNIKPI 68


>gi|325121095|gb|ADY80618.1| hypothetical protein BDGL_000032 [Acinetobacter calcoaceticus
          PHEA-2]
          Length = 97

 Score = 41.5 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 10/74 (13%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
          + G +K YN DKG+GFI          D+F H S   AS G       + V +  +  D 
Sbjct: 6  YTGWVKQYNADKGFGFIETTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56

Query: 62 NGKYSAENLKLVPK 75
           GK+ A  ++ V  
Sbjct: 57 QGKFKAIKIERVDP 70


>gi|289664292|ref|ZP_06485873.1| cold-shock DNA-binding protein family protein [Xanthomonas
          campestris pv. vasculorum NCPPB702]
          Length = 94

 Score = 41.5 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M   G++  ++ D+G+G ITP    + GD+ F+H SA    G      G+ ++++
Sbjct: 1  MRTHGTLTRWSTDRGFGLITP---AQPGDEQFVHISAFPR-GFEAPRIGEALSFE 51


>gi|323449559|gb|EGB05446.1| hypothetical protein AURANDRAFT_18065 [Aureococcus
          anophagefferens]
          Length = 51

 Score = 41.5 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 7/51 (13%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          G++ W++  K YGFI+PE   ++    FLH   +       + +GQ V ++
Sbjct: 1  GTLLWFDQTKQYGFISPENGHDN---YFLHGIDI----YDQVHKGQKVQFE 44


>gi|319955580|ref|YP_004166847.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
           14237]
 gi|319424240|gb|ADV51349.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM
           14237]
          Length = 147

 Score = 41.5 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V +G ++++N  KGYGFI    + E     F+H   V    L  + E  +V ++  +   
Sbjct: 85  VRKGRVEFFNDSKGYGFIKDTETQEK---FFVH---VQGC-LEEIKENNMVQFELERGMK 137

Query: 62  NGKYSAENLKLV 73
               +A  +K V
Sbjct: 138 G--MNAVRVKKV 147


>gi|313225212|emb|CBY21006.1| unnamed protein product [Oikopleura dioica]
          Length = 643

 Score = 41.5 bits (97), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
           +GFI  EG      D+F H S   + G   L +   V      ND +G+++A  +  V
Sbjct: 572 FGFIRIEGVD---GDIFFHSS--EADGFDTLKKDDWVQSTIEWNDRSGRWNATKVTKV 624



 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQN-----DANGKYS 66
           G+GFI  E + +    +F H S V     A    +  G  V +  +++     +  G+  
Sbjct: 381 GFGFIKREKAQKGDSRIFFHSSEVLEQQPASNKKIKVGDQVEFLTLRDPLARANYRGRCH 440

Query: 67  AENLKLVPKS 76
           A  ++++ +S
Sbjct: 441 ATRIRIIAQS 450


>gi|293609127|ref|ZP_06691430.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829700|gb|EFF88062.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 97

 Score = 41.5 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
          + G +K YNPDKG+GFI          D+F H S   AS G       + V +  +  D 
Sbjct: 6  YTGWVKQYNPDKGFGFIETTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56

Query: 62 NGKYSAENLKLVPK 75
           GK+ A  ++ V  
Sbjct: 57 QGKFKAIKIERVDP 70


>gi|313221461|emb|CBY32211.1| unnamed protein product [Oikopleura dioica]
          Length = 643

 Score = 41.5 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
           +GFI  EG      D+F H S   + G   L +   V      ND +G+++A  +  V
Sbjct: 572 FGFIRIEGVD---GDIFFHSS--EADGFDTLKKDDWVQSTIEWNDRSGRWNATKVTKV 624



 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQN-----DANGKYS 66
           G+GFI  E + +    +F H S V     A    +  G  V +  +++     +  G+  
Sbjct: 381 GFGFIKREKAQKGDSRIFFHSSEVLEQQPASNKKIKVGDQVEFLTLRDPLARANYRGRCH 440

Query: 67  AENLKLVPKS 76
           A  ++++ +S
Sbjct: 441 ATRIRIIAQS 450


>gi|198417545|ref|XP_002127595.1| PREDICTED: similar to AGAP004937-PA [Ciona intestinalis]
          Length = 1110

 Score = 41.5 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 4    RGSIKWYNPDKG-YGFITPE----GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58
            + ++   +  KG +GFI  E     +T     +F H S V       +T G  V +  + 
Sbjct: 982  KATV---DSIKGEFGFINYEVKGGDTTGGSGKLFFHMSEV-RDATQQITAGSTVEFSVIY 1037

Query: 59   NDANGKYSAENLKL 72
            N  +GK+SA  ++L
Sbjct: 1038 NQRSGKFSASKVRL 1051



 Score = 36.9 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 4/62 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI           +F H S         L     + ++   +   GK  A  +  + K
Sbjct: 158 YGFIKCADREGR---LFFHYSQFHGEAH-TLHINDEIEFEVSMDTRTGKPVAVQVVKLQK 213

Query: 76  SS 77
            +
Sbjct: 214 GT 215


>gi|17549275|ref|NP_522615.1| hypothetical protein RS02391 [Ralstonia solanacearum GMI1000]
 gi|17431527|emb|CAD18205.1| putative cold shock activator transcription regulator protein
          [Ralstonia solanacearum GMI1000]
          Length = 68

 Score = 41.1 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          F+  S +    L  L EGQ V++D V    +G+  A N+K +
Sbjct: 28 FIRDSEIQLLRLQRLHEGQRVSFDVVMG-PDGEPIAVNIKPI 68


>gi|167761791|ref|ZP_02433918.1| hypothetical protein BACSTE_00132 [Bacteroides stercoris ATCC
           43183]
 gi|167700297|gb|EDS16876.1| hypothetical protein BACSTE_00132 [Bacteroides stercoris ATCC
           43183]
          Length = 146

 Score = 41.1 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           RG I+++N  +G+GFI      E     F H + V +     + EG +VT+D  +     
Sbjct: 85  RGRIEFFNEARGFGFIKDLAGIEK---YFFHVNNVVTD----VREGNIVTFDLERGAKG- 136

Query: 64  KYSAENL 70
             +A N+
Sbjct: 137 -MNAVNI 142


>gi|317491867|ref|ZP_07950302.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920301|gb|EFV41625.1| cold-shock' DNA-binding domain-containing protein
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 160

 Score = 41.1 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K++P+S
Sbjct: 54 NKG--LSAYAVKVIPES 68


>gi|302039051|ref|YP_003799373.1| cold shock protein modulated with ribosomal subunit interface-like
           protein [Candidatus Nitrospira defluvii]
 gi|300607115|emb|CBK43448.1| Cold shock protein modulated with ribosomal subunit interface-like
           protein [Candidatus Nitrospira defluvii]
          Length = 181

 Score = 41.1 bits (96), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           GYGFI      + G +V+ H++AV      ++ +GQ V ++    +  
Sbjct: 124 GYGFI----LKDGGGEVYFHKNAVKGIPFNDMEDGQEVIFESEPGEKG 167


>gi|56413767|ref|YP_150842.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|197362689|ref|YP_002142326.1| cold shock protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|56128024|gb|AAV77530.1| putative cold shock protein [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|197094166|emb|CAR59669.1| putative cold shock protein [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
          Length = 70

 Score = 41.1 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G G ITP    +   DV  H SA        L  G  V +  + N   G
Sbjct: 6  TGIVKTFDCKSGKGLITPS---DGRKDVQFHISACRLHETEALIPGIRVEFCRI-NGLRG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PTAANV 67


>gi|218688877|ref|YP_002397089.1| stress protein, member of the CspA-family [Escherichia coli ED1a]
 gi|218426441|emb|CAR07267.1| stress protein, member of the CspA-family [Escherichia coli ED1a]
          Length = 70

 Score = 41.1 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G GFI P    +   +V +H SA        L     V +  V N   G
Sbjct: 6  TGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRDAEVLIPRLRVEFCRV-NGLRG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PTAANV 67


>gi|218133365|ref|ZP_03462169.1| hypothetical protein BACPEC_01230 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992238|gb|EEC58242.1| hypothetical protein BACPEC_01230 [Bacteroides pectinophilus ATCC
           43243]
          Length = 452

 Score = 41.1 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           G+GFI  E      +DV++  S +   GL     G     D VQ     K S E
Sbjct: 93  GFGFIRCENYLPGENDVYVAPSQIRRFGLKT---G-----DIVQGPKRAKNSGE 138


>gi|326801474|ref|YP_004319293.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
 gi|326552238|gb|ADZ80623.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
          Length = 262

 Score = 40.7 bits (95), Expect = 0.060,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37
          +  G IKW+N  KG+G       T SG  VF+H  +
Sbjct: 1  MEIGVIKWFNNSKGFG----VADTVSGQ-VFVHIKS 31


>gi|149573030|ref|XP_001520218.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 502

 Score = 40.7 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 5  GSIKWYNPDKGYGFITP 21
          G++KW+N   GYGFI  
Sbjct: 63 GTVKWFNVRNGYGFINR 79


>gi|295133858|ref|YP_003584534.1| cold shock-like protein [Zunongwangia profunda SM-A87]
 gi|294981873|gb|ADF52338.1| cold shock-like protein [Zunongwangia profunda SM-A87]
          Length = 145

 Score = 40.7 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G +  +  +KG+GFI  + S   GD++F+H        +  L+E   V+Y   ++    
Sbjct: 84  TGVVISFFENKGFGFIKDDIS---GDNIFVHH----QDSVKPLSERMKVSYRKERSPKG- 135

Query: 64  KYSAENLKLV 73
            + A +++++
Sbjct: 136 -FQATSVEVL 144


>gi|261822120|ref|YP_003260226.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
 gi|261606133|gb|ACX88619.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae
          WPP163]
          Length = 160

 Score = 40.7 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K+VP+S
Sbjct: 54 NKG--LSAYAVKVVPES 68


>gi|226327443|ref|ZP_03802961.1| hypothetical protein PROPEN_01314 [Proteus penneri ATCC 35198]
 gi|225203969|gb|EEG86323.1| hypothetical protein PROPEN_01314 [Proteus penneri ATCC 35198]
          Length = 160

 Score = 40.7 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 12/78 (15%)

Query: 1  MVHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLH-RSAVASAGLFNLTEGQLVTYDYVQ 58
          M   G I KW+  DKG+GFI      E+GD+ + H       A +        VT++   
Sbjct: 1  MAMNGIITKWF-EDKGFGFI----KDENGDNRYFHVIKVANPALIKT---DANVTFEPTT 52

Query: 59 NDANGKYSAENLKLVPKS 76
          N      SA  +K++P S
Sbjct: 53 NTKG--LSAYAVKVIPDS 68


>gi|195375638|ref|XP_002046607.1| GJ12391 [Drosophila virilis]
 gi|194153765|gb|EDW68949.1| GJ12391 [Drosophila virilis]
          Length = 1040

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 200 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 255

Query: 76  S 76
            
Sbjct: 256 E 256


>gi|262375196|ref|ZP_06068430.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          lwoffii SH145]
 gi|262310209|gb|EEY91338.1| cold-shock DNA-binding domain-containing protein [Acinetobacter
          lwoffii SH145]
          Length = 208

 Score = 40.7 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 1  MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M  +G  ++W++   GYGFI P    +    VFLH    A  G   +  G  + Y  + +
Sbjct: 1  MRDQGRLVEWFDDQ-GYGFIQPSDPAKDR--VFLHIKDFAKPGPRPIV-GCALDYLVILD 56

Query: 60 DANGKYSAENL 70
          +  G+Y A+ +
Sbjct: 57 E-RGRYRAQQV 66


>gi|254518105|ref|ZP_05130161.1| ribonuclease R [Clostridium sp. 7_2_43FAA]
 gi|226911854|gb|EEH97055.1| ribonuclease R [Clostridium sp. 7_2_43FAA]
          Length = 745

 Score = 40.7 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
            KG+GF+ PE  TE   DVF+  S++  A       G  V     + D NGK     ++ 
Sbjct: 76  QKGFGFLLPE--TEGEKDVFIPSSSMNGA-----MNGDKVLVQITREDLNGKKREGEVRE 128

Query: 73  VPKSSN 78
           V + SN
Sbjct: 129 VLERSN 134


>gi|53803587|ref|YP_114575.1| cold-shock domain-contain protein [Methylococcus capsulatus str.
          Bath]
 gi|53757348|gb|AAU91639.1| cold-shock domain family protein [Methylococcus capsulatus str.
          Bath]
          Length = 225

 Score = 40.7 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           +KG+GFI P        D+F+H SA           G +V Y   + +A+G+ 
Sbjct: 27 DEKGFGFIRPFAGDH---DLFIHISAFKKGMSRRPQVGDIVHYRI-ETEADGRE 76


>gi|255535685|ref|YP_003096056.1| Cold-shock protein, DNA-binding [Flavobacteriaceae bacterium
           3519-10]
 gi|255341881|gb|ACU07994.1| Cold-shock protein, DNA-binding [Flavobacteriaceae bacterium
           3519-10]
          Length = 104

 Score = 40.7 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 10/74 (13%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           +V  G +  +  DKGYGFIT  GS E+   VF H     +     + +G  V+++  ++ 
Sbjct: 41  LVKTGIVT-FLSDKGYGFITEAGSQEN---VFFH----ENNCAHQVKKGNKVSFEKERSP 92

Query: 61  ANGKYSAENLKLVP 74
               +SA N+++V 
Sbjct: 93  KG--FSAINIQIVK 104


>gi|224539726|ref|ZP_03680265.1| hypothetical protein BACCELL_04635 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518649|gb|EEF87754.1| hypothetical protein BACCELL_04635 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 149

 Score = 40.7 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           +N  +GYGFI   GS   G+  F H ++ A  G+   TEG  VT++  +       +A  
Sbjct: 93  FNVSRGYGFIKDLGS---GEKYFFHVTS-APEGI---TEGDNVTFEIERGTRG--MNAVR 143

Query: 70  LKLV 73
           + ++
Sbjct: 144 ISII 147


>gi|146310755|ref|YP_001175829.1| cold-shock DNA-binding domain-containing protein [Enterobacter
          sp. 638]
 gi|145317631|gb|ABP59778.1| cold-shock DNA-binding protein family [Enterobacter sp. 638]
          Length = 161

 Score = 40.7 bits (95), Expect = 0.075,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-EDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K++P+S
Sbjct: 54 NKG--LSAFAVKVLPES 68


>gi|121604253|ref|YP_981582.1| cold-shock DNA-binding domain-containing protein [Polaromonas
          naphthalenivorans CJ2]
 gi|120593222|gb|ABM36661.1| cold-shock DNA-binding protein family [Polaromonas
          naphthalenivorans CJ2]
          Length = 69

 Score = 40.7 bits (95), Expect = 0.075,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          G +K Y P KG+GFI+       G D+F +R +V       L EG  V++     +    
Sbjct: 8  GVVKVYYPLKGFGFISRAK----GKDLFFYRDSVKDE--AALIEGATVSFQIKTTEKG-- 59

Query: 65 YSAENLK 71
            A NL 
Sbjct: 60 LRAVNLT 66


>gi|331668013|ref|ZP_08368868.1| conserved domain protein [Escherichia coli TA271]
 gi|331064755|gb|EGI36659.1| conserved domain protein [Escherichia coli TA271]
          Length = 66

 Score = 40.3 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G G ITP   ++   DV LH SA+       +T G  V +  + N   G
Sbjct: 2  TGIVKNFDGKSGKGLITP---SDGRIDVQLHVSALNLRDAEEITTGLRVEFYRI-NGLRG 57

Query: 64 KYSAEN 69
            +A  
Sbjct: 58 PSAANV 63


>gi|56758052|gb|AAW27166.1| SJCHGC09481 protein [Schistosoma japonicum]
 gi|226488138|emb|CAX75734.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
           heat-stable protein of 24 kDa) [Schistosoma japonicum]
 gi|226489182|emb|CAX75735.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
           heat-stable protein of 24 kDa) [Schistosoma japonicum]
 gi|226489184|emb|CAX75736.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
           heat-stable protein of 24 kDa) [Schistosoma japonicum]
 gi|226489186|emb|CAX75737.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
           heat-stable protein of 24 kDa) [Schistosoma japonicum]
 gi|226489188|emb|CAX75738.1| Calcium-regulated heat stable protein 1 (Calcium-regulated
           heat-stable protein of 24 kDa) [Schistosoma japonicum]
          Length = 117

 Score = 40.3 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD-YVQNDANGKYSAE 68
           +   KG+GFI P+     GD +F+H   +   G +   EG +V Y   +    N KY A 
Sbjct: 44  FCRKKGHGFIKPD---NGGDYLFVHVFDI--DGEYVPIEGDVVEYRKMLIPPKNEKYQAV 98

Query: 69  NLKLVPKSS 77
           ++++V  SS
Sbjct: 99  HVRIVNLSS 107


>gi|178847411|pdb|2YTV|A Chain A, Solution Structure Of The Fifth Cold-Shock Domain Of The
          Human Kiaa0885 Protein (Unr Protein)
          Length = 79

 Score = 40.3 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
          +GFI  E        +F H   V   G+  L  G  V +  + N   GK SA N+
Sbjct: 20 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 70


>gi|332667285|ref|YP_004450073.1| hypothetical protein Halhy_5375 [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336099|gb|AEE53200.1| protein of unknown function DUF88 [Haliscomenobacter hydrossis DSM
           1100]
          Length = 315

 Score = 40.3 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           GYGFI    +      VF H S++      +L  G  V +   +   +G+  A+ + +V 
Sbjct: 262 GYGFIKFPPNN-----VFFHFSSLVDYDFNDLEIGDSVQFSL-EPKEDGRMMAKEVIVVE 315


>gi|118382335|ref|XP_001024325.1| hypothetical protein TTHERM_00532020 [Tetrahymena thermophila]
 gi|89306092|gb|EAS04080.1| hypothetical protein TTHERM_00532020 [Tetrahymena thermophila
           SB210]
          Length = 452

 Score = 40.3 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTE 48
            GS+K+++  K +GF   +     G D+F++   +  AG+    L E
Sbjct: 305 TGSLKFFDEKKNFGFFVLDS---DGSDIFVYYDDLEQAGITKKMLKE 348


>gi|332972912|gb|EGK10854.1| ribonuclease R [Desmospora sp. 8437]
          Length = 765

 Score = 40.3 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVA--SAGLFNL-------TEGQLVTYDYVQNDAN 62
             KG+GF+ P+       DVF+H + +     G F L        EG     + V+    
Sbjct: 71  NAKGFGFVLPDAEFPFEQDVFIHGTDMNGAMDGDFVLARVESYKKEGMRPEGEIVRILKR 130

Query: 63  GKYSAE 68
           G+  A 
Sbjct: 131 GRTEAV 136


>gi|322501458|emb|CBZ36537.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1902

 Score = 40.3 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           +G +  E +     D+F+H S ++  G     +G  V +  
Sbjct: 816 FGKLEREPAQLG--DIFVHHSCISMDGFRVFVQGTAVRFSV 854


>gi|284036854|ref|YP_003386784.1| Cold-shock protein DNA-binding protein [Spirosoma linguale DSM
          74]
 gi|283816147|gb|ADB37985.1| Cold-shock protein DNA-binding protein [Spirosoma linguale DSM
          74]
          Length = 290

 Score = 40.3 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41
          VH G +K Y P+KG+GF++    +++  DVF H   V  +
Sbjct: 3  VHFGVVKKYFPEKGFGFVSHPLDSKTRQDVFFHIKNVQKS 42


>gi|146094937|ref|XP_001467428.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134071793|emb|CAM70486.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
          Length = 1901

 Score = 40.3 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           +G +  E +     D+F+H S ++  G     +G  V +  
Sbjct: 816 FGKLEREPAQLG--DIFVHHSCISMDGFRVFVQGTAVRFSV 854


>gi|148261973|ref|YP_001236100.1| cold-shock DNA-binding domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|326405482|ref|YP_004285564.1| putative cold shock protein [Acidiphilium multivorum AIU301]
 gi|146403654|gb|ABQ32181.1| cold-shock DNA-binding protein family [Acidiphilium cryptum JF-5]
 gi|325052344|dbj|BAJ82682.1| putative cold shock protein [Acidiphilium multivorum AIU301]
          Length = 186

 Score = 40.3 bits (94), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +  +  D  YGFI     T+ G +V+ HR++VA  G   L  G  V     +   +G 
Sbjct: 120 GQVVRFVADADYGFIA----TDDGREVYFHRNSVAGNGFARLRVGDDVRLAVAEG-RDGP 174

Query: 65  YS 66
            +
Sbjct: 175 QA 176


>gi|227327353|ref|ZP_03831377.1| putative cold-shock protein [Pectobacterium carotovorum subsp.
          carotovorum WPP14]
          Length = 160

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+G++ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGENRYFHV--IKVANPDLIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K++P+S
Sbjct: 54 NKG--LSAYAVKVLPES 68


>gi|195171040|ref|XP_002026319.1| GL24571 [Drosophila persimilis]
 gi|194111214|gb|EDW33257.1| GL24571 [Drosophila persimilis]
          Length = 990

 Score = 40.3 bits (94), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           YGFI      E    +F H S  +   + +L  G  V ++   +   GK  A  +  +  
Sbjct: 190 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 245

Query: 76  S 76
            
Sbjct: 246 E 246


>gi|75910292|ref|YP_324588.1| cold-shock DNA-binding protein family protein [Anabaena variabilis
           ATCC 29413]
 gi|75704017|gb|ABA23693.1| cold-shock DNA-binding protein family [Anabaena variabilis ATCC
           29413]
          Length = 188

 Score = 40.3 bits (94), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
            D+GYGFI     T  G +V+ HR+++ +     L  G  + +   + D      A  ++
Sbjct: 126 SDEGYGFIE----TPDGSEVYFHRNSLFNGDFEQLQVGDEIRFAQEEGDKG--PQASTVR 179

Query: 72  LV 73
           L+
Sbjct: 180 LI 181


>gi|325106180|ref|YP_004275834.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
           12145]
 gi|324975028|gb|ADY54012.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM
           12145]
          Length = 146

 Score = 40.3 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           + G +  +  DKGYGFI  + + E+   +F+H + +  A    + E   VT+        
Sbjct: 84  NTGVVTSFFSDKGYGFIKEDKTNEN---IFVHSNNLTEA----VKERDKVTFKKEMTPRG 136

Query: 63  GKYSAENLKLVP 74
             Y+A  ++ + 
Sbjct: 137 --YAAIEVRKIK 146


>gi|210608520|ref|ZP_03287896.1| hypothetical protein CLONEX_00075 [Clostridium nexile DSM 1787]
 gi|210153011|gb|EEA84017.1| hypothetical protein CLONEX_00075 [Clostridium nexile DSM 1787]
          Length = 441

 Score = 40.3 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           GYGFI  +      +DV++  S +   GL     G     D +  +   K  AE
Sbjct: 82  GYGFIRSDNYLPGENDVYVSPSQIRRFGLKT---G-----DIISGNTRIKTQAE 127


>gi|152970826|ref|YP_001335935.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
 gi|238895333|ref|YP_002920068.1| cold shock protein E [Klebsiella pneumoniae NTUH-K2044]
 gi|262041867|ref|ZP_06015051.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|330002098|ref|ZP_08304183.1| cold-shock DNA-binding domain protein [Klebsiella sp. MS 92-3]
 gi|150955675|gb|ABR77705.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
 gi|238547650|dbj|BAH64001.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
 gi|259040772|gb|EEW41859.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|328537467|gb|EGF63704.1| cold-shock DNA-binding domain protein [Klebsiella sp. MS 92-3]
          Length = 160

 Score = 40.3 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+G++ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGENRYFHV--IKVANPDLIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K++P+S
Sbjct: 54 NKG--LSAYAVKVIPES 68


>gi|290508923|ref|ZP_06548294.1| cold shock protein E [Klebsiella sp. 1_1_55]
 gi|289778317|gb|EFD86314.1| cold shock protein E [Klebsiella sp. 1_1_55]
          Length = 160

 Score = 40.3 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+G++ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGENRYFHV--IKVANPDLIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K++P+S
Sbjct: 54 NKG--LSAYAVKVIPES 68


>gi|16129517|ref|NP_416076.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. MG1655]
 gi|26249027|ref|NP_755067.1| cold shock-like protein cspF [Escherichia coli CFT073]
 gi|89108400|ref|AP_002180.1| cold shock protein [Escherichia coli str. K-12 substr. W3110]
 gi|170081226|ref|YP_001730546.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|193066948|ref|ZP_03047917.1| conserved domain protein [Escherichia coli E110019]
 gi|194436432|ref|ZP_03068533.1| conserved domain protein [Escherichia coli 101-1]
 gi|218551642|ref|YP_002385434.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
          35469]
 gi|218554120|ref|YP_002387033.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
 gi|218561569|ref|YP_002394482.1| cold shock protein; Qin prophage [Escherichia coli S88]
 gi|218699872|ref|YP_002407501.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
 gi|218705060|ref|YP_002412579.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
 gi|238900778|ref|YP_002926574.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
 gi|260855296|ref|YP_003229187.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368]
 gi|300899667|ref|ZP_07117898.1| cold-shock DNA-binding domain protein [Escherichia coli MS 198-1]
 gi|300903930|ref|ZP_07121825.1| cold-shock DNA-binding domain protein [Escherichia coli MS 84-1]
 gi|300919924|ref|ZP_07136386.1| cold-shock DNA-binding domain protein [Escherichia coli MS 115-1]
 gi|300925264|ref|ZP_07141159.1| cold-shock DNA-binding domain protein [Escherichia coli MS 182-1]
 gi|300938349|ref|ZP_07153103.1| cold-shock DNA-binding domain protein [Escherichia coli MS 21-1]
 gi|301306488|ref|ZP_07212554.1| cold-shock DNA-binding domain protein [Escherichia coli MS 124-1]
 gi|301326429|ref|ZP_07219781.1| cold-shock DNA-binding domain protein [Escherichia coli MS 78-1]
 gi|301647721|ref|ZP_07247514.1| cold-shock DNA-binding domain protein [Escherichia coli MS 146-1]
 gi|307138213|ref|ZP_07497569.1| putative cold shock protein [Escherichia coli H736]
 gi|307310876|ref|ZP_07590522.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|331642146|ref|ZP_08343281.1| major cold shock protein Cspa1 [Escherichia coli H736]
 gi|331680502|ref|ZP_08381161.1| major cold shock protein Cspa1 [Escherichia coli H591]
 gi|71154160|sp|P0A977|CSPF_ECOL6 RecName: Full=Cold shock-like protein CspF; Short=CSP-F
 gi|71154161|sp|P0A976|CSPF_ECOLI RecName: Full=Cold shock-like protein CspF; Short=CSP-F
 gi|26109434|gb|AAN81637.1|AE016765_39 Cold shock-like protein cspF [Escherichia coli CFT073]
 gi|1742553|dbj|BAA15257.1| cold shock protein [Escherichia coli str. K12 substr. W3110]
 gi|1787840|gb|AAC74631.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. MG1655]
 gi|2226342|gb|AAB61740.1| CspF [Escherichia coli str. K-12 substr. W3110]
 gi|169889061|gb|ACB02768.1| Qin prophage; cold shock protein [Escherichia coli str. K-12
          substr. DH10B]
 gi|192959538|gb|EDV89972.1| conserved domain protein [Escherichia coli E110019]
 gi|194424464|gb|EDX40450.1| conserved domain protein [Escherichia coli 101-1]
 gi|218359184|emb|CAQ91848.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC
          35469]
 gi|218360888|emb|CAQ98458.1| cold shock protein; Qin prophage [Escherichia coli IAI1]
 gi|218368338|emb|CAR06157.1| cold shock protein; Qin prophage [Escherichia coli S88]
 gi|218369858|emb|CAR17632.1| cold shock protein; Qin prophage [Escherichia coli IAI39]
 gi|218432157|emb|CAR13045.1| cold shock protein; Qin prophage [Escherichia coli UMN026]
 gi|238863369|gb|ACR65367.1| Qin prophage; cold shock protein [Escherichia coli BW2952]
 gi|257753945|dbj|BAI25447.1| predicted cold shock protein [Escherichia coli O26:H11 str.
          11368]
 gi|260449319|gb|ACX39741.1| cold-shock DNA-binding domain protein [Escherichia coli DH1]
 gi|300356792|gb|EFJ72662.1| cold-shock DNA-binding domain protein [Escherichia coli MS 198-1]
 gi|300404090|gb|EFJ87628.1| cold-shock DNA-binding domain protein [Escherichia coli MS 84-1]
 gi|300413045|gb|EFJ96355.1| cold-shock DNA-binding domain protein [Escherichia coli MS 115-1]
 gi|300418597|gb|EFK01908.1| cold-shock DNA-binding domain protein [Escherichia coli MS 182-1]
 gi|300456685|gb|EFK20178.1| cold-shock DNA-binding domain protein [Escherichia coli MS 21-1]
 gi|300838294|gb|EFK66054.1| cold-shock DNA-binding domain protein [Escherichia coli MS 124-1]
 gi|300846845|gb|EFK74605.1| cold-shock DNA-binding domain protein [Escherichia coli MS 78-1]
 gi|301074156|gb|EFK88962.1| cold-shock DNA-binding domain protein [Escherichia coli MS 146-1]
 gi|306909054|gb|EFN39550.1| cold-shock DNA-binding domain protein [Escherichia coli W]
 gi|312946161|gb|ADR26988.1| putative cold shock protein [Escherichia coli O83:H1 str. NRG
          857C]
 gi|315060858|gb|ADT75185.1| Qin prophage; cold shock protein [Escherichia coli W]
 gi|315136199|dbj|BAJ43358.1| Qin prophage; cold shock protein [Escherichia coli DH1]
 gi|315253260|gb|EFU33228.1| cold-shock DNA-binding domain protein [Escherichia coli MS 85-1]
 gi|320197746|gb|EFW72354.1| Cold shock protein CspF [Escherichia coli EC4100B]
 gi|320643976|gb|EFX13063.1| cold shock-like protein CspF [Escherichia coli O157:H- str.
          493-89]
 gi|320649405|gb|EFX17947.1| cold shock-like protein CspF [Escherichia coli O157:H- str. H
          2687]
 gi|320660404|gb|EFX27872.1| cold shock-like protein CspF [Escherichia coli O55:H7 str. USDA
          5905]
 gi|323156711|gb|EFZ42849.1| cold shock-like protein cspI [Escherichia coli EPECa14]
 gi|323169850|gb|EFZ55506.1| cold shock-like protein cspI [Escherichia coli LT-68]
 gi|323378571|gb|ADX50839.1| cold-shock DNA-binding domain protein [Escherichia coli KO11]
 gi|323942037|gb|EGB38215.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli E482]
 gi|323947933|gb|EGB43928.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli H120]
 gi|323973800|gb|EGB68974.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli TA007]
 gi|324112034|gb|EGC06012.1| cold-shock DNA-binding domain-containing protein [Escherichia
          fergusonii B253]
 gi|331038944|gb|EGI11164.1| major cold shock protein Cspa1 [Escherichia coli H736]
 gi|331071965|gb|EGI43301.1| major cold shock protein Cspa1 [Escherichia coli H591]
 gi|332343267|gb|AEE56601.1| cold shock-like protein CspI [Escherichia coli UMNK88]
          Length = 70

 Score = 40.3 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G G ITP   ++   DV LH SA+       +T G  V +  + N   G
Sbjct: 6  TGIVKTFDGKSGKGLITP---SDGRIDVQLHVSALNLRDAEEITTGLRVEFCRI-NGLRG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PSAANV 67


>gi|156743639|ref|YP_001433768.1| transcription termination factor Rho [Roseiflexus castenholzii DSM
           13941]
 gi|156234967|gb|ABU59750.1| transcription termination factor Rho [Roseiflexus castenholzii DSM
           13941]
          Length = 445

 Score = 40.3 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           GYGF+  E      DDV++ +S +   GL     G  V
Sbjct: 91  GYGFLRGERMLPGPDDVYVSQSQIRRFGLRT---GDRV 125


>gi|206578678|ref|YP_002237869.1| cold-shock DNA-binding domain protein [Klebsiella pneumoniae 342]
 gi|288934798|ref|YP_003438857.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
 gi|206567736|gb|ACI09512.1| cold-shock DNA-binding domain protein [Klebsiella pneumoniae 342]
 gi|288889507|gb|ADC57825.1| cold-shock DNA-binding domain protein [Klebsiella variicola
          At-22]
          Length = 160

 Score = 40.3 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+G++ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGENRYFHV--IKVANPDLIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K++P+S
Sbjct: 54 NKG--LSAYAVKVIPES 68


>gi|307825190|ref|ZP_07655410.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum
           SV96]
 gi|307733646|gb|EFO04503.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum
           SV96]
          Length = 180

 Score = 40.3 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
            G++    P+K +GFI      E G +++ HR++V  +G   L  G  + Y   + D  G
Sbjct: 118 TGTVSRMLPEKDHGFIE----AEDGHEIYFHRNSVTGSGFDALQVGDEIRY-VEETDDLG 172

Query: 64  KYSAEN 69
             ++  
Sbjct: 173 PQASIV 178


>gi|255691170|ref|ZP_05414845.1| cold shock protein [Bacteroides finegoldii DSM 17565]
 gi|260623073|gb|EEX45944.1| cold shock protein [Bacteroides finegoldii DSM 17565]
          Length = 148

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G ++++N  +G+GFI      +     F H +  A      + E  +VT+D  +     
Sbjct: 86  KGRVEFFNESRGFGFIKDLSGVDK---YFFHVNNAAP----GIAENDIVTFDLERGVKG- 137

Query: 64  KYSAENLKLVPK 75
             +A N+ L  +
Sbjct: 138 -MNAVNICLEKQ 148


>gi|322493897|emb|CBZ29188.1| hypothetical protein, unknown function [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1916

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           +G +  E +     D+F+H S ++  G     +G  V +  
Sbjct: 822 FGKLEREPAQLG--DIFVHHSCISMDGFRVFVQGTTVRFSV 860


>gi|320352876|ref|YP_004194215.1| Cold-shock protein DNA-binding protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320121378|gb|ADW16924.1| Cold-shock protein DNA-binding protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 180

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
           YGFI  +       DVF H +A+    + +L EG  V +   + D  
Sbjct: 127 YGFIVTDDKL----DVFFHANALKDVTINDLAEGDEVLFAMEEGDKG 169


>gi|253687854|ref|YP_003017044.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|251754432|gb|ACT12508.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum
          subsp. carotovorum PC1]
          Length = 160

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+G++ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGENRYFHV--IKVANPDLIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K++P+S
Sbjct: 54 NKG--LSAYAVKVLPES 68


>gi|170020091|ref|YP_001725045.1| cold-shock DNA-binding domain-containing protein [Escherichia
          coli ATCC 8739]
 gi|293405061|ref|ZP_06649053.1| cold shock-like protein cspF [Escherichia coli FVEC1412]
 gi|298380706|ref|ZP_06990305.1| cold shock-like protein cspF [Escherichia coli FVEC1302]
 gi|312969570|ref|ZP_07783753.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|169755019|gb|ACA77718.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC
          8739]
 gi|291427269|gb|EFF00296.1| cold shock-like protein cspF [Escherichia coli FVEC1412]
 gi|298278148|gb|EFI19662.1| cold shock-like protein cspF [Escherichia coli FVEC1302]
 gi|310337855|gb|EFQ02944.1| cold shock-like protein cspI [Escherichia coli 1827-70]
 gi|315619488|gb|EFV00016.1| cold shock-like protein cspI [Escherichia coli 3431]
 gi|323185904|gb|EFZ71261.1| cold shock-like protein cspI [Escherichia coli 1357]
 gi|323190391|gb|EFZ75667.1| cold shock-like protein cspI [Escherichia coli RN587/1]
 gi|325499886|gb|EGC97745.1| Qin prophage; cold shock protein [Escherichia fergusonii ECD227]
          Length = 66

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G G ITP   ++   DV LH SA+       +T G  V +  + N   G
Sbjct: 2  TGIVKTFDGKSGKGLITP---SDGRIDVQLHVSALNLRDAEEITTGLRVEFCRI-NGLRG 57

Query: 64 KYSAEN 69
            +A  
Sbjct: 58 PSAANV 63


>gi|256088411|ref|XP_002580331.1| hypothetical protein [Schistosoma mansoni]
 gi|238665887|emb|CAZ36570.1| expressed protein [Schistosoma mansoni]
          Length = 112

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDD-VFLHRSAVASAGLFNLTEGQLVTYD-YVQNDAN 62
          G I  +  DKG+GFI P+    +GDD +F+H   +   G +   EG +V Y   +    N
Sbjct: 34 GKIISFCRDKGHGFIKPD----NGDDCLFVHVFDI--DGEYVPIEGDVVEYRKMLIPPKN 87

Query: 63 GKYSAENLKLV 73
           KY A ++++V
Sbjct: 88 EKYQAVHVRIV 98


>gi|254787275|ref|YP_003074704.1| hypothetical protein TERTU_3357 [Teredinibacter turnerae T7901]
 gi|237685617|gb|ACR12881.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
          Length = 258

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 16/82 (19%)

Query: 1   MVHRGSIKWYNPDKGYGFIT-----PEGSTESGDDVFLHRSAVASAG-------LFNLTE 48
           + HRG + + N +KG+GF++          ESG  +F H S +   G          L  
Sbjct: 175 IRHRGVLDYVNEEKGFGFLSIRTGYQLTDIESG--IFCHISQLTEDGMGVSNDRFSALAS 232

Query: 49  GQLV-TYDYVQNDANGKYSAEN 69
              V  +D ++++  G + AEN
Sbjct: 233 NNAVIEFDKIKSERGG-FQAEN 253


>gi|188587465|ref|YP_001919010.1| transcription termination factor Rho [Natranaerobius thermophilus
          JW/NM-WN-LF]
 gi|179352152|gb|ACB86422.1| transcription termination factor Rho [Natranaerobius thermophilus
          JW/NM-WN-LF]
          Length = 414

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          GYGF+ P+G T   +D+++  S +   GL     G LV+
Sbjct: 61 GYGFLRPDGYTPGSNDIYISASQIKRFGLKT---GDLVS 96


>gi|326429250|gb|EGD74820.1| hypothetical protein PTSG_07053 [Salpingoeca sp. ATCC 50818]
          Length = 856

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSA----VASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
            ++G+GFI        G  +F H S+    V       L     V ++ V     G   A
Sbjct: 116 SERGFGFIK--SGRFPGQSLFFHVSSFNFHVGRDDRSLLH--MPVEFEIVDRGRRG-IGA 170

Query: 68  ENLKLVPKS 76
            N+ +V +S
Sbjct: 171 VNIDIVHRS 179



 Score = 37.2 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +K   P  G+GFIT     +   D+F+  S V   G   L     V ++       G 
Sbjct: 561 GWVKRLMPGSGFGFITSFPKLD---DIFMPFSNVV--GHCELDVNMWVEFEIT-PSPRGP 614

Query: 65  YSAENLKLVP 74
            +A   +  P
Sbjct: 615 VAARVCQADP 624


>gi|291617368|ref|YP_003520110.1| Hypothetical Protein PANA_1815 [Pantoea ananatis LMG 20103]
 gi|291152398|gb|ADD76982.1| Hypothetical Protein PANA_1815 [Pantoea ananatis LMG 20103]
 gi|327393809|dbj|BAK11231.1| putative cold-shock protein [Pantoea ananatis AJ13355]
          Length = 160

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-QDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K++P+S
Sbjct: 54 NKG--LSAFAVKVLPES 68


>gi|270263682|ref|ZP_06191951.1| cold-shock DNA-binding domain-containing protein [Serratia
          odorifera 4Rx13]
 gi|270042566|gb|EFA15661.1| cold-shock DNA-binding domain-containing protein [Serratia
          odorifera 4Rx13]
          Length = 163

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G I  +  DKG+GFIT     E+G++ + H   V +  L  + +   VT++   N 
Sbjct: 3  MMMNGKITTFFEDKGFGFIT----DENGENRYFHVIKVQNPEL--IKKNAAVTFEPTNNT 56

Query: 61 ANGKYSAENLKLVPK 75
                A  ++   K
Sbjct: 57 KGPSAYAVKVQAASK 71


>gi|157369425|ref|YP_001477414.1| cold-shock DNA-binding domain-containing protein [Serratia
          proteamaculans 568]
 gi|157321189|gb|ABV40286.1| cold-shock DNA-binding domain protein [Serratia proteamaculans
          568]
          Length = 163

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M+  G I  +  DKG+GFIT     E+G++ + H   V +  L  + +   VT++   N 
Sbjct: 3  MMMNGKITTFFEDKGFGFIT----DENGENRYFHVIKVQNPEL--IKKNAAVTFEPTNNT 56

Query: 61 ANGKYSAENLKLVPKS 76
               SA  +K++  S
Sbjct: 57 KG--PSAFAVKVLASS 70


>gi|305666897|ref|YP_003863184.1| cold shock protein DNA-binding protein [Maribacter sp. HTCC2170]
 gi|88709122|gb|EAR01356.1| cold shock protein, putative DNA-binding protein [Maribacter sp.
           HTCC2170]
          Length = 151

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           V  G + +Y+  KG+GFI      +     F H S +    +  + E   V+++  +   
Sbjct: 89  VRNGKVSFYDSSKGFGFIIDSVDQQK---YFTHVSGL----IDEIVENDTVSFELEKGMR 141

Query: 62  NGKYSAENLKLV 73
               +A  +K +
Sbjct: 142 G--MNAVRVKKI 151


>gi|307324672|ref|ZP_07603878.1| putative cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306889554|gb|EFN20534.1| putative cold-shock DNA-binding domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 74

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +   +++ ++ ++G+G +     T  G   F H S +   G   L+ GQ V  +
Sbjct: 1  MVTATVREWSDEEGWG-VLDSPETPGG--CFGHFSDIQVTGFRTLSPGQQVDLE 51


>gi|332972991|gb|EGK10931.1| cold-shock DNA-binding domain protein [Kingella kingae ATCC
          23330]
          Length = 280

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G IK +N +  +GFI     T     VF H  A+ S  +  +  G+ V    VQN+   
Sbjct: 7  KGKIKSWNAECAFGFIE----TTDKKQVFFHIDALQSPQIKPIV-GETVQLLAVQNEKGW 61

Query: 64 KYSAE 68
          K +A 
Sbjct: 62 KATAV 66


>gi|188533190|ref|YP_001906987.1| Putative cold-shock protein [Erwinia tasmaniensis Et1/99]
 gi|188028232|emb|CAO96090.1| Putative cold-shock protein [Erwinia tasmaniensis Et1/99]
          Length = 160

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
                SA  +K+ P+S
Sbjct: 54 SKG--LSAYAVKVAPES 68


>gi|297159817|gb|ADI09529.1| hypothetical protein SBI_06409 [Streptomyces bingchenggensis
          BCW-1]
          Length = 71

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 2  VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          +   +++ ++ ++G+G +  P+           H SAV + G  +L  GQ VT D
Sbjct: 1  MVTATVREWHDEEGWGVLDCPDTPGGCWG----HFSAVEAQGFRSLAPGQRVTLD 51


>gi|78189938|ref|YP_380276.1| cold shock protein [Chlorobium chlorochromatii CaD3]
 gi|78172137|gb|ABB29233.1| Cold shock protein [Chlorobium chlorochromatii CaD3]
          Length = 310

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           GYGFI    +      +F H S +      +L     V +   +ND  G   A+++ LV 
Sbjct: 251 GYGFIKFPPNN-----LFFHYSNLNGVDFNDLKVDDAVQFVIGKND-RGDEVAKDIVLVA 304

Query: 75  KSS 77
           + S
Sbjct: 305 EES 307


>gi|266621437|ref|ZP_06114372.1| transcription termination factor Rho [Clostridium hathewayi DSM
           13479]
 gi|288866877|gb|EFC99175.1| transcription termination factor Rho [Clostridium hathewayi DSM
           13479]
          Length = 570

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           G+GFI  E      +DV++  S +    +     G     D +Q     K +AE
Sbjct: 209 GFGFIRCENYLPGENDVYVAPSQIRRFNMKT---G-----DIIQGSRRVKTAAE 254


>gi|300857052|ref|YP_003782036.1| putative ribonuclease R [Clostridium ljungdahlii DSM 13528]
 gi|300437167|gb|ADK16934.1| predicted ribonuclease R [Clostridium ljungdahlii DSM 13528]
          Length = 712

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY-SAENLK 71
            KGYGF+ PE     G DVF+  S +  A       G  V     + +  GK    E ++
Sbjct: 76  QKGYGFVIPE---NEGADVFVPSSYLNGA-----MNGDKVVVKITKMEDKGKKCEGEIIR 127

Query: 72  LVPKS 76
           ++ ++
Sbjct: 128 VLERA 132


>gi|163847405|ref|YP_001635449.1| hypothetical protein Caur_1843 [Chloroflexus aurantiacus J-10-fl]
 gi|222525254|ref|YP_002569725.1| cold-shock DNA-binding domain-containing protein [Chloroflexus
          sp. Y-400-fl]
 gi|163668694|gb|ABY35060.1| protein of unknown function DUF1294 [Chloroflexus aurantiacus
          J-10-fl]
 gi|222449133|gb|ACM53399.1| cold-shock DNA-binding domain protein [Chloroflexus sp. Y-400-fl]
          Length = 190

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 21/78 (26%)

Query: 2  VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL-------VT 53
           H+G  + W   DKGYGFI    S    D VF H          +L + Q        VT
Sbjct: 4  RHKGKIVVW-KDDKGYGFIE---SANGRDRVFFHI--------RHLADRQRRPELNTSVT 51

Query: 54 YDYVQNDANGKYSAENLK 71
          Y    ND  G+  A +++
Sbjct: 52 YALG-NDDKGRVQAIDVR 68


>gi|259907746|ref|YP_002648102.1| cold-shock protein [Erwinia pyrifoliae Ep1/96]
 gi|224963368|emb|CAX54854.1| cold-shock protein [Erwinia pyrifoliae Ep1/96]
 gi|310764747|gb|ADP09697.1| cold-shock protein [Erwinia sp. Ejp617]
          Length = 160

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
                SA  +K+ P+S
Sbjct: 54 TKG--LSAYAVKVAPES 68


>gi|330877321|gb|EGH11470.1| hypothetical protein PSYMP_17475 [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 20

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 2  VHRGSIKWYNPDKGYGF 18
             G++KW+N +KG+GF
Sbjct: 4  RQTGTVKWFNDEKGFGF 20


>gi|145503922|ref|XP_001437933.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405094|emb|CAK70536.1| unnamed protein product [Paramecium tetraurelia]
          Length = 190

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43
            G +K+++ +K YGFI  +     G D+F++   +   G+
Sbjct: 105 TGYLKFFDENKNYGFIVMDS---DGSDIFVYADDLVKTGI 141


>gi|226364927|ref|YP_002782709.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226243416|dbj|BAH53764.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 949

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD---YVQND 60
            G+++ ++ ++G G I  + +       + H   VA +G+ +LT GQ VT++    V   
Sbjct: 878 TGTVRTWSDEEGCGVIDSDATPGGA---WTHARNVAGSGVHSLTPGQHVTFEPEKVVSGT 934

Query: 61  ANGKY-SAENLKLV 73
            +G +  A +++ V
Sbjct: 935 QDGYHYRALDVRKV 948


>gi|317053944|ref|YP_004117969.1| cold-shock DNA-binding domain-containing protein [Pantoea sp.
          At-9b]
 gi|316951939|gb|ADU71413.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b]
          Length = 160

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-QDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K+ P+S
Sbjct: 54 NKG--LSAYAVKVAPES 68


>gi|148657328|ref|YP_001277533.1| transcription termination factor Rho [Roseiflexus sp. RS-1]
 gi|148569438|gb|ABQ91583.1| transcription termination factor Rho [Roseiflexus sp. RS-1]
          Length = 444

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           GYGF+  E      +DV++ +S +   GL     G  V
Sbjct: 90  GYGFLRGERMLPGPNDVYVSQSQIRRFGLRT---GDRV 124


>gi|309789697|ref|ZP_07684277.1| transcription termination factor Rho [Oscillochloris trichoides
          DG6]
 gi|308228183|gb|EFO81831.1| transcription termination factor Rho [Oscillochloris trichoides
          DG6]
          Length = 417

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          G+GF+  +      DDV++ +S +   GL     G  +
Sbjct: 61 GFGFLRGDRMLPGSDDVYVSQSQIRRFGLRT---GDRI 95


>gi|333030414|ref|ZP_08458475.1| Cold-shock protein DNA-binding [Bacteroides coprosuis DSM 18011]
 gi|332741011|gb|EGJ71493.1| Cold-shock protein DNA-binding [Bacteroides coprosuis DSM 18011]
          Length = 144

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           G +K+YN D+G+GFI  + S E     F H S         +     VT+   ++   G 
Sbjct: 85  GHVKFYNEDRGFGFIKDKESVEQ---YFFHISNAPED----IERNDHVTFRL-EDSPRGL 136

Query: 65  YSAEN 69
            + E 
Sbjct: 137 NAVEV 141


>gi|145539193|ref|XP_001455291.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423090|emb|CAK87894.1| unnamed protein product [Paramecium tetraurelia]
          Length = 199

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43
            G +K+++ +K YGFI  +   + G D+F++   +A  G+
Sbjct: 114 TGYLKFFDENKNYGFIVMD---QDGSDLFVYADDLAKTGI 150


>gi|294788309|ref|ZP_06753552.1| membrane protein,putative [Simonsiella muelleri ATCC 29453]
 gi|294483740|gb|EFG31424.1| membrane protein,putative [Simonsiella muelleri ATCC 29453]
          Length = 223

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 7  IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
          +KW N ++G+GF+    + E  +D+F H + +      +  + + VT     +D   ++S
Sbjct: 24 VKW-NSERGFGFV---KTAEVANDIFFHVNTLVGKDEISPQQNESVTVYAKYDDDKKRWS 79

Query: 67 AENLK 71
          A  + 
Sbjct: 80 ATKIT 84


>gi|84623636|ref|YP_451008.1| hypothetical protein XOO_1979 [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|121632095|ref|YP_001001457.1| integral membrane protein [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|188576851|ref|YP_001913780.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188577043|ref|YP_001913972.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84367576|dbj|BAE68734.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
          MAFF 311018]
 gi|116247011|gb|ABJ89937.1| integral membrane protein [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|188521303|gb|ACD59248.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521495|gb|ACD59440.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 60

 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G ++ +N  KG GF TP G    GD  F+H SA A         G+++TY   ++ 
Sbjct: 1  MRYQGRLRDWNDHKGVGFATPNG---GGDRAFVHISAFAQQSRR-PRNGEIITYAIERDA 56

Query: 61 AN 62
            
Sbjct: 57 QK 58


>gi|119629320|gb|EAX08915.1| hCG1795283 [Homo sapiens]
          Length = 222

 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 30  DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
           D+ +H+S +   G  +  E + V +      A GK SAENL  + ++
Sbjct: 89  DIIVHQSKLHVEGFQSWKEDEAVDFTL---SAFGKKSAENLYALSEA 132


>gi|108999824|ref|XP_001114640.1| PREDICTED: protein lin-28 homolog A-like [Macaca mulatta]
          Length = 143

 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          H+S +   G  +L EG+ V + + ++   
Sbjct: 9  HQSKLHMEGFRSLKEGEAVEFTFKKSAKG 37


>gi|300697693|ref|YP_003748354.1| cold shock activator transcriptional regulator [Ralstonia
          solanacearum CFBP2957]
 gi|299074417|emb|CBJ53967.1| putative cold shock activator transcription regulator protein
          [Ralstonia solanacearum CFBP2957]
          Length = 68

 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          F+  S +  +G     EGQ V++D V    +G+  A N+K +
Sbjct: 28 FIRDSEIQLSGSQRFHEGQRVSFDVVMG-PDGELIAVNIKPI 68


>gi|304398673|ref|ZP_07380545.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
 gi|304353884|gb|EFM18259.1| cold-shock DNA-binding domain protein [Pantoea sp. aB]
          Length = 162

 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-EDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K+ P S
Sbjct: 54 NKG--LSAYAVKVAPTS 68


>gi|313239188|emb|CBY14146.1| unnamed protein product [Oikopleura dioica]
          Length = 180

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 5   GSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDAN 62
           G++ K  N    YGFI  +     G  +F H S VA+ G    L     V ++ + ++ N
Sbjct: 55  GTVEKMMNS---YGFI--DVLDSRGR-IFFHFSQVANGGNNEQLRVADEVEFEMIMDERN 108

Query: 63  GKYSA 67
           G+  A
Sbjct: 109 GRIVA 113


>gi|293343215|ref|XP_002725422.1| PREDICTED: Y box binding protein 1-like [Rattus norvegicus]
 gi|293355088|ref|XP_002728620.1| PREDICTED: Y box binding protein 1-like [Rattus norvegicus]
          Length = 101

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDAN 62
          +N   G G I      ++ +DVF+H++A+        L ++ + + V +D+V+ + +
Sbjct: 6  FNVWNGCGLI---NRNDTKEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEKD 59


>gi|331652936|ref|ZP_08353941.1| conserved domain protein [Escherichia coli M718]
 gi|331049034|gb|EGI21106.1| conserved domain protein [Escherichia coli M718]
          Length = 70

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G G ITP   ++   DV LH SA+       +T G  V +  + N   G
Sbjct: 6  TGIVKTFDGKSGKGLITP---SDGRIDVQLHVSALNLRDAEEITTGLRVEFCRI-NGLRG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PSTANV 67


>gi|288553915|ref|YP_003425850.1| hypothetical protein BpOF4_04470 [Bacillus pseudofirmus OF4]
 gi|288545075|gb|ADC48958.1| hypothetical protein BpOF4_04470 [Bacillus pseudofirmus OF4]
          Length = 95

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 11/56 (19%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
          W+N  +GYG+           DVF+HR +V S        G  VTY+  +     +
Sbjct: 44 WFNTARGYGYTE--------KDVFIHRDSVISG---EPRPGAAVTYELKETRKGKR 88


>gi|308187834|ref|YP_003931965.1| cold-shock protein [Pantoea vagans C9-1]
 gi|308058344|gb|ADO10516.1| putative cold-shock protein [Pantoea vagans C9-1]
          Length = 162

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-EDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K+ P S
Sbjct: 54 NKG--LSAYAVKVAPTS 68


>gi|169634167|ref|YP_001707903.1| putative cold shock protein [Acinetobacter baumannii SDF]
 gi|169152959|emb|CAP02005.1| putative cold shock protein [Acinetobacter baumannii]
          Length = 97

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 10/74 (13%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61
          + G IK YN DKG+ FI+         D+F H S   AS G       + V +  +  D 
Sbjct: 6  YTGRIKQYNADKGFSFISTTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56

Query: 62 NGKYSAENLKLVPK 75
           GK+ A  ++ +  
Sbjct: 57 RGKFKAIKIERIDP 70


>gi|330948979|gb|EGH49239.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 36

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 37 AVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          A+ S G  +L EGQ VT+   +        AE +++
Sbjct: 2  AIQSDGFKSLKEGQTVTFVAAKGQKG--MQAEEVQV 35


>gi|145542648|ref|XP_001457011.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424825|emb|CAK89614.1| unnamed protein product [Paramecium tetraurelia]
          Length = 190

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43
           G +K+++ +K YGFI  +     G D+F++   +A  G+
Sbjct: 106 GFLKFFDENKNYGFIVMDS---DGSDIFVYADDLAKTGI 141


>gi|116751463|ref|YP_848150.1| cold-shock protein, DNA-binding [Syntrophobacter fumaroxidans MPOB]
 gi|116700527|gb|ABK19715.1| Cold-shock protein, DNA-binding [Syntrophobacter fumaroxidans MPOB]
          Length = 176

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
            ++GYGF+T    T  G +V+ H +A+ +    +L  G  V++   +    G  ++  
Sbjct: 121 SEEGYGFLT----TPEGREVYFHENALLNGKFKDLAVGTPVSF-VEREGEKGSQASSV 173


>gi|255073363|ref|XP_002500356.1| predicted protein [Micromonas sp. RCC299]
 gi|226515619|gb|ACO61614.1| predicted protein [Micromonas sp. RCC299]
          Length = 736

 Score = 38.8 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 14/80 (17%)

Query: 5   GSIKWYNPDKGYGFITPEG-------------STESGDDVFLHRSAVASAGLFNLTEGQL 51
           G + W+ P +G G I P+G                +  +V + R A+A  G   L  G+ 
Sbjct: 190 GRVAWWKPARGVGAIVPDGVVGARNEGAGGGEEEFATKEVSVTRDALAG-GADTLAPGEG 248

Query: 52  VTYDYVQNDANGKYSAENLK 71
           V +D   +  + +  A N+ 
Sbjct: 249 VWFDLESSGPSDRSVAVNVT 268


>gi|186476768|ref|YP_001858238.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phymatum
           STM815]
 gi|226702629|sp|B2JDN2|PNP_BURP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|184193227|gb|ACC71192.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phymatum
           STM815]
          Length = 712

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYSAENLK 71
           +G I    +   G D  LH S +A+  + +    L EGQ V    +Q D  G+       
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIANERIKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKA 698

Query: 72  LVPKSSN 78
           L+ +++ 
Sbjct: 699 LLNEAAQ 705


>gi|157145107|ref|YP_001452426.1| hypothetical protein CKO_00840 [Citrobacter koseri ATCC BAA-895]
 gi|157082312|gb|ABV11990.1| hypothetical protein CKO_00840 [Citrobacter koseri ATCC BAA-895]
          Length = 157

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 9/68 (13%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N+     SA 
Sbjct: 8  WF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTNNKG--LSAY 58

Query: 69 NLKLVPKS 76
           +K++P+S
Sbjct: 59 AVKVIPES 66


>gi|109020247|ref|XP_001090953.1| PREDICTED: protein lin-28 homolog A-like, partial [Macaca
          mulatta]
          Length = 81

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 5  GSIKWYNPDKGYGFITPEGST----ESGDDVFLHR 35
          G  KW+N   G+GF++         +   DVF+H+
Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQ 76


>gi|290243061|ref|YP_003494731.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          K90mix]
 gi|288945566|gb|ADC73264.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp.
          K90mix]
          Length = 188

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G+IKWY+ +KGYG++       +G + F    A    G    + G  V++     D  G
Sbjct: 2  KGTIKWYSDEKGYGYVV----DPAGKERF--FGAKHVQGTSTPSSGDSVSFKPGL-DRKG 54

Query: 64 KYSAENLKL 72
             A ++++
Sbjct: 55 APIARSIQI 63


>gi|157873209|ref|XP_001685118.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128189|emb|CAJ08320.1| hypothetical protein LMJF_31_1330 [Leishmania major strain
           Friedlin]
          Length = 1905

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 17  GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           G +  E +     D+F+H S ++  G     +G  V +  
Sbjct: 819 GTLEREPAQLG--DIFVHHSCISMNGFRVFVQGTAVRFSV 856


>gi|328886068|emb|CCA59307.1| hypothetical protein SVEN_6021 [Streptomyces venezuelae ATCC
          10712]
          Length = 68

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDAN 62
          +G +  +N   GYGF+ P GS E      +  SA    G    L+EGQ V++  V  D  
Sbjct: 6  KGFVHSFNRAGGYGFVVPLGSEEQ-----IWFSAEDIEGEDRALSEGQQVSFVLVLGD-- 58

Query: 63 GKYSAENLK 71
          G++ A+ L+
Sbjct: 59 GRFEAKELR 67


>gi|294876504|ref|XP_002767689.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983]
 gi|239869477|gb|EER00407.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983]
          Length = 546

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 21/95 (22%)

Query: 5   GSIKWYNPDKGYGFI----------TPEGSTESGDDVFLHRSAVASAGLF---NLTEGQL 51
           G +  ++  +G+GFI          + +   E  + +F+HR  +A + L    NL  G  
Sbjct: 125 GRVAKFDQARGFGFIYRSYEDSPSPSQKHHFEDDEVLFVHRKGIAGSTLDKPLNLDPGAP 184

Query: 52  VTYDYVQNDA--------NGKYSAENLKLVPKSSN 78
           V Y                 +  A ++ ++   ++
Sbjct: 185 VRYLVSSERESAAAASSTKTRDQAVDVSMLSDPTD 219


>gi|212711744|ref|ZP_03319872.1| hypothetical protein PROVALCAL_02819 [Providencia alcalifaciens
          DSM 30120]
 gi|212685846|gb|EEB45374.1| hypothetical protein PROVALCAL_02819 [Providencia alcalifaciens
          DSM 30120]
          Length = 160

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          W+  DKG+GF+      E+GD+ + H   +  A    + +G  VT++   N+     SA 
Sbjct: 8  WF-EDKGFGFL----KDENGDNRYFHV--IKVANPDLIKKGAEVTFEPTTNNKG--LSAF 58

Query: 69 NLKLVPKS 76
           +K++P+S
Sbjct: 59 AVKVIPES 66


>gi|17646566|gb|AAL40978.1|AF447860_7 Rnr-like protein [Methylococcus capsulatus]
          Length = 613

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
          G+GF+ P+   +   D+F     ++   +  L     V       D  G+  A  ++++ 
Sbjct: 34 GFGFLHPD---DGSADLF-----ISPKDMRALIHDDRVVVSVRGIDRRGRREAAVVQVLE 85

Query: 75 KSS 77
          +++
Sbjct: 86 RNT 88


>gi|53803948|ref|YP_114408.1| ribonuclease R [Methylococcus capsulatus str. Bath]
 gi|53757709|gb|AAU92000.1| ribonuclease R [Methylococcus capsulatus str. Bath]
          Length = 755

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           G+GF+ P+   +   D+F     ++   +  L     V       D  G+  A  ++++ 
Sbjct: 110 GFGFLHPD---DGSADLF-----ISPKDMRALIHDDRVVVSVRGIDRRGRREAAVVQVLE 161

Query: 75  KSS 77
           +++
Sbjct: 162 RNT 164


>gi|241700824|ref|XP_002411901.1| Y box binding protein, putative [Ixodes scapularis]
 gi|215504841|gb|EEC14335.1| Y box binding protein, putative [Ixodes scapularis]
          Length = 47

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 29 DDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSA 67
          +D+F+H++A+           + EG+ V +D    +  G+ + 
Sbjct: 5  EDIFVHQTAITRNHPQKLTRTVYEGETVEFDVAVGE-KGREAP 46


>gi|145480979|ref|XP_001426512.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393587|emb|CAK59114.1| unnamed protein product [Paramecium tetraurelia]
          Length = 190

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43
           G +K+++ +K YGFI  +     G D+F++   +   G+
Sbjct: 106 GFLKFFDENKNYGFIVMDS---DGSDIFVYADDLTKTGI 141


>gi|261344628|ref|ZP_05972272.1| putative cold-shock protein [Providencia rustigianii DSM 4541]
 gi|282567544|gb|EFB73079.1| putative cold-shock protein [Providencia rustigianii DSM 4541]
          Length = 160

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          W+  +KG+GFI      E+GD+ + H   +  +    + +   VT++   N      SA 
Sbjct: 8  WF-EEKGFGFI----KDENGDNRYFHV--IKVSNPDLIKKDAAVTFEPTTNTKG--LSAY 58

Query: 69 NLKLVPKS 76
           +K++P+S
Sbjct: 59 AVKVIPES 66


>gi|283786462|ref|YP_003366327.1| cold-shock protein [Citrobacter rodentium ICC168]
 gi|282949916|emb|CBG89541.1| putative cold-shock protein [Citrobacter rodentium ICC168]
          Length = 160

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTAN 53

Query: 60 DANGKYSAENLKLVPKS 76
                SA  +K++P S
Sbjct: 54 SKG--LSAYAVKVIPDS 68


>gi|294952847|ref|XP_002787479.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983]
 gi|239902481|gb|EER19275.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983]
          Length = 740

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 21/95 (22%)

Query: 5   GSIKWYNPDKGYGFI----------TPEGSTESGDDVFLHRSAVASAGLF---NLTEGQL 51
           G +  ++  +G+GFI          + +   E  + +F+HR  +A + L    NL  G  
Sbjct: 320 GRVAKFDQARGFGFIYRSYEDSPSPSQKHHFEDDEVLFVHRKGIAGSTLDKPLNLDPGAP 379

Query: 52  VTYDYVQNDA--------NGKYSAENLKLVPKSSN 78
           V Y                 +  A ++ ++   ++
Sbjct: 380 VRYLVSSERESAAAVSSTKTRDQAVDVSMLSDPTD 414


>gi|297813029|ref|XP_002874398.1| hypothetical protein ARALYDRAFT_351768 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297320235|gb|EFH50657.1| hypothetical protein ARALYDRAFT_351768 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 162

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          SGDD+F+H+S ++S    +L   + V +    ++A+   + E 
Sbjct: 47 SGDDLFVHQS-ISSEKFRSLAVDEAVEFKVEVDNASRLKTVEV 88


>gi|297790436|ref|XP_002863109.1| hypothetical protein ARALYDRAFT_359133 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297846758|ref|XP_002891260.1| hypothetical protein ARALYDRAFT_336732 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297308931|gb|EFH39368.1| hypothetical protein ARALYDRAFT_359133 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297337102|gb|EFH67519.1| hypothetical protein ARALYDRAFT_336732 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 162

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          SGDD+F+H+S ++S    +L   + V +    ++A+   + E 
Sbjct: 47 SGDDLFVHQS-ISSEKFRSLAVDEAVEFKVEVDNASRLKTVEV 88


>gi|91202775|emb|CAJ72414.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 176

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66
           P++GYGFIT    +  G +++ H+++V +     L +G  V +   +    G  +
Sbjct: 121 PEEGYGFIT----SADGREIYFHKNSVLNHDFARLEKGMEVRFS-EELGEKGPQA 170


>gi|197301350|ref|ZP_03166431.1| hypothetical protein RUMLAC_00077 [Ruminococcus lactaris ATCC
           29176]
 gi|197299507|gb|EDY34026.1| hypothetical protein RUMLAC_00077 [Ruminococcus lactaris ATCC
           29176]
          Length = 449

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGFI  +       DV++  S +   GL  
Sbjct: 90  GYGFIRSDNYLPGEQDVYVAPSQIRRFGLKT 120


>gi|145589452|ref|YP_001156049.1| ribonuclease R [Polynucleobacter necessarius subsp. asymbioticus
          QLW-P1DMWA-1]
 gi|145047858|gb|ABP34485.1| RNAse R [Polynucleobacter necessarius subsp. asymbioticus
          QLW-P1DMWA-1]
          Length = 795

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          G+GF+ P+   + G+D+F   S    +    +  G  V    +  D  G+   + +++V
Sbjct: 24 GFGFVIPD---DGGEDIF--LSEREMS---RVMHGDRVNVRVLGTDRRGRPEGQIVEVV 74


>gi|257094012|ref|YP_003167653.1| cold-shock DNA-binding domain-containing protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046536|gb|ACV35724.1| cold-shock DNA-binding domain protein [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 855

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY--DYVQNDAN 62
          GS+  Y+   GYG+I P+      +   +HR ++   GL  L+ G  V +  + V     
Sbjct: 8  GSVDQYDDRMGYGYIKPDEPGSEEERFLVHRRSLRIPGLP-LSRGDRVIFKLEVV---PR 63

Query: 63 GKYSAEN 69
          G  +A+ 
Sbjct: 64 GLLAADV 70


>gi|159899894|ref|YP_001546141.1| transcription termination factor Rho [Herpetosiphon aurantiacus
          ATCC 23779]
 gi|159892933|gb|ABX06013.1| transcription termination factor Rho [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 416

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G+GF+  +      DDV++ ++ +   GL     G  ++
Sbjct: 62 GFGFLRSDRMLPGPDDVYVSQTQIRRFGLRT---GDRIS 97


>gi|298246241|ref|ZP_06970047.1| transcription termination factor Rho [Ktedonobacter racemifer DSM
          44963]
 gi|297553722|gb|EFH87587.1| transcription termination factor Rho [Ktedonobacter racemifer DSM
          44963]
          Length = 422

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G+GF+  E       DV++ +S +   GL     G +V+
Sbjct: 61 GFGFLRQERFLPGNMDVYVSQSQIRRFGLRT---GDMVS 96


>gi|253575487|ref|ZP_04852824.1| ribonuclease R [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845134|gb|EES73145.1| ribonuclease R [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 731

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           +  ++ +GF+ P+    +  D+F     +   G     +G+ V  + V+    G+ +A 
Sbjct: 144 FQNNESFGFVIPDDKRIN-KDLF-----IPREGFGAAVDGEKVVAEIVE-YPEGRSAAV 195


>gi|150005116|ref|YP_001299860.1| cold shock protein, putative DNA-binding protein [Bacteroides
           vulgatus ATCC 8482]
 gi|254883251|ref|ZP_05255961.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294778926|ref|ZP_06744342.1| cold-shock DNA-binding domain protein [Bacteroides vulgatus PC510]
 gi|319642626|ref|ZP_07997272.1| cold shock protein [Bacteroides sp. 3_1_40A]
 gi|149933540|gb|ABR40238.1| cold shock protein, putative DNA-binding protein [Bacteroides
           vulgatus ATCC 8482]
 gi|254836044|gb|EET16353.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294447235|gb|EFG15819.1| cold-shock DNA-binding domain protein [Bacteroides vulgatus PC510]
 gi|317385714|gb|EFV66647.1| cold shock protein [Bacteroides sp. 3_1_40A]
          Length = 148

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           +VH G I+ +N  KGYGF+    + E     F H S +    + N+ E  +VT++  +  
Sbjct: 84  LVHEGRIEHFNVSKGYGFVKDLKNAEK---YFFHISGL----IDNIIENNIVTFELEKGS 136

Query: 61  ANGKYSAENLKL 72
                +A  +KL
Sbjct: 137 RG--MNAVKIKL 146


>gi|297788951|ref|XP_002862499.1| hypothetical protein ARALYDRAFT_359579 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297308054|gb|EFH38757.1| hypothetical protein ARALYDRAFT_359579 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 162

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          SGDD+F+H+S ++S    +LT  + V +    ++A+   + E 
Sbjct: 47 SGDDLFVHQS-ISSEKFRSLTVDEAVEFKVEVDNASRLKTVEV 88


>gi|297815126|ref|XP_002875446.1| hypothetical protein ARALYDRAFT_347204 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297321284|gb|EFH51705.1| hypothetical protein ARALYDRAFT_347204 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 162

 Score = 37.6 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          SGDD+F+H+S ++S    +L   + V +    ++A+   + E 
Sbjct: 47 SGDDLFVHQS-ISSEKFRSLAVDEAVEFKVEVDNASRLKTVEV 88


>gi|293392427|ref|ZP_06636749.1| cold-shock DNA-binding domain protein [Serratia odorifera DSM
          4582]
 gi|291425081|gb|EFE98288.1| cold-shock DNA-binding domain protein [Serratia odorifera DSM
          4582]
          Length = 163

 Score = 37.6 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M   G I  +  DKG+GFIT     E+G++ + H   V +  L  + +   VT++   N+
Sbjct: 3  MTMNGKITTFFEDKGFGFIT----DENGENRYFHVIKVQNPEL--IKKNAAVTFEPT-NN 55

Query: 61 ANGKYSAENLKLVPKS 76
          A G  SA  +K++  S
Sbjct: 56 AKGP-SAFAVKVLAPS 70


>gi|297838765|ref|XP_002887264.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333105|gb|EFH63523.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 153

 Score = 37.6 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          SGDD+F+H+S ++S    +LT  + V +    ++A+   + E 
Sbjct: 47 SGDDLFVHQS-ISSEKFRSLTVDEAVEFKVEVDNASRLKTVEV 88


>gi|327540621|gb|EGF27195.1| cold shock protein scoF [Rhodopirellula baltica WH47]
          Length = 41

 Score = 37.6 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          F H S+V      +L EGQ VT++  + +      AEN+++
Sbjct: 2  FFHSSSVEGVNFDDLREGQQVTFNEARGEKG--PCAENVQV 40


>gi|288941319|ref|YP_003443559.1| ribonuclease R [Allochromatium vinosum DSM 180]
 gi|288896691|gb|ADC62527.1| ribonuclease R [Allochromatium vinosum DSM 180]
          Length = 806

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           G+GF+ P+   E GDD++     +    +  L  G  V       D  G+     ++++ 
Sbjct: 105 GFGFVRPD---EGGDDLY-----LYPKEMRALFHGDRVVVRVAGRDRRGRLEGAVVEILE 156

Query: 75  KSS 77
           +++
Sbjct: 157 RNT 159


>gi|212694509|ref|ZP_03302637.1| hypothetical protein BACDOR_04037 [Bacteroides dorei DSM 17855]
 gi|237711155|ref|ZP_04541636.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237727519|ref|ZP_04558000.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265750744|ref|ZP_06086807.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212663010|gb|EEB23584.1| hypothetical protein BACDOR_04037 [Bacteroides dorei DSM 17855]
 gi|229434375|gb|EEO44452.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229454999|gb|EEO60720.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263237640|gb|EEZ23090.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 148

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 1   MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           +VH G I+ +N  KGYGF+    + E     F H S +    + N+ E  +VT++  +  
Sbjct: 84  LVHEGRIEHFNVSKGYGFVKDLKNAEK---YFFHISGL----IDNIIENNIVTFELEKGS 136

Query: 61  ANGKYSAENLKL 72
                +A  +KL
Sbjct: 137 RG--MNAVKIKL 146


>gi|153955985|ref|YP_001396750.1| ribonuclease R [Clostridium kluyveri DSM 555]
 gi|219856326|ref|YP_002473448.1| hypothetical protein CKR_2983 [Clostridium kluyveri NBRC 12016]
 gi|146348843|gb|EDK35379.1| Rnr [Clostridium kluyveri DSM 555]
 gi|219570050|dbj|BAH08034.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 709

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV-QNDANGKYSAENLK 71
            KGYGF+ P    + G D+F+  SA+  A       G  V      Q +   K   E ++
Sbjct: 76  QKGYGFVIP---YDEGKDIFVPSSALNGA-----MNGDRVVVKITKQANTEKKCEGEIIR 127

Query: 72  LVPKSSN 78
           ++ ++++
Sbjct: 128 VLERANS 134


>gi|260072563|gb|ACX30463.1| hypothetical protein SUP05_FGYC13F180027 [uncultured SUP05
          cluster bacterium]
          Length = 107

 Score = 37.6 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +  +   KGYGFIT +     G+  F+H+  + +     L     V ++   +D   
Sbjct: 6  KGIVAQF-GTKGYGFITGD----DGEKYFVHQKNIYNK--ARLKADTRVVFNAENSDKG- 57

Query: 64 KYSAENLKL 72
             A ++KL
Sbjct: 58 -LVAVDVKL 65


>gi|291563702|emb|CBL42518.1| RNAse R [butyrate-producing bacterium SS3/4]
          Length = 776

 Score = 37.6 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 14  KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
           +G+GF+T EG  +   D+F     +      +  +G  V     +N   G+  A  LK++
Sbjct: 82  RGFGFVTIEGRED---DLF-----IPPDDTGDAMDGDTVQVVINENGRGGRTEARVLKVL 133

Query: 74  PKSSN 78
             ++ 
Sbjct: 134 KHANE 138


>gi|297800356|ref|XP_002868062.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297838153|ref|XP_002886958.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297845442|ref|XP_002890602.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313898|gb|EFH44321.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332799|gb|EFH63217.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336444|gb|EFH66861.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 142

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          SGDD+F+H+S ++S    +LT  + V +    ++A+   + E 
Sbjct: 47 SGDDLFVHQS-ISSEKFRSLTVDEAVEFKVEVDNASRLKTVEV 88


>gi|291550089|emb|CBL26351.1| transcription termination factor Rho [Ruminococcus torques L2-14]
          Length = 446

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGFI  +       DV++  S +   GL  
Sbjct: 87  GYGFIRSDNYLPGDGDVYVAPSQIRRFGLKT 117


>gi|281336058|gb|ADA62607.1| hypothetical protein SAP024A_042 [Staphylococcus epidermidis]
 gi|319400536|gb|EFV88768.1| hypothetical protein GSEF_1339 [Staphylococcus epidermidis
          FRI909]
          Length = 43

 Score = 37.6 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 39 ASAGLFNLTEGQLVTYDYVQNDAN 62
          A  G  +L EGQ V +D V+    
Sbjct: 20 AGEGYKSLEEGQNVDFDIVEGQRG 43


>gi|328953610|ref|YP_004370944.1| Cold-shock protein DNA-binding protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453934|gb|AEB09763.1| Cold-shock protein DNA-binding protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 1568

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS----AGLFNLTEGQL--VTYDYV 57
           +G I  +  D+ YGF+        GDD F HRSA+        +  L  G+   V +D  
Sbjct: 363 QGYIYNFKRDRNYGFLE----GIDGDDYFFHRSAILDNELLDKVLYLNPGERIPVIFDVA 418

Query: 58  QNDANG 63
           Q     
Sbjct: 419 QGIKGP 424


>gi|297834998|ref|XP_002885381.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297331221|gb|EFH61640.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 132

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          SGDD+F+H+S + S    +L   + V +    ++A
Sbjct: 15 SGDDLFVHQS-IRSEKFRSLAVDESVEFKVEVDNA 48


>gi|297836626|ref|XP_002886195.1| hypothetical protein ARALYDRAFT_900266 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297332035|gb|EFH62454.1| hypothetical protein ARALYDRAFT_900266 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 97

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          SGDD+F+H+S ++S    +L   + V +    ++A+   + E 
Sbjct: 47 SGDDLFVHQS-ISSEKFRSLAVDEAVEFKVEVDNASRLKTVEV 88


>gi|288550026|ref|ZP_05969023.2| putative cold-shock protein [Enterobacter cancerogenus ATCC
          35316]
 gi|288316460|gb|EFC55398.1| putative cold-shock protein [Enterobacter cancerogenus ATCC
          35316]
          Length = 178

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 9/68 (13%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N+     SA 
Sbjct: 29 WF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTNNKG--LSAY 79

Query: 69 NLKLVPKS 76
           +K++P+S
Sbjct: 80 AVKVIPES 87


>gi|269926445|ref|YP_003323068.1| transcription termination factor Rho [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790105|gb|ACZ42246.1| transcription termination factor Rho [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 642

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           G+GF+  E    S DDV++ +S +   GL     G  V
Sbjct: 288 GFGFLRQERYLPSPDDVYVSQSQIRRFGLRT---GDHV 322


>gi|156972839|ref|YP_001443746.1| cold shock proteins [Vibrio harveyi ATCC BAA-1116]
 gi|156524433|gb|ABU69519.1| hypothetical protein VIBHAR_00516 [Vibrio harveyi ATCC BAA-1116]
          Length = 45

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
          H  ++ S     L+E Q V++   Q +    Y A N+KL
Sbjct: 8  HFKSIVSECFKKLSEFQKVSFVVEQGNKG--YQAGNVKL 44


>gi|238059964|ref|ZP_04604673.1| hypothetical protein MCAG_00930 [Micromonospora sp. ATCC 39149]
 gi|237881775|gb|EEP70603.1| hypothetical protein MCAG_00930 [Micromonospora sp. ATCC 39149]
          Length = 116

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          G ++ ++ D+G+G I            ++H SA+A  G  +L  GQ V
Sbjct: 12 GVVREFHVDEGWGVIDGPAVPGG---CWVHFSAIAMGGFRHLAAGQFV 56


>gi|255030537|ref|ZP_05302488.1| hypothetical protein LmonL_18126 [Listeria monocytogenes LO28]
          Length = 40

 Score = 37.6 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 5/13 (38%), Positives = 11/13 (84%)

Query: 2  VHRGSIKWYNPDK 14
          + +G++KW+N +K
Sbjct: 1  MEQGTVKWFNAEK 13


>gi|326563498|gb|EGE13761.1| ribonuclease R [Moraxella catarrhalis 103P14B1]
 gi|326573807|gb|EGE23764.1| ribonuclease R [Moraxella catarrhalis 101P30B1]
          Length = 770

 Score = 37.2 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 14  KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
           KG+GF+      +   D+FLH        +  + +G  V  + V  +  GK  A  ++++
Sbjct: 106 KGFGFVI----LDDMPDLFLHEKQ-----MRLVFDGDTV--EAVATEYRGKTEARIIQVI 154

Query: 74  PKSS 77
            +S 
Sbjct: 155 KQSQ 158


>gi|296113667|ref|YP_003627605.1| ribonuclease R [Moraxella catarrhalis RH4]
 gi|295921361|gb|ADG61712.1| ribonuclease R [Moraxella catarrhalis RH4]
 gi|326562411|gb|EGE12730.1| ribonuclease R [Moraxella catarrhalis 7169]
 gi|326562780|gb|EGE13075.1| ribonuclease R [Moraxella catarrhalis 46P47B1]
 gi|326563184|gb|EGE13452.1| ribonuclease R [Moraxella catarrhalis 12P80B1]
 gi|326569119|gb|EGE19181.1| ribonuclease R [Moraxella catarrhalis BC1]
 gi|326570605|gb|EGE20641.1| ribonuclease R [Moraxella catarrhalis BC7]
 gi|326571312|gb|EGE21329.1| ribonuclease R [Moraxella catarrhalis BC8]
 gi|326572993|gb|EGE22972.1| ribonuclease R [Moraxella catarrhalis CO72]
 gi|326574769|gb|EGE24703.1| ribonuclease R [Moraxella catarrhalis O35E]
          Length = 770

 Score = 37.2 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 14  KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
           KG+GF+      +   D+FLH        +  + +G  V  + V  +  GK  A  ++++
Sbjct: 106 KGFGFVI----LDDMPDLFLHEKQ-----MRLVFDGDTV--EAVATEYRGKTEARIIQVI 154

Query: 74  PKSS 77
            +S 
Sbjct: 155 KQSQ 158


>gi|297844054|ref|XP_002889908.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335750|gb|EFH66167.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 120

 Score = 37.2 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          SGDD+F+H+S ++S    +LT  + V +    ++A+   + E 
Sbjct: 26 SGDDLFVHQS-ISSEKFRSLTVDEAVEFKVEVDNASRLKTVEV 67


>gi|313895876|ref|ZP_07829430.1| ribonuclease R [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975301|gb|EFR40762.1| ribonuclease R [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 907

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 14  KGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           KG+GFI P+   TE   DVF+  SA+A+A       G  V      ++  G+
Sbjct: 83  KGFGFIIPDVRDTEEETDVFVPGSALATA-----MHGDRVVARVTPSEQPGR 129


>gi|257461355|ref|ZP_05626451.1| cold-shock DNA-binding domain protein [Campylobacter gracilis
          RM3268]
 gi|257441078|gb|EEV16225.1| cold-shock DNA-binding domain protein [Campylobacter gracilis
          RM3268]
          Length = 260

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
          GS+K +  DKG+GFIT     + G + F H++ + +A + +   G  V +
Sbjct: 7  GSVKKFFLDKGFGFIT----DDDGVEYFFHKNDILNAKIAS---GDFVLF 49


>gi|255072331|ref|XP_002499840.1| cold-shock protein [Micromonas sp. RCC299]
 gi|226515102|gb|ACO61098.1| cold-shock protein [Micromonas sp. RCC299]
          Length = 1007

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 16  YGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQ-------NDANGKYSA 67
           +GF+     + +G D+F H S V    G+ +L     V +   +        D +GK +A
Sbjct: 177 FGFVR--TLSRNGPDLFFHASEVLERNGIDDLRVNDEVKFVVREAVPGAGPRDKDGKANA 234

Query: 68  ENLKLVPKS 76
             ++ + + 
Sbjct: 235 LMVQRLSEE 243


>gi|322420009|ref|YP_004199232.1| ribonuclease R [Geobacter sp. M18]
 gi|320126396|gb|ADW13956.1| ribonuclease R [Geobacter sp. M18]
          Length = 737

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 14/64 (21%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE---GQLVTYDYVQNDANGKYSAENLK 71
           GYGF+ PE   + G+D+F+            L+E   G +V    V    +GK       
Sbjct: 77  GYGFVMPE---DGGEDLFVPA--------RYLSEYMNGDVVEAQVVSTRRDGKREGRVTT 125

Query: 72  LVPK 75
           L+ +
Sbjct: 126 LIKR 129


>gi|294886195|ref|XP_002771604.1| protein phosphatase 2C ABI2, putative [Perkinsus marinus ATCC
           50983]
 gi|239875310|gb|EER03420.1| protein phosphatase 2C ABI2, putative [Perkinsus marinus ATCC
           50983]
          Length = 624

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 16/83 (19%)

Query: 4   RGSIKWYNPDKGYGFITPEGS-------------TESGDDV-FLHRSAVASAGLFNLTEG 49
           +G IK+Y+P + +G+IT  GS             + S DD+ F  R  + +  +  L  G
Sbjct: 136 KGRIKFYSPQRHFGYITVVGSPEGAEENEEDEDTSASQDDLYFNRRDLLDANEIEKLDTG 195

Query: 50  QLVTYDYVQNDANGKYSAENLKL 72
             VT+D  ++  NG++SA N+K+
Sbjct: 196 MPVTFDIAED--NGQFSAVNVKV 216


>gi|301758422|ref|XP_002915057.1| PREDICTED: LOW QUALITY PROTEIN: protein lin-28 homolog A-like
           [Ailuropoda melanoleuca]
          Length = 346

 Score = 37.2 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 5   GSIKWYNPDKGYGFITPEGSTES-------GDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           G+ KW++  +G  F +                +V ++ S +   G ++L EG+ V + + 
Sbjct: 104 GNCKWFSACRGLAFPSRTARRAGVALDLDPSMEVSVYGSQLHVGGFWSLKEGEAVQFTFK 163

Query: 58  QNDAN 62
           ++   
Sbjct: 164 KSAKG 168


>gi|20807463|ref|NP_622634.1| exoribonuclease [Thermoanaerobacter tengcongensis MB4]
 gi|20515989|gb|AAM24238.1| Exoribonucleases [Thermoanaerobacter tengcongensis MB4]
          Length = 708

 Score = 37.2 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 14  KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
           +GYGF+ PE   +   D+F+  S +  A      +G LV    ++         E +K++
Sbjct: 77  RGYGFLIPE--EQGIKDIFIPISGMNGA-----MDGDLVLVRVIEGAEGKSQEGEVVKIL 129

Query: 74  PKS 76
            ++
Sbjct: 130 KRA 132


>gi|226364925|ref|YP_002782707.1| hypothetical protein ROP_55150 [Rhodococcus opacus B4]
 gi|226243414|dbj|BAH53762.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 192

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD---YVQNDANGKY-SA 67
            ++G+G I  + +         H S V   G  +LT G  VT++    V    +G +  A
Sbjct: 129 DEEGWGVIDSDATPGGAWS---HFSLVEGPGYRSLTPGHEVTFEPETMVGGTQDGYHYRA 185

Query: 68  ENLKLVP 74
            +++ V 
Sbjct: 186 LDVRKVE 192



 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
          M   G ++ ++ +  +G I  + +      +F H  +VA  G   L EGQ V ++
Sbjct: 1  MATIGVVRSWSIEAMWGVIDSDETPGGCWTLF-H--SVAVEGFPALREGQQVEFE 52


>gi|320530928|ref|ZP_08031961.1| ribonuclease R [Selenomonas artemidis F0399]
 gi|320136793|gb|EFW28742.1| ribonuclease R [Selenomonas artemidis F0399]
          Length = 907

 Score = 37.2 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 14  KGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           KG+GFI P+   TE   DVF+  SA+A+A       G  V      ++  G+
Sbjct: 83  KGFGFIIPDVRDTEEETDVFVPGSALATA-----MHGDRVVARVTPSEQPGR 129


>gi|332982435|ref|YP_004463876.1| RNAse R [Mahella australiensis 50-1 BON]
 gi|332700113|gb|AEE97054.1| RNAse R [Mahella australiensis 50-1 BON]
          Length = 706

 Score = 37.2 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 17/56 (30%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVAS--------------AGLFNLTEGQLVT 53
             KG+GFI P+  ++   DV++    +                 G  +  EGQ+V 
Sbjct: 75  NAKGFGFIIPDDGSQ--KDVYVSADDINGAMNGDRVMAKILFSDGDRS-REGQIVQ 127


>gi|283834334|ref|ZP_06354075.1| putative cold-shock protein [Citrobacter youngae ATCC 29220]
 gi|291069867|gb|EFE07976.1| putative cold-shock protein [Citrobacter youngae ATCC 29220]
          Length = 158

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N+     SA 
Sbjct: 8  WF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTNNKG--LSAY 58

Query: 69 NLKLVPKS 76
           +K++P S
Sbjct: 59 AVKVIPDS 66


>gi|253700249|ref|YP_003021438.1| ribonuclease R [Geobacter sp. M21]
 gi|251775099|gb|ACT17680.1| ribonuclease R [Geobacter sp. M21]
          Length = 737

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE---GQLVTYDYVQNDANGKYSAENLK 71
           GYGF+ PE   E G+D+F+            LTE   G  V    V    +GK       
Sbjct: 77  GYGFVMPE---EGGEDLFVPA--------RYLTEYMHGDTVEAQVVSTRRDGKREGRVTA 125

Query: 72  LV 73
           LV
Sbjct: 126 LV 127


>gi|300779139|ref|ZP_07088997.1| competence factor transporter ComB [Chryseobacterium gleum ATCC
           35910]
 gi|300504649|gb|EFK35789.1| competence factor transporter ComB [Chryseobacterium gleum ATCC
           35910]
          Length = 142

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
              G +  +  +KGYGFIT + S E+   +F H     +     + +G  V+++  ++  
Sbjct: 80  RKTGIVT-FLSEKGYGFITEDNSKEN---IFFH----NNNCAEPVKKGNKVSFEKEKSPK 131

Query: 62  NGKYSAENLKLVP 74
              +SA  ++LV 
Sbjct: 132 G--FSAVEIQLVK 142


>gi|269468003|gb|EEZ79731.1| hypothetical protein Sup05_0432 [uncultured SUP05 cluster
          bacterium]
          Length = 107

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G +  +   KGYGFIT +     G+  F+H+  + +     L     V ++   +D   
Sbjct: 6  KGIVAQF-GTKGYGFITGD----DGEKYFVHQKNIYNK--ARLKADTRVVFNAENSDKG- 57

Query: 64 KYSAENLKL 72
             A ++KL
Sbjct: 58 -LVAVDVKL 65


>gi|254486969|ref|ZP_05100174.1| cold-shock DNA-binding domain protein [Roseobacter sp. GAI101]
 gi|214043838|gb|EEB84476.1| cold-shock DNA-binding domain protein [Roseobacter sp. GAI101]
          Length = 192

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 24  STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
           ST  G  V+ HR++V   G  +L EG  V       DA+    A  ++ +
Sbjct: 133 STTDGRLVYFHRNSVVRNGYDDLNEGDTVELSVDAKDADEGPHASIVRPI 182


>gi|300717273|ref|YP_003742076.1| cold-shock protein [Erwinia billingiae Eb661]
 gi|299063109|emb|CAX60229.1| Putative cold-shock protein [Erwinia billingiae Eb661]
          Length = 160

 Score = 37.2 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   V  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGDNRYFH--EVKVANPDLIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
                SA  +K+ P+S
Sbjct: 54 SKG--LSAYAVKVAPES 68


>gi|237745437|ref|ZP_04575917.1| exoribonuclease RNAse R [Oxalobacter formigenes HOxBLS]
 gi|229376788|gb|EEO26879.1| exoribonuclease RNAse R [Oxalobacter formigenes HOxBLS]
          Length = 794

 Score = 37.2 bits (86), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           GYGF+  +   + G+D+F     ++   +  +     V    V  D  G+     + +V 
Sbjct: 84  GYGFVIRD---DGGEDIF-----LSENEMQKVMHNDRVQVRIVHTDRKGRPEGIIVSVVS 135

Query: 75  KSS 77
           ++ 
Sbjct: 136 RAH 138


>gi|291285773|ref|YP_003502591.1| Cold shock-like protein cspF [Escherichia coli O55:H7 str.
          CB9615]
 gi|331666059|ref|ZP_08366953.1| conserved domain protein [Escherichia coli TA143]
 gi|290765646|gb|ADD59607.1| Cold shock-like protein cspF [Escherichia coli O55:H7 str.
          CB9615]
 gi|331057110|gb|EGI29104.1| conserved domain protein [Escherichia coli TA143]
          Length = 70

 Score = 36.9 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           G +K ++   G G ITP   ++   DV LH SA+       +T G  V +  + N   G
Sbjct: 6  TGILKTFDGKSGKGLITP---SDGRIDVQLHVSALNLRDAEEITTGLRVEFCRI-NGLRG 61

Query: 64 KYSAEN 69
            +A  
Sbjct: 62 PSAANV 67


>gi|302384866|ref|YP_003820688.1| transcription termination factor Rho [Clostridium saccharolyticum
           WM1]
 gi|302195494|gb|ADL03065.1| transcription termination factor Rho [Clostridium saccharolyticum
           WM1]
          Length = 538

 Score = 36.9 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           G+GFI  E      +DV++  S +    +     G     D +      K +AE
Sbjct: 177 GFGFIRCENYLPGENDVYVAPSQIRRFNMKT---G-----DIIHGSRRVKTAAE 222


>gi|109080056|ref|XP_001098123.1| PREDICTED: cold shock domain-containing protein E1-like [Macaca
          mulatta]
          Length = 133

 Score = 36.9 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
          +GFI  E        +F H + V   GL  L  G  V +    +   GK +  N+
Sbjct: 20 FGFINYEVG--DSKKLFFHVNEVE-DGLE-LQAGDEVEFSVTLHQRTGKCNTWNV 70


>gi|254282033|ref|ZP_04957001.1| ribonuclease R [gamma proteobacterium NOR51-B]
 gi|219678236|gb|EED34585.1| ribonuclease R [gamma proteobacterium NOR51-B]
          Length = 827

 Score = 36.9 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           GYGF  PE   E GDD+FL+   +       + +G  V    +  D  G+   + ++++ 
Sbjct: 122 GYGFAKPE---EGGDDLFLNNRQMQR-----VFDGDKVLAAIIGQDRRGRPEGQIVEVLE 173

Query: 75  KSS 77
           ++ 
Sbjct: 174 RAH 176


>gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide
           adenylyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) /
           Polynucleotide adenylyltransferase (EC 2.7.7.19)
           [Burkholderia rhizoxinica HKI 454]
          Length = 768

 Score = 36.9 bits (85), Expect = 0.98,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S +A+  + +    L EGQ V    +Q D  G+
Sbjct: 695 GRDGLLHISEIANERIKDINDYLKEGQQVKVKVIQTDEKGR 735


>gi|83646130|ref|YP_434565.1| hypothetical protein HCH_03390 [Hahella chejuensis KCTC 2396]
 gi|83634173|gb|ABC30140.1| uncharacterized conserved protein [Hahella chejuensis KCTC 2396]
          Length = 303

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 11/76 (14%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAG--------LFNL-TEGQLVTYDYVQNDAN 62
            DKG+GF+T +  +    D+F H S V  +G        +  +   G  + ++   ++  
Sbjct: 212 EDKGFGFLTVKEESGKTSDLFFHVSHVRFSGGTRPTNSEMTTIAKSGCQLEFERGISEKG 271

Query: 63  GKYSAENLKLVPKSSN 78
            K  A  +K++P S+ 
Sbjct: 272 NKTCA--VKIIPVSAE 285


>gi|241623490|ref|XP_002409126.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215503120|gb|EEC12614.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 348

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
           +GFI      +   ++F H S        +L+ G+ V +       NGK  A  +  +P 
Sbjct: 137 FGFIER---ADIVKEIFFHSS--ECRDFRSLSLGEDVEFSV--QLRNGKEVACGIVRLPT 189

Query: 76  SS 77
            +
Sbjct: 190 GT 191



 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 45  NLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
           +L  G  V +    +  +G   A N++LV +S
Sbjct: 254 SLQVGDRVQFCIATDRRDGLQRATNIELVDQS 285


>gi|134296437|ref|YP_001120172.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           vietnamiensis G4]
 gi|187470949|sp|A4JGD4|PNP_BURVG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134139594|gb|ABO55337.1| 3' exoribonuclease [Burkholderia vietnamiensis G4]
          Length = 715

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|167585967|ref|ZP_02378355.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ubonensis
           Bu]
          Length = 715

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|167562173|ref|ZP_02355089.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           oklahomensis EO147]
 gi|167569418|ref|ZP_02362292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           oklahomensis C6786]
          Length = 714

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|34496921|ref|NP_901136.1| polynucleotide phosphorylase/polyadenylase [Chromobacterium
           violaceum ATCC 12472]
 gi|81656248|sp|Q7NY10|PNP_CHRVO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|34102777|gb|AAQ59141.1| polyribonucleotide nucleotidyltransferase [Chromobacterium
           violaceum ATCC 12472]
          Length = 722

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78
           G D  +H S +A+  + N    L EGQ+V    ++ D  G+       L+ + + 
Sbjct: 654 GKDGLVHISQIANERIKNVSDYLKEGQVVKVKAIEMDDRGRIRLSIKALLEEEAK 708


>gi|171316299|ref|ZP_02905520.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MEX-5]
 gi|171098525|gb|EDT43326.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MEX-5]
          Length = 714

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|167836045|ref|ZP_02462928.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis MSMB43]
          Length = 706

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 635 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 684


>gi|291520556|emb|CBK75777.1| transcription termination factor Rho [Butyrivibrio fibrisolvens
           16/4]
          Length = 494

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           G+GFI  +      DDV++ +S +    L  
Sbjct: 134 GFGFIRCDNYMPGTDDVYVSQSQIKKFNLKT 164


>gi|239930682|ref|ZP_04687635.1| hypothetical protein SghaA1_20843 [Streptomyces ghanaensis ATCC
          14672]
 gi|291439044|ref|ZP_06578434.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
 gi|291341939|gb|EFE68895.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
          Length = 74

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
          +   +++ ++ ++G+G +     T  G   + H S +   G   L+ GQ V
Sbjct: 1  MVTATVREWHDEEGWG-VLDSPETPGG--CWAHFSHIQVKGFRTLSPGQQV 48


>gi|197107117|pdb|2K5N|A Chain A, Solution Nmr Structure Of The N-Terminal Domain Of
          Protein Eca1580 From Erwinia Carotovora, Northeast
          Structural Genomics Consortium Target Ewr156a
          Length = 74

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 1  MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59
          M   G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N
Sbjct: 1  MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53

Query: 60 DANGKYSAENLKLVPKS 76
          +     SA  +K+VP  
Sbjct: 54 NKG--LSAYAVKVVPLE 68


>gi|254298529|ref|ZP_04965981.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 406e]
 gi|157808347|gb|EDO85517.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 406e]
          Length = 713

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|53725829|ref|YP_103438.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           ATCC 23344]
 gi|67642196|ref|ZP_00440956.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Burkholderia
           mallei GB8 horse 4]
 gi|121601052|ref|YP_992465.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           SAVP1]
 gi|124384993|ref|YP_001026732.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           NCTC 10229]
 gi|126449416|ref|YP_001079983.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           NCTC 10247]
 gi|167000372|ref|ZP_02266190.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           PRL-20]
 gi|254175718|ref|ZP_04882378.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           10399]
 gi|254202114|ref|ZP_04908477.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
 gi|254207444|ref|ZP_04913794.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
 gi|254359866|ref|ZP_04976136.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           2002721280]
 gi|81604650|sp|Q62IN1|PNP_BURMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470944|sp|A3MI97|PNP_BURM7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470945|sp|A2S463|PNP_BURM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470946|sp|A1V2L2|PNP_BURMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52429252|gb|AAU49845.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           23344]
 gi|121229862|gb|ABM52380.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           SAVP1]
 gi|124293013|gb|ABN02282.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
           10229]
 gi|126242286|gb|ABO05379.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
           10247]
 gi|147746361|gb|EDK53438.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
 gi|147751338|gb|EDK58405.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
 gi|148029106|gb|EDK87011.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           2002721280]
 gi|160696762|gb|EDP86732.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           10399]
 gi|238523292|gb|EEP86731.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Burkholderia
           mallei GB8 horse 4]
 gi|243063706|gb|EES45892.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           PRL-20]
          Length = 713

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|254411566|ref|ZP_05025342.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC
          7420]
 gi|196181288|gb|EDX76276.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC
          7420]
          Length = 215

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 3  HRG--SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          H+G  ++ W   ++G+GFI P+   ++   VFLH + + +        G ++ Y      
Sbjct: 6  HKGQLTV-W-KDEEGFGFIKPDHGDQN---VFLHITGLKNPNRR-PQVGDIIRYQLTIG- 58

Query: 61 ANGKYSA 67
            GK  A
Sbjct: 59 KKGKLRA 65


>gi|53718843|ref|YP_107829.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei K96243]
 gi|76810240|ref|YP_332840.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 1710b]
 gi|126439036|ref|YP_001058334.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 668]
 gi|126454918|ref|YP_001065573.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 1106a]
 gi|134283923|ref|ZP_01770619.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 305]
 gi|167718839|ref|ZP_02402075.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei DM98]
 gi|167737848|ref|ZP_02410622.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 14]
 gi|167815032|ref|ZP_02446712.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 91]
 gi|167823448|ref|ZP_02454919.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 9]
 gi|167845000|ref|ZP_02470508.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei B7210]
 gi|167893541|ref|ZP_02480943.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 7894]
 gi|167901988|ref|ZP_02489193.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910223|ref|ZP_02497314.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 112]
 gi|167918256|ref|ZP_02505347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei BCC215]
 gi|217419798|ref|ZP_03451304.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 576]
 gi|226195372|ref|ZP_03790961.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811578|ref|YP_002896029.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei MSHR346]
 gi|242315054|ref|ZP_04814070.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254190554|ref|ZP_04897061.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254258157|ref|ZP_04949211.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710a]
 gi|81380050|sp|Q63VN7|PNP_BURPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123599745|sp|Q3JUB3|PNP_BURP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470947|sp|A3NTA2|PNP_BURP0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470948|sp|A3N7L3|PNP_BURP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52209257|emb|CAH35202.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei K96243]
 gi|76579693|gb|ABA49168.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710b]
 gi|126218529|gb|ABN82035.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 668]
 gi|126228560|gb|ABN92100.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106a]
 gi|134244712|gb|EBA44810.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 305]
 gi|157938229|gb|EDO93899.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|217397102|gb|EEC37118.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 576]
 gi|225932574|gb|EEH28572.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503430|gb|ACQ95748.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei MSHR346]
 gi|242138293|gb|EES24695.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254216846|gb|EET06230.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710a]
          Length = 713

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|261414726|ref|YP_003248409.1| guanine-specific ribonuclease N1 and T1 [Fibrobacter succinogenes
          subsp. succinogenes S85]
 gi|261371182|gb|ACX73927.1| guanine-specific ribonuclease N1 and T1 [Fibrobacter succinogenes
          subsp. succinogenes S85]
          Length = 249

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38
          ++ ++  +N +KG+GF     +T +G   F+H SA+
Sbjct: 5  NKATVTQWNEEKGFGF-----ATANGTKYFVHISAL 35


>gi|237730314|ref|ZP_04560795.1| cold shock protein E [Citrobacter sp. 30_2]
 gi|226905853|gb|EEH91771.1| cold shock protein E [Citrobacter sp. 30_2]
          Length = 158

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N+     SA 
Sbjct: 8  WF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTNNKG--LSAY 58

Query: 69 NLKLVPKS 76
           +K++P S
Sbjct: 59 AVKVIPDS 66


>gi|224825869|ref|ZP_03698973.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum
           2002]
 gi|224602093|gb|EEG08272.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum
           2002]
          Length = 719

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  +H S +A+  + N    L EGQ+V    ++ D  G+
Sbjct: 650 GKDGLVHISQIANERIKNVSDYLKEGQVVKVKAIEMDDRGR 690


>gi|170698105|ref|ZP_02889185.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           IOP40-10]
 gi|170136963|gb|EDT05211.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           IOP40-10]
          Length = 714

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|254251858|ref|ZP_04945176.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
           AUO158]
 gi|124894467|gb|EAY68347.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
           AUO158]
          Length = 722

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 650 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 699


>gi|325524616|gb|EGD02631.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49]
          Length = 713

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 640 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 689


>gi|296103463|ref|YP_003613609.1| cold-shock DNA-binding domain protein [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
 gi|295057922|gb|ADF62660.1| cold-shock DNA-binding domain protein [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
          Length = 157

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 9/68 (13%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N+     SA 
Sbjct: 8  WF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTNNKG--LSAY 58

Query: 69 NLKLVPKS 76
           +K++P+S
Sbjct: 59 AVKVIPES 66


>gi|254195065|ref|ZP_04901494.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei S13]
 gi|169651813|gb|EDS84506.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei S13]
          Length = 713

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|254247654|ref|ZP_04940975.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
           cenocepacia PC184]
 gi|124872430|gb|EAY64146.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
           cenocepacia PC184]
          Length = 730

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 657 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 706


>gi|78067050|ref|YP_369819.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. 383]
 gi|123742554|sp|Q39EE1|PNP_BURS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77967795|gb|ABB09175.1| 3' exoribonuclease [Burkholderia sp. 383]
          Length = 715

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|254181191|ref|ZP_04887788.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1655]
 gi|184211729|gb|EDU08772.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1655]
          Length = 713

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|258544720|ref|ZP_05704954.1| cold-shock DNA-binding domain protein [Cardiobacterium hominis
          ATCC 15826]
 gi|258520039|gb|EEV88898.1| cold-shock DNA-binding domain protein [Cardiobacterium hominis
          ATCC 15826]
          Length = 226

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 3  HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          ++G I  +N +KGYGFI      E+   +F H S  A            VT   V     
Sbjct: 22 YQGRIINWNDEKGYGFIQLMPGHEN---LFFHISTFAYH-HRRPAADTAVTVLAVPGQKG 77

Query: 63 GKYSAENL 70
          G  ++  L
Sbjct: 78 GWQASRVL 85


>gi|167618527|ref|ZP_02387158.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis Bt4]
          Length = 713

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|83718859|ref|YP_441610.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis E264]
 gi|167580418|ref|ZP_02373292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis TXDOH]
 gi|257139694|ref|ZP_05587956.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis E264]
 gi|123726649|sp|Q2SZN9|PNP_BURTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83652684|gb|ABC36747.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           thailandensis E264]
          Length = 713

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|115352342|ref|YP_774181.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
           AMMD]
 gi|172061213|ref|YP_001808865.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
           MC40-6]
 gi|122322637|sp|Q0BDC6|PNP_BURCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702626|sp|B1YTR1|PNP_BURA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115282330|gb|ABI87847.1| 3' exoribonuclease [Burkholderia ambifaria AMMD]
 gi|171993730|gb|ACB64649.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MC40-6]
          Length = 714

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    +   G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|150015522|ref|YP_001307776.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052]
 gi|149901987|gb|ABR32820.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052]
          Length = 755

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAENLK 71
            KG+GF+ PE   E   DVF+  + +  A       G  ++    + D    K   E ++
Sbjct: 100 SKGFGFLIPE--EEGQKDVFIPSNCINGA-----MNGDKISVRVTREDTKTKKREGEVVE 152

Query: 72  LVPKSS 77
           ++ +++
Sbjct: 153 IIERNT 158


>gi|27366480|ref|NP_762007.1| membrane protein [Vibrio vulnificus CMCP6]
 gi|37676186|ref|NP_936582.1| hypothetical protein VVA0526 [Vibrio vulnificus YJ016]
 gi|320158318|ref|YP_004190696.1| membrane protein [Vibrio vulnificus MO6-24/O]
 gi|27358046|gb|AAO06997.1| membrane protein [Vibrio vulnificus CMCP6]
 gi|37200727|dbj|BAC96552.1| predicted membrane protein [Vibrio vulnificus YJ016]
 gi|319933630|gb|ADV88493.1| membrane protein [Vibrio vulnificus MO6-24/O]
          Length = 200

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          M ++G I  ++ DKG GFI  +GS E      ++ +     G   L +  +VT++ V+ +
Sbjct: 1  MAYKGRIAQWSHDKGNGFIKIDGSGEM-----VYFNKAEVIGSATLDD--VVTFE-VERN 52

Query: 61 ANGKYSAENLK 71
           +G+  A  ++
Sbjct: 53 KHGQVVAVAVQ 63


>gi|238928002|ref|ZP_04659762.1| ribonuclease R [Selenomonas flueggei ATCC 43531]
 gi|238883962|gb|EEQ47600.1| ribonuclease R [Selenomonas flueggei ATCC 43531]
          Length = 898

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 14  KGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           KG+GFI P+   TE   DVF+  SA     +     G  V      ++  G+
Sbjct: 83  KGFGFIIPDVRETEEETDVFVPGSA-----MGTAMHGDRVVARVTPSEQPGR 129


>gi|206560707|ref|YP_002231472.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia J2315]
 gi|257096670|sp|B4E5M6|PNP_BURCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|198036749|emb|CAR52649.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 713

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 649 GKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 689


>gi|107023192|ref|YP_621519.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia AU 1054]
 gi|116690274|ref|YP_835897.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia HI2424]
 gi|123244852|sp|Q1BV09|PNP_BURCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470943|sp|A0K927|PNP_BURCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|105893381|gb|ABF76546.1| 3' exoribonuclease [Burkholderia cenocepacia AU 1054]
 gi|116648363|gb|ABK09004.1| 3' exoribonuclease [Burkholderia cenocepacia HI2424]
          Length = 715

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 651 GKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|221199652|ref|ZP_03572696.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2M]
 gi|221205448|ref|ZP_03578463.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2]
 gi|221174286|gb|EEE06718.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2]
 gi|221180937|gb|EEE13340.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2M]
          Length = 715

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 651 GKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|197118978|ref|YP_002139405.1| exoribonuclease R [Geobacter bemidjiensis Bem]
 gi|197088338|gb|ACH39609.1| exoribonuclease R [Geobacter bemidjiensis Bem]
          Length = 737

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE---GQLVTYDYVQNDANGKYSAENLK 71
           GYGF+ PE   E G+D+F+            LTE   G +V    V    +GK       
Sbjct: 77  GYGFVMPE---EGGEDLFVPA--------RYLTEYMNGDIVEAQVVSTRRDGKREGRVTA 125

Query: 72  LV 73
           LV
Sbjct: 126 LV 127


>gi|221211731|ref|ZP_03584710.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD1]
 gi|221169092|gb|EEE01560.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD1]
          Length = 713

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 649 GKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 689


>gi|161524200|ref|YP_001579212.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           multivorans ATCC 17616]
 gi|189351043|ref|YP_001946671.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           multivorans ATCC 17616]
 gi|226702628|sp|A9AJP0|PNP_BURM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160341629|gb|ABX14715.1| Polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|189335065|dbj|BAG44135.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           ATCC 17616]
          Length = 715

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 651 GKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|170733613|ref|YP_001765560.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia MC0-3]
 gi|226702627|sp|B1JVP5|PNP_BURCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169816855|gb|ACA91438.1| Polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
           MC0-3]
          Length = 715

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 651 GKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691


>gi|22125068|ref|NP_668491.1| hypothetical protein y1165 [Yersinia pestis KIM 10]
 gi|108808498|ref|YP_652414.1| hypothetical protein YPA_2505 [Yersinia pestis Antiqua]
 gi|108811243|ref|YP_647010.1| hypothetical protein YPN_1079 [Yersinia pestis Nepal516]
 gi|145599923|ref|YP_001163999.1| hypothetical protein YPDSF_2660 [Yersinia pestis Pestoides F]
 gi|229895930|ref|ZP_04511100.1| putative cold-shock protein [Yersinia pestis Pestoides A]
 gi|229901478|ref|ZP_04516600.1| putative cold-shock protein [Yersinia pestis Nepal516]
 gi|21957921|gb|AAM84742.1|AE013720_6 putative cold-shock protein [Yersinia pestis KIM 10]
 gi|108774891|gb|ABG17410.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516]
 gi|108780411|gb|ABG14469.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua]
 gi|145211619|gb|ABP41026.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides
          F]
 gi|229681407|gb|EEO77501.1| putative cold-shock protein [Yersinia pestis Nepal516]
 gi|229700853|gb|EEO88882.1| putative cold-shock protein [Yersinia pestis Pestoides A]
 gi|320016203|gb|ADV99774.1| putative cold-shock protein [Yersinia pestis biovar Medievalis
          str. Harbin 35]
          Length = 163

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           +  G I  +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N 
Sbjct: 3  CMMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNT 56

Query: 61 ANGKYSAENLKLVPKS 76
               SA  +K+  +S
Sbjct: 57 KG--LSAFAVKVAIES 70


>gi|119577018|gb|EAW56614.1| cold shock domain containing E1, RNA-binding, isoform CRA_c [Homo
          sapiens]
          Length = 206

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  L  + +
Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92

Query: 76 S 76
           
Sbjct: 93 E 93



 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 4/41 (9%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           +GFI      +   ++F H S      L  L  G  V +  
Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI 202


>gi|24373299|ref|NP_717342.1| cold shock domain-contain protein [Shewanella oneidensis MR-1]
 gi|24347543|gb|AAN54786.1|AE015618_7 cold shock domain family protein [Shewanella oneidensis MR-1]
          Length = 224

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQND 60
          +G +  Y   K YGFI  +     G+  FLH S +      G   L +G +V +D     
Sbjct: 2  KGKVVSYLAAKKYGFIQGD----DGESYFLHFSELLDKKDEG--KLVKGSMVHFDPTPTP 55

Query: 61 ANGKYSAENLKL 72
               +A+ + L
Sbjct: 56 KG--LAAKAISL 65


>gi|297832618|ref|XP_002884191.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330031|gb|EFH60450.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 55

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          SGDD+F+H+S ++S    +L   + V +    ++A+   + E 
Sbjct: 5  SGDDLFVHQS-ISSEKFRSLAVDEAVEFKVEVDNASRLKTVEV 46


>gi|269303381|gb|ACZ33481.1| 3'-5' exoribonuclease, VacB and RNase II family [Chlamydophila
          pneumoniae LPCoLN]
          Length = 659

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            KG+GF++P+   E   D+F+    +  A      +G  V    +    +G+ 
Sbjct: 13 ARKGFGFVSPDNPEEYPFDIFVPARDLRGA-----LDGDHVIVSVLPYPRDGQK 61


>gi|15618415|ref|NP_224700.1| ribonuclease family protein [Chlamydophila pneumoniae CWL029]
 gi|15836035|ref|NP_300559.1| ribonuclease family protein [Chlamydophila pneumoniae J138]
 gi|16752538|ref|NP_444800.1| VacB/Rnb family exoribonuclease [Chlamydophila pneumoniae AR39]
 gi|33241856|ref|NP_876797.1| proteins of ribonuclease [Chlamydophila pneumoniae TW-183]
 gi|7674336|sp|Q9Z848|RNR_CHLPN RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
          protein homolog
 gi|4376791|gb|AAD18644.1| ribonuclease family [Chlamydophila pneumoniae CWL029]
 gi|8163396|gb|AAF73648.1| exoribonuclease, VacB/Rnb family [Chlamydophila pneumoniae AR39]
 gi|8978874|dbj|BAA98710.1| ribonuclease family [Chlamydophila pneumoniae J138]
 gi|33236365|gb|AAP98454.1| proteins of ribonuclease [Chlamydophila pneumoniae TW-183]
          Length = 676

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            KG+GF++P+   E   D+F+    +  A      +G  V    +    +G+ 
Sbjct: 30 ARKGFGFVSPDNPEEYPFDIFVPARDLRGA-----LDGDHVIVSVLPYPRDGQK 78


>gi|224006730|ref|XP_002292325.1| hypothetical protein THAPSDRAFT_263580 [Thalassiosira pseudonana
          CCMP1335]
 gi|220971967|gb|EED90300.1| hypothetical protein THAPSDRAFT_263580 [Thalassiosira pseudonana
          CCMP1335]
          Length = 329

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK-YSAEN--LKL 72
          +GFI      +   ++F H S +       L  G  V +     +++GK   A N  L+L
Sbjct: 12 FGFI---LCADRNLELFFHYSELRDGHSDELNIGDEVEFRVGAAESHGKPPRAVNGVLRL 68

Query: 73 VPKSSN 78
           P+   
Sbjct: 69 APEEPQ 74


>gi|51595434|ref|YP_069625.1| hypothetical protein YPTB1087 [Yersinia pseudotuberculosis IP
          32953]
 gi|51588716|emb|CAH20327.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
          32953]
          Length = 163

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
           +  G I  +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N 
Sbjct: 3  CMMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNT 56

Query: 61 ANGKYSAENLKLVPKS 76
               SA  +K+  +S
Sbjct: 57 KG--LSAFAVKVAIES 70


>gi|219119668|ref|XP_002180589.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408062|gb|EEC47997.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1240

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 21/82 (25%)

Query: 14  KG-YGFITPEGSTESGDDVFLHRSAVASAGLFN----------LTEGQLVTYDYVQNDAN 62
           KG YGF+      E    V+ H S++  +   +          L EGQ + +  VQ+D  
Sbjct: 359 KGDYGFLKSNKRREQ---VYFHYSSIHLSDDEDGDGADDEDFVLKEGQEMKFLVVQDDRE 415

Query: 63  G-------KYSAENLKLVPKSS 77
           G       + SA  +K  P+ S
Sbjct: 416 GSNRPSQRRISARKVKAQPRGS 437



 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 14/75 (18%)

Query: 16   YGFITP-EGSTESGDDVFLHRSAVASAGLFN------------LTEGQLVTYDYVQNDAN 62
            +GFI+  + +    + +F + S+V  A                + +G  V +D    + N
Sbjct: 933  FGFISVLDDNAAKREILFFNLSSVLGASPETESTAPANKKKALIRKGDEVKFDIG-TEKN 991

Query: 63   GKYSAENLKLVPKSS 77
            GK  A N+ ++PK +
Sbjct: 992  GKRVALNVTVLPKET 1006


>gi|304438603|ref|ZP_07398542.1| ribonuclease R [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368441|gb|EFM22127.1| ribonuclease R [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 904

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 14  KGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           KG+GFI P+   TE   DVF+  SA     +     G  V      ++  G+
Sbjct: 83  KGFGFIIPDVRETEEETDVFVPGSA-----MGTAMHGDRVVARVTPSEQPGR 129


>gi|284038322|ref|YP_003388252.1| hypothetical protein Slin_3445 [Spirosoma linguale DSM 74]
 gi|283817615|gb|ADB39453.1| protein of unknown function DUF88 [Spirosoma linguale DSM 74]
          Length = 338

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
           GYGF+    +      +F H +++       L     V +   +N A GK  A +++L+
Sbjct: 284 GYGFVNYPPNN-----LFFHYTSLIDTDFNELQVDDEVEFTVGRN-AEGKDIAIDVRLL 336


>gi|255280022|ref|ZP_05344577.1| transcription termination factor Rho [Bryantella formatexigens DSM
           14469]
 gi|255269113|gb|EET62318.1| transcription termination factor Rho [Bryantella formatexigens DSM
           14469]
          Length = 482

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGFI         +DV++  S +   GL  
Sbjct: 123 GYGFIRSNNYLPGENDVYVSPSQIRRFGLKT 153


>gi|325663558|ref|ZP_08151968.1| ribonuclease R [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470457|gb|EGC73688.1| ribonuclease R [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 723

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 1   MVHRGSIK---WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           ++  G++K   ++  +K +GF+ P+       D+F+    +  +       G  V  +  
Sbjct: 131 ILSHGTVKLVGYFQKNKNFGFVIPDNDRFV-KDIFV---PLERS--KGAVTGHKVVVELT 184

Query: 58  QNDANGKY 65
               +GK 
Sbjct: 185 SYGKDGKK 192


>gi|238762892|ref|ZP_04623860.1| Cold-shock DNA-binding domain protein [Yersinia kristensenii ATCC
          33638]
 gi|238698903|gb|EEP91652.1| Cold-shock DNA-binding domain protein [Yersinia kristensenii ATCC
          33638]
          Length = 160

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G I  +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N  
Sbjct: 1  MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54

Query: 62 NGKYSAENLKLVPKS 76
              SA  +K+  +S
Sbjct: 55 G--LSAFAVKVAIES 67


>gi|119946330|ref|YP_944010.1| cold-shock DNA-binding domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119864934|gb|ABM04411.1| cold-shock DNA-binding domain protein [Psychromonas ingrahamii 37]
          Length = 189

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
           DK +G I     T  G D++ HR+++  +G   L  G  V +   +    G   A +++L
Sbjct: 127 DKDFGRI----LTADGRDIYFHRNSLVDSGFDALEIGNEVRF-VEEAGDQGPQ-ASSVRL 180

Query: 73  V 73
           +
Sbjct: 181 I 181


>gi|91782608|ref|YP_557814.1| polynucleotide phosphorylase/polyadenylase [Burkholderia xenovorans
           LB400]
 gi|122970578|sp|Q142H7|PNP_BURXL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91686562|gb|ABE29762.1| Putative polyribonucleotide nucleotidyltransferase [Burkholderia
           xenovorans LB400]
          Length = 716

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78
           G D  LH S +A+  + +    L +GQ V    +Q D  G+       L+  ++N
Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAAN 705


>gi|331087075|ref|ZP_08336149.1| ribonuclease R [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409355|gb|EGG88802.1| ribonuclease R [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 723

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 1   MVHRGSIK---WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           ++  G++K   ++  +K +GF+ P+       D+F+    +  +       G  V  +  
Sbjct: 131 ILSHGTVKLVGYFQKNKNFGFVIPDNDRFV-KDIFV---PLERS--KGAVTGHKVVVELT 184

Query: 58  QNDANGKY 65
               +GK 
Sbjct: 185 SYGKDGKK 192


>gi|315658865|ref|ZP_07911732.1| ribonuclease R [Staphylococcus lugdunensis M23590]
 gi|315495989|gb|EFU84317.1| ribonuclease R [Staphylococcus lugdunensis M23590]
          Length = 799

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGKYSAEN 69
             KG+GF+ PE   +  +D+F+  + +  A      +G  V  +  Q   D  GK   E 
Sbjct: 88  NKKGFGFLRPEN--DDMEDIFIPPTKINRA-----LDGDTVIVEVKQSKGDHKGKIEGEV 140

Query: 70  LKLVPKS 76
             +   S
Sbjct: 141 KSIEKHS 147


>gi|296160625|ref|ZP_06843440.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
 gi|295889151|gb|EFG68954.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
          Length = 716

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78
           G D  LH S +A+  + +    L +GQ V    +Q D  G+       L+  ++N
Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAAN 705


>gi|289551358|ref|YP_003472262.1| 3'-to-5' exoribonuclease RNase R [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180889|gb|ADC88134.1| 3'-to-5' exoribonuclease RNase R [Staphylococcus lugdunensis
           HKU09-01]
          Length = 791

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGKYSAEN 69
             KG+GF+ PE   +  +D+F+  + +  A      +G  V  +  Q   D  GK   E 
Sbjct: 80  NKKGFGFLRPEN--DDMEDIFIPPTKINRA-----LDGDTVIVEVKQSKGDHKGKIEGEV 132

Query: 70  LKLVPKS 76
             +   S
Sbjct: 133 KSIEKHS 139


>gi|255011444|ref|ZP_05283570.1| hypothetical protein Bfra3_20035 [Bacteroides fragilis 3_1_12]
          Length = 1015

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 11/49 (22%)

Query: 9   WYNPDKGYGF-ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           W+N  KG GF I  E              AVA +G   L  GQ +T+D+
Sbjct: 576 WFNGGKG-GFSIRKEADG---------VKAVAYSGARTLKPGQSITFDF 614


>gi|311279890|ref|YP_003942121.1| Cold-shock protein DNA-binding protein [Enterobacter cloacae
          SCF1]
 gi|308749085|gb|ADO48837.1| Cold-shock protein DNA-binding protein [Enterobacter cloacae
          SCF1]
          Length = 160

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 4  RGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          +G+I  W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N   
Sbjct: 2  QGTITTWF-EDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTNSKG 54

Query: 63 GKYSAENLKLVPKS 76
             SA  +K++P S
Sbjct: 55 --LSAYAVKVIPDS 66


>gi|294139378|ref|YP_003555356.1| cold shock domain family protein [Shewanella violacea DSS12]
 gi|293325847|dbj|BAJ00578.1| cold shock domain family protein [Shewanella violacea DSS12]
          Length = 158

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 9/47 (19%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESG---------DDVFLHRSAVA 39
          + +G +  +N DKG GFI P+ S              ++F+H SA+ 
Sbjct: 18 MLKGILIRWNDDKGCGFIRPDASHVDMATLHGPASEQEIFIHISALK 64


>gi|237809346|ref|YP_002893786.1| ribonuclease R [Tolumonas auensis DSM 9187]
 gi|237501607|gb|ACQ94200.1| ribonuclease R [Tolumonas auensis DSM 9187]
          Length = 806

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
           GYGF+ P+     G D+F     +    + +L  G  V     + DA G+  A  ++L+
Sbjct: 96  GYGFLRPDS---GGADLF-----LNQWDMASLMHGDYVLVQPTKTDAKGRQEARLVRLL 146


>gi|313149261|ref|ZP_07811454.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138028|gb|EFR55388.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 1002

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 11/49 (22%)

Query: 9   WYNPDKGYGF-ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           W+N  KG GF I  E              AVA +G   L  GQ +T+D+
Sbjct: 563 WFNGGKG-GFSIRKEADG---------VKAVAYSGARTLKPGQSITFDF 601


>gi|283478943|emb|CAY74859.1| Cold shock-like protein cspD (CPS-D) [Erwinia pyrifoliae DSM
          12163]
          Length = 40

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 8/23 (34%)

Query: 40 SAGLFNLTEGQLVTYDYVQNDAN 62
            G   L  GQ V +D  Q    
Sbjct: 1  MDGYRTLKAGQQVQFDVHQGPKG 23


>gi|74316626|ref|YP_314366.1| RNAse R [Thiobacillus denitrificans ATCC 25259]
 gi|74056121|gb|AAZ96561.1| exoribonuclease II [Thiobacillus denitrificans ATCC 25259]
          Length = 758

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           G+GF+ PE   E GDD+F   S         L  G  V       D  G+  A+ ++++ 
Sbjct: 112 GFGFVVPE---EGGDDLF--LSPKEM--HRVLH-GDKVLVRVAGFDRRGRREAKIVEVLE 163


>gi|220910201|ref|YP_002485512.1| cold-shock DNA-binding domain-containing protein [Cyanothece sp.
           PCC 7425]
 gi|219866812|gb|ACL47151.1| cold-shock DNA-binding domain protein [Cyanothece sp. PCC 7425]
          Length = 207

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
           ++GYGF+     T  G++++ HR++V       L  G  V +  V+        A  +++
Sbjct: 131 EQGYGFL----KTLGGEEIYFHRNSVLHDDFERLEVGTGVRFVAVEGAEG--LQASTVQI 184

Query: 73  VPK 75
           V K
Sbjct: 185 VDK 187


>gi|85857886|ref|YP_460088.1| cold shock DNA -binding domain-containing protein [Syntrophus
           aciditrophicus SB]
 gi|85720977|gb|ABC75920.1| cold shock DNA-binding domain [Syntrophus aciditrophicus SB]
          Length = 176

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
           PD+GYGF+        G DV+ H ++V +     L  G  V ++    D   + S+  +
Sbjct: 121 PDQGYGFLV----HPEGYDVYFHANSVLNRDFDKLAVGMEVRFNEEMGDKGPQASSVIV 175


>gi|238752586|ref|ZP_04614059.1| Cold-shock DNA-binding domain protein [Yersinia rohdei ATCC
          43380]
 gi|238709177|gb|EEQ01422.1| Cold-shock DNA-binding domain protein [Yersinia rohdei ATCC
          43380]
          Length = 160

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G I  +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N  
Sbjct: 1  MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54

Query: 62 NGKYSAENLKLVPKS 76
              SA  +K+  +S
Sbjct: 55 G--LSAFAVKVAIES 67


>gi|260881476|ref|ZP_05404494.2| ribonuclease R [Mitsuokella multacida DSM 20544]
 gi|260848528|gb|EEX68535.1| ribonuclease R [Mitsuokella multacida DSM 20544]
          Length = 897

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 13  DKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS-AENL 70
            KG+GFI P+   +E   DVF+       A L     G  V          G+    E +
Sbjct: 76  AKGFGFIIPDVRESEEETDVFV-----PGADLNTAMHGDRVVARVTPAQEEGRSREGEII 130

Query: 71  KLVPKSSN 78
           +++ +++ 
Sbjct: 131 RILERANE 138


>gi|283477603|emb|CAY73519.1| Cold shock-like protein cspLA (CspL) [Erwinia pyrifoliae DSM
          12163]
          Length = 158

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N      SA 
Sbjct: 8  WF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTNTKG--LSAY 58

Query: 69 NLKLVPKS 76
           +K+ P+S
Sbjct: 59 AVKVAPES 66


>gi|187926454|ref|YP_001892799.1| putative cold-shock DNA-binding domain protein [Ralstonia
          pickettii 12J]
 gi|241665941|ref|YP_002984300.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D]
 gi|309778742|ref|ZP_07673515.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
 gi|187728208|gb|ACD29372.1| putative cold-shock DNA-binding domain protein [Ralstonia
          pickettii 12J]
 gi|240867968|gb|ACS65628.1| putative cold-shock DNA-binding domain protein [Ralstonia
          pickettii 12D]
 gi|308922450|gb|EFP68074.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
          Length = 68

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
          F+  S +  +      EGQ V++D V+   +G+  A N+K +
Sbjct: 28 FIRDSEIQFSRSQTFHEGQRVSFD-VEIGPDGELIAVNIKPI 68


>gi|238790449|ref|ZP_04634219.1| Cold-shock DNA-binding domain protein [Yersinia frederiksenii
          ATCC 33641]
 gi|238721475|gb|EEQ13145.1| Cold-shock DNA-binding domain protein [Yersinia frederiksenii
          ATCC 33641]
          Length = 160

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G I  +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N  
Sbjct: 1  MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54

Query: 62 NGKYSAENLKLVPKS 76
              SA  +K+  +S
Sbjct: 55 G--LSAYAVKVAIES 67


>gi|295096673|emb|CBK85763.1| cold-shock DNA-binding protein family [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 157

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N      SA 
Sbjct: 8  WF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTNSKG--LSAY 58

Query: 69 NLKLVPKS 76
           +K++P+S
Sbjct: 59 AVKVIPES 66


>gi|145629456|ref|ZP_01785254.1| cold shock-like protein CspD [Haemophilus influenzae 22.1-21]
 gi|144978299|gb|EDJ88063.1| cold shock-like protein CspD [Haemophilus influenzae 22.1-21]
          Length = 37

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 40 SAGLFNLTEGQLVTYDYVQNDAN 62
            G  +L  GQ V ++ + +D  
Sbjct: 1  MDGYRSLKAGQKVQFEVLHSDKG 23


>gi|326201367|ref|ZP_08191239.1| ribonuclease R [Clostridium papyrosolvens DSM 2782]
 gi|325988935|gb|EGD49759.1| ribonuclease R [Clostridium papyrosolvens DSM 2782]
          Length = 788

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56
           +     +GF+ P+    SG D+F+ +S    A      +GQ V  + 
Sbjct: 145 FENSMSFGFVVPDNKRISG-DIFVSKSEFQGA-----KKGQKVVVEI 185


>gi|269837033|ref|YP_003319261.1| transcription termination factor Rho [Sphaerobacter thermophilus
          DSM 20745]
 gi|269786296|gb|ACZ38439.1| transcription termination factor Rho [Sphaerobacter thermophilus
          DSM 20745]
          Length = 417

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          G+GF+  E      +D+++ +S +   GL     G  V+
Sbjct: 63 GFGFLRGERYLPGPNDIYVSQSQIRRFGLRT---GDWVS 98


>gi|209518519|ref|ZP_03267340.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
 gi|209501064|gb|EEA01099.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
          Length = 711

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S +A+  + +    L +GQ V    +Q D  G+
Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGR 691


>gi|45440951|ref|NP_992490.1| hypothetical protein YP_1121 [Yersinia pestis biovar Microtus
          str. 91001]
 gi|166008568|ref|ZP_02229466.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166212632|ref|ZP_02238667.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167399412|ref|ZP_02304936.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167423108|ref|ZP_02314861.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|270489664|ref|ZP_06206738.1| cold-shock DNA-binding domain protein [Yersinia pestis KIM D27]
 gi|45435810|gb|AAS61367.1| putative cold-shock protein [Yersinia pestis biovar Microtus str.
          91001]
 gi|165992950|gb|EDR45251.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. E1979001]
 gi|166206563|gb|EDR51043.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. B42003004]
 gi|167051916|gb|EDR63324.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
          Antiqua str. UG05-0454]
 gi|167057278|gb|EDR67024.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|262362610|gb|ACY59331.1| putative cold-shock protein [Yersinia pestis D106004]
 gi|262366387|gb|ACY62944.1| putative cold-shock protein [Yersinia pestis D182038]
 gi|270338168|gb|EFA48945.1| cold-shock DNA-binding domain protein [Yersinia pestis KIM D27]
          Length = 160

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G I  +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N  
Sbjct: 1  MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54

Query: 62 NGKYSAENLKLVPKS 76
              SA  +K+  +S
Sbjct: 55 G--LSAFAVKVAIES 67


>gi|238795420|ref|ZP_04638935.1| Cold-shock DNA-binding domain protein [Yersinia mollaretii ATCC
          43969]
 gi|238720539|gb|EEQ12340.1| Cold-shock DNA-binding domain protein [Yersinia mollaretii ATCC
          43969]
          Length = 160

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G I  +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N  
Sbjct: 1  MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54

Query: 62 NGKYSAENLKLVPKS 76
              SA  +K+  +S
Sbjct: 55 G--LSAFAVKVAIES 67


>gi|116670295|ref|YP_831228.1| cold-shock DNA-binding domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116610404|gb|ABK03128.1| putative cold-shock DNA-binding domain protein [Arthrobacter sp.
           FB24]
          Length = 178

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47
           G++  ++ +KG G I P+   +  + V LH +++       L 
Sbjct: 137 GAVLRFHAEKGLGIIVPD---DGSEVVLLHYTSIVGVKYRVLR 176


>gi|323525432|ref|YP_004227585.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1001]
 gi|323382434|gb|ADX54525.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1001]
          Length = 715

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S +A+  + +    L +GQ V    +Q D  G+
Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGR 691


>gi|238791627|ref|ZP_04635265.1| Cold-shock DNA-binding domain protein [Yersinia intermedia ATCC
          29909]
 gi|238729243|gb|EEQ20759.1| Cold-shock DNA-binding domain protein [Yersinia intermedia ATCC
          29909]
          Length = 160

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G I  +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N  
Sbjct: 1  MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54

Query: 62 NGKYSAENLKLVPKS 76
              SA  +K+  +S
Sbjct: 55 G--LSAFAVKVAIES 67


>gi|153948592|ref|YP_001401921.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|152960087|gb|ABS47548.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis IP 31758]
          Length = 160

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G I  +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N  
Sbjct: 1  MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54

Query: 62 NGKYSAENLKLVPKS 76
              SA  +K+  +S
Sbjct: 55 G--LSAFAVKVAIES 67


>gi|170691678|ref|ZP_02882842.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
           C4D1M]
 gi|170142962|gb|EDT11126.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
           C4D1M]
          Length = 715

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S +A+  + +    L +GQ V    +Q D  G+
Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGR 691


>gi|328954437|ref|YP_004371771.1| ribonuclease R [Desulfobacca acetoxidans DSM 11109]
 gi|328454761|gb|AEB10590.1| ribonuclease R [Desulfobacca acetoxidans DSM 11109]
          Length = 700

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           G+GF+TPE  T    D+F     +    L     G  V     +    GK     ++++ 
Sbjct: 70  GFGFVTPESQT---GDIF-----INPGNLTEALHGDKVVVRLERRGRRGKQEGRIIRVLE 121

Query: 75  K 75
           +
Sbjct: 122 R 122


>gi|222056473|ref|YP_002538835.1| ribonuclease R [Geobacter sp. FRC-32]
 gi|221565762|gb|ACM21734.1| ribonuclease R [Geobacter sp. FRC-32]
          Length = 758

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 15/64 (23%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE---GQLVTYDYVQNDANGKYSAENLK 71
           GYGF+ PE     G+DVF+            L E   G  V    V    +GK     +K
Sbjct: 79  GYGFVMPE----EGEDVFIPA--------RYLRENMHGDRVEVQIVAKKRDGKQEGRIVK 126

Query: 72  LVPK 75
            + +
Sbjct: 127 TLER 130


>gi|159163306|pdb|1WFQ|A Chain A, Solution Structure Of The First Cold-Shock Domain Of The
          Human Kiaa0885 Protein (Unr Protein)
          Length = 89

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75
          YGFI     +E    +F H S      L +L  G  V ++   +   GK  A  +KLV  
Sbjct: 30 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIA--VKLVKI 83

Query: 76 SS 77
          S 
Sbjct: 84 SG 85


>gi|307730344|ref|YP_003907568.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1003]
 gi|307584879|gb|ADN58277.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1003]
          Length = 715

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S +A+  + +    L +GQ V    +Q D  G+
Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGR 691


>gi|295676033|ref|YP_003604557.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1002]
 gi|295435876|gb|ADG15046.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1002]
          Length = 711

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S +A+  + +    L +GQ V    +Q D  G+
Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGR 691


>gi|187923336|ref|YP_001894978.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           phytofirmans PsJN]
 gi|226702630|sp|B2T2E3|PNP_BURPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187714530|gb|ACD15754.1| Polyribonucleotide nucleotidyltransferase [Burkholderia
           phytofirmans PsJN]
          Length = 718

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S +A+  + +    L +GQ V    +Q D  G+
Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGR 691


>gi|153814373|ref|ZP_01967041.1| hypothetical protein RUMTOR_00583 [Ruminococcus torques ATCC 27756]
 gi|317500087|ref|ZP_07958322.1| transcription termination factor Rho [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087689|ref|ZP_08336615.1| transcription termination factor Rho [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848769|gb|EDK25687.1| hypothetical protein RUMTOR_00583 [Ruminococcus torques ATCC 27756]
 gi|316898572|gb|EFV20608.1| transcription termination factor Rho [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409670|gb|EGG89106.1| transcription termination factor Rho [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 473

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           G+GFI  +      +DV++  + +   GL  
Sbjct: 114 GFGFIRSDNYLPGENDVYVSPAQIRRFGLKT 144


>gi|226940843|ref|YP_002795917.1| polynucleotide phosphorylase/polyadenylase [Laribacter
           hongkongensis HLHK9]
 gi|254782724|sp|C1D8W8|PNP_LARHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226715770|gb|ACO74908.1| Pnp [Laribacter hongkongensis HLHK9]
          Length = 701

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 2   VHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDY 56
           ++ G++ K  +  K  G I        G D  +H S +A+  +     +L EGQ V    
Sbjct: 624 IYEGTVVKILD--KNVGAIVQIMP---GRDGLVHISQIANERIANVADHLQEGQQVRVKV 678

Query: 57  VQNDANGK 64
           ++ D  G+
Sbjct: 679 LETDERGR 686


>gi|118379492|ref|XP_001022912.1| conserved hypothetical protein [Tetrahymena thermophila]
 gi|89304679|gb|EAS02667.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
          Length = 1152

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 13/85 (15%)

Query: 3   HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-------GLFNLTEGQLVTYD 55
            +G +K+++    +GF   +   E   DVF+H   +             +L       + 
Sbjct: 880 KKGRLKFFDTSNNFGFFNLD---EDQSDVFVHLDDLQVTTVPKDILKHSSLM-NLRFKFH 935

Query: 56  YVQNDANGKYS--AENLKLVPKSSN 78
           +++     K S  A +++ +P+ S 
Sbjct: 936 FIKYIGKHKQSRKAVDIEYIPEESE 960


>gi|308233576|ref|ZP_07664313.1| transcription termination factor Rho [Atopobium vaginae DSM 15829]
 gi|328943971|ref|ZP_08241436.1| transcription termination factor Rho [Atopobium vaginae DSM 15829]
 gi|327491940|gb|EGF23714.1| transcription termination factor Rho [Atopobium vaginae DSM 15829]
          Length = 720

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLF 44
           GYGFI         +D F+H+  +   GL 
Sbjct: 354 GYGFIRTGNYMSGDNDAFVHQQLIRQYGLR 383


>gi|240115680|ref|ZP_04729742.1| CspA [Neisseria gonorrhoeae PID18]
 gi|240117975|ref|ZP_04732037.1| CspA [Neisseria gonorrhoeae PID1]
 gi|268601355|ref|ZP_06135522.1| CspA [Neisseria gonorrhoeae PID18]
 gi|268603683|ref|ZP_06137850.1| CspA [Neisseria gonorrhoeae PID1]
 gi|268585486|gb|EEZ50162.1| CspA [Neisseria gonorrhoeae PID18]
 gi|268587814|gb|EEZ52490.1| CspA [Neisseria gonorrhoeae PID1]
          Length = 192

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G +KWY+ +K +GFI      E G + F  +SA       +   GQ+V ++  ++   
Sbjct: 3  GFVKWYSYEKDFGFI----FGEDGHEYFFRKSA------GSDIPGQIVNFEPFEHSRG 50


>gi|302335537|ref|YP_003800744.1| transcription termination factor Rho [Olsenella uli DSM 7084]
 gi|301319377|gb|ADK67864.1| transcription termination factor Rho [Olsenella uli DSM 7084]
          Length = 683

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           GYGF+         DD F+H+  +   G   L  G  V
Sbjct: 319 GYGFLRTGNYMVGEDDAFVHQQLIRQYG---LRAGDKV 353


>gi|224061583|ref|XP_002300552.1| predicted protein [Populus trichocarpa]
 gi|222847810|gb|EEE85357.1| predicted protein [Populus trichocarpa]
          Length = 190

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTES 27
             GS+KW++  +GYG   P   +++
Sbjct: 66 RQTGSVKWFSSQRGYGLTAPSDGSKN 91


>gi|153003332|ref|YP_001377657.1| cold-shock DNA-binding domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152026905|gb|ABS24673.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter
           sp. Fw109-5]
          Length = 197

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
           P++ YGF+     T  G DV+ H +AV       L  G+ V +  V+   +    A  + 
Sbjct: 128 PEESYGFL----RTADGRDVYFHANAVLRGLFSRLRVGRAVRF--VETRGDEGPQASTVD 181

Query: 72  LVP 74
            +P
Sbjct: 182 PLP 184


>gi|111052677|gb|ABH03579.1| CspA [Neisseria gonorrhoeae]
          Length = 192

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G +KWY+ +K +GFI      E G + F  +SA       +   GQ+V ++  ++   
Sbjct: 3  GFVKWYSYEKDFGFI----FGEDGHEYFFRKSA------GSDIPGQIVNFEPFEHSRG 50


>gi|319941417|ref|ZP_08015745.1| polyribonucleotide nucleotidyltransferase [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805037|gb|EFW01867.1| polyribonucleotide nucleotidyltransferase [Sutterella
           wadsworthensis 3_1_45B]
          Length = 707

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I        G D  LH S +A+  +      L EGQ V    ++ D  G+
Sbjct: 642 FGAIVQLLP---GKDGLLHISQIANERVNAVSDYLKEGQKVRVKVIEADEKGR 691


>gi|320353591|ref|YP_004194930.1| Cold-shock protein DNA-binding protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320122093|gb|ADW17639.1| Cold-shock protein DNA-binding protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 182

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
           YG IT    T    D++ HR++V +     LT G  V +   ++   G   A N+K+V
Sbjct: 131 YGTIT----TSDDRDIYFHRNSVLNTNFDALTIGTAVQFR-EEDGDKGPQ-ARNVKVV 182


>gi|220930736|ref|YP_002507645.1| transcription termination factor Rho [Clostridium cellulolyticum
           H10]
 gi|220001064|gb|ACL77665.1| transcription termination factor Rho [Clostridium cellulolyticum
           H10]
          Length = 690

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGF+  E       DV++  S +   GL  
Sbjct: 328 GYGFLRSENYLSGPKDVYVSPSQIRRFGLKT 358


>gi|240112925|ref|ZP_04727415.1| CspA [Neisseria gonorrhoeae MS11]
 gi|268599002|ref|ZP_06133169.1| CspA [Neisseria gonorrhoeae MS11]
 gi|15004539|gb|AAK77142.1|AF374415_5 CspA [Neisseria gonorrhoeae]
 gi|58891396|gb|AAW83084.1| CspA [Neisseria gonorrhoeae]
 gi|268583133|gb|EEZ47809.1| CspA [Neisseria gonorrhoeae MS11]
          Length = 192

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G +KWY+ +K +GFI      E G + F  +SA       +   GQ+V ++  ++   
Sbjct: 3  GFVKWYSYEKDFGFI----FGEDGHEYFFRKSA------GSDIPGQIVNFEPFEHSRG 50


>gi|260440507|ref|ZP_05794323.1| CspA [Neisseria gonorrhoeae DGI2]
 gi|291043812|ref|ZP_06569528.1| cold shock protein cspA [Neisseria gonorrhoeae DGI2]
 gi|291012275|gb|EFE04264.1| cold shock protein cspA [Neisseria gonorrhoeae DGI2]
          Length = 192

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G +KWY+ +K +GFI      E G + F  +SA       +   GQ+V ++  ++   
Sbjct: 3  GFVKWYSYEKDFGFI----FGEDGHEYFFRKSA------GSDIPGQIVNFEPFEHSRG 50


>gi|194098626|ref|YP_002001688.1| CspA [Neisseria gonorrhoeae NCCP11945]
 gi|193933916|gb|ACF29740.1| CspA [Neisseria gonorrhoeae NCCP11945]
          Length = 195

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G +KWY+ +K +GFI      E G + F  +SA       +   GQ+V ++  ++   
Sbjct: 3  GFVKWYSYEKDFGFI----FGEDGHEYFFRKSA------GSDIPGQIVNFEPFEHSRG 50


>gi|329914598|ref|ZP_08276135.1| 3'-to-5' exoribonuclease RNase R [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545098|gb|EGF30392.1| 3'-to-5' exoribonuclease RNase R [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 180

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           G+GF+ P+   + GDD+FL    +       L  G  V    +  D  G+     +++V 
Sbjct: 82  GFGFLVPD---DGGDDLFLSEKEMQ----KVLH-GDRVKARIIGTDRRGRPEGTIVEVVS 133

Query: 75  KS 76
           ++
Sbjct: 134 RA 135


>gi|83591218|ref|YP_431227.1| transcription termination factor Rho [Moorella thermoacetica ATCC
           39073]
 gi|83574132|gb|ABC20684.1| transcription termination factor Rho [Moorella thermoacetica ATCC
           39073]
          Length = 429

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           GYGF+ P G   SGDD+++  S +    L     G  V
Sbjct: 71  GYGFLRPFGYLASGDDIYISASQIRRFDLRT---GDKV 105


>gi|326202284|ref|ZP_08192153.1| transcription termination factor Rho [Clostridium papyrosolvens DSM
           2782]
 gi|325987402|gb|EGD48229.1| transcription termination factor Rho [Clostridium papyrosolvens DSM
           2782]
          Length = 691

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGF+  E       DV++  S +   GL  
Sbjct: 329 GYGFLRSENYLSGPKDVYVSPSQIRRFGLKT 359


>gi|261854978|ref|YP_003262261.1| ribonuclease R [Halothiobacillus neapolitanus c2]
 gi|261835447|gb|ACX95214.1| ribonuclease R [Halothiobacillus neapolitanus c2]
          Length = 803

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           G+GF+ P+   + GDDVF     ++   +  L  G          D  G+     ++++ 
Sbjct: 100 GFGFLVPD---DGGDDVF-----LSPRVMRALLNGDRAVVQVTGLDRRGRREGNLVEVIE 151

Query: 75  KS 76
           ++
Sbjct: 152 RA 153


>gi|237747634|ref|ZP_04578114.1| exoribonuclease RNAse R [Oxalobacter formigenes OXCC13]
 gi|229378996|gb|EEO29087.1| exoribonuclease RNAse R [Oxalobacter formigenes OXCC13]
          Length = 793

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           GYGF+ PE   E GDD+F     ++   +  +     V    V  D  G+     + ++ 
Sbjct: 84  GYGFVIPE---EGGDDIF-----LSENEMHKVMHNDKVQVRVVNVDKRGRPEGLIVSVLT 135

Query: 75  KSS 77
           ++ 
Sbjct: 136 RAH 138


>gi|240128234|ref|ZP_04740895.1| CspA [Neisseria gonorrhoeae SK-93-1035]
 gi|268686627|ref|ZP_06153489.1| CspA [Neisseria gonorrhoeae SK-93-1035]
 gi|268626911|gb|EEZ59311.1| CspA [Neisseria gonorrhoeae SK-93-1035]
          Length = 192

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%)

Query: 5  GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62
          G +KWY+ +K +GFI      E G + F  +SA       +   GQ+V ++  ++   
Sbjct: 3  GFVKWYSYEKDFGFI----FGEDGHEYFFRKSA------GSDIPGQIVNFEPFEHSRG 50


>gi|332980855|ref|YP_004462296.1| transcription termination factor Rho [Mahella australiensis 50-1
           BON]
 gi|332698533|gb|AEE95474.1| transcription termination factor Rho [Mahella australiensis 50-1
           BON]
          Length = 601

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
           GYGF+  E       DV++ +S +   GL     G LV     Q     K+ A
Sbjct: 232 GYGFLRSENYLPGNKDVYISQSQIRRFGLRT---GDLVKGKTRQAKEGEKFQA 281


>gi|295133350|ref|YP_003584026.1| cold shock protein, DNA-binding protein [Zunongwangia profunda
           SM-A87]
 gi|294981365|gb|ADF51830.1| cold shock protein, putative DNA-binding protein [Zunongwangia
           profunda SM-A87]
          Length = 143

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 4   RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
           +G++  +  +KGYGFI      +SGD +F+H   +    L  ++E   V +   Q  A G
Sbjct: 83  KGTVISFFIEKGYGFI---KDQKSGDHIFVHVKDL----LDEISEKDQVFF-VKQKTAKG 134

Query: 64  KYS 66
             +
Sbjct: 135 AKA 137


>gi|300113400|ref|YP_003759975.1| ribosomal subunit interface protein [Nitrosococcus watsonii C-113]
 gi|299539337|gb|ADJ27654.1| ribosomal subunit interface protein [Nitrosococcus watsonii C-113]
          Length = 182

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
           YG I     T  G +++ HR+++ + G   L  G  V +   + D   + S  ++K
Sbjct: 130 YGKIE----TIDGREIYFHRNSILNGGFKELKVGNEVHFIEEEGDLGPQASTVHIK 181


>gi|149907740|ref|ZP_01896487.1| putative Exoribonuclease R [Moritella sp. PE36]
 gi|149809410|gb|EDM69339.1| putative Exoribonuclease R [Moritella sp. PE36]
          Length = 841

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           G+GF  P+   + G D+F+   ++    +  L  G  +    V+ +  G+  A  ++L+ 
Sbjct: 95  GFGFFRPD---DGGKDLFI---SIRQ--MSTLFHGDRILAQPVKEEFKGRKEARFVRLLD 146

Query: 75  KS 76
             
Sbjct: 147 AE 148


>gi|326338225|gb|EGD62054.1| Cold shock protein CspD [Escherichia coli O157:H7 str. 1125]
          Length = 39

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 40 SAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
            G   L  GQ V +D  Q    G +++  + +
Sbjct: 1  MDGYRTLKAGQSVQFDVHQG-PKGNHASVIVPV 32


>gi|327438855|dbj|BAK15220.1| exoribonuclease R [Solibacillus silvestris StLB046]
          Length = 802

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
             KG+GF+ PE   +  DD+F+    V  A    L E   V    ++  +  +     +K
Sbjct: 80  NAKGFGFVAPE--EQGMDDIFIPAHEVNGA----LNE-DTVLVRVLKEQSGDRREGTVVK 132

Query: 72  LVPKS 76
           +V +S
Sbjct: 133 IVERS 137


>gi|323486281|ref|ZP_08091607.1| hypothetical protein HMPREF9474_03358 [Clostridium symbiosum
           WAL-14163]
 gi|323693928|ref|ZP_08108115.1| transcription termination factor Rho [Clostridium symbiosum
           WAL-14673]
 gi|323400391|gb|EGA92763.1| hypothetical protein HMPREF9474_03358 [Clostridium symbiosum
           WAL-14163]
 gi|323502025|gb|EGB17900.1| transcription termination factor Rho [Clostridium symbiosum
           WAL-14673]
          Length = 605

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           G+GFI  E      +DV++  S +    L     G     D V+     K + E
Sbjct: 244 GFGFIRCENFLPGENDVYVAPSQIRRFNLKT---G-----DIVRGSRRVKTATE 289


>gi|294340865|emb|CAZ89260.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Thiomonas sp. 3As]
          Length = 719

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S +A+  +      L EGQ V    ++ D  G+
Sbjct: 644 GKDGLLHISQIANERINKVSDFLQEGQKVRVKVIETDDKGR 684


>gi|296136710|ref|YP_003643952.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
           K12]
 gi|295796832|gb|ADG31622.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
           K12]
          Length = 719

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S +A+  +      L EGQ V    ++ D  G+
Sbjct: 644 GKDGLLHISQIANERINKVSDFLQEGQKVRVKVIETDDKGR 684


>gi|77919746|ref|YP_357561.1| exoribonuclease RNase R [Pelobacter carbinolicus DSM 2380]
 gi|77545829|gb|ABA89391.1| RNAse R [Pelobacter carbinolicus DSM 2380]
          Length = 720

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           GYGF+ PE +     DVF     + +  +  + +G  V    VQ  + G Y    L+++ 
Sbjct: 79  GYGFVIPEAA--GQADVF-----IPARYMREVMDGDRVAVR-VQRSSRGGYEGRVLRVLS 130

Query: 75  KSSN 78
           ++  
Sbjct: 131 RAHQ 134


>gi|325660742|ref|ZP_08149370.1| transcription termination factor Rho [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085534|ref|ZP_08334618.1| transcription termination factor Rho [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472816|gb|EGC76026.1| transcription termination factor Rho [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330407421|gb|EGG86923.1| transcription termination factor Rho [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 441

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGFI  +      +DV++  S +    L  
Sbjct: 82  GYGFIRSDNYLPGENDVYVSPSQIRRFNLKT 112


>gi|326801850|ref|YP_004319669.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
 gi|326552614|gb|ADZ80999.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21]
          Length = 50

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 22/71 (30%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
          +  G ++ +N  +G+GF  P+                       + E   VTY  VQ   
Sbjct: 1  MQEGIVRIFNGSRGFGFTIPQRGK--------------------IHENDQVTYKVVQRSK 40

Query: 62 NGKYSAENLKL 72
              SA  LK+
Sbjct: 41 G--LSAIELKI 49


>gi|292670375|ref|ZP_06603801.1| ribonuclease R [Selenomonas noxia ATCC 43541]
 gi|292647967|gb|EFF65939.1| ribonuclease R [Selenomonas noxia ATCC 43541]
          Length = 900

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 14  KGYGFITPEG-STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64
           KG+GFI P+    E   DVF+       A L     G  V      +++ G+
Sbjct: 83  KGFGFIIPDARENEEETDVFV-----PGAALATAMHGDRVVARVTPSESPGR 129


>gi|218290978|ref|ZP_03495026.1| ribonuclease R [Alicyclobacillus acidocaldarius LAA1]
 gi|218239060|gb|EED06264.1| ribonuclease R [Alicyclobacillus acidocaldarius LAA1]
          Length = 896

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS---AEN 69
            +GYGF+ P+   E   D+++ +SA+  A       G  V     +    G  +    E 
Sbjct: 71  ARGYGFVIPDDEAE--ADIYIPQSALNGA-----MSGDRVLVRLREERGKGAQAHREGEI 123

Query: 70  LKLVPK 75
           +K++ +
Sbjct: 124 VKILER 129


>gi|20806667|ref|NP_621838.1| transcription termination factor Rho [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515117|gb|AAM23442.1| Transcription termination factor [Thermoanaerobacter tengcongensis
           MB4]
          Length = 488

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           G+GF+  E  T+   D+++ +S +   GL     G  V
Sbjct: 131 GFGFLRVENFTQGPKDIYISQSQIRRFGLKV---GDKV 165


>gi|120555300|ref|YP_959651.1| ribonuclease R [Marinobacter aquaeolei VT8]
 gi|120325149|gb|ABM19464.1| RNAse R [Marinobacter aquaeolei VT8]
          Length = 815

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           G+GF+ P+   + G D+F   +A        +  G  V     Q D  G+   + ++++ 
Sbjct: 101 GFGFLIPD---DGGSDLF--LTARQM---RQVFHGDRVAARVDQVDDRGRREGKIVEVLE 152

Query: 75  KSSN 78
             ++
Sbjct: 153 HRTS 156


>gi|113867066|ref|YP_725555.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha H16]
 gi|122947022|sp|Q0KCT4|PNP_RALEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113525842|emb|CAJ92187.1| polyribonucleotide nucleotidyltransferase [Ralstonia eutropha H16]
          Length = 723

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 646 GKDGLLHISEIVNERVKDIKDWLKEGQQVRVKLIQADEKGR 686


>gi|238758049|ref|ZP_04619230.1| Cold-shock DNA-binding domain protein [Yersinia aldovae ATCC
          35236]
 gi|238703803|gb|EEP96339.1| Cold-shock DNA-binding domain protein [Yersinia aldovae ATCC
          35236]
          Length = 159

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N      SA  
Sbjct: 8  FFEDKGFGFIT----DENGDNRYFHI--IKVANPEMIKKGAEVTFEPTTNTKG--LSAFA 59

Query: 70 LKLVPKS 76
          +K+  +S
Sbjct: 60 VKVAIES 66


>gi|254479468|ref|ZP_05092794.1| Rho termination factor, RNA-binding domain family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034591|gb|EEB75339.1| Rho termination factor, RNA-binding domain family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 325

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           G+GF+  E  T+   D+++ +S +   GL     G  V
Sbjct: 118 GFGFLRVENFTQGPKDIYISQSQIRRFGLKV---GDKV 152


>gi|194289155|ref|YP_002005062.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
           LMG 19424]
 gi|226702643|sp|B3R3W3|PNP_CUPTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193222990|emb|CAQ68995.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 723

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 646 GKDGLLHISEIVNERVKDIKDWLKEGQQVRVKLIQADEKGR 686


>gi|94309868|ref|YP_583078.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
           metallidurans CH34]
 gi|187611276|sp|Q1LPW7|PNP_RALME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|93353720|gb|ABF07809.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
           metallidurans CH34]
          Length = 725

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S + +  + +    L EGQ V    +Q D  G+
Sbjct: 646 GKDGLLHISEIVNERVKDIKDWLKEGQQVRVKLIQADEKGR 686


>gi|303239255|ref|ZP_07325784.1| 5-methyltetrahydropteroyltriglutamate/homocysteine
           S-methyltransferase [Acetivibrio cellulolyticus CD2]
 gi|302593300|gb|EFL63019.1| 5-methyltetrahydropteroyltriglutamate/homocysteine
           S-methyltransferase [Acetivibrio cellulolyticus CD2]
          Length = 761

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 8   KWYNPDKGYGFITPEGSTE-----SGDDVFLHRSAVASAGLFN 45
           KW+N +  Y +I P    +     +G+D+F + S    AG+  
Sbjct: 114 KWFNTN--YHYIVPAIDDDTQIKLNGEDIFAYYSEALDAGIKT 154


>gi|327285408|ref|XP_003227425.1| PREDICTED: protein lin-28 homolog A-like [Anolis carolinensis]
          Length = 151

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 36 SAVASAGLFNLTEGQLVTYDYVQNDAN 62
          S +   G  +L EG+ V + + ++   
Sbjct: 20 SKLHMEGFRSLKEGEAVEFTFKKSSKG 46


>gi|85713281|ref|ZP_01044304.1| Exoribonuclease R [Idiomarina baltica OS145]
 gi|85692899|gb|EAQ30874.1| Exoribonuclease R [Idiomarina baltica OS145]
          Length = 785

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 15  GYGFITPEGSTESGDDVFL-HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73
           G+GF  PE   E GDD+F+ H           L  G +V       D  GK     ++++
Sbjct: 95  GFGFCQPE---EGGDDIFIPHH---QM--YSVLH-GDVVLVKVSGQDRKGKREGRVVRVI 145

Query: 74  PKSSN 78
               N
Sbjct: 146 EPRDN 150


>gi|224081663|ref|XP_002192271.1| PREDICTED: lin-28 homolog [Taeniopygia guttata]
          Length = 134

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 36 SAVASAGLFNLTEGQLVTYDYVQNDAN 62
          S +   G  +L EG+ V + + ++   
Sbjct: 3  SKLHMEGFRSLKEGEAVEFTFKKSSKG 29


>gi|77165898|ref|YP_344423.1| sigma 54 modulation protein/ribosomal protein S30EA [Nitrosococcus
           oceani ATCC 19707]
 gi|254434884|ref|ZP_05048392.1| ribosomal subunit interface protein [Nitrosococcus oceani AFC27]
 gi|76884212|gb|ABA58893.1| Sigma 54 modulation protein/ribosomal protein S30EA [Nitrosococcus
           oceani ATCC 19707]
 gi|207091217|gb|EDZ68488.1| ribosomal subunit interface protein [Nitrosococcus oceani AFC27]
          Length = 182

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
           YG I     T  G +++ H++++ + G   L  G  V +   + D   + S  ++K
Sbjct: 130 YGKIE----TIDGREIYFHKNSILNGGFKELKVGNEVHFIEEEGDLGPQASTVHIK 181


>gi|302543102|ref|ZP_07295444.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
          53653]
 gi|302460720|gb|EFL23813.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
          53653]
          Length = 77

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQND--ANGKYSAENLKLVPKSS 77
          H S +  AG   L+ GQ V  ++       +G      +++VP++ 
Sbjct: 30 HFSHIEMAGFATLSPGQHVELEWEAPGFEQDGYEY-RAVRIVPRTG 74


>gi|315651449|ref|ZP_07904472.1| transcription termination factor [Eubacterium saburreum DSM 3986]
 gi|315486269|gb|EFU76628.1| transcription termination factor [Eubacterium saburreum DSM 3986]
          Length = 579

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
           G+GFI  E      +DV++  + +   GL     G +V+
Sbjct: 216 GFGFIRCENFLPGDNDVYVAPTQIKKFGLRT---GDVVS 251


>gi|301384793|ref|ZP_07233211.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          Max13]
 gi|302060713|ref|ZP_07252254.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          K40]
 gi|302131941|ref|ZP_07257931.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          NCPPB 1108]
          Length = 74

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +V  G +  Y+  KG+GFI  E     G DVF     V    +  +  G +V ++  +  
Sbjct: 8  LVDTGFVNSYDSFKGFGFIRREK----GRDVFFFYDDVE-DVVNGIAMGDVVRFEVHEEP 62

Query: 61 ANGK 64
             +
Sbjct: 63 KGPR 66


>gi|82702034|ref|YP_411600.1| putative sigma 54 modulation protein/ribosomal protein S30EA
           [Nitrosospira multiformis ATCC 25196]
 gi|82410099|gb|ABB74208.1| putative sigma 54 modulation protein/ribosomal protein S30EA
           [Nitrosospira multiformis ATCC 25196]
          Length = 195

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54
           P++GYGF+     T SG +++ HR  +A+     L EG  V +
Sbjct: 121 PEEGYGFVE----TSSGQELYFHRENLANNNFEQLEEGSEVQF 159


>gi|238917370|ref|YP_002930887.1| transcription termination factor Rho [Eubacterium eligens ATCC
           27750]
 gi|238872730|gb|ACR72440.1| transcription termination factor Rho [Eubacterium eligens ATCC
           27750]
          Length = 485

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           GYGFI  E      +DV++  S +    L     G     D +Q     K S E
Sbjct: 126 GYGFIRCENFLPGENDVYVSPSQIRKFNLKT---G-----DIIQGPKRMKTSGE 171


>gi|167461762|ref|ZP_02326851.1| ribonuclease R [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384484|ref|ZP_08058166.1| ribonuclease R-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150694|gb|EFX44169.1| ribonuclease R-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 834

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           +   + YGF+ P+       D+F     + +A      +GQ V    VQ    G+ +AE
Sbjct: 142 FQQHESYGFVLPDDRRVQ-RDIF-----IPAAAFKGAVDGQKVVVKIVQ-YPEGRAAAE 193


>gi|257066263|ref|YP_003152519.1| ribonuclease R [Anaerococcus prevotii DSM 20548]
 gi|256798143|gb|ACV28798.1| ribonuclease R [Anaerococcus prevotii DSM 20548]
          Length = 708

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
           +  +KG+GF+ P+  +  G+D+F     +A            V  + +    +GK 
Sbjct: 142 FQKNKGFGFVIPDDRSY-GEDIF-----IAEKFFNKAKNKDKVVVEIINYPKDGKP 191


>gi|332187913|ref|ZP_08389646.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
 gi|332012074|gb|EGI54146.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
          Length = 773

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 27  SGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
            G D  +H S + +  +      L+EGQ V    ++ D  GK
Sbjct: 642 GGKDGLVHVSEIKNERVEKVSDVLSEGQEVKVKVLEIDPRGK 683


>gi|226314809|ref|YP_002774705.1| ribonuclease R [Brevibacillus brevis NBRC 100599]
 gi|226097759|dbj|BAH46201.1| ribonuclease R [Brevibacillus brevis NBRC 100599]
          Length = 840

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 9/63 (14%)

Query: 14  KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG-KYSAENLKL 72
           KG+GF+ PE  T   DDV++H + +  A    L  G  V +  V+ +A G +   + +++
Sbjct: 78  KGFGFVIPE--TPDSDDVYVHANDMNGA----LH-GDTV-FVRVEKEAGGNRLEGQIIRI 129

Query: 73  VPK 75
           V +
Sbjct: 130 VER 132


>gi|323704810|ref|ZP_08116387.1| transcription termination factor Rho [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535736|gb|EGB25510.1| transcription termination factor Rho [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 613

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           GYGF+  +   +   D+++ +S +   GL     G  V
Sbjct: 256 GYGFLRVDNFIQGNKDIYISQSQIRRFGLKV---GDKV 290


>gi|304440569|ref|ZP_07400455.1| ribonuclease R [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370945|gb|EFM24565.1| ribonuclease R [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 705

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           +   K +GF+ P+   + G D+F     +    +    +GQ V
Sbjct: 136 FQSSKDFGFVVPDD-KKVGTDIF-----IRGEDINGAEDGQKV 172


>gi|295697776|ref|YP_003591014.1| transcription termination factor Rho [Bacillus tusciae DSM 2912]
 gi|295413378|gb|ADG07870.1| transcription termination factor Rho [Bacillus tusciae DSM 2912]
          Length = 418

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          GYGF+ P G   S +D+++  S +    L     G  V+
Sbjct: 61 GYGFLRPIGYLPSNEDIYVAASQIRRFDLRT---GDRVS 96


>gi|319789562|ref|YP_004151195.1| ribonuclease R [Thermovibrio ammonificans HB-1]
 gi|317114064|gb|ADU96554.1| ribonuclease R [Thermovibrio ammonificans HB-1]
          Length = 716

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           G+GF+ P    + G  VF+   ++A A       G +V  + V+    G+   + + ++ 
Sbjct: 89  GFGFVDP---IDGGKGVFVPGRSMAGA-----MNGDIVAVEIVKEGREGRREGKIVSVIE 140

Query: 75  KS 76
           ++
Sbjct: 141 RA 142


>gi|331082611|ref|ZP_08331734.1| transcription termination factor Rho [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400230|gb|EGG79872.1| transcription termination factor Rho [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 451

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGFI  +      +DV++  S +    L  
Sbjct: 92  GYGFIRSDNYLPGENDVYVSPSQIRRFNLKT 122


>gi|260589195|ref|ZP_05855108.1| transcription termination factor Rho [Blautia hansenii DSM 20583]
 gi|260540276|gb|EEX20845.1| transcription termination factor Rho [Blautia hansenii DSM 20583]
          Length = 451

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGFI  +      +DV++  S +    L  
Sbjct: 92  GYGFIRSDNYLPGENDVYVSPSQIRRFNLKT 122


>gi|195997971|ref|XP_002108854.1| hypothetical protein TRIADDRAFT_52268 [Trichoplax adhaerens]
 gi|190589630|gb|EDV29652.1| hypothetical protein TRIADDRAFT_52268 [Trichoplax adhaerens]
          Length = 693

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 14  KG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
           KG YGFI          + F H + V+ A       G  V +  +Q   NGK  A  ++ 
Sbjct: 584 KGDYGFIEYHEGEF--KNFFFHMNDVSRAD-ATFKVGDTVQF-VIQQQRNGKTHAIQIRT 639

Query: 73  VPKSSN 78
           +     
Sbjct: 640 ISSKGE 645


>gi|291562234|emb|CBL41050.1| transcription termination factor Rho [butyrate-producing bacterium
           SS3/4]
          Length = 607

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           G+GFI  E      +DV++  S +    +     G     D ++     K + E
Sbjct: 246 GFGFIRCENFLPGDNDVYVAPSQIRRFNMKT---G-----DIIRGSRRVKSATE 291


>gi|113474604|ref|YP_720665.1| hypothetical protein Tery_0765 [Trichodesmium erythraeum IMS101]
 gi|110165652|gb|ABG50192.1| Tetratricopeptide TPR_2 [Trichodesmium erythraeum IMS101]
          Length = 1180

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 17   GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76
            G I+P+   +   D+F +   + +  +  LTEG+LV  +  +   NGK  A+ + ++ + 
Sbjct: 1121 GRISPD---DGTLDIFFNDKYMNTESISQLTEGELVEVEVKE--KNGKRYAKQISVIEEE 1175

Query: 77   SN 78
             +
Sbjct: 1176 ED 1177


>gi|221632366|ref|YP_002521587.1| transcription termination factor Rho [Thermomicrobium roseum DSM
           5159]
 gi|221156873|gb|ACM06000.1| transcription termination factor Rho [Thermomicrobium roseum DSM
           5159]
          Length = 434

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLF 44
           G+GF+  E      +DV++ +S +   GL 
Sbjct: 80  GFGFLRGERYLPGPNDVYVSQSQIRRFGLR 109


>gi|28871079|ref|NP_793698.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|213969685|ref|ZP_03397820.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          T1]
 gi|28854329|gb|AAO57393.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|213925493|gb|EEB59053.1| cold shock domain family protein [Pseudomonas syringae pv. tomato
          T1]
          Length = 72

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 1  MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60
          +V  G +  Y+  KG+GFI  E     G DVF     V    +  +  G +V ++  +  
Sbjct: 6  LVDTGFVNSYDSFKGFGFIRREK----GRDVFFFYDDVE-DVVNGIAMGDVVRFEVHEEP 60

Query: 61 ANGK 64
             +
Sbjct: 61 KGPR 64


>gi|256751365|ref|ZP_05492244.1| transcription termination factor Rho [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749747|gb|EEU62772.1| transcription termination factor Rho [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 508

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           GYGF+  E   +   D+++ +S +   GL     G  V
Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFGLKV---GDKV 185


>gi|297543671|ref|YP_003675973.1| transcription termination factor Rho [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841446|gb|ADH59962.1| transcription termination factor Rho [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 508

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           GYGF+  E   +   D+++ +S +   GL     G  V
Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFGLKV---GDKV 185


>gi|167038495|ref|YP_001666073.1| transcription termination factor Rho [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167038762|ref|YP_001661747.1| transcription termination factor Rho [Thermoanaerobacter sp. X514]
 gi|300913653|ref|ZP_07130970.1| transcription termination factor Rho [Thermoanaerobacter sp. X561]
 gi|307723332|ref|YP_003903083.1| transcription termination factor Rho [Thermoanaerobacter sp. X513]
 gi|320116891|ref|YP_004187050.1| transcription termination factor Rho [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166853002|gb|ABY91411.1| transcription termination factor Rho [Thermoanaerobacter sp. X514]
 gi|166857329|gb|ABY95737.1| transcription termination factor Rho [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300890338|gb|EFK85483.1| transcription termination factor Rho [Thermoanaerobacter sp. X561]
 gi|307580393|gb|ADN53792.1| transcription termination factor Rho [Thermoanaerobacter sp. X513]
 gi|319929982|gb|ADV80667.1| transcription termination factor Rho [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 508

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           GYGF+  E   +   D+++ +S +   GL     G  V
Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFGLKV---GDKV 185


>gi|256004830|ref|ZP_05429804.1| ribonuclease R [Clostridium thermocellum DSM 2360]
 gi|255991140|gb|EEU01248.1| ribonuclease R [Clostridium thermocellum DSM 2360]
 gi|316941093|gb|ADU75127.1| ribonuclease R [Clostridium thermocellum DSM 1313]
          Length = 757

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           +   K +GF+ P+    SG D+F+ +  +  A       GQ V  + V
Sbjct: 142 FESSKYFGFVVPDDPRISG-DIFIPKDEINGA-----KSGQKVVAEIV 183


>gi|307265651|ref|ZP_07547204.1| transcription termination factor Rho [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326389246|ref|ZP_08210814.1| transcription termination factor Rho [Thermoanaerobacter
           ethanolicus JW 200]
 gi|306919295|gb|EFN49516.1| transcription termination factor Rho [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325994609|gb|EGD53033.1| transcription termination factor Rho [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 508

 Score = 34.5 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           GYGF+  E   +   D+++ +S +   GL     G  V
Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFGLKV---GDKV 185


>gi|47563677|dbj|BAD20295.1| cold shock protein like [Pseudomonas fluorescens]
          Length = 18

 Score = 34.5 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 2  VHRGSIKWYNPDKGY 16
             G++KW+N +KG+
Sbjct: 4  RQTGTVKWFNDEKGF 18


>gi|223365689|pdb|2KCM|A Chain A, Solution Nmr Structure Of The N-Terminal Ob-Domain Of
          So_1732 From Shewanella Oneidensis. Northeast
          Structural Genomics Consortium Target Sor210a
          Length = 74

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQND 60
          +G +  Y   K YGFI  +     G+  FLH S +      G   L +G +V +D     
Sbjct: 2  KGKVVSYLAAKKYGFIQGD----DGESYFLHFSELLDKKDEG--KLVKGSMVHFDPTPTP 55

Query: 61 ANGKYSAENLKL 72
                A +L L
Sbjct: 56 KGLAAKAISLPL 67


>gi|289577384|ref|YP_003476011.1| transcription termination factor Rho [Thermoanaerobacter italicus
           Ab9]
 gi|289527097|gb|ADD01449.1| transcription termination factor Rho [Thermoanaerobacter italicus
           Ab9]
          Length = 508

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           GYGF+  E   +   D+++ +S +   GL     G  V
Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFGLKV---GDKV 185


>gi|325263705|ref|ZP_08130438.1| transcription termination factor Rho [Clostridium sp. D5]
 gi|324030743|gb|EGB92025.1| transcription termination factor Rho [Clostridium sp. D5]
          Length = 449

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGFI  E      +DV++  S +    L  
Sbjct: 90  GYGFIRCENYLPGENDVYVSPSQIRRFNLKT 120


>gi|154502578|ref|ZP_02039638.1| hypothetical protein RUMGNA_00391 [Ruminococcus gnavus ATCC 29149]
 gi|153796770|gb|EDN79190.1| hypothetical protein RUMGNA_00391 [Ruminococcus gnavus ATCC 29149]
          Length = 445

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGFI  E      +DV++  S +    L  
Sbjct: 86  GYGFIRCENYLPGENDVYVSPSQIRRFNLKT 116


>gi|125972670|ref|YP_001036580.1| ribonuclease R [Clostridium thermocellum ATCC 27405]
 gi|281416859|ref|ZP_06247879.1| ribonuclease R [Clostridium thermocellum JW20]
 gi|125712895|gb|ABN51387.1| RNAse R [Clostridium thermocellum ATCC 27405]
 gi|281408261|gb|EFB38519.1| ribonuclease R [Clostridium thermocellum JW20]
          Length = 757

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57
           +   K +GF+ P+    SG D+F+ +  +  A       GQ V  + V
Sbjct: 142 FESSKYFGFVVPDDPRISG-DIFIPKDEINGA-----KSGQKVVAEIV 183


>gi|322834329|ref|YP_004214356.1| Cold-shock protein DNA-binding protein [Rahnella sp. Y9602]
 gi|321169530|gb|ADW75229.1| Cold-shock protein DNA-binding protein [Rahnella sp. Y9602]
          Length = 159

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
          W+  DKG+GFI      E+GD+ + H   +  A    + +   VT++   N+     SA 
Sbjct: 8  WF-EDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTNNKG--LSAF 58

Query: 69 NLKLVPKS 76
           +K+ P+S
Sbjct: 59 AVKVEPES 66


>gi|313231855|emb|CBY08967.1| unnamed protein product [Oikopleura dioica]
          Length = 213

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
           G++  ++  KG+GF+  +   E G   F H S V S  +    EG +V Y  +       
Sbjct: 115 GTVSAFSRTKGHGFLNSD---EDGKQEFFHVSDVVSQIVP--KEGDVVKYRVIPIPPKYE 169

Query: 64  KYSAENLKLVPKS 76
           KY A  + ++ + 
Sbjct: 170 KYQAVQVTIMNEE 182


>gi|239628693|ref|ZP_04671724.1| transcription termination factor Rho [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518839|gb|EEQ58705.1| transcription termination factor Rho [Clostridiales bacterium
           1_7_47FAA]
          Length = 593

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           G+GFI  E      +DV++  S +    L     G     D +  +   K + E
Sbjct: 232 GFGFIRCENFLPGENDVYVAPSQIRRFNLKT---G-----DIIAGNRRVKSATE 277


>gi|227499726|ref|ZP_03929826.1| ribonuclease R [Anaerococcus tetradius ATCC 35098]
 gi|227218193|gb|EEI83456.1| ribonuclease R [Anaerococcus tetradius ATCC 35098]
          Length = 708

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 10  YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
           Y  +KG+GF+ P+  +  GDD+F+       A          V  + +    NGK   + 
Sbjct: 142 YQKNKGFGFVIPDDRSF-GDDIFIGEKNSLRAKNK-----DKVVVEIIDYPKNGKPEGKI 195

Query: 70  LKLV 73
           ++++
Sbjct: 196 IEII 199


>gi|301336862|ref|ZP_07225064.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum MopnTet14]
          Length = 692

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASA 41
          P KG+GF++P+       D+F+  S +  A
Sbjct: 27 PKKGFGFVSPDQPDLYPFDIFVPASDLKGA 56


>gi|225386741|ref|ZP_03756505.1| hypothetical protein CLOSTASPAR_00489 [Clostridium asparagiforme
           DSM 15981]
 gi|225047152|gb|EEG57398.1| hypothetical protein CLOSTASPAR_00489 [Clostridium asparagiforme
           DSM 15981]
          Length = 612

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           G+GFI  E      +DV++  S +    L     G     D +  +   K + E
Sbjct: 251 GFGFIRCENFLPGENDVYVAPSQIRRFNLKT---G-----DIISGNRRVKSATE 296


>gi|160937849|ref|ZP_02085208.1| hypothetical protein CLOBOL_02741 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439288|gb|EDP17041.1| hypothetical protein CLOBOL_02741 [Clostridium bolteae ATCC
           BAA-613]
          Length = 565

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           G+GFI  E      +DV++  S +    L     G     D +  +   K + E
Sbjct: 204 GFGFIRCENFLPGENDVYVAPSQIRRFNLKT---G-----DIIVGNRRVKSATE 249


>gi|15835291|ref|NP_297050.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Nigg]
 gi|270285465|ref|ZP_06194859.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Nigg]
 gi|270289476|ref|ZP_06195778.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Weiss]
 gi|14195179|sp|Q9PK00|RNR_CHLMU RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
          protein homolog
 gi|8163286|gb|AAF73588.1| exoribonuclease, VacB/Rnb family [Chlamydia muridarum Nigg]
          Length = 692

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASA 41
          P KG+GF++P+       D+F+  S +  A
Sbjct: 27 PKKGFGFVSPDQPDLYPFDIFVPASDLKGA 56


>gi|330828260|ref|YP_004391212.1| ribonuclease R [Aeromonas veronii B565]
 gi|328803396|gb|AEB48595.1| Ribonuclease R [Aeromonas veronii B565]
          Length = 797

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74
           G+GF+ PEG    G D++L+   +       L  G  V     + D  G+  A  ++L+ 
Sbjct: 96  GFGFLRPEG---GGPDLYLNNREMQR-----LMHGDYVLVQPTEIDRKGRQEARLVRLLK 147


>gi|302874266|ref|YP_003842899.1| hypothetical protein Clocel_1382 [Clostridium cellulovorans 743B]
 gi|307689470|ref|ZP_07631916.1| hypothetical protein Ccel74_15036 [Clostridium cellulovorans 743B]
 gi|302577123|gb|ADL51135.1| hypothetical protein Clocel_1382 [Clostridium cellulovorans 743B]
          Length = 150

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 41  AGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77
           +G   + EGQ VT D  + +   K  AE++K +P ++
Sbjct: 77  SGFVTVIEGQRVTNDIAETNTKIKEVAESIKKLPTTT 113


>gi|103486036|ref|YP_615597.1| polynucleotide phosphorylase/polyadenylase [Sphingopyxis alaskensis
           RB2256]
 gi|123380103|sp|Q1GVQ8|PNP_SPHAL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|98976113|gb|ABF52264.1| 3' exoribonuclease [Sphingopyxis alaskensis RB2256]
          Length = 771

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 27  SGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
            G D  +H S + +  +      L+EGQ V    ++ D  GK
Sbjct: 644 GGKDGLVHVSEIRNERVEKVADVLSEGQDVKVKVLEIDPRGK 685


>gi|323691603|ref|ZP_08105866.1| RNA binding S1 domain-containing protein [Clostridium symbiosum
           WAL-14673]
 gi|323504329|gb|EGB20128.1| RNA binding S1 domain-containing protein [Clostridium symbiosum
           WAL-14673]
          Length = 337

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 5   GSIKWYNPDKGYG-FITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYV 57
           G++   +  K YG FI+ E          +H S ++S  + +    L EGQ VT   +
Sbjct: 241 GTV---DSIKPYGAFISLENGLSG----LVHISQISSKRIPHPSAVLKEGQKVTVKII 291


>gi|148244775|ref|YP_001219469.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA]
 gi|146326602|dbj|BAF61745.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA]
          Length = 105

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 4  RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63
          +G++  +   KGYGFI      + G+  F+H+  + +     L     V ++  QN   G
Sbjct: 6  QGTVAQF-GTKGYGFI----MGDDGEKYFVHQKNIFNK--SRLKVNTRVVFN-TQNSEKG 57


>gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
           KB13]
 gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
           KB13]
          Length = 710

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I        G D  LH S +A   + +    L+EG  V    ++ D  GK
Sbjct: 640 FGAIVQLIP---GKDGLLHISQIAHERVKSVKDHLSEGDEVKVKVIEVDQKGK 689


>gi|323482961|ref|ZP_08088359.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163]
 gi|323403741|gb|EGA96041.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163]
          Length = 337

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 5   GSIKWYNPDKGYG-FITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYV 57
           G++   +  K YG FI+ E          +H S ++S  + +    L EGQ VT   +
Sbjct: 241 GTV---DSIKPYGAFISLENGLSG----LVHISQISSKRIPHPSAVLKEGQKVTVKII 291


>gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
           seropedicae SmR1]
 gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 712

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 12/67 (17%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYSAENLK 71
           +G I        G D  LH S +A+  +      L EGQ V    ++ D  G+     LK
Sbjct: 640 FGAIVQVLP---GKDGLLHISQIANERVNAVADYLKEGQQVRVKVLETDDRGR-----LK 691

Query: 72  LVPKSSN 78
           L  K++ 
Sbjct: 692 LSMKAAQ 698


>gi|301787885|ref|XP_002929362.1| PREDICTED: LOW QUALITY PROTEIN: B box-binding protein-like, partial
           [Ailuropoda melanoleuca]
          Length = 283

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 12/76 (15%)

Query: 2   VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61
           +  G++K +    GY FI          DVF+ ++AV       L     V  D V    
Sbjct: 42  MVLGTVKRFPVRNGYXFIN----RNDTTDVFVAQTAVKKNPRQCLC---SVGLDLV---- 90

Query: 62  NGKYSAENLKLVPKSS 77
            G  +AE L L  ++ 
Sbjct: 91  -GAKAAEQLMLRMQAQ 105


>gi|154482493|ref|ZP_02024941.1| hypothetical protein EUBVEN_00160 [Eubacterium ventriosum ATCC
           27560]
 gi|149736694|gb|EDM52580.1| hypothetical protein EUBVEN_00160 [Eubacterium ventriosum ATCC
           27560]
          Length = 541

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67
           G+GFI  +      DDV++  S +    L     G  VT    +     K+ A
Sbjct: 179 GFGFIRCDNYLPGDDDVYVAPSQIKRFHLKT---GDFVTGQVREKRETEKFGA 228


>gi|153870561|ref|ZP_01999936.1| secreted protein [Beggiatoa sp. PS]
 gi|152072972|gb|EDN70063.1| secreted protein [Beggiatoa sp. PS]
          Length = 796

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77
          FI+   + +S  DVF+H + V   G+  L     +T++  Q        A + +LV   +
Sbjct: 22 FIS---TPQSDKDVFVHVNEVE--GVSMLKSKMQLTFEIKQGPKG--PQAYHARLVQTET 74

Query: 78 N 78
           
Sbjct: 75 Q 75


>gi|148264740|ref|YP_001231446.1| ribonuclease R [Geobacter uraniireducens Rf4]
 gi|146398240|gb|ABQ26873.1| RNAse R [Geobacter uraniireducens Rf4]
          Length = 763

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 14/64 (21%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE---GQLVTYDYVQNDANGKYSAENLK 71
           GYGF+ PE   E   D+F+            L E   G  V    V    +GK     +K
Sbjct: 79  GYGFVIPEAGKE---DIFIPA--------RYLRENMHGDKVEVRIVAKKRDGKQEGRIVK 127

Query: 72  LVPK 75
            V +
Sbjct: 128 TVER 131


>gi|301166788|emb|CBW26365.1| putative polyribonucleotide nucleotidyltransferase [Bacteriovorax
           marinus SJ]
          Length = 709

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 33  LHRSAVASAGLFN----LTEGQLVTYDYVQNDANG--KYSAENLKLVPKSSN 78
           +H S ++   + +    L+EG  V+   V+ D  G  K SA+ +K V K ++
Sbjct: 657 VHVSELSDERVKDVSEYLSEGDKVSVKVVEVDRMGRLKLSAKAVKPVEKKAD 708


>gi|148556711|ref|YP_001264293.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas wittichii
           RW1]
 gi|187611293|sp|A5VCY9|PNP_SPHWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148501901|gb|ABQ70155.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas wittichii
           RW1]
          Length = 774

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 27  SGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
            G D  +H S + +  +      L+EGQ V    ++ D  GK
Sbjct: 642 GGKDGLVHVSEIKNERVEKVADALSEGQEVKVKVLEIDNRGK 683


>gi|225567884|ref|ZP_03776909.1| hypothetical protein CLOHYLEM_03957 [Clostridium hylemonae DSM
           15053]
 gi|225163362|gb|EEG75981.1| hypothetical protein CLOHYLEM_03957 [Clostridium hylemonae DSM
           15053]
          Length = 232

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGFI  +      +DV++  S +    L  
Sbjct: 87  GYGFIRSDNYLPGDNDVYVSPSQIRKFNLKT 117


>gi|124483602|emb|CAM32674.1| Polyribonucleotide nucleotidyltransferase [Herbaspirillum
           seropedicae]
          Length = 712

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 12/67 (17%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYSAENLK 71
           +G I        G D  LH S +A+  +      L EGQ V    ++ D  G+     LK
Sbjct: 640 FGAIVQVLP---GKDGLLHISQIANERVNAVADYLKEGQQVRVKVLETDDRGR-----LK 691

Query: 72  LVPKSSN 78
           L  K++ 
Sbjct: 692 LSMKAAQ 698


>gi|304317934|ref|YP_003853079.1| transcription termination factor Rho [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779436|gb|ADL69995.1| transcription termination factor Rho [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 640

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52
           GYGF+  E   +   D+++ +S +   GL     G  V
Sbjct: 283 GYGFLRVENFIQGNKDIYISQSQIRRFGLKV---GDKV 317


>gi|88812956|ref|ZP_01128199.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
           Nb-231]
 gi|88789734|gb|EAR20858.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
           Nb-231]
          Length = 700

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  +H S +++  + +    L EGQ V    ++ D  G+
Sbjct: 646 GRDGLVHISQISNRRVESVSEELAEGQRVRVKVLEVDRQGR 686


>gi|313905741|ref|ZP_07839101.1| transcription termination factor Rho [Eubacterium cellulosolvens 6]
 gi|313469448|gb|EFR64790.1| transcription termination factor Rho [Eubacterium cellulosolvens 6]
          Length = 505

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGFI  +      DDV++  + +    L  
Sbjct: 146 GYGFIRSDNYLSGSDDVYVSPTQIRRLRLRT 176


>gi|328463974|gb|EGF35475.1| hypothetical protein AAULR_08366 [Lactobacillus rhamnosus MTCC
          5462]
          Length = 46

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 5/13 (38%), Positives = 10/13 (76%)

Query: 2  VHRGSIKWYNPDK 14
          +  G++KW+N +K
Sbjct: 1  MEHGTVKWFNAEK 13


>gi|297180954|gb|ADI17157.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [uncultured gamma proteobacterium
           HF0070_08D07]
          Length = 695

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S +A   + +    L+EGQ V    +  D  G+
Sbjct: 643 GKDGLLHISQIADERVESVTDYLSEGQKVEVVVLDLDQRGR 683


>gi|329767679|ref|ZP_08259198.1| transcription termination factor Rho [Gemella haemolysans M341]
 gi|328839029|gb|EGF88617.1| transcription termination factor Rho [Gemella haemolysans M341]
          Length = 422

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 12  PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71
           P+ G+GF+      +   D+++  S +       L +G  V +  V+    G+  A  L+
Sbjct: 64  PENGFGFLRTVDYKKGETDIYISASQIRRF---ELKKGDEV-FGKVRKPREGERFAGILQ 119

Query: 72  L 72
           +
Sbjct: 120 V 120


>gi|323484420|ref|ZP_08089786.1| hypothetical protein HMPREF9474_01537 [Clostridium symbiosum
           WAL-14163]
 gi|323402198|gb|EGA94530.1| hypothetical protein HMPREF9474_01537 [Clostridium symbiosum
           WAL-14163]
          Length = 733

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
            KG+GF+T EG      DVF     +          G  V     + D   +     +++
Sbjct: 100 SKGFGFVTVEGRE---KDVF-----IPGDRTGGAMHGDKVQIVIEEEDNGKRAEGCVVRV 151

Query: 73  VPKSSN 78
           +  +++
Sbjct: 152 LEHAND 157


>gi|149189790|ref|ZP_01868071.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
 gi|148836439|gb|EDL53395.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
          Length = 713

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  +H S +A   +      L EGQ V    ++ D  G+
Sbjct: 645 GKDGLVHISQIAHERVEKVTDYLKEGQEVQVKVLEIDRQGR 685


>gi|119947020|ref|YP_944700.1| ribonuclease R [Psychromonas ingrahamii 37]
 gi|119865624|gb|ABM05101.1| RNAse R [Psychromonas ingrahamii 37]
          Length = 834

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 12/66 (18%)

Query: 15  GYGFITPEGSTESGDDVF--LHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72
           G+GF+  E   E G D+F   H+       +  L  G  V    V+ D+ G+  A  ++L
Sbjct: 95  GFGFLKTE---EEGADLFLPAHQ-------MRLLFHGDKVLVQPVKVDSRGRTEARFVRL 144

Query: 73  VPKSSN 78
           + +   
Sbjct: 145 LEERKE 150


>gi|8100800|gb|AAF72415.1|AF218051_5 cold shock protein [Salmonella enterica subsp. enterica serovar
          Enteritidis]
          Length = 67

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)

Query: 2  VHRGSIKWYNPDKGYGFITPEGSTESGDDVF 32
          +  G + +Y+  KGYGFI  E     G DVF
Sbjct: 1  MENGFVNFYDHVKGYGFIRRER----GRDVF 27


>gi|291547179|emb|CBL20287.1| transcription termination factor Rho [Ruminococcus sp. SR1/5]
          Length = 506

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           GYGFI  E      +D+++  S +    L     G     D +Q +   K   E
Sbjct: 147 GYGFIRCENYMPGENDIYVSPSQIRRFNLKT---G-----DIIQGNIRIKTQGE 192


>gi|332160846|ref|YP_004297423.1| hypothetical protein YE105_C1224 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|325665076|gb|ADZ41720.1| hypothetical protein YE105_C1224 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
          Length = 159

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N      SA  
Sbjct: 8  FFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTKG--LSAFA 59

Query: 70 LKLVPKS 76
          +K+  +S
Sbjct: 60 VKVAIES 66


>gi|87119787|ref|ZP_01075684.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121]
 gi|86165263|gb|EAQ66531.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121]
          Length = 702

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  +H S +A   +      L EGQ V    +  DA G+
Sbjct: 644 GKDGLVHISQIAEERIRAVSDFLEEGQEVLVKVLDVDARGR 684


>gi|225029001|ref|ZP_03718193.1| hypothetical protein EUBHAL_03293 [Eubacterium hallii DSM 3353]
 gi|224953699|gb|EEG34908.1| hypothetical protein EUBHAL_03293 [Eubacterium hallii DSM 3353]
          Length = 523

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGFI  E      +DV++  S +    L  
Sbjct: 163 GYGFIRCENYLPGENDVYVSPSQIRRFNLKT 193


>gi|163845761|ref|YP_001633805.1| hypothetical protein Caur_0162 [Chloroflexus aurantiacus J-10-fl]
 gi|222523469|ref|YP_002567939.1| putative cold-shock DNA-binding domain-containing protein
          [Chloroflexus sp. Y-400-fl]
 gi|163667050|gb|ABY33416.1| hypothetical protein Caur_0162 [Chloroflexus aurantiacus J-10-fl]
 gi|222447348|gb|ACM51614.1| putative cold-shock DNA-binding domain protein [Chloroflexus sp.
          Y-400-fl]
          Length = 192

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 6/37 (16%)

Query: 2  VHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSA 37
          + +G++  WY+ +KGYGFI       +    F+H +A
Sbjct: 5  LKQGTLSVWYD-EKGYGFIVDPQEERT----FVHITA 36


>gi|283798444|ref|ZP_06347597.1| transcription termination factor Rho [Clostridium sp. M62/1]
 gi|291073849|gb|EFE11213.1| transcription termination factor Rho [Clostridium sp. M62/1]
 gi|295090772|emb|CBK76879.1| transcription termination factor Rho [Clostridium cf.
           saccharolyticum K10]
          Length = 628

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 8/54 (14%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68
           G+GFI  E      +DV++  S +    L     G     D V      K + E
Sbjct: 268 GFGFIRCENFLPGENDVYVAPSQIRRFNLKT---G-----DIVLGSRRIKTATE 313


>gi|114778695|ref|ZP_01453507.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551057|gb|EAU53619.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
           ferrooxydans PV-1]
          Length = 705

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 27  SGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQNDANGK 64
            G D  +H S +A+  +      L EGQ V    ++ D  GK
Sbjct: 654 GGTDGLVHISQIANHRVEKVADELKEGQEVRVKVLEVDRQGK 695


>gi|285005772|ref|YP_001007202.2| hypothetical protein YE3013 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|318604748|emb|CBY26246.1| putative cold-shock protein [Yersinia enterocolitica subsp.
          palearctica Y11]
 gi|330863375|emb|CBX73497.1| unknown protein [Yersinia enterocolitica W22703]
          Length = 159

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N      SA  
Sbjct: 8  FFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTKG--LSAFA 59

Query: 70 LKLVPKS 76
          +K+  +S
Sbjct: 60 VKVAIES 66


>gi|238749762|ref|ZP_04611267.1| Cold shock-like protein [Yersinia rohdei ATCC 43380]
 gi|238712417|gb|EEQ04630.1| Cold shock-like protein [Yersinia rohdei ATCC 43380]
          Length = 41

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70
          +++++A+A+    +L+EGQ V +   ++   G  +A+ +
Sbjct: 2  YVNKTAIANTKNKSLSEGQDVEFSTYRSIY-GPSAADVI 39


>gi|225575050|ref|ZP_03783660.1| hypothetical protein RUMHYD_03139 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037720|gb|EEG47966.1| hypothetical protein RUMHYD_03139 [Blautia hydrogenotrophica DSM
           10507]
          Length = 484

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           GYGFI  E      +D+++ +S +    L  
Sbjct: 126 GYGFIRCENYLPGENDIYVSQSQIRKFNLKT 156


>gi|238785728|ref|ZP_04629702.1| Cold-shock DNA-binding domain protein [Yersinia bercovieri ATCC
          43970]
 gi|238713368|gb|EEQ05406.1| Cold-shock DNA-binding domain protein [Yersinia bercovieri ATCC
          43970]
          Length = 159

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N      SA  
Sbjct: 8  FFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTKG--LSAFA 59

Query: 70 LKLVPKS 76
          +K+  +S
Sbjct: 60 VKVAIES 66


>gi|302873634|ref|YP_003842267.1| ribonuclease R [Clostridium cellulovorans 743B]
 gi|307688185|ref|ZP_07630631.1| ribonuclease R [Clostridium cellulovorans 743B]
 gi|302576491|gb|ADL50503.1| ribonuclease R [Clostridium cellulovorans 743B]
          Length = 785

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY-SAENLK 71
            KG+GF+ P+   E   DVF+  S +  A       G  V       + NGK    E ++
Sbjct: 76  SKGFGFVIPD--EEGVKDVFIPSSQMGGA-----IHGDRVVAKITFGEKNGKKCEGEIIR 128

Query: 72  LVPKSSN 78
           ++ +++ 
Sbjct: 129 ILERNTK 135


>gi|162418309|ref|YP_001606346.1| cold-shock DNA-binding domain-containing protein [Yersinia pestis
          Angola]
 gi|162351124|gb|ABX85072.1| cold-shock DNA-binding domain protein [Yersinia pestis Angola]
          Length = 159

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N      SA  
Sbjct: 8  FFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTKG--LSAFA 59

Query: 70 LKLVPKS 76
          +K+  +S
Sbjct: 60 VKVAIES 66


>gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase/polyadenylase [Herminiimonas
           arsenicoxydans]
 gi|187610275|sp|A4G647|PNP_HERAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|133738937|emb|CAL61984.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Herminiimonas arsenicoxydans]
          Length = 710

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYS 66
           +G I        G D  LH S +A+  +      L EGQ V    ++ D  G+  
Sbjct: 641 FGAIVQVMP---GKDGLLHISQIANERVNAVADYLKEGQQVRVKVLETDDRGRLK 692


>gi|237745432|ref|ZP_04575912.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           HOxBLS]
 gi|229376783|gb|EEO26874.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           HOxBLS]
          Length = 707

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I        G D  LH S +AS  +      L EGQ V    ++ D  G+
Sbjct: 640 FGAIVQILP---GKDGLLHISQIASERVNAVSDYLEEGQSVRVKVLETDERGR 689


>gi|289616424|emb|CBI56951.1| unnamed protein product [Sordaria macrospora]
          Length = 348

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 9  WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53
          W    K  GF++P+       D+  HRSA  + G   +  G  ++
Sbjct: 52 WTADQKDNGFVSPDAF--GTPDIICHRSATPAGGHATVKAGDKIS 94


>gi|225374513|ref|ZP_03751734.1| hypothetical protein ROSEINA2194_00128 [Roseburia inulinivorans DSM
           16841]
 gi|225213751|gb|EEG96105.1| hypothetical protein ROSEINA2194_00128 [Roseburia inulinivorans DSM
           16841]
          Length = 473

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 15  GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45
           G+GFI  +      +DV++  S +    L  
Sbjct: 114 GFGFIRSDNYLPGENDVYVSPSQIRKFNLKT 144


>gi|145477639|ref|XP_001424842.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391909|emb|CAK57444.1| unnamed protein product [Paramecium tetraurelia]
          Length = 383

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHR 35
           G +K+YN  K YGF   +   ++  D+F+H+
Sbjct: 303 GYLKFYNESKQYGFFLDD---KNKKDIFVHQ 330


>gi|313242234|emb|CBY34398.1| unnamed protein product [Oikopleura dioica]
          Length = 157

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 5   GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63
           G++  ++  KG+GF+  +   E G   F H S V S  +    EG +V Y  +       
Sbjct: 59  GTVSAFSRTKGHGFLNSD---EDGKQEFFHVSDVVSQIVP--KEGDVVKYRVIPIPPKYE 113

Query: 64  KYSAENLKLVPKS 76
           KY A  + ++ + 
Sbjct: 114 KYQAVQVTIMNEE 126


>gi|168217054|ref|ZP_02642679.1| ribonuclease R [Clostridium perfringens NCTC 8239]
 gi|182380798|gb|EDT78277.1| ribonuclease R [Clostridium perfringens NCTC 8239]
          Length = 751

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            KG+GF+ P+   E   DVF+ ++A+  A       G  V    V+    GK 
Sbjct: 76  QKGFGFLIPD--EEGVTDVFIPKNALNGA-----MNGDRVLGKVVKESQEGKR 121


>gi|18310278|ref|NP_562212.1| ribonuclease R [Clostridium perfringens str. 13]
 gi|18144958|dbj|BAB81002.1| ribonuclease R [Clostridium perfringens str. 13]
          Length = 751

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            KG+GF+ P+   E   DVF+ ++A+  A       G  V    V+    GK 
Sbjct: 76  QKGFGFLIPD--EEGVTDVFIPKNALNGA-----MNGDRVLGKVVKESQEGKR 121


>gi|237747627|ref|ZP_04578107.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           OXCC13]
 gi|229378989|gb|EEO29080.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           OXCC13]
          Length = 713

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I        G D  LH S +AS  +      L EGQ V    ++ D  G+
Sbjct: 640 FGAIVQILP---GKDGLLHISQIASERVNAVTDYLEEGQAVRVKVLETDDRGR 689


>gi|238028147|ref|YP_002912378.1| polynucleotide phosphorylase/polyadenylase [Burkholderia glumae
           BGR1]
 gi|237877341|gb|ACR29674.1| Polyribonucleotide nucleotidyltransferase [Burkholderia glumae
           BGR1]
          Length = 709

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 28  GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           G D  LH S + +  + +    L EGQ+V    +Q D  G+
Sbjct: 651 GKDGLLHISEIVNERVKDINDYLKEGQVVKIKVIQVDEKGR 691


>gi|170025253|ref|YP_001721758.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186894464|ref|YP_001871576.1| cold-shock DNA-binding domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|169751787|gb|ACA69305.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis YPIII]
 gi|186697490|gb|ACC88119.1| cold-shock DNA-binding domain protein [Yersinia
          pseudotuberculosis PB1/+]
          Length = 159

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69
          +  DKG+GFIT     E+GD+ + H   +  A    + +G  VT++   N      SA  
Sbjct: 8  FFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTKG--LSAFA 59

Query: 70 LKLVPKS 76
          +K+  +S
Sbjct: 60 VKVAIES 66


>gi|110800238|ref|YP_695945.1| ribonuclease R [Clostridium perfringens ATCC 13124]
 gi|110674885|gb|ABG83872.1| ribonuclease R [Clostridium perfringens ATCC 13124]
          Length = 751

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65
            KG+GF+ P+   E   DVF+ ++A+  A       G  V    V+    GK 
Sbjct: 76  QKGFGFLIPD--EEGVTDVFIPKNALNGA-----MNGDRVLGKVVKESQEGKR 121


>gi|329901002|ref|ZP_08272663.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549290|gb|EGF33865.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 717

 Score = 33.8 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYS 66
           +G I        G D  LH S +A+  +      L EGQ V    ++ D  G+  
Sbjct: 640 FGAIVQVMP---GKDGLLHISQIANERVNAVADYLKEGQQVRVKVLETDDRGRLK 691


>gi|260888570|ref|ZP_05899833.1| ribonuclease R [Selenomonas sputigena ATCC 35185]
 gi|330838137|ref|YP_004412717.1| ribonuclease R [Selenomonas sputigena ATCC 35185]
 gi|260861767|gb|EEX76267.1| ribonuclease R [Selenomonas sputigena ATCC 35185]
 gi|329745901|gb|AEB99257.1| ribonuclease R [Selenomonas sputigena ATCC 35185]
          Length = 867

 Score = 33.8 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 12  PDKGYGFITPEGSTESGD-DVFL 33
             KG+GFI PE   +  D D+F+
Sbjct: 78  SAKGFGFIIPEVREKETDSDIFV 100


>gi|15895663|ref|NP_349012.1| hypothetical protein CA_C2397 [Clostridium acetobutylicum ATCC
          824]
 gi|15025410|gb|AAK80352.1|AE007739_8 Hypothetical protein CA_C2397 [Clostridium acetobutylicum ATCC
          824]
 gi|325509813|gb|ADZ21449.1| Conserved hypothetical protein [Clostridium acetobutylicum EA
          2018]
          Length = 238

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 18/88 (20%)

Query: 1  MVHRGSIKWY----------NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50
          M   G I+W+          N    +GFI        G D++ ++  V    L  LT G 
Sbjct: 1  MREIGLIRWFGGYNLRTKKMND---FGFI----RDNKGQDIYFNKGHVQCK-LKELTPGI 52

Query: 51 LVTYDYVQNDANGKYSAENLKLVPKSSN 78
           +T++   N  N +  A  +KL+   ++
Sbjct: 53 GITFERGVNFKNDREQAIRIKLLKDEND 80


>gi|307110277|gb|EFN58513.1| hypothetical protein CHLNCDRAFT_140575 [Chlorella variabilis]
          Length = 770

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 21  PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55
           P G  E G  + +  S   S+    L  GQ V +D
Sbjct: 422 PAGGVEEGARIRVTFSLFQSSMFRRLRPGQKVDFD 456


>gi|149927537|ref|ZP_01915791.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
 gi|149823810|gb|EDM83036.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
          Length = 714

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 16  YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64
           +G I    S   G D  LH S +A+  +      L EGQ+V    ++ D  G+
Sbjct: 640 FGAIV---SVLPGKDGLLHISQIANERVNTVGDFLKEGQVVKVKVLEADEKGR 689


>gi|118442907|ref|YP_877499.1| ribonuclease R [Clostridium novyi NT]
 gi|118133363|gb|ABK60407.1| ribonuclease R [Clostridium novyi NT]
          Length = 745

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 13  DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS-AENLK 71
            +GYGF+ P+   +   DVF+  S +  A       G  V    ++ + NGK    E ++
Sbjct: 76  QRGYGFVIPD---DDSPDVFVISSYMNGA-----MHGDRVVAQVLKEENNGKRREGEIIR 127

Query: 72  LVPKSSN 78
           +  +++ 
Sbjct: 128 VTERANE 134


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.315    0.189    0.751 

Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,102,015,577
Number of Sequences: 14124377
Number of extensions: 101688739
Number of successful extensions: 170541
Number of sequences better than 10.0: 5588
Number of HSP's better than 10.0 without gapping: 7195
Number of HSP's successfully gapped in prelim test: 3010
Number of HSP's that attempted gapping in prelim test: 152315
Number of HSP's gapped (non-prelim): 11281
length of query: 78
length of database: 4,842,793,630
effective HSP length: 49
effective length of query: 29
effective length of database: 4,150,699,157
effective search space: 120370275553
effective search space used: 120370275553
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 77 (33.8 bits)