BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780913|ref|YP_003065326.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62] (78 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780913|ref|YP_003065326.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040590|gb|ACT57386.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62] Length = 78 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 78/78 (100%), Positives = 78/78 (100%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND Sbjct: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 Query: 61 ANGKYSAENLKLVPKSSN 78 ANGKYSAENLKLVPKSSN Sbjct: 61 ANGKYSAENLKLVPKSSN 78 >gi|315122408|ref|YP_004062897.1| cold shock protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495810|gb|ADR52409.1| cold shock protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 74 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/70 (64%), Positives = 55/70 (78%), Gaps = 2/70 (2%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RGSIKWY+ +KGYGFIT + E DVFLHRSAV SAGL ++ EGQ V YD+V+N+ G Sbjct: 7 RGSIKWYDANKGYGFITSASAGEK--DVFLHRSAVMSAGLPDVREGQEVIYDFVENETTG 64 Query: 64 KYSAENLKLV 73 K+SAEN+KLV Sbjct: 65 KFSAENIKLV 74 >gi|27379238|ref|NP_770767.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27352389|dbj|BAC49392.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 68 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/72 (56%), Positives = 50/72 (69%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+NP KGYGFI P GS + DVF+H SAV AGL L E Q+V YD V+N Sbjct: 1 MPQKGTVKWFNPTKGYGFIKPNGSDK---DVFVHISAVERAGLSTLNENQVVEYDLVEN- 56 Query: 61 ANGKYSAENLKL 72 GK SAENLK+ Sbjct: 57 -RGKSSAENLKV 67 >gi|158424300|ref|YP_001525592.1| cold shock DNA-binding domain-containing protein [Azorhizobium caulinodans ORS 571] gi|158331189|dbj|BAF88674.1| cold-shock DNA-binding domain [Azorhizobium caulinodans ORS 571] Length = 117 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP+KG+GFI P+ + G D F+H SAV AGL L EGQ V YD V + +GK Sbjct: 51 GTVKWFNPEKGFGFIAPD---DGGADAFVHISAVERAGLPPLREGQKVNYDLVADKRSGK 107 Query: 65 YSAENLKLVP 74 SA NL LVP Sbjct: 108 SSASNLTLVP 117 >gi|27382370|ref|NP_773899.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27355541|dbj|BAC52524.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 67 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ +G++KW+NP KGYGFI P G DVF+H SAV AGL L EGQ V Y+ + N Sbjct: 1 MMAKGTVKWFNPTKGYGFIQP---ASGGKDVFVHISAVQKAGLSTLNEGQTVEYEEIAN- 56 Query: 61 ANGKYSAENLKL 72 GK SAENLK+ Sbjct: 57 -RGKTSAENLKV 67 >gi|92118857|ref|YP_578586.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91801751|gb|ABE64126.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 66 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+NP KGYGFI P G G DVF+H SAV AGL L EGQ V ++ V N G Sbjct: 3 KGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLSTLNEGQTVEFEEVAN--RG 57 Query: 64 KYSAENLKL 72 K SAENLK+ Sbjct: 58 KTSAENLKV 66 >gi|86749607|ref|YP_486103.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris HaA2] gi|86572635|gb|ABD07192.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris HaA2] Length = 67 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/72 (56%), Positives = 49/72 (68%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+NP KGYGFI P SGD DVF+H SAV AGL L E Q + YD V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIRPT----SGDKDVFVHISAVERAGLSTLNENQAIEYDLVEN- 55 Query: 61 ANGKYSAENLKL 72 GK SAENLKL Sbjct: 56 -RGKTSAENLKL 66 >gi|299132091|ref|ZP_07025286.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] gi|298592228|gb|EFI52428.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] Length = 66 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+NP KGYGFI P G G DVF+H SAV AGL +L EGQ + ++ V N G Sbjct: 3 KGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLTSLNEGQTIEFEEVAN--RG 57 Query: 64 KYSAENLKL 72 K SAENLK+ Sbjct: 58 KTSAENLKV 66 >gi|75677234|ref|YP_319655.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255] gi|74422104|gb|ABA06303.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi Nb-255] Length = 66 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+NP KGYGFI P G G DVF+H SAV AGL L EGQ V ++ V N G Sbjct: 3 KGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVERAGLSTLNEGQTVEFEEVAN--RG 57 Query: 64 KYSAENLKL 72 K SAENLK+ Sbjct: 58 KTSAENLKV 66 >gi|209884203|ref|YP_002288060.1| hypothetical protein OCAR_5060 [Oligotropha carboxidovorans OM5] gi|209872399|gb|ACI92195.1| conserved domain protein [Oligotropha carboxidovorans OM5] Length = 66 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+NP KGYGFI P G G DVF+H SAV AGL +L EGQ + ++ V N G Sbjct: 3 KGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLSSLNEGQTIEFEEVAN--RG 57 Query: 64 KYSAENLKL 72 K SAENLK+ Sbjct: 58 KTSAENLKV 66 >gi|148255251|ref|YP_001239836.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp. BTAi1] gi|146407424|gb|ABQ35930.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1] Length = 69 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 7/71 (9%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++GS+KW+NP KGYGFI P G GD DVF+H SAV AGL L E Q + YD V+ + Sbjct: 4 YKGSVKWFNPTKGYGFIKPAG----GDKDVFVHISAVERAGLTTLNENQAIEYDLVE--S 57 Query: 62 NGKYSAENLKL 72 GK SAENLKL Sbjct: 58 RGKTSAENLKL 68 >gi|146340323|ref|YP_001205371.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278] gi|146193129|emb|CAL77140.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278] Length = 69 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 7/71 (9%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++GS+KW+NP KGYGFI P G GD DVF+H SAV AGL L E Q + YD V+ + Sbjct: 4 YKGSVKWFNPTKGYGFIKPTG----GDKDVFVHISAVERAGLTTLNENQAIEYDLVE--S 57 Query: 62 NGKYSAENLKL 72 GK SAENLKL Sbjct: 58 RGKTSAENLKL 68 >gi|299131851|ref|ZP_07025046.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] gi|298591988|gb|EFI52188.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] Length = 69 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI P T+ G DVF+H SAV AGL NL EGQ V ++ + G Sbjct: 3 QGTVKWFNSQKGFGFIAP---TDGGTDVFVHISAVERAGLSNLAEGQKVEFEAKTDKMRG 59 Query: 64 KYSAENLKLV 73 K SAENL+L+ Sbjct: 60 KTSAENLQLL 69 >gi|227819992|ref|YP_002823963.1| cold shock protein CspA [Sinorhizobium fredii NGR234] gi|36958641|gb|AAQ87109.1| Cold shock protein cspA [Sinorhizobium fredii NGR234] gi|227338991|gb|ACP23210.1| cold shock protein CspA [Sinorhizobium fredii NGR234] Length = 69 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI P+ GST DVF+H SAV AGL +L EGQ VTYD V+++ +G Sbjct: 4 GTVKWFNSTKGFGFIQPDDGST----DVFVHISAVERAGLRSLVEGQKVTYDIVRDNRSG 59 Query: 64 KYSAENLK 71 K SA+NL+ Sbjct: 60 KSSADNLR 67 >gi|85713889|ref|ZP_01044878.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] gi|85699015|gb|EAQ36883.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] Length = 66 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 39/69 (56%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+NP KGYGFI P G G DVF+H SAV AGL L EGQ V ++ V N G Sbjct: 3 KGIVKWFNPTKGYGFIQPAG---GGKDVFVHISAVERAGLSTLNEGQTVEFEEVAN--RG 57 Query: 64 KYSAENLKL 72 K SAENLK+ Sbjct: 58 KTSAENLKV 66 >gi|75675791|ref|YP_318212.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255] gi|74420661|gb|ABA04860.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi Nb-255] Length = 67 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + YD V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIKP---TTGDRDVFVHISAVERAGLSTLDENQTIEYDLVEN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKI 66 >gi|197104417|ref|YP_002129794.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] gi|196477837|gb|ACG77365.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] Length = 250 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP KG+GFI PEG G D+F+H SAV AGL L EGQ V +D Q+ +GK Sbjct: 184 GVVKWFNPTKGFGFIKPEGG---GQDIFVHISAVEQAGLSGLNEGQTVDFDLEQDRRSGK 240 Query: 65 YSAENLKL 72 SA NLK+ Sbjct: 241 TSATNLKI 248 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAVA AGL L EG V Y+ Q+ +GK Sbjct: 59 GTVKWFNTAKGFGFIQPD---DGGQDVFVHISAVAQAGLDALNEGDQVEYELEQDRRSGK 115 Query: 65 YSAENL 70 +A ++ Sbjct: 116 LAATSI 121 >gi|332715879|ref|YP_004443345.1| cold shock-like protein cspA [Agrobacterium sp. H13-3] gi|325062564|gb|ADY66254.1| cold shock-like protein cspA [Agrobacterium sp. H13-3] Length = 69 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ G DVF+H SAV AGL +L +GQ +TYD VQ+ Sbjct: 1 MNTGTVKWFNATKGFGFIQPD---NGGTDVFVHISAVERAGLRSLNDGQKITYDIVQDRK 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKSSADNLR 67 >gi|316933716|ref|YP_004108698.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601430|gb|ADU43965.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 67 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + YD V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQAIEYDLVEN-- 55 Query: 62 NGKYSAENLKL 72 G+ SAENLK+ Sbjct: 56 RGRTSAENLKI 66 >gi|217977958|ref|YP_002362105.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] gi|217503334|gb|ACK50743.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] Length = 69 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NPDKGYGFI P+ + G DVF+H SAV +GL +L EGQ + Y+ + + GK Sbjct: 4 GTVKWFNPDKGYGFIQPD---DGGKDVFVHISAVEQSGLRHLQEGQKINYEVIADKRTGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 SSAGNLR 67 >gi|15965810|ref|NP_386163.1| cold shock transcription regulator protein [Sinorhizobium meliloti 1021] gi|307311344|ref|ZP_07590987.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307318877|ref|ZP_07598309.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|7387593|sp|Q9Z3S6|CSPA_RHIME RecName: Full=Cold shock protein CspA gi|3776223|gb|AAC64672.1| CspA [Sinorhizobium meliloti] gi|15075079|emb|CAC46636.1| Cold shock transcriptional regulator [Sinorhizobium meliloti 1021] gi|306895598|gb|EFN26352.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306899645|gb|EFN30273.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 69 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ + DVF+H SAV AG+ +L EGQ VTYD V++ Sbjct: 1 MNSGTVKWFNSTKGFGFIQPD---DGATDVFVHASAVERAGMRSLVEGQKVTYDIVRDTK 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKSSADNLR 67 >gi|209966586|ref|YP_002299501.1| hypothetical protein RC1_3328 [Rhodospirillum centenum SW] gi|209960052|gb|ACJ00689.1| conserved domain protein [Rhodospirillum centenum SW] Length = 69 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE G DVF+H SAV AGL L+EGQ V+Y+ ++ GK Sbjct: 4 GTVKWFNSTKGYGFIQPE---NGGADVFVHISAVERAGLSTLSEGQRVSYEEQRDPRRGK 60 Query: 65 YSAENLK 71 SAENLK Sbjct: 61 TSAENLK 67 >gi|92117648|ref|YP_577377.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91800542|gb|ABE62917.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 67 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P DVF+H SAV AGL L E Q++ YD V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIKPMNDDR---DVFVHISAVERAGLSTLNENQVIEYDLVEN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKV 66 >gi|90423823|ref|YP_532193.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90105837|gb|ABD87874.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB18] Length = 67 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + Y+ V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQTIEYELVEN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKI 66 >gi|39936116|ref|NP_948392.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris CGA009] gi|192291834|ref|YP_001992439.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] gi|39649970|emb|CAE28494.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009] gi|192285583|gb|ACF01964.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] Length = 67 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + YD V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQPIEYDLVEN-- 55 Query: 62 NGKYSAENLKL 72 G+ SAENLK+ Sbjct: 56 RGRTSAENLKI 66 >gi|146337756|ref|YP_001202804.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278] gi|146190562|emb|CAL74564.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278] Length = 68 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI P+ + G+DVF+H SAV AGL L EGQ + YD + G Sbjct: 2 QGTVKWFNGQKGFGFIQPQ---DGGNDVFVHISAVERAGLAGLAEGQKLNYDVKTDKMRG 58 Query: 64 KYSAENLKLV 73 K SAENL L+ Sbjct: 59 KTSAENLSLI 68 >gi|146338511|ref|YP_001203559.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278] gi|146191317|emb|CAL75322.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278] Length = 66 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+NP KGYGFI P G D+F+H SAV AGL L EGQ + Y+ + N G Sbjct: 3 KGTVKWFNPTKGYGFIQP---AAGGKDIFVHISAVQKAGLATLNEGQTIEYEEIAN--RG 57 Query: 64 KYSAENLKL 72 + SAENLK+ Sbjct: 58 RSSAENLKV 66 >gi|115525288|ref|YP_782199.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115519235|gb|ABJ07219.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisA53] Length = 67 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+NP KGYGFI P SGD DVF+H SAV AGL L E Q + Y+ V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIRP----TSGDKDVFVHISAVERAGLSTLNENQPIEYELVEN- 55 Query: 61 ANGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 -RGKTSAENLKI 66 >gi|297182471|gb|ADI18634.1| cold shock proteins [uncultured Rhodospirillales bacterium HF4000_24M03] Length = 89 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP KG+GFI PE + +D F+H SAV SAGL L EGQ V+Y+ +Q NGK Sbjct: 24 GTVKWFNPAKGFGFIEPE---DGSNDAFVHISAVESAGLTTLNEGQKVSYE-LQPGKNGK 79 Query: 65 YSAENLKL 72 SAENL + Sbjct: 80 SSAENLSV 87 >gi|150397151|ref|YP_001327618.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150028666|gb|ABR60783.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] Length = 69 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ + DVF+H SAV AG+ +L EGQ VT+D V++ Sbjct: 1 MNSGTVKWFNSTKGFGFIQPD---DGATDVFVHASAVERAGMRSLVEGQKVTFDIVRDTK 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKSSADNLR 67 >gi|148257897|ref|YP_001242482.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp. BTAi1] gi|146410070|gb|ABQ38576.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1] Length = 66 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+NP KGYGFI P G D+F+H SAV AGL L EGQ + Y+ + N G Sbjct: 3 KGTVKWFNPTKGYGFIQP---AAGGKDIFVHISAVQKAGLTTLNEGQTIEYEEIAN--RG 57 Query: 64 KYSAENLKL 72 + SAENLK+ Sbjct: 58 RSSAENLKV 66 >gi|27383360|ref|NP_774889.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27356535|dbj|BAC53514.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 67 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP KGYGFI P+ G+DVF+H SAV AG +L EG V++D V+N GK Sbjct: 4 GTVKWFNPTKGYGFIQPD---SGGNDVFVHISAVEKAGFTSLAEGAKVSFDIVKN--RGK 58 Query: 65 YSAENLKL 72 SAENL++ Sbjct: 59 ESAENLRI 66 >gi|85714849|ref|ZP_01045835.1| cold shock protein [Nitrobacter sp. Nb-311A] gi|85698335|gb|EAQ36206.1| cold shock protein [Nitrobacter sp. Nb-311A] Length = 81 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KGYGFI P+G G+DVF+H SAV AGL L EGQ V+++ ++A GK Sbjct: 16 GIVKWFNSQKGYGFIQPDGG---GNDVFVHISAVQRAGLNGLGEGQKVSFEARTDEARGK 72 Query: 65 YSAENLKL 72 SA+NL L Sbjct: 73 VSAQNLSL 80 >gi|115524372|ref|YP_781283.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115518319|gb|ABJ06303.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisA53] Length = 69 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P ++ G DVF+H SAV AGL L EGQ V+Y V + GK Sbjct: 4 GTVKWFNGQKGFGFIEP---SDGGKDVFVHISAVERAGLTGLAEGQKVSYQVVADKKRGK 60 Query: 65 YSAENLKLV 73 SAE+L LV Sbjct: 61 ESAESLALV 69 >gi|182680002|ref|YP_001834148.1| cold-shock DNA-binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635885|gb|ACB96659.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 69 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI P+ E G DVF+H SAV +GL +L EGQ + YD V + GK Sbjct: 4 GTVKWFNAEKGYGFIQPD---EGGKDVFVHISAVEQSGLRHLAEGQKINYDVVPDKRTGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 SSAGNLR 67 >gi|315498658|ref|YP_004087462.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] gi|315416670|gb|ADU13311.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] Length = 69 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G+DVF+H SAV +GL L EGQ VT++ ++ +GK Sbjct: 4 GTVKWFNGTKGYGFIQPD---DGGNDVFVHISAVERSGLRGLNEGQKVTFELARDKRSGK 60 Query: 65 YSAENLKL 72 SAENL++ Sbjct: 61 MSAENLQV 68 >gi|39936734|ref|NP_949010.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris CGA009] gi|316933046|ref|YP_004108028.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|39650590|emb|CAE29113.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009] gi|315600760|gb|ADU43295.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 84 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+N KGYGFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + Sbjct: 15 VSMGTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 71 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 72 SGKSSADNLR 81 >gi|254702210|ref|ZP_05164038.1| cold shock protein CSPA [Brucella suis bv. 5 str. 513] gi|261752785|ref|ZP_05996494.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261742538|gb|EEY30464.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 5 str. 513] Length = 69 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ Sbjct: 4 GTVKWFNATKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 60 Query: 65 YSAENL 70 SA+NL Sbjct: 61 SSADNL 66 >gi|23502361|ref|NP_698488.1| cold-shock family protein [Brucella suis 1330] gi|161619440|ref|YP_001593327.1| hypothetical protein BCAN_A1530 [Brucella canis ATCC 23365] gi|163843747|ref|YP_001628151.1| hypothetical protein BSUIS_A1549 [Brucella suis ATCC 23445] gi|225627936|ref|ZP_03785972.1| cold-shock family protein [Brucella ceti str. Cudo] gi|225852973|ref|YP_002733206.1| hypothetical protein BMEA_A1545 [Brucella melitensis ATCC 23457] gi|254704745|ref|ZP_05166573.1| cold shock protein CSPA [Brucella suis bv. 3 str. 686] gi|254708158|ref|ZP_05169986.1| cold shock protein CSPA [Brucella pinnipedialis M163/99/10] gi|254710530|ref|ZP_05172341.1| cold shock protein CSPA [Brucella pinnipedialis B2/94] gi|254714712|ref|ZP_05176523.1| cold shock protein CSPA [Brucella ceti M644/93/1] gi|254717773|ref|ZP_05179584.1| cold shock protein CSPA [Brucella ceti M13/05/1] gi|254719531|ref|ZP_05181342.1| cold shock protein CSPA [Brucella sp. 83/13] gi|256032023|ref|ZP_05445637.1| cold shock protein CSPA [Brucella pinnipedialis M292/94/1] gi|256045115|ref|ZP_05448016.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. Rev.1] gi|256061545|ref|ZP_05451687.1| cold shock protein CSPA [Brucella neotomae 5K33] gi|256160221|ref|ZP_05457915.1| cold shock protein CSPA [Brucella ceti M490/95/1] gi|256255427|ref|ZP_05460963.1| cold shock protein CSPA [Brucella ceti B1/94] gi|256369909|ref|YP_003107420.1| cold-shock family protein [Brucella microti CCM 4915] gi|260169160|ref|ZP_05755971.1| cold shock protein CSPA [Brucella sp. F5/99] gi|260565284|ref|ZP_05835768.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260566008|ref|ZP_05836478.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|261219622|ref|ZP_05933903.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M13/05/1] gi|261315666|ref|ZP_05954863.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261322510|ref|ZP_05961707.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M644/93/1] gi|261325555|ref|ZP_05964752.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae 5K33] gi|261755443|ref|ZP_05999152.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|265989135|ref|ZP_06101692.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265991548|ref|ZP_06104105.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265998596|ref|ZP_06111153.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M490/95/1] gi|306838469|ref|ZP_07471310.1| cold-shock family protein [Brucella sp. NF 2653] gi|306843158|ref|ZP_07475777.1| cold-shock family protein [Brucella sp. BO2] gi|306844496|ref|ZP_07477085.1| cold-shock family protein [Brucella sp. BO1] gi|23348343|gb|AAN30403.1| cold-shock family protein [Brucella suis 1330] gi|161336251|gb|ABX62556.1| Hypothetical protein BCAN_A1530 [Brucella canis ATCC 23365] gi|163674470|gb|ABY38581.1| Hypothetical protein BSUIS_A1549 [Brucella suis ATCC 23445] gi|225617099|gb|EEH14145.1| cold-shock family protein [Brucella ceti str. Cudo] gi|225641338|gb|ACO01252.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|256000072|gb|ACU48471.1| cold-shock family protein [Brucella microti CCM 4915] gi|260151352|gb|EEW86446.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260155526|gb|EEW90606.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|260924711|gb|EEX91279.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M13/05/1] gi|261295200|gb|EEX98696.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M644/93/1] gi|261301535|gb|EEY05032.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae 5K33] gi|261304692|gb|EEY08189.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261745196|gb|EEY33122.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|262553220|gb|EEZ09054.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M490/95/1] gi|263002332|gb|EEZ14907.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|264661332|gb|EEZ31593.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|306275107|gb|EFM56863.1| cold-shock family protein [Brucella sp. BO1] gi|306286653|gb|EFM58214.1| cold-shock family protein [Brucella sp. BO2] gi|306406433|gb|EFM62671.1| cold-shock family protein [Brucella sp. NF 2653] Length = 69 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ Sbjct: 4 GTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 60 Query: 65 YSAENL 70 SA+NL Sbjct: 61 SSADNL 66 >gi|91977426|ref|YP_570085.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris BisB5] gi|91683882|gb|ABE40184.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB5] Length = 67 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+NP KGYGFI P SGD DVF+H SAV AGL L E Q + Y+ V N Sbjct: 1 MQKGTVKWFNPTKGYGFIRP----TSGDKDVFVHISAVERAGLSTLNENQTIEYELVDN- 55 Query: 61 ANGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 -RGKTSAENLKV 66 >gi|209884462|ref|YP_002288319.1| hypothetical protein OCAR_5322 [Oligotropha carboxidovorans OM5] gi|209872658|gb|ACI92454.1| conserved domain protein [Oligotropha carboxidovorans OM5] Length = 69 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G+DVF+H SAV AGL L EGQ V ++ ++ GK Sbjct: 4 GTVKWFNGQKGFGFIAPQ---DGGNDVFVHISAVERAGLTGLAEGQKVEFEAKTDNMRGK 60 Query: 65 YSAENLKLV 73 SAENL LV Sbjct: 61 TSAENLSLV 69 >gi|86748914|ref|YP_485410.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris HaA2] gi|91977978|ref|YP_570637.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris BisB5] gi|148258227|ref|YP_001242812.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp. BTAi1] gi|192292560|ref|YP_001993165.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] gi|86571942|gb|ABD06499.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris HaA2] gi|91684434|gb|ABE40736.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB5] gi|146410400|gb|ABQ38906.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1] gi|192286309|gb|ACF02690.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] Length = 70 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + +GK Sbjct: 4 GTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60 Query: 65 YSAENLK 71 SA+NL+ Sbjct: 61 SSADNLR 67 >gi|153009006|ref|YP_001370221.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151560894|gb|ABS14392.1| putative cold-shock DNA-binding domain protein [Ochrobactrum anthropi ATCC 49188] Length = 69 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ Sbjct: 4 GTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLATLDEGQKVSYEIVQDRRSGR 60 Query: 65 YSAENL 70 SA+NL Sbjct: 61 SSADNL 66 >gi|27375170|ref|NP_766699.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27348306|dbj|BAC45324.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 77 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 50/71 (70%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+NP KGYGFI P+ + G+DVF+H SAV AG +L EG V+Y+ V N + Sbjct: 10 VALGTVKWFNPTKGYGFIAPD---DGGNDVFVHISAVEKAGYTSLVEGAKVSYELVMNRS 66 Query: 62 NGKYSAENLKL 72 GK +AENL+L Sbjct: 67 -GKQAAENLRL 76 >gi|115525742|ref|YP_782653.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|209886524|ref|YP_002290381.1| hypothetical protein OCAR_7413 [Oligotropha carboxidovorans OM5] gi|299132279|ref|ZP_07025474.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] gi|115519689|gb|ABJ07673.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisA53] gi|209874720|gb|ACI94516.1| conserved domain protein [Oligotropha carboxidovorans OM5] gi|298592416|gb|EFI52616.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] Length = 70 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + +GK Sbjct: 4 GTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60 Query: 65 YSAENLK 71 SA+NL+ Sbjct: 61 SSADNLR 67 >gi|146338131|ref|YP_001203179.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278] gi|146190937|emb|CAL74942.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278] Length = 70 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + +GK Sbjct: 4 GTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60 Query: 65 YSAENLK 71 SA+NL+ Sbjct: 61 SSADNLR 67 >gi|92116020|ref|YP_575749.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91798914|gb|ABE61289.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 68 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + +GK Sbjct: 2 GTVKWFNATKGYGFIQPD---DGGNDVFVHVSAVERAGLGTLREGQKISYEIVADRRSGK 58 Query: 65 YSAENLK 71 SA+NL+ Sbjct: 59 SSADNLR 65 >gi|62290382|ref|YP_222175.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|189024609|ref|YP_001935377.1| Cold-shock DNA-binding domain protein [Brucella abortus S19] gi|254689680|ref|ZP_05152934.1| cold shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|254694170|ref|ZP_05155998.1| cold shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|254697823|ref|ZP_05159651.1| cold shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730712|ref|ZP_05189290.1| cold shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|256257931|ref|ZP_05463467.1| cold shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260546920|ref|ZP_05822659.1| cold-shock DNA-binding domain-containing protein [Brucella abortus NCTC 8038] gi|260755213|ref|ZP_05867561.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260758433|ref|ZP_05870781.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260762259|ref|ZP_05874602.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|261214476|ref|ZP_05928757.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|62196514|gb|AAX74814.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|189020181|gb|ACD72903.1| Cold-shock DNA-binding domain protein [Brucella abortus S19] gi|260095970|gb|EEW79847.1| cold-shock DNA-binding domain-containing protein [Brucella abortus NCTC 8038] gi|260668751|gb|EEX55691.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672691|gb|EEX59512.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675321|gb|EEX62142.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260916083|gb|EEX82944.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 69 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ Sbjct: 4 GTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 60 Query: 65 YSAENL 70 SA+NL Sbjct: 61 SSADNL 66 >gi|75674509|ref|YP_316930.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255] gi|85713497|ref|ZP_01044487.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] gi|74419379|gb|ABA03578.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi Nb-255] gi|85699401|gb|EAQ37268.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] Length = 68 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + +GK Sbjct: 2 GTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 58 Query: 65 YSAENLK 71 SA+NL+ Sbjct: 59 SSADNLR 65 >gi|300023882|ref|YP_003756493.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525703|gb|ADJ24172.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 69 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G G+DVF+H SAV AGL L EGQ ++++ V + Sbjct: 1 MQTGTVKWFNSQKGFGFIQPDGG---GNDVFVHISAVERAGLNGLNEGQKISFEIVADRR 57 Query: 62 NGKYSAENLKLV 73 +GK SA+NL+ V Sbjct: 58 SGKSSADNLRPV 69 >gi|163793339|ref|ZP_02187314.1| pyridoxal phosphate biosynthetic protein PdxJ [alpha proteobacterium BAL199] gi|159181141|gb|EDP65656.1| pyridoxal phosphate biosynthetic protein PdxJ [alpha proteobacterium BAL199] Length = 70 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G G D F+H SAV +GL +L EGQ V Y+ V + +GK Sbjct: 4 GTVKWFNAQKGFGFIEPDGG---GSDAFVHISAVERSGLSDLREGQKVDYELVSDRKSGK 60 Query: 65 YSAENLKLV 73 SA+NLK++ Sbjct: 61 MSADNLKVL 69 >gi|288962373|ref|YP_003452668.1| cold shock protein [Azospirillum sp. B510] gi|288914639|dbj|BAI76124.1| cold shock protein [Azospirillum sp. B510] Length = 69 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE G DVF+H SAV AGL +L +GQ ++Y+ ++ GK Sbjct: 4 GTVKWFNSTKGFGFIQPE---SGGPDVFVHISAVERAGLRSLVDGQKISYEEQRDPKRGK 60 Query: 65 YSAENLKLV 73 SAENLK V Sbjct: 61 TSAENLKAV 69 >gi|17986801|ref|NP_539435.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M] gi|17982433|gb|AAL51699.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M] Length = 101 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ Sbjct: 36 GTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 92 Query: 65 YSAENL 70 SA+NL Sbjct: 93 SSADNL 98 >gi|237815887|ref|ZP_04594884.1| cold-shock family protein [Brucella abortus str. 2308 A] gi|237789185|gb|EEP63396.1| cold-shock family protein [Brucella abortus str. 2308 A] Length = 110 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ Sbjct: 45 GTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 101 Query: 65 YSAENL 70 SA+NL Sbjct: 102 SSADNL 107 >gi|82700304|ref|YP_414878.1| cold shock DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|297248768|ref|ZP_06932486.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv. 5 str. B3196] gi|82616405|emb|CAJ11468.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus 2308] gi|297175937|gb|EFH35284.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv. 5 str. B3196] Length = 101 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ Sbjct: 36 GTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 92 Query: 65 YSAENL 70 SA+NL Sbjct: 93 SSADNL 98 >gi|239832368|ref|ZP_04680697.1| cold-shock family protein [Ochrobactrum intermedium LMG 3301] gi|239824635|gb|EEQ96203.1| cold-shock family protein [Ochrobactrum intermedium LMG 3301] Length = 110 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ Sbjct: 45 GTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLATLDEGQKVSYEIVQDRRSGR 101 Query: 65 YSAENL 70 SA+NL Sbjct: 102 SSADNL 107 >gi|217977240|ref|YP_002361387.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] gi|217502616|gb|ACK50025.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] Length = 70 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G+D F+H SAV AG+ +L EGQ V ++ V + +GK Sbjct: 4 GTVKWFNSQKGFGFIAPD---DGGNDAFVHISAVERAGIGDLQEGQKVGFELVADRKSGK 60 Query: 65 YSAENLKLV 73 SA+NLKL+ Sbjct: 61 MSADNLKLL 69 >gi|92118897|ref|YP_578626.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91801791|gb|ABE64166.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 69 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G G+DVF+H SAV AGL L EGQ V+++ + GK Sbjct: 4 GTVKWFNSQKGFGFIQPDGG---GNDVFVHISAVQRAGLNGLGEGQKVSFETKTDKMRGK 60 Query: 65 YSAENLKL 72 SAENL L Sbjct: 61 ASAENLSL 68 >gi|148258722|ref|YP_001243307.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp. BTAi1] gi|146410895|gb|ABQ39401.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1] Length = 69 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 3/69 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V +D + G Sbjct: 3 QGTVKWFNGQKGFGFIQPQ---DGGTDVFVHISAVERAGLGGLAEGQKVNFDLKTDKMRG 59 Query: 64 KYSAENLKL 72 K SAENL L Sbjct: 60 KVSAENLSL 68 >gi|319403844|emb|CBI77430.1| cold shock protein [Bartonella rochalimae ATCC BAA-1498] Length = 69 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 50/68 (73%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW+N +KG+GFI P +GS DVF+H SAV +GL NL EGQ ++YD +Q+ + Sbjct: 3 KGTVKWFNTNKGFGFIQPNDGSA----DVFVHISAVERSGLHNLNEGQKISYDVLQDRRS 58 Query: 63 GKYSAENL 70 GK++A NL Sbjct: 59 GKFAAGNL 66 >gi|27379097|ref|NP_770626.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27352247|dbj|BAC49251.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 69 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + DVF+H SAV AGL +L EGQ V++D V + +GK Sbjct: 4 GTVKWFNTQKGYGFIQPDDGQK---DVFVHISAVERAGLSSLNEGQKVSFDIVADRRSGK 60 Query: 65 YSAENLKL 72 SA+NL++ Sbjct: 61 SSADNLRV 68 >gi|27379706|ref|NP_771235.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27352858|dbj|BAC49860.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 75 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ + G DVF+H SAV AG+ L EGQ V+++ V + Sbjct: 7 MNTGTVKWFNGQKGFGFIQPD---QGGQDVFVHISAVERAGMSTLNEGQKVSFEIVADRR 63 Query: 62 NGKYSAENLKLV 73 GK +AENL+ V Sbjct: 64 TGKSAAENLRAV 75 >gi|197106095|ref|YP_002131472.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] gi|196479515|gb|ACG79043.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] Length = 69 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 49/67 (73%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G+DVF+H SAV AG+ NL+EGQ V+++ ++ +GK Sbjct: 4 GTVKWFNGQKGFGFIQPD---DGGNDVFVHISAVERAGMSNLSEGQKVSFELQKDSRSGK 60 Query: 65 YSAENLK 71 SAE L+ Sbjct: 61 MSAEQLQ 67 >gi|86749297|ref|YP_485793.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris HaA2] gi|91977723|ref|YP_570382.1| cold-shock protein, DNA-binding [Rhodopseudomonas palustris BisB5] gi|86572325|gb|ABD06882.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris HaA2] gi|91684179|gb|ABE40481.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB5] Length = 69 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P + G+DVF+H SAV AGL L EGQ V ++ + GK Sbjct: 4 GTVKWFNGQKGFGFIAP---NDGGNDVFVHISAVERAGLSGLAEGQKVNFELKTDKMRGK 60 Query: 65 YSAENLKLV 73 SAENL+LV Sbjct: 61 TSAENLELV 69 >gi|90425189|ref|YP_533559.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90107203|gb|ABD89240.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB18] Length = 70 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + +GK Sbjct: 4 GTVKWFNATKGFGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60 Query: 65 YSAENLK 71 SA+NL+ Sbjct: 61 SSADNLR 67 >gi|294085741|ref|YP_003552501.1| cold-shock DNA-binding domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292665316|gb|ADE40417.1| Cold-shock DNA-binding domain protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 76 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 53/72 (73%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFI P+ +SG+DVF+H +AV ++GL L EGQ VTY+ ++ Sbjct: 8 MSQGTVKWFNTQKGYGFIDPD---DSGNDVFVHITAVQNSGLNGLNEGQKVTYE-LEEQR 63 Query: 62 NGKYSAENLKLV 73 NGK +A NL++V Sbjct: 64 NGKMAAVNLEVV 75 >gi|163850319|ref|YP_001638362.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218528876|ref|YP_002419692.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240137390|ref|YP_002961861.1| major cold shock protein [Methylobacterium extorquens AM1] gi|254559570|ref|YP_003066665.1| major cold shock protein [Methylobacterium extorquens DM4] gi|163661924|gb|ABY29291.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218521179|gb|ACK81764.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240007358|gb|ACS38584.1| major cold shock protein [Methylobacterium extorquens AM1] gi|254266848|emb|CAX22647.1| major cold shock protein [Methylobacterium extorquens DM4] Length = 69 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H SAV AGL NL EGQ V+Y+ + + +GK Sbjct: 4 GTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGLRNLVEGQKVSYEVLTDKRSGK 60 Query: 65 YSAENLKLV 73 +A NL+ V Sbjct: 61 DAAGNLQAV 69 >gi|85714683|ref|ZP_01045670.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] gi|85698568|gb|EAQ36438.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] Length = 90 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P G+DVF+H SAV AGL L EGQ VT++ + GK Sbjct: 25 GTVKWFNGQKGFGFIQPN---NGGNDVFVHISAVERAGLSGLNEGQQVTFEVKTDKMRGK 81 Query: 65 YSAENLKL 72 SAENL L Sbjct: 82 VSAENLSL 89 >gi|192292246|ref|YP_001992851.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] gi|192285995|gb|ACF02376.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] Length = 69 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P ++ G+DVF+H SAV AGL L EGQ V+++ + GK Sbjct: 4 GTVKWFNGQKGFGFIAP---SDGGNDVFVHISAVERAGLTGLAEGQKVSFEVKTDKMRGK 60 Query: 65 YSAENLKL 72 SAENL L Sbjct: 61 SSAENLAL 68 >gi|319406855|emb|CBI80490.1| cold shock protein [Bartonella sp. 1-1C] Length = 69 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KG+GFI P +GS DVF+H SAV +GL NL EGQ ++YD +Q+ Sbjct: 1 MSKGTVKWFNSNKGFGFIQPNDGSA----DVFVHISAVERSGLQNLNEGQKISYDVLQDR 56 Query: 61 ANGKYSAENL 70 +GK++A NL Sbjct: 57 RSGKFAAGNL 66 >gi|39936462|ref|NP_948738.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009] gi|39650318|emb|CAE28840.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009] Length = 75 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P ++ G+DVF+H SAV AGL L EGQ V+++ + GK Sbjct: 10 GTVKWFNGQKGFGFIAP---SDGGNDVFVHISAVERAGLTGLAEGQKVSFEVKTDKMRGK 66 Query: 65 YSAENLKL 72 SAENL L Sbjct: 67 SSAENLAL 74 >gi|323136224|ref|ZP_08071306.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] gi|322398298|gb|EFY00818.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] Length = 70 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G DVF+H SAV AGL +L EGQ V+Y+ V + GK Sbjct: 4 GTVKWFNSQKGFGFIQPDAG---GADVFVHISAVERAGLRDLLEGQKVSYEVVVDTRRGK 60 Query: 65 YSAENLKL 72 SA+NL++ Sbjct: 61 SSADNLQI 68 >gi|90425745|ref|YP_534115.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90107759|gb|ABD89796.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB18] Length = 66 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI P + G DVF+H SAV AGL L EGQ V ++ V N G Sbjct: 3 KGTVKWFNATKGFGFIQP---SNGGKDVFVHISAVEKAGLSTLNEGQTVEFEEVAN--RG 57 Query: 64 KYSAENLKL 72 K SAENLK+ Sbjct: 58 KTSAENLKV 66 >gi|86356809|ref|YP_468701.1| cold shock protein [Rhizobium etli CFN 42] gi|86280911|gb|ABC89974.1| cold shock protein [Rhizobium etli CFN 42] Length = 69 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI P+ GST DVF+H SAV AG+ LTEGQ V YD V++ +G Sbjct: 4 GVVKWFNGTKGFGFIQPDDGST----DVFVHISAVERAGMRELTEGQKVRYDLVRDKRSG 59 Query: 64 KYSAENLK 71 K SA+NL+ Sbjct: 60 KNSADNLQ 67 >gi|115526308|ref|YP_783219.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115520255|gb|ABJ08239.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisA53] Length = 66 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP KGYGFI P + G DVF+H SAV+ AGL L EGQ + ++ V N G+ Sbjct: 4 GTVKWFNPTKGYGFIQP---SNGGKDVFVHISAVSRAGLSTLNEGQSLEFEEVAN--RGR 58 Query: 65 YSAENLKL 72 SAENL++ Sbjct: 59 TSAENLRV 66 >gi|92118046|ref|YP_577775.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91800940|gb|ABE63315.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 69 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G G D+F+H SAV AGL +L +GQ V+++ + GK Sbjct: 4 GTVKWFNATKGFGFIQPDGG---GQDIFVHTSAVERAGLSSLNDGQKVSFEAKTDSMRGK 60 Query: 65 YSAENLKL 72 SAENL++ Sbjct: 61 TSAENLRV 68 >gi|256114052|ref|ZP_05454822.1| cold shock protein CSPA [Brucella melitensis bv. 3 str. Ether] gi|265995386|ref|ZP_06107943.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262766499|gb|EEZ12288.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 69 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G +VF+H SAV AGL L EGQ V+Y+ VQ+ +G+ Sbjct: 4 GTVKWFNTTKGFGFIQPD---QGGTNVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 60 Query: 65 YSAENL 70 SA+NL Sbjct: 61 SSADNL 66 >gi|316933345|ref|YP_004108327.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601059|gb|ADU43594.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 69 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P ++ G+DVF+H SAV AGL L EGQ V+++ + GK Sbjct: 4 GTVKWFNGQKGFGFIAP---SDGGNDVFVHISAVERAGLSGLAEGQQVSFEVKVDKMRGK 60 Query: 65 YSAENLKL 72 SAENL L Sbjct: 61 SSAENLAL 68 >gi|163867963|ref|YP_001609167.1| cold shock protein [Bartonella tribocorum CIP 105476] gi|161017614|emb|CAK01172.1| cold shock protein [Bartonella tribocorum CIP 105476] Length = 69 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P ++ DVF+H SAV +GL NL EGQ V+YD +Q+ +GK Sbjct: 4 GTVKWFNTTKGFGFIQP---SDGSADVFVHISAVERSGLSNLNEGQKVSYDVLQDRRSGK 60 Query: 65 YSAENL 70 ++A NL Sbjct: 61 FAAGNL 66 >gi|170745542|ref|YP_001766999.1| cold-shock DNA-binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170659143|gb|ACB28197.1| cold-shock DNA-binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 69 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H SAV AGL +L EGQ + YD + +GK Sbjct: 4 GTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGLRSLNEGQKIAYDVEADRRSGK 60 Query: 65 YSAENLK 71 SA NLK Sbjct: 61 ESAANLK 67 >gi|49475887|ref|YP_033928.1| cold shock protein [Bartonella henselae str. Houston-1] gi|49238695|emb|CAF27946.1| Cold shock protein [Bartonella henselae str. Houston-1] Length = 69 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P ++ DVF+H SAV +GL NL EGQ V+YD +Q+ +GK Sbjct: 4 GTVKWFNTTKGFGFIQP---SDGSADVFVHISAVERSGLSNLNEGQKVSYDVLQDRRSGK 60 Query: 65 YSAENL 70 ++A NL Sbjct: 61 FAAGNL 66 >gi|23011600|ref|ZP_00051912.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 69 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ G DVF+H SAV AGL NL EGQ V+Y+ + + +GK Sbjct: 4 GTVKWFNETKGYGFIQPD---NGGKDVFVHISAVERAGLRNLVEGQKVSYEVLTDKRSGK 60 Query: 65 YSAENLKLV 73 +A NL+ V Sbjct: 61 DAAGNLQAV 69 >gi|85717084|ref|ZP_01048045.1| cold shock protein [Nitrobacter sp. Nb-311A] gi|85696122|gb|EAQ34019.1| cold shock protein [Nitrobacter sp. Nb-311A] Length = 70 Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+N KGYGFI PE G DVF+H SAV AG +L EG V+Y+ V N Sbjct: 4 VAIGTVKWFNGQKGYGFIEPE---SGGKDVFVHISAVEKAGFTSLAEGAKVSYEVVMN-- 58 Query: 62 NGKYSAENLKL 72 GK SAENL++ Sbjct: 59 RGKESAENLRI 69 >gi|296447314|ref|ZP_06889242.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] gi|296255179|gb|EFH02278.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] Length = 69 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ ++G DVF+H SAV AGL +L EGQ + Y+ Q+ GK Sbjct: 4 GTVKWFNAQKGYGFIQPD---DNGKDVFVHISAVERAGLRDLREGQKLDYELTQDRRTGK 60 Query: 65 YSAENLK 71 +A+ LK Sbjct: 61 SAADRLK 67 >gi|159185613|ref|NP_357478.2| cold shock protein [Agrobacterium tumefaciens str. C58] gi|159140747|gb|AAK90263.2| cold shock protein [Agrobacterium tumefaciens str. C58] Length = 69 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ G DVF+H SAV AG+ +L +GQ ++Y+ VQ+ Sbjct: 1 MNTGTVKWFNATKGFGFIQPD---NGGTDVFVHISAVERAGMRSLNDGQKISYEIVQDRR 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKSSADNLQ 67 >gi|27377058|ref|NP_768587.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|12620649|gb|AAG60925.1|AF322013_44 ID534 [Bradyrhizobium japonicum] gi|27350201|dbj|BAC47212.1| blr1947 [Bradyrhizobium japonicum USDA 110] Length = 120 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+NP KGYGF+ P+ + G DVF+H SAV AG +L EG V Y+ V N Sbjct: 53 VALGTVKWFNPTKGYGFVAPD---DGGKDVFVHISAVEKAGYTSLVEGAKVGYELVTNR- 108 Query: 62 NGKYSAENLKL 72 +GK +AENL+L Sbjct: 109 SGKQAAENLRL 119 >gi|260432172|ref|ZP_05786143.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416000|gb|EEX09259.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 68 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE G DVF+H SA+ +GL L + Q VTYD VQ+ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPE---TGGKDVFVHISALERSGLTGLADNQKVTYD-VQSGRDGR 59 Query: 65 YSAENLKLV 73 SAENL+LV Sbjct: 60 ESAENLQLV 68 >gi|27376556|ref|NP_768085.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27349697|dbj|BAC46710.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 70 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ ++Y+ V + +GK Sbjct: 4 GTVKWFNATKGFGFIQPD---DGGKDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK 60 Query: 65 YSAENLK 71 +A+NL+ Sbjct: 61 SAADNLR 67 >gi|296446940|ref|ZP_06888875.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] gi|296255507|gb|EFH02599.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] Length = 69 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G DVF+H SAV AG+ L EGQ + +D V+++ +GK Sbjct: 4 GTVKWFNATKGFGFIQPD---NGGADVFVHISAVERAGMQTLAEGQKIQFDLVRDNKSGK 60 Query: 65 YSAENLKL 72 SA NL++ Sbjct: 61 SSAGNLQI 68 >gi|188580080|ref|YP_001923525.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] gi|179343578|gb|ACB78990.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] Length = 69 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ G DVF+H SAV AGL NL EGQ ++Y+ + + +GK Sbjct: 4 GTVKWFNETKGYGFIQPD---NGGKDVFVHISAVERAGLRNLVEGQKISYEVLTDKRSGK 60 Query: 65 YSAENLKLV 73 +A NL+ V Sbjct: 61 DAAGNLQAV 69 >gi|92116417|ref|YP_576146.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91799311|gb|ABE61686.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 69 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G G D+F+H SAV AGL +L +GQ V+++ + GK Sbjct: 4 GTVKWFNATKGFGFIQPDGG---GQDIFVHISAVERAGLSSLNDGQKVSFEAKTDSMRGK 60 Query: 65 YSAENLKL 72 SAENL++ Sbjct: 61 TSAENLRV 68 >gi|190890873|ref|YP_001977415.1| cold shock protein [Rhizobium etli CIAT 652] gi|218463533|ref|ZP_03503624.1| cold shock protein [Rhizobium etli Kim 5] gi|218507653|ref|ZP_03505531.1| cold shock protein [Rhizobium etli Brasil 5] gi|218514329|ref|ZP_03511169.1| cold shock protein [Rhizobium etli 8C-3] gi|218663162|ref|ZP_03519092.1| cold shock protein [Rhizobium etli IE4771] gi|218671488|ref|ZP_03521158.1| cold shock protein [Rhizobium etli GR56] gi|190696152|gb|ACE90237.1| cold shock protein [Rhizobium etli CIAT 652] gi|327190699|gb|EGE57781.1| cold shock protein [Rhizobium etli CNPAF512] Length = 69 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI P+ GST DVF+H SAV AG+ LTEGQ V YD V++ +G Sbjct: 4 GVVKWFNGTKGFGFIQPDDGST----DVFVHISAVERAGMRELTEGQKVRYDLVRDKRSG 59 Query: 64 KYSAENLK 71 K +A+NL+ Sbjct: 60 KNAADNLQ 67 >gi|295697365|ref|YP_003590603.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] gi|295412967|gb|ADG07459.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] Length = 67 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 5/64 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+NPDKGYGFI S E G+DVF+H SA+ S G L+EGQLV +D VQ A G Sbjct: 2 QGRVKWFNPDKGYGFI----SREDGEDVFVHYSAIQSQGFRTLSEGQLVEFDIVQG-ARG 56 Query: 64 KYSA 67 +A Sbjct: 57 PQAA 60 >gi|16519680|ref|NP_443800.1| putative cold-shock DNA-binding domain-containing protein [Sinorhizobium fredii NGR234] gi|2493775|sp|P55390|Y4CH_RHISN RecName: Full=Probable cold shock protein y4cH gi|2182333|gb|AAB92423.1| putative cold-shock DNA-binding domain-containing protein [Sinorhizobium fredii NGR234] Length = 69 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G++KW+N KG+GFI P+ + DVF+H SAV AGL L +GQ ++Y+ V++ Sbjct: 1 MMATGTVKWFNATKGFGFIQPDDGSA---DVFVHISAVERAGLRELKDGQKISYELVKDR 57 Query: 61 ANGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 KSGKMSADNLQ 68 >gi|27378265|ref|NP_769794.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27351412|dbj|BAC48419.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 69 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G+DVF+H SAV AGL L EGQ V ++ + GK Sbjct: 4 GTVKWFNGQKGFGFIQPD---DGGNDVFVHVSAVERAGLSGLAEGQKVNFEAKTDKMRGK 60 Query: 65 YSAENLKL 72 SAENL L Sbjct: 61 VSAENLSL 68 >gi|150377524|ref|YP_001314119.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150032071|gb|ABR64186.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] Length = 68 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 48/67 (71%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + DVF+H SAV AGL +L +GQ +TY+ V++ +GK Sbjct: 4 GTVKWFNATKGFGFIQPD---DGSPDVFVHISAVERAGLQDLKDGQKITYELVKDRKSGK 60 Query: 65 YSAENLK 71 SA+NL+ Sbjct: 61 MSADNLR 67 >gi|329849353|ref|ZP_08264199.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] gi|328841264|gb|EGF90834.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] Length = 67 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/67 (53%), Positives = 45/67 (67%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP KG+GFI P TE G DVF+H SAV AGL +L EGQ + Y Q+ GK Sbjct: 4 GTVKWFNPTKGFGFIEP---TEGGGDVFVHISAVERAGLRSLNEGQKIEYQVAQD--RGK 58 Query: 65 YSAENLK 71 SA +LK Sbjct: 59 ASAVDLK 65 >gi|91205892|ref|YP_538247.1| cold shock-like protein [Rickettsia bellii RML369-C] gi|157826747|ref|YP_001495811.1| cold shock-like protein [Rickettsia bellii OSU 85-389] gi|91069436|gb|ABE05158.1| Cold shock-like protein [Rickettsia bellii RML369-C] gi|157802051|gb|ABV78774.1| Cold shock-like protein [Rickettsia bellii OSU 85-389] Length = 100 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP K +GFI E G DVF+HRSAV +AGL L EGQ V +D D NGK Sbjct: 37 GKVKWFNPTKNFGFIEQE---NGGKDVFVHRSAVDAAGLAGLNEGQDVIFDL--EDKNGK 91 Query: 65 YSAENLKL 72 SA NL++ Sbjct: 92 ISAVNLRI 99 >gi|114569736|ref|YP_756416.1| cold-shock DNA-binding protein family protein [Maricaulis maris MCS10] gi|114340198|gb|ABI65478.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10] Length = 69 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 5/70 (7%) Query: 5 GSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFI PE GST DVF+H SAV +G+ +TEGQ ++++ VQ+ +G Sbjct: 4 GTVKFFNTTKGFGFIQPEDGST----DVFVHISAVERSGMTTITEGQKLSFEVVQDKRSG 59 Query: 64 KYSAENLKLV 73 K +AENL+ V Sbjct: 60 KNAAENLQAV 69 >gi|134034058|sp|Q1RHK6|CSPA_RICBR RecName: Full=Cold shock-like protein CspA Length = 70 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP K +GFI E G DVF+HRSAV +AGL L EGQ V +D D NGK Sbjct: 7 GKVKWFNPTKNFGFIEQE---NGGKDVFVHRSAVDAAGLAGLNEGQDVIFDL--EDKNGK 61 Query: 65 YSAENLKL 72 SA NL++ Sbjct: 62 ISAVNLRI 69 >gi|144899530|emb|CAM76394.1| Cold-shock protein, DNA-binding [Magnetospirillum gryphiswaldense MSR-1] Length = 70 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + +D F+H SAV +G+ +L EGQ + Y+ V + +GK Sbjct: 4 GTVKWFNAQKGFGFIAPD---DGSNDAFVHISAVERSGIGDLREGQKIGYELVADRRSGK 60 Query: 65 YSAENLKLV 73 SA+NLKLV Sbjct: 61 MSADNLKLV 69 >gi|154245503|ref|YP_001416461.1| cold-shock DNA-binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154159588|gb|ABS66804.1| putative cold-shock DNA-binding domain protein [Xanthobacter autotrophicus Py2] Length = 70 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ G D F+H SAV AG+ +L EGQ V ++ V + +GK Sbjct: 4 GTVKWFNAQKGFGFITPD---SGGSDAFVHISAVERAGMSDLREGQKVAFELVTDRKSGK 60 Query: 65 YSAENLK 71 SA+ LK Sbjct: 61 LSADQLK 67 >gi|75676560|ref|YP_318981.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255] gi|74421430|gb|ABA05629.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi Nb-255] Length = 69 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P + G+DVF+H SAV AGL L EGQ V ++ + GK Sbjct: 4 GTVKWFNGQKGFGFIQP---NDGGNDVFVHISAVERAGLSGLNEGQQVNFELKTDKMRGK 60 Query: 65 YSAENLKL 72 SAENL L Sbjct: 61 VSAENLSL 68 >gi|92118260|ref|YP_577989.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91801154|gb|ABE63529.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 69 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P + G DVF+H SAV AGL L EGQ V ++ + GK Sbjct: 4 GTVKWFNGQKGFGFIQP---NDGGSDVFVHISAVERAGLTGLAEGQKVNFELKTDKMRGK 60 Query: 65 YSAENLKL 72 SAENL L Sbjct: 61 VSAENLSL 68 >gi|319408889|emb|CBI82546.1| cold shock protein [Bartonella schoenbuchensis R1] Length = 70 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 3/73 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KG+GFI P + DVF+H SAV +GL NL EGQ ++Y+ VQ+ Sbjct: 1 MSSTGTVKWFNTTKGFGFIQPN---DGSADVFVHISAVERSGLSNLNEGQKISYEVVQDR 57 Query: 61 ANGKYSAENLKLV 73 +GK +A NL ++ Sbjct: 58 RSGKLAAGNLAVL 70 >gi|261222631|ref|ZP_05936912.1| cold-shock DNA-binding domain-containing protein [Brucella ceti B1/94] gi|261318104|ref|ZP_05957301.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261758673|ref|ZP_06002382.1| cold-shock DNA-binding domain-containing protein [Brucella sp. F5/99] gi|265984538|ref|ZP_06097273.1| cold-shock DNA-binding domain-containing protein [Brucella sp. 83/13] gi|265999381|ref|ZP_05466081.2| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260921215|gb|EEX87868.1| cold-shock DNA-binding domain-containing protein [Brucella ceti B1/94] gi|261297327|gb|EEY00824.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261738657|gb|EEY26653.1| cold-shock DNA-binding domain-containing protein [Brucella sp. F5/99] gi|263093577|gb|EEZ17602.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|264663130|gb|EEZ33391.1| cold-shock DNA-binding domain-containing protein [Brucella sp. 83/13] Length = 64 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 3/64 (4%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ S Sbjct: 1 MKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGRSS 57 Query: 67 AENL 70 A+NL Sbjct: 58 ADNL 61 >gi|167647685|ref|YP_001685348.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp. K31] gi|167350115|gb|ABZ72850.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31] Length = 179 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP KG+GFI PE + G DVF+H +AV +GL L EG VTY+ ++ +GK Sbjct: 4 GVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVTYEMEEDRRSGK 60 Query: 65 YSAENLKLV 73 SA NL++ Sbjct: 61 TSAGNLRVT 69 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFI P+ G D+F+H SAV AGL L EGQ V Y+ Q+ +GK S Sbjct: 116 VKWFNSTKGFGFIQPD---NGGGDIFVHISAVERAGLRGLNEGQQVGYELEQDRRSGKTS 172 Query: 67 AENLKLV 73 A NL+++ Sbjct: 173 AGNLRIL 179 >gi|146295937|ref|YP_001179708.1| cold-shock DNA-binding domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409513|gb|ABP66517.1| cold-shock DNA-binding protein family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 66 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+NP+KGYGFI STE+GDDVF+H SA+ G L EGQ+V +D V+++ Sbjct: 2 RGRVKWFNPEKGYGFI----STENGDDVFVHFSAINMEGYKTLAEGQMVEFDVVKSE 54 >gi|260884227|ref|ZP_05895841.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260873755|gb|EEX80824.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] Length = 64 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 3/64 (4%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ S Sbjct: 1 MKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGRSS 57 Query: 67 AENL 70 A+NL Sbjct: 58 ADNL 61 >gi|116251065|ref|YP_766903.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|209548412|ref|YP_002280329.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|241203661|ref|YP_002974757.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115255713|emb|CAK06794.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|209534168|gb|ACI54103.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240857551|gb|ACS55218.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 69 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N KG+GFI P+ GST DVF+H SAV AG+ L EGQ + YD V++ Sbjct: 1 MNSGVVKWFNGTKGFGFIQPDDGST----DVFVHISAVERAGMRELVEGQKIRYDLVRDK 56 Query: 61 ANGKYSAENLK 71 +GK SA+NL+ Sbjct: 57 KSGKNSADNLQ 67 >gi|77462572|ref|YP_352076.1| cold-shock DNA-binding protein family protein [Rhodobacter sphaeroides 2.4.1] gi|126461506|ref|YP_001042620.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221638430|ref|YP_002524692.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] gi|332557457|ref|ZP_08411779.1| cold shock protein [Rhodobacter sphaeroides WS8N] gi|77386990|gb|ABA78175.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides 2.4.1] gi|126103170|gb|ABN75848.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17029] gi|221159211|gb|ACM00191.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] gi|332275169|gb|EGJ20484.1| cold shock protein [Rhodobacter sphaeroides WS8N] Length = 68 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P G ++ DVF+H SA+ AG+ L +GQ VT+D ++ D NG+ Sbjct: 4 GTVKWFNATKGFGFIAPAGGSK---DVFVHISALERAGIRQLNDGQAVTFD-LETDRNGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESATNLAL 67 >gi|304321935|ref|YP_003855578.1| Cold-shock DNA-binding domain protein [Parvularcula bermudensis HTCC2503] gi|303300837|gb|ADM10436.1| Cold-shock DNA-binding domain protein [Parvularcula bermudensis HTCC2503] Length = 69 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI P+ E G DVF+H SAV AGL L + Q V+Y+ VQ D G+ Sbjct: 4 GTVKWFNAEKGFGFIKPD---EGGQDVFVHISAVQEAGLKGLDDNQRVSYEMVQ-DRRGR 59 Query: 65 YSAENLKLV 73 SA LKL+ Sbjct: 60 SSAGELKLM 68 >gi|119385862|ref|YP_916917.1| cold-shock DNA-binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119376457|gb|ABL71221.1| cold-shock DNA-binding protein family [Paracoccus denitrificans PD1222] Length = 68 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI PE ++ DVF+H SA+ AG+ +L +GQ + YD ++ D NG+ Sbjct: 4 GTVKWFNSNKGFGFIAPETGSK---DVFIHISALERAGIHHLNDGQAIAYD-IERDRNGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESATNLVL 67 >gi|92118346|ref|YP_578075.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91801240|gb|ABE63615.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 73 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+N KG+GFI P+ G DVF+H SAV AGL +L EG V+Y+ V N Sbjct: 7 VATGTVKWFNATKGFGFIQPD---SGGKDVFVHISAVERAGLSSLNEGAKVSYEVVAN-- 61 Query: 62 NGKYSAENLKL 72 GK SAENL++ Sbjct: 62 RGKESAENLRV 72 >gi|227818999|ref|YP_002822970.1| cold shock protein Y4CH [Sinorhizobium fredii NGR234] gi|227337998|gb|ACP22217.1| probable cold shock protein Y4CH [Sinorhizobium fredii NGR234] Length = 69 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + DVF+H SAV AGL L EGQ V+++ Q+ +GK Sbjct: 4 GTVKWFNSTKGFGFIAPD---DGSPDVFVHISAVERAGLSTLKEGQKVSFEATQDRRSGK 60 Query: 65 YSAENLKLV 73 SA+NL+ + Sbjct: 61 TSADNLRAL 69 >gi|218681656|ref|ZP_03529457.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894] Length = 69 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI P+ GST DVF+H SAV AG+ L EGQ + YD V++ +G Sbjct: 4 GVVKWFNGTKGFGFIQPDDGST----DVFVHISAVERAGMRELVEGQKIRYDLVRDKRSG 59 Query: 64 KYSAENLK 71 K SA+NL+ Sbjct: 60 KNSADNLQ 67 >gi|170751748|ref|YP_001758008.1| cold-shock DNA-binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170658270|gb|ACB27325.1| cold-shock DNA-binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 69 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KGYGFI P+ + G DVF+H SAV AG+ NL EGQ + Y+ + + Sbjct: 1 MNTGTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGMRNLIEGQRIAYEILTDKR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKDAAGNLQ 67 >gi|68164476|gb|AAY87205.1| predicted cold shock family protein [uncultured bacterium BAC17H8] Length = 83 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 4/70 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI P+ E G+DVF+H +AV ++GL L EGQ V+Y+ + NG Sbjct: 17 QGTVKWFNTQKGYGFINPD---EDGNDVFVHITAVQNSGLTGLNEGQRVSYELAEQ-RNG 72 Query: 64 KYSAENLKLV 73 +++A +L +V Sbjct: 73 RFAAVDLSIV 82 >gi|319405285|emb|CBI78899.1| cold shock protein [Bartonella sp. AR 15-3] Length = 69 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 49/67 (73%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI P +GS DVF+H SA+ +GL +L EGQ ++YD +Q+ +G Sbjct: 4 GTVKWFNTNKGFGFIQPNDGSA----DVFVHISALERSGLHDLNEGQKISYDILQDRRSG 59 Query: 64 KYSAENL 70 K+SA NL Sbjct: 60 KFSAGNL 66 >gi|154251388|ref|YP_001412212.1| cold-shock DNA-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154155338|gb|ABS62555.1| putative cold-shock DNA-binding domain protein [Parvibaculum lavamentivorans DS-1] Length = 68 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KGYGFI P + G D+F+H SAV AG +L EGQ + Y+ V+ NG+ Sbjct: 4 GVVKWFNATKGYGFIAP---ADGGKDIFVHISAVERAGQKSLQEGQQIQYELVEGR-NGR 59 Query: 65 YSAENLKL 72 +SAENL L Sbjct: 60 FSAENLVL 67 >gi|323136343|ref|ZP_08071425.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] gi|322398417|gb|EFY00937.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] Length = 70 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI P+ G DVF+H SA+ AGL L EGQ V Y+ V + +GK Sbjct: 4 GVVKWFNANKGFGFIQPD---AGGADVFVHISALERAGLHGLAEGQKVGYELVVDKRSGK 60 Query: 65 YSAENLKL 72 +SA+ L+L Sbjct: 61 FSADALQL 68 >gi|170743586|ref|YP_001772241.1| cold-shock DNA-binding domain-containing protein [Methylobacterium sp. 4-46] gi|168197860|gb|ACA19807.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46] Length = 69 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KGYGFI P+ + G DVF+H SAV AGL L EGQ V+Y+ + Sbjct: 1 MNTGTVKWFNDQKGYGFIQPD---DGGKDVFVHISAVERAGLRGLAEGQKVSYELQTDKR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKVAAANLQ 67 >gi|146280323|ref|YP_001170479.1| hypothetical protein Rsph17025_4329 [Rhodobacter sphaeroides ATCC 17025] gi|145558564|gb|ABP73174.1| hypothetical protein Rsph17025_4329 [Rhodobacter sphaeroides ATCC 17025] Length = 68 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P G ++ DVF+H SA+ AG+ L +GQ VT+D ++ D NG+ Sbjct: 4 GTVKWFNTTKGFGFIAPAGGSK---DVFVHISALERAGIRQLDDGQAVTFD-LERDRNGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESATNLAL 67 >gi|85715497|ref|ZP_01046478.1| cold shock protein [Nitrobacter sp. Nb-311A] gi|85697692|gb|EAQ35568.1| cold shock protein [Nitrobacter sp. Nb-311A] Length = 70 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+N KGYGFI P+ G DVF+H SAV AGL +L EG ++Y+ V N Sbjct: 4 VATGTVKWFNGQKGYGFIQPD---SGGKDVFVHISAVERAGLNSLNEGDKISYEVVAN-- 58 Query: 62 NGKYSAENLKL 72 GK SAENL++ Sbjct: 59 RGKESAENLRV 69 >gi|118589767|ref|ZP_01547172.1| ATP/GTP-binding site motif A (P-loop) protein [Stappia aggregata IAM 12614] gi|118437853|gb|EAV44489.1| ATP/GTP-binding site motif A (P-loop) protein [Stappia aggregata IAM 12614] Length = 69 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI PE + DVF+H SAV AG+ +L EGQ V+++ VQ+ +GK Sbjct: 4 GTVKFFNTTKGFGFIQPE---DGASDVFVHISAVERAGMRSLVEGQKVSFEVVQDRRSGK 60 Query: 65 YSAENLKLV 73 +A+NL+ V Sbjct: 61 SAADNLQEV 69 >gi|260463314|ref|ZP_05811515.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|259030904|gb|EEW32179.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] Length = 69 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 47/67 (70%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + DVF+H SAV AG+ ++ EGQ V Y+ V+++ +GK Sbjct: 4 GTVKWFNATKGFGFIQPDDGSA---DVFVHISAVERAGMRDIVEGQKVGYEMVRDNKSGK 60 Query: 65 YSAENLK 71 SA+ LK Sbjct: 61 MSADQLK 67 >gi|220921802|ref|YP_002497103.1| cold-shock DNA-binding domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219946408|gb|ACL56800.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans ORS 2060] Length = 69 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KGYGFI P+ + G DVF+H SAV AGL L EGQ ++Y+ + Sbjct: 1 MNTGTVKWFNDQKGYGFIQPD---DGGKDVFVHISAVERAGLRGLVEGQKISYELQTDKR 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKVSAGNLQ 67 >gi|46202348|ref|ZP_00053353.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 91 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KGYGFI P+ G DVF+H SAV AGL L +GQ V++D ++ GK Sbjct: 26 GSVKWFNSTKGYGFIAPD---NGGADVFVHISAVERAGLSGLNDGQKVSFDEERDPKKGK 82 Query: 65 YSAENLKL 72 SA NLK+ Sbjct: 83 TSAVNLKV 90 >gi|315499666|ref|YP_004088469.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] gi|315417678|gb|ADU14318.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] Length = 67 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 36/69 (52%), Positives = 51/69 (73%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ E G DVF+H SAV SAGL +L++GQ V+Y+ VQ D G+ Sbjct: 4 GTVKWFNSIKGFGFIQPD---EGGIDVFVHASAVESAGLRSLSDGQKVSYE-VQLD-RGR 58 Query: 65 YSAENLKLV 73 SA NL+++ Sbjct: 59 SSASNLQII 67 >gi|163792428|ref|ZP_02186405.1| Cold-shock DNA-binding domain protein [alpha proteobacterium BAL199] gi|159182133|gb|EDP66642.1| Cold-shock DNA-binding domain protein [alpha proteobacterium BAL199] Length = 68 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE + DVF+H SAV AG+ +L EGQ V++D V+ NGK Sbjct: 4 GTVKWFNATKGYGFIEPE---DGSADVFVHISAVERAGIASLNEGQKVSFD-VERGRNGK 59 Query: 65 YSAENLK 71 Y+A +L+ Sbjct: 60 YAATDLR 66 >gi|323137446|ref|ZP_08072524.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] gi|322397433|gb|EFX99956.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] Length = 69 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 47/67 (70%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AG+ +L+EGQ ++YD + + +GK Sbjct: 4 GTVKWFNSQKGFGFIQPD---DGGKDVFVHISAVEQAGMRDLSEGQKLSYDIIDDRRSGK 60 Query: 65 YSAENLK 71 SA L+ Sbjct: 61 ASAGKLQ 67 >gi|148557537|ref|YP_001265119.1| cold-shock DNA-binding protein family protein [Sphingomonas wittichii RW1] gi|148502727|gb|ABQ70981.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1] Length = 68 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKGYGFI PE E GDD F+H SAV AG+ L + Q ++Y+ V+ D GK Sbjct: 4 GTVKFFNADKGYGFIAPE---EGGDDSFVHISAVERAGMATLNKDQRISYE-VETDRRGK 59 Query: 65 YSAENLKLV 73 SA NL+ V Sbjct: 60 SSAVNLQAV 68 >gi|302381609|ref|YP_003817432.1| cold-shock DNA-binding domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192237|gb|ADK99808.1| cold-shock DNA-binding domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 70 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KWYN KGYGFI P ++ G DVF+H SAV AG+ L EGQ V+Y+ ++ GK Sbjct: 4 GTVKWYNSTKGYGFIEP---SDGGKDVFVHVSAVEGAGMNGLNEGQKVSYEVEKDRRTGK 60 Query: 65 YSAENLK 71 SA LK Sbjct: 61 ESAGQLK 67 >gi|99081593|ref|YP_613747.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TM1040] gi|99037873|gb|ABF64485.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040] Length = 68 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE T+ DVFLH SAV AG+ + +GQ VT+D ++N +G+ Sbjct: 4 GTVKWFNATKGFGFIQPEDGTQ---DVFLHISAVERAGINRIDDGQKVTFD-LENGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 TSASNLAL 67 >gi|163853561|ref|YP_001641604.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218532421|ref|YP_002423237.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240140980|ref|YP_002965460.1| DNA-binding transcriptional repressor [Methylobacterium extorquens AM1] gi|254563491|ref|YP_003070586.1| DNA-binding transcriptional repressor [Methylobacterium extorquens DM4] gi|163665166|gb|ABY32533.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218524724|gb|ACK85309.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240010957|gb|ACS42183.1| DNA-binding transcriptional repressor [Methylobacterium extorquens AM1] gi|254270769|emb|CAX26774.1| DNA-binding transcriptional repressor [Methylobacterium extorquens DM4] Length = 69 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE ++ DVF+H SAV AGL LTEGQ V+Y+ + +GK Sbjct: 4 GTVKWFNEQKGFGFIQPEDGSK---DVFVHISAVERAGLRGLTEGQKVSYEMETDRRSGK 60 Query: 65 YSAENLKL 72 SA L++ Sbjct: 61 QSAGQLQV 68 >gi|154253600|ref|YP_001414424.1| cold-shock DNA-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154157550|gb|ABS64767.1| putative cold-shock DNA-binding domain protein [Parvibaculum lavamentivorans DS-1] Length = 69 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G + DVF+H SAV AG+ +L EGQ + YD + +GK Sbjct: 4 GTVKWFNSQKGFGFIQPDGGDK---DVFVHISAVERAGMSSLNEGQKIGYDLETDQRSGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 VSAANLR 67 >gi|254418731|ref|ZP_05032455.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp. BAL3] gi|196184908|gb|EDX79884.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp. BAL3] Length = 70 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP KGYGFI P+ + G DVF+H SAV AGL L E Q V+Y+ ++ +GK Sbjct: 4 GTVKWFNPTKGYGFIQPD---DGGKDVFVHISAVEGAGLRGLDENQKVSYELERDKRSGK 60 Query: 65 YSAENLKLV 73 SA L+ + Sbjct: 61 ESAGQLQTI 69 >gi|329114551|ref|ZP_08243310.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001] gi|326696031|gb|EGE47713.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001] Length = 82 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KGYGFI P+ + G DVF+H +AV +AGL L +GQ V++D V+ Sbjct: 15 LMPTGTVKWFNATKGYGFIAPD---DGGKDVFVHITAVQAAGLRGLNDGQKVSFDLVEE- 70 Query: 61 ANGKYSAENLKL 72 GK +A NLK+ Sbjct: 71 -RGKQAATNLKV 81 >gi|92117563|ref|YP_577292.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91800457|gb|ABE62832.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 67 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G DVF+H SAV AGL +L EG V+Y+ V N GK Sbjct: 4 GTVKWFNATKGFGFIQPD---SGGKDVFVHISAVERAGLSSLNEGAKVSYEEVAN--KGK 58 Query: 65 YSAENLKL 72 SAENL++ Sbjct: 59 TSAENLRV 66 >gi|240850168|ref|YP_002971561.1| cold shock protein [Bartonella grahamii as4aup] gi|240267291|gb|ACS50879.1| cold shock protein [Bartonella grahamii as4aup] Length = 69 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P ++ DVF+H SAV +GL +L EGQ ++YD +Q+ +GK Sbjct: 4 GTVKWFNTTKGFGFIQP---SDGSADVFVHISAVERSGLNSLNEGQKISYDVLQDRRSGK 60 Query: 65 YSAENL 70 ++A NL Sbjct: 61 FAAGNL 66 >gi|299892776|gb|ADJ57697.1| cold shock protein [Caulobacter crescentus NA1000] Length = 176 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ V Y+ Q+ +GK Sbjct: 111 GVVKWFNTTKGFGFIQPD---NGGGDVFVHISAVERAGLRGLNEGQQVGYELEQDRRSGK 167 Query: 65 YSAENLKLV 73 SA NL+++ Sbjct: 168 TSAGNLRIL 176 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP KG+GFI PE + G DVF+H +AV +GL L EG V Y+ ++ +GK Sbjct: 4 GVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRRSGK 60 Query: 65 YSAENLKL 72 SA L++ Sbjct: 61 TSAGQLRV 68 >gi|295688501|ref|YP_003592194.1| cold-shock DNA-binding domain-containing protein [Caulobacter segnis ATCC 21756] gi|295430404|gb|ADG09576.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC 21756] Length = 175 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ V Y+ Q+ +GK Sbjct: 110 GVVKWFNTTKGFGFIQPD---NGGGDVFVHISAVERAGLRGLNEGQQVGYELEQDRRSGK 166 Query: 65 YSAENLKLV 73 SA NL+++ Sbjct: 167 TSAGNLRIL 175 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP KG+GFI PE + G DVF+H +AV +GL L EG V Y+ ++ +GK Sbjct: 4 GVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRRSGK 60 Query: 65 YSAENLKLV 73 SA L++ Sbjct: 61 TSAGQLRVT 69 >gi|148559048|ref|YP_001259374.1| cold-shock family protein [Brucella ovis ATCC 25840] gi|148370305|gb|ABQ60284.1| cold-shock family protein [Brucella ovis ATCC 25840] Length = 105 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 3/63 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ Sbjct: 45 GTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGR 101 Query: 65 YSA 67 SA Sbjct: 102 SSA 104 >gi|86356213|ref|YP_468105.1| cold shock protein [Rhizobium etli CFN 42] gi|86280315|gb|ABC89378.1| cold shock protein [Rhizobium etli CFN 42] Length = 69 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ + DVF+H SAV AG+ +L +GQ ++YD V+++ Sbjct: 1 MNTGTVKWFNATKGFGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYDLVRDNK 57 Query: 62 NGKYSAENLK 71 +GK SA+ L+ Sbjct: 58 SGKMSADRLQ 67 >gi|241202847|ref|YP_002973943.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856737|gb|ACS54404.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 69 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ GDD F+H SAV AG+ L EGQ + +D +++ +GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---NGGDDAFVHISAVERAGMRELVEGQKIGFDLERDNKSGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 MSACNLQ 67 >gi|16126859|ref|NP_421423.1| cold-shock domain-contain protein [Caulobacter crescentus CB15] gi|221235641|ref|YP_002518078.1| cold shock protein [Caulobacter crescentus NA1000] gi|13424199|gb|AAK24591.1| cold-shock domain family protein [Caulobacter crescentus CB15] gi|220964814|gb|ACL96170.1| cold shock protein [Caulobacter crescentus NA1000] Length = 69 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP KG+GFI PE + G DVF+H +AV +GL L EG V Y+ ++ +GK Sbjct: 4 GVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRRSGK 60 Query: 65 YSAENLKLV 73 SA NL+++ Sbjct: 61 TSAGNLRIL 69 >gi|323139562|ref|ZP_08074607.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] gi|322395181|gb|EFX97737.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] Length = 69 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AG+ +L+EGQ ++YD + + +GK Sbjct: 4 GTVKWFNAQKGFGFIQPD---DGGKDVFVHISAVEQAGMRDLSEGQKLSYDVIDDRRSGK 60 Query: 65 YSAENL 70 SA L Sbjct: 61 ASAGKL 66 >gi|15965864|ref|NP_386217.1| cold shock transcription regulator protein [Sinorhizobium meliloti 1021] gi|150397206|ref|YP_001327673.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|307309620|ref|ZP_07589273.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307321759|ref|ZP_07601147.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|15075133|emb|CAC46690.1| Probable cold shock transcription regulator [Sinorhizobium meliloti 1021] gi|150028721|gb|ABR60838.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] gi|306892581|gb|EFN23379.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306899955|gb|EFN30577.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 69 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + DVF+H SAV AGL L +GQ V+++ Q+ +GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---DGAADVFVHISAVERAGLSTLKDGQKVSFELTQDRRSGK 60 Query: 65 YSAENLK 71 SA+NL+ Sbjct: 61 TSADNLR 67 >gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium HTCC2255] gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium HTCC2255] Length = 531 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 3/71 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ WYNP KG GFI P+ + GDDVF+H SA+ ++GL + EG ++TY+ + ++ GK Sbjct: 4 GTVIWYNPVKGLGFINPD---QGGDDVFVHMSALKASGLKVVKEGDMLTYELLLDEKTGK 60 Query: 65 YSAENLKLVPK 75 +A N+ ++ K Sbjct: 61 KAASNVTILKK 71 >gi|298290653|ref|YP_003692592.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296927164|gb|ADH87973.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 69 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + DVF+H SAV AGL L EGQ V+Y+ + GK Sbjct: 4 GTVKWFNSQKGYGFIQPDAGS---SDVFVHISAVERAGLSTLNEGQKVSYEVEADRRTGK 60 Query: 65 YSAENLKLV 73 SA NL+ + Sbjct: 61 SSAANLRAL 69 >gi|148259024|ref|YP_001233151.1| cold-shock DNA-binding domain-containing protein [Acidiphilium cryptum JF-5] gi|326402151|ref|YP_004282232.1| hypothetical protein ACMV_00030 [Acidiphilium multivorum AIU301] gi|146400705|gb|ABQ29232.1| putative cold-shock DNA-binding domain protein [Acidiphilium cryptum JF-5] gi|325049012|dbj|BAJ79350.1| hypothetical protein ACMV_00030 [Acidiphilium multivorum AIU301] Length = 67 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H +AV +AG+ L EGQ ++Y+ Q GK Sbjct: 4 GTVKWFNTTKGFGFIVPQ---DGGKDVFVHITAVQAAGMRGLNEGQKISYEVTQE--RGK 58 Query: 65 YSAENLKLV 73 +A NLK V Sbjct: 59 AAATNLKAV 67 >gi|146280255|ref|YP_001170411.1| hypothetical protein Rsph17025_4258 [Rhodobacter sphaeroides ATCC 17025] gi|145558496|gb|ABP73106.1| hypothetical protein Rsph17025_4258 [Rhodobacter sphaeroides ATCC 17025] Length = 68 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P G ++ DVF+H +A+ AG+ L +GQ VT+D ++ D NG+ Sbjct: 4 GTVKWFNATKGFGFIAPTGGSK---DVFVHVTALERAGIRQLNDGQTVTFD-LERDRNGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESATNLVL 67 >gi|220920871|ref|YP_002496172.1| cold-shock DNA-binding domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219945477|gb|ACL55869.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans ORS 2060] Length = 69 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV +GL L+EGQ V+Y+ + +GK Sbjct: 4 GTVKWFNGQKGFGFIQPD---DGGKDVFVHISAVERSGLHTLSEGQKVSYELETDRRSGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 QSAGNLR 67 >gi|13475232|ref|NP_106796.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|14025983|dbj|BAB52582.1| cold shock protein [Mesorhizobium loti MAFF303099] Length = 70 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G DVF+H SAV AGL LT+GQ + Y+ Q+ GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---NGGQDVFVHISAVERAGLSTLTDGQKINYEVEQDRRTGK 60 Query: 65 YSAENL 70 SA NL Sbjct: 61 SSAGNL 66 >gi|307943089|ref|ZP_07658434.1| putative cold shock protein [Roseibium sp. TrichSKD4] gi|307773885|gb|EFO33101.1| putative cold shock protein [Roseibium sp. TrichSKD4] Length = 69 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KGYGFI PE ++ DVF+H SAV AG+ L+EGQ V+++ VQ+ +GK Sbjct: 4 GTVKFFNTTKGYGFIQPEDGSQ---DVFVHISAVERAGMTTLSEGQKVSFEVVQDRRSGK 60 Query: 65 YSAENLKLV 73 +A+ L V Sbjct: 61 SAADGLAAV 69 >gi|20803889|emb|CAD31467.1| PROBABLE TRANSCRIPTION REGULATOR COLD SHOCK PROTEIN [Mesorhizobium loti R7A] Length = 70 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL NL +GQ + Y+ Q+ +GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---DDGQDVFVHISAVERAGLSNLVDGQKIKYEIEQDRRSGK 60 Query: 65 YSAENLKLV 73 SA +L V Sbjct: 61 SSAGSLSKV 69 >gi|258542856|ref|YP_003188289.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-01] gi|256633934|dbj|BAH99909.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-01] gi|256636993|dbj|BAI02962.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-03] gi|256640046|dbj|BAI06008.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-07] gi|256643102|dbj|BAI09057.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-22] gi|256646157|dbj|BAI12105.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-26] gi|256649210|dbj|BAI15151.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-32] gi|256652197|dbj|BAI18131.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655254|dbj|BAI21181.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-12] Length = 67 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H +AV +AGL L +GQ V++D V+ GK Sbjct: 4 GTVKWFNATKGYGFIAPD---DGGKDVFVHITAVQAAGLRGLNDGQKVSFDLVEE--RGK 58 Query: 65 YSAENLKL 72 +A NLK+ Sbjct: 59 QAATNLKV 66 >gi|294678414|ref|YP_003579029.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003] gi|294477234|gb|ADE86622.1| cold shock protein CspA-3 [Rhodobacter capsulatus SB 1003] Length = 68 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE T+ DVF+H +A+ AGL L +GQ V++D ++ D NG+ Sbjct: 4 GTVKWFNAIKGFGFIAPESGTK---DVFVHVTALERAGLRGLNDGQAVSFD-LERDRNGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESATNLVL 67 >gi|163850615|ref|YP_001638658.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218529339|ref|YP_002420155.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240137664|ref|YP_002962135.1| cold shock DNA binding protein CspA [Methylobacterium extorquens AM1] gi|254560234|ref|YP_003067329.1| cold shock DNA binding protein CspA [Methylobacterium extorquens DM4] gi|163662220|gb|ABY29587.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218521642|gb|ACK82227.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240007632|gb|ACS38858.1| cold shock DNA binding protein CspA [Methylobacterium extorquens AM1] gi|254267512|emb|CAX23354.1| cold shock DNA binding protein CspA [Methylobacterium extorquens DM4] Length = 69 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ G DVF+H SAV AGL +L EGQ VTY+ + +GK Sbjct: 4 GTVKWFNETKGYGFIQPD---NGGKDVFVHISAVERAGLRDLAEGQKVTYEVEIDRKSGK 60 Query: 65 YSAENLKL 72 SA L++ Sbjct: 61 ESAGQLQV 68 >gi|170741171|ref|YP_001769826.1| cold-shock DNA-binding domain-containing protein [Methylobacterium sp. 4-46] gi|168195445|gb|ACA17392.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46] Length = 73 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G++KW+N KG+GFI P+ + G DVF+H SAV +GL L+EGQ V+Y+ + Sbjct: 4 MMSTGTVKWFNGQKGFGFIQPD---DGGKDVFVHISAVERSGLQTLSEGQKVSYELETDR 60 Query: 61 ANGKYSAENLK 71 +GK SA +L+ Sbjct: 61 RSGKQSAGSLR 71 >gi|319898519|ref|YP_004158612.1| cold shock protein [Bartonella clarridgeiae 73] gi|319402483|emb|CBI76026.1| cold shock protein [Bartonella clarridgeiae 73] Length = 69 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI P +GS DVF+H SAV +GL +L EGQ ++YD +Q+ +G Sbjct: 4 GTVKWFNTTKGFGFIQPNDGSA----DVFVHISAVERSGLNDLNEGQKISYDVLQDRRSG 59 Query: 64 KYSAENL 70 K++A NL Sbjct: 60 KFAAGNL 66 >gi|296444335|ref|ZP_06886300.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] gi|296257982|gb|EFH05044.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] Length = 70 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ ++Y+ V + Sbjct: 1 MQTGVVKWFNSQKGFGFIQPD---SGGADVFVHISAVERAGLRGLAEGQKISYETVIDKR 57 Query: 62 NGKYSAENLKL 72 +GK SA+ L++ Sbjct: 58 SGKSSADQLQV 68 >gi|300021896|ref|YP_003754507.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523717|gb|ADJ22186.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 68 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 46/67 (68%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE E G+DVF+H SAV AGL +L EGQ + ++ + NGK Sbjct: 4 GTVKWFNGQKGYGFIQPE---EGGNDVFVHISAVERAGLQSLREGQKIYFE-TERGRNGK 59 Query: 65 YSAENLK 71 +A NL+ Sbjct: 60 IAAVNLR 66 >gi|218677799|ref|ZP_03525696.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894] Length = 69 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 48/67 (71%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + DVF+H SAV AG+ +L +GQ ++Y+ V+++ +GK Sbjct: 4 GTVKWFNATKGYGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYELVRDNKSGK 60 Query: 65 YSAENLK 71 SA+ L+ Sbjct: 61 MSADRLQ 67 >gi|259416628|ref|ZP_05740548.1| conserved domain protein [Silicibacter sp. TrichCH4B] gi|259348067|gb|EEW59844.1| conserved domain protein [Silicibacter sp. TrichCH4B] Length = 68 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE T+ DVFLH SAV AG+ + +GQ VTYD +++ +G+ Sbjct: 4 GTVKWFNSTKGFGFIQPEDGTQ---DVFLHVSAVERAGINRIDDGQKVTYD-LESGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 TSASNLAL 67 >gi|254294491|ref|YP_003060514.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] gi|254043022|gb|ACT59817.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] Length = 69 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H +AV AGL L EGQ V ++ V + GK Sbjct: 4 GTVKWFNATKGYGFIAPD---DGGADVFVHVTAVQQAGLAGLDEGQKVEFELVTDPKRGK 60 Query: 65 YSAENLK 71 SA +LK Sbjct: 61 TSAGDLK 67 >gi|254488402|ref|ZP_05101607.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp. GAI101] gi|214045271|gb|EEB85909.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp. GAI101] Length = 68 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 49/68 (72%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GF+ PEG ++ DVF+H SAV AGL L++ Q +T+D +++ +G+ Sbjct: 4 GTVKWFNSTKGFGFVAPEGGSK---DVFVHISAVEQAGLTGLSDDQKITFD-IESGRDGR 59 Query: 65 YSAENLKL 72 SA N+KL Sbjct: 60 ESATNIKL 67 >gi|254418771|ref|ZP_05032495.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp. BAL3] gi|196184948|gb|EDX79924.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp. BAL3] Length = 70 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KWYNP KGYGFI P+ + G DVF+H SAV ++ + +L EGQ ++Y+ ++ +GK Sbjct: 4 GTVKWYNPTKGYGFIAPD---DGGKDVFVHASAVETSSVGSLNEGQKISYEIERDSRSGK 60 Query: 65 YSAENL 70 SA L Sbjct: 61 ESAGRL 66 >gi|13476765|ref|NP_108334.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|319784316|ref|YP_004143792.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14027526|dbj|BAB53795.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|317170204|gb|ADV13742.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 69 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + DVF+H SAV AG+ ++ EGQ + Y+ V+++ +GK Sbjct: 4 GTVKWFNATKGFGFIQPDDGSA---DVFVHISAVERAGMRDIVEGQKLGYEMVRDNKSGK 60 Query: 65 YSAENLK 71 SA+ LK Sbjct: 61 MSADQLK 67 >gi|92115994|ref|YP_575723.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91798888|gb|ABE61263.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 73 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+N KG+GFI P+ G DVF+H SAV AGL +L EG V+Y+ V N Sbjct: 7 VATGTVKWFNATKGFGFIQPD---SGGKDVFVHISAVERAGLSSLNEGAKVSYEVVAN-- 61 Query: 62 NGKYSAENLKL 72 GK SAE+L++ Sbjct: 62 RGKESAEDLRV 72 >gi|83312382|ref|YP_422646.1| cold shock protein [Magnetospirillum magneticum AMB-1] gi|82947223|dbj|BAE52087.1| Cold shock protein [Magnetospirillum magneticum AMB-1] Length = 69 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KGYGFI P+ G DVF+H SAV AGL L +GQ V+++ ++ GK Sbjct: 4 GSVKWFNSTKGYGFIAPD---NGGPDVFVHISAVERAGLSGLNDGQKVSFEEERDPRKGK 60 Query: 65 YSAENLKLV 73 SA NLK++ Sbjct: 61 TSAVNLKVL 69 >gi|119384797|ref|YP_915853.1| cold-shock DNA-binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119374564|gb|ABL70157.1| cold-shock DNA-binding protein family [Paracoccus denitrificans PD1222] Length = 68 Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE ++ D+F+H SAV AG+ L +GQ V++D ++ D NG+ Sbjct: 4 GTVKWFNSAKGFGFIQPESGSK---DIFVHISAVERAGIHQLNDGQAVSFD-LERDRNGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 DSATNLVL 67 >gi|153011838|ref|YP_001373051.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151563726|gb|ABS17222.1| putative cold-shock DNA-binding domain protein [Ochrobactrum anthropi ATCC 49188] Length = 68 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKG+GFITPE G DVF+H S +A AG+ +L EGQ V+Y+ Q+ GK Sbjct: 4 GTVKFFNQDKGFGFITPE---SGGSDVFVHVSGLAQAGV-SLGEGQKVSYEIGQDRKTGK 59 Query: 65 YSAENLKLV 73 AEN++ + Sbjct: 60 AKAENVRPI 68 >gi|149915747|ref|ZP_01904272.1| cold shock protein CspA [Roseobacter sp. AzwK-3b] gi|149810329|gb|EDM70174.1| cold shock protein CspA [Roseobacter sp. AzwK-3b] Length = 68 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PEG G DVF+H SAV AGL L + Q VT+D ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPEG---GGKDVFVHISAVERAGLTGLADNQKVTFD-IEAGRDGR 59 Query: 65 YSAENLKL 72 SA N+ L Sbjct: 60 ESAANIAL 67 >gi|85715217|ref|ZP_01046200.1| cold shock protein [Nitrobacter sp. Nb-311A] gi|85697863|gb|EAQ35737.1| cold shock protein [Nitrobacter sp. Nb-311A] Length = 62 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 5/66 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KGYGFI PE G DVF+H SAV AGL +L EG V+Y+ V N +GK S Sbjct: 1 MKWFNGQKGYGFIEPE---SGGKDVFVHISAVERAGLGSLNEGDKVSYEVVTN--HGKES 55 Query: 67 AENLKL 72 AENL++ Sbjct: 56 AENLRV 61 >gi|162147832|ref|YP_001602293.1| cold-shock DNA-binding domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209542453|ref|YP_002274682.1| cold-shock DNA-binding domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786409|emb|CAP55991.1| putative cold-shock DNA-binding domain protein [Gluconacetobacter diazotrophicus PAl 5] gi|209530130|gb|ACI50067.1| cold-shock DNA-binding domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 67 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE + G DVF+H +AV +AGL L E Q V+YD V GK Sbjct: 4 GTVKWFNATKGFGFIMPE---DGGKDVFVHITAVQAAGLRGLNENQRVSYDVVTE--RGK 58 Query: 65 YSAENLK 71 +A NLK Sbjct: 59 AAASNLK 65 >gi|167648239|ref|YP_001685902.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp. K31] gi|167350669|gb|ABZ73404.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31] Length = 68 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ +TY+ +++ +GK Sbjct: 4 GTVKWFNGTKGFGFIQPD---DGGADVFVHISAVERAGLRGLDEGQKITYELERDNRSGK 60 Query: 65 YSAENLK 71 SA L+ Sbjct: 61 MSAGQLQ 67 >gi|298292879|ref|YP_003694818.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296929390|gb|ADH90199.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 70 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G D F+H SAV AG+ +L EGQ V ++ V + +GK Sbjct: 4 GTVKWFNSQKGFGFIAPD---DGGSDAFVHISAVERAGMSDLREGQKVDFELVADQRSGK 60 Query: 65 YSAENLK 71 SA+ L+ Sbjct: 61 MSADKLQ 67 >gi|260574813|ref|ZP_05842815.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] gi|259022818|gb|EEW26112.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] Length = 68 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI PEG + DVF+H +A+ AG+ +L +GQ VT+D ++ Sbjct: 1 MAKGTVKWFNATKGFGFIAPEGGKK---DVFVHITALERAGIRSLADGQAVTFD-IEAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESATNLAL 67 >gi|114328925|ref|YP_746082.1| cold shock protein [Granulibacter bethesdensis CGDNIH1] gi|114317099|gb|ABI63159.1| cold shock protein [Granulibacter bethesdensis CGDNIH1] Length = 100 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+H G++KW+NP KGYGFI P + DVF+H SAV AGL +L EGQ + ++ ++ Sbjct: 32 MLH-GTVKWFNPTKGYGFIAP---STGEKDVFVHISAVQRAGLRSLNEGQQLDFE-IEQQ 86 Query: 61 ANGKYSAENL 70 NG+ +A NL Sbjct: 87 QNGRAAAVNL 96 >gi|126731182|ref|ZP_01746990.1| cold shock family protein [Sagittula stellata E-37] gi|126708484|gb|EBA07542.1| cold shock family protein [Sagittula stellata E-37] Length = 68 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 4/70 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V+Y+ +Q +G Sbjct: 3 KGTVKWFNTTKGYGFIQPD---EGGKDVFVHISAVERSGLTGLADNQKVSYE-LQTGRDG 58 Query: 64 KYSAENLKLV 73 K SA NL+L+ Sbjct: 59 KQSAGNLELL 68 >gi|298291124|ref|YP_003693063.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296927635|gb|ADH88444.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 71 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+G+ G DVF+H SAV +GL L +G+ V+++ + +GK Sbjct: 6 GTVKWFNDQKGYGFIQPDGA---GKDVFVHISAVQRSGLQGLRDGEKVSFELQTDQRSGK 62 Query: 65 YSAENLKL 72 SA NL++ Sbjct: 63 TSAVNLRV 70 >gi|85703785|ref|ZP_01034889.1| Cold-shock protein [Roseovarius sp. 217] gi|85672713|gb|EAQ27570.1| Cold-shock protein [Roseovarius sp. 217] Length = 114 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+G G DVF+H SAV AGL L + Q VT+D +++ +G+ Sbjct: 50 GTVKWFNATKGYGFIAPDG---GGKDVFVHISAVERAGLTGLADDQKVTFD-IESGRDGR 105 Query: 65 YSAENLKL 72 SA N+ L Sbjct: 106 ESASNISL 113 >gi|182679940|ref|YP_001834086.1| cold-shock DNA-binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635823|gb|ACB96597.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 69 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ ++ DVF+H SAV + L L EGQ+V+Y+ ++ +GK Sbjct: 4 GTVKWFNTTKGYGFIAPQDGSK---DVFVHISAVERSQLRELVEGQVVSYELQRDQRSGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 ESAVNLR 67 >gi|310815277|ref|YP_003963241.1| cold shock family protein [Ketogulonicigenium vulgare Y25] gi|308754012|gb|ADO41941.1| cold shock family protein [Ketogulonicigenium vulgare Y25] Length = 68 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PEG G DVF+H SAV AGL L++ Q VT+D ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPEG---GGKDVFVHISAVEQAGLTGLSDDQKVTFDLIEG-RDGR 59 Query: 65 YSAENLK 71 A NLK Sbjct: 60 QMAGNLK 66 >gi|163851320|ref|YP_001639363.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|163662925|gb|ABY30292.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] Length = 69 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE ++ DVF+H SAV AG+ NL EGQ V+Y+ + +GK Sbjct: 4 GTVKWFNDTKGFGFIQPEDGSK---DVFVHISAVERAGMRNLIEGQKVSYEMETDRRSGK 60 Query: 65 YSAENLK 71 SA +L+ Sbjct: 61 QSAGSLQ 67 >gi|241896392|ref|ZP_04783688.1| CspA family cold shock transcriptional regulator [Weissella paramesenteroides ATCC 33313] gi|241870372|gb|EER74123.1| CspA family cold shock transcriptional regulator [Weissella paramesenteroides ATCC 33313] Length = 75 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKGYGFI S ESGDDVF+H SA+ + G +L EGQ V+++ Q D Sbjct: 10 MEQGTVKWFNADKGYGFI----SRESGDDVFVHFSAIQTDGFKSLEEGQAVSFEVQQGD 64 >gi|114328842|ref|YP_745999.1| cold shock protein [Granulibacter bethesdensis CGDNIH1] gi|114317016|gb|ABI63076.1| cold shock protein [Granulibacter bethesdensis CGDNIH1] Length = 67 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H +AV +AGL L EGQ VTY+ GK Sbjct: 4 GTVKWFNATKGFGFIMPQ---DGGKDVFVHITAVQAAGLRGLDEGQKVTYEVAME--RGK 58 Query: 65 YSAENLKL 72 +A NL++ Sbjct: 59 AAATNLRV 66 >gi|170751403|ref|YP_001757663.1| cold-shock DNA-binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170657925|gb|ACB26980.1| cold-shock DNA-binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 69 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H SAV AGL L EGQ V+Y+ + +GK Sbjct: 4 GTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGLRGLNEGQKVSYELETDRRSGK 60 Query: 65 YSAENLK 71 SA L+ Sbjct: 61 QSAGQLQ 67 >gi|116250366|ref|YP_766204.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|209547826|ref|YP_002279743.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|218658368|ref|ZP_03514298.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771] gi|241203000|ref|YP_002974096.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115255014|emb|CAK06088.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|209533582|gb|ACI53517.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240856890|gb|ACS54557.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 69 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 48/67 (71%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + DVF+H SAV AG+ +L +GQ ++Y+ V+++ +GK Sbjct: 4 GTVKWFNATKGFGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYELVRDNKSGK 60 Query: 65 YSAENLK 71 SA+ L+ Sbjct: 61 MSADRLQ 67 >gi|46201253|ref|ZP_00055476.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] gi|83310692|ref|YP_420956.1| cold shock protein [Magnetospirillum magneticum AMB-1] gi|82945533|dbj|BAE50397.1| Cold shock protein [Magnetospirillum magneticum AMB-1] Length = 69 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE + D+F+H SAV AG+ NL EGQ ++++ ++ GK Sbjct: 4 GTVKWFNATKGYGFIQPE---DGSADIFVHISAVERAGIGNLKEGQKLSFETERDPRKGK 60 Query: 65 YSAENLKLV 73 SA NLK + Sbjct: 61 SSAVNLKAL 69 >gi|303233128|ref|ZP_07319801.1| cold shock protein CspA [Atopobium vaginae PB189-T1-4] gi|302480713|gb|EFL43800.1| cold shock protein CspA [Atopobium vaginae PB189-T1-4] Length = 67 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+NPDKGYGFI S E GDD+F+H S + G L EGQ V +D V NG Sbjct: 3 QGTVKWFNPDKGYGFI----SREDGDDLFVHFSEIQMDGFKTLEEGQAVEFD-VTTGQNG 57 Query: 64 KYSAENLK 71 K A N++ Sbjct: 58 KLQASNVR 65 >gi|332560384|ref|ZP_08414706.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N] gi|332278096|gb|EGJ23411.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N] Length = 68 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P G ++ DVF+H +A+ AG+ L +GQ V++D ++ D NG+ Sbjct: 4 GTVKWFNATKGFGFIAPAGGSK---DVFIHVTALERAGIRQLDDGQAVSFD-LERDRNGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESATNLVL 67 >gi|114326681|ref|YP_743838.1| cold shock protein [Granulibacter bethesdensis CGDNIH1] gi|114314855|gb|ABI60915.1| cold shock protein [Granulibacter bethesdensis CGDNIH1] Length = 83 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 4/73 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KGYGFI P+G G DVF+H SAV AGL L +GQ +++D ++ Sbjct: 15 LMPTGTVKWFNATKGYGFIHPDG---GGADVFVHISAVEKAGLSKLDDGQKLSFD-LEAG 70 Query: 61 ANGKYSAENLKLV 73 GK SA NLKL Sbjct: 71 RQGKTSAVNLKLA 83 >gi|23012538|ref|ZP_00052598.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 69 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFI P+ G DVF+H SAV AGL L +GQ V+++ ++ GK Sbjct: 4 GSVKWFNSTKGFGFIAPD---NGGPDVFVHISAVERAGLSGLNDGQKVSFEEERDPRKGK 60 Query: 65 YSAENLKLV 73 SA NLK++ Sbjct: 61 TSAVNLKVL 69 >gi|254502104|ref|ZP_05114255.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] gi|222438175|gb|EEE44854.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] Length = 69 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KGYGFI PE + +DVF+H SAV AGL L EG V+++ VQ+ +GK Sbjct: 4 GTVKFFNSTKGYGFIQPE---DGSNDVFVHISAVERAGLATLNEGDKVSFEVVQDRRSGK 60 Query: 65 YSAENL 70 +A+NL Sbjct: 61 SAADNL 66 >gi|158423022|ref|YP_001524314.1| cold shock protein [Azorhizobium caulinodans ORS 571] gi|158329911|dbj|BAF87396.1| cold shock protein [Azorhizobium caulinodans ORS 571] Length = 69 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G DVF+H SAV AG+ L EGQ + ++ ++++ +GK Sbjct: 4 GTVKWFNATKGFGFIQPD---NGGSDVFVHISAVERAGMQGLAEGQKLQFEIIRDNKSGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 NSAGNLQ 67 >gi|110635634|ref|YP_675842.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp. BNC1] gi|110286618|gb|ABG64677.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1] Length = 69 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 48/67 (71%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI P+ + DVF+H SAV AG+ + EGQ +++D V+++ +GK Sbjct: 4 GTVKFFNATKGFGFIQPD---DGAADVFVHISAVERAGMRTIVEGQKLSFDVVRDNRSGK 60 Query: 65 YSAENLK 71 +AENL+ Sbjct: 61 SAAENLQ 67 >gi|221369644|ref|YP_002520740.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131] gi|221162696|gb|ACM03667.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131] Length = 77 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P G ++ DVF+H +A+ AG+ L +GQ V++D ++ D NG+ Sbjct: 13 GTVKWFNATKGFGFIAPAGGSK---DVFVHVTALERAGIRQLDDGQAVSFD-LERDRNGR 68 Query: 65 YSAENLKL 72 SA NL L Sbjct: 69 ESATNLVL 76 >gi|190890260|ref|YP_001976802.1| cold shock protein [Rhizobium etli CIAT 652] gi|218509122|ref|ZP_03507000.1| cold shock protein [Rhizobium etli Brasil 5] gi|218513064|ref|ZP_03509904.1| cold shock protein [Rhizobium etli 8C-3] gi|218672806|ref|ZP_03522475.1| cold shock protein [Rhizobium etli GR56] gi|190695539|gb|ACE89624.1| cold shock protein [Rhizobium etli CIAT 652] gi|327190777|gb|EGE57846.1| cold shock protein [Rhizobium etli CNPAF512] Length = 69 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ + DVF+H SAV AG+ +L +GQ ++Y+ V+++ Sbjct: 1 MNTGTVKWFNATKGFGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYELVRDNK 57 Query: 62 NGKYSAENLK 71 +GK SA+ L+ Sbjct: 58 SGKMSADRLQ 67 >gi|188583863|ref|YP_001927308.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] gi|179347361|gb|ACB82773.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] Length = 69 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE ++ DVF+H SAV AGL L EGQ V+Y+ + +GK Sbjct: 4 GTVKWFNEQKGFGFIQPEDGSK---DVFVHISAVERAGLRGLAEGQKVSYELETDRRSGK 60 Query: 65 YSAENLKL 72 SA L++ Sbjct: 61 QSAGQLQV 68 >gi|77465631|ref|YP_355134.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1] gi|77390049|gb|ABA81233.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1] Length = 77 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P G ++ DVF+H +A+ AG+ L +GQ V++D ++ D NG+ Sbjct: 13 GTVKWFNATKGFGFIAPTGGSK---DVFVHVTALERAGIRQLDDGQAVSFD-LERDRNGR 68 Query: 65 YSAENLKL 72 SA NL L Sbjct: 69 ESATNLVL 76 >gi|89071112|ref|ZP_01158315.1| cold shock family protein [Oceanicola granulosus HTCC2516] gi|89043360|gb|EAR49581.1| cold shock family protein [Oceanicola granulosus HTCC2516] Length = 68 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI PE G DVF+H SAV AGL L + Q VTYD V+ +G Sbjct: 3 KGTVKWFNSTKGFGFIAPE---TGGKDVFVHISAVERAGLTGLADDQKVTYD-VEAGRDG 58 Query: 64 KYSAENLKL 72 + SA N++L Sbjct: 59 RESAVNIQL 67 >gi|77462500|ref|YP_352004.1| cold-shock DNA-binding protein family protein [Rhodobacter sphaeroides 2.4.1] gi|77386918|gb|ABA78103.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides 2.4.1] Length = 77 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P G ++ DVF+H +A+ AG+ L +GQ V++D ++ D NG+ Sbjct: 13 GTVKWFNATKGFGFIAPAGGSK---DVFVHVTALERAGIRQLDDGQAVSFD-LERDRNGR 68 Query: 65 YSAENLKL 72 SA NL L Sbjct: 69 ESATNLVL 76 >gi|146280285|ref|YP_001170441.1| hypothetical protein Rsph17025_4290 [Rhodobacter sphaeroides ATCC 17025] gi|145558526|gb|ABP73136.1| hypothetical protein Rsph17025_4290 [Rhodobacter sphaeroides ATCC 17025] Length = 68 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P ++ DVF+H +A+ AG+ L +GQ VTYD ++ D NG+ Sbjct: 4 GTVKWFNATKGFGFIAPAHGSK---DVFVHVTALERAGIHQLNDGQAVTYD-METDRNGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESATNLVL 67 >gi|222147128|ref|YP_002548085.1| cold shock protein [Agrobacterium vitis S4] gi|221734118|gb|ACM35081.1| cold shock protein [Agrobacterium vitis S4] Length = 74 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ + YD +++ +GK Sbjct: 9 GTVKWFNSTKGFGFIQPD---NGGPDAFVHISAVERAGMREIVEGQKIAYDMERDNKSGK 65 Query: 65 YSAENLK 71 SA NL+ Sbjct: 66 MSACNLQ 72 >gi|163851319|ref|YP_001639362.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|163662924|gb|ABY30291.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] Length = 69 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H SAV AGL L EGQ V+Y+ + +GK Sbjct: 4 GTVKWFNGTKGYGFIQPD---DGGKDVFVHISAVERAGLRELAEGQKVSYEVEIDRRSGK 60 Query: 65 YSAENLKL 72 SA L++ Sbjct: 61 ESAGQLQV 68 >gi|222086901|ref|YP_002545435.1| cold shock protein [Agrobacterium radiobacter K84] gi|221724349|gb|ACM27505.1| cold shock protein [Agrobacterium radiobacter K84] Length = 69 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 47/67 (70%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + DVF+H SAV AG+ +L +GQ ++Y+ V++ +GK Sbjct: 4 GTVKWFNAAKGFGFIQPD---DGATDVFVHISAVERAGMSSLRDGQKISYELVKDKRSGK 60 Query: 65 YSAENLK 71 SA+ L+ Sbjct: 61 MSADQLE 67 >gi|126461377|ref|YP_001042491.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126103041|gb|ABN75719.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17029] Length = 68 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P G ++ DVF+H +A+ AG+ L +GQ V++D ++ D NG+ Sbjct: 4 GTVKWFNATKGFGFIAPAGGSK---DVFVHVTALERAGIRQLDDGQAVSFD-LERDRNGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESATNLVL 67 >gi|312115790|ref|YP_004013386.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311220919|gb|ADP72287.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 69 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 48/67 (71%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N +KGYGFI P+ + DVF+H SAV AG+ + EGQ ++++ V++ +GK Sbjct: 4 GTVKFFNVNKGYGFIQPDSGSA---DVFVHISAVERAGMRTIVEGQKLSFEIVRDARSGK 60 Query: 65 YSAENLK 71 SAENL+ Sbjct: 61 SSAENLQ 67 >gi|110678559|ref|YP_681566.1| cold shock protein CspA [Roseobacter denitrificans OCh 114] gi|109454675|gb|ABG30880.1| cold shock protein CspA [Roseobacter denitrificans OCh 114] Length = 68 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G ++ DVF+H SAV AGL L + Q VT+D +++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERAGLTGLADNQKVTFD-IEDGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 QSATNLAL 67 >gi|110634259|ref|YP_674467.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp. BNC1] gi|110285243|gb|ABG63302.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1] Length = 69 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ DVF+H SAV AG+ +L EGQ + ++ V++ +GK Sbjct: 4 GTVKWFNATKGFGFIQPDSGQP---DVFVHISAVEQAGMRSLVEGQKIDFEVVRDPKSGK 60 Query: 65 YSAENLKLV 73 +A NL+ V Sbjct: 61 SAAANLQAV 69 >gi|77464163|ref|YP_353667.1| cold-shock DNA-binding protein family protein [Rhodobacter sphaeroides 2.4.1] gi|126463006|ref|YP_001044120.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|146276547|ref|YP_001166706.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|221640032|ref|YP_002526294.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] gi|332559039|ref|ZP_08413361.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides WS8N] gi|77388581|gb|ABA79766.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides 2.4.1] gi|126104670|gb|ABN77348.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17029] gi|145554788|gb|ABP69401.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17025] gi|221160813|gb|ACM01793.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] gi|332276751|gb|EGJ22066.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides WS8N] Length = 68 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI PEG + DVF+H +A+ AG+ L +GQ VT+D +++ +G Sbjct: 3 KGTVKWFNATKGYGFIAPEGGKK---DVFVHITALERAGIRALNDGQAVTFD-IESGRDG 58 Query: 64 KYSAENLKL 72 + SA N+ + Sbjct: 59 RESATNISI 67 >gi|302335495|ref|YP_003800702.1| cold-shock DNA-binding protein family [Olsenella uli DSM 7084] gi|301319335|gb|ADK67822.1| cold-shock DNA-binding protein family [Olsenella uli DSM 7084] Length = 67 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+NPDKGYGFI S E GDD+F+H S + G L EGQ V +D + NG Sbjct: 3 QGTVKWFNPDKGYGFI----SREDGDDLFVHYSEIQMDGFKTLDEGQAVEFD-ITTGQNG 57 Query: 64 KYSAENLK 71 K A N++ Sbjct: 58 KLQASNVR 65 >gi|308234392|ref|ZP_07665129.1| cold-shock DNA-binding protein family [Atopobium vaginae DSM 15829] gi|328944208|ref|ZP_08241672.1| cold shock protein B [Atopobium vaginae DSM 15829] gi|327491127|gb|EGF22902.1| cold shock protein B [Atopobium vaginae DSM 15829] Length = 67 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+NPDKGYGFI S E GDD+F+H S + G L EGQ V +D + NG Sbjct: 3 QGTVKWFNPDKGYGFI----SREDGDDLFVHFSEIKMDGFKTLDEGQAVEFD-ITTGQNG 57 Query: 64 KYSAENLK 71 K A N++ Sbjct: 58 KLQASNVR 65 >gi|83944376|ref|ZP_00956831.1| cold shock family protein [Sulfitobacter sp. EE-36] gi|83953418|ref|ZP_00962140.1| cold shock family protein [Sulfitobacter sp. NAS-14.1] gi|83842386|gb|EAP81554.1| cold shock family protein [Sulfitobacter sp. NAS-14.1] gi|83844920|gb|EAP82802.1| cold shock family protein [Sulfitobacter sp. EE-36] Length = 68 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+G G D+F+H SAV AGL L + Q VT+D V+ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPDG---GGKDIFVHISAVERAGLTGLADNQKVTFD-VEAGRDGR 59 Query: 65 YSAENLKL 72 SA N+ L Sbjct: 60 ESAANIAL 67 >gi|259502488|ref|ZP_05745390.1| cold-shock domain family protein [Lactobacillus antri DSM 16041] gi|259169631|gb|EEW54126.1| cold-shock domain family protein [Lactobacillus antri DSM 16041] Length = 66 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/59 (52%), Positives = 41/59 (69%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKGYGFI S ESGDDVF+H SA+ G +L EGQ VT+D + D Sbjct: 1 MEQGTVKWFNNDKGYGFI----SRESGDDVFVHFSAIQGEGFKSLDEGQKVTFDVEEGD 55 >gi|259418670|ref|ZP_05742587.1| conserved domain protein [Silicibacter sp. TrichCH4B] gi|259344892|gb|EEW56746.1| conserved domain protein [Silicibacter sp. TrichCH4B] Length = 68 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI EG + +DVF+H SAV +GL L +GQ VT++ +Q+ +G+ Sbjct: 4 GTVKWFNSTKGYGFIAVEGRS---NDVFVHISAVERSGLTGLADGQAVTFE-IQSGRDGR 59 Query: 65 YSAENLKL 72 SA +L+L Sbjct: 60 ESASDLQL 67 >gi|116250220|ref|YP_766058.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254868|emb|CAK05942.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] Length = 69 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H SAV AG+ +L EGQ + +D +++ +GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRDLVEGQKIGFDLERDNKSGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 MSACNLQ 67 >gi|330992259|ref|ZP_08316207.1| putative cold shock protein y4cH [Gluconacetobacter sp. SXCC-1] gi|329760458|gb|EGG76954.1| putative cold shock protein y4cH [Gluconacetobacter sp. SXCC-1] Length = 68 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + D F+H SAV AG L EGQ VTYD ++ NGK Sbjct: 4 GTVKWFNAQKGFGFIQPD---DGSADAFVHISAVEQAGQQTLNEGQAVTYD-LERGRNGK 59 Query: 65 YSAENLKL 72 SA NLK+ Sbjct: 60 SSAVNLKI 67 >gi|332715811|ref|YP_004443277.1| cold shock protein cspA [Agrobacterium sp. H13-3] gi|325062496|gb|ADY66186.1| cold shock protein cspA [Agrobacterium sp. H13-3] Length = 74 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D +++ +GK Sbjct: 9 GTVKWFNSTKGFGFIQPD---NGGTDAFVHISAVERAGMRELVEGQKIGFDLERDNKSGK 65 Query: 65 YSAENLK 71 SA NL+ Sbjct: 66 MSACNLQ 72 >gi|188583612|ref|YP_001927057.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] gi|179347110|gb|ACB82522.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] Length = 69 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW++ KGYGFI P+ G DVF+H SAV AGL L EGQ VT+D + Sbjct: 1 MNTGTVKWFDEIKGYGFIQPD---TGGKDVFVHISAVQQAGLRGLVEGQKVTFDVENDRR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKPAAVNLQ 67 >gi|46206172|ref|ZP_00047626.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 69 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE ++ DVF+H SAV AGL LTEGQ V+Y + +GK Sbjct: 4 GTVKWFNEQKGYGFIQPEDGSK---DVFVHISAVERAGLRGLTEGQKVSYVMETDRRSGK 60 Query: 65 YSAENLKL 72 S L++ Sbjct: 61 QSGGKLQV 68 >gi|150398072|ref|YP_001328539.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150029587|gb|ABR61704.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] Length = 68 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKG+GFITPE G DVF+H SA+ G +L+EGQ V+Y+ Q+ GK Sbjct: 4 GTVKFFNGDKGFGFITPE---NGGTDVFVHVSALQEGG--SLSEGQRVSYEIGQDRKTGK 58 Query: 65 YSAENLKLV 73 AEN++++ Sbjct: 59 SRAENVRVL 67 >gi|23009266|ref|ZP_00050379.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 69 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW++ KGYGFI P+ G DVF+H SAV AGL L EGQ VT+D + Sbjct: 1 MNTGTVKWFDEIKGYGFIQPD---NGGKDVFVHISAVQQAGLRGLAEGQKVTFDIENDRR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKPAAVNLQ 67 >gi|85703999|ref|ZP_01035102.1| cold shock family protein [Roseovarius sp. 217] gi|85671319|gb|EAQ26177.1| cold shock family protein [Roseovarius sp. 217] Length = 68 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KWYN KG+GFI P+ G DVF+H SA+ AGL L + Q VT+D +++ +G+ Sbjct: 4 GTVKWYNSTKGFGFIAPD---NGGKDVFVHVSAIERAGLTGLADNQKVTFD-IESGRDGR 59 Query: 65 YSAENLKL 72 SA NL+L Sbjct: 60 ESASNLQL 67 >gi|329889214|ref|ZP_08267557.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC 11568] gi|328844515|gb|EGF94079.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC 11568] Length = 70 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H SAV AGL L E Q V+Y+ ++ +GK Sbjct: 4 GTVKWFNSTKGYGFIQPD---DGGKDVFVHISAVEQAGLRGLDENQKVSYEIERDRRSGK 60 Query: 65 YSAENLK 71 SA LK Sbjct: 61 ESAGQLK 67 >gi|296536432|ref|ZP_06898531.1| cold shock protein [Roseomonas cervicalis ATCC 49957] gi|296263249|gb|EFH09775.1| cold shock protein [Roseomonas cervicalis ATCC 49957] Length = 81 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP KG+GFI PE ++ DVF+H S V AGL L EG+ V ++ +Q GK Sbjct: 17 GTVKWFNPTKGFGFIQPEDGSK---DVFVHISDVQRAGLQGLNEGERVEFE-LQRGREGK 72 Query: 65 YSAENLKLV 73 SA NLK V Sbjct: 73 VSAGNLKQV 81 >gi|260425753|ref|ZP_05779733.1| conserved domain protein [Citreicella sp. SE45] gi|260423693|gb|EEX16943.1| conserved domain protein [Citreicella sp. SE45] Length = 68 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE G DVF+H SA+ AGL L + Q VTYD V++ +G+ Sbjct: 4 GTVKWFNSTKGFGFIEPE---NGGRDVFVHISAIERAGLTGLADAQKVTYD-VESGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESAINLAL 67 >gi|258541245|ref|YP_003186678.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-01] gi|329114852|ref|ZP_08243608.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001] gi|256632323|dbj|BAH98298.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-01] gi|256635380|dbj|BAI01349.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-03] gi|256638435|dbj|BAI04397.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-07] gi|256641489|dbj|BAI07444.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-22] gi|256644544|dbj|BAI10492.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-26] gi|256647599|dbj|BAI13540.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-32] gi|256650652|dbj|BAI16586.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653643|dbj|BAI19570.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-12] gi|326695749|gb|EGE47434.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001] Length = 68 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP KG+GFI P+ G D F+H S + AG+ LTEGQ V+Y+ ++ NGK Sbjct: 4 GTVKWFNPTKGFGFIQPD---NGGQDAFVHISELERAGMHTLTEGQQVSYE-LEAGRNGK 59 Query: 65 YSAENLKLV 73 SA ++K + Sbjct: 60 TSAVSIKAI 68 >gi|260428302|ref|ZP_05782281.1| conserved domain protein [Citreicella sp. SE45] gi|260422794|gb|EEX16045.1| conserved domain protein [Citreicella sp. SE45] Length = 68 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PEG ++ DVF+H SAV +GL L + Q V+Y+ +Q+ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPEGGSK---DVFVHISAVERSGLTELKDNQKVSYE-LQSGRDGR 59 Query: 65 YSAENLKLV 73 SA NL+L+ Sbjct: 60 ESAINLELL 68 >gi|260461754|ref|ZP_05810000.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|319785303|ref|YP_004144779.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032395|gb|EEW33660.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|317171191|gb|ADV14729.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 70 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ + Y+ Q+ GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---NGGQDVFVHISAVERAGLSTLNEGQKINYEVEQDRRTGK 60 Query: 65 YSAENL 70 SA +L Sbjct: 61 SSAGSL 66 >gi|159184158|ref|NP_353140.2| cold shock protein [Agrobacterium tumefaciens str. C58] gi|159139492|gb|AAK85925.2| cold shock protein [Agrobacterium tumefaciens str. C58] Length = 69 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ ++ DVF+H SAV AGL L +GQ ++Y+ +Q+ +GK Sbjct: 4 GTVKWFNATKGYGFIQPDDGSQ---DVFVHISAVERAGLTALNDGQKLSYELMQDRRSGK 60 Query: 65 YSAENL 70 SA L Sbjct: 61 MSAGEL 66 >gi|149915750|ref|ZP_01904275.1| glycine dehydrogenase [Roseobacter sp. AzwK-3b] gi|149810332|gb|EDM70177.1| glycine dehydrogenase [Roseobacter sp. AzwK-3b] Length = 68 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE G DVF+H SAV +GL L + Q VTYD V+ +G+ Sbjct: 4 GTVKWFNSTKGFGFIAPE---TGGKDVFVHISAVERSGLTGLADDQKVTYD-VEAGRDGR 59 Query: 65 YSAENLKL 72 SA NL+L Sbjct: 60 ESATNLQL 67 >gi|13488430|ref|NP_109437.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|14028184|dbj|BAB54776.1| cold shock protein [Mesorhizobium loti MAFF303099] Length = 69 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ + Y+ ++ +GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---SGGADAFVHISAVERAGMREIVEGQKIGYEMERDSKSGK 60 Query: 65 YSAENLKLV 73 SA NL+ V Sbjct: 61 MSACNLQAV 69 >gi|254500655|ref|ZP_05112806.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] gi|222436726|gb|EEE43405.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] Length = 74 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ + YD ++ +GK Sbjct: 9 GTVKWFNSTKGFGFIQPD---NGGPDAFVHISAVERAGMHEIVEGQKIGYDMERDSKSGK 65 Query: 65 YSAENLK 71 SA NL+ Sbjct: 66 MSACNLQ 72 >gi|114765785|ref|ZP_01444880.1| cold shock family protein [Pelagibaca bermudensis HTCC2601] gi|114541892|gb|EAU44928.1| cold shock family protein [Roseovarius sp. HTCC2601] Length = 68 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G DVF+H SAV AGL L++ Q VTYD V+ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPDAG---GKDVFVHISAVERAGLTGLSDDQKVTYD-VEAGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESASNLAL 67 >gi|148544717|ref|YP_001272087.1| cold-shock DNA-binding protein family protein [Lactobacillus reuteri DSM 20016] gi|184154069|ref|YP_001842410.1| cold shock protein [Lactobacillus reuteri JCM 1112] gi|194466976|ref|ZP_03072963.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri 100-23] gi|227363842|ref|ZP_03847947.1| cold-shock protein [Lactobacillus reuteri MM2-3] gi|325683052|ref|ZP_08162568.1| cold-shock domain family protein [Lactobacillus reuteri MM4-1A] gi|148531751|gb|ABQ83750.1| cold-shock DNA-binding protein family [Lactobacillus reuteri DSM 20016] gi|183225413|dbj|BAG25930.1| cold shock protein [Lactobacillus reuteri JCM 1112] gi|194454012|gb|EDX42909.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri 100-23] gi|227071069|gb|EEI09387.1| cold-shock protein [Lactobacillus reuteri MM2-3] gi|324977402|gb|EGC14353.1| cold-shock domain family protein [Lactobacillus reuteri MM4-1A] Length = 66 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N DKGYGFIT E SGDDVF+H SA+ G +L+EGQ VT+D Sbjct: 1 MEQGTVKWFNDDKGYGFITRE----SGDDVFVHFSAIQGDGFKSLSEGQHVTFD 50 >gi|222082689|ref|YP_002542054.1| cold shock protein [Agrobacterium radiobacter K84] gi|221727368|gb|ACM30457.1| cold shock protein [Agrobacterium radiobacter K84] Length = 74 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G D F+H SAV AG+ + EGQ + Y+ +++ +GK Sbjct: 9 GTVKWFNSTKGFGFIQPD---DGGADAFVHISAVERAGMREIVEGQKIAYELERDNKSGK 65 Query: 65 YSAENLK 71 SA NL+ Sbjct: 66 LSACNLQ 72 >gi|163733825|ref|ZP_02141267.1| cold shock protein CspA-related protein, putative [Roseobacter litoralis Och 149] gi|161392936|gb|EDQ17263.1| cold shock protein CspA-related protein, putative [Roseobacter litoralis Och 149] Length = 68 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G ++ DVF+H SAV AGL L++ Q VT+D ++ +G+ Sbjct: 4 GTVKWFNSTKGFGFIAPDGGSK---DVFVHISAVERAGLTGLSDDQKVTFD-IEAGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESASNLAL 67 >gi|209547690|ref|YP_002279607.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533446|gb|ACI53381.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 69 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D +++ +GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFDLERDNKSGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 MSACNLQ 67 >gi|148261824|ref|YP_001235951.1| cold-shock DNA-binding domain-containing protein [Acidiphilium cryptum JF-5] gi|326405328|ref|YP_004285410.1| cold shock protein [Acidiphilium multivorum AIU301] gi|146403505|gb|ABQ32032.1| cold-shock DNA-binding protein family [Acidiphilium cryptum JF-5] gi|325052190|dbj|BAJ82528.1| cold shock protein [Acidiphilium multivorum AIU301] Length = 68 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ ++ DVF+H SAV AGL + EGQ + ++ V+ GK Sbjct: 4 GTVKWFNATKGYGFIQPDDGSK---DVFVHISAVERAGLGRIDEGQRLEFE-VRKGREGK 59 Query: 65 YSAENLK 71 SAENLK Sbjct: 60 MSAENLK 66 >gi|298292870|ref|YP_003694809.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296929381|gb|ADH90190.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 69 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ ++Y+ + +GK Sbjct: 4 GTVKWFNGQKGFGFIQPD---NGGPDVFVHISAVERAGLVGLNEGQKISYEVETDRRSGK 60 Query: 65 YSAENLKLV 73 SA +L+ V Sbjct: 61 SSAGSLQAV 69 >gi|163735233|ref|ZP_02142668.1| cold shock protein CspA [Roseobacter litoralis Och 149] gi|161391447|gb|EDQ15781.1| cold shock protein CspA [Roseobacter litoralis Och 149] Length = 68 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G ++ DVF+H SAV AGL L + Q VT+D +++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERAGLTGLADNQKVTFD-IEDGRDGR 59 Query: 65 YSAENLKL 72 SA N+ L Sbjct: 60 QSATNIAL 67 >gi|296446943|ref|ZP_06888878.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] gi|296255510|gb|EFH02602.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] Length = 70 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI P G DVF+H +AV AGL L EGQ ++Y+ V + +GK Sbjct: 4 GVVKWFNAHKGFGFIQP---AAGGADVFVHITAVERAGLRGLAEGQKISYEIVVDSRSGK 60 Query: 65 YSAENLKL 72 SA+ +++ Sbjct: 61 SSADRIEV 68 >gi|159042565|ref|YP_001531359.1| cold-shock DNA-binding domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157910325|gb|ABV91758.1| cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL 12] Length = 68 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G + DVF+H SAV AGL L + Q VT+D +++ +G+ Sbjct: 4 GTVKWFNATKGFGFIAPDGGSR---DVFVHISAVERAGLTGLEDNQKVTFD-IESGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESAANLAL 67 >gi|84502886|ref|ZP_01000999.1| cold shock family protein [Oceanicola batsensis HTCC2597] gi|84388869|gb|EAQ01739.1| cold shock family protein [Oceanicola batsensis HTCC2597] Length = 68 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PEG ++ DVF+H SAV +GL L +G V++D +++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPEGGSK---DVFVHISAVERSGLTGLQDGAKVSFD-LESGRDGR 59 Query: 65 YSAENLKLV 73 SA NL L+ Sbjct: 60 ESASNLALL 68 >gi|332187928|ref|ZP_08389661.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17] gi|332012089|gb|EGI54161.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17] Length = 70 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKGYGFI+P+G G+D F+H SAV AG+ +L + Q + Y+ ++ D Sbjct: 1 MSMSGTVKFFNADKGYGFISPDG---GGNDAFVHISAVERAGMISLNQNQRLNYE-LEQD 56 Query: 61 ANGKYSAENLK 71 GK SA NL+ Sbjct: 57 RRGKTSAVNLQ 67 >gi|126731183|ref|ZP_01746991.1| cold shock family protein [Sagittula stellata E-37] gi|126708485|gb|EBA07543.1| cold shock family protein [Sagittula stellata E-37] Length = 68 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE G DVF+H SAV +GL L + Q V+Y+ +Q +GK Sbjct: 4 GTVKWFNTTKGYGFIQPE---SGGKDVFVHISAVERSGLTGLADNQKVSYE-LQTGRDGK 59 Query: 65 YSAENLKLV 73 SA NL+L+ Sbjct: 60 ESAGNLELL 68 >gi|325291550|ref|YP_004277414.1| cold shock protein [Agrobacterium sp. H13-3] gi|325059403|gb|ADY63094.1| cold shock protein [Agrobacterium sp. H13-3] Length = 69 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ ++ DVF+H SAV AG+ +L +GQ ++Y+ Q+ +GK Sbjct: 4 GTVKWFNATKGYGFIQPDDGSQ---DVFVHISAVERAGMTSLNDGQKLSYELTQDRRSGK 60 Query: 65 YSAENL 70 SA L Sbjct: 61 MSAGEL 66 >gi|163794103|ref|ZP_02188076.1| Cold-shock DNA-binding domain protein [alpha proteobacterium BAL199] gi|159180717|gb|EDP65236.1| Cold-shock DNA-binding domain protein [alpha proteobacterium BAL199] Length = 68 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H +AV +GL L EGQ + Y+ ++ NGK Sbjct: 4 GTVKWFNTTKGYGFIKPD---DGGADVFVHITAVQRSGLQGLNEGQAIMYE-MKPQRNGK 59 Query: 65 YSAENLK 71 +AE LK Sbjct: 60 MAAEELK 66 >gi|254441253|ref|ZP_05054746.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter antarcticus 307] gi|198251331|gb|EDY75646.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter antarcticus 307] Length = 68 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PEG ++ DVF+H SAV AGL L + Q VT+D +++ +G+ Sbjct: 4 GTVKWFNSTKGFGFIAPEGGSK---DVFVHISAVEQAGLTGLNDDQKVTFD-IESGRDGR 59 Query: 65 YSAENLKL 72 SA N+ L Sbjct: 60 ESAANIVL 67 >gi|89097123|ref|ZP_01170013.1| cold-shock protein [Bacillus sp. NRRL B-14911] gi|89087946|gb|EAR67057.1| cold-shock protein [Bacillus sp. NRRL B-14911] Length = 66 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG GDDVF+H SA+ S G +L EGQ VT+D V+ A Sbjct: 1 MEQGTVKWFNAEKGFGFIEREG----GDDVFVHFSAIQSEGFKSLDEGQKVTFD-VEQGA 55 Query: 62 NGKYSA 67 G +A Sbjct: 56 RGPQAA 61 >gi|126731842|ref|ZP_01747646.1| cold shock protein CspA [Sagittula stellata E-37] gi|126707669|gb|EBA06731.1| cold shock protein CspA [Sagittula stellata E-37] Length = 68 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE ++ DVFLH SAV AG+ + +GQ VT+D V++ +G+ Sbjct: 4 GTVKWFNSTKGFGFIQPEHGSK---DVFLHISAVERAGINRIEDGQAVTFD-VESGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESAINLAL 67 >gi|288959551|ref|YP_003449892.1| cold shock protein [Azospirillum sp. B510] gi|288911859|dbj|BAI73348.1| cold shock protein [Azospirillum sp. B510] Length = 69 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE + DVF+H +AV +GL L+EGQ V ++ + + NGK Sbjct: 4 GTVKWFNTTKGYGFIAPEAGAK---DVFVHITAVQRSGLHALSEGQRVQFEVARGN-NGK 59 Query: 65 YSAENLKLV 73 SA N+ +V Sbjct: 60 DSAVNISVV 68 >gi|294678657|ref|YP_003579272.1| cold shock-like protein CspD [Rhodobacter capsulatus SB 1003] gi|294477477|gb|ADE86865.1| cold shock-like protein CspD [Rhodobacter capsulatus SB 1003] Length = 68 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI PE G DVF+H SAV AGL L +GQ + YD ++ +G Sbjct: 3 KGTVKWFNQTKGFGFIAPE---SGGKDVFVHISAVERAGLRGLNDGQAINYD-LEKGRDG 58 Query: 64 KYSAENLKL 72 + SA NL + Sbjct: 59 RESAINLAI 67 >gi|218670224|ref|ZP_03519895.1| probable cold shock protein [Rhizobium etli GR56] Length = 69 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D ++ +GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---NGGTDAFVHISAVERAGMRELVEGQKIGFDLERDHKSGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 MSACNLQ 67 >gi|149203521|ref|ZP_01880491.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035] gi|149143354|gb|EDM31393.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035] Length = 68 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G DVF+H SAV AGL L + Q VT+D +++ +G+ Sbjct: 4 GTVKWFNSTKGFGFIAPD---NGGKDVFVHISAVERAGLTGLADNQKVTFD-IESGRDGR 59 Query: 65 YSAENLKL 72 SA NL+L Sbjct: 60 ESASNLQL 67 >gi|13472286|ref|NP_103853.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|260464020|ref|ZP_05812215.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|319781978|ref|YP_004141454.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14023031|dbj|BAB49639.1| probable cold shock protein [Mesorhizobium loti MAFF303099] gi|259030191|gb|EEW31472.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|317167866|gb|ADV11404.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 70 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ + ++ Q+ GK Sbjct: 4 GTVKWFNATKGFGFIQPDAG---GADVFVHISAVERAGLSTLVEGQKINFEIEQDRRTGK 60 Query: 65 YSAENL 70 SA +L Sbjct: 61 SSAGSL 66 >gi|220933677|ref|YP_002512576.1| putative cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994987|gb|ACL71589.1| putative cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 67 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFITPE + G DVF+H SA+ ++G L EGQ+V+++ V N Sbjct: 1 MSKGTVKWFNESKGFGFITPE---DGGKDVFVHFSAIEASGFRTLAEGQMVSFE-VTNGP 56 Query: 62 NGKYSAENLKLV 73 G +A N+K V Sbjct: 57 KG-LAAANVKPV 67 >gi|99080915|ref|YP_613069.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TM1040] gi|99037195|gb|ABF63807.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040] Length = 68 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI EG + +DVF+H SAV +GL L +GQ VT++ +Q+ +G+ Sbjct: 4 GTVKWFNSTKGYGFIAVEGRS---NDVFVHISAVERSGLTGLADGQAVTFE-IQSGRDGR 59 Query: 65 YSAENLKL 72 SA +L L Sbjct: 60 ESATDLAL 67 >gi|296532321|ref|ZP_06895059.1| CspA family cold shock transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296267345|gb|EFH13232.1| CspA family cold shock transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 67 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H +AV AGL L E Q ++YD V GK Sbjct: 4 GTVKWFNATKGFGFIVPQ---DGGKDVFVHITAVQKAGLQGLNENQKISYDVVME--RGK 58 Query: 65 YSAENLK 71 +A NLK Sbjct: 59 AAATNLK 65 >gi|315500325|ref|YP_004089128.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] gi|315418337|gb|ADU14977.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] Length = 67 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP+KG+GFI P+ + G+DVF+H SA+ AG L EGQ + Y+ VQ+D GK Sbjct: 4 GIVKWFNPNKGFGFIQPD---DGGNDVFVHISAIERAGWRMLVEGQKIAYE-VQSD-RGK 58 Query: 65 YSAENLK 71 +A NL+ Sbjct: 59 AAAVNLQ 65 >gi|254293790|ref|YP_003059813.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] gi|254042321|gb|ACT59116.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] Length = 69 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K+YN KG+GFI P+ G+DVF+H +A+ AG+ L+EGQ V++D Q+ Sbjct: 1 METGTVKFYNDTKGFGFIAPD---NGGNDVFVHATALERAGMNGLSEGQKVSFDTAQDKR 57 Query: 62 NGKYSAENLK 71 +GK + +N++ Sbjct: 58 SGKMAVDNIQ 67 >gi|116255743|ref|YP_771576.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|209546040|ref|YP_002277930.1| cold-shock protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|241666510|ref|YP_002984594.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115260391|emb|CAK03495.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|209538897|gb|ACI58830.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240861967|gb|ACS59632.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 69 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G D F+H SAV AG+ + EGQ + Y+ +++ +GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---DGGADAFVHISAVERAGMREIVEGQKIGYELERDNKSGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 MSACNLQ 67 >gi|89056116|ref|YP_511567.1| cold-shock DNA-binding protein family protein [Jannaschia sp. CCS1] gi|88865665|gb|ABD56542.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1] Length = 68 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE G DVF+H SAV +GL L + Q VTYD ++ +G+ Sbjct: 4 GTVKWFNSTKGFGFIAPE---TGGKDVFVHISAVERSGLTGLADNQKVTYD-LEAGRDGR 59 Query: 65 YSAENLKLV 73 SA NLK V Sbjct: 60 ESAVNLKAV 68 >gi|86356092|ref|YP_467984.1| cold shock protein [Rhizobium etli CFN 42] gi|190890106|ref|YP_001976648.1| cold shock protein [Rhizobium etli CIAT 652] gi|218461048|ref|ZP_03501139.1| probable cold shock protein [Rhizobium etli Kim 5] gi|218515057|ref|ZP_03511897.1| probable cold shock protein [Rhizobium etli 8C-3] gi|86280194|gb|ABC89257.1| probable cold shock protein [Rhizobium etli CFN 42] gi|190695385|gb|ACE89470.1| probable cold shock protein [Rhizobium etli CIAT 652] Length = 74 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D ++ +GK Sbjct: 9 GTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFDLERDHKSGK 65 Query: 65 YSAENLK 71 SA NL+ Sbjct: 66 MSACNLQ 72 >gi|119383705|ref|YP_914761.1| cold-shock DNA-binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119373472|gb|ABL69065.1| cold-shock DNA-binding protein family [Paracoccus denitrificans PD1222] Length = 68 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H SAV AGL L + Q + Y+ +Q+ +G+ Sbjct: 4 GTVKWFNATKGYGFIAPD---DGGKDVFVHISAVERAGLTGLNDNQKIAYE-LQSGRDGR 59 Query: 65 YSAENLKLV 73 SA +LKL+ Sbjct: 60 SSASDLKLL 68 >gi|163853346|ref|YP_001641389.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218532203|ref|YP_002423019.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240140762|ref|YP_002965242.1| cold shock protein A [Methylobacterium extorquens AM1] gi|254563272|ref|YP_003070367.1| cold shock protein A [Methylobacterium extorquens DM4] gi|163664951|gb|ABY32318.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218524506|gb|ACK85091.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240010739|gb|ACS41965.1| cold shock protein A [Methylobacterium extorquens AM1] gi|254270550|emb|CAX26553.1| cold shock protein A [Methylobacterium extorquens DM4] Length = 69 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ KGYGFI P+ G DVF+H SAV AGL L EGQ V++D + Sbjct: 1 MQTGTVKWFDEVKGYGFIQPD---TGGKDVFVHISAVQQAGLRGLVEGQKVSFDVENDRR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKPAAVNLQ 67 >gi|254487779|ref|ZP_05100984.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp. GAI101] gi|214044648|gb|EEB85286.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp. GAI101] Length = 68 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+G G D+F+H SAV AGL L + Q VT+D ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPDG---GGKDIFVHISAVERAGLTGLADNQKVTFD-IEAGRDGR 59 Query: 65 YSAENLKL 72 SA N+ L Sbjct: 60 ESAGNIAL 67 >gi|121602065|ref|YP_989256.1| cold-shock DNA-binding family protein [Bartonella bacilliformis KC583] gi|120614242|gb|ABM44843.1| cold-shock DNA-binding family protein [Bartonella bacilliformis KC583] Length = 69 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI P +GS DVF+H SAV +GL +L EGQ ++Y+ +++ +G Sbjct: 4 GIVKWFNATKGFGFIQPNDGSA----DVFVHISAVERSGLNSLNEGQKISYEVLKDQRSG 59 Query: 64 KYSAENL 70 K+SA NL Sbjct: 60 KFSAGNL 66 >gi|149916334|ref|ZP_01904854.1| cold-shock DNA-binding domain protein [Roseobacter sp. AzwK-3b] gi|149809788|gb|EDM69640.1| cold-shock DNA-binding domain protein [Roseobacter sp. AzwK-3b] Length = 68 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V YD +Q+ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVGYD-LQDGRDGR 59 Query: 65 YSAENLKLV 73 A +LKL+ Sbjct: 60 QMATDLKLL 68 >gi|110678721|ref|YP_681728.1| cold shock protein CspA-related protein, putative [Roseobacter denitrificans OCh 114] gi|109454837|gb|ABG31042.1| cold shock protein CspA-related protein, putative [Roseobacter denitrificans OCh 114] Length = 68 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G ++ DVF+H SAV AGL L + Q VT+D ++ +G+ Sbjct: 4 GTVKWFNATKGFGFIAPDGGSK---DVFVHISAVERAGLTGLNDDQKVTFD-IEAGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESASNLAL 67 >gi|77465630|ref|YP_355133.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1] gi|77390048|gb|ABA81232.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1] Length = 68 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P ++ DVF+H +A+ AG+ L +GQ +TYD ++ D NG+ Sbjct: 4 GTVKWFNATKGFGFIAPAHGSK---DVFVHVTALERAGIRQLNDGQALTYD-METDRNGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESATNLVL 67 >gi|254512032|ref|ZP_05124099.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae bacterium KLH11] gi|221535743|gb|EEE38731.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae bacterium KLH11] Length = 68 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE E G DVF+H SAV +GL L + Q VTY+ ++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVTYE-LRAGRDGR 59 Query: 65 YSAENLKL 72 SA+N++L Sbjct: 60 ESADNIEL 67 >gi|312870567|ref|ZP_07730683.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3] gi|311093907|gb|EFQ52235.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3] Length = 66 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKGYGFI S ESGDDVF+H SA+ G +L EGQ V++D + D Sbjct: 1 MEQGTVKWFNNDKGYGFI----SRESGDDVFVHFSAIQGEGFKSLDEGQKVSFDVEEGD 55 >gi|296115724|ref|ZP_06834350.1| cold-shock DNA-binding domain protein [Gluconacetobacter hansenii ATCC 23769] gi|295977701|gb|EFG84453.1| cold-shock DNA-binding domain protein [Gluconacetobacter hansenii ATCC 23769] Length = 68 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GF+ + T DVF+H SAV AGL L EGQ V+Y+ ++ NGK Sbjct: 4 GTVKWFNAQKGFGFLEADDGTA---DVFVHISAVERAGLHGLNEGQKVSYE-LETGRNGK 59 Query: 65 YSAENLKLV 73 SA NL++V Sbjct: 60 TSAANLQVV 68 >gi|84514336|ref|ZP_01001700.1| cold shock protein CspA [Loktanella vestfoldensis SKA53] gi|84511387|gb|EAQ07840.1| cold shock protein CspA [Loktanella vestfoldensis SKA53] Length = 68 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PEG ++ DVF+H SAV +GL L + Q VT+D +++ +G+ Sbjct: 4 GTVKWFNATKGFGFIAPEGGSK---DVFVHISAVERSGLTGLKDDQKVTFD-IESGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESAINLAL 67 >gi|325168917|ref|YP_004280707.1| cold-shock DNA-binding domain protein [Agrobacterium sp. H13-3] gi|325064640|gb|ADY68329.1| cold-shock DNA-binding domain protein [Agrobacterium sp. H13-3] Length = 69 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + ++ +++ +GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFELERDNKSGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 MSATNLQ 67 >gi|163739594|ref|ZP_02147003.1| cold shock protein CspA-related protein, putative [Phaeobacter gallaeciensis BS107] gi|161387053|gb|EDQ11413.1| cold shock protein CspA-related protein, putative [Phaeobacter gallaeciensis BS107] Length = 68 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PEG + DVF+H SA+ AGL L + Q VT+D ++ +G+ Sbjct: 4 GTVKWFNSTKGFGFIAPEGGSR---DVFVHISALERAGLTTLNDDQKVTFD-IEAGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESAANLAL 67 >gi|312115752|ref|YP_004013348.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311220881|gb|ADP72249.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 69 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN KGYGFI P+ + G DVF+H SA+ AGL L EGQ V+++ + K Sbjct: 4 GVVKWYNSQKGYGFIQPD---DGGKDVFVHVSALERAGLRGLVEGQKVSFEIQTDRRTDK 60 Query: 65 YSAENLKL 72 SA NL++ Sbjct: 61 TSAGNLQV 68 >gi|298291123|ref|YP_003693062.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296927634|gb|ADH88443.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 70 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KGYGFI P+ G DVF+H SAV +GL L +G+ ++++ + Sbjct: 1 MADTGTVKWFNEQKGYGFIQPD---SGGKDVFVHISAVQRSGLQGLRDGEKISFELQTDQ 57 Query: 61 ANGKYSAENLK 71 +GK SA NL+ Sbjct: 58 RSGKTSAVNLR 68 >gi|218281154|ref|ZP_03487680.1| hypothetical protein EUBIFOR_00241 [Eubacterium biforme DSM 3989] gi|218217600|gb|EEC91138.1| hypothetical protein EUBIFOR_00241 [Eubacterium biforme DSM 3989] Length = 90 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 6/73 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFIT +E G DVF+H S++ S G L EGQ VTYD V++D + Sbjct: 24 GKVKWFNAEKGYGFIT----SEDGKDVFVHYSSINSEGFKTLEEGQTVTYDVVESDRGQQ 79 Query: 65 YSAENLKLVPKSS 77 A N+ +V ++ Sbjct: 80 --ANNVTVVDTAA 90 >gi|118592774|ref|ZP_01550163.1| cold shock protein [Stappia aggregata IAM 12614] gi|118434544|gb|EAV41196.1| cold shock protein [Stappia aggregata IAM 12614] Length = 69 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H +AV AG+ + EGQ + YD ++ +GK Sbjct: 4 GTVKWFNSSKGFGFIQPD---NGGPDAFVHITAVERAGMHEIVEGQKIGYDMERDTKSGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 MSACNLQ 67 >gi|86139243|ref|ZP_01057813.1| cold shock family protein [Roseobacter sp. MED193] gi|85824087|gb|EAQ44292.1| cold shock family protein [Roseobacter sp. MED193] Length = 120 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G T+ DVF+H SAV +GL L + Q VT+D ++ +G+ Sbjct: 56 GTVKWFNSTKGFGFIAPDGGTK---DVFVHISAVERSGLTGLADNQKVTFD-IEPGRDGR 111 Query: 65 YSAENLKLV 73 +A NL LV Sbjct: 112 EAAVNLALV 120 >gi|312877876|ref|ZP_07737822.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311795339|gb|EFR11722.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 66 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+NP+KGYGFI S ++G+DVF+H SA+ G L EGQ+V +D V+ + Sbjct: 2 RGRVKWFNPEKGYGFI----SADNGEDVFVHFSAINMEGYKTLAEGQMVEFDIVKTE 54 >gi|254495825|ref|ZP_05108737.1| cold shock protein CspD [Legionella drancourtii LLAP12] gi|254354982|gb|EET13605.1| cold shock protein CspD [Legionella drancourtii LLAP12] Length = 76 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+N KG+GFI PE + GDD+F+H SA+ +G L GQ+VTYD Q D Sbjct: 3 RGEVKWFNNAKGWGFIIPE---QGGDDIFVHFSAIHGSGYKTLVPGQMVTYDVGQGD 56 >gi|170745312|ref|YP_001766769.1| cold-shock DNA-binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170658913|gb|ACB27967.1| cold-shock DNA-binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 69 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AG+ L EGQ V+Y+ + GK Sbjct: 4 GTVKWFNDTKGFGFIQPD---DGGKDVFVHISAVERAGMQGLNEGQKVSYEMETDRRTGK 60 Query: 65 YSAENLK 71 SA +L+ Sbjct: 61 QSAGSLQ 67 >gi|150376596|ref|YP_001313192.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|307315623|ref|ZP_07595160.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307321715|ref|ZP_07601104.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|150031143|gb|ABR63259.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] gi|306892612|gb|EFN23409.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306898690|gb|EFN29353.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 69 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ ++Y+ +++ +GK Sbjct: 4 GTVKWFNSTKGFGFIEPD---NGGADAFVHISAVERAGMREIVEGQKLSYELERDNKSGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 MSACNLQ 67 >gi|83944389|ref|ZP_00956843.1| cold shock family protein [Sulfitobacter sp. EE-36] gi|83953430|ref|ZP_00962152.1| cold shock family protein [Sulfitobacter sp. NAS-14.1] gi|254486516|ref|ZP_05099721.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp. GAI101] gi|83842398|gb|EAP81566.1| cold shock family protein [Sulfitobacter sp. NAS-14.1] gi|83844712|gb|EAP82595.1| cold shock family protein [Sulfitobacter sp. EE-36] gi|214043385|gb|EEB84023.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp. GAI101] Length = 68 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G ++ DVF+H SAV AGL L + Q VT+D ++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERAGLTGLADNQKVTFD-IEAGRDGR 59 Query: 65 YSAENLKL 72 SA N+ L Sbjct: 60 ESASNIAL 67 >gi|324997373|ref|ZP_08118485.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia sp. P1] Length = 67 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 48/71 (67%), Gaps = 7/71 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFITP+G G D+F+H SA+ S+G +L EGQ VT++ Q G Sbjct: 3 QGTVKWFNAEKGYGFITPDG---GGQDLFVHFSAIQSSGYRSLDEGQAVTFEVTQ----G 55 Query: 64 KYSAENLKLVP 74 + + ++VP Sbjct: 56 QKGPQADQVVP 66 >gi|254463779|ref|ZP_05077190.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] gi|206684687|gb|EDZ45169.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] Length = 68 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE + D+F+H SA+ AG+ L +GQ VT+D +++ +G+ Sbjct: 4 GTVKWFNSQKGFGFIAPEHGSR---DIFVHISALERAGIQQLDDGQAVTFD-IESGRDGR 59 Query: 65 YSAENLKLV 73 SA NL L Sbjct: 60 ESASNLALA 68 >gi|114764472|ref|ZP_01443697.1| cold shock family protein [Pelagibaca bermudensis HTCC2601] gi|114543039|gb|EAU46058.1| cold shock family protein [Roseovarius sp. HTCC2601] Length = 68 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PEG ++ DVF+H SA+ +GL L + Q V+Y+ +Q+ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPEGGSK---DVFVHISALERSGLTELKDNQKVSYE-LQSGRDGR 59 Query: 65 YSAENLKLV 73 SA NL+L+ Sbjct: 60 ESAINLELL 68 >gi|119385865|ref|YP_916920.1| cold-shock DNA-binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119376460|gb|ABL71224.1| cold-shock DNA-binding protein family [Paracoccus denitrificans PD1222] Length = 68 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE G DVFLH SA+ AGL ++ +GQ VT++ +++ +G+ Sbjct: 4 GTVKWFNAAKGFGFIAPE---HGGKDVFLHISALERAGLNSVADGQAVTFE-IESGRDGR 59 Query: 65 YSAENLKLV 73 SA L L Sbjct: 60 ESASRLALA 68 >gi|197106226|ref|YP_002131603.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] gi|196479646|gb|ACG79174.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] Length = 69 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AG+ L EGQ ++++ ++ +GK Sbjct: 4 GTVKWFNATKGFGFIQPD---DGGTDVFVHISAVERAGMAGLHEGQKLSFEVQKDPRSGK 60 Query: 65 YSAENLK 71 +A NL+ Sbjct: 61 SAAANLQ 67 >gi|150389414|ref|YP_001319463.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149949276|gb|ABR47804.1| putative cold-shock DNA-binding domain protein [Alkaliphilus metalliredigens QYMF] Length = 66 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KGYGFIT E+GDDVF+H SA+ G L EGQ V ++ +Q D Sbjct: 1 MEKGTVKWFNSEKGYGFIT----RENGDDVFVHFSAITMDGFKTLEEGQAVQFEIIQGD 55 >gi|114797127|ref|YP_758844.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114737301|gb|ABI75426.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 69 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI P+ + G D+F+H SAV +GL L E Q ++Y+ +++ GK Sbjct: 4 GKVKWFNDQKGFGFIKPD---DGGADIFVHISAVERSGLKTLAENQSISYELYKDERRGK 60 Query: 65 YSAENLKLV 73 SA +LK++ Sbjct: 61 TSAVDLKVL 69 >gi|154252646|ref|YP_001413470.1| cold-shock DNA-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154156596|gb|ABS63813.1| putative cold-shock DNA-binding domain protein [Parvibaculum lavamentivorans DS-1] Length = 67 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KGYGFI P ++ G DVF+H SAV AG+ L EGQ + Y+ V GK Sbjct: 4 GVVKWFNTQKGYGFIQP---SDGGRDVFVHISAVERAGMSTLNEGQKINYELVTE--KGK 58 Query: 65 YSAENLKL 72 SA NL + Sbjct: 59 TSAANLTV 66 >gi|297626180|ref|YP_003687943.1| Cold shock-like protein CspA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921945|emb|CBL56505.1| Cold shock-like protein CspA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 68 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI +GS+ DDVF+H SA+ S G +L EGQ V +D Q + Sbjct: 4 GTVKWFNAEKGYGFIAVDGSS---DDVFVHYSAIDSTGFRSLDEGQKVEFDIAQGPKGQQ 60 Query: 65 YSAENLKLV 73 AE++KLV Sbjct: 61 --AEHVKLV 67 >gi|84501623|ref|ZP_00999795.1| cold shock family protein [Oceanicola batsensis HTCC2597] gi|84390244|gb|EAQ02803.1| cold shock family protein [Oceanicola batsensis HTCC2597] Length = 68 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V Y+ +Q+ +G+ Sbjct: 4 GTVKWFNTTKGYGFIEPE---EGGKDVFVHISAVERSGLTGLADNQKVGYE-LQDGRDGR 59 Query: 65 YSAENLKLV 73 A +LKL+ Sbjct: 60 KMASDLKLL 68 >gi|294499464|ref|YP_003563164.1| cold shock protein [Bacillus megaterium QM B1551] gi|295704814|ref|YP_003597889.1| cold shock protein [Bacillus megaterium DSM 319] gi|294349401|gb|ADE69730.1| cold shock protein [Bacillus megaterium QM B1551] gi|294802473|gb|ADF39539.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N +KG+GFI EG GDDVF+H SA+ S G +L EGQ VT+D Q Sbjct: 1 MEQGKVKWFNAEKGFGFIEREG----GDDVFVHFSAIQSEGFKSLDEGQAVTFDVEQ 53 >gi|163744653|ref|ZP_02152013.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45] gi|161381471|gb|EDQ05880.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45] Length = 68 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G ++ DVF+H SAV AGL L + Q VT+D ++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERAGLTGLADNQKVTFD-IEAGRDGR 59 Query: 65 YSAENLKL 72 SA N+ L Sbjct: 60 ESATNIAL 67 >gi|84685583|ref|ZP_01013480.1| cold shock family protein [Maritimibacter alkaliphilus HTCC2654] gi|84666249|gb|EAQ12722.1| cold shock family protein [Rhodobacterales bacterium HTCC2654] Length = 68 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P +E G DVF+H SAV +GL L + Q V+Y+ +Q +G+ Sbjct: 4 GTVKWFNATKGFGFIEP---SEGGKDVFVHISAVERSGLTGLADNQKVSYE-LQAGRDGR 59 Query: 65 YSAENLKLV 73 SA NL+L+ Sbjct: 60 ESAANLELL 68 >gi|158321031|ref|YP_001513538.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158141230|gb|ABW19542.1| cold-shock DNA-binding domain protein [Alkaliphilus oremlandii OhILAs] Length = 66 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KGYGFI S E+GDDVF+H SA+ G L EGQ V ++ VQ D Sbjct: 1 MEKGTVKWFNSEKGYGFI----SRENGDDVFVHYSAITMDGFKTLEEGQAVNFEIVQGD 55 >gi|323487951|ref|ZP_08093207.1| cold shock protein [Planococcus donghaensis MPA1U2] gi|323398375|gb|EGA91165.1| cold shock protein [Planococcus donghaensis MPA1U2] Length = 66 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N +KG+GFI EG GDDVF+H SA+ S G +L EGQ VT+D Q Sbjct: 1 MEQGKVKWFNSEKGFGFIEREG----GDDVFVHFSAIQSEGFKSLDEGQEVTFDIEQ 53 >gi|241518615|ref|YP_002979243.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863028|gb|ACS60692.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 69 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + ++ +++ +GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFELERDNKSGK 60 Query: 65 YSAENLK 71 SA NL+ Sbjct: 61 MSACNLQ 67 >gi|227544424|ref|ZP_03974473.1| cold-shock protein [Lactobacillus reuteri CF48-3A] gi|300908271|ref|ZP_07125736.1| cold-shock domain family protein [Lactobacillus reuteri SD2112] gi|77745315|gb|ABB02558.1| putative cold shock protein [Lactobacillus reuteri] gi|227185587|gb|EEI65658.1| cold-shock protein [Lactobacillus reuteri CF48-3A] gi|300894518|gb|EFK87875.1| cold-shock domain family protein [Lactobacillus reuteri SD2112] Length = 66 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKGYGFIT E SGDDVF+H SA+ G +L+EGQ VT++ V+ Sbjct: 1 MEQGTVKWFNDDKGYGFITRE----SGDDVFVHFSAIQGDGFKSLSEGQHVTFE-VEEGE 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGLQAANVVK 65 >gi|84514337|ref|ZP_01001701.1| cold shock family protein [Loktanella vestfoldensis SKA53] gi|84511388|gb|EAQ07841.1| cold shock family protein [Loktanella vestfoldensis SKA53] Length = 80 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PEG ++ DVF+H SAV +GL L + Q V +D ++ +G+ Sbjct: 15 GTVKWFNTTKGYGFIAPEGGSK---DVFVHISAVERSGLTGLKDNQKVNFD-IEASRDGR 70 Query: 65 YSAENLKL 72 SA NL L Sbjct: 71 ESAVNLTL 78 >gi|222106593|ref|YP_002547384.1| cold shock protein [Agrobacterium vitis S4] gi|221737772|gb|ACM38668.1| cold shock protein [Agrobacterium vitis S4] Length = 70 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++K++N DKG+GFITPEG + DVF+H SA+ +AG+ L +GQ VT+D + D Sbjct: 1 MAIKGTVKFFNQDKGFGFITPEGGAK---DVFVHISALQAAGIQTLRDGQEVTFD-TEAD 56 Query: 61 ANGK 64 GK Sbjct: 57 RMGK 60 >gi|159044762|ref|YP_001533556.1| putative cold-shock DNA-binding domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157912522|gb|ABV93955.1| putative cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL 12] Length = 68 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+G + DVF+H SAV AGL L + Q VT+D ++ +G+ Sbjct: 4 GTVKWFNETKGYGFIAPDGGSR---DVFVHISAVERAGLTGLKDNQKVTFD-IEAGRDGR 59 Query: 65 YSAENLKL 72 SA N+ L Sbjct: 60 ESATNIVL 67 >gi|167647171|ref|YP_001684834.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp. K31] gi|167349601|gb|ABZ72336.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31] Length = 67 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V++D + GK Sbjct: 4 GVVKWFNGTKGFGFIQPD---DGGKDVFVHISAVERAGLRGLDEGQKVSFDTAEE--RGK 58 Query: 65 YSAENLK 71 +A NLK Sbjct: 59 IAANNLK 65 >gi|259047285|ref|ZP_05737686.1| cold shock protein [Granulicatella adiacens ATCC 49175] gi|259036061|gb|EEW37316.1| cold shock protein [Granulicatella adiacens ATCC 49175] Length = 75 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KG+GFI EG G+DVF+H SA+ S G L EGQ V +D V+ Sbjct: 9 FMEQGTVKWFNSEKGFGFIEREG----GNDVFVHFSAIQSEGFKTLEEGQAVQFD-VEEG 63 Query: 61 ANGKYSAENLKL 72 A G +A +KL Sbjct: 64 ARGPQAANVVKL 75 >gi|254464633|ref|ZP_05078044.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] gi|206685541|gb|EDZ46023.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] Length = 68 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G ++ DVF+H SAV +GL L + Q VT+D ++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERSGLTGLADNQKVTFD-IEAGRDGR 59 Query: 65 YSAENLKL 72 SA NL+L Sbjct: 60 ESAVNLQL 67 >gi|16119742|ref|NP_396448.1| cold shock protein [Agrobacterium tumefaciens str. C58] gi|15162334|gb|AAK90889.1| cold shock protein [Agrobacterium tumefaciens str. C58] Length = 74 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D ++ +GK Sbjct: 9 GTVKWFNSTKGFGFIQPD---NGGVDAFVHISAVERAGMRELVEGQKIGFDLERDMKSGK 65 Query: 65 YSAENLK 71 SA NL+ Sbjct: 66 MSACNLQ 72 >gi|329851859|ref|ZP_08266540.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] gi|328839708|gb|EGF89281.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] Length = 67 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P + G+DVF+H SAV AGL L +GQ V+Y+ +QN+ GK Sbjct: 4 GTVKWFNSTKGFGFIQP---SSGGNDVFVHISAVQRAGLQGLADGQKVSYE-LQNE-RGK 58 Query: 65 YSAENLKLV 73 +A ++KL+ Sbjct: 59 TAAVDIKLL 67 >gi|16262549|ref|NP_435342.1| CspA5 cold shock protein transcriptional regulator [Sinorhizobium meliloti 1021] gi|307300703|ref|ZP_07580478.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307319113|ref|ZP_07598543.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|14523160|gb|AAK64754.1| CspA7 cold shock protein [Sinorhizobium meliloti 1021] gi|306895220|gb|EFN25976.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306904237|gb|EFN34822.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 67 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N DKG+GFITPE + G DVF+H SA+ G +L EG V+YD Q+ G Sbjct: 3 KGTVKFFNDDKGFGFITPE---DGGTDVFVHVSALQHGG--SLKEGDKVSYDVGQDRKTG 57 Query: 64 KYSAENLKLV 73 K AEN+ ++ Sbjct: 58 KSKAENVSVL 67 >gi|206602877|gb|EDZ39358.1| cold shock protein [Leptospirillum sp. Group II '5-way CG'] Length = 68 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N +KGYGFI S E+G+D+F+H SA+ +G L EGQLV ++ +Q+ A G Sbjct: 3 RGHVKWFNANKGYGFI----SQENGEDIFVHYSAIGGSGFKTLEEGQLVEFE-IQSGAKG 57 Query: 64 KYSAENLKL 72 +A K+ Sbjct: 58 PQAANVQKV 66 >gi|260467130|ref|ZP_05813309.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|259029142|gb|EEW30439.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] Length = 68 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K+YN KG+GFI P + G DVF+H SA+ AG L EGQ + ++ ++ DA Sbjct: 1 MNTGTVKFYNGQKGFGFIQP---ADGGKDVFVHVSALERAGFPGLAEGQKLQFE-LERDA 56 Query: 62 NGKYSAENLKLV 73 G+ SA NL+L+ Sbjct: 57 KGRESAANLQLI 68 >gi|85375609|ref|YP_459671.1| cold shock protein [Erythrobacter litoralis HTCC2594] gi|84788692|gb|ABC64874.1| cold shock protein [Erythrobacter litoralis HTCC2594] Length = 253 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFI EG G+DVF+H SAV AGL L EGQ + ++ V D G Sbjct: 98 KGTVKFFNGQKGFGFIQQEGG---GEDVFVHISAVERAGLDGLAEGQELEFNLV--DRGG 152 Query: 64 KYSAENLKLV 73 K SA++L++V Sbjct: 153 KVSAQDLQVV 162 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GF+ + + D F+H SAV +GL + EG+ +D ++ D GK Sbjct: 187 GTVKFFNSMKGFGFLVRD---DGQPDAFVHISAVERSGLSGIDEGERYEFD-LEVDRRGK 242 Query: 65 YSAENL 70 YSA NL Sbjct: 243 YSAVNL 248 >gi|294509040|ref|YP_003565929.1| cold shock domain protein [Bacillus megaterium QM B1551] gi|294352344|gb|ADE72666.1| cold shock domain protein [Bacillus megaterium QM B1551] Length = 130 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ +G++KW+N DKG+GFI EG GDDVF+H SA+ G +L EGQ VT+D Q Sbjct: 64 IMTQGTVKWFNADKGFGFIEIEG----GDDVFVHFSAIQGEGFKSLEEGQKVTFDIEQ 117 >gi|116494185|ref|YP_805919.1| cold shock protein [Lactobacillus casei ATCC 334] gi|191637512|ref|YP_001986678.1| Cold shock protein A [Lactobacillus casei BL23] gi|199597005|ref|ZP_03210438.1| Cold shock protein [Lactobacillus rhamnosus HN001] gi|227534311|ref|ZP_03964360.1| CspA family cold shock transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|229553636|ref|ZP_04442361.1| CspA family cold shock transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|239629560|ref|ZP_04672591.1| cold-shock DNA-binding family protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|258507603|ref|YP_003170354.1| cold shock protein [Lactobacillus rhamnosus GG] gi|258538778|ref|YP_003173277.1| Cold shock protein [Lactobacillus rhamnosus Lc 705] gi|301065674|ref|YP_003787697.1| cold shock protein [Lactobacillus casei str. Zhang] gi|40644037|emb|CAD92346.1| cold shock protein A [Lactobacillus casei] gi|116104335|gb|ABJ69477.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC 334] gi|190711814|emb|CAQ65820.1| Cold shock protein A [Lactobacillus casei BL23] gi|199592138|gb|EDZ00212.1| Cold shock protein [Lactobacillus rhamnosus HN001] gi|205270982|emb|CAP07854.1| cold-shock protein [Lactobacillus casei BL23] gi|227188035|gb|EEI68102.1| CspA family cold shock transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|229313014|gb|EEN78987.1| CspA family cold shock transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|239528246|gb|EEQ67247.1| cold-shock DNA-binding family protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|257147530|emb|CAR86503.1| Cold shock protein [Lactobacillus rhamnosus GG] gi|257150454|emb|CAR89426.1| Cold shock protein [Lactobacillus rhamnosus Lc 705] gi|259648959|dbj|BAI41121.1| cold shock protein [Lactobacillus rhamnosus GG] gi|300438081|gb|ADK17847.1| Cold shock protein [Lactobacillus casei str. Zhang] gi|327381559|gb|AEA53035.1| Cold-shock domain family protein [Lactobacillus casei LC2W] gi|327384722|gb|AEA56196.1| Cold-shock domain family protein [Lactobacillus casei BD-II] gi|328476231|gb|EGF46922.1| cold shock protein [Lactobacillus rhamnosus MTCC 5462] Length = 66 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKGYGFIT E G DVF+H SA+ G +L EGQ V+YD Q+D Sbjct: 1 MQKGTVKWFNADKGYGFITGE----DGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSD- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAANVTKL 66 >gi|294498556|ref|YP_003562256.1| cold shock protein [Bacillus megaterium QM B1551] gi|295703859|ref|YP_003596934.1| cold shock protein [Bacillus megaterium DSM 319] gi|294348493|gb|ADE68822.1| cold shock protein [Bacillus megaterium QM B1551] gi|294801518|gb|ADF38584.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N DKG+GFI EG GDDVF+H SA+ G +L EGQ VT+D Q Sbjct: 3 QGTVKWFNADKGFGFIEIEG----GDDVFVHFSAIQGEGFKSLEEGQKVTFDIEQ 53 >gi|126739561|ref|ZP_01755253.1| cold-shock DNA-binding domain protein [Roseobacter sp. SK209-2-6] gi|126719207|gb|EBA15917.1| cold-shock DNA-binding domain protein [Roseobacter sp. SK209-2-6] Length = 68 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+G ++ DVF+H SAV +GL L + Q VT+D ++ +G+ Sbjct: 4 GTVKWFNSTKGYGFIAPDGGSK---DVFVHISAVERSGLTGLADNQKVTFD-IEPGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESAVNLAL 67 >gi|254470899|ref|ZP_05084302.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio sp. JE062] gi|211960041|gb|EEA95238.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio sp. JE062] Length = 68 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 4/70 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI PE + DVF+H SAV +GL L +GQ VT++ ++ +G Sbjct: 3 KGTVKWFNTTKGFGFIAPE---DGSKDVFVHISAVERSGLSTLADGQEVTFE-LETGRDG 58 Query: 64 KYSAENLKLV 73 + SA NL+ V Sbjct: 59 RQSAVNLETV 68 >gi|307295485|ref|ZP_07575321.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306878524|gb|EFN09744.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 68 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKGYGFI PE + G+D F+H SAV AG+ L + Q ++Y+ V+ D GK Sbjct: 4 GTVKFFNADKGYGFIAPE---DGGNDSFVHISAVERAGMVTLQKDQRLSYE-VEMDRRGK 59 Query: 65 YSAENLK 71 SA NL+ Sbjct: 60 QSAVNLQ 66 >gi|49474484|ref|YP_032526.1| cold shock protein [Bartonella quintana str. Toulouse] gi|49239988|emb|CAF26402.1| Cold shock protein [Bartonella quintana str. Toulouse] Length = 69 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P ++ DVF+H SAV +GL L EGQ ++YD + + +GK Sbjct: 4 GTVKWFNATKGFGFIQP---SDGSVDVFVHISAVERSGLSTLNEGQKISYDVLHDRRSGK 60 Query: 65 YSAENL 70 +A NL Sbjct: 61 PAAGNL 66 >gi|332637467|ref|ZP_08416330.1| cold shock protein [Weissella cibaria KACC 11862] Length = 66 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKG+GF+ S ESGDDVF+H SA+ G +L EGQ V+++ Q D Sbjct: 1 MEQGTVKWFNADKGFGFL----SRESGDDVFVHFSAIQGDGFKSLEEGQAVSFEVQQGD 55 >gi|326386099|ref|ZP_08207723.1| cold-shock DNA-binding protein family protein [Novosphingobium nitrogenifigens DSM 19370] gi|326209324|gb|EGD60117.1| cold-shock DNA-binding protein family protein [Novosphingobium nitrogenifigens DSM 19370] Length = 80 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKG+GFI P+ E GDD F+H SAV +G+ L + Q V Y+ ++ D GK Sbjct: 16 GTVKFFNTDKGFGFIAPD---EGGDDSFVHISAVERSGMRTLLKDQRVKYE-LETDKRGK 71 Query: 65 YSAENLKLV 73 +A NL++V Sbjct: 72 TAAVNLEIV 80 >gi|17987793|ref|NP_540427.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M] gi|62289409|ref|YP_221202.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|82699335|ref|YP_413909.1| ATP/GTP-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023660|ref|YP_001934428.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19] gi|225626929|ref|ZP_03784968.1| cold shock protein CSPA [Brucella ceti str. Cudo] gi|225851957|ref|YP_002732190.1| ATP/GTP-binding domain-containing protein [Brucella melitensis ATCC 23457] gi|237814894|ref|ZP_04593892.1| cold shock protein CSPA [Brucella abortus str. 2308 A] gi|254688721|ref|ZP_05151975.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus bv. 6 str. 870] gi|254693204|ref|ZP_05155032.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus bv. 3 str. Tulya] gi|254696849|ref|ZP_05158677.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus bv. 2 str. 86/8/59] gi|254701228|ref|ZP_05163056.1| ATP/GTP-binding site motif A, P-loop protein [Brucella suis bv. 5 str. 513] gi|254707848|ref|ZP_05169676.1| ATP/GTP-binding site motif A, P-loop protein [Brucella pinnipedialis M163/99/10] gi|254709571|ref|ZP_05171382.1| ATP/GTP-binding site motif A, P-loop protein [Brucella pinnipedialis B2/94] gi|254713013|ref|ZP_05174824.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti M644/93/1] gi|254716633|ref|ZP_05178444.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti M13/05/1] gi|254718601|ref|ZP_05180412.1| ATP/GTP-binding site motif A, P-loop protein [Brucella sp. 83/13] gi|254729754|ref|ZP_05188332.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus bv. 4 str. 292] gi|256031063|ref|ZP_05444677.1| ATP/GTP-binding site motif A, P-loop protein [Brucella pinnipedialis M292/94/1] gi|256044140|ref|ZP_05447047.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060557|ref|ZP_05450725.1| ATP/GTP-binding site motif A, P-loop protein [Brucella neotomae 5K33] gi|256112943|ref|ZP_05453851.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis bv. 3 str. Ether] gi|256159127|ref|ZP_05456948.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti M490/95/1] gi|256254466|ref|ZP_05460002.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti B1/94] gi|256256968|ref|ZP_05462504.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus bv. 9 str. C68] gi|256264533|ref|ZP_05467065.1| predicted protein [Brucella melitensis bv. 2 str. 63/9] gi|256368878|ref|YP_003106384.1| cold shock protein CspA [Brucella microti CCM 4915] gi|260168194|ref|ZP_05755005.1| cold shock protein CspA [Brucella sp. F5/99] gi|260545840|ref|ZP_05821581.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC 8038] gi|260563497|ref|ZP_05833983.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv. 1 str. 16M] gi|260754199|ref|ZP_05866547.1| cold shock protein cspA [Brucella abortus bv. 6 str. 870] gi|260757419|ref|ZP_05869767.1| cold shock protein cspA [Brucella abortus bv. 4 str. 292] gi|260761244|ref|ZP_05873587.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883224|ref|ZP_05894838.1| cold shock protein cspA [Brucella abortus bv. 9 str. C68] gi|261213446|ref|ZP_05927727.1| cold shock protein cspA [Brucella abortus bv. 3 str. Tulya] gi|261218434|ref|ZP_05932715.1| predicted protein [Brucella ceti M13/05/1] gi|261221638|ref|ZP_05935919.1| cold shock protein cspA [Brucella ceti B1/94] gi|261315336|ref|ZP_05954533.1| cold shock protein cspA [Brucella pinnipedialis M163/99/10] gi|261317099|ref|ZP_05956296.1| predicted protein [Brucella pinnipedialis B2/94] gi|261320717|ref|ZP_05959914.1| cold shock protein cspA [Brucella ceti M644/93/1] gi|261324552|ref|ZP_05963749.1| predicted protein [Brucella neotomae 5K33] gi|261751767|ref|ZP_05995476.1| predicted protein [Brucella suis bv. 5 str. 513] gi|261757654|ref|ZP_06001363.1| ATP/GTP-binding site domain-containing protein A [Brucella sp. F5/99] gi|265983577|ref|ZP_06096312.1| cold shock protein cspA [Brucella sp. 83/13] gi|265988135|ref|ZP_06100692.1| cold shock protein cspA [Brucella pinnipedialis M292/94/1] gi|265990551|ref|ZP_06103108.1| cold shock protein cspA [Brucella melitensis bv. 1 str. Rev.1] gi|265994381|ref|ZP_06106938.1| cold shock protein cspA [Brucella melitensis bv. 3 str. Ether] gi|265997600|ref|ZP_06110157.1| cold shock protein cspA [Brucella ceti M490/95/1] gi|294851801|ref|ZP_06792474.1| cold shock protein [Brucella sp. NVSL 07-0026] gi|297247821|ref|ZP_06931539.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv. 5 str. B3196] gi|306839881|ref|ZP_07472679.1| cold shock protein CSPA [Brucella sp. NF 2653] gi|306842293|ref|ZP_07474955.1| cold shock protein CSPA [Brucella sp. BO2] gi|306845051|ref|ZP_07477632.1| cold shock protein CSPA [Brucella sp. BO1] gi|17983518|gb|AAL52691.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M] gi|62195541|gb|AAX73841.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|82615436|emb|CAJ10405.1| ATP/GTP-binding site motif A (P-loop):Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus 2308] gi|189019232|gb|ACD71954.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19] gi|225618586|gb|EEH15629.1| cold shock protein CSPA [Brucella ceti str. Cudo] gi|225640322|gb|ACO00236.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis ATCC 23457] gi|237789731|gb|EEP63941.1| cold shock protein CSPA [Brucella abortus str. 2308 A] gi|255999036|gb|ACU47435.1| cold shock protein CspA [Brucella microti CCM 4915] gi|260097247|gb|EEW81122.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC 8038] gi|260153513|gb|EEW88605.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv. 1 str. 16M] gi|260667737|gb|EEX54677.1| cold shock protein cspA [Brucella abortus bv. 4 str. 292] gi|260671676|gb|EEX58497.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59] gi|260674307|gb|EEX61128.1| cold shock protein cspA [Brucella abortus bv. 6 str. 870] gi|260872752|gb|EEX79821.1| cold shock protein cspA [Brucella abortus bv. 9 str. C68] gi|260915053|gb|EEX81914.1| cold shock protein cspA [Brucella abortus bv. 3 str. Tulya] gi|260920222|gb|EEX86875.1| cold shock protein cspA [Brucella ceti B1/94] gi|260923523|gb|EEX90091.1| predicted protein [Brucella ceti M13/05/1] gi|261293407|gb|EEX96903.1| cold shock protein cspA [Brucella ceti M644/93/1] gi|261296322|gb|EEX99818.1| predicted protein [Brucella pinnipedialis B2/94] gi|261300532|gb|EEY04029.1| predicted protein [Brucella neotomae 5K33] gi|261304362|gb|EEY07859.1| cold shock protein cspA [Brucella pinnipedialis M163/99/10] gi|261737638|gb|EEY25634.1| ATP/GTP-binding site domain-containing protein A [Brucella sp. F5/99] gi|261741520|gb|EEY29446.1| predicted protein [Brucella suis bv. 5 str. 513] gi|262552068|gb|EEZ08058.1| cold shock protein cspA [Brucella ceti M490/95/1] gi|262765494|gb|EEZ11283.1| cold shock protein cspA [Brucella melitensis bv. 3 str. Ether] gi|263001335|gb|EEZ13910.1| cold shock protein cspA [Brucella melitensis bv. 1 str. Rev.1] gi|263094866|gb|EEZ18604.1| predicted protein [Brucella melitensis bv. 2 str. 63/9] gi|264660332|gb|EEZ30593.1| cold shock protein cspA [Brucella pinnipedialis M292/94/1] gi|264662169|gb|EEZ32430.1| cold shock protein cspA [Brucella sp. 83/13] gi|294820390|gb|EFG37389.1| cold shock protein [Brucella sp. NVSL 07-0026] gi|297174990|gb|EFH34337.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv. 5 str. B3196] gi|306274683|gb|EFM56472.1| cold shock protein CSPA [Brucella sp. BO1] gi|306287601|gb|EFM59052.1| cold shock protein CSPA [Brucella sp. BO2] gi|306405067|gb|EFM61348.1| cold shock protein CSPA [Brucella sp. NF 2653] gi|326408455|gb|ADZ65520.1| ATP/GTP-binding site motif A (P-loop) [Brucella melitensis M28] gi|326538172|gb|ADZ86387.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis M5-90] Length = 69 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI P+ + DVF+H SAV AGL +L EGQ V Y+ V + +GK Sbjct: 4 GTVKFFNSTKGFGFIQPD---DGSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRRSGK 60 Query: 65 YSAENLK 71 +A NL+ Sbjct: 61 SAAANLE 67 >gi|296115123|ref|ZP_06833764.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769] gi|295978224|gb|EFG84961.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769] Length = 67 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI P+ + G DVF+H +AV +AGL L E Q V+YD GK Sbjct: 4 GKVKWFNATKGFGFIMPD---DGGKDVFVHITAVQAAGLRGLDENQAVSYDITME--RGK 58 Query: 65 YSAENLK 71 +A NLK Sbjct: 59 AAASNLK 65 >gi|83593249|ref|YP_427001.1| cold-shock DNA-binding protein family protein [Rhodospirillum rubrum ATCC 11170] gi|83576163|gb|ABC22714.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC 11170] Length = 68 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H +A+ AG+ +L EGQ VTYD ++ GK Sbjct: 4 GTVKWFNTTKGFGFIAPD---NGGADAFVHITALERAGIHSLNEGQRVTYD-LEMGRTGK 59 Query: 65 YSAENLKL 72 +A N++L Sbjct: 60 MAAINIRL 67 >gi|26987721|ref|NP_743146.1| cold-shock domain-contain protein [Pseudomonas putida KT2440] gi|24982409|gb|AAN66610.1|AE016288_9 cold-shock domain family protein [Pseudomonas putida KT2440] Length = 165 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 4/56 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFITP ESG D+F+H A+ G +L EGQ VT++ VQ Sbjct: 101 QKGTVKWFNDEKGYGFITP----ESGPDLFVHFRAIEGNGFKSLKEGQQVTFEAVQ 152 >gi|260431448|ref|ZP_05785419.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415276|gb|EEX08535.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 68 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE + G DVF+H S+V +GL L + Q VTY+ ++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPE---DGGKDVFVHISSVERSGLTGLADNQKVTYE-LRAGRDGR 59 Query: 65 YSAENLKLV 73 SA+N++LV Sbjct: 60 ESADNIELV 68 >gi|226311427|ref|YP_002771321.1| cold shock protein [Brevibacillus brevis NBRC 100599] gi|226094375|dbj|BAH42817.1| cold shock protein [Brevibacillus brevis NBRC 100599] Length = 66 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI EG GDDVF+H SA+ S G +L EGQ V ++ VQ + Sbjct: 1 MQQGIVKWFNAEKGYGFIQVEG----GDDVFVHYSAIQSEGFKSLDEGQKVEFEIVQG-S 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAASVTKL 66 >gi|154685002|ref|YP_001420163.1| hypothetical protein RBAM_005400 [Bacillus amyloliquefaciens FZB42] gi|154350853|gb|ABS72932.1| CspC [Bacillus amyloliquefaciens FZB42] Length = 67 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E+GDDVF+H SA+ S G +L EGQ VT+D V+ A Sbjct: 1 MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSDGFKSLDEGQKVTFD-VEQGA 55 Query: 62 NGKYSA 67 G +A Sbjct: 56 RGAQAA 61 >gi|149202227|ref|ZP_01879200.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035] gi|149144325|gb|EDM32356.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035] Length = 68 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+G G DVF+H SAV AGL L + Q V +D ++ +G+ Sbjct: 4 GTVKWFNATKGYGFIAPDG---GGKDVFVHISAVERAGLTGLADNQKVKFD-IEAGRDGR 59 Query: 65 YSAENLKL 72 SA N+ L Sbjct: 60 ESASNIVL 67 >gi|114767284|ref|ZP_01446124.1| cold shock family protein [Pelagibaca bermudensis HTCC2601] gi|114540590|gb|EAU43663.1| cold shock family protein [Roseovarius sp. HTCC2601] Length = 68 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V+YD ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYD-LKEGRDGR 59 Query: 65 YSAENLK 71 A +LK Sbjct: 60 MMASDLK 66 >gi|311066997|ref|YP_003971920.1| cold-shock protein [Bacillus atrophaeus 1942] gi|310867514|gb|ADP30989.1| cold-shock protein [Bacillus atrophaeus 1942] Length = 67 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E+GDDVF+H SA+ S G +L EGQ VT+D V+ A Sbjct: 1 MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSDGFKSLDEGQKVTFD-VEQGA 55 Query: 62 NGKYSA 67 G +A Sbjct: 56 RGAQAA 61 >gi|315498412|ref|YP_004087216.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] gi|315416424|gb|ADU13065.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] Length = 67 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P E G+DVF+H +AV AGL L +GQ ++Y+ GK Sbjct: 4 GTVKWFNATKGFGFIQP---AEGGNDVFVHITAVQRAGLQGLADGQKLSYEL--QTERGK 58 Query: 65 YSAENLKLV 73 +A NL+L+ Sbjct: 59 TAAVNLQLL 67 >gi|145593188|ref|YP_001157485.1| cold-shock DNA-binding domain-containing protein [Salinispora tropica CNB-440] gi|145302525|gb|ABP53107.1| cold-shock DNA-binding protein family [Salinispora tropica CNB-440] Length = 67 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFITP+G G DVF H SA+A++G +L E Q V +D Q + Sbjct: 4 GTVKWFNADKGFGFITPDG---GGADVFAHFSAIATSGFRSLDENQKVEFDITQGQKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENIR 65 >gi|308172349|ref|YP_003919054.1| cold-shock protein [Bacillus amyloliquefaciens DSM 7] gi|307605213|emb|CBI41584.1| cold-shock protein [Bacillus amyloliquefaciens DSM 7] gi|328552171|gb|AEB22663.1| cold-shock protein [Bacillus amyloliquefaciens TA208] gi|328910438|gb|AEB62034.1| cold-shock protein [Bacillus amyloliquefaciens LL3] Length = 66 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E+GDDVF+H SA+ S G +L EGQ VT+D V+ A Sbjct: 1 MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSDGFKSLDEGQKVTFD-VEQGA 55 Query: 62 NGKYSA 67 G +A Sbjct: 56 RGAQAA 61 >gi|116249427|ref|YP_765268.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|241113498|ref|YP_002973333.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115254077|emb|CAK12474.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|240861706|gb|ACS59372.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 67 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKG+GFITPEG G DVF+H SA+ S G +L EG V+++ Q+ GK Sbjct: 4 GTVKFFNDDKGFGFITPEG---GGQDVFVHVSALQSGG--SLREGDKVSFEVGQDRKTGK 58 Query: 65 YSAENL 70 AEN+ Sbjct: 59 SKAENV 64 >gi|227515455|ref|ZP_03945504.1| CspA family cold shock transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227086169|gb|EEI21481.1| CspA family cold shock transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|299783543|gb|ADJ41541.1| CspA family cold shock transcriptional regulator [Lactobacillus fermentum CECT 5716] Length = 66 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G+IKW+N +KGYGFI S E+GDDVF+H SA+ G L EGQ VT+D V+N Sbjct: 1 MEQGTIKWFNDEKGYGFI----SREAGDDVFVHFSAIQGDGFKTLEEGQSVTFD-VENGD 55 Query: 62 NGKYSA 67 G +A Sbjct: 56 RGLQAA 61 >gi|21957922|gb|AAM84743.1|AE013720_7 cold shock protein [Yersinia pestis KIM 10] gi|45435809|gb|AAS61366.1| putative cold shock protein [Yersinia pestis biovar Microtus str. 91001] Length = 84 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ + N A G Sbjct: 20 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFE-ITNGAKG 75 Query: 64 KYSAENLKL 72 +A + + Sbjct: 76 PSAANVIAI 84 >gi|83950568|ref|ZP_00959301.1| cold shock family protein [Roseovarius nubinhibens ISM] gi|83838467|gb|EAP77763.1| cold shock family protein [Roseovarius nubinhibens ISM] Length = 68 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H SAV AGL L + Q VTYD ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPD---DGGKDVFVHISAVERAGLTGLADNQKVTYD-LEAGRDGR 59 Query: 65 YSAENLKL 72 SA N+ L Sbjct: 60 ESAGNIVL 67 >gi|254438790|ref|ZP_05052284.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter antarcticus 307] gi|198254236|gb|EDY78550.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter antarcticus 307] Length = 68 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE G DVF+H SAV +GL L + Q VT+D V+ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPE---TGGKDVFVHISAVERSGLTGLADDQKVTFD-VEAGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESAVNLAL 67 >gi|332559893|ref|ZP_08414215.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N] gi|332277605|gb|EGJ22920.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N] Length = 68 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+++W+N KG+GF+ P ++ DVF+H +A+ AG+ L +GQ +TYD ++ D NG+ Sbjct: 4 GTVQWFNATKGFGFVAPAHGSK---DVFVHVTALERAGIHQLNDGQALTYD-METDRNGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESATNLVL 67 >gi|160937355|ref|ZP_02084716.1| hypothetical protein CLOBOL_02246 [Clostridium bolteae ATCC BAA-613] gi|158439424|gb|EDP17174.1| hypothetical protein CLOBOL_02246 [Clostridium bolteae ATCC BAA-613] Length = 72 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 3/55 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +++G++KW+N KGYGFIT E E+G D+F+H S +AS G +L EGQ VT+D Sbjct: 5 FMNKGTVKWFNSQKGYGFITNE---ENGMDIFVHFSGIASNGFKSLEEGQAVTFD 56 >gi|116252711|ref|YP_768549.1| cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841] gi|190892268|ref|YP_001978810.1| cold shock protein [Rhizobium etli CIAT 652] gi|209549797|ref|YP_002281714.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|218463687|ref|ZP_03503778.1| cold-shock DNA-binding domain protein [Rhizobium etli Kim 5] gi|218510076|ref|ZP_03507954.1| cold-shock DNA-binding domain protein [Rhizobium etli Brasil 5] gi|218660216|ref|ZP_03516146.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771] gi|218674774|ref|ZP_03524443.1| cold-shock DNA-binding domain protein [Rhizobium etli GR56] gi|241205217|ref|YP_002976313.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115257359|emb|CAK08454.1| putative cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841] gi|190697547|gb|ACE91632.1| cold shock protein [Rhizobium etli CIAT 652] gi|209535553|gb|ACI55488.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240859107|gb|ACS56774.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|327192667|gb|EGE59605.1| cold shock protein CspA [Rhizobium etli CNPAF512] Length = 70 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 46/64 (71%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++K++N DKG+GFITP+G + DVF+H SA+ ++G+ +L EGQ VT+D + D Sbjct: 1 MATKGTVKFFNQDKGFGFITPDGGAK---DVFVHISALQASGIQSLREGQQVTFD-TEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 RMGK 60 >gi|126729016|ref|ZP_01744831.1| cold shock family protein [Sagittula stellata E-37] gi|126710946|gb|EBA09997.1| cold shock family protein [Sagittula stellata E-37] Length = 68 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V+Y+ ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYE-LREGRDGR 59 Query: 65 YSAENLKLV 73 A +LK++ Sbjct: 60 TMASDLKVI 68 >gi|311029190|ref|ZP_07707280.1| cold-shock protein [Bacillus sp. m3-13] Length = 67 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N +KG+GFI E+GDDVF+H SA+ S G +L EGQ VT+D Q Sbjct: 1 MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSEGFKSLDEGQKVTFDVEQ 53 >gi|294677982|ref|YP_003578597.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003] gi|294476802|gb|ADE86190.1| cold shock protein CspA-2 [Rhodobacter capsulatus SB 1003] Length = 68 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+G G DVF+H SAV AGL L++ Q ++++ + +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPDG---GGKDVFVHISAVERAGLKALSDNQKISFELISG-RDGR 59 Query: 65 YSAENLKLV 73 SA +LKL+ Sbjct: 60 SSAGDLKLL 68 >gi|86358177|ref|YP_470069.1| cold shock protein [Rhizobium etli CFN 42] gi|86282279|gb|ABC91342.1| cold shock protein [Rhizobium etli CFN 42] Length = 70 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 46/64 (71%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++K++N DKG+GFITP+G + DVF+H SA+ ++G+ +L EGQ VT+D + D Sbjct: 1 MATKGTVKFFNQDKGFGFITPDGGAK---DVFVHISALQASGIQSLREGQQVTFD-TEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 RMGK 60 >gi|184156018|ref|YP_001844358.1| cold shock protein [Lactobacillus fermentum IFO 3956] gi|260662726|ref|ZP_05863620.1| cold shock protein [Lactobacillus fermentum 28-3-CHN] gi|183227362|dbj|BAG27878.1| cold shock protein [Lactobacillus fermentum IFO 3956] gi|260552807|gb|EEX25806.1| cold shock protein [Lactobacillus fermentum 28-3-CHN] Length = 66 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G+IKW+N +KGYGFI S E+GDDVF+H SA+ G L EGQ VT+D D Sbjct: 1 MEKGTIKWFNDEKGYGFI----SREAGDDVFVHFSAIQGDGFKTLEEGQSVTFDVETGD 55 >gi|187479893|ref|YP_787918.1| cold shock protein [Bordetella avium 197N] gi|115424480|emb|CAJ51034.1| cold shock protein [Bordetella avium 197N] Length = 68 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V +D V++ Sbjct: 1 MAQKGKVKWFNADKGYGFITPD---SGGTDVFAHFSAIQGRGYRSLNEGQEVEFD-VKDG 56 Query: 61 ANGKYSAE 68 G +AE Sbjct: 57 PKGPQAAE 64 >gi|209542291|ref|YP_002274520.1| cold-shock DNA-binding domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209529968|gb|ACI49905.1| cold-shock DNA-binding domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 204 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 RG +KWYN KG+GFITPE G D+F+H SA+ +GL LTEGQ VQ Sbjct: 140 RGVVKWYNATKGFGFITPE---SGGKDIFVHASALERSGLTGLTEGQTANVQVVQG 192 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 ++KW+N +KG+GF+ E S SG DVFLH +A+A++G +++ G + Q Sbjct: 37 AVKWFNSEKGFGFV--ELSDGSG-DVFLHANALATSGHDSVSPGTTLVVRIGQG 87 >gi|253579494|ref|ZP_04856763.1| cold-shock protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848995|gb|EES76956.1| cold-shock protein [Ruminococcus sp. 5_1_39BFAA] Length = 66 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ VTYD + A Sbjct: 1 MNKGTVKWFNAEKGYGFITGE----DGADVFVHFSAINGEGFKSLEEGQAVTYDLTEG-A 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGMQAANVTKL 66 >gi|126733685|ref|ZP_01749432.1| cold shock protein CspA-related protein, putative [Roseobacter sp. CCS2] gi|126716551|gb|EBA13415.1| cold shock protein CspA-related protein, putative [Roseobacter sp. CCS2] Length = 68 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G ++ DVF+H SAV +GL L + Q VT+D V+ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERSGLTGLQDDQKVTFD-VEAGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESAVNLAL 67 >gi|86140176|ref|ZP_01058738.1| cold shock family protein [Roseobacter sp. MED193] gi|85823113|gb|EAQ43326.1| cold shock family protein [Roseobacter sp. MED193] Length = 68 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G ++ DVF+H SAV +GL L + Q VT+D ++ +G+ Sbjct: 4 GTVKWFNSTKGFGFIAPDGGSK---DVFVHISAVERSGLTGLADNQKVTFD-IEPGRDGR 59 Query: 65 YSAENLKL 72 SA NL+L Sbjct: 60 ESAVNLEL 67 >gi|323702916|ref|ZP_08114574.1| cold-shock DNA-binding domain protein [Desulfotomaculum nigrificans DSM 574] gi|323532174|gb|EGB22055.1| cold-shock DNA-binding domain protein [Desulfotomaculum nigrificans DSM 574] Length = 65 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI E+G DVF+H SA+ + G L EGQLV +D V+ A G Sbjct: 2 QGKVKWFNANKGYGFI----EAETGSDVFVHYSAIQAEGYRTLEEGQLVQFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|15965657|ref|NP_386010.1| putative cold shock-like transcription regulator protein [Sinorhizobium meliloti 1021] gi|150396829|ref|YP_001327296.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|307315974|ref|ZP_07595463.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307321238|ref|ZP_07600640.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|15074838|emb|CAC46483.1| Cold shock protein [Sinorhizobium meliloti 1021] gi|150028344|gb|ABR60461.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] gi|306893140|gb|EFN23924.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306898377|gb|EFN29075.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 70 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +K++N DKG+GFITPEG ++ DVF+H +AV +AGL L +GQ V++D + D Sbjct: 1 MATKGIVKFFNQDKGFGFITPEGGSK---DVFVHITAVQAAGLTTLNDGQEVSFD-TEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 RMGK 60 >gi|313497351|gb|ADR58717.1| Cold-shock domain-containing protein [Pseudomonas putida BIRD-1] Length = 69 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 4/56 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFITP ESG D+F+H A+ G +L EGQ VT++ VQ Sbjct: 5 QKGTVKWFNDEKGYGFITP----ESGPDLFVHFRAIEGNGFKSLKEGQQVTFEAVQ 56 >gi|254454339|ref|ZP_05067776.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus 238] gi|198268745|gb|EDY93015.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus 238] Length = 152 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE G DVF+H SAV +GL L + Q VT+D V+ +G+ Sbjct: 88 GTVKWFNTTKGFGFIAPE---TGGKDVFVHISAVERSGLTGLADDQKVTFD-VEAGRDGR 143 Query: 65 YSAENLKL 72 SA NL L Sbjct: 144 ESAVNLAL 151 >gi|197106500|ref|YP_002131877.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] gi|196479920|gb|ACG79448.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] Length = 69 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP KG+GFI P+ G DVF+H SAV + L +L+EGQ V ++ ++ +GK Sbjct: 4 GTVKWFNPAKGFGFIQPD---NGGPDVFVHISAVERSTLGSLSEGQKVGFELERDQRSGK 60 Query: 65 YSAENLK 71 SA L+ Sbjct: 61 TSAGQLQ 67 >gi|51595435|ref|YP_069626.1| cold shock protein CspE [Yersinia pseudotuberculosis IP 32953] gi|108808497|ref|YP_652413.1| cold shock protein CspE [Yersinia pestis Antiqua] gi|145599922|ref|YP_001163998.1| cold shock protein CspE [Yersinia pestis Pestoides F] gi|149365504|ref|ZP_01887539.1| putative cold shock protein [Yersinia pestis CA88-4125] gi|153947984|ref|YP_001401920.1| cold shock protein CspE [Yersinia pseudotuberculosis IP 31758] gi|161484846|ref|NP_668492.2| cold shock protein CspE [Yersinia pestis KIM 10] gi|161511416|ref|NP_992489.2| cold shock protein CspE [Yersinia pestis biovar Microtus str. 91001] gi|162418633|ref|YP_001606345.1| cold shock protein CspE [Yersinia pestis Angola] gi|165925190|ref|ZP_02221022.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165937609|ref|ZP_02226171.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008509|ref|ZP_02229407.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212360|ref|ZP_02238395.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167398559|ref|ZP_02304083.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422542|ref|ZP_02314295.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423259|ref|ZP_02315012.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025252|ref|YP_001721757.1| cold shock protein CspE [Yersinia pseudotuberculosis YPIII] gi|186894465|ref|YP_001871577.1| cold shock protein CspE [Yersinia pseudotuberculosis PB1/+] gi|218929676|ref|YP_002347551.1| cold shock protein CspE [Yersinia pestis CO92] gi|229838141|ref|ZP_04458300.1| DNA-binding transcriptional repressor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895932|ref|ZP_04511102.1| DNA-binding transcriptional repressor [Yersinia pestis Pestoides A] gi|229898749|ref|ZP_04513894.1| DNA-binding transcriptional repressor [Yersinia pestis biovar Orientalis str. India 195] gi|229901480|ref|ZP_04516602.1| DNA-binding transcriptional repressor [Yersinia pestis Nepal516] gi|238755048|ref|ZP_04616396.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473] gi|238758047|ref|ZP_04619228.1| hypothetical protein yaldo0001_9270 [Yersinia aldovae ATCC 35236] gi|238762891|ref|ZP_04623859.1| Cold shock-like protein cspE [Yersinia kristensenii ATCC 33638] gi|238785727|ref|ZP_04629701.1| Cold shock-like protein cspE [Yersinia bercovieri ATCC 43970] gi|238791629|ref|ZP_04635267.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909] gi|238795419|ref|ZP_04638934.1| Cold shock-like protein cspE [Yersinia mollaretii ATCC 43969] gi|270263689|ref|ZP_06191958.1| Cold shock-like protein CspE [Serratia odorifera 4Rx13] gi|270489665|ref|ZP_06206739.1| cold shock protein CspE [Yersinia pestis KIM D27] gi|284988376|ref|YP_003422335.1| cold shock protein [Yersinia pestis Nepal516] gi|293392426|ref|ZP_06636748.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] gi|51588717|emb|CAH20328.1| putative cold shock protein [Yersinia pseudotuberculosis IP 32953] gi|108780410|gb|ABG14468.1| cold shock protein E (CspE) [Yersinia pestis Antiqua] gi|115348287|emb|CAL21218.1| putative cold shock protein [Yersinia pestis CO92] gi|145211618|gb|ABP41025.1| cold shock protein E (CspE) [Yersinia pestis Pestoides F] gi|149291917|gb|EDM41991.1| putative cold shock protein [Yersinia pestis CA88-4125] gi|152959479|gb|ABS46940.1| cold shock DNA-binding domain protein [Yersinia pseudotuberculosis IP 31758] gi|162351448|gb|ABX85396.1| cold shock DNA-binding domain protein [Yersinia pestis Angola] gi|165914359|gb|EDR32974.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922797|gb|EDR39948.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992891|gb|EDR45192.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206291|gb|EDR50771.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166958556|gb|EDR55577.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051063|gb|EDR62471.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057429|gb|EDR67175.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751786|gb|ACA69304.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186697491|gb|ACC88120.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|229681409|gb|EEO77503.1| DNA-binding transcriptional repressor [Yersinia pestis Nepal516] gi|229688297|gb|EEO80368.1| DNA-binding transcriptional repressor [Yersinia pestis biovar Orientalis str. India 195] gi|229694507|gb|EEO84554.1| DNA-binding transcriptional repressor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700855|gb|EEO88884.1| DNA-binding transcriptional repressor [Yersinia pestis Pestoides A] gi|238698902|gb|EEP91651.1| Cold shock-like protein cspE [Yersinia kristensenii ATCC 33638] gi|238703801|gb|EEP96337.1| hypothetical protein yaldo0001_9270 [Yersinia aldovae ATCC 35236] gi|238706752|gb|EEP99121.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473] gi|238713367|gb|EEQ05405.1| Cold shock-like protein cspE [Yersinia bercovieri ATCC 43970] gi|238720538|gb|EEQ12339.1| Cold shock-like protein cspE [Yersinia mollaretii ATCC 43969] gi|238729245|gb|EEQ20761.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909] gi|270042573|gb|EFA15668.1| Cold shock-like protein CspE [Serratia odorifera 4Rx13] gi|270338169|gb|EFA48946.1| cold shock protein CspE [Yersinia pestis KIM D27] gi|291425080|gb|EFE98287.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] Length = 69 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ + N A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFE-ITNGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|295696558|ref|YP_003589796.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] gi|295412160|gb|ADG06652.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] Length = 66 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFITP+ + G DVF+H SA+ G L EGQ V YD V+ G Sbjct: 2 KGKVKWFNAEKGYGFITPD---DGGKDVFVHYSAIQEEGFRTLEEGQDVEYDIVEG-PRG 57 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 58 PQAANVVKL 66 >gi|163744665|ref|ZP_02152025.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45] gi|161381483|gb|EDQ05892.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45] Length = 68 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D+F+H SAV AGL L + Q VT+D V+ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPD---TGGKDIFVHISAVERAGLTGLADNQKVTFD-VEAGRDGR 59 Query: 65 YSAENLKL 72 SA N+ L Sbjct: 60 ESASNIAL 67 >gi|251799709|ref|YP_003014440.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] gi|247547335|gb|ACT04354.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] Length = 65 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI TE G DVF+H SA+ + G L EGQ V +D V+ A G Sbjct: 2 QGKVKWFNAEKGYGFI----ETEQGGDVFVHFSAIQAEGFKTLEEGQAVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|219881898|gb|ACL52164.1| cold response protein 1 [Metarhizium anisopliae] gi|322693450|gb|EFY85310.1| cold response protein 1 [Metarhizium acridum CQMa 102] gi|322707280|gb|EFY98859.1| cold response protein 1 [Metarhizium anisopliae ARSEF 23] Length = 70 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KGYGFITP ESG D+F+H A+ +G +L EGQ VT++ VQ Sbjct: 7 GVVKWFNEEKGYGFITP----ESGPDLFVHFRAIEGSGFRSLKEGQAVTFEAVQ 56 >gi|58039299|ref|YP_191263.1| cold shock protein [Gluconobacter oxydans 621H] gi|58001713|gb|AAW60607.1| Cold shock protein [Gluconobacter oxydans 621H] Length = 68 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S++ DVF+H SA+ AGL NL EGQ V+Y+ +++ NG+ Sbjct: 4 GTVKWFNATKGFGFIQ---SSDGTTDVFVHISALEKAGLQNLNEGQQVSYE-IEDGRNGR 59 Query: 65 YSAENLK 71 SA +LK Sbjct: 60 KSAGSLK 66 >gi|134297915|ref|YP_001111411.1| cold-shock DNA-binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134050615|gb|ABO48586.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens MI-1] Length = 66 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI TE G DVF+H SA+ G L EGQ V+++ VQ + Sbjct: 1 MQKGTVKWFNAEKGYGFI----ETEEGSDVFVHFSAITGDGFKTLEEGQRVSFNVVQGN- 55 Query: 62 NGKYSAENLKL 72 G + E +KL Sbjct: 56 RGPQAEEVVKL 66 >gi|299134245|ref|ZP_07027438.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] gi|298590992|gb|EFI51194.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] Length = 71 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N ++GYGFI P+ + G DVF+H +AV AGL NLTEGQ +T++ V+ D Sbjct: 1 MAMTGVVKFFNAERGYGFIKPD---DGGRDVFVHITAVEKAGLKNLTEGQHITFE-VEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KKGK 60 >gi|169334115|ref|ZP_02861308.1| hypothetical protein ANASTE_00508 [Anaerofustis stercorihominis DSM 17244] gi|169258832|gb|EDS72798.1| hypothetical protein ANASTE_00508 [Anaerofustis stercorihominis DSM 17244] Length = 70 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 4/63 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KGYGFI+ + E+G+DVF+H SA++ G +L EGQ VTYD V+ D Sbjct: 1 MNNGTVKWFNQEKGYGFISND---ETGEDVFVHYSAISGEGFKSLNEGQKVTYD-VEADT 56 Query: 62 NGK 64 K Sbjct: 57 KNK 59 >gi|116249765|ref|YP_765603.1| putative cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841] gi|115254413|emb|CAK04052.1| putative cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841] Length = 68 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KG GFI P+ + DVF+H SAV AG L +GQ + Y+ V++ +GK Sbjct: 4 GTVKWFDATKGSGFIQPD---DGSIDVFVHISAVERAGRLGLNDGQKIAYELVKDRMSGK 60 Query: 65 YSAENLK 71 SA+NL+ Sbjct: 61 MSADNLQ 67 >gi|116511521|ref|YP_808737.1| cold-shock DNA-binding protein family protein [Lactococcus lactis subsp. cremoris SK11] gi|125624635|ref|YP_001033118.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris MG1363] gi|2370256|emb|CAA71254.1| cold shock protein [Lactococcus lactis] gi|3850773|emb|CAA76695.1| cold shock protein B [Lactococcus lactis subsp. cremoris MG1363] gi|116107175|gb|ABJ72315.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp. cremoris SK11] gi|124493443|emb|CAL98417.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris MG1363] gi|300071426|gb|ADJ60826.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris NZ9000] Length = 66 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/52 (51%), Positives = 37/52 (71%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+NPDKG+GFIT +E G DVF H S + ++G L EGQ VT+D Sbjct: 3 KGTVKWFNPDKGFGFIT----SEDGQDVFAHFSQIQTSGFKTLDEGQKVTFD 50 >gi|162149571|ref|YP_001604032.1| cold shock protein [Gluconacetobacter diazotrophicus PAl 5] gi|209544805|ref|YP_002277034.1| cold-shock DNA-binding domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|148530010|gb|ABQ82211.1| cold shock protein [Gluconacetobacter diazotrophicus PAl 5] gi|161788148|emb|CAP57753.1| putative cold shock protein [Gluconacetobacter diazotrophicus PAl 5] gi|209532482|gb|ACI52419.1| cold-shock DNA-binding domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 68 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P + DVF+H SAV AGL L EGQ ++Y+ ++ N K Sbjct: 4 GTVKWFNSQKGFGFIQP---NDGSSDVFVHISAVERAGLRGLNEGQTISYE-LETGRNNK 59 Query: 65 YSAENLK 71 SA NLK Sbjct: 60 TSAVNLK 66 >gi|302871348|ref|YP_003839984.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor obsidiansis OB47] gi|312128141|ref|YP_003993015.1| cold-shock DNA-binding domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|312134639|ref|YP_004001977.1| cold-shock DNA-binding domain-containing protein [Caldicellulosiruptor owensensis OL] gi|312622949|ref|YP_004024562.1| cold-shock DNA-binding domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312794129|ref|YP_004027052.1| cold-shock DNA-binding domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|302574207|gb|ADL41998.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor obsidiansis OB47] gi|311774690|gb|ADQ04177.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor owensensis OL] gi|311778160|gb|ADQ07646.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor hydrothermalis 108] gi|312181269|gb|ADQ41439.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312203416|gb|ADQ46743.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 66 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+NP+KGYGFI S ++G+DVF+H SA+ G L EGQ V +D V+ + Sbjct: 2 RGRVKWFNPEKGYGFI----SADNGEDVFVHFSAINMEGYKTLAEGQTVEFDIVKTE 54 >gi|162147665|ref|YP_001602126.1| cold shock-like protein cspE [Gluconacetobacter diazotrophicus PAl 5] gi|161786242|emb|CAP55824.1| Cold shock-like protein cspE [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 RG +KWYN KG+GFITPE G D+F+H SA+ +GL LTEGQ VQ Sbjct: 162 RGVVKWYNATKGFGFITPE---SGGKDIFVHASALERSGLTGLTEGQTANVQVVQG 214 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 ++KW+N +KG+GF+ E S SG DVFLH +A+A++G +++ G + Q Sbjct: 59 AVKWFNSEKGFGFV--ELSDGSG-DVFLHANALATSGHDSVSPGTTLVVRIGQG 109 >gi|326388755|ref|ZP_08210344.1| cold-shock DNA-binding domain protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206779|gb|EGD57607.1| cold-shock DNA-binding domain protein [Novosphingobium nitrogenifigens DSM 19370] Length = 68 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKGYGFI PE G+D F+H SAV AG+ L++ Q ++Y+ V+ D GK Sbjct: 4 GTVKFFNTDKGYGFIAPE---NGGNDSFVHFSAVQQAGMATLSKDQRLSYE-VETDRRGK 59 Query: 65 YSAENL 70 SA NL Sbjct: 60 QSAINL 65 >gi|294498464|ref|YP_003562164.1| cold shock protein [Bacillus megaterium QM B1551] gi|294500157|ref|YP_003563857.1| cold shock protein [Bacillus megaterium QM B1551] gi|295705519|ref|YP_003598594.1| cold shock protein [Bacillus megaterium DSM 319] gi|294348401|gb|ADE68730.1| cold shock protein [Bacillus megaterium QM B1551] gi|294350094|gb|ADE70423.1| cold shock protein [Bacillus megaterium QM B1551] gi|294803178|gb|ADF40244.1| cold shock protein [Bacillus megaterium DSM 319] Length = 67 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N DKG+GFI EG GDDVF+H S++ G +L EGQ VT+D Q Sbjct: 1 MEQGTVKWFNADKGFGFIEIEG----GDDVFVHFSSIQGEGFKSLEEGQKVTFDIEQ 53 >gi|222528760|ref|YP_002572642.1| cold-shock DNA-binding domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222455607|gb|ACM59869.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 66 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+NP+KGYGFI S ++G+DVF+H SA+ G L EGQ V +D V+ + Sbjct: 2 RGKVKWFNPEKGYGFI----SADNGEDVFVHFSAINMEGYKTLAEGQTVEFDIVKTE 54 >gi|227822300|ref|YP_002826271.1| putative cold shock protein CspA [Sinorhizobium fredii NGR234] gi|227341300|gb|ACP25518.1| putative cold shock protein CspA [Sinorhizobium fredii NGR234] Length = 70 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 3/55 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M +G +K++N DKG+GFITP+G + DVF+H SAV +AGL L +GQ V++D Sbjct: 1 MATKGIVKFFNQDKGFGFITPDGGAK---DVFVHISAVQAAGLATLKDGQQVSFD 52 >gi|56695352|ref|YP_165700.1| cold shock family protein [Ruegeria pomeroyi DSS-3] gi|56677089|gb|AAV93755.1| cold shock family protein [Ruegeria pomeroyi DSS-3] Length = 68 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE E G DVF+H SAV +GL L + Q V+Y+ ++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYE-LKPGRDGR 59 Query: 65 YSAENLKLV 73 SA +LKL+ Sbjct: 60 ESAVDLKLL 68 >gi|294500155|ref|YP_003563855.1| cold shock protein [Bacillus megaterium QM B1551] gi|295705517|ref|YP_003598592.1| cold shock protein [Bacillus megaterium DSM 319] gi|294350092|gb|ADE70421.1| cold shock protein [Bacillus megaterium QM B1551] gi|294803176|gb|ADF40242.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N +KG+GFI E+GDDVF+H SA+ S G +L EGQ VT+D Q Sbjct: 1 MEQGKVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSEGFKSLDEGQAVTFDVEQ 53 >gi|294499467|ref|YP_003563167.1| cold shock protein [Bacillus megaterium QM B1551] gi|295704817|ref|YP_003597892.1| cold shock protein [Bacillus megaterium DSM 319] gi|294349404|gb|ADE69733.1| cold shock protein [Bacillus megaterium QM B1551] gi|294802476|gb|ADF39542.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +KG+GFI E+GDDVF+H SA+ S G +L EGQ VT+D Sbjct: 1 MEKGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSEGFKSLDEGQAVTFD 50 >gi|84499705|ref|ZP_00997993.1| cold shock protein CspA [Oceanicola batsensis HTCC2597] gi|84392849|gb|EAQ05060.1| cold shock protein CspA [Oceanicola batsensis HTCC2597] Length = 68 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P + D+F+H SA+ AGL L +GQ VT+D +++ +G+ Sbjct: 4 GTVKWFNSTKGFGFIEP---ADGKKDIFVHISALERAGLSELKDGQAVTFD-IEDGRDGR 59 Query: 65 YSAENLKLV 73 SA NL L Sbjct: 60 SSAANLALA 68 >gi|148546265|ref|YP_001266367.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida F1] gi|148510323|gb|ABQ77183.1| cold-shock DNA-binding protein family [Pseudomonas putida F1] Length = 69 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFITP ESG D+F+H A+ +G +L EGQ VT++ VQ Sbjct: 7 GTVKWFNDEKGYGFITP----ESGPDLFVHFRAIEGSGFKSLKEGQKVTFEAVQ 56 >gi|209886327|ref|YP_002290184.1| putative cold-shock' DNA-binding domain [Oligotropha carboxidovorans OM5] gi|209874523|gb|ACI94319.1| putative cold-shock' DNA-binding domain [Oligotropha carboxidovorans OM5] Length = 71 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL NL EGQ +T++ V+ D Sbjct: 1 MAMTGTVKFFNAERGYGFIKPD---DGGRDVFVHITAVERAGLKNLVEGQQITFE-VEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KKGK 60 >gi|304385436|ref|ZP_07367781.1| cold shock protein CspA [Pediococcus acidilactici DSM 20284] gi|304328643|gb|EFL95864.1| cold shock protein CspA [Pediococcus acidilactici DSM 20284] Length = 69 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 4/60 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ +G++KW+N DKG+GFIT E G DVF+H SA+ S G L EGQ V++D ++D Sbjct: 3 IMEQGTVKWFNADKGFGFIT----REDGSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESD 58 >gi|220932483|ref|YP_002509391.1| putative cold-shock DNA-binding domain protein [Halothermothrix orenii H 168] gi|219993793|gb|ACL70396.1| putative cold-shock DNA-binding domain protein [Halothermothrix orenii H 168] Length = 67 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M++ G +KW++P KGYGFI + GDDVF+H SA+ G L EGQ V ++ V+++ Sbjct: 1 MIYSGKVKWFDPKKGYGFI----ERDEGDDVFVHFSAIKEEGFKTLEEGQEVEFEIVESE 56 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 57 -RGPQAANVVKL 67 >gi|153813260|ref|ZP_01965928.1| hypothetical protein RUMOBE_03677 [Ruminococcus obeum ATCC 29174] gi|149830673|gb|EDM85764.1| hypothetical protein RUMOBE_03677 [Ruminococcus obeum ATCC 29174] gi|295108549|emb|CBL22502.1| cold-shock DNA-binding protein family [Ruminococcus obeum A2-162] Length = 66 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ VTYD + A Sbjct: 1 MNKGTVKWFNAEKGYGFITGE----DGADVFVHFSAINGEGFKSLDEGQAVTYDLTEG-A 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGMQAANVTKL 66 >gi|193875878|gb|ACF24575.1| glycine-rich nucleic acid binding protein [Gymnochlora stellata] Length = 290 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+ KW+N KGYGFI P+ E DD+F+H++A+ + G +L EG+ V +D V+ DA G+ Sbjct: 26 GTCKWFNTVKGYGFILPQ---EGKDDIFVHQTAIKAVGFRSLAEGEQVEFD-VEVDATGR 81 Query: 65 YSAENL 70 A N+ Sbjct: 82 KKARNV 87 >gi|56698445|ref|YP_168819.1| cold shock protein CspA [Ruegeria pomeroyi DSS-3] gi|56680182|gb|AAV96848.1| cold shock protein CspA [Ruegeria pomeroyi DSS-3] Length = 68 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE + DVF+H SA+ +G+ L +GQ VT+D +++ +G+ Sbjct: 4 GTVKWFNSQKGFGFIAPE---QGSKDVFVHISALERSGIQKLDDGQAVTFD-IESGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESAINLAL 67 >gi|15966083|ref|NP_386436.1| putative cold shock transcription regulator protein [Sinorhizobium meliloti 1021] gi|150397438|ref|YP_001327905.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|307305637|ref|ZP_07585384.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307317640|ref|ZP_07597079.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|15075353|emb|CAC46909.1| Putative cold shock transcription regulator [Sinorhizobium meliloti 1021] gi|150028953|gb|ABR61070.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] gi|306896798|gb|EFN27545.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306902340|gb|EFN32936.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 71 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 5/74 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI PE G D+F+H SAV ++GL LTE Q V++D + D Sbjct: 1 MAETGTVKFFNTDKGFGFIKPE---NGGADIFVHISAVQASGLSGLTENQKVSFD-TEPD 56 Query: 61 ANGK-YSAENLKLV 73 GK A NL++V Sbjct: 57 RRGKGPKAVNLQIV 70 >gi|328957164|ref|YP_004374550.1| cold-shock protein [Carnobacterium sp. 17-4] gi|328673488|gb|AEB29534.1| cold-shock protein [Carnobacterium sp. 17-4] Length = 66 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +KG+GFI EG+ DDVF+H SA+ S G +L EGQ VT+D Sbjct: 1 MEQGTVKWFNAEKGFGFIEREGA----DDVFVHFSAIQSEGFKSLEEGQAVTFD 50 >gi|126724626|ref|ZP_01740469.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2150] gi|126705790|gb|EBA04880.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2150] Length = 68 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ G+DVF+H SAV AGL L + Q VTY+ ++ +GK Sbjct: 4 GTVKWFNSTKGYGFIAPDAG---GNDVFVHISAVERAGLTGLKDNQKVTYE-LETGRDGK 59 Query: 65 YSAENLKLV 73 SA +L L Sbjct: 60 QSAGDLALA 68 >gi|317127375|ref|YP_004093657.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472323|gb|ADU28926.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] Length = 66 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N +KG+GFI EG GDDVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MQQGTVKWFNAEKGFGFIEVEG----GDDVFVHFSAIQGEGFKSLDEGQAVTFDVEQ 53 >gi|157369432|ref|YP_001477421.1| cold shock protein CspE [Serratia proteamaculans 568] gi|157321196|gb|ABV40293.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] Length = 69 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +GS+KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ Q Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFEITQ 56 >gi|300769133|ref|ZP_07079022.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493373|gb|EFK28552.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 88 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 4/60 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N DKG+GFIT E G DVF+H SA+ + G L EGQ VTYD Q D Sbjct: 22 IMKNGTVKWFNADKGFGFITGE----DGTDVFVHFSAIQTDGFKTLDEGQKVTYDEEQGD 77 >gi|238898407|ref|YP_002924088.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466166|gb|ACQ67940.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 72 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +GS+KW+N KG+GFITP + DVF+H SA+ S+G L EGQ+V + ++N A Sbjct: 6 QKGSVKWFNESKGFGFITP---ADGSKDVFVHFSAIDSSGFKTLGEGQMVEFS-IENGAK 61 Query: 63 GKYSAENLKLV 73 G SA N+ ++ Sbjct: 62 GP-SAANVSVI 71 >gi|254474468|ref|ZP_05087854.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp. R11] gi|214028711|gb|EEB69546.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp. R11] Length = 68 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ G DVF+H SAV +GL L + Q V Y+ +Q +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPD---SGGSDVFVHISAVERSGLTGLADNQKVNYE-LQPGRDGR 59 Query: 65 YSAENLKLV 73 SA NL+LV Sbjct: 60 ESAVNLELV 68 >gi|320540138|ref|ZP_08039793.1| putative cold-shock DNA-binding domain-containing protein [Serratia symbiotica str. Tucson] gi|320029804|gb|EFW11828.1| putative cold-shock DNA-binding domain-containing protein [Serratia symbiotica str. Tucson] Length = 69 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ + N A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQHVEFE-ITNGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|329940593|ref|ZP_08289874.1| cold shock protein [Streptomyces griseoaurantiacus M045] gi|329300654|gb|EGG44551.1| cold shock protein [Streptomyces griseoaurantiacus M045] Length = 67 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H SA+ S+G L EGQ VT+D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSAINSSGFRELQEGQAVTFDVTQGQKGPQ 60 Query: 65 YSAENLKLV 73 AEN+ LV Sbjct: 61 --AENINLV 67 >gi|332295652|ref|YP_004437575.1| cold-shock DNA-binding domain protein [Thermodesulfobium narugense DSM 14796] gi|332178755|gb|AEE14444.1| cold-shock DNA-binding domain protein [Thermodesulfobium narugense DSM 14796] Length = 70 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFI+ + G+DVF+H SA+ S G +L EGQ VT+D ++ Sbjct: 1 MNKGTVKWFNAEKGYGFIS---NANGGEDVFVHFSAIVSDGFKSLNEGQQVTFDIEKDPK 57 Query: 62 NGK 64 N K Sbjct: 58 NSK 60 >gi|309389742|gb|ADO77622.1| cold-shock DNA-binding protein family [Halanaerobium praevalens DSM 2228] Length = 67 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 MV+ G++KW++ KGYGFI E GDDVF+H SA+ G L EGQ V ++ V+ D Sbjct: 1 MVYTGNVKWFDEKKGYGFI----EREDGDDVFVHFSALQQEGFKTLEEGQEVEFEIVEGD 56 Query: 61 ANGKYSAENLKLV 73 + AEN++++ Sbjct: 57 RGPQ--AENVEVI 67 >gi|255505169|ref|ZP_05344871.3| putative cold shock protein [Bryantella formatexigens DSM 14469] gi|255269407|gb|EET62612.1| putative cold shock protein [Bryantella formatexigens DSM 14469] Length = 91 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ V+YD + A Sbjct: 26 MNKGTVKWFNAEKGYGFITG----EDGADVFVHFSAIQGEGFKSLEEGQAVSYDLTEG-A 80 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 81 RGMQAANVVKL 91 >gi|13472379|ref|NP_103946.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|260467123|ref|ZP_05813302.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|319781908|ref|YP_004141384.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14023125|dbj|BAB49732.1| probable cold shock protein [Mesorhizobium loti MAFF303099] gi|259029135|gb|EEW30432.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|317167796|gb|ADV11334.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 70 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N KG+GFITP+G + DVF+H SA+ ++GL L +GQ VT+D V+ D Sbjct: 1 MAQTGTVKFFNATKGFGFITPDGGAK---DVFVHISAIEASGLRTLVDGQKVTFD-VEPD 56 Query: 61 ANGK-YSAENLK 71 GK A NL+ Sbjct: 57 RMGKGPKAVNLR 68 >gi|163842703|ref|YP_001627107.1| ATP/GTP-binding motif-containing protein [Brucella suis ATCC 23445] gi|163673426|gb|ABY37537.1| ATP/GTP-binding site motif A (P-loop) protein [Brucella suis ATCC 23445] Length = 69 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI P+ + DVF+H SAV AGL +L +GQ V Y+ V + +GK Sbjct: 4 GTVKFFNSTKGFGFIQPD---DGSSDVFVHISAVERAGLHSLVQGQKVGYEVVADRRSGK 60 Query: 65 YSAENLK 71 +A NL+ Sbjct: 61 SAAANLE 67 >gi|313906442|ref|ZP_07839778.1| cold-shock DNA-binding domain protein [Eubacterium cellulosolvens 6] gi|313468709|gb|EFR64075.1| cold-shock DNA-binding domain protein [Eubacterium cellulosolvens 6] Length = 66 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +++G++KW+N DKGYGFIT E G DVF+H SA+ G +L EGQ V+Y+ V+ Sbjct: 1 MNKGTVKWFNADKGYGFITG----EDGKDVFVHFSAIQGEGFKSLDEGQSVSYELVE 53 >gi|121711172|ref|XP_001273202.1| cold shock NA binding domain protein [Aspergillus clavatus NRRL 1] gi|119401352|gb|EAW11776.1| cold shock NA binding domain protein [Aspergillus clavatus NRRL 1] Length = 125 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFITP E+G+D+F+H AV G +L EGQ VT++ VQ Sbjct: 62 GTVKWFNDEKGYGFITP----ETGEDLFVHFRAVEGNGFKSLKEGQKVTFEAVQ 111 >gi|39934248|ref|NP_946524.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris CGA009] gi|39648096|emb|CAE26616.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009] Length = 86 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 5/75 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +LTEGQ ++++ V+ D Sbjct: 16 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFE-VEPD 71 Query: 61 ANGK-YSAENLKLVP 74 GK A NL + P Sbjct: 72 KKGKGPKAVNLVISP 86 >gi|220920391|ref|YP_002495692.1| cold-shock DNA-binding domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219944997|gb|ACL55389.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans ORS 2060] Length = 242 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KWY+P KG+GF++ + + G DVF+HRSA+A AGL +L EGQ VT D V+ Sbjct: 178 GTVKWYDPAKGFGFVSVK---DGGKDVFVHRSALARAGLDSLAEGQQVTMDVVE 228 Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++KW+N +KG+GF+ E GD D FLH AV +AG +L G +T Q Sbjct: 66 ATVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHTDLLPGTRLTVQTAQ 116 >gi|188584960|ref|YP_001916505.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349647|gb|ACB83917.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 68 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW++P KGYGFI E + G+DVF+H SA+ G L EGQ V ++ Q D Sbjct: 2 RGTVKWFDPKKGYGFIEKE---DDGEDVFVHFSAIQQEGFKTLEEGQKVEFEVTQGDKGP 58 Query: 64 KYSAENL 70 + AEN+ Sbjct: 59 Q--AENV 63 >gi|160914188|ref|ZP_02076410.1| hypothetical protein EUBDOL_00197 [Eubacterium dolichum DSM 3991] gi|158433999|gb|EDP12288.1| hypothetical protein EUBDOL_00197 [Eubacterium dolichum DSM 3991] Length = 66 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KGYGFIT T+ G DVF+H S++ + G L EGQ VT+D V++D Sbjct: 4 GKVKWFNAEKGYGFIT----TDEGKDVFVHYSSINADGFKTLEEGQAVTFDVVESD 55 >gi|160880994|ref|YP_001559962.1| cold-shock DNA-binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160429660|gb|ABX43223.1| cold-shock DNA-binding domain protein [Clostridium phytofermentans ISDg] Length = 67 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 43/57 (75%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +++G++KW+N KG+GFIT ++E+G+DVF+H S +AS G +L EGQ VT++ + Sbjct: 1 MNKGTVKWFNAQKGFGFIT---NSETGEDVFVHFSGIASEGFKSLEEGQNVTFEITK 54 >gi|296268070|ref|YP_003650702.1| cold-shock DNA-binding domain-containing protein [Thermobispora bispora DSM 43833] gi|296090857|gb|ADG86809.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM 43833] Length = 67 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +G++KW+NPDKG+GFI P+G DVF+H SA+ +G NL +GQ V +D V Sbjct: 3 QGTVKWFNPDKGFGFIAPDGGEP---DVFVHFSAIIGSGYRNLEDGQRVEFDIV 53 >gi|254466858|ref|ZP_05080269.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] gi|206687766|gb|EDZ48248.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] Length = 69 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE + G D+F+H SAV +GL L + Q VTY+ ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPE---DGGKDIFVHISAVERSGLTGLADNQKVTYE-LRAGRDGR 59 Query: 65 YSAENLKLV 73 SA ++ LV Sbjct: 60 ESAVDIALV 68 >gi|56707866|ref|YP_169762.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670337|ref|YP_666894.1| cold shock protein [Francisella tularensis subsp. tularensis FSC198] gi|115315074|ref|YP_763797.1| cold shock protein [Francisella tularensis subsp. holarctica OSU18] gi|134301709|ref|YP_001121677.1| cold shock DNA-binding domain-containing protein [Francisella tularensis subsp. tularensis WY96-3418] gi|187931528|ref|YP_001891512.1| cold shock protein, DNA-binding [Francisella tularensis subsp. mediasiatica FSC147] gi|224456944|ref|ZP_03665417.1| cold shock protein, DNA-binding [Francisella tularensis subsp. tularensis MA00-2987] gi|254369526|ref|ZP_04985537.1| hypothetical protein FTAG_01407 [Francisella tularensis subsp. holarctica FSC022] gi|254370361|ref|ZP_04986366.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874681|ref|ZP_05247391.1| cold shock protein [Francisella tularensis subsp. tularensis MA00-2987] gi|54113247|gb|AAV29257.1| NT02FT0936 [synthetic construct] gi|56604358|emb|CAG45384.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320670|emb|CAL08767.1| cold shock protein [Francisella tularensis subsp. tularensis FSC198] gi|115129973|gb|ABI83160.1| cold shock protein [Francisella tularensis subsp. holarctica OSU18] gi|134049486|gb|ABO46557.1| cold shock DNA-binding domain protein [Francisella tularensis subsp. tularensis WY96-3418] gi|151568604|gb|EDN34258.1| hypothetical protein FTBG_00121 [Francisella tularensis subsp. tularensis FSC033] gi|157122480|gb|EDO66615.1| hypothetical protein FTAG_01407 [Francisella tularensis subsp. holarctica FSC022] gi|187712437|gb|ACD30734.1| cold shock protein, DNA-binding [Francisella tularensis subsp. mediasiatica FSC147] gi|254840680|gb|EET19116.1| cold shock protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159046|gb|ADA78437.1| cold shock DNA-binding domain protein [Francisella tularensis subsp. tularensis NE061598] Length = 67 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 50/72 (69%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFI P+ + G DVF+H SAV +AGL +L EG+ V+++ +N Sbjct: 1 MRQGTVKFFNTSKGFGFIEPQ---DGGKDVFVHISAVENAGLSSLREGEKVSFEVEEN-- 55 Query: 62 NGKYSAENLKLV 73 GK +A N+K + Sbjct: 56 RGKMAAVNIKSI 67 >gi|291546919|emb|CBL20027.1| cold-shock DNA-binding protein family [Ruminococcus sp. SR1/5] Length = 66 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ V+YD + A Sbjct: 1 MNKGTVKWFNAEKGYGFITG----EDGQDVFVHFSAINGEGFKSLEEGQAVSYDLTEG-A 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGMQAANVTKL 66 >gi|260425469|ref|ZP_05779449.1| conserved domain protein [Citreicella sp. SE45] gi|260423409|gb|EEX16659.1| conserved domain protein [Citreicella sp. SE45] Length = 68 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE + DVF+H SA+ +GL L +GQ VT+D V++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIEPENGSR---DVFVHISALQRSGLDRLEDGQKVTFD-VESGRDGR 59 Query: 65 YSAENLKL 72 +A NL L Sbjct: 60 ENANNLAL 67 >gi|13472374|ref|NP_103941.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|14023120|dbj|BAB49727.1| probable cold shock protein [Mesorhizobium loti MAFF303099] Length = 68 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K+YN KG+GFI P + G DVF+H SA+ AG L EGQ + +D ++ D G+ Sbjct: 4 GIVKFYNGQKGFGFIQP---ADGGKDVFVHVSALERAGFPGLAEGQKLQFD-LERDGKGR 59 Query: 65 YSAENLKLV 73 SA NL+L+ Sbjct: 60 ESAANLQLI 68 >gi|157804047|ref|YP_001492596.1| cold shock-like protein [Rickettsia canadensis str. McKiel] gi|157785310|gb|ABV73811.1| cold shock-like protein [Rickettsia canadensis str. McKiel] Length = 70 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI E G DVF+H+SAV +AGL++L EGQ V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQE---HGGKDVFVHKSAVDAAGLYSLEEGQGVIFDL--EEKQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAVNLRI 69 >gi|221369643|ref|YP_002520739.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131] gi|221162695|gb|ACM03666.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131] Length = 68 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+G I P ++ DVF+H +A+ AG+ L +GQ VTYD ++ D NG+ Sbjct: 4 GTVKWFNSTKGFGSIAPAHGSK---DVFVHVTALERAGIRQLNDGQAVTYD-METDRNGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESAMNLVL 67 >gi|163736844|ref|ZP_02144262.1| cold shock family protein [Phaeobacter gallaeciensis BS107] gi|163743998|ref|ZP_02151367.1| cold shock family protein [Phaeobacter gallaeciensis 2.10] gi|161382758|gb|EDQ07158.1| cold shock family protein [Phaeobacter gallaeciensis 2.10] gi|161389448|gb|EDQ13799.1| cold shock family protein [Phaeobacter gallaeciensis BS107] Length = 68 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ G DVF+H SAV +GL L + Q VTY+ +Q +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPDA---GGSDVFVHISAVERSGLTGLADNQKVTYE-LQPGRDGR 59 Query: 65 YSAENLKL 72 SA N++L Sbjct: 60 ESAVNIEL 67 >gi|49082304|gb|AAT50552.1| PA0456 [synthetic construct] Length = 70 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFITP ESG DVF+H A+ G L EGQ V+++ VQ Sbjct: 6 GTVKWFNETKGYGFITP----ESGPDVFVHFRAIEGNGFKTLAEGQKVSFEVVQGQKG-- 59 Query: 65 YSAENLKLV 73 AE ++++ Sbjct: 60 MQAERVQVI 68 >gi|52079019|ref|YP_077810.1| cold-shock protein [Bacillus licheniformis ATCC 14580] gi|52784391|ref|YP_090220.1| hypothetical protein BLi00578 [Bacillus licheniformis ATCC 14580] gi|319648678|ref|ZP_08002889.1| cold shock-like protein cspLA [Bacillus sp. BT1B_CT2] gi|52002230|gb|AAU22172.1| cold-shock protein [Bacillus licheniformis ATCC 14580] gi|52346893|gb|AAU39527.1| CspC [Bacillus licheniformis ATCC 14580] gi|317389097|gb|EFV69913.1| cold shock-like protein cspLA [Bacillus sp. BT1B_CT2] Length = 67 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N +KG+GFI E+GDDVF+H SA+ S G +L EGQ VT+D Q Sbjct: 1 MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQ 53 >gi|270291153|ref|ZP_06197376.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus acidilactici 7_4] gi|270280549|gb|EFA26384.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus acidilactici 7_4] Length = 66 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKG+GFIT E G DVF+H SA+ S G L EGQ V++D ++D Sbjct: 1 MEQGTVKWFNADKGFGFIT----REDGSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESD 55 >gi|94971382|ref|YP_593430.1| cold-shock DNA-binding protein family protein [Candidatus Koribacter versatilis Ellin345] gi|94553432|gb|ABF43356.1| cold-shock DNA-binding protein family [Candidatus Koribacter versatilis Ellin345] Length = 66 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGF+T +SG+DVF+H SA+ S G +L EGQ V++ V+ Sbjct: 1 MEQGTVKWFNDAKGYGFLT----RQSGEDVFVHFSAIQSKGFRSLQEGQTVSFSVVKGPK 56 Query: 62 NGKYSAENLKLV 73 AEN+++V Sbjct: 57 G--LQAENVQIV 66 >gi|58038548|ref|YP_190512.1| putative transcriptional regulator cold shock protein [Gluconobacter oxydans 621H] gi|58000962|gb|AAW59856.1| Putative transcriptional regulator cold shock protein [Gluconobacter oxydans 621H] Length = 228 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 4/65 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KWYN KG+GFITPE G D+F+H SA+ +GL L EGQ + VQ G Sbjct: 164 RGTVKWYNATKGFGFITPE---SGGKDIFVHASALERSGLPTLDEGQTINVKVVQGQ-KG 219 Query: 64 KYSAE 68 +AE Sbjct: 220 PEAAE 224 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +KG+GF+ E S SG D+FLH +A+ +AG+ N+ G V Q G+ Sbjct: 64 VKWFNTEKGFGFV--ELSDGSG-DIFLHANALTNAGVSNVNPGATVVVRIGQG-PKGRQV 119 Query: 67 AENLKL 72 AE L + Sbjct: 120 AEVLSV 125 >gi|15595653|ref|NP_249147.1| cold-shock protein [Pseudomonas aeruginosa PAO1] gi|107099440|ref|ZP_01363358.1| hypothetical protein PaerPA_01000452 [Pseudomonas aeruginosa PACS2] gi|116054185|ref|YP_788629.1| putative cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14] gi|152984051|ref|YP_001345954.1| putative cold-shock protein [Pseudomonas aeruginosa PA7] gi|218889196|ref|YP_002438060.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58] gi|254237314|ref|ZP_04930637.1| hypothetical protein PACG_03384 [Pseudomonas aeruginosa C3719] gi|254243552|ref|ZP_04936874.1| hypothetical protein PA2G_04371 [Pseudomonas aeruginosa 2192] gi|296386954|ref|ZP_06876453.1| putative cold-shock protein [Pseudomonas aeruginosa PAb1] gi|313111918|ref|ZP_07797708.1| putative major cold shock protein [Pseudomonas aeruginosa 39016] gi|9946316|gb|AAG03845.1|AE004483_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1] gi|115589406|gb|ABJ15421.1| putative major cold shock protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126169245|gb|EAZ54756.1| hypothetical protein PACG_03384 [Pseudomonas aeruginosa C3719] gi|126196930|gb|EAZ60993.1| hypothetical protein PA2G_04371 [Pseudomonas aeruginosa 2192] gi|150959209|gb|ABR81234.1| probable cold-shock protein [Pseudomonas aeruginosa PA7] gi|218769419|emb|CAW25179.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58] gi|310884210|gb|EFQ42804.1| putative major cold shock protein [Pseudomonas aeruginosa 39016] Length = 69 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFITP ESG DVF+H A+ G L EGQ V+++ VQ Sbjct: 6 GTVKWFNETKGYGFITP----ESGPDVFVHFRAIEGNGFKTLAEGQKVSFEVVQGQKG-- 59 Query: 65 YSAENLKLV 73 AE ++++ Sbjct: 60 MQAERVQVI 68 >gi|326692849|ref|ZP_08229854.1| cold shock protein [Leuconostoc argentinum KCTC 3773] Length = 66 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N DKG+GFIT E +GDDVF H SA+ S G L EGQ VT+D D Sbjct: 1 METGTVKWFNGDKGFGFITRE----NGDDVFAHFSAIQSDGFKTLDEGQSVTFDVESGD 55 >gi|222082370|ref|YP_002541735.1| cold shock protein [Agrobacterium radiobacter K84] gi|221727049|gb|ACM30138.1| cold shock protein [Agrobacterium radiobacter K84] Length = 67 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKG+GFITPE G DVF+H SA+ G +L EG+ V+Y+ Q+ GK Sbjct: 4 GTVKFFNEDKGFGFITPE---NGGTDVFVHVSALQRGG--SLREGEKVSYELGQDRKTGK 58 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 59 SKAENVSVL 67 >gi|126699928|ref|YP_001088825.1| cold shock protein [Clostridium difficile 630] gi|254975893|ref|ZP_05272365.1| cold shock protein [Clostridium difficile QCD-66c26] gi|255093279|ref|ZP_05322757.1| cold shock protein [Clostridium difficile CIP 107932] gi|255101459|ref|ZP_05330436.1| cold shock protein [Clostridium difficile QCD-63q42] gi|255307332|ref|ZP_05351503.1| cold shock protein [Clostridium difficile ATCC 43255] gi|255315026|ref|ZP_05356609.1| cold shock protein [Clostridium difficile QCD-76w55] gi|255517696|ref|ZP_05385372.1| cold shock protein [Clostridium difficile QCD-97b34] gi|255650808|ref|ZP_05397710.1| cold shock protein [Clostridium difficile QCD-37x79] gi|255656285|ref|ZP_05401694.1| cold shock protein [Clostridium difficile QCD-23m63] gi|260683889|ref|YP_003215174.1| cold shock protein [Clostridium difficile CD196] gi|260687549|ref|YP_003218683.1| cold shock protein [Clostridium difficile R20291] gi|296450274|ref|ZP_06892035.1| cold shock protein CspA [Clostridium difficile NAP08] gi|296878689|ref|ZP_06902694.1| cold shock protein CspA [Clostridium difficile NAP07] gi|306520707|ref|ZP_07407054.1| cold shock protein [Clostridium difficile QCD-32g58] gi|115251365|emb|CAJ69197.1| Cold shock protein D [Clostridium difficile] gi|260210052|emb|CBA64132.1| cold shock protein [Clostridium difficile CD196] gi|260213566|emb|CBE05331.1| cold shock protein [Clostridium difficile R20291] gi|296261037|gb|EFH07871.1| cold shock protein CspA [Clostridium difficile NAP08] gi|296430496|gb|EFH16338.1| cold shock protein CspA [Clostridium difficile NAP07] Length = 66 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFI S ESGDDVF H SA+ ++G +L EGQ V++D V+ A Sbjct: 1 MNNGIVKWFNNEKGFGFI----SMESGDDVFAHFSAIQTSGFKSLEEGQKVSFDIVKG-A 55 Query: 62 NGKYSAENLKLV 73 G AEN+ ++ Sbjct: 56 RGP-QAENITIL 66 >gi|326692606|ref|ZP_08229611.1| cold-shock DNA-binding protein family protein [Leuconostoc argentinum KCTC 3773] Length = 66 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N DKG+GFIT E +GDDVF H SA+ S G L EGQ VT+D D Sbjct: 1 METGTVKWFNGDKGFGFITRE----NGDDVFAHFSAIQSNGFKTLDEGQSVTFDVESGD 55 >gi|221639814|ref|YP_002526076.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] gi|221160595|gb|ACM01575.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] Length = 83 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL L++ Q + Y+ +Q+ +G+ Sbjct: 19 GTVKWFNSTKGFGFIAPD---DGGKDVFVHISAVERAGLKGLSDNQKIGYE-LQSGRDGR 74 Query: 65 YSAENLKLV 73 SA +L+L+ Sbjct: 75 SSAGDLRLL 83 >gi|116334505|ref|YP_796032.1| cold shock protein [Lactobacillus brevis ATCC 367] gi|116099852|gb|ABJ65001.1| cold-shock DNA-binding protein family [Lactobacillus brevis ATCC 367] Length = 67 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKGYGFIT E+G DVF+H SA+ S G L EGQ V+ D Q D Sbjct: 1 MEQGTVKWFNADKGYGFIT----LENGSDVFVHFSAINSEGFKTLEEGQHVSLDVEQGD 55 >gi|294816656|ref|ZP_06775298.1| Cold-shock domain family protein [Streptomyces clavuligerus ATCC 27064] gi|294321471|gb|EFG03606.1| Cold-shock domain family protein [Streptomyces clavuligerus ATCC 27064] Length = 74 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFITP ESG D+F+H A+ G +L EGQ VT++ VQ Sbjct: 11 GTVKWFNDEKGYGFITP----ESGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQ 60 >gi|260427897|ref|ZP_05781876.1| conserved domain protein [Citreicella sp. SE45] gi|260422389|gb|EEX15640.1| conserved domain protein [Citreicella sp. SE45] Length = 68 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V+Y+ ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYE-LKEGRDGR 59 Query: 65 YSAENLKLV 73 A +LK + Sbjct: 60 MMASDLKTL 68 >gi|28377002|ref|NP_783894.1| cold shock protein CspL [Lactobacillus plantarum WCFS1] gi|254555197|ref|YP_003061614.1| cold shock protein CspL [Lactobacillus plantarum JDM1] gi|308179219|ref|YP_003923347.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ST-III] gi|2493769|sp|P96349|CSP2_LACPL RecName: Full=Cold shock protein 2 gi|1869948|emb|CAA70139.1| cold shock protein [Lactobacillus plantarum] gi|9968448|emb|CAC06093.1| cold shock protein [Lactobacillus plantarum] gi|28269833|emb|CAD62730.1| cold shock protein CspL [Lactobacillus plantarum WCFS1] gi|254044124|gb|ACT60917.1| cold shock protein CspL [Lactobacillus plantarum JDM1] gi|308044710|gb|ADN97253.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 66 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N DKG+GFIT E G DVF+H SA+ + G L EGQ VTYD Q D Sbjct: 1 MKNGTVKWFNADKGFGFITGE----DGTDVFVHFSAIQTDGFKTLDEGQKVTYDEEQGD 55 >gi|254420854|ref|ZP_05034578.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp. BAL3] gi|196187031|gb|EDX82007.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp. BAL3] Length = 67 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP KGYGFI P+ G DVF+H +AV AGL L E V Y+ + GK Sbjct: 4 GTVKWFNPTKGYGFIQPD---SGGSDVFVHVTAVQKAGLQGLDENAKVEYEL--ENQRGK 58 Query: 65 YSAENLKLV 73 SA +LKL+ Sbjct: 59 TSAIDLKLL 67 >gi|242238529|ref|YP_002986710.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] gi|242130586|gb|ACS84888.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] Length = 69 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + N A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSTGFKTLAEGQRVEFE-ITNGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|239628310|ref|ZP_04671341.1| cold-shock DNA-binding domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239518456|gb|EEQ58322.1| cold-shock DNA-binding domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 67 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +++G++KW+N KG+GFIT E E+G+D+F+H S +AS G +L +GQ VT+D Sbjct: 1 MNKGTVKWFNSQKGFGFITNE---ENGEDIFVHFSGIASNGFKSLEDGQSVTFD 51 >gi|209547434|ref|YP_002279352.1| cold-shock DNA-binding domain-containing protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538678|gb|ACI58612.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 67 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKG+GFITPE + G DVF+H SA+ G +L EG V++D Q+ GK Sbjct: 4 GTVKFFNDDKGFGFITPE---DGGQDVFVHVSALQRGG--SLREGDKVSFDVGQDRKTGK 58 Query: 65 YSAENL 70 AEN+ Sbjct: 59 SKAENV 64 >gi|254390979|ref|ZP_05006188.1| cold-shock DNA-binding domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|326445565|ref|ZP_08220299.1| cold-shock DNA-binding domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|197704675|gb|EDY50487.1| cold-shock DNA-binding domain-containing protein [Streptomyces clavuligerus ATCC 27064] Length = 70 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFITP ESG D+F+H A+ G +L EGQ VT++ VQ Sbjct: 7 GTVKWFNDEKGYGFITP----ESGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQ 56 >gi|56962604|ref|YP_174330.1| cold shock protein CspC [Bacillus clausii KSM-K16] gi|56908842|dbj|BAD63369.1| cold shock protein CspC [Bacillus clausii KSM-K16] Length = 66 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ V++D ++ A Sbjct: 1 MEQGTVKWFNAEKGFGFI----EREDGDDVFVHFSAIQSEGFKSLDEGQKVSFD-IEQGA 55 Query: 62 NGKYSA 67 G +A Sbjct: 56 RGAQAA 61 >gi|16077579|ref|NP_388393.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|221308339|ref|ZP_03590186.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|221312661|ref|ZP_03594466.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317584|ref|ZP_03598878.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221321860|ref|ZP_03603154.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. SMY] gi|321314161|ref|YP_004206448.1| cold-shock protein [Bacillus subtilis BSn5] gi|729220|sp|P39158|CSPC_BACSU RecName: Full=Cold shock protein CspC gi|1230546|dbj|BAA04956.1| cold shock protein [Bacillus subtilis] gi|1881321|dbj|BAA19348.1| COLD SHOCK PROTEIN [Bacillus subtilis] gi|2393787|gb|AAC45646.1| cold shock protein C [Bacillus subtilis] gi|2632812|emb|CAB12319.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|291482931|dbj|BAI84006.1| cold-shock protein [Bacillus subtilis subsp. natto BEST195] gi|320020435|gb|ADV95421.1| cold-shock protein [Bacillus subtilis BSn5] Length = 66 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E+GDDVF+H SA+ S G +L EGQ V++D V+ A Sbjct: 1 MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSDGFKSLDEGQKVSFD-VEQGA 55 Query: 62 NGKYSA 67 G +A Sbjct: 56 RGAQAA 61 >gi|291615324|ref|YP_003525481.1| cold-shock DNA-binding domain protein [Sideroxydans lithotrophicus ES-1] gi|291585436|gb|ADE13094.1| cold-shock DNA-binding domain protein [Sideroxydans lithotrophicus ES-1] Length = 68 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP + GDD+F H SA+ S+G LTEGQ V++D Sbjct: 4 GTVKWFNDSKGFGFITP---SNGGDDLFAHFSAIQSSGFKTLTEGQQVSFD 51 >gi|296532288|ref|ZP_06895027.1| cold shock protein CspA [Roseomonas cervicalis ATCC 49957] gi|296267364|gb|EFH13250.1| cold shock protein CspA [Roseomonas cervicalis ATCC 49957] Length = 68 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE ++ DVFLH S V +GL EG+ + YD +Q GK Sbjct: 4 GTVKWFNATKGYGFIQPEDGSK---DVFLHVSDVQRSGLREPREGERLQYD-LQQGQQGK 59 Query: 65 YSAENLK 71 SA NL+ Sbjct: 60 VSATNLR 66 >gi|188586205|ref|YP_001917750.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350892|gb|ACB85162.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 66 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N DKGYGFI EG DDVF+H SA+ G L EGQ V ++ V+ G Sbjct: 3 KGIVKWFNSDKGYGFIQVEGE----DDVFVHFSAIQEEGFKTLDEGQQVEFNVVEGQ-RG 57 Query: 64 KYSAENLKL 72 +AE +KL Sbjct: 58 PQAAEVVKL 66 >gi|116618954|ref|YP_819325.1| cold-shock DNA-binding protein family protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227431399|ref|ZP_03913450.1| CspA family cold shock transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|48727558|gb|AAT46080.1| cold shock protein [Leuconostoc mesenteroides] gi|116097801|gb|ABJ62952.1| cold-shock DNA-binding protein family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227352862|gb|EEJ43037.1| CspA family cold shock transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 66 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KGYGFIT E SG+DVF H SA+ G L EGQ VT+D +D Sbjct: 1 MEKGTVKWFNGEKGYGFITRE----SGEDVFAHFSAIQGDGFKTLDEGQAVTFDVETSD 55 >gi|297196688|ref|ZP_06914086.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|297153348|gb|EFH32317.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] Length = 67 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP+KG+GFI +G G DVF+H SA+AS G L EGQ V +D Q + Sbjct: 4 GTVKWFNPEKGFGFIEQDGG---GPDVFVHYSAIASTGFRELFEGQKVQFDVTQGPKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENV 64 >gi|126739741|ref|ZP_01755432.1| cold shock family protein [Roseobacter sp. SK209-2-6] gi|126718973|gb|EBA15684.1| cold shock family protein [Roseobacter sp. SK209-2-6] Length = 68 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE + G DVF+H SAV +GL L + Q V+Y+ +Q +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPE---DGGKDVFVHISAVERSGLTGLADNQKVSYE-LQPGRDGR 59 Query: 65 YSAENLKLV 73 SA +L L+ Sbjct: 60 ESAVDLALL 68 >gi|118497319|ref|YP_898369.1| cold shock protein [Francisella tularensis subsp. novicida U112] gi|167627835|ref|YP_001678335.1| cold-shock DNA-binding domain-containing protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|195536005|ref|ZP_03079012.1| cold-shock' DNA-binding domain, putative [Francisella tularensis subsp. novicida FTE] gi|208779106|ref|ZP_03246452.1| cold-shock' DNA-binding domain protein, putative [Francisella novicida FTG] gi|241668393|ref|ZP_04755971.1| cold-shock DNA-binding domain-containing protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254372686|ref|ZP_04988175.1| hypothetical protein FTCG_00251 [Francisella tularensis subsp. novicida GA99-3549] gi|254374143|ref|ZP_04989625.1| hypothetical protein FTDG_00305 [Francisella novicida GA99-3548] gi|254876926|ref|ZP_05249636.1| cold shock protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|118423225|gb|ABK89615.1| cold shock protein, DNA-binding [Francisella novicida U112] gi|151570413|gb|EDN36067.1| hypothetical protein FTCG_00251 [Francisella novicida GA99-3549] gi|151571863|gb|EDN37517.1| hypothetical protein FTDG_00305 [Francisella novicida GA99-3548] gi|167597836|gb|ABZ87834.1| putative cold-shock DNA-binding domain protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|194372482|gb|EDX27193.1| cold-shock' DNA-binding domain, putative [Francisella tularensis subsp. novicida FTE] gi|208744906|gb|EDZ91204.1| cold-shock' DNA-binding domain protein, putative [Francisella novicida FTG] gi|254842947|gb|EET21361.1| cold shock protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|328676804|gb|AEB27674.1| Cold shock protein CspC [Francisella cf. novicida Fx1] Length = 67 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 50/72 (69%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFI P+ + G DVF+H SAV +AGL +L EG+ ++++ +N Sbjct: 1 MRQGTVKFFNTSKGFGFIEPQ---DGGKDVFVHISAVENAGLSSLREGEKISFEVEEN-- 55 Query: 62 NGKYSAENLKLV 73 GK +A N+K + Sbjct: 56 RGKMAAVNIKSI 67 >gi|16974801|pdb|1HZ9|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability gi|16974802|pdb|1HZ9|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability Length = 66 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KGYGFI EG G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQRGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQAVSFEIVQGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|332716945|ref|YP_004444411.1| Cold shock protein cspA [Agrobacterium sp. H13-3] gi|325063630|gb|ADY67320.1| Cold shock protein cspA [Agrobacterium sp. H13-3] Length = 67 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++ DKG+GFITP+ G DVF+H SAV G +L +GQ V+YD Q+ GK Sbjct: 4 GTVKFFAQDKGFGFITPD---NGGPDVFVHISAVGFGG--SLQDGQKVSYDVGQDRKTGK 58 Query: 65 YSAENLKLV 73 AEN+ L+ Sbjct: 59 SKAENVSLI 67 >gi|167768567|ref|ZP_02440620.1| hypothetical protein CLOSS21_03126 [Clostridium sp. SS2/1] gi|317498676|ref|ZP_07956968.1| cold-shock' DNA-binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710091|gb|EDS20670.1| hypothetical protein CLOSS21_03126 [Clostridium sp. SS2/1] gi|291560528|emb|CBL39328.1| cold-shock DNA-binding protein family [butyrate-producing bacterium SSC/2] gi|316894018|gb|EFV16208.1| cold-shock' DNA-binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 66 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI S ESGDDVF+H SA+ G L EGQ V+++ ++ GK Sbjct: 4 GTVKWFNAEKGYGFI----SQESGDDVFVHFSAIQGKGFKTLEEGQSVSFE-IEEGPRGK 58 Query: 65 YSAENLKL 72 ++ KL Sbjct: 59 QASNVTKL 66 >gi|254512165|ref|ZP_05124232.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae bacterium KLH11] gi|221535876|gb|EEE38864.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae bacterium KLH11] Length = 68 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V+Y+ +Q+ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVSYE-LQDGRDGR 59 Query: 65 YSAENLK 71 A +LK Sbjct: 60 QMAADLK 66 >gi|330994825|ref|ZP_08318747.1| Cold shock-like protein CspE [Gluconacetobacter sp. SXCC-1] gi|329758086|gb|EGG74608.1| Cold shock-like protein CspE [Gluconacetobacter sp. SXCC-1] Length = 229 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 3/64 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KWYN KG+GFITPE G D+F+H SA+ +GL LTEGQ V+ Sbjct: 165 RGTVKWYNAAKGFGFITPE---NGGKDIFVHASALERSGLSGLTEGQTANVQVVEGQKGP 221 Query: 64 KYSA 67 + +A Sbjct: 222 EAAA 225 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ E S SG DVFLH +A+ G + G + Q + Sbjct: 60 TVKWFNSEKGFGFV--ELSDGSG-DVFLHANALNPTGHATVAPGTTLVVQIGQGPKGRQV 116 Query: 66 SA 67 +A Sbjct: 117 AA 118 >gi|66045400|ref|YP_235241.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|289673296|ref|ZP_06494186.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae FF5] gi|302187611|ref|ZP_07264284.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae 642] gi|63256107|gb|AAY37203.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|330898081|gb|EGH29500.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. japonica str. M301072PT] gi|330951864|gb|EGH52124.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7] gi|330973953|gb|EGH74019.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris str. M302273PT] Length = 70 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 3/52 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ VT+ Sbjct: 5 QTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDGFKSLKEGQTVTF 53 >gi|218290263|ref|ZP_03494417.1| cold-shock DNA-binding domain protein [Alicyclobacillus acidocaldarius LAA1] gi|258512161|ref|YP_003185595.1| cold-shock DNA-binding domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218239738|gb|EED06929.1| cold-shock DNA-binding domain protein [Alicyclobacillus acidocaldarius LAA1] gi|257478887|gb|ACV59206.1| cold-shock DNA-binding domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 66 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N +KGYGFI E+GDDVF+H SA+ G L EGQ VT+D V+ Sbjct: 1 MYEGTVKWFNSEKGYGFI----QVENGDDVFVHYSAIQGHGFKTLDEGQRVTFDIVE 53 >gi|110679166|ref|YP_682173.1| cold shock family protein-related protein, putative [Roseobacter denitrificans OCh 114] gi|163735034|ref|ZP_02142471.1| cold shock family protein-related protein, putative [Roseobacter litoralis Och 149] gi|109455282|gb|ABG31487.1| cold shock family protein-related protein, putative [Roseobacter denitrificans OCh 114] gi|161391816|gb|EDQ16148.1| cold shock family protein-related protein, putative [Roseobacter litoralis Och 149] Length = 68 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PEG G DVF+H SAV +GL L + Q V ++ + +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPEG---GGSDVFVHISAVERSGLTGLADDQKVDFELTEG-RDGR 59 Query: 65 YSAENLKLV 73 A +LKL+ Sbjct: 60 QMASDLKLL 68 >gi|192289774|ref|YP_001990379.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] gi|192283523|gb|ACE99903.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] Length = 71 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 5/75 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +LTEGQ ++++ V+ D Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFE-VEPD 56 Query: 61 ANGK-YSAENLKLVP 74 GK A NL + P Sbjct: 57 KKGKGPKAVNLVISP 71 >gi|222086272|ref|YP_002544804.1| cold shock protein [Agrobacterium radiobacter K84] gi|221723720|gb|ACM26876.1| cold shock protein [Agrobacterium radiobacter K84] Length = 70 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 3/55 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M +G +K++N DKG+GFITP+G + DVF+H SA+ ++G+ +L EGQ VT+D Sbjct: 1 MATKGIVKFFNQDKGFGFITPDGGAK---DVFVHISALQASGIQSLREGQQVTFD 52 >gi|260575739|ref|ZP_05843736.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] gi|259022137|gb|EEW25436.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] Length = 68 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H SAV AGL L + Q + ++ +Q+ +GK Sbjct: 4 GTVKWFNSTKGYGFIAPD---DGGKDVFVHISAVERAGLKGLNDNQKIGFE-LQSGRDGK 59 Query: 65 YSAENLKLV 73 SA +L+L+ Sbjct: 60 QSAGDLRLL 68 >gi|322833919|ref|YP_004213946.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|321169120|gb|ADW74819.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] Length = 69 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA++S G L EGQ V ++ + N A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAISSNGFKTLAEGQRVEFE-ITNGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|227551594|ref|ZP_03981643.1| cold shock protein CspC [Enterococcus faecium TX1330] gi|257884481|ref|ZP_05664134.1| cold shock protein CspC [Enterococcus faecium 1,231,501] gi|257895800|ref|ZP_05675453.1| cold shock protein CspC [Enterococcus faecium Com12] gi|257898422|ref|ZP_05678075.1| cold shock protein CspC [Enterococcus faecium Com15] gi|293377586|ref|ZP_06623775.1| cold-shock DNA-binding domain protein [Enterococcus faecium PC4.1] gi|293571778|ref|ZP_06682794.1| cold-shock protein [Enterococcus faecium E980] gi|227179271|gb|EEI60243.1| cold shock protein CspC [Enterococcus faecium TX1330] gi|257820319|gb|EEV47467.1| cold shock protein CspC [Enterococcus faecium 1,231,501] gi|257832365|gb|EEV58786.1| cold shock protein CspC [Enterococcus faecium Com12] gi|257836334|gb|EEV61408.1| cold shock protein CspC [Enterococcus faecium Com15] gi|291608032|gb|EFF37338.1| cold-shock protein [Enterococcus faecium E980] gi|292643586|gb|EFF61707.1| cold-shock DNA-binding domain protein [Enterococcus faecium PC4.1] Length = 65 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +++G++KW+N DKG+GFIT E G+DVF H SA+ G +L EGQ VTYD Sbjct: 1 MNKGTVKWFNSDKGFGFITGE----DGNDVFAHFSAIQGEGFKSLDEGQAVTYD 50 >gi|261409631|ref|YP_003245872.1| cold-shock DNA-binding domain-containing protein [Paenibacillus sp. Y412MC10] gi|329928767|ref|ZP_08282616.1| cold shock-like protein CspE [Paenibacillus sp. HGF5] gi|261286094|gb|ACX68065.1| cold-shock DNA-binding domain protein [Paenibacillus sp. Y412MC10] gi|328937548|gb|EGG33966.1| cold shock-like protein CspE [Paenibacillus sp. HGF5] Length = 65 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI TE G DVF+H SA+ S G L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFNAEKGYGFI----ETEDGGDVFVHFSAIQSEGFKTLEEGQSVEFEIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|325278203|ref|ZP_08143698.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] gi|324096664|gb|EGB95015.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] Length = 70 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFITP ESG D+F+H A+ G +L EGQ VT++ VQ Sbjct: 7 GTVKWFNDEKGYGFITP----ESGPDLFVHFRAIEGNGFKSLKEGQKVTFEAVQ 56 >gi|170723394|ref|YP_001751082.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida W619] gi|169761397|gb|ACA74713.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619] Length = 70 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFITP ESG D+F+H A+ G +L EGQ VT++ VQ Sbjct: 7 GTVKWFNDEKGYGFITP----ESGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQ 56 >gi|33598908|ref|NP_886551.1| putative cold shock-like protein [Bordetella parapertussis 12822] gi|33603987|ref|NP_891547.1| putative cold shock-like protein [Bordetella bronchiseptica RB50] gi|33568963|emb|CAE35377.1| putative cold shock-like protein [Bordetella bronchiseptica RB50] gi|33575038|emb|CAE39704.1| putative cold shock-like protein [Bordetella parapertussis] Length = 68 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V ++ V++ Sbjct: 1 MAQKGKVKWFNADKGYGFITPD---SGGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56 Query: 61 ANGKYSAE 68 G +AE Sbjct: 57 PKGPQAAE 64 >gi|330469983|ref|YP_004407726.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] gi|328812954|gb|AEB47126.1| cold-shock DNA-binding domain protein [Verrucosispora maris AB-18-032] Length = 67 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFITP+G G DVF H SA+ S+G +L E Q V ++ VQ + Sbjct: 4 GTVKWFNADKGFGFITPDG---GGADVFAHFSAIQSSGYRSLDENQRVEFEVVQGQKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENIR 65 >gi|317401626|gb|EFV82252.1| cold shock protein [Achromobacter xylosoxidans C54] Length = 68 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V ++ V++ Sbjct: 1 MAQKGKVKWFNADKGYGFITPDA---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56 Query: 61 ANGKYSAE 68 G +AE Sbjct: 57 PKGPQAAE 64 >gi|260576175|ref|ZP_05844168.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] gi|259021655|gb|EEW24958.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] Length = 68 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P + DVF+H SA+ AG+ L +GQ VT+D +++ +G+ Sbjct: 4 GTVKWFNATKGFGFIAPANGNK---DVFVHVSAMERAGIRQLDDGQAVTFD-IESGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESAINLAL 67 >gi|329850898|ref|ZP_08265743.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] gi|328841213|gb|EGF90784.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] Length = 66 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G DVF+H +AV AGL L +GQ +TY+ GK Sbjct: 4 GTVKWFNSTKGFGFIQPDAG---GSDVFVHITAVERAGLRGLNDGQKITYELATE--KGK 58 Query: 65 YSAENLK 71 SA NL+ Sbjct: 59 TSAVNLQ 65 >gi|260589144|ref|ZP_05855057.1| cold-shock domain protein [Blautia hansenii DSM 20583] gi|331082560|ref|ZP_08331685.1| cold shock-like protein cspLA [Lachnospiraceae bacterium 6_1_63FAA] gi|260540564|gb|EEX21133.1| cold-shock domain protein [Blautia hansenii DSM 20583] gi|330400538|gb|EGG80168.1| cold shock-like protein cspLA [Lachnospiraceae bacterium 6_1_63FAA] Length = 66 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ V+YD + A Sbjct: 1 MNKGTVKWFNAEKGYGFITG----EDGQDVFVHFSAINGEGFKSLEEGQAVSYDLTEG-A 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGMQAANVEKL 66 >gi|163760029|ref|ZP_02167113.1| cold-shock DNA-binding domain protein [Hoeflea phototrophica DFL-43] gi|162282987|gb|EDQ33274.1| cold-shock DNA-binding domain protein [Hoeflea phototrophica DFL-43] Length = 69 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K+YN KG+GFI P+ ++ DVF+H +A+ AG+ L EGQ V++D ++ GK Sbjct: 4 GTVKFYNDQKGFGFIAPDDGSK---DVFVHATALERAGMRGLAEGQKVSFDTAEDRRTGK 60 Query: 65 YSAENLK 71 + +N++ Sbjct: 61 TAVQNIQ 67 >gi|225867733|ref|YP_002743681.1| cold shock protein [Streptococcus equi subsp. zooepidemicus] gi|225869669|ref|YP_002745616.1| cold shock protein [Streptococcus equi subsp. equi 4047] gi|225699073|emb|CAW92213.1| cold shock protein [Streptococcus equi subsp. equi 4047] gi|225701009|emb|CAW97768.1| cold shock protein [Streptococcus equi subsp. zooepidemicus] Length = 69 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI STE+G DVF H SA+ S G +L EGQ VT+D V++ G Sbjct: 5 QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQSDGFRSLDEGQRVTFD-VEDGQRG 59 Query: 64 KYSAENLKL 72 + KL Sbjct: 60 PQAVNITKL 68 >gi|163791309|ref|ZP_02185723.1| cold shock protein [Carnobacterium sp. AT7] gi|159873450|gb|EDP67540.1| cold shock protein [Carnobacterium sp. AT7] Length = 66 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG GDD+F+H SA+ G +L EGQ V ++ V+ + Sbjct: 1 MEKGTVKWFNAEKGFGFIEVEG----GDDIFVHFSAITGDGFKSLEEGQAVEFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGAQAANVVKL 66 >gi|326389103|ref|ZP_08210684.1| cold-shock DNA-binding protein family protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206409|gb|EGD57245.1| cold-shock DNA-binding protein family protein [Novosphingobium nitrogenifigens DSM 19370] Length = 164 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K++N KG+GFI E + G+DVF+H SAV AGL L EGQ + ++ V D G Sbjct: 10 KGVVKFFNAQKGFGFIQRE---DGGEDVFVHISAVERAGLEGLAEGQQLQFNLV--DRGG 64 Query: 64 KYSAENLKLV 73 K SA +L++V Sbjct: 65 KISAADLQVV 74 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 6/72 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFIT + + D F+H SAV +GL L EG + +D ++ D GK Sbjct: 98 GTVKFFNSMKGFGFITRD---DGQPDAFVHISAVERSGLRELNEGDKLEFD-LEVDRRGK 153 Query: 65 YSAENLKLVPKS 76 +SA N LVP+ Sbjct: 154 HSAVN--LVPRQ 163 >gi|77463958|ref|YP_353462.1| cold-shock DNA-binding protein family protein [Rhodobacter sphaeroides 2.4.1] gi|126462801|ref|YP_001043915.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|146276900|ref|YP_001167059.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|332558830|ref|ZP_08413152.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides WS8N] gi|77388376|gb|ABA79561.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides 2.4.1] gi|126104465|gb|ABN77143.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17029] gi|145555141|gb|ABP69754.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17025] gi|332276542|gb|EGJ21857.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 68 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AGL L++ Q + Y+ +Q+ +G+ Sbjct: 4 GTVKWFNSTKGFGFIAPD---DGGKDVFVHISAVERAGLKGLSDNQKIGYE-LQSGRDGR 59 Query: 65 YSAENLKLV 73 SA +L+L+ Sbjct: 60 SSAGDLRLL 68 >gi|121535516|ref|ZP_01667325.1| cold-shock DNA-binding domain protein [Thermosinus carboxydivorans Nor1] gi|121305935|gb|EAX46868.1| cold-shock DNA-binding domain protein [Thermosinus carboxydivorans Nor1] Length = 68 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI E G DVF+H SA+ G +LTEGQ V +D V+ G Sbjct: 3 GKVKWFNAEKGYGFI----EREDGGDVFVHFSAIQEQGFKSLTEGQTVEFDIVEG-TRGP 57 Query: 65 YSAENLKLV 73 +A +KLV Sbjct: 58 QAANVVKLV 66 >gi|149180594|ref|ZP_01859098.1| cold-shock domain family protein [Bacillus sp. SG-1] gi|148851747|gb|EDL65893.1| cold-shock domain family protein [Bacillus sp. SG-1] Length = 66 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N +KG+GFI EG G+DVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MEKGTVKWFNAEKGFGFIEVEG----GEDVFVHFSAIQGEGFKSLDEGQAVTFDIEQ 53 >gi|67458654|ref|YP_246278.1| cold shock-like protein [Rickettsia felis URRWXCal2] gi|75536880|sp|Q4UMU5|CSPA_RICFE RecName: Full=Cold shock-like protein CspA gi|67004187|gb|AAY61113.1| Cold shock-like protein [Rickettsia felis URRWXCal2] Length = 70 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI E G DVF+H+SAV +AGL +L EGQ V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQENG---GKDVFVHKSAVDAAGLHSLEEGQYVIFDL--EEKQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAVNLRI 69 >gi|297560839|ref|YP_003679813.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845287|gb|ADH67307.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 70 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFITP ESG D+F+H A+ G +L EGQ V+++ VQ Sbjct: 7 GTVKWFNDEKGYGFITP----ESGPDLFVHFRAIEGTGFKSLQEGQTVSFEAVQ 56 >gi|309388512|gb|ADO76392.1| cold-shock DNA-binding protein family [Halanaerobium praevalens DSM 2228] Length = 67 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M++ G++KW++ KG+GFI E GDDVF H SA+ G NL EGQ V ++ V+ D Sbjct: 1 MIYTGTVKWFDGKKGFGFI----EREDGDDVFAHFSAIEEEGFKNLEEGQEVEFEIVEGD 56 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 57 -RGPQAANIVKL 67 >gi|1169112|sp|P42016|CSPB_BACST RecName: Full=Cold shock protein CspB; AltName: Full=Major cold shock protein gi|1129127|emb|CAA51792.1| major cold shock protein (CspB) [Geobacillus stearothermophilus] gi|740006|prf||2004289C cold shock protein Length = 66 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KGYGFI EG G DVF+H +A+ G +L EGQ V+++ VQ + Sbjct: 1 MQRGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKSLEEGQEVSFEIVQGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|328545836|ref|YP_004305945.1| cold shock transcription regulator [polymorphum gilvum SL003B-26A1] gi|326415576|gb|ADZ72639.1| Probable cold shock transcription regulator [Polymorphum gilvum SL003B-26A1] Length = 68 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI PE + DVF+H SAV +G+ L EGQ V ++ ++ D G+ Sbjct: 4 GTVKFFNGQKGFGFIQPEDGSR---DVFVHISAVERSGIGRLDEGQKVQFE-LEQDRQGR 59 Query: 65 YSAENLKLV 73 SA NL+L+ Sbjct: 60 SSAANLQLL 68 >gi|310815352|ref|YP_003963316.1| cold shock family protein [Ketogulonicigenium vulgare Y25] gi|308754087|gb|ADO42016.1| cold shock family protein [Ketogulonicigenium vulgare Y25] Length = 68 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+G ++ DVF+H SAV +GL L + Q V +D +++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPDGGSK---DVFVHISAVQRSGLEGLKDNQKVRFD-IESSRDGR 59 Query: 65 YSAENLKL 72 SA NL + Sbjct: 60 ESAVNLSV 67 >gi|291561124|emb|CBL39923.1| cold-shock DNA-binding protein family [butyrate-producing bacterium SS3/4] Length = 70 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KGYGFI+ + GDDVF+H SA+ G L EGQ VT+D Q+ Sbjct: 1 MNNGTVKWFNSEKGYGFISND---NGGDDVFVHFSAIVGDGFKTLEEGQKVTFDTEQDPK 57 Query: 62 NGK 64 N K Sbjct: 58 NSK 60 >gi|288556191|ref|YP_003428126.1| cold shock protein [Bacillus pseudofirmus OF4] gi|288547351|gb|ADC51234.1| cold shock protein [Bacillus pseudofirmus OF4] Length = 67 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 4/60 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N +KG+GFI EG G+DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MTQTGTVKWFNAEKGFGFIEVEG----GNDVFVHFSAITGEGFKSLDEGQAVEFEIVEGD 56 >gi|110678556|ref|YP_681563.1| cold shock protein CspA [Roseobacter denitrificans OCh 114] gi|109454672|gb|ABG30877.1| cold shock protein CspA [Roseobacter denitrificans OCh 114] Length = 68 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ G D+F+H SAV AGL L + Q VT++ ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPD---SGGKDIFVHISAVERAGLTGLADNQKVTFE-IETSRDGR 59 Query: 65 YSAENLKL 72 SA +L + Sbjct: 60 ESASDLAI 67 >gi|73663621|ref|YP_302402.1| cold shock protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496136|dbj|BAE19457.1| cold shock protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 66 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI EG G+DVF+H SA+A G +L EGQ V ++ V+ D Sbjct: 1 MNNGTVKWFNAEKGFGFIEVEG----GNDVFVHFSAIAQEGYKSLEEGQAVEFEIVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|50952760|gb|AAT90293.1| putative cold shock protein [uncultured proteobacterium eBACred25D05] Length = 68 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI P ++ G+DVF+H SAV +GL L E QLV ++ V+ +G Sbjct: 3 QGKVKWFNTTKGFGFIEP---SDGGNDVFVHISAVQKSGLKGLAEDQLVNFELVEG-RDG 58 Query: 64 KYSAENLKL 72 + A+ L L Sbjct: 59 RQMADELSL 67 >gi|289522213|ref|ZP_06439067.1| cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504049|gb|EFD25213.1| cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 67 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M +G++KW+N KGYGFIT +G G DVF+H SA+ G L EGQ V+++ VQ Sbjct: 1 MKTQGTVKWFNESKGYGFITADG----GKDVFVHYSAIQQDGFKTLAEGQRVSFEIVQ 54 >gi|116254513|ref|YP_770349.1| putative cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841] gi|115259161|emb|CAK10276.1| putative cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841] Length = 67 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKG+GFITPE G DVF+H SA+ G +L EG VT++ Q+ GK Sbjct: 4 GTVKFFNDDKGFGFITPE---TGGTDVFVHVSALQQGG--SLREGDKVTFEVGQDRKTGK 58 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 59 SKAENVSVL 67 >gi|323703019|ref|ZP_08114675.1| cold-shock DNA-binding domain protein [Desulfotomaculum nigrificans DSM 574] gi|323532032|gb|EGB21915.1| cold-shock DNA-binding domain protein [Desulfotomaculum nigrificans DSM 574] Length = 65 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI E G DVF+H SA+ G +LTEGQ V +D V+ A G Sbjct: 3 GKVKWFNAEKGYGFI----EREEGGDVFVHFSAIQEEGFKSLTEGQEVEFDIVEG-ARGP 57 Query: 65 YSAENLKL 72 +A +KL Sbjct: 58 QAANVVKL 65 >gi|312882977|ref|ZP_07742708.1| putative cold shock protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309369137|gb|EFP96658.1| putative cold shock protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 70 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITPE G DVF+H A+AS G L EGQ V+++ Q Sbjct: 7 GTVKWFNEEKGFGFITPE---NGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQ 57 >gi|253575890|ref|ZP_04853224.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844684|gb|EES72698.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 65 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI TE G DVF+H SA+ + G L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFNAEKGYGFI----ETEEGGDVFVHFSAIQAEGFKTLEEGQSVEFEIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|83592856|ref|YP_426608.1| cold-shock DNA-binding protein family protein [Rhodospirillum rubrum ATCC 11170] gi|83575770|gb|ABC22321.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC 11170] Length = 68 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + DVF+H +AV AGL +L EGQ V ++ ++ +GK Sbjct: 4 GTVKWFNGTKGYGFIEPD---DGSADVFVHITAVQQAGLDSLREGQKVAFE-LERGRSGK 59 Query: 65 YSAENLK 71 +A NLK Sbjct: 60 MAASNLK 66 >gi|56419891|ref|YP_147209.1| cold shock protein [Geobacillus kaustophilus HTA426] gi|138894876|ref|YP_001125329.1| major cold shock protein CspB [Geobacillus thermodenitrificans NG80-2] gi|196248552|ref|ZP_03147253.1| cold-shock DNA-binding domain protein [Geobacillus sp. G11MC16] gi|261419562|ref|YP_003253244.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC61] gi|295402279|ref|ZP_06812235.1| cold-shock DNA-binding domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|297530466|ref|YP_003671741.1| cold-shock DNA-binding domain protein [Geobacillus sp. C56-T3] gi|312111498|ref|YP_003989814.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y4.1MC1] gi|319766378|ref|YP_004131879.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC52] gi|729217|sp|P41016|CSPB_BACCL RecName: Full=Cold shock protein CspB gi|7546262|pdb|1C9O|A Chain A, Crystal Structure Analysis Of The Bacillus Caldolyticus Cold Shock Protein Bc-Csp gi|7546263|pdb|1C9O|B Chain B, Crystal Structure Analysis Of The Bacillus Caldolyticus Cold Shock Protein Bc-Csp gi|146386838|pdb|2HAX|A Chain A, Crystal Structure Of Bacillus Caldolyticus Cold Shock Protein In Complex With Hexathymidine gi|146386839|pdb|2HAX|B Chain B, Crystal Structure Of Bacillus Caldolyticus Cold Shock Protein In Complex With Hexathymidine gi|1333711|emb|CAA51790.1| major cold shock protein (CspB) [Bacillus caldolyticus] gi|56379733|dbj|BAD75641.1| cold shock protein [Geobacillus kaustophilus HTA426] gi|134266389|gb|ABO66584.1| Major cold shock protein CspB [Geobacillus thermodenitrificans NG80-2] gi|196212277|gb|EDY07035.1| cold-shock DNA-binding domain protein [Geobacillus sp. G11MC16] gi|261376019|gb|ACX78762.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC61] gi|294975672|gb|EFG51294.1| cold-shock DNA-binding domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|297253718|gb|ADI27164.1| cold-shock DNA-binding domain protein [Geobacillus sp. C56-T3] gi|311216599|gb|ADP75203.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y4.1MC1] gi|317111244|gb|ADU93736.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC52] gi|740004|prf||2004289A cold shock protein Length = 66 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KGYGFI EG G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQRGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|293376634|ref|ZP_06622862.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis PC909] gi|325839413|ref|ZP_08166852.1| cold shock protein CspD [Turicibacter sp. HGF1] gi|292644860|gb|EFF62942.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis PC909] gi|325490533|gb|EGC92849.1| cold shock protein CspD [Turicibacter sp. HGF1] Length = 66 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI+ EG G+DVF+H SA+ G L EGQ V++D V+ + Sbjct: 1 MNTGTVKWFNAEKGFGFISVEG----GEDVFVHYSAITGEGFKTLEEGQKVSFDIVEGNR 56 Query: 62 NGKYS 66 + S Sbjct: 57 GAQAS 61 >gi|296284922|ref|ZP_06862920.1| cold shock protein [Citromicrobium bathyomarinum JL354] Length = 270 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K++N KG+GFI EG GDDVF+H SAV AGL L EGQ + ++ V D G Sbjct: 103 KGQVKFFNGQKGFGFIQQEGG---GDDVFVHISAVERAGLEGLAEGQELEFNLV--DRGG 157 Query: 64 KYSAENLKLV 73 K SA++L++V Sbjct: 158 KISAQDLQVV 167 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GF+ + + D F+H SAV +GL + EG+ +D ++ D GK Sbjct: 204 GTVKFFNSMKGFGFLVRD---DGQPDAFVHISAVERSGLSQINEGERYEFD-LEVDRRGK 259 Query: 65 YSAENL 70 YSA NL Sbjct: 260 YSAVNL 265 >gi|195977285|ref|YP_002122529.1| major cold-shock protein [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195973990|gb|ACG61516.1| major cold-shock protein [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 67 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI STE+G DVF H SA+ S G +L EGQ VT+D V++ G Sbjct: 3 QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQSDGFRSLDEGQRVTFD-VEDGQRG 57 Query: 64 KYSAENLKL 72 + KL Sbjct: 58 PQAVNITKL 66 >gi|104781104|ref|YP_607602.1| cold shock protein CapA [Pseudomonas entomophila L48] gi|95110091|emb|CAK14796.1| cold shock protein CapA [Pseudomonas entomophila L48] Length = 70 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 3/52 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KGYGFITP G GDD+F+H A+ S G +L EGQ VT+ Sbjct: 5 QNGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQAVTF 53 >gi|254461151|ref|ZP_05074567.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium HTCC2083] gi|206677740|gb|EDZ42227.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacteraceae bacterium HTCC2083] Length = 68 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PEG G+DVF+H SAV +GL L + Q ++++ +++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIEPEG---GGNDVFVHISAVERSGLTGLADNQKISFE-LEDGRDGR 59 Query: 65 YSAENLKLV 73 A NL L+ Sbjct: 60 QMAANLALL 68 >gi|85709645|ref|ZP_01040710.1| cold shock protein [Erythrobacter sp. NAP1] gi|85688355|gb|EAQ28359.1| cold shock protein [Erythrobacter sp. NAP1] Length = 262 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFI E G+DVF+H SAV AGL L EGQ + ++ V D G Sbjct: 108 KGTVKFFNGQKGFGFIQQE---SGGEDVFVHISAVERAGLEGLAEGQELEFNLV--DRGG 162 Query: 64 KYSAENLKLV 73 K SA++L++V Sbjct: 163 KVSAQDLQVV 172 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GF+ + + D F+H SAV +GL + EG+ +D ++ D GK Sbjct: 196 GTVKFFNSMKGFGFLVRD---DGQPDAFVHISAVERSGLSAINEGERFEFD-LEVDRRGK 251 Query: 65 YSAENL 70 YSA NL Sbjct: 252 YSAVNL 257 >gi|148550775|ref|YP_001260214.1| cold-shock DNA-binding protein family protein [Sphingomonas wittichii RW1] gi|148503194|gb|ABQ71447.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1] Length = 71 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKGYGFI PE G D F+H SAV AG L + Q ++Y+ ++ D GK Sbjct: 6 GTVKFFNADKGYGFIAPE---TGGQDAFVHISAVERAGFNTLNQNQRLSYE-LETDRRGK 61 Query: 65 YSAENLK 71 SA NL+ Sbjct: 62 TSAVNLQ 68 >gi|75758582|ref|ZP_00738701.1| Cold shock protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206972882|ref|ZP_03233804.1| conserved domain protein [Bacillus cereus AH1134] gi|228905763|ref|ZP_04069678.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|228943462|ref|ZP_04105906.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976283|ref|ZP_04136754.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229073834|ref|ZP_04206924.1| Cold shock protein cspB [Bacillus cereus F65185] gi|229191418|ref|ZP_04318403.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|74493928|gb|EAO57025.1| Cold shock protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206731766|gb|EDZ48966.1| conserved domain protein [Bacillus cereus AH1134] gi|228592100|gb|EEK49934.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|228709285|gb|EEL61369.1| Cold shock protein cspB [Bacillus cereus F65185] gi|228783387|gb|EEM31495.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816242|gb|EEM62423.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853880|gb|EEM98623.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] Length = 67 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ VT+D Q Sbjct: 1 MEKGNVKWFNGEKGFGFIEREG----GDDVFVHFSAIQGEGYKTLEEGQAVTFDLEQ 53 >gi|304407680|ref|ZP_07389331.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] gi|304343163|gb|EFM09006.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] Length = 65 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI TE G DVF+H SA+ + G L EGQ V +D V+ A G Sbjct: 2 QGKVKWFNAEKGYGFI----ETEQGGDVFVHFSAIQADGFKTLEEGQAVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A KL Sbjct: 57 PQAANVTKL 65 >gi|225574379|ref|ZP_03782989.1| hypothetical protein RUMHYD_02448 [Blautia hydrogenotrophica DSM 10507] gi|225038381|gb|EEG48627.1| hypothetical protein RUMHYD_02448 [Blautia hydrogenotrophica DSM 10507] Length = 66 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ V+YD + A Sbjct: 1 MNKGTVKWFNAEKGYGFITG----EDGADVFVHFSAINGEGFKSLEEGQSVSYDLTEG-A 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGMQAANVTKL 66 >gi|261404186|ref|YP_003240427.1| cold-shock DNA-binding domain-containing protein [Paenibacillus sp. Y412MC10] gi|261280649|gb|ACX62620.1| cold-shock DNA-binding domain protein [Paenibacillus sp. Y412MC10] Length = 66 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G+DVF+H SA+A G +L EGQ V ++ VQ Sbjct: 1 MQTGTVKWFNAEKGFGFIEVEG----GEDVFVHFSAIAGDGFKSLDEGQRVEFNVVQ--G 54 Query: 62 NGKYSAENL 70 N AEN+ Sbjct: 55 NRGQQAENV 63 >gi|312144475|ref|YP_003995921.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] gi|309388505|gb|ADO76385.1| cold-shock DNA-binding protein family [Halanaerobium praevalens DSM 2228] gi|311905126|gb|ADQ15567.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] Length = 67 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M++ G++KW++ KG+GFI E GDDVF H SA+ G NL EGQ V ++ V+ D Sbjct: 1 MIYTGTVKWFDGKKGFGFI----EREDGDDVFAHFSAIEEEGFKNLDEGQEVEFEIVEGD 56 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 57 -RGPQAANIVKL 67 >gi|257865258|ref|ZP_05644911.1| cold shock protein CspC [Enterococcus casseliflavus EC30] gi|257871586|ref|ZP_05651239.1| cold shock protein CspC [Enterococcus casseliflavus EC10] gi|257799192|gb|EEV28244.1| cold shock protein CspC [Enterococcus casseliflavus EC30] gi|257805750|gb|EEV34572.1| cold shock protein CspC [Enterococcus casseliflavus EC10] Length = 66 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +++G++KW+N DKG+GFIT E+G DVF H SA+ + G +L EGQ VT+D Sbjct: 1 MNKGTVKWFNADKGFGFITG----ENGQDVFAHFSAIQADGFKSLDEGQAVTFD 50 >gi|257784693|ref|YP_003179910.1| cold-shock DNA-binding domain-containing protein [Atopobium parvulum DSM 20469] gi|257473200|gb|ACV51319.1| cold-shock DNA-binding domain protein [Atopobium parvulum DSM 20469] Length = 67 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+NPDKGYGFI S E GDD+F+H S + G L EGQ V ++ + NG Sbjct: 3 QGTVKWFNPDKGYGFI----SREDGDDLFVHFSEIQMDGFKTLDEGQPVEFE-ITTGQNG 57 Query: 64 KYSAENLKLV 73 K A ++ + Sbjct: 58 KLQASSVHKI 67 >gi|167035306|ref|YP_001670537.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida GB-1] gi|170720314|ref|YP_001748002.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida W619] gi|166861794|gb|ABZ00202.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1] gi|169758317|gb|ACA71633.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619] Length = 69 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/50 (52%), Positives = 36/50 (72%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KGYGFITP +SGDD+F+H A+ + G L EGQ VT+ Sbjct: 7 GTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQADGFKTLKEGQAVTF 52 >gi|146306439|ref|YP_001186904.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina ymp] gi|145574640|gb|ABP84172.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp] Length = 69 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFITP +SGDD+F+H A+ S G +L EGQ V+ +V Sbjct: 7 GTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVS--FVATRGQKG 60 Query: 65 YSAENLKLV 73 AE ++++ Sbjct: 61 MQAEEVQVI 69 >gi|310826977|ref|YP_003959334.1| cold shock protein [Eubacterium limosum KIST612] gi|308738711|gb|ADO36371.1| cold shock protein [Eubacterium limosum KIST612] Length = 66 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +++G++KW+N +KG+GFI S E GDDVF+H SA+ G L EGQ VT+D Sbjct: 1 MNKGTVKWFNSEKGFGFI----SREEGDDVFVHFSAITGDGFKTLNEGQEVTFD 50 >gi|163736889|ref|ZP_02144307.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis BS107] gi|163740688|ref|ZP_02148082.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis 2.10] gi|161386546|gb|EDQ10921.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis 2.10] gi|161389493|gb|EDQ13844.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis BS107] Length = 68 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE G DVF+H SAV +GL L + Q V+Y+ ++ +GK Sbjct: 4 GTVKWFNATKGYGFIEPE---SGGKDVFVHISAVERSGLNGLNDNQKVSYE-LETGRDGK 59 Query: 65 YSAENLKLV 73 SA +L+L+ Sbjct: 60 QSAGSLELL 68 >gi|149185382|ref|ZP_01863698.1| cold shock protein [Erythrobacter sp. SD-21] gi|148830602|gb|EDL49037.1| cold shock protein [Erythrobacter sp. SD-21] Length = 263 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFI E G+D+F+H SAV AGL L EGQ + ++ V D G Sbjct: 110 KGTVKFFNSQKGFGFIQQE---TGGEDIFVHISAVERAGLEGLAEGQELEFNLV--DRGG 164 Query: 64 KYSAENLKLV 73 K SA++L++V Sbjct: 165 KVSAQDLQVV 174 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GF+T + + D F+H SAV +GL + EG+ +D ++ D GK Sbjct: 198 GTVKFFNSMKGFGFLTRD---DGQPDAFVHISAVERSGLSQINEGERYEFD-LEVDRRGK 253 Query: 65 YSAENL 70 YSA NL Sbjct: 254 YSAVNL 259 >gi|58040591|ref|YP_192555.1| cold shock protein [Gluconobacter oxydans 621H] gi|58003005|gb|AAW61899.1| Cold shock protein [Gluconobacter oxydans 621H] Length = 96 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D F+H S + AG+ L EGQ V+Y+ +++ NGK Sbjct: 32 GTVKWFNSTKGFGFIQPD---NGGQDAFVHISELERAGMHTLNEGQHVSYE-LESGRNGK 87 Query: 65 YSAENLKLV 73 SA ++K + Sbjct: 88 TSAVSIKAI 96 >gi|257867741|ref|ZP_05647394.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC30] gi|257869629|ref|ZP_05649282.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2] gi|257874069|ref|ZP_05653722.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC10] gi|257876646|ref|ZP_05656299.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC20] gi|325571055|ref|ZP_08146627.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] gi|257801824|gb|EEV30727.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC30] gi|257803793|gb|EEV32615.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2] gi|257808233|gb|EEV37055.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC10] gi|257810812|gb|EEV39632.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC20] gi|325156140|gb|EGC68326.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] Length = 66 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N DKG+GFIT E +G+DVF+H SA+ G L EGQ VT+D Sbjct: 1 METGTVKWFNSDKGFGFITAE----NGNDVFVHFSAIQGEGFKTLEEGQAVTFD 50 >gi|294101897|ref|YP_003553755.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] gi|293616877|gb|ADE57031.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] Length = 67 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M +G++KW+N KGYGFIT T+ G D+F+H SA+ + G L EGQ V+++ V+ Sbjct: 1 MTTQGTVKWFNASKGYGFIT----TDEGKDIFVHFSAIQTEGFKTLEEGQRVSFEIVE 54 >gi|223985451|ref|ZP_03635510.1| hypothetical protein HOLDEFILI_02816 [Holdemania filiformis DSM 12042] gi|223962540|gb|EEF66993.1| hypothetical protein HOLDEFILI_02816 [Holdemania filiformis DSM 12042] Length = 66 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFIT T+ G DVF+H SA+ + G L +G+ V+++ VQ+D G+ Sbjct: 4 GKVKWFNAEKGYGFIT----TDEGKDVFVHYSAIQTDGFKTLDDGEAVSFEVVQSD-RGE 58 Query: 65 YSAENLKL 72 +A KL Sbjct: 59 QAANVCKL 66 >gi|283479166|emb|CAY75082.1| Cold shock-like protein cspE (CSP-E) [Erwinia pyrifoliae DSM 12163] Length = 79 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + N A G Sbjct: 15 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 70 Query: 64 KYSA 67 +A Sbjct: 71 PSAA 74 >gi|163735236|ref|ZP_02142671.1| cold shock protein CspA [Roseobacter litoralis Och 149] gi|161391450|gb|EDQ15784.1| cold shock protein CspA [Roseobacter litoralis Och 149] Length = 68 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ G D+F+H SAV AGL L + Q VT++ ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPD---NGGKDIFVHISAVERAGLTGLADNQKVTFE-IETSRDGR 59 Query: 65 YSAENLKL 72 SA +L + Sbjct: 60 ESASDLAI 67 >gi|304317414|ref|YP_003852559.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|323704655|ref|ZP_08116233.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|302778916|gb|ADL69475.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|323536117|gb|EGB25890.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 67 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N +KGYGFI EG G DVF+H SA+ G L EGQ V +D V+ + Sbjct: 3 RGKVKWFNAEKGYGFIEREG----GSDVFVHYSAIEQDGFKTLEEGQEVEFDIVEAEKGP 58 Query: 64 KYSAENLKLV 73 + A N+K V Sbjct: 59 Q--AANVKKV 66 >gi|163791280|ref|ZP_02185694.1| cold-shock domain family protein [Carnobacterium sp. AT7] gi|159873421|gb|EDP67511.1| cold-shock domain family protein [Carnobacterium sp. AT7] Length = 66 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +KG+GFI EG+ DDVF+H SA+ + G +L EGQ VT+D Sbjct: 1 MEQGTVKWFNAEKGFGFIEREGA----DDVFVHFSAIQTDGFKSLEEGQTVTFD 50 >gi|159043321|ref|YP_001532115.1| cold-shock DNA-binding domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157911081|gb|ABV92514.1| cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL 12] Length = 69 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ E G DVF+H SAV AGL L + + Y+ ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERAGLTGLADNTKIEYE-LREGRDGR 59 Query: 65 YSAENLKLV 73 SA LK+V Sbjct: 60 SSATELKVV 68 >gi|28377937|ref|NP_784829.1| cold shock protein CspP [Lactobacillus plantarum WCFS1] gi|254556121|ref|YP_003062538.1| cold shock protein CspP [Lactobacillus plantarum JDM1] gi|300766640|ref|ZP_07076557.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180118|ref|YP_003924246.1| cold shock protein CspP [Lactobacillus plantarum subsp. plantarum ST-III] gi|2493768|sp|P71478|CSP1_LACPL RecName: Full=Cold shock protein 1 gi|1620431|emb|CAA70005.1| csp [Lactobacillus plantarum] gi|9968450|emb|CAC06094.1| cold shock protein [Lactobacillus plantarum] gi|28270771|emb|CAD63676.1| cold shock protein CspP [Lactobacillus plantarum WCFS1] gi|254045048|gb|ACT61841.1| cold shock protein CspP [Lactobacillus plantarum JDM1] gi|300495740|gb|EFK30891.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045609|gb|ADN98152.1| cold shock protein CspP [Lactobacillus plantarum subsp. plantarum ST-III] Length = 66 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N DKGYGFIT E G+DVF+H SA+ + G L EGQ VT+D +D Sbjct: 1 MKNGTVKWFNADKGYGFIT----GEDGNDVFVHFSAIQTDGFKTLEEGQKVTFDEESSD 55 >gi|295688372|ref|YP_003592065.1| cold-shock DNA-binding domain-containing protein [Caulobacter segnis ATCC 21756] gi|295430275|gb|ADG09447.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC 21756] Length = 69 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D+F+H SAV AGL L EGQ ++++ + +GK Sbjct: 4 GTVKWFNSAKGFGFIQPD---NGGQDIFVHISAVERAGLNGLNEGQKLSFEPEVDRRSGK 60 Query: 65 YSAENLKLV 73 SA L+ V Sbjct: 61 TSAGQLQAV 69 >gi|94498414|ref|ZP_01304972.1| cold-shock DNA-binding domain protein [Sphingomonas sp. SKA58] gi|94422169|gb|EAT07212.1| cold-shock DNA-binding domain protein [Sphingomonas sp. SKA58] Length = 70 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 4/70 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKGYGFI P+ T D F+H +AV AGL L E V+YD ++ D Sbjct: 1 MAITGTVKFFNADKGYGFIAPDDGTP---DAFVHITAVERAGLATLREKDRVSYD-LEQD 56 Query: 61 ANGKYSAENL 70 GK +A NL Sbjct: 57 RRGKMAAVNL 66 >gi|328957165|ref|YP_004374551.1| putative cold shock protein, CspA family [Carnobacterium sp. 17-4] gi|328673489|gb|AEB29535.1| putative cold shock protein, CspA family [Carnobacterium sp. 17-4] Length = 66 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +KG+GFI EG+ DDVF+H SA+ G +L EGQ VT+D Sbjct: 1 MEQGTVKWFNAEKGFGFIEREGA----DDVFVHFSAIQGEGFKSLEEGQAVTFD 50 >gi|315649820|ref|ZP_07902903.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|315274794|gb|EFU38175.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] Length = 65 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI TE G DVF+H SA+ S G L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFNAEKGYGFI----ETEDGGDVFVHFSAIQSEGFKTLEEGQSVEFEIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +K+ Sbjct: 57 PQAANVIKI 65 >gi|220923754|ref|YP_002499056.1| cold-shock DNA-binding domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219948361|gb|ACL58753.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans ORS 2060] Length = 69 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K+YN KG+GFI PE ++ DVF+H +A+ AGL +L++GQ V++D ++ +GK Sbjct: 4 GIVKFYNDQKGFGFIQPEDGSK---DVFVHATALERAGLGSLSQGQKVSFDTAEDRRSGK 60 Query: 65 YSAENLKL 72 + N++ Sbjct: 61 MAVNNIQF 68 >gi|33594722|ref|NP_882366.1| putative cold shock-like protein [Bordetella pertussis Tohama I] gi|33564798|emb|CAE44126.1| putative cold shock-like protein [Bordetella pertussis Tohama I] gi|332384133|gb|AEE68980.1| putative cold shock-like protein [Bordetella pertussis CS] Length = 68 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V ++ V++ Sbjct: 1 MAQKGKVKWFNADKGYGFITPD---SGGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDV 56 Query: 61 ANGKYSAE 68 G +AE Sbjct: 57 PKGPQAAE 64 >gi|71907020|ref|YP_284607.1| cold-shock DNA-binding protein family protein [Dechloromonas aromatica RCB] gi|71846641|gb|AAZ46137.1| cold-shock DNA-binding protein family [Dechloromonas aromatica RCB] Length = 67 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 38/51 (74%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ + G+D+F H SA+ S+G LTEGQ V++D Sbjct: 4 GTVKWFNDSKGFGFITPD---QGGEDLFAHFSAIQSSGFKTLTEGQKVSFD 51 >gi|330502376|ref|YP_004379245.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] gi|328916662|gb|AEB57493.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] Length = 69 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFITP +SGDD+F+H A+ S G L EGQ V+ +V Sbjct: 7 GTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQSDGFKTLKEGQQVS--FVATRGQKG 60 Query: 65 YSAENLKLV 73 AE ++++ Sbjct: 61 MQAEEVQVI 69 >gi|300722306|ref|YP_003711591.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus nematophila ATCC 19061] gi|297628808|emb|CBJ89386.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus nematophila ATCC 19061] Length = 69 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N KG+GFITPE ++ DVF+H SA+ S+G L EGQ V ++ + D Sbjct: 5 KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAIKSSGFKTLAEGQKVEFEITEGD 58 >gi|182677655|ref|YP_001831801.1| cold-shock DNA-binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633538|gb|ACB94312.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 70 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++K++N DKGYGFI P+ + G D+F+H +AV AGL L EGQ ++Y+ ++ D Sbjct: 1 MSQQGTVKFFNSDKGYGFIKPD---DGGRDIFVHITAVERAGLQALNEGQRLSYE-IEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KKGK 60 >gi|312144474|ref|YP_003995920.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] gi|311905125|gb|ADQ15566.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] Length = 67 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M++ G++KW++ KG+GFI E GDDVF H SA+ G NL EGQ V ++ V+ D Sbjct: 1 MIYTGTVKWFDGKKGFGFI----EREDGDDVFAHFSAIQEDGFKNLEEGQEVEFEIVEGD 56 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 57 -RGPQAANIVKL 67 >gi|226322941|ref|ZP_03798459.1| hypothetical protein COPCOM_00713 [Coprococcus comes ATCC 27758] gi|225208727|gb|EEG91081.1| hypothetical protein COPCOM_00713 [Coprococcus comes ATCC 27758] Length = 67 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 3/59 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +++G++KW+N KGYGFIT E +G+DVF+H S +A G +L EGQ VT+D + + Sbjct: 1 MNKGTVKWFNAQKGYGFITNE---STGEDVFVHFSGIAGEGYKSLEEGQNVTFDITEGN 56 >gi|225387921|ref|ZP_03757685.1| hypothetical protein CLOSTASPAR_01691 [Clostridium asparagiforme DSM 15981] gi|225045964|gb|EEG56210.1| hypothetical protein CLOSTASPAR_01691 [Clostridium asparagiforme DSM 15981] Length = 86 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 42/55 (76%), Gaps = 3/55 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +++G++KW+N KG+GFIT ++E+G+D+F+H S +AS G +L +GQ VT+D Sbjct: 19 FMNKGTVKWFNSQKGFGFIT---NSENGEDIFVHYSGIASNGFKSLEDGQSVTFD 70 >gi|188534489|ref|YP_001908286.1| cold shock protein CspE [Erwinia tasmaniensis Et1/99] gi|259909137|ref|YP_002649493.1| cold shock protein CspE [Erwinia pyrifoliae Ep1/96] gi|292487595|ref|YP_003530467.1| cold shock-like protein CspE [Erwinia amylovora CFBP1430] gi|292898834|ref|YP_003538203.1| cold shock-like protein [Erwinia amylovora ATCC 49946] gi|300715812|ref|YP_003740615.1| Cold shock protein [Erwinia billingiae Eb661] gi|188029531|emb|CAO97408.1| Putative cold shock-like protein [Erwinia tasmaniensis Et1/99] gi|224964759|emb|CAX56276.1| similar to cold shock protein CspE [Erwinia pyrifoliae Ep1/96] gi|291198682|emb|CBJ45791.1| cold shock-like protein [Erwinia amylovora ATCC 49946] gi|291553014|emb|CBA20059.1| Cold shock-like protein cspE (CSP-E) [Erwinia amylovora CFBP1430] gi|299061648|emb|CAX58764.1| Cold shock protein [Erwinia billingiae Eb661] gi|310766962|gb|ADP11912.1| Cold shock-like protein cspE (CSP-E) [Erwinia sp. Ejp617] gi|312171701|emb|CBX79959.1| Cold shock-like protein cspE (CSP-E) [Erwinia amylovora ATCC BAA-2158] Length = 69 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + N A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 60 Query: 64 KYSA 67 +A Sbjct: 61 PSAA 64 >gi|258542278|ref|YP_003187711.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-01] gi|329113442|ref|ZP_08242223.1| Cold shock-like protein CspE [Acetobacter pomorum DM001] gi|256633356|dbj|BAH99331.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-01] gi|256636415|dbj|BAI02384.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-03] gi|256639468|dbj|BAI05430.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-07] gi|256642524|dbj|BAI08479.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-22] gi|256645579|dbj|BAI11527.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-26] gi|256648632|dbj|BAI14573.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-32] gi|256651685|dbj|BAI17619.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654676|dbj|BAI20603.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-12] gi|326697267|gb|EGE48927.1| Cold shock-like protein CspE [Acetobacter pomorum DM001] Length = 225 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 4/65 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KWYN KG+GFITPE G D+F+H SA+ +GL L EGQ V VQ G Sbjct: 161 RGTVKWYNSVKGFGFITPE---SGGKDIFVHASALERSGLSALNEGQGVNVKVVQGQ-KG 216 Query: 64 KYSAE 68 +AE Sbjct: 217 PEAAE 221 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ T DVFLH +A++ AG ++ G + Q G+ Sbjct: 63 TVKWFNSEKGFGFVELADGT---GDVFLHANALSQAGHQGVSPGATLVVRIGQG-PKGRQ 118 Query: 66 SAENLKL 72 AE + + Sbjct: 119 VAEVISV 125 >gi|83589095|ref|YP_429104.1| cold-shock DNA-binding protein family protein [Moorella thermoacetica ATCC 39073] gi|83572009|gb|ABC18561.1| cold-shock DNA-binding protein family [Moorella thermoacetica ATCC 39073] Length = 65 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+NP+KGYGFI E G DVF+H SA+ G L EGQ V +D V+ Sbjct: 2 QGKVKWFNPEKGYGFI----EREDGKDVFVHFSAIQEEGFKTLAEGQEVEFDIVE 52 >gi|294676164|ref|YP_003576779.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003] gi|294474984|gb|ADE84372.1| cold shock protein CspA-1 [Rhodobacter capsulatus SB 1003] Length = 68 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N +KG+GFI PEG + DVF+H SAV AG+ L +G VT+ +++ +G+ Sbjct: 4 GTVKFFNQNKGFGFIEPEGGAQ---DVFVHISAVERAGISRLVDGAKVTFQ-IESGRDGR 59 Query: 65 YSAENLKLV 73 SA +L LV Sbjct: 60 KSACDLALV 68 >gi|152977181|ref|YP_001376698.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025933|gb|ABS23703.1| putative cold-shock DNA-binding domain protein [Bacillus cytotoxicus NVH 391-98] Length = 66 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG GDDVF+H SA+ S G L EGQ V+++ V+ + Sbjct: 1 MQTGKVKWFNSEKGFGFIEVEG----GDDVFVHFSAIQSEGFKTLEEGQEVSFEIVEGN 55 >gi|227550530|ref|ZP_03980579.1| cold shock protein [Enterococcus faecium TX1330] gi|257880205|ref|ZP_05659858.1| cold-shock protein [Enterococcus faecium 1,230,933] gi|257883006|ref|ZP_05662659.1| cold-shock protein [Enterococcus faecium 1,231,502] gi|257885248|ref|ZP_05664901.1| cold-shock protein [Enterococcus faecium 1,231,501] gi|257888557|ref|ZP_05668210.1| cold-shock protein [Enterococcus faecium 1,141,733] gi|257891411|ref|ZP_05671064.1| cold-shock protein [Enterococcus faecium 1,231,410] gi|257893592|ref|ZP_05673245.1| cold-shock protein [Enterococcus faecium 1,231,408] gi|257897068|ref|ZP_05676721.1| cold-shock protein [Enterococcus faecium Com12] gi|257899006|ref|ZP_05678659.1| cold-shock protein [Enterococcus faecium Com15] gi|258614393|ref|ZP_05712163.1| cold shock protein [Enterococcus faecium DO] gi|260560497|ref|ZP_05832671.1| cold-shock protein [Enterococcus faecium C68] gi|261209014|ref|ZP_05923419.1| cold-shock protein [Enterococcus faecium TC 6] gi|289565174|ref|ZP_06445626.1| cold shock-like protein cspD [Enterococcus faecium D344SRF] gi|293378756|ref|ZP_06624914.1| major cold shock protein CspA [Enterococcus faecium PC4.1] gi|293553256|ref|ZP_06673893.1| cold-shock protein [Enterococcus faecium E1039] gi|293563316|ref|ZP_06677766.1| cold-shock protein [Enterococcus faecium E1162] gi|293569311|ref|ZP_06680609.1| cold-shock protein [Enterococcus faecium E1071] gi|293572477|ref|ZP_06683456.1| cold-shock protein [Enterococcus faecium E980] gi|294615298|ref|ZP_06695174.1| cold-shock protein [Enterococcus faecium E1636] gi|294619063|ref|ZP_06698558.1| cold shock protein [Enterococcus faecium E1679] gi|294621461|ref|ZP_06700630.1| cold-shock protein [Enterococcus faecium U0317] gi|314939797|ref|ZP_07847017.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|314943906|ref|ZP_07850632.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|314950003|ref|ZP_07853296.1| major cold shock protein CspA [Enterococcus faecium TX0082] gi|314953525|ref|ZP_07856437.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|314994272|ref|ZP_07859574.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|314995140|ref|ZP_07860256.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|227180431|gb|EEI61403.1| cold shock protein [Enterococcus faecium TX1330] gi|257814433|gb|EEV43191.1| cold-shock protein [Enterococcus faecium 1,230,933] gi|257818664|gb|EEV45992.1| cold-shock protein [Enterococcus faecium 1,231,502] gi|257821100|gb|EEV48234.1| cold-shock protein [Enterococcus faecium 1,231,501] gi|257824611|gb|EEV51543.1| cold-shock protein [Enterococcus faecium 1,141,733] gi|257827771|gb|EEV54397.1| cold-shock protein [Enterococcus faecium 1,231,410] gi|257829971|gb|EEV56578.1| cold-shock protein [Enterococcus faecium 1,231,408] gi|257833633|gb|EEV60054.1| cold-shock protein [Enterococcus faecium Com12] gi|257836918|gb|EEV61992.1| cold-shock protein [Enterococcus faecium Com15] gi|260073499|gb|EEW61827.1| cold-shock protein [Enterococcus faecium C68] gi|260077053|gb|EEW64775.1| cold-shock protein [Enterococcus faecium TC 6] gi|289162995|gb|EFD10843.1| cold shock-like protein cspD [Enterococcus faecium D344SRF] gi|291588017|gb|EFF19867.1| cold-shock protein [Enterococcus faecium E1071] gi|291591856|gb|EFF23489.1| cold-shock protein [Enterococcus faecium E1636] gi|291594724|gb|EFF26106.1| cold shock protein [Enterococcus faecium E1679] gi|291598955|gb|EFF30003.1| cold-shock protein [Enterococcus faecium U0317] gi|291602666|gb|EFF32881.1| cold-shock protein [Enterococcus faecium E1039] gi|291604768|gb|EFF34252.1| cold-shock protein [Enterococcus faecium E1162] gi|291607394|gb|EFF36737.1| cold-shock protein [Enterococcus faecium E980] gi|292642684|gb|EFF60836.1| major cold shock protein CspA [Enterococcus faecium PC4.1] gi|313590631|gb|EFR69476.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|313591307|gb|EFR70152.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|313594448|gb|EFR73293.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|313597447|gb|EFR76292.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|313640937|gb|EFS05517.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|313643650|gb|EFS08230.1| major cold shock protein CspA [Enterococcus faecium TX0082] Length = 66 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFIT +G GDDVF+H SA+ G +L EGQ V + V+ A Sbjct: 1 MEHGTVKWFNNEKGFGFITVDG----GDDVFVHFSAIQGDGFKSLEEGQEVEFTIVEG-A 55 Query: 62 NGKYSAENLKL 72 G +AE KL Sbjct: 56 RGPQAAEVTKL 66 >gi|170721149|ref|YP_001748837.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida W619] gi|169759152|gb|ACA72468.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619] Length = 70 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 3/52 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW+N +KGYGFITP G GDD+F+H A+ S G +L EGQ V++ Sbjct: 5 QQGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53 >gi|123443227|ref|YP_001007201.1| cold shock protein CspE [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238752587|ref|ZP_04614060.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380] gi|332160847|ref|YP_004297424.1| cold shock protein CspE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122090188|emb|CAL13051.1| cold shock-like protein cspE1 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238709178|gb|EEQ01423.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380] gi|318604749|emb|CBY26247.1| cold shock protein CspE [Yersinia enterocolitica subsp. palearctica Y11] gi|325665077|gb|ADZ41721.1| cold shock protein CspE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863376|emb|CBX73498.1| cold shock-like protein cspE [Yersinia enterocolitica W22703] Length = 69 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ + + A G Sbjct: 5 KGSVKWFNEAKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFE-ITSGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|119944855|ref|YP_942535.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119863459|gb|ABM02936.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 67 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 36/51 (70%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N DKG+GFITPE E G+D+F+H S + + G L EGQ V Y+ Sbjct: 4 GTVKWFNADKGFGFITPE---EGGNDLFVHHSQIKTGGYATLNEGQKVEYE 51 >gi|160938586|ref|ZP_02085938.1| hypothetical protein CLOBOL_03481 [Clostridium bolteae ATCC BAA-613] gi|158438285|gb|EDP16044.1| hypothetical protein CLOBOL_03481 [Clostridium bolteae ATCC BAA-613] Length = 67 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 41/54 (75%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +++G++KW+N KG+GFIT E E+G+D+F+H S +A+ G +L +GQ VT+D Sbjct: 1 MNKGTVKWFNSQKGFGFITNE---ENGEDIFVHFSGIATDGFKSLEDGQSVTFD 51 >gi|294498468|ref|YP_003562168.1| cold shock protein [Bacillus megaterium QM B1551] gi|295703813|ref|YP_003596888.1| cold shock protein [Bacillus megaterium DSM 319] gi|294348405|gb|ADE68734.1| cold shock protein [Bacillus megaterium QM B1551] gi|294801472|gb|ADF38538.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G +KW+N DKG+GFI EG G+DVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MEHGKVKWFNADKGFGFIEREG----GEDVFVHFSAIQGEGFKSLDEGQEVTFDIEQ 53 >gi|255659158|ref|ZP_05404567.1| conserved domain protein [Mitsuokella multacida DSM 20544] gi|260848608|gb|EEX68615.1| conserved domain protein [Mitsuokella multacida DSM 20544] Length = 66 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P+KGYGFI EG GDDVF+H SA+ G L EGQ V ++ V+ A G Sbjct: 3 GKVKWFSPEKGYGFIAREG----GDDVFVHFSAIQDEGFKTLNEGQDVEFEIVEG-ARGP 57 Query: 65 YSAENLK 71 +A +K Sbjct: 58 QAANVIK 64 >gi|295704907|ref|YP_003597982.1| cold shock protein [Bacillus megaterium DSM 319] gi|294802566|gb|ADF39632.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G +KW+N DKG+GFI EG G+DVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MEHGKVKWFNADKGFGFIEREG----GEDVFVHFSAIQGEGFKSLDEGQEVTFDIEQ 53 >gi|194016016|ref|ZP_03054631.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|194012371|gb|EDW21938.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 67 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MEQGTVKWFNAEKGFGFI----EREEGDDVFVHFSAIQGDGFKSLDEGQKVTFDVEQ 53 >gi|146342873|ref|YP_001207921.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278] gi|146195679|emb|CAL79706.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278] Length = 71 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +LTEGQ ++++ V+ D Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFE-VEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KKGK 60 >gi|315641419|ref|ZP_07896492.1| cold shock protein CspA [Enterococcus italicus DSM 15952] gi|315482806|gb|EFU73329.1| cold shock protein CspA [Enterococcus italicus DSM 15952] Length = 72 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KG+GFIT E G DVF+H SA+ G L EGQ VT+D ++D Sbjct: 7 MEQGTVKWFNAEKGFGFITRE----DGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESD 61 >gi|293602670|ref|ZP_06685111.1| CspA family cold shock transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|311109651|ref|YP_003982504.1| cold shock protein CspB [Achromobacter xylosoxidans A8] gi|292818861|gb|EFF77901.1| CspA family cold shock transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|310764340|gb|ADP19789.1| cold shock protein CspB [Achromobacter xylosoxidans A8] Length = 68 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V ++ V++ Sbjct: 1 MAQKGKVKWFNADKGYGFITPD---VGGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56 Query: 61 ANGKYSAE 68 G +AE Sbjct: 57 PKGPQAAE 64 >gi|225181189|ref|ZP_03734635.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168158|gb|EEG76963.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] Length = 66 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI GDDVF+H SA+ S G L EGQ V ++ V + N Sbjct: 2 QGKVKWFNAEKGFGFI----ERSDGDDVFVHFSAIQSEGFKTLEEGQTVEFEVV--EGNR 55 Query: 64 KYSAENLKLVP 74 A N+ +VP Sbjct: 56 GLQAANVTVVP 66 >gi|170746594|ref|YP_001752854.1| cold-shock DNA-binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170653116|gb|ACB22171.1| cold-shock DNA-binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 259 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KWY+P KG+GF++ + G DVF+HRSA++ AGL +L EGQ VT V+ + Sbjct: 195 GTVKWYDPAKGFGFVS---VNDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGRE 251 Query: 65 YSAENLK 71 + N++ Sbjct: 252 AQSINVE 258 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 9/56 (16%) Query: 6 SIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++KW+N +KG+GF+ E GD D FLH AV +AG +L G +T Q Sbjct: 70 TVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHDDLMPGTRLTVTTAQ 119 >gi|26989186|ref|NP_744611.1| cold shock protein CspA [Pseudomonas putida KT2440] gi|148548435|ref|YP_001268537.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida F1] gi|325276815|ref|ZP_08142516.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] gi|24984025|gb|AAN68075.1|AE016439_10 cold shock protein CspA [Pseudomonas putida KT2440] gi|63034352|gb|AAY28469.1| cold shock protein A-2 [Pseudomonas putida] gi|148512493|gb|ABQ79353.1| cold-shock DNA-binding protein family [Pseudomonas putida F1] gi|313499448|gb|ADR60814.1| Cold shock protein capa, fragment-related protein [Pseudomonas putida BIRD-1] gi|324098053|gb|EGB96198.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] Length = 70 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 3/52 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW+N +KGYGFITP G GDD+F+H A+ S G +L EGQ V++ Sbjct: 5 QQGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53 >gi|317130282|ref|YP_004096564.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] gi|315475230|gb|ADU31833.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] Length = 67 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ V ++ V+ Sbjct: 1 MNMQGKVKWFNAEKGFGFIEREG----GDDVFVHFSAIEQEGFKTLEEGQEVEFEIVEG- 55 Query: 61 ANGKYSAENLKL 72 A G ++ +KL Sbjct: 56 ARGPQASNVVKL 67 >gi|257869999|ref|ZP_05649652.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2] gi|257804163|gb|EEV32985.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2] Length = 66 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KG+GFI S E G DVF+H SA+ G L EGQ VT+D ++D Sbjct: 1 MEQGTVKWFNAEKGFGFI----SREDGTDVFVHFSAIQGEGFKTLEEGQAVTFDVEESD 55 >gi|227822821|ref|YP_002826793.1| putative cold shock protein [Sinorhizobium fredii NGR234] gi|227341822|gb|ACP26040.1| putative cold shock protein [Sinorhizobium fredii NGR234] Length = 71 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 5/74 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI PE G D+F+H SAV ++GL L+E Q V++D + D Sbjct: 1 MAETGTVKFFNTDKGFGFIKPE---NGGADIFVHISAVQASGLNGLSENQKVSFD-TEPD 56 Query: 61 ANGK-YSAENLKLV 73 GK A NL++V Sbjct: 57 RRGKGPKAVNLQIV 70 >gi|325571663|ref|ZP_08147113.1| cold-shock domain family protein [Enterococcus casseliflavus ATCC 12755] gi|325155708|gb|EGC67905.1| cold-shock domain family protein [Enterococcus casseliflavus ATCC 12755] Length = 66 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +++G++KW+N DKG+GFIT E G DVF H SA+ + G +L EGQ VT+D Sbjct: 1 MNKGTVKWFNSDKGFGFITG----EDGQDVFAHFSAIQADGFKSLDEGQAVTFD 50 >gi|239636591|ref|ZP_04677593.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239637686|ref|ZP_04678656.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239596711|gb|EEQ79238.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239597946|gb|EEQ80441.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|330684330|gb|EGG96063.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121] gi|330684668|gb|EGG96370.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121] Length = 66 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E G DVF+H SA+A G +L EGQ V +D V+ D Sbjct: 1 MNNGTVKWFNSEKGFGFI----EREDGSDVFVHFSAIAEEGYKSLEEGQKVEFDIVEGD- 55 Query: 62 NGKYSAENLKL 72 G+ +A +K+ Sbjct: 56 RGEQAANVVKM 66 >gi|157964818|ref|YP_001499642.1| cold shock-like protein [Rickettsia massiliae MTU5] gi|157844594|gb|ABV85095.1| Cold shock-like protein [Rickettsia massiliae MTU5] Length = 80 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI E G DVF+H+SAV +AGL +L EGQ V +D + GK Sbjct: 17 GKVKWYNSTKNFGFIEQENG---GKDVFVHKSAVDAAGLHSLEEGQDVIFDL--EEKQGK 71 Query: 65 YSAENLKL 72 A NL++ Sbjct: 72 AYAVNLRM 79 >gi|16262519|ref|NP_435312.1| CspA8 Cold shock family protein [Sinorhizobium meliloti 1021] gi|307300737|ref|ZP_07580512.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307319148|ref|ZP_07598578.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|14523127|gb|AAK64724.1| CspA8 Cold shock family protein [Sinorhizobium meliloti 1021] gi|306895255|gb|EFN26011.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306904271|gb|EFN34856.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 69 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + DVF+H SAV AG+ ++ EGQ + ++ +++ +GK Sbjct: 4 GTVKWFNSTKGFGFIAPD---DGSADVFVHISAVERAGMNSIVEGQKLGFELERDNKSGK 60 Query: 65 YSAENLK 71 SA L+ Sbjct: 61 MSAGQLR 67 >gi|304415296|ref|ZP_07395986.1| cold shock protein [Candidatus Regiella insecticola LSR1] gi|304282851|gb|EFL91324.1| cold shock protein [Candidatus Regiella insecticola LSR1] Length = 71 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 4/65 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 H+G +KW+N KG+GFITPE ++ DVF+H SA+ G L EGQ V++ ++N A Sbjct: 6 HKGQVKWFNESKGFGFITPEDGSK---DVFVHFSAIQDNGFKTLAEGQNVSFS-IENGAK 61 Query: 63 GKYSA 67 G +A Sbjct: 62 GPSAA 66 >gi|238062414|ref|ZP_04607123.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|237884225|gb|EEP73053.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] Length = 67 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFI+P+G G DVF H SA++++G +L E Q V +D Q + Sbjct: 4 GTVKWFNADKGFGFISPDG---GGADVFAHFSAISASGFRSLDENQKVEFDITQGQKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENIR 65 >gi|85704998|ref|ZP_01036098.1| cold shock family protein [Roseovarius sp. 217] gi|149202366|ref|ZP_01879339.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035] gi|85670320|gb|EAQ25181.1| cold shock family protein [Roseovarius sp. 217] gi|149144464|gb|EDM32495.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035] Length = 68 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+G G DVF+H SAV +GL L + Q V ++ +Q +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPDG---GGKDVFVHISAVERSGLTGLADNQKVGFE-LQEGRDGR 59 Query: 65 YSAENLKLV 73 A +L+L+ Sbjct: 60 QMASDLRLL 68 >gi|254380603|ref|ZP_04995969.1| cold shock protein scoF [Streptomyces sp. Mg1] gi|194339514|gb|EDX20480.1| cold shock protein scoF [Streptomyces sp. Mg1] Length = 67 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H SA+ S+G L EGQ+VT+D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSAINSSGFRELQEGQIVTFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|320449421|ref|YP_004201517.1| cold shock protein, CSD family [Thermus scotoductus SA-01] gi|320149590|gb|ADW20968.1| cold shock protein, CSD family [Thermus scotoductus SA-01] Length = 73 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 5/63 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI EG T DVF+H SA+ + G L EG +VT+D V+ Sbjct: 1 MQKGRVKWFNAEKGYGFIEREGDT----DVFVHFSAINAKGFRTLNEGDIVTFD-VEPGK 55 Query: 62 NGK 64 NGK Sbjct: 56 NGK 58 >gi|261408402|ref|YP_003244643.1| cold-shock DNA-binding domain-containing protein [Paenibacillus sp. Y412MC10] gi|315648512|ref|ZP_07901611.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|329929384|ref|ZP_08283132.1| major cold shock protein CspA [Paenibacillus sp. HGF5] gi|261284865|gb|ACX66836.1| cold-shock DNA-binding domain protein [Paenibacillus sp. Y412MC10] gi|315276206|gb|EFU39552.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|328936471|gb|EGG32916.1| major cold shock protein CspA [Paenibacillus sp. HGF5] Length = 65 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N +KGYGFI+ EG G+DVF+H SA+ G +L EGQ V +D + + Sbjct: 2 KGTVKWFNAEKGYGFISVEG----GEDVFVHFSAIQEEGFKSLEEGQAVEFDITEGN 54 >gi|328957137|ref|YP_004374523.1| cold shock protein CspA [Carnobacterium sp. 17-4] gi|328673461|gb|AEB29507.1| cold shock protein CspA [Carnobacterium sp. 17-4] Length = 66 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG G+DVF+H SA+ G +L EGQ V ++ V+ + Sbjct: 1 MEKGTVKWFNAEKGFGFIEVEG----GEDVFVHFSAITGDGFKSLEEGQAVEFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGAQAANVVKL 66 >gi|239946656|ref|ZP_04698409.1| conserved domain protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239920932|gb|EER20956.1| conserved domain protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 70 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI E G DVF+H+SAV +AGL +L EGQ V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQENG---GKDVFVHKSAVDAAGLHSLEEGQDVIFDL--EEKQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAVNLRI 69 >gi|46203051|ref|ZP_00052170.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 263 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KWY+P KG+GF++ + G DVF+HRSA++ AGL +L EGQ VT + V Sbjct: 199 GTVKWYDPAKGFGFVS---VNDGGKDVFVHRSALSRAGLDSLAEGQQVTLNVV 248 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 9/56 (16%) Query: 6 SIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++KW+N +KG+GF+ E GD D FLH AV +AG +L G +T Q Sbjct: 70 TVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQ 119 >gi|330469179|ref|YP_004406922.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] gi|328812150|gb|AEB46322.1| cold-shock DNA-binding domain protein [Verrucosispora maris AB-18-032] Length = 67 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF+H SA+AS+G LTEGQ V +D Q Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GPDVFVHYSAIASSGYRELTEGQKVEFDVTQ 54 >gi|238790450|ref|ZP_04634220.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641] gi|238721476|gb|EEQ13146.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641] Length = 69 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ + A G Sbjct: 5 KGSVKWFNEAKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFE-ITTGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|217969795|ref|YP_002355029.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] gi|217507122|gb|ACK54133.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] Length = 67 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/51 (52%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITPE GDD+F H SA+ G L EGQ VT+D Sbjct: 4 GTVKWFNDSKGFGFITPE---AGGDDLFAHFSAIQGQGFKTLAEGQRVTFD 51 >gi|316932717|ref|YP_004107699.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315600431|gb|ADU42966.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 70 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +LTEGQ ++++ V+ D Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFE-VEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KKGK 60 >gi|92118615|ref|YP_578344.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91801509|gb|ABE63884.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 71 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL L+EGQ VT++ V+ D Sbjct: 1 MSMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVEQAGLTELSEGQRVTFE-VEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KKGK 60 >gi|288556195|ref|YP_003428130.1| major cold shock protein [Bacillus pseudofirmus OF4] gi|288547355|gb|ADC51238.1| major cold shock protein [Bacillus pseudofirmus OF4] Length = 66 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ VT++ V+ + Sbjct: 3 EGTVKWFNAEKGFGFIEREG----GDDVFVHFSAIQIDGFKTLEEGQAVTFEIVEGN 55 >gi|124514284|gb|EAY55798.1| cold shock protein [Leptospirillum rubarum] Length = 52 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 RG +KW+N +KGYGFI S E+G+D+F+H SA+ +G L EGQLV ++ Sbjct: 3 RGHVKWFNANKGYGFI----SQENGEDIFVHYSAIGGSGFKTLEEGQLVEFE 50 >gi|16974803|pdb|1HZA|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability gi|16974804|pdb|1HZA|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability Length = 67 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + RG +KW+N +KGYGFI EG G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQRGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN 55 >gi|288556391|ref|YP_003428326.1| cold-shock DNA-binding protein family protein [Bacillus pseudofirmus OF4] gi|288547551|gb|ADC51434.1| cold-shock DNA-binding protein family protein [Bacillus pseudofirmus OF4] Length = 66 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N +KG+GFI EG GDDVF+H SA+ G +L EGQ VT++ Q Sbjct: 1 MEQGTVKWFNAEKGFGFIEIEG----GDDVFVHFSAIQGEGFKSLDEGQKVTFETEQ 53 >gi|126725654|ref|ZP_01741496.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2150] gi|126704858|gb|EBA03949.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2150] Length = 68 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE + G DVF+H SAV AGL L++ Q V YD ++ +G+ Sbjct: 4 GTVKWFNQTKGFGFIAPE---DGGSDVFVHISAVERAGLTGLSDNQKVQYD-LEEGRDGR 59 Query: 65 YSAENLKL 72 A N+ L Sbjct: 60 SLAANIVL 67 >gi|116493183|ref|YP_804918.1| cold-shock DNA-binding protein family protein [Pediococcus pentosaceus ATCC 25745] gi|116103333|gb|ABJ68476.1| cold-shock DNA-binding protein family [Pediococcus pentosaceus ATCC 25745] Length = 66 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKG+GFIT E G DVF+H SA+ G L EGQ V++D ++D Sbjct: 1 MEQGTVKWFNADKGFGFIT----REDGSDVFVHFSAIQGDGFKTLEEGQAVSFDVEESD 55 >gi|319944075|ref|ZP_08018354.1| cold shock transcription regulator protein [Lautropia mirabilis ATCC 51599] gi|319742652|gb|EFV95060.1| cold shock transcription regulator protein [Lautropia mirabilis ATCC 51599] Length = 68 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ E G+D+F H S+V + G L EGQ V++D VQ Sbjct: 4 GTVKWFNDAKGFGFITPD---EGGEDLFAHFSSVQTQGFKTLKEGQKVSFDVVQ 54 >gi|313884810|ref|ZP_07818562.1| major cold shock protein CspA [Eremococcus coleocola ACS-139-V-Col8] gi|312619501|gb|EFR30938.1| major cold shock protein CspA [Eremococcus coleocola ACS-139-V-Col8] Length = 66 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI +G DDVF+H SA+ S G L EGQ V++D +++ A G Sbjct: 3 EGKVKWFNADKGFGFIERDGE----DDVFVHFSAIQSEGFKTLEEGQAVSFD-IEDGARG 57 Query: 64 KYSAENLKL 72 +A K+ Sbjct: 58 PQAANVEKI 66 >gi|307313742|ref|ZP_07593360.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|306899232|gb|EFN29869.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 67 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKG+GFITPE G DVF+H SA+ G +L EG V+Y+ Q+ GK Sbjct: 4 GTVKFFNDDKGFGFITPE---NGGTDVFVHVSALQRGG--SLKEGDKVSYEVGQDRKTGK 58 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 59 SKAENVSVL 67 >gi|228923915|ref|ZP_04087192.1| hypothetical protein bthur0011_48890 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835714|gb|EEM81078.1| hypothetical protein bthur0011_48890 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 65 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + A G Sbjct: 2 QGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGFKSLEEGQQVEFDIV-DGARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|163859299|ref|YP_001633597.1| cold shock protein [Bordetella petrii DSM 12804] gi|163263027|emb|CAP45330.1| cold shock protein [Bordetella petrii] Length = 68 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 MV +G +KW+N DKG+GFITP+ G DVF H SA+ G +L EGQ V ++ V++ Sbjct: 1 MVQKGKVKWFNADKGFGFITPDA---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56 Query: 61 ANGKYSAE 68 G +A+ Sbjct: 57 PKGPQAAD 64 >gi|332286174|ref|YP_004418085.1| putative cold shock-like protein [Pusillimonas sp. T7-7] gi|330430127|gb|AEC21461.1| putative cold shock-like protein [Pusillimonas sp. T7-7] Length = 68 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N DKG+GFITP+ G DVF H SA+ G +L EGQ V ++ V++ Sbjct: 1 MAQKGKVKWFNADKGFGFITPDA---GGTDVFAHFSAIEGRGYRSLNEGQEVEFE-VKDG 56 Query: 61 ANGKYSAE 68 G +AE Sbjct: 57 PKGPQAAE 64 >gi|260433151|ref|ZP_05787122.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416979|gb|EEX10238.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 68 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V+Y+ +++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVSYE-LEDGRDGR 59 Query: 65 YSAENLK 71 A +LK Sbjct: 60 QMAADLK 66 >gi|16127133|ref|NP_421697.1| cold-shock domain-contain protein [Caulobacter crescentus CB15] gi|221235933|ref|YP_002518370.1| cold shock protein [Caulobacter crescentus NA1000] gi|13424521|gb|AAK24865.1| cold-shock domain family protein [Caulobacter crescentus CB15] gi|220965106|gb|ACL96462.1| cold shock protein [Caulobacter crescentus NA1000] Length = 69 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G D+F+H SAV +GL +L EGQ ++Y+ + +GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---NGGADIFVHISAVERSGLGSLNEGQKISYEPEVDRRSGK 60 Query: 65 YSAENLK 71 SA L+ Sbjct: 61 TSAGQLQ 67 >gi|16974805|pdb|1HZB|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability gi|16974806|pdb|1HZB|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability Length = 66 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + RG +KW+N +KGYGFI EG G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQRGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN 55 >gi|81428382|ref|YP_395382.1| cold shock protein CspA family protein [Lactobacillus sakei subsp. sakei 23K] gi|78610024|emb|CAI55072.1| Similar to cold shock protein, CspA family [Lactobacillus sakei subsp. sakei 23K] Length = 66 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N +KG+GFI+ EG DD+F+H SA+ G +L EGQ V +D V+ Sbjct: 1 MEKGTVKWFNNEKGFGFISVEGQ----DDIFVHFSAIQDEGFKSLEEGQAVEFDIVE 53 >gi|312795290|ref|YP_004028212.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] gi|312167065|emb|CBW74068.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] Length = 98 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFITP+ E G+D+F H SA+ G L EGQ V+++ VQ Sbjct: 34 GTVKWFNDAKGYGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVSFEVVQ 84 >gi|42784343|ref|NP_981590.1| cold shock protein CspC [Bacillus cereus ATCC 10987] gi|206976819|ref|ZP_03237722.1| cold shock protein CspC [Bacillus cereus H3081.97] gi|217962672|ref|YP_002341246.1| cold shock protein CspC [Bacillus cereus AH187] gi|222098643|ref|YP_002532701.1| cold shock protein cspc [Bacillus cereus Q1] gi|42740274|gb|AAS44198.1| cold shock protein CspC [Bacillus cereus ATCC 10987] gi|206744954|gb|EDZ56358.1| cold shock protein CspC [Bacillus cereus H3081.97] gi|217063489|gb|ACJ77739.1| cold shock protein CspC [Bacillus cereus AH187] gi|221242702|gb|ACM15412.1| cold shock protein CspC [Bacillus cereus Q1] gi|324329136|gb|ADY24396.1| cold shock protein CspC [Bacillus thuringiensis serovar finitimus YBT-020] Length = 67 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V+ Sbjct: 1 MNMQGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVEG- 55 Query: 61 ANGKYSAENLKL 72 A G +A +KL Sbjct: 56 ARGPQAANVVKL 67 >gi|332976448|gb|EGK13296.1| cold shock protein CspA [Desmospora sp. 8437] Length = 77 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFI EG DDVF+H SA+ S G +L EG V+++ VQ + G Sbjct: 14 EGTVKWFNADKGFGFIEVEGR----DDVFVHFSAIQSEGFKSLDEGDKVSFEIVQGN-RG 68 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 69 DQAANVVKL 77 >gi|150377277|ref|YP_001313872.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150031824|gb|ABR63939.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] Length = 69 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + DVF+H SAV AG+ ++ EGQ + ++ +++ +GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---DGSADVFVHISAVERAGMNSIVEGQKLGFELERDNKSGK 60 Query: 65 YSAENLK 71 SA L+ Sbjct: 61 MSAGQLR 67 >gi|39995688|ref|NP_951639.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA] gi|39982452|gb|AAR33912.1| cold-shock domain family protein [Geobacter sulfurreducens PCA] gi|298504699|gb|ADI83422.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens KN400] Length = 66 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KGYGFI E+G+DVF+H S++ G L EGQ VT+D VQ A G Sbjct: 3 KGVVKWFNDSKGYGFI----EQENGEDVFVHFSSIQGDGFKTLVEGQAVTFDVVQG-AKG 57 Query: 64 KYSAENLK 71 +A +K Sbjct: 58 LQAANVMK 65 >gi|261341246|ref|ZP_05969104.1| putative cold shock protein [Enterobacter cancerogenus ATCC 35316] gi|288316550|gb|EFC55488.1| putative cold shock protein [Enterobacter cancerogenus ATCC 35316] Length = 69 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + N A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVMAL 69 >gi|289209718|ref|YP_003461784.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. K90mix] gi|288945349|gb|ADC73048.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. K90mix] Length = 67 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N KG+GFITP+ + G DVF+H SA++ +G L EGQ V+++ +Q A Sbjct: 1 MNTGVVKWFNESKGFGFITPD---DGGKDVFVHFSAISGSGFKTLAEGQKVSFE-IQETA 56 Query: 62 NGKYSAENLKL 72 G + E L Sbjct: 57 KGLAAGEVTAL 67 >gi|254461497|ref|ZP_05074913.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium HTCC2083] gi|206678086|gb|EDZ42573.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacteraceae bacterium HTCC2083] Length = 68 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G ++ DVF+H SAV +GL L + Q VT+D ++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERSGLTGLADNQKVTFD-IEPGRDGR 59 Query: 65 YSAENLKL 72 +A N+ L Sbjct: 60 EAAINIAL 67 >gi|84687901|ref|ZP_01015768.1| cold shock family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664095|gb|EAQ10592.1| cold shock family protein [Rhodobacterales bacterium HTCC2654] Length = 68 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H SAV AG+ L + Q V+Y+ + +G+ Sbjct: 4 GTVKWFNATKGYGFIAPD---DGGKDVFVHISAVERAGMTGLADNQKVSYEMIPG-RDGR 59 Query: 65 YSAENLKLV 73 SA +LK + Sbjct: 60 ESAGDLKAL 68 >gi|229544336|ref|ZP_04433395.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] gi|229325475|gb|EEN91151.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] Length = 67 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KGYGFI EG GDDVF+H +A+ G L EGQ V++D V+ + Sbjct: 1 MQNGKVKWFNNEKGYGFIEVEG----GDDVFVHFTAIQGEGFKTLEEGQAVSFDIVEGN 55 >gi|29375372|ref|NP_814526.1| cold shock domain-contain protein [Enterococcus faecalis V583] gi|227517748|ref|ZP_03947797.1| cold-shock protein [Enterococcus faecalis TX0104] gi|227554895|ref|ZP_03984942.1| cold-shock protein [Enterococcus faecalis HH22] gi|229546635|ref|ZP_04435360.1| cold-shock protein [Enterococcus faecalis TX1322] gi|229548721|ref|ZP_04437446.1| cold-shock protein [Enterococcus faecalis ATCC 29200] gi|255971235|ref|ZP_05421821.1| cold-shock protein [Enterococcus faecalis T1] gi|255973859|ref|ZP_05424445.1| cold-shock protein [Enterococcus faecalis T2] gi|256617665|ref|ZP_05474511.1| cold-shock protein [Enterococcus faecalis ATCC 4200] gi|256761545|ref|ZP_05502125.1| cold-shock protein [Enterococcus faecalis T3] gi|256854357|ref|ZP_05559721.1| cold shock domain-contain protein [Enterococcus faecalis T8] gi|256957355|ref|ZP_05561526.1| cold-shock protein [Enterococcus faecalis DS5] gi|256959910|ref|ZP_05564081.1| cold-shock protein [Enterococcus faecalis Merz96] gi|256964386|ref|ZP_05568557.1| cold-shock protein [Enterococcus faecalis HIP11704] gi|257077649|ref|ZP_05572010.1| cold-shock protein [Enterococcus faecalis JH1] gi|257081040|ref|ZP_05575401.1| cold shock domain-containing protein [Enterococcus faecalis E1Sol] gi|257083701|ref|ZP_05578062.1| cold shock domain-containing protein [Enterococcus faecalis Fly1] gi|257086135|ref|ZP_05580496.1| cold-shock protein [Enterococcus faecalis D6] gi|257089207|ref|ZP_05583568.1| cold-shock protein [Enterococcus faecalis CH188] gi|257415348|ref|ZP_05592342.1| cold-shock protein [Enterococcus faecalis AR01/DG] gi|257418385|ref|ZP_05595379.1| cold-shock protein [Enterococcus faecalis T11] gi|257421034|ref|ZP_05598024.1| cold shock protein [Enterococcus faecalis X98] gi|293385225|ref|ZP_06631042.1| cold shock protein B [Enterococcus faecalis R712] gi|293388340|ref|ZP_06632852.1| cold shock protein B [Enterococcus faecalis S613] gi|294781498|ref|ZP_06746837.1| cold-shock DNA-binding domain protein [Enterococcus faecalis PC1.1] gi|300859962|ref|ZP_07106050.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11] gi|307270162|ref|ZP_07551479.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX4248] gi|307271388|ref|ZP_07552663.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0855] gi|307276241|ref|ZP_07557370.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX2134] gi|307284456|ref|ZP_07564619.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0860] gi|307289526|ref|ZP_07569472.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0109] gi|307296199|ref|ZP_07576027.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0411] gi|312901759|ref|ZP_07761028.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0470] gi|312904195|ref|ZP_07763358.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0635] gi|312907148|ref|ZP_07766140.1| cold-shock DNA-binding domain protein [Enterococcus faecalis DAPTO 512] gi|312951852|ref|ZP_07770741.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0102] gi|312979273|ref|ZP_07790972.1| cold-shock DNA-binding domain protein [Enterococcus faecalis DAPTO 516] gi|29342832|gb|AAO80596.1| cold shock domain family protein [Enterococcus faecalis V583] gi|227074804|gb|EEI12767.1| cold-shock protein [Enterococcus faecalis TX0104] gi|227175977|gb|EEI56949.1| cold-shock protein [Enterococcus faecalis HH22] gi|229306158|gb|EEN72154.1| cold-shock protein [Enterococcus faecalis ATCC 29200] gi|229308202|gb|EEN74189.1| cold-shock protein [Enterococcus faecalis TX1322] gi|255962253|gb|EET94729.1| cold-shock protein [Enterococcus faecalis T1] gi|255966731|gb|EET97353.1| cold-shock protein [Enterococcus faecalis T2] gi|256597192|gb|EEU16368.1| cold-shock protein [Enterococcus faecalis ATCC 4200] gi|256682796|gb|EEU22491.1| cold-shock protein [Enterococcus faecalis T3] gi|256709917|gb|EEU24961.1| cold shock domain-contain protein [Enterococcus faecalis T8] gi|256947851|gb|EEU64483.1| cold-shock protein [Enterococcus faecalis DS5] gi|256950406|gb|EEU67038.1| cold-shock protein [Enterococcus faecalis Merz96] gi|256954882|gb|EEU71514.1| cold-shock protein [Enterococcus faecalis HIP11704] gi|256985679|gb|EEU72981.1| cold-shock protein [Enterococcus faecalis JH1] gi|256989070|gb|EEU76372.1| cold shock domain-containing protein [Enterococcus faecalis E1Sol] gi|256991731|gb|EEU79033.1| cold shock domain-containing protein [Enterococcus faecalis Fly1] gi|256994165|gb|EEU81467.1| cold-shock protein [Enterococcus faecalis D6] gi|256998019|gb|EEU84539.1| cold-shock protein [Enterococcus faecalis CH188] gi|257157176|gb|EEU87136.1| cold-shock protein [Enterococcus faecalis ARO1/DG] gi|257160213|gb|EEU90173.1| cold-shock protein [Enterococcus faecalis T11] gi|257162858|gb|EEU92818.1| cold shock protein [Enterococcus faecalis X98] gi|291077522|gb|EFE14886.1| cold shock protein B [Enterococcus faecalis R712] gi|291082282|gb|EFE19245.1| cold shock protein B [Enterococcus faecalis S613] gi|294451428|gb|EFG19891.1| cold-shock DNA-binding domain protein [Enterococcus faecalis PC1.1] gi|300850780|gb|EFK78529.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11] gi|306496073|gb|EFM65655.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0411] gi|306499544|gb|EFM68915.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0109] gi|306503264|gb|EFM72517.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0860] gi|306507097|gb|EFM76238.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX2134] gi|306511920|gb|EFM80915.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0855] gi|306513531|gb|EFM82146.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX4248] gi|310626859|gb|EFQ10142.1| cold-shock DNA-binding domain protein [Enterococcus faecalis DAPTO 512] gi|310630150|gb|EFQ13433.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0102] gi|310632460|gb|EFQ15743.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0635] gi|311287931|gb|EFQ66487.1| cold-shock DNA-binding domain protein [Enterococcus faecalis DAPTO 516] gi|311291228|gb|EFQ69784.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0470] gi|315027570|gb|EFT39502.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX2137] gi|315029859|gb|EFT41791.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX4000] gi|315031281|gb|EFT43213.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0017] gi|315035333|gb|EFT47265.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0027] gi|315145280|gb|EFT89296.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX2141] gi|315148239|gb|EFT92255.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX4244] gi|315151651|gb|EFT95667.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0012] gi|315153201|gb|EFT97217.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0031] gi|315154850|gb|EFT98866.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0043] gi|315159935|gb|EFU03952.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0312] gi|315161978|gb|EFU05995.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0645] gi|315164631|gb|EFU08648.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX1302] gi|315167012|gb|EFU11029.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX1341] gi|315170889|gb|EFU14906.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX1342] gi|315174689|gb|EFU18706.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX1346] gi|315573437|gb|EFU85628.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0309B] gi|315578025|gb|EFU90216.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0630] gi|315581320|gb|EFU93511.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0309A] gi|323479972|gb|ADX79411.1| cold shock protein CspC [Enterococcus faecalis 62] gi|327534366|gb|AEA93200.1| cold shock protein B [Enterococcus faecalis OG1RF] gi|329577634|gb|EGG59065.1| cold shock protein CspA [Enterococcus faecalis TX1467] Length = 66 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N DKG+GFIT E G+DVF H SA+ S G L EGQ VT+D Sbjct: 1 MNNGTVKWFNADKGFGFITGE----DGNDVFAHFSAIQSDGFKTLDEGQAVTFD 50 >gi|74095589|emb|CAJ27355.1| strongly similar to cold shock-like protein cspE [Cronobacter sakazakii] Length = 79 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + N A G Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 70 Query: 64 KYSAENLKL 72 +A + L Sbjct: 71 PSAANVIAL 79 >gi|240139725|ref|YP_002964202.1| putative transcriptional regulator, cold shock protein [Methylobacterium extorquens AM1] gi|254562138|ref|YP_003069233.1| transcriptional regulator, cold shock protein [Methylobacterium extorquens DM4] gi|240009699|gb|ACS40925.1| putative transcriptional regulator, cold shock protein [Methylobacterium extorquens AM1] gi|254269416|emb|CAX25382.1| putative transcriptional regulator, cold shock protein [Methylobacterium extorquens DM4] Length = 278 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KWY+P KG+GF++ + G DVF+HRSA++ AGL +L EGQ VT V+ Sbjct: 214 GTVKWYDPAKGFGFVS---VNDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVE 264 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%) Query: 6 SIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++KW+N +KG+GF+ E GD D FLH AV +AG +L G +T Q Sbjct: 81 TVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKG 134 Query: 63 GKYSAEN 69 + +A N Sbjct: 135 PQVTAVN 141 >gi|222152818|ref|YP_002561995.1| cold shock protein [Streptococcus uberis 0140J] gi|222113631|emb|CAR41517.1| cold shock protein [Streptococcus uberis 0140J] Length = 67 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI S E+GDDVF H SA+ S G +L EGQ V +D Q Sbjct: 3 QGTVKWFNAEKGFGFI----SQENGDDVFAHFSAIQSDGFKSLDEGQKVEFDIEQ 53 >gi|218531150|ref|YP_002421966.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|218523453|gb|ACK84038.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] Length = 279 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KWY+P KG+GF++ + G DVF+HRSA++ AGL +L EGQ VT V+ Sbjct: 215 GTVKWYDPAKGFGFVS---VNDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVE 265 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%) Query: 6 SIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++KW+N +KG+GF+ E GD D FLH AV +AG +L G +T Q Sbjct: 81 TVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKG 134 Query: 63 GKYSAEN 69 + +A N Sbjct: 135 PQVTAVN 141 >gi|163852391|ref|YP_001640434.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|163663996|gb|ABY31363.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] Length = 281 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KWY+P KG+GF++ + G DVF+HRSA++ AGL +L EGQ VT V+ Sbjct: 217 GTVKWYDPAKGFGFVS---VNDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVE 267 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%) Query: 6 SIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++KW+N +KG+GF+ E GD D FLH AV +AG +L G +T Q Sbjct: 81 TVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKG 134 Query: 63 GKYSAEN 69 + +A N Sbjct: 135 PQVTAVN 141 >gi|297584713|ref|YP_003700493.1| cold-shock DNA-binding domain-containing protein [Bacillus selenitireducens MLS10] gi|297143170|gb|ADH99927.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens MLS10] Length = 65 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI EG DDVF+H SA+ G L EGQ VT+D Q Sbjct: 3 QGTVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVTFDIEQ 53 >gi|295696398|ref|YP_003589636.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] gi|295412000|gb|ADG06492.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] Length = 65 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI E G DVF+H SA+ G +L EGQLV +D V+ A G Sbjct: 2 QGRVKWFNAEKGYGFI----EREDGGDVFVHFSAIQQDGFKSLEEGQLVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +K+ Sbjct: 57 PQAANVVKV 65 >gi|188582398|ref|YP_001925843.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] gi|179345896|gb|ACB81308.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] Length = 268 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G++KWY+P KG+GF++ + G DVF+HRSA++ AGL +L EGQ VT V+ Sbjct: 204 GTVKWYDPAKGFGFVS---VNDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEG 255 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%) Query: 6 SIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++KW+N +KG+GF+ E GD D FLH AV +AG +L G +T Q Sbjct: 78 TVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKG 131 Query: 63 GKYSAEN 69 + +A N Sbjct: 132 PQVTAVN 138 >gi|126733686|ref|ZP_01749433.1| cold shock protein CspA-related protein, putative [Roseobacter sp. CCS2] gi|126716552|gb|EBA13416.1| cold shock protein CspA-related protein, putative [Roseobacter sp. CCS2] Length = 69 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+G ++ DVF+H SAV +GL L + Q V +D ++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPDGGSK---DVFVHISAVERSGLTGLKDDQKVNFD-IEAGRDGR 59 Query: 65 YSAENLKL 72 SA NL L Sbjct: 60 ESAVNLTL 67 >gi|114768941|ref|ZP_01446567.1| Cold-shock DNA-binding domain protein [alpha proteobacterium HTCC2255] gi|114549858|gb|EAU52739.1| Cold-shock DNA-binding domain protein [alpha proteobacterium HTCC2255] Length = 68 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P + G DVF+H +AV +AGL L + Q V+Y+ + + NGK Sbjct: 4 GTVKWFNGTKGYGFIAP---ADGGADVFVHITAVQAAGLQGLEDDQKVSYELEEGN-NGK 59 Query: 65 YSAENLKL 72 +A N+ L Sbjct: 60 QNATNIAL 67 >gi|28869573|ref|NP_792192.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|71734745|ref|YP_274352.1| cold shock protein CapA [Pseudomonas syringae pv. phaseolicola 1448A] gi|213970497|ref|ZP_03398624.1| cold shock protein CapA [Pseudomonas syringae pv. tomato T1] gi|237801017|ref|ZP_04589478.1| cold shock protein CapA [Pseudomonas syringae pv. oryzae str. 1_6] gi|257486174|ref|ZP_05640215.1| cold shock protein CapA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289623638|ref|ZP_06456592.1| cold shock protein CapA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647144|ref|ZP_06478487.1| cold shock protein CapA [Pseudomonas syringae pv. aesculi str. 2250] gi|298486699|ref|ZP_07004756.1| cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301384172|ref|ZP_07232590.1| cold shock protein CapA [Pseudomonas syringae pv. tomato Max13] gi|302063987|ref|ZP_07255528.1| cold shock protein CapA [Pseudomonas syringae pv. tomato K40] gi|302132645|ref|ZP_07258635.1| cold shock protein CapA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852815|gb|AAO55887.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|71555298|gb|AAZ34509.1| cold shock protein CapA [Pseudomonas syringae pv. phaseolicola 1448A] gi|213924668|gb|EEB58236.1| cold shock protein CapA [Pseudomonas syringae pv. tomato T1] gi|298158782|gb|EFH99845.1| cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324300|gb|EFW80379.1| cold shock protein CapA [Pseudomonas syringae pv. glycinea str. B076] gi|320328578|gb|EFW84580.1| cold shock protein CapA [Pseudomonas syringae pv. glycinea str. race 4] gi|330888313|gb|EGH20974.1| cold shock protein CapA [Pseudomonas syringae pv. mori str. 301020] gi|331016141|gb|EGH96197.1| cold shock protein CapA [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331023874|gb|EGI03931.1| cold shock protein CapA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 70 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ Sbjct: 7 GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53 >gi|241554075|ref|YP_002979288.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863381|gb|ACS61043.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 67 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKG+GFITPE G DVF+H SA+ G +L EG V+++ Q+ GK Sbjct: 4 GTVKFFNDDKGFGFITPE---NGGQDVFVHVSALQRGG--SLREGDKVSFEVGQDRKTGK 58 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 59 SKAENVSVL 67 >gi|27382579|ref|NP_774108.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27355751|dbj|BAC52733.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 71 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +L EGQ +T++ V+ D Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLAEGQRITFE-VEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KKGK 60 >gi|229591581|ref|YP_002873700.1| major cold shock protein [Pseudomonas fluorescens SBW25] gi|229363447|emb|CAY50649.1| major cold shock protein [Pseudomonas fluorescens SBW25] Length = 70 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ Sbjct: 7 GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53 >gi|83942901|ref|ZP_00955361.1| cold shock family protein [Sulfitobacter sp. EE-36] gi|83954075|ref|ZP_00962795.1| cold shock family protein [Sulfitobacter sp. NAS-14.1] gi|83841112|gb|EAP80282.1| cold shock family protein [Sulfitobacter sp. NAS-14.1] gi|83845909|gb|EAP83786.1| cold shock family protein [Sulfitobacter sp. EE-36] Length = 68 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PEG G DVF+H SAV +GL L + Q V+++ + +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPEG---GGSDVFVHISAVERSGLTGLADEQKVSFEMSEG-RDGR 59 Query: 65 YSAENLKLV 73 A +L+L+ Sbjct: 60 QMATDLELL 68 >gi|326384649|ref|ZP_08206327.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] gi|326196616|gb|EGD53812.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] Length = 67 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P+ G+DVF+H SA+A +G NL E Q V +D Q Sbjct: 3 QGTVKWFNGEKGFGFIAPD---NGGEDVFVHFSAIAGSGFRNLEEAQRVEFDLEQ 54 >gi|293401962|ref|ZP_06646102.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304620|gb|EFE45869.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 66 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KGYGFIT ++ G DVF+H S++ S G L EGQ V++D V +D Sbjct: 4 GKVKWFNAEKGYGFIT----SDEGKDVFVHYSSIQSDGFRTLEEGQRVSFDVVDSD 55 >gi|225174262|ref|ZP_03728261.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] gi|225170047|gb|EEG78842.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] Length = 65 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFI T G+DVF+H SA+ + G NL EGQ V++D V+ Sbjct: 3 GKVKWFNSDKGFGFI----ETSEGNDVFVHFSAIQAEGFKNLEEGQDVSFDVVE 52 >gi|260597049|ref|YP_003209620.1| cold shock protein CspE [Cronobacter turicensis z3032] gi|260216226|emb|CBA29122.1| Cold shock-like protein cspE [Cronobacter turicensis z3032] Length = 97 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + N A G Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 88 Query: 64 KYSAENLKL 72 +A + L Sbjct: 89 PSAANVIAL 97 >gi|257880622|ref|ZP_05660275.1| cold shock protein CspC [Enterococcus faecium 1,230,933] gi|257883616|ref|ZP_05663269.1| cold shock protein CspC [Enterococcus faecium 1,231,502] gi|261209714|ref|ZP_05924033.1| cold shock protein CspC [Enterococcus faecium TC 6] gi|289567769|ref|ZP_06448041.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF] gi|293556143|ref|ZP_06674737.1| cold-shock protein [Enterococcus faecium E1039] gi|293556264|ref|ZP_06674851.1| cold-shock protein [Enterococcus faecium E1039] gi|293568900|ref|ZP_06680213.1| cold-shock protein [Enterococcus faecium E1071] gi|293572638|ref|ZP_06683609.1| cold-shock protein [Enterococcus faecium E980] gi|294615448|ref|ZP_06695318.1| cold-shock protein [Enterococcus faecium E1636] gi|294615452|ref|ZP_06695321.1| cold-shock protein [Enterococcus faecium E1636] gi|294623464|ref|ZP_06702315.1| cold shock protein [Enterococcus faecium U0317] gi|257814850|gb|EEV43608.1| cold shock protein CspC [Enterococcus faecium 1,230,933] gi|257819274|gb|EEV46602.1| cold shock protein CspC [Enterococcus faecium 1,231,502] gi|260076316|gb|EEW64124.1| cold shock protein CspC [Enterococcus faecium TC 6] gi|289160436|gb|EFD08464.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF] gi|291588333|gb|EFF20168.1| cold-shock protein [Enterococcus faecium E1071] gi|291591688|gb|EFF23328.1| cold-shock protein [Enterococcus faecium E1636] gi|291591694|gb|EFF23333.1| cold-shock protein [Enterococcus faecium E1636] gi|291597125|gb|EFF28325.1| cold shock protein [Enterococcus faecium U0317] gi|291601573|gb|EFF31838.1| cold-shock protein [Enterococcus faecium E1039] gi|291601684|gb|EFF31942.1| cold-shock protein [Enterococcus faecium E1039] gi|291607335|gb|EFF36686.1| cold-shock protein [Enterococcus faecium E980] Length = 65 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N DKG+GFIT E G+DVF H SA+ G +L EGQ VTYD Sbjct: 1 MNNGTVKWFNSDKGFGFITGE----DGNDVFAHFSAIQGEGFKSLDEGQAVTYD 50 >gi|86748304|ref|YP_484800.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris HaA2] gi|86571332|gb|ABD05889.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris HaA2] Length = 70 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M + G++K++N ++GYGFI P+ + G DVF+H +AV AGL +LTEGQ ++++ V+ D Sbjct: 1 MPNTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFE-VEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KKGK 60 >gi|254381183|ref|ZP_04996548.1| cold shock protein scoF [Streptomyces sp. Mg1] gi|254381243|ref|ZP_04996608.1| cold shock protein scoF [Streptomyces sp. Mg1] gi|254381451|ref|ZP_04996815.1| cold shock protein scoF [Streptomyces sp. Mg1] gi|194340093|gb|EDX21059.1| cold shock protein scoF [Streptomyces sp. Mg1] gi|194340153|gb|EDX21119.1| cold shock protein scoF [Streptomyces sp. Mg1] gi|194340360|gb|EDX21326.1| cold shock protein scoF [Streptomyces sp. Mg1] Length = 67 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H SA+ S+G L EGQ+VT+D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSAINSSGFRELQEGQVVTFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|238893691|ref|YP_002918425.1| cold shock protein CspE [Klebsiella pneumoniae NTUH-K2044] gi|238546007|dbj|BAH62358.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 97 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + N A G Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 88 Query: 64 KYSAENLKL 72 +A + L Sbjct: 89 PSAANVIAL 97 >gi|167745412|ref|ZP_02417539.1| hypothetical protein ANACAC_00103 [Anaerostipes caccae DSM 14662] gi|317473040|ref|ZP_07932340.1| cold-shock DNA-binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167655133|gb|EDR99262.1| hypothetical protein ANACAC_00103 [Anaerostipes caccae DSM 14662] gi|316899469|gb|EFV21483.1| cold-shock DNA-binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 67 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N +KGYGFI+ EG GDDVF+H SA++ G L EGQ V+++ + Sbjct: 1 MNTGTVKWFNSEKGYGFISQEG----GDDVFVHFSAISGDGFKTLEEGQQVSFEIAE 53 >gi|152969227|ref|YP_001334336.1| cold shock protein CspE [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156934856|ref|YP_001438772.1| cold shock protein CspE [Cronobacter sakazakii ATCC BAA-894] gi|262041285|ref|ZP_06014496.1| CspA family cold shock transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|296103410|ref|YP_003613556.1| cold shock protein CspE [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|330006059|ref|ZP_08305477.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3] gi|150954076|gb|ABR76106.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156533110|gb|ABU77936.1| hypothetical protein ESA_02704 [Cronobacter sakazakii ATCC BAA-894] gi|259041401|gb|EEW42461.1| CspA family cold shock transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|295057869|gb|ADF62607.1| cold shock protein CspE [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295096620|emb|CBK85710.1| cold shock protein E (CspE) [Enterobacter cloacae subsp. cloacae NCTC 9394] gi|328535997|gb|EGF62410.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3] Length = 69 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + N A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVIAL 69 >gi|2493771|sp|P72188|CAPA_PSEFR RecName: Full=Cold shock protein CapA; AltName: Full=C7.0; AltName: Full=Cold acclimation protein A gi|1513079|gb|AAC45996.1| cold acclimation protein A [Pseudomonas fragi] Length = 64 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 3/52 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ Sbjct: 5 QSGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53 >gi|224475930|ref|YP_002633536.1| putative cold-shock protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420537|emb|CAL27351.1| putative cold-shock protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 67 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E+GDDVF+H SA+ G L EGQ V +D V+ D Sbjct: 1 MNNGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQGDGYKTLEEGQSVDFDIVEGD- 55 Query: 62 NGKYSAENLKL 72 G+ +A +K+ Sbjct: 56 RGEQAANVVKM 66 >gi|229032808|ref|ZP_04188764.1| hypothetical protein bcere0028_48380 [Bacillus cereus AH1271] gi|228728481|gb|EEL79501.1| hypothetical protein bcere0028_48380 [Bacillus cereus AH1271] Length = 67 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + Sbjct: 1 MNMQGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55 Query: 61 ANGKYSAENLKL 72 A G +A +KL Sbjct: 56 ARGPQAANVIKL 67 >gi|94676996|ref|YP_588711.1| cold shock protein CspE [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220146|gb|ABF14305.1| cold shock-like protein CspE [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 69 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE ++ DVF+H SA+ S G L EGQ V ++ + N A G Sbjct: 5 KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 60 Query: 64 KYSAENLKL 72 +A+ + + Sbjct: 61 PSAADVIAI 69 >gi|15923806|ref|NP_371340.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu50] gi|15926469|ref|NP_374002.1| cold-shock protein C [Staphylococcus aureus subsp. aureus N315] gi|21282499|ref|NP_645587.1| cold-shock protein C [Staphylococcus aureus subsp. aureus MW2] gi|49483048|ref|YP_040272.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49485662|ref|YP_042883.1| putative cold shock protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57650136|ref|YP_185734.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus COL] gi|82750501|ref|YP_416242.1| cold-shock protein C [Staphylococcus aureus RF122] gi|87161313|ref|YP_493477.1| cold shock protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194578|ref|YP_499374.1| hypothetical protein SAOUHSC_00819 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267252|ref|YP_001246195.1| cold-shock DNA-binding domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150393301|ref|YP_001315976.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus JH1] gi|151220973|ref|YP_001331795.1| cold-shock protein CSD family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156979143|ref|YP_001441402.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu3] gi|161509065|ref|YP_001574724.1| cold-shock protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141194|ref|ZP_03565687.1| cold-shock protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316731|ref|ZP_04839944.1| cold shock protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731424|ref|ZP_04865589.1| cold-shock protein C [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732760|ref|ZP_04866925.1| cold-shock protein C [Staphylococcus aureus subsp. aureus TCH130] gi|255005605|ref|ZP_05144206.2| cold shock protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424912|ref|ZP_05601339.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 55/2053] gi|257427580|ref|ZP_05603979.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 65-1322] gi|257430213|ref|ZP_05606596.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 68-397] gi|257432912|ref|ZP_05609272.1| cold-shock protein C [Staphylococcus aureus subsp. aureus E1410] gi|257435816|ref|ZP_05611864.1| cold-shock protein C [Staphylococcus aureus subsp. aureus M876] gi|257794886|ref|ZP_05643865.1| cold shock protein [Staphylococcus aureus A9781] gi|258418202|ref|ZP_05682467.1| cold shock protein [Staphylococcus aureus A9763] gi|258421499|ref|ZP_05684424.1| cold-shock protein [Staphylococcus aureus A9719] gi|258423441|ref|ZP_05686332.1| cold shock protein [Staphylococcus aureus A9635] gi|258439159|ref|ZP_05690203.1| cold-shock protein C [Staphylococcus aureus A9299] gi|258440913|ref|ZP_05690748.1| cold-shock protein DNA-binding [Staphylococcus aureus A8115] gi|258445743|ref|ZP_05693920.1| cold-shock protein C [Staphylococcus aureus A6300] gi|258449556|ref|ZP_05697658.1| cold-shock protein CSD family protein [Staphylococcus aureus A6224] gi|258452159|ref|ZP_05700175.1| cold-shock protein CSD family protein [Staphylococcus aureus A5948] gi|258453956|ref|ZP_05701928.1| cold-shock protein C [Staphylococcus aureus A5937] gi|262050053|ref|ZP_06022910.1| cold-shock protein C [Staphylococcus aureus D30] gi|262053165|ref|ZP_06025326.1| cold-shock protein C [Staphylococcus aureus 930918-3] gi|269202417|ref|YP_003281686.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus ED98] gi|282894625|ref|ZP_06302852.1| cold shock protein cspC [Staphylococcus aureus A8117] gi|282903424|ref|ZP_06311315.1| conserved domain protein [Staphylococcus aureus subsp. aureus C160] gi|282905203|ref|ZP_06313060.1| cold shock protein beta-ribbon CspA family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908183|ref|ZP_06316014.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910439|ref|ZP_06318243.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WBG10049] gi|282913636|ref|ZP_06321425.1| conserved domain protein [Staphylococcus aureus subsp. aureus M899] gi|282916136|ref|ZP_06323899.1| cold shock protein [Staphylococcus aureus subsp. aureus D139] gi|282918587|ref|ZP_06326324.1| cold shock protein [Staphylococcus aureus subsp. aureus C427] gi|282923553|ref|ZP_06331233.1| cold shock-like protein cspC [Staphylococcus aureus subsp. aureus C101] gi|282926148|ref|ZP_06333783.1| cold shock-like protein cspC [Staphylococcus aureus A9765] gi|282926662|ref|ZP_06334292.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A10102] gi|283769955|ref|ZP_06342847.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus H19] gi|283957625|ref|ZP_06375078.1| conserved domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284023816|ref|ZP_06378214.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus 132] gi|293500678|ref|ZP_06666529.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509628|ref|ZP_06668339.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus M809] gi|293524214|ref|ZP_06670901.1| conserved domain protein [Staphylococcus aureus subsp. aureus M1015] gi|294850139|ref|ZP_06790875.1| cold shock protein [Staphylococcus aureus A9754] gi|295406518|ref|ZP_06816324.1| cold shock-like protein cspC [Staphylococcus aureus A8819] gi|295427371|ref|ZP_06820006.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297208480|ref|ZP_06924909.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245243|ref|ZP_06929117.1| cold shock-like protein cspC [Staphylococcus aureus A8796] gi|297590271|ref|ZP_06948910.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8] gi|300912553|ref|ZP_07129996.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus TCH70] gi|304381582|ref|ZP_07364232.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|2226349|gb|AAB61744.1| CspC [Staphylococcus aureus RN4220] gi|13700683|dbj|BAB41980.1| cold-shock protein C [Staphylococcus aureus subsp. aureus N315] gi|14246585|dbj|BAB56978.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu50] gi|21203936|dbj|BAB94635.1| cold-shock protein C [Staphylococcus aureus subsp. aureus MW2] gi|49241177|emb|CAG39856.1| putative cold shock protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244105|emb|CAG42531.1| putative cold shock protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57284322|gb|AAW36416.1| cold shock protein, CSD family [Staphylococcus aureus subsp. aureus COL] gi|82656032|emb|CAI80437.1| cold-shock protein C [Staphylococcus aureus RF122] gi|87127287|gb|ABD21801.1| cold shock protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202136|gb|ABD29946.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740321|gb|ABQ48619.1| cold-shock DNA-binding protein family [Staphylococcus aureus subsp. aureus JH9] gi|149945753|gb|ABR51689.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus JH1] gi|150373773|dbj|BAF67033.1| cold-shock protein CSD family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721278|dbj|BAF77695.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu3] gi|160367874|gb|ABX28845.1| cold-shock protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724824|gb|EES93553.1| cold-shock protein C [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729280|gb|EES98009.1| cold-shock protein C [Staphylococcus aureus subsp. aureus TCH130] gi|257272482|gb|EEV04605.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 55/2053] gi|257275773|gb|EEV07246.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 65-1322] gi|257278990|gb|EEV09601.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 68-397] gi|257282327|gb|EEV12462.1| cold-shock protein C [Staphylococcus aureus subsp. aureus E1410] gi|257285007|gb|EEV15126.1| cold-shock protein C [Staphylococcus aureus subsp. aureus M876] gi|257788858|gb|EEV27198.1| cold shock protein [Staphylococcus aureus A9781] gi|257838995|gb|EEV63474.1| cold shock protein [Staphylococcus aureus A9763] gi|257842425|gb|EEV66849.1| cold-shock protein [Staphylococcus aureus A9719] gi|257846502|gb|EEV70525.1| cold shock protein [Staphylococcus aureus A9635] gi|257847731|gb|EEV71728.1| cold-shock protein C [Staphylococcus aureus A9299] gi|257852427|gb|EEV76348.1| cold-shock protein DNA-binding [Staphylococcus aureus A8115] gi|257855319|gb|EEV78257.1| cold-shock protein C [Staphylococcus aureus A6300] gi|257857064|gb|EEV79963.1| cold-shock protein CSD family protein [Staphylococcus aureus A6224] gi|257860374|gb|EEV83206.1| cold-shock protein CSD family protein [Staphylococcus aureus A5948] gi|257863821|gb|EEV86577.1| cold-shock protein C [Staphylococcus aureus A5937] gi|259158935|gb|EEW44018.1| cold-shock protein C [Staphylococcus aureus 930918-3] gi|259161849|gb|EEW46434.1| cold-shock protein C [Staphylococcus aureus D30] gi|262074707|gb|ACY10680.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus ED98] gi|269940369|emb|CBI48746.1| putative cold shock protein [Staphylococcus aureus subsp. aureus TW20] gi|282314421|gb|EFB44811.1| cold shock-like protein cspC [Staphylococcus aureus subsp. aureus C101] gi|282317721|gb|EFB48093.1| cold shock protein [Staphylococcus aureus subsp. aureus C427] gi|282320084|gb|EFB50431.1| cold shock protein [Staphylococcus aureus subsp. aureus D139] gi|282322668|gb|EFB52990.1| conserved domain protein [Staphylococcus aureus subsp. aureus M899] gi|282325831|gb|EFB56139.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WBG10049] gi|282327848|gb|EFB58130.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331610|gb|EFB61122.1| cold shock protein beta-ribbon CspA family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282591555|gb|EFB96627.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A10102] gi|282592289|gb|EFB97306.1| cold shock-like protein cspC [Staphylococcus aureus A9765] gi|282596379|gb|EFC01340.1| conserved domain protein [Staphylococcus aureus subsp. aureus C160] gi|282762902|gb|EFC03035.1| cold shock protein cspC [Staphylococcus aureus A8117] gi|283460102|gb|EFC07192.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus H19] gi|283470089|emb|CAQ49300.1| conserved domain protein [Staphylococcus aureus subsp. aureus ST398] gi|283791076|gb|EFC29891.1| conserved domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|285816495|gb|ADC36982.1| Cold shock protein CspC [Staphylococcus aureus 04-02981] gi|290921177|gb|EFD98238.1| conserved domain protein [Staphylococcus aureus subsp. aureus M1015] gi|291095683|gb|EFE25944.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467725|gb|EFF10240.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus M809] gi|294822913|gb|EFG39346.1| cold shock protein [Staphylococcus aureus A9754] gi|294968663|gb|EFG44686.1| cold shock-like protein cspC [Staphylococcus aureus A8819] gi|295128759|gb|EFG58390.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886735|gb|EFH25639.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177914|gb|EFH37163.1| cold shock-like protein cspC [Staphylococcus aureus A8796] gi|297576570|gb|EFH95285.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8] gi|298694126|gb|ADI97348.1| cold-shock protein C [Staphylococcus aureus subsp. aureus ED133] gi|300886799|gb|EFK82001.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus TCH70] gi|302332502|gb|ADL22695.1| cold-shock DNA-binding domain protein, CspC [Staphylococcus aureus subsp. aureus JKD6159] gi|302750688|gb|ADL64865.1| cold-shock DNA-binding domain protein, CspC [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339945|gb|EFM05889.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438777|gb|ADQ77848.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus TCH60] gi|315128997|gb|EFT84994.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS03] gi|315194411|gb|EFU24803.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS00] gi|315196274|gb|EFU26628.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS01] gi|320140093|gb|EFW31953.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus MRSA131] gi|320141733|gb|EFW33562.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus MRSA177] gi|323438537|gb|EGA96285.1| cold-shock protein C [Staphylococcus aureus O11] gi|323441972|gb|EGA99609.1| cold-shock protein C [Staphylococcus aureus O46] gi|329313533|gb|AEB87946.1| Cold-shock DNA-binding protein family [Staphylococcus aureus subsp. aureus T0131] gi|329724582|gb|EGG61089.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 21172] gi|329726262|gb|EGG62732.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 21189] gi|329733929|gb|EGG70251.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 21193] Length = 66 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E G DVF+H SA+A G +L EGQ V +D V+ D Sbjct: 1 MNNGTVKWFNAEKGFGFI----EREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGD- 55 Query: 62 NGKYSAENLKL 72 G+ +A +K+ Sbjct: 56 RGEQAANVVKM 66 >gi|126650361|ref|ZP_01722589.1| cold-shock domain family protein [Bacillus sp. B14905] gi|126593011|gb|EAZ86993.1| cold-shock domain family protein [Bacillus sp. B14905] Length = 67 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ VT+D Sbjct: 1 MEKGNVKWFNGEKGFGFIEREG----GDDVFVHFSAIQGEGYKTLKEGQAVTFD 50 >gi|91776492|ref|YP_546248.1| cold-shock DNA-binding protein family protein [Methylobacillus flagellatus KT] gi|91710479|gb|ABE50407.1| cold-shock DNA-binding protein family [Methylobacillus flagellatus KT] Length = 67 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + GDD+F H SA+ AG +L EGQ V++D + Sbjct: 4 GTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVEAGYKSLKEGQRVSFDVTE 54 >gi|29376512|ref|NP_815666.1| cold shock protein CspC [Enterococcus faecalis V583] gi|255972368|ref|ZP_05422954.1| cold-shock protein [Enterococcus faecalis T1] gi|256619465|ref|ZP_05476311.1| cold-shock protein [Enterococcus faecalis ATCC 4200] gi|256853505|ref|ZP_05558875.1| cold shock protein CspC [Enterococcus faecalis T8] gi|256959303|ref|ZP_05563474.1| cold-shock protein [Enterococcus faecalis DS5] gi|256964738|ref|ZP_05568909.1| cold-shock protein [Enterococcus faecalis HIP11704] gi|257079369|ref|ZP_05573730.1| cold-shock protein [Enterococcus faecalis JH1] gi|257087195|ref|ZP_05581556.1| cold-shock protein [Enterococcus faecalis D6] gi|257090271|ref|ZP_05584632.1| cold-shock protein [Enterococcus faecalis CH188] gi|257422222|ref|ZP_05599212.1| cold shock protein [Enterococcus faecalis X98] gi|300860380|ref|ZP_07106467.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11] gi|29343976|gb|AAO81736.1| cold shock protein CspC [Enterococcus faecalis V583] gi|255963386|gb|EET95862.1| cold-shock protein [Enterococcus faecalis T1] gi|256598992|gb|EEU18168.1| cold-shock protein [Enterococcus faecalis ATCC 4200] gi|256711964|gb|EEU27002.1| cold shock protein CspC [Enterococcus faecalis T8] gi|256949799|gb|EEU66431.1| cold-shock protein [Enterococcus faecalis DS5] gi|256955234|gb|EEU71866.1| cold-shock protein [Enterococcus faecalis HIP11704] gi|256987399|gb|EEU74701.1| cold-shock protein [Enterococcus faecalis JH1] gi|256995225|gb|EEU82527.1| cold-shock protein [Enterococcus faecalis D6] gi|256999083|gb|EEU85603.1| cold-shock protein [Enterococcus faecalis CH188] gi|257164046|gb|EEU94006.1| cold shock protein [Enterococcus faecalis X98] gi|300849419|gb|EFK77169.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11] gi|323481125|gb|ADX80564.1| cold shock protein cspC [Enterococcus faecalis 62] gi|329568749|gb|EGG50549.1| major cold shock protein CspA [Enterococcus faecalis TX1467] Length = 66 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N DKG+GFIT E G+DVF H SA+ + G +L EGQ VT+D Sbjct: 1 MNNGTVKWFNSDKGFGFITG----EDGNDVFAHFSAIQADGFKSLEEGQAVTFD 50 >gi|148559223|ref|YP_001258444.1| cold-shock family protein [Brucella ovis ATCC 25840] gi|148370480|gb|ABQ60459.1| cold-shock family protein [Brucella ovis ATCC 25840] Length = 69 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+G I P+ + DVF+H SAV AGL +L EGQ V Y+ V + +GK Sbjct: 4 GTVKFFNSTKGFGSIQPD---DGSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRRSGK 60 Query: 65 YSAENLK 71 +A NL+ Sbjct: 61 SAAANLE 67 >gi|226223965|ref|YP_002758072.1| cold shock protein [Listeria monocytogenes Clip81459] gi|1001878|emb|CAA62903.1| CspA protein [Listeria monocytogenes] gi|225876427|emb|CAS05136.1| Putative cold shock protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|313608931|gb|EFR84686.1| conserved domain protein [Listeria monocytogenes FSL F2-208] Length = 68 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +KG+GFI E+GDDVF+H SA+ G +L EGQ VT+D Sbjct: 3 MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQGDGFKSLDEGQAVTFD 52 >gi|313900176|ref|ZP_07833676.1| cold shock protein CspB [Clostridium sp. HGF2] gi|312955228|gb|EFR36896.1| cold shock protein CspB [Clostridium sp. HGF2] Length = 66 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KGYGFIT ++ G D+F+H S++ S G L EGQ V +D V++D Sbjct: 4 GKVKWFNAEKGYGFIT----SDEGKDIFVHYSSIQSDGFRTLEEGQAVNFDVVESD 55 >gi|90962451|ref|YP_536367.1| cold shock protein [Lactobacillus salivarius UCC118] gi|227891500|ref|ZP_04009305.1| cold shock protein [Lactobacillus salivarius ATCC 11741] gi|301299206|ref|ZP_07205493.1| cold shock protein CspB [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821645|gb|ABE00284.1| Cold shock protein [Lactobacillus salivarius UCC118] gi|227866647|gb|EEJ74068.1| cold shock protein [Lactobacillus salivarius ATCC 11741] gi|300853166|gb|EFK80763.1| cold shock protein CspB [Lactobacillus salivarius ACS-116-V-Col5a] Length = 66 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KG+GFIT E +GDDVF+H +A+ G L EGQ VT+D +D Sbjct: 1 MEQGTVKWFNAEKGFGFITRE----NGDDVFVHFTAIQGEGYKTLEEGQHVTFDVESSD 55 >gi|288555145|ref|YP_003427080.1| cold shock protein [Bacillus pseudofirmus OF4] gi|288546305|gb|ADC50188.1| cold shock protein [Bacillus pseudofirmus OF4] Length = 65 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 5/64 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI EG GDDVF+H SA+ G +L EGQ V+++ ++ A G Sbjct: 3 QGTVKWFNAEKGFGFIEVEG----GDDVFVHFSAIQGEGFKSLEEGQAVSFE-IEQGARG 57 Query: 64 KYSA 67 +A Sbjct: 58 PQAA 61 >gi|227519332|ref|ZP_03949381.1| cold shock protein CspC [Enterococcus faecalis TX0104] gi|227555460|ref|ZP_03985507.1| cold shock protein CspC [Enterococcus faecalis HH22] gi|229545427|ref|ZP_04434152.1| cold shock protein CspC [Enterococcus faecalis TX1322] gi|229549671|ref|ZP_04438396.1| cold shock protein CspC [Enterococcus faecalis ATCC 29200] gi|307268123|ref|ZP_07549510.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|307272817|ref|ZP_07554064.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|307275929|ref|ZP_07557062.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|307295893|ref|ZP_07575725.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|312902769|ref|ZP_07761973.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|312951269|ref|ZP_07770171.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|227073226|gb|EEI11189.1| cold shock protein CspC [Enterococcus faecalis TX0104] gi|227175400|gb|EEI56372.1| cold shock protein CspC [Enterococcus faecalis HH22] gi|229305151|gb|EEN71147.1| cold shock protein CspC [Enterococcus faecalis ATCC 29200] gi|229309463|gb|EEN75450.1| cold shock protein CspC [Enterococcus faecalis TX1322] gi|306496224|gb|EFM65803.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|306507259|gb|EFM76396.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|306510431|gb|EFM79454.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|306515513|gb|EFM84041.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|310630803|gb|EFQ14086.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|310633823|gb|EFQ17106.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|315025996|gb|EFT37928.1| major cold shock protein CspA [Enterococcus faecalis TX2137] gi|315028917|gb|EFT40849.1| major cold shock protein CspA [Enterococcus faecalis TX4000] gi|315033307|gb|EFT45239.1| major cold shock protein CspA [Enterococcus faecalis TX0017] gi|315034545|gb|EFT46477.1| major cold shock protein CspA [Enterococcus faecalis TX0027] gi|315143420|gb|EFT87436.1| major cold shock protein CspA [Enterococcus faecalis TX2141] gi|315147653|gb|EFT91669.1| major cold shock protein CspA [Enterococcus faecalis TX4244] gi|315157261|gb|EFU01278.1| major cold shock protein CspA [Enterococcus faecalis TX0043] gi|315159904|gb|EFU03921.1| major cold shock protein CspA [Enterococcus faecalis TX0312] gi|315161387|gb|EFU05404.1| major cold shock protein CspA [Enterococcus faecalis TX0645] gi|315167485|gb|EFU11502.1| major cold shock protein CspA [Enterococcus faecalis TX1341] gi|315574539|gb|EFU86730.1| major cold shock protein CspA [Enterococcus faecalis TX0309B] gi|315576700|gb|EFU88891.1| major cold shock protein CspA [Enterococcus faecalis TX0630] gi|315581819|gb|EFU94010.1| major cold shock protein CspA [Enterococcus faecalis TX0309A] Length = 73 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N DKG+GFIT E G+DVF H SA+ + G +L EGQ VT+D Sbjct: 8 MNNGTVKWFNSDKGFGFITG----EDGNDVFAHFSAIQADGFKSLEEGQAVTFD 57 >gi|34498661|ref|NP_902876.1| cold shock transcription regulator protein [Chromobacterium violaceum ATCC 12472] gi|34104514|gb|AAQ60872.1| cold shock transcription regulator protein [Chromobacterium violaceum ATCC 12472] Length = 110 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ E GDDVF H S + + G +L E Q V++D V+ Sbjct: 47 GTVKWFNDSKGFGFITPD---EGGDDVFAHFSQINAKGFRSLAENQRVSFDIVE 97 >gi|29827367|ref|NP_822001.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29604466|dbj|BAC68536.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 67 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI EG G DVF+H SA+ SAG L EGQ V +D Q Sbjct: 4 GTVKWFNAEKGFGFIEQEGG---GPDVFVHYSAINSAGFRELQEGQKVNFDVTQ 54 >gi|330810595|ref|YP_004355057.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378703|gb|AEA70053.1| putative Transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 70 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ Sbjct: 7 GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53 >gi|212639316|ref|YP_002315836.1| cold shock protein, CspA family [Anoxybacillus flavithermus WK1] gi|212560796|gb|ACJ33851.1| Cold shock protein, CspA family [Anoxybacillus flavithermus WK1] Length = 66 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI EG GDDVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQNGKVKWFNNEKGYGFIEVEG----GDDVFVHFTAIQGEGYKTLEEGQAVSFEIVQGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|228924740|ref|ZP_04087911.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834917|gb|EEM80385.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 64 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ VT+D Sbjct: 1 MEKGNVKWFNGEKGFGFIEREG----GDDVFVHFSAIQGEGYKTLEEGQAVTFD 50 >gi|26987835|ref|NP_743260.1| cold-shock domain-contain protein [Pseudomonas putida KT2440] gi|104780430|ref|YP_606928.1| cold shock protein CapB [Pseudomonas entomophila L48] gi|148546382|ref|YP_001266484.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida F1] gi|325275204|ref|ZP_08141171.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] gi|24982535|gb|AAN66724.1|AE016300_9 cold-shock domain family protein [Pseudomonas putida KT2440] gi|95109417|emb|CAK14117.1| cold shock protein CapB [Pseudomonas entomophila L48] gi|148510440|gb|ABQ77300.1| cold-shock DNA-binding protein family [Pseudomonas putida F1] gi|313497465|gb|ADR58831.1| CapB [Pseudomonas putida BIRD-1] gi|324099691|gb|EGB97570.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] Length = 69 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N +KGYGFITP +SGDD+F+H A+ + G L EGQ VT+ Sbjct: 7 GVVKWFNDEKGYGFITP----QSGDDLFVHFKAIQADGFKTLKEGQAVTF 52 >gi|290963042|ref|YP_003494224.1| cold shock protein [Streptomyces scabiei 87.22] gi|260652568|emb|CBG75701.1| putative cold shock protein [Streptomyces scabiei 87.22] Length = 96 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H SA+ S+G L EGQ VT+D Q + Sbjct: 33 GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSAINSSGFRELQEGQAVTFDVTQGQKGPQ 89 Query: 65 YSAENL 70 AEN+ Sbjct: 90 --AENI 93 >gi|238060935|ref|ZP_04605644.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|237882746|gb|EEP71574.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] Length = 67 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFITP+G G DVF H SA+ S+G +L E Q V ++ Q + Sbjct: 4 GTVKWFNADKGFGFITPDG---GGADVFAHFSAIQSSGYRSLDENQRVEFEITQGQKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENIR 65 >gi|89256660|ref|YP_514022.1| cold shock protein [Francisella tularensis subsp. holarctica LVS] gi|156502808|ref|YP_001428873.1| cold-shock DNA-binding domain-containing protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010528|ref|ZP_02275459.1| hypothetical protein Ftulh_07407 [Francisella tularensis subsp. holarctica FSC200] gi|254367972|ref|ZP_04983992.1| cold shock protein [Francisella tularensis subsp. holarctica 257] gi|290953400|ref|ZP_06558021.1| cold shock protein [Francisella tularensis subsp. holarctica URFT1] gi|295313361|ref|ZP_06803970.1| cold shock protein [Francisella tularensis subsp. holarctica URFT1] gi|89144491|emb|CAJ79800.1| cold shock protein [Francisella tularensis subsp. holarctica LVS] gi|134253782|gb|EBA52876.1| cold shock protein [Francisella tularensis subsp. holarctica 257] gi|156253411|gb|ABU61917.1| cold-shock DNA-binding domain protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 67 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFI P+ + G DVF+H SAV +AGL +L E + V+++ +N Sbjct: 1 MRQGTVKFFNTSKGFGFIEPQ---DGGKDVFVHISAVENAGLSSLRESEKVSFEVEEN-- 55 Query: 62 NGKYSAENLKLV 73 GK +A N+K + Sbjct: 56 RGKMAAVNIKSI 67 >gi|148360957|ref|YP_001252164.1| cold shock protein CspD [Legionella pneumophila str. Corby] gi|148282730|gb|ABQ56818.1| cold shock protein CspD [Legionella pneumophila str. Corby] Length = 77 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+N KG+GFI PEG G+D+F+H S++ G L GQ VTYD V + Sbjct: 3 RGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLAPGQAVTYDVVNGE 56 >gi|52840671|ref|YP_094470.1| cold shock protein CspD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54296462|ref|YP_122831.1| hypothetical protein lpp0493 [Legionella pneumophila str. Paris] gi|296105977|ref|YP_003617677.1| cold shock protein CspD [Legionella pneumophila 2300/99 Alcoy] gi|52627782|gb|AAU26523.1| cold shock protein CspD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53750247|emb|CAH11641.1| hypothetical protein lpp0493 [Legionella pneumophila str. Paris] gi|295647878|gb|ADG23725.1| cold shock protein CspD [Legionella pneumophila 2300/99 Alcoy] gi|307609235|emb|CBW98700.1| hypothetical protein LPW_05081 [Legionella pneumophila 130b] Length = 77 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+N KG+GFI PEG G+D+F+H S++ G L GQ VTYD V + Sbjct: 3 RGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLVPGQAVTYDVVNGE 56 >gi|312829285|emb|CBX34127.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 66 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E G DVF+H SA+A G +L EGQ V +D V+ D Sbjct: 1 MNNGTVKWFNAEKGFGFI----EREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGD- 55 Query: 62 NGKYSAENLKL 72 G+ +A +K+ Sbjct: 56 RGEQAANVVKI 66 >gi|86358607|ref|YP_470499.1| cold shock protein [Rhizobium etli CFN 42] gi|116253191|ref|YP_769029.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|190892746|ref|YP_001979288.1| cold shock protein [Rhizobium etli CIAT 652] gi|209550323|ref|YP_002282240.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|218663420|ref|ZP_03519350.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771] gi|241205705|ref|YP_002976801.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|86282709|gb|ABC91772.1| cold shock protein [Rhizobium etli CFN 42] gi|115257839|emb|CAK08937.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|190698025|gb|ACE92110.1| cold shock protein [Rhizobium etli CIAT 652] gi|209536079|gb|ACI56014.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240859595|gb|ACS57262.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|327188379|gb|EGE55596.1| cold shock protein [Rhizobium etli CNPAF512] Length = 71 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI P+ G D+F+H SAV ++GL LTE Q V++D + D Sbjct: 1 MAETGTVKFFNTDKGFGFIKPD---RGGADIFVHISAVQASGLAGLTENQKVSFD-TEPD 56 Query: 61 ANGK-YSAENLKL 72 GK A NL++ Sbjct: 57 RRGKGPKAVNLQI 69 >gi|295114004|emb|CBL32641.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76] Length = 66 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N DKG+GFIT E G+D+F H SA+ S G L EGQ VT+D Sbjct: 1 MNNGTVKWFNADKGFGFITGE----DGNDIFAHFSAIQSDGFKTLDEGQAVTFD 50 >gi|188025725|ref|ZP_02959593.2| hypothetical protein PROSTU_01464 [Providencia stuartii ATCC 25827] gi|188020258|gb|EDU58298.1| hypothetical protein PROSTU_01464 [Providencia stuartii ATCC 25827] Length = 81 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ + Sbjct: 17 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIASEGFKTLAEGQKVEFEITE 68 >gi|312144105|ref|YP_003995551.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] gi|311904756|gb|ADQ15197.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] Length = 67 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 MV+ G +KW++ KGYGFI E GDDVF+H SA+ G L+E Q V ++ V+ D Sbjct: 1 MVYTGKVKWFDEKKGYGFI----EREDGDDVFVHFSAIEQEGFKTLSEDQEVEFEIVEGD 56 Query: 61 ANGKYSAENLKLV 73 + AEN+ ++ Sbjct: 57 RGPQ--AENVVVI 67 >gi|91975763|ref|YP_568422.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris BisB5] gi|91682219|gb|ABE38521.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB5] Length = 70 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +LTEGQ ++++ V+ D Sbjct: 1 MSMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFE-VEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KKGK 60 >gi|226943301|ref|YP_002798374.1| Cold shock domain family protein [Azotobacter vinelandii DJ] gi|226718228|gb|ACO77399.1| Cold shock domain family protein [Azotobacter vinelandii DJ] Length = 70 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ V+++ VQ Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIEGTGFKSLKEGQKVSFEAVQ 56 >gi|16800469|ref|NP_470737.1| hypothetical protein lin1401 [Listeria innocua Clip11262] gi|16803404|ref|NP_464889.1| hypothetical protein lmo1364 [Listeria monocytogenes EGD-e] gi|46907590|ref|YP_013979.1| cold-shock domain-contain protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093751|ref|ZP_00231501.1| cold-shock domain family protein [Listeria monocytogenes str. 4b H7858] gi|47095947|ref|ZP_00233550.1| cold-shock domain family protein [Listeria monocytogenes str. 1/2a F6854] gi|116872795|ref|YP_849576.1| cold shock protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217964490|ref|YP_002350168.1| hypothetical protein LMHCC_1207 [Listeria monocytogenes HCC23] gi|224499943|ref|ZP_03668292.1| hypothetical protein LmonF1_09789 [Listeria monocytogenes Finland 1988] gi|224501693|ref|ZP_03670000.1| hypothetical protein LmonFR_04122 [Listeria monocytogenes FSL R2-561] gi|254824577|ref|ZP_05229578.1| cold-shock domain-containing protein [Listeria monocytogenes FSL J1-194] gi|254827625|ref|ZP_05232312.1| cspL [Listeria monocytogenes FSL N3-165] gi|254829879|ref|ZP_05234534.1| cold shock protein [Listeria monocytogenes 10403S] gi|254852588|ref|ZP_05241936.1| cspL [Listeria monocytogenes FSL R2-503] gi|254898471|ref|ZP_05258395.1| cold shock protein [Listeria monocytogenes J0161] gi|254912038|ref|ZP_05262050.1| CspA protein [Listeria monocytogenes J2818] gi|254932321|ref|ZP_05265680.1| cspL [Listeria monocytogenes HPB2262] gi|254936365|ref|ZP_05268062.1| cspL [Listeria monocytogenes F6900] gi|255027593|ref|ZP_05299579.1| cold shock protein [Listeria monocytogenes FSL J2-003] gi|255521546|ref|ZP_05388783.1| cold shock protein [Listeria monocytogenes FSL J1-175] gi|284801749|ref|YP_003413614.1| hypothetical protein LM5578_1503 [Listeria monocytogenes 08-5578] gi|284994891|ref|YP_003416659.1| hypothetical protein LM5923_1456 [Listeria monocytogenes 08-5923] gi|290893527|ref|ZP_06556510.1| cold shock-like protein cspLA [Listeria monocytogenes FSL J2-071] gi|300765396|ref|ZP_07075378.1| cold-shock domain family protein [Listeria monocytogenes FSL N1-017] gi|315303031|ref|ZP_07873741.1| conserved domain protein [Listeria ivanovii FSL F6-596] gi|61221523|sp|P0A355|CSPA_LISMO RecName: Full=Cold shock-like protein CspLA; Short=CspL gi|61221525|sp|P0A356|CSPA_LISIN RecName: Full=Cold shock-like protein CspLA; Short=CspL gi|12054787|emb|CAC20630.1| cold shock protein L [Listeria monocytogenes] gi|16410780|emb|CAC99442.1| cspL [Listeria monocytogenes EGD-e] gi|16413874|emb|CAC96632.1| cspL [Listeria innocua Clip11262] gi|46880858|gb|AAT04156.1| cold-shock domain family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47015693|gb|EAL06623.1| cold-shock domain family protein [Listeria monocytogenes str. 1/2a F6854] gi|47017872|gb|EAL08655.1| cold-shock domain family protein [Listeria monocytogenes str. 4b H7858] gi|116741673|emb|CAK20797.1| cold shock protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217333760|gb|ACK39554.1| conserved domain protein [Listeria monocytogenes HCC23] gi|258600003|gb|EEW13328.1| cspL [Listeria monocytogenes FSL N3-165] gi|258605901|gb|EEW18509.1| cspL [Listeria monocytogenes FSL R2-503] gi|258608956|gb|EEW21564.1| cspL [Listeria monocytogenes F6900] gi|284057311|gb|ADB68252.1| hypothetical protein LM5578_1503 [Listeria monocytogenes 08-5578] gi|284060358|gb|ADB71297.1| hypothetical protein LM5923_1456 [Listeria monocytogenes 08-5923] gi|290556872|gb|EFD90403.1| cold shock-like protein cspLA [Listeria monocytogenes FSL J2-071] gi|293583877|gb|EFF95909.1| cspL [Listeria monocytogenes HPB2262] gi|293590004|gb|EFF98338.1| CspA protein [Listeria monocytogenes J2818] gi|293593815|gb|EFG01576.1| cold-shock domain-containing protein [Listeria monocytogenes FSL J1-194] gi|300513833|gb|EFK40898.1| cold-shock domain family protein [Listeria monocytogenes FSL N1-017] gi|307570946|emb|CAR84125.1| cold-shock family protein [Listeria monocytogenes L99] gi|313619068|gb|EFR90876.1| conserved domain protein [Listeria innocua FSL S4-378] gi|313623888|gb|EFR94003.1| conserved domain protein [Listeria innocua FSL J1-023] gi|313628598|gb|EFR97021.1| conserved domain protein [Listeria ivanovii FSL F6-596] gi|328467502|gb|EGF38571.1| cold shock protein [Listeria monocytogenes 1816] gi|328475078|gb|EGF45866.1| cold shock protein [Listeria monocytogenes 220] gi|332311805|gb|EGJ24900.1| Cold shock-like protein CspLA [Listeria monocytogenes str. Scott A] Length = 66 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +KG+GFI E+GDDVF+H SA+ G +L EGQ VT+D Sbjct: 1 MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQGDGFKSLDEGQAVTFD 50 >gi|167034479|ref|YP_001669710.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida GB-1] gi|166860967|gb|ABY99374.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1] Length = 70 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ Sbjct: 7 GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 53 >gi|296332857|ref|ZP_06875317.1| cold-shock protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673203|ref|YP_003864875.1| cold-shock protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296150137|gb|EFG91026.1| cold-shock protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411447|gb|ADM36566.1| cold-shock protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 67 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI ++GDDVF+H SA+ G +L EGQ VT+D V+ A Sbjct: 1 MEQGTVKWFNAEKGFGFI----ERDNGDDVFVHFSAIQGDGFKSLDEGQKVTFD-VEQGA 55 Query: 62 NGKYSA 67 G +A Sbjct: 56 RGAQAA 61 >gi|293400346|ref|ZP_06644492.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306746|gb|EFE47989.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 67 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +KW+N +KGYGFI S+E G DVF+H S + G +L EGQ VT++ V++D Sbjct: 2 KGKVKWFNAEKGYGFI----SSEDGKDVFVHYSQILQDGYKSLEEGQTVTFEAVESD 54 >gi|229141918|ref|ZP_04270444.1| hypothetical protein bcere0013_50050 [Bacillus cereus BDRD-ST26] gi|229199306|ref|ZP_04325973.1| hypothetical protein bcere0001_48080 [Bacillus cereus m1293] gi|228584166|gb|EEK42317.1| hypothetical protein bcere0001_48080 [Bacillus cereus m1293] gi|228641533|gb|EEK97838.1| hypothetical protein bcere0013_50050 [Bacillus cereus BDRD-ST26] Length = 65 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V+ A G Sbjct: 2 QGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|91784982|ref|YP_560188.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|187925141|ref|YP_001896783.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|209517460|ref|ZP_03266301.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295677450|ref|YP_003605974.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|296157173|ref|ZP_06840009.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|307730770|ref|YP_003907994.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1003] gi|323527133|ref|YP_004229286.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1001] gi|91688936|gb|ABE32136.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] gi|187716335|gb|ACD17559.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|209502114|gb|EEA02129.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295437293|gb|ADG16463.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|295892509|gb|EFG72291.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|307585305|gb|ADN58703.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003] gi|323384135|gb|ADX56226.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001] Length = 68 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ VT++ VQ Sbjct: 4 GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVTFEVVQ 54 >gi|227509828|ref|ZP_03939877.1| CspA family cold shock transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512764|ref|ZP_03942813.1| CspA family cold shock transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227522888|ref|ZP_03952937.1| CspA family cold shock transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227083964|gb|EEI19276.1| CspA family cold shock transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227089917|gb|EEI25229.1| CspA family cold shock transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227190752|gb|EEI70819.1| CspA family cold shock transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 66 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKGYGFIT E+G DVF+H SA+ + G L EGQ VT D + D Sbjct: 1 MEQGTVKWFNGDKGYGFIT----LENGSDVFVHFSAINADGFKTLEEGQKVTLDVEKGD 55 >gi|298292419|ref|YP_003694358.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296928930|gb|ADH89739.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 71 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N +KGYGFI P+ + G DVF+H SAV +GL L EGQ V+++ V+ D Sbjct: 1 MATMGTVKFFNTEKGYGFIRPD---DGGRDVFVHVSAVTRSGLGTLAEGQRVSFE-VEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KRGK 60 >gi|311032516|ref|ZP_07710606.1| major cold shock protein [Bacillus sp. m3-13] Length = 66 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI + GDDVF+H SA+ G +L EGQ VT++ VQ Sbjct: 3 QGTVKWFNAEKGFGFI----ERQDGDDVFVHFSAIQGEGFKSLEEGQSVTFEIVQ 53 >gi|309775820|ref|ZP_07670814.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308916358|gb|EFP62104.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 66 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KGYGFIT ++ G D+F+H S++ S G L EGQ V +D V++D Sbjct: 4 GKVKWFNAEKGYGFIT----SDDGKDIFVHYSSIQSDGFRTLEEGQAVNFDVVESD 55 >gi|213968381|ref|ZP_03396525.1| cold shock domain family protein [Pseudomonas syringae pv. tomato T1] gi|301384647|ref|ZP_07233065.1| cold shock domain family protein [Pseudomonas syringae pv. tomato Max13] gi|302058900|ref|ZP_07250441.1| cold shock domain family protein [Pseudomonas syringae pv. tomato K40] gi|302133013|ref|ZP_07259003.1| cold shock domain family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927019|gb|EEB60570.1| cold shock domain family protein [Pseudomonas syringae pv. tomato T1] Length = 70 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ +G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGSGFKSLKEGQKVTFIAVQ 56 >gi|194337522|ref|YP_002019316.1| cold-shock DNA-binding domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309999|gb|ACF44699.1| cold-shock DNA-binding domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 74 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KG+GFI P+ G DVF+H + + +GL L E V YD V+ Sbjct: 6 MADTGTVKWFNKMKGFGFIIPD---NGGADVFVHINELEKSGLATLNEADKVKYDMVEK- 61 Query: 61 ANGKYSAENLKLV 73 NGK +A N++L+ Sbjct: 62 -NGKVAAGNIQLL 73 >gi|167032005|ref|YP_001667236.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida GB-1] gi|166858493|gb|ABY96900.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1] Length = 70 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDEKGYGFITP----ESGADLFVHFRAIEGNGFKSLKEGQKVTFVAVQ 56 >gi|226312661|ref|YP_002772555.1| cold shock protein [Brevibacillus brevis NBRC 100599] gi|226095609|dbj|BAH44051.1| cold shock protein [Brevibacillus brevis NBRC 100599] Length = 67 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ V ++ VQ Sbjct: 1 MQTNGTVKWFNAEKGFGFIQVEG----GDDVFVHFSAIQGDGFKTLDEGQKVQFNIVQ-- 54 Query: 61 ANGKYSAENL 70 N AEN+ Sbjct: 55 GNRGPQAENV 64 >gi|295107075|emb|CBL04618.1| cold-shock DNA-binding protein family [Gordonibacter pamelaeae 7-10-1-b] Length = 67 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+NP+KGYGFI S G+D+F+H S + G L EGQ V +D V NG Sbjct: 3 EGTVKWFNPEKGYGFI----SQNDGEDLFVHFSEIKMDGFKTLDEGQAVQFD-VTTGQNG 57 Query: 64 KYSAENL 70 K A N+ Sbjct: 58 KLQASNV 64 >gi|257874927|ref|ZP_05654580.1| cold-shock protein [Enterococcus casseliflavus EC20] gi|257809093|gb|EEV37913.1| cold-shock protein [Enterococcus casseliflavus EC20] Length = 66 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ VT+D Sbjct: 1 MNNGTVKWFNADKGFGFITG----EDGNDVFAHFSAIQGEGFKTLEEGQAVTFD 50 >gi|288554127|ref|YP_003426062.1| cold shock protein CspC [Bacillus pseudofirmus OF4] gi|288545287|gb|ADC49170.1| cold shock protein CspC [Bacillus pseudofirmus OF4] Length = 65 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFNAEKGFGFI----EREDGDDVFVHFSAINSEGFKSLDEGQDVEFEIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|229544252|ref|ZP_04433311.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] gi|229325391|gb|EEN91067.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] Length = 67 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI EG GDDVF+H SA+ G L EGQ V++D V+ + Sbjct: 1 MEHGTVKWFNSEKGYGFIEREG----GDDVFVHFSAIQGEGYKTLEEGQKVSFD-VEEGS 55 Query: 62 NGKYSA 67 G +A Sbjct: 56 RGPQAA 61 >gi|170740501|ref|YP_001769156.1| cold-shock DNA-binding domain-containing protein [Methylobacterium sp. 4-46] gi|168194775|gb|ACA16722.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46] Length = 242 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KWY+P KG+GF++ + + G DVF+HRSA+A AGL +L EGQ VT V+ Sbjct: 178 GTVKWYDPAKGFGFVSVK---DGGKDVFVHRSALARAGLDSLAEGQQVTMGVVE 228 Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD---DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++KW+N +KG+GF+ E GD D FLH AV +AG +L G +T Q Sbjct: 64 ATVKWFNKEKGFGFV------ELGDGSGDAFLHIRAVEAAGHADLLPGTRLTVQTAQ 114 >gi|20808157|ref|NP_623328.1| cold shock proteins [Thermoanaerobacter tengcongensis MB4] gi|20516747|gb|AAM24932.1| Cold shock proteins [Thermoanaerobacter tengcongensis MB4] Length = 66 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V ++ VQ A G Sbjct: 3 RGKVKWFNAEKGYGFI----EREDGTDVFVHYSAIEGEGFKTLEEGQAVEFEVVQA-AKG 57 Query: 64 KYSAENLKL 72 +++ KL Sbjct: 58 PQASKVRKL 66 >gi|83858279|ref|ZP_00951801.1| cold-shock domain family protein [Oceanicaulis alexandrii HTCC2633] gi|83853102|gb|EAP90954.1| cold-shock domain family protein [Oceanicaulis alexandrii HTCC2633] Length = 70 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KGYGFI P+ ++ DVF+H SAV AG+ L EGQ ++++ + +GK Sbjct: 4 GIVKWFNSTKGYGFIQPDDGSK---DVFVHASAVERAGMPELKEGQRISFEEEVDKRSGK 60 Query: 65 YSAENL 70 SA +L Sbjct: 61 TSAGSL 66 >gi|30023224|ref|NP_834855.1| cold shock protein [Bacillus cereus ATCC 14579] gi|47567403|ref|ZP_00238116.1| cold shock protein-related protein [Bacillus cereus G9241] gi|47568473|ref|ZP_00239173.1| cold shock protein-related protein [Bacillus cereus G9241] gi|47569297|ref|ZP_00239982.1| cold shock protein-related protein [Bacillus cereus G9241] gi|49188026|ref|YP_031279.1| cold shock protein CspC [Bacillus anthracis str. Sterne] gi|49481145|ref|YP_039179.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140373|ref|YP_086455.1| cold shock protein [Bacillus cereus E33L] gi|65317162|ref|ZP_00390121.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012] gi|75759030|ref|ZP_00739138.1| Cold shock protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118480228|ref|YP_897379.1| cold-shock DNA-binding protein family protein [Bacillus thuringiensis str. Al Hakam] gi|163942875|ref|YP_001647759.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|165869975|ref|ZP_02214632.1| cold shock protein CspC [Bacillus anthracis str. A0488] gi|167635267|ref|ZP_02393582.1| cold shock protein CspC [Bacillus anthracis str. A0442] gi|167640473|ref|ZP_02398736.1| cold shock protein CspC [Bacillus anthracis str. A0193] gi|170687914|ref|ZP_02879127.1| cold shock protein CspC [Bacillus anthracis str. A0465] gi|170707764|ref|ZP_02898215.1| cold shock protein CspC [Bacillus anthracis str. A0389] gi|177653014|ref|ZP_02935341.1| cold shock protein CspC [Bacillus anthracis str. A0174] gi|190567802|ref|ZP_03020714.1| cold shock protein CspC [Bacillus anthracis Tsiankovskii-I] gi|196032913|ref|ZP_03100326.1| cold shock protein CspC [Bacillus cereus W] gi|196045641|ref|ZP_03112871.1| cold shock protein CspC [Bacillus cereus 03BB108] gi|206970208|ref|ZP_03231161.1| cold shock protein CspC [Bacillus cereus AH1134] gi|218906366|ref|YP_002454200.1| cold shock protein CspC [Bacillus cereus AH820] gi|225867154|ref|YP_002752532.1| cold shock protein CspC [Bacillus cereus 03BB102] gi|228903664|ref|ZP_04067784.1| hypothetical protein bthur0014_48220 [Bacillus thuringiensis IBL 4222] gi|228930192|ref|ZP_04093201.1| hypothetical protein bthur0010_48740 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936477|ref|ZP_04099275.1| hypothetical protein bthur0009_49140 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228942325|ref|ZP_04104864.1| hypothetical protein bthur0008_49550 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228948909|ref|ZP_04111182.1| hypothetical protein bthur0007_50310 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228961427|ref|ZP_04123040.1| hypothetical protein bthur0005_48710 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228975255|ref|ZP_04135813.1| hypothetical protein bthur0003_50020 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981893|ref|ZP_04142188.1| hypothetical protein bthur0002_50520 [Bacillus thuringiensis Bt407] gi|228988414|ref|ZP_04148505.1| hypothetical protein bthur0001_50690 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229014358|ref|ZP_04171477.1| hypothetical protein bmyco0001_47610 [Bacillus mycoides DSM 2048] gi|229082403|ref|ZP_04214866.1| hypothetical protein bcere0023_50200 [Bacillus cereus Rock4-2] gi|229094285|ref|ZP_04225361.1| hypothetical protein bcere0021_49920 [Bacillus cereus Rock3-42] gi|229124697|ref|ZP_04253878.1| hypothetical protein bcere0016_49780 [Bacillus cereus 95/8201] gi|229130436|ref|ZP_04259393.1| hypothetical protein bcere0015_48700 [Bacillus cereus BDRD-Cer4] gi|229147720|ref|ZP_04276063.1| hypothetical protein bcere0012_48450 [Bacillus cereus BDRD-ST24] gi|229153345|ref|ZP_04281523.1| hypothetical protein bcere0011_48750 [Bacillus cereus m1550] gi|229175861|ref|ZP_04303359.1| hypothetical protein bcere0006_49320 [Bacillus cereus MM3] gi|229187401|ref|ZP_04314544.1| hypothetical protein bcere0004_49360 [Bacillus cereus BGSC 6E1] gi|229193438|ref|ZP_04320385.1| hypothetical protein bcere0002_50820 [Bacillus cereus ATCC 10876] gi|229602080|ref|YP_002869410.1| cold shock protein CspC [Bacillus anthracis str. A0248] gi|254686386|ref|ZP_05150245.1| cold shock protein CspC [Bacillus anthracis str. CNEVA-9066] gi|254744321|ref|ZP_05202001.1| cold shock protein CspC [Bacillus anthracis str. Kruger B] gi|254755619|ref|ZP_05207652.1| cold shock protein CspC [Bacillus anthracis str. Vollum] gi|254757074|ref|ZP_05209102.1| cold shock protein CspC [Bacillus anthracis str. Australia 94] gi|296505610|ref|YP_003667310.1| cold shock protein [Bacillus thuringiensis BMB171] gi|29898784|gb|AAP12056.1| Cold shock protein [Bacillus cereus ATCC 14579] gi|47554068|gb|EAL12434.1| cold shock protein-related protein [Bacillus cereus G9241] gi|47554864|gb|EAL13215.1| cold shock protein-related protein [Bacillus cereus G9241] gi|47556024|gb|EAL14362.1| cold shock protein-related protein [Bacillus cereus G9241] gi|49181953|gb|AAT57329.1| cold shock protein CspC [Bacillus anthracis str. Sterne] gi|49332701|gb|AAT63347.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973842|gb|AAU15392.1| cold shock protein [Bacillus cereus E33L] gi|74493496|gb|EAO56604.1| Cold shock protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118419453|gb|ABK87872.1| cold-shock DNA-binding protein family [Bacillus thuringiensis str. Al Hakam] gi|163865072|gb|ABY46131.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] gi|164714298|gb|EDR19818.1| cold shock protein CspC [Bacillus anthracis str. A0488] gi|167511516|gb|EDR86899.1| cold shock protein CspC [Bacillus anthracis str. A0193] gi|167529310|gb|EDR92062.1| cold shock protein CspC [Bacillus anthracis str. A0442] gi|170127321|gb|EDS96197.1| cold shock protein CspC [Bacillus anthracis str. A0389] gi|170668023|gb|EDT18773.1| cold shock protein CspC [Bacillus anthracis str. A0465] gi|172081789|gb|EDT66859.1| cold shock protein CspC [Bacillus anthracis str. A0174] gi|190561218|gb|EDV15191.1| cold shock protein CspC [Bacillus anthracis Tsiankovskii-I] gi|195994342|gb|EDX58297.1| cold shock protein CspC [Bacillus cereus W] gi|196023472|gb|EDX62149.1| cold shock protein CspC [Bacillus cereus 03BB108] gi|206734785|gb|EDZ51954.1| cold shock protein CspC [Bacillus cereus AH1134] gi|218536289|gb|ACK88687.1| cold shock protein CspC [Bacillus cereus AH820] gi|225789362|gb|ACO29579.1| cold shock protein CspC [Bacillus cereus 03BB102] gi|228589970|gb|EEK47842.1| hypothetical protein bcere0002_50820 [Bacillus cereus ATCC 10876] gi|228596105|gb|EEK53782.1| hypothetical protein bcere0004_49360 [Bacillus cereus BGSC 6E1] gi|228607594|gb|EEK64918.1| hypothetical protein bcere0006_49320 [Bacillus cereus MM3] gi|228629949|gb|EEK86600.1| hypothetical protein bcere0011_48750 [Bacillus cereus m1550] gi|228635733|gb|EEK92220.1| hypothetical protein bcere0012_48450 [Bacillus cereus BDRD-ST24] gi|228653031|gb|EEL08912.1| hypothetical protein bcere0015_48700 [Bacillus cereus BDRD-Cer4] gi|228658792|gb|EEL14451.1| hypothetical protein bcere0016_49780 [Bacillus cereus 95/8201] gi|228689138|gb|EEL42961.1| hypothetical protein bcere0021_49920 [Bacillus cereus Rock3-42] gi|228700835|gb|EEL53358.1| hypothetical protein bcere0023_50200 [Bacillus cereus Rock4-2] gi|228746958|gb|EEL96842.1| hypothetical protein bmyco0001_47610 [Bacillus mycoides DSM 2048] gi|228771270|gb|EEM19745.1| hypothetical protein bthur0001_50690 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778005|gb|EEM26277.1| hypothetical protein bthur0002_50520 [Bacillus thuringiensis Bt407] gi|228784534|gb|EEM32555.1| hypothetical protein bthur0003_50020 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228798241|gb|EEM45241.1| hypothetical protein bthur0005_48710 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228810665|gb|EEM57013.1| hypothetical protein bthur0007_50310 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228817369|gb|EEM63455.1| hypothetical protein bthur0008_49550 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228823309|gb|EEM69143.1| hypothetical protein bthur0009_49140 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829477|gb|EEM75105.1| hypothetical protein bthur0010_48740 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228855932|gb|EEN00472.1| hypothetical protein bthur0014_48220 [Bacillus thuringiensis IBL 4222] gi|229266488|gb|ACQ48125.1| cold shock protein CspC [Bacillus anthracis str. A0248] gi|296326662|gb|ADH09590.1| cold shock protein [Bacillus thuringiensis BMB171] gi|326942978|gb|AEA18874.1| cold shock protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 67 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + Sbjct: 1 MNMQGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55 Query: 61 ANGKYSAENLKL 72 A G +A +KL Sbjct: 56 ARGPQAANVVKL 67 >gi|73918922|sp|Q5X9L4|CSPA_STRP6 RecName: Full=Major cold shock protein Length = 67 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI STE+G DVF H SA+ ++G L EGQ V +D Sbjct: 3 QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTSGFKTLEEGQKVAFD 50 >gi|323492820|ref|ZP_08097962.1| cold-shock DNA-binding domain-containing protein [Vibrio brasiliensis LMG 20546] gi|323312891|gb|EGA66013.1| cold-shock DNA-binding domain-containing protein [Vibrio brasiliensis LMG 20546] Length = 70 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFITPE G DVF+H A+AS G L EGQ V+++ Q Sbjct: 7 GIVKWFNEEKGFGFITPE---NGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQ 57 >gi|254447090|ref|ZP_05060557.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium HTCC5015] gi|198263229|gb|EDY87507.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium HTCC5015] Length = 68 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KG+GFI P TE GDD+F+H SA+ G L EG VT++ V+ Sbjct: 1 MATAGTVKWFNNAKGFGFIVP---TEGGDDIFVHYSAIIGDGFKTLVEGDSVTFE-VEEG 56 Query: 61 ANGKYSAENLK 71 GK + +K Sbjct: 57 PKGKLAQNVVK 67 >gi|291459899|ref|ZP_06599289.1| conserved domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291417240|gb|EFE90959.1| conserved domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 65 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW+N KGYGFI S E+G DVF+H S +A G +L EGQ V +D V + A G Sbjct: 2 RGTVKWFNNQKGYGFI----SDETGKDVFVHYSGLAGEGFKSLEEGQAVEFDVV-DGAKG 56 Query: 64 KYSAENLKL 72 + +KL Sbjct: 57 PQATNVVKL 65 >gi|28871287|ref|NP_793906.1| cold shock protein CapB [Pseudomonas syringae pv. tomato str. DC3000] gi|66047111|ref|YP_236952.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|70728640|ref|YP_258389.1| cold acclimation protein B-like protein [Pseudomonas fluorescens Pf-5] gi|71736780|ref|YP_273637.1| cold shock protein CapB [Pseudomonas syringae pv. phaseolicola 1448A] gi|77457428|ref|YP_346933.1| cold-shock DNA-binding protein family protein [Pseudomonas fluorescens Pf0-1] gi|213970877|ref|ZP_03399000.1| cold acclimation protein B-related protein [Pseudomonas syringae pv. tomato T1] gi|229588835|ref|YP_002870954.1| cold shock protein [Pseudomonas fluorescens SBW25] gi|237798785|ref|ZP_04587246.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|257486637|ref|ZP_05640678.1| cold shock protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626589|ref|ZP_06459543.1| cold shock protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647565|ref|ZP_06478908.1| cold shock protein [Pseudomonas syringae pv. aesculi str. 2250] gi|289676765|ref|ZP_06497655.1| cold shock protein [Pseudomonas syringae pv. syringae FF5] gi|298488746|ref|ZP_07006775.1| Cold shock protein capB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301383772|ref|ZP_07232190.1| cold shock protein [Pseudomonas syringae pv. tomato Max13] gi|302059920|ref|ZP_07251461.1| cold shock protein [Pseudomonas syringae pv. tomato K40] gi|302184709|ref|ZP_07261382.1| cold shock protein [Pseudomonas syringae pv. syringae 642] gi|312959425|ref|ZP_07773942.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] gi|330807866|ref|YP_004352328.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|60391849|sp|P0A105|CAPB_PSESM RecName: Full=Cold shock protein CapB; AltName: Full=Cold acclimation protein B gi|60391850|sp|P0A106|CAPB_PSEFR RecName: Full=Cold shock protein CapB; AltName: Full=C8.0; AltName: Full=Cold acclimation protein B gi|1513081|gb|AAC45997.1| cold acclimation protein B [Pseudomonas fragi] gi|28854537|gb|AAO57601.1| cold shock protein CapB [Pseudomonas syringae pv. tomato str. DC3000] gi|63257818|gb|AAY38914.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|68342939|gb|AAY90545.1| cold acclimation protein B-related protein [Pseudomonas fluorescens Pf-5] gi|71557333|gb|AAZ36544.1| cold shock protein CapB [Pseudomonas syringae pv. phaseolicola 1448A] gi|77381431|gb|ABA72944.1| cold shock protein [Pseudomonas fluorescens Pf0-1] gi|213924400|gb|EEB57972.1| cold acclimation protein B-related protein [Pseudomonas syringae pv. tomato T1] gi|229360701|emb|CAY47559.1| cold shock protein [Pseudomonas fluorescens SBW25] gi|298156819|gb|EFH97910.1| Cold shock protein capB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|311286142|gb|EFQ64706.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] gi|320325639|gb|EFW81701.1| cold shock protein [Pseudomonas syringae pv. glycinea str. B076] gi|320327078|gb|EFW83092.1| cold shock protein [Pseudomonas syringae pv. glycinea str. race 4] gi|327375974|gb|AEA67324.1| putative Transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|330889578|gb|EGH22239.1| cold shock protein [Pseudomonas syringae pv. mori str. 301020] gi|330898586|gb|EGH30005.1| cold shock protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330949989|gb|EGH50249.1| cold shock protein [Pseudomonas syringae Cit 7] gi|330973105|gb|EGH73171.1| cold shock protein [Pseudomonas syringae pv. aceris str. M302273PT] gi|331015681|gb|EGH95737.1| cold shock protein [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331021638|gb|EGI01695.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 69 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V++ Sbjct: 7 GTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSF 52 >gi|251794220|ref|YP_003008951.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] gi|247541846|gb|ACS98864.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] Length = 66 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ V ++ VQ Sbjct: 1 MQQGTVKWFNAEKGFGFIEVEG----GNDVFVHFSAIVGEGFKTLEEGQRVEFNVVQ--G 54 Query: 62 NGKYSAENL 70 N AEN+ Sbjct: 55 NRGPQAENV 63 >gi|270159041|ref|ZP_06187697.1| cold shock protein [Legionella longbeachae D-4968] gi|289166123|ref|YP_003456261.1| Cold shock-like protein CspD [Legionella longbeachae NSW150] gi|269987380|gb|EEZ93635.1| cold shock protein [Legionella longbeachae D-4968] gi|288859296|emb|CBJ13230.1| putative Cold shock-like protein CspD [Legionella longbeachae NSW150] Length = 76 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+N KG+GFI PE GDD+F+H S++ G L GQ+V YD Q D Sbjct: 3 RGEVKWFNNAKGWGFIIPE---NEGDDIFVHFSSIHGTGYKTLAPGQIVNYDVEQGD 56 >gi|254381082|ref|ZP_04996447.1| cold shock protein [Streptomyces sp. Mg1] gi|194339992|gb|EDX20958.1| cold shock protein [Streptomyces sp. Mg1] Length = 67 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +G GDDVF H S +A+ G L EGQ VT+D Q Sbjct: 4 GTVKWFNAAKGFGFIEQDGG---GDDVFAHFSNIAAQGFRELLEGQKVTFDIAQGQKG-- 58 Query: 65 YSAENLKL 72 +AEN+ L Sbjct: 59 PTAENIVL 66 >gi|23098474|ref|NP_691940.1| cold shock protein [Oceanobacillus iheyensis HTE831] gi|22776700|dbj|BAC12975.1| cold shock protein [Oceanobacillus iheyensis HTE831] Length = 66 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ GS+KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ V++D Sbjct: 1 MNTGSVKWFNAEKGFGFIEVEG----GDDVFVHFSAIQGEGFKTLEEGQSVSFD 50 >gi|46200113|ref|YP_005780.1| cold shock protein [Thermus thermophilus HB27] gi|46197741|gb|AAS82153.1| cold shock protein [Thermus thermophilus HB27] Length = 85 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 5/63 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI EG T DVF+H +A+ + G L EG +VT+D V+ Sbjct: 13 MQKGRVKWFNAEKGYGFIEREGDT----DVFVHYTAINAKGFRTLNEGDIVTFD-VEPGR 67 Query: 62 NGK 64 NGK Sbjct: 68 NGK 70 >gi|28377809|ref|NP_784701.1| cold shock protein CspC [Lactobacillus plantarum WCFS1] gi|254555993|ref|YP_003062410.1| cold shock protein CspC [Lactobacillus plantarum JDM1] gi|300767794|ref|ZP_07077704.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179985|ref|YP_003924113.1| cold shock protein CspC [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270642|emb|CAD63548.1| cold shock protein CspC [Lactobacillus plantarum WCFS1] gi|254044920|gb|ACT61713.1| cold shock protein CspC [Lactobacillus plantarum JDM1] gi|300494779|gb|EFK29937.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045476|gb|ADN98019.1| cold shock protein CspC [Lactobacillus plantarum subsp. plantarum ST-III] Length = 66 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N DKG+GFIT E+G DVF+H SA+ G +L EGQ V +D ++D Sbjct: 1 MEHGTVKWFNADKGFGFIT----RENGSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESD 55 >gi|157826078|ref|YP_001493798.1| cold shock-like protein [Rickettsia akari str. Hartford] gi|157800036|gb|ABV75290.1| cold shock-like protein [Rickettsia akari str. Hartford] Length = 70 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI E G DVF+H+SAV + GL +L EGQ V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQENG---GKDVFVHKSAVEATGLHSLEEGQDVIFDL--EEKQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAVNLRI 69 >gi|302557416|ref|ZP_07309758.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302475034|gb|EFL38127.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 67 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H SA+ + G L EGQ VT+D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSAINATGFRELQEGQAVTFDVTQGQKGPQ 60 Query: 65 YSAENLKLV 73 AEN+ L Sbjct: 61 --AENINLA 67 >gi|225850576|ref|YP_002730810.1| hypothetical protein PERMA_1024 [Persephonella marina EX-H1] gi|225644787|gb|ACO02973.1| conserved domain protein [Persephonella marina EX-H1] Length = 68 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KGYGFIT + + DVF+H SA+A G L EGQ V +D VQ D Sbjct: 1 MRLTGTVKWFNSKKGYGFITRD---DGQGDVFVHFSAIAENGFKTLEEGQKVEFDVVQED 57 Query: 61 ANGKYSAENL 70 K A+N+ Sbjct: 58 KGQK--AQNV 65 >gi|134099205|ref|YP_001104866.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291009987|ref|ZP_06567960.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|133911828|emb|CAM01941.1| cold-shock DNA-binding domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 67 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P+ G DVF+H SA+ S G +L E Q VTYD Q Sbjct: 3 QGTVKWFNSEKGFGFIAPDAG---GPDVFVHYSAIDSTGFRSLEENQQVTYDVTQ 54 >gi|55980144|ref|YP_143441.1| cold shock protein [Thermus thermophilus HB8] gi|291463422|pdb|3A0J|A Chain A, Crystal Structure Of Cold Shock Protein 1 From Thermus Thermophilus Hb8 gi|291463423|pdb|3A0J|B Chain B, Crystal Structure Of Cold Shock Protein 1 From Thermus Thermophilus Hb8 gi|27374959|dbj|BAC53777.1| cold shock protein homolog [Thermus thermophilus] gi|55771557|dbj|BAD69998.1| cold shock protein [Thermus thermophilus HB8] Length = 73 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 5/63 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI EG T DVF+H +A+ + G L EG +VT+D V+ Sbjct: 1 MQKGRVKWFNAEKGYGFIEREGDT----DVFVHYTAINAKGFRTLNEGDIVTFD-VEPGR 55 Query: 62 NGK 64 NGK Sbjct: 56 NGK 58 >gi|152995290|ref|YP_001340125.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150836214|gb|ABR70190.1| putative cold-shock DNA-binding domain protein [Marinomonas sp. MWYL1] Length = 156 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GF+T E+GDDVF+H A+ G L EGQLV + YV G Sbjct: 91 QGTVKWFNSSKGFGFLT----MENGDDVFVHYRAIRGRGRRFLVEGQLVRF-YVTEGEKG 145 Query: 64 KYSAENLKLV 73 K AEN+ ++ Sbjct: 146 K-QAENVSII 154 >gi|302538788|ref|ZP_07291130.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302447683|gb|EFL19499.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 67 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H SA+ S G L EGQ VT+D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSAINSTGYRELQEGQAVTFDVTQGQKGPQ 60 Query: 65 YSAENLKLV 73 AEN+ L Sbjct: 61 --AENINLA 67 >gi|257869655|ref|ZP_05649308.1| cold-shock protein [Enterococcus gallinarum EG2] gi|257803819|gb|EEV32641.1| cold-shock protein [Enterococcus gallinarum EG2] Length = 66 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFIT +G GDDVF+H SA+ G +L EGQ V + V+ A Sbjct: 1 MEHGKVKWFNNEKGFGFITVDG----GDDVFVHFSAIQGDGFKSLEEGQEVEFSIVEG-A 55 Query: 62 NGKYSAENLKL 72 G +AE K+ Sbjct: 56 RGPQAAEVTKI 66 >gi|85715709|ref|ZP_01046688.1| cold shock protein [Nitrobacter sp. Nb-311A] gi|85697362|gb|EAQ35241.1| cold shock protein [Nitrobacter sp. Nb-311A] Length = 62 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 5/66 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N K YGFI P+ G VF+H SAV AGL +L EG V+Y+ V N GK S Sbjct: 1 MKWFNGQKSYGFIAPD---NGGKVVFVHISAVEKAGLGSLNEGDKVSYEVVVN--RGKES 55 Query: 67 AENLKL 72 AENL++ Sbjct: 56 AENLRV 61 >gi|50915110|ref|YP_061082.1| cold shock protein [Streptococcus pyogenes MGAS10394] gi|50904184|gb|AAT87899.1| Cold shock protein [Streptococcus pyogenes MGAS10394] Length = 69 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI STE+G DVF H SA+ ++G L EGQ V +D Sbjct: 5 QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTSGFKTLEEGQKVAFD 52 >gi|332971719|gb|EGK10667.1| cold shock protein CspA [Desmospora sp. 8437] Length = 65 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N +KGYGFI EG GDDVF+H SA+ G L EGQ V ++ V+ Sbjct: 2 QGKVKWFNAEKGYGFIEREG----GDDVFVHYSAIQEEGFKTLDEGQTVEFEIVE 52 >gi|317127033|ref|YP_004093315.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] gi|315471981|gb|ADU28584.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] Length = 65 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ V ++ V D G Sbjct: 3 GKVKWFNSEKGFGFIEREG----GDDVFVHFSAIQGEGFKTLEEGQEVEFEIVDGD-RGP 57 Query: 65 YSAENLKL 72 +A +KL Sbjct: 58 QAANVVKL 65 >gi|158425669|ref|YP_001526961.1| cold shock protein [Azorhizobium caulinodans ORS 571] gi|158332558|dbj|BAF90043.1| cold shock protein [Azorhizobium caulinodans ORS 571] Length = 237 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KWYNP+KG+GFI EG G DVF+H + V+ +GL +L+EGQ V Q Sbjct: 173 GTVKWYNPEKGFGFIAVEG---GGKDVFVHVTVVSRSGLADLSEGQRVVVQVGQ 223 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+NP+KG+GF+ E S SG DVFLH A+ +AG ++ G ++ Q G+ Sbjct: 69 TVKWFNPEKGFGFV--ELSDGSG-DVFLHARALEAAGQESVPPGSKLSVRVGQGQ-KGRQ 124 Query: 66 SAENLKL 72 E L++ Sbjct: 125 VTEVLEV 131 >gi|290510381|ref|ZP_06549751.1| cold shock protein (beta-ribbon, CspA family) [Klebsiella sp. 1_1_55] gi|289777097|gb|EFD85095.1| cold shock protein (beta-ribbon, CspA family) [Klebsiella sp. 1_1_55] Length = 97 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + N A G Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 88 Query: 64 KYSAENLKL 72 +A + + Sbjct: 89 PSAANVMAI 97 >gi|206579703|ref|YP_002239721.1| cold shock protein CspE [Klebsiella pneumoniae 342] gi|288936563|ref|YP_003440622.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|206568761|gb|ACI10537.1| cold shock protein CspE [Klebsiella pneumoniae 342] gi|288891272|gb|ADC59590.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] Length = 69 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + N A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVMAI 69 >gi|54293420|ref|YP_125835.1| hypothetical protein lpl0469 [Legionella pneumophila str. Lens] gi|53753252|emb|CAH14699.1| hypothetical protein lpl0469 [Legionella pneumophila str. Lens] Length = 77 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+N KG+GFI PEG G+D+F+H S++ G L GQ VTYD + + Sbjct: 3 RGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLVPGQAVTYDVINGE 56 >gi|330983211|gb|EGH81314.1| cold shock protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 67 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V++ Sbjct: 5 GTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSF 50 >gi|85374781|ref|YP_458843.1| cold shock protein [Erythrobacter litoralis HTCC2594] gi|84787864|gb|ABC64046.1| Cold shock protein [Erythrobacter litoralis HTCC2594] Length = 70 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G++K++N DKGYGFI P +GS +S F+H SAV +AG+ L + Q + YD V+ Sbjct: 1 MAKTGTVKFFNEDKGYGFIQPDDGSADS----FVHISAVQAAGMQTLDKEQRLNYD-VEQ 55 Query: 60 DANGKYSAENL 70 NGK SA NL Sbjct: 56 GRNGKESAVNL 66 >gi|229020404|ref|ZP_04177159.1| hypothetical protein bcere0030_48910 [Bacillus cereus AH1273] gi|229026633|ref|ZP_04182975.1| hypothetical protein bcere0029_49020 [Bacillus cereus AH1272] gi|228734666|gb|EEL85318.1| hypothetical protein bcere0029_49020 [Bacillus cereus AH1272] gi|228740883|gb|EEL91126.1| hypothetical protein bcere0030_48910 [Bacillus cereus AH1273] Length = 89 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + Sbjct: 23 MNMQGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 77 Query: 61 ANGKYSAENLKL 72 A G +A +KL Sbjct: 78 ARGPQAANVVKL 89 >gi|9968446|emb|CAC06102.1| cold shock protein [Lactobacillus plantarum] Length = 66 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N DKG+GFIT E+G DVF+H SA+ G +L EGQ V +D ++D Sbjct: 1 MEHGTVKWFNADKGFGFIT----RENGSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESD 55 >gi|239995438|ref|ZP_04715962.1| putative Cold shock-like protein [Alteromonas macleodii ATCC 27126] Length = 70 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITPE G DVF+H ++AS G L EGQ V+++ Q Sbjct: 7 GTVKWFNEEKGFGFITPEA---GGKDVFVHFRSIASDGFKTLKEGQEVSFEVEQ 57 >gi|291303552|ref|YP_003514830.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290572772|gb|ADD45737.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis DSM 44728] Length = 66 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N +KGYGF+ +G G+DVF+H SA+ + G +L +GQ V +D Q Sbjct: 3 QGSVKWFNAEKGYGFLAVDG----GEDVFVHFSAIQADGYRSLEDGQRVEFDIAQGQKGP 58 Query: 64 KYSAENLKLV 73 + AEN+++V Sbjct: 59 Q--AENVRIV 66 >gi|104783408|ref|YP_609906.1| cold shock protein [Pseudomonas entomophila L48] gi|95112395|emb|CAK17122.1| cold shock protein [Pseudomonas entomophila L48] Length = 69 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDEKGYGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56 >gi|262376813|ref|ZP_06070040.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] gi|262308158|gb|EEY89294.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] Length = 71 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 V +G++KW+N KG+GFI ESG DVF H S +AS+G L EGQLV + Q Sbjct: 6 VVKGTVKWFNETKGFGFI----QQESGPDVFAHFSEIASSGFKTLMEGQLVEFSVAQ 58 >gi|205374414|ref|ZP_03227211.1| cold shock protein [Bacillus coahuilensis m4-4] Length = 66 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G +KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ VT+D Sbjct: 1 MNTGKVKWFNAEKGFGFIEVEG----GDDVFVHFSAIQGEGFKTLEEGQSVTFD 50 >gi|304391309|ref|ZP_07373253.1| probable cold shock protein y4ch [Ahrensia sp. R2A130] gi|303296665|gb|EFL91021.1| probable cold shock protein y4ch [Ahrensia sp. R2A130] Length = 68 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 4/61 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K++N KGYGFITP+ + G D+F+H SAV +GL L+EG +T+D V+ D G Sbjct: 2 QGHVKFFNAAKGYGFITPD---DGGADIFVHISAVEQSGLTTLSEGSAITFD-VEPDKKG 57 Query: 64 K 64 K Sbjct: 58 K 58 >gi|157691252|ref|YP_001485714.1| cold-shock protein [Bacillus pumilus SAFR-032] gi|157680010|gb|ABV61154.1| cold-shock protein [Bacillus pumilus SAFR-032] Length = 67 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V++D V+ + Sbjct: 1 MEQGTVKWFNAEKGFGFI----EREEGDDVFVHFSAIQGDGFKSLDEGQKVSFD-VEQGS 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 RGAQAANVQKI 66 >gi|126735271|ref|ZP_01751017.1| cold shock family protein [Roseobacter sp. CCS2] gi|126715826|gb|EBA12691.1| cold shock family protein [Roseobacter sp. CCS2] Length = 69 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G D+F+H SAV +GL L + Q VT+D ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPD---DGGADIFVHISAVEQSGLTGLADDQKVTFDLIEG-RDGR 59 Query: 65 YSAENLKLV 73 A N+ V Sbjct: 60 QMAGNIAKV 68 >gi|91209672|ref|YP_539658.1| cold shock protein CspE [Escherichia coli UTI89] gi|237707404|ref|ZP_04537885.1| cold shock protein E [Escherichia sp. 3_2_53FAA] gi|332281760|ref|ZP_08394173.1| cold shock protein E [Shigella sp. D9] gi|26107003|gb|AAN79187.1|AE016757_91 Cold shock-like protein cspE [Escherichia coli CFT073] gi|91071246|gb|ABE06127.1| cold shock-like protein CspE [Escherichia coli UTI89] gi|226898614|gb|EEH84873.1| cold shock protein E [Escherichia sp. 3_2_53FAA] gi|332104112|gb|EGJ07458.1| cold shock protein E [Shigella sp. D9] Length = 97 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ + N A G Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 88 Query: 64 KYSAENLKL 72 +A + L Sbjct: 89 PSAANVIAL 97 >gi|302552862|ref|ZP_07305204.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] gi|302470480|gb|EFL33573.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] Length = 67 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G DVF H S +A++G L EGQ VT+D Q + Sbjct: 4 GTVKWFNSEKGFGFIEQEGG---GPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|119477239|ref|ZP_01617475.1| cold-shock DNA-binding domain family protein [marine gamma proteobacterium HTCC2143] gi|119449602|gb|EAW30840.1| cold-shock DNA-binding domain family protein [marine gamma proteobacterium HTCC2143] Length = 68 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58 +G++KW+NPDKG+GFITPE + G D+F+H S + S G F L +GQ V ++ Q Sbjct: 3 KGTVKWFNPDKGFGFITPE---DGGKDLFVHHSEIQSGGGFATLNDGQDVEFEVGQ 55 >gi|114704723|ref|ZP_01437631.1| cold shock protein [Fulvimarina pelagi HTCC2506] gi|114539508|gb|EAU42628.1| cold shock protein [Fulvimarina pelagi HTCC2506] Length = 70 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+IK++N KG+GF+TPEG ++ DVFLH SA+ +G+ ++ EG +T+D + D Sbjct: 1 MSQTGTIKFFNESKGFGFVTPEGGSK---DVFLHISALERSGISSVQEGDKITFD-TEPD 56 Query: 61 ANGK-YSAENLKL 72 GK A N++L Sbjct: 57 PRGKGPKAVNIQL 69 >gi|84516461|ref|ZP_01003820.1| cold shock family protein [Loktanella vestfoldensis SKA53] gi|84509497|gb|EAQ05955.1| cold shock family protein [Loktanella vestfoldensis SKA53] Length = 69 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G+D+F+H SAV +G+ L + Q +T+D V+ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPD---DGGNDIFVHISAVEQSGMTGLADNQKITFDLVEG-RDGR 59 Query: 65 YSAENL 70 A NL Sbjct: 60 KMAGNL 65 >gi|290958776|ref|YP_003489958.1| cold shock protein [Streptomyces scabiei 87.22] gi|260648302|emb|CBG71413.1| cold shock protein [Streptomyces scabiei 87.22] Length = 67 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G DVF H S +A++G L EGQ VT+D Q + Sbjct: 4 GTVKWFNSEKGFGFIEQEGG---GPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|190575401|ref|YP_001973246.1| putative cold shock protein [Stenotrophomonas maltophilia K279a] gi|194366737|ref|YP_002029347.1| cold-shock DNA-binding domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|254524874|ref|ZP_05136929.1| putative 'Cold-shock' DNA-binding domain protein [Stenotrophomonas sp. SKA14] gi|190013323|emb|CAQ46957.1| putative cold shock protein [Stenotrophomonas maltophilia K279a] gi|194349541|gb|ACF52664.1| cold-shock DNA-binding domain protein [Stenotrophomonas maltophilia R551-3] gi|219722465|gb|EED40990.1| putative 'Cold-shock' DNA-binding domain protein [Stenotrophomonas sp. SKA14] Length = 68 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+PE + DVF H SA+ S G +L EGQ VTYD Q Sbjct: 4 GTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVTYDVTQ 54 >gi|110804727|ref|YP_688247.1| cold shock protein CspE [Shigella flexneri 5 str. 8401] gi|110614275|gb|ABF02942.1| cold shock protein [Shigella flexneri 5 str. 8401] gi|281600039|gb|ADA73023.1| Cold shock protein [Shigella flexneri 2002017] Length = 97 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ + N A G Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 88 Query: 64 KYSAENLKL 72 +A + L Sbjct: 89 PSAANVIAL 97 >gi|328951487|ref|YP_004368822.1| cold-shock DNA-binding domain protein [Marinithermus hydrothermalis DSM 14884] gi|328451811|gb|AEB12712.1| cold-shock DNA-binding domain protein [Marinithermus hydrothermalis DSM 14884] Length = 72 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI ESG DVF+H SA+ G L EG +VT++ ++ A Sbjct: 1 MEKGRVKWFNAEKGYGFI----ERESGGDVFVHFSAINGTGFRTLNEGDVVTFE-IKQAA 55 Query: 62 NGKYSAENLKLVPKSSN 78 G +A+N+ +V +S Sbjct: 56 KGP-AADNVTVVEPASQ 71 >gi|109900083|ref|YP_663338.1| cold-shock DNA-binding domain-containing protein [Pseudoalteromonas atlantica T6c] gi|109702364|gb|ABG42284.1| cold-shock DNA-binding protein family [Pseudoalteromonas atlantica T6c] Length = 69 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N DKG+GFI ESG DVF H SA+ S G L EGQ V + Q + Sbjct: 7 GSVKWFNEDKGFGFI----EQESGPDVFAHFSAIVSEGFKTLAEGQRVEFTVTQGQKGPQ 62 Query: 65 YSAENLKLV 73 AEN+ + Sbjct: 63 --AENIVCI 69 >gi|302037950|ref|YP_003798272.1| cold shock protein CspA [Candidatus Nitrospira defluvii] gi|300606014|emb|CBK42347.1| Cold shock protein CspA [Candidatus Nitrospira defluvii] Length = 72 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 5/77 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N KG+GFI +G GDDVF+H SA+ G L EG+ V +D VQ Sbjct: 1 MKTKGTVKWFNDRKGFGFIRLDG----GDDVFVHYSALQGEGFKTLKEGENVEFDIVQG- 55 Query: 61 ANGKYSAENLKLVPKSS 77 A G +A LK + +S Sbjct: 56 AKGPQAANVLKDLATAS 72 >gi|209809400|ref|YP_002264938.1| cold shock-like protein [Aliivibrio salmonicida LFI1238] gi|208010962|emb|CAQ81368.1| cold shock-like protein [Aliivibrio salmonicida LFI1238] Length = 69 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N DKG+GFIT E G DVF H SA+ S G L EGQ VT++ Q Sbjct: 6 GTVKWFNEDKGFGFITQE---NGGPDVFAHFSAIQSEGFKTLKEGQAVTFEVEQ 56 >gi|94971545|ref|YP_593593.1| cold-shock DNA-binding protein family protein [Candidatus Koribacter versatilis Ellin345] gi|94553595|gb|ABF43519.1| cold-shock DNA-binding protein family [Candidatus Koribacter versatilis Ellin345] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KGYGFI S ++G+DVF+H SA+ S G +L EGQ VT+ V+ Sbjct: 1 MEQGTVKWFNDAKGYGFI----SRQNGEDVFVHFSAIESKGFRSLQEGQAVTFSVVK 53 >gi|331641125|ref|ZP_08342260.1| cold shock protein [Escherichia coli H736] gi|331645781|ref|ZP_08346884.1| cold shock protein [Escherichia coli M605] gi|331651632|ref|ZP_08352651.1| cold shock protein [Escherichia coli M718] gi|331672164|ref|ZP_08372956.1| cold shock protein [Escherichia coli TA280] gi|331676282|ref|ZP_08376994.1| cold shock protein [Escherichia coli H591] gi|1778540|gb|AAB40823.1| cold shock-like protein [Escherichia coli] gi|331037923|gb|EGI10143.1| cold shock protein [Escherichia coli H736] gi|331044533|gb|EGI16660.1| cold shock protein [Escherichia coli M605] gi|331049910|gb|EGI21968.1| cold shock protein [Escherichia coli M718] gi|331070631|gb|EGI41994.1| cold shock protein [Escherichia coli TA280] gi|331076340|gb|EGI47622.1| cold shock protein [Escherichia coli H591] gi|332097718|gb|EGJ02692.1| cold shock-like protein cspI [Shigella boydii 3594-74] Length = 79 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ + N A G Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 70 Query: 64 KYSAENLKL 72 +A + L Sbjct: 71 PSAANVIAL 79 >gi|315644644|ref|ZP_07897776.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|329928423|ref|ZP_08282293.1| major cold shock protein CspA [Paenibacillus sp. HGF5] gi|315280151|gb|EFU43448.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|328937859|gb|EGG34265.1| major cold shock protein CspA [Paenibacillus sp. HGF5] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G+DVF+H SA+ G +L EGQ V ++ VQ Sbjct: 1 MQTGTVKWFNAEKGFGFIEVEG----GEDVFVHFSAITGDGFKSLDEGQRVEFNVVQ--G 54 Query: 62 NGKYSAENL 70 N AEN+ Sbjct: 55 NRGQQAENV 63 >gi|257078464|ref|ZP_05572825.1| cold-shock protein [Enterococcus faecalis JH1] gi|257091195|ref|ZP_05585556.1| cold-shock protein [Enterococcus faecalis CH188] gi|294779596|ref|ZP_06744987.1| major cold shock protein CspA [Enterococcus faecalis PC1.1] gi|307269865|ref|ZP_07551192.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|312902662|ref|ZP_07761867.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|256986494|gb|EEU73796.1| cold-shock protein [Enterococcus faecalis JH1] gi|257000007|gb|EEU86527.1| cold-shock protein [Enterococcus faecalis CH188] gi|294453253|gb|EFG21664.1| major cold shock protein CspA [Enterococcus faecalis PC1.1] gi|306513772|gb|EFM82377.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|310634000|gb|EFQ17283.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|315162264|gb|EFU06281.1| major cold shock protein CspA [Enterococcus faecalis TX0645] gi|315579305|gb|EFU91496.1| major cold shock protein CspA [Enterococcus faecalis TX0630] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N DKG+GFIT E G+DVF H SA+ + G L EGQ VT+D Sbjct: 1 MNNGTVKWFNADKGFGFITG----EDGNDVFAHFSAIQTDGFKTLDEGQTVTFD 50 >gi|148253260|ref|YP_001237845.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp. BTAi1] gi|146405433|gb|ABQ33939.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1] Length = 71 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +L+EGQ ++++ V+ D Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLSEGQRISFE-VEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KKGK 60 >gi|147679090|ref|YP_001213305.1| cold shock proteins [Pelotomaculum thermopropionicum SI] gi|146275187|dbj|BAF60936.1| cold shock proteins [Pelotomaculum thermopropionicum SI] Length = 65 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V +D V+ A G Sbjct: 3 GKVKWFNQEKGYGFI----EREDGGDVFVHFSAIQEEGFKTLAEGQKVEFDIVEG-ARGP 57 Query: 65 YSAENLKL 72 +A +KL Sbjct: 58 QAANVIKL 65 >gi|70729479|ref|YP_259217.1| cold shock protein capa, fragment-like protein [Pseudomonas fluorescens Pf-5] gi|312961945|ref|ZP_07776442.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] gi|68343778|gb|AAY91384.1| cold shock protein capa [Pseudomonas fluorescens Pf-5] gi|311283755|gb|EFQ62339.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] Length = 91 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ Sbjct: 28 GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF 74 >gi|258590957|emb|CBE67252.1| Cold shock protein, DNA binding [NC10 bacterium 'Dutch sediment'] Length = 68 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KGYGFI + E GDDVF+H SA++ +G +L EGQ V +D V Sbjct: 5 GTVKWFNDAKGYGFI----AREDGDDVFVHYSAISGSGFRSLNEGQAVEFDVV 53 >gi|257865157|ref|ZP_05644810.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC30] gi|257871481|ref|ZP_05651134.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC10] gi|257874772|ref|ZP_05654425.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC20] gi|325571583|ref|ZP_08147083.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] gi|257799091|gb|EEV28143.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC30] gi|257805645|gb|EEV34467.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC10] gi|257808938|gb|EEV37758.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC20] gi|325156059|gb|EGC68255.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KG+GFI S E G DVF+H SA+ G L EGQ VT+D +D Sbjct: 1 MEQGTVKWFNAEKGFGFI----SREDGTDVFVHFSAIQGEGFKTLEEGQAVTFDVEDSD 55 >gi|254456290|ref|ZP_05069719.1| 'Cold-shock' DNA-binding domain, putative [Candidatus Pelagibacter sp. HTCC7211] gi|207083292|gb|EDZ60718.1| 'Cold-shock' DNA-binding domain, putative [Candidatus Pelagibacter sp. HTCC7211] Length = 68 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+NP KG+GFI E + DVF+H SAV AG+ L EGQ +T+D V++ Sbjct: 1 MSLQGKVKWFNPTKGFGFIEREDKEK---DVFVHVSAVRDAGMNGLDEGQALTFD-VEDG 56 Query: 61 ANGKYSAENLK 71 G SA NLK Sbjct: 57 PKGP-SAVNLK 66 >gi|167757688|ref|ZP_02429815.1| hypothetical protein CLOSCI_00018 [Clostridium scindens ATCC 35704] gi|167664708|gb|EDS08838.1| hypothetical protein CLOSCI_00018 [Clostridium scindens ATCC 35704] Length = 104 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +++ G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT+D Sbjct: 35 LMNNGTVKWFNSEKGYGFITG----EDGKDVFVHFSAIMCDGFKTLEEGQAVTFD 85 >gi|284007335|emb|CBA72699.1| cold shock protein CspE [Arsenophonus nasoniae] Length = 88 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITPEG G DVF+H +A+ G LT GQ V +D +Q + G Sbjct: 25 GTVKWFNETKGFGFITPEG---GGKDVFVHYTAIDVNGFKTLTVGQKVEFD-IQEGSKGS 80 Query: 65 YSAENLKLV 73 +A N+ ++ Sbjct: 81 -AANNVTII 88 >gi|237730609|ref|ZP_04561090.1| cold shock protein CspE [Citrobacter sp. 30_2] gi|226906148|gb|EEH92066.1| cold shock protein CspE [Citrobacter sp. 30_2] Length = 100 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ + N A G Sbjct: 36 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 91 Query: 64 KYSAENLKL 72 +A + L Sbjct: 92 PSAANVIAL 100 >gi|189426235|ref|YP_001953412.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ] gi|189422494|gb|ACD96892.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ] Length = 67 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N KG+GFI EG G+DVF H SA+ S G +L EG+ V++D VQ Sbjct: 3 QGKVKWFNDTKGFGFIEQEG----GEDVFAHFSAIQSEGFKSLAEGESVSFDIVQ 53 >gi|149911304|ref|ZP_01899925.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] gi|149805619|gb|EDM65621.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] Length = 67 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 38/52 (73%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 RG++KW+N DKG+GFITP+ E G+D+F+H S + ++G L +GQ V ++ Sbjct: 3 RGTVKWFNADKGFGFITPD---EGGNDLFVHHSEIQTSGYATLEDGQKVEFE 51 >gi|32490926|ref|NP_871180.1| cold shock protein CspE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166132|dbj|BAC24323.1| cspE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 69 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + N A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITNGAKG 60 Query: 64 KYSA 67 +A Sbjct: 61 PSAA 64 >gi|257865337|ref|ZP_05644990.1| cold-shock protein [Enterococcus casseliflavus EC30] gi|257871667|ref|ZP_05651320.1| cold-shock protein [Enterococcus casseliflavus EC10] gi|325571430|ref|ZP_08146930.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] gi|257799271|gb|EEV28323.1| cold-shock protein [Enterococcus casseliflavus EC30] gi|257805831|gb|EEV34653.1| cold-shock protein [Enterococcus casseliflavus EC10] gi|325155906|gb|EGC68102.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ VT+D Sbjct: 1 MNNGTVKWFNADKGFGFITG----EDGNDVFAHFSAIQGDGFKTLEEGQAVTFD 50 >gi|322382422|ref|ZP_08056325.1| major cold-shock protein RNA helicase co-factor RNA co-chaperone-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153639|gb|EFX46018.1| major cold-shock protein RNA helicase co-factor RNA co-chaperone-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 65 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V +D V+ A G Sbjct: 2 QGKVKWFNAEKGYGFI----EREDGGDVFVHFSAIQGEGFKTLEEGQSVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|227550363|ref|ZP_03980412.1| CspA family cold shock transcriptional regulator [Enterococcus faecium TX1330] gi|257879582|ref|ZP_05659235.1| cold-shock domain-contain protein [Enterococcus faecium 1,230,933] gi|257882601|ref|ZP_05662254.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,502] gi|257885024|ref|ZP_05664677.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,501] gi|257888396|ref|ZP_05668049.1| cold-shock domain-contain protein [Enterococcus faecium 1,141,733] gi|257890250|ref|ZP_05669903.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,410] gi|257893434|ref|ZP_05673087.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,408] gi|257897230|ref|ZP_05676883.1| cold-shock domain-contain protein [Enterococcus faecium Com12] gi|257899231|ref|ZP_05678884.1| cold-shock domain-contain protein [Enterococcus faecium Com15] gi|258616807|ref|ZP_05714577.1| cold-shock domain-contain protein [Enterococcus faecium DO] gi|260559753|ref|ZP_05831933.1| cold-shock domain-containing protein [Enterococcus faecium C68] gi|261207314|ref|ZP_05922001.1| cold-shock domain-containing protein [Enterococcus faecium TC 6] gi|289566513|ref|ZP_06446936.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF] gi|293378002|ref|ZP_06624180.1| major cold shock protein CspA [Enterococcus faecium PC4.1] gi|293557236|ref|ZP_06675784.1| cold-shock protein [Enterococcus faecium E1039] gi|293559750|ref|ZP_06676271.1| cold shock protein [Enterococcus faecium E1162] gi|293567614|ref|ZP_06678958.1| cold-shock protein [Enterococcus faecium E1071] gi|293570377|ref|ZP_06681434.1| cold-shock protein [Enterococcus faecium E980] gi|294616534|ref|ZP_06696312.1| cold-shock protein [Enterococcus faecium E1636] gi|294618375|ref|ZP_06697953.1| cold shock protein [Enterococcus faecium E1679] gi|294623246|ref|ZP_06702117.1| cold shock protein [Enterococcus faecium U0317] gi|314938910|ref|ZP_07846177.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|314943096|ref|ZP_07849897.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|314948107|ref|ZP_07851508.1| major cold shock protein CspA [Enterococcus faecium TX0082] gi|314951627|ref|ZP_07854672.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|314993868|ref|ZP_07859202.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|314996709|ref|ZP_07861732.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|227180502|gb|EEI61474.1| CspA family cold shock transcriptional regulator [Enterococcus faecium TX1330] gi|257813810|gb|EEV42568.1| cold-shock domain-contain protein [Enterococcus faecium 1,230,933] gi|257818259|gb|EEV45587.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,502] gi|257820876|gb|EEV48010.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,501] gi|257824450|gb|EEV51382.1| cold-shock domain-contain protein [Enterococcus faecium 1,141,733] gi|257826610|gb|EEV53236.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,410] gi|257829813|gb|EEV56420.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,408] gi|257833795|gb|EEV60216.1| cold-shock domain-contain protein [Enterococcus faecium Com12] gi|257837143|gb|EEV62217.1| cold-shock domain-contain protein [Enterococcus faecium Com15] gi|260074421|gb|EEW62743.1| cold-shock domain-containing protein [Enterococcus faecium C68] gi|260078374|gb|EEW66078.1| cold-shock domain-containing protein [Enterococcus faecium TC 6] gi|289161667|gb|EFD09544.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF] gi|291589715|gb|EFF21519.1| cold-shock protein [Enterococcus faecium E1071] gi|291590581|gb|EFF22312.1| cold-shock protein [Enterococcus faecium E1636] gi|291595352|gb|EFF26667.1| cold shock protein [Enterococcus faecium E1679] gi|291597353|gb|EFF28533.1| cold shock protein [Enterococcus faecium U0317] gi|291600600|gb|EFF30904.1| cold-shock protein [Enterococcus faecium E1039] gi|291606298|gb|EFF35711.1| cold shock protein [Enterococcus faecium E1162] gi|291609555|gb|EFF38820.1| cold-shock protein [Enterococcus faecium E980] gi|292643367|gb|EFF61499.1| major cold shock protein CspA [Enterococcus faecium PC4.1] gi|313589147|gb|EFR67992.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|313591678|gb|EFR70523.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|313596223|gb|EFR75068.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|313598198|gb|EFR77043.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|313641784|gb|EFS06364.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|313645443|gb|EFS10023.1| major cold shock protein CspA [Enterococcus faecium TX0082] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N +KG+GFI S E G DVF+H SA+ G L EGQ VT+D ++D Sbjct: 1 MENGTVKWFNAEKGFGFI----SREDGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESD 55 >gi|218294620|ref|ZP_03495474.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23] gi|218244528|gb|EED11052.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23] Length = 73 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 5/63 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI EG T DVF+H SA+ + G L EG +VT++ V+ Sbjct: 1 MQKGRVKWFNAEKGYGFIEREGDT----DVFVHFSAINAKGFRTLNEGDIVTFE-VEPGK 55 Query: 62 NGK 64 NGK Sbjct: 56 NGK 58 >gi|187926455|ref|YP_001892800.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|241665942|ref|YP_002984301.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] gi|309778741|ref|ZP_07673514.1| cold shock transcription regulator protein [Ralstonia sp. 5_7_47FAA] gi|187728209|gb|ACD29373.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|240867969|gb|ACS65629.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] gi|308922449|gb|EFP68073.1| cold shock transcription regulator protein [Ralstonia sp. 5_7_47FAA] Length = 67 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + G+D+F H SA+ SAG +L EGQ V+++ Q Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSAINSAGFKSLKEGQKVSFEVTQ 54 >gi|15800338|ref|NP_286350.1| cold shock protein CspE [Escherichia coli O157:H7 EDL933] gi|15829916|ref|NP_308689.1| cold shock protein CspE [Escherichia coli O157:H7 str. Sakai] gi|16128606|ref|NP_415156.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. MG1655] gi|30062187|ref|NP_836358.1| cold shock protein CspE [Shigella flexneri 2a str. 2457T] gi|56479711|ref|NP_706586.2| cold shock protein CspE [Shigella flexneri 2a str. 301] gi|74311159|ref|YP_309578.1| cold shock protein CspE [Shigella sonnei Ss046] gi|82543070|ref|YP_407017.1| cold shock protein CspE [Shigella boydii Sb227] gi|82775893|ref|YP_402240.1| cold shock protein CspE [Shigella dysenteriae Sd197] gi|89107492|ref|AP_001272.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. W3110] gi|110640853|ref|YP_668581.1| cold shock protein CspE [Escherichia coli 536] gi|157157595|ref|YP_001461790.1| cold shock protein CspE [Escherichia coli E24377A] gi|157160119|ref|YP_001457437.1| cold shock protein CspE [Escherichia coli HS] gi|161486286|ref|NP_752643.2| cold shock protein CspE [Escherichia coli CFT073] gi|161504197|ref|YP_001571309.1| cold shock protein CspE [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|168752651|ref|ZP_02777673.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4113] gi|168754726|ref|ZP_02779733.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4401] gi|168770227|ref|ZP_02795234.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4486] gi|168774688|ref|ZP_02799695.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4196] gi|168779115|ref|ZP_02804122.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4076] gi|168786472|ref|ZP_02811479.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC869] gi|168798185|ref|ZP_02823192.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC508] gi|170021018|ref|YP_001725972.1| cold shock protein CspE [Escherichia coli ATCC 8739] gi|170080204|ref|YP_001729524.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170080305|ref|YP_001729625.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170682098|ref|YP_001742740.1| cold shock protein CspE [Escherichia coli SMS-3-5] gi|170767751|ref|ZP_02902204.1| cold shock protein CspE [Escherichia albertii TW07627] gi|187731707|ref|YP_001879293.1| cold shock protein CspE [Shigella boydii CDC 3083-94] gi|188493277|ref|ZP_03000547.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|191167329|ref|ZP_03029145.1| cold shock protein CspE [Escherichia coli B7A] gi|191172339|ref|ZP_03033881.1| cold shock protein CspE [Escherichia coli F11] gi|193063391|ref|ZP_03044481.1| cold shock protein CspE [Escherichia coli E22] gi|193069066|ref|ZP_03050024.1| cold shock protein CspE [Escherichia coli E110019] gi|194427975|ref|ZP_03060520.1| cold shock protein CspE [Escherichia coli B171] gi|194432522|ref|ZP_03064808.1| cold shock protein CspE [Shigella dysenteriae 1012] gi|194437525|ref|ZP_03069622.1| cold shock protein CspE [Escherichia coli 101-1] gi|195936173|ref|ZP_03081555.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4024] gi|208816170|ref|ZP_03257349.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4045] gi|208823205|ref|ZP_03263523.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4042] gi|209399192|ref|YP_002269259.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4115] gi|209917882|ref|YP_002291966.1| cold shock protein CspE [Escherichia coli SE11] gi|215485665|ref|YP_002328096.1| cold shock protein CspE [Escherichia coli O127:H6 str. E2348/69] gi|217324540|ref|ZP_03440624.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14588] gi|218549799|ref|YP_002383590.1| cold shock protein CspE [Escherichia fergusonii ATCC 35469] gi|218553166|ref|YP_002386079.1| cold shock protein CspE [Escherichia coli IAI1] gi|218557563|ref|YP_002390476.1| cold shock protein CspE [Escherichia coli S88] gi|218688447|ref|YP_002396659.1| cold shock protein CspE [Escherichia coli ED1a] gi|218694064|ref|YP_002401731.1| cold shock protein CspE [Escherichia coli 55989] gi|218698996|ref|YP_002406625.1| cold shock protein CspE [Escherichia coli IAI39] gi|218703957|ref|YP_002411476.1| cold shock protein CspE [Escherichia coli UMN026] gi|227884397|ref|ZP_04002202.1| cold shock protein CspE [Escherichia coli 83972] gi|238899902|ref|YP_002925698.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|253774390|ref|YP_003037221.1| cold shock protein CspE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160706|ref|YP_003043814.1| cold shock protein CspE [Escherichia coli B str. REL606] gi|254791790|ref|YP_003076627.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14359] gi|256020576|ref|ZP_05434441.1| cold shock protein CspE [Shigella sp. D9] gi|256023764|ref|ZP_05437629.1| cold shock protein CspE [Escherichia sp. 4_1_40B] gi|260842850|ref|YP_003220628.1| DNA-binding transcriptional repressor CspE [Escherichia coli O103:H2 str. 12009] gi|260853876|ref|YP_003227767.1| DNA-binding transcriptional repressor CspE [Escherichia coli O26:H11 str. 11368] gi|260866772|ref|YP_003233174.1| DNA-binding transcriptional repressor CspE [Escherichia coli O111:H- str. 11128] gi|261224091|ref|ZP_05938372.1| cold shock protein CspE [Escherichia coli O157:H7 str. FRIK2000] gi|261257785|ref|ZP_05950318.1| cold shock protein CspE [Escherichia coli O157:H7 str. FRIK966] gi|291281575|ref|YP_003498393.1| hypothetical protein G2583_0787 [Escherichia coli O55:H7 str. CB9615] gi|293403886|ref|ZP_06647880.1| cold shock-like protein cspE [Escherichia coli FVEC1412] gi|293408749|ref|ZP_06652588.1| cold shock protein cspE [Escherichia coli B354] gi|293413920|ref|ZP_06656569.1| cold shock-like protein cspE [Escherichia coli B185] gi|293418735|ref|ZP_06661170.1| cold shock protein [Escherichia coli B088] gi|298379662|ref|ZP_06989267.1| cold shock protein CspG [Escherichia coli FVEC1302] gi|300817859|ref|ZP_07098073.1| cold shock protein CspE [Escherichia coli MS 107-1] gi|300823062|ref|ZP_07103196.1| cold shock protein CspE [Escherichia coli MS 119-7] gi|300901127|ref|ZP_07119236.1| cold shock protein CspE [Escherichia coli MS 198-1] gi|300907798|ref|ZP_07125415.1| cold shock protein CspE [Escherichia coli MS 84-1] gi|300920567|ref|ZP_07136990.1| cold shock protein CspE [Escherichia coli MS 115-1] gi|300927278|ref|ZP_07143006.1| cold shock protein CspE [Escherichia coli MS 182-1] gi|300931553|ref|ZP_07146869.1| cold shock protein CspE [Escherichia coli MS 187-1] gi|300939622|ref|ZP_07154275.1| cold shock protein CspE [Escherichia coli MS 21-1] gi|300951119|ref|ZP_07164985.1| cold shock protein CspE [Escherichia coli MS 116-1] gi|300959188|ref|ZP_07171269.1| cold shock protein CspE [Escherichia coli MS 175-1] gi|300990086|ref|ZP_07179098.1| cold shock protein CspE [Escherichia coli MS 45-1] gi|300996792|ref|ZP_07181533.1| cold shock protein CspE [Escherichia coli MS 200-1] gi|301025248|ref|ZP_07188814.1| cold shock protein CspE [Escherichia coli MS 69-1] gi|301028903|ref|ZP_07192073.1| cold shock protein CspE [Escherichia coli MS 196-1] gi|301049818|ref|ZP_07196758.1| cold shock protein CspE [Escherichia coli MS 185-1] gi|301302102|ref|ZP_07208235.1| cold shock protein CspE [Escherichia coli MS 124-1] gi|301329140|ref|ZP_07222141.1| cold shock protein CspE [Escherichia coli MS 78-1] gi|301643967|ref|ZP_07243991.1| cold shock protein CspE [Escherichia coli MS 146-1] gi|306812944|ref|ZP_07447137.1| cold shock protein CspE [Escherichia coli NC101] gi|307137241|ref|ZP_07496597.1| cold shock protein CspE [Escherichia coli H736] gi|307312660|ref|ZP_07592292.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|309785945|ref|ZP_07680574.1| cold shock-like protein cspI [Shigella dysenteriae 1617] gi|309795509|ref|ZP_07689926.1| cold shock protein CspE [Escherichia coli MS 145-7] gi|312965070|ref|ZP_07779307.1| cold shock-like protein cspI [Escherichia coli 2362-75] gi|312970704|ref|ZP_07784885.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|331656651|ref|ZP_08357613.1| cold shock protein [Escherichia coli TA206] gi|331661988|ref|ZP_08362911.1| cold shock protein [Escherichia coli TA143] gi|331666976|ref|ZP_08367850.1| cold shock protein [Escherichia coli TA271] gi|331682045|ref|ZP_08382669.1| cold shock protein [Escherichia coli H299] gi|71154156|sp|P0A974|CSPE_ECO57 RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|71154157|sp|P0A973|CSPE_ECOL6 RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|71154158|sp|P0A972|CSPE_ECOLI RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|71154159|sp|P0A975|CSPE_SHIFL RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|12513525|gb|AAG54958.1|AE005242_2 cold shock protein [Escherichia coli O157:H7 str. EDL933] gi|471099|dbj|BAA05856.1| CspE (MsmC) [Escherichia coli] gi|833769|gb|AAA67556.1| gicA [Escherichia coli str. K-12 substr. W3110] gi|1651256|dbj|BAA35266.1| DNA-binding transcriptional repressor [Escherichia coli str. K12 substr. W3110] gi|1786841|gb|AAC73724.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. MG1655] gi|3851642|gb|AAC72388.1| unknown [Vibrio cholerae] gi|13360120|dbj|BAB34085.1| cold shock protein [Escherichia coli O157:H7 str. Sakai] gi|26986712|gb|AAN86720.1| CspE [Escherichia coli] gi|30040432|gb|AAP16164.1| cold shock protein [Shigella flexneri 2a str. 2457T] gi|56383262|gb|AAN42293.2| cold shock protein [Shigella flexneri 2a str. 301] gi|73854636|gb|AAZ87343.1| cold shock protein [Shigella sonnei Ss046] gi|81240041|gb|ABB60751.1| cold shock protein [Shigella dysenteriae Sd197] gi|81244481|gb|ABB65189.1| cold shock protein [Shigella boydii Sb227] gi|110342445|gb|ABG68682.1| cold shock-like protein CspE [Escherichia coli 536] gi|157065799|gb|ABV05054.1| cold shock protein CspE [Escherichia coli HS] gi|157079625|gb|ABV19333.1| cold shock protein CspE [Escherichia coli E24377A] gi|160865544|gb|ABX22167.1| hypothetical protein SARI_02304 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|169755946|gb|ACA78645.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|169888039|gb|ACB01746.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|169888140|gb|ACB01847.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170123239|gb|EDS92170.1| cold shock protein CspE [Escherichia albertii TW07627] gi|170519816|gb|ACB17994.1| cold shock protein CspE [Escherichia coli SMS-3-5] gi|187428699|gb|ACD07973.1| cold shock protein CspE [Shigella boydii CDC 3083-94] gi|187769726|gb|EDU33570.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4196] gi|188013582|gb|EDU51704.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4113] gi|188488476|gb|EDU63579.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|189002843|gb|EDU71829.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4076] gi|189358116|gb|EDU76535.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4401] gi|189360875|gb|EDU79294.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4486] gi|189373655|gb|EDU92071.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC869] gi|189379324|gb|EDU97740.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC508] gi|190902578|gb|EDV62311.1| cold shock protein CspE [Escherichia coli B7A] gi|190907438|gb|EDV67035.1| cold shock protein CspE [Escherichia coli F11] gi|192930975|gb|EDV83579.1| cold shock protein CspE [Escherichia coli E22] gi|192957610|gb|EDV88055.1| cold shock protein CspE [Escherichia coli E110019] gi|194413950|gb|EDX30227.1| cold shock protein CspE [Escherichia coli B171] gi|194419083|gb|EDX35166.1| cold shock protein CspE [Shigella dysenteriae 1012] gi|194423694|gb|EDX39684.1| cold shock protein CspE [Escherichia coli 101-1] gi|208732818|gb|EDZ81506.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4045] gi|208737398|gb|EDZ85082.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4042] gi|209160592|gb|ACI38025.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4115] gi|209777218|gb|ACI86921.1| cold shock protein [Escherichia coli] gi|209777220|gb|ACI86922.1| cold shock protein [Escherichia coli] gi|209777222|gb|ACI86923.1| cold shock protein [Escherichia coli] gi|209777224|gb|ACI86924.1| cold shock protein [Escherichia coli] gi|209777226|gb|ACI86925.1| cold shock protein [Escherichia coli] gi|209911141|dbj|BAG76215.1| cold shock-like protein [Escherichia coli SE11] gi|215263737|emb|CAS08072.1| DNA-binding transcriptional repressor [Escherichia coli O127:H6 str. E2348/69] gi|217320761|gb|EEC29185.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14588] gi|218350796|emb|CAU96488.1| DNA-binding transcriptional repressor [Escherichia coli 55989] gi|218357340|emb|CAQ89977.1| DNA-binding transcriptional repressor [Escherichia fergusonii ATCC 35469] gi|218359934|emb|CAQ97477.1| DNA-binding transcriptional repressor [Escherichia coli IAI1] gi|218364332|emb|CAR02005.1| DNA-binding transcriptional repressor [Escherichia coli S88] gi|218368982|emb|CAR16736.1| DNA-binding transcriptional repressor [Escherichia coli IAI39] gi|218426011|emb|CAR06828.1| DNA-binding transcriptional repressor [Escherichia coli ED1a] gi|218431054|emb|CAR11930.1| DNA-binding transcriptional repressor [Escherichia coli UMN026] gi|222032384|emb|CAP75123.1| Cold shock-like protein cspE [Escherichia coli LF82] gi|227838483|gb|EEJ48949.1| cold shock protein CspE [Escherichia coli 83972] gi|238860974|gb|ACR62972.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|242376400|emb|CAQ31099.1| transcription antiterminator and regulator of RNA stability [Escherichia coli BL21(DE3)] gi|253325434|gb|ACT30036.1| cold-shock DNA-binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972607|gb|ACT38278.1| cold shock protein E [Escherichia coli B str. REL606] gi|253976801|gb|ACT42471.1| cold shock protein E [Escherichia coli BL21(DE3)] gi|254591190|gb|ACT70551.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. TW14359] gi|257752525|dbj|BAI24027.1| DNA-binding transcriptional repressor CspE [Escherichia coli O26:H11 str. 11368] gi|257757997|dbj|BAI29494.1| DNA-binding transcriptional repressor CspE [Escherichia coli O103:H2 str. 12009] gi|257763128|dbj|BAI34623.1| DNA-binding transcriptional repressor CspE [Escherichia coli O111:H- str. 11128] gi|260450208|gb|ACX40630.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|281177773|dbj|BAI54103.1| cold shock-like protein [Escherichia coli SE15] gi|284920424|emb|CBG33485.1| cold shock-like protein [Escherichia coli 042] gi|290761448|gb|ADD55409.1| hypothetical protein G2583_0787 [Escherichia coli O55:H7 str. CB9615] gi|291325263|gb|EFE64678.1| cold shock protein [Escherichia coli B088] gi|291428472|gb|EFF01497.1| cold shock-like protein cspE [Escherichia coli FVEC1412] gi|291433978|gb|EFF06951.1| cold shock-like protein cspE [Escherichia coli B185] gi|291471927|gb|EFF14410.1| cold shock protein cspE [Escherichia coli B354] gi|294494060|gb|ADE92816.1| cold shock protein CspE [Escherichia coli IHE3034] gi|298279360|gb|EFI20868.1| cold shock protein CspG [Escherichia coli FVEC1302] gi|299878114|gb|EFI86325.1| cold shock protein CspE [Escherichia coli MS 196-1] gi|300298413|gb|EFJ54798.1| cold shock protein CspE [Escherichia coli MS 185-1] gi|300304394|gb|EFJ58914.1| cold shock protein CspE [Escherichia coli MS 200-1] gi|300314212|gb|EFJ63996.1| cold shock protein CspE [Escherichia coli MS 175-1] gi|300355435|gb|EFJ71305.1| cold shock protein CspE [Escherichia coli MS 198-1] gi|300396117|gb|EFJ79655.1| cold shock protein CspE [Escherichia coli MS 69-1] gi|300400487|gb|EFJ84025.1| cold shock protein CspE [Escherichia coli MS 84-1] gi|300407161|gb|EFJ90699.1| cold shock protein CspE [Escherichia coli MS 45-1] gi|300412430|gb|EFJ95740.1| cold shock protein CspE [Escherichia coli MS 115-1] gi|300416766|gb|EFK00077.1| cold shock protein CspE [Escherichia coli MS 182-1] gi|300449605|gb|EFK13225.1| cold shock protein CspE [Escherichia coli MS 116-1] gi|300455497|gb|EFK18990.1| cold shock protein CspE [Escherichia coli MS 21-1] gi|300460695|gb|EFK24188.1| cold shock protein CspE [Escherichia coli MS 187-1] gi|300524411|gb|EFK45480.1| cold shock protein CspE [Escherichia coli MS 119-7] gi|300529556|gb|EFK50618.1| cold shock protein CspE [Escherichia coli MS 107-1] gi|300842654|gb|EFK70414.1| cold shock protein CspE [Escherichia coli MS 124-1] gi|300844528|gb|EFK72288.1| cold shock protein CspE [Escherichia coli MS 78-1] gi|301077663|gb|EFK92469.1| cold shock protein CspE [Escherichia coli MS 146-1] gi|305853707|gb|EFM54146.1| cold shock protein CspE [Escherichia coli NC101] gi|306907362|gb|EFN37867.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|307552494|gb|ADN45269.1| cold shock-like protein CspE [Escherichia coli ABU 83972] gi|307627938|gb|ADN72242.1| cold shock protein CspE [Escherichia coli UM146] gi|308120884|gb|EFO58146.1| cold shock protein CspE [Escherichia coli MS 145-7] gi|308926056|gb|EFP71534.1| cold shock-like protein cspI [Shigella dysenteriae 1617] gi|309700862|emb|CBJ00159.1| cold shock-like protein [Escherichia coli ETEC H10407] gi|310337353|gb|EFQ02491.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|312290161|gb|EFR18044.1| cold shock-like protein cspI [Escherichia coli 2362-75] gi|312945171|gb|ADR25998.1| cold shock protein CspE [Escherichia coli O83:H1 str. NRG 857C] gi|313649731|gb|EFS14155.1| cold shock-like protein cspI [Shigella flexneri 2a str. 2457T] gi|315059879|gb|ADT74206.1| DNA-binding transcriptional repressor [Escherichia coli W] gi|315135289|dbj|BAJ42448.1| cold shock protein CspE [Escherichia coli DH1] gi|315255074|gb|EFU35042.1| cold shock protein CspE [Escherichia coli MS 85-1] gi|315287050|gb|EFU46465.1| cold shock protein CspE [Escherichia coli MS 110-3] gi|315292127|gb|EFU51479.1| cold shock protein CspE [Escherichia coli MS 153-1] gi|315299117|gb|EFU58371.1| cold shock protein CspE [Escherichia coli MS 16-3] gi|315616459|gb|EFU97076.1| cold shock-like protein cspI [Escherichia coli 3431] gi|320175134|gb|EFW50246.1| Cold shock protein CspE [Shigella dysenteriae CDC 74-1112] gi|320178413|gb|EFW53381.1| Cold shock protein CspE [Shigella boydii ATCC 9905] gi|320185402|gb|EFW60172.1| Cold shock protein CspE [Shigella flexneri CDC 796-83] gi|320193030|gb|EFW67670.1| Cold shock protein CspE [Escherichia coli O157:H7 str. EC1212] gi|320194194|gb|EFW68826.1| Cold shock protein CspE [Escherichia coli WV_060327] gi|320198250|gb|EFW72854.1| Cold shock protein CspE [Escherichia coli EC4100B] gi|320638073|gb|EFX07837.1| cold shock protein CspE [Escherichia coli O157:H7 str. G5101] gi|320643479|gb|EFX12649.1| cold shock protein CspE [Escherichia coli O157:H- str. 493-89] gi|320648814|gb|EFX17441.1| cold shock protein CspE [Escherichia coli O157:H- str. H 2687] gi|320654400|gb|EFX22447.1| cold shock protein CspE [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660081|gb|EFX27611.1| cold shock protein CspE [Escherichia coli O55:H7 str. USDA 5905] gi|320664878|gb|EFX32013.1| cold shock protein CspE [Escherichia coli O157:H7 str. LSU-61] gi|323153655|gb|EFZ39903.1| cold shock-like protein cspI [Escherichia coli EPECa14] gi|323158923|gb|EFZ44934.1| cold shock-like protein cspI [Escherichia coli E128010] gi|323164078|gb|EFZ49886.1| cold shock-like protein cspI [Shigella sonnei 53G] gi|323170751|gb|EFZ56401.1| cold shock-like protein cspI [Escherichia coli LT-68] gi|323179900|gb|EFZ65457.1| cold shock-like protein cspI [Escherichia coli 1180] gi|323184883|gb|EFZ70251.1| cold shock-like protein cspI [Escherichia coli 1357] gi|323191262|gb|EFZ76526.1| cold shock-like protein cspI [Escherichia coli RN587/1] gi|323379557|gb|ADX51825.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323938386|gb|EGB34640.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1520] gi|323943038|gb|EGB39197.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323945099|gb|EGB41161.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323952798|gb|EGB48666.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H252] gi|323958382|gb|EGB54088.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H263] gi|323963193|gb|EGB58761.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H489] gi|323967571|gb|EGB62987.1| cold-shock DNA-binding domain-containing protein [Escherichia coli M863] gi|323972078|gb|EGB67292.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|323976394|gb|EGB71484.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TW10509] gi|324006340|gb|EGB75559.1| cold shock protein CspE [Escherichia coli MS 57-2] gi|324010499|gb|EGB79718.1| cold shock protein CspE [Escherichia coli MS 60-1] gi|324016114|gb|EGB85333.1| cold shock protein CspE [Escherichia coli MS 117-3] gi|324114747|gb|EGC08715.1| cold-shock DNA-binding domain-containing protein [Escherichia fergusonii B253] gi|324116698|gb|EGC10613.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1167] gi|325498195|gb|EGC96054.1| cold shock protein CspE [Escherichia fergusonii ECD227] gi|326341375|gb|EGD65167.1| Cold shock protein CspE [Escherichia coli O157:H7 str. 1044] gi|326345847|gb|EGD69586.1| Cold shock protein CspE [Escherichia coli O157:H7 str. 1125] gi|327254308|gb|EGE65930.1| cold shock-like protein cspI [Escherichia coli STEC_7v] gi|330910385|gb|EGH38895.1| cold shock protein CspE [Escherichia coli AA86] gi|331054899|gb|EGI26908.1| cold shock protein [Escherichia coli TA206] gi|331060410|gb|EGI32374.1| cold shock protein [Escherichia coli TA143] gi|331066200|gb|EGI38084.1| cold shock protein [Escherichia coli TA271] gi|331080724|gb|EGI51898.1| cold shock protein [Escherichia coli H299] gi|332094296|gb|EGI99347.1| cold shock-like protein cspI [Shigella boydii 5216-82] gi|332096862|gb|EGJ01852.1| cold shock-like protein cspI [Shigella dysenteriae 155-74] gi|332341970|gb|AEE55304.1| cold shock-like protein CspI [Escherichia coli UMNK88] gi|332761006|gb|EGJ91294.1| cold shock-like protein cspI [Shigella flexneri 4343-70] gi|332761185|gb|EGJ91471.1| cold shock-like protein cspI [Shigella flexneri 2747-71] gi|332763377|gb|EGJ93617.1| cold shock-like protein cspI [Shigella flexneri K-671] gi|332768274|gb|EGJ98459.1| transcription antiterminator and regulator of RNA stability [Shigella flexneri 2930-71] gi|333007465|gb|EGK26945.1| cold shock-like protein cspI [Shigella flexneri VA-6] gi|333008038|gb|EGK27514.1| cold shock-like protein cspI [Shigella flexneri K-218] gi|333010035|gb|EGK29470.1| cold shock-like protein cspI [Shigella flexneri K-272] gi|333020868|gb|EGK40128.1| cold shock-like protein cspI [Shigella flexneri K-227] gi|333021570|gb|EGK40820.1| cold shock-like protein cspI [Shigella flexneri K-304] Length = 69 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ + N A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVIAL 69 >gi|291085708|ref|ZP_06353810.2| putative cold shock protein [Citrobacter youngae ATCC 29220] gi|291070213|gb|EFE08322.1| putative cold shock protein [Citrobacter youngae ATCC 29220] Length = 100 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ + N A G Sbjct: 36 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 91 Query: 64 KYSAENLKL 72 +A + L Sbjct: 92 PSAANVIAL 100 >gi|328880509|emb|CCA53748.1| cold shock protein [Streptomyces venezuelae ATCC 10712] Length = 67 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G DVF H S +A++G L EGQ VT+D Q + Sbjct: 4 GTVKWFNSEKGFGFIEQEGG---GPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|157146760|ref|YP_001454079.1| cold shock protein CspE [Citrobacter koseri ATCC BAA-895] gi|157083965|gb|ABV13643.1| hypothetical protein CKO_02534 [Citrobacter koseri ATCC BAA-895] Length = 100 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ + N A G Sbjct: 36 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 91 Query: 64 KYSAENLKL 72 +A + L Sbjct: 92 PSAANVIAL 100 >gi|163801267|ref|ZP_02195166.1| cold-shock DNA-binding domain protein [Vibrio sp. AND4] gi|159174756|gb|EDP59556.1| cold-shock DNA-binding domain protein [Vibrio sp. AND4] Length = 70 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 GS+KW+N KG+GFITP+ G D+F+H ++AS G LTEGQ V+++ Q + Sbjct: 7 GSVKWFNESKGFGFITPD---NGGSDLFVHFKSIASEGFKTLTEGQKVSFNVEQGN 59 >gi|329888180|ref|ZP_08266778.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC 11568] gi|328846736|gb|EGF96298.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC 11568] Length = 67 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP KG+GFI P+ G DVF+H +AV AGL L + V Y+ GK Sbjct: 4 GTVKWFNPTKGFGFIQPD---TGGADVFVHITAVQKAGLVGLDDNAKVEYEL--ETQRGK 58 Query: 65 YSAENLKLV 73 SA +LKL+ Sbjct: 59 TSAVDLKLL 67 >gi|251790554|ref|YP_003005275.1| cold shock protein CspE [Dickeya zeae Ech1591] gi|271499690|ref|YP_003332715.1| cold-shock DNA-binding domain-containing protein [Dickeya dadantii Ech586] gi|307130032|ref|YP_003882048.1| DNA-binding transcriptional repressor [Dickeya dadantii 3937] gi|247539175|gb|ACT07796.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591] gi|270343245|gb|ACZ76010.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586] gi|306527561|gb|ADM97491.1| DNA-binding transcriptional repressor [Dickeya dadantii 3937] Length = 69 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + + A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFE-ITSGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|239616519|ref|YP_002939841.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF 19.5.1] gi|239505350|gb|ACR78837.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF 19.5.1] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFIT + G+DVF+H S + S G L EGQ V +D ++N G Sbjct: 2 KGTVKWFNAQKGYGFITR----DEGEDVFIHFSGIVSDGFKTLEEGQRVEFD-IENGQKG 56 Query: 64 KYSAENLKLVP 74 A N+K V Sbjct: 57 A-QAVNVKTVE 66 >gi|329116681|ref|ZP_08245398.1| major cold shock protein CspA [Streptococcus parauberis NCFD 2020] gi|326907086|gb|EGE54000.1| major cold shock protein CspA [Streptococcus parauberis NCFD 2020] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI STE+G DVF H SA+ S G +L EGQ V +D V+ G Sbjct: 3 QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQSNGFKSLDEGQKVEFD-VEEGQRG 57 Query: 64 KYSAENLKL 72 + +KL Sbjct: 58 PQAVNIVKL 66 >gi|30265215|ref|NP_847592.1| cold shock protein CspC [Bacillus anthracis str. Ames] gi|47778401|ref|YP_022086.2| cold shock protein CspC [Bacillus anthracis str. 'Ames Ancestor'] gi|196039541|ref|ZP_03106846.1| cold shock protein CspC [Bacillus cereus NVH0597-99] gi|218232486|ref|YP_002369965.1| cold shock protein CspC [Bacillus cereus B4264] gi|218900310|ref|YP_002448721.1| cold shock protein CspC [Bacillus cereus G9842] gi|227817950|ref|YP_002817959.1| cold shock protein CspC [Bacillus anthracis str. CDC 684] gi|228911024|ref|ZP_04074832.1| hypothetical protein bthur0013_51650 [Bacillus thuringiensis IBL 200] gi|228917794|ref|ZP_04081333.1| hypothetical protein bthur0012_49970 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228955435|ref|ZP_04117440.1| hypothetical protein bthur0006_47910 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228968291|ref|ZP_04129289.1| hypothetical protein bthur0004_50700 [Bacillus thuringiensis serovar sotto str. T04001] gi|229050851|ref|ZP_04194403.1| hypothetical protein bcere0027_48060 [Bacillus cereus AH676] gi|229063847|ref|ZP_04200151.1| hypothetical protein bcere0026_49080 [Bacillus cereus AH603] gi|229072644|ref|ZP_04205846.1| hypothetical protein bcere0025_48050 [Bacillus cereus F65185] gi|229112598|ref|ZP_04242135.1| hypothetical protein bcere0018_48380 [Bacillus cereus Rock1-15] gi|229158754|ref|ZP_04286812.1| hypothetical protein bcere0010_49270 [Bacillus cereus ATCC 4342] gi|229169899|ref|ZP_04297595.1| hypothetical protein bcere0007_48390 [Bacillus cereus AH621] gi|229181451|ref|ZP_04308779.1| hypothetical protein bcere0005_47920 [Bacillus cereus 172560W] gi|254724384|ref|ZP_05186168.1| cold shock protein CspC [Bacillus anthracis str. A1055] gi|254735591|ref|ZP_05193298.1| cold shock protein CspC [Bacillus anthracis str. Western North America USA6153] gi|49040749|sp|P62169|CSPC_BACAN RecName: Full=Cold shock-like protein CspC gi|49061093|sp|P62170|CSPC_BACCE RecName: Full=Cold shock-like protein CspC gi|49061097|sp|P62171|CSPC_BACCR RecName: Full=Cold shock-like protein CspC gi|1405474|emb|CAA63609.1| CspC protein [Bacillus cereus] gi|30259892|gb|AAP29078.1| cold shock protein CspC [Bacillus anthracis str. Ames] gi|47552106|gb|AAT34561.2| cold shock protein CspC [Bacillus anthracis str. 'Ames Ancestor'] gi|196029701|gb|EDX68303.1| cold shock protein CspC [Bacillus cereus NVH0597-99] gi|218160443|gb|ACK60435.1| cold shock protein CspC [Bacillus cereus B4264] gi|218544035|gb|ACK96429.1| cold shock protein CspC [Bacillus cereus G9842] gi|227003474|gb|ACP13217.1| cold shock protein CspC [Bacillus anthracis str. CDC 684] gi|228602026|gb|EEK59519.1| hypothetical protein bcere0005_47920 [Bacillus cereus 172560W] gi|228613613|gb|EEK70742.1| hypothetical protein bcere0007_48390 [Bacillus cereus AH621] gi|228624738|gb|EEK81507.1| hypothetical protein bcere0010_49270 [Bacillus cereus ATCC 4342] gi|228670978|gb|EEL26285.1| hypothetical protein bcere0018_48380 [Bacillus cereus Rock1-15] gi|228710620|gb|EEL62593.1| hypothetical protein bcere0025_48050 [Bacillus cereus F65185] gi|228716484|gb|EEL68188.1| hypothetical protein bcere0026_49080 [Bacillus cereus AH603] gi|228722507|gb|EEL73900.1| hypothetical protein bcere0027_48060 [Bacillus cereus AH676] gi|228791464|gb|EEM39068.1| hypothetical protein bthur0004_50700 [Bacillus thuringiensis serovar sotto str. T04001] gi|228804227|gb|EEM50841.1| hypothetical protein bthur0006_47910 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228841843|gb|EEM86951.1| hypothetical protein bthur0012_49970 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228848679|gb|EEM93525.1| hypothetical protein bthur0013_51650 [Bacillus thuringiensis IBL 200] Length = 65 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + A G Sbjct: 2 QGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|78067321|ref|YP_370090.1| cold-shock DNA-binding protein family protein [Burkholderia sp. 383] gi|107023458|ref|YP_621785.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia AU 1054] gi|116690540|ref|YP_836163.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia HI2424] gi|170733881|ref|YP_001765828.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|254247419|ref|ZP_04940740.1| Cold shock protein [Burkholderia cenocepacia PC184] gi|77968066|gb|ABB09446.1| cold-shock DNA-binding protein family [Burkholderia sp. 383] gi|105893647|gb|ABF76812.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia AU 1054] gi|116648629|gb|ABK09270.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia HI2424] gi|124872195|gb|EAY63911.1| Cold shock protein [Burkholderia cenocepacia PC184] gi|169817123|gb|ACA91706.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia MC0-3] Length = 67 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D VQ Sbjct: 4 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAITMNGFKTLKEGQKVSFDVVQ 54 >gi|302865133|ref|YP_003833770.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029] gi|315501633|ref|YP_004080520.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|302567992|gb|ADL44194.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC 27029] gi|315408252|gb|ADU06369.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] Length = 67 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFI+P+ + G DVF H SA++++G +L E Q V +D Q + Sbjct: 4 GTVKWFNADKGFGFISPD---DGGADVFAHFSAISASGFRSLDENQKVEFDITQGQKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENIR 65 >gi|323339641|ref|ZP_08079913.1| cold-shock domain family protein [Lactobacillus ruminis ATCC 25644] gi|323092937|gb|EFZ35537.1| cold-shock domain family protein [Lactobacillus ruminis ATCC 25644] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ VT+D V+ Sbjct: 1 MEQGTVKWFNAEKGYGFITR----EDGSDVFVHFSAIQGEGYKSLEEGQHVTFD-VEEGQ 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGLQAANVVK 65 >gi|227551933|ref|ZP_03981982.1| cold-shock protein [Enterococcus faecium TX1330] gi|257886902|ref|ZP_05666555.1| cold-shock protein [Enterococcus faecium 1,141,733] gi|257895473|ref|ZP_05675126.1| cold-shock protein [Enterococcus faecium Com12] gi|257898089|ref|ZP_05677742.1| cold-shock protein [Enterococcus faecium Com15] gi|293378339|ref|ZP_06624508.1| major cold shock protein CspA [Enterococcus faecium PC4.1] gi|293568617|ref|ZP_06679932.1| cold-shock protein [Enterococcus faecium E1071] gi|227178934|gb|EEI59906.1| cold-shock protein [Enterococcus faecium TX1330] gi|257822956|gb|EEV49888.1| cold-shock protein [Enterococcus faecium 1,141,733] gi|257832038|gb|EEV58459.1| cold-shock protein [Enterococcus faecium Com12] gi|257836001|gb|EEV61075.1| cold-shock protein [Enterococcus faecium Com15] gi|291588577|gb|EFF20410.1| cold-shock protein [Enterococcus faecium E1071] gi|292643203|gb|EFF61344.1| major cold shock protein CspA [Enterococcus faecium PC4.1] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N +KG+GFIT E +G+DVF+H SA+ G L EGQ VT+D Sbjct: 1 METGTVKWFNSEKGFGFITAE----NGNDVFVHFSAIQGDGFKTLEEGQTVTFD 50 >gi|226311237|ref|YP_002771131.1| cold shock protein [Brevibacillus brevis NBRC 100599] gi|226094185|dbj|BAH42627.1| cold shock protein [Brevibacillus brevis NBRC 100599] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KG+GFI +G GDDVF+H SA+ G +L EGQ V +D V+N Sbjct: 1 MERGRVKWFNSEKGFGFIERDG----GDDVFVHFSAIQGEGYKSLDEGQEVEFD-VENGQ 55 Query: 62 NGKYSAENLKL 72 G + KL Sbjct: 56 RGPQATNVRKL 66 >gi|260597574|ref|YP_003210145.1| Cold shock-like protein cspB [Cronobacter turicensis z3032] gi|260216751|emb|CBA30171.1| Cold shock-like protein cspB [Cronobacter turicensis z3032] Length = 70 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 6/74 (8%) Query: 1 MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M +R GS+KW+N DKG+GFI P T+ DVF+H SA+ S LTEGQ V + V+ Sbjct: 1 MANRMNGSVKWFNADKGFGFIAP---TDGSKDVFVHFSAIQSDNFRTLTEGQQVEFS-VE 56 Query: 59 NDANGKYSAENLKL 72 N A G + + L Sbjct: 57 NGAKGPSAVNVVAL 70 >gi|257868635|ref|ZP_05648288.1| DNA-binding cold-shock protein [Enterococcus gallinarum EG2] gi|257802799|gb|EEV31621.1| DNA-binding cold-shock protein [Enterococcus gallinarum EG2] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ VT+D Sbjct: 1 MNNGTVKWFNADKGFGFITG----EDGNDVFAHFSAIQGDGFKTLDEGQAVTFD 50 >gi|302878597|ref|YP_003847161.1| cold-shock DNA-binding domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581386|gb|ADL55397.1| cold-shock DNA-binding domain protein [Gallionella capsiferriformans ES-2] Length = 68 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI+P+ + GDD+F H SA+ +G +L EGQ +++D Q Sbjct: 4 GTVKWFNDEKGFGFISPD---DGGDDLFAHFSAINISGFKSLKEGQKISFDVAQGPKG-- 58 Query: 65 YSAENLKLV 73 A N+++V Sbjct: 59 RQASNIQIV 67 >gi|15890768|ref|NP_356440.1| cold shock protein [Agrobacterium tumefaciens str. C58] gi|15159048|gb|AAK89225.1| cold shock protein [Agrobacterium tumefaciens str. C58] Length = 76 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++ DKG+GFITP+ G DVF+H SAV G +L +GQ V+Y+ Q+ GK Sbjct: 13 GTVKFFAQDKGFGFITPD---NGGPDVFVHISAVGFGG--SLQDGQKVSYELGQDRKTGK 67 Query: 65 YSAENLKLV 73 AEN+ L+ Sbjct: 68 SKAENVTLL 76 >gi|294500562|ref|YP_003564262.1| cold shock protein [Bacillus megaterium QM B1551] gi|295705915|ref|YP_003598990.1| cold shock protein [Bacillus megaterium DSM 319] gi|294350499|gb|ADE70828.1| cold shock protein [Bacillus megaterium QM B1551] gi|294803574|gb|ADF40640.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI EG G+DVF+H SA+ G +L EGQ VT+D Q Sbjct: 3 EGTVKWFNAEKGFGFIEIEG----GEDVFVHFSAIQGDGFKSLDEGQKVTFDIEQ 53 >gi|255264493|ref|ZP_05343835.1| conserved domain protein [Thalassiobium sp. R2A62] gi|255106828|gb|EET49502.1| conserved domain protein [Thalassiobium sp. R2A62] Length = 69 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+G ++ DVF+H SAV +GL L + Q V +D ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPDGGSK---DVFVHISAVERSGLTGLADNQKVNFD-IEAGRDGR 59 Query: 65 YSAENL 70 SA N+ Sbjct: 60 ESAINI 65 >gi|83951672|ref|ZP_00960404.1| cold shock family protein [Roseovarius nubinhibens ISM] gi|83836678|gb|EAP75975.1| cold shock family protein [Roseovarius nubinhibens ISM] Length = 68 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H SAV +GL L + Q V Y+ +Q+ +G+ Sbjct: 4 GTVKWFNTTKGYGFIAPD---DGGKDVFVHISAVERSGLTGLADEQKVGYE-LQDGRDGR 59 Query: 65 YSAENLKLV 73 A +L L+ Sbjct: 60 QMASDLTLL 68 >gi|284031585|ref|YP_003381516.1| cold-shock DNA-binding domain-containing protein [Kribbella flavida DSM 17836] gi|283810878|gb|ADB32717.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM 17836] Length = 67 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFITP+ + G DVF H SA+ ++G +L E Q V ++ Q Sbjct: 4 GTVKWFNADKGFGFITPD---DGGADVFAHYSAIQTSGFRSLDENQRVEFEITQGQKG-- 58 Query: 65 YSAENLKLV 73 AEN++ + Sbjct: 59 LQAENIRPI 67 >gi|206561070|ref|YP_002231835.1| cold shock-like protein [Burkholderia cenocepacia J2315] gi|198037112|emb|CAR53033.1| cold shock-like protein [Burkholderia cenocepacia J2315] Length = 67 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D VQ GK Sbjct: 4 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAITMNGFKTLKEGQKVSFDVVQG-PKGK 59 Query: 65 YSAENLKLV 73 A N++ V Sbjct: 60 -QASNIQAV 67 >gi|315642390|ref|ZP_07896985.1| cold shock protein CspA [Enterococcus italicus DSM 15952] gi|315482298|gb|EFU72851.1| cold shock protein CspA [Enterococcus italicus DSM 15952] Length = 96 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +++G++KW+N +KG+GFIT E +G DVF H SA+ + G +L EGQ VT+D Sbjct: 31 MNKGTVKWFNAEKGFGFITGE----NGQDVFAHFSAIQADGFKSLDEGQAVTFD 80 >gi|302533879|ref|ZP_07286221.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302442774|gb|EFL14590.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 67 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G LTEGQ VT+D Q + Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIATQGFRELTEGQRVTFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|157374396|ref|YP_001472996.1| putative cold shock-like protein [Shewanella sediminis HAW-EB3] gi|157316770|gb|ABV35868.1| putative Cold shock-like protein [Shewanella sediminis HAW-EB3] Length = 70 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI+ E GDDVF+H A+AS G L EGQ V+++ Q Sbjct: 7 GTVKWFNEEKGFGFISQE---NGGDDVFVHFRAIASDGFKTLAEGQKVSFEVEQ 57 >gi|159036600|ref|YP_001535853.1| cold-shock DNA-binding domain-containing protein [Salinispora arenicola CNS-205] gi|157915435|gb|ABV96862.1| cold-shock DNA-binding domain protein [Salinispora arenicola CNS-205] Length = 67 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFI+P+G G DVF H SA++++G +L E Q V ++ Q + Sbjct: 4 GTVKWFNADKGFGFISPDG---GGADVFAHFSAISASGFRSLDENQKVEFEITQGQKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENIR 65 >gi|69247317|ref|ZP_00604299.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] gi|257879979|ref|ZP_05659632.1| cold-shock protein [Enterococcus faecium 1,230,933] gi|257883090|ref|ZP_05662743.1| cold-shock protein [Enterococcus faecium 1,231,502] gi|257884117|ref|ZP_05663770.1| cold-shock protein [Enterococcus faecium 1,231,501] gi|257890488|ref|ZP_05670141.1| cold-shock protein [Enterococcus faecium 1,231,410] gi|257894415|ref|ZP_05674068.1| cold-shock protein [Enterococcus faecium 1,231,408] gi|258614362|ref|ZP_05712132.1| cold-shock domain-contain protein [Enterococcus faecium DO] gi|260558929|ref|ZP_05831116.1| cold-shock protein [Enterococcus faecium C68] gi|261209452|ref|ZP_05923815.1| cold-shock protein [Enterococcus faecium TC 6] gi|289567727|ref|ZP_06448016.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF] gi|293553822|ref|ZP_06674437.1| cold-shock protein [Enterococcus faecium E1039] gi|293559767|ref|ZP_06676287.1| cold shock protein [Enterococcus faecium E1162] gi|293571661|ref|ZP_06682682.1| cold-shock protein [Enterococcus faecium E980] gi|294616363|ref|ZP_06696156.1| cold-shock protein [Enterococcus faecium E1636] gi|294619946|ref|ZP_06699319.1| cold shock protein [Enterococcus faecium E1679] gi|294622017|ref|ZP_06701160.1| cold shock protein [Enterococcus faecium U0317] gi|314940163|ref|ZP_07847341.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|314942420|ref|ZP_07849263.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|314950182|ref|ZP_07853467.1| major cold shock protein CspA [Enterococcus faecium TX0082] gi|314952304|ref|ZP_07855315.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|314994253|ref|ZP_07859556.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|314997168|ref|ZP_07862154.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|68194887|gb|EAN09358.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] gi|257814207|gb|EEV42965.1| cold-shock protein [Enterococcus faecium 1,230,933] gi|257818748|gb|EEV46076.1| cold-shock protein [Enterococcus faecium 1,231,502] gi|257819955|gb|EEV47103.1| cold-shock protein [Enterococcus faecium 1,231,501] gi|257826848|gb|EEV53474.1| cold-shock protein [Enterococcus faecium 1,231,410] gi|257830794|gb|EEV57401.1| cold-shock protein [Enterococcus faecium 1,231,408] gi|260075037|gb|EEW63352.1| cold-shock protein [Enterococcus faecium C68] gi|260076580|gb|EEW64344.1| cold-shock protein [Enterococcus faecium TC 6] gi|289160477|gb|EFD08488.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF] gi|291590877|gb|EFF22593.1| cold-shock protein [Enterococcus faecium E1636] gi|291593803|gb|EFF25304.1| cold shock protein [Enterococcus faecium E1679] gi|291598407|gb|EFF29481.1| cold shock protein [Enterococcus faecium U0317] gi|291602028|gb|EFF32265.1| cold-shock protein [Enterococcus faecium E1039] gi|291606250|gb|EFF35664.1| cold shock protein [Enterococcus faecium E1162] gi|291608331|gb|EFF37632.1| cold-shock protein [Enterococcus faecium E980] gi|313588742|gb|EFR67587.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|313591340|gb|EFR70185.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|313595563|gb|EFR74408.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|313598820|gb|EFR77665.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|313640602|gb|EFS05182.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|313643492|gb|EFS08072.1| major cold shock protein CspA [Enterococcus faecium TX0082] Length = 66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N +KG+GFIT E +G+DVF+H SA+ G L EGQ VT+D Sbjct: 1 METGTVKWFNSEKGFGFITAE----NGNDVFVHFSAIQGDGFKTLEEGQAVTFD 50 >gi|330447209|ref|ZP_08310859.1| 'Cold-shock' DNA-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491400|dbj|GAA05356.1| 'Cold-shock' DNA-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 71 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V++D Q Sbjct: 8 GSVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQ 58 >gi|294499936|ref|YP_003563636.1| cold shock protein [Bacillus megaterium QM B1551] gi|295705319|ref|YP_003598394.1| cold shock protein [Bacillus megaterium DSM 319] gi|294349873|gb|ADE70202.1| cold shock protein [Bacillus megaterium QM B1551] gi|294802978|gb|ADF40044.1| cold shock protein [Bacillus megaterium DSM 319] Length = 65 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ VT++ V+ + Sbjct: 3 QGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQEVTFEIVEGN 55 >gi|126699599|ref|YP_001088496.1| cold shock protein [Clostridium difficile 630] gi|254975590|ref|ZP_05272062.1| cold shock protein [Clostridium difficile QCD-66c26] gi|255092978|ref|ZP_05322456.1| cold shock protein [Clostridium difficile CIP 107932] gi|255101124|ref|ZP_05330101.1| cold shock protein [Clostridium difficile QCD-63q42] gi|255306991|ref|ZP_05351162.1| cold shock protein [Clostridium difficile ATCC 43255] gi|255314719|ref|ZP_05356302.1| cold shock protein [Clostridium difficile QCD-76w55] gi|255517393|ref|ZP_05385069.1| cold shock protein [Clostridium difficile QCD-97b34] gi|255650500|ref|ZP_05397402.1| cold shock protein [Clostridium difficile QCD-37x79] gi|260683608|ref|YP_003214893.1| cold shock protein [Clostridium difficile CD196] gi|260687268|ref|YP_003218402.1| cold shock protein [Clostridium difficile R20291] gi|306520461|ref|ZP_07406808.1| cold shock protein [Clostridium difficile QCD-32g58] gi|115251036|emb|CAJ68867.1| Major cold shock protein CspC [Clostridium difficile] gi|260209771|emb|CBA63577.1| cold shock protein [Clostridium difficile CD196] gi|260213285|emb|CBE04832.1| cold shock protein [Clostridium difficile R20291] Length = 66 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFI+ EG DDVF H SA+ ++G +L EGQ V++D V+ A Sbjct: 1 MNNGIVKWFNNEKGFGFISMEGR----DDVFAHFSAIQTSGFKSLEEGQQVSFDIVKG-A 55 Query: 62 NGKYSAENLKLV 73 G AEN+ ++ Sbjct: 56 RGP-QAENITIL 66 >gi|13625473|gb|AAK35071.1|AF363392_1 cold acclimation protein CapB [Pseudomonas sp. 30/3] Length = 69 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V+ ++ Sbjct: 7 GTVKWFNDEKGFGFITP----QSGDDLFVHFKAIPSDGFKSLKEGQQVS--FIATRGQKG 60 Query: 65 YSAENLKLV 73 AE ++++ Sbjct: 61 MQAEEVQVI 69 >gi|29375934|ref|NP_815088.1| cold-shock domain-contain protein [Enterococcus faecalis V583] gi|227518631|ref|ZP_03948680.1| cold-shock protein [Enterococcus faecalis TX0104] gi|227553162|ref|ZP_03983211.1| cold-shock protein [Enterococcus faecalis HH22] gi|229545951|ref|ZP_04434676.1| cold-shock protein [Enterococcus faecalis TX1322] gi|229550143|ref|ZP_04438868.1| cold-shock protein [Enterococcus faecalis ATCC 29200] gi|255972920|ref|ZP_05423506.1| cold-shock protein [Enterococcus faecalis T1] gi|255975974|ref|ZP_05426560.1| cold-shock protein [Enterococcus faecalis T2] gi|256618947|ref|ZP_05475793.1| cold-shock protein [Enterococcus faecalis ATCC 4200] gi|256762374|ref|ZP_05502954.1| cold-shock protein [Enterococcus faecalis T3] gi|256853004|ref|ZP_05558374.1| cold-shock domain-contain protein [Enterococcus faecalis T8] gi|256958857|ref|ZP_05563028.1| cold-shock protein [Enterococcus faecalis DS5] gi|256962049|ref|ZP_05566220.1| cold-shock protein [Enterococcus faecalis Merz96] gi|256965247|ref|ZP_05569418.1| cold-shock protein [Enterococcus faecalis HIP11704] gi|257078889|ref|ZP_05573250.1| cold-shock protein [Enterococcus faecalis JH1] gi|257082664|ref|ZP_05577025.1| cold-shock domain-containing protein [Enterococcus faecalis E1Sol] gi|257085373|ref|ZP_05579734.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1] gi|257086868|ref|ZP_05581229.1| cold-shock protein [Enterococcus faecalis D6] gi|257089761|ref|ZP_05584122.1| cold-shock protein [Enterococcus faecalis CH188] gi|257415977|ref|ZP_05592971.1| cold-shock protein [Enterococcus faecalis AR01/DG] gi|257419179|ref|ZP_05596173.1| cold-shock protein [Enterococcus faecalis T11] gi|257422743|ref|ZP_05599733.1| cold shock protein [Enterococcus faecalis X98] gi|293383071|ref|ZP_06628989.1| conserved domain protein [Enterococcus faecalis R712] gi|293387776|ref|ZP_06632320.1| conserved domain protein [Enterococcus faecalis S613] gi|294779559|ref|ZP_06744953.1| cold-shock DNA-binding domain protein [Enterococcus faecalis PC1.1] gi|300860884|ref|ZP_07106971.1| cold shock protein CspB [Enterococcus faecalis TUSoD Ef11] gi|307271144|ref|ZP_07552427.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|307273351|ref|ZP_07554596.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|307277496|ref|ZP_07558588.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|307279174|ref|ZP_07560232.1| major cold shock protein CspA [Enterococcus faecalis TX0860] gi|307288138|ref|ZP_07568148.1| major cold shock protein CspA [Enterococcus faecalis TX0109] gi|307291351|ref|ZP_07571235.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|312900628|ref|ZP_07759925.1| major cold shock protein CspA [Enterococcus faecalis TX0470] gi|312904110|ref|ZP_07763278.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|312907339|ref|ZP_07766330.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512] gi|312909956|ref|ZP_07768804.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516] gi|312952370|ref|ZP_07771245.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|29343396|gb|AAO81158.1| cold-shock domain family protein [Enterococcus faecalis V583] gi|227073926|gb|EEI11889.1| cold-shock protein [Enterococcus faecalis TX0104] gi|227177688|gb|EEI58660.1| cold-shock protein [Enterococcus faecalis HH22] gi|229304729|gb|EEN70725.1| cold-shock protein [Enterococcus faecalis ATCC 29200] gi|229308914|gb|EEN74901.1| cold-shock protein [Enterococcus faecalis TX1322] gi|255963938|gb|EET96414.1| cold-shock protein [Enterococcus faecalis T1] gi|255968846|gb|EET99468.1| cold-shock protein [Enterococcus faecalis T2] gi|256598474|gb|EEU17650.1| cold-shock protein [Enterococcus faecalis ATCC 4200] gi|256683625|gb|EEU23320.1| cold-shock protein [Enterococcus faecalis T3] gi|256711463|gb|EEU26501.1| cold-shock domain-contain protein [Enterococcus faecalis T8] gi|256949353|gb|EEU65985.1| cold-shock protein [Enterococcus faecalis DS5] gi|256952545|gb|EEU69177.1| cold-shock protein [Enterococcus faecalis Merz96] gi|256955743|gb|EEU72375.1| cold-shock protein [Enterococcus faecalis HIP11704] gi|256986919|gb|EEU74221.1| cold-shock protein [Enterococcus faecalis JH1] gi|256990694|gb|EEU77996.1| cold-shock domain-containing protein [Enterococcus faecalis E1Sol] gi|256993403|gb|EEU80705.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1] gi|256994898|gb|EEU82200.1| cold-shock protein [Enterococcus faecalis D6] gi|256998573|gb|EEU85093.1| cold-shock protein [Enterococcus faecalis CH188] gi|257157805|gb|EEU87765.1| cold-shock protein [Enterococcus faecalis ARO1/DG] gi|257161007|gb|EEU90967.1| cold-shock protein [Enterococcus faecalis T11] gi|257164567|gb|EEU94527.1| cold shock protein [Enterococcus faecalis X98] gi|291079736|gb|EFE17100.1| conserved domain protein [Enterococcus faecalis R712] gi|291082846|gb|EFE19809.1| conserved domain protein [Enterococcus faecalis S613] gi|294453349|gb|EFG21757.1| cold-shock DNA-binding domain protein [Enterococcus faecalis PC1.1] gi|295112888|emb|CBL31525.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76] gi|300849923|gb|EFK77673.1| cold shock protein CspB [Enterococcus faecalis TUSoD Ef11] gi|306497582|gb|EFM67115.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|306500874|gb|EFM70192.1| major cold shock protein CspA [Enterococcus faecalis TX0109] gi|306504299|gb|EFM73511.1| major cold shock protein CspA [Enterococcus faecalis TX0860] gi|306505761|gb|EFM74939.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|306509878|gb|EFM78903.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|306512642|gb|EFM81291.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|310626367|gb|EFQ09650.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512] gi|310629754|gb|EFQ13037.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|310632586|gb|EFQ15869.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|311289914|gb|EFQ68470.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516] gi|311292109|gb|EFQ70665.1| major cold shock protein CspA [Enterococcus faecalis TX0470] gi|315027392|gb|EFT39324.1| major cold shock protein CspA [Enterococcus faecalis TX2137] gi|315030013|gb|EFT41945.1| major cold shock protein CspA [Enterococcus faecalis TX4000] gi|315033768|gb|EFT45700.1| major cold shock protein CspA [Enterococcus faecalis TX0017] gi|315036854|gb|EFT48786.1| major cold shock protein CspA [Enterococcus faecalis TX0027] gi|315145675|gb|EFT89691.1| major cold shock protein CspA [Enterococcus faecalis TX2141] gi|315147863|gb|EFT91879.1| major cold shock protein CspA [Enterococcus faecalis TX4244] gi|315150659|gb|EFT94675.1| major cold shock protein CspA [Enterococcus faecalis TX0012] gi|315153333|gb|EFT97349.1| major cold shock protein CspA [Enterococcus faecalis TX0031] gi|315155889|gb|EFT99905.1| major cold shock protein CspA [Enterococcus faecalis TX0043] gi|315157943|gb|EFU01960.1| major cold shock protein CspA [Enterococcus faecalis TX0312] gi|315160238|gb|EFU04255.1| major cold shock protein CspA [Enterococcus faecalis TX0645] gi|315164246|gb|EFU08263.1| major cold shock protein CspA [Enterococcus faecalis TX1302] gi|315166660|gb|EFU10677.1| major cold shock protein CspA [Enterococcus faecalis TX1341] gi|315170056|gb|EFU14073.1| major cold shock protein CspA [Enterococcus faecalis TX1342] gi|315174446|gb|EFU18463.1| major cold shock protein CspA [Enterococcus faecalis TX1346] gi|315575578|gb|EFU87769.1| major cold shock protein CspA [Enterococcus faecalis TX0309B] gi|315578455|gb|EFU90646.1| major cold shock protein CspA [Enterococcus faecalis TX0630] gi|315579980|gb|EFU92171.1| major cold shock protein CspA [Enterococcus faecalis TX0309A] gi|323480602|gb|ADX80041.1| Major cold shock protein, CspB [Enterococcus faecalis 62] gi|327535008|gb|AEA93842.1| cold shock protein CspA [Enterococcus faecalis OG1RF] gi|329571445|gb|EGG53132.1| major cold shock protein CspA [Enterococcus faecalis TX1467] Length = 66 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N DKG+GFIT E+G+DVF+H SA+ G L EGQ VT++ Sbjct: 1 METGTVKWFNSDKGFGFITA----ENGNDVFVHFSAIQGDGFKTLEEGQAVTFE 50 >gi|15616172|ref|NP_244477.1| cold-shock protein [Bacillus halodurans C-125] gi|10176234|dbj|BAB07329.1| cold-shock protein [Bacillus halodurans C-125] Length = 65 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ + G L EGQ V +D V+ A G Sbjct: 2 QGKVKWFNAEKGFGFI----EREDGDDVFVHFSAINTDGFKTLDEGQSVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A KL Sbjct: 57 PQAANVTKL 65 >gi|218512700|ref|ZP_03509540.1| cold-shock DNA-binding domain protein [Rhizobium etli 8C-3] Length = 92 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI P+ G D+F+H SAV ++GL LTE Q V++D + D Sbjct: 1 MAETGTVKFFNTDKGFGFIKPD---RGGADIFVHISAVQASGLAGLTENQNVSFD-TEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 RRGK 60 >gi|319653577|ref|ZP_08007676.1| cold-shock domain family protein [Bacillus sp. 2_A_57_CT2] gi|317394776|gb|EFV75515.1| cold-shock domain family protein [Bacillus sp. 2_A_57_CT2] Length = 66 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G +KW+N +KG+GFI EG G+DVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MENGKVKWFNSEKGFGFIEREG----GEDVFVHFSAIQGEGYKSLEEGQEVTFDVEQ 53 >gi|302382206|ref|YP_003818029.1| cold-shock DNA-binding domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192834|gb|ADL00406.1| cold-shock DNA-binding domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 67 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP KG+GFI P+ G DVF+H +AV AGL L E V Y+ GK Sbjct: 4 GTVKWFNPTKGFGFIQPD---SGGADVFVHITAVQKAGLTGLDENAKVEYEL--ESQRGK 58 Query: 65 YSAENLKLV 73 SA +LK++ Sbjct: 59 TSAIDLKVL 67 >gi|78043760|ref|YP_359027.1| cold shock protein CspC [Carboxydothermus hydrogenoformans Z-2901] gi|77995875|gb|ABB14774.1| cold shock protein CspC [Carboxydothermus hydrogenoformans Z-2901] Length = 65 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KGYGFI E G DVF+H SA+ G L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFDPKKGYGFI----EREDGGDVFVHFSAIQEKGFKTLEEGQRVEFEIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|77458156|ref|YP_347661.1| cold-shock DNA-binding protein family protein [Pseudomonas fluorescens Pf0-1] gi|77382159|gb|ABA73672.1| major cold shock protein [Pseudomonas fluorescens Pf0-1] Length = 70 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFITP+G GDD+F+H A+ + G +L EGQ V++ Sbjct: 7 GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIETDGFKSLKEGQTVSF 53 >gi|304403836|ref|ZP_07385498.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] gi|304346814|gb|EFM12646.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] Length = 65 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI E+G+DVF+H SA+ G L EGQ V +D + + G Sbjct: 2 KGTVKWFNAEKGYGFI----QVENGEDVFVHFSAITGEGFKTLEEGQAVEFD-ITDGNRG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|85860247|ref|YP_462449.1| cold shock protein [Syntrophus aciditrophicus SB] gi|85723338|gb|ABC78281.1| cold shock protein [Syntrophus aciditrophicus SB] Length = 67 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G++KW+N KG+GFI + +SG+DVF+H SA+ G L E + V++D VQ Sbjct: 1 MMPEGTVKWFNDSKGFGFI----AQDSGNDVFVHYSAIQGTGFKTLAESERVSFDVVQG- 55 Query: 61 ANGKYSAENLK 71 A G SAEN++ Sbjct: 56 AKGP-SAENVR 65 >gi|295698317|ref|YP_003602972.1| hypothetical protein RIEPE_0091 [Candidatus Riesia pediculicola USDA] gi|291157076|gb|ADD79521.1| conserved domain protein [Candidatus Riesia pediculicola USDA] Length = 69 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFI+PE ++ DVF+H +++ S G LTEGQ V +D ANG Sbjct: 5 KGSVKWFNEAKGFGFISPEDGSK---DVFVHFTSIQSEGFKTLTEGQKVEFDV----ANG 57 Query: 64 KYSAENLKLV 73 + + +V Sbjct: 58 EKGPSAINVV 67 >gi|254752895|ref|ZP_05204931.1| cold shock protein CspB [Bacillus anthracis str. Vollum] gi|254759167|ref|ZP_05211193.1| cold shock protein CspB [Bacillus anthracis str. Australia 94] Length = 66 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNSEKGFGFIEVEG----GEDVFVHXSAIQGEGFKTLEEGQEVTFEVEQGN 55 >gi|29377389|ref|NP_816543.1| cold-shock domain-contain protein [Enterococcus faecalis V583] gi|227518209|ref|ZP_03948258.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis TX0104] gi|227554372|ref|ZP_03984419.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis HH22] gi|229547598|ref|ZP_04436323.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis TX1322] gi|229548194|ref|ZP_04436919.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255970846|ref|ZP_05421432.1| cold-shock protein [Enterococcus faecalis T1] gi|255974421|ref|ZP_05425007.1| cold-shock domain-containing protein [Enterococcus faecalis T2] gi|256618291|ref|ZP_05475137.1| cold-shock DNA-binding protein [Enterococcus faecalis ATCC 4200] gi|256761221|ref|ZP_05501801.1| cold-shock DNA-binding protein family [Enterococcus faecalis T3] gi|256852484|ref|ZP_05557860.1| cold-shock domain-contain protein [Enterococcus faecalis T8] gi|256958160|ref|ZP_05562331.1| cold-shock DNA-binding protein [Enterococcus faecalis DS5] gi|256960306|ref|ZP_05564477.1| cold-shock DNA-binding protein [Enterococcus faecalis Merz96] gi|256962742|ref|ZP_05566913.1| cold-shock DNA-binding protein [Enterococcus faecalis HIP11704] gi|257077433|ref|ZP_05571794.1| cold-shock DNA-binding protein [Enterococcus faecalis JH1] gi|257080702|ref|ZP_05575063.1| cold-shock DNA-binding family protein [Enterococcus faecalis E1Sol] gi|257083376|ref|ZP_05577737.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1] gi|257088066|ref|ZP_05582427.1| cold-shock DNA-binding protein family [Enterococcus faecalis D6] gi|257091145|ref|ZP_05585506.1| cold-shock DNA-binding protein [Enterococcus faecalis CH188] gi|257417092|ref|ZP_05594086.1| cold-shock DNA-binding protein [Enterococcus faecalis AR01/DG] gi|257417806|ref|ZP_05594800.1| cold-shock protein [Enterococcus faecalis T11] gi|257420576|ref|ZP_05597566.1| cold shock protein [Enterococcus faecalis X98] gi|293382174|ref|ZP_06628117.1| conserved domain protein [Enterococcus faecalis R712] gi|293388515|ref|ZP_06633019.1| conserved domain protein [Enterococcus faecalis S613] gi|294779646|ref|ZP_06745037.1| cold-shock DNA-binding domain protein [Enterococcus faecalis PC1.1] gi|300860161|ref|ZP_07106248.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11] gi|307268850|ref|ZP_07550217.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|307272662|ref|ZP_07553910.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|307275091|ref|ZP_07556245.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|307278556|ref|ZP_07559628.1| major cold shock protein CspA [Enterococcus faecalis TX0860] gi|307287380|ref|ZP_07567439.1| major cold shock protein CspA [Enterococcus faecalis TX0109] gi|307290818|ref|ZP_07570712.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|312900401|ref|ZP_07759711.1| major cold shock protein CspA [Enterococcus faecalis TX0470] gi|312902908|ref|ZP_07762105.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|312905731|ref|ZP_07764753.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512] gi|312909074|ref|ZP_07767934.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516] gi|312952213|ref|ZP_07771091.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|29344856|gb|AAO82613.1| cold-shock domain family protein [Enterococcus faecalis V583] gi|227074365|gb|EEI12328.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis TX0104] gi|227176491|gb|EEI57463.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis HH22] gi|229306673|gb|EEN72669.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|229307288|gb|EEN73275.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis TX1322] gi|255961864|gb|EET94340.1| cold-shock protein [Enterococcus faecalis T1] gi|255967293|gb|EET97915.1| cold-shock domain-containing protein [Enterococcus faecalis T2] gi|256597818|gb|EEU16994.1| cold-shock DNA-binding protein [Enterococcus faecalis ATCC 4200] gi|256682472|gb|EEU22167.1| cold-shock DNA-binding protein family [Enterococcus faecalis T3] gi|256712338|gb|EEU27370.1| cold-shock domain-contain protein [Enterococcus faecalis T8] gi|256948656|gb|EEU65288.1| cold-shock DNA-binding protein [Enterococcus faecalis DS5] gi|256950802|gb|EEU67434.1| cold-shock DNA-binding protein [Enterococcus faecalis Merz96] gi|256953238|gb|EEU69870.1| cold-shock DNA-binding protein [Enterococcus faecalis HIP11704] gi|256985463|gb|EEU72765.1| cold-shock DNA-binding protein [Enterococcus faecalis JH1] gi|256988732|gb|EEU76034.1| cold-shock DNA-binding family protein [Enterococcus faecalis E1Sol] gi|256991406|gb|EEU78708.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1] gi|256996096|gb|EEU83398.1| cold-shock DNA-binding protein family [Enterococcus faecalis D6] gi|256999957|gb|EEU86477.1| cold-shock DNA-binding protein [Enterococcus faecalis CH188] gi|257158920|gb|EEU88880.1| cold-shock DNA-binding protein [Enterococcus faecalis ARO1/DG] gi|257159634|gb|EEU89594.1| cold-shock protein [Enterococcus faecalis T11] gi|257162400|gb|EEU92360.1| cold shock protein [Enterococcus faecalis X98] gi|291080457|gb|EFE17821.1| conserved domain protein [Enterococcus faecalis R712] gi|291082119|gb|EFE19082.1| conserved domain protein [Enterococcus faecalis S613] gi|294453303|gb|EFG21714.1| cold-shock DNA-binding domain protein [Enterococcus faecalis PC1.1] gi|295114296|emb|CBL32933.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76] gi|300849200|gb|EFK76950.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11] gi|306498127|gb|EFM67650.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|306501553|gb|EFM70849.1| major cold shock protein CspA [Enterococcus faecalis TX0109] gi|306504793|gb|EFM73991.1| major cold shock protein CspA [Enterococcus faecalis TX0860] gi|306508209|gb|EFM77325.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|306510657|gb|EFM79679.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|306514854|gb|EFM83402.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|310628210|gb|EFQ11493.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512] gi|310629869|gb|EFQ13152.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|310633680|gb|EFQ16963.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|311290636|gb|EFQ69192.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516] gi|311292491|gb|EFQ71047.1| major cold shock protein CspA [Enterococcus faecalis TX0470] gi|315028141|gb|EFT40073.1| major cold shock protein CspA [Enterococcus faecalis TX2137] gi|315030878|gb|EFT42810.1| major cold shock protein CspA [Enterococcus faecalis TX4000] gi|315032295|gb|EFT44227.1| major cold shock protein CspA [Enterococcus faecalis TX0017] gi|315036226|gb|EFT48158.1| major cold shock protein CspA [Enterococcus faecalis TX0027] gi|315145411|gb|EFT89427.1| major cold shock protein CspA [Enterococcus faecalis TX2141] gi|315148797|gb|EFT92813.1| major cold shock protein CspA [Enterococcus faecalis TX4244] gi|315151664|gb|EFT95680.1| major cold shock protein CspA [Enterococcus faecalis TX0012] gi|315154536|gb|EFT98552.1| major cold shock protein CspA [Enterococcus faecalis TX0031] gi|315156405|gb|EFU00422.1| major cold shock protein CspA [Enterococcus faecalis TX0043] gi|315160103|gb|EFU04120.1| major cold shock protein CspA [Enterococcus faecalis TX0312] gi|315163277|gb|EFU07294.1| major cold shock protein CspA [Enterococcus faecalis TX0645] gi|315165918|gb|EFU09935.1| major cold shock protein CspA [Enterococcus faecalis TX1302] gi|315169325|gb|EFU13342.1| major cold shock protein CspA [Enterococcus faecalis TX1341] gi|315171820|gb|EFU15837.1| major cold shock protein CspA [Enterococcus faecalis TX1342] gi|315174742|gb|EFU18759.1| major cold shock protein CspA [Enterococcus faecalis TX1346] gi|315576277|gb|EFU88468.1| major cold shock protein CspA [Enterococcus faecalis TX0309B] gi|315578917|gb|EFU91108.1| major cold shock protein CspA [Enterococcus faecalis TX0630] gi|315582769|gb|EFU94960.1| major cold shock protein CspA [Enterococcus faecalis TX0309A] gi|323478890|gb|ADX78329.1| cold shock protein cspC [Enterococcus faecalis 62] gi|327536078|gb|AEA94912.1| cold shock protein CspA [Enterococcus faecalis OG1RF] gi|329573421|gb|EGG55031.1| major cold shock protein CspA [Enterococcus faecalis TX1467] Length = 66 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KG+GFI S E G DVF+H SA+ G L EGQ VT+D +D Sbjct: 1 MEQGTVKWFNAEKGFGFI----SREDGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSD 55 >gi|15892944|ref|NP_360658.1| cold shock-like protein [Rickettsia conorii str. Malish 7] gi|34581356|ref|ZP_00142836.1| cold shock-like protein [Rickettsia sibirica 246] gi|157828875|ref|YP_001495117.1| cold shock-like protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933601|ref|YP_001650390.1| cold shock protein [Rickettsia rickettsii str. Iowa] gi|229587023|ref|YP_002845524.1| Cold shock-like protein [Rickettsia africae ESF-5] gi|238650987|ref|YP_002916843.1| cold shock protein [Rickettsia peacockii str. Rustic] gi|22256739|sp|Q92GV1|CSPA_RICCN RecName: Full=Cold shock-like protein CspA gi|15620137|gb|AAL03559.1| cold shock-like protein [Rickettsia conorii str. Malish 7] gi|28262741|gb|EAA26245.1| cold shock-like protein [Rickettsia sibirica 246] gi|157801356|gb|ABV76609.1| cold shock-like protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908688|gb|ABY72984.1| cold shock protein [Rickettsia rickettsii str. Iowa] gi|228022073|gb|ACP53781.1| Cold shock-like protein [Rickettsia africae ESF-5] gi|238625085|gb|ACR47791.1| cold shock protein [Rickettsia peacockii str. Rustic] Length = 70 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI + G DVF+H+SAV +AGL +L EGQ V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQD---NGGKDVFVHKSAVDAAGLHSLEEGQDVIFDL--EEKQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAVNLRI 69 >gi|70731986|ref|YP_261728.1| temperature acclimation protein b, fragment-like protein [Pseudomonas fluorescens Pf-5] gi|68346285|gb|AAY93891.1| temperature acclimation protein b [Pseudomonas fluorescens Pf-5] Length = 70 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQ 56 >gi|154244150|ref|YP_001415108.1| cold-shock DNA-binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154158235|gb|ABS65451.1| putative cold-shock DNA-binding domain protein [Xanthobacter autotrophicus Py2] Length = 241 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 26/48 (54%), Positives = 35/48 (72%), Gaps = 3/48 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G++KWYNPDKG+GFI EG G DVF+H + ++ +GL +L EGQ V Sbjct: 177 GTVKWYNPDKGFGFIAVEG---GGKDVFVHVTVISRSGLTDLAEGQRV 221 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 3/38 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42 ++KW+NP+KG+GF+ E + SG DVFLH A+ +AG Sbjct: 67 ATVKWFNPEKGFGFV--ELADGSG-DVFLHARALEAAG 101 >gi|116669342|ref|YP_830275.1| cold-shock DNA-binding protein family protein [Arthrobacter sp. FB24] gi|116609451|gb|ABK02175.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24] Length = 67 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFIT +G SGDDVF+H SA+ G L EGQ V ++ + + + Sbjct: 4 GTVKWFNAEKGYGFITVDG---SGDDVFVHWSAIEREGYRALDEGQRVQFEVGEGEKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENVR 65 >gi|297744636|emb|CBI37898.3| unnamed protein product [Vitis vinifera] Length = 236 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + GDD+F+H+S++ S G +L EG+ V + V++ +G+ Sbjct: 6 GTVKWFNDQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDGR 61 Query: 65 YSA 67 A Sbjct: 62 TKA 64 >gi|253995969|ref|YP_003048033.1| cold-shock DNA-binding domain-containing protein [Methylotenera mobilis JLW8] gi|253982648|gb|ACT47506.1| cold-shock DNA-binding domain protein [Methylotenera mobilis JLW8] Length = 67 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + GDD+F H SA+ +G +L EGQ V++D + Sbjct: 4 GTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVESGYKSLKEGQRVSFDLTE 54 >gi|257867783|ref|ZP_05647436.1| cold-shock protein [Enterococcus casseliflavus EC30] gi|257874110|ref|ZP_05653763.1| cold-shock protein [Enterococcus casseliflavus EC10] gi|257876671|ref|ZP_05656324.1| cold-shock protein [Enterococcus casseliflavus EC20] gi|325571022|ref|ZP_08146594.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] gi|257801866|gb|EEV30769.1| cold-shock protein [Enterococcus casseliflavus EC30] gi|257808274|gb|EEV37096.1| cold-shock protein [Enterococcus casseliflavus EC10] gi|257810837|gb|EEV39657.1| cold-shock protein [Enterococcus casseliflavus EC20] gi|325156107|gb|EGC68293.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] Length = 66 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFIT +G GDDVF+H SA+ G +L EGQ V + V+ A Sbjct: 1 MEHGKVKWFNNEKGFGFITVDG----GDDVFVHFSAIQGDGFKSLEEGQEVEFTIVEG-A 55 Query: 62 NGKYSAENLKL 72 G +AE K+ Sbjct: 56 RGPQAAEVTKV 66 >gi|228993896|ref|ZP_04153799.1| hypothetical protein bpmyx0001_46190 [Bacillus pseudomycoides DSM 12442] gi|228999933|ref|ZP_04159505.1| hypothetical protein bmyco0003_44860 [Bacillus mycoides Rock3-17] gi|229007485|ref|ZP_04165082.1| hypothetical protein bmyco0002_43640 [Bacillus mycoides Rock1-4] gi|229087667|ref|ZP_04219793.1| hypothetical protein bcere0022_42280 [Bacillus cereus Rock3-44] gi|229164128|ref|ZP_04292064.1| hypothetical protein bcere0009_48900 [Bacillus cereus R309803] gi|228619364|gb|EEK76254.1| hypothetical protein bcere0009_48900 [Bacillus cereus R309803] gi|228695628|gb|EEL48487.1| hypothetical protein bcere0022_42280 [Bacillus cereus Rock3-44] gi|228753873|gb|EEM03314.1| hypothetical protein bmyco0002_43640 [Bacillus mycoides Rock1-4] gi|228759875|gb|EEM08849.1| hypothetical protein bmyco0003_44860 [Bacillus mycoides Rock3-17] gi|228765847|gb|EEM14498.1| hypothetical protein bpmyx0001_46190 [Bacillus pseudomycoides DSM 12442] Length = 65 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + A G Sbjct: 2 QGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQKVEFDIV-DGARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|168334103|ref|ZP_02692316.1| cold shock protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 65 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+NP+KG+GFI E GDDVF+H +A+ S G L EGQ V ++ + Sbjct: 3 GKVKWFNPEKGFGFI----EREDGDDVFVHFTAIQSEGFKTLEEGQEVEFEITE 52 >gi|56964834|ref|YP_176565.1| cold shock protein CspC [Bacillus clausii KSM-K16] gi|56911077|dbj|BAD65604.1| cold shock protein CspC [Bacillus clausii KSM-K16] Length = 65 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ S G L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFNAEKGFGFI----EREDGDDVFVHFSAINSDGFKTLDEGQDVEFEIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|326489997|dbj|BAJ94072.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 85 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ ++ DVF+H SA++ AG L EGQ V + Y+Q+ G Sbjct: 8 GVVKWFNESKGFGFITPDDGSK---DVFVHFSAISGAGFKTLAEGQRVEF-YIQDGQKGP 63 Query: 65 YSAENLKL 72 + + + L Sbjct: 64 SAVDVMAL 71 >gi|315639698|ref|ZP_07894837.1| cold shock protein CspA [Enterococcus italicus DSM 15952] gi|315484475|gb|EFU74932.1| cold shock protein CspA [Enterococcus italicus DSM 15952] Length = 66 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N +KG+GFIT E G+DVF+H SA+ G L EGQ VT+D Sbjct: 1 MNNGTVKWFNSEKGFGFITAE----DGNDVFVHFSAIQGDGFKTLEEGQAVTFD 50 >gi|303239877|ref|ZP_07326400.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus CD2] gi|302592587|gb|EFL62312.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus CD2] Length = 65 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N +KG+GFI EG GDDVF+H SA+ S G +L EGQ V +D Sbjct: 3 GKVKWFNAEKGFGFIEREG----GDDVFVHFSAIQSQGYKSLDEGQRVEFD 49 >gi|50120233|ref|YP_049400.1| cold shock protein CspE [Pectobacterium atrosepticum SCRI1043] gi|227114408|ref|ZP_03828064.1| cold shock protein CspE [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227329730|ref|ZP_03833754.1| cold shock protein CspE [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253687566|ref|YP_003016756.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261822402|ref|YP_003260508.1| cold shock protein CspE [Pectobacterium wasabiae WPP163] gi|49610759|emb|CAG74204.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043] gi|251754144|gb|ACT12220.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261606415|gb|ACX88901.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] Length = 69 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE ++ DVF+H SA+ S G L EGQ V ++ + + A G Sbjct: 5 KGSVKWFNESKGFGFITPEDGSK---DVFVHFSAIQSNGFKTLAEGQRVEFE-ITDGAKG 60 Query: 64 KYSA 67 +A Sbjct: 61 PSAA 64 >gi|294497748|ref|YP_003561448.1| cold shock protein [Bacillus megaterium QM B1551] gi|295703123|ref|YP_003596198.1| cold shock protein [Bacillus megaterium DSM 319] gi|294347685|gb|ADE68014.1| cold shock protein [Bacillus megaterium QM B1551] gi|294800782|gb|ADF37848.1| cold shock protein [Bacillus megaterium DSM 319] Length = 65 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 5/64 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG DDVF+H SA+ G +L EGQ VT++ +++ A G Sbjct: 3 QGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKSLEEGQEVTFE-IEDGARG 57 Query: 64 KYSA 67 +A Sbjct: 58 PQAA 61 >gi|262278327|ref|ZP_06056112.1| cold shock protein [Acinetobacter calcoaceticus RUH2202] gi|299769266|ref|YP_003731292.1| cold shock protein [Acinetobacter sp. DR1] gi|262258678|gb|EEY77411.1| cold shock protein [Acinetobacter calcoaceticus RUH2202] gi|298699354|gb|ADI89919.1| cold shock protein [Acinetobacter sp. DR1] Length = 71 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KG+GFI P ESG DVF H S +A++G L EGQ V + Q Sbjct: 6 IMKGTVKWFNEAKGFGFIQP----ESGPDVFAHFSEIANSGFRTLAEGQRVEFSVAQ 58 >gi|239627019|ref|ZP_04670050.1| cold-shock DNA-binding domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239517165|gb|EEQ57031.1| cold-shock DNA-binding domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 67 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 41/54 (75%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +++G++KW+N KG+GFIT + E+G+D+F+H S +A+ G +L +GQ VT+D Sbjct: 1 MNKGTVKWFNSQKGFGFIT---NAENGEDIFVHFSGIATDGFKSLDDGQSVTFD 51 >gi|226495947|ref|NP_001141714.1| hypothetical protein LOC100273843 [Zea mays] gi|194705650|gb|ACF86909.1| unknown [Zea mays] Length = 303 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG++KW+N KG+GFI+PE +E D+F+H+S++ S G +L EG+ V + + D Sbjct: 61 QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD 115 >gi|229542762|ref|ZP_04431822.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] gi|229327182|gb|EEN92857.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] Length = 66 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N +KG+GFI G GDDVF+H SA+ G L EGQ VT+D Q Sbjct: 1 MEQGTVKWFNGEKGFGFIERNG----GDDVFVHFSAIQGEGFKTLDEGQKVTFDVEQ 53 >gi|326789294|ref|YP_004307115.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] gi|326540058|gb|ADZ81917.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] Length = 65 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI+ EG GDDVF+H SA+ G +L EGQ V +D + Sbjct: 3 GTVKWFNAEKGFGFISREG----GDDVFVHFSAIQGDGFKSLEEGQAVNFDITK 52 >gi|262371507|ref|ZP_06064821.1| cold shock protein [Acinetobacter johnsonii SH046] gi|294648334|ref|ZP_06725843.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194] gi|262313558|gb|EEY94611.1| cold shock protein [Acinetobacter johnsonii SH046] gi|292825776|gb|EFF84470.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194] Length = 71 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 V +G++KW+N KG+GFI ESG DVF H S +AS+G L EGQ+V + Q Sbjct: 6 VVKGTVKWFNETKGFGFI----QQESGPDVFAHFSEIASSGFKTLMEGQMVEFSVAQ 58 >gi|253998300|ref|YP_003050363.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. SIP3-4] gi|255599837|ref|XP_002537322.1| cold shock domain containing proteins, putative [Ricinus communis] gi|313200374|ref|YP_004039032.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. MP688] gi|223516741|gb|EEF25061.1| cold shock domain containing proteins, putative [Ricinus communis] gi|253984979|gb|ACT49836.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4] gi|312439690|gb|ADQ83796.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688] Length = 67 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + GDD+F H SA+ +G +L EGQ V++D + Sbjct: 4 GTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVESGYKSLKEGQRVSFDVTE 54 >gi|116510999|ref|YP_808215.1| cold-shock DNA-binding protein family protein [Lactococcus lactis subsp. cremoris SK11] gi|125623057|ref|YP_001031540.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris MG1363] gi|3892590|emb|CAA76698.1| cold shock protein E [Lactococcus lactis subsp. cremoris MG1363] gi|116106653|gb|ABJ71793.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp. cremoris SK11] gi|124491865|emb|CAL96786.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris MG1363] gi|300069804|gb|ADJ59204.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris NZ9000] Length = 65 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N KG+GFIT TE G+DVF H SA+ + G L EGQ VT+D Sbjct: 3 QGTVKWFNATKGFGFIT----TEEGNDVFAHFSAIQTDGFKTLDEGQKVTFD 50 >gi|163785452|ref|ZP_02180056.1| cold-shock DNA-binding domain protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879278|gb|EDP73178.1| cold-shock DNA-binding domain protein [Hydrogenivirga sp. 128-5-R1-1] Length = 69 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 3/60 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW++ KG+GFIT E ++G+D+F+H SA+ G NL EG+ V ++ VQ++ Sbjct: 1 MSTTGTVKWFDSKKGFGFITRE---DTGEDIFVHFSAINGQGFKNLEEGEKVEFEVVQDE 57 >gi|289678192|ref|ZP_06499082.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae FF5] gi|330899515|gb|EGH30934.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. japonica str. M301072PT] gi|330938935|gb|EGH42434.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi str. 1704B] gi|330982632|gb|EGH80735.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 70 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQ 56 >gi|90420715|ref|ZP_01228621.1| cold-shock protein [Aurantimonas manganoxydans SI85-9A1] gi|90335006|gb|EAS48767.1| cold-shock protein [Aurantimonas manganoxydans SI85-9A1] Length = 70 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI+P+ G DVF+H S+V +G+ +LTE Q V++D + D Sbjct: 1 MAQTGTVKFFNMDKGFGFISPDAG---GSDVFVHISSVERSGMTSLTENQKVSFD-TEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 PRGK 60 >gi|312962742|ref|ZP_07777231.1| temperature acclimation protein b [Pseudomonas fluorescens WH6] gi|330811374|ref|YP_004355836.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|311283117|gb|EFQ61709.1| temperature acclimation protein b [Pseudomonas fluorescens WH6] gi|327379482|gb|AEA70832.1| Putative transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 70 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56 >gi|220931393|ref|YP_002508301.1| putative cold-shock DNA-binding domain protein [Halothermothrix orenii H 168] gi|219992703|gb|ACL69306.1| putative cold-shock DNA-binding domain protein [Halothermothrix orenii H 168] Length = 68 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +++ G +KW++ KG+GFI E+GDDVF+H SA+ G +L EGQ V ++ VQ D Sbjct: 2 IIYNGKVKWFSDKKGFGFI----EREAGDDVFVHFSAIQKEGFKSLDEGQEVEFEVVQGD 57 >gi|222086573|ref|YP_002545107.1| cold shock protein [Agrobacterium radiobacter K84] gi|221724021|gb|ACM27177.1| cold shock protein [Agrobacterium radiobacter K84] Length = 71 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI P+ + G D+F+H SAV ++GL L+E Q V++D + D Sbjct: 1 MAETGTVKFFNTDKGFGFIKPD---KGGADIFVHISAVQASGLAGLSENQKVSFD-TEPD 56 Query: 61 ANGK-YSAENLKL 72 GK A NL++ Sbjct: 57 RRGKGPKAVNLQI 69 >gi|16974809|pdb|1I5F|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability gi|16974810|pdb|1I5F|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability Length = 66 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI EG G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQEGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|2493773|sp|P72192|TAPB_PSEFR RecName: Full=Temperature acclimation protein B; AltName: Full=E8.0 gi|1513086|gb|AAC46000.1| temperature acclimation protein B [Pseudomonas fragi] Length = 63 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQ 56 >gi|163941513|ref|YP_001646397.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|163863710|gb|ABY44769.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] Length = 66 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N DKG+GFI EG G+DVF+H SA+ G +L EGQ VT++ Q Sbjct: 1 MEQGKVKWFNADKGFGFIEREG----GEDVFVHFSAIQIDGFKSLDEGQSVTFEVEQ 53 >gi|307332024|ref|ZP_07611115.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306882305|gb|EFN13400.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 69 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 4/70 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +E G DVF+H SA+ S G L EG+ VT++ VQ G Sbjct: 4 GTVKWFNAEKGFGFIA---QSEGGPDVFVHYSAINSRGFRELNEGERVTFE-VQQGQKGP 59 Query: 65 YSAENLKLVP 74 +A + +P Sbjct: 60 QAANVERALP 69 >gi|325920664|ref|ZP_08182574.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC 19865] gi|325548854|gb|EGD19798.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC 19865] Length = 68 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N KG+GFI+PE + DVF H SA+ S G +L EGQ V+YD Q Sbjct: 1 MQNGTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVSYDVTQ 54 >gi|186475334|ref|YP_001856804.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184191793|gb|ACC69758.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 68 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ VQ Sbjct: 4 GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVSFEVVQ 54 >gi|149182243|ref|ZP_01860723.1| cold-shock domain family protein [Bacillus sp. SG-1] gi|148850012|gb|EDL64182.1| cold-shock domain family protein [Bacillus sp. SG-1] Length = 66 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G +KW+N +KG+GFI EG GDDVF+H SA+ G +L EGQ VT+D Sbjct: 1 MEHGKVKWFNSEKGFGFIEREG----GDDVFVHFSAIQGEGYKSLDEGQEVTFD 50 >gi|66044345|ref|YP_234186.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|302188384|ref|ZP_07265057.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae 642] gi|63255052|gb|AAY36148.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|330950944|gb|EGH51204.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7] gi|330969232|gb|EGH69298.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris str. M302273PT] Length = 70 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56 >gi|77460616|ref|YP_350123.1| cold-shock DNA-binding protein [Pseudomonas fluorescens Pf0-1] gi|77384619|gb|ABA76132.1| major cold shock protein [Pseudomonas fluorescens Pf0-1] Length = 70 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56 >gi|15604514|ref|NP_221032.1| cold shock-like protein (cspA) [Rickettsia prowazekii str. Madrid E] gi|6225211|sp|Q9ZCP9|CSPA_RICPR RecName: Full=Cold shock-like protein CspA gi|3861208|emb|CAA15108.1| COLD SHOCK-LIKE PROTEIN (cspA) [Rickettsia prowazekii] gi|292572298|gb|ADE30213.1| Cold shock-like protein [Rickettsia prowazekii Rp22] Length = 70 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI + G DVF+H+SA+ +AGL +L EGQ V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQDNG---GKDVFVHKSAIDAAGLHSLEEGQEVIFDI--EEKQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAVNLRV 69 >gi|119358122|ref|YP_912766.1| cold-shock DNA-binding protein family protein [Chlorobium phaeobacteroides DSM 266] gi|119355471|gb|ABL66342.1| cold-shock DNA-binding protein family [Chlorobium phaeobacteroides DSM 266] Length = 70 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KGYGFI + + G DVF+H SA+ +G +LTEGQ V + VQ A G Sbjct: 6 EGTVKWFNEEKGYGFI----AQKEGKDVFVHHSAIKGSGRKSLTEGQKVLMEVVQG-AKG 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -LQAENV 66 >gi|221195898|ref|ZP_03568948.1| conserved domain protein [Atopobium rimae ATCC 49626] gi|221184232|gb|EEE16629.1| conserved domain protein [Atopobium rimae ATCC 49626] Length = 67 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+NP+KGYGFI S E GDD+F+H S + G L EGQ V ++ + NG Sbjct: 3 QGTVKWFNPEKGYGFI----SREDGDDLFVHYSEIEMDGYKTLDEGQPVEFE-ITTGQNG 57 Query: 64 KYSAENLKLV 73 K A ++ + Sbjct: 58 KLQASSVHKI 67 >gi|15672150|ref|NP_266324.1| cold shock protein E [Lactococcus lactis subsp. lactis Il1403] gi|281490655|ref|YP_003352635.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|12723019|gb|AAK04266.1|AE006254_7 cold shock protein E [Lactococcus lactis subsp. lactis Il1403] gi|281374424|gb|ADA63945.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|326405743|gb|ADZ62814.1| cold shock protein [Lactococcus lactis subsp. lactis CV56] Length = 65 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N KG+GFIT TE G+DVF H SA+ + G L EGQ VT+D Sbjct: 3 QGTVKWFNATKGFGFIT----TEEGNDVFAHFSAIQTDGFKTLDEGQKVTFD 50 >gi|330873092|gb|EGH07241.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 70 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 6/60 (10%) Query: 1 MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M R G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 1 MAERQSGTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQ 56 >gi|330948982|gb|EGH49242.1| cold shock protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 54 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V++ Sbjct: 9 GTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSF 54 >gi|229592287|ref|YP_002874406.1| major cold shock protein [Pseudomonas fluorescens SBW25] gi|229364153|emb|CAY51796.1| major cold shock protein [Pseudomonas fluorescens SBW25] Length = 70 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56 >gi|78188197|ref|YP_378535.1| cold-shock DNA-binding domain-containing protein [Chlorobium chlorochromatii CaD3] gi|78170396|gb|ABB27492.1| cold-shock DNA-binding protein family [Chlorobium chlorochromatii CaD3] Length = 69 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N +KGYGFI +G G DVF+H SA+ +G L EGQ VT + VQ + Sbjct: 5 EGTVKWFNEEKGYGFIEQQG----GKDVFVHYSAINGSGRKTLVEGQKVTMEVVQGE 57 >gi|313890412|ref|ZP_07824043.1| cold shock protein CspA [Streptococcus pseudoporcinus SPIN 20026] gi|332523883|ref|ZP_08400135.1| cold shock protein CspA [Streptococcus porcinus str. Jelinkova 176] gi|313121255|gb|EFR44363.1| cold shock protein CspA [Streptococcus pseudoporcinus SPIN 20026] gi|332315147|gb|EGJ28132.1| cold shock protein CspA [Streptococcus porcinus str. Jelinkova 176] Length = 67 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI STE G DVF H SA+ S G L EGQ V +D Sbjct: 3 QGTVKWFNAEKGFGFI----STEEGQDVFAHFSAIQSDGFKTLDEGQKVEFD 50 >gi|304438239|ref|ZP_07398181.1| cold shock protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368846|gb|EFM22529.1| cold shock protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 72 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ DKGYGFI S E GDDVF+H S++ G L+EGQ V +D V+ Sbjct: 9 GKVKWFSADKGYGFI----SREDGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVE 58 >gi|319938152|ref|ZP_08012550.1| cold shock DNA-binding protein [Coprobacillus sp. 29_1] gi|319806673|gb|EFW03322.1| cold shock DNA-binding protein [Coprobacillus sp. 29_1] Length = 68 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+ DKG+GFIT EG + DVF+H SA+ + G L EGQ V +D V+ D Sbjct: 4 GKVKWFKSDKGFGFITLEGENK---DVFVHFSAINTDGFKTLEEGQTVEFDIVEGD 56 >gi|237799875|ref|ZP_04588336.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022730|gb|EGI02787.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. oryzae str. 1_6] Length = 70 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 6/60 (10%) Query: 1 MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M R G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 1 MAERQSGTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56 >gi|16974807|pdb|1HZC|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability gi|16974808|pdb|1HZC|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability Length = 66 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KGYGFI EG G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQEGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQAVSFEIVQGN 55 >gi|115522947|ref|YP_779858.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115516894|gb|ABJ04878.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisA53] Length = 70 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +L EGQ ++++ V+ D Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLIEGQRISFE-VEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KKGK 60 >gi|284009245|emb|CBA76349.1| cold shock protein [Arsenophonus nasoniae] Length = 70 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N KG+GFITPE ++ DVF+H +A+ S G L EGQ V +D + + Sbjct: 6 KGNVKWFNEAKGFGFITPEDGSK---DVFVHFTAIKSEGFKTLAEGQKVEFDITEGE 59 >gi|297197159|ref|ZP_06914556.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|197716555|gb|EDY60589.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] Length = 67 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ V +D Q Sbjct: 3 KGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIAAQGFRELQEGQKVEFDVTQGQKGP 59 Query: 64 KYSAENLK 71 + AEN++ Sbjct: 60 Q--AENIR 65 >gi|251798553|ref|YP_003013284.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] gi|247546179|gb|ACT03198.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] Length = 66 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI E+GDDVF+H SA+ S G +L EGQ V ++ V+ Sbjct: 4 GTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQSEGFKSLDEGQRVEFNVVK 53 >gi|227499116|ref|ZP_03929251.1| cold-shock DNA-binding protein [Acidaminococcus sp. D21] gi|284047580|ref|YP_003397919.1| cold-shock DNA-binding domain protein [Acidaminococcus fermentans DSM 20731] gi|226904563|gb|EEH90481.1| cold-shock DNA-binding protein [Acidaminococcus sp. D21] gi|283951801|gb|ADB46604.1| cold-shock DNA-binding domain protein [Acidaminococcus fermentans DSM 20731] Length = 65 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V +D V+ + G+ Sbjct: 3 GKVKWFNAEKGYGFI----EREDGGDVFVHFSAIQGEGFKTLEEGQAVEFDVVEGN-RGE 57 Query: 65 YSAENLKL 72 +A +KL Sbjct: 58 QAANVVKL 65 >gi|90422418|ref|YP_530788.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90104432|gb|ABD86469.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB18] Length = 70 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +L EGQ ++++ V+ D Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLIEGQRISFE-VEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KKGK 60 >gi|254386942|ref|ZP_05002225.1| cold-shock domain containing protein [Streptomyces sp. Mg1] gi|194345770|gb|EDX26736.1| cold-shock domain containing protein [Streptomyces sp. Mg1] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ VT+D Q Sbjct: 4 GTVKWFNAEKGFGFIEQEGG---GPDVFAHYSNIAAQGFRELLEGQKVTFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|119961765|ref|YP_946790.1| cold shock protein [Arthrobacter aurescens TC1] gi|119948624|gb|ABM07535.1| putative cold shock protein [Arthrobacter aurescens TC1] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/51 (52%), Positives = 36/51 (70%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N +KGYGFIT + ESGDDVF+H SA+ G L EGQ V ++ Sbjct: 4 GTVKWFNAEKGYGFITVD---ESGDDVFVHWSAIQMDGFRALEEGQRVEFE 51 >gi|86360861|ref|YP_472748.1| putative cold shock protein [Rhizobium etli CFN 42] gi|86284963|gb|ABC94021.1| putative cold shock protein [Rhizobium etli CFN 42] Length = 69 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + DVF+H SAV AG+ ++ EGQ + + + +GK Sbjct: 4 GTVKWFNSTKGFGFIQPD---DGSADVFVHISAVERAGMSSIAEGQKLGFQLEHDRKSGK 60 Query: 65 YSAENLK 71 SA L+ Sbjct: 61 MSAGQLQ 67 >gi|312880250|ref|ZP_07740050.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM 12260] gi|310783541|gb|EFQ23939.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM 12260] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M G++KW+N KGYGFIT TE G DVF+H SA+ G L EGQ V+++ Q Sbjct: 1 MKTNGTVKWFNATKGYGFIT----TEDGKDVFVHFSAIQGDGFKTLDEGQRVSFEVTQ 54 >gi|28868485|ref|NP_791104.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28851723|gb|AAO54799.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331015230|gb|EGH95286.1| cold shock domain family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 70 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQ 56 >gi|71735994|ref|YP_273427.1| cold shock domain-contain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487383|ref|ZP_05641424.1| cold shock domain-contain protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289623813|ref|ZP_06456767.1| cold shock domain-contain protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649164|ref|ZP_06480507.1| cold shock domain-contain protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298485821|ref|ZP_07003899.1| Cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71556547|gb|AAZ35758.1| cold shock domain family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159645|gb|EFI00688.1| Cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322886|gb|EFW78977.1| cold shock domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329805|gb|EFW85793.1| cold shock domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330867848|gb|EGH02557.1| cold shock domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330989711|gb|EGH87814.1| cold shock domain-contain protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 70 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56 >gi|293375456|ref|ZP_06621737.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis PC909] gi|325836869|ref|ZP_08166275.1| cold shock-like protein CspG [Turicibacter sp. HGF1] gi|292646009|gb|EFF64038.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis PC909] gi|325491115|gb|EGC93406.1| cold shock-like protein CspG [Turicibacter sp. HGF1] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFIT E+G DVF+H SA+ + G L EGQ VT++ Sbjct: 2 KGTVKWFNEEKGFGFITA----ENGSDVFVHFSAIKADGFKRLEEGQKVTFE 49 >gi|262200536|ref|YP_003271744.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] gi|262083883|gb|ACY19851.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] Length = 79 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI P+ + G DVF+H SA+ +G NL E Q V +D V+ A G Sbjct: 15 QGTVKWFNGEKGFGFIAPD---DQGADVFVHFSAIQGSGFRNLEEAQRVEFD-VEQGAKG 70 Query: 64 KYSAENLKLV 73 A N+ ++ Sbjct: 71 -LQATNVSVI 79 >gi|297563005|ref|YP_003681979.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847453|gb|ADH69473.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI EG DVF+H SA++ G NL E Q VT+D +Q Sbjct: 3 QGTVKWFNSEKGFGFIAVEGGQP---DVFVHYSAISGTGFRNLEEDQKVTFDIIQ 54 >gi|330962175|gb|EGH62435.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. maculicola str. ES4326] Length = 70 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 6/60 (10%) Query: 1 MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M R G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 1 MAERQSGTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVSVQ 56 >gi|15675836|ref|NP_270010.1| putative cold shock protein [Streptococcus pyogenes M1 GAS] gi|19746951|ref|NP_608087.1| cold shock protein [Streptococcus pyogenes MGAS8232] gi|21911305|ref|NP_665573.1| putative cold-shock protein [Streptococcus pyogenes MGAS315] gi|61221535|sp|P0A360|CSPA_STRP3 RecName: Full=Major cold shock protein gi|61221536|sp|P0A361|CSPA_STRP8 RecName: Full=Major cold shock protein gi|81175243|sp|P0C0F1|CSPA_STRP1 RecName: Full=Major cold shock protein gi|13623066|gb|AAK34731.1| putative cold shock protein [Streptococcus pyogenes M1 GAS] gi|19749202|gb|AAL98586.1| putative cold shock protein [Streptococcus pyogenes MGAS8232] gi|21905519|gb|AAM80376.1| putative cold-shock protein [Streptococcus pyogenes MGAS315] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI STE+G DVF H SA+ + G L EGQ V +D Sbjct: 3 QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVAFD 50 >gi|69244300|ref|ZP_00602768.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] gi|227551568|ref|ZP_03981617.1| cold-shock protein [Enterococcus faecium TX1330] gi|257878362|ref|ZP_05658015.1| cold-shock protein [Enterococcus faecium 1,230,933] gi|257887333|ref|ZP_05666986.1| cold-shock protein [Enterococcus faecium 1,141,733] gi|257889438|ref|ZP_05669091.1| cold-shock protein [Enterococcus faecium 1,231,410] gi|257892619|ref|ZP_05672272.1| cold-shock protein [Enterococcus faecium 1,231,408] gi|257895824|ref|ZP_05675477.1| cold-shock protein [Enterococcus faecium Com12] gi|257898451|ref|ZP_05678104.1| cold-shock protein [Enterococcus faecium Com15] gi|258616116|ref|ZP_05713886.1| cold shock protein CspA family protein [Enterococcus faecium DO] gi|260559947|ref|ZP_05832126.1| cold-shock protein [Enterococcus faecium C68] gi|293377552|ref|ZP_06623744.1| cold-shock DNA-binding domain protein [Enterococcus faecium PC4.1] gi|293553922|ref|ZP_06674527.1| cold-shock protein [Enterococcus faecium E1039] gi|293560530|ref|ZP_06677020.1| cold-shock protein [Enterococcus faecium E1162] gi|293568855|ref|ZP_06680168.1| cold-shock protein [Enterococcus faecium E1071] gi|293572948|ref|ZP_06683895.1| cold-shock protein [Enterococcus faecium E980] gi|294615473|ref|ZP_06695341.1| cold-shock protein [Enterococcus faecium E1636] gi|294618750|ref|ZP_06698279.1| cold shock protein [Enterococcus faecium E1679] gi|294621893|ref|ZP_06701048.1| cold shock protein [Enterococcus faecium U0317] gi|314940515|ref|ZP_07847657.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|314943280|ref|ZP_07850062.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|314948444|ref|ZP_07851829.1| major cold shock protein CspA [Enterococcus faecium TX0082] gi|314952991|ref|ZP_07855953.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|314994198|ref|ZP_07859503.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|314997118|ref|ZP_07862106.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|68196486|gb|EAN10913.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] gi|227179245|gb|EEI60217.1| cold-shock protein [Enterococcus faecium TX1330] gi|257812590|gb|EEV41348.1| cold-shock protein [Enterococcus faecium 1,230,933] gi|257823387|gb|EEV50319.1| cold-shock protein [Enterococcus faecium 1,141,733] gi|257825798|gb|EEV52424.1| cold-shock protein [Enterococcus faecium 1,231,410] gi|257828998|gb|EEV55605.1| cold-shock protein [Enterococcus faecium 1,231,408] gi|257832389|gb|EEV58810.1| cold-shock protein [Enterococcus faecium Com12] gi|257836363|gb|EEV61437.1| cold-shock protein [Enterococcus faecium Com15] gi|260074171|gb|EEW62494.1| cold-shock protein [Enterococcus faecium C68] gi|291588288|gb|EFF20123.1| cold-shock protein [Enterococcus faecium E1071] gi|291591676|gb|EFF23317.1| cold-shock protein [Enterococcus faecium E1636] gi|291595003|gb|EFF26351.1| cold shock protein [Enterococcus faecium E1679] gi|291598552|gb|EFF29614.1| cold shock protein [Enterococcus faecium U0317] gi|291601910|gb|EFF32157.1| cold-shock protein [Enterococcus faecium E1039] gi|291605497|gb|EFF34941.1| cold-shock protein [Enterococcus faecium E1162] gi|291606989|gb|EFF36364.1| cold-shock protein [Enterococcus faecium E980] gi|292643809|gb|EFF61927.1| cold-shock DNA-binding domain protein [Enterococcus faecium PC4.1] gi|313588788|gb|EFR67633.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|313591379|gb|EFR70224.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|313594927|gb|EFR73772.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|313598008|gb|EFR76853.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|313640286|gb|EFS04867.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|313645102|gb|EFS09682.1| major cold shock protein CspA [Enterococcus faecium TX0082] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ V+YD Sbjct: 1 MNNGTVKWFNADKGFGFITG----EDGNDVFAHFSAIQGDGFKTLEEGQAVSYD 50 >gi|289434645|ref|YP_003464517.1| cold-shock domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170889|emb|CBH27431.1| cold-shock domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +KG+GFI E+GDDVF+H SA+ G +L EGQ V++D Sbjct: 1 MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQGDGFKSLDEGQAVSFD 50 >gi|283784399|ref|YP_003364264.1| cold shock-like protein [Citrobacter rodentium ICC168] gi|62126861|gb|AAX64564.1| RNA chaperone, negative regulator of cspA transcription [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|282947853|emb|CBG87413.1| cold shock-like protein [Citrobacter rodentium ICC168] Length = 79 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ + N A G Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 70 Query: 64 KYSA 67 +A Sbjct: 71 PSAA 74 >gi|332140725|ref|YP_004426463.1| putative Cold shock-like protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550747|gb|AEA97465.1| putative Cold shock-like protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 70 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GF+TPE G DVF+H ++AS G L EGQ V+++ Q Sbjct: 7 GTVKWFNEEKGFGFLTPEA---GGKDVFVHFRSIASDGFKTLAEGQEVSFEVEQ 57 >gi|313902955|ref|ZP_07836350.1| cold-shock DNA-binding protein family [Thermaerobacter subterraneus DSM 13965] gi|313466679|gb|EFR62198.1| cold-shock DNA-binding protein family [Thermaerobacter subterraneus DSM 13965] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFIT + + DVF+H SA+ AG L EGQ VT+D V+ + K Sbjct: 3 GTVKWFNAEKGYGFITRD---DGQGDVFVHFSAIVGAGYRTLEEGQKVTFDVVEGEKGPK 59 Query: 65 YSAENL 70 A+N+ Sbjct: 60 --AQNV 63 >gi|302535426|ref|ZP_07287768.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302444321|gb|EFL16137.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +G GDDVF H S +A+ G L EGQ VT+D Q Sbjct: 4 GTVKWFNAAKGFGFIEQDGG---GDDVFAHFSNIATQGFRELLEGQKVTFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|304406586|ref|ZP_07388242.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] gi|304344644|gb|EFM10482.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG G DVF+H SA+ G L EGQ V ++ VQ Sbjct: 1 MQQGTVKWFNAEKGFGFIEVEG----GSDVFVHFSAIQGEGFKTLDEGQRVEFNVVQ--G 54 Query: 62 NGKYSAENL 70 N AEN+ Sbjct: 55 NRGPQAENV 63 >gi|223946111|gb|ACN27139.1| unknown [Zea mays] Length = 187 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG++KW+N KG+GFI+PE +E D+F+H+S++ S G +L EG+ V + + D Sbjct: 7 QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD 61 >gi|224824762|ref|ZP_03697869.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] gi|224603255|gb|EEG09431.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ E G+D+F H SA+ + G +L EGQ V++D V N GK Sbjct: 4 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINTQGFKSLKEGQRVSFDVV-NGPKGK 59 Query: 65 YSA 67 ++ Sbjct: 60 QAS 62 >gi|170761832|ref|YP_001785618.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree] gi|169408821|gb|ACA57232.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree] Length = 65 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFIT E G+DVF H S + S G +L EGQ V+YD V+ + Sbjct: 3 GTVKWFNGDKGFGFIT----GEDGNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKGPQ 58 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 59 --AENITII 65 >gi|56477397|ref|YP_158986.1| cold shock transcriptional regulator [Aromatoleum aromaticum EbN1] gi|56313440|emb|CAI08085.1| probably cold shock transcription regulator protein [Aromatoleum aromaticum EbN1] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 36/51 (70%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ G+D+F H SA+ +G +LTEGQ V YD Sbjct: 4 GTVKWFNDSKGFGFITPD---NGGEDLFAHFSAIQGSGFKSLTEGQKVQYD 51 >gi|89098567|ref|ZP_01171450.1| cold shock protein [Bacillus sp. NRRL B-14911] gi|89086812|gb|EAR65930.1| cold shock protein [Bacillus sp. NRRL B-14911] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E G+DVF+H SA+ S G +L EGQ V+++ V+ A G Sbjct: 4 GKVKWFNAEKGFGFI----EAEDGNDVFVHYSAIQSEGFKSLEEGQEVSFEVVEG-ARGP 58 Query: 65 YSAENLKL 72 +A KL Sbjct: 59 QAANVTKL 66 >gi|297565415|ref|YP_003684387.1| cold-shock DNA-binding domain-containing protein [Meiothermus silvanus DSM 9946] gi|296849864|gb|ADH62879.1| cold-shock DNA-binding domain protein [Meiothermus silvanus DSM 9946] Length = 74 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 5/61 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG T DVF+H SA+ S G L EG +V +D V+ NG Sbjct: 3 KGKVKWFNAEKGFGFIEREGDT----DVFVHYSAIQSKGFRTLNEGDVVEFD-VEPGKNG 57 Query: 64 K 64 K Sbjct: 58 K 58 >gi|188996314|ref|YP_001930565.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931381|gb|ACD66011.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 68 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 3/60 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW++ KG+GFIT + ++G D+F+H SA+ +G NL EGQ V ++ VQ++ Sbjct: 1 MAVTGTVKWFDSKKGFGFITRD---DNGQDIFVHFSAIQGSGFKNLEEGQKVRFEIVQDE 57 >gi|148266030|ref|YP_001232736.1| cold-shock DNA-binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146399530|gb|ABQ28163.1| cold-shock DNA-binding protein family [Geobacter uraniireducens Rf4] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KG+GFI + E+G+DVF+H SA+ G L EG VT+D V+ Sbjct: 1 MEKGTVKWFNESKGFGFI----ARENGEDVFVHFSAITGEGFKTLAEGDTVTFDVVK 53 >gi|86139271|ref|ZP_01057841.1| cold shock family protein [Roseobacter sp. MED193] gi|85824115|gb|EAQ44320.1| cold shock family protein [Roseobacter sp. MED193] Length = 68 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G DVF+H SAV +GL L + Q V+Y+ +Q +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPD---NGGSDVFVHISAVERSGLTGLADNQKVSYE-MQPGRDGR 59 Query: 65 YSAENLKLV 73 SA +L L+ Sbjct: 60 ESAVDLALL 68 >gi|114571412|ref|YP_758092.1| cold-shock DNA-binding protein family protein [Maricaulis maris MCS10] gi|114341874|gb|ABI67154.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10] Length = 70 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K++N KG+GFITP+ E GDDVF+H SAV ++GL L++GQ V+++ + D GK Sbjct: 4 GVVKFFNQSKGFGFITPD---EGGDDVFVHISAVQASGLPGLSDGQKVSFE-TEPDRRGK 59 Query: 65 -YSAENLKL 72 A +L+L Sbjct: 60 GPKAVDLQL 68 >gi|226330617|ref|ZP_03806135.1| hypothetical protein PROPEN_04536 [Proteus penneri ATCC 35198] gi|225201412|gb|EEG83766.1| hypothetical protein PROPEN_04536 [Proteus penneri ATCC 35198] Length = 70 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFITP+ ++ DVF+H SA+ S +L EGQ V++ ++N A G Sbjct: 7 GTVKWFNDDKGFGFITPKDGSK---DVFVHFSAIQSDSFKSLKEGQEVSFS-IENGAKGP 62 Query: 65 YSAENLKL 72 +A + L Sbjct: 63 AAANVIAL 70 >gi|291616667|ref|YP_003519409.1| CspE [Pantoea ananatis LMG 20103] gi|304395648|ref|ZP_07377531.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|308186006|ref|YP_003930137.1| Cold shock-like protein cspE (CSP-E) [Pantoea vagans C9-1] gi|317047280|ref|YP_004114928.1| cold-shock DNA-binding domain-containing protein [Pantoea sp. At-9b] gi|291151697|gb|ADD76281.1| CspE [Pantoea ananatis LMG 20103] gi|304356942|gb|EFM21306.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|308056516|gb|ADO08688.1| Cold shock-like protein cspE (CSP-E) [Pantoea vagans C9-1] gi|316948897|gb|ADU68372.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b] gi|327393093|dbj|BAK10515.1| cold shock-like protein CspE [Pantoea ananatis AJ13355] Length = 69 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE ++ DVF+H SA+ S G L EGQ V ++ + + A G Sbjct: 5 KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAIQSNGFKTLAEGQRVEFE-ITDGAKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVISL 69 >gi|239826758|ref|YP_002949382.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70] gi|239807051|gb|ACS24116.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI EG G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQHGKVKWFNNEKGYGFIEVEG----GSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|319651256|ref|ZP_08005386.1| cold shock protein cspD [Bacillus sp. 2_A_57_CT2] gi|317397036|gb|EFV77744.1| cold shock protein cspD [Bacillus sp. 2_A_57_CT2] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI EG GDDVF+H +A+ G +L EGQ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGFGFIEVEG----GDDVFVHFTAIQGEGFKSLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|257884506|ref|ZP_05664159.1| cold-shock protein [Enterococcus faecium 1,231,501] gi|257820344|gb|EEV47492.1| cold-shock protein [Enterococcus faecium 1,231,501] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ V+YD Sbjct: 1 MNNGTVKWFNADKGFGFITG----EDGNDVFAHFSAIQGDGFKTLEEGQAVSYD 50 >gi|330963182|gb|EGH63442.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. actinidiae str. M302091] Length = 70 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56 >gi|330719414|ref|ZP_08314014.1| cold shock protein [Leuconostoc fallax KCTC 3537] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 4/60 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N +KGYGFIT E+G+DVF H SA+ G L EGQ V+++ +D Sbjct: 1 MSEQGTVKWFNGEKGYGFITR----ENGEDVFAHFSAIQGDGFKTLEEGQSVSFEVESSD 56 >gi|228911418|ref|ZP_04075217.1| hypothetical protein bthur0013_55540 [Bacillus thuringiensis IBL 200] gi|228848225|gb|EEM93080.1| hypothetical protein bthur0013_55540 [Bacillus thuringiensis IBL 200] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G +KW+N DKG+GFI EG G+DVF+H SA+ G +L EGQ VT++ Sbjct: 1 MEQGKVKWFNADKGFGFIEREG----GEDVFVHFSAIQIDGFKSLDEGQSVTFE 50 >gi|311068850|ref|YP_003973773.1| cold shock protein [Bacillus atrophaeus 1942] gi|310869367|gb|ADP32842.1| cold shock protein [Bacillus atrophaeus 1942] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N +KG+GFI E+GDDVF+H SA+ G +L EG+ V++D Q Sbjct: 1 MEQGKVKWFNAEKGFGFI----EREAGDDVFVHFSAIQGEGFKSLEEGESVSFDVEQ 53 >gi|307544234|ref|YP_003896713.1| cold shock protein CspA [Halomonas elongata DSM 2581] gi|307216258|emb|CBV41528.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas elongata DSM 2581] Length = 68 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI+P + GDDVF H S + + G +L EGQ V++D Q Sbjct: 4 GTVKWFNDSKGFGFISP---ADGGDDVFAHFSEIQAEGFKSLQEGQSVSFDVTQGKKG-- 58 Query: 65 YSAENLKLV 73 A N+K + Sbjct: 59 LQASNIKAL 67 >gi|269124786|ref|YP_003298156.1| cold-shock DNA-binding domain-containing protein [Thermomonospora curvata DSM 43183] gi|268309744|gb|ACY96118.1| cold-shock DNA-binding domain protein [Thermomonospora curvata DSM 43183] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+NPDKG+GFI+P+ + D+F+H SA+ G L E Q V Y VQ Sbjct: 3 QGTVKWFNPDKGFGFISPD---DGSADIFVHHSAIQMRGFRTLVEEQRVEYTAVQ 54 >gi|28896678|ref|NP_803028.1| cold shock protein [Streptococcus pyogenes SSI-1] gi|71904413|ref|YP_281216.1| cold shock protein [Streptococcus pyogenes MGAS6180] gi|71911578|ref|YP_283128.1| cold shock protein [Streptococcus pyogenes MGAS5005] gi|94989406|ref|YP_597507.1| cold shock protein [Streptococcus pyogenes MGAS9429] gi|94993297|ref|YP_601396.1| cold shock protein [Streptococcus pyogenes MGAS2096] gi|94995255|ref|YP_603353.1| Cold shock protein [Streptococcus pyogenes MGAS10750] gi|209560193|ref|YP_002286665.1| Major cold-shock protein [Streptococcus pyogenes NZ131] gi|306826514|ref|ZP_07459824.1| cold shock protein CspA [Streptococcus pyogenes ATCC 10782] gi|28811932|dbj|BAC64861.1| putative cold shock protein [Streptococcus pyogenes SSI-1] gi|71803508|gb|AAX72861.1| cold shock protein [Streptococcus pyogenes MGAS6180] gi|71854360|gb|AAZ52383.1| cold shock protein [Streptococcus pyogenes MGAS5005] gi|94542914|gb|ABF32963.1| cold shock protein [Streptococcus pyogenes MGAS9429] gi|94546805|gb|ABF36852.1| Cold shock protein [Streptococcus pyogenes MGAS2096] gi|94548763|gb|ABF38809.1| Cold shock protein [Streptococcus pyogenes MGAS10750] gi|209541394|gb|ACI61970.1| Major cold-shock protein [Streptococcus pyogenes NZ131] gi|304431301|gb|EFM34300.1| cold shock protein CspA [Streptococcus pyogenes ATCC 10782] Length = 69 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI STE+G DVF H SA+ + G L EGQ V +D Sbjct: 5 QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVAFD 52 >gi|299138232|ref|ZP_07031411.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX8] gi|298599478|gb|EFI55637.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX8] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GF+ S +GDDVF+H +A+ S G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFL----SRANGDDVFVHHTAIQSNGFRSLQEGQSVQFNVVKGPK 56 Query: 62 NGKYSAENLKLV 73 + AEN+++V Sbjct: 57 G--WQAENVQVV 66 >gi|312114304|ref|YP_004011900.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219433|gb|ADP70801.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 71 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N KG+GFITP+ E G DVF+H SAV +G+ L EG VTY+ Q D Sbjct: 1 MRQTGTVKFFNQAKGFGFITPD---EGGKDVFVHISAVERSGVGMLDEGMRVTYE-TQPD 56 Query: 61 ANGK 64 GK Sbjct: 57 PKGK 60 >gi|260584219|ref|ZP_05851967.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633] gi|260158845|gb|EEW93913.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI E G DVF+H SA+ S G +L EGQ V ++ V+ A Sbjct: 1 MEQGKVKWFNAEKGFGFI----EREDGSDVFVHFSAIQSEGYKSLDEGQAVEFE-VEEGA 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|302545223|ref|ZP_07297565.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302462841|gb|EFL25934.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI +G G DVF H S +A+ G L EGQ VT+D Q G+ Sbjct: 4 GTVKWFNAEKGYGFIEQDG---GGADVFAHYSNIATQGFRELQEGQKVTFDVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 57 KGPQAENIVP 66 >gi|58581493|ref|YP_200509.1| cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426087|gb|AAW75124.1| cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 75 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+PE + DVF H SA+ S G +L EGQ V+YD Q Sbjct: 11 GTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVSYDVTQ 61 >gi|303246711|ref|ZP_07332989.1| cold-shock DNA-binding domain protein [Desulfovibrio fructosovorans JJ] gi|302492051|gb|EFL51929.1| cold-shock DNA-binding domain protein [Desulfovibrio fructosovorans JJ] Length = 68 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW++ KGYGFI EG DDVF+H S++ G L EG+LV +D +Q + Sbjct: 1 MGFEGTVKWFSDKKGYGFIMREGE----DDVFVHYSSIEGEGFRTLREGELVQFDIIQGE 56 >gi|119944526|ref|YP_942206.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119863130|gb|ABM02607.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 68 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI ESG DVF H SA++S G LTEGQ V + Q + Sbjct: 6 GTVKWFNESKGFGFI----EQESGPDVFAHFSAISSTGFKTLTEGQKVQFTVTQGQKGPQ 61 Query: 65 YSAENL 70 AEN+ Sbjct: 62 --AENI 65 >gi|16759589|ref|NP_455206.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764006|ref|NP_459621.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142638|ref|NP_805980.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414236|ref|YP_151311.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|146310817|ref|YP_001175891.1| cold shock protein CspE [Enterobacter sp. 638] gi|161615160|ref|YP_001589125.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|162139604|ref|YP_215645.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167990632|ref|ZP_02571732.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|194444501|ref|YP_002039870.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448211|ref|YP_002044662.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472567|ref|ZP_03078551.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735055|ref|YP_002113746.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195873911|ref|ZP_02699682.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197251616|ref|YP_002145603.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262485|ref|ZP_03162559.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197300846|ref|ZP_02661676.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197363159|ref|YP_002142796.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244715|ref|YP_002214617.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390458|ref|ZP_03217069.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930521|ref|ZP_03221451.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351917|ref|YP_002225718.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205357082|ref|ZP_02344593.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205358472|ref|ZP_02656696.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205358940|ref|ZP_02665405.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205359626|ref|ZP_02830749.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205360370|ref|ZP_02682831.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|213053415|ref|ZP_03346293.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425108|ref|ZP_03357858.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580429|ref|ZP_03362255.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648627|ref|ZP_03378680.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857366|ref|ZP_03384337.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582464|ref|YP_002636262.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911579|ref|ZP_04655416.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289809995|ref|ZP_06540624.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|311280471|ref|YP_003942702.1| cold-shock DNA-binding domain-containing protein [Enterobacter cloacae SCF1] gi|25296131|pir||AH0579 cold shock-like protein cspE [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419141|gb|AAL19580.1| RNA chaperone, negative regulator of cspA transcription [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501881|emb|CAD05106.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Typhi] gi|29138269|gb|AAO69840.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128493|gb|AAV77999.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|145317693|gb|ABP59840.1| cold shock protein E (CspE) [Enterobacter sp. 638] gi|161364524|gb|ABX68292.1| hypothetical protein SPAB_02928 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403164|gb|ACF63386.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406515|gb|ACF66734.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458931|gb|EDX47770.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710557|gb|ACF89778.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631943|gb|EDX50463.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094636|emb|CAR60158.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197215319|gb|ACH52716.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240740|gb|EDY23360.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290243|gb|EDY29599.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939231|gb|ACH76564.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602903|gb|EDZ01449.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320455|gb|EDZ05658.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271698|emb|CAR36529.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324288|gb|EDZ12127.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330839|gb|EDZ17603.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334064|gb|EDZ20828.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340419|gb|EDZ27183.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344148|gb|EDZ30912.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349743|gb|EDZ36374.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224466991|gb|ACN44821.1| cold shock protein E [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245902|emb|CBG23703.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992359|gb|ACY87244.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|308749666|gb|ADO49418.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1] gi|312911660|dbj|BAJ35634.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084898|emb|CBY94688.1| Cold shock-like protein cspE CSP-E [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226208|gb|EFX51259.1| Cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613239|gb|EFY10182.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621307|gb|EFY18164.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623727|gb|EFY20565.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628999|gb|EFY25778.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631721|gb|EFY28475.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637543|gb|EFY34245.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641883|gb|EFY38513.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646727|gb|EFY43233.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651428|gb|EFY47808.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653121|gb|EFY49455.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658841|gb|EFY55096.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664889|gb|EFY61082.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668891|gb|EFY65043.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670603|gb|EFY66736.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675344|gb|EFY71420.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682185|gb|EFY78210.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684985|gb|EFY80982.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713693|gb|EFZ05264.1| RNA chaperone, negative regulator of cspA transcription [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128946|gb|ADX16376.1| cold shock-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193956|gb|EFZ79158.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197952|gb|EFZ83074.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202001|gb|EFZ87061.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207134|gb|EFZ92087.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210399|gb|EFZ95290.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214339|gb|EFZ99090.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221490|gb|EGA05904.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225534|gb|EGA09764.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231092|gb|EGA15208.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234076|gb|EGA18165.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238229|gb|EGA22287.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242537|gb|EGA26561.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248486|gb|EGA32420.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251298|gb|EGA35170.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259226|gb|EGA42869.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261634|gb|EGA45209.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264816|gb|EGA48317.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272347|gb|EGA55754.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622372|gb|EGE28717.1| RNA chaperone, negative regulator of cspA transcription [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626956|gb|EGE33299.1| cold shock-like protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987574|gb|AEF06557.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 69 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ + N A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 60 Query: 64 KYSA 67 +A Sbjct: 61 PSAA 64 >gi|311743915|ref|ZP_07717721.1| CspA family cold shock transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311313045|gb|EFQ82956.1| CspA family cold shock transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N DKG+GFI P+G G+D+F H S++A++G +L E Q V +D Q Sbjct: 4 GTVKWFNADKGFGFIAPDG---GGEDLFAHFSSIAASGFRSLDENQKVEFDVEQ 54 >gi|269792002|ref|YP_003316906.1| cold-shock DNA-binding domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099637|gb|ACZ18624.1| cold-shock DNA-binding domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N KGYGFIT T+ G DVF H SA+ G L EGQ V+ D V+ Sbjct: 1 MATQGTVKWFNATKGYGFIT----TDEGRDVFCHFSAIKMDGYRTLEEGQRVSLD-VEMG 55 Query: 61 ANGKYSAENLKL 72 G+ +A +KL Sbjct: 56 PKGEQAANVVKL 67 >gi|295094368|emb|CBK83459.1| cold-shock DNA-binding protein family [Coprococcus sp. ART55/1] Length = 71 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N +KGYGFI+ + E+G DVF+H SA+ S G L EGQ VT+D Sbjct: 1 MKNGTVKWFNGEKGYGFISDD---ETGKDVFVHFSAINSDGYKTLNEGQKVTFD 51 >gi|331269838|ref|YP_004396330.1| cold shock protein [Clostridium botulinum BKT015925] gi|329126388|gb|AEB76333.1| cold shock protein [Clostridium botulinum BKT015925] Length = 65 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFIT TE G+DVF H S + G L EGQ V++D V+ A G Sbjct: 3 GTVKWFNAEKGFGFIT----TEEGNDVFAHFSQINKEGFKTLEEGQNVSFDVVEG-AKGP 57 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 58 -QAENITIL 65 >gi|310816002|ref|YP_003963966.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium vulgare Y25] gi|308754737|gb|ADO42666.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium vulgare Y25] Length = 68 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE ++ DVF+H S++ +G+ +L +GQ V++D ++ +G+ Sbjct: 4 GTVKWFNATKGFGFIAPESGSK---DVFVHISSMQRSGISDLADGQKVSFD-IEEGRDGR 59 Query: 65 YSAENLKL 72 +A N+ L Sbjct: 60 ENAINITL 67 >gi|281500776|pdb|3I2Z|B Chain B, Structure Of Cold Shock Protein E From Salmonella Typhimurium gi|281500777|pdb|3I2Z|A Chain A, Structure Of Cold Shock Protein E From Salmonella Typhimurium Length = 71 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ + N A G Sbjct: 7 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 62 Query: 64 KYSA 67 +A Sbjct: 63 PSAA 66 >gi|207856095|ref|YP_002242746.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206707898|emb|CAR32186.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|301157230|emb|CBW16717.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 70 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ + N A G Sbjct: 6 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE-ITNGAKG 61 Query: 64 KYSA 67 +A Sbjct: 62 PSAA 65 >gi|197284318|ref|YP_002150190.1| cold shock protein CspE [Proteus mirabilis HI4320] gi|227358541|ref|ZP_03842866.1| cold shock protein [Proteus mirabilis ATCC 29906] gi|194681805|emb|CAR41046.1| putative cold shock protein [Proteus mirabilis HI4320] gi|227161252|gb|EEI46326.1| cold shock protein [Proteus mirabilis ATCC 29906] Length = 69 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE ++ DVF+H SA+ S G L EGQ V ++ V + A G Sbjct: 5 KGNVKWFNETKGFGFITPEDGSK---DVFVHFSAIVSEGFKTLAEGQKVEFE-VTDGAKG 60 Query: 64 KYSA 67 +A Sbjct: 61 PSAA 64 >gi|188025849|ref|ZP_02960049.2| hypothetical protein PROSTU_01951 [Providencia stuartii ATCC 25827] gi|188020731|gb|EDU58771.1| hypothetical protein PROSTU_01951 [Providencia stuartii ATCC 25827] Length = 85 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ AG L EGQ V + ++N A G Sbjct: 21 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGAGFKTLAEGQQVEFT-IENGAKG 76 Query: 64 KYSA 67 +A Sbjct: 77 PAAA 80 >gi|251794338|ref|YP_003009069.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] gi|247541964|gb|ACS98982.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] Length = 66 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG G+DVF+H SA+ G +L EGQ V ++ VQ Sbjct: 1 MEQGTVKWFNAEKGFGFIEVEG----GNDVFVHFSAIQGDGFKSLDEGQRVEFNIVQ--G 54 Query: 62 NGKYSAENL 70 N AEN+ Sbjct: 55 NRGPQAENV 63 >gi|253573284|ref|ZP_04850627.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846812|gb|EES74817.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 65 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI EG G+DVF+H SA+ G L EGQ V ++ + + G Sbjct: 2 KGTVKWFNAEKGYGFIQVEG----GEDVFVHFSAIQGEGFKTLEEGQAVEFE-ITDGNRG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|238015158|gb|ACR38614.1| unknown [Zea mays] Length = 240 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG++KW+N KG+GFI+PE +E D+F+H+S++ S G +L EG+ V + + D Sbjct: 7 QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD 61 >gi|224033945|gb|ACN36048.1| unknown [Zea mays] Length = 249 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG++KW+N KG+GFI+PE +E D+F+H+S++ S G +L EG+ V + + D Sbjct: 7 QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD 61 >gi|313891994|ref|ZP_07825595.1| cold shock-like protein CspE [Dialister microaerophilus UPII 345-E] gi|329120945|ref|ZP_08249576.1| cold shock protein [Dialister micraerophilus DSM 19965] gi|313119637|gb|EFR42828.1| cold shock-like protein CspE [Dialister microaerophilus UPII 345-E] gi|327471107|gb|EGF16561.1| cold shock protein [Dialister micraerophilus DSM 19965] Length = 65 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 5/64 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ +KGYGFI E G DVF+H SA+ + G LTEGQ V +D ++ A G Sbjct: 2 KGTVKWFSAEKGYGFI----EREEGGDVFVHFSAIQTEGFKTLTEGQKVEFDIIEG-ARG 56 Query: 64 KYSA 67 +A Sbjct: 57 PQAA 60 >gi|294498234|ref|YP_003561934.1| cold shock protein [Bacillus megaterium QM B1551] gi|295703585|ref|YP_003596660.1| cold shock protein [Bacillus megaterium DSM 319] gi|294348171|gb|ADE68500.1| cold shock protein [Bacillus megaterium QM B1551] gi|294801244|gb|ADF38310.1| cold shock protein [Bacillus megaterium DSM 319] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KGYGFI EG G DVF+H SA+ S G +L EGQ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGYGFIEVEG----GSDVFVHFSAIQSEGYKSLEEGQEVSFEIVEGN 55 >gi|220933359|ref|YP_002512258.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994669|gb|ACL71271.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 67 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G DVF+H SA++ +G L E Q V++D VQ+ G Sbjct: 4 GTVKWFNESKGFGFITPD---DGGKDVFVHFSAISGSGFKTLAENQKVSFD-VQDGPKGP 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|117926229|ref|YP_866846.1| cold-shock DNA-binding protein family protein [Magnetococcus sp. MC-1] gi|117609985|gb|ABK45440.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1] Length = 69 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KGYGFI S E G DVF+H SA+ +G LT+GQ V +D VQ Sbjct: 7 GTVKFFNEQKGYGFI----SREDGSDVFVHFSAIQGSGFRTLTQGQKVEFDTVQGKKG-- 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 LQAENV 66 >gi|284990416|ref|YP_003408970.1| cold-shock DNA-binding domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284063661|gb|ADB74599.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus DSM 43160] Length = 67 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GF TP+G G DVF+H SA+ ++G +L EGQ +++D Q Sbjct: 3 EGTVKWFNAEKGFGFATPDG---GGPDVFVHYSAIQTSGYRSLDEGQRISFDIEQ 54 >gi|322412804|gb|EFY03712.1| Major cold-shock protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323128184|gb|ADX25481.1| Major cold-shock protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 67 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI STE+G DVF H SA+ + G L EGQ V +D Sbjct: 3 QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVEFD 50 >gi|237746806|ref|ZP_04577286.1| cold-shock DNA-binding family protein [Oxalobacter formigenes HOxBLS] gi|229378157|gb|EEO28248.1| cold-shock DNA-binding family protein [Oxalobacter formigenes HOxBLS] Length = 67 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ E G+DVF H SA+ S G +L E Q V++D + GK Sbjct: 4 GTVKWFNDSKGFGFITPD---EGGEDVFAHFSAINSEGFKSLKENQRVSFD-ITTGPKGK 59 Query: 65 YSAENLKLV 73 A N+ ++ Sbjct: 60 -QASNITVI 67 >gi|21243129|ref|NP_642711.1| major cold shock protein [Xanthomonas axonopodis pv. citri str. 306] gi|78048148|ref|YP_364323.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325928087|ref|ZP_08189300.1| cold-shock DNA-binding protein family [Xanthomonas perforans 91-118] gi|21108648|gb|AAM37247.1| major cold shock protein [Xanthomonas axonopodis pv. citri str. 306] gi|78036578|emb|CAJ24269.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541585|gb|EGD13114.1| cold-shock DNA-binding protein family [Xanthomonas perforans 91-118] Length = 69 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQ 58 >gi|325916970|ref|ZP_08179212.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] gi|325536821|gb|EGD08575.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] Length = 69 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQ 58 >gi|307825897|ref|ZP_07656112.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307733016|gb|EFO03878.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 69 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI EG G DVF+H SA+ AG L EGQ VT + Q Sbjct: 7 GTVKWFNDEKGFGFIEQEG----GKDVFVHHSAINGAGRKTLREGQKVTMEVTQ 56 >gi|90415487|ref|ZP_01223421.1| Cold shock protein [marine gamma proteobacterium HTCC2207] gi|90332810|gb|EAS47980.1| Cold shock protein [marine gamma proteobacterium HTCC2207] Length = 69 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI EG G DVF+H SA+ + G +L EGQ VT + Q + Sbjct: 7 GTVKWFNDSKGFGFIEQEG----GGDVFVHHSAIQADGFKSLKEGQAVTMEVTQGQKGAQ 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 --AENV 66 >gi|27904911|ref|NP_778037.1| cold shock protein CspE [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372204|sp|Q89A90|CSPE_BUCBP RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|27904309|gb|AAO27142.1| cold shock protein CspA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 69 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L+EGQ V ++ + A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLSEGQSVEFE-ITEGAKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVISL 69 >gi|16801190|ref|NP_471458.1| hypothetical protein lin2124 [Listeria innocua Clip11262] gi|16804055|ref|NP_465540.1| hypothetical protein lmo2016 [Listeria monocytogenes EGD-e] gi|46908245|ref|YP_014634.1| cold-shock domain-contain protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093186|ref|ZP_00230960.1| cold-shock domain family protein [Listeria monocytogenes str. 4b H7858] gi|47096659|ref|ZP_00234246.1| cold-shock domain family protein [Listeria monocytogenes str. 1/2a F6854] gi|116873452|ref|YP_850233.1| cold shock-like protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217963837|ref|YP_002349515.1| hypothetical protein LMHCC_0544 [Listeria monocytogenes HCC23] gi|224498533|ref|ZP_03666882.1| hypothetical protein LmonF1_02104 [Listeria monocytogenes Finland 1988] gi|224501183|ref|ZP_03669490.1| hypothetical protein LmonFR_01460 [Listeria monocytogenes FSL R2-561] gi|226224613|ref|YP_002758720.1| major cold-shock protein [Listeria monocytogenes Clip81459] gi|254825493|ref|ZP_05230494.1| cold-shock domain family protein [Listeria monocytogenes FSL J1-194] gi|254827097|ref|ZP_05231784.1| cspB [Listeria monocytogenes FSL N3-165] gi|254831742|ref|ZP_05236397.1| major cold-shock protein [Listeria monocytogenes 10403S] gi|254854374|ref|ZP_05243722.1| cold-shock domain family protein [Listeria monocytogenes FSL R2-503] gi|254899286|ref|ZP_05259210.1| major cold-shock protein [Listeria monocytogenes J0161] gi|254912575|ref|ZP_05262587.1| cspB [Listeria monocytogenes J2818] gi|254931816|ref|ZP_05265175.1| cold-shock domain family protein [Listeria monocytogenes HPB2262] gi|254936901|ref|ZP_05268598.1| cold-shock domain family protein [Listeria monocytogenes F6900] gi|255022834|ref|ZP_05294820.1| major cold-shock protein [Listeria monocytogenes FSL J1-208] gi|255029500|ref|ZP_05301451.1| major cold-shock protein [Listeria monocytogenes LO28] gi|255521591|ref|ZP_05388828.1| major cold-shock protein [Listeria monocytogenes FSL J1-175] gi|284802462|ref|YP_003414327.1| hypothetical protein LM5578_2218 [Listeria monocytogenes 08-5578] gi|284995604|ref|YP_003417372.1| hypothetical protein LM5923_2169 [Listeria monocytogenes 08-5923] gi|290892166|ref|ZP_06555162.1| cold-shock domain-containing protein [Listeria monocytogenes FSL J2-071] gi|300763679|ref|ZP_07073676.1| cold-shock domain family protein [Listeria monocytogenes FSL N1-017] gi|61221528|sp|P0A357|CSPB_LISMO RecName: Full=Cold shock-like protein CspLB; Short=CspB gi|61221529|sp|P0A358|CSPB_LISIN RecName: Full=Cold shock-like protein CspLB; Short=CspB gi|12054789|emb|CAC20631.1| cold shock protein (CspLB) [Listeria monocytogenes] gi|16411469|emb|CAD00094.1| cspB [Listeria monocytogenes EGD-e] gi|16414638|emb|CAC97354.1| cspB [Listeria innocua Clip11262] gi|46881516|gb|AAT04811.1| cold-shock domain family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47014981|gb|EAL05927.1| cold-shock domain family protein [Listeria monocytogenes str. 1/2a F6854] gi|47018437|gb|EAL09196.1| cold-shock domain family protein [Listeria monocytogenes str. 4b H7858] gi|116742330|emb|CAK21454.1| cold shock-like protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217333107|gb|ACK38901.1| conserved domain protein [Listeria monocytogenes HCC23] gi|225877075|emb|CAS05786.1| Putative major cold-shock protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599480|gb|EEW12805.1| cspB [Listeria monocytogenes FSL N3-165] gi|258607773|gb|EEW20381.1| cold-shock domain family protein [Listeria monocytogenes FSL R2-503] gi|258609499|gb|EEW22107.1| cold-shock domain family protein [Listeria monocytogenes F6900] gi|284058024|gb|ADB68965.1| hypothetical protein LM5578_2218 [Listeria monocytogenes 08-5578] gi|284061071|gb|ADB72010.1| hypothetical protein LM5923_2169 [Listeria monocytogenes 08-5923] gi|290558289|gb|EFD91807.1| cold-shock domain-containing protein [Listeria monocytogenes FSL J2-071] gi|293583370|gb|EFF95402.1| cold-shock domain family protein [Listeria monocytogenes HPB2262] gi|293590564|gb|EFF98898.1| cspB [Listeria monocytogenes J2818] gi|293594735|gb|EFG02496.1| cold-shock domain family protein [Listeria monocytogenes FSL J1-194] gi|300515415|gb|EFK42465.1| cold-shock domain family protein [Listeria monocytogenes FSL N1-017] gi|307571592|emb|CAR84771.1| cold-shock domain family protein [Listeria monocytogenes L99] gi|313607794|gb|EFR83992.1| putative cold-shock protein [Listeria monocytogenes FSL F2-208] gi|313618008|gb|EFR90155.1| putative cold-shock protein [Listeria innocua FSL S4-378] gi|313623004|gb|EFR93297.1| putative cold-shock protein [Listeria innocua FSL J1-023] gi|328466357|gb|EGF37514.1| hypothetical protein LM1816_12332 [Listeria monocytogenes 1816] gi|332312449|gb|EGJ25544.1| Cold shock-like protein CspD [Listeria monocytogenes str. Scott A] Length = 66 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ V ++ V+ Sbjct: 1 MQTGTVKWFNSEKGFGFIEVEG----GDDVFVHFSAIEGEGFKTLDEGQSVEFEIVE 53 >gi|331700983|ref|YP_004397942.1| cold-shock DNA-binding domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329128326|gb|AEB72879.1| cold-shock DNA-binding domain protein [Lactobacillus buchneri NRRL B-30929] Length = 67 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKGYGFIT E G DVF+H SA+ + G L EGQ VT D +D Sbjct: 1 MEQGTVKWFNGDKGYGFIT----LEDGKDVFVHFSAINADGYKTLEEGQKVTLDVEDSD 55 >gi|242063850|ref|XP_002453214.1| hypothetical protein SORBIDRAFT_04g001720 [Sorghum bicolor] gi|241933045|gb|EES06190.1| hypothetical protein SORBIDRAFT_04g001720 [Sorghum bicolor] Length = 251 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG++KW+N KG+GFI+PE +E D+F+H+S++ S G +L EG+ V + + D Sbjct: 7 QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD 61 >gi|149242120|pdb|2I5L|X Chain X, Crystal Structure Of Bacillus Subtilis Cold Shock Protein Variant Bs-Cspb M1rE3KK65I Length = 67 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 3 KGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN 55 >gi|91199641|emb|CAI77996.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|96771688|emb|CAI78270.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|114049906|emb|CAK50923.1| putative cold shock protein [Streptomyces ambofaciens] gi|114050128|emb|CAK51161.1| putative cold shock protein [Streptomyces ambofaciens] gi|117164235|emb|CAJ87776.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|126347347|emb|CAJ89054.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] Length = 67 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI+P+ E G DVF+H SA+ +G NL E Q V ++ Q Sbjct: 3 QGTVKWFNGEKGFGFISPD---EGGPDVFVHFSAIQGSGFRNLEENQRVEFEITQ 54 >gi|307545830|ref|YP_003898309.1| cold shock protein CspA [Halomonas elongata DSM 2581] gi|307217854|emb|CBV43124.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas elongata DSM 2581] Length = 68 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI+P+ ++GDD+F H S + + G +L +GQ V++D Q Sbjct: 4 GTVKWFNDTKGFGFISPD---DNGDDLFAHFSEIQAEGFKSLQDGQKVSFDVTQGKKG-- 58 Query: 65 YSAENLKLV 73 A N+K+V Sbjct: 59 LQASNIKVV 67 >gi|152975949|ref|YP_001375466.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024701|gb|ABS22471.1| putative cold-shock DNA-binding domain protein [Bacillus cytotoxicus NVH 391-98] Length = 66 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNAEKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN 55 >gi|30021641|ref|NP_833272.1| cold shock protein [Bacillus cereus ATCC 14579] gi|30263487|ref|NP_845864.1| cold shock protein CspB [Bacillus anthracis str. Ames] gi|42782603|ref|NP_979850.1| cold shock protein CspB [Bacillus cereus ATCC 10987] gi|47528880|ref|YP_020229.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor'] gi|47569978|ref|ZP_00240642.1| cold-shock domain family protein-related protein [Bacillus cereus G9241] gi|49186338|ref|YP_029590.1| cold shock protein CspB [Bacillus anthracis str. Sterne] gi|49479281|ref|YP_037619.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141994|ref|YP_084834.1| cold shock protein [Bacillus cereus E33L] gi|118478788|ref|YP_895939.1| cold-shock DNA-binding protein family protein [Bacillus thuringiensis str. Al Hakam] gi|167637065|ref|ZP_02395345.1| cold shock protein CspB [Bacillus anthracis str. A0193] gi|190564523|ref|ZP_03017444.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I] gi|196034229|ref|ZP_03101639.1| cold shock protein CspB [Bacillus cereus W] gi|196038347|ref|ZP_03105656.1| cold shock protein CspB [Bacillus cereus NVH0597-99] gi|196043023|ref|ZP_03110262.1| cold shock protein CspB [Bacillus cereus 03BB108] gi|206969007|ref|ZP_03229962.1| cold shock protein CspB [Bacillus cereus AH1134] gi|206975495|ref|ZP_03236408.1| cold shock protein CspB [Bacillus cereus H3081.97] gi|217960932|ref|YP_002339500.1| cold shock protein CspB [Bacillus cereus AH187] gi|218232785|ref|YP_002368351.1| cold shock protein CspB [Bacillus cereus B4264] gi|218898630|ref|YP_002447041.1| cold shock protein CspB [Bacillus cereus G9842] gi|218904664|ref|YP_002452498.1| cold shock protein CspB [Bacillus cereus AH820] gi|222096990|ref|YP_002531047.1| cold shock protein [Bacillus cereus Q1] gi|225865502|ref|YP_002750880.1| cold shock protein CspB [Bacillus cereus 03BB102] gi|227813634|ref|YP_002813643.1| cold shock protein CspB [Bacillus anthracis str. CDC 684] gi|228902007|ref|ZP_04066172.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|228912180|ref|ZP_04075895.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|228916152|ref|ZP_04079722.1| Cold shock protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228922246|ref|ZP_04085553.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228928576|ref|ZP_04091613.1| Cold shock protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934813|ref|ZP_04097644.1| Cold shock protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228940621|ref|ZP_04103187.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228947154|ref|ZP_04109448.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228953805|ref|ZP_04115844.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959724|ref|ZP_04121399.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228969486|ref|ZP_04130298.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228973540|ref|ZP_04134124.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980099|ref|ZP_04140415.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|228986625|ref|ZP_04146756.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229047204|ref|ZP_04192818.1| Cold shock protein cspB [Bacillus cereus AH676] gi|229071035|ref|ZP_04204261.1| Cold shock protein cspB [Bacillus cereus F65185] gi|229080742|ref|ZP_04213260.1| Cold shock protein cspB [Bacillus cereus Rock4-2] gi|229092502|ref|ZP_04223658.1| Cold shock protein cspB [Bacillus cereus Rock3-42] gi|229110960|ref|ZP_04240521.1| Cold shock protein cspB [Bacillus cereus Rock1-15] gi|229123055|ref|ZP_04252262.1| Cold shock protein cspB [Bacillus cereus 95/8201] gi|229128809|ref|ZP_04257786.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4] gi|229140143|ref|ZP_04268701.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26] gi|229146104|ref|ZP_04274481.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|229151732|ref|ZP_04279933.1| Cold shock protein cspB [Bacillus cereus m1550] gi|229159169|ref|ZP_04287204.1| Cold shock protein cspB [Bacillus cereus ATCC 4342] gi|229162371|ref|ZP_04290334.1| Cold shock protein cspB [Bacillus cereus R309803] gi|229179821|ref|ZP_04307168.1| Cold shock protein cspB [Bacillus cereus 172560W] gi|229185756|ref|ZP_04312933.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1] gi|229191625|ref|ZP_04318604.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|229197647|ref|ZP_04324368.1| Cold shock protein cspB [Bacillus cereus m1293] gi|229600528|ref|YP_002867733.1| cold shock protein CspB [Bacillus anthracis str. A0248] gi|254686104|ref|ZP_05149963.1| cold shock protein CspB [Bacillus anthracis str. CNEVA-9066] gi|254723505|ref|ZP_05185293.1| cold shock protein CspB [Bacillus anthracis str. A1055] gi|254738577|ref|ZP_05196280.1| cold shock protein CspB [Bacillus anthracis str. Western North America USA6153] gi|254744864|ref|ZP_05202542.1| cold shock protein CspB [Bacillus anthracis str. Kruger B] gi|296504044|ref|YP_003665744.1| cold shock protein [Bacillus thuringiensis BMB171] gi|300117665|ref|ZP_07055447.1| cold shock protein CspB [Bacillus cereus SJ1] gi|301055025|ref|YP_003793236.1| cold shock protein [Bacillus anthracis CI] gi|29897196|gb|AAP10473.1| Cold shock protein [Bacillus cereus ATCC 14579] gi|30258122|gb|AAP27350.1| cold shock protein CspB [Bacillus anthracis str. Ames] gi|42738529|gb|AAS42458.1| cold shock protein CspB [Bacillus cereus ATCC 10987] gi|47504028|gb|AAT32704.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor'] gi|47553376|gb|EAL11763.1| cold-shock domain family protein-related protein [Bacillus cereus G9241] gi|49180265|gb|AAT55641.1| cold shock protein CspB [Bacillus anthracis str. Sterne] gi|49330837|gb|AAT61483.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975463|gb|AAU17013.1| cold shock protein [Bacillus cereus E33L] gi|118418013|gb|ABK86432.1| cold-shock DNA-binding protein family [Bacillus thuringiensis str. Al Hakam] gi|167514572|gb|EDR89938.1| cold shock protein CspB [Bacillus anthracis str. A0193] gi|190563840|gb|EDV17804.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I] gi|195993303|gb|EDX57261.1| cold shock protein CspB [Bacillus cereus W] gi|196026507|gb|EDX65175.1| cold shock protein CspB [Bacillus cereus 03BB108] gi|196030755|gb|EDX69353.1| cold shock protein CspB [Bacillus cereus NVH0597-99] gi|206736048|gb|EDZ53206.1| cold shock protein CspB [Bacillus cereus AH1134] gi|206746397|gb|EDZ57791.1| cold shock protein CspB [Bacillus cereus H3081.97] gi|217063996|gb|ACJ78246.1| cold shock protein CspB [Bacillus cereus AH187] gi|218160742|gb|ACK60734.1| cold shock protein CspB [Bacillus cereus B4264] gi|218538592|gb|ACK90990.1| cold shock protein CspB [Bacillus cereus AH820] gi|218542988|gb|ACK95382.1| cold shock protein CspB [Bacillus cereus G9842] gi|221241048|gb|ACM13758.1| cold shock protein [Bacillus cereus Q1] gi|225790203|gb|ACO30420.1| cold shock protein CspB [Bacillus cereus 03BB102] gi|227002717|gb|ACP12460.1| cold shock protein CspB [Bacillus anthracis str. CDC 684] gi|228585836|gb|EEK43933.1| Cold shock protein cspB [Bacillus cereus m1293] gi|228591787|gb|EEK49627.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|228597728|gb|EEK55371.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1] gi|228603650|gb|EEK61124.1| Cold shock protein cspB [Bacillus cereus 172560W] gi|228621055|gb|EEK77918.1| Cold shock protein cspB [Bacillus cereus R309803] gi|228624303|gb|EEK81095.1| Cold shock protein cspB [Bacillus cereus ATCC 4342] gi|228631793|gb|EEK88421.1| Cold shock protein cspB [Bacillus cereus m1550] gi|228637444|gb|EEK93897.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|228643229|gb|EEK99502.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26] gi|228654697|gb|EEL10558.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4] gi|228660349|gb|EEL15982.1| Cold shock protein cspB [Bacillus cereus 95/8201] gi|228672541|gb|EEL27824.1| Cold shock protein cspB [Bacillus cereus Rock1-15] gi|228690789|gb|EEL44564.1| Cold shock protein cspB [Bacillus cereus Rock3-42] gi|228702476|gb|EEL54944.1| Cold shock protein cspB [Bacillus cereus Rock4-2] gi|228711975|gb|EEL63924.1| Cold shock protein cspB [Bacillus cereus F65185] gi|228724165|gb|EEL75508.1| Cold shock protein cspB [Bacillus cereus AH676] gi|228773110|gb|EEM21545.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228779685|gb|EEM27936.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|228786235|gb|EEM34230.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228790229|gb|EEM37999.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228799854|gb|EEM46796.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805773|gb|EEM52353.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228812401|gb|EEM58728.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228819127|gb|EEM65186.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228824713|gb|EEM70514.1| Cold shock protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228831088|gb|EEM76688.1| Cold shock protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228837301|gb|EEM82635.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228843350|gb|EEM88428.1| Cold shock protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228847517|gb|EEM92456.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|228857593|gb|EEN02088.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|229264936|gb|ACQ46573.1| cold shock protein CspB [Bacillus anthracis str. A0248] gi|296325096|gb|ADH08024.1| cold shock protein [Bacillus thuringiensis BMB171] gi|298724998|gb|EFI65658.1| cold shock protein CspB [Bacillus cereus SJ1] gi|300377194|gb|ADK06098.1| cold shock protein [Bacillus cereus biovar anthracis str. CI] gi|324327436|gb|ADY22696.1| cold shock protein CspB [Bacillus thuringiensis serovar finitimus YBT-020] gi|326941254|gb|AEA17150.1| cold shock protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 66 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNSEKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN 55 >gi|301056652|ref|YP_003794863.1| cold shock protein [Bacillus anthracis CI] gi|300378821|gb|ADK07725.1| cold shock protein [Bacillus cereus biovar anthracis str. CI] Length = 67 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V +D V + Sbjct: 1 MNMQGRVKWFNAEKGFGFI----EREDGEDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55 Query: 61 ANGKYSAENLKL 72 A G +A +KL Sbjct: 56 ARGPQAANVVKL 67 >gi|149928086|ref|ZP_01916333.1| Cold-shock DNA-binding domain protein [Limnobacter sp. MED105] gi|149823172|gb|EDM82409.1| Cold-shock DNA-binding domain protein [Limnobacter sp. MED105] Length = 73 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 5/73 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + D++F H SA+ ++G L EGQ VT++ V D Sbjct: 4 GTVKWFNDAKGFGFITPD---QGSDELFAHFSAIQASGFRTLKEGQKVTFEVV--DGPKG 58 Query: 65 YSAENLKLVPKSS 77 A+N+ ++ +S Sbjct: 59 KQAQNISVMDATS 71 >gi|147856673|emb|CAN81359.1| hypothetical protein VITISV_040408 [Vitis vinifera] Length = 219 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + GDD+F+H+S++ S G +L EG+ V + V++ +G+ Sbjct: 6 GTVKWFNDQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDGR 61 Query: 65 YSA 67 A Sbjct: 62 TKA 64 >gi|30022927|ref|NP_834558.1| cold shock protein [Bacillus cereus ATCC 14579] gi|30264924|ref|NP_847301.1| cold shock protein CspD [Bacillus anthracis str. Ames] gi|42784065|ref|NP_981312.1| cold shock protein CspD [Bacillus cereus ATCC 10987] gi|47530419|ref|YP_021768.1| cold shock protein CspD [Bacillus anthracis str. 'Ames Ancestor'] gi|47568038|ref|ZP_00238744.1| cold-shock domain family protein-related protein [Bacillus cereus G9241] gi|49187745|ref|YP_030998.1| cold shock protein CspD [Bacillus anthracis str. Sterne] gi|49478797|ref|YP_038904.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140641|ref|YP_086189.1| cold shock protein [Bacillus cereus E33L] gi|65322228|ref|ZP_00395187.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012] gi|118479979|ref|YP_897130.1| cold-shock DNA-binding protein family protein [Bacillus thuringiensis str. Al Hakam] gi|165869712|ref|ZP_02214370.1| cold shock protein CspD [Bacillus anthracis str. A0488] gi|167633815|ref|ZP_02392138.1| cold shock protein CspD [Bacillus anthracis str. A0442] gi|167637994|ref|ZP_02396272.1| cold shock protein CspD [Bacillus anthracis str. A0193] gi|170685769|ref|ZP_02876992.1| cold shock protein CspD [Bacillus anthracis str. A0465] gi|170705396|ref|ZP_02895860.1| cold shock protein CspD [Bacillus anthracis str. A0389] gi|177651104|ref|ZP_02933935.1| cold shock protein CspD [Bacillus anthracis str. A0174] gi|190567127|ref|ZP_03020042.1| cold shock protein CspD [Bacillus anthracis Tsiankovskii-I] gi|196032813|ref|ZP_03100226.1| cold shock protein CspD [Bacillus cereus W] gi|196041478|ref|ZP_03108771.1| cold shock protein CspD [Bacillus cereus NVH0597-99] gi|196044044|ref|ZP_03111281.1| cold shock protein CspD [Bacillus cereus 03BB108] gi|206969776|ref|ZP_03230730.1| cold shock protein CspD [Bacillus cereus AH1134] gi|206977004|ref|ZP_03237905.1| cold shock protein CspD [Bacillus cereus H3081.97] gi|217962350|ref|YP_002340922.1| cold shock protein CspD [Bacillus cereus AH187] gi|218234055|ref|YP_002369674.1| cold shock protein CspD [Bacillus cereus B4264] gi|218906084|ref|YP_002453918.1| cold shock protein CspD [Bacillus cereus AH820] gi|222098335|ref|YP_002532392.1| cold shock protein [Bacillus cereus Q1] gi|225866859|ref|YP_002752237.1| cold shock protein CspD [Bacillus cereus 03BB102] gi|227817655|ref|YP_002817664.1| cold shock protein CspD [Bacillus anthracis str. CDC 684] gi|228917511|ref|ZP_04081060.1| Cold shock protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923616|ref|ZP_04086896.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228929909|ref|ZP_04092924.1| Cold shock protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936170|ref|ZP_04098973.1| Cold shock protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948606|ref|ZP_04110885.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228955142|ref|ZP_04117156.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961133|ref|ZP_04122759.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228988125|ref|ZP_04148224.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229048573|ref|ZP_04194133.1| Cold shock protein cspB [Bacillus cereus AH676] gi|229072368|ref|ZP_04205572.1| Cold shock protein cspB [Bacillus cereus F65185] gi|229082122|ref|ZP_04214595.1| Cold shock protein cspB [Bacillus cereus Rock4-2] gi|229087391|ref|ZP_04219530.1| Cold shock protein cspB [Bacillus cereus Rock3-44] gi|229093978|ref|ZP_04225069.1| Cold shock protein cspB [Bacillus cereus Rock3-42] gi|229112327|ref|ZP_04241866.1| Cold shock protein cspB [Bacillus cereus Rock1-15] gi|229124425|ref|ZP_04253613.1| Cold shock protein cspB [Bacillus cereus 95/8201] gi|229130142|ref|ZP_04259103.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4] gi|229141600|ref|ZP_04270132.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26] gi|229147434|ref|ZP_04275783.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|229153070|ref|ZP_04281251.1| Cold shock protein cspB [Bacillus cereus m1550] gi|229158481|ref|ZP_04286542.1| Cold shock protein cspB [Bacillus cereus ATCC 4342] gi|229181180|ref|ZP_04308512.1| Cold shock protein cspB [Bacillus cereus 172560W] gi|229187123|ref|ZP_04314271.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1] gi|229193146|ref|ZP_04320101.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|229199032|ref|ZP_04325717.1| Cold shock protein cspB [Bacillus cereus m1293] gi|229601378|ref|YP_002869129.1| cold shock protein CspD [Bacillus anthracis str. A0248] gi|254687666|ref|ZP_05151522.1| cold shock protein CspD [Bacillus anthracis str. CNEVA-9066] gi|254725230|ref|ZP_05187013.1| cold shock protein CspD [Bacillus anthracis str. A1055] gi|254736972|ref|ZP_05194678.1| cold shock protein CspD [Bacillus anthracis str. Western North America USA6153] gi|254742006|ref|ZP_05199693.1| cold shock protein CspD [Bacillus anthracis str. Kruger B] gi|254754395|ref|ZP_05206430.1| cold shock protein CspD [Bacillus anthracis str. Vollum] gi|254757227|ref|ZP_05209254.1| cold shock protein CspD [Bacillus anthracis str. Australia 94] gi|296505326|ref|YP_003667026.1| cold shock protein [Bacillus thuringiensis BMB171] gi|301056373|ref|YP_003794584.1| cold shock protein [Bacillus anthracis CI] gi|49035522|sp|Q816H3|CSPD_BACCR RecName: Full=Cold shock-like protein CspD gi|49035525|sp|Q81K90|CSPD_BACAN RecName: Full=Cold shock-like protein CspD gi|29898486|gb|AAP11759.1| Cold shock protein [Bacillus cereus ATCC 14579] gi|30259599|gb|AAP28787.1| cold shock protein CspD [Bacillus anthracis str. Ames] gi|30408066|gb|AAP30080.1| CspD [Bacillus thuringiensis] gi|42739996|gb|AAS43920.1| cold shock protein CspD [Bacillus cereus ATCC 10987] gi|47505567|gb|AAT34243.1| cold shock protein CspD [Bacillus anthracis str. 'Ames Ancestor'] gi|47555341|gb|EAL13686.1| cold-shock domain family protein-related protein [Bacillus cereus G9241] gi|49181672|gb|AAT57048.1| cold shock protein CspD [Bacillus anthracis str. Sterne] gi|49330353|gb|AAT60999.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974110|gb|AAU15660.1| cold shock protein [Bacillus cereus E33L] gi|57020677|gb|AAW32928.1| cold-shock protein D [Bacillus thuringiensis] gi|118419204|gb|ABK87623.1| cold-shock DNA-binding protein family [Bacillus thuringiensis str. Al Hakam] gi|164714541|gb|EDR20060.1| cold shock protein CspD [Bacillus anthracis str. A0488] gi|167513811|gb|EDR89179.1| cold shock protein CspD [Bacillus anthracis str. A0193] gi|167530616|gb|EDR93318.1| cold shock protein CspD [Bacillus anthracis str. A0442] gi|170129521|gb|EDS98384.1| cold shock protein CspD [Bacillus anthracis str. A0389] gi|170670233|gb|EDT20973.1| cold shock protein CspD [Bacillus anthracis str. A0465] gi|172082930|gb|EDT67992.1| cold shock protein CspD [Bacillus anthracis str. A0174] gi|190561631|gb|EDV15601.1| cold shock protein CspD [Bacillus anthracis Tsiankovskii-I] gi|195994242|gb|EDX58197.1| cold shock protein CspD [Bacillus cereus W] gi|196025380|gb|EDX64050.1| cold shock protein CspD [Bacillus cereus 03BB108] gi|196027726|gb|EDX66340.1| cold shock protein CspD [Bacillus cereus NVH0597-99] gi|206735464|gb|EDZ52632.1| cold shock protein CspD [Bacillus cereus AH1134] gi|206744809|gb|EDZ56215.1| cold shock protein CspD [Bacillus cereus H3081.97] gi|217066836|gb|ACJ81086.1| cold shock protein CspD [Bacillus cereus AH187] gi|218162012|gb|ACK62004.1| cold shock protein CspD [Bacillus cereus B4264] gi|218537043|gb|ACK89441.1| cold shock protein CspD [Bacillus cereus AH820] gi|221242393|gb|ACM15103.1| cold shock protein [Bacillus cereus Q1] gi|225785799|gb|ACO26016.1| cold shock protein CspD [Bacillus cereus 03BB102] gi|227007679|gb|ACP17422.1| cold shock protein CspD [Bacillus anthracis str. CDC 684] gi|228584445|gb|EEK42578.1| Cold shock protein cspB [Bacillus cereus m1293] gi|228590410|gb|EEK48274.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|228596364|gb|EEK54036.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1] gi|228602371|gb|EEK59860.1| Cold shock protein cspB [Bacillus cereus 172560W] gi|228625000|gb|EEK81766.1| Cold shock protein cspB [Bacillus cereus ATCC 4342] gi|228630490|gb|EEK87138.1| Cold shock protein cspB [Bacillus cereus m1550] gi|228636116|gb|EEK92597.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|228641880|gb|EEK98179.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26] gi|228653357|gb|EEL09234.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4] gi|228659077|gb|EEL14729.1| Cold shock protein cspB [Bacillus cereus 95/8201] gi|228671167|gb|EEL26472.1| Cold shock protein cspB [Bacillus cereus Rock1-15] gi|228689460|gb|EEL43274.1| Cold shock protein cspB [Bacillus cereus Rock3-42] gi|228695920|gb|EEL48766.1| Cold shock protein cspB [Bacillus cereus Rock3-44] gi|228701187|gb|EEL53700.1| Cold shock protein cspB [Bacillus cereus Rock4-2] gi|228710793|gb|EEL62764.1| Cold shock protein cspB [Bacillus cereus F65185] gi|228722775|gb|EEL74160.1| Cold shock protein cspB [Bacillus cereus AH676] gi|228771623|gb|EEM20090.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228798576|gb|EEM45563.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804553|gb|EEM51158.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228811105|gb|EEM57447.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823515|gb|EEM69344.1| Cold shock protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829825|gb|EEM75447.1| Cold shock protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228836085|gb|EEM81446.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228842183|gb|EEM87282.1| Cold shock protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265786|gb|ACQ47423.1| cold shock protein CspD [Bacillus anthracis str. A0248] gi|296326378|gb|ADH09306.1| cold shock protein [Bacillus thuringiensis BMB171] gi|300378542|gb|ADK07446.1| cold shock protein [Bacillus cereus biovar anthracis str. CI] gi|324328763|gb|ADY24023.1| cold shock protein CspD [Bacillus thuringiensis serovar finitimus YBT-020] Length = 66 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 MQTGKVKWFNSEKGFGFIEVEG----GDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGN 55 >gi|292670014|ref|ZP_06603440.1| cold shock protein [Selenomonas noxia ATCC 43541] gi|292648315|gb|EFF66287.1| cold shock protein [Selenomonas noxia ATCC 43541] Length = 66 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ DKGYGFI S E GDDVF+H S++ G L+EGQ V +D V+ Sbjct: 3 GKVKWFSADKGYGFI----SREDGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVE 52 >gi|258645332|ref|ZP_05732801.1| putative cold shock protein [Dialister invisus DSM 15470] gi|260402681|gb|EEW96228.1| putative cold shock protein [Dialister invisus DSM 15470] Length = 66 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ DKG+GFI E G DVF+H SA+ + G L+EGQ V +D + + A G Sbjct: 2 KGTVKWFSADKGFGFI----EREEGGDVFVHYSAIQTEGFKTLSEGQKVDFDII-DGARG 56 Query: 64 KYSAENLKLV 73 +A N+K+V Sbjct: 57 PQAA-NVKVV 65 >gi|269954913|ref|YP_003324702.1| cold-shock DNA-binding domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269303594|gb|ACZ29144.1| cold-shock DNA-binding domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 67 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI PE ++ DVF H SA+ + G L EGQ V +D Q Sbjct: 4 GTVKWFNAEKGYGFIAPEDGSQ---DVFAHYSAIQTNGYRTLEEGQRVEFDTAQGPKG-- 58 Query: 65 YSAENLKLV 73 AEN++ + Sbjct: 59 LQAENIRAL 67 >gi|226310435|ref|YP_002770329.1| cold shock protein [Brevibacillus brevis NBRC 100599] gi|226093383|dbj|BAH41825.1| cold shock protein [Brevibacillus brevis NBRC 100599] Length = 66 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MEQGTVKWFNAEKGFGFIEREGK----EDVFVHFSAIQGDGFKSLDEGQKVTFDVEQ 53 >gi|225427973|ref|XP_002277628.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 214 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + GDD+F+H+S++ S G +L EG+ V + V++ +G+ Sbjct: 6 GTVKWFNDQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDGR 61 Query: 65 YSA 67 A Sbjct: 62 TKA 64 >gi|71909004|ref|YP_286591.1| cold-shock DNA-binding protein family protein [Dechloromonas aromatica RCB] gi|71848625|gb|AAZ48121.1| cold-shock DNA-binding protein family [Dechloromonas aromatica RCB] Length = 68 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI+P +E G+D+F H SA+ G L E Q VT+D V N GK Sbjct: 4 GTVKWFNDSKGFGFISP---SEGGEDLFAHFSAIQGNGFKTLAENQKVTFDVV-NGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|146281647|ref|YP_001171800.1| cold shock protein CapB [Pseudomonas stutzeri A1501] gi|145569852|gb|ABP78958.1| cold shock protein CapB [Pseudomonas stutzeri A1501] gi|327479894|gb|AEA83204.1| cold shock protein CapB [Pseudomonas stutzeri DSM 4166] Length = 69 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFITP +SGDD+F+H A+ G +L EGQ V+ +V Sbjct: 7 GTVKWFNDEKGFGFITP----QSGDDLFVHFRAIQGDGFKSLKEGQQVS--FVATRGQKG 60 Query: 65 YSAENLKLV 73 AE ++++ Sbjct: 61 MQAEEVQVI 69 >gi|119386361|ref|YP_917416.1| cold-shock DNA-binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119376956|gb|ABL71720.1| cold-shock DNA-binding protein family [Paracoccus denitrificans PD1222] Length = 80 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P G DVF+H SA+ A + +L +GQ V+++ ++ +G+ Sbjct: 16 GTVKWFNATKGFGFIAP---ANGGKDVFVHISALERANISHLADGQAVSFE-IETGRDGR 71 Query: 65 YSAENLKLV 73 SA +L L Sbjct: 72 QSARDLALA 80 >gi|324998904|ref|ZP_08120016.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia sp. P1] Length = 67 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G++KW+N +KGYGF+ P+G G DVF+H SA+ + G L EGQ V++D Q Sbjct: 3 EGTVKWFNSEKGYGFLAPDG---GGADVFVHYSAIQTQGYKTLDEGQRVSFDIEQG 55 >gi|332686444|ref|YP_004456218.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311] gi|332370453|dbj|BAK21409.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311] Length = 66 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N DKG+GFIT E+G+DVF+H SA+ G L EG VT+D Sbjct: 1 METGTVKWFNSDKGFGFITA----ENGNDVFVHFSAIQGDGFKTLEEGHTVTFD 50 >gi|253574512|ref|ZP_04851853.1| cold-shock DNA-binding domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846217|gb|EES74224.1| cold-shock DNA-binding domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 66 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ V ++ VQ N Sbjct: 4 GTVKWFNAEKGFGFIEVEG----GNDVFVHFSAITGEGFKTLDEGQRVQFNVVQ--GNRG 57 Query: 65 YSAENL 70 AEN+ Sbjct: 58 PQAENV 63 >gi|222153840|ref|YP_002563017.1| cold shock protein [Streptococcus uberis 0140J] gi|222114653|emb|CAR43704.1| cold shock protein [Streptococcus uberis 0140J] Length = 67 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI STE G + F H SA+ + G L EGQ VT+D V D + Sbjct: 3 QGTVKWFNAEKGFGFI----STEEGQEYFAHFSAIQTKGYKTLDEGQQVTFDIV--DGHR 56 Query: 64 KYSAENLKLVP 74 A N+ +P Sbjct: 57 GLQAVNITKLP 67 >gi|251783434|ref|YP_002997739.1| cold shock protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392066|dbj|BAH82525.1| cold shock protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 69 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI STE+G DVF H SA+ + G L EGQ V +D Sbjct: 5 QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVEFD 52 >gi|228992244|ref|ZP_04152177.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] gi|228998299|ref|ZP_04157894.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|229005782|ref|ZP_04163480.1| Cold shock protein cspB [Bacillus mycoides Rock1-4] gi|228755458|gb|EEM04805.1| Cold shock protein cspB [Bacillus mycoides Rock1-4] gi|228761451|gb|EEM10402.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|228767497|gb|EEM16127.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] Length = 66 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNSEKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN 55 >gi|139474525|ref|YP_001129241.1| cold shock protein [Streptococcus pyogenes str. Manfredo] gi|134272772|emb|CAM31047.1| cold shock protein [Streptococcus pyogenes str. Manfredo] Length = 67 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI STE+G D+F H SA+ + G L EGQ V +D Sbjct: 3 QGTVKWFNAEKGFGFI----STENGQDIFAHFSAIQTNGFKTLEEGQKVAFD 50 >gi|238927666|ref|ZP_04659426.1| major cold shock protein [Selenomonas flueggei ATCC 43531] gi|238884382|gb|EEQ48020.1| major cold shock protein [Selenomonas flueggei ATCC 43531] Length = 88 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ DKGYGFI S E GDDVF+H S++ G L+EGQ V +D V+ Sbjct: 25 GKVKWFSADKGYGFI----SREDGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVE 74 >gi|229917667|ref|YP_002886313.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b] gi|229469096|gb|ACQ70868.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b] Length = 66 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G +KW+N +KGYGFI EG GDDVF+H SA+ G L EGQ VT++ Sbjct: 1 MNTGKVKWFNSEKGYGFIEMEG----GDDVFVHFSAIQGDGFKTLEEGQEVTFE 50 >gi|172057694|ref|YP_001814154.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|172057696|ref|YP_001814156.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990215|gb|ACB61137.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum 255-15] gi|171990217|gb|ACB61139.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum 255-15] Length = 66 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G +KW+N +KG+GFI ESGDDVF+H SA+ + G +L EGQ V+++ Sbjct: 1 MEQGKVKWFNAEKGFGFI----ERESGDDVFVHFSAIQTDGFKSLDEGQEVSFE 50 >gi|257790734|ref|YP_003181340.1| cold-shock DNA-binding domain-containing protein [Eggerthella lenta DSM 2243] gi|257474631|gb|ACV54951.1| cold-shock DNA-binding domain protein [Eggerthella lenta DSM 2243] Length = 67 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+NP+KGYGFI S + G+D+F+H S + G L EG V +D V NG Sbjct: 3 EGTVKWFNPEKGYGFI----SQKDGEDLFVHFSEIKMDGFKTLDEGSAVQFD-VTTGQNG 57 Query: 64 KYSAENL 70 K A N+ Sbjct: 58 KLQASNV 64 >gi|187250904|ref|YP_001875386.1| cold-shock DNA-binding domain-containing protein [Elusimicrobium minutum Pei191] gi|186971064|gb|ACC98049.1| Cold-shock DNA-binding domain protein [Elusimicrobium minutum Pei191] Length = 66 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 3/61 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KGYGF+TPE ++ D+F+H + G L+EGQ V +D V++D Sbjct: 3 KGKVKWFNDQKGYGFVTPEDGSK---DLFVHYQEIKGEGFKTLSEGQEVEFDIVESDKGP 59 Query: 64 K 64 K Sbjct: 60 K 60 >gi|328472753|gb|EGF43604.1| hypothetical protein LM220_15640 [Listeria monocytogenes 220] Length = 72 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ V ++ V+ Sbjct: 1 MQTGTVKWFNSEKGFGFIEVEG----GDDVFVHFSAIEGEGFKTLDEGQSVEFEIVE 53 >gi|308071085|ref|YP_003872690.1| Cold shock-like protein cspC [Paenibacillus polymyxa E681] gi|305860364|gb|ADM72152.1| Cold shock-like protein cspC [Paenibacillus polymyxa E681] Length = 65 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI T G DVF+H SA+ + G L EGQ V +D V+ A G Sbjct: 2 QGKVKWFNAEKGYGFI----ETSDGGDVFVHFSAIQTEGFKTLEEGQDVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A KL Sbjct: 57 PQAANVTKL 65 >gi|297537796|ref|YP_003673565.1| cold-shock DNA-binding domain-containing protein [Methylotenera sp. 301] gi|297257143|gb|ADI28988.1| cold-shock DNA-binding domain protein [Methylotenera sp. 301] Length = 67 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + GDD+F H SA+ AG +L EGQ V+++ V + GK Sbjct: 4 GTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVEAGYKSLKEGQRVSFE-VTDGPKGK 59 Query: 65 YSAENLK 71 A N++ Sbjct: 60 -QASNIQ 65 >gi|325983251|ref|YP_004295653.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas sp. AL212] gi|325532770|gb|ADZ27491.1| cold-shock DNA-binding domain protein [Nitrosomonas sp. AL212] Length = 67 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 7/71 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G+D+F H SA++S G +L E Q VT+D + GK Sbjct: 4 GTVKWFNDSKGFGFITPD---DGGEDIFAHFSAISSGGYKSLREAQRVTFD-ITTGPKGK 59 Query: 65 YSAENLKLVPK 75 ++ +VP+ Sbjct: 60 QASN---IVPQ 67 >gi|23004357|ref|ZP_00047730.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 67 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI PE + DVF H SA+ S G L E Q V +D Q + Sbjct: 4 GTVKWFNSEKGYGFIAPE---DGSADVFAHYSAIQSQGFRTLEENQRVEFDVTQGPKGPQ 60 Query: 65 YSAENLKLV 73 AEN++ V Sbjct: 61 --AENIRPV 67 >gi|293375824|ref|ZP_06622094.1| major cold shock protein CspA [Turicibacter sanguinis PC909] gi|325838578|ref|ZP_08166579.1| cold shock protein CspB [Turicibacter sp. HGF1] gi|292645601|gb|EFF63641.1| major cold shock protein CspA [Turicibacter sanguinis PC909] gi|325490804|gb|EGC93107.1| cold shock protein CspB [Turicibacter sp. HGF1] Length = 66 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFIT +G G+DVF H SA+ G L EGQ V+++ V+ + G Sbjct: 4 GTVKWFNAEKGFGFITVDG----GNDVFAHFSAITGEGFKTLEEGQKVSFEIVEGN-RGP 58 Query: 65 YSAENLKL 72 +A +KL Sbjct: 59 QAANIVKL 66 >gi|325962239|ref|YP_004240145.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] gi|323468326|gb|ADX72011.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] Length = 68 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 RG+++W+N +KGYGFIT +G SGDDVF+H SA+ G L EGQ V + Sbjct: 3 RGTVRWFNAEKGYGFITVDG---SGDDVFVHWSAIQGEGYRALDEGQRVELE 51 >gi|310829807|ref|YP_003962164.1| cold-shock protein [Eubacterium limosum KIST612] gi|308741541|gb|ADO39201.1| cold-shock protein [Eubacterium limosum KIST612] Length = 66 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N DKG+GFI S E GDDVF+H S++ G L EG V++D Q Sbjct: 1 MNNGTVKWFNSDKGFGFI----SREEGDDVFVHFSSIMGGGFKTLNEGDKVSFDIEQ 53 >gi|294668449|ref|ZP_06733549.1| hypothetical protein NEIELOOT_00364 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309602|gb|EFE50845.1| hypothetical protein NEIELOOT_00364 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 67 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ E GDD+F H SA+ G L EGQ V++D Sbjct: 4 GTVKWFNDAKGFGFITPD---EGGDDLFAHFSAINMEGFKTLKEGQKVSFD 51 >gi|229544073|ref|ZP_04433132.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] gi|229325212|gb|EEN90888.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] Length = 66 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G +KW+N +KGYGFI EG G DVF+H SA+ G L EGQ V++D Sbjct: 1 MEQGKVKWFNSEKGYGFIEREG----GSDVFVHFSAIQGEGFKTLEEGQSVSFD 50 >gi|325923004|ref|ZP_08184708.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC 19865] gi|325546512|gb|EGD17662.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC 19865] Length = 69 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQ 56 >gi|303257728|ref|ZP_07343740.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47] gi|303257776|ref|ZP_07343787.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47] gi|331000987|ref|ZP_08324623.1| putative cold shock domain protein CspD [Parasutterella excrementihominis YIT 11859] gi|302859458|gb|EFL82538.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47] gi|302859698|gb|EFL82777.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47] gi|329569762|gb|EGG51526.1| putative cold shock domain protein CspD [Parasutterella excrementihominis YIT 11859] Length = 67 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFITP+ + G+D+F H SA+ G L +GQ VT+D + + GK Sbjct: 4 GTVKWFNDAKGYGFITPD---DGGEDLFAHFSAIKMDGFKTLKQGQRVTFDLKEGE-KGK 59 Query: 65 YSAENLK 71 A+N+K Sbjct: 60 -QADNIK 65 >gi|21230743|ref|NP_636660.1| cold shock protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21242090|ref|NP_641672.1| cold shock protein [Xanthomonas axonopodis pv. citri str. 306] gi|66769261|ref|YP_244023.1| cold shock protein [Xanthomonas campestris pv. campestris str. 8004] gi|78046945|ref|YP_363120.1| cold shock protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84623422|ref|YP_450794.1| cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166712821|ref|ZP_02244028.1| cold shock protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188577268|ref|YP_001914197.1| hypothetical protein PXO_01731 [Xanthomonas oryzae pv. oryzae PXO99A] gi|188992412|ref|YP_001904422.1| cold shock protein [Xanthomonas campestris pv. campestris str. B100] gi|289662812|ref|ZP_06484393.1| cold shock protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670308|ref|ZP_06491383.1| cold shock protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325915841|ref|ZP_08178140.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] gi|325926981|ref|ZP_08188256.1| cold-shock DNA-binding protein family [Xanthomonas perforans 91-118] gi|21107498|gb|AAM36208.1| cold shock protein [Xanthomonas axonopodis pv. citri str. 306] gi|21112338|gb|AAM40584.1| cold shock protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574593|gb|AAY50003.1| cold shock protein [Xanthomonas campestris pv. campestris str. 8004] gi|78035375|emb|CAJ23020.1| cold shock protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84367362|dbj|BAE68520.1| cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|167734172|emb|CAP52380.1| cold shock protein [Xanthomonas campestris pv. campestris] gi|188521720|gb|ACD59665.1| conserved domain protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|325537962|gb|EGD09659.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] gi|325542640|gb|EGD14107.1| cold-shock DNA-binding protein family [Xanthomonas perforans 91-118] Length = 68 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+PE + DVF H SA+ S G +L EGQ V+YD Q Sbjct: 4 GTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVSYDVTQ 54 >gi|323467067|gb|ADX70754.1| cold shock-like protein, CspA family [Lactobacillus helveticus H10] Length = 66 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 8/74 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT GS G DVF+H S++ + G +L EGQ V+YD Q Sbjct: 1 MQNGTVKWFNADKGFGFIT--GS--DGTDVFVHFSSIKTDGFKSLEEGQKVSYDVEQ--- 53 Query: 62 NGKYSAENLKLVPK 75 G+ + +VP+ Sbjct: 54 -GRRGPQATNVVPQ 66 >gi|320012608|gb|ADW07458.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] Length = 67 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H SA+ + G L EGQ VT+D Q + Sbjct: 4 GTVKWFNAEKGFGFIQQDGG---GPDVFAHYSAINATGFRELQEGQAVTFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|154250399|ref|YP_001411224.1| cold-shock DNA-binding domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154154335|gb|ABS61567.1| putative cold-shock DNA-binding domain protein [Fervidobacterium nodosum Rt17-B1] Length = 66 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KGYGFIT E+G DVF+H SA+ G L EG V +D +QN G Sbjct: 2 KGTVKWFDSSKGYGFITG----ENGQDVFVHFSAIQMDGFKTLKEGDKVEFD-IQNGQKG 56 Query: 64 KYSAENLKLV 73 +A N+KLV Sbjct: 57 PQAA-NVKLV 65 >gi|150378053|ref|YP_001314648.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150032600|gb|ABR64715.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] Length = 67 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++ DKG+GFITP+ G DVF+H SA+ AG +L +GQ V+Y+ Q+ GK Sbjct: 4 GTVKFFAQDKGFGFITPD---SGGPDVFVHISALGFAG--SLQDGQKVSYELGQDRKTGK 58 Query: 65 YSAENL 70 AEN+ Sbjct: 59 SKAENV 64 >gi|306821247|ref|ZP_07454861.1| cold shock protein CspA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550759|gb|EFM38736.1| cold shock protein CspA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 65 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI EG GDDVF+H SA+ + G L EGQ V ++ + + A G Sbjct: 3 GKVKWFNAEKGFGFIEREG----GDDVFVHFSAIQTDGFKTLDEGQNVEFE-ITDGARGP 57 Query: 65 YSAENLKL 72 +A +KL Sbjct: 58 QAANVVKL 65 >gi|317471073|ref|ZP_07930446.1| cold-shock DNA-binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901441|gb|EFV23382.1| cold-shock DNA-binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 64 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFIT E +G+DVF+H S +A+ G +L +GQ VT++ Q + Sbjct: 1 GTVKWFNSTKGFGFITNE---STGEDVFVHFSGIAAEGFKSLEDGQKVTFETTQGN 53 >gi|295426499|ref|ZP_06819149.1| cold shock protein CspA [Lactobacillus amylolyticus DSM 11664] gi|295063867|gb|EFG54825.1| cold shock protein CspA [Lactobacillus amylolyticus DSM 11664] Length = 66 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N D+G+GFIT GS G DVF+H S++ + G +L EGQ V+YD Q D Sbjct: 1 MQNGTVKWFNADRGFGFIT--GS--DGKDVFVHFSSIKTNGFKSLEEGQKVSYDVEQED 55 >gi|71725903|gb|AAZ39070.1| cold shock protein [Exiguobacterium acetylicum] Length = 67 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 5/63 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI ESGDDVF+H SA+ S G +L EGQ V+++ V+ G Sbjct: 4 GKVKWFNSEKGFGFI----ERESGDDVFVHFSAIQSEGFKSLDEGQEVSFE-VEEGQRGP 58 Query: 65 YSA 67 +A Sbjct: 59 QAA 61 >gi|317488560|ref|ZP_07947105.1| cold-shock' DNA-binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325832026|ref|ZP_08165123.1| cold shock protein CspB [Eggerthella sp. HGA1] gi|316912302|gb|EFV33866.1| cold-shock' DNA-binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486347|gb|EGC88799.1| cold shock protein CspB [Eggerthella sp. HGA1] Length = 67 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+NP+KGYGFI S + G+D+F+H S + G L EG V +D V NG Sbjct: 3 EGTVKWFNPEKGYGFI----SQKDGEDLFVHFSEIKMDGFKTLDEGAAVQFD-VTTGQNG 57 Query: 64 KYSAENL 70 K A N+ Sbjct: 58 KLQASNV 64 >gi|310641348|ref|YP_003946106.1| cold shock-like protein cspb [Paenibacillus polymyxa SC2] gi|309246298|gb|ADO55865.1| Cold shock-like protein cspB [Paenibacillus polymyxa SC2] Length = 65 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI EG G+DVF+H SA+ G L EGQ V ++ + + G Sbjct: 2 KGTVKWFNAEKGYGFIQVEG----GEDVFVHFSAIQGDGFKTLEEGQEVEFEITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|228905155|ref|ZP_04069162.1| hypothetical protein bthur0014_62460 [Bacillus thuringiensis IBL 4222] gi|229077228|ref|ZP_04209922.1| hypothetical protein bcere0024_58750 [Bacillus cereus Rock4-18] gi|228706059|gb|EEL58354.1| hypothetical protein bcere0024_58750 [Bacillus cereus Rock4-18] gi|228854477|gb|EEM99128.1| hypothetical protein bthur0014_62460 [Bacillus thuringiensis IBL 4222] Length = 66 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N DKG+GFI EG G+DVF+H SA+ G +L EGQ VT++ Q Sbjct: 1 MEQGKVKWFNADKGFGFIEREG----GEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQ 53 >gi|266620956|ref|ZP_06113891.1| cold shock protein B [Clostridium hathewayi DSM 13479] gi|288867377|gb|EFC99675.1| cold shock protein B [Clostridium hathewayi DSM 13479] Length = 67 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 41/57 (71%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +++G++KW+N KGYGFIT + E+G++VF+H S + + G +L +GQ VT+D Q Sbjct: 1 MNKGTVKWFNSSKGYGFITND---ETGEEVFVHFSGIMTDGYKSLEDGQKVTFDTTQ 54 >gi|197284696|ref|YP_002150568.1| cold shock protein [Proteus mirabilis HI4320] gi|227357693|ref|ZP_03842042.1| cold shock protein [Proteus mirabilis ATCC 29906] gi|194682183|emb|CAR41839.1| putative cold shock protein [Proteus mirabilis HI4320] gi|227162022|gb|EEI47036.1| cold shock protein [Proteus mirabilis ATCC 29906] Length = 70 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFITP+ ++ DVF+H SA+ S +L EGQ V++ ++N A G Sbjct: 7 GTVKWFNDDKGFGFITPKDGSK---DVFVHFSAIQSDSFKSLKEGQEVSFS-IENGAKGP 62 Query: 65 YSAENLKL 72 +A + L Sbjct: 63 AAANVIGL 70 >gi|326789293|ref|YP_004307114.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] gi|326540057|gb|ADZ81916.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] Length = 65 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI S E GDDVF+H SA+ G +L EGQ V +D + A G Sbjct: 3 GTVKWFNAEKGFGFI----SREDGDDVFVHFSAIQGDGFKSLDEGQRVNFDITKG-ARGA 57 Query: 65 YSAENL 70 AEN+ Sbjct: 58 -QAENV 62 >gi|294011151|ref|YP_003544611.1| cold shock protein CspA [Sphingobium japonicum UT26S] gi|292674481|dbj|BAI95999.1| cold shock protein CspA [Sphingobium japonicum UT26S] Length = 70 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKGYGFI P+ + D F+H SAV GL L E V+YD ++ D GK Sbjct: 5 GTVKFFNADKGYGFIAPD---DGSPDAFVHISAVERGGLATLREKDRVSYD-LEQDKRGK 60 Query: 65 YSAENLK 71 +A N++ Sbjct: 61 MAAVNIQ 67 >gi|291296663|ref|YP_003508061.1| cold-shock DNA-binding domain-containing protein [Meiothermus ruber DSM 1279] gi|290471622|gb|ADD29041.1| cold-shock DNA-binding domain protein [Meiothermus ruber DSM 1279] Length = 68 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFI + ESG DVF+H +A+ G +L EG V ++ ++ Sbjct: 1 MNKGTVKWFNAEKGYGFI----AQESGPDVFVHFTAIQGQGFKSLNEGDRVEFE-IEPGK 55 Query: 62 NGK-YSAENLKLV 73 NGK A+N+KL Sbjct: 56 NGKGPQAKNVKLA 68 >gi|310644316|ref|YP_003949075.1| cold shock-like protein cspc [Paenibacillus polymyxa SC2] gi|309249267|gb|ADO58834.1| Cold shock-like protein cspC [Paenibacillus polymyxa SC2] Length = 65 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI T G DVF+H SA+ + G L EGQ V +D V+ A G Sbjct: 2 QGKVKWFNAEKGYGFI----ETADGGDVFVHFSAIQTEGFKTLEEGQDVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A KL Sbjct: 57 PQAANVTKL 65 >gi|260102778|ref|ZP_05753015.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083418|gb|EEW67538.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 67 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT GS+++ DVF+H SA+ + G +L EGQ V+YD Q Sbjct: 1 MQTGTVKWFNADKGFGFIT--GSSDN-KDVFVHFSAIKTDGFKSLEEGQKVSYDVEQ--- 54 Query: 62 NGKYSAENLKLVPK 75 G + +VP+ Sbjct: 55 -GSRGPQATNVVPQ 67 >gi|226227592|ref|YP_002761698.1| cold shock protein [Gemmatimonas aurantiaca T-27] gi|226090783|dbj|BAH39228.1| cold shock protein [Gemmatimonas aurantiaca T-27] Length = 69 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KG+GFITP ++ D F+H SA+ G +LTEG+ V +D VQ Sbjct: 1 MRTTGTVKWFNDAKGFGFITP---SDGQKDCFVHHSAIQGNGFKSLTEGETVEFDIVQGQ 57 Query: 61 ANGKYSAENL 70 +AEN+ Sbjct: 58 KG--PAAENV 65 >gi|319653292|ref|ZP_08007394.1| cold shock protein [Bacillus sp. 2_A_57_CT2] gi|317395213|gb|EFV75949.1| cold shock protein [Bacillus sp. 2_A_57_CT2] Length = 66 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI EG E G+DVF+H SA+ S G +L EGQ V+++ V+ A G Sbjct: 4 GKVKWFNAEKGFGFI--EG--EDGNDVFVHYSAIQSEGFKSLEEGQEVSFEVVEG-ARGP 58 Query: 65 YSAENLKL 72 +A KL Sbjct: 59 QAANVTKL 66 >gi|297562583|ref|YP_003681557.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847031|gb|ADH69051.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 67 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI+P+G G D F+H SA+ G NL E Q V ++ VQ Sbjct: 3 QGTVKWFNGEKGFGFISPDG---GGPDAFVHYSAIQGTGFRNLEENQRVEFEVVQ 54 >gi|297201136|ref|ZP_06918533.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|197713662|gb|EDY57696.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] Length = 67 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ VT+D Q G+ Sbjct: 4 GTVKWFNAEKGFGFIEQDGG---GADVFAHYSNIATSGFRELQEGQKVTFDVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 57 KGPQAENIVP 66 >gi|190573988|ref|YP_001971833.1| putative cold shock protein [Stenotrophomonas maltophilia K279a] gi|194365403|ref|YP_002028013.1| cold-shock DNA-binding domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|254524777|ref|ZP_05136832.1| putative 'Cold-shock' DNA-binding domain protein [Stenotrophomonas sp. SKA14] gi|190011910|emb|CAQ45531.1| putative cold shock protein [Stenotrophomonas maltophilia K279a] gi|194348207|gb|ACF51330.1| cold-shock DNA-binding domain protein [Stenotrophomonas maltophilia R551-3] gi|219722368|gb|EED40893.1| putative 'Cold-shock' DNA-binding domain protein [Stenotrophomonas sp. SKA14] Length = 69 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP ESG D+F+H A+ G L EGQ VT+ VQ Sbjct: 7 GTVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKTLQEGQKVTFIAVQ 56 >gi|1864167|gb|AAB48629.1| major cold-shock protein homolog CspB [Listeria monocytogenes] Length = 66 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N +KG+GFI EG GDD+F+H SA+ G L EGQ V ++ V+ Sbjct: 1 MQTGTVKWFNSEKGFGFIEVEG----GDDIFVHFSAIEGEGFKTLDEGQSVEFEIVE 53 >gi|304407201|ref|ZP_07388854.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] gi|304343642|gb|EFM09483.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] Length = 66 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI+ EG G+DVF+H SA+ G +L EGQ V ++ VQ + + Sbjct: 4 GTVKWFNAEKGFGFISVEG----GEDVFVHFSAIQGDGYKSLDEGQSVEFNIVQGNRGAQ 59 Query: 65 YSAENL 70 AEN+ Sbjct: 60 --AENV 63 >gi|114776511|ref|ZP_01451556.1| Cold-shock protein, DNA-binding [Mariprofundus ferrooxydans PV-1] gi|114553341|gb|EAU55739.1| Cold-shock protein, DNA-binding [Mariprofundus ferrooxydans PV-1] Length = 67 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + + GDDVF+H S++ G +L EGQLV +D V+N A G Sbjct: 4 GTVKWFNDTKGFGFISQD---DGGDDVFVHFSSIQGDGFKSLAEGQLVEFD-VENGAKG 58 >gi|253681971|ref|ZP_04862768.1| conserved domain protein [Clostridium botulinum D str. 1873] gi|253561683|gb|EES91135.1| conserved domain protein [Clostridium botulinum D str. 1873] Length = 65 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFIT TE G+DVF H S + G L EGQ V++D V+ A G Sbjct: 3 GTVKWFNAEKGFGFIT----TEEGNDVFAHFSQINREGFKTLDEGQNVSFDVVEG-AKGP 57 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 58 -QAENITIL 65 >gi|326789721|ref|YP_004307542.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] gi|326540485|gb|ADZ82344.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] Length = 65 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI EG GDDVF+H +A+ G L EGQ V +D V+ + Sbjct: 3 GKVKWFNAEKGFGFIEREG----GDDVFVHFTAIQGDGFKTLEEGQEVNFDIVEGN 54 >gi|229118682|ref|ZP_04248034.1| hypothetical protein bcere0017_49470 [Bacillus cereus Rock1-3] gi|228664874|gb|EEL20364.1| hypothetical protein bcere0017_49470 [Bacillus cereus Rock1-3] Length = 65 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V +D V + A G Sbjct: 2 QGKVKWFNAEKGFGFI----EREDGEDVFVHFSAIQQDGYKSLEEGQQVKFDIV-DGARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|167754667|ref|ZP_02426794.1| hypothetical protein CLORAM_00170 [Clostridium ramosum DSM 1402] gi|237733540|ref|ZP_04564021.1| cold shock DNA-binding protein [Mollicutes bacterium D7] gi|167705499|gb|EDS20078.1| hypothetical protein CLORAM_00170 [Clostridium ramosum DSM 1402] gi|229383373|gb|EEO33464.1| cold shock DNA-binding protein [Coprobacillus sp. D7] Length = 68 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFIT + E G D+F+H SA+ + G L EGQ+V +D ++D Sbjct: 4 GKVKWFNQEKGFGFITND---EDGKDIFVHFSAINAEGFKTLEEGQVVEFDINESD 56 >gi|15889479|ref|NP_355160.1| cold shock protein [Agrobacterium tumefaciens str. C58] gi|325293560|ref|YP_004279424.1| cold shock protein [Agrobacterium sp. H13-3] gi|15157349|gb|AAK87945.1| cold shock protein [Agrobacterium tumefaciens str. C58] gi|325061413|gb|ADY65104.1| cold shock protein [Agrobacterium sp. H13-3] Length = 71 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI P+ G D+F+H SAV ++GL L+E Q V++D + D Sbjct: 1 MAETGTVKFFNTDKGFGFIKPD---NGGADIFVHISAVQASGLSGLSENQKVSFD-TEPD 56 Query: 61 ANGK-YSAENLKL 72 GK A NL++ Sbjct: 57 RRGKGPKAVNLQI 69 >gi|114561918|ref|YP_749431.1| cold-shock DNA-binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114333211|gb|ABI70593.1| cold-shock DNA-binding protein family [Shewanella frigidimarina NCIMB 400] gi|149675718|dbj|BAF64739.1| cold shock protein [Shewanella livingstonensis] Length = 70 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFITP+ G DVF+H ++ S G L EGQ V++D Q Sbjct: 7 GLVKWFNEDKGFGFITPD---NGGADVFVHFRSITSEGFKTLAEGQKVSFDVEQ 57 >gi|15617086|ref|NP_240299.1| cold shock protein CspE [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|21672738|ref|NP_660805.1| cold shock protein CspE [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|219681838|ref|YP_002468224.1| cold shock protein E [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682393|ref|YP_002468777.1| cold shock protein E [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471542|ref|ZP_05635541.1| cold shock protein CspE [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|54036912|sp|P63237|CSPE_BUCAI RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|54036913|sp|P63238|CSPE_BUCAP RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|25296105|pir||A84987 cold shock-like protein cspE [imported] - Buchnera sp. (strain APS) gi|10039151|dbj|BAB13185.1| cold shock-like protein cspE [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|21623383|gb|AAM68016.1| cold shock like protein CspE [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|219622126|gb|ACL30282.1| cold shock protein E [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624681|gb|ACL30836.1| cold shock protein E [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086213|gb|ADP66295.1| cold shock protein CspE [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086791|gb|ADP66872.1| cold shock protein CspE [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087378|gb|ADP67458.1| cold shock protein CspE [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087874|gb|ADP67953.1| cold shock protein CspE [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 69 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQSVEFE-ITEGAKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVISL 69 >gi|172058938|ref|YP_001815398.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171991459|gb|ACB62381.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum 255-15] Length = 66 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFI EG G+DVF+H SA+ G +L EGQ V ++ + A Sbjct: 1 MNTGKVKWFNAEKGFGFIEVEG----GEDVFVHFSAITGEGFKSLDEGQEVEFE-ITEGA 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGAQAANVVKL 66 >gi|289640776|ref|ZP_06472947.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] gi|289509352|gb|EFD30280.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] Length = 67 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI+P+G + DVF+H SA+A+ G L E Q V +D Q Sbjct: 3 QGTVKWFNAEKGFGFISPDGGS---PDVFVHFSAIATNGYKTLEENQRVEFDTTQGQKGP 59 Query: 64 KYSAENLK 71 + AEN++ Sbjct: 60 Q--AENVR 65 >gi|251810833|ref|ZP_04825306.1| cold shock protein CspA [Staphylococcus epidermidis BCM-HMP0060] gi|293366631|ref|ZP_06613308.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W2(grey)] gi|251805668|gb|EES58325.1| cold shock protein CspA [Staphylococcus epidermidis BCM-HMP0060] gi|291319400|gb|EFE59769.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W2(grey)] Length = 77 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 11 IMKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD 66 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 67 -RGPQAANVVKL 77 >gi|224542054|ref|ZP_03682593.1| hypothetical protein CATMIT_01228 [Catenibacterium mitsuokai DSM 15897] gi|224524987|gb|EEF94092.1| hypothetical protein CATMIT_01228 [Catenibacterium mitsuokai DSM 15897] Length = 67 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+ +KGYGFIT EG ++ D+F+H SA+ + G L EGQ V +D V+ D Sbjct: 3 GKVKWFKAEKGYGFITVEGQSK---DIFVHFSAINADGYKTLEEGQTVEFDVVEGD 55 >gi|205373573|ref|ZP_03226376.1| CspB [Bacillus coahuilensis m4-4] Length = 65 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +KW+N +KG+GFI EG DDVF+H SA+ G +L EGQ V+++ V+ + Sbjct: 3 QGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKSLEEGQEVSFEIVEGN 55 >gi|121631|sp|P27484|GRP2_NICSY RecName: Full=Glycine-rich protein 2 gi|19743|emb|CAA42622.1| nsGRP-2 [Nicotiana sylvestris] Length = 214 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 47/67 (70%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KG+GFITP+ + G+D+F+H+S + S G +L EG+ V ++ V++ +G Sbjct: 10 KGTVKWFSDQKGFGFITPD---DGGEDLFVHQSGIRSEGFRSLAEGETVEFE-VESGGDG 65 Query: 64 KYSAENL 70 + A ++ Sbjct: 66 RTKAVDV 72 >gi|89097883|ref|ZP_01170770.1| cold shock protein [Bacillus sp. NRRL B-14911] gi|89087385|gb|EAR66499.1| cold shock protein [Bacillus sp. NRRL B-14911] Length = 66 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N +KG+GFI T G DVF+H SA+ S G +L EG+ VT++ V+ + Sbjct: 1 MNTGKVKWFNAEKGFGFI----ETSEGQDVFVHFSAIQSEGFKSLEEGEAVTFEIVEGN 55 >gi|110634483|ref|YP_674691.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp. BNC1] gi|110285467|gb|ABG63526.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1] Length = 70 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N KG+GFITP+ + DVF+H SAV ++G+ +L +GQ V++D V+ D Sbjct: 1 MAQTGTVKFFNATKGFGFITPDNGQK---DVFVHISAVEASGMRSLVDGQKVSFD-VEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 RMGK 60 >gi|291613435|ref|YP_003523592.1| cold-shock DNA-binding domain protein [Sideroxydans lithotrophicus ES-1] gi|291583547|gb|ADE11205.1| cold-shock DNA-binding domain protein [Sideroxydans lithotrophicus ES-1] Length = 67 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ +E D+F H SA+ +G +L EGQ VT++ VQ Sbjct: 4 GTVKWFNDAKGFGFITPDDGSE---DLFAHFSAINMSGFKSLKEGQKVTFEVVQ 54 >gi|225848261|ref|YP_002728424.1| hypothetical protein SULAZ_0432 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644220|gb|ACN99270.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 68 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KG+GFIT + ++G D+F+H SA+ G NL EGQ V ++ VQ + G Sbjct: 5 GTVKWFDSKKGFGFITRD---DNGQDIFVHFSAIQGRGFKNLEEGQKVEFEIVQEE-KGP 60 Query: 65 YSAENLKL 72 +A +KL Sbjct: 61 RAANVVKL 68 >gi|184201878|ref|YP_001856085.1| cold shock protein [Kocuria rhizophila DC2201] gi|183582108|dbj|BAG30579.1| cold shock protein [Kocuria rhizophila DC2201] Length = 68 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFI PE + DDVF H S + S G +L EG V ++ Q D Sbjct: 4 GTVKWFNADKGFGFIAPE---DGSDDVFAHFSGINSGGFRSLNEGDKVEFEVQQGDRG-- 58 Query: 65 YSAENLKLV 73 A N+ ++ Sbjct: 59 LQATNISVI 67 >gi|229099617|ref|ZP_04230545.1| hypothetical protein bcere0020_48350 [Bacillus cereus Rock3-29] gi|229105794|ref|ZP_04236423.1| hypothetical protein bcere0019_49200 [Bacillus cereus Rock3-28] gi|228677683|gb|EEL31931.1| hypothetical protein bcere0019_49200 [Bacillus cereus Rock3-28] gi|228683913|gb|EEL37863.1| hypothetical protein bcere0020_48350 [Bacillus cereus Rock3-29] Length = 65 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V +D V + A G Sbjct: 2 QGKVKWFNAEKGFGFI----EREDGEDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|224476532|ref|YP_002634138.1| putative cold shock protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222421139|emb|CAL27953.1| putative cold shock protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 66 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQAVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|150389111|ref|YP_001319160.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948973|gb|ABR47501.1| putative cold-shock DNA-binding domain protein [Alkaliphilus metalliredigens QYMF] Length = 66 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ V ++ V+ N Sbjct: 4 GTVKWFNSEKGFGFIEVEG----GDDVFVHFSAITGDGFKTLEEGQKVEFNVVE--GNRG 57 Query: 65 YSAENL 70 AEN+ Sbjct: 58 PQAENV 63 >gi|320527168|ref|ZP_08028355.1| major cold shock protein CspA [Solobacterium moorei F0204] gi|320132496|gb|EFW25039.1| major cold shock protein CspA [Solobacterium moorei F0204] Length = 66 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KGYGFIT T+ G DVF+H SA+ S G L EG V++D +++ Sbjct: 4 GKVKWFNAEKGYGFIT----TDEGKDVFVHYSAIQSEGFKTLDEGAAVSFDITESN 55 >gi|148652145|ref|YP_001279238.1| cold-shock DNA-binding domain-containing protein [Psychrobacter sp. PRwf-1] gi|148653967|ref|YP_001281060.1| cold-shock DNA-binding domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571229|gb|ABQ93288.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1] gi|148573051|gb|ABQ95110.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1] Length = 69 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFI P E+G DVF H S +AS+G L EGQ V + Q Sbjct: 6 KGTVKWFNEAKGFGFIAP----ETGPDVFAHYSEIASSGFKTLAEGQEVEFTVTQ 56 >gi|22538234|ref|NP_689085.1| CSD family cold shock protein [Streptococcus agalactiae 2603V/R] gi|25012091|ref|NP_736486.1| hypothetical protein gbs2053 [Streptococcus agalactiae NEM316] gi|76788151|ref|YP_330629.1| cold shock protein [Streptococcus agalactiae A909] gi|77405153|ref|ZP_00782252.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae H36B] gi|77408137|ref|ZP_00784883.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae COH1] gi|77410841|ref|ZP_00787198.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae CJB111] gi|77414028|ref|ZP_00790199.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae 515] gi|22535146|gb|AAN00958.1|AE014286_21 cold shock protein, CSD family [Streptococcus agalactiae 2603V/R] gi|24413635|emb|CAD47712.1| Unknown [Streptococcus agalactiae NEM316] gi|76563208|gb|ABA45792.1| cold shock protein [Streptococcus agalactiae A909] gi|77159910|gb|EAO71050.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae 515] gi|77163059|gb|EAO74013.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae CJB111] gi|77173237|gb|EAO76360.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae COH1] gi|77176296|gb|EAO79066.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae H36B] gi|319745994|gb|EFV98276.1| cold shock protein CspA [Streptococcus agalactiae ATCC 13813] Length = 67 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI S+E+G DVF H S + G L EGQ VT+D +Q+ G Sbjct: 3 QGTVKWFNSEKGFGFI----SSETGTDVFAHFSEIKVDGFKTLEEGQKVTFD-IQDGQRG 57 Query: 64 KYSAENLKLV 73 A N+ LV Sbjct: 58 P-QATNINLV 66 >gi|319891930|ref|YP_004148805.1| Cold shock protein CspC [Staphylococcus pseudintermedius HKU10-03] gi|317161626|gb|ADV05169.1| Cold shock protein CspC [Staphylococcus pseudintermedius HKU10-03] gi|323464979|gb|ADX77132.1| cold shock protein B [Staphylococcus pseudintermedius ED99] Length = 66 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E+GDDVF+H SA+ G +L EGQ V +D V+ + Sbjct: 1 MNNGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIVGDGYKSLEEGQNVDFDIVEGE- 55 Query: 62 NGKYSAENLKL 72 G +A +K+ Sbjct: 56 RGAQAANVVKM 66 >gi|288941163|ref|YP_003443403.1| cold-shock DNA-binding domain-containing protein [Allochromatium vinosum DSM 180] gi|288896535|gb|ADC62371.1| cold-shock DNA-binding domain protein [Allochromatium vinosum DSM 180] Length = 70 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFI EG G DVF+H SA+ AG L EGQ VT + Q Sbjct: 8 GTVKWFNDEKGYGFIEREG----GKDVFVHYSAINGAGRKTLAEGQQVTMEVTQ 57 >gi|297583350|ref|YP_003699130.1| cold-shock DNA-binding domain-containing protein [Bacillus selenitireducens MLS10] gi|297141807|gb|ADH98564.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens MLS10] Length = 65 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V +D Q Sbjct: 3 QGTVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLDEGQTVNFDIEQ 53 >gi|302829474|ref|XP_002946304.1| nucleic acid binding protein [Volvox carteri f. nagariensis] gi|121077603|gb|ABM47305.1| nucleic acid binding protein [Volvox carteri f. nagariensis] gi|300269119|gb|EFJ53299.1| nucleic acid binding protein [Volvox carteri f. nagariensis] Length = 242 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 4/65 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 RG++KW+N KG+GFITPEG G+D F+H++ + S G +L EG+ V ++ V+ + Sbjct: 7 QRGTVKWFNATKGFGFITPEG---GGEDFFVHQTNINSDGFRSLREGEAVEFE-VEAGPD 62 Query: 63 GKYSA 67 G+ A Sbjct: 63 GRSKA 67 >gi|239930071|ref|ZP_04687024.1| putative cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291438408|ref|ZP_06577798.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291341303|gb|EFE68259.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] Length = 67 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ VT+D Q G+ Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GADVFAHYSNIATSGFRELQEGQKVTFDVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 57 KGPQAENIVP 66 >gi|192360440|ref|YP_001982658.1| cold shock protein-like protein [Cellvibrio japonicus Ueda107] gi|190686605|gb|ACE84283.1| cold shock protein-related protein [Cellvibrio japonicus Ueda107] Length = 78 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI + ESG DVF+H SA++ +G L EGQ V +D Sbjct: 16 GTVKWFNESKGFGFI----AAESGQDVFVHYSAISGSGFKTLAEGQRVEFD 62 >gi|81429174|ref|YP_396175.1| cold shock protein CspA family protein [Lactobacillus sakei subsp. sakei 23K] gi|78610817|emb|CAI55868.1| Similar to cold shock protein, CspA family [Lactobacillus sakei subsp. sakei 23K] Length = 66 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N +KGYGF+T E G DVF+H SA+ G L EGQ V++D ++D Sbjct: 1 MENGTVKWFNAEKGYGFVT----REDGSDVFVHFSAIQGEGYKTLEEGQSVSFDIEESD 55 >gi|118578996|ref|YP_900246.1| cold-shock DNA-binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501706|gb|ABK98188.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM 2379] Length = 67 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N KG+GFI EG G+DVF+H SA+ G +L+EG VT+D Q Sbjct: 3 KGKVKWFNDTKGFGFIEQEG----GEDVFVHFSAIQGEGFKSLSEGDEVTFDITQ 53 >gi|226310536|ref|YP_002770430.1| cold shock protein [Brevibacillus brevis NBRC 100599] gi|226093484|dbj|BAH41926.1| cold shock protein [Brevibacillus brevis NBRC 100599] Length = 66 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI EG G+DVF+H SA+ G L EGQ V ++ V + Sbjct: 1 MQTGTVKWFNAEKGYGFIAVEG----GNDVFVHFSAIQGDGFKTLEEGQRVEFNVV--EG 54 Query: 62 NGKYSAENL 70 N AEN+ Sbjct: 55 NRGPQAENV 63 >gi|71908706|ref|YP_286293.1| cold-shock DNA-binding protein family protein [Dechloromonas aromatica RCB] gi|71848327|gb|AAZ47823.1| cold-shock DNA-binding protein family [Dechloromonas aromatica RCB] Length = 72 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ +E D+F H SA+ G L EGQ V++D VQ Sbjct: 9 GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMNGFKTLKEGQKVSFDVVQ 59 >gi|217076694|ref|YP_002334410.1| hypothetical protein THA_582 [Thermosipho africanus TCF52B] gi|217036547|gb|ACJ75069.1| conserved domain protein [Thermosipho africanus TCF52B] Length = 65 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 5/64 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KGYGFIT E G+D+F+H SA+ + G L EGQ V +D VQ+ G Sbjct: 2 KGTVKWFDAKKGYGFIT----KEDGEDIFVHWSAIQTDGFKTLKEGQEVEFD-VQDGQKG 56 Query: 64 KYSA 67 +A Sbjct: 57 PQAA 60 >gi|254387116|ref|ZP_05002389.1| cold shock protein [Streptomyces sp. Mg1] gi|194345934|gb|EDX26900.1| cold shock protein [Streptomyces sp. Mg1] Length = 67 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G LTEGQ V++D Q + Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIATQGFRELTEGQRVSFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|16077975|ref|NP_388791.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|221308749|ref|ZP_03590596.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313071|ref|ZP_03594876.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317997|ref|ZP_03599291.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221322271|ref|ZP_03603565.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str. SMY] gi|296332331|ref|ZP_06874792.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673610|ref|YP_003865282.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis subsp. spizizenii str. W23] gi|321314635|ref|YP_004206922.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis BSn5] gi|416834|sp|P32081|CSPB_BACSU RecName: Full=Cold shock protein CspB; AltName: Full=Major cold shock protein gi|114793771|pdb|2ES2|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Cold Shock Protein Bs-Cspb In Complex With Hexathymidine gi|116667125|pdb|2F52|A Chain A, Solution Structure Of Cold Shock Protein Cspb From Bacillus Subtilis In Complex With Heptathymidine gi|157830704|pdb|1CSP|A Chain A, Crystal Structure Of The Bacillus Subtilis Major Cold Shock Protein, Cspb: A Universal Nucleic-Acid Binding Domain gi|157830705|pdb|1CSQ|A Chain A, Crystal Structure Of The Bacillus Subtilis Major Cold Shock Protein, Cspb: A Universal Nucleic-Acid Binding Domain gi|157832148|pdb|1NMF|A Chain A, Major Cold-Shock Protein, Nmr, 20 Structures gi|157832149|pdb|1NMG|A Chain A, Major Cold-Shock Protein, Nmr, Minimized Average Structure gi|297761|emb|CAA42235.1| cold shock protein (CspB) [Bacillus subtilis] gi|1239985|emb|CAA65693.1| cold shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|1336658|gb|AAB01346.1| cold shock protein CspB [Bacillus subtilis subsp. subtilis str. JH642] gi|2633233|emb|CAB12738.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis subsp. subtilis str. 168] gi|291483360|dbj|BAI84435.1| major cold-shock protein [Bacillus subtilis subsp. natto BEST195] gi|296150249|gb|EFG91137.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411854|gb|ADM36973.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis subsp. spizizenii str. W23] gi|320020909|gb|ADV95895.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis BSn5] Length = 67 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 3 EGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN 55 >gi|258517067|ref|YP_003193289.1| cold-shock DNA-binding domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780772|gb|ACV64666.1| cold-shock DNA-binding domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 65 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KGYGFI E G DVF+H SA+ S G L EGQ V +D V+ A G Sbjct: 3 GKVKWFSAEKGYGFI----EREDGGDVFVHFSAIQSEGFKTLEEGQEVEFDIVEG-ARGP 57 Query: 65 YSAENLKL 72 +A +K+ Sbjct: 58 QAANVMKV 65 >gi|163941162|ref|YP_001646046.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229012730|ref|ZP_04169900.1| Cold shock protein cspB [Bacillus mycoides DSM 2048] gi|229018744|ref|ZP_04175594.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|229024986|ref|ZP_04181415.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|229061117|ref|ZP_04198468.1| Cold shock protein cspB [Bacillus cereus AH603] gi|229134360|ref|ZP_04263173.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196] gi|229168275|ref|ZP_04296000.1| Cold shock protein cspB [Bacillus cereus AH621] gi|229174199|ref|ZP_04301734.1| Cold shock protein cspB [Bacillus cereus MM3] gi|163863359|gb|ABY44418.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] gi|228609320|gb|EEK66607.1| Cold shock protein cspB [Bacillus cereus MM3] gi|228615101|gb|EEK72201.1| Cold shock protein cspB [Bacillus cereus AH621] gi|228648981|gb|EEL05003.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196] gi|228718200|gb|EEL69838.1| Cold shock protein cspB [Bacillus cereus AH603] gi|228736321|gb|EEL86887.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|228742550|gb|EEL92700.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|228748565|gb|EEL98420.1| Cold shock protein cspB [Bacillus mycoides DSM 2048] Length = 66 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG G+DVF+H SA+ G +L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNAEKGFGFIEVEG----GEDVFVHFSAIQGDGFKSLEEGQEVTFEVEQGN 55 >gi|322384501|ref|ZP_08058183.1| cold-shock protein molecular chaperone RNA-helicase co-factor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150711|gb|EFX44186.1| cold-shock protein molecular chaperone RNA-helicase co-factor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 76 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ V ++ V + Sbjct: 11 VQTGTVKWFNAEKGFGFIEVEG----GNDVFVHFSAIQGDGFKTLDEGQRVEFNVV--EG 64 Query: 62 NGKYSAENL 70 N AEN+ Sbjct: 65 NRGPQAENV 73 >gi|289435359|ref|YP_003465231.1| cold-shock domain family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|315283050|ref|ZP_07871326.1| putative cold-shock protein [Listeria marthii FSL S4-120] gi|315304007|ref|ZP_07874446.1| putative cold-shock protein [Listeria ivanovii FSL F6-596] gi|289171603|emb|CBH28149.1| cold-shock domain family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313613309|gb|EFR87177.1| putative cold-shock protein [Listeria marthii FSL S4-120] gi|313627624|gb|EFR96318.1| putative cold-shock protein [Listeria ivanovii FSL F6-596] Length = 66 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ V ++ V+ Sbjct: 1 MQTGTVKWFNSEKGFGFIEVEG----GDDVFVHFSAIEGDGFKTLDEGQSVEFEIVE 53 >gi|229551920|ref|ZP_04440645.1| CspA family cold shock transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229314655|gb|EEN80628.1| CspA family cold shock transcriptional regulator [Lactobacillus rhamnosus LMS2-1] Length = 99 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 4/60 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT++ +D Sbjct: 33 LMEHGTVKWFNAEKGYGFIT----REDGSDVFVHFSAIQGEGYKTLEEGQAVTFEVEDSD 88 >gi|89101277|ref|ZP_01174096.1| cold-shock protein [Bacillus sp. NRRL B-14911] gi|89084011|gb|EAR63193.1| cold-shock protein [Bacillus sp. NRRL B-14911] Length = 66 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI EG GDDVF+H +A+ G +L EGQ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGFGFIEVEG----GDDVFVHFTAIQGDGFKSLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|99081568|ref|YP_613722.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TM1040] gi|99037848|gb|ABF64460.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040] Length = 68 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V Y+ + +G+ Sbjct: 4 GTVKWFNTTKGYGFIEPE---EGGKDVFVHISAVERSGLTGLADNQKVGYELTEG-RDGR 59 Query: 65 YSAENLK 71 A +++ Sbjct: 60 QMAGDIR 66 >gi|289549228|ref|YP_003474216.1| cold-shock DNA-binding domain protein [Thermocrinis albus DSM 14484] gi|289182845|gb|ADC90089.1| cold-shock DNA-binding domain protein [Thermocrinis albus DSM 14484] Length = 69 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 MV RG++KW++ +KGYGFIT + ++ DVF+H SA+ G L +GQ V ++ ++ D Sbjct: 1 MVVRGTVKWFSKEKGYGFITRD---DNQGDVFVHFSAIQQRGFKTLEQGQKVEFE-IEED 56 Query: 61 ANGKYSAENLKLV 73 + G A+N++++ Sbjct: 57 SKGP-RAKNVRVI 68 >gi|157691644|ref|YP_001486106.1| major cold shock protein [Bacillus pumilus SAFR-032] gi|157680402|gb|ABV61546.1| major cold shock protein [Bacillus pumilus SAFR-032] Length = 79 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 16 EGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN 68 >gi|71083962|ref|YP_266682.1| cold shock DNA-binding domain-containing protein [Candidatus Pelagibacter ubique HTCC1062] gi|91762969|ref|ZP_01264934.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter ubique HTCC1002] gi|71063075|gb|AAZ22078.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter ubique HTCC1062] gi|91718771|gb|EAS85421.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter ubique HTCC1002] Length = 68 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+NP KG+GFI E + DVF+H SAV AG+ L EGQ +T++ V++ Sbjct: 1 MSLQGKVKWFNPTKGFGFIEREDKEK---DVFVHVSAVRDAGMNGLDEGQALTFE-VEDG 56 Query: 61 ANGKYSAENLK 71 G SA NLK Sbjct: 57 PKGP-SAVNLK 66 >gi|313679366|ref|YP_004057105.1| cold-shock DNA-binding protein family [Oceanithermus profundus DSM 14977] gi|313152081|gb|ADR35932.1| cold-shock DNA-binding protein family [Oceanithermus profundus DSM 14977] Length = 71 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI EG G DVF+H SA+ S+G L EG +V ++ V++ Sbjct: 1 MEKGKVKWFNAEKGYGFIEREG----GSDVFVHFSAINSSGFRTLNEGDVVEFE-VEDGP 55 Query: 62 NGKYSAENLKLV 73 G SA N+ +V Sbjct: 56 KGP-SAANVTVV 66 >gi|297194957|ref|ZP_06912355.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152559|gb|EFH31845.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] Length = 67 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ VT+D Q + Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GADVFAHYSNIATSGFRELQEGQKVTFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|86157415|ref|YP_464200.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|197121458|ref|YP_002133409.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|220916162|ref|YP_002491466.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|85773926|gb|ABC80763.1| cold-shock DNA-binding protein family [Anaeromyxobacter dehalogenans 2CP-C] gi|196171307|gb|ACG72280.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|219954016|gb|ACL64400.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 67 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFIT +G GDDVF H +A+ + G L EGQ V +D + Sbjct: 4 GTVKWFNDAKGFGFITQDG---GGDDVFCHHTAIQADGFRTLAEGQKVEFDVTR 54 >gi|329120534|ref|ZP_08249198.1| cold shock domain protein CspD [Neisseria bacilliformis ATCC BAA-1200] gi|327461273|gb|EGF07605.1| cold shock domain protein CspD [Neisseria bacilliformis ATCC BAA-1200] Length = 67 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ E GDD+F H SA+ G L EGQ V++D Sbjct: 4 GTVKWFNDAKGFGFITPD---EGGDDLFAHFSAINMDGFKTLKEGQKVSFD 51 >gi|326523669|dbj|BAJ93005.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 231 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI+PE +E D+F+H+SA+ S G +L E +V +D + D +G Sbjct: 6 KGTVKWFNVTKGFGFISPEDGSE---DLFVHQSAIKSDGYRSLNENDVVEFDVITGD-DG 61 Query: 64 KYSAENL 70 + A ++ Sbjct: 62 RTKASDV 68 >gi|307313947|ref|ZP_07593562.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|306899221|gb|EFN29859.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 67 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++ DKG+GFITP+ G DVF+H SA+ G +L +GQ V+Y+ Q+ GK Sbjct: 4 GTVKFFAQDKGFGFITPD---SGGPDVFVHISALGFGG--SLQDGQKVSYELGQDRKTGK 58 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 59 SKAENVSIL 67 >gi|228993599|ref|ZP_04153507.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] gi|228999635|ref|ZP_04159212.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|229163862|ref|ZP_04291803.1| Cold shock protein cspB [Bacillus cereus R309803] gi|228619604|gb|EEK76489.1| Cold shock protein cspB [Bacillus cereus R309803] gi|228760161|gb|EEM09130.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|228766190|gb|EEM14836.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] Length = 66 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 MQTGKVKWFNGEKGFGFIEVEG----GDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGN 55 >gi|157364579|ref|YP_001471346.1| cold-shock DNA-binding domain-containing protein [Thermotoga lettingae TMO] gi|157315183|gb|ABV34282.1| putative cold-shock DNA-binding domain protein [Thermotoga lettingae TMO] Length = 67 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW++ KGYGFIT EG G+DVF+H SA+ + G L EGQ V ++ Q + Sbjct: 1 MFKGTVKWFDSKKGYGFITKEG----GEDVFVHFSAIKTDGFKTLREGQEVEFEVQQGN 55 >gi|331695978|ref|YP_004332217.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326950667|gb|AEA24364.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans CB1190] Length = 68 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 7/71 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KGYGF+ P+G G DVF+H SA+ G +L EGQ V++D Q G Sbjct: 3 EGTVKWFNSEKGYGFLAPDG---GGADVFVHYSAIQVNGYKSLDEGQRVSFDIEQ----G 55 Query: 64 KYSAENLKLVP 74 + + K+ P Sbjct: 56 QKGPQATKVTP 66 >gi|332671932|ref|YP_004454940.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340970|gb|AEE47553.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484] Length = 67 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI P+ + G DVF H SA+AS+G +L E Q V +D Q Sbjct: 4 GTVKWFNAEKGFGFIAPD---DGGPDVFAHYSAIASSGYRSLEENQKVQFDVTQ 54 >gi|284989363|ref|YP_003407917.1| cold-shock DNA-binding domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284062608|gb|ADB73546.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus DSM 43160] Length = 66 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N +KG+GFI +G G DVF+H SA+ G +L EGQ VT++ VQ + Sbjct: 3 QGTVKWFNAEKGFGFIAVDG----GQDVFVHYSAIQMDGYKSLDEGQRVTFEVVQGE 55 >gi|16124918|ref|NP_419482.1| cold-shock domain-contain protein [Caulobacter crescentus CB15] gi|221233638|ref|YP_002516074.1| cold shock protein [Caulobacter crescentus NA1000] gi|13421882|gb|AAK22650.1| cold-shock domain family protein [Caulobacter crescentus CB15] gi|220962810|gb|ACL94166.1| cold shock protein [Caulobacter crescentus NA1000] Length = 69 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P ++ D F+H SAV +GL ++ EGQ + Y+ ++ +GK Sbjct: 4 GTVKWFNAAKGFGFIQP---SDGSADAFVHISAVERSGLGSIDEGQKLNYELERDQRSGK 60 Query: 65 YSAENL 70 SA L Sbjct: 61 MSAGQL 66 >gi|226943910|ref|YP_002798983.1| Cold-shock DNA-binding domain-containing protein [Azotobacter vinelandii DJ] gi|226718837|gb|ACO78008.1| Cold-shock DNA-binding domain-containing protein [Azotobacter vinelandii DJ] Length = 69 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H ++ S+G +L EGQ V++ V+ Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHYRSIQSSGFKSLQEGQRVSFVAVK 56 >gi|238020304|ref|ZP_04600730.1| hypothetical protein GCWU000324_00182 [Kingella oralis ATCC 51147] gi|237867284|gb|EEP68290.1| hypothetical protein GCWU000324_00182 [Kingella oralis ATCC 51147] Length = 67 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D V GK Sbjct: 4 GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFD-VTTGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|194014976|ref|ZP_03053593.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|194014002|gb|EDW23567.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 66 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 3 EGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN 55 >gi|167756812|ref|ZP_02428939.1| hypothetical protein CLORAM_02361 [Clostridium ramosum DSM 1402] gi|237734529|ref|ZP_04565010.1| cold shock protein [Mollicutes bacterium D7] gi|167702987|gb|EDS17566.1| hypothetical protein CLORAM_02361 [Clostridium ramosum DSM 1402] gi|229382349|gb|EEO32440.1| cold shock protein [Coprobacillus sp. D7] Length = 66 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 42/59 (71%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N +KG+GFIT + +G D+F+H SA+ +G +L EG V++D V++D Sbjct: 1 MNTGTVKWFNSEKGFGFITKD----TGGDLFVHFSAIQGSGFKSLEEGAKVSFDIVESD 55 >gi|222054676|ref|YP_002537038.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] gi|221563965|gb|ACM19937.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] Length = 66 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N KG+GFI E+G+DVF+H S++ G +L EGQ VT+D +Q Sbjct: 3 KGVVKWFNDAKGFGFI----EQENGEDVFVHFSSIQGDGFKSLAEGQAVTFDVIQ 53 >gi|57866866|ref|YP_188550.1| CSD family cold shock protein [Staphylococcus epidermidis RP62A] gi|242242680|ref|ZP_04797125.1| cold shock protein CspA [Staphylococcus epidermidis W23144] gi|57637524|gb|AAW54312.1| cold shock protein, CSD family [Staphylococcus epidermidis RP62A] gi|242233816|gb|EES36128.1| cold shock protein CspA [Staphylococcus epidermidis W23144] Length = 77 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 11 VMKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD 66 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 67 -RGPQAANVVKL 77 >gi|311067393|ref|YP_003972316.1| CspB protein [Bacillus atrophaeus 1942] gi|310867910|gb|ADP31385.1| CspB [Bacillus atrophaeus 1942] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 3 EGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQTVSFEIVEGN 55 >gi|307546021|ref|YP_003898500.1| cold shock protein CspA [Halomonas elongata DSM 2581] gi|307218045|emb|CBV43315.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas elongata DSM 2581] Length = 68 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI+PE + GDD+F+H S + + G +L +GQ V+++ Q Sbjct: 4 GTVKWFNDTKGYGFISPE---DGGDDLFVHFSEIQAEGFKSLQDGQKVSFEVTQ 54 >gi|311029540|ref|ZP_07707630.1| cold shock protein [Bacillus sp. m3-13] Length = 65 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 5/64 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ A G Sbjct: 3 QGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQEVSFEIVEG-ARG 57 Query: 64 KYSA 67 +A Sbjct: 58 PQAA 61 >gi|76811741|ref|YP_332524.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|83720401|ref|YP_441317.1| cold-shock domain-contain protein [Burkholderia thailandensis E264] gi|76581194|gb|ABA50669.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|83654226|gb|ABC38289.1| cold-shock domain family protein-related protein [Burkholderia thailandensis E264] Length = 81 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ VQ Sbjct: 18 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQ 68 >gi|23099198|ref|NP_692664.1| cold shock protein [Oceanobacillus iheyensis HTE831] gi|22777426|dbj|BAC13699.1| cold shock protein [Oceanobacillus iheyensis HTE831] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KGYGFI E G+DVF+H SA+ G +L EGQ V+++ V+ + Sbjct: 1 MENGVVKWFNAEKGYGFI----QLEEGNDVFVHYSAIQEEGFKSLEEGQEVSFEIVEGE 55 >gi|261343563|ref|ZP_05971208.1| conserved domain protein [Providencia rustigianii DSM 4541] gi|282568712|gb|EFB74247.1| conserved domain protein [Providencia rustigianii DSM 4541] Length = 69 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFITPE ++ DVF+H SA+ S G L EGQ V ++ + Sbjct: 5 KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAITSDGFKTLAEGQRVEFEITE 56 >gi|255263028|ref|ZP_05342370.1| conserved domain protein [Thalassiobium sp. R2A62] gi|255105363|gb|EET48037.1| conserved domain protein [Thalassiobium sp. R2A62] Length = 68 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G+DVF+H SAV +G+ L + Q V ++ ++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPD---DGGNDVFVHISAVERSGMTGLADDQKVEFE-LEEGRDGR 59 Query: 65 YSAENLKLV 73 A NLK V Sbjct: 60 QMAGNLKAV 68 >gi|226939860|ref|YP_002794933.1| CspA [Laribacter hongkongensis HLHK9] gi|226714786|gb|ACO73924.1| CspA [Laribacter hongkongensis HLHK9] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI+P+ E G+D+F H SA+ S G L EGQ V++D Sbjct: 4 GIVKWFNESKGFGFISPD---EGGEDLFAHFSAIQSKGFKTLAEGQRVSFD 51 >gi|225571084|ref|ZP_03780101.1| hypothetical protein CLOHYLEM_07184 [Clostridium hylemonae DSM 15053] gi|225160165|gb|EEG72784.1| hypothetical protein CLOHYLEM_07184 [Clostridium hylemonae DSM 15053] Length = 103 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N KG+GFIT + G DVF+H SA+ S G L EGQ VT+D Sbjct: 35 MNSGTVKWFNSQKGFGFITDD----QGGDVFVHFSAIVSNGFKTLEEGQKVTFD 84 >gi|78486201|ref|YP_392126.1| cold-shock DNA-binding domain-containing protein [Thiomicrospira crunogena XCL-2] gi|78364487|gb|ABB42452.1| cold-shock DNA-binding protein family [Thiomicrospira crunogena XCL-2] Length = 69 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI EG G DVF+H SA+ AG +L EGQ VT + Q Sbjct: 7 GTVKWFNDEKGFGFIEQEG----GKDVFVHFSAINGAGRKSLMEGQSVTMEVTQ 56 >gi|89097885|ref|ZP_01170772.1| cold shock protein [Bacillus sp. NRRL B-14911] gi|89087387|gb|EAR66501.1| cold shock protein [Bacillus sp. NRRL B-14911] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N +KG+GFI EG G+DVF+H SA+ S G +L EGQ V +D Sbjct: 4 GKVKWFNAEKGFGFIEVEG----GEDVFVHFSAIQSEGFKSLDEGQEVEFD 50 >gi|13095918|ref|NP_076827.1| Csp [Lactococcus phage bIL312] gi|15672511|ref|NP_266685.1| cold shock protein D [Lactococcus lactis subsp. lactis Il1403] gi|12723413|gb|AAK04627.1|AE006287_6 cold shock protein D [Lactococcus lactis subsp. lactis Il1403] gi|12831129|gb|AAK08480.1|AF323673_27 Csp [Lactococcus phage bIL312] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N DKG+GFIT +E G D+F H SA+ S G +L EGQ V +D Sbjct: 4 GTVKWFNADKGFGFIT----SEEGKDLFAHFSAIQSDGFKSLDEGQKVEFD 50 >gi|218189944|gb|EEC72371.1| hypothetical protein OsI_05633 [Oryza sativa Indica Group] Length = 131 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 38/52 (73%), Gaps = 3/52 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 HRG++KW+N KG+GFI+P+ +E D+F+H+S++ + G +L EG+ V + Sbjct: 7 HRGTVKWFNDTKGFGFISPDDGSE---DLFVHQSSIKADGFRSLAEGEQVEF 55 >gi|170017900|ref|YP_001728819.1| cold shock protein [Leuconostoc citreum KM20] gi|169804757|gb|ACA83375.1| Cold shock protein [Leuconostoc citreum KM20] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGF+T E+G+DVF H SA+ G L EGQ V ++ V++ Sbjct: 1 MEKGTVKWFNGEKGYGFVTR----ENGEDVFAHFSAIQGDGFKTLEEGQAVEFE-VESSD 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGLQAANIVKL 66 >gi|146309868|ref|YP_001174942.1| cold-shock DNA-binding protein family protein [Enterobacter sp. 638] gi|145316744|gb|ABP58891.1| cold-shock DNA-binding protein family [Enterobacter sp. 638] Length = 70 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP+KG+GFITP+ ++ DVF+H SA+ S+ L EGQ V + ++N A G Sbjct: 7 GLVKWFNPEKGFGFITPQDGSK---DVFVHFSAIQSSDFKTLDEGQKVEFS-IENGAKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 SAVNVIAL 70 >gi|329295571|ref|ZP_08252907.1| cold shock protein CspE [Plautia stali symbiont] Length = 69 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE ++ DVF+H SA+ S G L EGQ V ++ + + A G Sbjct: 5 KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAIQSNGFKTLAEGQRVEFE-ITDGAKG 60 Query: 64 KYSA 67 +A Sbjct: 61 PSAA 64 >gi|325115241|emb|CBZ50796.1| lin-28 homolog B, related [Neospora caninum Liverpool] Length = 133 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V RG+ KW++ KGYGFIT E G D+F+H+S + + G NL EG+ V + +Q Sbjct: 3 VSRGTCKWFDSKKGYGFITA----EDGTDLFVHQSEIRAEGFRNLAEGEQVEF-VIQTGN 57 Query: 62 NGKYSAENL 70 +G+ A N+ Sbjct: 58 DGRKKAVNV 66 >gi|118445055|ref|YP_879083.1| cold shock protein cspB [Clostridium novyi NT] gi|118135511|gb|ABK62555.1| cold shock protein cspB [Clostridium novyi NT] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI+ EG DDVF+H SA+ G L EGQ V ++ V A G Sbjct: 4 GIVKWFNAEKGFGFISVEGE----DDVFVHFSAIQGEGFKTLEEGQKVEFE-VTEGARGP 58 Query: 65 YSAENLKL 72 +A +KL Sbjct: 59 QAANVVKL 66 >gi|78222480|ref|YP_384227.1| cold-shock DNA-binding protein family protein [Geobacter metallireducens GS-15] gi|78193735|gb|ABB31502.1| cold-shock DNA-binding protein family [Geobacter metallireducens GS-15] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +G +KW+N KG+GFI E+G+DVF+H SA+ S G L EG+ VT+D V Sbjct: 3 QGKVKWFNDAKGFGFI----EQENGEDVFVHFSAIQSDGFKTLAEGEAVTFDVV 52 >gi|72383849|ref|YP_293203.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72123192|gb|AAZ65346.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + GDD+F H S V +G +L EGQ V+++ V+ GK Sbjct: 4 GTVKWFNDTKGFGFITPD---DGGDDLFAHFSEVQGSGFKSLQEGQKVSFE-VKQGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|152975126|ref|YP_001374643.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023878|gb|ABS21648.1| putative cold-shock DNA-binding domain protein [Bacillus cytotoxicus NVH 391-98] Length = 65 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG+ DDVF+H +A+ G +L EGQ V++D V+ + G Sbjct: 2 QGKVKWFNNEKGFGFIEIEGA----DDVFVHFTAIQGEGYKSLEEGQEVSFDIVEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|328884303|emb|CCA57542.1| Cold shock protein CspD [Streptomyces venezuelae ATCC 10712] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E QLVT+D Q Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINANGFRSLEENQLVTFDVTQ 54 >gi|302869749|ref|YP_003838386.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029] gi|315503769|ref|YP_004082656.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|302572608|gb|ADL48810.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC 27029] gi|315410388|gb|ADU08505.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFITP+ + G DVF H SA+ ++G +L E Q V ++ Q + Sbjct: 4 GTVKWFNADKGFGFITPD---DGGADVFAHFSAIQTSGYRSLDENQRVEFEVTQGQKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENIR 65 >gi|291295051|ref|YP_003506449.1| cold-shock DNA-binding domain-containing protein [Meiothermus ruber DSM 1279] gi|290470010|gb|ADD27429.1| cold-shock DNA-binding domain protein [Meiothermus ruber DSM 1279] Length = 75 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 5/73 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI E E DVF+H SA+ S G L EG +VT++ ++ Sbjct: 1 MQKGKVKWFNAEKGYGFIQRE---EGEPDVFVHYSAIQSRGFRTLNEGDVVTFE-IEPGK 56 Query: 62 NGK-YSAENLKLV 73 NGK A N+ +V Sbjct: 57 NGKGPQAANVSVV 69 >gi|226507970|ref|NP_001140374.1| hypothetical protein LOC100272427 [Zea mays] gi|194699220|gb|ACF83694.1| unknown [Zea mays] Length = 395 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG++KW+N KG+GFI+PE +E D+F+H+S++ S G +L EG+ V + + D Sbjct: 7 QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD 61 >gi|94968921|ref|YP_590969.1| cold-shock DNA-binding protein family protein [Candidatus Koribacter versatilis Ellin345] gi|94550971|gb|ABF40895.1| cold-shock DNA-binding protein family [Candidatus Koribacter versatilis Ellin345] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 46/70 (65%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI S ++G+DVF+H +A+ + G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFI----SRQNGEDVFVHHTAIQAQGFRSLQEGQAVQFNVVKGPK 56 Query: 62 NGKYSAENLK 71 + AEN++ Sbjct: 57 G--WQAENVQ 64 >gi|307315884|ref|ZP_07595388.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307322018|ref|ZP_07601396.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306892307|gb|EFN23115.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306898474|gb|EFN29157.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 90 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++ DKG+GFITP+ G DVF+H SA+ G +L +GQ V+Y+ Q+ GK Sbjct: 27 GTVKFFAQDKGFGFITPD---SGGPDVFVHISALGFGG--SLQDGQKVSYELGQDRKTGK 81 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 82 SKAENVSIL 90 >gi|238028419|ref|YP_002912650.1| Cold shock transcription regulator protein [Burkholderia glumae BGR1] gi|330818078|ref|YP_004361783.1| Cold shock transcription regulator protein [Burkholderia gladioli BSR3] gi|237877613|gb|ACR29946.1| Cold shock transcription regulator protein [Burkholderia glumae BGR1] gi|327370471|gb|AEA61827.1| Cold shock transcription regulator protein [Burkholderia gladioli BSR3] Length = 73 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ VQ Sbjct: 10 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQ 60 >gi|239827200|ref|YP_002949824.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70] gi|239807493|gb|ACS24558.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G +KW+N +KGYGFI +G G+DVF+H +A+ G L EGQ V +D + D Sbjct: 1 MNKGKVKWFNAEKGYGFIEMDG----GNDVFVHFTAIQGEGFKTLEEGQTVMFDII--DG 54 Query: 62 NGKYSAENLK 71 N A N++ Sbjct: 55 NRGPQAANVQ 64 >gi|167747330|ref|ZP_02419457.1| hypothetical protein ANACAC_02047 [Anaerostipes caccae DSM 14662] gi|167653308|gb|EDR97437.1| hypothetical protein ANACAC_02047 [Anaerostipes caccae DSM 14662] Length = 91 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 41/59 (69%), Gaps = 3/59 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFIT E +G+DVF+H S +A+ G +L +GQ VT++ Q + Sbjct: 25 MNNGTVKWFNSTKGFGFITNE---STGEDVFVHFSGIAAEGFKSLEDGQKVTFETTQGN 80 >gi|163794316|ref|ZP_02188288.1| cold-shock DNA-binding domain protein [alpha proteobacterium BAL199] gi|159180484|gb|EDP65005.1| cold-shock DNA-binding domain protein [alpha proteobacterium BAL199] Length = 68 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI PE ++ DVFLH SAV AGL + EGQ V Y+ +++ +G+ Sbjct: 4 GTVKFFNTTKGFGFIQPEDGSK---DVFLHVSAVERAGLRSPNEGQKVQYE-IESGRDGR 59 Query: 65 YSAENL 70 SA N+ Sbjct: 60 TSAGNI 65 >gi|92112880|ref|YP_572808.1| cold-shock DNA-binding protein family protein [Chromohalobacter salexigens DSM 3043] gi|91795970|gb|ABE58109.1| cold-shock DNA-binding protein family [Chromohalobacter salexigens DSM 3043] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+P E GDD+F+H S + + G +L +GQ V++D Q Sbjct: 4 GTVKWFNDAKGFGFISP---AEGGDDLFVHFSEIQAEGFKSLQDGQEVSFDVTQ 54 >gi|299821570|ref|ZP_07053458.1| cold shock protein CspA [Listeria grayi DSM 20601] gi|299817235|gb|EFI84471.1| cold shock protein CspA [Listeria grayi DSM 20601] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ V ++ V+ Sbjct: 1 MQTGTVKWFNSEKGFGFIEVEG----GDDVFVHFSAIQGDGFKTLDEGQSVEFEIVE 53 >gi|199598334|ref|ZP_03211754.1| Cold shock protein [Lactobacillus rhamnosus HN001] gi|258508067|ref|YP_003170818.1| CspA family cold shock protein_ [Lactobacillus rhamnosus GG] gi|258539340|ref|YP_003173839.1| Cold shock protein [Lactobacillus rhamnosus Lc 705] gi|199590787|gb|EDY98873.1| Cold shock protein [Lactobacillus rhamnosus HN001] gi|257147994|emb|CAR86967.1| Cold shock protein [Lactobacillus rhamnosus GG] gi|257151016|emb|CAR89988.1| Cold shock protein [Lactobacillus rhamnosus Lc 705] gi|259649389|dbj|BAI41551.1| cold shock protein [Lactobacillus rhamnosus GG] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT++ +D Sbjct: 1 MEHGTVKWFNAEKGYGFIT----REDGSDVFVHFSAIQGEGYKTLEEGQAVTFEVEDSD 55 >gi|237746974|ref|ZP_04577454.1| cold-shock DNA-binding family protein [Oxalobacter formigenes HOxBLS] gi|229378325|gb|EEO28416.1| cold-shock DNA-binding family protein [Oxalobacter formigenes HOxBLS] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITPE + G+D+F H SA+ +G L EGQ V ++ Q Sbjct: 4 GTVKWFNDSKGFGFITPE---DGGEDLFAHFSAINMSGFKTLKEGQKVQFEVTQ 54 >gi|299822994|ref|ZP_07054880.1| cold shock protein CspA [Listeria grayi DSM 20601] gi|299816523|gb|EFI83761.1| cold shock protein CspA [Listeria grayi DSM 20601] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N +KG+GFI E+GDDVF+H SA+ G +L EGQ V++D Sbjct: 1 METGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQGDGFKSLDEGQAVSFD 50 >gi|118443638|ref|YP_878429.1| cold shock protein -related protein [Clostridium novyi NT] gi|168186566|ref|ZP_02621201.1| conserved domain protein [Clostridium botulinum C str. Eklund] gi|118134094|gb|ABK61138.1| cold shock protein -related protein [Clostridium novyi NT] gi|169295395|gb|EDS77528.1| conserved domain protein [Clostridium botulinum C str. Eklund] Length = 65 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFIT TE G+DVF H S + G L EGQ V++D V+ A G Sbjct: 3 GTVKWFNAEKGFGFIT----TEEGNDVFAHFSQINKDGFKTLEEGQNVSFDVVEG-AKGP 57 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 58 -QAENISVL 65 >gi|332993980|gb|AEF04035.1| putative Cold shock-like protein [Alteromonas sp. SN2] Length = 70 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N DKG+GF+T +G G DVF+H ++AS G L+EGQ V++ Q Sbjct: 7 GTVKWFNEDKGFGFLTQDG---GGKDVFVHFRSIASDGFKTLSEGQAVSFSVEQ 57 >gi|317129010|ref|YP_004095292.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] gi|315473958|gb|ADU30561.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ V+++ Q Sbjct: 1 MEQGKVKWFNAEKGFGFIEVEG----GDDVFVHFSAINGEGFKTLEEGQDVSFEVEQ 53 >gi|163761575|ref|ZP_02168646.1| cold shock protein [Hoeflea phototrophica DFL-43] gi|162281171|gb|EDQ31471.1| cold shock protein [Hoeflea phototrophica DFL-43] Length = 70 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI P+ G D+F+H SAV ++G+ L E Q V++D + D Sbjct: 1 MAETGTVKFFNVDKGFGFIKPD---NGGADIFVHISAVQASGMTGLEENQKVSFD-TEPD 56 Query: 61 ANGK-YSAENLKL 72 GK A NL+L Sbjct: 57 RRGKGPKAVNLRL 69 >gi|91226280|ref|ZP_01261120.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] gi|91189291|gb|EAS75570.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] Length = 70 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFITP+ G D+F+H ++ S G L+EGQ V+ +V N Sbjct: 7 GSVKWFNESKGFGFITPD---NGGSDLFVHFKSIVSEGFKTLSEGQKVS--FVVEQGNKG 61 Query: 65 YSAENLKLV 73 A+N+ LV Sbjct: 62 PQADNVTLV 70 >gi|239942860|ref|ZP_04694797.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998] gi|239989320|ref|ZP_04709984.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379] gi|291446332|ref|ZP_06585722.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|291349279|gb|EFE76183.1| cold shock protein [Streptomyces roseosporus NRRL 15998] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +AS+G L EGQ V++D Q G+ Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GADVFAHYSNIASSGFRELQEGQKVSFDVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 57 KGPQAENIVP 66 >gi|134098028|ref|YP_001103689.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291007208|ref|ZP_06565181.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|133910651|emb|CAM00764.1| cold-shock DNA-binding domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P+G G DVF+H SA+ G L E Q VT++ Q Sbjct: 3 QGTVKWFNSEKGFGFIAPDG---GGADVFVHYSAIEGNGFRTLEENQTVTFEITQ 54 >gi|116515229|ref|YP_802858.1| cold shock protein CspE [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257083|gb|ABJ90765.1| RNA chaperone, transcription antiterminator [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 69 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITE 56 >gi|317130365|ref|YP_004096647.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] gi|315475313|gb|ADU31916.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ VT++ Sbjct: 1 MEQGKVKWFNSEKGFGFI----EREDGDDVFVHFSAIQGEGFKTLDEGQEVTFE 50 >gi|212633937|ref|YP_002310462.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3] gi|212555421|gb|ACJ27875.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3] Length = 70 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFIT + G DVF+H A+AS G L EGQ V++D Q Sbjct: 7 GIVKWFNEDKGFGFITQD---NGGADVFVHFRAIASDGFKTLAEGQKVSFDLEQ 57 >gi|220931385|ref|YP_002508293.1| putative cold-shock DNA-binding domain protein [Halothermothrix orenii H 168] gi|219992695|gb|ACL69298.1| putative cold-shock DNA-binding domain protein [Halothermothrix orenii H 168] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 4/60 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 MV+ G +KW++ KGYGFI E GDDVF+H SA+ + G +L +G+ V ++ ++ D Sbjct: 1 MVYTGKVKWFDAKKGYGFI----EREDGDDVFVHFSAIQADGFKSLEDGEEVEFEIIEGD 56 >gi|290476206|ref|YP_003469106.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus bovienii SS-2004] gi|289175539|emb|CBJ82342.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus bovienii SS-2004] Length = 69 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEITE 56 >gi|156934364|ref|YP_001438280.1| hypothetical protein ESA_02195 [Cronobacter sakazakii ATCC BAA-894] gi|156532618|gb|ABU77444.1| hypothetical protein ESA_02195 [Cronobacter sakazakii ATCC BAA-894] Length = 70 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 6/65 (9%) Query: 1 MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M +R GS+KW+N DKG+GFI P + DVF+H SA+ S LTEGQ V + V+ Sbjct: 1 MANRMNGSVKWFNADKGFGFIAP---ADGSKDVFVHFSAIQSDNFRTLTEGQQVEFS-VE 56 Query: 59 NDANG 63 N A G Sbjct: 57 NGAKG 61 >gi|326693593|ref|ZP_08230598.1| cold shock protein [Leuconostoc argentinum KCTC 3773] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGF+T E+G+DVF H SA+ G L EGQ V ++ V+ Sbjct: 1 MEKGTVKWFNGEKGYGFVTR----ENGEDVFAHFSAIQGDGFKTLEEGQAVEFE-VETSD 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGLQAANIVKL 66 >gi|294470714|gb|ADE80749.1| cold shock domain protein 2 [Eutrema salsugineum] Length = 201 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 45/65 (69%), Gaps = 4/65 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 RG++KW++ KG+GFITP+ ++GDD+F+H+S++ S G +L + V ++ V+ D N Sbjct: 12 RRGTVKWFDTQKGFGFITPD---DAGDDLFVHQSSIRSDGFRSLAADESVEFE-VEMDNN 67 Query: 63 GKYSA 67 G+ A Sbjct: 68 GRPKA 72 >gi|258650835|ref|YP_003199991.1| cold-shock DNA-binding domain-containing protein [Nakamurella multipartita DSM 44233] gi|258554060|gb|ACV77002.1| cold-shock DNA-binding domain protein [Nakamurella multipartita DSM 44233] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFITP E G DVF+H S + + G +L E Q VTY Q Sbjct: 3 QGTVKWFNAEKGFGFITP---NEGGPDVFVHYSEIQAGGYRSLEENQQVTYTVTQ 54 >gi|53718538|ref|YP_107524.1| cold shock-like protein [Burkholderia pseudomallei K96243] gi|53725849|ref|YP_103842.1| cold-shock domain-contain protein [Burkholderia mallei ATCC 23344] gi|67642114|ref|ZP_00440875.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8 horse 4] gi|115352619|ref|YP_774458.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria AMMD] gi|121599049|ref|YP_991922.1| cold-shock domain-contain protein [Burkholderia mallei SAVP1] gi|124383933|ref|YP_001027037.1| cold-shock domain-contain protein [Burkholderia mallei NCTC 10229] gi|126441710|ref|YP_001058009.1| cold shock protein [Burkholderia pseudomallei 668] gi|126450006|ref|YP_001081686.1| cold-shock domain-contain protein [Burkholderia mallei NCTC 10247] gi|126453970|ref|YP_001065243.1| cold shock protein [Burkholderia pseudomallei 1106a] gi|134281301|ref|ZP_01768010.1| cold-shock domain family protein [Burkholderia pseudomallei 305] gi|134296693|ref|YP_001120428.1| cold-shock DNA-binding protein family protein [Burkholderia vietnamiensis G4] gi|161523955|ref|YP_001578967.1| cold-shock DNA-binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|167003876|ref|ZP_02269655.1| cold-shock DNA-binding domain protein [Burkholderia mallei PRL-20] gi|167561845|ref|ZP_02354761.1| cold-shock domain family protein-related protein [Burkholderia oklahomensis EO147] gi|167569068|ref|ZP_02361942.1| cold-shock domain family protein-related protein [Burkholderia oklahomensis C6786] gi|167580101|ref|ZP_02372975.1| cold-shock domain family protein-related protein [Burkholderia thailandensis TXDOH] gi|167585698|ref|ZP_02378086.1| cold-shock domain family protein-related protein [Burkholderia ubonensis Bu] gi|167618166|ref|ZP_02386797.1| cold-shock domain family protein-related protein [Burkholderia thailandensis Bt4] gi|167718444|ref|ZP_02401680.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei DM98] gi|167737494|ref|ZP_02410268.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei 14] gi|167814612|ref|ZP_02446292.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei 91] gi|167823082|ref|ZP_02454553.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei 9] gi|167835723|ref|ZP_02462606.1| cold-shock domain family protein-related protein [Burkholderia thailandensis MSMB43] gi|167844643|ref|ZP_02470151.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei B7210] gi|167901628|ref|ZP_02488833.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei NCTC 13177] gi|167909877|ref|ZP_02496968.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei 112] gi|167917900|ref|ZP_02504991.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei BCC215] gi|170697706|ref|ZP_02888794.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171319749|ref|ZP_02908837.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|172061480|ref|YP_001809132.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria MC40-6] gi|189351284|ref|YP_001946912.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|217419769|ref|ZP_03451275.1| cold shock family protein [Burkholderia pseudomallei 576] gi|221199249|ref|ZP_03572293.1| cold shock protein [Burkholderia multivorans CGD2M] gi|221205849|ref|ZP_03578864.1| cold shock protein [Burkholderia multivorans CGD2] gi|221211471|ref|ZP_03584450.1| cold shock protein [Burkholderia multivorans CGD1] gi|237811160|ref|YP_002895611.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|242316861|ref|ZP_04815877.1| cold shock family protein [Burkholderia pseudomallei 1106b] gi|254181506|ref|ZP_04888103.1| cold shock protein [Burkholderia pseudomallei 1655] gi|254196847|ref|ZP_04903271.1| cold shock protein [Burkholderia pseudomallei S13] gi|254202546|ref|ZP_04908909.1| cold-shock domain family protein [Burkholderia mallei FMH] gi|254207883|ref|ZP_04914233.1| cold-shock domain family protein [Burkholderia mallei JHU] gi|254262054|ref|ZP_04953108.1| cold shock family protein [Burkholderia pseudomallei 1710a] gi|254296417|ref|ZP_04963874.1| cold shock protein [Burkholderia pseudomallei 406e] gi|254298241|ref|ZP_04965693.1| cold shock protein [Burkholderia pseudomallei 406e] gi|257140008|ref|ZP_05588270.1| cold-shock domain-contain protein [Burkholderia thailandensis E264] gi|52208952|emb|CAH34891.1| cold shock-like protein [Burkholderia pseudomallei K96243] gi|52429272|gb|AAU49865.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344] gi|115282607|gb|ABI88124.1| cold-shock DNA-binding protein family [Burkholderia ambifaria AMMD] gi|121227859|gb|ABM50377.1| cold-shock domain family protein [Burkholderia mallei SAVP1] gi|124291953|gb|ABN01222.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC 10229] gi|126221203|gb|ABN84709.1| cold shock family protein [Burkholderia pseudomallei 668] gi|126227612|gb|ABN91152.1| cold shock family protein [Burkholderia pseudomallei 1106a] gi|126242876|gb|ABO05969.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC 10247] gi|134139850|gb|ABO55593.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis G4] gi|134247607|gb|EBA47692.1| cold-shock domain family protein [Burkholderia pseudomallei 305] gi|147746793|gb|EDK53870.1| cold-shock domain family protein [Burkholderia mallei FMH] gi|147751777|gb|EDK58844.1| cold-shock domain family protein [Burkholderia mallei JHU] gi|157806110|gb|EDO83280.1| cold shock protein [Burkholderia pseudomallei 406e] gi|157808249|gb|EDO85419.1| cold shock protein [Burkholderia pseudomallei 406e] gi|160341384|gb|ABX14470.1| cold-shock DNA-binding domain protein [Burkholderia multivorans ATCC 17616] gi|169653590|gb|EDS86283.1| cold shock protein [Burkholderia pseudomallei S13] gi|170137454|gb|EDT05694.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171095021|gb|EDT40044.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|171993997|gb|ACB64916.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MC40-6] gi|184212044|gb|EDU09087.1| cold shock protein [Burkholderia pseudomallei 1655] gi|189335306|dbj|BAG44376.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|217397073|gb|EEC37089.1| cold shock family protein [Burkholderia pseudomallei 576] gi|221168832|gb|EEE01300.1| cold shock protein [Burkholderia multivorans CGD1] gi|221174687|gb|EEE07119.1| cold shock protein [Burkholderia multivorans CGD2] gi|221180534|gb|EEE12937.1| cold shock protein [Burkholderia multivorans CGD2M] gi|237506154|gb|ACQ98472.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|238523194|gb|EEP86634.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8 horse 4] gi|242140100|gb|EES26502.1| cold shock family protein [Burkholderia pseudomallei 1106b] gi|243060670|gb|EES42856.1| cold-shock DNA-binding domain protein [Burkholderia mallei PRL-20] gi|254220743|gb|EET10127.1| cold shock family protein [Burkholderia pseudomallei 1710a] gi|325526419|gb|EGD04007.1| cold-shock domain-containing protein [Burkholderia sp. TJI49] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ VQ Sbjct: 4 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQ 54 >gi|326510343|dbj|BAJ87388.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 192 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 45/67 (67%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI+PE + DD+F+H+SA+ + G +L E +V +D + D +G Sbjct: 6 KGTVKWFNVTKGFGFISPE---DGSDDLFVHQSAIKADGYRSLNENDVVEFDVITGD-DG 61 Query: 64 KYSAENL 70 + A ++ Sbjct: 62 RTKASDV 68 >gi|319936790|ref|ZP_08011202.1| cold-shock DNA-binding domain-containing protein [Coprobacillus sp. 29_1] gi|319808058|gb|EFW04630.1| cold-shock DNA-binding domain-containing protein [Coprobacillus sp. 29_1] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N +KG+GFIT +G G D+F+H SA+A +G L EGQ V+++ + D Sbjct: 1 MNTGKVKWFNSEKGFGFITVDG----GKDIFVHFSAIAGSGYKTLEEGQNVSFEITEGD 55 >gi|41052630|dbj|BAD08139.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group] gi|41052743|dbj|BAD07599.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group] gi|125580606|gb|EAZ21537.1| hypothetical protein OsJ_05164 [Oryza sativa Japonica Group] gi|187609561|gb|ACD13288.1| cold shock domain protein 1 [Oryza sativa Japonica Group] gi|215767546|dbj|BAG99774.1| unnamed protein product [Oryza sativa Japonica Group] Length = 241 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 38/52 (73%), Gaps = 3/52 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 HRG++KW+N KG+GFI+P+ +E D+F+H+S++ + G +L EG+ V + Sbjct: 7 HRGTVKWFNDTKGFGFISPDDGSE---DLFVHQSSIKADGFRSLAEGEQVEF 55 >gi|326332603|ref|ZP_08198871.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] gi|325949604|gb|EGD41676.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N DKG+GFI +G G+DVF+H SA+ S G +L E Q V +D Q Sbjct: 3 QGTVKWFNADKGFGFIAQDG---GGEDVFVHFSAIQSNGYKSLDENQKVEFDVTQGPKGP 59 Query: 64 KYSAENLKL 72 + AEN+++ Sbjct: 60 Q--AENVRV 66 >gi|220933692|ref|YP_002512591.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995002|gb|ACL71604.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI PE E G DVF+H SA+ + G L EGQ V++ Q Sbjct: 4 GIVKWFNESKGFGFIAPE---EGGADVFVHYSAIQAEGFKTLAEGQRVSFQVQQ 54 >gi|326774945|ref|ZP_08234210.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|326655278|gb|EGE40124.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/51 (52%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI EG G DVF H S +A+ GL L EGQ VT+D Sbjct: 4 GTVKWFNAAKGFGFIEQEGD---GPDVFAHFSNIAAQGLVELIEGQKVTFD 51 >gi|237748947|ref|ZP_04579427.1| cold shock transcription regulator [Oxalobacter formigenes OXCC13] gi|229380309|gb|EEO30400.1| cold shock transcription regulator [Oxalobacter formigenes OXCC13] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ E G+DVF H SA+ S G +L E Q V+++ V GK Sbjct: 4 GTVKWFNDSKGFGFITPD---EGGEDVFAHFSAIKSDGFKSLKENQRVSFE-VTTGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|92114621|ref|YP_574549.1| cold-shock DNA-binding protein family protein [Chromohalobacter salexigens DSM 3043] gi|91797711|gb|ABE59850.1| cold-shock DNA-binding protein family [Chromohalobacter salexigens DSM 3043] Length = 68 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI+P+ + GDD+F H S + + G +L +GQ V+++ Q Sbjct: 4 GTVKWFNDTKGYGFISPD---DGGDDLFAHFSEIQAEGFKSLQDGQKVSFEVTQGKKG-- 58 Query: 65 YSAENLKLV 73 A N+K+V Sbjct: 59 LQASNIKVV 67 >gi|28898663|ref|NP_798268.1| cold shock transcriptional regulator CspA [Vibrio parahaemolyticus RIMD 2210633] gi|260364904|ref|ZP_05777475.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus K5030] gi|260879696|ref|ZP_05892051.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AN-5034] gi|260898831|ref|ZP_05907272.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus Peru-466] gi|28806881|dbj|BAC60152.1| cold shock transcriptional regulator CspA [Vibrio parahaemolyticus RIMD 2210633] gi|308086661|gb|EFO36356.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus Peru-466] gi|308093445|gb|EFO43140.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AN-5034] gi|308111634|gb|EFO49174.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus K5030] gi|328472899|gb|EGF43747.1| cold shock transcriptional regulator CspA [Vibrio parahaemolyticus 10329] Length = 70 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 GS+KW+N KG+GFI+PE G+D+F+H ++ S G L+EGQ V+Y Sbjct: 7 GSVKWFNETKGFGFISPE---NGGEDLFVHFQSIVSTGFKTLSEGQKVSY 53 >gi|89073823|ref|ZP_01160330.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|89050358|gb|EAR55859.1| putative Cold shock-like protein [Photobacterium sp. SKA34] Length = 70 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GF+T + G DVF+H A+AS G LTEGQ V++D Q Sbjct: 7 GLVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQ 57 >gi|261251826|ref|ZP_05944400.1| cold shock protein CspA [Vibrio orientalis CIP 102891] gi|260938699|gb|EEX94687.1| cold shock protein CspA [Vibrio orientalis CIP 102891] Length = 70 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFITPE G DVF+H A+ S G L EGQ V+++ Q G+ Sbjct: 7 GIVKWFNEEKGFGFITPE---NGGADVFVHFRAITSDGFKTLKEGQQVSFEVEQ----GQ 59 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 60 KGPQAANVVP 69 >gi|229031192|ref|ZP_04187201.1| Cold shock protein cspB [Bacillus cereus AH1271] gi|229075433|ref|ZP_04208422.1| Cold shock protein cspB [Bacillus cereus Rock4-18] gi|229097982|ref|ZP_04228932.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|229104067|ref|ZP_04234742.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|229117001|ref|ZP_04246383.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|228666405|gb|EEL21865.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|228679347|gb|EEL33549.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|228685419|gb|EEL39347.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|228707682|gb|EEL59866.1| Cold shock protein cspB [Bacillus cereus Rock4-18] gi|228730119|gb|EEL81090.1| Cold shock protein cspB [Bacillus cereus AH1271] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNSEKGFGFIEVEG----GEDVFVHFSAIQGDGFKTLEEGQEVTFEVEQGN 55 >gi|29831319|ref|NP_825953.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|307324568|ref|ZP_07603775.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|29608434|dbj|BAC72488.1| putative cold shock protein [Streptomyces avermitilis MA-4680] gi|306889812|gb|EFN20791.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q G+ Sbjct: 4 GTVKWFNAEKGFGFIEQDGG---GADVFAHYSNIATQGFRELQEGQKVTFDVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 57 KGPQAENIVP 66 >gi|116491359|ref|YP_810903.1| cold-shock DNA-binding protein family protein [Oenococcus oeni PSU-1] gi|118586607|ref|ZP_01544047.1| cold-shock protein E [Oenococcus oeni ATCC BAA-1163] gi|290890924|ref|ZP_06553988.1| hypothetical protein AWRIB429_1378 [Oenococcus oeni AWRIB429] gi|116092084|gb|ABJ57238.1| cold-shock DNA-binding protein family [Oenococcus oeni PSU-1] gi|118432922|gb|EAV39648.1| cold-shock protein E [Oenococcus oeni ATCC BAA-1163] gi|290479323|gb|EFD87983.1| hypothetical protein AWRIB429_1378 [Oenococcus oeni AWRIB429] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N DKGYGFIT ++G DVF+H SA+ + G +L EGQ VT++ Sbjct: 1 METGTVKWFNADKGYGFIT----RDNGGDVFVHFSAIQTDGFKSLDEGQKVTFE 50 >gi|17549274|ref|NP_522614.1| cold shock-like transcription regulator protein [Ralstonia solanacearum GMI1000] gi|83749154|ref|ZP_00946157.1| Cold shock protein [Ralstonia solanacearum UW551] gi|300694069|ref|YP_003750042.1| cold shock-like protein [Ralstonia solanacearum PSI07] gi|17431526|emb|CAD18204.1| probable cold shock activator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|83724150|gb|EAP71325.1| Cold shock protein [Ralstonia solanacearum UW551] gi|299069468|emb|CBJ40735.1| Cold shock protein [Ralstonia solanacearum CMR15] gi|299076106|emb|CBJ35417.1| Cold shock-like protein [Ralstonia solanacearum PSI07] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ Q Sbjct: 4 GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQ 54 >gi|333027864|ref|ZP_08455928.1| putative cold shock protein [Streptomyces sp. Tu6071] gi|332747716|gb|EGJ78157.1| putative cold shock protein [Streptomyces sp. Tu6071] Length = 86 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +AS+G L EGQ V +D Q Sbjct: 22 GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIASSGFRELIEGQKVEFDVTQGQKG-- 76 Query: 65 YSAENL 70 AEN+ Sbjct: 77 LQAENI 82 >gi|310778967|ref|YP_003967300.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] gi|309748290|gb|ADO82952.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFIT +E G+D+F+H S + G L EG+ VT+D V+ Sbjct: 3 KGTVKWFNSEKGFGFIT----SEEGNDLFVHFSEINKPGFKTLEEGEEVTFDVVE 53 >gi|238919337|ref|YP_002932852.1| hypothetical protein NT01EI_1429 [Edwardsiella ictaluri 93-146] gi|269138654|ref|YP_003295355.1| major cold shock protein [Edwardsiella tarda EIB202] gi|238868906|gb|ACR68617.1| conserved domain protein [Edwardsiella ictaluri 93-146] gi|267984315|gb|ACY84144.1| major cold shock protein [Edwardsiella tarda EIB202] gi|304558665|gb|ADM41329.1| Cold shock protein CspA [Edwardsiella tarda FL6-60] Length = 71 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFITP+ G D+F+H SA+ S G +L EGQ V ++ VQ A Sbjct: 7 GLVKWFNADKGFGFITPD---NGGSDIFVHFSAIQSNGYKSLDEGQKVAFE-VQTGAAKG 62 Query: 65 YSAENL 70 SA N+ Sbjct: 63 PSAINV 68 >gi|302552922|ref|ZP_07305264.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] gi|302470540|gb|EFL33633.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ V++D Q Sbjct: 4 GTVKWFNAEKGFGFIEQEG---GGPDVFAHYSNIAAQGFRELLEGQKVSFDVAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|197123689|ref|YP_002135640.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|196173538|gb|ACG74511.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFIT +G G+DVF H +A+ S G +L EGQ V +D + Sbjct: 4 GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQSEGFRSLAEGQKVEFDVTK 54 >gi|152967548|ref|YP_001363332.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] gi|151362065|gb|ABS05068.1| putative cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P T+ G DVF+H SA+A G NL E V Y+ Q Sbjct: 3 QGTVKWFNGEKGFGFIAP---TDGGPDVFVHYSAIAGNGFRNLEENDQVEYEVTQ 54 >gi|190575103|ref|YP_001972948.1| putative cold shock protein [Stenotrophomonas maltophilia K279a] gi|190013025|emb|CAQ46657.1| putative cold shock protein [Stenotrophomonas maltophilia K279a] Length = 69 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI S E+G+DVF+H A+ + G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDAKGFGFI----SRENGEDVFVHFRAIQTQGFKSLKEGQKVTFTVVQ 56 >gi|134300911|ref|YP_001114407.1| cold-shock DNA-binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134053611|gb|ABO51582.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens MI-1] Length = 65 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KGYGFI E G DVF+H SA+ G +L EGQ V +D V+ Sbjct: 3 GKVKWFNAEKGYGFI----EREEGGDVFVHFSAIQEEGFKSLAEGQEVEFDIVE 52 >gi|16262844|ref|NP_435637.1| CspA6 cold shock protein transcriptional regulator [Sinorhizobium meliloti 1021] gi|307322440|ref|ZP_07601795.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|307322706|ref|ZP_07602031.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|14523481|gb|AAK65049.1| CspA6 cold shock protein [Sinorhizobium meliloti 1021] gi|306891645|gb|EFN22506.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306891926|gb|EFN22757.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++ DKG+GFITP+ G DVF+H SA+ G +L +GQ V+Y+ Q+ GK Sbjct: 4 GTVKFFAQDKGFGFITPD---NGGPDVFVHISALGFGG--SLQDGQKVSYELGQDRKTGK 58 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 59 SKAENVSIL 67 >gi|72383861|ref|YP_293215.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72123204|gb|AAZ65358.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + GDD+F H S V +G +L EGQ V+++ V+ GK Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGDDLFAHFSEVQGSGFKSLQEGQKVSFE-VKQGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|284045400|ref|YP_003395740.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] gi|283949621|gb|ADB52365.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N DKG+GFITP+ ++ D+F+H SA+ G +L EG V+YD Q Sbjct: 4 GTVKWFNDDKGFGFITPDDQSK---DLFVHHSAITGDGFKSLAEGAKVSYDAEQ 54 >gi|168022724|ref|XP_001763889.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684894|gb|EDQ71293.1| predicted protein [Physcomitrella patens subsp. patens] Length = 198 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ + GDD+F+H++++ + G +L EG++V + V++ +G+ Sbjct: 16 GKVKWFNSSKGFGFITPD---KGGDDLFVHQTSIHAEGFRSLREGEVVEFQ-VESSEDGR 71 Query: 65 YSA 67 A Sbjct: 72 TKA 74 >gi|301058337|ref|ZP_07199370.1| cold-shock DNA-binding domain protein [delta proteobacterium NaphS2] gi|300447573|gb|EFK11305.1| cold-shock DNA-binding domain protein [delta proteobacterium NaphS2] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E G DVF+H SA+ +AG +L EG+ VT+D Q Sbjct: 4 GTVKWFNDQKGFGFI----EQEDGPDVFVHHSAINAAGFKSLNEGERVTFDIEQ 53 >gi|302543455|ref|ZP_07295797.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302461073|gb|EFL24166.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q VT+D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINASGFRSLEENQAVTFDVTQGPKGPQ 60 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 61 --AENVSAV 67 >gi|295837165|ref|ZP_06824098.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|302521137|ref|ZP_07273479.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] gi|318058035|ref|ZP_07976758.1| cold shock protein [Streptomyces sp. SA3_actG] gi|318079486|ref|ZP_07986818.1| cold shock protein [Streptomyces sp. SA3_actF] gi|295826381|gb|EFG64808.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|302430032|gb|EFL01848.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q VT+D Q Sbjct: 4 GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVTFDVTQ 54 >gi|229086124|ref|ZP_04218344.1| Cold shock protein cspB [Bacillus cereus Rock3-44] gi|228697183|gb|EEL49948.1| Cold shock protein cspB [Bacillus cereus Rock3-44] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNSEKGFGFIEVEG----GEDVFVHFSAIQGDGFKTLEEGQEVTFEVEQGN 55 >gi|297582825|ref|YP_003698605.1| cold-shock DNA-binding domain-containing protein [Bacillus selenitireducens MLS10] gi|297141282|gb|ADH98039.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens MLS10] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E GDDVF+H SA+ + G L EGQ V ++ V+ + G Sbjct: 4 GKVKWFNAEKGFGFI----EREDGDDVFVHFSAIQAEGFKTLDEGQDVEFEIVEGN-RGP 58 Query: 65 YSAENLKL 72 +A +KL Sbjct: 59 QAANVVKL 66 >gi|146283383|ref|YP_001173536.1| cold acclimation protein B [Pseudomonas stutzeri A1501] gi|146308538|ref|YP_001189003.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina ymp] gi|145571588|gb|ABP80694.1| cold acclimation protein B [Pseudomonas stutzeri A1501] gi|145576739|gb|ABP86271.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp] gi|327481776|gb|AEA85086.1| cold acclimation protein B [Pseudomonas stutzeri DSM 4166] Length = 70 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 4/56 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ V++ VQ Sbjct: 5 QNGTVKWFNDEKGFGFITP----ESGPDLFVHFRAIEGNGFKSLKEGQKVSFIAVQ 56 >gi|320109064|ref|YP_004184654.1| cold-shock DNA-binding domain-containing protein [Terriglobus saanensis SP1PR4] gi|319927585|gb|ADV84660.1| cold-shock DNA-binding domain protein [Terriglobus saanensis SP1PR4] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GF+ S ++G+DVF+H +A+ + G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFL----SRDNGEDVFVHHTAIQAQGFRSLQEGQRVEFNVVKGPK 56 Query: 62 NGKYSAENLKLVP 74 + AEN++ V Sbjct: 57 G--WQAENVRAVA 67 >gi|294102753|ref|YP_003554611.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] gi|293617733|gb|ADE57887.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFIT ++ G DVF+H S++ G L EGQ VT++ V A Sbjct: 1 MSQGTVKWFNATKGYGFIT----SDEGKDVFVHFSSIQGDGFKTLDEGQRVTFE-VTAGA 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 KGDQAANVVKL 66 >gi|227535413|ref|ZP_03965462.1| CspA family cold shock transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187009|gb|EEI67076.1| CspA family cold shock transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 99 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 4/60 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT++ +D Sbjct: 33 LMEHGTVKWFNAEKGYGFIT----REDGSDVFVHFSAIQGDGYKTLEEGQAVTFEVEDSD 88 >gi|103487825|ref|YP_617386.1| cold-shock DNA-binding domain-containing protein [Sphingopyxis alaskensis RB2256] gi|98977902|gb|ABF54053.1| cold-shock DNA-binding protein family [Sphingopyxis alaskensis RB2256] Length = 249 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++NP KG+GF+ + + G+DVF+H SAV AGL L GQ + + V+ NG Sbjct: 85 QGTVKFFNPSKGFGFVARD---DGGEDVFVHISAVEQAGLQGLASGQPLAFTLVER--NG 139 Query: 64 KYSAENLKL 72 K SA +LK+ Sbjct: 140 KVSAIDLKI 148 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AG+ L EG V +D ++ D GK Sbjct: 183 GTVKFFNTTKGFGFIARD---DGQADAFVHISAVQRAGMAGLEEGDRVAFD-IEVDDRGK 238 Query: 65 YSAENLK 71 ++A NL+ Sbjct: 239 FAAVNLQ 245 >gi|332670111|ref|YP_004453119.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339149|gb|AEE45732.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N +KGYGFI +G G DVF+H SA+ + G +L EGQ V ++ Q D Sbjct: 3 QGAVKWFNAEKGYGFIAQDG---GGADVFVHYSAIDTQGYRSLDEGQRVEFEITQGD 56 >gi|302543183|ref|ZP_07295525.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302460801|gb|EFL23894.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q G+ Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GADVFAHYSNIATQGFRELQEGQKVTFDVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 57 KGPQAENIVP 66 >gi|295839487|ref|ZP_06826420.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|302518459|ref|ZP_07270801.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] gi|318062555|ref|ZP_07981276.1| cold shock protein [Streptomyces sp. SA3_actG] gi|318078420|ref|ZP_07985752.1| cold shock protein [Streptomyces sp. SA3_actF] gi|295827504|gb|EFG65433.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|302427354|gb|EFK99169.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] Length = 68 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +AS+G L EGQ V +D Q Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIASSGFRELIEGQKVEFDVTQGQKG-- 58 Query: 65 YSAENL 70 AEN+ Sbjct: 59 LQAENI 64 >gi|153006954|ref|YP_001381279.1| cold-shock DNA-binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152030527|gb|ABS28295.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFIT +G G+DVF H +A+ + G L EGQ V +D VQ G Sbjct: 4 GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQTQGFRTLAEGQKVEFD-VQRGPKGL 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|90581456|ref|ZP_01237250.1| putative Cold shock-like protein [Vibrio angustum S14] gi|90437317|gb|EAS62514.1| putative Cold shock-like protein [Vibrio angustum S14] Length = 70 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GF+T + G DVF+H A+AS G LTEGQ V++D Q Sbjct: 7 GLVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQ 57 >gi|87201154|ref|YP_498411.1| cold-shock DNA-binding protein family protein [Novosphingobium aromaticivorans DSM 12444] gi|87136835|gb|ABD27577.1| cold-shock DNA-binding protein family [Novosphingobium aromaticivorans DSM 12444] Length = 267 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K++N KG+GFI E + G+DVF+H SAV AGL L EGQ + ++ V D G Sbjct: 113 KGVVKFFNGQKGFGFIQRE---DGGEDVFVHISAVERAGLEGLAEGQQLEFNLV--DRGG 167 Query: 64 KYSAENLKLV 73 K SA +L++V Sbjct: 168 KISAADLQVV 177 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 6/71 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFIT + + D F+H SAV +GL L EG + +D ++ D GK Sbjct: 201 GTVKFFNAMKGFGFITRD---DGQPDAFVHISAVERSGLRELNEGDKLEFD-LEVDRRGK 256 Query: 65 YSAENLKLVPK 75 YSA N LVP+ Sbjct: 257 YSAVN--LVPR 265 >gi|309777854|ref|ZP_07672800.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914415|gb|EFP60209.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 65 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +KW+N +KGYGFI E G D+F+H S + G +L EGQ VT+D V +D Sbjct: 2 KGKVKWFNAEKGYGFINGE----DGKDIFVHYSHIQQEGYKSLEEGQEVTFDAVDSD 54 >gi|254380611|ref|ZP_04995977.1| cold-shock domain containing protein [Streptomyces sp. Mg1] gi|194339522|gb|EDX20488.1| cold-shock domain containing protein [Streptomyces sp. Mg1] Length = 67 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDGG---GADVFAHYSNIAAQGFRELNEGQKVTFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|251796131|ref|YP_003010862.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] gi|247543757|gb|ACT00776.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] Length = 65 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI S E+G+DVF+H S++ G L EGQ V ++ Q + Sbjct: 2 KGTVKWFNAEKGYGFI----SVENGEDVFVHYSSIQGDGFKALEEGQSVEFEITQGNRGA 57 Query: 64 KYS 66 + S Sbjct: 58 QAS 60 >gi|172057695|ref|YP_001814155.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|172057697|ref|YP_001814157.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990216|gb|ACB61138.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum 255-15] gi|171990218|gb|ACB61140.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum 255-15] Length = 66 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 39/54 (72%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +KG+GFI E+GDDVF+H SA+ + G +L EGQ V+++ Sbjct: 1 MEQGTVKWFNAEKGFGFI----ERENGDDVFVHFSAIQTDGFKSLDEGQEVSFE 50 >gi|332798799|ref|YP_004460298.1| cold-shock DNA-binding domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696534|gb|AEE90991.1| cold-shock DNA-binding domain protein [Tepidanaerobacter sp. Re1] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI EG DVF+H SA+ G L EG V +D V+ Sbjct: 2 QGKVKWFNQEKGYGFIEVEGDK----DVFVHYSAIQQEGFKTLKEGDSVEFDVVEGQKGP 57 Query: 64 KYSAENLKLV 73 + AEN+ LV Sbjct: 58 Q--AENVTLV 65 >gi|229032524|ref|ZP_04188490.1| Cold shock protein cspB [Bacillus cereus AH1271] gi|229099341|ref|ZP_04230272.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|229105500|ref|ZP_04236141.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|229118352|ref|ZP_04247708.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|228665182|gb|EEL20668.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|228677925|gb|EEL32161.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|228684159|gb|EEL38106.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|228728782|gb|EEL79792.1| Cold shock protein cspB [Bacillus cereus AH1271] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 MQTGKVKWFNGEKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVSFEIVEGN 55 >gi|330504702|ref|YP_004381571.1| cold-shock domain-containing protein [Pseudomonas mendocina NK-01] gi|328918988|gb|AEB59819.1| cold-shock domain-containing protein [Pseudomonas mendocina NK-01] Length = 70 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 4/56 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ V++ VQ Sbjct: 5 QNGTVKWFNDEKGFGFITP----ESGPDLFVHFRAIEGNGFKSLKEGQKVSFVAVQ 56 >gi|323488057|ref|ZP_08093310.1| cold shock protein [Planococcus donghaensis MPA1U2] gi|323398325|gb|EGA91118.1| cold shock protein [Planococcus donghaensis MPA1U2] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N +KG+GFI EG GDDVF+H SA+ G L EGQ V ++ Sbjct: 1 MQEGTVKWFNSEKGFGFIEVEG----GDDVFVHFSAIQGEGFKTLDEGQRVEFE 50 >gi|27468004|ref|NP_764641.1| major cold shock protein CspA [Staphylococcus epidermidis ATCC 12228] gi|73662658|ref|YP_301439.1| cold shock protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|228476062|ref|ZP_04060770.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|282876159|ref|ZP_06285026.1| major cold shock protein CspA [Staphylococcus epidermidis SK135] gi|314936453|ref|ZP_07843800.1| conserved domain protein [Staphylococcus hominis subsp. hominis C80] gi|81842847|sp|Q8CP90|CSPA_STAES RecName: Full=Cold shock protein CspA gi|118572257|sp|Q5HPE0|CSPA_STAEQ RecName: Full=Cold shock protein CspA gi|118572259|sp|Q49XK3|CSPA_STAS1 RecName: Full=Cold shock protein CspA gi|27315549|gb|AAO04683.1|AE016747_180 major cold shock protein CspA [Staphylococcus epidermidis ATCC 12228] gi|72495173|dbj|BAE18494.1| cold shock protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|228269885|gb|EEK11365.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|281295184|gb|EFA87711.1| major cold shock protein CspA [Staphylococcus epidermidis SK135] gi|313655072|gb|EFS18817.1| conserved domain protein [Staphylococcus hominis subsp. hominis C80] gi|319400756|gb|EFV88975.1| cold shock protein cspB [Staphylococcus epidermidis FRI909] gi|329729371|gb|EGG65777.1| major cold shock protein CspA [Staphylococcus epidermidis VCU144] gi|329732908|gb|EGG69253.1| major cold shock protein CspA [Staphylococcus epidermidis VCU028] gi|329735220|gb|EGG71512.1| major cold shock protein CspA [Staphylococcus epidermidis VCU045] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|154247142|ref|YP_001418100.1| cold-shock DNA-binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154161227|gb|ABS68443.1| putative cold-shock DNA-binding domain protein [Xanthobacter autotrophicus Py2] Length = 68 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + E G DVF+H S V +GL+ L +GQ V++D V D GK Sbjct: 4 GTVKFFNSQKGFGFIQQD---EGGPDVFVHISDVERSGLYGLNDGQKVSFDIVA-DNRGK 59 Query: 65 YSAENL 70 A NL Sbjct: 60 SKASNL 65 >gi|210622637|ref|ZP_03293297.1| hypothetical protein CLOHIR_01245 [Clostridium hiranonis DSM 13275] gi|210154138|gb|EEA85144.1| hypothetical protein CLOHIR_01245 [Clostridium hiranonis DSM 13275] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI+ EG DDVF+H SA+ + G +L EGQ V ++ V + A G Sbjct: 4 GVVKWFNNEKGFGFISVEGE----DDVFVHFSAIQTEGYKSLEEGQKVEFEVV-DGAKGP 58 Query: 65 YSAENLKL 72 +A +KL Sbjct: 59 QAANVVKL 66 >gi|260774268|ref|ZP_05883183.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14] gi|260611229|gb|EEX36433.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14] Length = 70 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N KG+GF+TP+ G DVF+H +++AS G L EGQ V+++ Q Sbjct: 7 GSVKWFNETKGFGFLTPD---NGGSDVFVHFNSIASEGFKTLAEGQKVSFNVEQ 57 >gi|154248732|ref|YP_001409557.1| cold-shock DNA-binding domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154152668|gb|ABS59900.1| putative cold-shock DNA-binding domain protein [Fervidobacterium nodosum Rt17-B1] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KGYGFIT E G+D+F+H SA+ + G L EG V ++ VQN G Sbjct: 2 KGTVKWFDAKKGYGFITK----EDGEDIFVHYSAIQAEGYKTLKEGDKVEFE-VQNGQKG 56 Query: 64 KYSAENLKLV 73 +A N+K++ Sbjct: 57 PQAA-NVKVI 65 >gi|219119929|ref|XP_002180715.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408188|gb|EEC48123.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 71 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KG+GFI P+ +E DVF+H+++V S G +L EG+ V + ++ D G+ Sbjct: 9 GTVKWFDVKKGFGFIVPDDGSE---DVFVHQTSVHSEGFRSLAEGEPVEFS-IKEDDRGR 64 Query: 65 YSAENL 70 SAE + Sbjct: 65 KSAERV 70 >gi|220911902|ref|YP_002487211.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|219858780|gb|ACL39122.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI+P+ S++ DVF H SA+ S+G +L E Q V++D Q Sbjct: 4 GTVKWFNAEKGFGFISPDDSSQ---DVFAHYSAINSSGFRSLEENQKVSFDTEQ 54 >gi|294141223|ref|YP_003557201.1| cold shock-like protein cspA [Shewanella violacea DSS12] gi|22256742|sp|Q9S1B7|CSPA_SHEVD RecName: Full=Cold shock-like protein CspA gi|5869504|dbj|BAA84217.1| CspA [Shewanella violacea] gi|293327692|dbj|BAJ02423.1| cold shock-like protein cspA [Shewanella violacea DSS12] Length = 70 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N DKG+GF+T + G DVF+H A+AS G L EGQ VT++ Q Sbjct: 7 GTVKWFNEDKGFGFLTQD---NGGADVFVHFRAIASEGFKTLDEGQKVTFEVEQ 57 >gi|150020181|ref|YP_001305535.1| cold-shock DNA-binding domain-containing protein [Thermosipho melanesiensis BI429] gi|149792702|gb|ABR30150.1| putative cold-shock DNA-binding domain protein [Thermosipho melanesiensis BI429] Length = 65 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 5/64 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KGYGFIT E G+D+F+H SA+ + G L EGQ V ++ VQ+ G Sbjct: 2 KGTVKWFDAKKGYGFIT----KEDGEDIFVHWSAIQTEGFKTLKEGQEVEFE-VQDGQKG 56 Query: 64 KYSA 67 +A Sbjct: 57 PQAA 60 >gi|148378284|ref|YP_001252825.1| cold shock protein [Clostridium botulinum A str. ATCC 3502] gi|153932083|ref|YP_001382685.1| cold shock protein [Clostridium botulinum A str. ATCC 19397] gi|153937821|ref|YP_001386236.1| cold shock protein [Clostridium botulinum A str. Hall] gi|153940157|ref|YP_001389651.1| cold shock protein [Clostridium botulinum F str. Langeland] gi|168177625|ref|ZP_02612289.1| cold shock protein [Clostridium botulinum NCTC 2916] gi|168182105|ref|ZP_02616769.1| cold shock protein [Clostridium botulinum Bf] gi|170755331|ref|YP_001779935.1| cold shock protein [Clostridium botulinum B1 str. Okra] gi|187777110|ref|ZP_02993583.1| hypothetical protein CLOSPO_00655 [Clostridium sporogenes ATCC 15579] gi|226947506|ref|YP_002802597.1| cold shock protein [Clostridium botulinum A2 str. Kyoto] gi|237793603|ref|YP_002861155.1| cold shock protein [Clostridium botulinum Ba4 str. 657] gi|148287768|emb|CAL81834.1| cold shock protein [Clostridium botulinum A str. ATCC 3502] gi|152928127|gb|ABS33627.1| cold shock protein [Clostridium botulinum A str. ATCC 19397] gi|152933735|gb|ABS39234.1| cold shock protein [Clostridium botulinum A str. Hall] gi|152936053|gb|ABS41551.1| cold shock protein [Clostridium botulinum F str. Langeland] gi|169120543|gb|ACA44379.1| cold shock protein [Clostridium botulinum B1 str. Okra] gi|182670885|gb|EDT82859.1| cold shock protein [Clostridium botulinum NCTC 2916] gi|182674516|gb|EDT86477.1| cold shock protein [Clostridium botulinum Bf] gi|187774038|gb|EDU37840.1| hypothetical protein CLOSPO_00655 [Clostridium sporogenes ATCC 15579] gi|226842860|gb|ACO85526.1| cold shock protein [Clostridium botulinum A2 str. Kyoto] gi|229261379|gb|ACQ52412.1| cold shock protein [Clostridium botulinum Ba4 str. 657] gi|295317741|gb|ADF98118.1| cold shock protein [Clostridium botulinum F str. 230613] gi|322804547|emb|CBZ02098.1| cold shock protein CspG [Clostridium botulinum H04402 065] Length = 65 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFIT E G+DVF H S + S G +L EGQ V+YD V+ + Sbjct: 3 GTVKWFNGEKGFGFIT----GEDGNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKGPQ 58 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 59 --AENITII 65 >gi|87200599|ref|YP_497856.1| cold-shock DNA-binding protein family protein [Novosphingobium aromaticivorans DSM 12444] gi|87136280|gb|ABD27022.1| cold-shock DNA-binding protein family [Novosphingobium aromaticivorans DSM 12444] Length = 68 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKGYGFI P+G D F+H SAV +G+ L + Q V Y+ ++ D GK Sbjct: 4 GTVKFFNVDKGYGFIAPDGGAP---DNFVHISAVERSGMATLDKDQRVQYE-LETDKRGK 59 Query: 65 YSAENLK 71 SA NL+ Sbjct: 60 TSAVNLQ 66 >gi|114321823|ref|YP_743506.1| cold-shock DNA-binding protein family protein [Alkalilimnicola ehrlichii MLHE-1] gi|114228217|gb|ABI58016.1| cold-shock DNA-binding protein family [Alkalilimnicola ehrlichii MLHE-1] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KG+GFITP T+ G DVF+H SA+ +G +L EGQ V ++ QN G Sbjct: 4 GTVKWFDDAKGFGFITP---TDGGKDVFVHHSAINGSGFKSLAEGQQVQFE-TQNTPKGL 59 Query: 65 YSA 67 +A Sbjct: 60 AAA 62 >gi|328952776|ref|YP_004370110.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453100|gb|AEB08929.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans DSM 11109] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M G++KW+N KG+GFI S ESG DVF+H SA+ + G +L+E Q V ++ VQ Sbjct: 1 MKENGTVKWFNNSKGFGFI----SRESGPDVFVHHSAIQTDGYRSLSENQAVEFEVVQ 54 >gi|313901283|ref|ZP_07834770.1| cold shock protein CspB [Clostridium sp. HGF2] gi|312953891|gb|EFR35572.1| cold shock protein CspB [Clostridium sp. HGF2] Length = 65 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +KW+N +KGYGFI E G D+F+H S + G +L EGQ VT+D V +D Sbjct: 2 KGKVKWFNAEKGYGFINGE----DGKDIFVHYSHIQQEGYKSLEEGQEVTFDTVDSD 54 >gi|242373700|ref|ZP_04819274.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W1] gi|242348668|gb|EES40270.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W1] Length = 77 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 11 IMKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQSVEFEVVEGD 66 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 67 -RGPQAANVVKL 77 >gi|152995681|ref|YP_001340516.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150836605|gb|ABR70581.1| putative cold-shock DNA-binding domain protein [Marinomonas sp. MWYL1] Length = 69 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI ESG DVF H SA+AS+G L EGQ V ++V Sbjct: 6 KGTVKWFNEIKGFGFI----EQESGPDVFAHFSAIASSGFKTLAEGQQV--EFVVTAGQK 59 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 60 GPQAENITVL 69 >gi|255065177|ref|ZP_05317032.1| cold shock transcription regulator protein [Neisseria sicca ATCC 29256] gi|269214299|ref|ZP_06158484.1| cold shock transcription regulator protein [Neisseria lactamica ATCC 23970] gi|288575418|ref|ZP_05976942.2| cold shock transcription regulator protein [Neisseria mucosa ATCC 25996] gi|297250909|ref|ZP_06865276.2| cold shock transcription regulator protein [Neisseria polysaccharea ATCC 43768] gi|255050598|gb|EET46062.1| cold shock transcription regulator protein [Neisseria sicca ATCC 29256] gi|269210156|gb|EEZ76611.1| cold shock transcription regulator protein [Neisseria lactamica ATCC 23970] gi|288568095|gb|EFC89655.1| cold shock transcription regulator protein [Neisseria mucosa ATCC 25996] gi|296837712|gb|EFH21650.1| cold shock transcription regulator protein [Neisseria polysaccharea ATCC 43768] Length = 80 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D V Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFD-VTTG 68 Query: 61 ANGKYSA 67 GK +A Sbjct: 69 PKGKQAA 75 >gi|118595186|ref|ZP_01552533.1| putative cold-shock protein [Methylophilales bacterium HTCC2181] gi|118440964|gb|EAV47591.1| putative cold-shock protein [Methylophilales bacterium HTCC2181] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITPE + GDD+F H SA+ G +L EG+ VT++ V + GK Sbjct: 4 GTVKWFNDSKGFGFITPE---DGGDDLFAHFSAIVDDGYKSLKEGETVTFE-VTDGPKGK 59 Query: 65 YSA 67 ++ Sbjct: 60 QAS 62 >gi|114797581|ref|YP_759686.1| cold shock protein [Hyphomonas neptunium ATCC 15444] gi|114737755|gb|ABI75880.1| cold shock protein [Hyphomonas neptunium ATCC 15444] Length = 69 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K++N KG+GFI+P T G+DVF+H S + +G+ +L EGQ V++D + +GK Sbjct: 4 GIVKFFNSQKGFGFISP---TNGGNDVFVHISTLERSGIAHLNEGQKVSFDTAIDKRSGK 60 Query: 65 YSAENLKL 72 + ++L Sbjct: 61 SAVSAIEL 68 >gi|327441552|dbj|BAK17917.1| cold shock protein [Solibacillus silvestris StLB046] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ V +D Sbjct: 1 MQQGTVKWFNSEKGFGFIEVEG----GNDVFVHFSAIQGEGFKTLDEGQKVEFD 50 >gi|317122838|ref|YP_004102841.1| cold-shock DNA-binding protein family [Thermaerobacter marianensis DSM 12885] gi|315592818|gb|ADU52114.1| cold-shock DNA-binding protein family [Thermaerobacter marianensis DSM 12885] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFIT + + DVF+H SA+ G L EGQ VT+D V+ + K Sbjct: 3 GTVKWFNAEKGYGFITRD---DGQGDVFVHFSAIVGTGYRTLEEGQKVTFDVVEGEKGPK 59 Query: 65 YSAENLKLV 73 A+N+ ++ Sbjct: 60 --AQNVVVL 66 >gi|302391875|ref|YP_003827695.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM 5501] gi|302203952|gb|ADL12630.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM 5501] Length = 110 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KGYGFI E GDD+F+H +A+ G +L E Q V+++ V++D Sbjct: 48 GKVKWFDTKKGYGFIEQE----DGDDIFVHYTAIQEEGFKDLEEEQQVSFEVVESDKG-- 101 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 102 LQAENVTKV 110 >gi|262374770|ref|ZP_06068038.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] gi|262310301|gb|EEY91397.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] Length = 71 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KG+GFI ESG DVF H S ++S+G L EGQ+V + Q Sbjct: 6 IVKGTVKWFNETKGFGFI----QQESGPDVFAHFSEISSSGFKTLMEGQMVEFSVAQ 58 >gi|239980196|ref|ZP_04702720.1| cold shock protein [Streptomyces albus J1074] gi|291452050|ref|ZP_06591440.1| cold shock protein [Streptomyces albus J1074] gi|291354999|gb|EFE81901.1| cold shock protein [Streptomyces albus J1074] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q VT+D Q Sbjct: 4 GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVTFDVTQ 54 >gi|223973253|gb|ACN30814.1| unknown [Zea mays] Length = 444 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 RG++KW+N KG+GFI+PE +E D+F+H+S++ S G +L EG+ V + + D + Sbjct: 7 QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD-D 62 Query: 63 GKYSAENL 70 G+ A ++ Sbjct: 63 GRTKAVDV 70 >gi|153875276|ref|ZP_02003150.1| Cold-shock DNA-binding domain protein [Beggiatoa sp. PS] gi|152068260|gb|EDN66850.1| Cold-shock DNA-binding domain protein [Beggiatoa sp. PS] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + RG+IKW+N KG+GFI+P T+ G DVF+H S + G L EGQ V ++ Sbjct: 1 MMRGTIKWFNETKGFGFISP---TDDGRDVFVHYSCIQQKGFKTLKEGQEVEFE 51 >gi|300310729|ref|YP_003774821.1| cold-shock DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] gi|300073514|gb|ADJ62913.1| cold-shock DNA-binding domain protein [Herbaspirillum seropedicae SmR1] Length = 68 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + G+D+F H SA+ G L EGQ V +D Q Sbjct: 4 GTVKWFNDSKGFGFITPD---DGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQ 54 >gi|256390666|ref|YP_003112230.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256356892|gb|ACU70389.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI+ + E G DVF+H SA+ S+G +L E Q V ++ Q Sbjct: 3 QGTVKWFNGEKGYGFISQD---EGGPDVFVHFSAIQSSGYRSLEENQRVEFEVTQGPKGA 59 Query: 64 KYSAENLKLV 73 + AEN++ V Sbjct: 60 Q--AENVRPV 67 >gi|228475724|ref|ZP_04060442.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|228270506|gb|EEK11941.1| conserved hypothetical protein [Staphylococcus hominis SK119] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 8/73 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E GDDVF+H S +A+ G L EGQ V +D + Sbjct: 1 MNNGTVKWFNAEKGFGFI----EREDGDDVFVHFSGIATDGYKTLEEGQKVEFDITE--- 53 Query: 62 NGKYSAENLKLVP 74 G+ + +VP Sbjct: 54 -GQRGKQATNVVP 65 >gi|116326593|ref|YP_796514.1| cold-shock DNA-binding protein family protein [Lactococcus lactis subsp. cremoris SK11] gi|190571792|ref|YP_001966471.1| CSPD [Lactococcus lactis] gi|281491666|ref|YP_003353646.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|76574948|gb|ABA47417.1| cold shock protein D [Lactococcus lactis] gi|108736191|gb|ABG00320.1| CSPD [Lactococcus lactis] gi|116108961|gb|ABJ74083.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp. cremoris SK11] gi|281375384|gb|ADA64897.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N DKG+GFIT +E G D+F H SA+ S G L EGQ V +D Sbjct: 4 GTVKWFNADKGFGFIT----SEEGKDLFAHFSAIQSDGFKTLDEGQKVEFD 50 >gi|319936791|ref|ZP_08011203.1| cold shock protein cspD [Coprobacillus sp. 29_1] gi|319808059|gb|EFW04631.1| cold shock protein cspD [Coprobacillus sp. 29_1] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N +KG+GFIT +G G D+F+H +++A G +L EGQ V++D Q D Sbjct: 1 MNTGKVKWFNSEKGFGFITVDG----GKDIFVHYTSIAGHGYKSLEEGQNVSFDVTQGD 55 >gi|307107761|gb|EFN56003.1| hypothetical protein CHLNCDRAFT_145396 [Chlorella variabilis] Length = 301 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFIT E ES D+VF+H+S + + G +L EG+ V +D V D +GK Sbjct: 15 GTVKWFNSTKGYGFITCE---ESEDEVFVHQSNIETTGYRSLKEGEEVEFDLVVAD-DGK 70 Query: 65 YSAENL 70 A L Sbjct: 71 KKAFRL 76 >gi|161869773|ref|YP_001598941.1| transcriptional regulator [Neisseria meningitidis 053442] gi|304387853|ref|ZP_07370027.1| cold shock transcription regulator protein [Neisseria meningitidis ATCC 13091] gi|161595326|gb|ABX72986.1| transcriptional regulator [Neisseria meningitidis 053442] gi|304338118|gb|EFM04254.1| cold shock transcription regulator protein [Neisseria meningitidis ATCC 13091] gi|325129992|gb|EGC52787.1| putative transcriptional regulator [Neisseria meningitidis OX99.30304] gi|325132021|gb|EGC54719.1| putative transcriptional regulator [Neisseria meningitidis M6190] gi|325134026|gb|EGC56681.1| putative transcriptional regulator [Neisseria meningitidis M13399] gi|325135947|gb|EGC58557.1| putative transcriptional regulator [Neisseria meningitidis M0579] gi|325137775|gb|EGC60350.1| putative transcriptional regulator [Neisseria meningitidis ES14902] gi|325140014|gb|EGC62543.1| putative transcriptional regulator [Neisseria meningitidis CU385] gi|325142116|gb|EGC64542.1| putative transcriptional regulator [Neisseria meningitidis 961-5945] gi|325144132|gb|EGC66439.1| putative transcriptional regulator [Neisseria meningitidis M01-240013] gi|325198041|gb|ADY93497.1| putative transcriptional regulator [Neisseria meningitidis G2136] gi|325200482|gb|ADY95937.1| putative transcriptional regulator [Neisseria meningitidis H44/76] gi|325202374|gb|ADY97828.1| putative transcriptional regulator [Neisseria meningitidis M01-240149] gi|325203909|gb|ADY99362.1| putative transcriptional regulator [Neisseria meningitidis M01-240355] gi|325206328|gb|ADZ01781.1| putative transcriptional regulator [Neisseria meningitidis M04-240196] gi|325207874|gb|ADZ03326.1| putative transcriptional regulator [Neisseria meningitidis NZ-05/33] Length = 80 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D V Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFD-VTTG 68 Query: 61 ANGKYSA 67 GK +A Sbjct: 69 PKGKQAA 75 >gi|256751272|ref|ZP_05492152.1| cold-shock DNA-binding domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|289578721|ref|YP_003477348.1| cold-shock DNA-binding domain protein [Thermoanaerobacter italicus Ab9] gi|297544955|ref|YP_003677257.1| cold-shock DNA-binding domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|307266235|ref|ZP_07547777.1| cold-shock DNA-binding domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326390559|ref|ZP_08212115.1| cold-shock DNA-binding domain protein [Thermoanaerobacter ethanolicus JW 200] gi|256749827|gb|EEU62851.1| cold-shock DNA-binding domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|289528434|gb|ADD02786.1| cold-shock DNA-binding domain protein [Thermoanaerobacter italicus Ab9] gi|296842730|gb|ADH61246.1| cold-shock DNA-binding domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|306918765|gb|EFN48997.1| cold-shock DNA-binding domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325993384|gb|EGD51820.1| cold-shock DNA-binding domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 RG +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V ++ V+ Sbjct: 3 RGKVKWFNAEKGYGFI----EREDGTDVFVHYSAIEGDGFKTLEEGQKVEFEVVE 53 >gi|297201608|ref|ZP_06919005.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|197711021|gb|EDY55055.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|311897871|dbj|BAJ30279.1| putative cold shock protein [Kitasatospora setae KM-6054] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G DVF+H SA+ ++G +L E Q V++D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQAVSFDVTQGPKGPQ 60 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 61 --AENVTPV 67 >gi|160947736|ref|ZP_02094903.1| hypothetical protein PEPMIC_01671 [Parvimonas micra ATCC 33270] gi|158446870|gb|EDP23865.1| hypothetical protein PEPMIC_01671 [Parvimonas micra ATCC 33270] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDAN 62 +G++KW+N KG+GFI STE G+DVF+H SA+ G F L EGQ V ++ V+ A Sbjct: 2 KGTVKWFNAAKGFGFI----STEDGEDVFVHYSALEETGEFRTLDEGQAVEFEIVEG-AK 56 Query: 63 GKYSAENLKL 72 G ++ +KL Sbjct: 57 GPQASGVVKL 66 >gi|149185568|ref|ZP_01863884.1| Cold shock protein [Erythrobacter sp. SD-21] gi|148830788|gb|EDL49223.1| Cold shock protein [Erythrobacter sp. SD-21] Length = 70 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G++K++N DKGYGFI P +GS +S F+H SAV +AG+ L + Q + Y+ V+ Sbjct: 1 MAKTGTVKFFNSDKGYGFIQPDDGSADS----FVHISAVQAAGMQTLDKEQRLNYE-VEQ 55 Query: 60 DANGKYSAENL 70 NGK SA N+ Sbjct: 56 GRNGKESAVNI 66 >gi|114049935|emb|CAK50952.1| putative cold shock protein [Streptomyces ambofaciens] gi|114050157|emb|CAK51190.1| putative cold shock protein [Streptomyces ambofaciens] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDGG---GADVFAHYSNIAAQGFRELLEGQKVTFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|294648554|ref|ZP_06726022.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194] gi|292825556|gb|EFF84291.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194] Length = 71 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 V +G++KW+N KG+GFI ESG DVF H S +AS+G L EGQ V + Q Sbjct: 6 VVKGTVKWFNETKGFGFI----QQESGPDVFAHFSEIASSGFKTLMEGQQVEFSVAQ 58 >gi|85709247|ref|ZP_01040312.1| Cold shock protein [Erythrobacter sp. NAP1] gi|85687957|gb|EAQ27961.1| Cold shock protein [Erythrobacter sp. NAP1] Length = 71 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+K++N DKGYGFI P+ + D F+H SAV +AG+ L + Q + Y+ V+ NGK Sbjct: 6 GSVKFFNADKGYGFIQPDDGSA---DSFVHISAVQAAGMQTLDKEQRLNYE-VETGRNGK 61 Query: 65 YSAENL 70 SA NL Sbjct: 62 ESAVNL 67 >gi|308274453|emb|CBX31052.1| Cold shock-like protein cspLA [uncultured Desulfobacterium sp.] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G+DVF+H SA+ S G +L+EG VT+D V N G Sbjct: 4 GTVKWFNDRKGFGFI----EQENGNDVFVHHSAINSNGFKSLSEGDRVTFDVV-NGPKGP 58 Query: 65 YSAENLKL 72 +A KL Sbjct: 59 GAANVTKL 66 >gi|237807342|ref|YP_002891782.1| cold-shock DNA-binding domain-containing protein [Tolumonas auensis DSM 9187] gi|237499603|gb|ACQ92196.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM 9187] Length = 69 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 GS+KW+N KG+GF++ + G DVF+H SA+AS G L EGQ V++D Sbjct: 6 GSVKWFNETKGFGFLSQD---NGGKDVFVHFSAIASTGFKTLAEGQAVSFD 53 >gi|300790362|ref|YP_003770653.1| cold shock protein CspA [Amycolatopsis mediterranei U32] gi|299799876|gb|ADJ50251.1| cold shock protein CspA [Amycolatopsis mediterranei U32] Length = 68 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI STE G DVF+H SA+ S G L EG V ++ VQ+ +G+ Sbjct: 4 GTVKWFNSEKGYGFIE---STE-GPDVFVHYSAIQSEGFRTLDEGDRVEFE-VQSGRDGR 58 Query: 65 YSAENLKLV 73 A +++ V Sbjct: 59 SQAADVRKV 67 >gi|52079383|ref|YP_078174.1| major cold-shock protein [Bacillus licheniformis ATCC 14580] gi|52784743|ref|YP_090572.1| CspB [Bacillus licheniformis ATCC 14580] gi|154685371|ref|YP_001420532.1| CspB [Bacillus amyloliquefaciens FZB42] gi|308172897|ref|YP_003919602.1| major cold-shock protein [Bacillus amyloliquefaciens DSM 7] gi|319646836|ref|ZP_08001065.1| cold shock protein cspB [Bacillus sp. BT1B_CT2] gi|52002594|gb|AAU22536.1| major cold-shock protein [Bacillus licheniformis ATCC 14580] gi|52347245|gb|AAU39879.1| CspB [Bacillus licheniformis ATCC 14580] gi|154351222|gb|ABS73301.1| CspB [Bacillus amyloliquefaciens FZB42] gi|307605761|emb|CBI42132.1| major cold-shock protein [Bacillus amyloliquefaciens DSM 7] gi|317391424|gb|EFV72222.1| cold shock protein cspB [Bacillus sp. BT1B_CT2] gi|328552537|gb|AEB23029.1| major cold-shock protein [Bacillus amyloliquefaciens TA208] gi|328910937|gb|AEB62533.1| major cold-shock protein [Bacillus amyloliquefaciens LL3] Length = 66 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 3 EGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQSVSFEIVEGN 55 >gi|295798071|emb|CAX68890.1| Cold-shock protein DNA-binding domain [uncultured bacterium] Length = 73 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 ++ +G +KW+N KGYGF+ P+G E G DVF+H SA+ G LT GQ V ++ V Sbjct: 5 VLTKGKVKWFNNQKGYGFVNPDG--EEGRDVFVHYSAIQGDGYKTLTTGQDVEFELV 59 >gi|229084702|ref|ZP_04216967.1| Cold shock-like protein cspB [Bacillus cereus Rock3-44] gi|228698586|gb|EEL51306.1| Cold shock-like protein cspB [Bacillus cereus Rock3-44] Length = 65 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG+ DDVF+H SA+ G L EGQ V++D V+ + G Sbjct: 2 QGKVKWFNNEKGFGFIEIEGA----DDVFVHFSAIQGDGYKALEEGQEVSFDIVEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|166711808|ref|ZP_02243015.1| major cold shock protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 69 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GIVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQ 58 >gi|92113792|ref|YP_573720.1| cold-shock DNA-binding protein family protein [Chromohalobacter salexigens DSM 3043] gi|91796882|gb|ABE59021.1| cold-shock DNA-binding protein family [Chromohalobacter salexigens DSM 3043] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+PE + GDD+F H S + + G +L +GQ V++D Q Sbjct: 4 GTVKWFNDAKGFGFISPE---DGGDDLFAHFSEIQAEGFKSLQDGQKVSFDVTQ 54 >gi|188586832|ref|YP_001918377.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351519|gb|ACB85789.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 65 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N D+GYGFI +G GDDVF+H SA+ G L +GQ V ++ V+ G Sbjct: 2 QGKVKWFNADRGYGFIERDG----GDDVFVHYSAIQEEGFKTLEDGQDVEFEIVEG-PRG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|167037174|ref|YP_001664752.1| cold-shock DNA-binding domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040687|ref|YP_001663672.1| cold-shock DNA-binding domain-containing protein [Thermoanaerobacter sp. X514] gi|300914728|ref|ZP_07132044.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp. X561] gi|307724038|ref|YP_003903789.1| cold-shock DNA-binding domain-containing protein [Thermoanaerobacter sp. X513] gi|320115592|ref|YP_004185751.1| Cold-shock protein DNA-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854927|gb|ABY93336.1| putative cold-shock DNA-binding domain protein [Thermoanaerobacter sp. X514] gi|166856008|gb|ABY94416.1| putative cold-shock DNA-binding domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889663|gb|EFK84809.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp. X561] gi|307581099|gb|ADN54498.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp. X513] gi|319928683|gb|ADV79368.1| Cold-shock protein DNA-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 RG +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V ++ V+ Sbjct: 3 RGKVKWFNAEKGYGFI----EREDGTDVFVHYSAIEGDGFKTLEEGQKVEFEVVE 53 >gi|319939553|ref|ZP_08013913.1| cold shock protein [Streptococcus anginosus 1_2_62CV] gi|319811539|gb|EFW07834.1| cold shock protein [Streptococcus anginosus 1_2_62CV] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI S E+G DVF H SA+ S G +L EG+ VT+D Sbjct: 3 QGTVKWFNAEKGFGFI----SQENGPDVFAHFSAIQSDGFKSLNEGEKVTFD 50 >gi|222053850|ref|YP_002536212.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] gi|221563139|gb|ACM19111.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] Length = 67 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N KG+GFI S ++G+DVF+H SA++ G L EG VT+D V+ Sbjct: 1 MEKGIVKWFNESKGFGFI----SRDTGEDVFVHFSAISGEGFKTLNEGDAVTFDVVK 53 >gi|294101358|ref|YP_003553216.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] gi|293616338|gb|ADE56492.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] Length = 66 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N KGYGFIT T+ G DVF+H SA+ G L E Q V++D Q + Sbjct: 3 QGTVKWFNDSKGYGFIT----TDEGKDVFVHYSAIMGDGFKTLAENQRVSFDVTQGE 55 >gi|325981354|ref|YP_004293756.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas sp. AL212] gi|325530873|gb|ADZ25594.1| cold-shock DNA-binding domain protein [Nitrosomonas sp. AL212] Length = 67 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ +E D+F H SA+ +G L EGQ V++D Q Sbjct: 4 GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMSGFKTLKEGQKVSFDVTQ 54 >gi|148265690|ref|YP_001232396.1| cold-shock DNA-binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146399190|gb|ABQ27823.1| cold-shock DNA-binding protein family [Geobacter uraniireducens Rf4] Length = 66 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI E+G+DVF+H S++ G +L EGQ VT+D VQ Sbjct: 4 GVVKWFNDSKGFGFI----EQENGEDVFVHFSSIQGDGFKSLAEGQAVTFDIVQ 53 >gi|15924392|ref|NP_371926.1| major cold shock protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926982|ref|NP_374515.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus N315] gi|21283019|ref|NP_646107.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus MW2] gi|49483592|ref|YP_040816.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486243|ref|YP_043464.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651902|ref|YP_186289.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus COL] gi|82750994|ref|YP_416735.1| cold shock protein [Staphylococcus aureus RF122] gi|87161577|ref|YP_493992.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195129|ref|YP_499930.1| cold shock protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267890|ref|YP_001246833.1| cold-shock DNA-binding domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150393953|ref|YP_001316628.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus JH1] gi|151221525|ref|YP_001332347.1| major cold-shock protein CspA [Staphylococcus aureus subsp. aureus str. Newman] gi|156979721|ref|YP_001441980.1| major cold shock protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509568|ref|YP_001575227.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140629|ref|ZP_03565122.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315273|ref|ZP_04838486.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732039|ref|ZP_04866204.1| major cold shock protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733351|ref|ZP_04867516.1| major cold shock protein [Staphylococcus aureus subsp. aureus TCH130] gi|255006191|ref|ZP_05144792.2| CSD family cold shock protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425466|ref|ZP_05601891.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428126|ref|ZP_05604524.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus 65-1322] gi|257430757|ref|ZP_05607139.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus 68-397] gi|257433517|ref|ZP_05609875.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus E1410] gi|257436358|ref|ZP_05612405.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus M876] gi|257795543|ref|ZP_05644522.1| major cold shock protein CspA [Staphylococcus aureus A9781] gi|258413351|ref|ZP_05681627.1| major cold shock protein CspA [Staphylococcus aureus A9763] gi|258420542|ref|ZP_05683484.1| major cold shock protein CspA [Staphylococcus aureus A9719] gi|258423666|ref|ZP_05686554.1| CSD family cold shock protein [Staphylococcus aureus A9635] gi|258434686|ref|ZP_05688760.1| major cold-shock protein CspA [Staphylococcus aureus A9299] gi|258444738|ref|ZP_05693067.1| major cold shock protein [Staphylococcus aureus A8115] gi|258447427|ref|ZP_05695571.1| major cold shock protein CspA [Staphylococcus aureus A6300] gi|258449268|ref|ZP_05697371.1| major cold shock protein CspA [Staphylococcus aureus A6224] gi|258452191|ref|ZP_05700206.1| cold shock protein cspA [Staphylococcus aureus A5948] gi|258454648|ref|ZP_05702612.1| major cold shock protein CspA [Staphylococcus aureus A5937] gi|262050357|ref|ZP_06023200.1| major cold shock protein CspA [Staphylococcus aureus D30] gi|269203025|ref|YP_003282294.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus ED98] gi|282892895|ref|ZP_06301130.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A8117] gi|282903982|ref|ZP_06311870.1| conserved domain protein [Staphylococcus aureus subsp. aureus C160] gi|282905747|ref|ZP_06313602.1| cold shock protein beta-ribbon CspA family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908718|ref|ZP_06316536.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910982|ref|ZP_06318784.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WBG10049] gi|282914190|ref|ZP_06321977.1| conserved domain protein [Staphylococcus aureus subsp. aureus M899] gi|282916668|ref|ZP_06324426.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus D139] gi|282919112|ref|ZP_06326847.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus C427] gi|282924295|ref|ZP_06331969.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus C101] gi|282927926|ref|ZP_06335535.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A10102] gi|282929069|ref|ZP_06336651.1| cold shock protein cspA [Staphylococcus aureus A9765] gi|283770473|ref|ZP_06343365.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus aureus subsp. aureus H19] gi|283958164|ref|ZP_06375615.1| conserved domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284024402|ref|ZP_06378800.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus 132] gi|293501217|ref|ZP_06667068.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus 58-424] gi|293510178|ref|ZP_06668886.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus M809] gi|293526770|ref|ZP_06671455.1| conserved domain protein [Staphylococcus aureus subsp. aureus M1015] gi|294850737|ref|ZP_06791456.1| cold shock protein [Staphylococcus aureus A9754] gi|295406349|ref|ZP_06816156.1| cold shock protein [Staphylococcus aureus A8819] gi|295427915|ref|ZP_06820547.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275262|ref|ZP_06857769.1| stationary phase/starvation inducible regulatory protein CspD [Staphylococcus aureus subsp. aureus MR1] gi|297207943|ref|ZP_06924375.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244578|ref|ZP_06928461.1| cold shock protein CspB [Staphylococcus aureus A8796] gi|297591124|ref|ZP_06949762.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8] gi|300912027|ref|ZP_07129470.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus TCH70] gi|304381021|ref|ZP_07363676.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81827857|sp|Q6G9F9|CSPA_STAAS RecName: Full=Cold shock protein CspA gi|81828019|sp|Q6GH06|CSPA_STAAR RecName: Full=Cold shock protein CspA gi|81832398|sp|Q7A0X3|CSPA_STAAW RecName: Full=Cold shock protein CspA gi|81832432|sp|Q7A2R8|CSPA_STAAM RecName: Full=Cold shock protein CspA gi|81832507|sp|Q7A5P3|CSPA_STAAN RecName: Full=Cold shock protein CspA gi|81859588|sp|Q5HG18|CSPA_STAAC RecName: Full=Cold shock protein CspA gi|118572254|sp|Q2FH36|CSPA_STAA3 RecName: Full=Cold shock protein CspA gi|118572255|sp|Q2FYN2|CSPA_STAA8 RecName: Full=Cold shock protein CspA gi|118572256|sp|Q2YY16|CSPA_STAAB RecName: Full=Cold shock protein CspA gi|8101860|gb|AAF72664.1|AF259960_1 major cold shock protein CspA [Staphylococcus aureus] gi|13701199|dbj|BAB42494.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus N315] gi|14247173|dbj|BAB57564.1| major cold shock protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204458|dbj|BAB95155.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus MW2] gi|49241721|emb|CAG40411.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244686|emb|CAG43119.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286088|gb|AAW38182.1| cold shock protein, CSD family [Staphylococcus aureus subsp. aureus COL] gi|82656525|emb|CAI80947.1| cold shock protein [Staphylococcus aureus RF122] gi|87127551|gb|ABD22065.1| cold shock protein, CSD family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202687|gb|ABD30497.1| cold shock protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740959|gb|ABQ49257.1| cold-shock DNA-binding protein family [Staphylococcus aureus subsp. aureus JH9] gi|149946405|gb|ABR52341.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus JH1] gi|150374325|dbj|BAF67585.1| major cold-shock protein CspA [Staphylococcus aureus subsp. aureus str. Newman] gi|156721856|dbj|BAF78273.1| major cold shock protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368377|gb|ABX29348.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724230|gb|EES92959.1| major cold shock protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728703|gb|EES97432.1| major cold shock protein [Staphylococcus aureus subsp. aureus TCH130] gi|257271923|gb|EEV04061.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 55/2053] gi|257274967|gb|EEV06454.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus 65-1322] gi|257278885|gb|EEV09504.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus 68-397] gi|257281610|gb|EEV11747.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus E1410] gi|257284640|gb|EEV14760.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus M876] gi|257789515|gb|EEV27855.1| major cold shock protein CspA [Staphylococcus aureus A9781] gi|257839915|gb|EEV64383.1| major cold shock protein CspA [Staphylococcus aureus A9763] gi|257843490|gb|EEV67897.1| major cold shock protein CspA [Staphylococcus aureus A9719] gi|257846164|gb|EEV70190.1| CSD family cold shock protein [Staphylococcus aureus A9635] gi|257849047|gb|EEV73029.1| major cold-shock protein CspA [Staphylococcus aureus A9299] gi|257850231|gb|EEV74184.1| major cold shock protein [Staphylococcus aureus A8115] gi|257853618|gb|EEV76577.1| major cold shock protein CspA [Staphylococcus aureus A6300] gi|257857256|gb|EEV80154.1| major cold shock protein CspA [Staphylococcus aureus A6224] gi|257860128|gb|EEV82961.1| cold shock protein cspA [Staphylococcus aureus A5948] gi|257863031|gb|EEV85795.1| major cold shock protein CspA [Staphylococcus aureus A5937] gi|259161556|gb|EEW46155.1| major cold shock protein CspA [Staphylococcus aureus D30] gi|262075315|gb|ACY11288.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus ED98] gi|269940897|emb|CBI49280.1| cold shock protein [Staphylococcus aureus subsp. aureus TW20] gi|282313682|gb|EFB44075.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus C101] gi|282316922|gb|EFB47296.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus C427] gi|282319155|gb|EFB49507.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus D139] gi|282322258|gb|EFB52582.1| conserved domain protein [Staphylococcus aureus subsp. aureus M899] gi|282324677|gb|EFB54987.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WBG10049] gi|282326982|gb|EFB57277.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331039|gb|EFB60553.1| cold shock protein beta-ribbon CspA family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282590223|gb|EFB95303.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A10102] gi|282591856|gb|EFB96900.1| cold shock protein cspA [Staphylococcus aureus A9765] gi|282595600|gb|EFC00564.1| conserved domain protein [Staphylococcus aureus subsp. aureus C160] gi|282764892|gb|EFC05017.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A8117] gi|283460620|gb|EFC07710.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus aureus subsp. aureus H19] gi|283470617|emb|CAQ49828.1| cold shock protein, CSD family [Staphylococcus aureus subsp. aureus ST398] gi|283790313|gb|EFC29130.1| conserved domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|285817080|gb|ADC37567.1| Cold shock protein CspA [Staphylococcus aureus 04-02981] gi|290920842|gb|EFD97905.1| conserved domain protein [Staphylococcus aureus subsp. aureus M1015] gi|291096222|gb|EFE26483.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus 58-424] gi|291467122|gb|EFF09640.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus M809] gi|294822413|gb|EFG38863.1| cold shock protein [Staphylococcus aureus A9754] gi|294968937|gb|EFG44959.1| cold shock protein [Staphylococcus aureus A8819] gi|295128273|gb|EFG57907.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887411|gb|EFH26312.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178608|gb|EFH37854.1| cold shock protein CspB [Staphylococcus aureus A8796] gi|297576010|gb|EFH94726.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8] gi|298694697|gb|ADI97919.1| cold shock protein [Staphylococcus aureus subsp. aureus ED133] gi|300886273|gb|EFK81475.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus TCH70] gi|302333015|gb|ADL23208.1| putative cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302751231|gb|ADL65408.1| putative cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340437|gb|EFM06376.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438198|gb|ADQ77269.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus TCH60] gi|312829797|emb|CBX34639.1| cold shock protein cspD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131210|gb|EFT87194.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus CGS03] gi|315195294|gb|EFU25681.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus CGS00] gi|315195914|gb|EFU26279.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus CGS01] gi|320140790|gb|EFW32639.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus MRSA131] gi|320142182|gb|EFW34000.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus MRSA177] gi|323438687|gb|EGA96429.1| cold shock protein [Staphylococcus aureus O11] gi|323444056|gb|EGB01667.1| cold shock protein [Staphylococcus aureus O46] gi|329314078|gb|AEB88491.1| Cold shock protein cspA [Staphylococcus aureus subsp. aureus T0131] gi|329725310|gb|EGG61794.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 21189] gi|329733434|gb|EGG69766.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 21193] Length = 66 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQAVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|319651116|ref|ZP_08005249.1| cold shock protein [Bacillus sp. 2_A_57_CT2] gi|317397170|gb|EFV77875.1| cold shock protein [Bacillus sp. 2_A_57_CT2] Length = 66 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFI EG G+DVF+H SA+ + G L EGQ V +D Q Sbjct: 4 GKVKWFNSEKGFGFIEVEG----GEDVFVHYSAIQTEGFKTLDEGQEVNFDIEQ 53 >gi|291326350|ref|ZP_06124178.2| conserved domain protein [Providencia rettgeri DSM 1131] gi|291314673|gb|EFE55126.1| conserved domain protein [Providencia rettgeri DSM 1131] Length = 66 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFITP + DVF+H SA+ S +L EGQ V++ ++N A G Sbjct: 3 GTVKWFNDDKGFGFITP---ADGSKDVFVHFSAIQSDNFKSLAEGQQVSF-TIENGAKGP 58 Query: 65 YSA 67 +A Sbjct: 59 AAA 61 >gi|149179855|ref|ZP_01858360.1| cold shock protein [Bacillus sp. SG-1] gi|148852047|gb|EDL66192.1| cold shock protein [Bacillus sp. SG-1] Length = 66 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ + Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAITGEGFKSLDEGQRVEFEVVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|134095543|ref|YP_001100618.1| cold shock DNA -binding domain-containing protein [Herminiimonas arsenicoxydans] gi|133739446|emb|CAL62496.1| Cold shock protein CspD [Herminiimonas arsenicoxydans] Length = 67 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H SA+ G L EGQ V+++ Q Sbjct: 1 MQTGTVKWFNDSKGFGFITPD---SGGEDLFAHFSAITMEGFKTLKEGQKVSFEVTQG-P 56 Query: 62 NGKYSAENLK 71 GK A N+K Sbjct: 57 KGK-QASNIK 65 >gi|330447207|ref|ZP_08310857.1| cold shock protein CspG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491398|dbj|GAA05354.1| cold shock protein CspG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 70 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GF+T G DVF+H A+AS G LTEGQ V++D Q Sbjct: 7 GLVKWFNEEKGFGFLTQ---NNGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQ 57 >gi|253990644|ref|YP_003042000.1| cold shock protein CspE [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782094|emb|CAQ85258.1| cold shock-like protein cspe [Photorhabdus asymbiotica] Length = 79 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQKVEFE 63 >gi|297580078|ref|ZP_06942005.1| cold-shock DNA-binding domain-containing protein [Vibrio cholerae RC385] gi|297535724|gb|EFH74558.1| cold-shock DNA-binding domain-containing protein [Vibrio cholerae RC385] Length = 70 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N +KG+GFITP+ G DVF+H +++AS G+ L EGQ V + Q Sbjct: 7 GSVKWFNENKGFGFITPD---IGGSDVFVHFNSIASGGVKTLFEGQKVNFSIEQ 57 >gi|266621457|ref|ZP_06114392.1| cold shock protein B [Clostridium hathewayi DSM 13479] gi|288866898|gb|EFC99196.1| cold shock protein B [Clostridium hathewayi DSM 13479] Length = 67 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 3/59 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KGYGFIT + E+G++VF+H S + + G L EGQ VTYD + + Sbjct: 1 MNNGTVKWFNGAKGYGFITND---ETGEEVFVHFSGIMADGYKTLEEGQKVTYDTTEGN 56 >gi|85860691|ref|YP_462893.1| cold shock protein [Syntrophus aciditrophicus SB] gi|85723782|gb|ABC78725.1| cold shock protein [Syntrophus aciditrophicus SB] Length = 66 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI +G G DVF+H SA+ + G +L+EG V++D V Sbjct: 3 EGTVKWFNDSKGFGFIEQDG----GKDVFVHHSAIQAEGFKSLSEGDRVSFDVVVGKKG- 57 Query: 64 KYSAENLKLV 73 SAEN++ V Sbjct: 58 -PSAENVRKV 66 >gi|229135998|ref|ZP_04264758.1| hypothetical protein bcere0014_48750 [Bacillus cereus BDRD-ST196] gi|228647456|gb|EEL03531.1| hypothetical protein bcere0014_48750 [Bacillus cereus BDRD-ST196] Length = 65 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + A G Sbjct: 2 QGRVKWFNAEKGFGFI----EREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56 Query: 64 KYSAENLKL 72 + +KL Sbjct: 57 PQADNVVKL 65 >gi|254477809|ref|ZP_05091195.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp. R11] gi|214032052|gb|EEB72887.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp. R11] Length = 68 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PEG G DVF+H S V +GL L + Q V ++ ++ +G+ Sbjct: 4 GTVKWFNTTKGYGFIEPEG---GGKDVFVHISQVERSGLTGLADNQKVEFEMIEG-RDGR 59 Query: 65 YSAENLK 71 A ++ Sbjct: 60 QMASEIR 66 >gi|84624223|ref|YP_451595.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368163|dbj|BAE69321.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 69 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GIVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQ 56 >gi|302391175|ref|YP_003826995.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] gi|302203252|gb|ADL11930.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] Length = 67 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G++KW++ KGYGFI +E G+DVF+H SA+ G L +GQ V ++ V+ D Sbjct: 1 MILSGTVKWFDTKKGYGFI----ESEEGEDVFVHYSAIDEDGFKTLEDGQEVEFEIVEGD 56 Query: 61 ANGKYSAENL 70 + AEN+ Sbjct: 57 KGPQ--AENV 64 >gi|228990713|ref|ZP_04150678.1| Cold shock-like protein cspB [Bacillus pseudomycoides DSM 12442] gi|228996815|ref|ZP_04156449.1| Cold shock-like protein cspB [Bacillus mycoides Rock3-17] gi|229004492|ref|ZP_04162232.1| Cold shock-like protein cspB [Bacillus mycoides Rock1-4] gi|228756753|gb|EEM06058.1| Cold shock-like protein cspB [Bacillus mycoides Rock1-4] gi|228762876|gb|EEM11789.1| Cold shock-like protein cspB [Bacillus mycoides Rock3-17] gi|228769239|gb|EEM17837.1| Cold shock-like protein cspB [Bacillus pseudomycoides DSM 12442] Length = 65 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG+ DDVF+H +A+ G L EGQ V++D V+ + G Sbjct: 2 QGKVKWFNNEKGFGFIEIEGA----DDVFVHFTAIQGEGYKALEEGQEVSFDIVEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|327440173|dbj|BAK16538.1| cold shock protein [Solibacillus silvestris StLB046] Length = 66 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V ++ V D Sbjct: 1 MKQGTVKWFNSEKGFGFIELEGE----DDVFVHFSAIQGEGFKTLEEGQKVEFEVV--DG 54 Query: 62 NGKYSAENL 70 N A N+ Sbjct: 55 NRGPQASNV 63 >gi|224105199|ref|XP_002313723.1| predicted protein [Populus trichocarpa] gi|222850131|gb|EEE87678.1| predicted protein [Populus trichocarpa] Length = 66 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 46/66 (69%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFITP+ + GDD+F+H+S++ S G +L +G+ V ++ ++N +G+ Sbjct: 1 GKVKWFSDQKGFGFITPD---DGGDDLFVHQSSIKSEGYRSLGDGEEVEFE-IENSDDGR 56 Query: 65 YSAENL 70 A N+ Sbjct: 57 TKAANV 62 >gi|92112688|ref|YP_572616.1| cold-shock DNA-binding protein family protein [Chromohalobacter salexigens DSM 3043] gi|91795778|gb|ABE57917.1| cold-shock DNA-binding protein family [Chromohalobacter salexigens DSM 3043] Length = 155 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KGYGFIT +SG+DVF+H A+ G L EGQ V Y V+N+ Sbjct: 92 GEVKWFNVNKGYGFIT----RDSGEDVFVHFRAIRGKGHRTLAEGQKVRYHVVENE 143 >gi|116335083|ref|YP_802578.1| cold shock protein [Candidatus Carsonella ruddii PV] gi|116235364|dbj|BAF35212.1| cold shock protein [Candidatus Carsonella ruddii PV] Length = 67 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI+P+ + GDD+F+H S + G +L +GQ V++D Q Sbjct: 4 GTVKWFNDTKGFGFISPD---DGGDDLFVHFSEIRVDGFKSLQDGQRVSFDVTQGKKG-- 58 Query: 65 YSAENLKLV 73 A N+K++ Sbjct: 59 LQASNVKVI 67 >gi|58582344|ref|YP_201360.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426938|gb|AAW75975.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 121 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 59 GIVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQ 108 >gi|294811207|ref|ZP_06769850.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|294323806|gb|EFG05449.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064] Length = 92 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ +G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 25 VMAQGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELREGQRVSFDVTQGQ 81 Query: 61 ANGKYSAENL 70 + AEN+ Sbjct: 82 KGPQ--AENI 89 >gi|285017895|ref|YP_003375606.1| cold-shock protein [Xanthomonas albilineans GPE PC73] gi|283473113|emb|CBA15619.1| probable cold-shock protein [Xanthomonas albilineans] Length = 81 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 1/55 (1%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFITPE T+ D+F+H A+ G +L EGQ V++ VQ Sbjct: 15 QGTVKWFNDAKGFGFITPEAGTDL-SDLFVHFRAIQGTGFKSLQEGQKVSFVAVQ 68 >gi|239978906|ref|ZP_04701430.1| cold shock protein [Streptomyces albus J1074] gi|291450789|ref|ZP_06590179.1| cold shock protein [Streptomyces albus J1074] gi|291353738|gb|EFE80640.1| cold shock protein [Streptomyces albus J1074] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A G L EGQ VT+D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDGG---GPDVFAHYSNIAGRGFRELLEGQKVTFDVTQGQKG-- 58 Query: 65 YSAENL 70 AEN+ Sbjct: 59 LQAENI 64 >gi|229100140|ref|ZP_04231042.1| hypothetical protein bcere0020_53410 [Bacillus cereus Rock3-29] gi|229106964|ref|ZP_04237064.1| hypothetical protein bcere0019_56300 [Bacillus cereus Rock3-28] gi|229176343|ref|ZP_04303799.1| hypothetical protein bcere0006_53830 [Bacillus cereus MM3] gi|228607130|gb|EEK64496.1| hypothetical protein bcere0006_53830 [Bacillus cereus MM3] gi|228676519|gb|EEL31265.1| hypothetical protein bcere0019_56300 [Bacillus cereus Rock3-28] gi|228683275|gb|EEL37251.1| hypothetical protein bcere0020_53410 [Bacillus cereus Rock3-29] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N DKG+GFI +G G+DVF+H SA+ G +L EGQ VT++ Q Sbjct: 1 MEQGKVKWFNADKGFGFIERQG----GEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQ 53 >gi|116494613|ref|YP_806347.1| cold shock protein [Lactobacillus casei ATCC 334] gi|191638050|ref|YP_001987216.1| Similar to cold shock protein, CspA family [Lactobacillus casei BL23] gi|239631790|ref|ZP_04674821.1| cold-shock DNA-binding family protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066162|ref|YP_003788185.1| cold shock protein [Lactobacillus casei str. Zhang] gi|116104763|gb|ABJ69905.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC 334] gi|190712352|emb|CAQ66358.1| Similar to cold shock protein, CspA family [Lactobacillus casei BL23] gi|239526255|gb|EEQ65256.1| cold-shock DNA-binding family protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438569|gb|ADK18335.1| Cold shock protein [Lactobacillus casei str. Zhang] gi|327382135|gb|AEA53611.1| Cold-shock domain family protein [Lactobacillus casei LC2W] gi|327385278|gb|AEA56752.1| Cold-shock domain family protein [Lactobacillus casei BD-II] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT++ +D Sbjct: 1 MEHGTVKWFNAEKGYGFIT----REDGSDVFVHFSAIQGDGYKTLEEGQAVTFEVEDSD 55 >gi|34499122|ref|NP_903337.1| cold shock transcription regulator protein [Chromobacterium violaceum ATCC 12472] gi|34104973|gb|AAQ61329.1| cold shock transcription regulator protein [Chromobacterium violaceum ATCC 12472] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ V Sbjct: 4 GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEVV 53 >gi|116619951|ref|YP_822107.1| cold-shock DNA-binding protein family protein [Candidatus Solibacter usitatus Ellin6076] gi|116223113|gb|ABJ81822.1| cold-shock DNA-binding protein family [Candidatus Solibacter usitatus Ellin6076] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N KGYGFI G GDDVF+H SA+ + G +L EG V ++ Q Sbjct: 1 MKEKGTVKWFNAAKGYGFIQRSG----GDDVFVHFSAIQANGYRSLDEGAEVEFEVKQGP 56 Query: 61 ANGKYSAENLKLV 73 AEN+ LV Sbjct: 57 KG--LQAENVALV 67 >gi|168015213|ref|XP_001760145.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688525|gb|EDQ74901.1| predicted protein [Physcomitrella patens subsp. patens] Length = 187 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ + GDD+F+H++++ + G +L EG++V + V++ +G+ Sbjct: 16 GKVKWFNSSKGFGFITPD---KGGDDLFVHQTSIHAEGFRSLREGEVVEFQ-VESSEDGR 71 Query: 65 YSA 67 A Sbjct: 72 TKA 74 >gi|13475110|ref|NP_106674.1| cold-shock protein [Mesorhizobium loti MAFF303099] gi|14025861|dbj|BAB52460.1| cold-shock protein [Mesorhizobium loti MAFF303099] Length = 68 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 M G++KWYNP KG+GFI PE + D+F+H +A+ +GL L EGQ V Sbjct: 1 MESEGTVKWYNPQKGFGFIAPENGEK---DIFVHATALTRSGLSMLMEGQKV 49 >gi|319787350|ref|YP_004146825.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317465862|gb|ADV27594.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 69 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI S E+G+DVF+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFNDAKGFGFI----SRENGEDVFVHFRAIQMQGFKSLKEGQKVTFTVVQ 56 >gi|289665681|ref|ZP_06487262.1| major cold shock protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289671305|ref|ZP_06492380.1| major cold shock protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 69 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GIVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQ 56 >gi|51473848|ref|YP_067605.1| cold shock protein CspA [Rickettsia typhi str. Wilmington] gi|81826291|sp|Q68W69|CSPA_RICTY RecName: Full=Cold shock-like protein CspA gi|51460160|gb|AAU04123.1| cold shock protein CspA [Rickettsia typhi str. Wilmington] Length = 70 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI + G DVF+H+SA+ +AGL +L E Q V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQDNG---GKDVFVHKSAIEAAGLHSLKERQEVIFDI--EEKQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAINLRV 69 >gi|319892401|ref|YP_004149276.1| Cold shock protein CspA [Staphylococcus pseudintermedius HKU10-03] gi|317162097|gb|ADV05640.1| Cold shock protein CspA [Staphylococcus pseudintermedius HKU10-03] gi|323464494|gb|ADX76647.1| cold shock protein [Staphylococcus pseudintermedius ED99] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLDEGQSVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|308068467|ref|YP_003870072.1| Cold shock-like protein cspD [Paenibacillus polymyxa E681] gi|305857746|gb|ADM69534.1| Cold shock-like protein cspD [Paenibacillus polymyxa E681] Length = 65 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI +G G+DVF+H SA+ G L EGQ V ++ + + G Sbjct: 2 KGTVKWFNAEKGYGFIQMDG----GEDVFVHFSAIQGDGFKTLEEGQAVEFEITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|302879451|ref|YP_003848015.1| cold-shock DNA-binding domain-containing protein [Gallionella capsiferriformans ES-2] gi|302582240|gb|ADL56251.1| cold-shock DNA-binding domain protein [Gallionella capsiferriformans ES-2] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ +E D+F H SA+ +G +L EGQ V++D V+ Sbjct: 4 GTVKWFNDAKGFGFITPDDGSE---DLFAHFSAINMSGFKSLKEGQKVSFDVVK 54 >gi|229823989|ref|ZP_04450058.1| hypothetical protein GCWU000282_01293 [Catonella morbi ATCC 51271] gi|229786343|gb|EEP22457.1| hypothetical protein GCWU000282_01293 [Catonella morbi ATCC 51271] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI E+G+DVF+H SA+ G L EGQ+V ++ V+ A Sbjct: 1 MEQGKVKWFNSEKGFGFI----ERENGNDVFVHFSAILGEGYKTLEEGQVVNFE-VEEGA 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAANVEKL 66 >gi|297565513|ref|YP_003684485.1| cold-shock DNA-binding domain-containing protein [Meiothermus silvanus DSM 9946] gi|296849962|gb|ADH62977.1| cold-shock DNA-binding domain protein [Meiothermus silvanus DSM 9946] Length = 68 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 5/60 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI + E G DVF+H SA+ + G L EGQ V ++ V+ NGK Sbjct: 4 GTVKWFNAEKGYGFI----AQEDGPDVFVHYSAIETDGFRTLQEGQRVQFE-VEPGKNGK 58 >gi|170726448|ref|YP_001760474.1| cold-shock DNA-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169811795|gb|ACA86379.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC 51908] Length = 68 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 4/53 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55 +G++KW+N DKGYGFITPE + G D+F+H S + S G + L +GQ V +D Sbjct: 3 KGTVKWFNADKGYGFITPE---DGGKDLFVHHSEIRSGGGYATLNDGQSVEFD 52 >gi|168185844|ref|ZP_02620479.1| conserved domain protein [Clostridium botulinum C str. Eklund] gi|253681085|ref|ZP_04861888.1| conserved domain protein [Clostridium botulinum D str. 1873] gi|331270523|ref|YP_004397015.1| major cold shock protein [Clostridium botulinum BKT015925] gi|169296006|gb|EDS78139.1| conserved domain protein [Clostridium botulinum C str. Eklund] gi|253562934|gb|EES92380.1| conserved domain protein [Clostridium botulinum D str. 1873] gi|329127073|gb|AEB77018.1| major cold shock protein [Clostridium botulinum BKT015925] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI+ EG DDVF+H SA+ G L EGQ V ++ V A G Sbjct: 4 GIVKWFNAEKGFGFISVEGE----DDVFVHFSAIQGDGFKTLEEGQKVEFE-VTEGARGP 58 Query: 65 YSAENLKL 72 +A +KL Sbjct: 59 QAANVVKL 66 >gi|148234211|ref|NP_001091131.1| hypothetical protein LOC100036881 [Xenopus laevis] gi|120538253|gb|AAI29585.1| LOC100036881 protein [Xenopus laevis] Length = 131 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+ KW+N +KGYGF+TP+ + D+F+H+S + + G +L EG+ V + + ++ +GK Sbjct: 6 GTCKWFNAEKGYGFLTPD---DGSPDIFVHQSTIHADGFRSLAEGEPVEFSVITDERSGK 62 Query: 65 YSAENL 70 A ++ Sbjct: 63 LKAADV 68 >gi|91785349|ref|YP_560555.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|187925500|ref|YP_001897142.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|209516559|ref|ZP_03265413.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|296159494|ref|ZP_06842318.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|307731142|ref|YP_003908366.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1003] gi|323527488|ref|YP_004229641.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1001] gi|91689303|gb|ABE32503.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] gi|187716694|gb|ACD17918.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|209503000|gb|EEA03002.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295890202|gb|EFG69996.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|307585677|gb|ADN59075.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003] gi|323384490|gb|ADX56581.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+G G+D+F H S + + G L E Q VT++ V+ Sbjct: 1 METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRTEGFKTLQENQKVTFE-VKTGP 56 Query: 62 NGKYSAENLKLV 73 GK +A N+K V Sbjct: 57 KGKQAA-NIKPV 67 >gi|330890523|gb|EGH23184.1| cold shock domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 70 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW++ +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GTVKWFSDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 56 >gi|297159497|gb|ADI09209.1| putative cold shock protein [Streptomyces bingchenggensis BCW-1] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q VT+D Q Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINASGFRSLEENQAVTFDVTQ 54 >gi|320009867|gb|ADW04717.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ V +D Q + Sbjct: 4 GTVKWFNSEKGFGFIEQEG---GGADVFAHYSNIAAQGFRELQEGQKVNFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|302553359|ref|ZP_07305701.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] gi|302559146|ref|ZP_07311488.1| cold shock transcription regulator protein [Streptomyces griseoflavus Tu4000] gi|302470977|gb|EFL34070.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] gi|302476764|gb|EFL39857.1| cold shock transcription regulator protein [Streptomyces griseoflavus Tu4000] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G DVF+H SA+ ++G +L E Q V++D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQQVSFDVTQGPKGPQ 60 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 61 --AENVTPV 67 >gi|90419403|ref|ZP_01227313.1| possible cold-shock protein [Aurantimonas manganoxydans SI85-9A1] gi|90336340|gb|EAS50081.1| possible cold-shock protein [Aurantimonas manganoxydans SI85-9A1] Length = 210 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 2/54 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KWYN DKG+GFI + +G DVF+H +A+ +GL L +GQ VT +VQ Sbjct: 146 GTVKWYNADKGFGFIGLDDG--AGKDVFVHATALNRSGLTTLADGQKVTVRFVQ 197 >gi|311895414|dbj|BAJ27822.1| putative cold shock protein [Kitasatospora setae KM-6054] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI +G G DVF H S + S G L EGQ V +D Q + Sbjct: 4 GTVKWFNSEKGYGFIEQDG---GGADVFAHYSNIQSTGFRELIEGQKVEFDVTQGQKGPQ 60 Query: 65 YSAENLKLV 73 AEN++ + Sbjct: 61 --AENIRPI 67 >gi|311030382|ref|ZP_07708472.1| cold shock protein [Bacillus sp. m3-13] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG GDDVF+H SA+ G +L EG+ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGFGFIEVEG----GDDVFVHFSAITGDGFKSLEEGEEVSFEVVEGN 55 >gi|226228145|ref|YP_002762251.1| cold shock protein [Gemmatimonas aurantiaca T-27] gi|226091336|dbj|BAH39781.1| cold shock protein [Gemmatimonas aurantiaca T-27] Length = 70 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M G +KW+N KG+GFITP+ ++ D F+H SA+ G L EG+ V +D VQ Sbjct: 1 MRTTGKVKWFNDAKGFGFITPDDGSK---DCFVHHSAIQGGGFRTLAEGERVEFDIVQ 55 >gi|312200423|ref|YP_004020484.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] gi|311231759|gb|ADP84614.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 7/71 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI+ +G G DVF+H SA+ + G +L EGQ V ++ VQ G Sbjct: 3 QGAVKWFNAEKGFGFISVDG---GGPDVFVHFSAIVADGYKSLDEGQTVQFEIVQ----G 55 Query: 64 KYSAENLKLVP 74 + + K++P Sbjct: 56 QKGPQAEKVMP 66 >gi|299537233|ref|ZP_07050536.1| major cold shock protein [Lysinibacillus fusiformis ZC1] gi|298727474|gb|EFI68046.1| major cold shock protein [Lysinibacillus fusiformis ZC1] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI EG G+DVF+H SA+ S G L EGQ V + V+ + G Sbjct: 3 QGTVKWFNAEKGFGFIAVEG----GNDVFVHFSAIQSDGFKTLEEGQKVEFG-VEEGSRG 57 Query: 64 KYSAENLKL 72 + +KL Sbjct: 58 PQATNVVKL 66 >gi|257866254|ref|ZP_05645907.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC30] gi|257873232|ref|ZP_05652885.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC10] gi|257800212|gb|EEV29240.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC30] gi|257807396|gb|EEV36218.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC10] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N +KGYGF+ S E G D+F+H S++ G NL EGQ V Y +N+ Sbjct: 1 MQNGTVKWFNSEKGYGFV----SGEDGQDIFVHFSSIVGEGYRNLEEGQSVVYKIGENE 55 >gi|225872220|ref|YP_002753675.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] gi|225791808|gb|ACO31898.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 48/72 (66%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GF++ +G G+DVF+H +A+ + G +L EGQ V +D V+ Sbjct: 1 MEQGTVKWFNDAKGFGFLSRQG----GEDVFVHYTAIKTNGFRSLQEGQAVQFDVVKGPK 56 Query: 62 NGKYSAENLKLV 73 + A+N++++ Sbjct: 57 G--WQADNVQVL 66 >gi|315658306|ref|ZP_07911178.1| cold shock protein CspA [Staphylococcus lugdunensis M23590] gi|315496635|gb|EFU84958.1| cold shock protein CspA [Staphylococcus lugdunensis M23590] Length = 76 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 10 VMKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQSVEFEVVEGD 65 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 66 -RGPQAANVVKL 76 >gi|227509605|ref|ZP_03939654.1| CspA family cold shock transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512551|ref|ZP_03942600.1| CspA family cold shock transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227522777|ref|ZP_03952826.1| CspA family cold shock transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227084235|gb|EEI19547.1| CspA family cold shock transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227090041|gb|EEI25353.1| CspA family cold shock transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227190967|gb|EEI71034.1| CspA family cold shock transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 79 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 5/60 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ +G++KW+N DKGYGFIT T+ G DVF+H SA+ G +L EGQ VT D +D Sbjct: 12 IMKQGTVKWFNADKGYGFIT----TDDG-DVFVHFSAINKDGFKSLDEGQHVTLDVEDSD 66 >gi|27467496|ref|NP_764133.1| cold-shock protein C [Staphylococcus epidermidis ATCC 12228] gi|57866355|ref|YP_188058.1| CSD family cold shock protein [Staphylococcus epidermidis RP62A] gi|242242178|ref|ZP_04796623.1| cold-shock protein [Staphylococcus epidermidis W23144] gi|251810255|ref|ZP_04824728.1| cold-shock protein [Staphylococcus epidermidis BCM-HMP0060] gi|282875621|ref|ZP_06284492.1| cold-shock DNA-binding domain protein [Staphylococcus epidermidis SK135] gi|293368262|ref|ZP_06614891.1| cold-shock protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27315039|gb|AAO04175.1|AE016745_274 cold-shock protein C [Staphylococcus epidermidis ATCC 12228] gi|57637013|gb|AAW53801.1| cold shock protein, CSD family [Staphylococcus epidermidis RP62A] gi|242234351|gb|EES36663.1| cold-shock protein [Staphylococcus epidermidis W23144] gi|251806307|gb|EES58964.1| cold-shock protein [Staphylococcus epidermidis BCM-HMP0060] gi|281295648|gb|EFA88171.1| cold-shock DNA-binding domain protein [Staphylococcus epidermidis SK135] gi|291317685|gb|EFE58102.1| cold-shock protein [Staphylococcus epidermidis M23864:W2(grey)] gi|319401831|gb|EFV90039.1| cold shock protein cspC [Staphylococcus epidermidis FRI909] gi|329723353|gb|EGG59883.1| major cold shock protein CspA [Staphylococcus epidermidis VCU144] gi|329736857|gb|EGG73122.1| major cold shock protein CspA [Staphylococcus epidermidis VCU028] gi|329737950|gb|EGG74174.1| major cold shock protein CspA [Staphylococcus epidermidis VCU045] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E+G DVF+H SA+ G +L EGQ V +D V+ + Sbjct: 1 MNNGTVKWFNAEKGFGFI----ERENGGDVFVHFSAIVEDGYKSLEEGQSVEFDIVEGE- 55 Query: 62 NGKYSAENLKL 72 G+ +A +K+ Sbjct: 56 RGEQAANVVKM 66 >gi|330466858|ref|YP_004404601.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] gi|328809829|gb|AEB44001.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N DKG+GFIT +G G DVF+H SA+ S+G L E Q V ++ Q Sbjct: 3 QGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQSSGYRTLEENQRVEFEIAQ 54 >gi|313896973|ref|ZP_07830520.1| 7.4 kDa cold shock protein [Selenomonas sp. oral taxon 137 str. F0430] gi|320530494|ref|ZP_08031552.1| cold-shock DNA-binding domain protein [Selenomonas artemidis F0399] gi|312974420|gb|EFR39888.1| 7.4 kDa cold shock protein [Selenomonas sp. oral taxon 137 str. F0430] gi|320137327|gb|EFW29251.1| cold-shock DNA-binding domain protein [Selenomonas artemidis F0399] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ DKGYGFI S + GDDVF+H S++ G L+EGQ V +D V+ Sbjct: 3 GKVKWFSADKGYGFI----SRDDGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVE 52 >gi|313671996|ref|YP_004050107.1| cold-shock DNA-binding domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312938752|gb|ADR17944.1| cold-shock DNA-binding domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M + G++KW+N KGYGFIT + +G+DVF+H SA+ G +L EG V +D V+ Sbjct: 1 MSNTGTVKWFNDTKGYGFIT----STTGEDVFVHYSAITMGGFKSLKEGDRVKFDIVK 54 >gi|326792190|ref|YP_004310011.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] gi|326542954|gb|ADZ84813.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] Length = 65 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI + E GDDVF+H SA+ G L EGQ V ++ Q N Sbjct: 3 GTVKWFNAEKGFGFI----AREDGDDVFVHFSAIQGDGYKTLEEGQKVNFEITQ--GNRG 56 Query: 65 YSAENL 70 AEN+ Sbjct: 57 AQAENV 62 >gi|94991342|ref|YP_599442.1| cold shock protein [Streptococcus pyogenes MGAS10270] gi|94544850|gb|ABF34898.1| Cold shock protein [Streptococcus pyogenes MGAS10270] Length = 69 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI S E+G DVF H SA+ + G L EGQ V +D Sbjct: 5 QGTVKWFNAEKGFGFI----SAENGQDVFAHFSAIQTNGFKTLEEGQKVAFD 52 >gi|119718488|ref|YP_925453.1| cold-shock DNA-binding protein family protein [Nocardioides sp. JS614] gi|119539149|gb|ABL83766.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI E + GDDVF+H SA+ + G +L E Q V +D Q Sbjct: 3 QGTVKWFNAEKGFGFIAQE---DGGDDVFVHYSAIQTQGYKSLDENQKVEFDVTQGPKGP 59 Query: 64 KYSAENLKLV 73 + AEN++ + Sbjct: 60 Q--AENVRPI 67 >gi|260768242|ref|ZP_05877176.1| cold shock protein [Vibrio furnissii CIP 102972] gi|260616272|gb|EEX41457.1| cold shock protein [Vibrio furnissii CIP 102972] gi|315179943|gb|ADT86857.1| Cold shock protein [Vibrio furnissii NCTC 11218] Length = 70 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N KG+GFIT + G+DVF+H +++ S G L EGQ V++D Q Sbjct: 7 GSVKWFNETKGFGFITQD---NGGNDVFVHFASIVSEGFKTLAEGQRVSFDVEQ 57 >gi|308270407|emb|CBX27019.1| Major cold shock protein [uncultured Desulfobacterium sp.] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW++ KGYGFI E+G+DVF+H SA+ AG L+EG+ VT+D Q + Sbjct: 4 GIVKWFSNKKGYGFI----EQENGEDVFVHHSAINGAGFKTLSEGEKVTFDIEQGE 55 >gi|145588771|ref|YP_001155368.1| cold-shock DNA-binding domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047177|gb|ABP33804.1| cold-shock DNA-binding protein family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFITPE G+D+F H SA+ S G +L EGQ VT+D Sbjct: 4 GIVKWFNDAKGFGFITPE---LGGEDLFAHFSAINSNGFKSLAEGQKVTFD 51 >gi|52080703|ref|YP_079494.1| cold-shock protein [Bacillus licheniformis ATCC 14580] gi|52786076|ref|YP_091905.1| CspD [Bacillus licheniformis ATCC 14580] gi|154686439|ref|YP_001421600.1| CspD [Bacillus amyloliquefaciens FZB42] gi|296329499|ref|ZP_06871986.1| CspD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674824|ref|YP_003866496.1| RNA-helicase co-factor [Bacillus subtilis subsp. spizizenii str. W23] gi|308173984|ref|YP_003920689.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus amyloliquefaciens DSM 7] gi|311068704|ref|YP_003973627.1| RNA-helicase co-factor [Bacillus atrophaeus 1942] gi|319645338|ref|ZP_07999571.1| cold shock protein cspD [Bacillus sp. BT1B_CT2] gi|52003914|gb|AAU23856.1| cold-shock protein [Bacillus licheniformis ATCC 14580] gi|52348578|gb|AAU41212.1| CspD [Bacillus licheniformis ATCC 14580] gi|154352290|gb|ABS74369.1| CspD [Bacillus amyloliquefaciens FZB42] gi|296153381|gb|EFG94243.1| CspD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413068|gb|ADM38187.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus subtilis subsp. spizizenii str. W23] gi|307606848|emb|CBI43219.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus amyloliquefaciens DSM 7] gi|310869221|gb|ADP32696.1| RNA-helicase co-factor [Bacillus atrophaeus 1942] gi|317393147|gb|EFV73941.1| cold shock protein cspD [Bacillus sp. BT1B_CT2] gi|328553088|gb|AEB23580.1| RNA-helicase co-factor [Bacillus amyloliquefaciens TA208] gi|328912139|gb|AEB63735.1| Cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus amyloliquefaciens LL3] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG GDDVF+H +A+ G +L EGQ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGFGFIEVEG----GDDVFVHFTAIEGEGYKSLEEGQEVSFEIVEGN 55 >gi|225873881|ref|YP_002755340.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] gi|225792075|gb|ACO32165.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 41/57 (71%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KG+GFI S ++G+DVF+H SA++S G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFI----SRQNGEDVFVHYSAISSNGFRSLQEGQAVQFNVVK 53 >gi|82703364|ref|YP_412930.1| cold-shock DNA-binding domain-containing protein [Nitrosospira multiformis ATCC 25196] gi|82411429|gb|ABB75538.1| cold-shock DNA-binding protein family [Nitrosospira multiformis ATCC 25196] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ +E D+F H SA+ +G L EGQ VT++ Q Sbjct: 4 GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMSGFKTLKEGQKVTFEVTQ 54 >gi|300173985|ref|YP_003773151.1| cold shock protein [Leuconostoc gasicomitatum LMG 18811] gi|299888364|emb|CBL92332.1| Cold shock protein [Leuconostoc gasicomitatum LMG 18811] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KGYGF+T E+G+DVF H SA+ G L EGQ V ++ +D Sbjct: 1 MEKGTVKWFNGEKGYGFVTR----ENGEDVFAHFSAIQGDGFKTLEEGQAVEFEVETSD 55 >gi|152977400|ref|YP_001376917.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026152|gb|ABS23922.1| putative cold-shock DNA-binding domain protein [Bacillus cytotoxicus NVH 391-98] Length = 65 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDD+F+H SA+ G L EGQ V +D V + A G Sbjct: 2 QGRVKWFNAEKGFGFI----EREDGDDIFVHFSAIQQEGYKTLEEGQNVEFDIV-DGARG 56 Query: 64 KYSAENLKL 72 + +KL Sbjct: 57 PQAVNVVKL 65 >gi|229825450|ref|ZP_04451519.1| hypothetical protein GCWU000182_00809 [Abiotrophia defectiva ATCC 49176] gi|229790013|gb|EEP26127.1| hypothetical protein GCWU000182_00809 [Abiotrophia defectiva ATCC 49176] Length = 71 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G +KW+N +KGYGFIT + GDDVF+H SA+ G L EGQ VT++ Sbjct: 1 MNTGVVKWFNSEKGYGFITND---NGGDDVFVHFSAINVEGFKTLNEGQKVTFE 51 >gi|254382460|ref|ZP_04997819.1| cold shock protein [Streptomyces sp. Mg1] gi|194341364|gb|EDX22330.1| cold shock protein [Streptomyces sp. Mg1] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E QLV +D Q Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINASGFRSLEENQLVNFDVTQ 54 >gi|300697692|ref|YP_003748353.1| Cold shock protein, DNA-binding (cspX ) [Ralstonia solanacearum CFBP2957] gi|299074416|emb|CBJ53966.1| Cold shock protein, DNA-binding (cspX ) [Ralstonia solanacearum CFBP2957] Length = 128 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ Q Sbjct: 61 IMATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQ 115 >gi|304320970|ref|YP_003854613.1| Cold shock protein [Parvularcula bermudensis HTCC2503] gi|303299872|gb|ADM09471.1| Cold shock protein [Parvularcula bermudensis HTCC2503] Length = 69 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI PE + DVF+H +A+ +GL L EG VT++ ++ +GK Sbjct: 4 GTVKFFNTQKGFGFIQPE---DGSSDVFVHATALERSGLAPLNEGDKVTFETARDKRSGK 60 Query: 65 YSAENLKL 72 + +++ Sbjct: 61 MAVSTIQM 68 >gi|323141266|ref|ZP_08076162.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT 12067] gi|322414223|gb|EFY05046.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT 12067] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KGYGFI EG G D+F+H S + S G L EG V +D +Q D Sbjct: 3 GKVKWFNAEKGYGFIQREG----GKDLFVHFSGIKSEGFKTLEEGWNVEFDVIQGD 54 >gi|294633722|ref|ZP_06712280.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292830364|gb|EFF88715.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ V +D Q Sbjct: 4 GTVKWFNAEKGFGFIEQEG---GGADVFAHYSNIAAQGFRELLEGQKVNFDVAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|194292705|ref|YP_002008612.1| cold shock protein, transcription antiterminator [Cupriavidus taiwanensis LMG 19424] gi|193226609|emb|CAQ72560.1| cold shock protein, transcription antiterminator [Cupriavidus taiwanensis LMG 19424] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G++KW+N KG+GFITP+ E G+D+F H SA+ +G +L EGQ V Y Sbjct: 1 METGTVKWFNDAKGFGFITPD---EGGNDLFAHFSAIEGSGFKSLKEGQKVRY 50 >gi|116749630|ref|YP_846317.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698694|gb|ABK17882.1| cold-shock DNA-binding protein family [Syntrophobacter fumaroxidans MPOB] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KGYGFI T SG DVF+H S++ G L+EGQ VT++ ++ A G Sbjct: 4 GRVKWFNDQKGYGFI----ETGSGPDVFVHHSSIEGVGFKTLSEGQEVTFE-IEKGAKGP 58 Query: 65 YSAENLKL 72 + KL Sbjct: 59 QAVRVKKL 66 >gi|309388475|gb|ADO76355.1| cold-shock DNA-binding protein family [Halanaerobium praevalens DSM 2228] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M++ G++KW++ KGYGFI E GDDVF+H SA+ G L + Q V ++ V+ D Sbjct: 1 MIYTGTVKWFDAKKGYGFI----EREDGDDVFVHFSAIEDEGFKTLEDEQEVEFEIVEGD 56 Query: 61 ANGKYSAENL 70 + AEN+ Sbjct: 57 RGPQ--AENV 64 >gi|218898929|ref|YP_002447340.1| hypothetical protein BCG9842_B1369 [Bacillus cereus G9842] gi|218545380|gb|ACK97774.1| conserved domain protein [Bacillus cereus G9842] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N +KG+GFI EG G+DVF+H SA+ G +L EGQ VT++ Q Sbjct: 1 MEQGKVKWFNAEKGFGFIEREG----GEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQ 53 >gi|29827434|ref|NP_822068.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29604533|dbj|BAC68603.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +AS+G L EGQ V +D Q + Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIASSGFRELQEGQKVNFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|323483950|ref|ZP_08089323.1| hypothetical protein HMPREF9474_01072 [Clostridium symbiosum WAL-14163] gi|323693454|ref|ZP_08107665.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14673] gi|323402666|gb|EGA94991.1| hypothetical protein HMPREF9474_01072 [Clostridium symbiosum WAL-14163] gi|323502509|gb|EGB18360.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14673] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +++G++KW+N KG+GFI E +G+D+F+H S +A G +L +GQ VTYD Q + Sbjct: 1 MNKGTVKWFNSQKGFGFICGE----NGEDIFVHFSGLAMDGYKSLEDGQEVTYDIAQGN 55 >gi|302671806|ref|YP_003831766.1| cold shock domain protein CspD1 [Butyrivibrio proteoclasticus B316] gi|302396279|gb|ADL35184.1| cold shock domain protein CspD1 [Butyrivibrio proteoclasticus B316] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +++G++KW+N KGYGFI S E+G+DVF+H S + G +L EG V YD +Q + Sbjct: 1 MNKGTVKWFNNQKGYGFI----SDEAGNDVFVHYSGLNMEGFKSLEEGASVEYDVIQGE 55 >gi|296134263|ref|YP_003641510.1| cold-shock DNA-binding domain protein [Thermincola sp. JR] gi|296032841|gb|ADG83609.1| cold-shock DNA-binding domain protein [Thermincola potens JR] Length = 65 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E G DVF+H SA+ G L EGQ V ++ V+ A G Sbjct: 3 GKVKWFNQEKGFGFI----EREDGGDVFVHFSAIQEEGFKTLAEGQEVEFEIVEG-ARGP 57 Query: 65 YSAENLKL 72 +A +KL Sbjct: 58 QAANVVKL 65 >gi|296111480|ref|YP_003621862.1| cold-shock domain family protein [Leuconostoc kimchii IMSNU 11154] gi|295833012|gb|ADG40893.1| cold-shock domain family protein [Leuconostoc kimchii IMSNU 11154] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KGYGF+T E+G+DVF H SA+ G L EGQ V ++ +D Sbjct: 1 MEKGTVKWFNGEKGYGFVTR----ENGEDVFAHFSAIQGDGFKTLEEGQAVEFEVETSD 55 >gi|182434255|ref|YP_001821974.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|239946053|ref|ZP_04697990.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998] gi|239992524|ref|ZP_04713188.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379] gi|291449502|ref|ZP_06588892.1| cold shock protein scoF [Streptomyces roseosporus NRRL 15998] gi|326774768|ref|ZP_08234033.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|178462771|dbj|BAG17291.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|291352449|gb|EFE79353.1| cold shock protein scoF [Streptomyces roseosporus NRRL 15998] gi|326655101|gb|EGE39947.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S + S G L EGQ VT+D Q + Sbjct: 4 GTVKWFNSEKGFGFIAQDGG---GPDVFAHYSNINSTGFRELQEGQAVTFDITQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|169349912|ref|ZP_02866850.1| hypothetical protein CLOSPI_00651 [Clostridium spiroforme DSM 1552] gi|169293480|gb|EDS75613.1| hypothetical protein CLOSPI_00651 [Clostridium spiroforme DSM 1552] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFIT + E G D+F+H SA+ + G L EGQ+V ++ + D Sbjct: 4 GKVKWFNQEKGFGFITND---EDGKDIFVHFSAINAEGFKTLEEGQIVEFEINETD 56 >gi|242074456|ref|XP_002447164.1| hypothetical protein SORBIDRAFT_06g029650 [Sorghum bicolor] gi|241938347|gb|EES11492.1| hypothetical protein SORBIDRAFT_06g029650 [Sorghum bicolor] Length = 215 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N DKG+GFITP+ ++E D+F+H+S++ G +L EG+ V Y Sbjct: 8 GTVKWFNVDKGFGFITPDDASE---DLFVHQSSIKCDGYRSLKEGEAVEY 54 >gi|297586963|ref|ZP_06945608.1| cold shock protein CspA [Finegoldia magna ATCC 53516] gi|297574944|gb|EFH93663.1| cold shock protein CspA [Finegoldia magna ATCC 53516] Length = 81 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFIT E + D+F+H+SA+ G L EGQ V+YD V+ Sbjct: 15 IMSNGTVKWFNSTKGFGFITGEDNK----DIFVHQSAIQQEGFRTLEEGQKVSYD-VEAS 69 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 70 EKGDRAVNVVKL 81 >gi|163749964|ref|ZP_02157208.1| putative Cold shock-like protein [Shewanella benthica KT99] gi|161330238|gb|EDQ01219.1| putative Cold shock-like protein [Shewanella benthica KT99] Length = 70 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N DKG+GF+T + G DVF+H A+AS G L EGQ V+++ Q + Sbjct: 7 GTVKWFNEDKGFGFLTQD---NGGADVFVHFRAIASEGFKTLDEGQKVSFEVEQGE 59 >gi|149242121|pdb|2I5M|X Chain X, Crystal Structure Of Bacillus Subtilis Cold Shock Protein Cspb Variant A46k S48r Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V ++ V+ + Sbjct: 3 EGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQKVRFEIVEGN 55 >gi|331005216|ref|ZP_08328609.1| Cold shock protein CspC [gamma proteobacterium IMCC1989] gi|330420959|gb|EGG95232.1| Cold shock protein CspC [gamma proteobacterium IMCC1989] Length = 68 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI ESG DVF H SA+ +G LTEGQ V + Q + Sbjct: 6 GTVKWFNESKGFGFI----EQESGPDVFAHFSAIQGSGFKTLTEGQKVEFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 62 --AENINPV 68 >gi|314935260|ref|ZP_07842613.1| conserved domain protein [Staphylococcus hominis subsp. hominis C80] gi|313656595|gb|EFS20334.1| conserved domain protein [Staphylococcus hominis subsp. hominis C80] Length = 75 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 8/73 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E GDDVF+H S +A+ G L EGQ V +D + Sbjct: 10 MNNGTVKWFNAEKGFGFI----EREDGDDVFVHFSGIATDGYKTLEEGQKVEFDITE--- 62 Query: 62 NGKYSAENLKLVP 74 G+ + +VP Sbjct: 63 -GQRGEQATNVVP 74 >gi|13472380|ref|NP_103947.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|260467122|ref|ZP_05813301.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|14023126|dbj|BAB49733.1| probable cold shock protein [Mesorhizobium loti MAFF303099] gi|259029134|gb|EEW30431.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] Length = 70 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N KG+GFITP+ + DVF+H SAV ++GL L +GQ VT+D + D Sbjct: 1 MPQTGTVKFFNHAKGFGFITPD---DGAKDVFVHISAVQASGLPGLEDGQKVTFD-TEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KRGK 60 >gi|317126004|ref|YP_004100116.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] gi|315590092|gb|ADU49389.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G++KW+N +KG+GFI +G G DVF+H SA+ S G L EGQ V +D Q Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GADVFVHYSAIESGGYRELQEGQKVEFDVTQG 55 >gi|290968845|ref|ZP_06560382.1| cold-shock DNA-binding domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290781141|gb|EFD93732.1| cold-shock DNA-binding domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 65 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KGYGFI +G G DVF+H SA+ G +L EGQ V +D VQ A G Sbjct: 3 GKVKWFSAEKGYGFIEKDG----GGDVFVHFSAIQEDGFKSLAEGQEVEFD-VQEGARGP 57 Query: 65 YSAENLK 71 +A +K Sbjct: 58 QAANVVK 64 >gi|238919761|ref|YP_002933276.1| hypothetical protein NT01EI_1865 [Edwardsiella ictaluri 93-146] gi|238869330|gb|ACR69041.1| conserved domain protein [Edwardsiella ictaluri 93-146] Length = 69 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP + DVF+H SA+ S G L EGQ V + +Q+ G Sbjct: 6 GQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSDGFKTLAEGQQVEFS-IQDSPRGP 61 Query: 65 YSAENLKL 72 +A+ + L Sbjct: 62 AAADVIAL 69 >gi|83647927|ref|YP_436362.1| cold shock protein [Hahella chejuensis KCTC 2396] gi|83635970|gb|ABC31937.1| Cold shock protein [Hahella chejuensis KCTC 2396] Length = 158 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+NP+KG+GFIT EG GDD+F+H ++ G +L +GQ V + V+ D Sbjct: 95 GIVKWFNPNKGFGFITREG----GDDIFVHFRSIRGRGHRSLRQGQKVRFRTVEGD 146 >gi|256822193|ref|YP_003146156.1| cold-shock DNA-binding domain-containing protein [Kangiella koreensis DSM 16069] gi|256795732|gb|ACV26388.1| cold-shock DNA-binding domain protein [Kangiella koreensis DSM 16069] Length = 69 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E+G DVF H SA+AS+G L EGQ V ++ D Sbjct: 6 KGTVKWFNEAKGFGFI----EQENGPDVFAHFSAIASSGFKTLAEGQQV--EFTLTDGQK 59 Query: 64 KYSAENL 70 AEN+ Sbjct: 60 GPQAENI 66 >gi|210617492|ref|ZP_03291595.1| hypothetical protein CLONEX_03817 [Clostridium nexile DSM 1787] gi|210149279|gb|EEA80288.1| hypothetical protein CLONEX_03817 [Clostridium nexile DSM 1787] Length = 68 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW++ KG+GFIT E +SG D+F+H S +A G L EGQ V++D Q Sbjct: 1 MNTGTVKWFDSQKGFGFITNE---QSGKDIFVHFSGIALNGFKTLEEGQQVSFDTTQ 54 >gi|170785227|pdb|3CAM|A Chain A, Crystal Structure Of The Cold Shock Domain Protein From Neisseria Meningitidis gi|170785228|pdb|3CAM|B Chain B, Crystal Structure Of The Cold Shock Domain Protein From Neisseria Meningitidis Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D V GK Sbjct: 4 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINXEGFKTLKEGQRVSFD-VTTGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|269792592|ref|YP_003317496.1| cold-shock DNA-binding domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100227|gb|ACZ19214.1| cold-shock DNA-binding domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 83 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFIT E G DVF+H SA+ G L EGQ V+++ V+ Sbjct: 21 GVVKWFNATKGYGFITAE----DGKDVFVHFSAIQQEGFKTLEEGQRVSFEVVE 70 >gi|225075510|ref|ZP_03718709.1| hypothetical protein NEIFLAOT_00523 [Neisseria flavescens NRL30031/H210] gi|269213456|ref|ZP_05982011.2| cold shock transcription regulator protein [Neisseria cinerea ATCC 14685] gi|284800098|ref|ZP_05985718.2| cold shock transcription regulator protein [Neisseria subflava NJ9703] gi|224953145|gb|EEG34354.1| hypothetical protein NEIFLAOT_00523 [Neisseria flavescens NRL30031/H210] gi|269146157|gb|EEZ72575.1| cold shock transcription regulator protein [Neisseria cinerea ATCC 14685] gi|284795950|gb|EFC51297.1| cold shock transcription regulator protein [Neisseria subflava NJ9703] Length = 80 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D V Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMDGFKTLKEGQRVSFD-VTTG 68 Query: 61 ANGKYSA 67 GK +A Sbjct: 69 PKGKQAA 75 >gi|81428762|ref|YP_395762.1| cold shock protein CspA family protein [Lactobacillus sakei subsp. sakei 23K] gi|78610404|emb|CAI55454.1| Similar to cold shock protein, CspA family [Lactobacillus sakei subsp. sakei 23K] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFIT E G DVF H SA+ G +L EGQ V++D V++ Sbjct: 1 MNNGTVKWFNADKGFGFITG----EDGKDVFAHFSAIQGDGYKSLDEGQAVSFD-VEDSD 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQATNIVKL 66 >gi|115375489|ref|ZP_01462749.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|310821373|ref|YP_003953731.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1] gi|2493774|sp|P72366|CSPA_STIAD RecName: Full=Cold shock-like protein CspA gi|1616777|gb|AAB16850.1| cold shock-like protein [Stigmatella aurantiaca DW4/3-1] gi|115367532|gb|EAU66507.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|309394445|gb|ADO71904.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1] Length = 68 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFIT +G G+DVF H SA+ G L EGQ V ++ + Sbjct: 4 GTVKWFNDAKGFGFITQDG---GGEDVFCHHSAINMDGFRTLQEGQKVEFEVTRGPKG-- 58 Query: 65 YSAENLKLVP 74 A+N++ +P Sbjct: 59 LQAQNVRSIP 68 >gi|222153624|ref|YP_002562801.1| cold shock protein CspC [Streptococcus uberis 0140J] gi|222114437|emb|CAR43247.1| cold shock protein CspC [Streptococcus uberis 0140J] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFIT E+G DVF H S + S G +L EGQ V++D Q Sbjct: 4 GTVKWFNAEKGFGFITQ----ENGTDVFAHFSEIQSNGFKSLDEGQKVSFDLEQ 53 >gi|70726510|ref|YP_253424.1| major cold shock protein CspA [Staphylococcus haemolyticus JCSC1435] gi|223043278|ref|ZP_03613325.1| conserved domain protein [Staphylococcus capitis SK14] gi|239637089|ref|ZP_04678083.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|289550810|ref|YP_003471714.1| Cold shock protein CspA [Staphylococcus lugdunensis HKU09-01] gi|314933579|ref|ZP_07840944.1| conserved domain protein [Staphylococcus caprae C87] gi|118572258|sp|Q4L6A7|CSPA_STAHJ RecName: Full=Cold shock protein CspA gi|68447234|dbj|BAE04818.1| major cold shock protein CspA [Staphylococcus haemolyticus JCSC1435] gi|222443489|gb|EEE49587.1| conserved domain protein [Staphylococcus capitis SK14] gi|239597439|gb|EEQ79942.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|289180342|gb|ADC87587.1| Cold shock protein CspA [Staphylococcus lugdunensis HKU09-01] gi|313653729|gb|EFS17486.1| conserved domain protein [Staphylococcus caprae C87] gi|330684708|gb|EGG96406.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQSVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|84497345|ref|ZP_00996167.1| putative cold shock protein [Janibacter sp. HTCC2649] gi|84382233|gb|EAP98115.1| putative cold shock protein [Janibacter sp. HTCC2649] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G++KW+N +KG+GFI +G G DVF+H SA+ S G L EGQ V +D Q Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GADVFVHYSAIESGGYRELQEGQKVEFDVTQG 55 >gi|115373612|ref|ZP_01460907.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|310824928|ref|YP_003957286.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1] gi|115369315|gb|EAU68255.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|309398000|gb|ADO75459.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFIT +G +G+D+F H SA+ + G +L EGQ V +D + Sbjct: 4 GTVKWFNDAKGFGFITQDG---AGEDLFCHHSAIQADGFRSLQEGQKVQFDVARGPKG-- 58 Query: 65 YSAENLKLV 73 A+N++ V Sbjct: 59 LQAQNVRPV 67 >gi|293376790|ref|ZP_06623011.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis PC909] gi|325838186|ref|ZP_08166522.1| cold shock protein CspB [Turicibacter sp. HGF1] gi|292644572|gb|EFF62661.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis PC909] gi|325490857|gb|EGC93158.1| cold shock protein CspB [Turicibacter sp. HGF1] Length = 66 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N DKGYGFIT ++GD+VF H S + S G L EGQ V ++ Q Sbjct: 4 GTVKWFNADKGYGFIT----VDNGDEVFAHFSEIQSDGFKTLEEGQKVEFEITQ 53 >gi|310639812|ref|YP_003944570.1| cold shock-like protein csplb [Paenibacillus polymyxa SC2] gi|309244762|gb|ADO54329.1| Cold shock-like protein cspLB [Paenibacillus polymyxa SC2] Length = 66 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF+H SA+ G +L EGQ V ++ V + Sbjct: 1 MQTGTVKWFNAEKGFGFIEVEG----GSDVFVHFSAIQGEGFKSLDEGQRVEFNVV--EG 54 Query: 62 NGKYSAENL 70 N AEN+ Sbjct: 55 NRGPQAENV 63 >gi|300121901|emb|CBK22475.2| Cold-shock protein DNA-binding [Blastocystis hominis] Length = 101 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V+ G KW+N KGYGFI P+ ++ D+F+H+S++ S+G L EG+ V +D V + Sbjct: 22 VYTGKCKWFNNKKGYGFIIPDPGSDLTTDIFVHQSSIKSSGFRFLKEGESVEFD-VTDGQ 80 Query: 62 NGKYS 66 GK + Sbjct: 81 KGKVA 85 >gi|218780300|ref|YP_002431618.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761684|gb|ACL04150.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 66 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 6/68 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +G G DVF+H SA+ S+G +L EG VT+D ++ A G Sbjct: 4 GTVKWFNDQKGFGFIEQDG----GPDVFVHHSAINSSGFRSLNEGDRVTFD-IEQGAKGP 58 Query: 65 YSAENLKL 72 SA+N+ + Sbjct: 59 -SAKNVTV 65 >gi|193788570|ref|NP_001123330.1| zinc finger protein ZF(CCHC)-17 [Ciona intestinalis] gi|93003148|tpd|FAA00157.1| TPA: zinc finger protein [Ciona intestinalis] Length = 193 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 35/52 (67%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G+ KW+N +GYGFITP+ S++ DVF+H+S++ G +L EG V + Y Sbjct: 29 GNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSIDMEGFRSLQEGDRVKFWY 80 >gi|217969672|ref|YP_002354906.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] gi|217506999|gb|ACK54010.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ +E D+F H SA+ +G +L EG+ V++D Q Sbjct: 4 GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAITMSGFKSLKEGEKVSFDVTQ 54 >gi|182439288|ref|YP_001827007.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|282862092|ref|ZP_06271155.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|302559563|ref|ZP_07311905.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] gi|326779940|ref|ZP_08239205.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|178467804|dbj|BAG22324.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|282563117|gb|EFB68656.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|302477181|gb|EFL40274.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] gi|320011359|gb|ADW06209.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] gi|326660273|gb|EGE45119.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ V++D Q G+ Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GADVFAHYSNIATSGFRELQEGQKVSFDVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 57 KGPQAENIVP 66 >gi|290963038|ref|YP_003494220.1| cold shock protein [Streptomyces scabiei 87.22] gi|260652564|emb|CBG75697.1| putative cold shock protein [Streptomyces scabiei 87.22] Length = 94 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +++ G L EGQ V +D Q Sbjct: 31 GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNISAQGFRELLEGQKVNFDIAQGQKGP- 86 Query: 65 YSAENLKLV 73 +AEN+ LV Sbjct: 87 -TAENIVLV 94 >gi|284029203|ref|YP_003379134.1| cold-shock DNA-binding domain-containing protein [Kribbella flavida DSM 17836] gi|283808496|gb|ADB30335.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM 17836] Length = 66 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 RG++KW+N DKGYGF+ EG DDVF+H S + S G L +GQ V ++ V Sbjct: 3 RGTVKWFNADKGYGFLAVEGQ----DDVFVHWSKIVSDGYKTLEDGQQVEFEVV 52 >gi|91792287|ref|YP_561938.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217] gi|91714289|gb|ABE54215.1| cold-shock DNA-binding protein family [Shewanella denitrificans OS217] Length = 70 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFITP+ G DVF+H ++ S G L EGQ V+++ Q Sbjct: 7 GLVKWFNEDKGFGFITPD---NGGADVFVHFRSITSEGFKTLAEGQKVSFEVEQ 57 >gi|294636209|ref|ZP_06714624.1| conserved domain protein [Edwardsiella tarda ATCC 23685] gi|291090490|gb|EFE23051.1| conserved domain protein [Edwardsiella tarda ATCC 23685] Length = 97 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP + DVF+H SA+ S G L EGQ V + +Q+ G Sbjct: 34 GQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSDGFKTLAEGQQVEFS-IQDSPRGP 89 Query: 65 YSAENLKL 72 +A+ + L Sbjct: 90 AAADVVAL 97 >gi|167583194|ref|ZP_02376068.1| cold-shock DNA-binding domain protein [Burkholderia thailandensis TXDOH] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N +KG+GFITP+G GDD+F H S + G L EGQ V+Y+ Sbjct: 4 GTVKWFNDNKGFGFITPDG---GGDDLFAHFSEIRGDGFKTLAEGQKVSYE 51 >gi|152999996|ref|YP_001365677.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS185] gi|160874617|ref|YP_001553933.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS195] gi|217974041|ref|YP_002358792.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS223] gi|304409581|ref|ZP_07391201.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183] gi|307303939|ref|ZP_07583692.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175] gi|151364614|gb|ABS07614.1| putative cold-shock DNA-binding domain protein [Shewanella baltica OS185] gi|160860139|gb|ABX48673.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195] gi|217499176|gb|ACK47369.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223] gi|304352099|gb|EFM16497.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183] gi|306912837|gb|EFN43260.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175] gi|315266858|gb|ADT93711.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678] Length = 69 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V++D Q Sbjct: 6 GVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQ 56 >gi|326439837|ref|ZP_08214571.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 3 QGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELREGQRVSFDVTQGQKGP 59 Query: 64 KYSAENL 70 + AEN+ Sbjct: 60 Q--AENI 64 >gi|239929627|ref|ZP_04686580.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291437949|ref|ZP_06577339.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|294630786|ref|ZP_06709346.1| cold shock transcription regulator protein [Streptomyces sp. e14] gi|291340844|gb|EFE67800.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|292834119|gb|EFF92468.1| cold shock transcription regulator protein [Streptomyces sp. e14] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q V++D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINATGFRSLEENQQVSFDVTQGPKGPQ 60 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 61 --AENVTPV 67 >gi|207724747|ref|YP_002255144.1| hypothetical transcription regulator protein [Ralstonia solanacearum MolK2] gi|206589970|emb|CAQ36931.1| hypothetical transcription regulator protein [Ralstonia solanacearum MolK2] Length = 131 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ Q Sbjct: 64 IMATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQ 118 >gi|15676734|ref|NP_273879.1| cold-shock domain-contain protein [Neisseria meningitidis MC58] gi|59800853|ref|YP_207565.1| CspA [Neisseria gonorrhoeae FA 1090] gi|121634616|ref|YP_974861.1| putative transcriptional regulator [Neisseria meningitidis FAM18] gi|194098153|ref|YP_002001201.1| cold-shock domain family protein [Neisseria gonorrhoeae NCCP11945] gi|239998604|ref|ZP_04718528.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|240013727|ref|ZP_04720640.1| transcriptional regulator [Neisseria gonorrhoeae DGI18] gi|240016165|ref|ZP_04722705.1| transcriptional regulator [Neisseria gonorrhoeae FA6140] gi|240080309|ref|ZP_04724852.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|240112520|ref|ZP_04727010.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|240115260|ref|ZP_04729322.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|240117547|ref|ZP_04731609.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|240120797|ref|ZP_04733759.1| transcriptional regulator [Neisseria gonorrhoeae PID24-1] gi|240123102|ref|ZP_04736058.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|240125353|ref|ZP_04738239.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|240127806|ref|ZP_04740467.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|254493324|ref|ZP_05106495.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|254804709|ref|YP_003082930.1| putative cold-shock protein [Neisseria meningitidis alpha14] gi|260440922|ref|ZP_05794738.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|268594462|ref|ZP_06128629.1| cold-shock domain-containing protein [Neisseria gonorrhoeae 35/02] gi|268596458|ref|ZP_06130625.1| cold-shock domain-containing protein [Neisseria gonorrhoeae FA19] gi|268598590|ref|ZP_06132757.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268600943|ref|ZP_06135110.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268603250|ref|ZP_06137417.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268681730|ref|ZP_06148592.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268683957|ref|ZP_06150819.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|268686202|ref|ZP_06153064.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291044245|ref|ZP_06569954.1| cold-shock domain-containing protein [Neisseria gonorrhoeae DGI2] gi|293399442|ref|ZP_06643595.1| cold shock protein (beta-ribbon, CspA family) [Neisseria gonorrhoeae F62] gi|298368622|ref|ZP_06979940.1| cold shock transcription regulator protein [Neisseria sp. oral taxon 014 str. F0314] gi|313668692|ref|YP_004048976.1| transcriptional regulator [Neisseria lactamica ST-640] gi|319637942|ref|ZP_07992708.1| transcriptional regulator [Neisseria mucosa C102] gi|7226073|gb|AAF41249.1| cold-shock domain family protein [Neisseria meningitidis MC58] gi|59717748|gb|AAW89153.1| putative cold shock protein [Neisseria gonorrhoeae FA 1090] gi|120866322|emb|CAM10063.1| putative transcriptional regulator [Neisseria meningitidis FAM18] gi|193933443|gb|ACF29267.1| cold-shock domain family protein [Neisseria gonorrhoeae NCCP11945] gi|226512364|gb|EEH61709.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|254668251|emb|CBA05095.1| putative cold-shock protein [Neisseria meningitidis alpha14] gi|254670465|emb|CBA06133.1| cold-shock DNA-binding domain [Neisseria meningitidis alpha153] gi|254672382|emb|CBA05647.1| cold-shock DNA-binding domain [Neisseria meningitidis alpha275] gi|261392810|emb|CAX50391.1| putative cold shock protein [Neisseria meningitidis 8013] gi|268547851|gb|EEZ43269.1| cold-shock domain-containing protein [Neisseria gonorrhoeae 35/02] gi|268550246|gb|EEZ45265.1| cold-shock domain-containing protein [Neisseria gonorrhoeae FA19] gi|268582721|gb|EEZ47397.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268585074|gb|EEZ49750.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268587381|gb|EEZ52057.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268622014|gb|EEZ54414.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268624241|gb|EEZ56641.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|268626486|gb|EEZ58886.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291011139|gb|EFE03135.1| cold-shock domain-containing protein [Neisseria gonorrhoeae DGI2] gi|291610011|gb|EFF39133.1| cold shock protein (beta-ribbon, CspA family) [Neisseria gonorrhoeae F62] gi|298282625|gb|EFI24112.1| cold shock transcription regulator protein [Neisseria sp. oral taxon 014 str. F0314] gi|308389012|gb|ADO31332.1| cold-shock domain-containing protein [Neisseria meningitidis alpha710] gi|309379406|emb|CBX21973.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006154|emb|CBN87615.1| putative transcriptional regulator [Neisseria lactamica 020-06] gi|317401097|gb|EFV81752.1| transcriptional regulator [Neisseria mucosa C102] gi|319410197|emb|CBY90535.1| putative cold shock protein [Neisseria meningitidis WUE 2594] gi|325127943|gb|EGC50845.1| cold-shock DNA-binding domain protein [Neisseria meningitidis N1568] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D V GK Sbjct: 4 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFD-VTTGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|325261145|ref|ZP_08127883.1| conserved domain protein [Clostridium sp. D5] gi|324032599|gb|EGB93876.1| conserved domain protein [Clostridium sp. D5] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 40/57 (70%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N KG+GFIT + + G+DVF+H S +AS G +L EGQ V++D + Sbjct: 1 MNNGTVKWFNAQKGFGFITNDAN---GEDVFVHFSGIASDGYKSLEEGQKVSFDITE 54 >gi|295112263|emb|CBL29013.1| cold-shock DNA-binding protein family [Synergistetes bacterium SGP1] Length = 66 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFIT + G DVF+H SA+ G L EGQ V+++ V N G Sbjct: 3 QGTVKWFNESKGYGFIT----ADEGKDVFVHYSAIQGDGFKTLAEGQKVSFEIV-NGEKG 57 Query: 64 KYSAENLKL 72 +A KL Sbjct: 58 PQAANVEKL 66 >gi|302557419|ref|ZP_07309761.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302475037|gb|EFL38130.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A G L EGQ VT+D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDGG---GADVFAHYSNIAGQGFRELLEGQKVTFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|149182147|ref|ZP_01860630.1| CspB [Bacillus sp. SG-1] gi|148850179|gb|EDL64346.1| CspB [Bacillus sp. SG-1] Length = 65 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 5/64 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG +DVF+H SA+ G L EGQ V+++ +++ A G Sbjct: 3 QGKVKWFNAEKGFGFIEVEGQ----EDVFVHFSAIQGEGFKTLEEGQTVSFE-IEDGARG 57 Query: 64 KYSA 67 +A Sbjct: 58 PQAA 61 >gi|237749127|ref|ZP_04579607.1| cold-shock DNA-binding domain-containing protein [Oxalobacter formigenes OXCC13] gi|229380489|gb|EEO30580.1| cold-shock DNA-binding domain-containing protein [Oxalobacter formigenes OXCC13] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITPE + G+D+F H SA+ G L EGQ V ++ Q Sbjct: 4 GTVKWFNDSKGFGFITPE---DGGEDLFAHFSAINMNGFKTLKEGQKVQFEVTQ 54 >gi|254522559|ref|ZP_05134614.1| cold-shock domain family protein [Stenotrophomonas sp. SKA14] gi|219720150|gb|EED38675.1| cold-shock domain family protein [Stenotrophomonas sp. SKA14] Length = 69 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI S ++G+DVF+H A+ + G +L EGQ VT++ VQ Sbjct: 7 GTVKWFNDAKGFGFI----SRQNGEDVFVHFRAIETHGFKSLKEGQSVTFEVVQ 56 >gi|218900031|ref|YP_002448442.1| cold shock protein CspD [Bacillus cereus G9842] gi|228903378|ref|ZP_04067509.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|228910715|ref|ZP_04074526.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|228942044|ref|ZP_04104587.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228967983|ref|ZP_04128992.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228974975|ref|ZP_04135536.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981568|ref|ZP_04141865.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|229020116|ref|ZP_04176895.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|229026344|ref|ZP_04182702.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|229175579|ref|ZP_04303089.1| Cold shock protein cspB [Bacillus cereus MM3] gi|218540595|gb|ACK92989.1| cold shock protein CspD [Bacillus cereus G9842] gi|228607975|gb|EEK65287.1| Cold shock protein cspB [Bacillus cereus MM3] gi|228734944|gb|EEL85581.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|228741182|gb|EEL91401.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|228778247|gb|EEM26517.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|228784828|gb|EEM32846.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791707|gb|EEM39300.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228817713|gb|EEM63795.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228848983|gb|EEM93826.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|228856339|gb|EEN00868.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|326942646|gb|AEA18542.1| cold shock protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 66 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 MQTGKVKWFNGEKGFGFIEVEG----GEDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGN 55 >gi|220918462|ref|YP_002493766.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956316|gb|ACL66700.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFIT +G G+DVF H +A+ + G +L EGQ V +D + Sbjct: 4 GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQAEGFRSLAEGQKVEFDVTK 54 >gi|37725743|gb|AAO32341.1| cold shock protein 1 [Streptomyces sp. AA8321] Length = 65 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q VT+D Q Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINASGFRSLEENQQVTFDVTQ 54 >gi|319787046|ref|YP_004146521.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317465558|gb|ADV27290.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 69 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP ESG D+F+H ++ +G +L EGQ V++ VQ Sbjct: 7 GTVKWFNDAKGFGFITP----ESGADLFVHFRSIQGSGFKSLQEGQKVSFIVVQ 56 >gi|307328611|ref|ZP_07607784.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306885723|gb|EFN16736.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E Q VT+D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINATGFRSLEENQAVTFDVTQGPKGPQ 60 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 61 --AENVSPV 67 >gi|292487397|ref|YP_003530269.1| cold shock-like protein CspG [Erwinia amylovora CFBP1430] gi|292898644|ref|YP_003538013.1| cold shock protein [Erwinia amylovora ATCC 49946] gi|291198492|emb|CBJ45600.1| cold shock protein [Erwinia amylovora ATCC 49946] gi|291552816|emb|CBA19861.1| Cold shock-like protein cspG (CPS-G) [Erwinia amylovora CFBP1430] gi|312171502|emb|CBX79760.1| Cold shock-like protein cspG (CPS-G) [Erwinia amylovora ATCC BAA-2158] Length = 70 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++PDKG+GFI+P T+ DVF+H SA+ + G L EGQ V + ++N G Sbjct: 7 GLVKWFSPDKGFGFISP---TDGSKDVFVHFSAIQNGGFKTLEEGQKVEFT-IENGQKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|163751591|ref|ZP_02158812.1| cold shock domain family protein [Shewanella benthica KT99] gi|294141301|ref|YP_003557279.1| cold shock domain family protein [Shewanella violacea DSS12] gi|161328503|gb|EDP99657.1| cold shock domain family protein [Shewanella benthica KT99] gi|293327770|dbj|BAJ02501.1| cold shock domain family protein [Shewanella violacea DSS12] Length = 68 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI ESG DVF+H A+ S G L EGQ V + Q + Sbjct: 6 GVVKWFNSDKGFGFI----EQESGPDVFVHFRAIQSDGFKTLDEGQKVQFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ +V Sbjct: 62 --AENVTIV 68 >gi|261212918|ref|ZP_05927202.1| cold shock protein CspG [Vibrio sp. RC341] gi|262402962|ref|ZP_06079522.1| cold shock transcriptional regulator CspA [Vibrio sp. RC586] gi|260837983|gb|EEX64660.1| cold shock protein CspG [Vibrio sp. RC341] gi|262350461|gb|EEY99594.1| cold shock transcriptional regulator CspA [Vibrio sp. RC586] Length = 70 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N KG+GFITP+ G DVF+H +++AS G+ L EGQ V + Q Sbjct: 7 GSVKWFNESKGFGFITPD---IGGSDVFVHFNSIASGGVKTLFEGQKVNFSIEQ 57 >gi|328883551|emb|CCA56790.1| cold shock protein [Streptomyces venezuelae ATCC 10712] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ V++D Q Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIAASGFRELQEGQKVSFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|229121251|ref|ZP_04250482.1| Cold shock-like protein cspB [Bacillus cereus 95/8201] gi|228662096|gb|EEL17705.1| Cold shock-like protein cspB [Bacillus cereus 95/8201] Length = 77 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG+ DDVF+H SA+ G L EGQ V++D + + G Sbjct: 14 QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 68 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 69 PQAANVVKL 77 >gi|224824174|ref|ZP_03697282.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] gi|224603593|gb|EEG09768.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ E GDD+F H S + + G L E Q V++D Sbjct: 4 GTVKWFNDSKGFGFITPD---EGGDDIFAHFSQIKANGFKTLAENQRVSFD 51 >gi|332974564|gb|EGK11484.1| cold shock transcription regulator protein [Kingella kingae ATCC 23330] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D V GK Sbjct: 4 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFD-VTTGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|330983366|gb|EGH81469.1| cold shock domain family protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 55 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N +KG+GFITP ESG D+F+H A+ G +L EGQ VT+ V Sbjct: 7 GTVKWFNDEKGFGFITP----ESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAV 55 >gi|170725719|ref|YP_001759745.1| cold-shock DNA-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169811066|gb|ACA85650.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC 51908] Length = 70 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI+ E G DVF+H A+AS G L EGQ V+++ Q Sbjct: 7 GTVKWFNEEKGFGFISQE---NGGADVFVHFRAIASDGFKTLAEGQKVSFEVEQ 57 >gi|322434962|ref|YP_004217174.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321162689|gb|ADW68394.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 66 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 40/57 (70%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KG+GFI S ++G+DVF H SA+ S+G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFI----SRQNGEDVFAHYSAITSSGFKSLQEGQAVQFNVVK 53 >gi|118477138|ref|YP_894289.1| cold-shock DNA-binding protein family protein [Bacillus thuringiensis str. Al Hakam] gi|228926734|ref|ZP_04089802.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932984|ref|ZP_04095847.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|118416363|gb|ABK84782.1| cold-shock DNA-binding protein family [Bacillus thuringiensis str. Al Hakam] gi|228826585|gb|EEM72356.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832847|gb|EEM78416.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 77 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG+ DDVF+H SA+ G L EGQ V++D + + G Sbjct: 14 QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 68 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 69 PQAANVVKL 77 >gi|134301076|ref|YP_001114572.1| cold-shock DNA-binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134053776|gb|ABO51747.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens MI-1] Length = 65 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI EG G DVF H SA+ G L EGQ V +D V+ N Sbjct: 2 QGTVKWFNAEKGFGFIEVEG----GKDVFAHFSAITGDGYKTLEEGQRVEFDVVE--GNR 55 Query: 64 KYSAENL 70 AEN+ Sbjct: 56 GPQAENI 62 >gi|330982957|gb|EGH81060.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 50 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/46 (52%), Positives = 34/46 (73%), Gaps = 3/46 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ Sbjct: 7 GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDGFKSLKEGQ 49 >gi|311031676|ref|ZP_07709766.1| cold shock protein [Bacillus sp. m3-13] Length = 65 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFI +G DDVF+H SA+ G +L EGQ VT++ Q Sbjct: 3 EGKVKWFNAEKGFGFIEVDGQ----DDVFVHFSAIQGEGFKSLEEGQTVTFEIEQ 53 >gi|299144112|ref|ZP_07037192.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518597|gb|EFI42336.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 65 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFIT E G DVF H S + G L EGQ V +D V+ + Sbjct: 2 KGKVKWFNGEKGFGFIT----AEDGKDVFAHFSQIQKEGFKTLEEGQDVEFDVVEKEKGP 57 Query: 64 KYSAENLKLV 73 + AEN+ ++ Sbjct: 58 Q--AENIVIL 65 >gi|224033259|gb|ACN35705.1| unknown [Zea mays] Length = 110 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 3/52 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG++KW+N KG+GFI+PE +E D+F+H+S++ S G +L EG+ V + Sbjct: 7 QRGTVKWFNDTKGFGFISPEDGSE---DLFVHQSSIKSEGFRSLAEGEEVEF 55 >gi|90414568|ref|ZP_01222542.1| putative cold shock-like protein [Photobacterium profundum 3TCK] gi|90414570|ref|ZP_01222544.1| putative cold shock-like protein [Photobacterium profundum 3TCK] gi|90324375|gb|EAS40941.1| putative cold shock-like protein [Photobacterium profundum 3TCK] gi|90324377|gb|EAS40943.1| putative cold shock-like protein [Photobacterium profundum 3TCK] Length = 69 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V++D Q Sbjct: 6 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQ 56 >gi|309812766|ref|ZP_07706505.1| cold shock-like protein CspE [Dermacoccus sp. Ellin185] gi|308433283|gb|EFP57176.1| cold shock-like protein CspE [Dermacoccus sp. Ellin185] Length = 67 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N +KG+GFI +G G DVF+H SA+ + G +L EGQ V ++ Q D Sbjct: 3 QGTVKWFNAEKGFGFIEQDG---GGADVFVHFSAIQTNGYRSLDEGQRVEFEITQGD 56 >gi|291616468|ref|YP_003519210.1| CspB [Pantoea ananatis LMG 20103] gi|291151498|gb|ADD76082.1| CspB [Pantoea ananatis LMG 20103] gi|327392905|dbj|BAK10327.1| cold shock-like protein CspB [Pantoea ananatis AJ13355] Length = 70 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW+N +KG+GFI+P+ ++ DVF+H SA+ +L EGQ V + V+N A G Sbjct: 6 RGTVKWFNAEKGFGFISPQDGSK---DVFVHFSAIQGTDFRSLDEGQQVEF-TVENGAKG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVVGL 70 >gi|255523658|ref|ZP_05390625.1| cold-shock DNA-binding domain protein [Clostridium carboxidivorans P7] gi|255512713|gb|EET88986.1| cold-shock DNA-binding domain protein [Clostridium carboxidivorans P7] Length = 65 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFIT E G DVF+H S + S G +L EGQ V++D V+ Sbjct: 3 GTVKWFNGEKGFGFITGE----DGKDVFVHFSQIKSEGYKSLEEGQEVSFDAVKGPKG-- 56 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 57 LQAENVTIL 65 >gi|169786884|ref|YP_001705697.1| cold shock protein [Acinetobacter baumannii SDF] gi|260558148|ref|ZP_05830357.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] gi|169150801|emb|CAP02995.1| cold shock protein [Acinetobacter baumannii] gi|260408376|gb|EEX01685.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] Length = 71 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 V +G++KW+N KG+GFI ESG DVF H S +AS+G L EGQ V + Q Sbjct: 6 VVKGTVKWFNETKGFGFI----QQESGPDVFAHFSEIASSGFKTLFEGQQVEFSVAQ 58 >gi|86157661|ref|YP_464446.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|197123033|ref|YP_002134984.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|220917823|ref|YP_002493127.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|85774172|gb|ABC81009.1| cold-shock DNA-binding protein family [Anaeromyxobacter dehalogenans 2CP-C] gi|196172882|gb|ACG73855.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|219955677|gb|ACL66061.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 66 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI+ EG G+DVF+H +A+ G L EG+ V +D Q Sbjct: 4 GTVKWFNDAKGYGFISQEG----GEDVFVHHTAIQMDGFRTLKEGERVEFDVTQ 53 >gi|90023400|ref|YP_529227.1| cold-shock DNA-binding protein family protein [Saccharophagus degradans 2-40] gi|89953000|gb|ABD83015.1| cold-shock DNA-binding protein family [Saccharophagus degradans 2-40] Length = 69 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +SG DVF H SA+AS+G L EGQ V + Q + Sbjct: 7 GTVKWFNESKGFGFI----EQKSGPDVFAHFSAIASSGFKTLAEGQQVEFTVTQGQKGPQ 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 --AENI 66 >gi|56416469|ref|YP_153543.1| cold shock protein [Anaplasma marginale str. St. Maries] gi|222474838|ref|YP_002563253.1| cold shock protein (cspA) [Anaplasma marginale str. Florida] gi|269959118|ref|YP_003328907.1| putative cold-shock protein [Anaplasma centrale str. Israel] gi|56387701|gb|AAV86288.1| cold shock protein [Anaplasma marginale str. St. Maries] gi|222418974|gb|ACM48997.1| cold shock protein (cspA) [Anaplasma marginale str. Florida] gi|269848949|gb|ACZ49593.1| putative cold-shock protein [Anaplasma centrale str. Israel] Length = 92 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 12/81 (14%) Query: 5 GSIKWYNPDKGYGFITPEGSTE---------SGD-DVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ +KGYGFI +GS + GD DVF+H +++ + + NL EGQ V Y Sbjct: 14 GHVKWFSVEKGYGFICKDGSDDGKSGGASFGRGDKDVFVHITSLQRSRIDNLREGQRVRY 73 Query: 55 DYVQNDANGKYSAENLKLVPK 75 +++NGK SA NL+++ + Sbjct: 74 QL--DESNGKVSAVNLEVLSE 92 >gi|126173707|ref|YP_001049856.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS155] gi|125996912|gb|ABN60987.1| cold-shock DNA-binding protein family [Shewanella baltica OS155] Length = 69 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V++D Q Sbjct: 6 GVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQ 56 >gi|54301716|ref|YP_131709.1| putative cold shock-like protein [Photobacterium profundum SS9] gi|46915136|emb|CAG21909.1| putative Cold shock-like protein [Photobacterium profundum SS9] Length = 79 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 16 GLVKWFNEDKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 66 >gi|222099844|ref|YP_002534412.1| Cold shock-like protein [Thermotoga neapolitana DSM 4359] gi|221572234|gb|ACM23046.1| Cold shock-like protein [Thermotoga neapolitana DSM 4359] Length = 66 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 5/64 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++ KGYGFIT + G DVF+H SA+ G L EGQ+V ++ VQ G Sbjct: 2 RGKVKWFDAKKGYGFITK----DEGGDVFVHWSAIEMEGFKTLKEGQVVEFE-VQEGKKG 56 Query: 64 KYSA 67 +A Sbjct: 57 PQAA 60 >gi|16801058|ref|NP_471326.1| hypothetical protein lin1992 [Listeria innocua Clip11262] gi|16803918|ref|NP_465403.1| hypothetical protein lmo1879 [Listeria monocytogenes EGD-e] gi|46908111|ref|YP_014500.1| cold-shock domain-contain protein [Listeria monocytogenes serotype 4b str. F2365] gi|116873314|ref|YP_850095.1| cold shock-like protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217963969|ref|YP_002349647.1| hypothetical protein LMHCC_0678 [Listeria monocytogenes HCC23] gi|224500231|ref|ZP_03668580.1| hypothetical protein LmonF1_11339 [Listeria monocytogenes Finland 1988] gi|224501322|ref|ZP_03669629.1| hypothetical protein LmonFR_02165 [Listeria monocytogenes FSL R2-561] gi|226224482|ref|YP_002758589.1| cold shock protein [Listeria monocytogenes Clip81459] gi|254826079|ref|ZP_05231080.1| cspD [Listeria monocytogenes FSL J1-194] gi|254827237|ref|ZP_05231924.1| cspD [Listeria monocytogenes FSL N3-165] gi|254831521|ref|ZP_05236176.1| cold shock protein [Listeria monocytogenes 10403S] gi|254852782|ref|ZP_05242130.1| cspD [Listeria monocytogenes FSL R2-503] gi|254899425|ref|ZP_05259349.1| cold shock protein [Listeria monocytogenes J0161] gi|254912436|ref|ZP_05262448.1| cspD [Listeria monocytogenes J2818] gi|254931951|ref|ZP_05265310.1| cspD [Listeria monocytogenes HPB2262] gi|254936763|ref|ZP_05268460.1| cspD [Listeria monocytogenes F6900] gi|254992229|ref|ZP_05274419.1| cold shock protein [Listeria monocytogenes FSL J2-064] gi|255025065|ref|ZP_05297051.1| cold shock protein [Listeria monocytogenes FSL J1-208] gi|255521585|ref|ZP_05388822.1| cold shock protein [Listeria monocytogenes FSL J1-175] gi|284802324|ref|YP_003414189.1| hypothetical protein LM5578_2080 [Listeria monocytogenes 08-5578] gi|284995466|ref|YP_003417234.1| hypothetical protein LM5923_2031 [Listeria monocytogenes 08-5923] gi|289435225|ref|YP_003465097.1| cold shock protein CspD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290892995|ref|ZP_06555984.1| cspD protein [Listeria monocytogenes FSL J2-071] gi|300763811|ref|ZP_07073808.1| hypothetical protein LMHG_10648 [Listeria monocytogenes FSL N1-017] gi|315282896|ref|ZP_07871202.1| conserved domain protein [Listeria marthii FSL S4-120] gi|16411332|emb|CAC99957.1| cspD [Listeria monocytogenes EGD-e] gi|16414493|emb|CAC97222.1| cspD [Listeria innocua Clip11262] gi|46881381|gb|AAT04677.1| cold-shock domain family protein [Listeria monocytogenes serotype 4b str. F2365] gi|116742192|emb|CAK21316.1| cold shock-like protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217333239|gb|ACK39033.1| conserved domain protein [Listeria monocytogenes HCC23] gi|225876944|emb|CAS05653.1| Putative cold shock protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599620|gb|EEW12945.1| cspD [Listeria monocytogenes FSL N3-165] gi|258606109|gb|EEW18717.1| cspD [Listeria monocytogenes FSL R2-503] gi|258609359|gb|EEW21967.1| cspD [Listeria monocytogenes F6900] gi|284057886|gb|ADB68827.1| hypothetical protein LM5578_2080 [Listeria monocytogenes 08-5578] gi|284060933|gb|ADB71872.1| hypothetical protein LM5923_2031 [Listeria monocytogenes 08-5923] gi|289171469|emb|CBH28013.1| cold shock protein CspD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290557355|gb|EFD90880.1| cspD protein [Listeria monocytogenes FSL J2-071] gi|293583503|gb|EFF95535.1| cspD [Listeria monocytogenes HPB2262] gi|293590418|gb|EFF98752.1| cspD [Listeria monocytogenes J2818] gi|293595320|gb|EFG03081.1| cspD [Listeria monocytogenes FSL J1-194] gi|300515547|gb|EFK42597.1| hypothetical protein LMHG_10648 [Listeria monocytogenes FSL N1-017] gi|307571461|emb|CAR84640.1| cold-shock domain family protein [Listeria monocytogenes L99] gi|313608061|gb|EFR84139.1| conserved domain protein [Listeria monocytogenes FSL F2-208] gi|313613460|gb|EFR87298.1| conserved domain protein [Listeria marthii FSL S4-120] gi|313618218|gb|EFR90291.1| conserved domain protein [Listeria innocua FSL S4-378] gi|313623202|gb|EFR93457.1| conserved domain protein [Listeria innocua FSL J1-023] gi|313632692|gb|EFR99666.1| conserved domain protein [Listeria seeligeri FSL N1-067] gi|313637242|gb|EFS02750.1| conserved domain protein [Listeria seeligeri FSL S4-171] gi|328466229|gb|EGF37386.1| cold shock protein CspD [Listeria monocytogenes 1816] gi|328473596|gb|EGF44433.1| cold shock protein CspD [Listeria monocytogenes 220] gi|332312320|gb|EGJ25415.1| Cold shock-like protein CspD [Listeria monocytogenes str. Scott A] Length = 66 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KGYGFI +G G+D+F+H +A+ G +L EGQ VT++ V+ + Sbjct: 1 MQNGKVKWFNNEKGYGFIESDG----GEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGN 55 >gi|312144553|ref|YP_003995999.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] gi|311905204|gb|ADQ15645.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] Length = 67 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M++ G +KW++ KGYGFI E GDDVF+H SA+ G L + Q V ++ V+ D Sbjct: 1 MIYTGKVKWFDAKKGYGFI----EREDGDDVFVHFSAIEDEGFKTLEDEQEVEFEIVEGD 56 >gi|86156680|ref|YP_463465.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|197120682|ref|YP_002132633.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|220915394|ref|YP_002490698.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|85773191|gb|ABC80028.1| cold-shock DNA-binding protein family [Anaeromyxobacter dehalogenans 2CP-C] gi|196170531|gb|ACG71504.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|219953248|gb|ACL63632.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 67 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFIT + + G+DVF H SA++ G +L EGQ V +D V+ Sbjct: 4 GTVKWFNDAKGFGFITQD---DGGEDVFCHYSAISGDGFKSLAEGQKVEFDVVK 54 >gi|29831363|ref|NP_825997.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29608478|dbj|BAC72532.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 67 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI EG G DVF+H SA+ ++G +L E Q V++D Q Sbjct: 4 GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQSVSFDVTQ 54 >gi|15606511|ref|NP_213891.1| cold shock protein [Aquifex aeolicus VF5] gi|6225213|sp|O67327|CSP_AQUAE RecName: Full=Cold shock-like protein gi|2983729|gb|AAC07291.1| cold shock protein [Aquifex aeolicus VF5] Length = 70 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M RG++KW++ DKGYGFIT E ++ DVF+H + + G L +GQ V +D V+ D Sbjct: 1 MSFRGTVKWFSKDKGYGFITRE---DTNADVFVHFTDIQMEGFKTLQKGQKVEFDVVE-D 56 Query: 61 ANGKYSAENLKLV 73 G A+N++++ Sbjct: 57 TKGP-RAKNVRVL 68 >gi|212712933|ref|ZP_03321061.1| hypothetical protein PROVALCAL_04031 [Providencia alcalifaciens DSM 30120] gi|212684411|gb|EEB43939.1| hypothetical protein PROVALCAL_04031 [Providencia alcalifaciens DSM 30120] Length = 81 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE ++ DVF+H SA++ G L EGQ V ++ + A G Sbjct: 17 KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAISGDGFKTLAEGQKVEFE-ITEGAKG 72 Query: 64 KYSAENLKL 72 +A + L Sbjct: 73 PSAANVVSL 81 >gi|255027485|ref|ZP_05299471.1| cold shock protein [Listeria monocytogenes FSL J2-003] Length = 65 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KGYGFI +G G+D+F+H +A+ G +L EGQ VT++ V+ + Sbjct: 1 MQNGKVKWFNNEKGYGFIESDG----GEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGN 55 >gi|160933904|ref|ZP_02081291.1| hypothetical protein CLOLEP_02766 [Clostridium leptum DSM 753] gi|156866577|gb|EDO59949.1| hypothetical protein CLOLEP_02766 [Clostridium leptum DSM 753] Length = 70 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GF++ + G+DVF+H SA+ G +L EGQ VT+D + Sbjct: 1 MNNGTVKWFNSEKGFGFLSND---NGGEDVFVHFSAIVGEGFKSLAEGQKVTFDTETDPK 57 Query: 62 NGK 64 N K Sbjct: 58 NSK 60 >gi|90021439|ref|YP_527266.1| cold-shock DNA-binding protein family protein [Saccharophagus degradans 2-40] gi|89951039|gb|ABD81054.1| cold-shock DNA-binding protein family [Saccharophagus degradans 2-40] Length = 75 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTE--SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G++KW+N +GYGFIT G+TE GDD+F+H ++ G +L EGQ V + Q D Sbjct: 6 KGTVKWFNNARGYGFITA-GATEEKEGDDIFVHYRSIRGEGYKSLNEGQAVEFSLQQGDK 64 Query: 62 NGKYSAENLKLV 73 + A+++ L+ Sbjct: 65 G--FHADDVALI 74 >gi|23098034|ref|NP_691500.1| cold shock protein [Oceanobacillus iheyensis HTE831] gi|22776259|dbj|BAC12535.1| cold shock protein [Oceanobacillus iheyensis HTE831] Length = 65 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E GDDVF+H SA+ + G L EGQ V ++ V+ + G Sbjct: 3 GKVKWFNAEKGFGFI----EREDGDDVFVHFSAIQADGFKTLEEGQDVEFEIVEGN-RGP 57 Query: 65 YSAENLKL 72 +A ++L Sbjct: 58 QAANVVRL 65 >gi|331702398|ref|YP_004399357.1| cold-shock DNA-binding domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129741|gb|AEB74294.1| cold-shock DNA-binding domain protein [Lactobacillus buchneri NRRL B-30929] Length = 67 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 5/59 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKGYGFIT T+ G DVF+H SA+ G +L EGQ VT D +D Sbjct: 1 MKQGTVKWFNADKGYGFIT----TDDG-DVFVHFSAINKDGFKSLDEGQKVTLDVEDSD 54 >gi|296116126|ref|ZP_06834744.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769] gi|295977232|gb|EFG83992.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769] Length = 208 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT---EGQLVTYDYVQND 60 RG +KWYN KG+GFITPE G D+F+H SA+ +GL LT EGQ V+ Sbjct: 141 RGIVKWYNATKGFGFITPE---SGGKDIFVHASALERSGLTGLTSLSEGQTANVQVVEGQ 197 Query: 61 ANGKYSA 67 + +A Sbjct: 198 KGPEAAA 204 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ E S SG DVFLH +A+ G ++ G + Q + Sbjct: 38 TVKWFNSEKGFGFV--ELSDGSG-DVFLHANALNPTGFETVSPGSTLVVRIGQGPKGRQV 94 Query: 66 SA 67 +A Sbjct: 95 AA 96 >gi|78044182|ref|YP_359029.1| cold shock protein CspC [Carboxydothermus hydrogenoformans Z-2901] gi|77996297|gb|ABB15196.1| cold shock protein CspC [Carboxydothermus hydrogenoformans Z-2901] Length = 65 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KGYGFI E G DVF+H SA+ G L EGQ V ++ V+ G Sbjct: 2 QGKVKWFDPAKGYGFI----EREDGGDVFVHFSAIKGNGFKTLEEGQRVEFNIVEG-TRG 56 Query: 64 KYSAENLKL 72 +A+ +KL Sbjct: 57 PQAADVVKL 65 >gi|90409803|ref|ZP_01217820.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|90329156|gb|EAS45413.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] Length = 70 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 7 GLVKWFNEDKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 57 >gi|83647395|ref|YP_435830.1| cold shock protein [Hahella chejuensis KCTC 2396] gi|83635438|gb|ABC31405.1| Cold shock protein [Hahella chejuensis KCTC 2396] Length = 69 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI ESG DVF H SA+ +G LTEGQ V + Q + Sbjct: 7 GTVKWFNESKGFGFI----EQESGPDVFAHFSAITGSGFKTLTEGQKVEFTITQGQKGPQ 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 --AENI 66 >gi|148270113|ref|YP_001244573.1| cold-shock DNA-binding domain-containing protein [Thermotoga petrophila RKU-1] gi|170288941|ref|YP_001739179.1| cold-shock DNA-binding domain-containing protein [Thermotoga sp. RQ2] gi|281412545|ref|YP_003346624.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila RKU-10] gi|147735657|gb|ABQ46997.1| cold-shock DNA-binding protein family [Thermotoga petrophila RKU-1] gi|170176444|gb|ACB09496.1| cold-shock DNA-binding domain protein [Thermotoga sp. RQ2] gi|281373648|gb|ADA67210.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila RKU-10] Length = 66 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++ KGYGFIT + G DVF+H SA+ G L EGQ+V ++ +Q G Sbjct: 2 RGKVKWFDAKKGYGFITK----DEGGDVFVHWSAIEMEGFKTLKEGQVVEFE-IQEGKKG 56 Query: 64 KYSAENLKLV 73 +A ++K+V Sbjct: 57 PQAA-HVKVV 65 >gi|77362297|ref|YP_341871.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125] gi|76877208|emb|CAI89425.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125] Length = 68 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFI ESG DVF H SA+ S G L EGQ V + Q + Sbjct: 6 GSVKWFNEAKGFGFI----EQESGPDVFAHFSAITSDGFKTLAEGQRVQFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ + Sbjct: 62 --AENIVCI 68 >gi|114562869|ref|YP_750382.1| cold-shock DNA-binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114334162|gb|ABI71544.1| cold-shock DNA-binding protein family [Shewanella frigidimarina NCIMB 400] gi|149675700|dbj|BAF64729.1| cold shock protein [Shewanella livingstonensis] Length = 68 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI ESG DVF+H A+ S G L EGQ V++ Q + Sbjct: 6 GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ +V Sbjct: 62 --AENVSIV 68 >gi|90023198|ref|YP_529025.1| cold-shock DNA-binding protein family protein [Saccharophagus degradans 2-40] gi|89952798|gb|ABD82813.1| cold-shock DNA-binding protein family [Saccharophagus degradans 2-40] Length = 69 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +SG DVF H SA+AS+G L EGQ V + Q + Sbjct: 7 GTVKWFNESKGFGFI----EQKSGPDVFAHFSAIASSGFKTLAEGQQVEFTVTQGQKGPQ 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 --AENI 66 >gi|310778654|ref|YP_003966987.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] gi|309747977|gb|ADO82639.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] Length = 66 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFIT +E G DVF H S + G L EG+ VT++ Q Sbjct: 3 KGTVKWFNGEKGFGFIT----SEEGTDVFAHFSEIQKDGFKTLEEGEQVTFEITQGQKGP 58 Query: 64 KYSAENLKLV 73 + A N+K V Sbjct: 59 Q--ASNIKTV 66 >gi|229106451|ref|ZP_04236811.1| hypothetical protein bcere0019_53380 [Bacillus cereus Rock3-28] gi|228676997|gb|EEL31483.1| hypothetical protein bcere0019_53380 [Bacillus cereus Rock3-28] Length = 66 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G +KW+N DKG+GFI +G G+DVF+H SA+ G +L EGQ VT++ Sbjct: 1 MEQGKVKWFNADKGFGFIERQG----GEDVFVHFSAIQIDGYKSLDEGQSVTFE 50 >gi|134100407|ref|YP_001106068.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291007339|ref|ZP_06565312.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|133913030|emb|CAM03143.1| cold-shock DNA-binding domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 67 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP+G G DVF H SA+ + G L E Q V ++ Q Sbjct: 4 GTVKWFNAEKGFGFITPDG---GGADVFAHYSAIDATGFRTLDENQRVEFEIAQ 54 >gi|74272681|gb|ABA01136.1| putative nucleic acid-binding protein [Chlamydomonas incerta] Length = 226 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 46/70 (65%), Gaps = 4/70 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N KG+GFITP G G+D+F+H++ + S G +L EG+ V ++ V+ Sbjct: 5 LRQQGTVKWFNATKGFGFITPGG---GGEDLFVHQTNINSEGFRSLREGEAVEFE-VEAG 60 Query: 61 ANGKYSAENL 70 +G+ A N+ Sbjct: 61 PDGRSKAVNV 70 >gi|15644431|ref|NP_229483.1| cold shock protein [Thermotoga maritima MSB8] gi|6225214|sp|O54310|CSP_THEMA RecName: Full=Cold shock-like protein gi|16974798|pdb|1G6P|A Chain A, Solution Nmr Structure Of The Cold Shock Protein From The Hyperthermophilic Bacterium Thermotoga Maritima gi|4982259|gb|AAD36750.1|AE001809_2 cold shock protein [Thermotoga maritima MSB8] gi|2894098|emb|CAA72105.1| cold shock protein [Thermotoga maritima MSB8] Length = 66 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++ KGYGFIT + G DVF+H SA+ G L EGQ+V ++ +Q G Sbjct: 2 RGKVKWFDSKKGYGFITK----DEGGDVFVHWSAIEMEGFKTLKEGQVVEFE-IQEGKKG 56 Query: 64 KYSAENLKLV 73 +A ++K+V Sbjct: 57 PQAA-HVKVV 65 >gi|313671995|ref|YP_004050106.1| cold-shock DNA-binding domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312938751|gb|ADR17943.1| cold-shock DNA-binding domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 67 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M + G++KW+N KGYGFIT + +G+DVF+H SA+ G +L EG V +D V+ Sbjct: 1 MSNTGTVKWFNDTKGYGFIT----SSTGEDVFVHYSAITMDGFKSLKEGDKVNFDIVK 54 >gi|253584039|ref|ZP_04861237.1| cold shock protein CspC [Fusobacterium varium ATCC 27725] gi|251834611|gb|EES63174.1| cold shock protein CspC [Fusobacterium varium ATCC 27725] Length = 66 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N DKG+GFI S E G+D F+H S + S G +L EGQ VT++ + + Sbjct: 3 KGTVKWFNKDKGFGFI----SGEDGNDYFVHYSNINSKGFRSLEEGQAVTFEVTEGE 55 >gi|253988509|ref|YP_003039865.1| cold shock-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637909|emb|CAR66538.1| cold shock-like protein (cps-i) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779959|emb|CAQ83120.1| cold shock-like protein (cps-i) [Photorhabdus asymbiotica] Length = 71 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI+P+ ++ DVF+H SA+ S L EGQ V++ ++N A G Sbjct: 7 GSVKWFNNDKGFGFISPKNGSK---DVFVHYSAIQSNNFKTLEEGQEVSFS-IENGAKG 61 >gi|194366422|ref|YP_002029032.1| cold-shock DNA-binding domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194349226|gb|ACF52349.1| cold-shock DNA-binding domain protein [Stenotrophomonas maltophilia R551-3] Length = 69 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI S ++G+DVF+H A+ + G +L EGQ V+++ VQ Sbjct: 7 GTVKWFNDAKGFGFI----SRQNGEDVFVHFRAIETQGFKSLKEGQAVSFEVVQ 56 >gi|319400562|gb|EFV88792.1| cold shock protein cspD [Staphylococcus epidermidis FRI909] Length = 66 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N DKG+GFI ++G+DVF+H S +A G +L EGQ V +D V+ Sbjct: 1 MNNGTVKWFNADKGFGFI----ERDNGNDVFVHYSGIAGEGYKSLEEGQNVDFDIVE 53 >gi|169825043|ref|YP_001692654.1| cold shock protein [Finegoldia magna ATCC 29328] gi|302379354|ref|ZP_07267841.1| cold shock protein CspA [Finegoldia magna ACS-171-V-Col3] gi|167831848|dbj|BAG08764.1| cold shock protein [Finegoldia magna ATCC 29328] gi|302312699|gb|EFK94693.1| cold shock protein CspA [Finegoldia magna ACS-171-V-Col3] Length = 66 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFIT E + D+F+H+SA+ G L EGQ V+YD +D Sbjct: 4 GTVKWFNSTKGFGFITGEDNK----DIFVHQSAIQEEGFRTLEEGQKVSYDVEASD 55 >gi|254994694|ref|ZP_05276884.1| cold shock protein (cspA) [Anaplasma marginale str. Mississippi] gi|255002811|ref|ZP_05277775.1| cold shock protein (cspA) [Anaplasma marginale str. Puerto Rico] gi|255003942|ref|ZP_05278743.1| cold shock protein (cspA) [Anaplasma marginale str. Virginia] Length = 91 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 12/81 (14%) Query: 5 GSIKWYNPDKGYGFITPEGSTE---------SGD-DVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ +KGYGFI +GS + GD DVF+H +++ + + NL EGQ V Y Sbjct: 13 GHVKWFSVEKGYGFICKDGSDDGKSGGASFGRGDKDVFVHITSLQRSRIDNLREGQRVRY 72 Query: 55 DYVQNDANGKYSAENLKLVPK 75 +++NGK SA NL+++ + Sbjct: 73 QL--DESNGKVSAVNLEVLSE 91 >gi|223043029|ref|ZP_03613077.1| conserved domain protein [Staphylococcus capitis SK14] gi|314933099|ref|ZP_07840464.1| conserved domain protein [Staphylococcus caprae C87] gi|222443883|gb|EEE49980.1| conserved domain protein [Staphylococcus capitis SK14] gi|313653249|gb|EFS17006.1| conserved domain protein [Staphylococcus caprae C87] Length = 66 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E+G DVF+H SA+ G +L EGQ V +D V+ + Sbjct: 1 MNNGTVKWFNSEKGFGFI----ERENGGDVFVHFSAIVEDGYKSLEEGQNVEFDIVEGE- 55 Query: 62 NGKYSAENLKL 72 G+ +A +K+ Sbjct: 56 RGEQAANVVKM 66 >gi|220911667|ref|YP_002486976.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|219858545|gb|ACL38887.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] Length = 68 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N +KGYGFIT +G SGDD+F+H SA+ G L EGQ V + Sbjct: 4 GTVKWFNAEKGYGFITVDG---SGDDIFVHWSAIQGEGYRALDEGQRVELE 51 >gi|77410386|ref|ZP_00786777.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae COH1] gi|77171004|gb|EAO74482.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae COH1] Length = 64 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 5/59 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW+N +KG+GFI S+E+G DVF H S + G L EGQ VT+D +Q+ N Sbjct: 3 QGTVKWFNSEKGFGFI----SSETGTDVFAHFSEIKVDGFKTLEEGQKVTFD-IQDGQN 56 >gi|262279162|ref|ZP_06056947.1| predicted protein [Acinetobacter calcoaceticus RUH2202] gi|262259513|gb|EEY78246.1| predicted protein [Acinetobacter calcoaceticus RUH2202] Length = 69 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 8/71 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI ESG DVF H +AS+G L EGQ VT+ N A G+ Sbjct: 7 GTVKWFNETKGFGFI----QQESGPDVFAHFKEIASSGFKTLYEGQKVTF----NIAQGQ 58 Query: 65 YSAENLKLVPK 75 + ++P+ Sbjct: 59 KGPSAVNIIPE 69 >gi|268590420|ref|ZP_06124641.1| conserved domain protein [Providencia rettgeri DSM 1131] gi|291314334|gb|EFE54787.1| conserved domain protein [Providencia rettgeri DSM 1131] Length = 69 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE ++ DVF+H SA+ G L EGQ V ++ + A G Sbjct: 5 KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAIMGDGFKTLAEGQKVEFEITEG-AKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVIPL 69 >gi|21223064|ref|NP_628843.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|256785836|ref|ZP_05524267.1| cold shock protein [Streptomyces lividans TK24] gi|289769728|ref|ZP_06529106.1| cold shock protein [Streptomyces lividans TK24] gi|7321274|emb|CAB82052.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|289699927|gb|EFD67356.1| cold shock protein [Streptomyces lividans TK24] Length = 67 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKG-- 58 Query: 65 YSAENLKL 72 +AEN+ L Sbjct: 59 PTAENIVL 66 >gi|21222890|ref|NP_628669.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|256785998|ref|ZP_05524429.1| cold shock protein [Streptomyces lividans TK24] gi|289769893|ref|ZP_06529271.1| cold shock protein [Streptomyces lividans TK24] gi|7242722|emb|CAB77296.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|289700092|gb|EFD67521.1| cold shock protein [Streptomyces lividans TK24] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q V++D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINAQGFRSLEENQQVSFDVTQGPKGPQ 60 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 61 --AENVTPV 67 >gi|163814818|ref|ZP_02206207.1| hypothetical protein COPEUT_00969 [Coprococcus eutactus ATCC 27759] gi|158450453|gb|EDP27448.1| hypothetical protein COPEUT_00969 [Coprococcus eutactus ATCC 27759] Length = 71 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N +KGYGFI+ + E+G DVF+H SA+ + G L EGQ V++D Sbjct: 1 MKNGTVKWFNGEKGYGFISDD---ETGKDVFVHFSAINADGYKTLNEGQKVSFD 51 >gi|83814144|ref|YP_445684.1| putative cold shock-like protein cspG [Salinibacter ruber DSM 13855] gi|83755538|gb|ABC43651.1| putative cold shock-like protein cspG [Salinibacter ruber DSM 13855] Length = 163 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60 + RG+IKW++ +KG+GFI PE E G+DVFLH S + S G +L EGQ V ++ + + Sbjct: 95 MQRGTIKWFDTEKGFGFIEPE---EGGEDVFLHVSNITGSTGGDDLREGQTVAFETERTE 151 >gi|302668966|ref|YP_003832791.1| cold shock domain protein CspD2 [Butyrivibrio proteoclasticus B316] gi|302397306|gb|ADL36209.1| cold shock domain protein CspD2 [Butyrivibrio proteoclasticus B316] Length = 72 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KG+GFIT +E G+DVF+H SA++S G LT+ + V +D V+ D G Sbjct: 7 KGAVKWFDNYKGFGFIT----SEDGEDVFVHYSAISSDGYRKLTQDEKVEFD-VRIDDKG 61 Query: 64 KYSAENLKLVP 74 + A N++ + Sbjct: 62 RTVAVNVRKIS 72 >gi|291523520|emb|CBK81813.1| cold-shock DNA-binding protein family [Coprococcus catus GD/7] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +++G++KW+N KG+GFI S E G+DVF+H S + S G +L EGQ V ++ ++ Sbjct: 1 MNKGTVKWFNNQKGFGFI----SDEQGNDVFVHYSGIQSNGFKSLEEGQEVEFEVIE 53 >gi|238060156|ref|ZP_04604865.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|237881967|gb|EEP70795.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF+H SA+A++G L EGQ V ++ Q Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GPDVFVHYSAIATSGYRELNEGQKVEFEVTQ 54 >gi|30261699|ref|NP_844076.1| cold shock protein CspB [Bacillus anthracis str. Ames] gi|47526914|ref|YP_018263.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor'] gi|49184527|ref|YP_027779.1| cold shock protein CspB [Bacillus anthracis str. Sterne] gi|49480968|ref|YP_035816.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318968|ref|ZP_00391927.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012] gi|165869260|ref|ZP_02213919.1| cold shock protein CspB [Bacillus anthracis str. A0488] gi|167633426|ref|ZP_02391751.1| cold shock protein CspB [Bacillus anthracis str. A0442] gi|167639155|ref|ZP_02397428.1| cold shock protein CspB [Bacillus anthracis str. A0193] gi|170686113|ref|ZP_02877335.1| cold shock protein CspB [Bacillus anthracis str. A0465] gi|170706544|ref|ZP_02897004.1| cold shock protein CspB [Bacillus anthracis str. A0389] gi|177650384|ref|ZP_02933351.1| cold shock protein CspB [Bacillus anthracis str. A0174] gi|190566507|ref|ZP_03019425.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I] gi|196033540|ref|ZP_03100952.1| cold shock protein CspB [Bacillus cereus W] gi|196038892|ref|ZP_03106199.1| cold shock protein CspB [Bacillus cereus NVH0597-99] gi|196046644|ref|ZP_03113868.1| cold shock protein CspB [Bacillus cereus 03BB108] gi|225863558|ref|YP_002748936.1| cold shock protein CspB [Bacillus cereus 03BB102] gi|227815548|ref|YP_002815557.1| cold shock protein CspB [Bacillus anthracis str. CDC 684] gi|228914278|ref|ZP_04077893.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228945302|ref|ZP_04107657.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229183890|ref|ZP_04311106.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1] gi|229602706|ref|YP_002866103.1| cold shock protein CspB [Bacillus anthracis str. A0248] gi|254683188|ref|ZP_05147049.1| cold-shock DNA-binding protein family protein [Bacillus anthracis str. CNEVA-9066] gi|254723778|ref|ZP_05185564.1| cold-shock DNA-binding protein family protein [Bacillus anthracis str. A1055] gi|254734540|ref|ZP_05192252.1| cold-shock DNA-binding protein family protein [Bacillus anthracis str. Western North America USA6153] gi|254740949|ref|ZP_05198637.1| cold-shock DNA-binding protein family protein [Bacillus anthracis str. Kruger B] gi|254755191|ref|ZP_05207225.1| cold-shock DNA-binding protein family protein [Bacillus anthracis str. Vollum] gi|254759728|ref|ZP_05211752.1| cold-shock DNA-binding protein family protein [Bacillus anthracis str. Australia 94] gi|301053238|ref|YP_003791449.1| cold shock protein [Bacillus anthracis CI] gi|30255927|gb|AAP25562.1| cold shock protein CspB [Bacillus anthracis str. Ames] gi|47502062|gb|AAT30738.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor'] gi|49178454|gb|AAT53830.1| cold shock protein CspB [Bacillus anthracis str. Sterne] gi|49332524|gb|AAT63170.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164714700|gb|EDR20218.1| cold shock protein CspB [Bacillus anthracis str. A0488] gi|167512945|gb|EDR88318.1| cold shock protein CspB [Bacillus anthracis str. A0193] gi|167531464|gb|EDR94142.1| cold shock protein CspB [Bacillus anthracis str. A0442] gi|170128642|gb|EDS97509.1| cold shock protein CspB [Bacillus anthracis str. A0389] gi|170669810|gb|EDT20551.1| cold shock protein CspB [Bacillus anthracis str. A0465] gi|172083528|gb|EDT68588.1| cold shock protein CspB [Bacillus anthracis str. A0174] gi|190562642|gb|EDV16609.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I] gi|195993974|gb|EDX57930.1| cold shock protein CspB [Bacillus cereus W] gi|196022577|gb|EDX61260.1| cold shock protein CspB [Bacillus cereus 03BB108] gi|196030037|gb|EDX68637.1| cold shock protein CspB [Bacillus cereus NVH0597-99] gi|225786101|gb|ACO26318.1| cold shock protein CspB [Bacillus cereus 03BB102] gi|227005644|gb|ACP15387.1| cold shock protein CspB [Bacillus anthracis str. CDC 684] gi|228599542|gb|EEK57146.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1] gi|228814274|gb|EEM60540.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228845272|gb|EEM90308.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267114|gb|ACQ48751.1| cold shock protein CspB [Bacillus anthracis str. A0248] gi|300375407|gb|ADK04311.1| cold shock protein [Bacillus cereus biovar anthracis str. CI] Length = 65 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG+ DDVF+H SA+ G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|326331965|ref|ZP_08198251.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] gi|325950278|gb|EGD42332.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI E + GDDVF+H SA+ + G L E Q V +D Q Sbjct: 3 QGTVKWFNAEKGFGFIAQE---DGGDDVFVHYSAIQTQGYKTLDENQKVEFDVTQGPKGP 59 Query: 64 KYSAENLK 71 + AEN++ Sbjct: 60 Q--AENVR 65 >gi|325962509|ref|YP_004240415.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] gi|323468596|gb|ADX72281.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI+P+ S++ DVF H SA+ S G +L E Q V++D Q Sbjct: 4 GTVKWFNAEKGFGFISPDDSSQ---DVFAHYSAINSNGFRSLEENQKVSFDTEQ 54 >gi|332669153|ref|YP_004452161.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338191|gb|AEE44774.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KGYGFITP G G D+F+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFITPTG---GGQDLFVHFSAIQVDGYRTLEEGQQVDFEVGQG 55 >gi|163737381|ref|ZP_02144798.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis BS107] gi|163740951|ref|ZP_02148344.1| cold shock family protein [Phaeobacter gallaeciensis 2.10] gi|161385942|gb|EDQ10318.1| cold shock family protein [Phaeobacter gallaeciensis 2.10] gi|161388907|gb|EDQ13259.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis BS107] Length = 68 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PEG G DVF+H S V +GL L + Q V ++ + +G+ Sbjct: 4 GTVKWFNTTKGYGFIEPEG---GGKDVFVHISQVERSGLTGLADNQKVDFEMTEG-RDGR 59 Query: 65 YSAENLK 71 A +++ Sbjct: 60 QMASDIR 66 >gi|157364239|ref|YP_001471006.1| cold-shock DNA-binding domain-containing protein [Thermotoga lettingae TMO] gi|157314843|gb|ABV33942.1| putative cold-shock DNA-binding domain protein [Thermotoga lettingae TMO] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++P KGYGFIT + G DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 2 KGTVKWFDPKKGYGFIT----KQEGGDVFVHWSALEMDGFKTLKEGQEVEFE-IQDGPKG 56 Query: 64 KYSAENLKLV 73 +A ++K+V Sbjct: 57 PQAA-HVKVV 65 >gi|126173937|ref|YP_001050086.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS155] gi|153000230|ref|YP_001365911.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS185] gi|160874863|ref|YP_001554179.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS195] gi|217973821|ref|YP_002358572.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS223] gi|304409808|ref|ZP_07391428.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183] gi|307304164|ref|ZP_07583917.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175] gi|125997142|gb|ABN61217.1| cold-shock DNA-binding protein family [Shewanella baltica OS155] gi|151364848|gb|ABS07848.1| putative cold-shock DNA-binding domain protein [Shewanella baltica OS185] gi|160860385|gb|ABX48919.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195] gi|217498956|gb|ACK47149.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223] gi|304352326|gb|EFM16724.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183] gi|306913062|gb|EFN43485.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175] gi|315267099|gb|ADT93952.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678] Length = 69 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI ESG DVF+H A+ S G L EGQ V++ Q + Sbjct: 6 GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ +V Sbjct: 62 --AENVTIV 68 >gi|63148792|gb|AAY34518.1| cold shock protein [Bacillus thuringiensis serovar tolworthi] Length = 61 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 GIVKWFNSEKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN 52 >gi|327440660|dbj|BAK17025.1| cold shock protein [Solibacillus silvestris StLB046] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 4/56 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +H+G++KW++ +KGYGFI + G+DVF+H + + G +L EGQ+V +D V Sbjct: 1 MHQGTVKWFDNEKGYGFI----ESADGEDVFVHFTGIQEEGFRSLDEGQVVEFDLV 52 >gi|302546770|ref|ZP_07299112.1| putative cold shock protein [Streptomyces hygroscopicus ATCC 53653] gi|302464388|gb|EFL27481.1| putative cold shock protein [Streptomyces himastatinicus ATCC 53653] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 LTAENI 64 >gi|261404404|ref|YP_003240645.1| cold-shock DNA-binding domain-containing protein [Paenibacillus sp. Y412MC10] gi|315644849|ref|ZP_07897978.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|329929715|ref|ZP_08283401.1| major cold shock protein CspA [Paenibacillus sp. HGF5] gi|261280867|gb|ACX62838.1| cold-shock DNA-binding domain protein [Paenibacillus sp. Y412MC10] gi|315279791|gb|EFU43092.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|328935932|gb|EGG32391.1| major cold shock protein CspA [Paenibacillus sp. HGF5] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ V ++ V + Sbjct: 1 MQTGTVKWFNAEKGFGFIEVEG----GNDVFVHFSAIQGDGFKTLDEGQRVEFNIV--EG 54 Query: 62 NGKYSAENL 70 N AEN+ Sbjct: 55 NRGPQAENV 63 >gi|77361881|ref|YP_341456.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|77361882|ref|YP_341457.1| cold shock-like protein cspE, RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|76876792|emb|CAI88014.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|76876793|emb|CAI88015.1| Cold shock-like protein cspE, RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] Length = 69 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFI ESG DVF H SA+ S G L EGQ V + Q + Sbjct: 7 GSVKWFNEAKGFGFI----EQESGADVFAHFSAIVSDGFKTLAEGQRVQFTVTQGQKGPQ 62 Query: 65 YSAENLKLV 73 AEN+ + Sbjct: 63 --AENIVCI 69 >gi|37526673|ref|NP_930017.1| cold shock protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786105|emb|CAE15157.1| cold shock protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 69 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP + DVF+H SA+ S G L EGQ V ++ +Q+ G Sbjct: 6 GTVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSEGFKTLAEGQKVEFE-IQDGQKGP 61 Query: 65 YSA 67 +A Sbjct: 62 SAA 64 >gi|198282878|ref|YP_002219199.1| cold-shock DNA-binding domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666777|ref|YP_002425079.1| cold-shock protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247399|gb|ACH82992.1| cold-shock DNA-binding domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518990|gb|ACK79576.1| cold-shock protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITPE E DVF+H SA+ G L EG+ V ++ + Sbjct: 4 GTVKWFNDSKGFGFITPEDGKE---DVFVHHSAIEGTGFKTLAEGERVNFEVTR 54 >gi|221133721|ref|ZP_03560026.1| putative cold shock-like protein cspG [Glaciecola sp. HTCC2999] Length = 69 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 GS+KW+N DKGYGFIT + G DVF+H A+ S G L EGQ V+++ Sbjct: 6 GSVKWFNADKGYGFITQD---NGGKDVFVHFRAIQSEGYKTLPEGQKVSFE 53 >gi|222054862|ref|YP_002537224.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] gi|221564151|gb|ACM20123.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KG+GF+ E+G+DVF+H SA+ G +LTEG VT+D + Sbjct: 1 MEKGTVKWFNDSKGFGFL----EQENGEDVFVHFSAITGDGFKSLTEGDKVTFDVTR 53 >gi|116693857|ref|YP_839390.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia HI2424] gi|116651857|gb|ABK12497.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia HI2424] Length = 170 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 7/71 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFITP+ GDD+F H S + G L EGQ V+Y+ NG Sbjct: 107 GTVKWFNDNKGFGFITPD---SGGDDLFAHFSEIRGDGFKTLAEGQKVSYE----TKNGP 159 Query: 65 YSAENLKLVPK 75 + +VP+ Sbjct: 160 KGLQASNIVPQ 170 >gi|328883511|emb|CCA56750.1| cold shock protein [Streptomyces venezuelae ATCC 10712] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGPDVFAHFSNIAAQGFRELQEGQKVSFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|21222160|ref|NP_627939.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|256786753|ref|ZP_05525184.1| cold shock protein [Streptomyces lividans TK24] gi|289770647|ref|ZP_06530025.1| cold shock protein [Streptomyces lividans TK24] gi|5732895|gb|AAD49327.1|AF162937_1 F40 [Streptomyces coelicolor A3(2)] gi|7211015|emb|CAB76995.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|289700846|gb|EFD68275.1| cold shock protein [Streptomyces lividans TK24] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q G+ Sbjct: 4 GTVKWFNAEKGFGFIAQDG---GGADVFAHYSNIATQGFRELQEGQRVNFDVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 57 KGPQAENIVP 66 >gi|158312417|ref|YP_001504925.1| cold-shock DNA-binding domain-containing protein [Frankia sp. EAN1pec] gi|158107822|gb|ABW10019.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI +G G DVF+H SA+ SAG +L E Q V +D Q Sbjct: 3 QGTVKWFNGEKGFGFIAQDGG---GPDVFVHYSAIDSAGFRSLDENQRVEFDVTQGQKGP 59 Query: 64 KYSAENLKLV 73 + AE+++ V Sbjct: 60 Q--AEHVRPV 67 >gi|323357927|ref|YP_004224323.1| cold shock proteins [Microbacterium testaceum StLB037] gi|323274298|dbj|BAJ74443.1| cold shock proteins [Microbacterium testaceum StLB037] Length = 70 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M +G++KW+N +KG+GFI P+ + G DVF H SA+ S G +L E Q V ++ Q Sbjct: 3 MSTQGTVKWFNSEKGFGFIAPD---DGGQDVFAHYSAIQSGGYRSLEENQRVEFEIAQ 57 >gi|326202744|ref|ZP_08192612.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens DSM 2782] gi|325987328|gb|EGD48156.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens DSM 2782] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G +KW+N +KG+GFIT +G G+DVF+H S++ S+G +L EGQ V +D Sbjct: 1 MNTGIVKWFNAEKGFGFITVDG----GEDVFVHFSSIQSSGYKSLDEGQRVNFD 50 >gi|254389689|ref|ZP_05004914.1| cold shock protein scoF [Streptomyces clavuligerus ATCC 27064] gi|326445343|ref|ZP_08220077.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|197703401|gb|EDY49213.1| cold shock protein scoF [Streptomyces clavuligerus ATCC 27064] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S + S+G L EGQ VT+D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSNINSSGYRELQEGQAVTFDITQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|161507089|ref|YP_001577043.1| putative cold shock protein [Lactobacillus helveticus DPC 4571] gi|160348078|gb|ABX26752.1| putative cold shock protein [Lactobacillus helveticus DPC 4571] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 8/74 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT GS DVF+H SA+ + G +L EGQ V+YD Q Sbjct: 1 MQTGTVKWFNADKGFGFIT--GSDNK--DVFVHFSAIKTDGFKSLEEGQKVSYDVEQ--- 53 Query: 62 NGKYSAENLKLVPK 75 G + +VP+ Sbjct: 54 -GSRGPQATNVVPQ 66 >gi|163939506|ref|YP_001644390.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229011015|ref|ZP_04168209.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048] gi|229058330|ref|ZP_04196715.1| Cold shock-like protein cspB [Bacillus cereus AH603] gi|229132514|ref|ZP_04261364.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196] gi|229166538|ref|ZP_04294291.1| Cold shock-like protein cspB [Bacillus cereus AH621] gi|163861703|gb|ABY42762.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] gi|228616942|gb|EEK74014.1| Cold shock-like protein cspB [Bacillus cereus AH621] gi|228650951|gb|EEL06936.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196] gi|228720004|gb|EEL71593.1| Cold shock-like protein cspB [Bacillus cereus AH603] gi|228750187|gb|EEM00019.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048] Length = 65 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N +KG+GFI EGS +DVF+H SA+ S G L EGQ V++D + Sbjct: 2 QGKVKWFNNEKGFGFIEMEGS----EDVFVHFSAIQSDGYKALEEGQEVSFDITE 52 >gi|303229892|ref|ZP_07316668.1| cold shock protein CspB [Veillonella atypica ACS-134-V-Col7a] gi|303232195|ref|ZP_07318898.1| cold shock protein CspB [Veillonella atypica ACS-049-V-Sch6] gi|302513301|gb|EFL55340.1| cold shock protein CspB [Veillonella atypica ACS-049-V-Sch6] gi|302515448|gb|EFL57414.1| cold shock protein CspB [Veillonella atypica ACS-134-V-Col7a] Length = 65 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KGYGFI E G DVF+H SA+ G +L+EGQ VT+D V D N Sbjct: 3 GKVKWFSAEKGYGFI----EREDGSDVFVHFSAIQDEGFKSLSEGQNVTFDIV--DGNRG 56 Query: 65 YSAENL 70 A N+ Sbjct: 57 PQAANV 62 >gi|284990904|ref|YP_003409458.1| cold-shock DNA-binding domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284064149|gb|ADB75087.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus DSM 43160] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI +G G DVF H SA++ +G +L E Q V +D Q Sbjct: 3 QGTVKWFNAEKGFGFIEQDG---GGPDVFCHFSAISGSGYRSLDEAQRVEFDVTQGQKGP 59 Query: 64 KYSAENLKLV 73 + AEN++ + Sbjct: 60 Q--AENVRAI 67 >gi|218778358|ref|YP_002429676.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759742|gb|ACL02208.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI E G DVF+H SA++ +G L EG V++D V+ G Sbjct: 4 GTVKWFNDSKGYGFI----EREEGGDVFVHYSAISGSGFKTLAEGDRVSFD-VEEGQKGP 58 Query: 65 YSAENLKL 72 +A +KL Sbjct: 59 AAANVIKL 66 >gi|291246380|ref|YP_003505766.1| putative cold-shock protein C [Staphylococcus simulans bv. staphylolyticus] gi|290463911|gb|ADD24898.1| putative cold-shock protein C [Staphylococcus simulans bv. staphylolyticus] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N +KG+GFI E+G+DVF+H S +A G +L EGQ V +D + D Sbjct: 1 MNNGTVKWFNSEKGFGFI----ERENGNDVFVHFSGIAGEGYKSLEEGQNVDFDIIDGD 55 >gi|91228780|ref|ZP_01262689.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] gi|254228854|ref|ZP_04922276.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25] gi|262396796|ref|YP_003288649.1| cold shock transcriptional regulator CspA [Vibrio sp. Ex25] gi|269966724|ref|ZP_06180801.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 40B] gi|91187655|gb|EAS73978.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] gi|151938531|gb|EDN57367.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25] gi|262340390|gb|ACY54184.1| cold shock transcriptional regulator CspA [Vibrio sp. Ex25] gi|269828647|gb|EEZ82904.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 40B] Length = 70 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFI+ + GDDVF+H ++ S G LTEGQ V++ V+ G Sbjct: 7 GSVKWFNETKGFGFISQD---NGGDDVFVHFRSIVSEGFKTLTEGQKVSF-VVEQGNKGL 62 Query: 65 YSAE 68 +AE Sbjct: 63 QAAE 66 >gi|307824911|ref|ZP_07655133.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307733958|gb|EFO04813.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI P + G+DVF+H S + G LTEG VT+D Sbjct: 4 GTVKWFNNTKGFGFIAP---ADGGEDVFVHHSVIQGEGFKTLTEGDTVTFD 51 >gi|304413830|ref|ZP_07395247.1| Cold shock protein [Candidatus Regiella insecticola LSR1] gi|304283550|gb|EFL91945.1| Cold shock protein [Candidatus Regiella insecticola LSR1] Length = 88 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +GS+KW+N KG+GFITP+ ++ DVF+H SA+ G L EGQ V +D Sbjct: 24 KGSVKWFNEAKGFGFITPDDKSK---DVFVHFSAIQGDGFKTLGEGQQVEFD 72 >gi|269104191|ref|ZP_06156887.1| putative Cold shock-like protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268160831|gb|EEZ39328.1| putative Cold shock-like protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 69 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFIT + G DVF+H A+ G L EGQ VT+D Q Sbjct: 6 GTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVTFDIEQ 56 >gi|239926846|ref|ZP_04683799.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291435186|ref|ZP_06574576.1| cold shock protein scoF [Streptomyces ghanaensis ATCC 14672] gi|291338081|gb|EFE65037.1| cold shock protein scoF [Streptomyces ghanaensis ATCC 14672] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S + ++G L EGQ VT+D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFAHYSNINASGFRELQEGQAVTFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|42780794|ref|NP_978041.1| cold shock protein CspB [Bacillus cereus ATCC 10987] gi|47566079|ref|ZP_00237117.1| cold shock protein-related protein [Bacillus cereus G9241] gi|52143761|ref|YP_083069.1| cold shock protein [Bacillus cereus E33L] gi|206974820|ref|ZP_03235735.1| cold shock protein CspB [Bacillus cereus H3081.97] gi|217959179|ref|YP_002337727.1| cold shock protein CspB [Bacillus cereus AH187] gi|222095321|ref|YP_002529381.1| cold shock protein [Bacillus cereus Q1] gi|228984782|ref|ZP_04144954.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229090659|ref|ZP_04221892.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42] gi|229138395|ref|ZP_04266986.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26] gi|229155270|ref|ZP_04283381.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342] gi|229195910|ref|ZP_04322664.1| Cold shock-like protein cspB [Bacillus cereus m1293] gi|300117378|ref|ZP_07055168.1| cold shock protein CspB [Bacillus cereus SJ1] gi|42736714|gb|AAS40649.1| cold shock protein CspB [Bacillus cereus ATCC 10987] gi|47556996|gb|EAL15326.1| cold shock protein-related protein [Bacillus cereus G9241] gi|51977230|gb|AAU18780.1| cold shock protein [Bacillus cereus E33L] gi|206746839|gb|EDZ58231.1| cold shock protein CspB [Bacillus cereus H3081.97] gi|217064802|gb|ACJ79052.1| cold shock protein CspB [Bacillus cereus AH187] gi|221239379|gb|ACM12089.1| cold shock protein [Bacillus cereus Q1] gi|228587552|gb|EEK45616.1| Cold shock-like protein cspB [Bacillus cereus m1293] gi|228628195|gb|EEK84911.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342] gi|228645066|gb|EEL01307.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26] gi|228692601|gb|EEL46327.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42] gi|228774980|gb|EEM23374.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|298725213|gb|EFI65865.1| cold shock protein CspB [Bacillus cereus SJ1] gi|324325719|gb|ADY20979.1| cold shock protein CspB [Bacillus thuringiensis serovar finitimus YBT-020] Length = 65 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG+ DDVF+H SA+ G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIEIEGA----DDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|225871753|ref|YP_002753207.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] gi|225793287|gb|ACO33377.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 47/70 (67%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GF+ S +G+DVF+H SA+ S G +L EGQ V ++ V+ A Sbjct: 1 MEQGTVKWFNDAKGFGFL----SRPNGEDVFVHFSAITSNGFRSLQEGQAVQFNVVKG-A 55 Query: 62 NGKYSAENLK 71 G + AEN++ Sbjct: 56 KG-WQAENVQ 64 >gi|157372097|ref|YP_001480086.1| cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] gi|157323861|gb|ABV42958.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] Length = 70 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFITP+ ++ DVF+H SA+ S+ L EGQ V + ++N A G Sbjct: 7 GLVKWFNADKGFGFITPQDGSK---DVFVHFSAIQSSDFKTLDEGQKVEFS-IENGAKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 SAVNVIAL 70 >gi|257469649|ref|ZP_05633741.1| cold-shock domain-contain protein [Fusobacterium ulcerans ATCC 49185] gi|317063885|ref|ZP_07928370.1| cold-shock DNA-binding domain-containing protein [Fusobacterium ulcerans ATCC 49185] gi|313689561|gb|EFS26396.1| cold-shock DNA-binding domain-containing protein [Fusobacterium ulcerans ATCC 49185] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N DKG+GFI S E G+D F+H S + S G +L EGQ VT++ + + Sbjct: 3 KGTVKWFNKDKGFGFI----SGEDGNDYFVHYSNINSKGFRSLEEGQAVTFEVTEGN 55 >gi|217970098|ref|YP_002355332.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] gi|217507425|gb|ACK54436.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] Length = 69 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITPEG GDD+F H S + S G +L E Q V ++ Sbjct: 3 TQTGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIQSKGFKSLAENQRVEFE 53 >gi|91200723|emb|CAJ73775.1| strongly similar to cold shock protein CspB [Candidatus Kuenenia stuttgartiensis] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S E+G DVF+H++++ S G L EG V +D + +D G+ Sbjct: 4 GTVKWFNDSKGFGFI----SQENGTDVFVHQTSIKSEGFRTLAEGDKVEFDVI-SDQKGQ 58 Query: 65 YSAENLKL 72 + +K+ Sbjct: 59 KATNVVKV 66 >gi|29830990|ref|NP_825624.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29608104|dbj|BAC72159.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ V +D Q G+ Sbjct: 4 GTVKWFNAEKGFGFIEQDGG---GADVFAHYSNIATSGFRELQEGQKVNFDVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 57 KGPQAENIVP 66 >gi|317492161|ref|ZP_07950591.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919866|gb|EFV41195.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 69 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP + DVF+H SA+ S G L EGQ V + +Q+ G Sbjct: 6 GHVKWFNESKGFGFITP---ADGSKDVFVHFSAIKSDGFKTLAEGQQVEF-AIQDSPRGP 61 Query: 65 YSAENLKL 72 +A+ + L Sbjct: 62 SAADVIAL 69 >gi|168031977|ref|XP_001768496.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680209|gb|EDQ66647.1| predicted protein [Physcomitrella patens subsp. patens] Length = 178 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 44/63 (69%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ + G+D+F+H++++ + G +L EG++V + V++ +G+ Sbjct: 5 GKVKWFNSSKGFGFITPD---KGGEDLFVHQTSIHAEGFRSLREGEVVEFQ-VESSEDGR 60 Query: 65 YSA 67 A Sbjct: 61 TKA 63 >gi|260549563|ref|ZP_05823781.1| cold-shock DNA-binding domain-containing protein [Acinetobacter sp. RUH2624] gi|260407356|gb|EEX00831.1| cold-shock DNA-binding domain-containing protein [Acinetobacter sp. RUH2624] Length = 70 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 8/71 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +SG DVF H +AS+G L EGQ VT++ VQ G+ Sbjct: 8 GTVKWFNETKGFGFI----QQDSGPDVFAHFKEIASSGFKTLHEGQRVTFNVVQ----GQ 59 Query: 65 YSAENLKLVPK 75 ++P+ Sbjct: 60 KGPSATNIIPQ 70 >gi|149185796|ref|ZP_01864111.1| Cold shock protein [Erythrobacter sp. SD-21] gi|148830357|gb|EDL48793.1| Cold shock protein [Erythrobacter sp. SD-21] Length = 69 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKGYGFI P+ + D F+H SAV +AG+ L + Q + Y+ V+ NGK Sbjct: 4 GTVKFFNGDKGYGFIQPD---DGSADSFVHISAVQAAGMTTLDKDQRLNYE-VETGRNGK 59 Query: 65 YSAENL 70 SA NL Sbjct: 60 ASAVNL 65 >gi|269127093|ref|YP_003300463.1| cold-shock DNA-binding domain-containing protein [Thermomonospora curvata DSM 43183] gi|268312051|gb|ACY98425.1| cold-shock DNA-binding domain protein [Thermomonospora curvata DSM 43183] Length = 68 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 3/58 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M +G++KW+N +KGYGFI +G G DVF+H SA+ S+G L E Q V ++ Q Sbjct: 1 MPQQGTVKWFNAEKGYGFIAVDG---DGPDVFVHYSAIQSSGYRTLDENQRVEFEVTQ 55 >gi|223982871|ref|ZP_03633090.1| hypothetical protein HOLDEFILI_00364 [Holdemania filiformis DSM 12042] gi|223965156|gb|EEF69449.1| hypothetical protein HOLDEFILI_00364 [Holdemania filiformis DSM 12042] Length = 69 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KGYGFI+ + D+F+H S + +G +L EGQ V+YD ++ Sbjct: 1 MNTGKVKWFNAEKGYGFISDDNGQ---GDIFVHFSGINGSGYKSLEEGQKVSYDVENDER 57 Query: 62 NGKYSAENLKLV 73 +GK A N+ ++ Sbjct: 58 SGKTRAVNVTVL 69 >gi|213423037|ref|ZP_03356055.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 55 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ Sbjct: 3 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFE 51 >gi|157692698|ref|YP_001487160.1| cold shock protein [Bacillus pumilus SAFR-032] gi|194016855|ref|ZP_03055468.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|157681456|gb|ABV62600.1| cold shock protein [Bacillus pumilus SAFR-032] gi|194011461|gb|EDW21030.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G +KW+N +KG+GFI EG GDDVF+H +A+ G +L EGQ V+++ V+ Sbjct: 1 MQNGKVKWFNNEKGFGFIEVEG----GDDVFVHFTAIEGDGYKSLEEGQEVSFEIVE 53 >gi|16079252|ref|NP_390076.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus subtilis subsp. subtilis str. 168] gi|221310107|ref|ZP_03591954.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|221314429|ref|ZP_03596234.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319351|ref|ZP_03600645.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221323627|ref|ZP_03604921.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. SMY] gi|321311659|ref|YP_004203946.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus subtilis BSn5] gi|1706171|sp|P51777|CSPD_BACSU RecName: Full=Cold shock protein CspD gi|1256629|gb|AAA96623.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|2634613|emb|CAB14111.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus subtilis subsp. subtilis str. 168] gi|291484613|dbj|BAI85688.1| cold-shock protein [Bacillus subtilis subsp. natto BEST195] gi|320017933|gb|ADV92919.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus subtilis BSn5] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G +KW+N +KG+GFI EG GDDVF+H +A+ G +L EGQ V+++ V+ Sbjct: 1 MQNGKVKWFNNEKGFGFIEVEG----GDDVFVHFTAIEGDGYKSLEEGQEVSFEIVE 53 >gi|310659567|ref|YP_003937288.1| DNA-binding transcriptional repressor [Clostridium sticklandii DSM 519] gi|308826345|emb|CBH22383.1| DNA-binding transcriptional repressor [Clostridium sticklandii] Length = 65 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ Q + Sbjct: 3 GKVKWFNAEKGFGFI----EREDGDDVFVHFSAIQGDGFKTLEEGQTVEFEITQGN 54 >gi|330807764|ref|YP_004352226.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375872|gb|AEA67222.1| putative Transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 69 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 GS+KW+N KGYGFI EG G DVF+H A+ G +LTEGQ V Y V+ Sbjct: 7 GSVKWFNDAKGYGFIQREG----GADVFVHYRAIRGEGHRSLTEGQQVEYAVVEG 57 >gi|254820163|ref|ZP_05225164.1| hypothetical protein MintA_09561 [Mycobacterium intracellulare ATCC 13950] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N DKG+GFI P+G + DVF+H S + +G +L E Q V ++ Q Sbjct: 3 QGTVKWFNSDKGFGFIAPDGGEK---DVFVHHSEIQESGFRSLEENQRVQFEITQ 54 >gi|310658174|ref|YP_003935895.1| major cold shock protein [Clostridium sticklandii DSM 519] gi|308824952|emb|CBH20990.1| major cold shock protein [Clostridium sticklandii] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI+ EG DVF+H SA+ S G +L EGQ V ++ V D Sbjct: 4 GIVKWFNAEKGFGFISVEGEK----DVFVHFSAIQSEGYRSLEEGQEVQFEIVDGD 55 >gi|299065937|emb|CBJ37118.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum CMR15] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V +D Q+ Sbjct: 4 GTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQS 55 >gi|283856223|ref|YP_162014.2| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|283775218|gb|AAV88903.2| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 258 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K++N KG+GF+ + + G+DVF+H SAV AGL L EGQ +++ V D G+ Sbjct: 93 GVVKFFNSQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGGR 147 Query: 65 YSAENLKL 72 SA NL + Sbjct: 148 VSATNLGI 155 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AGL +L EG ++++ ++ D GK Sbjct: 192 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGLPSLNEGDRLSFE-LEVDRRGK 247 Query: 65 YSAENL 70 Y+A NL Sbjct: 248 YAAVNL 253 >gi|241760852|ref|ZP_04758941.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374471|gb|EER63932.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 257 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K++N KG+GF+ + + G+DVF+H SAV AGL L EGQ +++ V D G+ Sbjct: 92 GVVKFFNSQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGGR 146 Query: 65 YSAENLKL 72 SA NL + Sbjct: 147 VSATNLGI 154 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AGL +L EG ++++ ++ D GK Sbjct: 191 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGLPSLNEGDRLSFE-LEVDRRGK 246 Query: 65 YSAENL 70 Y+A NL Sbjct: 247 YAAVNL 252 >gi|153005354|ref|YP_001379679.1| cold-shock DNA-binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028927|gb|ABS26695.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N KG+GFI +G G+DVF H +A+ S G L EGQ V ++ Q Sbjct: 4 GSVKWFNDAKGFGFIQQDG---GGEDVFCHHTAIQSQGFRTLQEGQRVEFEVKQ 54 >gi|119898894|ref|YP_934107.1| cold shock-like protein [Azoarcus sp. BH72] gi|119671307|emb|CAL95220.1| cold shock-like protein [Azoarcus sp. BH72] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITPE G+D+F H SA+ +G +L EGQ V ++ + Sbjct: 4 GTVKWFNDAKGFGFITPE---NGGEDLFAHFSAIQGSGFKSLAEGQRVEFEITR 54 >gi|218767948|ref|YP_002342460.1| putative transcriptional regulator [Neisseria meningitidis Z2491] gi|241758498|ref|ZP_04756617.1| cold-shock DNA-binding domain protein [Neisseria flavescens SK114] gi|121051956|emb|CAM08264.1| putative transcriptional regulator [Neisseria meningitidis Z2491] gi|241321333|gb|EER57481.1| cold-shock DNA-binding domain protein [Neisseria flavescens SK114] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D V GK Sbjct: 4 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMDGFKTLKEGQRVSFD-VTTGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|260777147|ref|ZP_05886041.1| cold shock protein CspE [Vibrio coralliilyticus ATCC BAA-450] gi|260606813|gb|EEX33087.1| cold shock protein CspE [Vibrio coralliilyticus ATCC BAA-450] Length = 69 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V + Q + Sbjct: 7 GTVKWFNETKGFGFI----QQENGPDVFAHFSAITGDGFRTLVEGQKVEFTVSQGQKGPQ 62 Query: 65 YSAENLKLV 73 AEN+KLV Sbjct: 63 --AENIKLV 69 >gi|257453190|ref|ZP_05618489.1| cold shock protein [Fusobacterium sp. 3_1_5R] gi|257467346|ref|ZP_05631657.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563] gi|315918476|ref|ZP_07914716.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059724|ref|ZP_07924209.1| cold shock protein [Fusobacterium sp. 3_1_5R] gi|313685400|gb|EFS22235.1| cold shock protein [Fusobacterium sp. 3_1_5R] gi|313692351|gb|EFS29186.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563] Length = 66 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ VT+D + Sbjct: 2 KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVTFDITE 52 >gi|110634484|ref|YP_674692.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp. BNC1] gi|110285468|gb|ABG63527.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1] Length = 70 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N KG+GFITP+ + DVF+H SAV ++GL L +GQ VT+D + D Sbjct: 1 MPQSGTVKFFNHAKGFGFITPDDGQK---DVFVHISAVQASGLPGLEDGQKVTFD-TEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KRGK 60 >gi|37527652|ref|NP_930996.1| cold shock-like protein (CPS-I) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787087|emb|CAE16162.1| cold shock-like protein (CPS-I) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 71 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI+P+ ++ DVF+H SA+ S L EGQ V++ ++N A G Sbjct: 7 GSVKWFNNDKGFGFISPKDGSK---DVFVHYSAIQSNNFKTLEEGQEVSFS-IENGAKG 61 >gi|311742699|ref|ZP_07716508.1| CspA family cold shock transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311314327|gb|EFQ84235.1| CspA family cold shock transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N DKG+GFI P+ +E DVF H +A+ S+G +L E Q V +D Q Sbjct: 4 GTVKWFNADKGFGFIAPDDGSE---DVFAHFTAIQSSGYRSLNENQKVEFDVEQ 54 >gi|296283311|ref|ZP_06861309.1| cold shock protein [Citromicrobium bathyomarinum JL354] Length = 70 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G++K++N DKG+GFI P +GS +S F+H +AV +AG+ L + Q + Y+ V+ Sbjct: 1 MAKTGTVKFFNSDKGFGFIQPDDGSADS----FVHITAVQAAGMQGLDKDQRLNYE-VEQ 55 Query: 60 DANGKYSAENL 70 NGK SA NL Sbjct: 56 GRNGKESAVNL 66 >gi|218676106|ref|YP_002394925.1| cold shock protein [Vibrio splendidus LGP32] gi|218324374|emb|CAV25748.1| cold shock protein [Vibrio splendidus LGP32] Length = 76 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI+ + G DVF+H A+AS G L EGQ V+++ V+N G Sbjct: 13 GTVKWFNEEKGFGFISQD---NGGADVFVHFRAIASEGFKTLKEGQKVSFE-VENGQKGL 68 Query: 65 YSA 67 +A Sbjct: 69 QAA 71 >gi|192359729|ref|YP_001980822.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107] gi|190685894|gb|ACE83572.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107] Length = 75 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKGYGFI EG G DVF+H A+ G L EGQ VT++ Q Sbjct: 13 GVVKWFNDDKGYGFIEREG----GADVFVHFRAINGTGRRTLKEGQKVTFEVTQ 62 >gi|119962819|ref|YP_946960.1| cold shock protein [Arthrobacter aurescens TC1] gi|119949678|gb|ABM08589.1| putative cold shock protein [Arthrobacter aurescens TC1] Length = 67 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI+PE ++ DVF H SA+ S+G +L E Q V++D Q Sbjct: 4 GTVKWFNSEKGFGFISPEDGSQ---DVFAHYSAINSSGYRSLEENQKVSFDVEQ 54 >gi|331005484|ref|ZP_08328862.1| cold-shock DNA-binding domain protein [gamma proteobacterium IMCC1989] gi|330420676|gb|EGG94964.1| cold-shock DNA-binding domain protein [gamma proteobacterium IMCC1989] Length = 68 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58 +G++KW+N DKG+GFITPE + G D+F+H S + S G + L +GQ V ++ Q Sbjct: 3 KGTVKWFNADKGFGFITPE---DGGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQ 55 >gi|326502466|dbj|BAJ95296.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326507234|dbj|BAJ95694.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 264 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 40/57 (70%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N KG+GFI+P+ +E D+F+H+S++ + G +L EG++V + + D Sbjct: 8 KGTVKWFNDTKGFGFISPDDGSE---DLFVHQSSIKADGFRSLAEGEVVEFSVSEGD 61 >gi|169827740|ref|YP_001697898.1| cold shock protein [Lysinibacillus sphaericus C3-41] gi|168992228|gb|ACA39768.1| Cold shock protein [Lysinibacillus sphaericus C3-41] Length = 68 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ +G +KW+N +KGYGFI + G+DVF+H + + G L EGQ V++D V+ Sbjct: 2 LMQQGIVKWFNNEKGYGFI----ECDDGEDVFVHFTGIQEEGFRTLEEGQKVSFDVVE 55 >gi|91793637|ref|YP_563288.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217] gi|91715639|gb|ABE55565.1| cold-shock DNA-binding protein family [Shewanella denitrificans OS217] Length = 69 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI ESG DVF+H A+ S G L EGQ V++ Q + Sbjct: 6 GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ +V Sbjct: 62 --AENVSVV 68 >gi|294630457|ref|ZP_06709017.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292833790|gb|EFF92139.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 67 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIATQGFRELLEGQKVTFDIGQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|257462895|ref|ZP_05627301.1| cold shock protein [Fusobacterium sp. D12] gi|317060519|ref|ZP_07925004.1| cold shock protein [Fusobacterium sp. D12] gi|313686195|gb|EFS23030.1| cold shock protein [Fusobacterium sp. D12] Length = 66 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ VT+D + Sbjct: 2 KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVTFDITE 52 >gi|322417715|ref|YP_004196938.1| cold-shock DNA-binding domain-containing protein [Geobacter sp. M18] gi|320124102|gb|ADW11662.1| cold-shock DNA-binding domain protein [Geobacter sp. M18] Length = 66 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N KG+GFI E+G+DVF+H SA+ S G +L EG VT+D Q Sbjct: 3 KGVVKWFNDSKGFGFI----EQENGEDVFVHFSAIQSDGFKSLAEGDSVTFDVQQ 53 >gi|153005392|ref|YP_001379717.1| cold-shock DNA-binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028965|gb|ABS26733.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 65 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+ EG G+DVF+H +A+ G L EG+ V +D Q Sbjct: 4 GTVKWFNDAKGFGFISQEG----GEDVFVHHTAIQMDGFRTLKEGERVEFDVTQ 53 >gi|115379755|ref|ZP_01466829.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|115363242|gb|EAU62403.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] Length = 85 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT +G G+DVF H +A+ + G +LTEGQ V ++ + Sbjct: 22 GVVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQADGFRSLTEGQRVEFEVSRGPKG-- 76 Query: 65 YSAENLKLV 73 A+N+K + Sbjct: 77 LQAQNVKPI 85 >gi|119776095|ref|YP_928835.1| cold-shock DNA-binding domain-containing protein [Shewanella amazonensis SB2B] gi|119768595|gb|ABM01166.1| cold-shock DNA-binding protein family [Shewanella amazonensis SB2B] Length = 70 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFITP+ G DVF+H A+A G L EGQ V ++ Q N Sbjct: 7 GSVKWFNETKGFGFITPD---NGGADVFVHFRAIAVDGFKTLAEGQQVQFNVEQ--GNKG 61 Query: 65 YSAENLKLV 73 A N+ L+ Sbjct: 62 PQAANVTLL 70 >gi|329936006|ref|ZP_08285806.1| cold shock protein [Streptomyces griseoaurantiacus M045] gi|329304484|gb|EGG48362.1| cold shock protein [Streptomyces griseoaurantiacus M045] Length = 67 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q V++D Q Sbjct: 4 GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVSFDVTQ 54 >gi|262273606|ref|ZP_06051420.1| cold shock protein CspA [Grimontia hollisae CIP 101886] gi|262273607|ref|ZP_06051421.1| cold shock protein CspD [Grimontia hollisae CIP 101886] gi|262222584|gb|EEY73895.1| cold shock protein CspA [Grimontia hollisae CIP 101886] gi|262222585|gb|EEY73896.1| cold shock protein CspD [Grimontia hollisae CIP 101886] Length = 70 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V++D Q Sbjct: 7 GLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASDGFKTLAEGQKVSFDVEQ 57 >gi|167758030|ref|ZP_02430157.1| hypothetical protein CLOSCI_00368 [Clostridium scindens ATCC 35704] gi|167663927|gb|EDS08057.1| hypothetical protein CLOSCI_00368 [Clostridium scindens ATCC 35704] Length = 80 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +V +G++KW+N KGYGFI S E+G+DVF+H S + G +L EGQ V YD Sbjct: 14 IVMKGTVKWFNNQKGYGFI----SDEAGNDVFVHYSGLNMDGFKSLEEGQEVEYD 64 >gi|15896242|ref|NP_349591.1| cold shock protein [Clostridium acetobutylicum ATCC 824] gi|15026046|gb|AAK80931.1|AE007796_1 Cold shock protein [Clostridium acetobutylicum ATCC 824] gi|325510397|gb|ADZ22033.1| Cold shock protein [Clostridium acetobutylicum EA 2018] Length = 65 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFIT T+ G+DVF+H S + G L EGQ V +D + Sbjct: 3 GTVKWFNSQKGYGFIT----TQEGNDVFVHYSGIKDNGFKTLEEGQEVEFDLTE 52 >gi|119475889|ref|ZP_01616241.1| Cold shock protein [marine gamma proteobacterium HTCC2143] gi|119450516|gb|EAW31750.1| Cold shock protein [marine gamma proteobacterium HTCC2143] Length = 69 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI ESG DVF+H SA+ S+G L EGQ V + Q + Sbjct: 7 GTVKWFNESKGFGFI----EQESGPDVFVHFSAINSSGFKTLAEGQKVEFTVTQGQKGPQ 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 --AENV 66 >gi|145594319|ref|YP_001158616.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440] gi|159037387|ref|YP_001536640.1| cold-shock DNA-binding domain-containing protein [Salinispora arenicola CNS-205] gi|145303656|gb|ABP54238.1| cold-shock DNA-binding protein family [Salinispora tropica CNB-440] gi|157916222|gb|ABV97649.1| cold-shock DNA-binding domain protein [Salinispora arenicola CNS-205] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N DKG+GFIT +G G DVF+H SA+ ++G L E Q V ++ Q Sbjct: 3 QGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQTSGYRTLEENQRVEFEIAQ 54 >gi|83648221|ref|YP_436656.1| cold shock protein [Hahella chejuensis KCTC 2396] gi|83636264|gb|ABC32231.1| Cold shock protein [Hahella chejuensis KCTC 2396] Length = 69 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 4/51 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW+N KG+GFI ESG DVF H SA+ S G LTEGQ V + Sbjct: 6 KGTVKWFNETKGFGFI----QQESGPDVFAHFSAIVSNGFKTLTEGQQVEF 52 >gi|73538776|ref|YP_299143.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72122113|gb|AAZ64299.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G++KW+N KG+GFITP+ G+D+F H SA+ AG +L EGQ V Y Sbjct: 1 METGTVKWFNDAKGFGFITPDA---GGNDLFAHFSAIEGAGFKSLKEGQKVRY 50 >gi|197117779|ref|YP_002138206.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|197087139|gb|ACH38410.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+ E+GDDVF H SA+ G +L EG VT+D V+ Sbjct: 4 GTVKWFNDSKGFGFL----EQENGDDVFCHFSAITGEGFKSLVEGDSVTFDVVR 53 >gi|45441597|ref|NP_993136.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001] gi|51596736|ref|YP_070927.1| cold shock protein [Yersinia pseudotuberculosis IP 32953] gi|108807860|ref|YP_651776.1| cold shock protein [Yersinia pestis Antiqua] gi|108812136|ref|YP_647903.1| cold shock protein [Yersinia pestis Nepal516] gi|123442814|ref|YP_001008382.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145599073|ref|YP_001163149.1| cold shock protein [Yersinia pestis Pestoides F] gi|149366382|ref|ZP_01888416.1| cold shock protein [Yersinia pestis CA88-4125] gi|165925512|ref|ZP_02221344.1| conserved domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938445|ref|ZP_02227002.1| conserved domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008118|ref|ZP_02229016.1| conserved domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166210711|ref|ZP_02236746.1| conserved domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167422600|ref|ZP_02314353.1| conserved domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426330|ref|ZP_02318083.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466596|ref|ZP_02331300.1| cold shock protein [Yersinia pestis FV-1] gi|170023981|ref|YP_001720486.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|186895799|ref|YP_001872911.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|218928790|ref|YP_002346665.1| cold shock protein [Yersinia pestis CO92] gi|229841646|ref|ZP_04461804.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843763|ref|ZP_04463906.1| cold shock protein [Yersinia pestis biovar Orientalis str. India 195] gi|229894506|ref|ZP_04509688.1| cold shock protein [Yersinia pestis Pestoides A] gi|229902455|ref|ZP_04517574.1| cold shock protein [Yersinia pestis Nepal516] gi|257168075|ref|YP_003169743.1| cold shock protein [Yersinia pestis KIM 10] gi|270490364|ref|ZP_06207438.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|284988615|ref|YP_003422336.1| cold shock protein [Yersinia pseudotuberculosis IP 31758] gi|332161292|ref|YP_004297869.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|45436458|gb|AAS62013.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001] gi|51590018|emb|CAH21652.1| cold shock protein [Yersinia pseudotuberculosis IP 32953] gi|108775784|gb|ABG18303.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108779773|gb|ABG13831.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] gi|115347401|emb|CAL20300.1| cold shock protein [Yersinia pestis CO92] gi|122089775|emb|CAL12628.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145210769|gb|ABP40176.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|149290756|gb|EDM40831.1| cold shock protein [Yersinia pestis CA88-4125] gi|165913560|gb|EDR32180.1| conserved domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922621|gb|EDR39772.1| conserved domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992500|gb|EDR44801.1| conserved domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207891|gb|EDR52371.1| conserved domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166958447|gb|EDR55468.1| conserved domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167054685|gb|EDR64489.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750515|gb|ACA68033.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186698825|gb|ACC89454.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|229680501|gb|EEO76598.1| cold shock protein [Yersinia pestis Nepal516] gi|229689371|gb|EEO81434.1| cold shock protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694109|gb|EEO84157.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703525|gb|EEO90542.1| cold shock protein [Yersinia pestis Pestoides A] gi|270338868|gb|EFA49645.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|318605204|emb|CBY26702.1| cold shock protein CspA [Yersinia enterocolitica subsp. palearctica Y11] gi|320014803|gb|ADV98374.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin 35] gi|325665522|gb|ADZ42166.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860359|emb|CBX70670.1| cold shock-like protein cspC [Yersinia enterocolitica W22703] Length = 70 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + ++N A Sbjct: 4 MMKGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQNVQFS-IENGA 59 Query: 62 NGKYSA 67 G +A Sbjct: 60 KGPSAA 65 >gi|255318100|ref|ZP_05359344.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] gi|262379848|ref|ZP_06073004.1| cold shock domain-containing protein CspD [Acinetobacter radioresistens SH164] gi|255304811|gb|EET83984.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] gi|262299305|gb|EEY87218.1| cold shock domain-containing protein CspD [Acinetobacter radioresistens SH164] Length = 69 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E SG DVF H S +AS+G L EGQ V++ Q Sbjct: 7 GTVKWFNEAKGFGFIQQE----SGSDVFAHFSEIASSGFKTLFEGQQVSFSVAQ 56 >gi|238063836|ref|ZP_04608545.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|302866724|ref|YP_003835361.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029] gi|315503139|ref|YP_004082026.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|237885647|gb|EEP74475.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|302569583|gb|ADL45785.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC 27029] gi|315409758|gb|ADU07875.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N DKG+GFIT +G G DVF+H SA+ ++G L E Q V ++ Q Sbjct: 3 QGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQTSGYRTLEENQRVEFEIAQ 54 >gi|195970700|gb|ACG60738.1| putative cold shock protein [Streptomyces flavoviridis] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVSFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|319786935|ref|YP_004146410.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317465447|gb|ADV27179.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 68 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+PE + DVF H SA+ + G +L EGQ V+Y+ Q Sbjct: 4 GTVKWFNDAKGFGFISPE---DGSADVFAHFSAINAKGFRSLREGQRVSYEVTQ 54 >gi|312897558|ref|ZP_07756978.1| major cold shock protein CspA [Megasphaera micronuciformis F0359] gi|310621410|gb|EFQ04950.1| major cold shock protein CspA [Megasphaera micronuciformis F0359] Length = 65 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +G +KW++ +KGYGFI E G DVF+H SA+ G +LTEGQ V +D V Sbjct: 2 QGKVKWFSAEKGYGFI----EREDGGDVFVHFSAIQEDGFKSLTEGQEVEFDIV 51 >gi|220911419|ref|YP_002486728.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|325961974|ref|YP_004239880.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] gi|219858297|gb|ACL38639.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|323468061|gb|ADX71746.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI P+ + DVF H SA+AS+G +L E Q V +D Q + Sbjct: 4 GTVKWFNAEKGFGFIAPDDGSA---DVFAHYSAIASSGYRSLDENQKVEFDVTQGPKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENIR 65 >gi|308067105|ref|YP_003868710.1| Cold shock-like protein cspLB (CspB) [Paenibacillus polymyxa E681] gi|305856384|gb|ADM68172.1| Cold shock-like protein cspLB (CspB) [Paenibacillus polymyxa E681] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF+H SA+ G +L EGQ V ++ V + Sbjct: 1 MQTGTVKWFNAEKGFGFIEVEG----GSDVFVHFSAIQGDGFKSLDEGQRVEFNVV--EG 54 Query: 62 NGKYSAENL 70 N AEN+ Sbjct: 55 NRGPQAENV 63 >gi|291326366|ref|ZP_06124240.2| conserved domain protein [Providencia rettgeri DSM 1131] gi|291314630|gb|EFE55083.1| conserved domain protein [Providencia rettgeri DSM 1131] Length = 77 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + ++N A G Sbjct: 13 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQQVEFT-IENGAKG 68 Query: 64 KYSA 67 +A Sbjct: 69 PAAA 72 >gi|21231725|ref|NP_637642.1| major cold shock protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768149|ref|YP_242911.1| major cold shock protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991286|ref|YP_001903296.1| cold shock protein [Xanthomonas campestris pv. campestris str. B100] gi|21113428|gb|AAM41566.1| major cold shock protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573481|gb|AAY48891.1| major cold shock protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733046|emb|CAP51244.1| cold shock protein [Xanthomonas campestris pv. campestris] Length = 69 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFITP ESG D+F+H A+ G +L EGQ V++ VQ Sbjct: 7 GVVKWFNDAKGFGFITP----ESGPDLFVHFRAIQGTGFKSLQEGQKVSFVAVQ 56 >gi|113970957|ref|YP_734750.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-4] gi|114048181|ref|YP_738731.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-7] gi|113885641|gb|ABI39693.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4] gi|113889623|gb|ABI43674.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7] Length = 69 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V+Y+ Q Sbjct: 6 GIVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSEGFKTLAEGQKVSYEVEQ 56 >gi|326330338|ref|ZP_08196648.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] gi|325951875|gb|EGD43905.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N DKG+GFI + GDDVF+H SA+ + G L E Q V +D Q Sbjct: 3 QGTVKWFNGDKGFGFIAQD---NGGDDVFVHFSAIQTQGYKTLDENQRVEFDVTQGPKGP 59 Query: 64 KYSAENLKLV 73 + AEN++ V Sbjct: 60 Q--AENVRPV 67 >gi|319778247|ref|YP_004129160.1| cold-shock DNA-binding domain protein [Taylorella equigenitalis MCE9] gi|317108271|gb|ADU91017.1| cold-shock DNA-binding domain protein [Taylorella equigenitalis MCE9] Length = 76 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+TPEGS E D+F+H S++ G L E Q ++++ + Sbjct: 13 GTVKWFNDTKGFGFVTPEGSNE---DLFIHFSSIQMEGFKTLKENQKISFEITE 63 >gi|299534886|ref|ZP_07048215.1| cold shock protein [Lysinibacillus fusiformis ZC1] gi|298729731|gb|EFI70277.1| cold shock protein [Lysinibacillus fusiformis ZC1] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI EG G DVF H SA+ G +L EGQ V + V+ G Sbjct: 3 QGTVKWFNAEKGFGFIEVEG----GQDVFAHFSAIQGEGFKSLEEGQKVEFT-VEEGQRG 57 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 58 PQAANIVKL 66 >gi|260769345|ref|ZP_05878278.1| cold shock protein CspA [Vibrio furnissii CIP 102972] gi|260614683|gb|EEX39869.1| cold shock protein CspA [Vibrio furnissii CIP 102972] gi|315181877|gb|ADT88790.1| cold-shock DNA-binding domain protein [Vibrio furnissii NCTC 11218] Length = 70 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFITP+ G D+F+H ++AS G L EGQ V+++ Q + Sbjct: 7 GTVKWFNETKGFGFITPD---NGGADLFVHFRSIASEGFKTLAEGQKVSFNVEQGN 59 >gi|27550093|gb|AAO18076.1| unknown [Photorhabdus luminescens] Length = 71 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI+P+ ++ DVF+H SA+ S L EGQ V++ ++N A G Sbjct: 7 GSVKWFNNDKGFGFISPKDGSK---DVFVHYSAIQSNNFKTLEEGQEVSFS-IENGAKG 61 >gi|149190926|ref|ZP_01869189.1| putative Cold shock-like protein [Vibrio shilonii AK1] gi|148835281|gb|EDL52255.1| putative Cold shock-like protein [Vibrio shilonii AK1] Length = 70 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GF+ E G DVF+H A+AS G L EGQ V+++ Q Sbjct: 7 GTVKWFNEEKGFGFLAQE---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 57 >gi|115375364|ref|ZP_01462627.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|310819145|ref|YP_003951503.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1] gi|115367648|gb|EAU66620.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|309392217|gb|ADO69676.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFIT +G G+D+F H +A+ + G +L EGQ V +D + Sbjct: 4 GTVKWFNDAKGFGFITQDG---GGEDLFCHHTAIQTQGFRSLQEGQKVEFDVARGPKG-- 58 Query: 65 YSAENLKLV 73 A+N++ V Sbjct: 59 LQAQNVRPV 67 >gi|303233532|ref|ZP_07320194.1| cold shock protein CspA [Finegoldia magna BVS033A4] gi|302495370|gb|EFL55114.1| cold shock protein CspA [Finegoldia magna BVS033A4] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFIT E + D+F+H+SA+ G L EGQ V+YD +D Sbjct: 4 GTVKWFNSTKGFGFITGEDNK----DIFVHQSAIQEDGFRTLEEGQKVSYDVEASD 55 >gi|229528227|ref|ZP_04417618.1| cold-shock protein DNA-binding [Vibrio cholerae 12129(1)] gi|229334589|gb|EEO00075.1| cold-shock protein DNA-binding [Vibrio cholerae 12129(1)] Length = 72 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFITP+ G DVF+H +++ S G+ L EGQ V + Q G Sbjct: 9 GSVKWFNESKGFGFITPD---SGGSDVFVHFNSITSGGVKTLFEGQKVNFSIEQ----GS 61 Query: 65 YSAENLKLVP 74 + + ++P Sbjct: 62 KGLQAVNVIP 71 >gi|239930668|ref|ZP_04687621.1| cold-shock domain-containing protein [Streptomyces ghanaensis ATCC 14672] gi|291439030|ref|ZP_06578420.1| cold-shock domain-containing protein [Streptomyces ghanaensis ATCC 14672] gi|291341925|gb|EFE68881.1| cold-shock domain-containing protein [Streptomyces ghanaensis ATCC 14672] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVSFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|17547185|ref|NP_520587.1| cold shock-like transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17429487|emb|CAD16173.1| probable cold shock-like cspd transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V +D Q Sbjct: 4 GTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQ 54 >gi|120599254|ref|YP_963828.1| cold-shock DNA-binding domain-containing protein [Shewanella sp. W3-18-1] gi|146292672|ref|YP_001183096.1| cold-shock DNA-binding domain-containing protein [Shewanella putrefaciens CN-32] gi|120559347|gb|ABM25274.1| cold-shock DNA-binding protein family [Shewanella sp. W3-18-1] gi|145564362|gb|ABP75297.1| cold-shock DNA-binding protein family [Shewanella putrefaciens CN-32] gi|319425976|gb|ADV54050.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens 200] Length = 69 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI ESG DVF+H A+ S G L EGQ V++ Q + Sbjct: 6 GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 62 --AENVTII 68 >gi|297195982|ref|ZP_06913380.1| cold shock protein 1 [Streptomyces pristinaespiralis ATCC 25486] gi|197718880|gb|EDY62788.1| cold shock protein 1 [Streptomyces pristinaespiralis ATCC 25486] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q V +D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVEFDITQGPKGPQ 60 Query: 65 YSAENLKLV 73 AEN++ V Sbjct: 61 --AENVRPV 67 >gi|56696164|ref|YP_166520.1| cold shock family protein [Ruegeria pomeroyi DSS-3] gi|56677901|gb|AAV94567.1| cold shock family protein [Ruegeria pomeroyi DSS-3] Length = 68 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ + G DVF+H SAV +GL L + Q V+++ + +G+ Sbjct: 4 GTVKWFNATKGYGFIAPD---DGGKDVFVHISAVERSGLTGLADNQKVSFEMLDG-RDGR 59 Query: 65 YSAENLK 71 A ++K Sbjct: 60 KMAGDIK 66 >gi|84387543|ref|ZP_00990561.1| putative Cold shock-like protein [Vibrio splendidus 12B01] gi|86144453|ref|ZP_01062785.1| putative Cold shock-like protein [Vibrio sp. MED222] gi|84377591|gb|EAP94456.1| putative Cold shock-like protein [Vibrio splendidus 12B01] gi|85837352|gb|EAQ55464.1| putative Cold shock-like protein [Vibrio sp. MED222] Length = 70 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI+ + G DVF+H A+AS G L EGQ V+++ V+N G Sbjct: 7 GTVKWFNEEKGFGFISQD---NGGADVFVHFRAIASEGFKTLKEGQKVSFE-VENGQKGL 62 Query: 65 YSA 67 +A Sbjct: 63 QAA 65 >gi|332308080|ref|YP_004435931.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175409|gb|AEE24663.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 68 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59 +G++KW+N DKG+GFITPE + G D+F+H S + S G + L +GQ V ++ Q+ Sbjct: 3 KGTVKWFNADKGFGFITPE---DGGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQS 56 >gi|15925694|ref|NP_373228.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu50] gi|15928289|ref|NP_375822.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus N315] gi|21284352|ref|NP_647440.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus MW2] gi|57651099|ref|YP_187517.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus COL] gi|82752283|ref|YP_418024.1| cold shock protein [Staphylococcus aureus RF122] gi|148269136|ref|YP_001248079.1| cold-shock DNA-binding domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150395218|ref|YP_001317893.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus JH1] gi|151222817|ref|YP_001333639.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus str. Newman] gi|156981019|ref|YP_001443278.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu3] gi|221142463|ref|ZP_03566956.1| cold shock protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316706|ref|ZP_04839919.1| cold shock protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255007476|ref|ZP_05146077.2| cold shock protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|269204342|ref|YP_003283611.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus ED98] gi|284023028|ref|ZP_06377426.1| cold shock protein [Staphylococcus aureus subsp. aureus 132] gi|295429287|ref|ZP_06821909.1| cold shock-like protein cspLA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589211|ref|ZP_06947852.1| cold shock protein B [Staphylococcus aureus subsp. aureus MN8] gi|304379938|ref|ZP_07362667.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|2226347|gb|AAB61743.1| CspB [Staphylococcus aureus RN4220] gi|13702661|dbj|BAB43801.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus N315] gi|14248479|dbj|BAB58866.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu50] gi|21205796|dbj|BAB96488.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus MW2] gi|57285285|gb|AAW37379.1| cold shock protein, CSD family [Staphylococcus aureus subsp. aureus COL] gi|82657814|emb|CAI82269.1| cold shock protein [Staphylococcus aureus RF122] gi|147742205|gb|ABQ50503.1| cold-shock DNA-binding protein family [Staphylococcus aureus subsp. aureus JH9] gi|149947670|gb|ABR53606.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus JH1] gi|150375617|dbj|BAF68877.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus str. Newman] gi|156723154|dbj|BAF79571.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu3] gi|262076632|gb|ACY12605.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus ED98] gi|269942290|emb|CBI50705.1| cold shock protein [Staphylococcus aureus subsp. aureus TW20] gi|283471919|emb|CAQ51130.1| conserved domain protein [Staphylococcus aureus subsp. aureus ST398] gi|285818367|gb|ADC38854.1| Cold shock protein CspG [Staphylococcus aureus 04-02981] gi|295127046|gb|EFG56690.1| cold shock-like protein cspLA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577722|gb|EFH96435.1| cold shock protein B [Staphylococcus aureus subsp. aureus MN8] gi|298695962|gb|ADI99184.1| cold shock protein, CSD family [Staphylococcus aureus subsp. aureus ED133] gi|302334319|gb|ADL24512.1| cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302752582|gb|ADL66759.1| cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341518|gb|EFM07428.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436869|gb|ADQ75940.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH60] gi|312831043|emb|CBX35885.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129533|gb|EFT85525.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS03] gi|315195215|gb|EFU25603.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS00] gi|315197908|gb|EFU28241.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS01] gi|320141408|gb|EFW33251.1| cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144390|gb|EFW36155.1| cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323439708|gb|EGA97426.1| cold shock protein [Staphylococcus aureus O11] gi|323443281|gb|EGB00898.1| cold shock protein [Staphylococcus aureus O46] gi|329315425|gb|AEB89838.1| Cold shock protein [Staphylococcus aureus subsp. aureus T0131] gi|329725714|gb|EGG62193.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus 21172] gi|329731711|gb|EGG68071.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus 21189] gi|329732388|gb|EGG68738.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus 21193] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N +KG+GFI E+G DVF+H S +AS G L EGQ VT++ + Sbjct: 1 MNNGTVKWFNAEKGFGFI----EQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITE 53 >gi|294470718|gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum] Length = 263 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G + W+N KGYGFITP+ + G+++F+H+SA+ S G +LT G V + Q +GK Sbjct: 13 GKVNWFNDSKGYGFITPD---DDGEELFVHQSAILSEGFRSLTVGDSVEFAVTQG-TDGK 68 Query: 65 YSAENL 70 A N+ Sbjct: 69 TKAVNV 74 >gi|284030059|ref|YP_003379990.1| cold-shock DNA-binding domain-containing protein [Kribbella flavida DSM 17836] gi|283809352|gb|ADB31191.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM 17836] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI+ +G G DVF+H SA+A+ G L E Q V +D Q + Sbjct: 4 GTVKWFNGEKGFGFISQDG---GGADVFVHYSAIATDGFRTLDENQKVEFDLAQGPKGPQ 60 Query: 65 YSAENLKLV 73 AEN++ V Sbjct: 61 --AENVRPV 67 >gi|229029377|ref|ZP_04185462.1| Cold shock-like protein cspB [Bacillus cereus AH1271] gi|228731937|gb|EEL82834.1| Cold shock-like protein cspB [Bacillus cereus AH1271] Length = 77 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG+ DDVF+H SA+ G L EGQ V++D + + G Sbjct: 14 QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 68 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 69 PQAANVVKL 77 >gi|183602622|ref|ZP_02963987.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019] gi|241190696|ref|YP_002968090.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196102|ref|YP_002969657.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218263|gb|EDT88909.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019] gi|240249088|gb|ACS46028.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250656|gb|ACS47595.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178434|gb|ADC85680.1| Cold shock protein [Bifidobacterium animalis subsp. lactis BB-12] gi|295793685|gb|ADG33220.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium animalis subsp. lactis V9] Length = 70 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++K++N +GYGFITPE + G DVF+H S++ + G L +G LV YD D G Sbjct: 3 RGTVKFFNVGRGYGFITPE---DGGADVFVHYSSIEAEGFKALRQGDLVEYDSKPTD-KG 58 Query: 64 KYSAENLKL 72 + + +K+ Sbjct: 59 ELATRVVKI 67 >gi|169828062|ref|YP_001698220.1| cold shock protein [Lysinibacillus sphaericus C3-41] gi|168992550|gb|ACA40090.1| cold shock protein [Lysinibacillus sphaericus C3-41] Length = 71 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI EG G DVF H SA+ G +L EGQ V + +++ G Sbjct: 8 QGTVKWFNSEKGFGFIEVEG----GQDVFAHFSAIQGEGFKSLEEGQKVEFT-IEDGQRG 62 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 63 PQAANIVKL 71 >gi|319651118|ref|ZP_08005251.1| cold shock protein [Bacillus sp. 2_A_57_CT2] gi|317397172|gb|EFV77877.1| cold shock protein [Bacillus sp. 2_A_57_CT2] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N +KG+GFI + G DVF+H SA+ + G L EGQ VT++ V+ + Sbjct: 1 MNTGKVKWFNAEKGFGFI----ESSEGQDVFVHFSAIQTEGFKTLEEGQDVTFEIVEGN 55 >gi|222149268|ref|YP_002550225.1| cold shock protein [Agrobacterium vitis S4] gi|221736252|gb|ACM37215.1| cold shock protein [Agrobacterium vitis S4] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N DKG+GFITPE G DVF+H S++ +L EG V+++ Q+ GK Sbjct: 4 GTVKFFNDDKGFGFITPE---NGGTDVFVHVSSLQRGD--SLREGDKVSFEIGQDRKTGK 58 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 59 SKAENVSVL 67 >gi|212709456|ref|ZP_03317584.1| hypothetical protein PROVALCAL_00497 [Providencia alcalifaciens DSM 30120] gi|261344215|ref|ZP_05971859.1| conserved domain protein [Providencia rustigianii DSM 4541] gi|212687794|gb|EEB47322.1| hypothetical protein PROVALCAL_00497 [Providencia alcalifaciens DSM 30120] gi|282567812|gb|EFB73347.1| conserved domain protein [Providencia rustigianii DSM 4541] Length = 70 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + ++N A G Sbjct: 6 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQQVEFT-IENGAKG 61 Query: 64 KYSA 67 +A Sbjct: 62 PAAA 65 >gi|229916626|ref|YP_002885272.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b] gi|229468055|gb|ACQ69827.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b] Length = 65 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI EG G DVF+H SA+ S G +L EGQ V ++ V + G Sbjct: 3 GKVKWFNSEKGFGFIEVEG----GKDVFVHFSAIQSEGYKSLDEGQDVEFEIVDGE-RGP 57 Query: 65 YSAENLKL 72 +A +KL Sbjct: 58 QAANVVKL 65 >gi|75759683|ref|ZP_00739766.1| Cold shock protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492830|gb|EAO55963.1| Cold shock protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 77 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG+ DDVF+H SA+ G L EGQ V++D + + G Sbjct: 14 QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 68 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 69 PQAANVVKL 77 >gi|313898450|ref|ZP_07831987.1| 7.4 kDa cold shock protein [Clostridium sp. HGF2] gi|312956832|gb|EFR38463.1| 7.4 kDa cold shock protein [Clostridium sp. HGF2] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N DKGYGFIT T++G D+F+H S + ++G L EG V ++ ND Sbjct: 4 GKVKWFNADKGYGFIT----TDAGQDLFVHYSEIQTSGFRTLEEGAKVNFEINTND 55 >gi|253999063|ref|YP_003051126.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. SIP3-4] gi|313201165|ref|YP_004039823.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. MP688] gi|253985742|gb|ACT50599.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4] gi|312440481|gb|ADQ84587.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ + G+D+F H SA+AS G +L E + V++D Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSAIASNGFKSLKENERVSFD 51 >gi|258652266|ref|YP_003201422.1| cold-shock DNA-binding domain-containing protein [Nakamurella multipartita DSM 44233] gi|258555491|gb|ACV78433.1| cold-shock DNA-binding domain protein [Nakamurella multipartita DSM 44233] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KGYGFI+P+ + DVF+H SA++ G +L EGQ V ++ Q+ Sbjct: 3 QGTVKWFNAEKGYGFISPD---DGSGDVFVHYSAISGTGYKSLEEGQRVNFEVEQS 55 >gi|205373098|ref|ZP_03225902.1| CspD [Bacillus coahuilensis m4-4] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI EG+ +DVF+H SA+ G +L EGQ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGFGFIEIEGA----EDVFVHFSAIEGEGYKSLEEGQEVSFEIVEG-S 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|134099636|ref|YP_001105297.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291005458|ref|ZP_06563431.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|133912259|emb|CAM02372.1| cold-shock DNA-binding domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P+ + G DVF+H SA+ + G +L E Q V Y+ Q Sbjct: 3 QGTVKWFNAEKGFGFIAPD---DGGPDVFVHYSAIDAGGFRSLEEDQRVNYEVTQ 54 >gi|33593717|ref|NP_881361.1| putative cold-shock protein [Bordetella pertussis Tohama I] gi|33597156|ref|NP_884799.1| putative cold-shock protein [Bordetella parapertussis 12822] gi|33601000|ref|NP_888560.1| putative cold-shock protein [Bordetella bronchiseptica RB50] gi|33563790|emb|CAE43032.1| putative cold-shock protein [Bordetella pertussis Tohama I] gi|33566607|emb|CAE37865.1| putative cold-shock protein [Bordetella parapertussis] gi|33575435|emb|CAE32513.1| putative cold-shock protein [Bordetella bronchiseptica RB50] gi|332383120|gb|AEE67967.1| putative cold-shock protein [Bordetella pertussis CS] Length = 81 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + G+D+F H S++ G L EGQ V+++ +Q Sbjct: 18 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQ 68 >gi|116669616|ref|YP_830549.1| cold-shock DNA-binding protein family protein [Arthrobacter sp. FB24] gi|116609725|gb|ABK02449.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 39/54 (72%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI+P+ S++ DVF H SA+ S+G +L E Q V+++ Q Sbjct: 4 GTVKWFNAEKGFGFISPDDSSQ---DVFAHYSAINSSGFRSLEENQKVSFETEQ 54 >gi|302530604|ref|ZP_07282946.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] gi|302439499|gb|EFL11315.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KGYGFI +PEG DVF+H SA+ + G L EG V ++ VQ+ +G Sbjct: 4 GTVKWFNSEKGYGFIESPEGP-----DVFVHYSAIQADGFRTLDEGDRVEFE-VQSGRDG 57 Query: 64 KYSAENLKLV 73 + A +++ V Sbjct: 58 RSQAADVRKV 67 >gi|222149316|ref|YP_002550273.1| cold shock protein [Agrobacterium vitis S4] gi|221736300|gb|ACM37263.1| cold shock protein [Agrobacterium vitis S4] Length = 71 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N DKG+GFI P+ G D+F+H SAV ++GL L+E Q V++D + D Sbjct: 1 MAETGIVKFFNNDKGFGFIKPD---NGGADIFVHISAVQASGLNGLSENQKVSFD-TEPD 56 Query: 61 ANGK-YSAENLKL 72 GK A NL++ Sbjct: 57 RRGKGPKAVNLQI 69 >gi|167041377|gb|ABZ06130.1| putative cold-shock DNA-binding domain protein [uncultured marine microorganism HF4000_005K23] Length = 445 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KGYGFI EG + D+F+H SAV +AGL L EG+ +T++ Sbjct: 369 GEVKWFNGAKGYGFIKREGEEK---DIFVHSSAVQNAGLKYLKEGEQLTFE 416 >gi|182437305|ref|YP_001825024.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777925|ref|ZP_08237190.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465821|dbj|BAG20341.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658258|gb|EGE43104.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ V +D Q Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GADVFAHYSNIAASGFRELQEGQKVNFDVTQ 54 >gi|171778705|ref|ZP_02919801.1| hypothetical protein STRINF_00653 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282662|gb|EDT48086.1| hypothetical protein STRINF_00653 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N DKG+GFI S E+G DVF H S + S G +L +GQ V +D Q + Sbjct: 3 QGTVKWFNTDKGFGFI----SQENGADVFAHFSQIKSNGFKSLEDGQKVQFDVEQGE 55 >gi|157371292|ref|YP_001479281.1| cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] gi|270262466|ref|ZP_06190737.1| hypothetical protein SOD_c00830 [Serratia odorifera 4Rx13] gi|293395496|ref|ZP_06639780.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] gi|320539351|ref|ZP_08039020.1| putative cold-shock DNA-binding domain-containing protein [Serratia symbiotica str. Tucson] gi|157323056|gb|ABV42153.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] gi|270043150|gb|EFA16243.1| hypothetical protein SOD_c00830 [Serratia odorifera 4Rx13] gi|291422180|gb|EFE95425.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] gi|320030476|gb|EFW12486.1| putative cold-shock DNA-binding domain-containing protein [Serratia symbiotica str. Tucson] Length = 70 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + ++N A G Sbjct: 6 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQNVQFS-IENGAKG 61 Query: 64 KYSA 67 +A Sbjct: 62 PSAA 65 >gi|187478585|ref|YP_786609.1| cold shock-like protein [Bordetella avium 197N] gi|115423171|emb|CAJ49702.1| cold shock-like protein [Bordetella avium 197N] Length = 81 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + G+D+F H S++ G L EGQ V+++ +Q Sbjct: 18 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQ 68 >gi|319400565|gb|EFV88795.1| cold shock protein cspD [Staphylococcus epidermidis FRI909] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N DKG+GFI ++G+DVF+H S +A G +L EGQ V +D V+ Sbjct: 1 MNNGTVKWFNVDKGFGFI----ERDNGNDVFVHYSGIAGEGYKSLEEGQNVDFDIVE 53 >gi|126698469|ref|YP_001087366.1| cold shock protein [Clostridium difficile 630] gi|254974514|ref|ZP_05270986.1| cold shock protein [Clostridium difficile QCD-66c26] gi|255091905|ref|ZP_05321383.1| cold shock protein [Clostridium difficile CIP 107932] gi|255100004|ref|ZP_05328981.1| cold shock protein [Clostridium difficile QCD-63q42] gi|255305891|ref|ZP_05350063.1| cold shock protein [Clostridium difficile ATCC 43255] gi|255313639|ref|ZP_05355222.1| cold shock protein [Clostridium difficile QCD-76w55] gi|255516323|ref|ZP_05383999.1| cold shock protein [Clostridium difficile QCD-97b34] gi|255649422|ref|ZP_05396324.1| cold shock protein [Clostridium difficile QCD-37x79] gi|255654944|ref|ZP_05400353.1| cold shock protein [Clostridium difficile QCD-23m63] gi|260682590|ref|YP_003213875.1| cold shock protein [Clostridium difficile CD196] gi|260686190|ref|YP_003217323.1| cold shock protein [Clostridium difficile R20291] gi|296449689|ref|ZP_06891459.1| cold shock protein CspA [Clostridium difficile NAP08] gi|296877994|ref|ZP_06902013.1| cold shock protein CspA [Clostridium difficile NAP07] gi|306519503|ref|ZP_07405850.1| cold shock protein [Clostridium difficile QCD-32g58] gi|115249906|emb|CAJ67725.1| Cold shock protein [Clostridium difficile] gi|260208753|emb|CBA61608.1| cold shock protein [Clostridium difficile CD196] gi|260212206|emb|CBE02896.1| cold shock protein [Clostridium difficile R20291] gi|296261413|gb|EFH08238.1| cold shock protein CspA [Clostridium difficile NAP08] gi|296431062|gb|EFH16890.1| cold shock protein CspA [Clostridium difficile NAP07] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI+ EG DDVF+H SA+ + G L EG+ V++D Q N Sbjct: 4 GIVKWFNNEKGFGFISVEGE----DDVFVHFSAIQNDGYKTLEEGEKVSFDITQ--GNRG 57 Query: 65 YSAENLKLV 73 AEN+ + Sbjct: 58 PQAENVNRI 66 >gi|322832644|ref|YP_004212671.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|321167845|gb|ADW73544.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] Length = 69 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + ++N A Sbjct: 3 MMKGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQNVQFT-IENGA 58 Query: 62 NGKYSA 67 G +A Sbjct: 59 KGPSAA 64 >gi|260655196|ref|ZP_05860684.1| conserved domain protein [Jonquetella anthropi E3_33 E1] gi|260630118|gb|EEX48312.1| conserved domain protein [Jonquetella anthropi E3_33 E1] Length = 65 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFIT TE G DVF+H SA+ G +L E V +D V+ + G Sbjct: 2 KGTVKWFNATKGYGFIT----TEEGKDVFVHFSAINMTGYKSLDENDSVEFDVVEGE-KG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|302535905|ref|ZP_07288247.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302444800|gb|EFL16616.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 69 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQKGP 58 Query: 64 KYSAENLKLVP 74 + A+ +KL P Sbjct: 59 Q--ADMVKLAP 67 >gi|297583376|ref|YP_003699156.1| cold-shock DNA-binding domain-containing protein [Bacillus selenitireducens MLS10] gi|297141833|gb|ADH98590.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens MLS10] Length = 65 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFNAEKGFGFI----EREDGEDVFVHYSAIDQEGFKTLDEGQDVEFEVVEG-ARG 56 Query: 64 KYSAENLKL 72 ++ +KL Sbjct: 57 PQASNVVKL 65 >gi|163942598|ref|YP_001647482.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229014070|ref|ZP_04171193.1| Cold shock protein cspB [Bacillus mycoides DSM 2048] gi|229062554|ref|ZP_04199865.1| Cold shock protein cspB [Bacillus cereus AH603] gi|229135709|ref|ZP_04264485.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196] gi|229169605|ref|ZP_04297308.1| Cold shock protein cspB [Bacillus cereus AH621] gi|2493764|sp|Q45099|CSPD_BACCE RecName: Full=Cold shock-like protein CspD gi|1405476|emb|CAA63610.1| CspD protein [Bacillus cereus] gi|163864795|gb|ABY45854.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] gi|228613880|gb|EEK71002.1| Cold shock protein cspB [Bacillus cereus AH621] gi|228647746|gb|EEL03805.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196] gi|228716728|gb|EEL68422.1| Cold shock protein cspB [Bacillus cereus AH603] gi|228747216|gb|EEL97096.1| Cold shock protein cspB [Bacillus mycoides DSM 2048] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI EG G+DVF+H SA+ G L EGQ V+++ V D Sbjct: 1 MQTGKVKWFNGEKGFGFIEVEG----GEDVFVHFSAIQGDGFKTLEEGQEVSFEIV--DG 54 Query: 62 NGKYSAENL 70 N A N+ Sbjct: 55 NRGPQAANV 63 >gi|171058345|ref|YP_001790694.1| cold-shock DNA-binding domain-containing protein [Leptothrix cholodnii SP-6] gi|170775790|gb|ACB33929.1| cold-shock DNA-binding domain protein [Leptothrix cholodnii SP-6] Length = 79 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N KG+GFI PE E G+DVF H SA+ G L +G V +D V + G Sbjct: 3 RGIVKWFNDVKGFGFIEPE---EGGEDVFAHFSAIQMEGFRTLKQGSSVDFDLV-DGPKG 58 Query: 64 KYSAENLK 71 K A+N++ Sbjct: 59 KL-AQNIR 65 >gi|304408316|ref|ZP_07389964.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] gi|304342785|gb|EFM08631.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG G DVF+H SA+ G L EGQ V + Q Sbjct: 1 MQQGTVKWFNAEKGFGFIEVEG----GSDVFVHFSAIQGDGFKTLDEGQRVEFTIAQ--G 54 Query: 62 NGKYSAENL 70 N AEN+ Sbjct: 55 NRGPQAENV 63 >gi|298505030|gb|ADI83753.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens KN400] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GF+ E+G DVF+H SA+ +G +L EG+ VT+D V N G Sbjct: 3 KGRVKWFNDSKGFGFL----EQENGVDVFVHFSAITGSGFKSLAEGEEVTFDVV-NGPKG 57 Query: 64 KYSAENLKL 72 +A KL Sbjct: 58 LQAANVCKL 66 >gi|290958273|ref|YP_003489455.1| cold shock protein [Streptomyces scabiei 87.22] gi|260647799|emb|CBG70904.1| cold shock protein [Streptomyces scabiei 87.22] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q V++D Q + Sbjct: 4 GTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQQVSFDVTQGPKGPQ 60 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 61 --AENVTPV 67 >gi|157375749|ref|YP_001474349.1| cold-shock DNA-binding domain-containing protein [Shewanella sediminis HAW-EB3] gi|157318123|gb|ABV37221.1| cold-shock DNA-binding domain protein [Shewanella sediminis HAW-EB3] Length = 68 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI ESG DVF+H A+ S G L EGQ V + Q + Sbjct: 6 GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ +V Sbjct: 62 --AENVTIV 68 >gi|328462059|gb|EGF34235.1| putative cold shock protein [Lactobacillus helveticus MTCC 5463] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N DKG+GFIT GS DVF+H SA+ + G +L EGQ V+YD Q Sbjct: 1 MQTGTVKWFNADKGFGFIT--GSDNK--DVFVHFSAIKTDGFKSLEEGQKVSYDVEQ 53 >gi|72160788|ref|YP_288445.1| cold-shock DNA-binding protein family protein [Thermobifida fusca YX] gi|71914520|gb|AAZ54422.1| cold-shock DNA-binding protein family [Thermobifida fusca YX] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +G++KW+N +KG+GFI +G G DVF+H SA+A G NL E Q V ++ V Sbjct: 3 QGTVKWFNSEKGFGFIAVDGG---GPDVFVHYSAIAGTGFRNLEENQAVEFEIV 53 >gi|88799572|ref|ZP_01115148.1| Cold shock protein [Reinekea sp. MED297] gi|88777657|gb|EAR08856.1| Cold shock protein [Reinekea sp. MED297] Length = 69 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ VT+ Q + Sbjct: 7 GTVKWFNETKGFGFI----EQENGPDVFAHFSAIQGTGFKTLAEGQKVTFTITQGQKGPQ 62 Query: 65 YSAENLKLV 73 AEN++ V Sbjct: 63 --AENIEKV 69 >gi|299138194|ref|ZP_07031374.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX8] gi|322436378|ref|YP_004218590.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|298600124|gb|EFI56282.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX8] gi|321164105|gb|ADW69810.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 40/57 (70%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KG+GFI S ++G+DVF+H SA+ S G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFI----SRQNGEDVFVHYSAINSNGFKSLQEGQAVQFNVVK 53 >gi|37525256|ref|NP_928600.1| cold shock protein CspE [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784683|emb|CAE13583.1| cold shock-like protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 70 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N KG+GFITPE + DVF+H SA+ G L EGQ V ++ Sbjct: 6 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQITGFKTLAEGQKVEFE 54 >gi|310829592|ref|YP_003961949.1| cold shock protein [Eubacterium limosum KIST612] gi|308741326|gb|ADO38986.1| cold shock protein [Eubacterium limosum KIST612] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N DKG+GFI S E GDDVF H S++ G L +G VT+D Q Sbjct: 1 MNNGTVKWFNGDKGFGFI----SREDGDDVFEHFSSIVGDGFKTLNDGDRVTFDTEQ 53 >gi|294630558|ref|ZP_06709118.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292833891|gb|EFF92240.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q + Sbjct: 4 GTVKWFNAEKGFGFIQQDG---GGPDVFAHYSNIAAQGFRELQEGQRVNFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|59713778|ref|YP_206553.1| cold shock protein [Vibrio fischeri ES114] gi|197337528|ref|YP_002158152.1| hypothetical protein VFMJ11_A0603 [Vibrio fischeri MJ11] gi|59482026|gb|AAW87665.1| cold shock protein [Vibrio fischeri ES114] gi|197314780|gb|ACH64229.1| conserved domain protein [Vibrio fischeri MJ11] Length = 68 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI + E+G DVF H S + S G L EGQ V++D Q Sbjct: 6 GTVKWFNEEKGFGFI----AQENGPDVFAHFSQIQSEGFKTLKEGQAVSFDVEQ 55 >gi|78221561|ref|YP_383308.1| cold-shock DNA-binding protein family protein [Geobacter metallireducens GS-15] gi|78192816|gb|ABB30583.1| cold-shock DNA-binding protein family [Geobacter metallireducens GS-15] Length = 66 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+ E+G+DVF+H SA+ G +LTEG VT+D V+ Sbjct: 4 GTVKWFNDSKGFGFL----EQENGEDVFVHFSAINGDGFKSLTEGDRVTFDVVK 53 >gi|30019750|ref|NP_831381.1| cold shock protein [Bacillus cereus ATCC 14579] gi|206970763|ref|ZP_03231715.1| cold shock protein CspB [Bacillus cereus AH1134] gi|218233734|ref|YP_002366385.1| cold shock protein CspB [Bacillus cereus B4264] gi|218896633|ref|YP_002445044.1| cold shock protein CspB [Bacillus cereus G9842] gi|228900283|ref|ZP_04064513.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222] gi|228907338|ref|ZP_04071196.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 200] gi|228920413|ref|ZP_04083758.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228938814|ref|ZP_04101414.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952082|ref|ZP_04114177.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957979|ref|ZP_04119716.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964684|ref|ZP_04125791.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228971695|ref|ZP_04132316.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978304|ref|ZP_04138681.1| Cold shock-like protein cspB [Bacillus thuringiensis Bt407] gi|229043455|ref|ZP_04191165.1| Cold shock-like protein cspB [Bacillus cereus AH676] gi|229069255|ref|ZP_04202545.1| Cold shock-like protein cspB [Bacillus cereus F65185] gi|229078885|ref|ZP_04211437.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2] gi|229109158|ref|ZP_04238757.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15] gi|229127029|ref|ZP_04256028.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4] gi|229144315|ref|ZP_04272721.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST24] gi|229149903|ref|ZP_04278131.1| Cold shock-like protein cspB [Bacillus cereus m1550] gi|229172343|ref|ZP_04299903.1| Cold shock-like protein cspB [Bacillus cereus MM3] gi|229189784|ref|ZP_04316797.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876] gi|296502284|ref|YP_003663984.1| cold shock protein [Bacillus thuringiensis BMB171] gi|29895295|gb|AAP08582.1| Cold shock protein [Bacillus cereus ATCC 14579] gi|206734399|gb|EDZ51569.1| cold shock protein CspB [Bacillus cereus AH1134] gi|218161691|gb|ACK61683.1| cold shock protein CspB [Bacillus cereus B4264] gi|218544906|gb|ACK97300.1| cold shock protein CspB [Bacillus cereus G9842] gi|228593698|gb|EEK51504.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876] gi|228611139|gb|EEK68401.1| Cold shock-like protein cspB [Bacillus cereus MM3] gi|228633584|gb|EEK90185.1| Cold shock-like protein cspB [Bacillus cereus m1550] gi|228639102|gb|EEK95526.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST24] gi|228656382|gb|EEL12221.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4] gi|228674168|gb|EEL29413.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15] gi|228704299|gb|EEL56733.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2] gi|228713742|gb|EEL65627.1| Cold shock-like protein cspB [Bacillus cereus F65185] gi|228725833|gb|EEL77080.1| Cold shock-like protein cspB [Bacillus cereus AH676] gi|228781321|gb|EEM29522.1| Cold shock-like protein cspB [Bacillus thuringiensis Bt407] gi|228787785|gb|EEM35743.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794934|gb|EEM42433.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228801686|gb|EEM48566.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807614|gb|EEM54138.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820663|gb|EEM66688.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228839043|gb|EEM84339.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852199|gb|EEM96995.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 200] gi|228859318|gb|EEN03748.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222] gi|296323336|gb|ADH06264.1| cold shock protein [Bacillus thuringiensis BMB171] gi|326939318|gb|AEA15214.1| cold shock protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 65 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG+ DDVF+H SA+ G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|46199928|ref|YP_005595.1| cold shock protein [Thermus thermophilus HB27] gi|55980328|ref|YP_143625.1| cold shock protein [Thermus thermophilus HB8] gi|46197555|gb|AAS81968.1| cold shock protein [Thermus thermophilus HB27] gi|55771741|dbj|BAD70182.1| cold shock protein [Thermus thermophilus HB8] Length = 68 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 5/63 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G +KW+N +KGYGFI E G DVF+H SA+ + G L+EG+ V ++ V+ Sbjct: 1 MNKGIVKWFNAEKGYGFI----QQEEGPDVFVHFSAIEADGFRTLSEGERVEFE-VEPGR 55 Query: 62 NGK 64 NGK Sbjct: 56 NGK 58 >gi|107027431|ref|YP_624942.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia AU 1054] gi|105896805|gb|ABF79969.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia AU 1054] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 7/71 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFITP+ GDD+F H S + G L EGQ V+Y+ NG Sbjct: 4 GTVKWFNDNKGFGFITPD---SGGDDLFAHFSEIRGDGFKTLAEGQKVSYET----KNGP 56 Query: 65 YSAENLKLVPK 75 + +VP+ Sbjct: 57 KGLQASNIVPQ 67 >gi|332671934|ref|YP_004454942.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340972|gb|AEE47555.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI P+ + G DVF H SA+ S+G +L E Q V +D Q Sbjct: 4 GTVKWFNAEKGFGFIAPD---DGGPDVFAHYSAIQSSGYRSLEENQKVQFDVTQ 54 >gi|182436795|ref|YP_001824514.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|239943459|ref|ZP_04695396.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998] gi|239989914|ref|ZP_04710578.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379] gi|282860706|ref|ZP_06269772.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|291446930|ref|ZP_06586320.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|297192805|ref|ZP_06910203.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|326777390|ref|ZP_08236655.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465311|dbj|BAG19831.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|282564442|gb|EFB69978.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|291349877|gb|EFE76781.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|297151505|gb|EFH31205.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|320009215|gb|ADW04065.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] gi|326657723|gb|EGE42569.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q+V +D Q Sbjct: 4 GTVKWFNAEKGFGFIAQDGG---GPDVFVHYSAINASGFRSLEENQVVNFDVTQ 54 >gi|116696141|ref|YP_841717.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] gi|113530640|emb|CAJ96987.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] Length = 67 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G++KW+N KG+GFITP+ E G+D+F H SA+ G +L EGQ V Y Sbjct: 1 METGTVKWFNDAKGFGFITPD---EGGNDLFAHFSAIEGNGFKSLKEGQKVRY 50 >gi|87119411|ref|ZP_01075308.1| cold-shock DNA-binding domain protein [Marinomonas sp. MED121] gi|86164887|gb|EAQ66155.1| cold-shock DNA-binding domain protein [Marinomonas sp. MED121] Length = 97 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI EG G DVF+H A+ G L EGQ VT++ Q + Sbjct: 35 GIVKWFNDEKGFGFIEREG----GPDVFVHFRAINGTGRRTLQEGQKVTFEVTQGQKGPQ 90 Query: 65 YSAENLKLV 73 AEN+ +V Sbjct: 91 --AENVSIV 97 >gi|49487482|ref|YP_044703.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253730390|ref|ZP_04864555.1| cold-shock protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257793529|ref|ZP_05642508.1| cold shock protein CspB [Staphylococcus aureus A9781] gi|258411165|ref|ZP_05681444.1| cold shock protein cspB [Staphylococcus aureus A9763] gi|258420930|ref|ZP_05683864.1| cold shock protein [Staphylococcus aureus A9719] gi|258438570|ref|ZP_05689793.1| cold shock protein [Staphylococcus aureus A9299] gi|258443974|ref|ZP_05692312.1| cold shock protein [Staphylococcus aureus A8115] gi|258446209|ref|ZP_05694369.1| cold shock protein [Staphylococcus aureus A6300] gi|258449132|ref|ZP_05697238.1| cold shock protein [Staphylococcus aureus A6224] gi|258454390|ref|ZP_05702358.1| cold shock protein cspB [Staphylococcus aureus A5937] gi|282894269|ref|ZP_06302499.1| cold shock protein cspLA [Staphylococcus aureus A8117] gi|282927740|ref|ZP_06335354.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A10102] gi|295406853|ref|ZP_06816657.1| cold shock protein [Staphylococcus aureus A8819] gi|297245888|ref|ZP_06929750.1| cold shock protein [Staphylococcus aureus A8796] gi|49245925|emb|CAG44406.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253725870|gb|EES94599.1| cold-shock protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257787501|gb|EEV25841.1| cold shock protein CspB [Staphylococcus aureus A9781] gi|257840050|gb|EEV64515.1| cold shock protein cspB [Staphylococcus aureus A9763] gi|257843120|gb|EEV67535.1| cold shock protein [Staphylococcus aureus A9719] gi|257848129|gb|EEV72121.1| cold shock protein [Staphylococcus aureus A9299] gi|257850858|gb|EEV74802.1| cold shock protein [Staphylococcus aureus A8115] gi|257855035|gb|EEV77978.1| cold shock protein [Staphylococcus aureus A6300] gi|257857565|gb|EEV80460.1| cold shock protein [Staphylococcus aureus A6224] gi|257863484|gb|EEV86244.1| cold shock protein cspB [Staphylococcus aureus A5937] gi|282590500|gb|EFB95578.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A10102] gi|282763314|gb|EFC03444.1| cold shock protein cspLA [Staphylococcus aureus A8117] gi|294968318|gb|EFG44343.1| cold shock protein [Staphylococcus aureus A8819] gi|297177253|gb|EFH36506.1| cold shock protein [Staphylococcus aureus A8796] Length = 75 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N +KG+GFI E+G DVF+H S +AS G L EGQ VT++ + Sbjct: 10 MNNGTVKWFNAEKGFGFI----EQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITE 62 >gi|88856605|ref|ZP_01131262.1| cold shock protein [marine actinobacterium PHSC20C1] gi|88814259|gb|EAR24124.1| cold shock protein [marine actinobacterium PHSC20C1] Length = 67 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI PE + DVF H SA+A+ G +L E Q V +D Q + Sbjct: 4 GTVKWFNAEKGFGFIAPE---DGSPDVFAHYSAIATNGYKSLDENQKVEFDITQGPKGPQ 60 Query: 65 YSAENLKLV 73 AEN++ + Sbjct: 61 --AENIRPI 67 >gi|329941300|ref|ZP_08290579.1| cold-shock protein [Streptomyces griseoaurantiacus M045] gi|329299831|gb|EGG43730.1| cold-shock protein [Streptomyces griseoaurantiacus M045] Length = 67 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSNIAAQGFRELLEGQKVSFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|291166639|gb|EFE28685.1| hypothetical protein HMPREF0389_00602 [Filifactor alocis ATCC 35896] Length = 66 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI+ EG +DVF+H SA+ + G L EGQ V ++ V + A Sbjct: 1 MKQGKVKWFNAEKGFGFISVEGE----NDVFVHFSAIQTEGFKTLEEGQDVEFEIV-DGA 55 Query: 62 NGKYSAENLKL 72 G ++ KL Sbjct: 56 RGPQASNVTKL 66 >gi|219882627|ref|YP_002477791.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|219861633|gb|ACL41974.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] Length = 67 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI P+ + DVF H SA+AS+G +L E Q V +D Q + Sbjct: 4 GTVKWFNAEKGFGFIAPDDGSA---DVFAHYSAIASSGYRSLDENQKVQFDVTQGPKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENIQ 65 >gi|54303515|ref|YP_133508.1| putative cold shock-like protein [Photobacterium profundum SS9] gi|46916945|emb|CAG23708.1| putative Cold shock-like protein [Photobacterium profundum SS9] Length = 69 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+A+ G L EGQ V++D Q Sbjct: 6 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIATEGFKTLAEGQKVSFDVEQ 56 >gi|304395415|ref|ZP_07377298.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|308185821|ref|YP_003929952.1| Cold shock-like protein cspG (CPS-G) [Pantoea vagans C9-1] gi|304356709|gb|EFM21073.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|308056331|gb|ADO08503.1| Cold shock-like protein cspG (CPS-G) [Pantoea vagans C9-1] Length = 70 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW+N +KG+GFI+P + DVF+H SA+ +L EGQ V + V+N A G Sbjct: 6 RGTVKWFNAEKGFGFISP---ADGSKDVFVHFSAIQGTDFRSLDEGQQVEFT-VENGAKG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVVGL 70 >gi|257095586|ref|YP_003169227.1| cold-shock DNA-binding domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048110|gb|ACV37298.1| cold-shock DNA-binding domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 67 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ +E D+F H SA+ G L EG+ V++D Q Sbjct: 4 GTVKWFNDAKGFGFITPDDGSE---DLFAHFSAITMGGFKTLKEGEKVSFDVTQ 54 >gi|253733849|ref|ZP_04868014.1| cold-shock protein [Staphylococcus aureus subsp. aureus TCH130] gi|297209461|ref|ZP_06925859.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911485|ref|ZP_07128934.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH70] gi|253728152|gb|EES96881.1| cold-shock protein [Staphylococcus aureus subsp. aureus TCH130] gi|296885922|gb|EFH24857.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887664|gb|EFK82860.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH70] Length = 71 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N +KG+GFI E+G DVF+H S +AS G L EGQ VT++ + Sbjct: 6 MNNGTVKWFNAEKGFGFI----EQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITE 58 >gi|197119555|ref|YP_002139982.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|253699707|ref|YP_003020896.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] gi|197088915|gb|ACH40186.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|251774557|gb|ACT17138.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] Length = 66 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI ++GDDVF+H SA+ G +L EG VT+D V+ Sbjct: 4 GTVKWFNDSKGFGFI----EQDNGDDVFVHFSAITGDGFKSLAEGDSVTFDVVK 53 >gi|2493762|sp|Q45097|CSPB_BACCE RecName: Full=Cold shock-like protein CspB gi|1405472|emb|CAA63608.1| CspB protein [Bacillus cereus] Length = 65 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFI EGS +DVF+H SA+ S G L EGQ V++D + Sbjct: 3 GKVKWFNNEKGFGFIEMEGS----EDVFVHFSAIQSDGYKALEEGQEVSFDITE 52 >gi|310825508|ref|YP_003957866.1| cold-shock DNA-binding domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309398580|gb|ADO76039.1| Cold-shock DNA-binding domain protein [Stigmatella aurantiaca DW4/3-1] Length = 67 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT +G G+DVF H +A+ + G +LTEGQ V ++ + Sbjct: 4 GVVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQADGFRSLTEGQRVEFEVSRGPKG-- 58 Query: 65 YSAENLKLV 73 A+N+K + Sbjct: 59 LQAQNVKPI 67 >gi|320105861|ref|YP_004181451.1| cold-shock DNA-binding domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924382|gb|ADV81457.1| cold-shock DNA-binding domain protein [Terriglobus saanensis SP1PR4] Length = 66 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KG+GF+ S +G+DVF+H SA+ S+G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFV----SRANGEDVFVHYSAITSSGFKSLQEGQAVQFNVVK 53 >gi|49484900|ref|YP_042124.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252] gi|87160637|ref|YP_495273.1| cold shock protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196660|ref|YP_501491.1| cold shock protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|257424187|ref|ZP_05600616.1| cold shock protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426864|ref|ZP_05603266.1| cold shock protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257429500|ref|ZP_05605887.1| cold shock protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432147|ref|ZP_05608510.1| cold shock protein [Staphylococcus aureus subsp. aureus E1410] gi|257435108|ref|ZP_05611159.1| cold shock protein [Staphylococcus aureus subsp. aureus M876] gi|258423247|ref|ZP_05686139.1| cold shock protein [Staphylococcus aureus A9635] gi|258451377|ref|ZP_05699408.1| cold shock protein [Staphylococcus aureus A5948] gi|282902622|ref|ZP_06310515.1| conserved domain protein [Staphylococcus aureus subsp. aureus C160] gi|282907038|ref|ZP_06314886.1| cold shock protein beta-ribbon CspA family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282910016|ref|ZP_06317824.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912264|ref|ZP_06320060.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WBG10049] gi|282912904|ref|ZP_06320696.1| conserved domain protein [Staphylococcus aureus subsp. aureus M899] gi|282918059|ref|ZP_06325809.1| cold shock protein [Staphylococcus aureus subsp. aureus D139] gi|282920709|ref|ZP_06328428.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A9765] gi|282921281|ref|ZP_06328999.1| cold shock protein [Staphylococcus aureus subsp. aureus C427] gi|282922532|ref|ZP_06330222.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus C101] gi|283767781|ref|ZP_06340696.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus aureus subsp. aureus H19] gi|283959475|ref|ZP_06376916.1| conserved domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293497957|ref|ZP_06665811.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus 58-424] gi|293511547|ref|ZP_06670241.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293550156|ref|ZP_06672828.1| conserved domain protein [Staphylococcus aureus subsp. aureus M1015] gi|294849818|ref|ZP_06790558.1| cold shock protein [Staphylococcus aureus A9754] gi|49243029|emb|CAG41763.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252] gi|87126611|gb|ABD21125.1| cold shock protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87204218|gb|ABD32028.1| cold shock protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|257273205|gb|EEV05307.1| cold shock protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276495|gb|EEV07946.1| cold shock protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279981|gb|EEV10568.1| cold shock protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283026|gb|EEV13158.1| cold shock protein [Staphylococcus aureus subsp. aureus E1410] gi|257285704|gb|EEV15820.1| cold shock protein [Staphylococcus aureus subsp. aureus M876] gi|257846576|gb|EEV70598.1| cold shock protein [Staphylococcus aureus A9635] gi|257860907|gb|EEV83724.1| cold shock protein [Staphylococcus aureus A5948] gi|282314753|gb|EFB45139.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus C101] gi|282315696|gb|EFB46080.1| cold shock protein [Staphylococcus aureus subsp. aureus C427] gi|282318344|gb|EFB48704.1| cold shock protein [Staphylococcus aureus subsp. aureus D139] gi|282323004|gb|EFB53323.1| conserved domain protein [Staphylococcus aureus subsp. aureus M899] gi|282323960|gb|EFB54276.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WBG10049] gi|282326082|gb|EFB56387.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329937|gb|EFB59458.1| cold shock protein beta-ribbon CspA family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282594117|gb|EFB99105.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A9765] gi|282597081|gb|EFC02040.1| conserved domain protein [Staphylococcus aureus subsp. aureus C160] gi|283461660|gb|EFC08744.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus aureus subsp. aureus H19] gi|283789067|gb|EFC27894.1| conserved domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290919203|gb|EFD96279.1| conserved domain protein [Staphylococcus aureus subsp. aureus M1015] gi|291096888|gb|EFE27146.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus 58-424] gi|291465505|gb|EFF08037.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|294823366|gb|EFG39795.1| cold shock protein [Staphylococcus aureus A9754] Length = 75 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N +KG+GFI E+G DVF+H S +AS G L EGQ VT++ + Sbjct: 10 MNNGTVKWFNAEKGFGFI----EQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITE 62 >gi|325263633|ref|ZP_08130367.1| conserved domain protein [Clostridium sp. D5] gi|324031342|gb|EGB92623.1| conserved domain protein [Clostridium sp. D5] Length = 67 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N KG+GFIT + G+DVF+H S +A G L +GQ VT+D Q Sbjct: 1 MNNGTVKWFNAQKGFGFIT---NAADGEDVFVHFSGLAMDGFKTLEDGQNVTFDITQ 54 >gi|297160336|gb|ADI10048.1| cold shock protein [Streptomyces bingchenggensis BCW-1] Length = 67 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q G+ Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELHEGQKVSFDVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 57 KGPQAENIVP 66 >gi|259418300|ref|ZP_05742218.1| conserved domain protein [Silicibacter sp. TrichCH4B] gi|259345695|gb|EEW57539.1| conserved domain protein [Silicibacter sp. TrichCH4B] Length = 68 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V Y+ + +G+ Sbjct: 4 GTVKWFNTTKGYGFIEPD---EGGKDVFVHISAVERSGLTGLADNQKVGYELSEG-RDGR 59 Query: 65 YSAENLK 71 A +++ Sbjct: 60 QMAGDIR 66 >gi|307331143|ref|ZP_07610270.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306883223|gb|EFN14282.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q G+ Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELQEGQKVNFDVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 57 KGPQAENIVP 66 >gi|90581455|ref|ZP_01237249.1| putative Cold shock-like protein [Vibrio angustum S14] gi|90437316|gb|EAS62513.1| putative Cold shock-like protein [Vibrio angustum S14] Length = 70 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GF+T + G DVF+H A+AS G L EGQ V++D Q Sbjct: 7 GLVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQ 57 >gi|325267631|ref|ZP_08134283.1| cold shock transcription regulator protein [Kingella denitrificans ATCC 33394] gi|324980981|gb|EGC16641.1| cold shock transcription regulator protein [Kingella denitrificans ATCC 33394] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D Sbjct: 4 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFD 51 >gi|323489356|ref|ZP_08094586.1| cold shock protein [Planococcus donghaensis MPA1U2] gi|323396997|gb|EGA89813.1| cold shock protein [Planococcus donghaensis MPA1U2] Length = 69 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFI GDDVF+H + + G LTEG+ V++D + + Sbjct: 1 MNQGTVKWFNSEKGYGFI----EYNDGDDVFVHFTGIQGDGFRTLTEGKTVSFDIIDGN- 55 Query: 62 NGKYSAENLKLVPK 75 G +A +++ P+ Sbjct: 56 RGPQAANVIEVDPE 69 >gi|229160646|ref|ZP_04288640.1| Cold shock-like protein cspB [Bacillus cereus R309803] gi|228622845|gb|EEK79677.1| Cold shock-like protein cspB [Bacillus cereus R309803] Length = 65 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG+ DDVF+H SA+ G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIEIEGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|166032459|ref|ZP_02235288.1| hypothetical protein DORFOR_02174 [Dorea formicigenerans ATCC 27755] gi|166026816|gb|EDR45573.1| hypothetical protein DORFOR_02174 [Dorea formicigenerans ATCC 27755] Length = 65 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KGYGFI S ESG+DVF+H S + G +L EGQ V +D + Sbjct: 2 KGTVKWFNNQKGYGFI----SDESGNDVFVHYSGLNMEGFKSLEEGQEVEFDVTE 52 >gi|119945576|ref|YP_943256.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119864180|gb|ABM03657.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q Sbjct: 6 QGTVKWFNESKGFGFI----EQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQGQKGP 61 Query: 64 KYSAENL 70 + AEN+ Sbjct: 62 Q--AENI 66 >gi|729219|sp|P41018|CSPB_BACGO RecName: Full=Cold shock protein CspB gi|456240|emb|CAA51791.1| major cold shock protein (CspB) [Sporosarcina globispora] gi|740005|prf||2004289B cold shock protein Length = 57 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 IKW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 IKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKCLEEGQAVSFEIVEGN 50 >gi|89072407|ref|ZP_01158986.1| cold shock protein [Photobacterium sp. SKA34] gi|90577241|ref|ZP_01233052.1| cold shock protein [Vibrio angustum S14] gi|89051939|gb|EAR57391.1| cold shock protein [Photobacterium sp. SKA34] gi|90440327|gb|EAS65507.1| cold shock protein [Vibrio angustum S14] Length = 69 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 6 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 56 >gi|218902814|ref|YP_002450648.1| cold shock protein CspB [Bacillus cereus AH820] gi|218536202|gb|ACK88600.1| cold shock protein CspB [Bacillus cereus AH820] Length = 65 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +KW+N +KG+GFI EG+ DDVF+H SA+ G L EGQ V++D + + Sbjct: 2 QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGEGYKALEEGQEVSFDITEGN 54 >gi|104774747|ref|YP_619727.1| cold shock protein A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514883|ref|YP_813789.1| cold shock protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|313124689|ref|YP_004034948.1| cold shock-like protein, cspa family [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|21633215|gb|AAM52983.1| CspA protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423828|emb|CAI98855.1| Cold shock protein A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094198|gb|ABJ59351.1| cold-shock DNA-binding protein family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|312281252|gb|ADQ61971.1| cold shock-like protein, CspA family [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325126587|gb|ADY85917.1| cold shock protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] gi|325685001|gb|EGD27141.1| cold shock protein CspA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 65 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 9/74 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT S DVF+H S++ + G +L EGQ V+YD Q Sbjct: 1 MQNGTVKWFNADKGFGFITG-----SDGDVFVHFSSIKTNGFKSLEEGQKVSYDVEQ--- 52 Query: 62 NGKYSAENLKLVPK 75 G + +VP+ Sbjct: 53 -GNRGPQATNVVPQ 65 >gi|56461593|ref|YP_156874.1| cold shock protein [Idiomarina loihiensis L2TR] gi|56180603|gb|AAV83325.1| Cold shock protein [Idiomarina loihiensis L2TR] Length = 69 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N KG+GFI E+G DVF H SA++S G LTEGQ V + Q Sbjct: 7 GSVKWFNEAKGFGFI----ERENGADVFAHFSAISSDGFKTLTEGQRVEFAVTQ 56 >gi|28275223|ref|NP_717259.2| cold shock domain-contain protein [Shewanella oneidensis MR-1] Length = 69 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V+Y+ Q Sbjct: 6 GVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSDGFKTLAEGQKVSYEVEQ 56 >gi|145219125|ref|YP_001129834.1| cold-shock DNA-binding protein family protein [Prosthecochloris vibrioformis DSM 265] gi|145205289|gb|ABP36332.1| cold-shock DNA-binding protein family [Chlorobium phaeovibrioides DSM 265] Length = 69 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N +KGYGFI G DVF+H SA+ +G L EGQ VT + Q D Sbjct: 6 EGTVKWFNEEKGYGFI----QQSEGKDVFVHYSAINGSGRKTLVEGQKVTMEVSQGD 58 >gi|30262422|ref|NP_844799.1| cold shock protein CspA [Bacillus anthracis str. Ames] gi|42781516|ref|NP_978763.1| cold shock protein CspA [Bacillus cereus ATCC 10987] gi|47527715|ref|YP_019064.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor'] gi|47570638|ref|ZP_00241249.1| cold-shock domain family protein-related protein [Bacillus cereus G9241] gi|49185266|ref|YP_028518.1| cold shock protein CspA [Bacillus anthracis str. Sterne] gi|49477693|ref|YP_036543.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143060|ref|YP_083768.1| cold shock protein [Bacillus cereus E33L] gi|118477820|ref|YP_894971.1| cold-shock DNA-binding protein family protein [Bacillus thuringiensis str. Al Hakam] gi|170687065|ref|ZP_02878284.1| cold shock protein CspA [Bacillus anthracis str. A0465] gi|177649670|ref|ZP_02932672.1| cold shock protein CspA [Bacillus anthracis str. A0174] gi|190565634|ref|ZP_03018554.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I] gi|196033810|ref|ZP_03101221.1| cold shock protein CspA [Bacillus cereus W] gi|196039884|ref|ZP_03107187.1| cold shock protein CspA [Bacillus cereus NVH0597-99] gi|196043556|ref|ZP_03110794.1| cold shock protein CspA [Bacillus cereus 03BB108] gi|206973608|ref|ZP_03234526.1| cold shock protein CspA [Bacillus cereus H3081.97] gi|217959917|ref|YP_002338473.1| cold shock protein CspA [Bacillus cereus AH187] gi|218903556|ref|YP_002451390.1| cold shock protein CspA [Bacillus cereus AH820] gi|222096006|ref|YP_002530063.1| cold shock protein [Bacillus cereus Q1] gi|225864386|ref|YP_002749764.1| cold shock protein CspA [Bacillus cereus 03BB102] gi|227814766|ref|YP_002814775.1| cold shock protein CspA [Bacillus anthracis str. CDC 684] gi|228915013|ref|ZP_04078615.1| Cold shock protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927471|ref|ZP_04090526.1| Cold shock protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933740|ref|ZP_04096587.1| Cold shock protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946025|ref|ZP_04108365.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228985510|ref|ZP_04145667.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229030123|ref|ZP_04186185.1| Cold shock protein cspB [Bacillus cereus AH1271] gi|229091398|ref|ZP_04222612.1| Cold shock protein cspB [Bacillus cereus Rock3-42] gi|229121965|ref|ZP_04251183.1| Cold shock protein cspB [Bacillus cereus 95/8201] gi|229139109|ref|ZP_04267686.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26] gi|229155998|ref|ZP_04284099.1| Cold shock protein cspB [Bacillus cereus ATCC 4342] gi|229184633|ref|ZP_04311834.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1] gi|229196632|ref|ZP_04323376.1| Cold shock protein cspB [Bacillus cereus m1293] gi|229602363|ref|YP_002866754.1| cold shock protein CspA [Bacillus anthracis str. A0248] gi|254684998|ref|ZP_05148858.1| cold shock protein CspA [Bacillus anthracis str. CNEVA-9066] gi|254722404|ref|ZP_05184192.1| cold shock protein CspA [Bacillus anthracis str. A1055] gi|254737445|ref|ZP_05195149.1| cold shock protein CspA [Bacillus anthracis str. Western North America USA6153] gi|254743370|ref|ZP_05201055.1| cold shock protein CspA [Bacillus anthracis str. Kruger B] gi|254751761|ref|ZP_05203798.1| cold shock protein CspA [Bacillus anthracis str. Vollum] gi|254760279|ref|ZP_05212303.1| cold shock protein CspA [Bacillus anthracis str. Australia 94] gi|301053941|ref|YP_003792152.1| cold shock protein [Bacillus anthracis CI] gi|49035526|sp|Q81QK2|CSPE_BACAN RecName: Full=Cold shock-like protein CspE gi|30257053|gb|AAP26285.1| cold shock protein CspA [Bacillus anthracis str. Ames] gi|42737439|gb|AAS41371.1| cold shock protein CspA [Bacillus cereus ATCC 10987] gi|47502863|gb|AAT31539.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor'] gi|47552693|gb|EAL11133.1| cold-shock domain family protein-related protein [Bacillus cereus G9241] gi|49179193|gb|AAT54569.1| cold shock protein CspA [Bacillus anthracis str. Sterne] gi|49329249|gb|AAT59895.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51976529|gb|AAU18079.1| cold shock protein [Bacillus cereus E33L] gi|118417045|gb|ABK85464.1| cold-shock DNA-binding protein family [Bacillus thuringiensis str. Al Hakam] gi|170669116|gb|EDT19860.1| cold shock protein CspA [Bacillus anthracis str. A0465] gi|172084744|gb|EDT69802.1| cold shock protein CspA [Bacillus anthracis str. A0174] gi|190563661|gb|EDV17626.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I] gi|195993490|gb|EDX57447.1| cold shock protein CspA [Bacillus cereus W] gi|196025865|gb|EDX64534.1| cold shock protein CspA [Bacillus cereus 03BB108] gi|196029143|gb|EDX67747.1| cold shock protein CspA [Bacillus cereus NVH0597-99] gi|206747764|gb|EDZ59153.1| cold shock protein CspA [Bacillus cereus H3081.97] gi|217064050|gb|ACJ78300.1| cold shock protein CspA [Bacillus cereus AH187] gi|218534973|gb|ACK87371.1| cold shock protein CspA [Bacillus cereus AH820] gi|221240064|gb|ACM12774.1| cold shock protein [Bacillus cereus Q1] gi|225787378|gb|ACO27595.1| cold shock protein CspA [Bacillus cereus 03BB102] gi|227007633|gb|ACP17376.1| cold shock protein CspA [Bacillus anthracis str. CDC 684] gi|228586988|gb|EEK45062.1| Cold shock protein cspB [Bacillus cereus m1293] gi|228598846|gb|EEK56465.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1] gi|228627605|gb|EEK84331.1| Cold shock protein cspB [Bacillus cereus ATCC 4342] gi|228644464|gb|EEL00719.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26] gi|228661493|gb|EEL17115.1| Cold shock protein cspB [Bacillus cereus 95/8201] gi|228691940|gb|EEL45683.1| Cold shock protein cspB [Bacillus cereus Rock3-42] gi|228731181|gb|EEL82101.1| Cold shock protein cspB [Bacillus cereus AH1271] gi|228774275|gb|EEM22684.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228813671|gb|EEM59952.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825973|gb|EEM71759.1| Cold shock protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832190|gb|EEM77772.1| Cold shock protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844631|gb|EEM89680.1| Cold shock protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266771|gb|ACQ48408.1| cold shock protein CspA [Bacillus anthracis str. A0248] gi|300376110|gb|ADK05014.1| cold shock protein [Bacillus cereus biovar anthracis str. CI] gi|324326434|gb|ADY21694.1| cold shock protein CspA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI EG G+DVF+H SA+ G +L EGQ V+++ D Sbjct: 1 MTLTGKVKWFNSEKGFGFIEVEG----GNDVFVHFSAITGDGFKSLDEGQEVSFEV--ED 54 Query: 61 ANGKYSAENL 70 N A+N+ Sbjct: 55 GNRGPQAKNV 64 >gi|253701491|ref|YP_003022680.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] gi|251776341|gb|ACT18922.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] Length = 66 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+ E+GDDVF H SA+ G +L EG VT+D V+ Sbjct: 4 GTVKWFNDSKGFGFL----EQENGDDVFCHFSAITGDGFKSLVEGDSVTFDVVK 53 >gi|110834144|ref|YP_693003.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2] gi|110647255|emb|CAL16731.1| cold-shock domain family protein [Alcanivorax borkumensis SK2] Length = 84 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 5/74 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KGYGF+ P+ E G+D+F+H S + G +L GQ V YD VQ AN Sbjct: 4 GRVKWFNNAKGYGFVRPD---EGGEDLFVHYSYIQMDGYKSLKAGQPVEYD-VQ-PANKG 58 Query: 65 YSAENLKLVPKSSN 78 Y A NL+ ++SN Sbjct: 59 YHAINLRTDEEASN 72 >gi|24347442|gb|AAN54703.1|AE015611_1 cold shock domain family protein [Shewanella oneidensis MR-1] Length = 81 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V+Y+ Q Sbjct: 18 GVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSDGFKTLAEGQKVSYEVEQ 68 >gi|269793596|ref|YP_003313051.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM 10542] gi|269095781|gb|ACZ20217.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM 10542] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI PE + DVF H SA+ S+G +L E Q V +D Q + Sbjct: 4 GTVKWFNAEKGFGFIAPE---DGSADVFAHYSAIQSSGYRSLDENQKVEFDITQGPKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENIR 65 >gi|90409640|ref|ZP_01217657.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|90410063|ref|ZP_01218080.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|90413803|ref|ZP_01221790.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|90325114|gb|EAS41617.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|90328993|gb|EAS45250.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|90329416|gb|EAS45673.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] Length = 69 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 6 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 56 >gi|54303583|ref|YP_133576.1| putative cold shock-like protein [Photobacterium profundum SS9] gi|54309095|ref|YP_130115.1| putative cold shock-like protein [Photobacterium profundum SS9] gi|46913527|emb|CAG20313.1| putative Cold shock-like protein [Photobacterium profundum SS9] gi|46917014|emb|CAG23776.1| putative Cold shock-like protein [Photobacterium profundum SS9] Length = 69 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 6 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 56 >gi|300855130|ref|YP_003780114.1| cold-shock protein [Clostridium ljungdahlii DSM 13528] gi|300435245|gb|ADK15012.1| cold-shock protein [Clostridium ljungdahlii DSM 13528] Length = 65 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFIT E G DVF H S + S G +L EGQ V+YD V+ Sbjct: 3 GTVKWFNGEKGFGFITGE----DGKDVFAHFSQINSNGYKSLDEGQKVSYDVVEGPKG-- 56 Query: 65 YSAENLKLV 73 AEN+ + Sbjct: 57 LQAENITTI 65 >gi|269956067|ref|YP_003325856.1| cold-shock DNA-binding domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269304748|gb|ACZ30298.1| cold-shock DNA-binding domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +GS+KW+N +KGYGFI +G G DVF+H SA+ S G +L E Q V ++ Q Sbjct: 3 QGSVKWFNAEKGYGFIAQDG---GGADVFVHYSAIQSNGYRSLEEAQRVEFEITQ 54 >gi|322419522|ref|YP_004198745.1| cold-shock DNA-binding domain-containing protein [Geobacter sp. M18] gi|320125909|gb|ADW13469.1| cold-shock DNA-binding domain protein [Geobacter sp. M18] Length = 66 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+ E+G+DVF+H SA+ S G +LTEG VT++ V+ Sbjct: 4 GTVKWFNDSKGFGFL----EQENGEDVFVHFSAINSDGFKSLTEGDSVTFEIVK 53 >gi|317491463|ref|ZP_07949899.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921010|gb|EFV42333.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 69 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + G DVF+H SA+AS G L EGQ V Y +Q+ G Sbjct: 6 GQVKWFNESKGFGFIEQH---DGGKDVFVHFSAIASEGFKTLAEGQRVEYT-IQDSPRGP 61 Query: 65 YSAENLKL 72 +A + L Sbjct: 62 AAANVVAL 69 >gi|282863804|ref|ZP_06272862.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|282561505|gb|EFB67049.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELQEGQKVNFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|253989236|ref|YP_003040592.1| cold shock protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780686|emb|CAQ83848.1| cold shock protein [Photorhabdus asymbiotica] Length = 69 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP + DVF+H SA+ S G L EGQ V ++ +Q+ G Sbjct: 6 GTVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSDGFKTLAEGQKVEFE-IQDGQKGP 61 Query: 65 YSA 67 +A Sbjct: 62 SAA 64 >gi|226939300|ref|YP_002794371.1| cspD2 [Laribacter hongkongensis HLHK9] gi|226714224|gb|ACO73362.1| cspD2 [Laribacter hongkongensis HLHK9] Length = 68 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + G+D+F H SA+ G L EGQ V +D Q Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSAINMNGFKTLKEGQRVNFDVNQ 54 >gi|149376382|ref|ZP_01894145.1| Cold shock protein [Marinobacter algicola DG893] gi|149359396|gb|EDM47857.1| Cold shock protein [Marinobacter algicola DG893] Length = 131 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 3/60 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ RG +KW+N KGYGFI EG + DD+F H S+V G L GQ VT+D +D Sbjct: 24 IMPRGKVKWFNNAKGYGFIIEEGCS---DDLFAHFSSVQMEGYKTLKAGQAVTFDKKPSD 80 >gi|306834445|ref|ZP_07467559.1| cold shock protein CspA [Streptococcus bovis ATCC 700338] gi|304423431|gb|EFM26583.1| cold shock protein CspA [Streptococcus bovis ATCC 700338] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N DKG+GFI S E+G DVF H S + S G +L +GQ V +D Q Sbjct: 3 QGTVKWFNTDKGFGFI----SQENGADVFAHFSEIKSNGFKSLEDGQKVQFDVEQ 53 >gi|302868803|ref|YP_003837440.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029] gi|315504727|ref|YP_004083614.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|302571662|gb|ADL47864.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC 27029] gi|315411346|gb|ADU09463.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF+H SA+ S+G L EGQ V ++ Q Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GPDVFVHYSAIQSSGYRELNEGQKVEFEVTQ 54 >gi|219125932|ref|XP_002183223.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405498|gb|EEC45441.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 91 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 6/66 (9%) Query: 3 HRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G +KW++ KG+GFI P +GST DVF+H++A+ + G +L +G+ V Y V+ D+ Sbjct: 6 QKGVVKWFDTMKGFGFIMPDDGST----DVFVHQTAIQTEGFRSLADGEAVEY-VVEEDS 60 Query: 62 NGKYSA 67 NG+ A Sbjct: 61 NGRKKA 66 >gi|82702420|ref|YP_411986.1| cold-shock DNA-binding domain-containing protein [Nitrosospira multiformis ATCC 25196] gi|82410485|gb|ABB74594.1| cold-shock DNA-binding protein family [Nitrosospira multiformis ATCC 25196] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP + +D+F H SA+ +G L EGQ VT++ Q Sbjct: 4 GTVKWFNEAKGFGFITP---VDGSEDLFAHFSAINMSGFKTLKEGQKVTFEITQ 54 >gi|24374322|ref|NP_718365.1| cold shock domain-contain protein [Shewanella oneidensis MR-1] gi|113970742|ref|YP_734535.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-4] gi|114047969|ref|YP_738519.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-7] gi|117921010|ref|YP_870202.1| cold-shock DNA-binding protein family protein [Shewanella sp. ANA-3] gi|24348871|gb|AAN55809.1|AE015718_1 cold shock domain family protein [Shewanella oneidensis MR-1] gi|113885426|gb|ABI39478.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4] gi|113889411|gb|ABI43462.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7] gi|117613342|gb|ABK48796.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3] Length = 69 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI ESG DVF+H A+ S G L EGQ V++ Q + Sbjct: 6 GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 62 --AENVTVI 68 >gi|254787663|ref|YP_003075092.1| cold shock DNA-binding domain-containing protein [Teredinibacter turnerae T7901] gi|237684629|gb|ACR11893.1| cold shock DNA-binding domain protein [Teredinibacter turnerae T7901] Length = 69 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S SG DVF H SA+ S+G LTEGQ V ++ D Sbjct: 7 GTVKWFNESKGFGFI----SQPSGPDVFAHFSAIESSGFKTLTEGQQV--EFTVTDGQKG 60 Query: 65 YSAENL 70 A+N+ Sbjct: 61 PQAQNI 66 >gi|238019427|ref|ZP_04599853.1| hypothetical protein VEIDISOL_01296 [Veillonella dispar ATCC 17748] gi|313893700|ref|ZP_07827267.1| cold shock protein CspB [Veillonella sp. oral taxon 158 str. F0412] gi|237864126|gb|EEP65416.1| hypothetical protein VEIDISOL_01296 [Veillonella dispar ATCC 17748] gi|313441714|gb|EFR60139.1| cold shock protein CspB [Veillonella sp. oral taxon 158 str. F0412] Length = 65 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW++ +KGYGFI E G DVF+H SA+ G +LTEGQ V +D V Sbjct: 3 GKVKWFSAEKGYGFI----EREDGSDVFVHYSAIQDEGFKSLTEGQNVEFDIV 51 >gi|126650394|ref|ZP_01722622.1| cold shock protein [Bacillus sp. B14905] gi|126593044|gb|EAZ87026.1| cold shock protein [Bacillus sp. B14905] Length = 66 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI EG G DVF H SA+ G +L EGQ V + +++ G Sbjct: 3 QGTVKWFNSEKGFGFIEVEG----GQDVFAHFSAIQGEGFKSLEEGQKVEFT-IEDGQRG 57 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 58 PQAANIVKL 66 >gi|86159596|ref|YP_466381.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776107|gb|ABC82944.1| cold-shock DNA-binding protein family [Anaeromyxobacter dehalogenans 2CP-C] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFIT +G G+DVF H +A+ + G ++ EGQ V +D + Sbjct: 4 GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQAEGFRSVAEGQKVEFDVAK 54 >gi|29830697|ref|NP_825331.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29607810|dbj|BAC71866.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELQEGQKVNFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|71725891|gb|AAZ39064.1| cold shock protein [Exiguobacterium sibiricum] gi|71725893|gb|AAZ39065.1| cold shock protein [Exiguobacterium undae] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N +KG+GFI ESGDDVF+H SA+ + G +L EGQ V+++ Sbjct: 4 GIVKWFNAEKGFGFI----ERESGDDVFVHFSAIQTDGFKSLDEGQEVSFE 50 >gi|89075956|ref|ZP_01162328.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|89048305|gb|EAR53884.1| putative Cold shock-like protein [Photobacterium sp. SKA34] Length = 70 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 7 GLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 57 >gi|90580456|ref|ZP_01236262.1| putative Cold shock-like protein [Vibrio angustum S14] gi|90438365|gb|EAS63550.1| putative Cold shock-like protein [Vibrio angustum S14] Length = 70 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFIT + G DVF+H A+ S G L +GQ V++D Q Sbjct: 7 GLVKWFNEDKGFGFITQD---NGGADVFVHFQAIVSEGFKTLMDGQKVSFDVEQ 57 >gi|311107315|ref|YP_003980168.1| cold shock-like protein CspG [Achromobacter xylosoxidans A8] gi|310762004|gb|ADP17453.1| cold shock-like protein CspG [Achromobacter xylosoxidans A8] Length = 94 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + G+D+F H S++ G L EGQ V ++ +Q Sbjct: 31 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQ 81 >gi|242373029|ref|ZP_04818603.1| cold-shock protein [Staphylococcus epidermidis M23864:W1] gi|242349183|gb|EES40784.1| cold-shock protein [Staphylococcus epidermidis M23864:W1] Length = 75 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N +KG+GFI E G DVF+H SA+ G +L EGQ V +D V+ + Sbjct: 13 GTVKWFNAEKGFGFI----EREDGGDVFVHFSAIVEDGYKSLEEGQSVEFDIVEGE 64 >gi|153216791|ref|ZP_01950615.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae 1587] gi|153800523|ref|ZP_01955109.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-3] gi|153828062|ref|ZP_01980729.1| putative cold-shock' DNA-binding domain [Vibrio cholerae 623-39] gi|229526634|ref|ZP_04416038.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426] gi|229528256|ref|ZP_04417647.1| cold shock transcriptional regulator CspA [Vibrio cholerae 12129(1)] gi|124114125|gb|EAY32945.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae 1587] gi|124123967|gb|EAY42710.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-3] gi|148876471|gb|EDL74606.1| putative cold-shock' DNA-binding domain [Vibrio cholerae 623-39] gi|229334618|gb|EEO00104.1| cold shock transcriptional regulator CspA [Vibrio cholerae 12129(1)] gi|229336792|gb|EEO01810.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426] Length = 70 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GF++ + GDDVF+H +++ S G L EGQ V+Y V+ G Sbjct: 7 GSVKWFNETKGFGFLSQD---NGGDDVFVHFNSIVSTGFKTLAEGQKVSY-LVEKGKKGL 62 Query: 65 YSAE 68 +AE Sbjct: 63 QAAE 66 >gi|163840196|ref|YP_001624601.1| cold shock protein [Renibacterium salmoninarum ATCC 33209] gi|162953672|gb|ABY23187.1| cold shock protein [Renibacterium salmoninarum ATCC 33209] Length = 100 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFITP+ ES +DVF+H S + + G L E Q V ++ Q Sbjct: 35 QGTVKWFNAEKGFGFITPD---ESPNDVFVHYSEIQTKGFRTLDENQRVEFEIGQ 86 >gi|134095623|ref|YP_001100698.1| RNA chaperone [Herminiimonas arsenicoxydans] gi|152983285|ref|YP_001354206.1| cold-shock DNA-binding domain-containing protein [Janthinobacterium sp. Marseille] gi|329905635|ref|ZP_08274166.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480] gi|133739526|emb|CAL62577.1| Cold shock-like protein CspD (CSP-D) [Herminiimonas arsenicoxydans] gi|151283362|gb|ABR91772.1| cold-shock DNA-binding domain protein [Janthinobacterium sp. Marseille] gi|327547557|gb|EGF32363.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + G+D+F H SA+ G L EGQ V ++ Q Sbjct: 4 GTVKWFNDSKGFGFITPD---DGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQ 54 >gi|157962306|ref|YP_001502340.1| cold-shock DNA-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|167623727|ref|YP_001674021.1| cold-shock DNA-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|170726405|ref|YP_001760431.1| cold-shock DNA-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|212635812|ref|YP_002312337.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3] gi|157847306|gb|ABV87805.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC 700345] gi|167353749|gb|ABZ76362.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis HAW-EB4] gi|169811752|gb|ACA86336.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC 51908] gi|212557296|gb|ACJ29750.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3] Length = 68 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI ESG DVF+H A+ S G L EGQ V + Q + Sbjct: 6 GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ +V Sbjct: 62 --AENVTVV 68 >gi|91200067|emb|CAJ73110.1| strongly similar to cold shock protein A [Candidatus Kuenenia stuttgartiensis] Length = 66 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI S ++G+DVF+H++A+ G L EG V ++ V+ D G Sbjct: 3 QGTVKWFNDSKGFGFI----SQDNGEDVFVHQTAIECEGFRTLAEGDKVEFEVVK-DQKG 57 Query: 64 KYSAENLKL 72 + + +KL Sbjct: 58 YKATKVVKL 66 >gi|90581342|ref|ZP_01237138.1| putative Cold shock-like protein [Vibrio angustum S14] gi|90437452|gb|EAS62647.1| putative Cold shock-like protein [Vibrio angustum S14] gi|119116583|dbj|BAF40852.1| cold-shock protein CspV [Photobacterium phosphoreum] Length = 70 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 7 GLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 57 >gi|27366937|ref|NP_762464.1| cold shock protein [Vibrio vulnificus CMCP6] gi|37676712|ref|NP_937108.1| cold shock protein [Vibrio vulnificus YJ016] gi|320158815|ref|YP_004191193.1| cold shock protein CspG [Vibrio vulnificus MO6-24/O] gi|27358504|gb|AAO07454.1|AE016809_216 Cold shock protein [Vibrio vulnificus CMCP6] gi|37201255|dbj|BAC97078.1| cold shock protein [Vibrio vulnificus YJ016] gi|319934127|gb|ADV88990.1| cold shock protein CspG [Vibrio vulnificus MO6-24/O] Length = 70 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N KG+GFI+ + G+DVF+H +++ S G L EGQ VT++ Q Sbjct: 7 GSVKWFNETKGFGFISQD---NGGNDVFVHFNSIVSTGFKTLAEGQRVTFEVEQ 57 >gi|297171013|gb|ADI22027.1| cold shock proteins [uncultured myxobacterium HF0200_05J13] Length = 69 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI P G G+DVF+H S + G L EGQ V Y+ + +D Sbjct: 4 GTVKWFNNKKGFGFILPAG---GGEDVFVHFSVIEGDGFKTLAEGQGVEYELMDSD 56 >gi|297613721|gb|ADI48290.1| cold-shock protein [Lactococcus piscium] Length = 54 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFIT G DVF+H SA+ + G L EGQ V YD Sbjct: 3 QGTVKWFNAEKGFGFITGA----DGKDVFVHFSAIQTDGFKTLEEGQAVNYD 50 >gi|37525773|ref|NP_929117.1| hypothetical protein plu1842 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785202|emb|CAE14135.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 70 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + ++N A G Sbjct: 6 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFT-IENGAKG 61 Query: 64 KYSAENLKL 72 +A + + Sbjct: 62 PAAANVMAI 70 >gi|299821691|ref|ZP_07053579.1| cold shock protein CspA [Listeria grayi DSM 20601] gi|299817356|gb|EFI84592.1| cold shock protein CspA [Listeria grayi DSM 20601] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G +KW+N +KGYGFI TE+G+D+F H +A+ G L EGQ V+++ V+ Sbjct: 1 MQNGKVKWFNNEKGYGFI----ETENGEDIFAHFTAIQGDGYKTLEEGQSVSFEVVE 53 >gi|30249291|ref|NP_841361.1| cold shock DNA-binding domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30180610|emb|CAD85223.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718] Length = 67 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ +E D+F H SA+ G L EGQ V++D Q Sbjct: 4 GTVKWFNDAKGFGFITPDDGSE---DLFAHFSAINMNGFKTLREGQKVSFDVTQ 54 >gi|326491571|dbj|BAJ94263.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 191 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 46/67 (68%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI+P+ +E D+F+H+S++ + G +L EG++V + + D +G Sbjct: 8 KGTVKWFNDTKGFGFISPDDGSE---DLFVHQSSIKADGFRSLAEGEVVEFSVSEGD-DG 63 Query: 64 KYSAENL 70 + A ++ Sbjct: 64 RTKAVDV 70 >gi|320105451|ref|YP_004181041.1| cold-shock DNA-binding domain-containing protein [Terriglobus saanensis SP1PR4] gi|319923972|gb|ADV81047.1| cold-shock DNA-binding domain protein [Terriglobus saanensis SP1PR4] Length = 66 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GF+ S +G+DVF+H +A+ S G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFL----SRANGEDVFVHHTAIQSNGFRSLQEGQNVQFNVVKGPK 56 Query: 62 NGKYSAENLKL 72 + AEN+++ Sbjct: 57 G--WQAENVQV 65 >gi|83944783|ref|ZP_00957149.1| putative cold shock-like transcription regulator protein [Oceanicaulis alexandrii HTCC2633] gi|83851565|gb|EAP89420.1| putative cold shock-like transcription regulator protein [Oceanicaulis alexandrii HTCC2633] Length = 70 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N +KG+GFITP+ E DVF+H +AV AGL +L +GQ + ++ + D GK Sbjct: 4 GTVKFFNTEKGFGFITPD---EGDKDVFVHITAVKDAGLNDLRDGQRIEFE-TEPDRRGK 59 Query: 65 -YSAENLK 71 A NLK Sbjct: 60 GPKAVNLK 67 >gi|319781907|ref|YP_004141383.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167795|gb|ADV11333.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 70 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N KG+GFITP+ + DVF+H SAV ++GL L +GQ V++D + D Sbjct: 1 MPQTGTVKFFNHAKGFGFITPD---DGAKDVFVHISAVQASGLPGLEDGQKVSFD-TEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KRGK 60 >gi|212639235|ref|YP_002315755.1| cold shock protein, CspA family [Anoxybacillus flavithermus WK1] gi|212560715|gb|ACJ33770.1| Cold shock protein, CspA family [Anoxybacillus flavithermus WK1] Length = 81 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 ++ G +KW+N +KG+GFI T+ G DVF+H +A+ G L EG+ VT+D V Sbjct: 16 MNTGKVKWFNAEKGFGFI----ETDGGTDVFVHFTAIQGTGFKTLEEGEKVTFDIV 67 >gi|21322752|dbj|BAB78536.2| cold shock protein-1 [Triticum aestivum] Length = 229 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI+PE +E D+F+H+SA+ S G +L E V ++ + D +G Sbjct: 6 KGTVKWFNVTKGFGFISPEDGSE---DLFVHQSAIKSDGYRSLNENDTVEFEVITGD-DG 61 Query: 64 KYSAENL 70 + A ++ Sbjct: 62 RTKASDV 68 >gi|134094972|ref|YP_001100047.1| RNA chaperone [Herminiimonas arsenicoxydans] gi|152983242|ref|YP_001353208.1| cold shock transcription regulator protein [Janthinobacterium sp. Marseille] gi|329903345|ref|ZP_08273438.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480] gi|133738875|emb|CAL61922.1| Cold shock-like protein cspE (CSP-E) [Herminiimonas arsenicoxydans] gi|151283319|gb|ABR91729.1| cold shock transcription regulator protein [Janthinobacterium sp. Marseille] gi|327548423|gb|EGF33101.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480] Length = 67 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFITP+ E G+D+F H SA+ S+G +L E Q V+++ Sbjct: 4 GIVKWFNDSKGFGFITPD---EGGEDLFAHFSAIQSSGFKSLQENQRVSFE 51 >gi|148555809|ref|YP_001263391.1| cold-shock DNA-binding protein family protein [Sphingomonas wittichii RW1] gi|148500999|gb|ABQ69253.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1] Length = 288 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K++N KG+GFI + + G+DVF+H SAV AGL L EGQ + + V D G Sbjct: 126 KGVVKFFNGQKGFGFIVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLEFTLV--DRGG 180 Query: 64 KYSAENLKL 72 + SA +LK+ Sbjct: 181 RVSATDLKI 189 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AG+ NL EG + ++ ++ D GK Sbjct: 223 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMTNLNEGDRLEFE-LEVDRRGK 278 Query: 65 YSAENL 70 Y+A NL Sbjct: 279 YAAVNL 284 >gi|51244214|ref|YP_064098.1| cold-shock protein (CspB) [Desulfotalea psychrophila LSv54] gi|50875251|emb|CAG35091.1| probable cold-shock protein (CspB) [Desulfotalea psychrophila LSv54] Length = 66 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI EG GDD+F+H +++ ++G L EG VT+D Q Sbjct: 3 EGTVKWFNDAKGFGFIEQEG----GDDLFVHHTSINASGFKTLEEGARVTFDIEQ 53 >gi|127512097|ref|YP_001093294.1| cold-shock DNA-binding domain-containing protein [Shewanella loihica PV-4] gi|126637392|gb|ABO23035.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4] Length = 69 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFI G DVF+H A+ S G L EGQ VT+D Q G+ Sbjct: 6 GTVKWFNEDKGFGFIE---QANGGADVFVHFRAIVSDGYKTLAEGQKVTFDIEQ----GQ 58 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 59 KGLQAANVVP 68 >gi|15598462|ref|NP_251956.1| cold acclimation protein B [Pseudomonas aeruginosa PAO1] gi|107102797|ref|ZP_01366715.1| hypothetical protein PaerPA_01003865 [Pseudomonas aeruginosa PACS2] gi|218890541|ref|YP_002439405.1| cold acclimation protein B [Pseudomonas aeruginosa LESB58] gi|254236229|ref|ZP_04929552.1| cold acclimation protein B [Pseudomonas aeruginosa C3719] gi|2493770|sp|P95459|CSPA_PSEAE RecName: Full=Major cold shock protein CspA gi|9949391|gb|AAG06654.1|AE004749_3 cold acclimation protein B [Pseudomonas aeruginosa PAO1] gi|1778825|gb|AAB40922.1| major cold shock protein CspA [Pseudomonas aeruginosa PAO1] gi|126168160|gb|EAZ53671.1| cold acclimation protein B [Pseudomonas aeruginosa C3719] gi|218770764|emb|CAW26529.1| cold acclimation protein B [Pseudomonas aeruginosa LESB58] Length = 69 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KG+GFITP ESG+D+F+H ++ G +L EGQ V++ V Sbjct: 5 QNGTVKWFNDAKGFGFITP----ESGNDLFVHFRSIQGTGFKSLQEGQKVSFVVV 55 >gi|329727663|gb|EGG64119.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 21172] Length = 66 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG ++VF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NNVFVHFSAINQDGYKSLEEGQAVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|326796216|ref|YP_004314036.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] gi|326546980|gb|ADZ92200.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] Length = 70 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI EG G DVF+H A+ G +L EGQ VT++ Q + Sbjct: 8 GIVKWFNDEKGFGFIEREG----GPDVFVHFRAINGTGRRSLQEGQKVTFEVTQGQKGPQ 63 Query: 65 YSAENLKLV 73 AEN+ +V Sbjct: 64 --AENVTVV 70 >gi|293606230|ref|ZP_06688593.1| cold shock transcription regulator protein [Achromobacter piechaudii ATCC 43553] gi|292815377|gb|EFF74495.1| cold shock transcription regulator protein [Achromobacter piechaudii ATCC 43553] gi|317407692|gb|EFV87625.1| cold-shock protein [Achromobacter xylosoxidans C54] Length = 81 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + G+D+F H S++ G L EGQ V ++ +Q Sbjct: 18 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQ 68 >gi|297580126|ref|ZP_06942053.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297535772|gb|EFH74606.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 70 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GF++ + GDDVF+H +++ S G L EGQ V+Y V+ G Sbjct: 7 GSVKWFNETKGFGFLSQD---NGGDDVFVHFNSIVSTGFKTLAEGQKVSY-LVEKGKKGL 62 Query: 65 YSAE 68 +AE Sbjct: 63 QAAE 66 >gi|163856975|ref|YP_001631273.1| cold-shock protein [Bordetella petrii DSM 12804] gi|163260703|emb|CAP43005.1| cold-shock protein [Bordetella petrii] Length = 81 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + G+D+F H S++ G L EGQ V ++ +Q Sbjct: 18 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQ 68 >gi|224000015|ref|XP_002289680.1| cold-shock DNA-binding domain-containing protein [Thalassiosira pseudonana CCMP1335] gi|220974888|gb|EED93217.1| cold-shock DNA-binding domain-containing protein [Thalassiosira pseudonana CCMP1335] Length = 136 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 47/68 (69%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW++ KG+GF+ P +GS E VF+H SA+ + G +L +G++V ++ +Q + N Sbjct: 43 KGTVKWFDAKKGFGFLVPDDGSAE----VFVHHSAIHANGFRSLGDGEVVEFEVMQ-EPN 97 Query: 63 GKYSAENL 70 GK+ A N+ Sbjct: 98 GKWKALNV 105 >gi|49082396|gb|AAT50598.1| PA3266 [synthetic construct] Length = 70 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KG+GFITP ESG+D+F+H ++ G +L EGQ V++ V Sbjct: 5 QNGTVKWFNDAKGFGFITP----ESGNDLFVHFRSIQGTGFKSLQEGQKVSFVVV 55 >gi|89073826|ref|ZP_01160333.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|90581460|ref|ZP_01237254.1| putative Cold shock-like protein [Vibrio angustum S14] gi|89050361|gb|EAR55862.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|90437321|gb|EAS62518.1| putative Cold shock-like protein [Vibrio angustum S14] Length = 67 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 4 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 54 >gi|114330329|ref|YP_746551.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas eutropha C91] gi|114307343|gb|ABI58586.1| cold shock protein E (CspE) [Nitrosomonas eutropha C91] Length = 67 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFITP+ +E D+F H SA++ G L EGQ V++D Q Sbjct: 4 GIVKWFNDAKGFGFITPDDGSE---DLFAHFSAISMNGFKTLREGQRVSFDVTQ 54 >gi|108803576|ref|YP_643513.1| cold-shock DNA-binding protein family protein [Rubrobacter xylanophilus DSM 9941] gi|108764819|gb|ABG03701.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus DSM 9941] Length = 69 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++ +KG+GFI TESG++V +H + + G L EG V Y V+ + +G Sbjct: 3 RGRVKWFSGEKGFGFI----ETESGEEVLVHYTEIKGEGFRALEEGAEVEYAAVKTE-DG 57 Query: 64 KYSAENLKLVPK 75 + A ++++P+ Sbjct: 58 RRRAFGVRMLPR 69 >gi|116051280|ref|YP_789888.1| cold acclimation protein B [Pseudomonas aeruginosa UCBPP-PA14] gi|152985784|ref|YP_001347238.1| cold acclimation protein B [Pseudomonas aeruginosa PA7] gi|254241955|ref|ZP_04935277.1| cold acclimation protein B [Pseudomonas aeruginosa 2192] gi|296388237|ref|ZP_06877712.1| cold acclimation protein B [Pseudomonas aeruginosa PAb1] gi|313108607|ref|ZP_07794608.1| cold acclimation protein B [Pseudomonas aeruginosa 39016] gi|115586501|gb|ABJ12516.1| cold acclimation protein B [Pseudomonas aeruginosa UCBPP-PA14] gi|126195333|gb|EAZ59396.1| cold acclimation protein B [Pseudomonas aeruginosa 2192] gi|150960942|gb|ABR82967.1| cold acclimation protein B [Pseudomonas aeruginosa PA7] gi|310881110|gb|EFQ39704.1| cold acclimation protein B [Pseudomonas aeruginosa 39016] Length = 69 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KG+GFITP ESG+D+F+H ++ G +L EGQ V++ V Sbjct: 5 QNGTVKWFNDAKGFGFITP----ESGNDLFVHFRSIQGTGFKSLQEGQKVSFVVV 55 >gi|254391125|ref|ZP_05006332.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|294814384|ref|ZP_06773027.1| Cold shock-like protein [Streptomyces clavuligerus ATCC 27064] gi|326442775|ref|ZP_08217509.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|197704819|gb|EDY50631.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|294326983|gb|EFG08626.1| Cold shock-like protein [Streptomyces clavuligerus ATCC 27064] Length = 67 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E Q+V +D Q Sbjct: 4 GTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINATGFRSLEENQVVNFDVTQ 54 >gi|71725895|gb|AAZ39066.1| cold shock protein [Exiguobacterium sibiricum 255-15] Length = 67 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N +KG+GFI E+GDDVF+H SA+ + G +L EGQ V+++ Sbjct: 4 GKVKWFNSEKGFGFI----ERENGDDVFVHFSAIQTDGFKSLDEGQEVSFE 50 >gi|186477475|ref|YP_001858945.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184193934|gb|ACC71899.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 67 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H S + G L E Q VTYD V+ Sbjct: 1 METGTVKWFNDAKGFGFITPDA---GGEDLFAHFSEIRVEGFKTLQENQKVTYD-VKTGP 56 Query: 62 NGKYSAENLK 71 GK +A N+K Sbjct: 57 KGKQAA-NIK 65 >gi|114332012|ref|YP_748234.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas eutropha C91] gi|114309026|gb|ABI60269.1| cold-shock DNA-binding protein family [Nitrosomonas eutropha C91] Length = 67 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ +E D+F H SA+ +G L EGQ V+++ Q Sbjct: 4 GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMSGFKTLKEGQKVSFEVTQ 54 >gi|110598159|ref|ZP_01386437.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] gi|110340291|gb|EAT58788.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] Length = 69 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V + Q A G Sbjct: 6 EGTVKWFNEEKGYGFIEQKG----GKDVFVHHSAINGTGRKTLVEGQKVLMEVTQG-AKG 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -LQAENV 66 >gi|109900034|ref|YP_663289.1| cold-shock DNA-binding domain-containing protein [Pseudoalteromonas atlantica T6c] gi|109702315|gb|ABG42235.1| cold-shock DNA-binding protein family [Pseudoalteromonas atlantica T6c] Length = 68 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59 +G++KW+N DKG+GFITPE + G D+F+H S + S G + L +GQ V ++ Q+ Sbjct: 3 QGTVKWFNADKGFGFITPE---DGGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQS 56 >gi|294498189|ref|YP_003561889.1| cold shock protein [Bacillus megaterium QM B1551] gi|295703539|ref|YP_003596614.1| cold shock protein [Bacillus megaterium DSM 319] gi|294348126|gb|ADE68455.1| cold shock protein [Bacillus megaterium QM B1551] gi|294801198|gb|ADF38264.1| cold shock protein [Bacillus megaterium DSM 319] Length = 67 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M G++KW+N +KG+GFI G +DVF+H SA+ S G L EGQ V ++ V+ Sbjct: 1 MATTGTVKWFNSEKGFGFIEVPGE----NDVFVHFSAIQSEGFKTLEEGQKVEFEIVE 54 >gi|159576908|dbj|BAF92769.1| hypothetical protein [Photobacterium phosphoreum] Length = 70 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 7 GLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 57 >gi|90408760|ref|ZP_01216906.1| Cold shock protein [Psychromonas sp. CNPT3] gi|90310140|gb|EAS38279.1| Cold shock protein [Psychromonas sp. CNPT3] Length = 68 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E+G DVF H SA+AS G L EGQ V + Q Sbjct: 6 GTVKWFNESKGFGFI----EQENGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQ 55 >gi|269103742|ref|ZP_06156439.1| cold shock protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163640|gb|EEZ42136.1| cold shock protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 69 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFI+ + G DVF+H A+AS G L EGQ V++D Q Sbjct: 6 GIVKWFNEEKGFGFISQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQ 56 >gi|268315694|ref|YP_003289413.1| cold-shock DNA-binding domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333228|gb|ACY47025.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM 4252] Length = 76 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 6/78 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQN 59 M RG +KW+N DKGYGFI P + DVF+HR+ V G L EG+ V+Y+ V+ Sbjct: 1 MAQRGRVKWFNIDKGYGFIEP---NDGSKDVFVHRNNVPGLGWDEGLREGEEVSYE-VER 56 Query: 60 DANGKYSAENLKLVPKSS 77 G SA N++ + +SS Sbjct: 57 TPKG-LSAMNVERLSRSS 73 >gi|254245244|ref|ZP_04938566.1| hypothetical protein PA2G_06136 [Pseudomonas aeruginosa 2192] gi|126198622|gb|EAZ62685.1| hypothetical protein PA2G_06136 [Pseudomonas aeruginosa 2192] Length = 203 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 139 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 190 >gi|50084936|ref|YP_046446.1| cold shock-like protein [Acinetobacter sp. ADP1] gi|49530912|emb|CAG68624.1| cold shock-like protein [Acinetobacter sp. ADP1] Length = 70 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 10/73 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI S++SG+DVF H S ++++G L EGQ V + V NG Sbjct: 6 QGTVKWFNETKGFGFI----SSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVV----NG 57 Query: 64 K--YSAENLKLVP 74 K A N+ +V Sbjct: 58 KKGLQASNISIVK 70 >gi|331006239|ref|ZP_08329559.1| Cold shock protein CspE [gamma proteobacterium IMCC1989] gi|330419928|gb|EGG94274.1| Cold shock protein CspE [gamma proteobacterium IMCC1989] Length = 69 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI ESG DVF H SA+ S G L EGQ V +V D Sbjct: 7 GTVKWFNESKGFGFI----EQESGPDVFAHFSAIVSDGFKTLMEGQKV--QFVVTDGQKG 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 PQAENI 66 >gi|308049339|ref|YP_003912905.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM 9799] gi|307631529|gb|ADN75831.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM 9799] Length = 69 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N DKG+GFIT + G DVF+H A+ G L EGQ V++D Q Sbjct: 6 GTVKWFNEDKGFGFITQD---NGGADVFVHFRAIQGDGFKTLAEGQQVSFDIEQ 56 >gi|89074300|ref|ZP_01160790.1| Putative cold shock-like protein cspG [Photobacterium sp. SKA34] gi|90578631|ref|ZP_01234441.1| Putative cold shock-like protein cspG [Vibrio angustum S14] gi|89050004|gb|EAR55538.1| Putative cold shock-like protein cspG [Photobacterium sp. SKA34] gi|90439464|gb|EAS64645.1| Putative cold shock-like protein cspG [Vibrio angustum S14] Length = 69 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFIT + G DVF+H A+ G LTEGQ V+Y+ Q Sbjct: 6 GTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLTEGQKVSYETEQ 56 >gi|260904248|ref|ZP_05912570.1| cold-shock DNA-binding domain protein [Brevibacterium linens BL2] Length = 67 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KGYGFIT EG+ + DVF+H SA+ G L EGQ V ++ Sbjct: 3 QGTVKWFNAEKGYGFITLEGNNQ---DVFVHWSAIQMDGYRALEEGQQVEFE 51 >gi|294653627|gb|ADF28646.1| cold shock protein [Bacillus subtilis] Length = 68 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +KW+N +KG+GFI EG G DVF+H SA+ G L EGQ V+++ V+ + Sbjct: 8 VKWFNSEKGFGFIEVEG----GSDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN 57 >gi|302532074|ref|ZP_07284416.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302440969|gb|EFL12785.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 67 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDGG---GPDVFAHYSNIAAQGFRELNEGQKVNFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|209809774|ref|YP_002265313.1| cold shock-like protein CspG [Aliivibrio salmonicida LFI1238] gi|208011337|emb|CAQ81788.1| cold shock-like protein CspG [Aliivibrio salmonicida LFI1238] Length = 69 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 6 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 56 >gi|116248183|sp|Q61CX7|LIN28_CAEBR RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage protein 28 gi|309371318|emb|CAP31656.3| CBR-LIN-28 protein [Caenorhabditis briggsae AF16] Length = 237 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 55 GSCKWFNVSKGYGFVIDDN---TGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110 >gi|15226451|ref|NP_179702.1| ATGRP2B (GLYCINE-RICH PROTEIN 2B); DNA binding / nucleic acid binding / zinc ion binding [Arabidopsis thaliana] gi|17366505|sp|Q38896|GRP2B_ARATH RecName: Full=Glycine-rich protein 2b; Short=AtGRP2b gi|1063684|gb|AAA91165.1| AtGRP2b [Arabidopsis thaliana] gi|4803937|gb|AAD29810.1| glycine-rich protein (AtGRP2) [Arabidopsis thaliana] gi|16323178|gb|AAL15323.1| At2g21060/F26H11.18 [Arabidopsis thaliana] gi|60543359|gb|AAX22277.1| At2g21060 [Arabidopsis thaliana] gi|330252023|gb|AEC07117.1| glycine-rich protein 2B [Arabidopsis thaliana] Length = 201 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 4/65 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW++ KG+GFITP ++ GDD+F+H+S++ S G +L + V +D V+ D + Sbjct: 15 RKGTVKWFDTQKGFGFITP---SDGGDDLFVHQSSIRSEGFRSLAAEESVEFD-VEVDNS 70 Query: 63 GKYSA 67 G+ A Sbjct: 71 GRPKA 75 >gi|116750635|ref|YP_847322.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116699699|gb|ABK18887.1| cold-shock DNA-binding protein family [Syntrophobacter fumaroxidans MPOB] Length = 67 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KGYGFI +T+ GD VF+H SA+A+ G +L+EG+ VT+D Sbjct: 4 GRVKWFNDKKGYGFIE---TTDQGD-VFVHYSAIAAEGFRSLSEGERVTFD 50 >gi|149187264|ref|ZP_01865562.1| cold shock protein [Vibrio shilonii AK1] gi|148838800|gb|EDL55739.1| cold shock protein [Vibrio shilonii AK1] Length = 69 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 8/71 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI + E+G DVF+H A++ G L EGQ V++ Q G+ Sbjct: 7 GTVKWFNEEKGYGFI----AQENGPDVFVHFRAISGEGFKTLKEGQAVSFGVEQ----GQ 58 Query: 65 YSAENLKLVPK 75 + + ++P+ Sbjct: 59 KGPQAVNVIPQ 69 >gi|20803992|emb|CAD31569.1| PUTATIVE TRANSCRIPTION REGULATOR COLD SHOCK PROTEIN [Mesorhizobium loti R7A] Length = 200 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 3/47 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 ++KWYNP+KG+GFI PE + D+F+H +A+ +GL L EGQ V Sbjct: 138 TVKWYNPEKGFGFIAPENGEK---DIFVHATALTRSGLSMLMEGQKV 181 >gi|310780205|ref|YP_003968537.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] gi|309749528|gb|ADO84189.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] Length = 66 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFIT +E G DVF+H S + G L EG+ VT++ Q Sbjct: 4 GTVKWFNQEKGFGFIT----SEDGTDVFVHFSQINKPGFKTLEEGEQVTFEITQ 53 >gi|254465282|ref|ZP_05078693.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] gi|206686190|gb|EDZ46672.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] Length = 68 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI P+ E G DVF+H SAV +G+ L + + Y+ + K Sbjct: 4 GTVKWFNTTKGYGFIEPD---EGGKDVFVHISAVERSGMTGLADNMKIGYELSEGRDGRK 60 Query: 65 YSAE 68 +AE Sbjct: 61 MAAE 64 >gi|42391858|dbj|BAD08701.1| cold shock domain protein 3 [Triticum aestivum] Length = 231 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 45/67 (67%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI+P+ + G+D+F+H+SA+ S G +L E V ++ + D +G Sbjct: 6 KGTVKWFNVTKGFGFISPD---DGGEDLFVHQSAIKSDGYRSLNENDAVEFEIITGD-DG 61 Query: 64 KYSAENL 70 + A ++ Sbjct: 62 RTKASDV 68 >gi|21224260|ref|NP_630039.1| cold-shock domain-containing protein [Streptomyces coelicolor A3(2)] gi|256784655|ref|ZP_05523086.1| cold-shock domain-containing protein [Streptomyces lividans TK24] gi|289768539|ref|ZP_06527917.1| cold-shock domain-containing protein [Streptomyces lividans TK24] gi|2815334|emb|CAA16458.1| cold-shock domain protein [Streptomyces coelicolor A3(2)] gi|91199666|emb|CAI78021.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|96771713|emb|CAI78295.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|117164258|emb|CAJ87800.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|126347370|emb|CAJ89078.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|289698738|gb|EFD66167.1| cold-shock domain-containing protein [Streptomyces lividans TK24] Length = 67 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|261346879|ref|ZP_05974523.1| conserved domain protein [Providencia rustigianii DSM 4541] gi|282565065|gb|EFB70600.1| conserved domain protein [Providencia rustigianii DSM 4541] Length = 70 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI+P T+ DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFNSDKGFGFISP---TDGSKDVFVHFSAIQSDNFRTLDEGQKVEF-TIENGAKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|54025407|ref|YP_119649.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54016915|dbj|BAD58285.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 67 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +GS+KW+N +KG+GFI +G G DVF+H SA+ +G L EGQ V ++ Q Sbjct: 3 QGSVKWFNGEKGFGFIAQDG---GGPDVFVHYSAIGGSGFKTLDEGQRVEFEIGQG 55 >gi|311694945|gb|ADP97818.1| cold shock, CspA [marine bacterium HP15] Length = 69 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI +G G DVF+H SA+ ++G LTEGQ V + Q + Sbjct: 7 GHVKWFNESKGFGFIAQDG----GSDVFVHYSAINASGFRTLTEGQQVQFTVTQGPKGPQ 62 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 63 --AENVTPV 69 >gi|227872733|ref|ZP_03991058.1| cold shock protein CspA [Oribacterium sinus F0268] gi|227841428|gb|EEJ51733.1| cold shock protein CspA [Oribacterium sinus F0268] Length = 65 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI S E+G DVF+H S ++ G +L EGQ V ++ V + A G Sbjct: 2 KGTVKWFNNQKGYGFI----SDETGKDVFVHYSGLSGDGFKSLEEGQAVEFEVV-DGAKG 56 Query: 64 KYSAENLKL 72 + +KL Sbjct: 57 PQATNVVKL 65 >gi|115376123|ref|ZP_01463367.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|310824812|ref|YP_003957170.1| Cold shock family protein, CspA [Stigmatella aurantiaca DW4/3-1] gi|115366846|gb|EAU65837.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|309397884|gb|ADO75343.1| Cold shock family protein, CspA [Stigmatella aurantiaca DW4/3-1] Length = 67 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+T +G G+DVF H SA+ G L EGQ V++D + Sbjct: 4 GTVKWFNDAKGFGFLTQDG---GGEDVFCHHSAINMDGFRTLAEGQKVSFDVTR 54 >gi|74316873|ref|YP_314613.1| cold-shock DNA-binding protein family protein [Thiobacillus denitrificans ATCC 25259] gi|74056368|gb|AAZ96808.1| Possible Cold-shock DNA-binding domain protein [Thiobacillus denitrificans ATCC 25259] Length = 68 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW++ KG+GFITP+ + G+DVF H SA+ + G L EGQ V+++ Q Sbjct: 4 GTVKWFSDAKGFGFITPD---DGGEDVFAHFSAIQTNGFKTLKEGQKVSFEVSQ 54 >gi|268568282|ref|XP_002640209.1| C. briggsae CBR-LIN-28 protein [Caenorhabditis briggsae] Length = 219 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 55 GSCKWFNVSKGYGFVIDDN---TGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110 >gi|312200500|ref|YP_004020561.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] gi|311231836|gb|ADP84691.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] Length = 68 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 7/72 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF+H SA+ + G +L EGQ V +D Q G+ Sbjct: 4 GTVKWFNSEKGFGFIAVDG---GGPDVFVHYSAIQTDGFRSLDEGQRVEFDIEQ----GQ 56 Query: 65 YSAENLKLVPKS 76 + K+ P S Sbjct: 57 KGPQAGKVRPTS 68 >gi|257063443|ref|YP_003143115.1| cold-shock DNA-binding protein family [Slackia heliotrinireducens DSM 20476] gi|256791096|gb|ACV21766.1| cold-shock DNA-binding protein family [Slackia heliotrinireducens DSM 20476] Length = 67 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 7/72 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW++P+KGYGFI S G+++F+H S + G L EG VT++ V ANG Sbjct: 3 EGTVKWFSPEKGYGFI----SQADGENLFVHFSEIQMDGYKTLEEGAKVTFE-VTEGANG 57 Query: 64 KYSAENLKLVPK 75 K A N +VP+ Sbjct: 58 KKQASN--VVPQ 67 >gi|300690669|ref|YP_003751664.1| cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum PSI07] gi|299077729|emb|CBJ50367.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum PSI07] Length = 67 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V ++ Q Sbjct: 4 GTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMGGFKTLKEGQRVVFEVTQ 54 >gi|296390681|ref|ZP_06880156.1| cold-shock protein [Pseudomonas aeruginosa PAb1] Length = 204 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 140 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 191 >gi|323342986|ref|ZP_08083217.1| cold shock protein CspA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463050|gb|EFY08245.1| cold shock protein CspA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 66 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +K++N +KGYGFIT EG G D+F+H SA+ + G L EGQ V+++ V+ Sbjct: 4 GKVKFFNAEKGYGFITIEG----GQDIFVHYSAIVADGYKTLEEGQEVSFEVVE 53 >gi|226313978|ref|YP_002773874.1| cold shock protein [Brevibacillus brevis NBRC 100599] gi|226096928|dbj|BAH45370.1| cold shock protein [Brevibacillus brevis NBRC 100599] Length = 68 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +G +KW++ +KGYGFI +G G DVF+H SA+ AG NL EG+ V ++ V Sbjct: 3 QGKVKWFSKEKGYGFIERDG----GPDVFVHYSAITGAGYRNLEEGEQVVFEIV 52 >gi|59714277|ref|YP_207052.1| DNA-binding transcriptional regulator [Vibrio fischeri ES114] gi|197337532|ref|YP_002158749.1| hypothetical protein VFMJ11_A1204 [Vibrio fischeri MJ11] gi|59482525|gb|AAW88164.1| DNA-binding transcriptional regulator [Vibrio fischeri ES114] gi|197314784|gb|ACH64233.1| conserved domain protein [Vibrio fischeri MJ11] Length = 69 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 6 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 56 >gi|30249693|ref|NP_841763.1| cold shock DNA-binding domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30180730|emb|CAD85642.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718] Length = 67 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ +E D+F H SA+ G L EGQ V+++ Q Sbjct: 4 GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMTGFKTLKEGQKVSFEVTQ 54 >gi|302786020|ref|XP_002974781.1| hypothetical protein SELMODRAFT_58801 [Selaginella moellendorffii] gi|300157676|gb|EFJ24301.1| hypothetical protein SELMODRAFT_58801 [Selaginella moellendorffii] Length = 145 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 44/66 (66%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P +G+GFITP+ + D+F+H++++ + G +L EG++V Y V+ +G+ Sbjct: 1 GKVKWFSPTRGFGFITPD---DGSPDIFVHQTSIHAEGFRSLREGEIVEY-VVELGQDGR 56 Query: 65 YSAENL 70 A N+ Sbjct: 57 MRAGNV 62 >gi|258516119|ref|YP_003192341.1| cold-shock DNA-binding domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257779824|gb|ACV63718.1| cold-shock DNA-binding domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 65 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N +KG+GFI EG G D+F+H SA+ G L EGQ V ++ V+ + Sbjct: 2 EGTVKWFNAEKGFGFIEQEG----GGDIFVHFSAIQGDGFKTLDEGQKVKFEVVEGN 54 >gi|119946712|ref|YP_944392.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119865316|gb|ABM04793.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFI SG DVF+H SA+AS G L EGQ V + Q Sbjct: 5 EQGTVKWFNEAKGFGFI----EQASGPDVFVHFSAIASEGFKTLAEGQKVEFSVSQ 56 >gi|253688097|ref|YP_003017287.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754675|gb|ACT12751.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 73 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQ 54 >gi|149378085|ref|ZP_01895807.1| cold shock protein [Marinobacter algicola DG893] gi|149357654|gb|EDM46154.1| cold shock protein [Marinobacter algicola DG893] Length = 66 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI +G G DVF+H SA+ ++G LTEGQ V + Q + Sbjct: 4 GHVKWFNESKGFGFIAQDG----GSDVFVHYSAINASGFRTLTEGQQVQFTVTQGPKGPQ 59 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 60 --AENVTPV 66 >gi|153003150|ref|YP_001377475.1| cold-shock DNA-binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026723|gb|ABS24491.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 67 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFIT + G+DVF H SA+ G +L EGQ V +D V+ Sbjct: 4 GTVKWFNDAKGFGFITQD---NGGEDVFCHYSAIQGDGFKSLAEGQKVEFDVVK 54 >gi|40363759|dbj|BAD06324.1| putative glycine-rich protein [Triticum aestivum] gi|42391853|dbj|BAD08700.1| cold shock domain protein 2 [Triticum aestivum] Length = 205 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 45/67 (67%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI+PE +E D+F+H+SA+ + G +L E +V ++ + D +G Sbjct: 6 KGTVKWFNVTKGFGFISPEDGSE---DLFVHQSAIKADGYRSLNENDVVEFEVITGD-DG 61 Query: 64 KYSAENL 70 + A ++ Sbjct: 62 RTKATDV 68 >gi|332993404|gb|AEF03459.1| stress response protein CspD [Alteromonas sp. SN2] Length = 72 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI PE + G+D+F H S + G +L GQ VTYD VQ G Sbjct: 4 GKVKWFNNAKGFGFIVPE---DGGEDIFAHYSTIQMEGYRSLKAGQEVTYD-VQQGPKGL 59 Query: 65 YSAENL 70 + AEN+ Sbjct: 60 H-AENI 64 >gi|312200428|ref|YP_004020489.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] gi|311231764|gb|ADP84619.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] Length = 67 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI+ +G G DVF+H SA+ + G +L EGQ V ++ VQ Sbjct: 3 QGTVKWFNAEKGFGFISVDG---GGPDVFVHFSAILTDGYKSLDEGQSVQFEIVQ 54 >gi|262373766|ref|ZP_06067044.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] gi|262311519|gb|EEY92605.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] Length = 71 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFI ESG DVF H S ++++G L EGQ+V + Q Sbjct: 8 KGTVKWFNETKGFGFI----QQESGPDVFAHFSEISNSGFKTLFEGQMVEFSIAQ 58 >gi|183598367|ref|ZP_02959860.1| hypothetical protein PROSTU_01759 [Providencia stuartii ATCC 25827] gi|188020543|gb|EDU58583.1| hypothetical protein PROSTU_01759 [Providencia stuartii ATCC 25827] Length = 71 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +H G +KW++ +KGYGFI+P GDD+F+ R ++A+ + +L EGQ V + +N Sbjct: 5 LHMGRVKWFDANKGYGFISP---INGGDDIFVTRKSIANKKIKSLFEGQNVEFSVTRN 59 >gi|328951178|ref|YP_004368513.1| cold-shock DNA-binding domain protein [Marinithermus hydrothermalis DSM 14884] gi|328451502|gb|AEB12403.1| cold-shock DNA-binding domain protein [Marinithermus hydrothermalis DSM 14884] Length = 73 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N KGYGFI EG + DVF+H +A+ G L EG +VT++ Sbjct: 1 MQRGRVKWFNATKGYGFIEREGDS----DVFVHYTAINGTGFRTLNEGDIVTFEVEPGRP 56 Query: 62 NGKYSAENLKLV 73 A N+ +V Sbjct: 57 GKGPQATNVTVV 68 >gi|300312332|ref|YP_003776424.1| cold shock-like transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075117|gb|ADJ64516.1| cold shock-like transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 68 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ E G+D+F H SA+ S G +L E Q V+++ Sbjct: 4 GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQSNGFKSLKENQRVSFE 51 >gi|197285535|ref|YP_002151407.1| cold shock-like protein [Proteus mirabilis HI4320] gi|227356030|ref|ZP_03840421.1| cold shock family protein [Proteus mirabilis ATCC 29906] gi|194683022|emb|CAR43496.1| cold shock-like protein [Proteus mirabilis HI4320] gi|227163807|gb|EEI48715.1| cold shock family protein [Proteus mirabilis ATCC 29906] Length = 70 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + ++N A G Sbjct: 6 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFT-IENGAKG 61 Query: 64 KYSA 67 +A Sbjct: 62 PAAA 65 >gi|20302392|emb|CAC80094.1| cold shock protein [Staphylococcus aureus] Length = 66 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DV +H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVLVHFSAINQDGYKSLEEGQAVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|70728544|ref|YP_258293.1| cold-shock domain-contain protein [Pseudomonas fluorescens Pf-5] gi|68342843|gb|AAY90449.1| cold-shock domain family protein [Pseudomonas fluorescens Pf-5] Length = 82 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI EG G DVF+H A+ G +LTEGQ V Y V+ Sbjct: 20 GNVKWFNDAKGYGFIQREG----GADVFVHYRAIRGEGHRSLTEGQQVEYAVVE 69 >gi|107100418|ref|ZP_01364336.1| hypothetical protein PaerPA_01001443 [Pseudomonas aeruginosa PACS2] Length = 204 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 140 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 191 >gi|254448335|ref|ZP_05061796.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium HTCC5015] gi|198261948|gb|EDY86232.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium HTCC5015] Length = 69 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N DKG+GFI EG G DVF+H SA+ G +L EGQ V+++ Sbjct: 7 GTVKWFNDDKGFGFIQQEG----GPDVFVHFSAINGTGRRSLAEGQAVSFE 53 >gi|188576172|ref|YP_001913101.1| major cold shock protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520624|gb|ACD58569.1| major cold shock protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 61 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 4/52 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 1 MKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQ 48 >gi|37725747|gb|AAO32342.1| cold shock protein 2 [Streptomyces sp. AA8321] Length = 65 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW N +KG+GFI +G G DVF+H SA+ ++G +L E Q VT+D Q Sbjct: 4 GTVKWLNAEKGFGFIAQDGG---GPDVFVHYSAINASGFRSLEENQQVTFDVTQ 54 >gi|89093057|ref|ZP_01166008.1| Cold shock protein [Oceanospirillum sp. MED92] gi|89082707|gb|EAR61928.1| Cold shock protein [Oceanospirillum sp. MED92] Length = 69 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 6/67 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +SG DVF H SA+A G +L EGQ V + Q + Sbjct: 7 GTVKWFNDEKGFGFI----EQQSGPDVFAHFSAIAGDGFKSLQEGQQVEFTVAQGQKGPQ 62 Query: 65 YSAENLK 71 AEN++ Sbjct: 63 --AENIR 67 >gi|312883132|ref|ZP_07742863.1| cold shock protein CspE [Vibrio caribbenthicus ATCC BAA-2122] gi|309369292|gb|EFP96813.1| cold shock protein CspE [Vibrio caribbenthicus ATCC BAA-2122] Length = 69 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V ++V + Sbjct: 7 GTVKWFNETKGFGFI----QQENGPDVFAHFSAITGDGFRTLVEGQKV--EFVVSQGQKG 60 Query: 65 YSAENLKLV 73 AEN+K+V Sbjct: 61 PQAENIKVV 69 >gi|290475740|ref|YP_003468629.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus bovienii SS-2004] gi|289175062|emb|CBJ81865.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus bovienii SS-2004] Length = 69 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP + DVF+H SA+ + G L+EGQ V ++ +QN G Sbjct: 6 GIVKWFNESKGFGFITP---ADGSKDVFVHFSAIMNDGFKTLSEGQQVEFE-IQNGPKGP 61 Query: 65 YSA 67 +A Sbjct: 62 AAA 64 >gi|237727875|ref|ZP_04558356.1| major cold shock protein CSPA2 [Citrobacter sp. 30_2] gi|226910432|gb|EEH96350.1| major cold shock protein CSPA2 [Citrobacter sp. 30_2] Length = 70 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ ++ DVF+H SA+ S L EGQ V + V+N A G Sbjct: 7 GLVKWFNSDKGFGFITPQDGSK---DVFVHFSAIQSNDFKTLDEGQKVEFS-VENGAKG 61 >gi|54303445|ref|YP_133438.1| putative cold shock protein [Photobacterium profundum SS9] gi|46916875|emb|CAG23638.1| putative cold shock protein [Photobacterium profundum SS9] Length = 104 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 41 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 91 >gi|116048886|ref|YP_792313.1| cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14] gi|313105848|ref|ZP_07792111.1| putative cold-shock protein [Pseudomonas aeruginosa 39016] gi|115584107|gb|ABJ10122.1| probable cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14] gi|310878613|gb|EFQ37207.1| putative cold-shock protein [Pseudomonas aeruginosa 39016] Length = 204 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 140 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 191 >gi|224369509|ref|YP_002603673.1| CspA [Desulfobacterium autotrophicum HRM2] gi|223692226|gb|ACN15509.1| CspA [Desulfobacterium autotrophicum HRM2] Length = 66 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E+G+DVF+H S + ++G +L EG VT+D Q Sbjct: 4 GTVKWFNDSKGFGFI----EQENGEDVFVHHSGINASGFKSLNEGDKVTFDIEQ 53 >gi|297196882|ref|ZP_06914279.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|197711514|gb|EDY55548.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] Length = 67 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF H S +A+ G LTEG+ VT+D Q Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSEIAANGYRELTEGEHVTFDIGQ 54 >gi|117619984|ref|YP_857934.1| hypothetical protein AHA_3450 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561391|gb|ABK38339.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 69 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI G DVF+H S++ SAG L EGQ V + Q Sbjct: 4 IRTGQVKWFNETKGFGFI----EQSQGPDVFVHFSSIQSAGFKTLAEGQKVQFTVTQGKK 59 Query: 62 NGKYSAENLKLV 73 + AEN+ L+ Sbjct: 60 GPQ--AENVTLL 69 >gi|290474928|ref|YP_003467812.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus bovienii SS-2004] gi|300722620|ref|YP_003711910.1| cold shock protein, transcription antiterminator [Xenorhabdus nematophila ATCC 19061] gi|289174245|emb|CBJ81034.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus bovienii SS-2004] gi|297629127|emb|CBJ89717.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus nematophila ATCC 19061] Length = 70 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + ++N A G Sbjct: 6 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFT-IENGAKG 61 Query: 64 KYSA 67 +A Sbjct: 62 PAAA 65 >gi|229016986|ref|ZP_04173906.1| Cold shock-like protein cspB [Bacillus cereus AH1273] gi|229023167|ref|ZP_04179678.1| Cold shock-like protein cspB [Bacillus cereus AH1272] gi|228738092|gb|EEL88577.1| Cold shock-like protein cspB [Bacillus cereus AH1272] gi|228744257|gb|EEL94339.1| Cold shock-like protein cspB [Bacillus cereus AH1273] Length = 65 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI +GS DDVF+H SA+ G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIEMDGS----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|227112016|ref|ZP_03825672.1| cold shock-like protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 73 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQ 54 >gi|163839238|ref|YP_001623643.1| cold shock protein [Renibacterium salmoninarum ATCC 33209] gi|162952714|gb|ABY22229.1| cold shock protein [Renibacterium salmoninarum ATCC 33209] Length = 67 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KG+GFIT +G G DVF+H +A+ G +L EGQ V +D Q Sbjct: 3 QGTVKWFNAEKGFGFITVDG---DGGDVFVHWAAIEMDGYRSLEEGQRVEFDIGQG 55 >gi|152987217|ref|YP_001349896.1| cold-shock protein [Pseudomonas aeruginosa PA7] gi|150962375|gb|ABR84400.1| probable cold-shock protein [Pseudomonas aeruginosa PA7] Length = 203 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 139 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 190 >gi|307546402|ref|YP_003898881.1| cold shock protein CspA [Halomonas elongata DSM 2581] gi|307218426|emb|CBV43696.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas elongata DSM 2581] Length = 154 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KGYGFIT + SG+DVF+H A+ G L EGQ V Y +N+ Sbjct: 91 GEVKWFNVNKGYGFITRD----SGEDVFVHFRAIRGRGHRTLAEGQKVKYQVSRNE 142 >gi|299535166|ref|ZP_07048491.1| cold shock protein [Lysinibacillus fusiformis ZC1] gi|298729483|gb|EFI70033.1| cold shock protein [Lysinibacillus fusiformis ZC1] Length = 66 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N +KGYGFI + G+DVF+H + + G L EGQ V++D V+ Sbjct: 1 MQQGIVKWFNNEKGYGFI----ECDDGEDVFVHFTGIQEEGFRTLEEGQKVSFDVVE 53 >gi|271965975|ref|YP_003340171.1| cold-shock DNA-binding domain-containing protein [Streptosporangium roseum DSM 43021] gi|270509150|gb|ACZ87428.1| putative cold-shock DNA-binding domain protein [Streptosporangium roseum DSM 43021] Length = 67 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q + Sbjct: 4 GTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIAAQGYRELQEGQKVSFDITQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|227329249|ref|ZP_03833273.1| cold shock-like protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 73 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQ 54 >gi|71725901|gb|AAZ39069.1| cold shock protein [Exiguobacterium undae] Length = 69 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 5/63 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N ++G+GFI ESGDDVF+H SA+ + G +L EGQ V+++ V+ G Sbjct: 8 GTVKWFNLEEGFGFI----ERESGDDVFVHFSAIQTDGFKSLDEGQEVSFE-VEEGQRGP 62 Query: 65 YSA 67 +A Sbjct: 63 QAA 65 >gi|115377442|ref|ZP_01464645.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|115365540|gb|EAU64572.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] Length = 100 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFIT +G G+DVF H +A+ G L EGQ V +D + Sbjct: 37 GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLQEGQKVQFDVAR 87 >gi|71066401|ref|YP_265128.1| cold-shock DNA-binding protein family protein [Psychrobacter arcticus 273-4] gi|93006957|ref|YP_581394.1| cold-shock DNA-binding domain-containing protein [Psychrobacter cryohalolentis K5] gi|71039386|gb|AAZ19694.1| cold-shock DNA-binding protein family [Psychrobacter arcticus 273-4] gi|92394635|gb|ABE75910.1| cold-shock DNA-binding protein family [Psychrobacter cryohalolentis K5] Length = 69 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFI P E+G DVF H S + +G L EGQ V + Q Sbjct: 5 QKGTVKWFNEAKGFGFIAP----ETGADVFAHYSEITGSGFKTLAEGQEVEFTVTQ 56 >gi|302760539|ref|XP_002963692.1| hypothetical protein SELMODRAFT_451445 [Selaginella moellendorffii] gi|300168960|gb|EFJ35563.1| hypothetical protein SELMODRAFT_451445 [Selaginella moellendorffii] Length = 184 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 44/66 (66%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P +G+GFITP+ + D+F+H++++ + G +L EG++V Y V+ +G+ Sbjct: 17 GKVKWFSPTRGFGFITPD---DGSPDIFVHQTSIHAEGFRSLREGEIVEY-VVELGQDGR 72 Query: 65 YSAENL 70 A N+ Sbjct: 73 MRAGNV 78 >gi|295677819|ref|YP_003606343.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|295437662|gb|ADG16832.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] Length = 67 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+G G+D+F H S + G L E Q VT++ V+ Sbjct: 1 METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRVDGFKTLQENQKVTFE-VKTGP 56 Query: 62 NGKYSAENLKLV 73 GK +A N+K V Sbjct: 57 KGKQAA-NIKPV 67 >gi|148265731|ref|YP_001232437.1| cold-shock DNA-binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146399231|gb|ABQ27864.1| cold-shock DNA-binding protein family [Geobacter uraniireducens Rf4] Length = 66 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI ++G+DVF+H SA+ G +LTEG+ V++D V N G Sbjct: 3 QGKVKWFNDAKGFGFI----EQDNGEDVFVHFSAITGEGFKSLTEGEAVSFD-VTNGPKG 57 Query: 64 KYSAENLKLV 73 A N+K + Sbjct: 58 -LQAANVKKI 66 >gi|126650270|ref|ZP_01722498.1| cold shock protein [Bacillus sp. B14905] gi|126592920|gb|EAZ86902.1| cold shock protein [Bacillus sp. B14905] Length = 66 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 4/51 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW+N +KG+GFI EG G+DVF+H SA+ + G L EGQ V + Sbjct: 3 QGTVKWFNAEKGFGFIAVEG----GNDVFVHFSAIQTDGFKTLEEGQKVEF 49 >gi|319949463|ref|ZP_08023522.1| cold-shock DNA-binding domain protein [Dietzia cinnamea P4] gi|319436867|gb|EFV91928.1| cold-shock DNA-binding domain protein [Dietzia cinnamea P4] Length = 67 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFI P+ + DVF H SA+ +G +L E Q V++D Q A G Sbjct: 4 GTVKWFNADKGFGFIAPDDGSA---DVFAHFSAIQGSGYRSLEENQQVSFDVAQG-AKG- 58 Query: 65 YSAENL 70 AEN+ Sbjct: 59 LQAENI 64 >gi|209693681|ref|YP_002261609.1| cold shock protein [Aliivibrio salmonicida LFI1238] gi|208007632|emb|CAQ77736.1| cold shock protein [Aliivibrio salmonicida LFI1238] Length = 69 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 6 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLKEGQKVSFEVEQ 56 >gi|116669038|ref|YP_829971.1| cold-shock DNA-binding protein family protein [Arthrobacter sp. FB24] gi|116609147|gb|ABK01871.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24] Length = 67 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI P+ + DVF H SA+A++G +L E Q V +D Q + Sbjct: 4 GTVKWFNAEKGFGFIAPD---DGSADVFAHYSAIATSGYRSLDENQKVEFDVTQGPKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENIR 65 >gi|91777186|ref|YP_552394.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|91689846|gb|ABE33044.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] Length = 77 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G+D+F H S V +G +L E Q VT++ V+ GK Sbjct: 14 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEVQGSGFKSLQENQKVTFE-VKQGPKGK 69 Query: 65 YSA 67 +A Sbjct: 70 QAA 72 >gi|309779238|ref|ZP_07674001.1| cold-shock protein [Ralstonia sp. 5_7_47FAA] gi|308922042|gb|EFP67676.1| cold-shock protein [Ralstonia sp. 5_7_47FAA] Length = 67 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+G G D+F H S + +G L +GQ VT++ Q + Sbjct: 4 GTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVTFEVKQGPKGLQ 60 Query: 65 YSA 67 SA Sbjct: 61 ASA 63 >gi|239981276|ref|ZP_04703800.1| cold shock protein [Streptomyces albus J1074] gi|291453133|ref|ZP_06592523.1| cold shock protein [Streptomyces albus J1074] gi|291356082|gb|EFE82984.1| cold shock protein [Streptomyces albus J1074] Length = 67 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +++ G L EGQ V++D Q + Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNISAQGFRELIEGQKVSFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|126654483|ref|ZP_01726209.1| cold shock protein [Bacillus sp. B14905] gi|169828303|ref|YP_001698461.1| cold shock protein [Lysinibacillus sphaericus C3-41] gi|299537124|ref|ZP_07050427.1| cold shock protein [Lysinibacillus fusiformis ZC1] gi|126589048|gb|EAZ83279.1| cold shock protein [Bacillus sp. B14905] gi|168992791|gb|ACA40331.1| Cold shock protein [Lysinibacillus sphaericus C3-41] gi|298727365|gb|EFI67937.1| cold shock protein [Lysinibacillus fusiformis ZC1] Length = 66 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G L EGQ V ++ V D Sbjct: 1 MKQGTVKWFNSEKGFGFIEVEGE----NDVFVHFSAIQGEGFKTLDEGQKVEFEVV--DG 54 Query: 62 NGKYSAENL 70 N A N+ Sbjct: 55 NRGPQAANV 63 >gi|194335526|ref|YP_002017320.1| cold-shock DNA-binding domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308003|gb|ACF42703.1| cold-shock DNA-binding domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 69 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V + Q Sbjct: 6 EGTVKWFNEEKGYGFIEQKG----GKDVFVHHSAINGTGRKTLVEGQKVMMEVTQ 56 >gi|255587236|ref|XP_002534193.1| cold shock domain containing proteins, putative [Ricinus communis] gi|223525720|gb|EEF28187.1| cold shock domain containing proteins, putative [Ricinus communis] Length = 67 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ E G+D+F H S + + G +L E Q V+++ V+ GK Sbjct: 4 GTVKWFNDAKGFGFITPD---EGGEDLFAHFSEIKTEGFKSLQENQKVSFE-VKMGPKGK 59 Query: 65 YSAENLKLV 73 +A N+K V Sbjct: 60 QAA-NIKPV 67 >gi|254244622|ref|ZP_04937944.1| hypothetical protein PA2G_05489 [Pseudomonas aeruginosa 2192] gi|37955684|gb|AAP22523.1| CspA [Pseudomonas aeruginosa] gi|126198000|gb|EAZ62063.1| hypothetical protein PA2G_05489 [Pseudomonas aeruginosa 2192] Length = 69 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 5/59 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP ESG DVF+H + ++G +L EGQ V++ +V A G Sbjct: 7 GTVKWFNEVKGFGFITP----ESGADVFVHFRQIEASGYKSLDEGQRVSF-FVTAGAKG 60 >gi|127512543|ref|YP_001093740.1| cold-shock DNA-binding domain-containing protein [Shewanella loihica PV-4] gi|126637838|gb|ABO23481.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4] Length = 68 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI ESG DVF+H A+ S G L EGQ V + Q + Sbjct: 6 GVVKWFNSDKGFGFI----EQESGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 62 --AENVTVI 68 >gi|261821256|ref|YP_003259362.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] gi|261605269|gb|ACX87755.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] Length = 73 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQ 54 >gi|271970090|ref|YP_003344286.1| cold-shock DNA-binding domain-containing protein [Streptosporangium roseum DSM 43021] gi|270513265|gb|ACZ91543.1| putative cold-shock DNA-binding domain protein [Streptosporangium roseum DSM 43021] Length = 66 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N DKGYGFI +G G DVF+H SA+ G L +GQ V ++ Q Sbjct: 3 QGTVKWFNADKGYGFIAVDG----GKDVFVHYSAIMMDGYRALEQGQRVEFEITQGQKGP 58 Query: 64 KYSAENLKLV 73 + AE+++ V Sbjct: 59 Q--AESVRAV 66 >gi|329937163|ref|ZP_08286762.1| putative cold shock protein [Streptomyces griseoaurantiacus M045] gi|329303444|gb|EGG47330.1| putative cold shock protein [Streptomyces griseoaurantiacus M045] Length = 62 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 7/68 (10%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +KG+GFI +G G DVF H S +A++G L EGQ VT+D Q G+ Sbjct: 1 MKWFNSEKGFGFIEQDGG---GADVFAHYSNIATSGFRELQEGQKVTFDVTQ----GQKG 53 Query: 67 AENLKLVP 74 + +VP Sbjct: 54 PQAENIVP 61 >gi|238898015|ref|YP_002923695.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465773|gb|ACQ67547.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 69 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G +KW+N KG+GFITP+ +++ DVF+H SA+ +G L EGQ V ++ Sbjct: 5 KGKVKWFNESKGFGFITPDDNSK---DVFVHFSAIQDSGFKTLAEGQGVEFE 53 >gi|296127882|ref|YP_003635132.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] gi|296019697|gb|ADG72933.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] Length = 67 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI P ++ DVF H SA+AS+G L E Q V ++ Q Sbjct: 4 GTVKWFNAEKGFGFIAP---SDGSADVFAHYSAIASSGFRTLEENQQVEFEVTQ 54 >gi|169828200|ref|YP_001698358.1| major cold shock protein [Lysinibacillus sphaericus C3-41] gi|168992688|gb|ACA40228.1| Major cold shock protein [Lysinibacillus sphaericus C3-41] Length = 66 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 4/51 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW+N +KG+GFI EG G+DVF+H SA+ + G L EGQ V + Sbjct: 3 QGTVKWFNAEKGFGFIAVEG----GNDVFVHFSAIQTDGFKTLEEGQKVEF 49 >gi|160878713|ref|YP_001557681.1| cold-shock DNA-binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160427379|gb|ABX40942.1| cold-shock DNA-binding domain protein [Clostridium phytofermentans ISDg] Length = 66 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +++G++KW+N KG+GFI S E G+DVF+H S + G +L EGQ V ++ VQ Sbjct: 1 MNKGTVKWFNNQKGFGFI----SDEQGNDVFVHYSGLNMDGFKSLEEGQEVAFEVVQ 53 >gi|239980769|ref|ZP_04703293.1| cold-shock domain-containing protein [Streptomyces albus J1074] gi|291452626|ref|ZP_06592016.1| cold-shock domain-containing protein [Streptomyces albus J1074] gi|291355575|gb|EFE82477.1| cold-shock domain-containing protein [Streptomyces albus J1074] Length = 67 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++P +G+GFIT +G G DVF H S +A+ L EGQ VT+D V + Sbjct: 4 GTVKWFHPARGFGFITQDG---GGADVFAHFSNIAAQDSLELLEGQKVTFDIVMSPKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|156936422|ref|YP_001440338.1| major cold shock protein [Cronobacter sakazakii ATCC BAA-894] gi|156534676|gb|ABU79502.1| hypothetical protein ESA_04323 [Cronobacter sakazakii ATCC BAA-894] Length = 70 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFITP+ ++ DVF+H SA+ + G L EGQ V++ V++ A G Sbjct: 7 GLVKWFNAEKGFGFITPDNGSK---DVFVHFSAIQNNGFKTLEEGQKVSFS-VESGAKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|119946714|ref|YP_944394.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119865318|gb|ABM04795.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFI SG DVF+H SA+AS G L EGQ V + Q Sbjct: 5 EQGTVKWFNEAKGFGFI----EQASGPDVFVHFSAIASEGFKTLAEGQKVEFTVSQ 56 >gi|134300024|ref|YP_001113520.1| cold-shock DNA-binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052724|gb|ABO50695.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens MI-1] Length = 65 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI +E G DVF+H SA+ S G L EG+ V ++ ++ G Sbjct: 2 QGKVKWFNANKGYGFI----ESEIGTDVFVHYSAIQSEGYRTLEEGEPVDFEIIEG-TRG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|270264889|ref|ZP_06193153.1| Cold shock-like protein CspJ [Serratia odorifera 4Rx13] gi|270041187|gb|EFA14287.1| Cold shock-like protein CspJ [Serratia odorifera 4Rx13] Length = 70 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFITP+ ++ DVF+H SA+ S+ L EGQ V + V++ A G Sbjct: 7 GLVKWFNADKGFGFITPQDGSK---DVFVHFSAIQSSDFKTLDEGQKVEFS-VESGAKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 SAVNVIAL 70 >gi|229526207|ref|ZP_04415611.1| cold shock protein CspG [Vibrio cholerae bv. albensis VL426] gi|229336365|gb|EEO01383.1| cold shock protein CspG [Vibrio cholerae bv. albensis VL426] Length = 70 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFI+ + G DVF+H ++ S G L EGQ V++ V+ D G Sbjct: 7 GSVKWFNETKGFGFISQD---NGGQDVFVHFKSIVSEGFKTLAEGQRVSFT-VEQDKKGP 62 Query: 65 YSAENLKL 72 +A+ L Sbjct: 63 QAAQVTAL 70 >gi|160894411|ref|ZP_02075187.1| hypothetical protein CLOL250_01963 [Clostridium sp. L2-50] gi|156863722|gb|EDO57153.1| hypothetical protein CLOL250_01963 [Clostridium sp. L2-50] Length = 71 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KGYGFI+ + + DVF+H SA+ G L EGQ VT+D ++ Sbjct: 1 MNNGTVKWFNAEKGYGFIS---NNDGSGDVFVHFSAIQGEGYKTLVEGQQVTFDTEEDPK 57 Query: 62 NG-KYSAENLKLV 73 G + A N+ +V Sbjct: 58 GGSRTRATNVVIV 70 >gi|256374593|ref|YP_003098253.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] gi|255918896|gb|ACU34407.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] Length = 68 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI +G G DVF+H SA+ G L EG V ++ +Q +G+ Sbjct: 4 GTVKWFNSEKGYGFIAADG----GPDVFVHYSAIMMDGFRTLAEGDRVEFE-IQAGRDGR 58 Query: 65 YSAENLK 71 A +++ Sbjct: 59 SQASDVR 65 >gi|89074299|ref|ZP_01160789.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|90578632|ref|ZP_01234442.1| putative Cold shock-like protein [Vibrio angustum S14] gi|89050003|gb|EAR55537.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|90439465|gb|EAS64646.1| putative Cold shock-like protein [Vibrio angustum S14] Length = 69 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+A G +L EGQ V++D Q Sbjct: 6 GIVKWFNDEKGFGFITQD---NGGADVFVHFRAIAGEGFKSLAEGQKVSFDVEQ 56 >gi|323934238|gb|EGB30662.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1520] Length = 71 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFNSDKGFGFISP---ADGSKDVFVHFSAIQSNNFRTLEEGQQVEFS-IENGAKGP 62 Query: 65 YSAENLKL 72 +A + L Sbjct: 63 AAANVVAL 70 >gi|295394500|ref|ZP_06804723.1| cold shock protein CspA [Brevibacterium mcbrellneri ATCC 49030] gi|294972679|gb|EFG48531.1| cold shock protein CspA [Brevibacterium mcbrellneri ATCC 49030] Length = 67 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N +KGYGFIT +GS + D+F+H S + G +L EGQ V ++ Q D Sbjct: 3 QGTVKWFNAEKGYGFITVDGSDQ---DIFVHYSEIQMDGYRSLQEGQQVEFNVGQGD 56 >gi|294139961|ref|YP_003555939.1| cold shock-like protein cspE [Shewanella violacea DSS12] gi|293326430|dbj|BAJ01161.1| cold shock-like protein cspE [Shewanella violacea DSS12] Length = 68 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58 +G++KW+N DKG+GFITPE ++ D+F+H S + S G + L +GQ V Y+ Q Sbjct: 3 KGTVKWFNADKGFGFITPEDGSK---DLFVHHSEIQSGGDYATLNDGQAVEYEVGQ 55 >gi|269139181|ref|YP_003295882.1| cold shock protein [Edwardsiella tarda EIB202] gi|267984842|gb|ACY84671.1| cold shock protein [Edwardsiella tarda EIB202] gi|304559100|gb|ADM41764.1| Cold shock protein [Edwardsiella tarda FL6-60] Length = 69 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP + DVF+H SA+ + G L EGQ V + +Q+ G Sbjct: 6 GQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQNDGFKTLAEGQQVEFS-IQDSPRGP 61 Query: 65 YSAENLKL 72 +A+ + L Sbjct: 62 AAADVVAL 69 >gi|78485401|ref|YP_391326.1| cold-shock DNA-binding domain-containing protein [Thiomicrospira crunogena XCL-2] gi|78363687|gb|ABB41652.1| cold-shock DNA-binding protein family [Thiomicrospira crunogena XCL-2] Length = 68 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI ESG DVF H SA+ S+G L EGQ V ++ D Sbjct: 6 GTVKWFNESKGFGFI----EQESGPDVFAHFSAIVSSGFKTLAEGQKV--EFTVTDGPKG 59 Query: 65 YSAENL 70 AEN+ Sbjct: 60 PQAENI 65 >gi|310823940|ref|YP_003956298.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1] gi|309397012|gb|ADO74471.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1] Length = 67 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFIT +G G+DVF H +A+ G L EGQ V +D + Sbjct: 4 GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLQEGQKVQFDVAR 54 >gi|300723585|ref|YP_003712890.1| cold shock protein, transcription antiterminator [Xenorhabdus nematophila ATCC 19061] gi|297630107|emb|CBJ90744.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus nematophila ATCC 19061] Length = 69 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP + DVF+H SA+ G L+EGQ V ++ +Q+ G Sbjct: 6 GTVKWFNESKGFGFITP---ADGSKDVFVHFSAIVKDGFKTLSEGQQVEFE-IQDGPKGP 61 Query: 65 YSA 67 +A Sbjct: 62 AAA 64 >gi|145225802|ref|YP_001136480.1| cold-shock DNA-binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315442494|ref|YP_004075373.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] gi|145218288|gb|ABP47692.1| cold-shock DNA-binding protein family [Mycobacterium gilvum PYR-GCK] gi|315260797|gb|ADT97538.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] Length = 67 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 38/55 (69%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N DKG+GFI P+ ++E DVF+H S++ +G +L E Q V ++ Q Sbjct: 3 QGTVKWFNGDKGFGFIAPDNASE---DVFVHYSSITGSGFKSLDENQRVEFEIEQ 54 >gi|15894094|ref|NP_347443.1| cold shock protein [Clostridium acetobutylicum ATCC 824] gi|15023696|gb|AAK78783.1|AE007596_4 Cold shock protein [Clostridium acetobutylicum ATCC 824] gi|325508221|gb|ADZ19857.1| Cold shock protein [Clostridium acetobutylicum EA 2018] Length = 65 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 6/68 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFIT E G+DVF H S + G L EGQ V+YD V+ Sbjct: 3 GTVKWFNGEKGFGFITG----EDGNDVFAHYSQINVDGYKTLEEGQKVSYDVVKGPKG-- 56 Query: 65 YSAENLKL 72 AEN+ L Sbjct: 57 LQAENITL 64 >gi|327440557|dbj|BAK16922.1| cold shock protein [Solibacillus silvestris StLB046] Length = 66 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI EG G+DVF H SA+ G +L EGQ V ++ +++ G Sbjct: 3 QGTVKWFNAEKGFGFIEVEG----GNDVFAHFSAIQGEGFKSLDEGQKVEFE-IEDGQRG 57 Query: 64 KYSAENLKL 72 + +KL Sbjct: 58 PQATNIVKL 66 >gi|293395718|ref|ZP_06640000.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291421655|gb|EFE94902.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 69 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP + DVF+H SA+ S G L EGQ V + +Q+ G Sbjct: 6 GHVKWFNESKGFGFITP---ADGSKDVFVHFSAIVSDGFKTLAEGQQVEFS-IQDSQRGP 61 Query: 65 YSAENLKL 72 +A + + Sbjct: 62 AAANVVAI 69 >gi|297563398|ref|YP_003682372.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847846|gb|ADH69866.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 67 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S + + G L EGQ V +D V A G Sbjct: 4 GTVKWFNGEKGFGFIEQDG---GGPDVFAHYSNIQATGYRELAEGQAVQFDAVAG-AKGP 59 Query: 65 YSAENLKLV 73 AEN+ LV Sbjct: 60 -QAENITLV 67 >gi|297204693|ref|ZP_06922090.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|197710764|gb|EDY54798.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] Length = 67 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +G G DVF H S +A+ G L EGQ VT+D Sbjct: 4 GTVKWFNAAKGFGFIEQDGG---GADVFAHFSNIAAQGFRELLEGQKVTFDIAAGQKG-- 58 Query: 65 YSAENLKL 72 +AEN+ L Sbjct: 59 PTAENIVL 66 >gi|91223643|ref|ZP_01258908.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] gi|91191729|gb|EAS77993.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] Length = 70 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ G D+F+H ++ S G L+EGQ V+ +V N Sbjct: 7 GLVKWFNESKGFGFITPD---NGGSDLFVHFKSIVSDGFKTLSEGQKVS--FVVEQGNKG 61 Query: 65 YSAENLKLV 73 A+N+ LV Sbjct: 62 PQADNVTLV 70 >gi|52220784|ref|YP_086797.1| putative cold shock protein [Lactobacillus plantarum] gi|254555218|ref|YP_003061635.1| cold shock protein CspL [Lactobacillus plantarum JDM1] gi|300766776|ref|ZP_07076690.1| cold-shock protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|21541531|gb|AAM61873.1|AF508808_2 cold shock protein [Lactobacillus plantarum] gi|51965675|emb|CAF32413.1| putative cold shock protein [Lactobacillus plantarum] gi|254044145|gb|ACT60938.1| cold shock protein CspL [Lactobacillus plantarum JDM1] gi|300495652|gb|EFK30806.1| cold-shock protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 66 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N DKG+GFIT GS DVF+H S++ + G +L EGQ V+Y+ Q D Sbjct: 1 MQSGTVKWFNADKGFGFIT--GSDNK--DVFVHFSSIQTDGFKSLDEGQKVSYEVEQGD 55 >gi|253698845|ref|YP_003020034.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] gi|251773695|gb|ACT16276.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] Length = 66 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N KG+GFI E+G+DVF+H SA+ G +L EG VT+D Q Sbjct: 3 KGVVKWFNDSKGFGFI----EQENGEDVFVHFSAIQGEGFKSLAEGDSVTFDVQQ 53 >gi|119945641|ref|YP_943321.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119864245|gb|ABM03722.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFI SG DVF+H SA+AS G L EGQ V + Q Sbjct: 5 EQGTVKWFNEAKGFGFI----EQASGPDVFVHFSAIASEGFKTLAEGQKVEFTVSQ 56 >gi|320353121|ref|YP_004194460.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus DSM 2032] gi|320121623|gb|ADW17169.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus DSM 2032] Length = 67 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +G G DVF+H SA+ + G +L EG+ V+++ V + A G Sbjct: 4 GTVKWFNDSKGFGFIAQDG----GKDVFVHHSAIQADGFKSLQEGERVSFNVV-DGAKGP 58 Query: 65 YSAENLK 71 +A +K Sbjct: 59 AAANVIK 65 >gi|281490768|ref|YP_003352748.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|281374537|gb|ADA64058.1| Cold-shock protein [Lactococcus lactis subsp. lactis KF147] Length = 91 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N KG+GFIT +E G D+F H SA+ S G +L EGQ V +D Sbjct: 25 IMANGTVKWFNATKGFGFIT----SEDGQDLFAHFSAIQSDGFKSLDEGQKVEFD 75 >gi|109898691|ref|YP_661946.1| cold-shock DNA-binding domain-containing protein [Pseudoalteromonas atlantica T6c] gi|109700972|gb|ABG40892.1| cold-shock DNA-binding protein family [Pseudoalteromonas atlantica T6c] Length = 84 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI PE + GDD+F H S + G +L GQ V YD VQ G Sbjct: 16 GKVKWFNNAKGFGFIVPE---DGGDDIFAHYSTIQMEGYRSLKAGQEVKYD-VQQGPKGL 71 Query: 65 YSAENL 70 + AEN+ Sbjct: 72 H-AENI 76 >gi|330830980|ref|YP_004393932.1| Cold shock-like protein cspE [Aeromonas veronii B565] gi|328806116|gb|AEB51315.1| Cold shock-like protein cspE [Aeromonas veronii B565] Length = 69 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI G DVF+H S++ S G L EGQ V + Q Sbjct: 4 IRTGQVKWFNETKGFGFI----EQSQGPDVFVHFSSIQSTGFKTLAEGQKVQFTVTQGKK 59 Query: 62 NGKYSAENLKLV 73 + AEN+ LV Sbjct: 60 GPQ--AENVTLV 69 >gi|260775771|ref|ZP_05884667.1| putative cold-shock DNA-binding domain protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608187|gb|EEX34356.1| putative cold-shock DNA-binding domain protein [Vibrio coralliilyticus ATCC BAA-450] Length = 70 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N KG+GFI P+ T DVF+H ++AS G L EGQ V ++ Q Sbjct: 7 GSVKWFNETKGFGFIAPDNGTA---DVFVHFRSIASDGFKTLAEGQKVAFNVEQ 57 >gi|255531845|ref|YP_003092217.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366] gi|255344829|gb|ACU04155.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366] Length = 68 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N KG+GFITPE + G D+F+H SA+A L EG V ++ ND Sbjct: 1 MRTTGKVKWFNSAKGFGFITPE---DGGKDIFVHFSAIAGDSFRELNEGDSVEFEL--ND 55 Query: 61 ANGKYSAENLKLV 73 A+N+ ++ Sbjct: 56 GKKGPEAQNVTVL 68 >gi|297801940|ref|XP_002868854.1| hypothetical protein ARALYDRAFT_912317 [Arabidopsis lyrata subsp. lyrata] gi|297314690|gb|EFH45113.1| hypothetical protein ARALYDRAFT_912317 [Arabidopsis lyrata subsp. lyrata] Length = 195 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 4/65 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +GS+KW++ KG+GFITP+ + GDD+F+H+S++ S G +L + V ++ V+ D N Sbjct: 11 RKGSVKWFDTQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLAADEAVEFE-VEMDNN 66 Query: 63 GKYSA 67 + A Sbjct: 67 SRPKA 71 >gi|282863823|ref|ZP_06272881.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|282561524|gb|EFB67068.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG G DVF H S + + G L EGQ V +D Q + Sbjct: 4 GTVKWFNSEKGFGFIEQEG---GGADVFAHYSNILAQGFRELQEGQKVNFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|258622545|ref|ZP_05717567.1| cold shock domain family protein [Vibrio mimicus VM573] gi|258625538|ref|ZP_05720427.1| cold shock domain family protein [Vibrio mimicus VM603] gi|262164476|ref|ZP_06032214.1| cold shock protein CspA [Vibrio mimicus VM223] gi|262173410|ref|ZP_06041087.1| cold shock protein CspA [Vibrio mimicus MB-451] gi|262403011|ref|ZP_06079571.1| cold shock protein CspA [Vibrio sp. RC586] gi|258582182|gb|EEW07042.1| cold shock domain family protein [Vibrio mimicus VM603] gi|258585245|gb|EEW09972.1| cold shock domain family protein [Vibrio mimicus VM573] gi|261890768|gb|EEY36755.1| cold shock protein CspA [Vibrio mimicus MB-451] gi|262026856|gb|EEY45523.1| cold shock protein CspA [Vibrio mimicus VM223] gi|262350510|gb|EEY99643.1| cold shock protein CspA [Vibrio sp. RC586] Length = 70 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N KG+GF+T + G+DVF+H +++ S G LTEGQ V++ Q Sbjct: 7 GSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLTEGQRVSFTVEQ 57 >gi|54026196|ref|YP_120438.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54017704|dbj|BAD59074.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 68 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI +G G DVF+H SAV+ +G +L EGQ V ++ Q Sbjct: 3 QGIVKWFNSEKGFGFIAQDGG---GPDVFVHYSAVSGSGFRSLDEGQRVEFEIGQGQKGP 59 Query: 64 KYSAENLKLV 73 + A+++++V Sbjct: 60 Q--AQDVRVV 67 >gi|322832237|ref|YP_004212264.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|321167438|gb|ADW73137.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] Length = 69 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y +Q+ G Sbjct: 6 GQVKWFNESKGFGFIE---QADGGKDVFVHFSAIATDGFKTLAEGQRVEYT-IQDSPRGP 61 Query: 65 YSAENLKL 72 +A + L Sbjct: 62 AAANVIAL 69 >gi|260886462|ref|ZP_05897725.1| conserved domain protein [Selenomonas sputigena ATCC 35185] gi|330839687|ref|YP_004414267.1| cold-shock DNA-binding domain protein [Selenomonas sputigena ATCC 35185] gi|260863801|gb|EEX78301.1| conserved domain protein [Selenomonas sputigena ATCC 35185] gi|329747451|gb|AEC00808.1| cold-shock DNA-binding domain protein [Selenomonas sputigena ATCC 35185] Length = 66 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G +KW++ +KGYGFI E GDDVF+H SA+ G L EGQ V ++ V+ Sbjct: 3 GKVKWFSAEKGYGFI----EREDGDDVFVHFSAIQGDGFKTLAEGQGVEFEIVEG 53 >gi|238757593|ref|ZP_04618777.1| Cold shock-like protein cspD [Yersinia aldovae ATCC 35236] gi|238704098|gb|EEP96631.1| Cold shock-like protein cspD [Yersinia aldovae ATCC 35236] Length = 85 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D V Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFD-VHQGP 56 Query: 62 NGKYSAENLKLV 73 G +++ + LV Sbjct: 57 KGNHASLIVPLV 68 >gi|225175289|ref|ZP_03729284.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] gi|225169041|gb|EEG77840.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] Length = 65 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI E G DVF+H SA+ G +L EG+ V ++ V+ G Sbjct: 3 GKVKWFNQEKGYGFI----EREDGGDVFVHYSAIQQEGFKSLAEGEEVEFEIVEG-TRGP 57 Query: 65 YSAENLKL 72 +A +KL Sbjct: 58 QAANVVKL 65 >gi|108799262|ref|YP_639459.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. MCS] gi|119868378|ref|YP_938330.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. KMS] gi|126434920|ref|YP_001070611.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. JLS] gi|108769681|gb|ABG08403.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS] gi|119694467|gb|ABL91540.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS] gi|126234720|gb|ABN98120.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P+G + DDVF+H S + G +L E Q V ++ Q Sbjct: 3 QGTVKWFNSEKGFGFIAPDGGS---DDVFVHYSEIQGGGFRSLEENQRVEFEIGQ 54 >gi|125624064|ref|YP_001032547.1| cold shock-like protein cspD2 [Lactococcus lactis subsp. cremoris MG1363] gi|125624081|ref|YP_001032564.1| cold shock protein cspD [Lactococcus lactis subsp. cremoris MG1363] gi|3850776|emb|CAA76697.1| cold shock protein D [Lactococcus lactis subsp. cremoris MG1363] gi|124492872|emb|CAL97830.1| cold shock-like protein cspD2 [Lactococcus lactis subsp. cremoris MG1363] gi|124492889|emb|CAL97848.1| cold shock protein cspD [Lactococcus lactis subsp. cremoris MG1363] gi|300070833|gb|ADJ60233.1| Cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000] gi|300070850|gb|ADJ60250.1| Cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000] gi|326407854|gb|ADZ64925.1| cold shock protein [Lactococcus lactis subsp. lactis CV56] Length = 66 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFIT +E G D+F H SA+ S G +L EGQ V +D Sbjct: 4 GTVKWFNATKGFGFIT----SEDGQDLFAHFSAIQSDGFKSLDEGQKVEFD 50 >gi|312795894|ref|YP_004028816.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] gi|312167669|emb|CBW74672.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+G G+D+F H S + G +L E Q VTY+ V+ Sbjct: 1 METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRMDGFKSLQENQKVTYE-VKMGP 56 Query: 62 NGKYSA 67 GK +A Sbjct: 57 KGKQAA 62 >gi|289549550|ref|YP_003470454.1| Cold shock protein CspC [Staphylococcus lugdunensis HKU09-01] gi|289179082|gb|ADC86327.1| Cold shock protein CspC [Staphylococcus lugdunensis HKU09-01] Length = 66 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N +KG+GFI E G+DVF+H S +A G L EGQ V +D + Sbjct: 1 MNNGTVKWFNAEKGFGFI----EREDGNDVFVHFSGIAGEGYKTLEEGQKVEFDITE 53 >gi|145595639|ref|YP_001159936.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440] gi|159038893|ref|YP_001538146.1| cold-shock DNA-binding domain-containing protein [Salinispora arenicola CNS-205] gi|145304976|gb|ABP55558.1| cold-shock DNA-binding protein family [Salinispora tropica CNB-440] gi|157917728|gb|ABV99155.1| cold-shock DNA-binding domain protein [Salinispora arenicola CNS-205] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF+H S+++ +G L+EGQ V +D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDGG---GPDVFVHYSSISMSGYRELSEGQKVDFDVTQ 54 >gi|229820912|ref|YP_002882438.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM 12333] gi|229566825|gb|ACQ80676.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM 12333] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFI +G G DVF+H SA+ S G +L E Q V ++ Q Sbjct: 3 QGTVKWFNSEKGYGFIAQDG---GGADVFVHYSAIESDGYRSLEEAQRVEFEITQ 54 >gi|94499152|ref|ZP_01305690.1| putative cold-shock DNA-binding domain protein [Oceanobacter sp. RED65] gi|94428784|gb|EAT13756.1| putative cold-shock DNA-binding domain protein [Oceanobacter sp. RED65] Length = 68 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF+H SA+ +G L EGQ VT Q Sbjct: 6 GTVKWFNDEKGFGFIQQDG----GKDVFVHYSAIQGSGRRTLAEGQQVTMTVTQ 55 >gi|21222143|ref|NP_627922.1| cold-shock protein [Streptomyces coelicolor A3(2)] gi|256786771|ref|ZP_05525202.1| cold-shock protein [Streptomyces lividans TK24] gi|289770662|ref|ZP_06530040.1| cold-shock protein [Streptomyces lividans TK24] gi|7210998|emb|CAB76978.1| cold-shock protein [Streptomyces coelicolor A3(2)] gi|289700861|gb|EFD68290.1| cold-shock protein [Streptomyces lividans TK24] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S + + G L EGQ VT+D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNINAQGFRELLEGQKVTFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|170736784|ref|YP_001778044.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169818972|gb|ACA93554.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia MC0-3] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N +KG+GFITP+ GDD+F H S + G L EGQ V+Y+ Sbjct: 4 GTVKWFNDNKGFGFITPD---SGGDDLFAHFSEIRGDGFKTLAEGQKVSYE 51 >gi|134097136|ref|YP_001102797.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291009809|ref|ZP_06567782.1| cold shock protein [Saccharopolyspora erythraea NRRL 2338] gi|133909759|emb|CAL99871.1| cold-shock DNA-binding domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI +T+ G DVF+H SA+ +G L EG V ++ V+ +G+ Sbjct: 4 GTVKWFNSEKGYGFI----ATDGGSDVFVHYSAINMSGFRTLAEGDRVEFE-VKAGRDGR 58 Query: 65 YSAENLK 71 A+ ++ Sbjct: 59 SQADGVR 65 >gi|187921538|ref|YP_001890570.1| cold-shock DNA-binding domain-containing protein [Burkholderia phytofirmans PsJN] gi|296158545|ref|ZP_06841375.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|187719976|gb|ACD21199.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|295891113|gb|EFG70901.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G+D+F H S V +G +L E Q VT++ V+ GK Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEVQGSGFKSLQENQKVTFE-VKQGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|256396570|ref|YP_003118134.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256362796|gb|ACU76293.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 68 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V+++ Q G+ Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGADVFAHFSNIAADGYRELQEGQRVSFEVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + + +VP Sbjct: 57 KGPQAVNIVP 66 >gi|186474439|ref|YP_001863410.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184198398|gb|ACC76360.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G+D+F H S + + G +L E Q V++D V+ GK Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIKTEGFKSLQENQKVSFD-VKMGPKGK 59 Query: 65 YSAENLKLV 73 +A N+K V Sbjct: 60 QAA-NIKPV 67 >gi|261250705|ref|ZP_05943279.1| putative Cold shock-like protein [Vibrio orientalis CIP 102891] gi|260937578|gb|EEX93566.1| putative Cold shock-like protein [Vibrio orientalis CIP 102891] Length = 70 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GF+T + G DVF+H A+AS G L EGQ V+++ Q G+ Sbjct: 7 GSVKWFNETKGFGFLTQD---NGGADVFVHFRAIASDGFKTLNEGQKVSFEVEQ----GQ 59 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 60 KGLQAANVVP 69 >gi|260772014|ref|ZP_05880931.1| putative Cold shock-like protein [Vibrio metschnikovii CIP 69.14] gi|260612881|gb|EEX38083.1| putative Cold shock-like protein [Vibrio metschnikovii CIP 69.14] Length = 70 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GF++ + G DVF+H +A+AS G L EGQ V++ V+N G Sbjct: 7 GTVKWFNETKGFGFLSQD---NGGADVFVHFNAIASEGFKTLIEGQKVSF-VVENGQKGL 62 Query: 65 YSAENLKL 72 +A+ + L Sbjct: 63 QAAQVVTL 70 >gi|187929805|ref|YP_001900292.1| cold-shock DNA-binding domain-containing protein [Ralstonia pickettii 12J] gi|241663931|ref|YP_002982291.1| cold-shock DNA-binding domain-containing protein [Ralstonia pickettii 12D] gi|309781480|ref|ZP_07676216.1| cold-shock protein [Ralstonia sp. 5_7_47FAA] gi|187726695|gb|ACD27860.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|240865958|gb|ACS63619.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] gi|308919893|gb|EFP65554.1| cold-shock protein [Ralstonia sp. 5_7_47FAA] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+P+ E G+++F H SA+ AG L E Q V+++ Q Sbjct: 4 GTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMAGFKTLKENQRVSFEVTQ 54 >gi|330817033|ref|YP_004360738.1| Cold-shock DNA-binding domain protein [Burkholderia gladioli BSR3] gi|327369426|gb|AEA60782.1| Cold-shock DNA-binding domain protein [Burkholderia gladioli BSR3] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G+D+F+H S + G +L + Q V Y+ V+N GK Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFVHFSEIKITGFKSLYDNQRVRYE-VRNGPKGK 59 Query: 65 YSAE 68 ++A+ Sbjct: 60 HAAD 63 >gi|225568420|ref|ZP_03777445.1| hypothetical protein CLOHYLEM_04497 [Clostridium hylemonae DSM 15053] gi|225162648|gb|EEG75267.1| hypothetical protein CLOHYLEM_04497 [Clostridium hylemonae DSM 15053] Length = 66 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++RG++KW+N KGYGFI S E+G+DVF+H S + G +L EGQ V ++ + Sbjct: 1 MNRGTVKWFNNQKGYGFI----SDETGNDVFVHYSGLNMDGFKSLEEGQEVEFEVTE 53 >gi|225023806|ref|ZP_03712998.1| hypothetical protein EIKCOROL_00671 [Eikenella corrodens ATCC 23834] gi|224943405|gb|EEG24614.1| hypothetical protein EIKCOROL_00671 [Eikenella corrodens ATCC 23834] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ Sbjct: 4 GTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMNGFKTLKEGQKVSFE 51 >gi|210608483|ref|ZP_03287859.1| hypothetical protein CLONEX_00038 [Clostridium nexile DSM 1787] gi|210153059|gb|EEA84065.1| hypothetical protein CLONEX_00038 [Clostridium nexile DSM 1787] Length = 66 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGFI S E+G+DVF+H S + G +L EGQ V ++ V A Sbjct: 1 MNKGTVKWFNNQKGYGFI----SDEAGNDVFVHYSGLNMEGFKSLEEGQEVEFE-VTEGA 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 KGPQAVNVVKL 66 >gi|170722579|ref|YP_001750267.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida W619] gi|169760582|gb|ACA73898.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619] Length = 83 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G T DD+F H SA+ G L GQ VT++ VQ Sbjct: 4 GKVKWFNNAKGYGFINEDGKT---DDLFAHYSAIKMDGYKTLKAGQAVTFEIVQ 54 >gi|284043353|ref|YP_003393693.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] gi|283947574|gb|ADB50318.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 3/60 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ DKG+GFITP+ + G D+F+H S ++ G +L EG V+Y+ Q D K Sbjct: 4 GTVKWFSDDKGFGFITPD---DGGRDLFVHYSGISGDGYRSLPEGSKVSYEEEQGDKGPK 60 >gi|86157700|ref|YP_464485.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|197122991|ref|YP_002134942.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|220917780|ref|YP_002493084.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|85774211|gb|ABC81048.1| cold-shock DNA-binding protein family [Anaeromyxobacter dehalogenans 2CP-C] gi|196172840|gb|ACG73813.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|219955634|gb|ACL66018.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI+ +G G+DVF+H +A+ + G +L EGQ V ++ Sbjct: 4 GTVKWFNDAKGFGFISQDG---GGEDVFVHHTAIVAEGFRSLQEGQRVEFE 51 >gi|152967580|ref|YP_001363364.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] gi|151362097|gb|ABS05100.1| putative cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFIT + + G DVF+H SA+ + G +L EGQ V ++ Q Sbjct: 3 QGTVKWFNSEKGYGFITVD---DGGADVFVHYSAITADGYRSLEEGQRVEFEVGQ 54 >gi|197284798|ref|YP_002150670.1| cold shock protein [Proteus mirabilis HI4320] gi|227357798|ref|ZP_03842147.1| cold shock protein [Proteus mirabilis ATCC 29906] gi|194682285|emb|CAR42037.1| cold shock protein [Proteus mirabilis HI4320] gi|227162127|gb|EEI47141.1| cold shock protein [Proteus mirabilis ATCC 29906] Length = 70 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N DKG+GFITP+ ++ DVF+H SA+ S +L EGQ V++ Sbjct: 7 GTVKWFNDDKGFGFITPKDGSK---DVFVHYSAIQSDDFKSLMEGQEVSF 53 >gi|119898412|ref|YP_933625.1| cold shock-like protein [Azoarcus sp. BH72] gi|119670825|emb|CAL94738.1| cold shock-like protein [Azoarcus sp. BH72] Length = 69 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITPE GDD+F H S + S+G +L E Q V ++ Sbjct: 3 TQTGTVKWFNDAKGFGFITPE---NGGDDLFAHFSEIQSSGFKSLAENQRVEFE 53 >gi|310823251|ref|YP_003955609.1| Cold-shock protein CspB [Stigmatella aurantiaca DW4/3-1] gi|309396323|gb|ADO73782.1| Cold-shock protein CspB [Stigmatella aurantiaca DW4/3-1] Length = 67 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI + E+G+DVF H SA+ G L EGQ V ++ + Sbjct: 4 GTVKWFNDAKGFGFI----AQENGEDVFCHHSAINMDGFRTLAEGQKVEFEVTRGPKG-- 57 Query: 65 YSAENLKLV 73 + A+N++ V Sbjct: 58 FQAQNVRAV 66 >gi|254786018|ref|YP_003073447.1| cold shock domain-containing protein CspD [Teredinibacter turnerae T7901] gi|237686702|gb|ACR13966.1| cold shock domain protein CspD [Teredinibacter turnerae T7901] Length = 95 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI PEG G+D+F H S+V G L GQ V++D Q D Sbjct: 4 GTVKWFNNAKGFGFILPEG---GGEDLFAHYSSVEMDGYRTLKAGQPVSFDIEQGD 56 >gi|304311205|ref|YP_003810803.1| Cold-shock protein CspD [gamma proteobacterium HdN1] gi|301796938|emb|CBL45151.1| Cold-shock protein CspD [gamma proteobacterium HdN1] Length = 97 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 5/74 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KGYGFI P+G GDD+F+H S + G +L GQ+VTY+ +A Sbjct: 4 GKVKWFNNAKGYGFIRPDG---EGDDLFVHYSYIHMDGYKSLKAGQVVTYEI--REAPKG 58 Query: 65 YSAENLKLVPKSSN 78 A N+ LV + + Sbjct: 59 LHAVNIGLVEHAHD 72 >gi|294013110|ref|YP_003546570.1| cold shock protein CspA [Sphingobium japonicum UT26S] gi|292676440|dbj|BAI97958.1| cold shock protein CspA [Sphingobium japonicum UT26S] Length = 272 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K++N KG+GFI + + G+DVF+H SAV AGL L EGQ + + V D GK Sbjct: 102 GVVKFFNGQKGFGFIVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLGFTLV--DRGGK 156 Query: 65 YSAENLKL 72 SA +LK+ Sbjct: 157 VSATDLKI 164 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AG+ L EG + ++ ++ D GK Sbjct: 206 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMSALNEGDRLDFE-LEVDRRGK 261 Query: 65 YSAENLK 71 Y+A NL+ Sbjct: 262 YAAVNLQ 268 >gi|296132465|ref|YP_003639712.1| cold-shock DNA-binding domain protein [Thermincola sp. JR] gi|296031043|gb|ADG81811.1| cold-shock DNA-binding domain protein [Thermincola potens JR] Length = 65 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N +KG+GFI +G DVF+H SA+ + G L EG+ V +D VQ + Sbjct: 2 EGTVKWFNAEKGFGFI----EASNGSDVFVHFSAIQNEGFKTLEEGEKVFFDIVQGN 54 >gi|114705002|ref|ZP_01437910.1| cold shock protein [Fulvimarina pelagi HTCC2506] gi|114539787|gb|EAU42907.1| cold shock protein [Fulvimarina pelagi HTCC2506] Length = 70 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N +KG+GFI P+ G D+F+H SAV ++GL L E Q V+++ + D Sbjct: 1 MAQTGTVKFFNTEKGFGFIKPD---NGGADIFVHISAVQASGLAGLEENQKVSFE-TEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KRGK 60 >gi|84386379|ref|ZP_00989407.1| putative Cold shock-like protein [Vibrio splendidus 12B01] gi|86146530|ref|ZP_01064852.1| putative Cold shock-like protein [Vibrio sp. MED222] gi|218708238|ref|YP_002415859.1| putative cold shock protein [Vibrio splendidus LGP32] gi|84378803|gb|EAP95658.1| putative Cold shock-like protein [Vibrio splendidus 12B01] gi|85835587|gb|EAQ53723.1| putative Cold shock-like protein [Vibrio sp. MED222] gi|218321257|emb|CAV17207.1| putative cold shock protein [Vibrio splendidus LGP32] Length = 70 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GF+T + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 7 GVVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQ 57 >gi|223470486|gb|ACM90505.1| cold shock protein [Psychromonas arctica] Length = 68 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q Sbjct: 5 QGTVKWFNESKGFGFI----EQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGPKGP 60 Query: 64 KYSAENL 70 + AEN+ Sbjct: 61 Q--AENI 65 >gi|225181192|ref|ZP_03734638.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168161|gb|EEG76966.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] Length = 65 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N +KG+GFI G+DVF+H SA+ + G L EGQ V +D V+ Sbjct: 2 QGKVKWFNAEKGFGFI----ERPDGEDVFVHFSAIQAEGFKTLEEGQDVEFDVVE 52 >gi|326407203|gb|ADZ64274.1| cold shock protein ,beta-ribbon, CspA family [Lactococcus lactis subsp. lactis CV56] Length = 66 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI S+E G D+F H SA+ S G +L EGQ V +D Sbjct: 4 GTVKWFNATKGFGFI----SSEDGQDLFAHFSAIQSDGFKSLDEGQKVEFD 50 >gi|302538395|ref|ZP_07290737.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302447290|gb|EFL19106.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 67 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q G+ Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATQGYRELQEGQKVNFDVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 57 KGPQAENIVP 66 >gi|254508069|ref|ZP_05120196.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus 16] gi|323496408|ref|ZP_08101466.1| cold-shock protein, DNA-binding [Vibrio sinaloensis DSM 21326] gi|219549036|gb|EED26034.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus 16] gi|323318685|gb|EGA71638.1| cold-shock protein, DNA-binding [Vibrio sinaloensis DSM 21326] Length = 70 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFIT E G DVF+H A+ G L EGQ V ++ Q Sbjct: 7 GTVKWFNEEKGFGFITQE---NGGADVFVHFRAITGEGFKTLAEGQKVAFEVEQ 57 >gi|71983217|ref|NP_001021085.1| abnormal cell LINeage family member (lin-28) [Caenorhabditis elegans] gi|74961916|sp|P92186|LIN28_CAEEL RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage protein 28 gi|1763342|gb|AAB49759.1| Lin-28 [Caenorhabditis elegans] gi|1763344|gb|AAC47476.1| LIN-28 [Caenorhabditis elegans] gi|6434275|emb|CAB61008.1| C. elegans protein F02E9.2a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 227 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 55 GSCKWFNVSKGYGFVIDDI---TGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110 >gi|294142287|ref|YP_003558265.1| cold shock-like protein cspG [Shewanella violacea DSS12] gi|22256741|sp|Q9S170|CSPG_SHEVD RecName: Full=Cold shock-like protein CspG gi|5869509|dbj|BAA84218.1| CspG [Shewanella violacea] gi|293328756|dbj|BAJ03487.1| cold shock-like protein cspG [Shewanella violacea DSS12] Length = 70 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + GDDVF+H ++ S G L EGQ V+++ Q Sbjct: 7 GLVKWFNEEKGFGFITQD---NGGDDVFVHFRSITSDGFKTLAEGQKVSFEVEQ 57 >gi|71983225|ref|NP_492281.2| abnormal cell LINeage family member (lin-28) [Caenorhabditis elegans] gi|6434276|emb|CAB61009.1| C. elegans protein F02E9.2b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 196 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 24 GSCKWFNVSKGYGFVIDDI---TGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 79 >gi|21219062|ref|NP_624841.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|256789924|ref|ZP_05528355.1| cold shock protein [Streptomyces lividans TK24] gi|289773805|ref|ZP_06533183.1| cold shock protein scoF [Streptomyces lividans TK24] gi|1345847|sp|P48859|CSPF_STRCO RecName: Full=Cold shock protein ScoF gi|1067201|emb|CAA63367.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|6137029|emb|CAB59584.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|117164740|emb|CAJ88288.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|289704004|gb|EFD71433.1| cold shock protein scoF [Streptomyces lividans TK24] Length = 67 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S + + G L EGQ VT+D Q + Sbjct: 4 GTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNINAQGYRELQEGQAVTFDITQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|315303807|ref|ZP_07874300.1| conserved domain protein [Listeria ivanovii FSL F6-596] gi|313627819|gb|EFR96459.1| conserved domain protein [Listeria ivanovii FSL F6-596] Length = 66 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N +KGYGFI +G G+D+F+H +A+ G +L EGQ V ++ V+ + Sbjct: 1 MQNGKVKWFNNEKGYGFIESDG----GEDIFVHFTAIQGDGYKSLEEGQAVIFEVVEGN 55 >gi|302536155|ref|ZP_07288497.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302445050|gb|EFL16866.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 67 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q V +D Q Sbjct: 4 GTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVNFDVTQ 54 >gi|307293725|ref|ZP_07573569.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306879876|gb|EFN11093.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 275 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K++N KG+GFI + + G+DVF+H SAV AGL L EGQ + + V D GK Sbjct: 107 GVVKFFNGQKGFGFIVRD---DGGEDVFVHISAVEQAGLTGLAEGQQLGFTLV--DRGGK 161 Query: 65 YSAENLKL 72 SA +LK+ Sbjct: 162 VSATDLKI 169 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AG+ L EG + ++ ++ D GK Sbjct: 209 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMSALNEGDRLDFE-LEVDRRGK 264 Query: 65 YSAENLK 71 Y+A NL+ Sbjct: 265 YAAVNLQ 271 >gi|322420218|ref|YP_004199441.1| cold-shock DNA-binding domain-containing protein [Geobacter sp. M18] gi|320126605|gb|ADW14165.1| cold-shock DNA-binding domain protein [Geobacter sp. M18] Length = 66 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+ E+G+DVF H SA+ G +L EG VT+D V+ Sbjct: 4 GTVKWFNDSKGFGFL----EQENGEDVFCHFSAITGDGFKSLAEGDRVTFDLVK 53 >gi|312880812|ref|ZP_07740612.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM 12260] gi|310784103|gb|EFQ24501.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM 12260] Length = 67 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N KGYGFIT T+ G DVF H SA+ G L EG V+ D V+ Sbjct: 1 MATQGTVKWFNATKGYGFIT----TDEGRDVFCHFSAIKMDGYKALDEGVRVSLD-VEMG 55 Query: 61 ANGKYSAENLKL 72 G+ +A +KL Sbjct: 56 PKGEQAANVVKL 67 >gi|283796457|ref|ZP_06345610.1| cold shock protein [Clostridium sp. M62/1] gi|291075865|gb|EFE13229.1| cold shock protein [Clostridium sp. M62/1] gi|295091398|emb|CBK77505.1| cold-shock DNA-binding protein family [Clostridium cf. saccharolyticum K10] Length = 66 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H+G++KW+N KGYGFI E G+DVF+H S + G +L EG V ++ V N A Sbjct: 1 MHKGTVKWFNNQKGYGFICD----EEGNDVFVHYSGLNMEGFKSLDEGAQVEFEVV-NGA 55 Query: 62 NGKYSAENLKL 72 G + KL Sbjct: 56 KGPQATNVTKL 66 >gi|119717093|ref|YP_924058.1| cold-shock DNA-binding protein family protein [Nocardioides sp. JS614] gi|119537754|gb|ABL82371.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614] Length = 67 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N DKG+GFI +G G DVF+H +A+A G +L + Q V ++ Q Sbjct: 3 QGTVKWFNDDKGFGFIAQDG---GGPDVFVHHTAIAGTGFKSLKDDQRVEFEVTQGPKGP 59 Query: 64 KYSAENLK 71 + AEN++ Sbjct: 60 Q--AENVR 65 >gi|71725899|gb|AAZ39068.1| cold shock protein [Exiguobacterium antarcticum] Length = 67 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 4/49 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G +KW+N +KG+GFI ESGDDVF+H SA+ + G +L EGQ V+ Sbjct: 4 GKVKWFNAEKGFGFI----ERESGDDVFVHFSAIQTDGFKSLDEGQEVS 48 >gi|207722622|ref|YP_002253058.1| cold shock-like protein [Ralstonia solanacearum MolK2] gi|300696567|ref|YP_003747228.1| Cold shock DNA binding protein (transcriptional regulator) [Ralstonia solanacearum CFBP2957] gi|206587804|emb|CAQ18386.1| cold shock-like protein [Ralstonia solanacearum MolK2] gi|299073291|emb|CBJ52800.1| Cold shock DNA binding protein (transcription regulator) [Ralstonia solanacearum CFBP2957] Length = 67 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G++KW+N KG+GFITP+G G D+F H S + AG L +GQ V+++ Q Sbjct: 4 GTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGAGFKTLKDGQKVSFEVKQG 55 >gi|88606701|ref|YP_504760.1| CSD family cold shock protein [Anaplasma phagocytophilum HZ] gi|88597764|gb|ABD43234.1| cold shock protein, CSD family [Anaplasma phagocytophilum HZ] Length = 89 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 10/79 (12%) Query: 5 GSIKWYNPDKGYGFI---TPEGSTESG-----DDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G +KW++ +KGYGFI + EGS S DVF+H +++ + + NL EGQ V Y Sbjct: 13 GHVKWFSVEKGYGFICKDSSEGSKGSAMGHGEKDVFVHITSLQRSRIDNLREGQKVRYQL 72 Query: 57 VQNDANGKYSAENLKLVPK 75 +N NGK SA NL+++ + Sbjct: 73 DEN--NGKVSAVNLEVLSE 89 >gi|332685716|ref|YP_004455490.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311] gi|332369725|dbj|BAK20681.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311] Length = 66 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N +KG+GFI S E G DVF+H SA+ G L E Q VT+D +++ Sbjct: 1 MEHGTVKWFNAEKGFGFI----SREDGSDVFVHFSAIQGDGFKTLEEDQPVTFDVEESE 55 >gi|332526271|ref|ZP_08402400.1| cold-shock DNA-binding protein family protein [Rubrivivax benzoatilyticus JA2] gi|332110105|gb|EGJ10733.1| cold-shock DNA-binding protein family protein [Rubrivivax benzoatilyticus JA2] Length = 79 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G DVF H SAV G L +G V ++ VQ Sbjct: 4 GTVKWFNDAKGFGFIEPEG---GGADVFAHFSAVQMDGFRTLKQGSRVEFELVQ 54 >gi|291301635|ref|YP_003512913.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290570855|gb|ADD43820.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis DSM 44728] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G+ DVF+H SA+ + G L+EGQ V ++ Q + Sbjct: 4 GTVKWFNAEKGFGFIERDGNE---PDVFVHFSAIQTQGYRELSEGQKVEFEVTQGQKGPQ 60 Query: 65 YSAENLK 71 AEN+K Sbjct: 61 --AENVK 65 >gi|50121583|ref|YP_050750.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043] gi|49612109|emb|CAG75559.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043] Length = 73 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFD 51 >gi|24112787|ref|NP_707297.1| cold shock-like protein CspC [Shigella flexneri 2a str. 301] gi|82543745|ref|YP_407692.1| cold shock-like protein CspC [Shigella boydii Sb227] gi|33301070|sp|Q83RI9|CSPC_SHIFL RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|24051715|gb|AAN43004.1| cold shock protein [Shigella flexneri 2a str. 301] gi|81245156|gb|ABB65864.1| cold shock protein [Shigella boydii Sb227] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ GL L EGQ V ++ +Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGLKTLAEGQNVEFE-IQDGQKG 60 >gi|325529192|gb|EGD06159.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. TJI49] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ + GDD+F H S + G L EGQ V+Y+ Sbjct: 4 GTVKWFNDTKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYE 51 >gi|158317202|ref|YP_001509710.1| cold-shock DNA-binding domain-containing protein [Frankia sp. EAN1pec] gi|158112607|gb|ABW14804.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec] Length = 94 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+N +KG+GFI+ +G G DVF H S++ G +L EGQ V++D Q Sbjct: 27 VSEGTVKWFNAEKGFGFISVDG---GGPDVFAHFSSIVGDGYKSLEEGQRVSFDIEQ--- 80 Query: 62 NGKYSAENLKLVPKS 76 G+ + K+ P S Sbjct: 81 -GQKGPQAAKVQPLS 94 >gi|349561|gb|AAB66357.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 70 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFITP+ ++ DVF+H SA+ + G +L EGQ V++ +++ A G Sbjct: 7 GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF-TIESGAKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|269793598|ref|YP_003313053.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM 10542] gi|269095783|gb|ACZ20219.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM 10542] Length = 62 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 5/65 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +KG+GFI PE + DVF H SA+AS+G +L E Q V +D Q + Sbjct: 1 MKWFNAEKGFGFIAPEDGSA---DVFAHYSAIASSGYRSLDENQKVEFDVTQGPKGPQ-- 55 Query: 67 AENLK 71 AEN++ Sbjct: 56 AENIR 60 >gi|333025177|ref|ZP_08453241.1| putative cold shock protein [Streptomyces sp. Tu6071] gi|332745029|gb|EGJ75470.1| putative cold shock protein [Streptomyces sp. Tu6071] Length = 62 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q VT+D Q Sbjct: 1 MKWFNAEKGFGFIAQEGG---GPDVFVHYSAINANGFRSLEENQAVTFDVTQ 49 >gi|222109154|ref|YP_002551419.1| CspA-like protein [Agrobacterium vitis S4] gi|221738428|gb|ACM39293.1| CspA-like protein [Agrobacterium vitis S4] Length = 99 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 39/73 (53%), Gaps = 5/73 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KGYGFIT S + G DVFLH S V A L L G V YV K Sbjct: 4 GKLKWFDTTKGYGFIT---SDDGGPDVFLHLSKVTEANLPTLQPG--VRLRYVLGRQGNK 58 Query: 65 YSAENLKLVPKSS 77 SA +L L+P + Sbjct: 59 VSAHDLSLMPDEA 71 >gi|119475680|ref|ZP_01616033.1| cold-shock DNA-binding domain protein [marine gamma proteobacterium HTCC2143] gi|119451883|gb|EAW33116.1| cold-shock DNA-binding domain protein [marine gamma proteobacterium HTCC2143] Length = 68 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI ESG DVF H SA+ S+G L EGQ V + Sbjct: 6 GTVKWFNESKGFGFI----EQESGPDVFAHFSAIVSSGFKTLAEGQRVEF 51 >gi|288959216|ref|YP_003449557.1| cold shock protein [Azospirillum sp. B510] gi|288911524|dbj|BAI73013.1| cold shock protein [Azospirillum sp. B510] Length = 186 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 3/53 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++KW+NP KG+GF++PE + D FLH SAV +AG L EG +T D + Sbjct: 23 TVKWFNPTKGFGFVSPE---DGSPDAFLHVSAVQAAGYDALDEGTTITCDLAR 72 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 3/48 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G++KW+N DKG+GFITP + G DVF+H + + +G+ L EG V Sbjct: 123 GTVKWFNADKGFGFITP---STGGKDVFVHVNVLRRSGMQTLQEGDQV 167 >gi|111224718|ref|YP_715512.1| major cold shock protein/transcription antiterminator [Frankia alni ACN14a] gi|111152250|emb|CAJ63981.1| major cold shock protein 7.4, transcription antiterminator of hns, ssDNA-binding property [Frankia alni ACN14a] Length = 63 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 3/53 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +KW+N +KG+GFI+ +G G DVF+H S++ S G +L EGQ V++D Q Sbjct: 1 MKWFNAEKGFGFISVDGG---GGDVFVHFSSIVSEGFKSLDEGQRVSFDIEQG 50 >gi|218548403|ref|YP_002382194.1| cold shock protein-like protein [Escherichia fergusonii ATCC 35469] gi|218355944|emb|CAQ88559.1| cold shock protein homolog [Escherichia fergusonii ATCC 35469] gi|324113824|gb|EGC07799.1| cold shock domain-containing protein CspD [Escherichia fergusonii B253] gi|325496824|gb|EGC94683.1| cold shock protein [Escherichia fergusonii ECD227] Length = 73 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQPVQFDVTQ 54 >gi|218134817|ref|ZP_03463621.1| hypothetical protein BACPEC_02720 [Bacteroides pectinophilus ATCC 43243] gi|217990202|gb|EEC56213.1| hypothetical protein BACPEC_02720 [Bacteroides pectinophilus ATCC 43243] Length = 111 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI S ESG+DVF+H S + G +L EG V +D V N A G Sbjct: 48 KGTVKWFNNQKGYGFI----SDESGNDVFVHYSGLNMEGFKSLDEGAEVEFDVV-NGAKG 102 Query: 64 KYSAENLKL 72 + KL Sbjct: 103 PQATNVTKL 111 >gi|260753178|ref|YP_003226071.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552541|gb|ACV75487.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 303 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K++N KG+GF+ + + G+DVF+H SAV AGL L EGQ +++ V D G+ Sbjct: 138 GVVKFFNSQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGGR 192 Query: 65 YSAENL 70 SA NL Sbjct: 193 VSATNL 198 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AGL +L EG ++++ ++ D GK Sbjct: 237 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGLPSLNEGDRLSFE-LEVDRRGK 292 Query: 65 YSAENL 70 Y+A NL Sbjct: 293 YAAVNL 298 >gi|187251844|ref|YP_001876326.1| cold-shock DNA-binding domain-containing protein [Elusimicrobium minutum Pei191] gi|186972004|gb|ACC98989.1| Cold-shock DNA-binding domain protein [Elusimicrobium minutum Pei191] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G IKW+N KGYGF+TPE + D+F+H + G L EGQ V +D +++ Sbjct: 3 QGKIKWFNDQKGYGFVTPEDGSA---DLFVHYQEIQGEGFKTLAEGQAVEFDVAKSEKGP 59 Query: 64 KYSAENLKLV 73 K A N++ + Sbjct: 60 K--ATNVRKI 67 >gi|330683909|gb|EGG95678.1| cold shock protein CspD [Staphylococcus epidermidis VCU121] Length = 58 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N DKG+GFI +G+DVF+H S +A G +L EGQ V +D ++ Sbjct: 1 MNNGTVKWFNADKGFGFI----ERGNGNDVFVHYSGIAGEGYKSLEEGQNVDFDIIE 53 >gi|319441307|ref|ZP_07990463.1| putative cold shock protein [Corynebacterium variabile DSM 44702] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI P+ + D+F+H SA+ S+G +L E Q V+++ V+ A G Sbjct: 4 GTVKWFNAEKGFGFIAPD---DGSSDIFVHYSAIQSSGFRSLEEDQKVSFE-VEAGAKGP 59 Query: 65 YSAE 68 +A+ Sbjct: 60 AAAD 63 >gi|238757625|ref|ZP_04618809.1| Cold shock-like protein cspE [Yersinia aldovae ATCC 35236] gi|238704130|gb|EEP96663.1| Cold shock-like protein cspE [Yersinia aldovae ATCC 35236] Length = 65 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y +Q+ G Sbjct: 2 GQVKWFNESKGFGFIE---QADGGKDVFVHFSAIATDGFKTLAEGQRVEYT-IQDSPRGP 57 Query: 65 YSAENLKL 72 +A + L Sbjct: 58 AAANVVAL 65 >gi|89096927|ref|ZP_01169818.1| cold shock protein [Bacillus sp. NRRL B-14911] gi|89088307|gb|EAR67417.1| cold shock protein [Bacillus sp. NRRL B-14911] Length = 66 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N +KG+GFI T G DVF+H SA+ G L EGQ V++D Sbjct: 4 GKVKWFNAEKGFGFI----ETSEGQDVFVHFSAIQGEGFKTLDEGQEVSFD 50 >gi|326794422|ref|YP_004312242.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] gi|326545186|gb|ADZ90406.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] Length = 154 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GF+T + GDDVF+H A+ G L EGQ V + YV GK Sbjct: 90 GTVKWFNSSKGFGFLT----LDDGDDVFVHYRAIRGRGRRFLVEGQKVRF-YVTEGEKGK 144 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 145 -QAENVSII 152 >gi|119469734|ref|ZP_01612603.1| Cold shock protein [Alteromonadales bacterium TW-7] gi|119446981|gb|EAW28252.1| Cold shock protein [Alteromonadales bacterium TW-7] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFI ESG DVF H SA++ G L EGQ V + Q + Sbjct: 7 GSVKWFNEAKGFGFI----EQESGPDVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKGPQ 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 --AENI 66 >gi|331699456|ref|YP_004335695.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326954145|gb|AEA27842.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans CB1190] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI +T+ G DVF+H SA+ + G L EG V ++ +G Sbjct: 3 QGTVKWFNSEKGYGFI----ATDGGPDVFVHYSAIQADGFRTLDEGDRVEFETTAG-RDG 57 Query: 64 KYSAENLKLV 73 + AE ++ + Sbjct: 58 RSQAEAVRRI 67 >gi|229085316|ref|ZP_04217558.1| Cold shock protein cspB [Bacillus cereus Rock3-44] gi|228698035|gb|EEL50778.1| Cold shock protein cspB [Bacillus cereus Rock3-44] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V+++ D Sbjct: 1 MTLTGKVKWFNSEKGFGFI----EVEDGNDVFVHFSAITGDGFKSLDEGQEVSFEV--ED 54 Query: 61 ANGKYSAENL 70 N A+N+ Sbjct: 55 GNRGPQAKNV 64 >gi|164688479|ref|ZP_02212507.1| hypothetical protein CLOBAR_02124 [Clostridium bartlettii DSM 16795] gi|164602892|gb|EDQ96357.1| hypothetical protein CLOBAR_02124 [Clostridium bartlettii DSM 16795] Length = 66 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI+ EG DVF+H SA+ G +L EGQ V +D V+ A G Sbjct: 4 GVVKWFNNEKGFGFISVEGE----GDVFVHFSAIQCDGYKSLEEGQNVEFDVVEG-AKGP 58 Query: 65 YSAENLKL 72 +A ++L Sbjct: 59 QAANVVRL 66 >gi|73538959|ref|YP_299326.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72122296|gb|AAZ64482.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KGYGFITP+ + G D+F H S + +G +L EG V +D Q Sbjct: 4 GIVKWFNNEKGYGFITPD---DGGKDLFAHHSEIQGSGFKSLDEGAKVEFDVTQ 54 >gi|120599534|ref|YP_964108.1| cold-shock DNA-binding domain-containing protein [Shewanella sp. W3-18-1] gi|146292469|ref|YP_001182893.1| cold-shock DNA-binding domain-containing protein [Shewanella putrefaciens CN-32] gi|120559627|gb|ABM25554.1| cold-shock DNA-binding protein family [Shewanella sp. W3-18-1] gi|145564159|gb|ABP75094.1| cold-shock DNA-binding protein family [Shewanella putrefaciens CN-32] gi|319425771|gb|ADV53845.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens 200] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFI+P+ G D F+H A+ S G L EGQ V++D Q Sbjct: 6 GVVKWFNEEKGFGFISPD---NGGADAFVHFRAIVSEGFKTLGEGQKVSFDIEQ 56 >gi|328880109|emb|CCA53348.1| cold shock protein [Streptomyces venezuelae ATCC 10712] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S + G LTEG+ VT+D Q + Sbjct: 4 GTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNIQGNGYRELTEGEAVTFDITQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|315651983|ref|ZP_07904985.1| cold shock protein Csp [Eubacterium saburreum DSM 3986] gi|315485812|gb|EFU76192.1| cold shock protein Csp [Eubacterium saburreum DSM 3986] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++RG++KW+N KGYGFI+ EG G+DVF+H S + G L EG V YD + Sbjct: 1 MNRGTVKWFNNQKGYGFISDEG----GNDVFVHFSDLNMDGFKTLDEGNSVEYDLTE 53 >gi|86743144|ref|YP_483544.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3] gi|86570006|gb|ABD13815.1| cold-shock DNA-binding protein family [Frankia sp. CcI3] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI+ +G G DVF+H S++ + G +L EGQ V ++ VQ Sbjct: 3 QGTVKWFNAEKGFGFISVDG---GGPDVFVHYSSIVADGYKSLDEGQSVQFEIVQGQKGP 59 Query: 64 KYSAENLKLV 73 + A+N++ V Sbjct: 60 Q--ADNVQPV 67 >gi|115360542|ref|YP_777679.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria AMMD] gi|115285870|gb|ABI91345.1| cold-shock DNA-binding protein family [Burkholderia ambifaria AMMD] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ + GDD+F H S + G L EGQ V+Y+ Sbjct: 4 GTVKWFNDGKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYE 51 >gi|332306352|ref|YP_004434203.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173681|gb|AEE22935.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 72 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI PE + GDD+F H S + G +L GQ V YD VQ G Sbjct: 4 GKVKWFNNAKGFGFIVPE---DGGDDIFAHYSTIQMEGYRSLKAGQEVKYD-VQQGPKGL 59 Query: 65 YSAENLKL 72 + AEN+ Sbjct: 60 H-AENIDF 66 >gi|329117514|ref|ZP_08246231.1| major cold shock protein CspA [Streptococcus parauberis NCFD 2020] gi|326907919|gb|EGE54833.1| major cold shock protein CspA [Streptococcus parauberis NCFD 2020] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFIT E+G DVF H S + S G +L EGQ V +D Sbjct: 3 QGTVKWFNAEKGFGFITQ----ENGSDVFAHFSEIQSDGYKSLDEGQKVEFD 50 >gi|312962258|ref|ZP_07776750.1| cold-shock protein, DNA-binding [Pseudomonas fluorescens WH6] gi|311283595|gb|EFQ62184.1| cold-shock protein, DNA-binding [Pseudomonas fluorescens WH6] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFIT +G G DVF+H SA+ S G L E Q V ++ Q Sbjct: 4 GTVKWFNAEKGFGFITQDG---GGADVFVHFSAIQSDGFKTLEENQKVEFEIEQ 54 >gi|270261198|ref|ZP_06189471.1| hypothetical protein SOD_a04230 [Serratia odorifera 4Rx13] gi|270044682|gb|EFA17773.1| hypothetical protein SOD_a04230 [Serratia odorifera 4Rx13] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y +Q+ G Sbjct: 6 GQVKWFNESKGFGFIE---QNDGGKDVFVHFSAIATDGFKTLAEGQRVEYS-IQDSPRGP 61 Query: 65 YSAENLKL 72 +A + L Sbjct: 62 AAANVVAL 69 >gi|261212974|ref|ZP_05927258.1| cold shock protein CspA [Vibrio sp. RC341] gi|260838039|gb|EEX64716.1| cold shock protein CspA [Vibrio sp. RC341] Length = 66 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N KG+GF+T + G+DVF+H +++ S G LTEGQ V++ Q Sbjct: 3 GSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLTEGQRVSFTVEQ 53 >gi|15838943|ref|NP_299631.1| cold shock protein [Xylella fastidiosa 9a5c] gi|9107526|gb|AAF85151.1|AE004045_9 cold shock protein [Xylella fastidiosa 9a5c] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW++ KG+GFI+P+ T +VF H S + S G +L EGQ VTYD Q Sbjct: 1 MQSGTVKWFSDQKGFGFISPDDGTP---EVFAHYSGINSKGFRSLHEGQRVTYDVTQ 54 >gi|27377231|ref|NP_768760.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27350374|dbj|BAC47385.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 68 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KGYGFI P+ + DVF+H +V AG +L EG ++++ + ++GK Sbjct: 4 GIVKWFSATKGYGFIKPD---DGEADVFVHIRSVEKAGYTSLAEGARISFER-KTGSSGK 59 Query: 65 YSAENLKL 72 SA+NL++ Sbjct: 60 VSADNLRI 67 >gi|111226121|ref|YP_716915.1| major cold shock protein, ssDNA-binding property [Frankia alni ACN14a] gi|111153653|emb|CAJ65413.1| major cold shock protein, ssDNA-binding property [Frankia alni ACN14a] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI+ +G G DVF+H S++ + G +L EGQ V ++ VQ Sbjct: 3 QGTVKWFNAEKGFGFISVDG---GGPDVFVHYSSIVADGYKSLDEGQSVQFEIVQ 54 >gi|170702637|ref|ZP_02893506.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171319239|ref|ZP_02908355.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|172064865|ref|YP_001815577.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria MC40-6] gi|170132457|gb|EDT00916.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171095541|gb|EDT40505.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|171997107|gb|ACB68024.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MC40-6] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ + GDD+F H S + G L EGQ V+Y+ Sbjct: 4 GTVKWFNDGKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYE 51 >gi|26988254|ref|NP_743679.1| cold shock protein CspA [Pseudomonas putida KT2440] gi|148549408|ref|YP_001269510.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida F1] gi|167032140|ref|YP_001667371.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida GB-1] gi|325278118|ref|ZP_08143630.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] gi|24982997|gb|AAN67143.1|AE016343_3 cold shock protein CspA [Pseudomonas putida KT2440] gi|148513466|gb|ABQ80326.1| cold-shock DNA-binding protein family [Pseudomonas putida F1] gi|166858628|gb|ABY97035.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1] gi|313500255|gb|ADR61621.1| CspA [Pseudomonas putida BIRD-1] gi|324096743|gb|EGB95077.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI EG G DVF+H A+ G L EGQ V Y VQ Sbjct: 7 GNVKWFNDAKGYGFIQREG----GADVFVHYRAIRGEGHRTLVEGQRVEYACVQ 56 >gi|218780562|ref|YP_002431880.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761946|gb|ACL04412.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E G DVF+H SA+ G +L EGQ V + VQ Sbjct: 7 GTVKWFNDKKGFGFI----EREEGGDVFVHYSAIVGNGFRSLAEGQKVEFTVVQ 56 >gi|300715528|ref|YP_003740331.1| Cold shock protein [Erwinia billingiae Eb661] gi|299061364|emb|CAX58473.1| Cold shock protein [Erwinia billingiae Eb661] Length = 70 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI+P T+ DVF+H SA+ + G L EGQ V + ++N G Sbjct: 7 GLVKWFNAEKGFGFISP---TDGSKDVFVHFSAIQNGGFKTLEEGQKVEFS-IENGQKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|320012738|gb|ADW07588.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI +G G +VF H S +A+ GL L EGQ VT+D Q Sbjct: 4 GTVKWFNAAKGFGFIEQDGD---GAEVFAHFSNIAAQGLPELFEGQKVTFDVTQ 54 >gi|197116608|ref|YP_002137035.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|197085968|gb|ACH37239.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] Length = 66 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N KG+GFI E+G+DVF+H SA+ G +L EG VT+D Q Sbjct: 3 KGVVKWFNDSKGFGFI----EQENGEDVFVHFSAIQGDGFKSLAEGDSVTFDVQQ 53 >gi|153954443|ref|YP_001395208.1| hypothetical protein CKL_1818 [Clostridium kluyveri DSM 555] gi|219855034|ref|YP_002472156.1| hypothetical protein CKR_1691 [Clostridium kluyveri NBRC 12016] gi|146347324|gb|EDK33860.1| Hypothetical protein CKL_1818 [Clostridium kluyveri DSM 555] gi|219568758|dbj|BAH06742.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 65 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFIT E G+DVF H S + S G L EGQ V++D + + Sbjct: 3 GTVKWFNENKGFGFITG----EDGNDVFAHFSQINSEGYKTLEEGQKVSFDKTRGQKGPQ 58 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 59 --AENITVL 65 >gi|148975746|ref|ZP_01812577.1| putative Cold shock-like protein [Vibrionales bacterium SWAT-3] gi|145964819|gb|EDK30071.1| putative Cold shock-like protein [Vibrionales bacterium SWAT-3] Length = 70 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI+ + G DVF+H A+ S G L EGQ V+++ V+N G Sbjct: 7 GTVKWFNEEKGFGFISQD---NGGADVFVHFRAIVSEGFKTLKEGQKVSFE-VENGQKGL 62 Query: 65 YSA 67 +A Sbjct: 63 QAA 65 >gi|289450032|ref|YP_003475336.1| cold-shock DNA-binding domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184579|gb|ADC91004.1| cold-shock DNA-binding domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 70 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N KGYGFI + GDD+F+H SA+ G L EGQ VT+D Sbjct: 1 MNTGTVKWFNDTKGYGFIAND---NGGDDLFVHFSAIRIDGFKTLKEGQKVTFD 51 >gi|284046161|ref|YP_003396501.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] gi|283950382|gb|ADB53126.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ +KG+GFITP+ E D+F+H + + S G +L EG V+YD Q D K Sbjct: 4 GTVKWFSDEKGFGFITPD---EGSRDLFVHHTGINSDGYRSLAEGAKVSYDEEQGDKGPK 60 >gi|260599717|ref|YP_003212288.1| RNA chaperone/anti-terminator [Cronobacter turicensis z3032] gi|260218894|emb|CBA34249.1| Cold shock protein cspA [Cronobacter turicensis z3032] Length = 70 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFITP+ ++ DVF+H SA+ G L EGQ V++ V++ A G Sbjct: 7 GLVKWFNAEKGFGFITPDNGSK---DVFVHFSAIQDNGFKTLEEGQKVSFT-VESGAKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|7498486|pir||T20509 hypothetical protein F02E9.2a - Caenorhabditis elegans Length = 211 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 55 GSCKWFNVSKGYGFVIDD---ITGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110 >gi|260774155|ref|ZP_05883070.1| cold shock protein CspE [Vibrio metschnikovii CIP 69.14] gi|260611116|gb|EEX36320.1| cold shock protein CspE [Vibrio metschnikovii CIP 69.14] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ S G L EGQ V + Q + Sbjct: 7 GTVKWFNETKGFGFI----KQENGPDVFAHFSAIQSEGFRTLAEGQKVEFVITQGQKGPQ 62 Query: 65 YSAENLKLV 73 AE++K++ Sbjct: 63 --AESIKVL 69 >gi|229102298|ref|ZP_04233007.1| Cold shock-like protein cspB [Bacillus cereus Rock3-28] gi|228681199|gb|EEL35367.1| Cold shock-like protein cspB [Bacillus cereus Rock3-28] Length = 77 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI +G+ DDVF+H SA+ G L EGQ V++D + + G Sbjct: 14 QGKVKWFNNEKGFGFIEMDGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 68 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 69 PQAANVVKL 77 >gi|119946183|ref|YP_943863.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119864787|gb|ABM04264.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q Sbjct: 5 EQGTVKWFNEAKGFGFI----EQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQ 58 >gi|326794630|ref|YP_004312450.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] gi|326545394|gb|ADZ90614.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] Length = 84 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +HRGS+KW+N KGYGFI + E D+F+H SA+ G L GQ VT+D Sbjct: 1 MHRGSVKWFNNAKGYGFIVSDSFDE---DLFIHYSAINVEGYKTLKAGQSVTFD 51 >gi|153833621|ref|ZP_01986288.1| putative cold-shock' DNA-binding domain [Vibrio harveyi HY01] gi|156977630|ref|YP_001448536.1| hypothetical protein VIBHAR_06418 [Vibrio harveyi ATCC BAA-1116] gi|148870019|gb|EDL68974.1| putative cold-shock' DNA-binding domain [Vibrio harveyi HY01] gi|156529224|gb|ABU74309.1| hypothetical protein VIBHAR_06418 [Vibrio harveyi ATCC BAA-1116] Length = 70 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GF+T + G DVF+H +A+ + G LTEGQ V++ N +GK Sbjct: 7 GSVKWFNETKGFGFLTQD---NGGQDVFVHFNAIVADGFKTLTEGQKVSF----NVEDGK 59 Query: 65 YSAENLKLVP 74 + ++ P Sbjct: 60 KGPQATEVTP 69 >gi|59713168|ref|YP_205944.1| cold shock protein [Vibrio fischeri ES114] gi|197334115|ref|YP_002157348.1| cold-shock' DNA-binding domain, putative [Vibrio fischeri MJ11] gi|59481269|gb|AAW87056.1| cold shock protein [Vibrio fischeri ES114] gi|197315605|gb|ACH65052.1| cold-shock' DNA-binding domain, putative [Vibrio fischeri MJ11] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+A+ G L EGQ VT+ Q Sbjct: 6 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAIATEGFKTLKEGQAVTFTVEQ 56 >gi|291534217|emb|CBL07330.1| cold-shock DNA-binding protein family [Megamonas hypermegale ART12/1] Length = 71 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG- 63 G++KW+N KGYGFIT + + D+F+H SA+ S G L EGQ VT+D + + Sbjct: 4 GTVKWFNSGKGYGFITND---DGSGDLFVHFSAINSEGFKTLEEGQKVTFDTEADSRDAS 60 Query: 64 KYSAENLKLVP 74 K A N+ +V Sbjct: 61 KLRAVNVTVVK 71 >gi|126347669|emb|CAJ89383.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N +KG+GFI +G G DVF H S +A +G LTEG+ VT++ Q Sbjct: 4 GTVKWFNSEKGFGFIEQDGG---GPDVFAHYSEIAGSGYRELTEGEHVTFEIGQGQ 56 >gi|239940492|ref|ZP_04692429.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998] gi|239986973|ref|ZP_04707637.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379] gi|291443921|ref|ZP_06583311.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|291346868|gb|EFE73772.1| cold shock protein [Streptomyces roseosporus NRRL 15998] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S + ++G L EGQ V++D Q G+ Sbjct: 4 GTVKWFNSEKGFGFIEQDG---GGADVFAHYSNINASGFRELQEGQKVSFDVTQ----GQ 56 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 57 KGPQAENIVP 66 >gi|260598404|ref|YP_003210975.1| RNA chaperone/anti-terminator [Cronobacter turicensis z3032] gi|260217581|emb|CBA31827.1| Cold shock protein cspA [Cronobacter turicensis z3032] Length = 70 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP ++ DVF+H SA+ S L EGQ V++ ++N A G Sbjct: 7 GLVKWFNADKGFGFITPNDGSK---DVFVHFSAIQSDNFKTLDEGQQVSF-TIENGAKG 61 >gi|229526567|ref|ZP_04415971.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426] gi|229336725|gb|EEO01743.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426] Length = 72 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N KG+GFITP+ G DVF+H +++AS G+ L E Q V + Q Sbjct: 9 GSVKWFNESKGFGFITPD---SGGSDVFVHFNSIASGGVKTLFEVQKVNFSIEQ 59 >gi|254282468|ref|ZP_04957436.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR51-B] gi|219678671|gb|EED35020.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR51-B] Length = 68 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI EG G DVF+H SA+ G L++GQ V + ANG+ Sbjct: 6 GTVKWFNETKGYGFIEQEG----GPDVFVHFSAIQGDGFKTLSDGQKVEFTV----ANGQ 57 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 58 KGPQAENVVP 67 >gi|21230878|ref|NP_636795.1| major cold shock protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21242217|ref|NP_641799.1| major cold shock protein [Xanthomonas axonopodis pv. citri str. 306] gi|66769123|ref|YP_243885.1| major cold shock protein [Xanthomonas campestris pv. campestris str. 8004] gi|78047078|ref|YP_363253.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|188992271|ref|YP_001904281.1| cold shock protein [Xanthomonas campestris pv. campestris str. B100] gi|289662980|ref|ZP_06484561.1| major cold shock protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670169|ref|ZP_06491244.1| major cold shock protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325914001|ref|ZP_08176357.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] gi|325922910|ref|ZP_08184625.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC 19865] gi|325928751|ref|ZP_08189921.1| cold-shock DNA-binding protein family [Xanthomonas perforans 91-118] gi|21107638|gb|AAM36335.1| major cold shock protein [Xanthomonas axonopodis pv. citri str. 306] gi|21112487|gb|AAM40719.1| major cold shock protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574455|gb|AAY49865.1| major cold shock protein [Xanthomonas campestris pv. campestris str. 8004] gi|78035508|emb|CAJ23154.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|167734031|emb|CAP52237.1| cold shock protein [Xanthomonas campestris pv. campestris] gi|325539770|gb|EGD11410.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] gi|325540919|gb|EGD12491.1| cold-shock DNA-binding protein family [Xanthomonas perforans 91-118] gi|325546600|gb|EGD17739.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC 19865] Length = 71 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI S E+G+DVF+H A+ G +L EGQ V++ VQ Sbjct: 9 GVVKWFNDAKGFGFI----SRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQ 58 >gi|28199264|ref|NP_779578.1| cold shock protein [Xylella fastidiosa Temecula1] gi|71276139|ref|ZP_00652419.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon] gi|71898360|ref|ZP_00680533.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|71902362|ref|ZP_00684335.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|170730633|ref|YP_001776066.1| cold-shock DNA-binding domain-containing protein [Xylella fastidiosa M12] gi|182681990|ref|YP_001830150.1| cold-shock DNA-binding domain-containing protein [Xylella fastidiosa M23] gi|28057370|gb|AAO29227.1| cold shock protein [Xylella fastidiosa Temecula1] gi|71163057|gb|EAO12779.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon] gi|71727903|gb|EAO30135.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|71731883|gb|EAO33941.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|167965426|gb|ACA12436.1| putative cold-shock DNA-binding domain protein [Xylella fastidiosa M12] gi|182632100|gb|ACB92876.1| cold-shock DNA-binding domain protein [Xylella fastidiosa M23] gi|307578255|gb|ADN62224.1| cold shock protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW++ KG+GFI P+ T +VF+H S + S G +L EGQ VTYD Q Sbjct: 1 MQSGTVKWFSDQKGFGFILPDDGTP---EVFVHYSGINSKGFRSLHEGQRVTYDVTQ 54 >gi|311694048|gb|ADP96921.1| cold-shock DNA-binding domain protein [marine bacterium HP15] Length = 199 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI +SGD+VF+H A+ G L +GQLV ++ V+ D Sbjct: 135 GTVKWFNVKKGFGFIV----RDSGDEVFVHFRAIRGRGRRVLRQGQLVRFNVVEAD 186 >gi|300703253|ref|YP_003744855.1| cold shock-like protein cspd (csp-d) [Ralstonia solanacearum CFBP2957] gi|299070916|emb|CBJ42220.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum CFBP2957] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V ++ Q Sbjct: 4 GTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVVFEVTQ 54 >gi|300718875|ref|YP_003743678.1| Cold-shock DNA-binding protein family [Erwinia billingiae Eb661] gi|299064711|emb|CAX61831.1| Cold-shock DNA-binding protein family [Erwinia billingiae Eb661] Length = 70 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+PE ++ DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFNSDKGFGFISPEDGSK---DVFVHFSAIQSNDFKTLDEGQKVEF-TIENGAKG 61 >gi|226304760|ref|YP_002764718.1| cold shock protein [Rhodococcus erythropolis PR4] gi|229492328|ref|ZP_04386135.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|226183875|dbj|BAH31979.1| probable cold shock protein [Rhodococcus erythropolis PR4] gi|229320737|gb|EEN86551.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N +KG+GFI EG G DVF+H S + +G +L EGQ V ++ Q Sbjct: 3 QGSVKWFNGEKGFGFIEQEG---GGPDVFVHYSEIQGSGYKSLDEGQKVEFEIGQGQKGP 59 Query: 64 KYSAENLKLV 73 + A+N++ + Sbjct: 60 Q--AQNVRAI 67 >gi|149911179|ref|ZP_01899804.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] gi|149805780|gb|EDM65777.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] Length = 68 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 4/51 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW+N KG+GFI E+G DVF H SA+AS G L EGQ V + Sbjct: 5 QGTVKWFNEAKGFGFI----EQENGPDVFAHFSAIASEGFKTLVEGQKVEF 51 >gi|26987944|ref|NP_743369.1| cold-shock domain-contain protein [Pseudomonas putida KT2440] gi|24982656|gb|AAN66833.1|AE016312_4 cold-shock domain family protein [Pseudomonas putida KT2440] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + + D Sbjct: 26 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 77 >gi|119775105|ref|YP_927845.1| cold-shock DNA-binding domain-containing protein [Shewanella amazonensis SB2B] gi|119767605|gb|ABM00176.1| cold-shock DNA-binding protein family [Shewanella amazonensis SB2B] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI + E+G DVF+H A+ + G L EGQ V++ Q + Sbjct: 6 GVVKWFNADKGFGFI----AQEAGPDVFVHFRAINTDGFKTLDEGQKVSFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 62 --AENVTVI 68 >gi|229819166|ref|YP_002880692.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM 12333] gi|229565079|gb|ACQ78930.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM 12333] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI PE + DVF H SA+ + G +L E Q V +D Q Sbjct: 4 GTVKWFNAEKGFGFIAPE---DGSADVFAHYSAIVADGFRSLEENQRVEFDVTQ 54 >gi|71726094|gb|AAZ39217.1| cold shock transcription regulator [Janthinobacterium lividum] gi|323530566|gb|ADX95748.1| cold shock-like protein CspD [Janthinobacterium sp. Ant5-2] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFITP+ E G+D+F H SA+ S G +L E Q V+++ Sbjct: 4 GIVKWFNDSKGFGFITPD---EGGEDLFAHFSAIQSNGFKSLQENQRVSFE 51 >gi|54298841|ref|YP_125210.1| hypothetical protein lpp2908 [Legionella pneumophila str. Paris] gi|53752626|emb|CAH14061.1| hypothetical protein lpp2908 [Legionella pneumophila str. Paris] Length = 71 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 5/65 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH-RSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKGYGFI+ + DDVF+H RS V+SAG L EGQ V + V A G Sbjct: 7 GHVKWFNDDKGYGFISRDNGQ---DDVFVHFRSIVSSAGRKTLVEGQRVEF-LVTKGAKG 62 Query: 64 KYSAE 68 + E Sbjct: 63 LQAEE 67 >gi|7498487|pir||T20510 hypothetical protein F02E9.2b - Caenorhabditis elegans Length = 180 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 24 GSCKWFNVSKGYGFVIDD---ITGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 79 >gi|327481503|gb|AEA84813.1| cold-shock DNA-binding protein [Pseudomonas stutzeri DSM 4166] Length = 177 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SGDDVF+H A+ G L EGQ V + + D Sbjct: 111 GTVKWFNTSKGFGFI----SRDSGDDVFVHFRAIRGEGHRILVEGQRVEFTIMMRD 162 >gi|126653234|ref|ZP_01725352.1| cold shock protein [Bacillus sp. B14905] gi|126589985|gb|EAZ84113.1| cold shock protein [Bacillus sp. B14905] Length = 66 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G +KW+N +KGYGFI + G+DVF+H + + G L EGQ V++D V+ Sbjct: 1 MQHGIVKWFNNEKGYGFI----ECDDGEDVFVHFTGIQEEGFRTLEEGQKVSFDVVE 53 >gi|119945819|ref|YP_943499.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119864423|gb|ABM03900.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q Sbjct: 6 QGTVKWFNEAKGFGFI----EQASGPDVFAHFSAIASEGFKTLAEGQKVEFSVSQ 56 >gi|91224056|ref|ZP_01259319.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] gi|269966375|ref|ZP_06180460.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 40B] gi|91190967|gb|EAS77233.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] gi|269828962|gb|EEZ83211.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 40B] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GF++ + G DVF+H +A+ S G LTEGQ V+++ Q GK Sbjct: 6 GSVKWFNETKGFGFLSQD---NGGQDVFVHFNAIVSDGFKTLTEGQKVSFNVEQ----GK 58 Query: 65 YSAENLKLVP 74 + ++ P Sbjct: 59 KGPQATEVTP 68 >gi|77362295|ref|YP_341869.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125] gi|76877206|emb|CAI89423.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFI ESG DVF H SA++ G L EGQ V + Q + Sbjct: 7 GSVKWFNEAKGFGFI----EQESGADVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKGPQ 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 --AENI 66 >gi|325273425|ref|ZP_08139677.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] gi|324101438|gb|EGB99032.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] Length = 86 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGF+ EG DD+F H SA+ G L GQ VT+D +Q Sbjct: 4 GKVKWFNNAKGYGFVNEEGKN---DDLFAHYSAIQMDGYKTLKAGQAVTFDVIQ 54 >gi|148272792|ref|YP_001222353.1| putative cold shock protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170781984|ref|YP_001710316.1| cold shock protein [Clavibacter michiganensis subsp. sepedonicus] gi|147830722|emb|CAN01662.1| putative cold shock protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169156552|emb|CAQ01703.1| cold shock protein [Clavibacter michiganensis subsp. sepedonicus] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI P+ T DVF H SA+A+ G +L E Q V ++ Q + Sbjct: 4 GTVKWFNAEKGFGFIAPDNGTA---DVFAHYSAIATGGYKSLDENQKVEFEVAQGPKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENIR 65 >gi|186474053|ref|YP_001861395.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184196385|gb|ACC74349.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + GDD+F H S V G +L E Q V +D V+ GK Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGDDLFAHFSEVRVNGFKSLQENQRVKFD-VKQGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|71892224|ref|YP_277957.1| cold shock-like protein CspC [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796330|gb|AAZ41081.1| cold shock-like protein [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G +KW+N KG+GFITP ++ DVF+H SA+ G L+EGQ V ++ Sbjct: 5 KGQVKWFNESKGFGFITP---SDGSKDVFVHFSAIQGNGFKTLSEGQSVEFE 53 >gi|53804193|ref|YP_113979.1| cold shock protein [Methylococcus capsulatus str. Bath] gi|53757954|gb|AAU92245.1| cold shock protein [Methylococcus capsulatus str. Bath] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 V +G++KW+N KGYGFI ESG D+F+H ++ G L EGQ V++ VQ Sbjct: 4 VQQGTVKWFNETKGYGFI----QRESGADLFVHFRSILGEGFKTLKEGQRVSFVEVQ 56 >gi|302808614|ref|XP_002986001.1| hypothetical protein SELMODRAFT_123455 [Selaginella moellendorffii] gi|300146149|gb|EFJ12820.1| hypothetical protein SELMODRAFT_123455 [Selaginella moellendorffii] Length = 63 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 38/56 (67%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KG+GFITP+ +E ++F+H+SA+ + G +L EG++V + Q + Sbjct: 11 GKVKWFNVTKGFGFITPDDGSE---ELFVHQSAIFAEGFRSLREGEIVEFSVEQGE 63 >gi|300719018|ref|YP_003743821.1| Cold-shock DNA-binding domain protein [Erwinia billingiae Eb661] gi|299064854|emb|CAX61974.1| Cold-shock DNA-binding domain protein [Erwinia billingiae Eb661] Length = 70 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P+ ++ DVF+H SA+ S L EGQ V + V+N A G Sbjct: 7 GLVKWFNADKGFGFISPQDGSK---DVFVHFSAIQSNDFKTLDEGQTVQFS-VENGAKG 61 >gi|291279814|ref|YP_003496649.1| cold shock protein [Deferribacter desulfuricans SSM1] gi|290754516|dbj|BAI80893.1| cold shock protein [Deferribacter desulfuricans SSM1] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M G++KW+N KGYGFIT + G+DVF+H +A+ G +L EG V +D V+ Sbjct: 1 MSKTGTVKWFNDSKGYGFIT----SSDGNDVFVHFTAIKMDGFKSLKEGDQVQFDIVE 54 >gi|269216140|ref|ZP_06159994.1| cold shock protein B [Slackia exigua ATCC 700122] gi|269130399|gb|EEZ61477.1| cold shock protein B [Slackia exigua ATCC 700122] Length = 79 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++P+KGYGFI S G+D+F+H S + G L EG V ++ V +NGK Sbjct: 16 GTVKWFSPEKGYGFI----SQADGEDLFVHFSEIKMDGYKTLEEGARVQFE-VTTGSNGK 70 Query: 65 YSAENL 70 A N+ Sbjct: 71 LQASNV 76 >gi|238792393|ref|ZP_04636027.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909] gi|238728319|gb|EEQ19839.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909] Length = 72 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y +Q+ G Sbjct: 9 GQVKWFNESKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYT-IQDSPRGP 64 Query: 65 YSAENLKL 72 +A + L Sbjct: 65 AAANVVAL 72 >gi|89093060|ref|ZP_01166011.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp. MED92] gi|89082710|gb|EAR61931.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp. MED92] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M G++KW+N +KG+GFI E+G DVF+H SA+ G L EGQ V + Q Sbjct: 1 MSTTGTVKWFNEEKGFGFI----EQENGPDVFVHFSAIQGDGFKTLAEGQKVEFSVTQ 54 >gi|254253023|ref|ZP_04946341.1| Cold shock protein [Burkholderia dolosa AUO158] gi|124895632|gb|EAY69512.1| Cold shock protein [Burkholderia dolosa AUO158] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ GDD+F H S + G L EGQ V+Y+ Sbjct: 4 GTVKWFNDSKGFGFITPD---NGGDDLFAHFSEIRGDGFKTLAEGQKVSYE 51 >gi|254227848|ref|ZP_04921279.1| conserved domain protein [Vibrio sp. Ex25] gi|262395888|ref|YP_003287741.1| cold shock protein CspA [Vibrio sp. Ex25] gi|151939890|gb|EDN58717.1| conserved domain protein [Vibrio sp. Ex25] gi|262339482|gb|ACY53276.1| cold shock protein CspA [Vibrio sp. Ex25] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GF++ + G DVF+H +A+ S G LTEGQ V+++ Q GK Sbjct: 6 GSVKWFNETKGFGFLSQD---NGGQDVFVHFNAIVSDGFKTLTEGQKVSFNVEQ----GK 58 Query: 65 YSAENLKLVP 74 + ++ P Sbjct: 59 KGPQATEVTP 68 >gi|229096187|ref|ZP_04227160.1| Cold shock-like protein cspB [Bacillus cereus Rock3-29] gi|229115142|ref|ZP_04244552.1| Cold shock-like protein cspB [Bacillus cereus Rock1-3] gi|228668282|gb|EEL23714.1| Cold shock-like protein cspB [Bacillus cereus Rock1-3] gi|228687147|gb|EEL41052.1| Cold shock-like protein cspB [Bacillus cereus Rock3-29] Length = 65 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI +G+ DDVF+H SA+ G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIEMDGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|229178110|ref|ZP_04305481.1| Cold shock-like protein cspB [Bacillus cereus 172560W] gi|228605240|gb|EEK62690.1| Cold shock-like protein cspB [Bacillus cereus 172560W] Length = 65 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG+ DDVF+H SA+ G L +GQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIEMEGA----DDVFVHFSAIQGDGYKALEDGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|170696311|ref|ZP_02887442.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] gi|170138792|gb|EDT06989.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] Length = 67 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G+D+F H S + S G +L E Q V+++ V+ GK Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRSEGFKSLQENQKVSFE-VKQGPKGK 59 Query: 65 YSAE 68 +A+ Sbjct: 60 QAAD 63 >gi|315659813|ref|ZP_07912672.1| cold-shock protein [Staphylococcus lugdunensis M23590] gi|315495101|gb|EFU83437.1| cold-shock protein [Staphylococcus lugdunensis M23590] Length = 82 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N +KG+GFI E G+DVF+H S +A G L EGQ V +D + Sbjct: 17 MNNGTVKWFNAEKGFGFI----EREDGNDVFVHFSGIAGEGYKTLEEGQKVEFDITE 69 >gi|120555467|ref|YP_959818.1| cold-shock DNA-binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120325316|gb|ABM19631.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei VT8] Length = 179 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI +SGD++F+H A+ G L +GQLV ++ V+ D Sbjct: 115 GTVKWFNVKKGFGFIV----RDSGDEIFVHFRAIRGRGRRVLRQGQLVRFNVVEAD 166 >gi|304391865|ref|ZP_07373807.1| probable cold shock protein y4ch [Ahrensia sp. R2A130] gi|303296094|gb|EFL90452.1| probable cold shock protein y4ch [Ahrensia sp. R2A130] Length = 69 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K+YN KG+GFI P+ + G DVF+H +A+ GL L+EGQ V+++ + +GK Sbjct: 4 GTVKFYNDTKGFGFIQPD---DGGKDVFVHATALERNGLTGLSEGQKVSFETDMDPRSGK 60 Query: 65 YSAENLK 71 + ++ Sbjct: 61 PAVSKIE 67 >gi|222056887|ref|YP_002539249.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] gi|221566176|gb|ACM22148.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] Length = 66 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 5/63 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI ++G+DVF+H SA+ G +LTEG+ VT++ VQ G Sbjct: 4 GTVKWFNDSKGFGFI----EQDNGEDVFVHFSAIMGDGFKSLTEGEAVTFE-VQKGPKGL 58 Query: 65 YSA 67 +A Sbjct: 59 QAA 61 >gi|296130972|ref|YP_003638222.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] gi|296022787|gb|ADG76023.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] Length = 67 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N +KG+GFI PE + G DVF+H SA+ + G +L E Q V +D Sbjct: 4 GIVKWFNAEKGFGFIAPE---DGGPDVFVHYSAIQTQGYRSLEENQRVQFD 51 >gi|126666188|ref|ZP_01737168.1| Cold-shock DNA-binding protein [Marinobacter sp. ELB17] gi|126629510|gb|EBA00128.1| Cold-shock DNA-binding protein [Marinobacter sp. ELB17] Length = 196 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +SGD++F+H A+ +G L +GQLV + + DA+ Sbjct: 132 GTVKWFNVKKGFGFIV----RDSGDEIFVHFRAIRGSGRRVLRQGQLVRFSVI--DADKG 185 Query: 65 YSAENLKLV 73 A+N+ ++ Sbjct: 186 LQADNVSIL 194 >gi|146306295|ref|YP_001186760.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina ymp] gi|145574496|gb|ABP84028.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp] Length = 205 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SG+D+F+H A+ G L EGQ V + +Q D Sbjct: 138 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRVLIEGQRVEFSVMQRD 189 >gi|254249432|ref|ZP_04942752.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184] gi|124875933|gb|EAY65923.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184] Length = 67 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N +KG+GFITP+ GDD+F H S + G L EGQ V+Y+ Sbjct: 4 GTVKWFNDNKGFGFITPD---SGGDDLFAHFSEIRGDGFKMLAEGQKVSYE 51 >gi|269797859|ref|YP_003311759.1| cold-shock DNA-binding domain protein [Veillonella parvula DSM 2008] gi|282848848|ref|ZP_06258238.1| cold-shock DNA-binding domain protein [Veillonella parvula ATCC 17745] gi|294791752|ref|ZP_06756900.1| conserved domain protein [Veillonella sp. 6_1_27] gi|294793613|ref|ZP_06758750.1| conserved domain protein [Veillonella sp. 3_1_44] gi|269094488|gb|ACZ24479.1| cold-shock DNA-binding domain protein [Veillonella parvula DSM 2008] gi|282581353|gb|EFB86746.1| cold-shock DNA-binding domain protein [Veillonella parvula ATCC 17745] gi|294455183|gb|EFG23555.1| conserved domain protein [Veillonella sp. 3_1_44] gi|294456982|gb|EFG25344.1| conserved domain protein [Veillonella sp. 6_1_27] Length = 65 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW++ +KGYGFI E G DVF+H SA+ G +LTEGQ V ++ V Sbjct: 3 GKVKWFSAEKGYGFI----EREDGSDVFVHYSAIQDEGFKSLTEGQNVEFEIV 51 >gi|116781927|gb|ABK22299.1| unknown [Picea sitchensis] gi|148909032|gb|ABR17619.1| unknown [Picea sitchensis] gi|224285091|gb|ACN40273.1| unknown [Picea sitchensis] Length = 205 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KGYGFITP+ +E D+F+H++++ S G +L EG+ V Y V+++ G+ Sbjct: 8 GKVKWFDSTKGYGFITPDDGSE---DLFVHQTSIHSNGFRSLAEGEAVEYT-VEHENGGR 63 Query: 65 YSA 67 A Sbjct: 64 TKA 66 >gi|76577745|gb|ABA54143.1| putative glycine-rich protein [Picea glauca] Length = 156 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KGYGFITP+ +E D+F+H++++ S G +L EG+ V Y V+++ G+ Sbjct: 8 GKVKWFDSTKGYGFITPDDGSE---DLFVHQTSIHSNGFRSLAEGEAVEYT-VEHENGGR 63 Query: 65 YSA 67 A Sbjct: 64 TKA 66 >gi|255318974|ref|ZP_05360199.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] gi|262378290|ref|ZP_06071447.1| cold shock domain-containing protein CspD [Acinetobacter radioresistens SH164] gi|255303991|gb|EET83183.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] gi|262299575|gb|EEY87487.1| cold shock domain-containing protein CspD [Acinetobacter radioresistens SH164] Length = 69 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V +G++KW+N KG+GFI ESG DVF H S + + G L EGQ V + V D Sbjct: 4 VVKGTVKWFNETKGFGFI----QQESGPDVFAHYSEITNQGFKTLYEGQQVQFTVV--DG 57 Query: 62 NGKYSAENLKLV 73 A N+ LV Sbjct: 58 KKGPQASNITLV 69 >gi|300022389|ref|YP_003755000.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524210|gb|ADJ22679.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 71 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K+YN KGYGFI P+ G+DVF+H +AV +G+ L EG ++++ + D Sbjct: 1 MRQTGTVKFYNSQKGYGFIKPD---TGGNDVFVHVTAVERSGIGELNEGMRISFE-TEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 KRGK 60 >gi|228991370|ref|ZP_04151325.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] gi|228997469|ref|ZP_04157086.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|229008676|ref|ZP_04166076.1| Cold shock protein cspB [Bacillus mycoides Rock1-4] gi|228752529|gb|EEM02157.1| Cold shock protein cspB [Bacillus mycoides Rock1-4] gi|228762265|gb|EEM11194.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|228768300|gb|EEM16908.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] Length = 67 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M G +KW+N +KG+GFI E G DVF+H SA+ G +L EGQ V+++ Sbjct: 1 MTLTGKVKWFNSEKGFGFI----EVEDGSDVFVHFSAITGEGFKSLDEGQEVSFE 51 >gi|104783210|ref|YP_609708.1| cold shock protein CspE-like [Pseudomonas entomophila L48] gi|95112197|emb|CAK16924.1| putative cold shock protein CspE-like [Pseudomonas entomophila L48] Length = 69 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI EG G DVF+H A+ G L EGQ V Y VQ Sbjct: 7 GNVKWFNDAKGYGFIQREG----GADVFVHYRAIRGEGHRTLVEGQQVEYALVQ 56 >gi|238789632|ref|ZP_04633415.1| Cold shock-like protein cspD [Yersinia frederiksenii ATCC 33641] gi|238722185|gb|EEQ13842.1| Cold shock-like protein cspD [Yersinia frederiksenii ATCC 33641] Length = 85 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQ 54 >gi|253581856|ref|ZP_04859080.1| cold shock protein CspC [Fusobacterium varium ATCC 27725] gi|251836205|gb|EES64742.1| cold shock protein CspC [Fusobacterium varium ATCC 27725] Length = 65 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFIT E G D+F H S + G L E + VTYD ++ Sbjct: 2 KGTVKWFNQEKGFGFITG----EDGKDIFAHFSQIQKDGFKTLNENEEVTYDVIE 52 >gi|256822338|ref|YP_003146301.1| cold-shock DNA-binding domain-containing protein [Kangiella koreensis DSM 16069] gi|256795877|gb|ACV26533.1| cold-shock DNA-binding domain protein [Kangiella koreensis DSM 16069] Length = 68 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E G+DVF+H A+ G L EGQ V +D Q Sbjct: 6 GTVKWFNESKGFGFI----EQEQGEDVFVHFRAIQGDGFKTLAEGQRVEFDIEQ 55 >gi|294787952|ref|ZP_06753196.1| putative cold-shock protein [Simonsiella muelleri ATCC 29453] gi|294484245|gb|EFG31928.1| putative cold-shock protein [Simonsiella muelleri ATCC 29453] Length = 67 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ Sbjct: 4 GIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFE 51 >gi|238794631|ref|ZP_04638237.1| Cold shock-like protein cspB [Yersinia intermedia ATCC 29909] gi|238726020|gb|EEQ17568.1| Cold shock-like protein cspB [Yersinia intermedia ATCC 29909] Length = 66 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 3 GLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IENGAKGP 58 Query: 65 YSAENLKL 72 +A + L Sbjct: 59 AAANVIAL 66 >gi|238749794|ref|ZP_04611299.1| Cold shock-like protein cspD [Yersinia rohdei ATCC 43380] gi|238712449|gb|EEQ04662.1| Cold shock-like protein cspD [Yersinia rohdei ATCC 43380] Length = 85 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQ 54 >gi|207723599|ref|YP_002253998.1| cold shock-like protein cspd [Ralstonia solanacearum MolK2] gi|206588801|emb|CAQ35764.1| cold shock-like protein cspd [Ralstonia solanacearum MolK2] Length = 67 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V ++ Q Sbjct: 4 GTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMDGFKTLKEGQRVVFEVTQ 54 >gi|330502213|ref|YP_004379082.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] gi|328916499|gb|AEB57330.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] Length = 204 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SG+D+F+H A+ G L EGQ V + +Q D Sbjct: 137 GTVKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRVLIEGQRVEFSVMQRD 188 >gi|239832396|ref|ZP_04680725.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301] gi|239824663|gb|EEQ96231.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301] Length = 96 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N +KG+GFI P+ + G D+F+H SAV ++GL L + Q V+Y+ + D Sbjct: 26 MAQTGQVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLTGLADNQKVSYE-TEPD 81 Query: 61 ANGK 64 GK Sbjct: 82 RRGK 85 >gi|145347619|ref|XP_001418260.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578489|gb|ABO96553.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 106 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+N KG+GFI P +E ++F+H++ ++ AG ++ EG+ V YD D Sbjct: 6 RGKVKWFNATKGFGFIIPHDGSE---EIFVHQTGISCAGFRSVWEGEEVEYDVDDTD 59 >gi|110834773|ref|YP_693632.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2] gi|110647884|emb|CAL17360.1| cold-shock domain family protein [Alcanivorax borkumensis SK2] Length = 76 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 4/58 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+NP+KG+GFI T+SG+++F+H AV + G +L G V +D +D Sbjct: 11 QRGEVKWFNPNKGFGFIL----TDSGEELFVHFKAVQNGGRRSLRTGTKVRFDTRMSD 64 >gi|229592309|ref|YP_002874428.1| cold shock protein cspc [Pseudomonas fluorescens SBW25] gi|229364175|emb|CAY51835.1| cold shock protein cspc [Pseudomonas fluorescens SBW25] Length = 73 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 7 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 61 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 62 QAEDVIAALPR 72 >gi|188534694|ref|YP_001908491.1| Cold shock protein [Erwinia tasmaniensis Et1/99] gi|259909319|ref|YP_002649675.1| Cold shock protein [Erwinia pyrifoliae Ep1/96] gi|188029736|emb|CAO97615.1| Cold shock protein [Erwinia tasmaniensis Et1/99] gi|224964941|emb|CAX56469.1| Cold shock protein [Erwinia pyrifoliae Ep1/96] gi|283479388|emb|CAY75304.1| Cold shock-like protein cspG (CPS-G) [Erwinia pyrifoliae DSM 12163] gi|310766775|gb|ADP11725.1| Cold shock protein [Erwinia sp. Ejp617] Length = 70 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI+P T+ DVF+H SA+ + G L EGQ V + ++N G Sbjct: 7 GLVKWFNAEKGFGFISP---TDGSKDVFVHFSAIQNGGFKTLEEGQKVEFT-IENGQKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|149374445|ref|ZP_01892219.1| Cold shock protein [Marinobacter algicola DG893] gi|149361148|gb|EDM49598.1| Cold shock protein [Marinobacter algicola DG893] Length = 193 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 4/58 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI +SGD+VF+H A+ G L +GQLV + V+ D Sbjct: 127 EEGTVKWFNVKKGFGFIV----RDSGDEVFVHFRAIRGRGRRVLRQGQLVRFSVVEAD 180 >gi|71278873|ref|YP_267468.1| cold shock DNA-binding domain-containing protein [Colwellia psychrerythraea 34H] gi|71144613|gb|AAZ25086.1| cold-shock DNA-binding domain family protein [Colwellia psychrerythraea 34H] Length = 68 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58 +G +KW+N DKG+GFITPE ++ D+F+H S + S G + L +GQ V Y+ Q Sbjct: 3 KGIVKWFNSDKGFGFITPEDGSK---DLFVHHSEIQSGGEYATLADGQTVEYEVGQ 55 >gi|238789312|ref|ZP_04633099.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641] gi|238722644|gb|EEQ14297.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641] Length = 84 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y +Q+ G Sbjct: 21 GQVKWFNEAKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYT-IQDSPRGP 76 Query: 65 YSAENLKL 72 +A + L Sbjct: 77 AAANVIAL 84 >gi|297191503|ref|ZP_06908901.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|197722057|gb|EDY65965.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 4 GVVKWFNAEKGFGFIEQDGG---GPDVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|123441828|ref|YP_001005812.1| cold shock-like protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088789|emb|CAL11595.1| cold shock-like protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 85 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQ 54 >gi|308270250|emb|CBX26862.1| Cold shock-like protein cspLA [uncultured Desulfobacterium sp.] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E+G DVF+H SA+ + G +L+EG VT++ Q Sbjct: 4 GTVKWFNDQKGFGFI----EQENGPDVFVHHSAINATGFKSLSEGSHVTFEIEQ 53 >gi|281336080|gb|ADA62629.1| Cold shock protein CspC [Staphylococcus epidermidis] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW++ DKG+GFI ++G+DVF+H S +A G +L EGQ V +D V+ Sbjct: 1 MNNGTVKWFHADKGFGFI----ERDNGNDVFVHYSVIAGEGYKSLEEGQNVDFDIVE 53 >gi|262200587|ref|YP_003271795.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] gi|262083934|gb|ACY19902.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P+ E DDVF+H S + +G L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIAPD---EGSDDVFVHYSEIQGSGFRTLEENQRVEFEVGQ 54 >gi|149377667|ref|ZP_01895403.1| cold-shock DNA-binding domain family protein [Marinobacter algicola DG893] gi|149358020|gb|EDM46506.1| cold-shock DNA-binding domain family protein [Marinobacter algicola DG893] Length = 68 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFIT EG G DVF+H SA+ +G L EGQ V + Q + Sbjct: 6 GTVKFFNEAKGFGFITREG----GPDVFVHYSAIQGSGFKTLAEGQQVEFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ + Sbjct: 62 --AENVTAI 68 >gi|146309833|ref|YP_001174907.1| major cold shock protein [Enterobacter sp. 638] gi|261341820|ref|ZP_05969678.1| hypothetical protein ENTCAN_08306 [Enterobacter cancerogenus ATCC 35316] gi|145316709|gb|ABP58856.1| cold-shock DNA-binding protein family [Enterobacter sp. 638] gi|288316195|gb|EFC55133.1| putative cold shock protein [Enterobacter cancerogenus ATCC 35316] Length = 70 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFITP+ ++ DVF+H SA+ + G +L EGQ V++ +++ A G Sbjct: 7 GLVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNEGYKSLDEGQKVSFT-IESGAKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 AAGNVVSL 70 >gi|15616931|ref|NP_240144.1| cold shock-like protein CspC [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681685|ref|YP_002468071.1| cold shock-like protein CspC [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682240|ref|YP_002468624.1| cold shock-like protein CspC [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471376|ref|ZP_05635375.1| cold shock-like protein CspC [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11131708|sp|P57407|CSPC_BUCAI RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|25296148|pir||F84967 cold shock-like protein cspC [imported] - Buchnera sp. (strain APS) gi|10038996|dbj|BAB13030.1| cold shock-like protein cspC [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621973|gb|ACL30129.1| cold shock-like protein CspC [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624528|gb|ACL30683.1| cold shock-like protein CspC [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086059|gb|ADP66141.1| cold shock-like protein CspC [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086633|gb|ADP66714.1| cold shock-like protein CspC [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087216|gb|ADP67296.1| cold shock-like protein CspC [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087737|gb|ADP67816.1| cold shock-like protein CspC [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP ++ DVF+H S++ G LTEGQ V ++ +Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---SDGSKDVFVHFSSIQGNGFKTLTEGQNVEFE-IQDGQKG 60 >gi|257468871|ref|ZP_05632965.1| cold shock protein [Fusobacterium ulcerans ATCC 49185] gi|317063120|ref|ZP_07927605.1| cold shock protein [Fusobacterium ulcerans ATCC 49185] gi|313688796|gb|EFS25631.1| cold shock protein [Fusobacterium ulcerans ATCC 49185] Length = 65 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFIT E G D+F H S + G L E + VTYD ++ Sbjct: 2 KGTVKWFNQEKGFGFITG----EDGKDIFAHFSQIQKDGFKTLNENEEVTYDVIE 52 >gi|154253414|ref|YP_001414238.1| cold-shock DNA-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154157364|gb|ABS64581.1| putative cold-shock DNA-binding domain protein [Parvibaculum lavamentivorans DS-1] Length = 199 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G +KW++ KGYGFI PE GDDV +H S + AGL L EG VT + V+ Sbjct: 40 GVVKWFDAVKGYGFIIPE---NGGDDVLVHLSCLKQAGLEALDEGTTVTCEAVRR 91 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 +KW+N +GYGF+T E D+F+H + G+ +L GQ + + Sbjct: 138 VKWFNRARGYGFVT---RGEGTPDIFIHMETLRRYGIRDLLPGQQINVRF 184 >gi|238792422|ref|ZP_04636056.1| Cold shock-like protein cspD [Yersinia intermedia ATCC 29909] gi|238728348|gb|EEQ19868.1| Cold shock-like protein cspD [Yersinia intermedia ATCC 29909] Length = 85 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQ 54 >gi|300787569|ref|YP_003767860.1| cold shock protein CspA [Amycolatopsis mediterranei U32] gi|299797083|gb|ADJ47458.1| cold shock protein CspA [Amycolatopsis mediterranei U32] Length = 315 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 5/56 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G+I WY P KGYGF +P+G G D+F+H SA+ + G+ +TEGQ V + V+ + Sbjct: 81 GTINWYEPGKGYGFASPDG---GGADIFVHSSAIVTGGV--VTEGQRVAFLIVEGE 131 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60 +G+++W++ ++G+GF+ PE + DVF+H S V G L EGQ V ++ +ND Sbjct: 3 QGTVRWFDAERGFGFLAPE---DDSPDVFVHASEIVGDGGAKVLREGQAVVFEVGEND 57 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ WY+ DKG+GFI P+ DVF+H A+A GL L EG V Y+ D Sbjct: 161 TVAWYDEDKGFGFINPD---SGAGDVFVHARALAE-GLTWLAEGDRVAYEVASGD 211 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G + Y+ D+G+GFITP+ GDD+F H S + G L +G V Y Q+D Sbjct: 254 GVVARYDGDRGFGFITPDA---GGDDLFAHASVI--MGSEPLQKGDRVRYAVRQSD 304 >gi|297560234|ref|YP_003679208.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844682|gb|ADH66702.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI +G G DVF H SA+ + G L EGQ V +D Q A G Sbjct: 4 GKVKWFNGEKGFGFIEQDG---GGPDVFAHYSAIQANGYRELAEGQNVEFDVTQG-AKG- 58 Query: 65 YSAENLKLV 73 A+N+ L+ Sbjct: 59 LQADNITLI 67 >gi|261345563|ref|ZP_05973207.1| conserved domain protein [Providencia rustigianii DSM 4541] gi|282566611|gb|EFB72146.1| conserved domain protein [Providencia rustigianii DSM 4541] Length = 70 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFITP ++ DVF+H SA+ S L EGQ V++ V++ A G Sbjct: 7 GLVKWFNDDKGFGFITPADGSK---DVFVHFSAIQSDDFKTLHEGQKVSFS-VESGAKGP 62 Query: 65 YSAENLKL 72 +A + L Sbjct: 63 AAANVVAL 70 >gi|153874948|ref|ZP_02002962.1| Cold shock protein [Beggiatoa sp. PS] gi|152068588|gb|EDN67038.1| Cold shock protein [Beggiatoa sp. PS] Length = 71 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E E DVF+H +++ G +L EGQ VT D Q Sbjct: 8 GTVKWFNDSKGFGFIEQE---EGQPDVFVHHTSIQGEGFKSLQEGQKVTMDVTQGQKG-- 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 LQAENV 68 >gi|119947299|ref|YP_944979.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119865903|gb|ABM05380.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q Sbjct: 6 QGTVKWFNEAKGFGFI----EQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQ 56 >gi|73542439|ref|YP_296959.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72119852|gb|AAZ62115.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI P+ E +++F H SA+ AG L EGQ V+++ VQ Sbjct: 4 GIVKWFNDAKGFGFIKPD---EGEEELFAHFSAIQMAGFKTLKEGQRVSFEVVQ 54 >gi|148547058|ref|YP_001267160.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida F1] gi|148511116|gb|ABQ77976.1| cold-shock DNA-binding protein family [Pseudomonas putida F1] Length = 88 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI EG + DD+F H SA+ G L GQ V +D VQ Sbjct: 4 GKVKWFNNAKGYGFINEEGKS---DDLFAHYSAIRMDGYKTLKAGQAVVFDIVQ 54 >gi|310778745|ref|YP_003967078.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] gi|309748068|gb|ADO82730.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFIT +E G DVF H S + G +L EG+ VT++ + + Sbjct: 4 GTVKWFNAEKGFGFIT----SEDGTDVFAHFSEIQKDGFKSLEEGEQVTFEITKGQKGPQ 59 Query: 65 YSAENLKLV 73 A N+K V Sbjct: 60 --ASNIKTV 66 >gi|302131878|ref|ZP_07257868.1| cold shock protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 47 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 4/45 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EG Sbjct: 7 GTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEG 47 >gi|293402171|ref|ZP_06646309.1| cold shock protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304278|gb|EFE45529.1| cold shock protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N DKG+GFIT ++ G+D+F+H + + G L EG V++D ND Sbjct: 4 GKVKWFNADKGFGFIT----SDEGNDIFVHYTEIQGNGFRTLEEGAKVSFDIKTND 55 >gi|269468409|gb|EEZ80074.1| cold shock protein [uncultured SUP05 cluster bacterium] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW++ KG+GFI ESGDDVF+H A+ G +L EGQ V +D +++ Sbjct: 1 MSTTGKVKWFDAKKGFGFI----EQESGDDVFVHFRAIQGDGYKSLEEGQEVVFD-LEDG 55 Query: 61 ANGKYSA 67 A G +A Sbjct: 56 AKGPQAA 62 >gi|256391325|ref|YP_003112889.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256357551|gb|ACU71048.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFI +G G DVF+H SA+ +G NL E Q V ++ Q Sbjct: 4 GTVKWFNGEKGYGFIAQDG---GGPDVFVHFSAIEGSGYRNLEENQPVEFEITQ 54 >gi|145294439|ref|YP_001137260.1| hypothetical protein cgR_0394 [Corynebacterium glutamicum R] gi|140844359|dbj|BAF53358.1| hypothetical protein [Corynebacterium glutamicum R] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+NP+KG+GFI P ++ DVF+H S + G L E QLV ++ Sbjct: 3 QGTVKWFNPEKGFGFIAP---SDGSADVFVHYSEIQGNGFRTLEENQLVEFE 51 >gi|104783080|ref|YP_609578.1| cold shock protein [Pseudomonas entomophila L48] gi|95112067|emb|CAK16794.1| putative cold shock protein [Pseudomonas entomophila L48] Length = 196 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + + D Sbjct: 131 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMHRD 182 >gi|25026862|ref|NP_736916.1| putative cold shock protein [Corynebacterium efficiens YS-314] gi|259506076|ref|ZP_05748978.1| cold shock protein [Corynebacterium efficiens YS-314] gi|23492142|dbj|BAC17116.1| putative cold shock protein [Corynebacterium efficiens YS-314] gi|259166364|gb|EEW50918.1| cold shock protein [Corynebacterium efficiens YS-314] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+NP+KG+GFI P ++ DVF+H S + G L E QLV ++ Sbjct: 3 QGTVKWFNPEKGFGFIAP---SDGSADVFVHYSEIEGNGFRTLEENQLVEFE 51 >gi|329296326|ref|ZP_08253662.1| Cold shock-like protein cspC [Plautia stali symbiont] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLVEGQRVEFE-IQDGQKG 60 >gi|311897073|dbj|BAJ29481.1| putative cold shock protein [Kitasatospora setae KM-6054] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S + ++G L EGQ V +D Q + Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNINASGFRELLEGQKVEFDVTQGQKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENIR 65 >gi|94968551|ref|YP_590599.1| cold-shock DNA-binding protein family protein [Candidatus Koribacter versatilis Ellin345] gi|94550601|gb|ABF40525.1| cold-shock DNA-binding protein family [Candidatus Koribacter versatilis Ellin345] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KGYGFI E G DVF+H SA++S G +L EG V ++ V+ Sbjct: 2 KGTVKWFNNAKGYGFI----GREEGPDVFVHYSAISSEGYKSLAEGDAVEFEIVE 52 >gi|123444003|ref|YP_001007973.1| major cold shock protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163163|ref|YP_004299740.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|1778828|gb|AAB40924.1| major cold shock protein CSPA2 [Yersinia enterocolitica] gi|122090964|emb|CAL13846.1| major cold shock protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318603953|emb|CBY25451.1| cold shock protein CspG [Yersinia enterocolitica subsp. palearctica Y11] gi|325667393|gb|ADZ44037.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862836|emb|CBX72977.1| cold shock-like protein cspB [Yersinia enterocolitica W22703] Length = 70 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFITP + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IENGAKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 SAVNVIAL 70 >gi|125974357|ref|YP_001038267.1| cold-shock DNA-binding protein family protein [Clostridium thermocellum ATCC 27405] gi|256005564|ref|ZP_05430524.1| cold-shock DNA-binding domain protein [Clostridium thermocellum DSM 2360] gi|281418904|ref|ZP_06249922.1| cold-shock DNA-binding domain protein [Clostridium thermocellum JW20] gi|125714582|gb|ABN53074.1| cold-shock DNA-binding protein family [Clostridium thermocellum ATCC 27405] gi|255990472|gb|EEU00594.1| cold-shock DNA-binding domain protein [Clostridium thermocellum DSM 2360] gi|281407361|gb|EFB37621.1| cold-shock DNA-binding domain protein [Clostridium thermocellum JW20] gi|316941515|gb|ADU75549.1| cold-shock DNA-binding domain protein [Clostridium thermocellum DSM 1313] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + RG +KW+N +KG+GFI EG G DVF+H SA+ G L EG V ++ V+ Sbjct: 1 MERGRVKWFNAEKGFGFIEREG----GKDVFVHFSAINMDGYKTLEEGAEVEFEVVE 53 >gi|255020707|ref|ZP_05292768.1| cold-shock protein CspE [Acidithiobacillus caldus ATCC 51756] gi|254969861|gb|EET27362.1| cold-shock protein CspE [Acidithiobacillus caldus ATCC 51756] Length = 62 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KW+N KG+GFITPE E DVF+H SA+ G L EG+ V+++ + Sbjct: 1 MKWFNDSKGFGFITPEDGKE---DVFVHHSAIEGTGFKTLAEGERVSFEVTR 49 >gi|152975554|ref|YP_001375071.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024306|gb|ABS22076.1| putative cold-shock DNA-binding domain protein [Bacillus cytotoxicus NVH 391-98] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ Sbjct: 1 MTLTGKVKWFNSEKGFGFI----EVEDGNDVFVHFSAITGEGFKTLDEGQEVNFE 51 >gi|313498101|gb|ADR59467.1| Cold-shock DNA-binding domain-containing protein [Pseudomonas putida BIRD-1] Length = 88 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI EG + DD+F H SA+ G L GQ V +D VQ Sbjct: 4 GKVKWFNNAKGYGFINEEGKS---DDLFAHYSAIRMDGYKTLKAGQAVIFDIVQ 54 >gi|294635687|ref|ZP_06714158.1| conserved domain protein [Edwardsiella tarda ATCC 23685] gi|291090958|gb|EFE23519.1| conserved domain protein [Edwardsiella tarda ATCC 23685] Length = 71 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + V+N G Sbjct: 7 GSVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNEFRTLDEGQKVEFS-VENSPKG 61 >gi|160894675|ref|ZP_02075450.1| hypothetical protein CLOL250_02226 [Clostridium sp. L2-50] gi|156863609|gb|EDO57040.1| hypothetical protein CLOL250_02226 [Clostridium sp. L2-50] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KGYGFI S E+GDD+F+H SA+ +G L EG V ++ ++ + Sbjct: 4 GTVKWFNAKKGYGFI----SDENGDDIFVHFSALNMSGFKVLEEGDKVEFEVIEGE 55 >gi|119944064|ref|YP_941744.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119862668|gb|ABM02145.1| cold shock protein E (CspE) [Psychromonas ingrahamii 37] Length = 68 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GFI SG DVF H SA++S G L EGQ V + Q Sbjct: 5 QGTVKWFNESKGFGFI----EQASGPDVFAHFSAISSEGFKTLAEGQKVEFTITQ 55 >gi|17986781|ref|NP_539415.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M] gi|148560167|ref|YP_001259392.1| cold-shock family protein [Brucella ovis ATCC 25840] gi|225627956|ref|ZP_03785992.1| cold shock protein CSPA [Brucella ceti str. Cudo] gi|237815906|ref|ZP_04594903.1| cold shock protein CSPA [Brucella abortus str. 2308 A] gi|297248787|ref|ZP_06932505.1| cold-shock family protein [Brucella abortus bv. 5 str. B3196] gi|306843139|ref|ZP_07475759.1| cold shock protein [Brucella sp. BO2] gi|17982411|gb|AAL51679.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M] gi|148371424|gb|ABQ61403.1| cold-shock family protein [Brucella ovis ATCC 25840] gi|225617119|gb|EEH14165.1| cold shock protein CSPA [Brucella ceti str. Cudo] gi|237789204|gb|EEP63415.1| cold shock protein CSPA [Brucella abortus str. 2308 A] gi|297175956|gb|EFH35303.1| cold-shock family protein [Brucella abortus bv. 5 str. B3196] gi|306286662|gb|EFM58220.1| cold shock protein [Brucella sp. BO2] Length = 83 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N +KG+GFI P+ + G D+F+H SAV ++GL L + Q V+Y+ + D Sbjct: 13 MAQTGQVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLPGLADNQKVSYE-TEPD 68 Query: 61 ANGK 64 GK Sbjct: 69 RRGK 72 >gi|19551558|ref|NP_599560.1| cold shock protein [Corynebacterium glutamicum ATCC 13032] gi|62389205|ref|YP_224607.1| cold-shock protein CspA [Corynebacterium glutamicum ATCC 13032] gi|21323072|dbj|BAB97701.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032] gi|41324538|emb|CAF18878.1| COLD-SHOCK PROTEIN CSPA [Corynebacterium glutamicum ATCC 13032] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+NP+KG+GFI P ++ DVF+H S + G L E QLV ++ Sbjct: 3 QGTVKWFNPEKGFGFIAP---SDGSADVFVHYSEIEGNGFRTLEENQLVEFE 51 >gi|328884096|emb|CCA57335.1| Cold shock protein CspA [Streptomyces venezuelae ATCC 10712] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFI +G G DVF+H SA+ G +L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRSLEEGQRVEFEISQ 53 >gi|323160675|gb|EFZ46614.1| cold shock-like protein cspG [Escherichia coli E128010] Length = 70 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 41/59 (69%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ ++ DVF+H SA+ + G +L EGQ V++ +++ A G Sbjct: 7 GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSFS-IESGAKG 61 >gi|308274610|emb|CBX31209.1| Cold shock-like protein cspE [uncultured Desulfobacterium sp.] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N KG+GFI E G DVF+H SA+ +G L EG V++D Q Sbjct: 3 KGIVKWFNDKKGFGFI----EKEEGGDVFVHHSAITMSGFRTLAEGDRVSFDVEQ 53 >gi|194290614|ref|YP_002006521.1| cold shock protein, RNA chaperone, transcription antiterminator, affects expression of rpos and uspa [Cupriavidus taiwanensis LMG 19424] gi|193224449|emb|CAQ70460.1| cold shock protein, RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Cupriavidus taiwanensis LMG 19424] Length = 68 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI P+ E +++F H SA+ AG L EGQ V+++ VQ Sbjct: 4 GIVKWFNDAKGFGFIKPD---EGEEELFAHFSAIQMAGFKTLKEGQRVSFEVVQ 54 >gi|188996315|ref|YP_001930566.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|225848260|ref|YP_002728423.1| hypothetical protein SULAZ_0431 [Sulfurihydrogenibium azorense Az-Fu1] gi|188931382|gb|ACD66012.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|225643394|gb|ACN98444.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 68 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFIT + + DVF+H SA+ S G L EGQ V ++ Q++ K Sbjct: 5 GTVKWFNSKKGFGFITRD---DGQGDVFVHFSAIQSRGFKTLEEGQKVEFEIAQDEKGPK 61 >gi|153006879|ref|YP_001381204.1| cold-shock DNA-binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152030452|gb|ABS28220.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFIT + G+DVF H +A+ + G L EGQ V +D + Sbjct: 4 GTVKWFNDAKGFGFITQD---SGGEDVFCHHTAINAQGFRTLAEGQKVEFDVTK 54 >gi|148546481|ref|YP_001266583.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida F1] gi|148510539|gb|ABQ77399.1| cold-shock DNA-binding protein family [Pseudomonas putida F1] Length = 197 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + + D Sbjct: 132 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 183 >gi|262372339|ref|ZP_06065618.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] gi|262312364|gb|EEY93449.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] Length = 73 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI +++G DVF H S +A+ G L EGQ V +D +Q Sbjct: 7 GTVKWFNETKGFGFI----QSDNGQDVFAHYSEIANNGFKTLFEGQRVKFDVMQ 56 >gi|254514015|ref|ZP_05126076.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR5-3] gi|219676258|gb|EED32623.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR5-3] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +SG DVF H SA+ +G L EGQ V + Q + Sbjct: 7 GTVKWFNESKGFGFI----EQKSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKGPQ 62 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 63 --AENIVAV 69 >gi|160880077|ref|YP_001559045.1| cold-shock DNA-binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160428743|gb|ABX42306.1| cold-shock DNA-binding domain protein [Clostridium phytofermentans ISDg] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N KG+GFI S E G+DVF+H S +A G L +GQ VT++ Sbjct: 1 MKKGTVKWFNSQKGFGFI----SDEQGNDVFVHYSGLAMDGFKTLEDGQSVTFE 50 >gi|238784506|ref|ZP_04628514.1| Cold shock-like protein cspD [Yersinia bercovieri ATCC 43970] gi|238714569|gb|EEQ06573.1| Cold shock-like protein cspD [Yersinia bercovieri ATCC 43970] Length = 85 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQ 54 >gi|56807801|ref|ZP_00365651.1| COG1278: Cold shock proteins [Streptococcus pyogenes M49 591] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 4/49 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 +G++KW+N +KG+GFI STE+G DVF H SA+ + G L EGQ V Sbjct: 5 QGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQANGSKTLEEGQKV 49 >gi|291285780|ref|YP_003502598.1| Cold shock-like protein cspI [Escherichia coli O55:H7 str. CB9615] gi|331666067|ref|ZP_08366961.1| conserved domain protein [Escherichia coli TA143] gi|331680509|ref|ZP_08381168.1| conserved domain protein [Escherichia coli H591] gi|290765653|gb|ADD59614.1| Cold shock-like protein cspI [Escherichia coli O55:H7 str. CB9615] gi|323190384|gb|EFZ75660.1| cold shock-like protein cspI [Escherichia coli RN587/1] gi|324112028|gb|EGC06006.1| cold-shock DNA-binding domain-containing protein [Escherichia fergusonii B253] gi|325499892|gb|EGC97751.1| Cold shock-like protein cspI [Escherichia fergusonii ECD227] gi|331057118|gb|EGI29112.1| conserved domain protein [Escherichia coli TA143] gi|331071972|gb|EGI43308.1| conserved domain protein [Escherichia coli H591] Length = 70 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP+KG+GFITP+ ++ DVF+H SA+ S LTE Q V + ++N G Sbjct: 7 GLVKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFKTLTENQQVEFG-IENGPKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 AAVHVVAL 70 >gi|77917987|ref|YP_355802.1| cold shock protein [Pelobacter carbinolicus DSM 2380] gi|77544070|gb|ABA87632.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus DSM 2380] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI ++G DVF+H SA+ G +L EG V++D VQ G Sbjct: 3 EGTVKWFNDAKGFGFI----EQDNGPDVFVHFSAIQGEGFKSLAEGDRVSFDVVQGQ-KG 57 Query: 64 KYSAENLKL 72 SA K+ Sbjct: 58 PQSANVCKI 66 >gi|28871129|ref|NP_793748.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|66044651|ref|YP_234492.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|71734613|ref|YP_275919.1| cold shock domain-contain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|302064187|ref|ZP_07255728.1| cold-shock domain-contain protein [Pseudomonas syringae pv. tomato K40] gi|28854379|gb|AAO57443.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|63255358|gb|AAY36454.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|71555166|gb|AAZ34377.1| cold shock domain family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|320329669|gb|EFW85658.1| cold-shock domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330892234|gb|EGH24895.1| cold-shock domain-containing protein [Pseudomonas syringae pv. mori str. 301020] gi|331009339|gb|EGH89395.1| cold-shock domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 73 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 7 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 61 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 62 QAEDVIAALPR 72 >gi|330872660|gb|EGH06809.1| cold-shock protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 106 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 40 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 94 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 95 QAEDVIAALPR 105 >gi|328953011|ref|YP_004370345.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453335|gb|AEB09164.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans DSM 11109] Length = 68 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M G +KW+N KG+GFI S E+G DVF+H S++ S G +L+E V ++ VQ Sbjct: 1 MKETGRVKWFNDSKGFGFI----SRENGPDVFVHHSSIQSKGFRSLSENDEVEFEVVQ 54 >gi|294470716|gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum] Length = 295 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G + W++ KGYGFITP+ + GD++F+H+S++ S G +LT G+ V Y Sbjct: 13 GKVNWFSDGKGYGFITPD---DGGDELFVHQSSIVSDGFRSLTVGESVEY 59 >gi|283787799|ref|YP_003367664.1| cold shock protein [Citrobacter rodentium ICC168] gi|282951253|emb|CBG90947.1| cold shock protein [Citrobacter rodentium ICC168] Length = 70 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N DKG+GFITP+ ++ DVF+H SA+ + G +L EGQ V++ Sbjct: 7 GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 53 >gi|119503460|ref|ZP_01625543.1| Cold shock protein [marine gamma proteobacterium HTCC2080] gi|119460522|gb|EAW41614.1| Cold shock protein [marine gamma proteobacterium HTCC2080] Length = 68 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI EG G DVF+H SA+ G LT+GQ V + A G+ Sbjct: 6 GTVKWFNETKGYGFIEQEG----GPDVFVHFSAIQGDGFKTLTDGQKVQFTV----ATGQ 57 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 58 KGPQAENVVP 67 >gi|320160229|ref|YP_004173453.1| cold shock protein [Anaerolinea thermophila UNI-1] gi|319994082|dbj|BAJ62853.1| cold shock protein [Anaerolinea thermophila UNI-1] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KGYGFI S E+G DVF+H SA+ G +L EGQ V + Sbjct: 7 GTVKWFNSEKGYGFI----SRENGPDVFVHYSAIEGNGYRSLNEGQTVEF 52 >gi|313497560|gb|ADR58926.1| Cold-shock DNA-binding domain-containing protein [Pseudomonas putida BIRD-1] Length = 197 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + + D Sbjct: 132 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 183 >gi|300855138|ref|YP_003780122.1| cold-shock protein [Clostridium ljungdahlii DSM 13528] gi|300435253|gb|ADK15020.1| cold-shock protein [Clostridium ljungdahlii DSM 13528] Length = 65 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFIT E G D+F H S + S G L EGQ V+YD Q + Sbjct: 3 GTVKWFNGEKGFGFITG----EDGKDIFAHFSQINSDGYKTLEEGQKVSYDEGQGQKGPQ 58 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 59 --AENITVL 65 >gi|238749763|ref|ZP_04611268.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380] gi|238712418|gb|EEQ04631.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y +Q+ G Sbjct: 6 GQVKWFNEAKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYT-IQDSPRGP 61 Query: 65 YSAENLKL 72 +A + L Sbjct: 62 AAANVIAL 69 >gi|331091468|ref|ZP_08340306.1| cold shock protein cspA [Lachnospiraceae bacterium 2_1_46FAA] gi|330404024|gb|EGG83574.1| cold shock protein cspA [Lachnospiraceae bacterium 2_1_46FAA] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGFI S E+G+DVF+H + + G +L EGQ V ++ + A Sbjct: 1 MNKGTVKWFNNQKGYGFI----SDEAGNDVFVHYTGLNMEGFKSLEEGQAVEFE-ITEGA 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 KGPQAVNVVKL 66 >gi|308178448|ref|YP_003917854.1| cold shock protein [Arthrobacter arilaitensis Re117] gi|307745911|emb|CBT76883.1| cold shock protein [Arthrobacter arilaitensis Re117] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 5/55 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFI P +SGD DVF H SA+ + G L EGQ V ++ V+ Sbjct: 4 GIVKWFNAEKGFGFIAP----DSGDPDVFAHFSAIQTQGFRTLDEGQKVEFEVVE 54 >gi|307328240|ref|ZP_07607418.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306886074|gb|EFN17082.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI +G G DVF H S +A+ G L EGQ VT+D Sbjct: 4 GTVKWFNAAKGFGFIEQDGG---GADVFAHFSNIAAEGFRELLEGQKVTFD 51 >gi|294630012|ref|ZP_06708572.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292833345|gb|EFF91694.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFI +G G DVF+H SA+ G +L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRSLEEGQRVEFEISQ 53 >gi|289523010|ref|ZP_06439864.1| putative cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503553|gb|EFD24717.1| putative cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 65 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFIT +E G DVF+H SA+ G L EG V ++ V+ Sbjct: 3 GTVKWFNATKGYGFIT----SEDGKDVFVHYSAIDMKGFKTLEEGDKVEFEVVE 52 >gi|302519359|ref|ZP_07271701.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] gi|318056421|ref|ZP_07975144.1| cold-shock protein [Streptomyces sp. SA3_actG] gi|318077529|ref|ZP_07984861.1| cold-shock protein [Streptomyces sp. SA3_actF] gi|302428254|gb|EFL00070.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +++ G L EGQ V +D Q Sbjct: 4 GTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNISAQGFRELLEGQKVNFDIAQGQKG-- 58 Query: 65 YSAENL 70 +AEN+ Sbjct: 59 PTAENI 64 >gi|257068250|ref|YP_003154505.1| cold-shock DNA-binding protein family [Brachybacterium faecium DSM 4810] gi|256559068|gb|ACU84915.1| cold-shock DNA-binding protein family [Brachybacterium faecium DSM 4810] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +GS+KW+N +KGYGFI +G G DVF+H S + G L EGQ V ++ Q D Sbjct: 3 QGSVKWFNAEKGYGFIEIDG---GGADVFVHHSKIDMDGYRALDEGQRVEFEVSQGD 56 >gi|256826371|ref|YP_003150331.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM 20547] gi|256689764|gb|ACV07566.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM 20547] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N +KG+GFI +G GDDVF+H SA+ + G +L E Q V ++ Q Sbjct: 3 QGIVKWFNAEKGFGFIQQDG---GGDDVFVHFSAIQTNGYRSLEENQRVEFEITQ 54 >gi|161505814|ref|YP_001572926.1| major cold shock protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867161|gb|ABX23784.1| hypothetical protein SARI_03990 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 70 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N DKG+GFITP+ ++ DVF+H SA+ + G +L EGQ V++ Sbjct: 7 GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 53 >gi|167035202|ref|YP_001670433.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida GB-1] gi|166861690|gb|ABZ00098.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1] Length = 197 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + + D Sbjct: 132 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 183 >gi|328545164|ref|YP_004305273.1| cold shock-like transcription regulator protein [polymorphum gilvum SL003B-26A1] gi|326414906|gb|ADZ71969.1| Putative cold shock-like transcription regulator protein [Polymorphum gilvum SL003B-26A1] Length = 70 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+IK++N D+G+GFITPE G DVF+H SA AGL EG VT+ ++D Sbjct: 1 MRENGTIKFFNYDRGFGFITPE---NGGKDVFVHISAFEQAGLPAPEEGAKVTF-VAEDD 56 Query: 61 ANGK 64 G+ Sbjct: 57 RRGR 60 >gi|170723167|ref|YP_001750855.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida W619] gi|169761170|gb|ACA74486.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619] Length = 197 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + + D Sbjct: 132 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 183 >gi|325274567|ref|ZP_08140625.1| cold-shock protein [Pseudomonas sp. TJI-51] gi|324100294|gb|EGB98082.1| cold-shock protein [Pseudomonas sp. TJI-51] Length = 197 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + + D Sbjct: 132 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 183 >gi|262372451|ref|ZP_06065730.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] gi|262312476|gb|EEY93561.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] Length = 70 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI G GDDVF+H A+ G +L +GQ V + VQ Sbjct: 6 QGVVKWFNDTKGFGFIQRNG----GDDVFVHFRAIVGEGHRSLRDGQRVEFSVVQGQKG- 60 Query: 64 KYSAENLK 71 + AEN++ Sbjct: 61 -FQAENVQ 67 >gi|254283369|ref|ZP_04958337.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR51-B] gi|219679572|gb|EED35921.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR51-B] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +SG DVF H SA+ +G L EGQ V + Q + Sbjct: 7 GTVKWFNESKGFGFI----EQKSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKGPQ 62 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 63 --AENIVAV 69 >gi|169796701|ref|YP_001714494.1| cold shock-like protein [Acinetobacter baumannii AYE] gi|215484188|ref|YP_002326415.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294] gi|169149628|emb|CAM87518.1| cold shock-like protein [Acinetobacter baumannii AYE] gi|213987146|gb|ACJ57445.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 8/71 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +SG DVF H +A++G L EGQ VT++ Q G+ Sbjct: 7 GTVKWFNETKGFGFI----QQDSGPDVFAHFKEIATSGFKTLYEGQRVTFNITQ----GQ 58 Query: 65 YSAENLKLVPK 75 + ++P+ Sbjct: 59 KGPNAVNIIPQ 69 >gi|108759696|ref|YP_631543.1| CspA family cold-shock protein [Myxococcus xanthus DK 1622] gi|108463576|gb|ABF88761.1| cold-shock protein, CspA family [Myxococcus xanthus DK 1622] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +G G+D+F H +A+ + G L EGQ V +D + Sbjct: 4 GTVKWFNDAKGFGFIMQDG---GGEDLFCHHTAIQTQGFRTLQEGQKVEFDVARGPKG-- 58 Query: 65 YSAENLKLV 73 A+N++ V Sbjct: 59 LQAQNVRPV 67 >gi|326445076|ref|ZP_08219810.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] Length = 68 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S +A +G L EG LV +D Q + Sbjct: 4 GTVKWFNAEKGFGFIQQDG---GGPDVFAHYSNIAGSGYRELHEGDLVNFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|308504936|ref|XP_003114651.1| CRE-LIN-28 protein [Caenorhabditis remanei] gi|308258833|gb|EFP02786.1| CRE-LIN-28 protein [Caenorhabditis remanei] Length = 208 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + + E D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 24 GSCKWFNVSKGYGFVIDDITRE---DLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 79 >gi|242239458|ref|YP_002987639.1| cold shock-like protein CspC [Dickeya dadantii Ech703] gi|242131515|gb|ACS85817.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGTGFKTLAEGQNVEFE-IQDGQKG 60 >gi|197118603|ref|YP_002139030.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|253700626|ref|YP_003021815.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] gi|197087963|gb|ACH39234.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|251775476|gb|ACT18057.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+ E+G+DVF+H SA+ G +LTEG VT++ V+ Sbjct: 4 GTVKWFNDSKGFGFL----EQENGEDVFVHFSAINGDGFKSLTEGDSVTFEIVK 53 >gi|167564263|ref|ZP_02357179.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis EO147] gi|167571414|ref|ZP_02364288.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis C6786] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITPEG G+D+F H S + S G L E Q V ++ Sbjct: 4 GTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRSEGFKTLQENQKVEFE 51 >gi|254248343|ref|ZP_04941663.1| Cold shock protein [Burkholderia cenocepacia PC184] gi|124874844|gb|EAY64834.1| Cold shock protein [Burkholderia cenocepacia PC184] Length = 83 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 V G++KW+N KG+GFI+P+ GDD+F H S + G L EGQ V+++ Sbjct: 16 FVDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSFE 67 >gi|94971209|ref|YP_593257.1| cold-shock DNA-binding protein family protein [Candidatus Koribacter versatilis Ellin345] gi|94553259|gb|ABF43183.1| cold-shock DNA-binding protein family [Candidatus Koribacter versatilis Ellin345] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M +G++KW+N KGYGFI +G+DVF+H SA+ G L EG+ V +D ++ Sbjct: 1 MREKGTVKWFNGAKGYGFI----QRSTGEDVFVHFSAIQENGYRTLNEGETVEFDLLK 54 >gi|331016432|gb|EGH96488.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 106 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 40 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 94 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 95 QAEDVIAALPR 105 >gi|296100584|ref|YP_003610730.1| major cold shock protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055043|gb|ADF59781.1| major cold shock protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295095151|emb|CBK84241.1| cold-shock DNA-binding protein family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 70 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N DKG+GFITP+ ++ DVF+H SA+ + G +L EGQ V++ Sbjct: 7 GLVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 53 >gi|220930266|ref|YP_002507175.1| cold-shock DNA-binding domain protein [Clostridium cellulolyticum H10] gi|220000594|gb|ACL77195.1| cold-shock DNA-binding domain protein [Clostridium cellulolyticum H10] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N +KG+GFI +G G+DVF+H SA+ G L EG V +D V+ Sbjct: 1 MEKGRVKWFNAEKGFGFIERDG----GNDVFVHFSAITMDGYKTLEEGSEVVFDVVE 53 >gi|254505942|ref|ZP_05118087.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus 16] gi|323498518|ref|ZP_08103511.1| cold shock protein CspE [Vibrio sinaloensis DSM 21326] gi|219551165|gb|EED28145.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus 16] gi|323316407|gb|EGA69425.1| cold shock protein CspE [Vibrio sinaloensis DSM 21326] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V + Q + Sbjct: 7 GTVKWFNETKGFGFI----KQENGPDVFAHFSAITGDGFRTLAEGQKVEFVITQGQKGPQ 62 Query: 65 YSAENLKLV 73 AEN+K V Sbjct: 63 --AENIKAV 69 >gi|166712680|ref|ZP_02243887.1| major cold shock protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 71 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI S E+G+DVF+H A+ G +L EGQ V++ VQ Sbjct: 9 GLVKWFNDAKGFGFI----SRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQ 58 >gi|322420677|ref|YP_004199900.1| cold-shock DNA-binding domain-containing protein [Geobacter sp. M18] gi|320127064|gb|ADW14624.1| cold-shock DNA-binding domain protein [Geobacter sp. M18] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E+GDDVF+H SA+ G +L EG VT++ + Sbjct: 4 GTVKWFNDSKGFGFI----EQENGDDVFVHFSAITGDGFKSLAEGDSVTFEVAK 53 >gi|295838116|ref|ZP_06825049.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|302520033|ref|ZP_07272375.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] gi|318062306|ref|ZP_07981027.1| cold shock protein [Streptomyces sp. SA3_actG] gi|318081844|ref|ZP_07989153.1| cold shock protein [Streptomyces sp. SA3_actF] gi|197700035|gb|EDY46968.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|302428928|gb|EFL00744.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQ 53 >gi|171777642|ref|ZP_02919307.1| hypothetical protein STRINF_00142 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283170|gb|EDT48594.1| hypothetical protein STRINF_00142 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI S ESG DVF H S + S G +L +GQ V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFI----SQESGPDVFAHFSEIQSNGFKSLEDGQKVNFEVEQ 53 >gi|148266390|ref|YP_001233096.1| cold-shock DNA-binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146399890|gb|ABQ28523.1| cold-shock DNA-binding protein family [Geobacter uraniireducens Rf4] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 5/63 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI ++GDDVF+H SA+ G +L EG+ VT++ VQ G Sbjct: 4 GTVKWFNDSKGFGFI----EQDNGDDVFVHFSAIMGDGFKSLAEGEAVTFE-VQKGPKGL 58 Query: 65 YSA 67 +A Sbjct: 59 QAA 61 >gi|23502382|ref|NP_698509.1| cold-shock family protein [Brucella suis 1330] gi|62290402|ref|YP_222195.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|82700324|ref|YP_414898.1| cold shock DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|161619460|ref|YP_001593347.1| hypothetical protein BCAN_A1551 [Brucella canis ATCC 23365] gi|163843768|ref|YP_001628172.1| hypothetical protein BSUIS_A1571 [Brucella suis ATCC 23445] gi|189024628|ref|YP_001935396.1| Cold-shock DNA-binding domain protein [Brucella abortus S19] gi|225852991|ref|YP_002733224.1| hypothetical protein BMEA_A1565 [Brucella melitensis ATCC 23457] gi|254689700|ref|ZP_05152954.1| cold-shock family protein [Brucella abortus bv. 6 str. 870] gi|254694190|ref|ZP_05156018.1| cold-shock family protein [Brucella abortus bv. 3 str. Tulya] gi|254697843|ref|ZP_05159671.1| cold-shock family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254702232|ref|ZP_05164060.1| cold-shock family protein [Brucella suis bv. 5 str. 513] gi|254704767|ref|ZP_05166595.1| cold-shock family protein [Brucella suis bv. 3 str. 686] gi|254708180|ref|ZP_05170008.1| cold-shock family protein [Brucella pinnipedialis M163/99/10] gi|254710551|ref|ZP_05172362.1| cold-shock family protein [Brucella pinnipedialis B2/94] gi|254714734|ref|ZP_05176545.1| cold-shock family protein [Brucella ceti M644/93/1] gi|254717794|ref|ZP_05179605.1| cold-shock family protein [Brucella ceti M13/05/1] gi|254719549|ref|ZP_05181360.1| cold-shock family protein [Brucella sp. 83/13] gi|254730734|ref|ZP_05189312.1| cold-shock family protein [Brucella abortus bv. 4 str. 292] gi|256032045|ref|ZP_05445659.1| cold-shock family protein [Brucella pinnipedialis M292/94/1] gi|256045136|ref|ZP_05448036.1| cold-shock family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256061567|ref|ZP_05451709.1| cold-shock family protein [Brucella neotomae 5K33] gi|256114072|ref|ZP_05454842.1| cold-shock family protein [Brucella melitensis bv. 3 str. Ether] gi|256160241|ref|ZP_05457935.1| cold-shock family protein [Brucella ceti M490/95/1] gi|256255447|ref|ZP_05460983.1| cold-shock family protein [Brucella ceti B1/94] gi|256257951|ref|ZP_05463487.1| cold-shock family protein [Brucella abortus bv. 9 str. C68] gi|256263527|ref|ZP_05466059.1| cold-shock family protein [Brucella melitensis bv. 2 str. 63/9] gi|256369930|ref|YP_003107441.1| cold-shock family protein [Brucella microti CCM 4915] gi|260169180|ref|ZP_05755991.1| cold-shock family protein [Brucella sp. F5/99] gi|260546939|ref|ZP_05822678.1| cold-shock DNA-binding domain-containing protein [Brucella abortus NCTC 8038] gi|260565265|ref|ZP_05835749.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260565989|ref|ZP_05836459.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|260755234|ref|ZP_05867582.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260758454|ref|ZP_05870802.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260762280|ref|ZP_05874623.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884248|ref|ZP_05895862.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261214497|ref|ZP_05928778.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261219643|ref|ZP_05933924.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M13/05/1] gi|261222653|ref|ZP_05936934.1| cold-shock DNA-binding domain-containing protein [Brucella ceti B1/94] gi|261315687|ref|ZP_05954884.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261318125|ref|ZP_05957322.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261322531|ref|ZP_05961728.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M644/93/1] gi|261325575|ref|ZP_05964772.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae 5K33] gi|261752805|ref|ZP_05996514.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261755464|ref|ZP_05999173.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|261758694|ref|ZP_06002403.1| cold-shock DNA-binding domain-containing protein [Brucella sp. F5/99] gi|261885343|ref|ZP_06009382.1| cold-shock family protein [Campylobacter fetus subsp. venerealis str. Azul-94] gi|265984558|ref|ZP_06097293.1| cold-shock DNA-binding domain-containing protein [Brucella sp. 83/13] gi|265989155|ref|ZP_06101712.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265991570|ref|ZP_06104127.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995406|ref|ZP_06107963.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|265998617|ref|ZP_06111174.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M490/95/1] gi|294852832|ref|ZP_06793505.1| major cold shock protein [Brucella sp. NVSL 07-0026] gi|306838489|ref|ZP_07471330.1| cold shock protein [Brucella sp. NF 2653] gi|306844515|ref|ZP_07477104.1| cold shock protein [Brucella sp. BO1] gi|23348366|gb|AAN30424.1| cold-shock family protein [Brucella suis 1330] gi|62196534|gb|AAX74834.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|82616425|emb|CAJ11488.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus 2308] gi|161336271|gb|ABX62576.1| Hypothetical protein BCAN_A1551 [Brucella canis ATCC 23365] gi|163674491|gb|ABY38602.1| Hypothetical protein BSUIS_A1571 [Brucella suis ATCC 23445] gi|189020200|gb|ACD72922.1| Cold-shock DNA-binding domain protein [Brucella abortus S19] gi|225641356|gb|ACO01270.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|256000093|gb|ACU48492.1| cold-shock family protein [Brucella microti CCM 4915] gi|260095989|gb|EEW79866.1| cold-shock DNA-binding domain-containing protein [Brucella abortus NCTC 8038] gi|260151333|gb|EEW86427.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260155507|gb|EEW90587.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|260668772|gb|EEX55712.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672712|gb|EEX59533.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675342|gb|EEX62163.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260873776|gb|EEX80845.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260916104|gb|EEX82965.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260921237|gb|EEX87890.1| cold-shock DNA-binding domain-containing protein [Brucella ceti B1/94] gi|260924732|gb|EEX91300.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M13/05/1] gi|261295221|gb|EEX98717.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M644/93/1] gi|261297348|gb|EEY00845.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261301555|gb|EEY05052.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae 5K33] gi|261304713|gb|EEY08210.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261738678|gb|EEY26674.1| cold-shock DNA-binding domain-containing protein [Brucella sp. F5/99] gi|261742558|gb|EEY30484.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261745217|gb|EEY33143.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|262553241|gb|EEZ09075.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M490/95/1] gi|262766519|gb|EEZ12308.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263002354|gb|EEZ14929.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093556|gb|EEZ17581.1| cold-shock family protein [Brucella melitensis bv. 2 str. 63/9] gi|264661352|gb|EEZ31613.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|264663150|gb|EEZ33411.1| cold-shock DNA-binding domain-containing protein [Brucella sp. 83/13] gi|294821421|gb|EFG38420.1| major cold shock protein [Brucella sp. NVSL 07-0026] gi|306275126|gb|EFM56882.1| cold shock protein [Brucella sp. BO1] gi|306406453|gb|EFM62691.1| cold shock protein [Brucella sp. NF 2653] Length = 71 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N +KG+GFI P+ + G D+F+H SAV ++GL L + Q V+Y+ + D Sbjct: 1 MAQTGQVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLPGLADNQKVSYE-TEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 RRGK 60 >gi|124267649|ref|YP_001021653.1| cold-shock DNA-binding protein family protein [Methylibium petroleiphilum PM1] gi|124260424|gb|ABM95418.1| cold-shock DNA-binding protein family [Methylibium petroleiphilum PM1] Length = 89 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KG+GFI PEG G+DVF H SA+ G L +G V+++ V Sbjct: 4 GTVKWFNDAKGFGFIEPEG---GGEDVFAHFSAILMDGFRTLKQGARVSFELV 53 >gi|15804102|ref|NP_290141.1| major cold shock protein [Escherichia coli O157:H7 EDL933] gi|15833695|ref|NP_312468.1| major cold shock protein [Escherichia coli O157:H7 str. Sakai] gi|16131427|ref|NP_418012.1| RNA chaperone and anti-terminator, cold-inducible [Escherichia coli str. K-12 substr. MG1655] gi|16762659|ref|NP_458276.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|24114823|ref|NP_709333.1| major cold shock protein [Shigella flexneri 2a str. 301] gi|26250199|ref|NP_756239.1| major cold shock protein [Escherichia coli CFT073] gi|29144146|ref|NP_807488.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30065165|ref|NP_839336.1| major cold shock protein [Shigella flexneri 2a str. 2457T] gi|56415543|ref|YP_152618.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182151|ref|YP_218568.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|74314190|ref|YP_312609.1| major cold shock protein [Shigella sonnei Ss046] gi|82545921|ref|YP_409868.1| major cold shock protein [Shigella boydii Sb227] gi|82779380|ref|YP_405729.1| major cold shock protein [Shigella dysenteriae Sd197] gi|89110458|ref|AP_004238.1| major cold shock protein [Escherichia coli str. K-12 substr. W3110] gi|91213070|ref|YP_543056.1| major cold shock protein [Escherichia coli UTI89] gi|110643804|ref|YP_671534.1| major cold shock protein [Escherichia coli 536] gi|110807352|ref|YP_690872.1| major cold shock protein [Shigella flexneri 5 str. 8401] gi|152972426|ref|YP_001337572.1| major cold shock protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157149172|ref|YP_001456492.1| major cold shock protein [Citrobacter koseri ATCC BAA-895] gi|157155319|ref|YP_001465032.1| major cold shock protein [Escherichia coli E24377A] gi|157163031|ref|YP_001460349.1| major cold shock protein [Escherichia coli HS] gi|161616716|ref|YP_001590682.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168232491|ref|ZP_02657549.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235252|ref|ZP_02660310.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|170018215|ref|YP_001723169.1| major cold shock protein [Escherichia coli ATCC 8739] gi|170083064|ref|YP_001732384.1| major cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|170683736|ref|YP_001745842.1| major cold shock protein [Escherichia coli SMS-3-5] gi|170766842|ref|ZP_02901295.1| cold shock DNA-binding protein [Escherichia albertii TW07627] gi|187730606|ref|YP_001882251.1| major cold shock protein [Shigella boydii CDC 3083-94] gi|187775668|ref|ZP_02797489.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|188024513|ref|ZP_02771920.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|188493329|ref|ZP_03000599.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|189010109|ref|ZP_02804714.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|189401797|ref|ZP_02778383.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|189402745|ref|ZP_02790978.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|189403738|ref|ZP_02784655.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|189404722|ref|ZP_02810435.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|189405473|ref|ZP_02822401.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|191165334|ref|ZP_03027177.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|191170525|ref|ZP_03032078.1| cold shock DNA-binding protein [Escherichia coli F11] gi|193061815|ref|ZP_03042912.1| cold shock DNA-binding protein [Escherichia coli E22] gi|193068536|ref|ZP_03049498.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194427483|ref|ZP_03060032.1| cold shock DNA-binding protein [Escherichia coli B171] gi|194431091|ref|ZP_03063384.1| cold shock DNA-binding protein [Shigella dysenteriae 1012] gi|194435705|ref|ZP_03067808.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|194443289|ref|YP_002042899.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450219|ref|YP_002047680.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469960|ref|ZP_03075944.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736943|ref|YP_002116583.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195935087|ref|ZP_03080469.1| major cold shock protein [Escherichia coli O157:H7 str. EC4024] gi|197249244|ref|YP_002148580.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262466|ref|ZP_03162540.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364470|ref|YP_002144107.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198241852|ref|YP_002217610.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386615|ref|ZP_03213227.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928494|ref|ZP_03219693.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354743|ref|YP_002228544.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205356895|ref|ZP_02342874.2| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205357597|ref|ZP_02571979.2| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205359051|ref|ZP_02666750.2| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205359542|ref|ZP_02830526.2| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205360333|ref|ZP_02682580.2| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206575782|ref|YP_002236070.1| cold shock-like protein CspA [Klebsiella pneumoniae 342] gi|207858886|ref|YP_002245537.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208807153|ref|ZP_03249490.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208812180|ref|ZP_03253509.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208821921|ref|ZP_03262241.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209400365|ref|YP_002273042.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209921021|ref|YP_002295105.1| major cold shock protein [Escherichia coli SE11] gi|213022040|ref|ZP_03336487.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163585|ref|ZP_03349295.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213422161|ref|ZP_03355227.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428098|ref|ZP_03360848.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582746|ref|ZP_03364572.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213607995|ref|ZP_03368821.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650792|ref|ZP_03380845.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852850|ref|ZP_03382382.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|215488841|ref|YP_002331272.1| major cold shock protein [Escherichia coli O127:H6 str. E2348/69] gi|217326515|ref|ZP_03442599.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|218550842|ref|YP_002384633.1| major cold shock protein [Escherichia fergusonii ATCC 35469] gi|218556117|ref|YP_002389030.1| major cold shock protein [Escherichia coli IAI1] gi|218560633|ref|YP_002393546.1| major cold shock protein [Escherichia coli S88] gi|218691847|ref|YP_002400059.1| major cold shock protein [Escherichia coli ED1a] gi|218697273|ref|YP_002404940.1| major cold shock protein [Escherichia coli 55989] gi|218702321|ref|YP_002409950.1| major cold shock protein [Escherichia coli IAI39] gi|218707191|ref|YP_002414710.1| major cold shock protein [Escherichia coli UMN026] gi|224585449|ref|YP_002639248.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|227883723|ref|ZP_04001528.1| major cold shock protein [Escherichia coli 83972] gi|237703327|ref|ZP_04533808.1| major cold shock protein [Escherichia sp. 3_2_53FAA] gi|237728871|ref|ZP_04559352.1| major cold shock protein [Citrobacter sp. 30_2] gi|238897019|ref|YP_002921765.1| major cold shock protein [Klebsiella pneumoniae NTUH-K2044] gi|238902644|ref|YP_002928440.1| major cold shock protein [Escherichia coli BW2952] gi|238910323|ref|ZP_04654160.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|253771610|ref|YP_003034441.1| major cold shock protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038740|ref|ZP_04872796.1| major cold shock protein [Escherichia sp. 1_1_43] gi|254163479|ref|YP_003046587.1| major cold shock protein [Escherichia coli B str. REL606] gi|254795513|ref|YP_003080350.1| major cold shock protein [Escherichia coli O157:H7 str. TW14359] gi|256020905|ref|ZP_05434770.1| major cold shock protein [Shigella sp. D9] gi|256025717|ref|ZP_05439582.1| major cold shock protein [Escherichia sp. 4_1_40B] gi|260846729|ref|YP_003224507.1| major cold shock protein CspA [Escherichia coli O103:H2 str. 12009] gi|260858048|ref|YP_003231939.1| major cold shock protein CspA [Escherichia coli O26:H11 str. 11368] gi|260870287|ref|YP_003236689.1| major cold shock protein CspA [Escherichia coli O111:H- str. 11128] gi|261224875|ref|ZP_05939156.1| major cold shock protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254226|ref|ZP_05946759.1| major cold shock protein CspA [Escherichia coli O157:H7 str. FRIK966] gi|283835935|ref|ZP_06355676.1| putative cold shock protein [Citrobacter youngae ATCC 29220] gi|288933068|ref|YP_003437127.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|289805377|ref|ZP_06536006.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289828312|ref|ZP_06546237.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|290511862|ref|ZP_06551230.1| cold shock protein cspA [Klebsiella sp. 1_1_55] gi|291284933|ref|YP_003501751.1| Cold shock protein cspA [Escherichia coli O55:H7 str. CB9615] gi|293407179|ref|ZP_06651103.1| cold shock protein CspB [Escherichia coli FVEC1412] gi|293412991|ref|ZP_06655659.1| cold shock protein cspA [Escherichia coli B354] gi|293417005|ref|ZP_06659642.1| cold shock protein cspA [Escherichia coli B185] gi|293453866|ref|ZP_06664285.1| cold shock protein cspA [Escherichia coli B088] gi|298382928|ref|ZP_06992523.1| cold shock protein CspB [Escherichia coli FVEC1302] gi|300815217|ref|ZP_07095442.1| transcriptional repressor activity CueR [Escherichia coli MS 107-1] gi|300822041|ref|ZP_07102184.1| transcriptional repressor activity CueR [Escherichia coli MS 119-7] gi|300898732|ref|ZP_07117043.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300902747|ref|ZP_07120703.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300920437|ref|ZP_07136871.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300925632|ref|ZP_07141498.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|300928228|ref|ZP_07143767.1| transcriptional repressor activity CueR [Escherichia coli MS 187-1] gi|300937162|ref|ZP_07152015.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|300950904|ref|ZP_07164783.1| transcriptional repressor activity CueR [Escherichia coli MS 116-1] gi|300955049|ref|ZP_07167457.1| transcriptional repressor activity CueR [Escherichia coli MS 175-1] gi|300971382|ref|ZP_07171451.1| transcriptional repressor activity CueR [Escherichia coli MS 45-1] gi|300976956|ref|ZP_07173691.1| transcriptional repressor activity CueR [Escherichia coli MS 200-1] gi|301026237|ref|ZP_07189700.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|301028176|ref|ZP_07191447.1| transcriptional repressor activity CueR [Escherichia coli MS 196-1] gi|301047090|ref|ZP_07194190.1| transcriptional repressor activity CueR [Escherichia coli MS 185-1] gi|301304609|ref|ZP_07210718.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|301646011|ref|ZP_07245917.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|306816090|ref|ZP_07450228.1| major cold shock protein [Escherichia coli NC101] gi|307140246|ref|ZP_07499602.1| major cold shock protein [Escherichia coli H736] gi|307314309|ref|ZP_07593916.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|309787759|ref|ZP_07682370.1| cold shock-like protein cspG [Shigella dysenteriae 1617] gi|309796198|ref|ZP_07690609.1| transcriptional repressor activity CueR [Escherichia coli MS 145-7] gi|312968101|ref|ZP_07782312.1| cold shock-like protein cspG [Escherichia coli 2362-75] gi|312972169|ref|ZP_07786343.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|329999877|ref|ZP_08303546.1| cold shock protein [Klebsiella sp. MS 92-3] gi|331644267|ref|ZP_08345396.1| conserved domain protein [Escherichia coli H736] gi|331649387|ref|ZP_08350473.1| conserved domain protein [Escherichia coli M605] gi|331655193|ref|ZP_08356192.1| conserved domain protein [Escherichia coli M718] gi|331659872|ref|ZP_08360810.1| conserved domain protein [Escherichia coli TA206] gi|331665179|ref|ZP_08366080.1| conserved domain protein [Escherichia coli TA143] gi|331670390|ref|ZP_08371229.1| conserved domain protein [Escherichia coli TA271] gi|331675046|ref|ZP_08375803.1| conserved domain protein [Escherichia coli TA280] gi|331679637|ref|ZP_08380307.1| conserved domain protein [Escherichia coli H591] gi|331685219|ref|ZP_08385805.1| conserved domain protein [Escherichia coli H299] gi|332282124|ref|ZP_08394537.1| major cold shock protein [Shigella sp. D9] gi|76364240|sp|P0A9X9|CSPA_ECOLI RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|76364241|sp|P0A9Y5|CSPA_SALEN RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|76364242|sp|P0A9Y2|CSPA_SALTY RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|76364243|sp|P0A9Y4|CSPA_SHIFL RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|85687548|sp|P0A9Y1|CSPA_ECO57 RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|85687549|sp|P0A9Y0|CSPA_ECOL6 RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|85687550|sp|P0A9Y3|CSPA_SALTI RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|25296126|pir||AG0981 cold shock protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|306991504|pdb|2L15|A Chain A, Solution Structure Of Cold Shock Protein Cspa Using Combined Nmr And Cs-Rosetta Method gi|12518291|gb|AAG58705.1|AE005582_8 cold shock protein 7.4, transcriptional activator of hns [Escherichia coli O157:H7 str. EDL933] gi|26110628|gb|AAN82813.1|AE016768_231 Cold shock protein cspA [Escherichia coli CFT073] gi|145633|gb|AAA23617.1| cold shock protein (cspA) [Escherichia coli] gi|466694|gb|AAB18533.1| cold regulated [Escherichia coli str. K-12 substr. MG1655] gi|1789979|gb|AAC76580.1| RNA chaperone and anti-terminator, cold-inducible [Escherichia coli str. K-12 substr. MG1655] gi|2353338|gb|AAB69447.1| cold shock protein [Salmonella enterica subsp. enterica serovar Enteritidis] gi|2970683|gb|AAC06036.1| cold shock protein A [Salmonella enterica subsp. enterica serovar Typhimurium] gi|13363915|dbj|BAB37864.1| cold shock protein 7.4 [Escherichia coli O157:H7 str. Sakai] gi|16422214|gb|AAL22509.1| major cold shock protein 7.4 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504965|emb|CAD07979.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi] gi|24054054|gb|AAN45040.1| cold shock protein 7.4, transcriptional activator of hns [Shigella flexneri 2a str. 301] gi|29139783|gb|AAO71348.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30043427|gb|AAP19147.1| cold shock protein 7.4, transcriptional activator of hns [Shigella flexneri 2a str. 2457T] gi|56129800|gb|AAV79306.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129784|gb|AAX67487.1| Cold shock protein cspA (CSP-A) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|73857667|gb|AAZ90374.1| cold shock protein 7.4, transcriptional activator of hns [Shigella sonnei Ss046] gi|81243528|gb|ABB64238.1| cold shock protein 7.4 [Shigella dysenteriae Sd197] gi|81247332|gb|ABB68040.1| cold shock protein 7.4 [Shigella boydii Sb227] gi|85676489|dbj|BAE77739.1| major cold shock protein [Escherichia coli str. K12 substr. W3110] gi|91074644|gb|ABE09525.1| cold shock protein 7.4, transcriptional activator of hns [Escherichia coli UTI89] gi|110345396|gb|ABG71633.1| cold shock protein CspA [Escherichia coli 536] gi|110616900|gb|ABF05567.1| Cold shock protein cspA [Shigella flexneri 5 str. 8401] gi|150957275|gb|ABR79305.1| cold shock protein 7.4, transcriptional activator of hns [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157068711|gb|ABV07966.1| cold shock DNA-binding protein [Escherichia coli HS] gi|157077349|gb|ABV17057.1| cold shock DNA-binding protein [Escherichia coli E24377A] gi|157086377|gb|ABV16055.1| hypothetical protein CKO_05012 [Citrobacter koseri ATCC BAA-895] gi|161366080|gb|ABX69848.1| hypothetical protein SPAB_04535 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|169753143|gb|ACA75842.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|169890899|gb|ACB04606.1| major cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|170124280|gb|EDS93211.1| cold shock DNA-binding protein [Escherichia albertii TW07627] gi|170521454|gb|ACB19632.1| cold shock DNA-binding protein [Escherichia coli SMS-3-5] gi|187427598|gb|ACD06872.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94] gi|187771551|gb|EDU35395.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|188018410|gb|EDU56532.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|188488528|gb|EDU63631.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|189002424|gb|EDU71410.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|189358854|gb|EDU77273.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|189364591|gb|EDU83010.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|189369849|gb|EDU88265.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|189374634|gb|EDU93050.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|189379895|gb|EDU98311.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|190904736|gb|EDV64442.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|190909333|gb|EDV68919.1| cold shock DNA-binding protein [Escherichia coli F11] gi|192932605|gb|EDV85202.1| cold shock DNA-binding protein [Escherichia coli E22] gi|192958187|gb|EDV88628.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194401952|gb|ACF62174.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408523|gb|ACF68742.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194414523|gb|EDX30796.1| cold shock DNA-binding protein [Escherichia coli B171] gi|194420546|gb|EDX36622.1| cold shock DNA-binding protein [Shigella dysenteriae 1012] gi|194425248|gb|EDX41232.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|194456324|gb|EDX45163.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712445|gb|ACF91666.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197095947|emb|CAR61529.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212947|gb|ACH50344.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240721|gb|EDY23341.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291255|gb|EDY30607.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936368|gb|ACH73701.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603713|gb|EDZ02258.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321927|gb|EDZ07125.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274524|emb|CAR39563.1| cold shock protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325852|gb|EDZ13691.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330662|gb|EDZ17426.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333305|gb|EDZ20069.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338837|gb|EDZ25601.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344312|gb|EDZ31076.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350328|gb|EDZ36959.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206564840|gb|ACI06616.1| cold shock-like protein CspA [Klebsiella pneumoniae 342] gi|206710689|emb|CAR35049.1| cold shock protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208726954|gb|EDZ76555.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208733457|gb|EDZ82144.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208742044|gb|EDZ89726.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209161765|gb|ACI39198.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209755208|gb|ACI75916.1| cold shock protein 7.4 [Escherichia coli] gi|209755210|gb|ACI75917.1| cold shock protein 7.4 [Escherichia coli] gi|209755212|gb|ACI75918.1| cold shock protein 7.4 [Escherichia coli] gi|209755214|gb|ACI75919.1| cold shock protein 7.4 [Escherichia coli] gi|209755216|gb|ACI75920.1| cold shock protein 7.4 [Escherichia coli] gi|209914280|dbj|BAG79354.1| cold shock protein [Escherichia coli SE11] gi|215266913|emb|CAS11356.1| major cold shock protein [Escherichia coli O127:H6 str. E2348/69] gi|217322736|gb|EEC31160.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|218354005|emb|CAV00495.1| major cold shock protein [Escherichia coli 55989] gi|218358383|emb|CAQ91030.1| major cold shock protein [Escherichia fergusonii ATCC 35469] gi|218362885|emb|CAR00519.1| major cold shock protein [Escherichia coli IAI1] gi|218367402|emb|CAR05184.1| major cold shock protein [Escherichia coli S88] gi|218372307|emb|CAR20172.1| major cold shock protein [Escherichia coli IAI39] gi|218429411|emb|CAR10372.2| major cold shock protein [Escherichia coli ED1a] gi|218434288|emb|CAR15210.1| major cold shock protein [Escherichia coli UMN026] gi|222035271|emb|CAP78016.1| Cold shock protein cspA [Escherichia coli LF82] gi|224469977|gb|ACN47807.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|226839246|gb|EEH71269.1| major cold shock protein [Escherichia sp. 1_1_43] gi|226902591|gb|EEH88850.1| major cold shock protein [Escherichia sp. 3_2_53FAA] gi|226909493|gb|EEH95411.1| major cold shock protein [Citrobacter sp. 30_2] gi|227839303|gb|EEJ49769.1| major cold shock protein [Escherichia coli 83972] gi|238549347|dbj|BAH65698.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|238861704|gb|ACR63702.1| major cold shock protein [Escherichia coli BW2952] gi|242379073|emb|CAQ33874.1| CspA transcriptional activator [Escherichia coli BL21(DE3)] gi|253322654|gb|ACT27256.1| cold-shock DNA-binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975380|gb|ACT41051.1| major cold shock protein [Escherichia coli B str. REL606] gi|253979536|gb|ACT45206.1| major cold shock protein [Escherichia coli BL21(DE3)] gi|254594913|gb|ACT74274.1| major cold shock protein [Escherichia coli O157:H7 str. TW14359] gi|257756697|dbj|BAI28199.1| major cold shock protein CspA [Escherichia coli O26:H11 str. 11368] gi|257761876|dbj|BAI33373.1| major cold shock protein CspA [Escherichia coli O103:H2 str. 12009] gi|257766643|dbj|BAI38138.1| major cold shock protein CspA [Escherichia coli O111:H- str. 11128] gi|260447428|gb|ACX37850.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|261248799|emb|CBG26652.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995899|gb|ACY90784.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|281180601|dbj|BAI56931.1| cold shock protein [Escherichia coli SE15] gi|281602915|gb|ADA75899.1| Cold-shock DNA-binding protein family [Shigella flexneri 2002017] gi|284923590|emb|CBG36686.1| cold shock protein [Escherichia coli 042] gi|288887797|gb|ADC56115.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|289775652|gb|EFD83652.1| cold shock protein cspA [Klebsiella sp. 1_1_55] gi|290764806|gb|ADD58767.1| Cold shock protein cspA [Escherichia coli O55:H7 str. CB9615] gi|291068112|gb|EFE06221.1| putative cold shock protein [Citrobacter youngae ATCC 29220] gi|291321992|gb|EFE61423.1| cold shock protein cspA [Escherichia coli B088] gi|291425990|gb|EFE99024.1| cold shock protein CspB [Escherichia coli FVEC1412] gi|291431581|gb|EFF04566.1| cold shock protein cspA [Escherichia coli B185] gi|291468638|gb|EFF11131.1| cold shock protein cspA [Escherichia coli B354] gi|294490956|gb|ADE89712.1| cold shock DNA-binding protein [Escherichia coli IHE3034] gi|298276764|gb|EFI18282.1| cold shock protein CspB [Escherichia coli FVEC1302] gi|299878753|gb|EFI86964.1| transcriptional repressor activity CueR [Escherichia coli MS 196-1] gi|300300977|gb|EFJ57362.1| transcriptional repressor activity CueR [Escherichia coli MS 185-1] gi|300308426|gb|EFJ62946.1| transcriptional repressor activity CueR [Escherichia coli MS 200-1] gi|300318019|gb|EFJ67803.1| transcriptional repressor activity CueR [Escherichia coli MS 175-1] gi|300357611|gb|EFJ73481.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300395621|gb|EFJ79159.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|300405208|gb|EFJ88746.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300411306|gb|EFJ94844.1| transcriptional repressor activity CueR [Escherichia coli MS 45-1] gi|300412570|gb|EFJ95880.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300418272|gb|EFK01583.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|300449807|gb|EFK13427.1| transcriptional repressor activity CueR [Escherichia coli MS 116-1] gi|300457748|gb|EFK21241.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|300463773|gb|EFK27266.1| transcriptional repressor activity CueR [Escherichia coli MS 187-1] gi|300525404|gb|EFK46473.1| transcriptional repressor activity CueR [Escherichia coli MS 119-7] gi|300532109|gb|EFK53171.1| transcriptional repressor activity CueR [Escherichia coli MS 107-1] gi|300840087|gb|EFK67847.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|301075763|gb|EFK90569.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|305850486|gb|EFM50943.1| major cold shock protein [Escherichia coli NC101] gi|306906024|gb|EFN36544.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|307555662|gb|ADN48437.1| cold shock protein CspA [Escherichia coli ABU 83972] gi|307628638|gb|ADN72942.1| major cold shock protein [Escherichia coli UM146] gi|308120259|gb|EFO57521.1| transcriptional repressor activity CueR [Escherichia coli MS 145-7] gi|308924509|gb|EFP70005.1| cold shock-like protein cspG [Shigella dysenteriae 1617] gi|310334546|gb|EFQ00751.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|312287360|gb|EFR15269.1| cold shock-like protein cspG [Escherichia coli 2362-75] gi|312914675|dbj|BAJ38649.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312948122|gb|ADR28949.1| major cold shock protein [Escherichia coli O83:H1 str. NRG 857C] gi|313647586|gb|EFS12036.1| cold shock-like protein cspG [Shigella flexneri 2a str. 2457T] gi|315062841|gb|ADT77168.1| major cold shock protein [Escherichia coli W] gi|315138132|dbj|BAJ45291.1| cold shock protein cspA [Escherichia coli DH1] gi|315254086|gb|EFU34054.1| transcriptional repressor activity CueR [Escherichia coli MS 85-1] gi|315285298|gb|EFU44743.1| transcriptional repressor activity CueR [Escherichia coli MS 110-3] gi|315294135|gb|EFU53487.1| transcriptional repressor activity CueR [Escherichia coli MS 153-1] gi|315300090|gb|EFU59328.1| transcriptional repressor activity CueR [Escherichia coli MS 16-3] gi|315618408|gb|EFU98995.1| cold shock-like protein cspG [Escherichia coli 3431] gi|320088070|emb|CBY97832.1| Cold shock-like protein cspG CPS-G [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|320177195|gb|EFW52205.1| Cold shock protein CspA [Shigella dysenteriae CDC 74-1112] gi|320182073|gb|EFW56978.1| Cold shock protein CspA [Shigella boydii ATCC 9905] gi|320187079|gb|EFW61787.1| Cold shock protein CspA [Shigella flexneri CDC 796-83] gi|320191387|gb|EFW66037.1| Cold shock protein CspA [Escherichia coli O157:H7 str. EC1212] gi|320193931|gb|EFW68564.1| Cold shock protein CspA [Escherichia coli WV_060327] gi|320201422|gb|EFW76003.1| Cold shock protein CspA [Escherichia coli EC4100B] gi|320639877|gb|EFX09471.1| RNA chaperone/anti-terminator [Escherichia coli O157:H7 str. G5101] gi|320645040|gb|EFX14064.1| RNA chaperone/anti-terminator [Escherichia coli O157:H- str. 493-89] gi|320650307|gb|EFX18790.1| RNA chaperone/anti-terminator [Escherichia coli O157:H- str. H 2687] gi|320655882|gb|EFX23805.1| RNA chaperone/anti-terminator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661662|gb|EFX29077.1| RNA chaperone/anti-terminator [Escherichia coli O55:H7 str. USDA 5905] gi|320666686|gb|EFX33669.1| RNA chaperone/anti-terminator [Escherichia coli O157:H7 str. LSU-61] gi|321226705|gb|EFX51755.1| Cold shock protein CspA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613962|gb|EFY10898.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620331|gb|EFY17199.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625336|gb|EFY22163.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629997|gb|EFY26770.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634187|gb|EFY30922.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635912|gb|EFY32621.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643170|gb|EFY39744.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644609|gb|EFY41145.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650851|gb|EFY47243.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652985|gb|EFY49320.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659948|gb|EFY56188.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663281|gb|EFY59485.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668767|gb|EFY64920.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674430|gb|EFY70523.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678362|gb|EFY74423.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680868|gb|EFY76902.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687196|gb|EFY83169.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716639|gb|EFZ08210.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132010|gb|ADX19440.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323153885|gb|EFZ40119.1| cold shock-like protein cspG [Escherichia coli EPECa14] gi|323166951|gb|EFZ52690.1| cold shock-like protein cspG [Shigella sonnei 53G] gi|323174215|gb|EFZ59843.1| cold shock-like protein cspG [Escherichia coli LT-68] gi|323182712|gb|EFZ68114.1| cold shock-like protein cspG [Escherichia coli 1357] gi|323189283|gb|EFZ74566.1| cold shock-like protein cspG [Escherichia coli RN587/1] gi|323192155|gb|EFZ77388.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200659|gb|EFZ85733.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201369|gb|EFZ86435.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206769|gb|EFZ91723.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211801|gb|EFZ96633.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216160|gb|EGA00888.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220383|gb|EGA04837.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226240|gb|EGA10455.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228360|gb|EGA12491.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234181|gb|EGA18269.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237166|gb|EGA21233.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244685|gb|EGA28689.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249166|gb|EGA33084.1| RNA chaperone/anti-terminator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250715|gb|EGA34595.1| RNA chaperone/anti-terminator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257590|gb|EGA41277.1| RNA chaperone/anti-terminator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262299|gb|EGA45860.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266146|gb|EGA49637.1| RNA chaperone/anti-terminator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268781|gb|EGA52239.1| RNA chaperone/anti-terminator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323376568|gb|ADX48836.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323934742|gb|EGB31129.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1520] gi|323939545|gb|EGB35753.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323944546|gb|EGB40617.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323949800|gb|EGB45684.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H252] gi|323954899|gb|EGB50679.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H263] gi|323959439|gb|EGB55098.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H489] gi|323966026|gb|EGB61467.1| cold-shock DNA-binding domain-containing protein [Escherichia coli M863] gi|323971361|gb|EGB66602.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|323975031|gb|EGB70140.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TW10509] gi|324007334|gb|EGB76553.1| transcriptional repressor activity CueR [Escherichia coli MS 57-2] gi|324014208|gb|EGB83427.1| transcriptional repressor activity CueR [Escherichia coli MS 60-1] gi|324021129|gb|EGB90348.1| transcriptional repressor activity CueR [Escherichia coli MS 117-3] gi|324111895|gb|EGC05875.1| cold-shock DNA-binding domain-containing protein [Escherichia fergusonii B253] gi|324116564|gb|EGC10481.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1167] gi|325499116|gb|EGC96975.1| major cold shock protein [Escherichia fergusonii ECD227] gi|326337439|gb|EGD61274.1| Cold shock protein CspA [Escherichia coli O157:H7 str. 1044] gi|326339964|gb|EGD63771.1| Cold shock protein CspA [Escherichia coli O157:H7 str. 1125] gi|326625395|gb|EGE31740.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629882|gb|EGE36225.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|327251207|gb|EGE62900.1| cold shock-like protein cspG [Escherichia coli STEC_7v] gi|328538186|gb|EGF64339.1| cold shock protein [Klebsiella sp. MS 92-3] gi|330909619|gb|EGH38133.1| cold shock protein CspA [Escherichia coli AA86] gi|331036561|gb|EGI08787.1| conserved domain protein [Escherichia coli H736] gi|331041885|gb|EGI14029.1| conserved domain protein [Escherichia coli M605] gi|331047208|gb|EGI19286.1| conserved domain protein [Escherichia coli M718] gi|331053087|gb|EGI25120.1| conserved domain protein [Escherichia coli TA206] gi|331057689|gb|EGI29675.1| conserved domain protein [Escherichia coli TA143] gi|331062452|gb|EGI34372.1| conserved domain protein [Escherichia coli TA271] gi|331067955|gb|EGI39353.1| conserved domain protein [Escherichia coli TA280] gi|331072809|gb|EGI44134.1| conserved domain protein [Escherichia coli H591] gi|331077590|gb|EGI48802.1| conserved domain protein [Escherichia coli H299] gi|332085082|gb|EGI90262.1| cold shock-like protein cspG [Shigella boydii 5216-82] gi|332085822|gb|EGI90986.1| cold shock-like protein cspG [Shigella dysenteriae 155-74] gi|332089367|gb|EGI94471.1| cold shock-like protein cspG [Shigella boydii 3594-74] gi|332104476|gb|EGJ07822.1| major cold shock protein [Shigella sp. D9] gi|332345523|gb|AEE58857.1| cold shock-like protein CspG [Escherichia coli UMNK88] gi|332750008|gb|EGJ80420.1| cold shock-like protein cspG [Shigella flexneri K-671] gi|332750165|gb|EGJ80576.1| cold shock-like protein cspG [Shigella flexneri 4343-70] gi|332751185|gb|EGJ81588.1| cold shock-like protein cspG [Shigella flexneri 2747-71] gi|332763435|gb|EGJ93674.1| cspA transcriptional activator [Shigella flexneri 2930-71] gi|332990500|gb|AEF09483.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] gi|332996874|gb|EGK16493.1| cold shock-like protein cspG [Shigella flexneri K-272] gi|332997304|gb|EGK16920.1| cold shock-like protein cspG [Shigella flexneri K-218] gi|333012564|gb|EGK31945.1| cold shock-like protein cspG [Shigella flexneri K-304] gi|333013441|gb|EGK32813.1| cold shock-like protein cspG [Shigella flexneri K-227] Length = 70 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N DKG+GFITP+ ++ DVF+H SA+ + G +L EGQ V++ Sbjct: 7 GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 53 >gi|237738393|ref|ZP_04568874.1| cold-shock DNA-binding domain-containing protein [Fusobacterium mortiferum ATCC 9817] gi|229420273|gb|EEO35320.1| cold-shock DNA-binding domain-containing protein [Fusobacterium mortiferum ATCC 9817] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N DKG+GFI S E G+D F+H S + + G +L EGQ V+++ + Sbjct: 3 KGTVKWFNKDKGFGFI----SGEDGNDYFVHYSNINAKGFRSLEEGQAVSFEVTE 53 >gi|231915|sp|Q01761|CSP7_STRCL RecName: Full=Cold shock-like protein 7.0 gi|46789|emb|CAA48316.1| 7 kDa cold shock like protein [Streptomyces clavuligerus ATCC 27064] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E Q+V +D + Sbjct: 4 GTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINATGFRSLEENQVVNFDVTHGE 56 >gi|302800247|ref|XP_002981881.1| hypothetical protein SELMODRAFT_154869 [Selaginella moellendorffii] gi|300150323|gb|EFJ16974.1| hypothetical protein SELMODRAFT_154869 [Selaginella moellendorffii] Length = 182 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 38/56 (67%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KG+GFITP+ +E ++F+H+SA+ + G +L EG++V + Q + Sbjct: 11 GKVKWFNVTKGFGFITPDDGSE---ELFVHQSAIFAEGFRSLREGEIVEFSVEQGE 63 >gi|70727397|ref|YP_254313.1| cold-shock protein C [Staphylococcus haemolyticus JCSC1435] gi|68448123|dbj|BAE05707.1| cold-shock protein C [Staphylococcus haemolyticus JCSC1435] Length = 67 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N +KG+GFI E G DVF+H S +A G L EGQ V +D + Sbjct: 1 MNNGTVKWFNAEKGFGFI----EREDGSDVFVHFSGIAGEGYKTLEEGQKVDFDITE 53 >gi|255640679|gb|ACU20624.1| unknown [Glycine max] Length = 170 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N KG+GFITP+ T DD+F+H +++ S G +L+EGQ V + Sbjct: 9 GMVKWFNSQKGFGFITPQDGT---DDLFVHFTSIRSDGYRSLSEGQSVEF 55 >gi|212710131|ref|ZP_03318259.1| hypothetical protein PROVALCAL_01185 [Providencia alcalifaciens DSM 30120] gi|212687338|gb|EEB46866.1| hypothetical protein PROVALCAL_01185 [Providencia alcalifaciens DSM 30120] Length = 81 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI+P + DVF+H SA+ S L EGQ V++ V+N A G Sbjct: 18 GLVKWFNESKGFGFISP---ADGSKDVFVHFSAIQSDSFKTLNEGQKVSFS-VENGAKGP 73 Query: 65 YSAENLKL 72 +A + L Sbjct: 74 AAANVVAL 81 >gi|85858086|ref|YP_460288.1| cold shock protein [Syntrophus aciditrophicus SB] gi|85721177|gb|ABC76120.1| cold shock protein [Syntrophus aciditrophicus SB] Length = 90 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + G DVF+H SA+ S+G L EGQ V+++ VQ G Sbjct: 28 GKVKWFNEQKGFGFI----EKDEGGDVFVHYSAIQSSGFKTLYEGQRVSFE-VQTGQKGP 82 Query: 65 YSAENLKLV 73 +A N+K + Sbjct: 83 -AAVNVKPI 90 >gi|58581133|ref|YP_200149.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623058|ref|YP_450430.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58425727|gb|AAW74764.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366998|dbj|BAE68156.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 71 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI S E+G+DVF+H A+ G +L EGQ V++ VQ Sbjct: 9 GLVKWFNDAKGFGFI----SRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQ 58 >gi|118581708|ref|YP_902958.1| cold-shock DNA-binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504418|gb|ABL00901.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM 2379] Length = 66 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+ E+G+DVF+H SA++ G +L EG VT++ V+ Sbjct: 4 GTVKWFNDSKGFGFL----EQENGEDVFVHFSAISGEGFKSLAEGDSVTFELVK 53 >gi|145297910|ref|YP_001140751.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850682|gb|ABO89003.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 69 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI G DVF+H S++ S G L EGQ V + Q Sbjct: 4 IRTGQVKWFNETKGFGFI----EQSQGPDVFVHFSSIQSTGFKTLAEGQKVQFTVTQGQK 59 Query: 62 NGKYSAENLKLV 73 + AEN+ L+ Sbjct: 60 GPQ--AENVTLL 69 >gi|163751971|ref|ZP_02159182.1| cold-shock DNA-binding domain family protein [Shewanella benthica KT99] gi|161328129|gb|EDP99296.1| cold-shock DNA-binding domain family protein [Shewanella benthica KT99] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58 +G++KW+N DKG+GFITPE ++ D+F+H S + + G F L +GQ V ++ Q Sbjct: 3 KGTVKWFNADKGFGFITPEDGSK---DLFVHHSEIQAGGGFATLNDGQEVEFEVGQ 55 >gi|110835605|ref|YP_694464.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2] gi|110648716|emb|CAL18192.1| cold-shock domain family protein [Alcanivorax borkumensis SK2] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+ + + G DVF+H SA+ +G L EGQ V+++ Q Sbjct: 4 GTVKWFNESKGFGFISQD---DGGADVFVHFSAITGSGFKTLAEGQKVSFEIQQ 54 >gi|311897785|dbj|BAJ30193.1| putative cold shock protein [Kitasatospora setae KM-6054] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54 >gi|283851981|ref|ZP_06369257.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. FW1012B] gi|283572705|gb|EFC20689.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. FW1012B] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW++ KGYGFI EG DDVF+H S++ G L EG++V ++ + + Sbjct: 1 MGFEGTVKWFSDKKGYGFIMREGQ----DDVFVHYSSIEGEGFRTLREGEIVNFEIIDGE 56 Query: 61 ANGK 64 K Sbjct: 57 RGPK 60 >gi|256831549|ref|YP_003160276.1| cold-shock DNA-binding domain-containing protein [Jonesia denitrificans DSM 20603] gi|256685080|gb|ACV07973.1| cold-shock DNA-binding domain protein [Jonesia denitrificans DSM 20603] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI PE + DVF H SA+ + G L E Q V +D Q Sbjct: 4 GTVKWFNAEKGFGFIAPE---DGSADVFAHYSAIQTNGYRTLEENQRVEFDVAQGPKG-- 58 Query: 65 YSAENLK 71 AEN++ Sbjct: 59 LQAENIR 65 >gi|153832932|ref|ZP_01985599.1| conserved domain protein [Vibrio harveyi HY01] gi|156976622|ref|YP_001447528.1| hypothetical protein VIBHAR_05396 [Vibrio harveyi ATCC BAA-1116] gi|269963648|ref|ZP_06177971.1| cold shock DNA-binding domain protein [Vibrio harveyi 1DA3] gi|148870855|gb|EDL69754.1| conserved domain protein [Vibrio harveyi HY01] gi|156528216|gb|ABU73301.1| hypothetical protein VIBHAR_05396 [Vibrio harveyi ATCC BAA-1116] gi|269831661|gb|EEZ85797.1| cold shock DNA-binding domain protein [Vibrio harveyi 1DA3] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V ++ Q + Sbjct: 7 GTVKWFNETKGFGFI----QQENGPDVFAHFSAIQGDGFRTLVEGQKVEFEITQGQKGPQ 62 Query: 65 YSAENLKLV 73 AE + LV Sbjct: 63 --AEKITLV 69 >gi|91783753|ref|YP_558959.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|187924184|ref|YP_001895826.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|296163324|ref|ZP_06846084.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|91687707|gb|ABE30907.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] gi|187715378|gb|ACD16602.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|295886416|gb|EFG66274.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G+D+F H S + S G +L E Q V+++ ++ GK Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRSEGFKSLQENQKVSFE-IKQGPKGK 59 Query: 65 YSAE 68 +A+ Sbjct: 60 QAAD 63 >gi|319760574|ref|YP_004124512.1| cold shock-like protein cspC [Candidatus Blochmannia vafer str. BVAF] gi|318039288|gb|ADV33838.1| cold shock-like protein cspC [Candidatus Blochmannia vafer str. BVAF] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G +KW+N KG+GFITP ++ DVF+H SA+ G L+EGQ V ++ Sbjct: 5 KGQVKWFNESKGFGFITP---SDGSKDVFVHFSAIQGNGFKTLSEGQNVEFE 53 >gi|307823940|ref|ZP_07654168.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307735234|gb|EFO06083.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 4/52 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55 G++KW+N KG+GFI+P ++ DVF+H SA+AS G + L EGQ V YD Sbjct: 4 GTVKWFNEAKGFGFISP---SDGSADVFVHFSAIASDGGYRTLAEGQAVKYD 52 >gi|295700731|ref|YP_003608624.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|295439944|gb|ADG19113.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G+D+F H S + ++G +L E Q V+++ V+ GK Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIQASGFKSLQENQKVSFE-VKQGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|209521754|ref|ZP_03270439.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|209497821|gb|EDZ97991.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G+D+F H S + ++G +L E Q V+++ V+ GK Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIQASGFKSLQENQKVSFE-VKQGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|26246906|ref|NP_752946.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli CFT073] gi|91209916|ref|YP_539902.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli UTI89] gi|110804882|ref|YP_688402.1| stationary phase/starvation inducible regulatory protein CspD [Shigella flexneri 5 str. 8401] gi|237707154|ref|ZP_04537635.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia sp. 3_2_53FAA] gi|291281884|ref|YP_003498702.1| Cold shock protein [Escherichia coli O55:H7 str. CB9615] gi|293414163|ref|ZP_06656812.1| cold shock domain-containing protein CspD [Escherichia coli B185] gi|293433178|ref|ZP_06661606.1| cold shock domain-containing protein CspD [Escherichia coli B088] gi|332282225|ref|ZP_08394638.1| stationary phase/starvation inducible regulatory protein CspD [Shigella sp. D9] gi|26107306|gb|AAN79489.1|AE016758_93 Cold shock-like protein cspD [Escherichia coli CFT073] gi|91071490|gb|ABE06371.1| cold shock-like protein CspD [Escherichia coli UTI89] gi|110614430|gb|ABF03097.1| cold shock protein [Shigella flexneri 5 str. 8401] gi|222032609|emb|CAP75348.1| Cold shock-like protein cspD [Escherichia coli LF82] gi|226898364|gb|EEH84623.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia sp. 3_2_53FAA] gi|281600209|gb|ADA73193.1| putative Cold shock protein [Shigella flexneri 2002017] gi|290761757|gb|ADD55718.1| Cold shock protein [Escherichia coli O55:H7 str. CB9615] gi|291323997|gb|EFE63419.1| cold shock domain-containing protein CspD [Escherichia coli B088] gi|291434221|gb|EFF07194.1| cold shock domain-containing protein CspD [Escherichia coli B185] gi|332104577|gb|EGJ07923.1| stationary phase/starvation inducible regulatory protein CspD [Shigella sp. D9] Length = 84 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 11 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQ 64 >gi|254388506|ref|ZP_05003740.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|294814077|ref|ZP_06772720.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|326442478|ref|ZP_08217212.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|197702227|gb|EDY48039.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|294326676|gb|EFG08319.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQ 53 >gi|239930514|ref|ZP_04687467.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291438875|ref|ZP_06578265.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291341770|gb|EFE68726.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQ 53 >gi|226941142|ref|YP_002796216.1| hypothetical protein LHK_02223 [Laribacter hongkongensis HLHK9] gi|226716069|gb|ACO75207.1| cold-shock domain family protein [Laribacter hongkongensis HLHK9] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI+P+ GDD+F H + + + G L EG+ VT++ Sbjct: 3 TQTGTVKWFNETKGFGFISPDA---GGDDLFAHFTEIQTKGFRTLAEGERVTFE 53 >gi|54295674|ref|YP_128089.1| hypothetical protein lpl2762 [Legionella pneumophila str. Lens] gi|296108496|ref|YP_003620197.1| Hypothetical Cold shock protein [Legionella pneumophila 2300/99 Alcoy] gi|53755506|emb|CAH17005.1| hypothetical protein lpl2762 [Legionella pneumophila str. Lens] gi|295650398|gb|ADG26245.1| Hypothetical Cold shock protein [Legionella pneumophila 2300/99 Alcoy] gi|307611722|emb|CBX01423.1| hypothetical protein LPW_31131 [Legionella pneumophila 130b] Length = 71 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 5/65 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH-RSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKGYGFI+ + DDVF+H RS V+SAG L EGQ V + V A G Sbjct: 7 GHVKWFNDDKGYGFISRDNGQ---DDVFVHFRSIVSSAGRKTLLEGQRVEF-LVTKGAKG 62 Query: 64 KYSAE 68 + E Sbjct: 63 LQAEE 67 >gi|51246052|ref|YP_065936.1| cold-shock protein [Desulfotalea psychrophila LSv54] gi|50877089|emb|CAG36929.1| probable cold-shock protein [Desulfotalea psychrophila LSv54] Length = 66 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KG+GFI EG G DVF+H SA+ G +LTEG V ++ + Sbjct: 3 EGTVKWFNDAKGFGFIEQEG----GQDVFVHYSAIGGEGFKSLTEGSRVNFEII 52 >gi|270055541|gb|ACZ59034.1| cold-shock protein C [Staphylococcus aureus] Length = 66 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N DKG+GFI + + DVF+H S +A G +L EGQ V +D V+ Sbjct: 1 MNNGTVKWFNADKGFGFIERDNDS----DVFVHYSGIAGEGYKSLEEGQNVDFDIVE 53 >gi|156934624|ref|YP_001438540.1| hypothetical protein ESA_02458 [Cronobacter sakazakii ATCC BAA-894] gi|156532878|gb|ABU77704.1| hypothetical protein ESA_02458 [Cronobacter sakazakii ATCC BAA-894] Length = 76 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQVVRFDVHQ 54 >gi|254386794|ref|ZP_05002084.1| cold shock protein [Streptomyces sp. Mg1] gi|194345629|gb|EDX26595.1| cold shock protein [Streptomyces sp. Mg1] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54 >gi|90408353|ref|ZP_01216516.1| cold shock DNA-binding domain protein [Psychromonas sp. CNPT3] gi|90310516|gb|EAS38638.1| cold shock DNA-binding domain protein [Psychromonas sp. CNPT3] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ S G L EGQ V + Q + Sbjct: 7 GTVKWFNESKGFGFI----EQENGPDVFAHFSAIVSNGFKTLAEGQKVQFTVTQGQKGPQ 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 --AENI 66 >gi|51244812|ref|YP_064696.1| cold-shock protein [Desulfotalea psychrophila LSv54] gi|50875849|emb|CAG35689.1| probable cold-shock protein [Desulfotalea psychrophila LSv54] Length = 66 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI EG GDD+F+H S+++ G L EG V++D Q Sbjct: 3 EGTVKWFNDAKGFGFIEQEG----GDDLFVHYSSISGEGFKTLQEGTRVSFDIEQ 53 >gi|157831974|pdb|1MJC|A Chain A, Crystal Structure Of Cspa, The Major Cold Shock Protein Of Escherichia Coli Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N DKG+GFITP+ ++ DVF+H SA+ + G +L EGQ V++ Sbjct: 6 GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 52 >gi|134293708|ref|YP_001117444.1| cold-shock DNA-binding protein family protein [Burkholderia vietnamiensis G4] gi|134136865|gb|ABO57979.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis G4] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI+P+ GDD+F H S + G L EGQ V+Y+ Sbjct: 4 GTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSYE 51 >gi|73539164|ref|YP_299531.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|94314737|ref|YP_587946.1| cold-shock DNA-binding protein family [Cupriavidus metallidurans CH34] gi|116693962|ref|YP_728173.1| cold-shock protein, DNA-binding [Ralstonia eutropha H16] gi|188591849|ref|YP_001796447.1| cold shock-like protein [Cupriavidus taiwanensis LMG 19424] gi|72122501|gb|AAZ64687.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] gi|93358589|gb|ABF12677.1| cold-shock DNA-binding protein family [Cupriavidus metallidurans CH34] gi|113528461|emb|CAJ94808.1| Cold-shock protein, DNA-binding [Ralstonia eutropha H16] gi|170938223|emb|CAP63208.1| Cold shock-like protein [Cupriavidus taiwanensis LMG 19424] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G D+F H S + +G L +GQ VT++ Q + Sbjct: 4 GTVKWFNETKGFGFITPD---DGGADLFAHFSEIQGSGFKTLKDGQRVTFEVKQGPKGLQ 60 Query: 65 YSA 67 SA Sbjct: 61 ASA 63 >gi|332283953|ref|YP_004415864.1| cold-shock protein [Pusillimonas sp. T7-7] gi|330427906|gb|AEC19240.1| cold-shock protein [Pusillimonas sp. T7-7] Length = 80 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ G+D+F H S++ G L EGQ V ++ Q Sbjct: 17 GTVKWFNDAKGFGFITPD---NGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIAQ 67 >gi|21222688|ref|NP_628467.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|302559987|ref|ZP_07312329.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] gi|8248794|emb|CAB93055.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|11933021|emb|CAC19350.1| cold-shock like protein [Streptomyces coelicolor] gi|302477605|gb|EFL40698.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQ 53 >gi|115358650|ref|YP_775788.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria AMMD] gi|170699551|ref|ZP_02890592.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171317033|ref|ZP_02906238.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|172063386|ref|YP_001811037.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria MC40-6] gi|115283938|gb|ABI89454.1| cold-shock DNA-binding protein family [Burkholderia ambifaria AMMD] gi|170135569|gb|EDT03856.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171097817|gb|EDT42639.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|171995903|gb|ACB66821.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MC40-6] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI+P+ GDD+F H S + G L EGQ V+Y+ Sbjct: 4 GTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSYE 51 >gi|301160186|emb|CBW19708.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323179480|gb|EFZ65047.1| cold shock-like protein cspG [Escherichia coli 1180] Length = 66 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N DKG+GFITP+ ++ DVF+H SA+ + G +L EGQ V++ Sbjct: 3 GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 49 >gi|239981380|ref|ZP_04703904.1| cold shock protein [Streptomyces albus J1074] gi|291453236|ref|ZP_06592626.1| cold shock protein [Streptomyces albus J1074] gi|302552310|ref|ZP_07304652.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] gi|291356185|gb|EFE83087.1| cold shock protein [Streptomyces albus J1074] gi|302469928|gb|EFL33021.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQ 53 >gi|224370369|ref|YP_002604533.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2] gi|223693086|gb|ACN16369.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2] Length = 86 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E+G+D+F+H S++ + G +L EG VT+D Q Sbjct: 24 GTVKWFNDSKGFGFI----EQENGEDLFVHHSSINATGFKSLNEGDKVTFDVEQ 73 >gi|297193625|ref|ZP_06911023.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|197721828|gb|EDY65736.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQ 53 >gi|116748887|ref|YP_845574.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697951|gb|ABK17139.1| cold-shock DNA-binding protein family [Syntrophobacter fumaroxidans MPOB] Length = 66 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI EG G DVF+H SA+ G +L EG V++ + A G Sbjct: 4 GRVKWFNDSKGFGFIEREG----GSDVFVHYSAIEGEGFKSLAEGDRVSF-VAEQGAKGP 58 Query: 65 YSAENLKL 72 +A+ KL Sbjct: 59 QAAQVRKL 66 >gi|116626278|ref|YP_828434.1| cold-shock DNA-binding protein family protein [Candidatus Solibacter usitatus Ellin6076] gi|116229440|gb|ABJ88149.1| cold-shock DNA-binding protein family [Candidatus Solibacter usitatus Ellin6076] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M +G++KW+N KGYGFI E+G+DVF+H SA+ + G L EG V ++ + Sbjct: 1 MKEKGTVKWFNAAKGYGFI----QRENGEDVFVHFSAIQTEGYRTLDEGSSVEFEVTK 54 >gi|187477994|ref|YP_786018.1| cold shock-like protein [Bordetella avium 197N] gi|115422580|emb|CAJ49105.1| cold shock-like protein [Bordetella avium 197N] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW+N +KGYGFITPE G D+F H S + S G L E Q V+Y Sbjct: 1 METGVVKWFNAEKGYGFITPE---SGGKDLFAHFSEIQSNGFKTLEENQRVSY 50 >gi|40062711|gb|AAR37624.1| cold shock DNA-binding domain protein [uncultured marine bacterium 314] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N KGYGFI E + DVF+H +AV AGL L EG +T++ V+N Sbjct: 1 MSLKGKVKWFNGKKGYGFIEREDKEK---DVFVHHTAVRDAGLKYLNEGDELTFE-VENG 56 Query: 61 ANGKYSAENLK 71 G SA NL+ Sbjct: 57 EKGP-SAVNLQ 66 >gi|290959448|ref|YP_003490630.1| cold shock protein [Streptomyces scabiei 87.22] gi|260648974|emb|CBG72088.1| cold shock protein [Streptomyces scabiei 87.22] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54 >gi|317053824|ref|YP_004117849.1| cold-shock DNA-binding domain-containing protein [Pantoea sp. At-9b] gi|316951819|gb|ADU71293.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b] Length = 70 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG++KW+N +KG+GFI+PE ++ DVF+H SA+ +L EGQ V + Sbjct: 6 RGTVKWFNSEKGFGFISPENGSK---DVFVHYSAIQGTDYRSLDEGQRVEF 53 >gi|120554651|ref|YP_959002.1| cold-shock DNA-binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120324500|gb|ABM18815.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei VT8] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI EG G DVF+H SA+ + G L EGQ V + Q Sbjct: 7 GHVKWFNESKGFGFIAQEG----GSDVFVHYSAINANGFRTLAEGQQVQFTVTQ 56 >gi|3891780|pdb|3MEF|A Chain A, Major Cold-Shock Protein From Escherichia Coli Solution Nmr Structure Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N DKG+GFITP+ ++ DVF+H SA+ + G +L EGQ V++ Sbjct: 6 GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 52 >gi|152974668|ref|YP_001374185.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023420|gb|ABS21190.1| putative cold-shock DNA-binding domain protein [Bacillus cytotoxicus NVH 391-98] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G G DVF+H SA+ + G +L EG+ V+++ ++N Sbjct: 1 MTVTGQVKWFNNEKGFGFIEVPG----GSDVFVHFSAITTEGFKSLEEGEKVSFE-IENG 55 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 56 NRGPQAKNVVKL 67 >gi|238762119|ref|ZP_04623092.1| Cold shock-like protein cspD [Yersinia kristensenii ATCC 33638] gi|238699847|gb|EEP92591.1| Cold shock-like protein cspD [Yersinia kristensenii ATCC 33638] Length = 85 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFD 51 >gi|170723258|ref|YP_001750946.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida W619] gi|169761261|gb|ACA74577.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI EG G DVF+H A+ G L EGQ V Y VQ Sbjct: 7 GNVKWFNDAKGFGFIQREG----GADVFVHYRAIRGEGHRTLVEGQRVEYSCVQ 56 >gi|304396175|ref|ZP_07378057.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|308187103|ref|YP_003931234.1| Cold shock-like protein cspC [Pantoea vagans C9-1] gi|304356544|gb|EFM20909.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|308057613|gb|ADO09785.1| Cold shock-like protein cspC [Pantoea vagans C9-1] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQSVEFE-IQDGQKG 60 >gi|182437019|ref|YP_001824738.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|239943163|ref|ZP_04695100.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998] gi|239989621|ref|ZP_04710285.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379] gi|282860556|ref|ZP_06269622.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|291446637|ref|ZP_06586027.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|326777634|ref|ZP_08236899.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465535|dbj|BAG20055.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|282564292|gb|EFB69828.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|291349584|gb|EFE76488.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|320009370|gb|ADW04220.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] gi|326657967|gb|EGE42813.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54 >gi|302392304|ref|YP_003828124.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM 5501] gi|302204381|gb|ADL13059.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM 5501] Length = 66 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KGYGFI G DDVF+H SA+ G L EGQ V + V+ D G Sbjct: 4 GTVKWFDGKKGYGFIEVPGE----DDVFVHFSAIEEEGFKTLEEGQEVQFKVVEGD-KGP 58 Query: 65 YSAENLKL 72 + E K+ Sbjct: 59 QAEEVTKI 66 >gi|163857106|ref|YP_001631404.1| cold shock-like protein [Bordetella petrii DSM 12804] gi|163260834|emb|CAP43136.1| cold shock-like protein [Bordetella petrii] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFITP+ ++ D+F H S ++S G +L E Q VT++ Q Sbjct: 4 GIVKWFNAEKGYGFITPDDGSK---DLFAHYSEISSEGYKSLQENQRVTFEVGQGPKGP- 59 Query: 65 YSAENLKL 72 SA+N+K+ Sbjct: 60 -SAKNIKV 66 >gi|146283150|ref|YP_001173303.1| cold-shock DNA-binding protein [Pseudomonas stutzeri A1501] gi|145571355|gb|ABP80461.1| cold-shock DNA-binding protein [Pseudomonas stutzeri A1501] Length = 243 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SGDDVF+H A+ G L EGQ V + + D Sbjct: 177 GTVKWFNTSKGFGFI----SRDSGDDVFVHFRAIRGEGHRILVEGQRVEFTIMMRD 228 >gi|320352985|ref|YP_004194324.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus DSM 2032] gi|320121487|gb|ADW17033.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus DSM 2032] Length = 66 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +G++KW+N KG+GFI E+G DVF+H SA++ +G L EG V ++ V Sbjct: 3 KGTVKWFNESKGFGFI----EQEAGKDVFVHYSAISGSGFKTLNEGDKVQFEIV 52 >gi|300722953|ref|YP_003712249.1| Qin prophage; cold shock protein [Xenorhabdus nematophila ATCC 19061] gi|297629466|emb|CBJ90067.1| Qin prophage; cold shock protein [Xenorhabdus nematophila ATCC 19061] Length = 71 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI+P ++ DVF+H SA+ S L+EGQ V + ++N A G Sbjct: 7 GLVKWFNADKGFGFISP---SDGSKDVFVHFSAIQSNDYRTLSEGQKVEFT-IENGAKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|323343048|ref|ZP_08083279.1| CspA family cold shock transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463112|gb|EFY08307.1| CspA family cold shock transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 66 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N DKG+GFI T+SG ++F+H S + S G L +G +VT+D +++D Sbjct: 1 MESGKVKFFNADKGFGFII----TDSGKEIFVHYSGIISDGFKTLNDGDVVTFD-IESDT 55 Query: 62 NGKYSAENLKL 72 G A N+K+ Sbjct: 56 RGD-KAINVKV 65 >gi|88703658|ref|ZP_01101374.1| cold shock DNA-binding domain protein [Congregibacter litoralis KT71] gi|88702372|gb|EAQ99475.1| cold shock DNA-binding domain protein [Congregibacter litoralis KT71] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +SG DVF H SA+ +G L EGQ V + Q + Sbjct: 7 GTVKWFNESKGFGFI----EQKSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKGPQ 62 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 63 --AENIVAV 69 >gi|123441858|ref|YP_001005841.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332162200|ref|YP_004298777.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122088819|emb|CAL11625.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606256|emb|CBY27754.1| cold shock proteins [Yersinia enterocolitica subsp. palearctica Y11] gi|325666430|gb|ADZ43074.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862901|emb|CBX73038.1| cold shock-like protein cspE [Yersinia enterocolitica W22703] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y +Q+ G Sbjct: 6 GQVKWFNEAKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYT-IQDSPRGP 61 Query: 65 YSAENLKL 72 +A + L Sbjct: 62 AAANVVAL 69 >gi|302873916|ref|YP_003842549.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|307689837|ref|ZP_07632283.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|302576773|gb|ADL50785.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans 743B] Length = 65 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFIT E G DVF H S + S G +L E Q V+Y+ V D Sbjct: 3 GTVKWFNAQKGFGFITG----EDGKDVFAHFSKINSDGYKSLEENQKVSYEVV--DGQKG 56 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 57 PQAENITII 65 >gi|297200544|ref|ZP_06917941.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|197709669|gb|EDY53703.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54 >gi|308177559|ref|YP_003916965.1| cold shock protein [Arthrobacter arilaitensis Re117] gi|307745022|emb|CBT75994.1| cold shock protein [Arthrobacter arilaitensis Re117] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFI P ++ DVF H SA+ S G +L EGQ V Y Sbjct: 4 GTVKWFNAEKGFGFIAP---SDGSADVFAHYSAIQSFGFRSLEEGQTVEY 50 >gi|238782952|ref|ZP_04626980.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970] gi|238716155|gb|EEQ08139.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970] Length = 70 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLEEGQNVEFS-IENGAKGP 62 Query: 65 YSAENLKL 72 +A + L Sbjct: 63 AAANVVAL 70 >gi|260597282|ref|YP_003209853.1| Cold shock-like protein cspD [Cronobacter turicensis z3032] gi|260216459|emb|CBA29590.1| Cold shock-like protein cspD [Cronobacter turicensis z3032] Length = 99 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 27 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQVVRFDVHQ 77 >gi|257454785|ref|ZP_05620036.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] gi|257447718|gb|EEV22710.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] Length = 70 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI + G DVF H S +AS+G L+EGQ V++ Q Sbjct: 7 GTVKWFNESKGFGFIEQD---NGGKDVFAHYSQIASSGFKTLSEGQRVSFVVTQ 57 >gi|222099783|ref|YP_002534351.1| Cold-shock DNA-binding protein family [Thermotoga neapolitana DSM 4359] gi|221572173|gb|ACM22985.1| Cold-shock DNA-binding protein family [Thermotoga neapolitana DSM 4359] Length = 78 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 RG++KW++ KGYGFIT E+G+D+F+H SA+ G L E + V +D Q Sbjct: 14 RGTVKWFDSKKGYGFIT----MENGEDIFVHWSAIQMDGFKTLRENEPVEFDVQQ 64 >gi|302544467|ref|ZP_07296809.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653] gi|307327771|ref|ZP_07606955.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|11933034|emb|CAC19354.1| cold-shock like protein [Streptomyces hygroscopicus] gi|297158355|gb|ADI08067.1| putative cold shock protein [Streptomyces bingchenggensis BCW-1] gi|302462085|gb|EFL25178.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653] gi|306886669|gb|EFN17671.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54 >gi|320323059|gb|EFW79148.1| cold-shock protein [Pseudomonas syringae pv. glycinea str. B076] Length = 120 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 54 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 108 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 109 QAEDVIAALPR 119 >gi|209877068|ref|XP_002139976.1| cold-shock DNA-binding domain-containing protein [Cryptosporidium muris RN66] gi|209555582|gb|EEA05627.1| cold-shock DNA-binding domain-containing protein [Cryptosporidium muris RN66] Length = 119 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M H G KW++ KG+GFITP+ +E D+F+H+ + G +L + + V Y+ V+ D Sbjct: 1 MPHSGVCKWFDSAKGFGFITPDDGSE---DIFVHQQNIKVEGFRSLGQAERVEYE-VETD 56 Query: 61 ANGKYSAENL 70 G+ A N+ Sbjct: 57 DKGRRKAVNV 66 >gi|26249019|ref|NP_755059.1| cold shock-like protein cspI [Escherichia coli CFT073] gi|157161028|ref|YP_001458346.1| cold shock DNA-binding protein [Escherichia coli HS] gi|26109426|gb|AAN81629.1|AE016765_31 Cold shock-like protein cspI [Escherichia coli CFT073] gi|157066708|gb|ABV05963.1| cold shock DNA-binding protein [Escherichia coli HS] gi|315293040|gb|EFU52392.1| transcriptional repressor activity CueR [Escherichia coli MS 153-1] Length = 71 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP+KG+GFITP+ ++ DVF+H SA+ S LTE Q V + ++N G Sbjct: 8 GLVKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFKTLTENQEVEFG-IENGPKGP 63 Query: 65 YSAENLKL 72 + + L Sbjct: 64 AAVHVVAL 71 >gi|89093186|ref|ZP_01166136.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp. MED92] gi|89082482|gb|EAR61704.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp. MED92] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N +KG+GFI E+G DVF H SA+ G +L EGQ V + Q Sbjct: 1 MATTGTVKWFNDEKGFGFI----EQENGPDVFAHFSAIQGDGFKSLAEGQKVEFTITQGQ 56 Query: 61 ANGKYSAENL 70 + AEN+ Sbjct: 57 KGPQ--AENI 64 >gi|309702046|emb|CBJ01360.1| cold shock-like protein CspC [Escherichia coli ETEC H10407] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDSQKG 60 >gi|16129511|ref|NP_416070.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. MG1655] gi|89108394|ref|AP_002174.1| cold shock protein [Escherichia coli str. K-12 substr. W3110] gi|170020098|ref|YP_001725052.1| cold-shock DNA-binding domain-containing protein [Escherichia coli ATCC 8739] gi|170081220|ref|YP_001730540.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|191169221|ref|ZP_03030975.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|193066944|ref|ZP_03047913.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194436556|ref|ZP_03068657.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|218551648|ref|YP_002385440.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC 35469] gi|218554114|ref|YP_002387027.1| cold shock protein; Qin prophage [Escherichia coli IAI1] gi|218561575|ref|YP_002394488.1| cold shock protein; Qin prophage [Escherichia coli S88] gi|218699878|ref|YP_002407507.1| cold shock protein; Qin prophage [Escherichia coli IAI39] gi|218705054|ref|YP_002412573.1| cold shock protein; Qin prophage [Escherichia coli UMN026] gi|238900772|ref|YP_002926568.1| Qin prophage; cold shock protein [Escherichia coli BW2952] gi|254161612|ref|YP_003044720.1| cold shock protein [Escherichia coli B str. REL606] gi|256022767|ref|ZP_05436632.1| cold shock protein [Escherichia sp. 4_1_40B] gi|260855290|ref|YP_003229181.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368] gi|297521188|ref|ZP_06939574.1| cold shock protein; Qin prophage [Escherichia coli OP50] gi|300899658|ref|ZP_07117889.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300903922|ref|ZP_07121817.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300917740|ref|ZP_07134386.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300938341|ref|ZP_07153095.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|301025109|ref|ZP_07188703.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|301307308|ref|ZP_07213320.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|301326423|ref|ZP_07219775.1| transcriptional repressor activity CueR [Escherichia coli MS 78-1] gi|301647713|ref|ZP_07247506.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|307138206|ref|ZP_07497562.1| cold shock protein; Qin prophage [Escherichia coli H736] gi|307310883|ref|ZP_07590529.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|312969564|ref|ZP_07783747.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|331642140|ref|ZP_08343275.1| conserved domain protein [Escherichia coli H736] gi|331652930|ref|ZP_08353935.1| conserved domain protein [Escherichia coli M718] gi|331668007|ref|ZP_08368862.1| conserved domain protein [Escherichia coli TA271] gi|331673141|ref|ZP_08373909.1| conserved domain protein [Escherichia coli TA280] gi|331683057|ref|ZP_08383658.1| conserved domain protein [Escherichia coli H299] gi|71154170|sp|P0A987|CSPI_ECOL6 RecName: Full=Cold shock-like protein CspI; Short=CPS-I gi|71154171|sp|P0A986|CSPI_ECOLI RecName: Full=Cold shock-like protein CspI; Short=CPS-I gi|1742550|dbj|BAA15254.1| cold shock protein [Escherichia coli str. K12 substr. W3110] gi|1787834|gb|AAC74625.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. MG1655] gi|169755026|gb|ACA77725.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|169889055|gb|ACB02762.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|190900732|gb|EDV60527.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|192959534|gb|EDV89968.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194424588|gb|EDX40574.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|218359190|emb|CAQ91855.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC 35469] gi|218360882|emb|CAQ98452.1| cold shock protein; Qin prophage [Escherichia coli IAI1] gi|218368344|emb|CAR06163.1| cold shock protein; Qin prophage [Escherichia coli S88] gi|218369864|emb|CAR17638.1| cold shock protein; Qin prophage [Escherichia coli IAI39] gi|218432151|emb|CAR13039.1| cold shock protein; Qin prophage [Escherichia coli UMN026] gi|222033313|emb|CAP76053.1| Cold shock-like protein cspI [Escherichia coli LF82] gi|238863367|gb|ACR65365.1| Qin prophage; cold shock protein [Escherichia coli BW2952] gi|253973513|gb|ACT39184.1| cold shock protein [Escherichia coli B str. REL606] gi|257753939|dbj|BAI25441.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368] gi|260449326|gb|ACX39748.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|300356783|gb|EFJ72653.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300396218|gb|EFJ79756.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|300404082|gb|EFJ87620.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300415017|gb|EFJ98327.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300456677|gb|EFK20170.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|300837501|gb|EFK65261.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|300846839|gb|EFK74599.1| transcriptional repressor activity CueR [Escherichia coli MS 78-1] gi|301074148|gb|EFK88954.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|306909061|gb|EFN39557.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|310337849|gb|EFQ02938.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|312946155|gb|ADR26982.1| putative cold shock protein [Escherichia coli O83:H1 str. NRG 857C] gi|315060851|gb|ADT75178.1| Qin prophage; cold shock protein [Escherichia coli W] gi|315136193|dbj|BAJ43352.1| cold shock DNA-binding protein [Escherichia coli DH1] gi|315253268|gb|EFU33236.1| transcriptional repressor activity CueR [Escherichia coli MS 85-1] gi|320178969|gb|EFW53930.1| Cold shock protein CspI [Shigella boydii ATCC 9905] gi|320197740|gb|EFW72348.1| Cold shock protein CspI [Escherichia coli EC4100B] gi|320643970|gb|EFX13059.1| putative cold shock protein [Escherichia coli O157:H- str. 493-89] gi|320649396|gb|EFX17940.1| putative cold shock protein [Escherichia coli O157:H- str. H 2687] gi|320660357|gb|EFX27831.1| putative cold shock protein [Escherichia coli O55:H7 str. USDA 5905] gi|323156718|gb|EFZ42856.1| cold shock-like protein cspI [Escherichia coli EPECa14] gi|323378579|gb|ADX50847.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323942031|gb|EGB38209.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323947939|gb|EGB43934.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323962248|gb|EGB57839.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H489] gi|323973806|gb|EGB68980.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|331038938|gb|EGI11158.1| conserved domain protein [Escherichia coli H736] gi|331049028|gb|EGI21100.1| conserved domain protein [Escherichia coli M718] gi|331064749|gb|EGI36653.1| conserved domain protein [Escherichia coli TA271] gi|331069339|gb|EGI40726.1| conserved domain protein [Escherichia coli TA280] gi|331079272|gb|EGI50469.1| conserved domain protein [Escherichia coli H299] gi|332343261|gb|AEE56595.1| cold shock-like protein CspI [Escherichia coli UMNK88] Length = 70 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP+KG+GFITP+ ++ DVF+H SA+ S LTE Q V + ++N G Sbjct: 7 GLVKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFKTLTENQEVEFG-IENGPKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 AAVHVVAL 70 >gi|326406197|gb|ADZ63268.1| cold shock protein beta-ribbon [Lactococcus lactis subsp. lactis CV56] Length = 91 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N KG+GFIT +E G D+F H S++ S G +L EGQ V +D Sbjct: 25 IMANGTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEGQKVEFD 75 >gi|302187164|ref|ZP_07263837.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. syringae 642] Length = 139 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 73 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 127 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 128 QAEDVIAALPR 138 >gi|288817819|ref|YP_003432166.1| cold shock protein [Hydrogenobacter thermophilus TK-6] gi|288787218|dbj|BAI68965.1| cold shock protein [Hydrogenobacter thermophilus TK-6] gi|308751417|gb|ADO44900.1| cold-shock DNA-binding domain protein [Hydrogenobacter thermophilus TK-6] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW++ +KGYGFIT + ++ DVF+H SA+ G L +GQ V ++ ++ D Sbjct: 1 MALKGTVKWFSKEKGYGFITRD---DNQGDVFVHFSAIQQRGFKTLEQGQRVEFE-IEED 56 Query: 61 ANGKYSAENLKLV 73 + G A+N++ + Sbjct: 57 SKGP-RAKNVRPI 68 >gi|282856781|ref|ZP_06266042.1| conserved domain protein [Pyramidobacter piscolens W5455] gi|282585404|gb|EFB90711.1| conserved domain protein [Pyramidobacter piscolens W5455] Length = 70 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +KW+N KG+GFIT TE G DVF+H SA+ G +L E + V +D V + Sbjct: 7 KGKVKWFNSTKGFGFIT----TEEGKDVFVHFSAIKMDGYKSLEENEEVEFDVVDGE 59 >gi|281492698|ref|YP_003354678.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|281376355|gb|ADA65845.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] Length = 66 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFIT +E G D+F H S++ S G +L EGQ V +D Sbjct: 4 GTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEGQKVEFD 50 >gi|82701971|ref|YP_411537.1| cold-shock DNA-binding domain-containing protein [Nitrosospira multiformis ATCC 25196] gi|82410036|gb|ABB74145.1| cold-shock DNA-binding protein family [Nitrosospira multiformis ATCC 25196] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW++ DKG+GFIT S E G D+F H S++ G L E Q VT+D V Sbjct: 6 GIVKWFSDDKGFGFIT---SDEGGKDLFAHFSSIVGEGFKTLQEAQRVTFDVV 55 >gi|74316697|ref|YP_314437.1| cold-shock DNA-binding protein family protein [Thiobacillus denitrificans ATCC 25259] gi|74056192|gb|AAZ96632.1| Possible Cold-shock DNA-binding domain protein [Thiobacillus denitrificans ATCC 25259] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H SA+ + G +L E Q V+++ V Sbjct: 1 METGTVKWFNDAKGFGFITPD---NGGEDLFAHFSAINANGFKSLQENQRVSFE-VTTGP 56 Query: 62 NGKYSAENLKLV 73 GK A N+++V Sbjct: 57 KGK-QASNIQVV 67 >gi|33519902|ref|NP_878734.1| cold shock-like protein CspC [Candidatus Blochmannia floridanus] gi|33504247|emb|CAD83510.1| cold shock-like protein CspC [Candidatus Blochmannia floridanus] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L+EGQ V ++ VQ+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLSEGQNVEFE-VQDGHKG 60 >gi|330877987|gb|EGH12136.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 73 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 7 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVGFS-VMNRDKGL 61 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 62 QAEDVIAALPR 72 >gi|94314090|ref|YP_587299.1| cold-shock DNA-binding domain-containing protein [Cupriavidus metallidurans CH34] gi|93357942|gb|ABF12030.1| cold-shock DNA-binding domain protein [Cupriavidus metallidurans CH34] Length = 126 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFITP+ GDD+F H S V G +L EGQ V Y Sbjct: 63 GTVKWFNDSKGFGFITPDA---GGDDLFAHFSEVQGNGFKSLQEGQKVRY 109 >gi|329941434|ref|ZP_08290713.1| cold shock protein [Streptomyces griseoaurantiacus M045] gi|11933043|emb|CAC19357.1| cold-shock like protein [Streptomyces nodosus] gi|329299965|gb|EGG43864.1| cold shock protein [Streptomyces griseoaurantiacus M045] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVEFEISQG 54 >gi|94313078|ref|YP_586287.1| cold-shock DNA-binding domain-containing protein [Cupriavidus metallidurans CH34] gi|93356930|gb|ABF11018.1| cold-shock DNA-binding domain protein, anti-terminator of transcription [Cupriavidus metallidurans CH34] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G++KW+N KG+GFITP+ G+D+F H SA+ G +L EGQ V Y Sbjct: 1 METGTVKWFNDAKGFGFITPDA---GGNDLFAHFSAIEGNGFKSLKEGQKVRY 50 >gi|323486640|ref|ZP_08091961.1| hypothetical protein HMPREF9474_03712 [Clostridium symbiosum WAL-14163] gi|323692214|ref|ZP_08106457.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14673] gi|323400021|gb|EGA92398.1| hypothetical protein HMPREF9474_03712 [Clostridium symbiosum WAL-14163] gi|323503788|gb|EGB19607.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14673] Length = 66 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGFI S E G+DVF+H S + G +L EG V ++ V N A Sbjct: 1 MNKGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLEEGAQVEFEVV-NGA 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 KGPQATNVVKL 66 >gi|327440809|dbj|BAK17174.1| cold shock protein [Solibacillus silvestris StLB046] Length = 66 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI EG G DVF H SA+ G L EGQ V + V++ G Sbjct: 3 QGTVKWFNSEKGFGFIEVEG----GSDVFAHFSAIQGDGFKTLEEGQKVEFS-VEDGQRG 57 Query: 64 KYSAENLKL 72 + +KL Sbjct: 58 PQATNIVKL 66 >gi|226359632|ref|YP_002777410.1| cold shock protein [Rhodococcus opacus B4] gi|226238117|dbj|BAH48465.1| cold shock protein [Rhodococcus opacus B4] Length = 81 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G+++W+N D+G+GF+ P + DDVF+H S +A G L EGQ V++ + D Sbjct: 18 GTVRWFNADQGFGFLAP---ADGSDDVFVHVSEIAGDGHRILVEGQRVSFTVCRTD 70 >gi|114778644|ref|ZP_01453460.1| cold shock protein [Mariprofundus ferrooxydans PV-1] gi|114551109|gb|EAU53670.1| cold shock protein [Mariprofundus ferrooxydans PV-1] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI + + GDDVF+H SA+ + G +L EGQ V ++ Sbjct: 4 GTVKWFNDTKGFGFIAQD---DGGDDVFVHFSAIQTDGFKSLQEGQKVEFE 51 >gi|309701157|emb|CBJ00457.1| cold shock-like protein CspD [Escherichia coli ETEC H10407] gi|323937987|gb|EGB34249.1| cold shock domain-containing protein CspD [Escherichia coli E1520] Length = 74 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQ 54 >gi|153876303|ref|ZP_02003697.1| Cold shock protein [Beggiatoa sp. PS] gi|152067232|gb|EDN66302.1| Cold shock protein [Beggiatoa sp. PS] Length = 71 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E G DVF+H +++ + G +L EGQ VT + Q Sbjct: 8 GTVKWFNDSKGFGFIEQEAG---GPDVFVHHTSIQADGFKSLQEGQKVTMEVTQGQKG-- 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 LQAENV 68 >gi|153008980|ref|YP_001370195.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151560868|gb|ABS14366.1| putative cold-shock DNA-binding domain protein [Ochrobactrum anthropi ATCC 49188] Length = 71 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N +KG+GFI P+ + G D+F+H SAV ++GL L + Q V+Y+ + D Sbjct: 1 MAQTGLVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLTGLADNQKVSYE-TEPD 56 Query: 61 ANGK 64 GK Sbjct: 57 RRGK 60 >gi|153955581|ref|YP_001396346.1| hypothetical protein CKL_2966 [Clostridium kluyveri DSM 555] gi|219855966|ref|YP_002473088.1| hypothetical protein CKR_2623 [Clostridium kluyveri NBRC 12016] gi|146348439|gb|EDK34975.1| Hypothetical protein CKL_2966 [Clostridium kluyveri DSM 555] gi|219569690|dbj|BAH07674.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 65 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N +KG+GFIT E G+D+F H S + S G L EGQ V++D Sbjct: 3 GTVKWFNGNKGFGFITG----EDGNDIFAHFSQINSQGYKTLEEGQKVSFD 49 >gi|90578292|ref|ZP_01234103.1| putative Cold shock-like protein [Vibrio angustum S14] gi|90441378|gb|EAS66558.1| putative Cold shock-like protein [Vibrio angustum S14] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+ G L EGQ V++D Q Sbjct: 6 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVSFDIEQ 56 >gi|120556517|ref|YP_960868.1| cold-shock DNA-binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120326366|gb|ABM20681.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei VT8] gi|311696264|gb|ADP99137.1| cold shock, CspA [marine bacterium HP15] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFIT EG G DVF+H SA+ +G L EGQ V + Q + Sbjct: 6 GTVKFFNEAKGFGFITREG----GPDVFVHYSAIQGSGFKTLAEGQQVEFTVTQGQKGPQ 61 Query: 65 YSAENL 70 AEN+ Sbjct: 62 --AENV 65 >gi|330448696|ref|ZP_08312344.1| cold-shock domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492887|dbj|GAA06841.1| cold-shock domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+ G L EGQ V++D Q Sbjct: 6 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVSFDIEQ 56 >gi|308049700|ref|YP_003913266.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM 9799] gi|307631890|gb|ADN76192.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM 9799] Length = 69 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N KG+GFI PEG G+DVF H S + G L GQ+V ++ Sbjct: 3 QGTVKWFNNAKGFGFICPEG---GGEDVFAHYSTIEMEGYRTLKAGQVVEFE 51 >gi|300925271|ref|ZP_07141166.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|300418604|gb|EFK01915.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] Length = 71 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP+KG+GFITP+ ++ DVF+H SA+ S LTE Q V + ++N G Sbjct: 8 GLVKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFKTLTENQEVEFG-IENGPKGP 63 Query: 65 YSAENLKL 72 + + L Sbjct: 64 AAVHVVAL 71 >gi|284921457|emb|CBG34526.1| cold shock-like protein [Escherichia coli 042] Length = 70 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP+KG+GFITP+ + DVF+H SA+ S LTE Q V + ++N G Sbjct: 7 GLVKWFNPEKGFGFITPK---DGSKDVFVHFSAIQSNDFKTLTENQEVEFG-IENGPKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 AAVHVVAL 70 >gi|269139481|ref|YP_003296182.1| major cold shock protein [Edwardsiella tarda EIB202] gi|267985142|gb|ACY84971.1| major cold shock protein [Edwardsiella tarda EIB202] gi|304559373|gb|ADM42037.1| Cold shock protein CspG [Edwardsiella tarda FL6-60] Length = 71 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + V+N G Sbjct: 7 GSVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNEFRTLDEGQQVEFS-VENGPKG 61 >gi|260460198|ref|ZP_05808450.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|259033843|gb|EEW35102.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] Length = 199 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 7/68 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KWY+P KG+GFI P + D F+H +A+ +G+ L EGQ+V + Q GK Sbjct: 136 GTVKWYDPQKGFGFIAP---NKGEKDAFVHATALTRSGISELLEGQMVLVECGQ----GK 188 Query: 65 YSAENLKL 72 E L + Sbjct: 189 KGLEVLSI 196 >gi|146318066|ref|YP_001197778.1| cold shock protein [Streptococcus suis 05ZYH33] gi|146320244|ref|YP_001199955.1| cold shock protein [Streptococcus suis 98HAH33] gi|253751260|ref|YP_003024401.1| cold shock protein [Streptococcus suis SC84] gi|253753161|ref|YP_003026301.1| cold shock protein [Streptococcus suis P1/7] gi|253754984|ref|YP_003028124.1| cold shock protein [Streptococcus suis BM407] gi|145688872|gb|ABP89378.1| Cold shock protein [Streptococcus suis 05ZYH33] gi|145691050|gb|ABP91555.1| Cold shock protein [Streptococcus suis 98HAH33] gi|251815549|emb|CAZ51132.1| cold shock protein [Streptococcus suis SC84] gi|251817448|emb|CAZ55189.1| cold shock protein [Streptococcus suis BM407] gi|251819406|emb|CAR44864.1| cold shock protein [Streptococcus suis P1/7] gi|292557828|gb|ADE30829.1| Cold shock protein [Streptococcus suis GZ1] gi|319757539|gb|ADV69481.1| cold shock protein [Streptococcus suis JS14] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI + E+G DVF H S + S G +L +GQ VT++ Q Sbjct: 3 QGTVKWFNAEKGFGFI----AQENGPDVFAHFSEIQSNGFKSLEDGQKVTFEVEQ 53 >gi|39995301|ref|NP_951252.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA] gi|39982063|gb|AAR33525.1| cold-shock domain family protein [Geobacter sulfurreducens PCA] gi|298504306|gb|ADI83029.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens KN400] Length = 66 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+ E+G+DVF H SA++ G +LTEG VT++ + Sbjct: 4 GTVKWFNDSKGFGFL----EQENGEDVFCHFSAISGDGFKSLTEGDRVTFEITK 53 >gi|85860950|ref|YP_463154.1| cold shock protein [Syntrophus aciditrophicus SB] gi|85724041|gb|ABC78984.1| cold shock protein [Syntrophus aciditrophicus SB] Length = 132 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI + ++G+DVF+H SA+ G L EG V +D V+ N Sbjct: 70 GTVKWFNASKGFGFI----AQDNGNDVFVHFSAIKMEGYKALEEGARVRFDVVK--GNKG 123 Query: 65 YSAENLKLV 73 +A+N++L+ Sbjct: 124 PAADNVELL 132 >gi|238795829|ref|ZP_04639342.1| Cold shock-like protein cspD [Yersinia mollaretii ATCC 43969] gi|238720292|gb|EEQ12095.1| Cold shock-like protein cspD [Yersinia mollaretii ATCC 43969] Length = 85 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFD 51 >gi|238025342|ref|YP_002909574.1| Cold-shock DNA-binding domain-containing protein [Burkholderia glumae BGR1] gi|237880007|gb|ACR32339.1| Cold-shock DNA-binding domain protein [Burkholderia glumae BGR1] Length = 67 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFITP+ +E DVF+H S + +G +L + Q V Y+ V+ Sbjct: 1 MYTGTVKWFNDAKGFGFITPDDGSE---DVFVHFSEIQVSGFKSLQDSQRVRYE-VRTGP 56 Query: 62 NGKYSAE 68 GK +A+ Sbjct: 57 KGKQAAD 63 >gi|237736040|ref|ZP_04566521.1| cold-shock protein [Fusobacterium mortiferum ATCC 9817] gi|229421854|gb|EEO36901.1| cold-shock protein [Fusobacterium mortiferum ATCC 9817] Length = 71 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GF+T +E G D F+H + + G L EGQ VT++ + Sbjct: 8 KGTVKWFNKEKGFGFVT----SEDGADYFVHFTGIVGEGFRTLEEGQAVTFEVTE 58 >gi|323169843|gb|EFZ55499.1| cold shock-like protein cspI [Escherichia coli LT-68] Length = 66 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP+KG+GFITP+ ++ DVF+H SA+ S LTE Q V + ++N G Sbjct: 3 GLVKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFKTLTENQEVEFG-IENGPKGP 58 Query: 65 YSAENLKL 72 + + L Sbjct: 59 AAVHVVAL 66 >gi|225027993|ref|ZP_03717185.1| hypothetical protein EUBHAL_02262 [Eubacterium hallii DSM 3353] gi|224954707|gb|EEG35916.1| hypothetical protein EUBHAL_02262 [Eubacterium hallii DSM 3353] Length = 89 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N KGYGFI ESG D+F+H + + G +L EG V +D VQ + Sbjct: 22 MFKGTVKWFNNQKGYGFI----QDESGKDIFVHYTGLNMPGFKSLEEGNEVEFDIVQGE 76 >gi|262275442|ref|ZP_06053252.1| putative Cold shock-like protein [Grimontia hollisae CIP 101886] gi|262220687|gb|EEY72002.1| putative Cold shock-like protein [Grimontia hollisae CIP 101886] Length = 68 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI E+G DVF+H A+ G L EGQ V ++ Q Sbjct: 6 GTVKWFNEEKGFGFI----QQENGPDVFVHFRAITGEGFKTLAEGQQVAFEIEQ 55 >gi|238797907|ref|ZP_04641398.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969] gi|238718212|gb|EEQ10037.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969] Length = 66 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 3 GLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLEEGQNVEFS-IENGAKGP 58 Query: 65 YSAENLKL 72 +A + L Sbjct: 59 AAANVVAL 66 >gi|156933606|ref|YP_001437522.1| hypothetical protein ESA_01428 [Cronobacter sakazakii ATCC BAA-894] gi|156531860|gb|ABU76686.1| hypothetical protein ESA_01428 [Cronobacter sakazakii ATCC BAA-894] Length = 90 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 26 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 81 >gi|15805932|ref|NP_294631.1| CSD family cold shock protein [Deinococcus radiodurans R1] gi|6458627|gb|AAF10483.1|AE001943_3 cold shock protein, CSD family [Deinococcus radiodurans R1] Length = 133 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 5/60 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI EGS DVF H SA+ S+G L EG V ++ ++ NGK Sbjct: 51 GRVKWFNAEKGFGFIETEGSA----DVFAHYSAINSSGFRKLNEGDEVEFE-IEPGQNGK 105 >gi|332996322|gb|EGK15949.1| cold shock-like protein cspG [Shigella flexneri VA-6] Length = 70 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N DKG+GFITP+ ++ DVF+H SA+ + G +L EGQ V++ Sbjct: 7 GIVKWFNADKGFGFITPDDGSK---DVFVHFSAIQNYGYKSLDEGQKVSF 53 >gi|332995286|gb|AEF05341.1| putative cold shock-like protein cspG [Alteromonas sp. SN2] Length = 69 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N DKGYGF+T + G DVF+H A+ S G L EGQ V ++ Sbjct: 6 GTVKWFNADKGYGFLTQD---NGGKDVFVHFRAIVSDGYKTLPEGQRVEFE 53 >gi|118595187|ref|ZP_01552534.1| Possible Cold-shock DNA-binding domain protein [Methylophilales bacterium HTCC2181] gi|118440965|gb|EAV47592.1| Possible Cold-shock DNA-binding domain protein [Methylophilales bacterium HTCC2181] Length = 68 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + GDD+F H SA+ G +L EG V+++ V + GK Sbjct: 4 GTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVDDGYKSLKEGARVSFE-VTDGPKGK 59 Query: 65 YSAENLK 71 A N++ Sbjct: 60 -QASNIQ 65 >gi|148652425|ref|YP_001279518.1| cold-shock DNA-binding domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571509|gb|ABQ93568.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1] gi|332977982|gb|EGK14726.1| cold shock protein CspA [Psychrobacter sp. 1501(2011)] Length = 71 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW+N KG+GFI + + G DVF H SA+ +G L EGQ VT+ Sbjct: 6 QGTVKWFNEAKGFGFIAQD---DGGQDVFAHYSAIQGSGFKTLAEGQKVTF 53 >gi|108763346|ref|YP_634172.1| cold-shock protein CspE [Myxococcus xanthus DK 1622] gi|4193398|gb|AAD10037.1| CspE [Myxococcus xanthus] gi|108467226|gb|ABF92411.1| cold-shock protein CspE [Myxococcus xanthus DK 1622] Length = 68 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFIT +G G+DVF H +A+ G L EGQ V ++ + Sbjct: 4 GTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLAEGQKVEFEVTR 54 >gi|302877658|ref|YP_003846222.1| cold-shock DNA-binding domain-containing protein [Gallionella capsiferriformans ES-2] gi|302580447|gb|ADL54458.1| cold-shock DNA-binding domain protein [Gallionella capsiferriformans ES-2] Length = 67 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+TP+ +E D+F H SA+ G L EGQ V+++ Q Sbjct: 4 GTVKWFNDAKGFGFVTPDDGSE---DLFAHFSAINMNGFKTLQEGQKVSFEVTQ 54 >gi|57239424|ref|YP_180560.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str. Welgevonden] gi|58579396|ref|YP_197608.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str. Welgevonden] gi|58617451|ref|YP_196650.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str. Gardel] gi|57161503|emb|CAH58429.1| hypothetical protein Erum6970 [Ehrlichia ruminantium str. Welgevonden] gi|58417063|emb|CAI28176.1| Putative Cold shock-like protein cspA [Ehrlichia ruminantium str. Gardel] gi|58418022|emb|CAI27226.1| Putative Cold shock-like protein cspA [Ehrlichia ruminantium str. Welgevonden] Length = 95 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 8/79 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGD------DVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G +KW++ +KGYGFI + + + D+F+H +A+ + + L EGQ V Y Sbjct: 18 IYTGYVKWFSSEKGYGFIRKDHGDKVKNIGQDVKDIFVHITALQKSRISELKEGQKVKYQ 77 Query: 56 YVQNDANGKYSAENLKLVP 74 +N NGK+SA NL+++ Sbjct: 78 LDKN--NGKFSAINLEVLE 94 >gi|330467479|ref|YP_004405222.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] gi|328810450|gb|AEB44622.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N DKG+GFI+ + + G DVF H SA++++G +L E Q V ++ Q Sbjct: 4 GTVKWFNGDKGFGFISQD---DGGADVFAHFSAISASGFRSLDENQRVQFEITQ 54 >gi|294637324|ref|ZP_06715621.1| conserved domain protein [Edwardsiella tarda ATCC 23685] gi|291089507|gb|EFE22068.1| conserved domain protein [Edwardsiella tarda ATCC 23685] Length = 71 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + V+N G Sbjct: 7 GSVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNEFRTLDEGQKVEFS-VENGPKG 61 >gi|163785451|ref|ZP_02180055.1| cold-shock domain family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879277|gb|EDP73177.1| cold-shock domain family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 76 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFIT + ++ D+F+H SA+ G NL EG+ V ++ VQ + Sbjct: 13 GTVKWFNSKKGFGFITRD---DNQGDIFVHYSAIEGEGFKNLEEGEKVEFEVVQEE 65 >gi|163802491|ref|ZP_02196384.1| bifunctional GMP synthase/glutamine amidotransferase protein [Vibrio sp. AND4] gi|159173792|gb|EDP58607.1| bifunctional GMP synthase/glutamine amidotransferase protein [Vibrio sp. AND4] Length = 70 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N KG+GF+T + G DVF+H A+ S G L EGQ V++ Q Sbjct: 7 GSVKWFNESKGFGFLTQD---NGGADVFVHFQAIVSEGFKTLVEGQKVSFSVEQ 57 >gi|74961778|sp|P91599|LIN28_CAERE RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage protein 28 gi|1763346|gb|AAC47477.1| LIN-28 [Caenorhabditis remanei] Length = 214 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + + E D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 51 GSCKWFNVSKGYGFVIDDITRE---DLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 106 >gi|120554260|ref|YP_958611.1| cold-shock DNA-binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120324109|gb|ABM18424.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei VT8] Length = 68 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFIT EG G DVF+H SA+ G L EGQ V + Q + Sbjct: 6 GTVKFFNESKGFGFITREG----GPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKGPQ 61 Query: 65 YSAENL 70 AEN+ Sbjct: 62 --AENV 65 >gi|325114942|emb|CBZ50498.1| cold-shock protein, DNA-binding, related [Neospora caninum Liverpool] Length = 125 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + RG KW++ KG+GFIT E G D+F+H++ + + G NL EG+ V + VQ Sbjct: 4 QIQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEF-RVQVG 58 Query: 61 ANGKYSA 67 +GK A Sbjct: 59 HDGKRKA 65 >gi|297735007|emb|CBI17369.3| unnamed protein product [Vitis vinifera] Length = 208 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G ++W++ KG+GFITP E G+D+F+H+S++ S G +L EG+ V + V + +G+ Sbjct: 8 GVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGE-DGR 63 Query: 65 YSAENL 70 A ++ Sbjct: 64 TKAVDV 69 >gi|261251425|ref|ZP_05943999.1| cold shock protein CspE [Vibrio orientalis CIP 102891] gi|260938298|gb|EEX94286.1| cold shock protein CspE [Vibrio orientalis CIP 102891] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V ++V Sbjct: 7 GTVKWFNETKGFGFI----QQENGPDVFAHFSAITGDGFRTLVEGQKV--EFVVTTGQKG 60 Query: 65 YSAENLKLV 73 AEN+K++ Sbjct: 61 PQAENIKVL 69 >gi|227549517|ref|ZP_03979566.1| cold shock protein Csp [Corynebacterium lipophiloflavum DSM 44291] gi|227078394|gb|EEI16357.1| cold shock protein Csp [Corynebacterium lipophiloflavum DSM 44291] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 5/52 (9%) Query: 4 RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW+N DKG+GFI P +GST DVF+H S + +G NL E Q V Y Sbjct: 3 QGTVKWFNGDKGFGFIAPNDGST----DVFVHFSEIQGSGYRNLEENQQVEY 50 >gi|269955008|ref|YP_003324797.1| cold-shock DNA-binding domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269303689|gb|ACZ29239.1| cold-shock DNA-binding domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 311 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 5/56 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++ WY P KGYGF+TP+G D+VF+H SA+ G+ ++EGQ V + V+ + Sbjct: 81 GTVSWYEPAKGYGFVTPDGGR---DEVFVHSSAIVGGGV--ISEGQRVAFLVVEGE 131 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++ WY+ KG+GF+ P+ G+DVF+H SA+ GL L EG VTYD V+ + Sbjct: 158 GTVSWYDDTKGFGFVAPD---SGGEDVFVHVSALG-PGLTELFEGARVTYDVVEGE 209 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++ Y+ ++G+GFITP+ G D+F+H S + G +L EG V + Q+D Sbjct: 250 GTVARYDAERGFGFITPDA---GGADLFVHVSVLRGVG--DLAEGDRVRFKVRQSD 300 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60 +G+++W++ ++G+GFI E D+F+H S V G L EGQ V ++ + D Sbjct: 3 QGTVRWFDAERGFGFIDVGNEAE---DLFVHASEIVGDDGPRLLREGQAVEFEVGEGD 57 >gi|145592834|ref|YP_001157131.1| cold-shock DNA-binding domain-containing protein [Salinispora tropica CNB-440] gi|159035978|ref|YP_001535231.1| cold-shock DNA-binding domain-containing protein [Salinispora arenicola CNS-205] gi|238061348|ref|ZP_04606057.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|145302171|gb|ABP52753.1| cold-shock DNA-binding protein family [Salinispora tropica CNB-440] gi|157914813|gb|ABV96240.1| cold-shock DNA-binding domain protein [Salinispora arenicola CNS-205] gi|237883159|gb|EEP71987.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI +G G DVF+H SA+ G L +GQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GQDVFVHFSAIEMDGYKALDDGQRVEFEIAQGQKGP 58 Query: 64 KYSAENLKLVP 74 + AE +++V Sbjct: 59 Q--AERVRVVA 67 >gi|90023468|ref|YP_529295.1| cold-shock DNA-binding protein family protein [Saccharophagus degradans 2-40] gi|89953068|gb|ABD83083.1| cold-shock DNA-binding protein family [Saccharophagus degradans 2-40] Length = 86 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 4/58 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N DKG+GFITP + G D+F+H S + A G L +GQ V ++ Q Sbjct: 19 MSKGTVKWFNADKGFGFITP---ADGGKDLFVHHSEIQAGGGYATLNDGQEVEFEVGQ 73 >gi|17548223|ref|NP_521563.1| cold shock-like transcription regulator protein [Ralstonia solanacearum GMI1000] gi|300693045|ref|YP_003749018.1| cold shock DNA binding protein (transcription regulator) [Ralstonia solanacearum PSI07] gi|17430469|emb|CAD17153.1| probable cold shock-like transcription regulator protein [Ralstonia solanacearum GMI1000] gi|299068439|emb|CBJ39662.1| Cold shock DNA binding protein (transcription regulator) [Ralstonia solanacearum CMR15] gi|299075082|emb|CBJ34363.1| Cold shock DNA binding protein (transcription regulator) [Ralstonia solanacearum PSI07] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G++KW+N KG+GFITP+G G D+F H S + +G L +GQ V+++ Q Sbjct: 4 GTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQG 55 >gi|15800638|ref|NP_286652.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H7 EDL933] gi|15830220|ref|NP_308993.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H7 str. Sakai] gi|16128848|ref|NP_415401.1| inhibitor of DNA replication, cold shock protein homolog [Escherichia coli str. K-12 substr. MG1655] gi|24112256|ref|NP_706766.1| stationary phase/starvation inducible regulatory protein CspD [Shigella flexneri 2a str. 301] gi|30062368|ref|NP_836539.1| stationary phase/starvation inducible regulatory protein CspD [Shigella flexneri 2a str. 2457T] gi|74311425|ref|YP_309844.1| stationary phase/starvation inducible regulatory protein CspD [Shigella sonnei Ss046] gi|82543367|ref|YP_407314.1| stationary phase/starvation inducible regulatory protein CspD [Shigella boydii Sb227] gi|82777597|ref|YP_403946.1| stationary phase/starvation inducible regulatory protein CspD [Shigella dysenteriae Sd197] gi|89107731|ref|AP_001511.1| cold shock protein homolog [Escherichia coli str. K-12 substr. W3110] gi|110641081|ref|YP_668811.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli 536] gi|157156996|ref|YP_001462077.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli E24377A] gi|157160403|ref|YP_001457721.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli HS] gi|168752461|ref|ZP_02777483.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4113] gi|168758796|ref|ZP_02783803.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4401] gi|168765085|ref|ZP_02790092.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4501] gi|168769857|ref|ZP_02794864.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4486] gi|168772142|ref|ZP_02797149.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4486] gi|168777873|ref|ZP_02802880.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4196] gi|168783791|ref|ZP_02808798.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4076] gi|168789132|ref|ZP_02814139.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC869] gi|168802711|ref|ZP_02827718.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC508] gi|170020717|ref|YP_001725671.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli ATCC 8739] gi|170080539|ref|YP_001729859.1| cold shock protein-like protein [Escherichia coli str. K-12 substr. DH10B] gi|170683368|ref|YP_001744327.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli SMS-3-5] gi|170769169|ref|ZP_02903622.1| cold shock domain protein CspD [Escherichia albertii TW07627] gi|187731789|ref|YP_001880922.1| stationary phase/starvation inducible regulatory protein CspD [Shigella boydii CDC 3083-94] gi|188495418|ref|ZP_03002688.1| cold shock domain protein CspD [Escherichia coli 53638] gi|191167603|ref|ZP_03029414.1| cold shock domain protein CspD [Escherichia coli B7A] gi|191172141|ref|ZP_03033685.1| cold shock domain protein CspD [Escherichia coli F11] gi|193064669|ref|ZP_03045748.1| cold shock domain protein CspD [Escherichia coli E22] gi|193071761|ref|ZP_03052657.1| cold shock domain protein CspD [Escherichia coli E110019] gi|194428406|ref|ZP_03060947.1| cold shock domain protein CspD [Escherichia coli B171] gi|194433169|ref|ZP_03065451.1| cold shock domain protein CspD [Shigella dysenteriae 1012] gi|194438741|ref|ZP_03070828.1| cold shock domain protein CspD [Escherichia coli 101-1] gi|195939543|ref|ZP_03084925.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H7 str. EC4024] gi|208807912|ref|ZP_03250249.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4206] gi|208814789|ref|ZP_03255968.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4045] gi|208822048|ref|ZP_03262367.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4042] gi|209400231|ref|YP_002269554.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4115] gi|209918129|ref|YP_002292213.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli SE11] gi|215486011|ref|YP_002328442.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O127:H6 str. E2348/69] gi|217324268|ref|ZP_03440352.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. TW14588] gi|218553466|ref|YP_002386379.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli IAI1] gi|218557784|ref|YP_002390697.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli S88] gi|218688662|ref|YP_002396874.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli ED1a] gi|218694354|ref|YP_002402021.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli 55989] gi|218700605|ref|YP_002408234.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli IAI39] gi|218704309|ref|YP_002411828.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli UMN026] gi|227884154|ref|ZP_04001959.1| cold shock family protein CspD [Escherichia coli 83972] gi|238900139|ref|YP_002925935.1| cold shock protein-like protein [Escherichia coli BW2952] gi|253774090|ref|YP_003036921.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160995|ref|YP_003044103.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli B str. REL606] gi|254792081|ref|YP_003076918.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H7 str. TW14359] gi|256020999|ref|ZP_05434864.1| stationary phase/starvation inducible regulatory protein CspD [Shigella sp. D9] gi|256023493|ref|ZP_05437358.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia sp. 4_1_40B] gi|260843131|ref|YP_003220909.1| cold shock protein homolog CspD [Escherichia coli O103:H2 str. 12009] gi|260854172|ref|YP_003228063.1| cold shock protein homolog CspD [Escherichia coli O26:H11 str. 11368] gi|260867053|ref|YP_003233455.1| cold shock protein homolog CspD [Escherichia coli O111:H- str. 11128] gi|261225536|ref|ZP_05939817.1| cold shock protein-like protein [Escherichia coli O157:H7 str. FRIK2000] gi|261258495|ref|ZP_05951028.1| hypothetical protein EscherichiacoliO157EcO_22126 [Escherichia coli O157:H7 str. FRIK966] gi|293404188|ref|ZP_06648182.1| cold shock-like protein cspD [Escherichia coli FVEC1412] gi|293409259|ref|ZP_06652835.1| cold shock domain-containing protein CspD [Escherichia coli B354] gi|297516223|ref|ZP_06934609.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli OP50] gi|298379969|ref|ZP_06989574.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli FVEC1302] gi|300817018|ref|ZP_07097237.1| cold shock domain protein CspD [Escherichia coli MS 107-1] gi|300823618|ref|ZP_07103745.1| cold shock domain protein CspD [Escherichia coli MS 119-7] gi|300895697|ref|ZP_07114293.1| cold shock domain protein CspD [Escherichia coli MS 198-1] gi|300902416|ref|ZP_07120398.1| cold shock domain protein CspD [Escherichia coli MS 84-1] gi|300921088|ref|ZP_07137472.1| cold shock domain protein CspD [Escherichia coli MS 115-1] gi|300922549|ref|ZP_07138650.1| cold shock domain protein CspD [Escherichia coli MS 182-1] gi|300928423|ref|ZP_07143956.1| cold shock domain protein CspD [Escherichia coli MS 187-1] gi|300935726|ref|ZP_07150694.1| cold shock domain protein CspD [Escherichia coli MS 21-1] gi|300950108|ref|ZP_07164054.1| cold shock domain protein CspD [Escherichia coli MS 116-1] gi|300954452|ref|ZP_07166904.1| cold shock domain protein CspD [Escherichia coli MS 175-1] gi|300978556|ref|ZP_07174309.1| cold shock domain protein CspD [Escherichia coli MS 45-1] gi|300991781|ref|ZP_07179644.1| cold shock domain protein CspD [Escherichia coli MS 200-1] gi|301020524|ref|ZP_07184608.1| cold shock domain protein CspD [Escherichia coli MS 69-1] gi|301024393|ref|ZP_07188080.1| cold shock domain protein CspD [Escherichia coli MS 196-1] gi|301051190|ref|ZP_07198020.1| cold shock domain protein CspD [Escherichia coli MS 185-1] gi|301305346|ref|ZP_07211441.1| cold shock domain protein CspD [Escherichia coli MS 124-1] gi|301328606|ref|ZP_07221667.1| cold shock domain protein CspD [Escherichia coli MS 78-1] gi|301646324|ref|ZP_07246212.1| cold shock domain protein CspD [Escherichia coli MS 146-1] gi|306812670|ref|ZP_07446863.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli NC101] gi|307137508|ref|ZP_07496864.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli H736] gi|307311732|ref|ZP_07591372.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|309783998|ref|ZP_07678642.1| cold shock domain protein CspD [Shigella dysenteriae 1617] gi|309795323|ref|ZP_07689741.1| cold shock domain protein CspD [Escherichia coli MS 145-7] gi|312969051|ref|ZP_07783258.1| cold shock domain protein CspD [Escherichia coli 2362-75] gi|312971007|ref|ZP_07785186.1| cold shock domain protein CspD [Escherichia coli 1827-70] gi|331641401|ref|ZP_08342536.1| cold shock domain protein CspD [Escherichia coli H736] gi|331646148|ref|ZP_08347251.1| cold shock domain protein CspD [Escherichia coli M605] gi|331651899|ref|ZP_08352918.1| cold shock domain protein CspD [Escherichia coli M718] gi|331656952|ref|ZP_08357914.1| cold shock domain protein CspD [Escherichia coli TA206] gi|331662294|ref|ZP_08363217.1| cold shock domain protein CspD [Escherichia coli TA143] gi|331667254|ref|ZP_08368119.1| cold shock domain protein CspD [Escherichia coli TA271] gi|331672417|ref|ZP_08373208.1| cold shock domain protein CspD [Escherichia coli TA280] gi|331676668|ref|ZP_08377364.1| cold shock domain protein CspD [Escherichia coli H591] gi|331682389|ref|ZP_08383008.1| cold shock domain protein CspD [Escherichia coli H299] gi|71154152|sp|P0A970|CSPD_ECO57 RecName: Full=Cold shock-like protein CspD; Short=CSP-D gi|71154153|sp|P0A969|CSPD_ECOL6 RecName: Full=Cold shock-like protein CspD; Short=CSP-D gi|71154154|sp|P0A968|CSPD_ECOLI RecName: Full=Cold shock-like protein CspD; Short=CSP-D gi|71154155|sp|P0A971|CSPD_SHIFL RecName: Full=Cold shock-like protein CspD; Short=CSP-D gi|12513910|gb|AAG55262.1|AE005269_6 cold shock protein [Escherichia coli O157:H7 str. EDL933] gi|1651400|dbj|BAA35599.1| cold shock protein homolog [Escherichia coli str. K12 substr. W3110] gi|1787107|gb|AAC73967.1| inhibitor of DNA replication, cold shock protein homolog [Escherichia coli str. K-12 substr. MG1655] gi|13360425|dbj|BAB34389.1| cold shock protein [Escherichia coli O157:H7 str. Sakai] gi|24051106|gb|AAN42473.1| cold shock protein [Shigella flexneri 2a str. 301] gi|30040613|gb|AAP16345.1| cold shock protein [Shigella flexneri 2a str. 2457T] gi|73854902|gb|AAZ87609.1| cold shock protein [Shigella sonnei Ss046] gi|81241745|gb|ABB62455.1| cold shock protein [Shigella dysenteriae Sd197] gi|81244778|gb|ABB65486.1| cold shock protein [Shigella boydii Sb227] gi|110342673|gb|ABG68910.1| cold shock-like protein CspD [Escherichia coli 536] gi|157066083|gb|ABV05338.1| cold shock domain protein CspD [Escherichia coli HS] gi|157079026|gb|ABV18734.1| cold shock domain protein CspD [Escherichia coli E24377A] gi|169755645|gb|ACA78344.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|169888374|gb|ACB02081.1| cold shock protein-like protein [Escherichia coli str. K-12 substr. DH10B] gi|170121821|gb|EDS90752.1| cold shock domain protein CspD [Escherichia albertii TW07627] gi|170521086|gb|ACB19264.1| cold shock domain protein CspD [Escherichia coli SMS-3-5] gi|187428781|gb|ACD08055.1| cold shock domain protein CspD [Shigella boydii CDC 3083-94] gi|187766991|gb|EDU30835.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4196] gi|188013698|gb|EDU51820.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4113] gi|188490617|gb|EDU65720.1| cold shock domain protein CspD [Escherichia coli 53638] gi|188998900|gb|EDU67886.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4076] gi|189354451|gb|EDU72870.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4401] gi|189359394|gb|EDU77813.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4486] gi|189361135|gb|EDU79554.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4486] gi|189365045|gb|EDU83461.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4501] gi|189371144|gb|EDU89560.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC869] gi|189375363|gb|EDU93779.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC508] gi|190902364|gb|EDV62102.1| cold shock domain protein CspD [Escherichia coli B7A] gi|190907668|gb|EDV67263.1| cold shock domain protein CspD [Escherichia coli F11] gi|192927726|gb|EDV82341.1| cold shock domain protein CspD [Escherichia coli E22] gi|192954918|gb|EDV85425.1| cold shock domain protein CspD [Escherichia coli E110019] gi|194413621|gb|EDX29902.1| cold shock domain protein CspD [Escherichia coli B171] gi|194418666|gb|EDX34753.1| cold shock domain protein CspD [Shigella dysenteriae 1012] gi|194422373|gb|EDX38373.1| cold shock domain protein CspD [Escherichia coli 101-1] gi|208727713|gb|EDZ77314.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4206] gi|208731437|gb|EDZ80125.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4045] gi|208737533|gb|EDZ85216.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4042] gi|209161631|gb|ACI39064.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4115] gi|209911388|dbj|BAG76462.1| cold shock-like protein [Escherichia coli SE11] gi|215264083|emb|CAS08425.1| cold shock protein homolog [Escherichia coli O127:H6 str. E2348/69] gi|217320489|gb|EEC28913.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. TW14588] gi|218351086|emb|CAU96790.1| cold shock protein homolog [Escherichia coli 55989] gi|218360234|emb|CAQ97784.1| cold shock protein homolog [Escherichia coli IAI1] gi|218364553|emb|CAR02237.1| cold shock protein homolog [Escherichia coli S88] gi|218370591|emb|CAR18398.1| cold shock protein homolog [Escherichia coli IAI39] gi|218426226|emb|CAR07051.1| cold shock protein homolog [Escherichia coli ED1a] gi|218431406|emb|CAR12284.1| cold shock protein homolog [Escherichia coli UMN026] gi|227838906|gb|EEJ49372.1| cold shock family protein CspD [Escherichia coli 83972] gi|238860165|gb|ACR62163.1| cold shock protein-like protein [Escherichia coli BW2952] gi|242376695|emb|CAQ31408.1| DNA replication inhibitor [Escherichia coli BL21(DE3)] gi|253325134|gb|ACT29736.1| cold-shock DNA-binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972896|gb|ACT38567.1| cold shock protein-like protein [Escherichia coli B str. REL606] gi|253977110|gb|ACT42780.1| cold shock protein-like protein [Escherichia coli BL21(DE3)] gi|254591481|gb|ACT70842.1| cold shock protein-like protein [Escherichia coli O157:H7 str. TW14359] gi|257752821|dbj|BAI24323.1| cold shock protein homolog CspD [Escherichia coli O26:H11 str. 11368] gi|257758278|dbj|BAI29775.1| cold shock protein homolog CspD [Escherichia coli O103:H2 str. 12009] gi|257763409|dbj|BAI34904.1| cold shock protein homolog CspD [Escherichia coli O111:H- str. 11128] gi|260449973|gb|ACX40395.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|281178015|dbj|BAI54345.1| cold shock-like protein [Escherichia coli SE15] gi|284920734|emb|CBG33797.1| cold shock-like protein CspD [Escherichia coli 042] gi|291428774|gb|EFF01799.1| cold shock-like protein cspD [Escherichia coli FVEC1412] gi|291469727|gb|EFF12211.1| cold shock domain-containing protein CspD [Escherichia coli B354] gi|294490756|gb|ADE89512.1| cold shock domain protein CspD [Escherichia coli IHE3034] gi|298279667|gb|EFI21175.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli FVEC1302] gi|299880400|gb|EFI88611.1| cold shock domain protein CspD [Escherichia coli MS 196-1] gi|300297211|gb|EFJ53596.1| cold shock domain protein CspD [Escherichia coli MS 185-1] gi|300305535|gb|EFJ60055.1| cold shock domain protein CspD [Escherichia coli MS 200-1] gi|300318602|gb|EFJ68386.1| cold shock domain protein CspD [Escherichia coli MS 175-1] gi|300360366|gb|EFJ76236.1| cold shock domain protein CspD [Escherichia coli MS 198-1] gi|300398657|gb|EFJ82195.1| cold shock domain protein CspD [Escherichia coli MS 69-1] gi|300405448|gb|EFJ88986.1| cold shock domain protein CspD [Escherichia coli MS 84-1] gi|300409635|gb|EFJ93173.1| cold shock domain protein CspD [Escherichia coli MS 45-1] gi|300411939|gb|EFJ95249.1| cold shock domain protein CspD [Escherichia coli MS 115-1] gi|300421095|gb|EFK04406.1| cold shock domain protein CspD [Escherichia coli MS 182-1] gi|300450523|gb|EFK14143.1| cold shock domain protein CspD [Escherichia coli MS 116-1] gi|300459089|gb|EFK22582.1| cold shock domain protein CspD [Escherichia coli MS 21-1] gi|300463586|gb|EFK27079.1| cold shock domain protein CspD [Escherichia coli MS 187-1] gi|300523818|gb|EFK44887.1| cold shock domain protein CspD [Escherichia coli MS 119-7] gi|300530370|gb|EFK51432.1| cold shock domain protein CspD [Escherichia coli MS 107-1] gi|300839364|gb|EFK67124.1| cold shock domain protein CspD [Escherichia coli MS 124-1] gi|300844998|gb|EFK72758.1| cold shock domain protein CspD [Escherichia coli MS 78-1] gi|301075427|gb|EFK90233.1| cold shock domain protein CspD [Escherichia coli MS 146-1] gi|305853433|gb|EFM53872.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli NC101] gi|306908287|gb|EFN38786.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|307552723|gb|ADN45498.1| cold shock-like protein CspD [Escherichia coli ABU 83972] gi|307627710|gb|ADN72014.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli UM146] gi|308120973|gb|EFO58235.1| cold shock domain protein CspD [Escherichia coli MS 145-7] gi|308928141|gb|EFP73604.1| cold shock domain protein CspD [Shigella dysenteriae 1617] gi|310336768|gb|EFQ01935.1| cold shock domain protein CspD [Escherichia coli 1827-70] gi|312286453|gb|EFR14366.1| cold shock domain protein CspD [Escherichia coli 2362-75] gi|312945398|gb|ADR26225.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O83:H1 str. NRG 857C] gi|313650207|gb|EFS14619.1| cold shock domain protein CspD [Shigella flexneri 2a str. 2457T] gi|315060166|gb|ADT74493.1| cold shock protein-like protein [Escherichia coli W] gi|315135529|dbj|BAJ42688.1| cold shock protein [Escherichia coli DH1] gi|315257918|gb|EFU37886.1| cold shock domain protein CspD [Escherichia coli MS 85-1] gi|315287286|gb|EFU46697.1| cold shock domain protein CspD [Escherichia coli MS 110-3] gi|315291074|gb|EFU50437.1| cold shock domain protein CspD [Escherichia coli MS 153-1] gi|315296656|gb|EFU55951.1| cold shock domain protein CspD [Escherichia coli MS 16-3] gi|315619192|gb|EFU99771.1| cold shock domain protein CspD [Escherichia coli 3431] gi|320175321|gb|EFW50427.1| Cold shock protein CspD [Shigella dysenteriae CDC 74-1112] gi|320180598|gb|EFW55527.1| Cold shock protein CspD [Shigella boydii ATCC 9905] gi|320183181|gb|EFW58039.1| Cold shock protein CspD [Shigella flexneri CDC 796-83] gi|320192634|gb|EFW67275.1| Cold shock protein CspD [Escherichia coli O157:H7 str. EC1212] gi|320196625|gb|EFW71248.1| Cold shock protein CspD [Escherichia coli WV_060327] gi|320202275|gb|EFW76846.1| Cold shock protein CspD [Escherichia coli EC4100B] gi|320637751|gb|EFX07543.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H7 str. G5101] gi|320642874|gb|EFX12075.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H- str. 493-89] gi|320648331|gb|EFX16986.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H- str. H 2687] gi|320654169|gb|EFX22237.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659793|gb|EFX27349.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O55:H7 str. USDA 5905] gi|320664263|gb|EFX31414.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H7 str. LSU-61] gi|323155746|gb|EFZ41915.1| cold shock domain protein CspD [Escherichia coli EPECa14] gi|323159505|gb|EFZ45485.1| cold shock domain protein CspD [Escherichia coli E128010] gi|323165817|gb|EFZ51603.1| cold shock domain protein CspD [Shigella sonnei 53G] gi|323172149|gb|EFZ57787.1| cold shock domain protein CspD [Escherichia coli LT-68] gi|323175498|gb|EFZ61093.1| cold shock domain protein CspD [Escherichia coli 1180] gi|323185155|gb|EFZ70520.1| cold shock domain protein CspD [Escherichia coli 1357] gi|323190702|gb|EFZ75971.1| cold shock domain protein CspD [Escherichia coli RN587/1] gi|323379277|gb|ADX51545.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323942797|gb|EGB38962.1| cold shock domain-containing protein CspD [Escherichia coli E482] gi|323947162|gb|EGB43172.1| cold shock domain-containing protein CspD [Escherichia coli H120] gi|323953416|gb|EGB49282.1| cold shock domain-containing protein CspD [Escherichia coli H252] gi|323958169|gb|EGB53878.1| cold shock domain-containing protein CspD [Escherichia coli H263] gi|323962993|gb|EGB58565.1| cold shock domain-containing protein CspD [Escherichia coli H489] gi|323967316|gb|EGB62739.1| cold shock domain-containing protein CspD [Escherichia coli M863] gi|323969635|gb|EGB64922.1| cold shock domain-containing protein CspD [Escherichia coli TA007] gi|323976733|gb|EGB71821.1| cold shock domain-containing protein CspD [Escherichia coli TW10509] gi|324009834|gb|EGB79053.1| cold shock domain protein CspD [Escherichia coli MS 57-2] gi|324012987|gb|EGB82206.1| cold shock domain protein CspD [Escherichia coli MS 60-1] gi|324019030|gb|EGB88249.1| cold shock domain protein CspD [Escherichia coli MS 117-3] gi|324116094|gb|EGC10018.1| cold shock domain-containing protein CspD [Escherichia coli E1167] gi|326346202|gb|EGD69940.1| Cold shock protein CspD [Escherichia coli O157:H7 str. 1044] gi|327253668|gb|EGE65297.1| cold shock domain protein CspD [Escherichia coli STEC_7v] gi|330910662|gb|EGH39172.1| cold shock protein CspD [Escherichia coli AA86] gi|331038199|gb|EGI10419.1| cold shock domain protein CspD [Escherichia coli H736] gi|331044900|gb|EGI17027.1| cold shock domain protein CspD [Escherichia coli M605] gi|331050177|gb|EGI22235.1| cold shock domain protein CspD [Escherichia coli M718] gi|331055200|gb|EGI27209.1| cold shock domain protein CspD [Escherichia coli TA206] gi|331060716|gb|EGI32680.1| cold shock domain protein CspD [Escherichia coli TA143] gi|331065610|gb|EGI37503.1| cold shock domain protein CspD [Escherichia coli TA271] gi|331070612|gb|EGI41976.1| cold shock domain protein CspD [Escherichia coli TA280] gi|331075357|gb|EGI46655.1| cold shock domain protein CspD [Escherichia coli H591] gi|331080020|gb|EGI51199.1| cold shock domain protein CspD [Escherichia coli H299] gi|332088860|gb|EGI93972.1| cold shock domain protein CspD [Shigella boydii 5216-82] gi|332091104|gb|EGI96194.1| cold shock domain protein CspD [Shigella dysenteriae 155-74] gi|332097053|gb|EGJ02036.1| cold shock domain protein CspD [Shigella boydii 3594-74] gi|332342268|gb|AEE55602.1| cold shock domain protein CspD [Escherichia coli UMNK88] gi|332759795|gb|EGJ90098.1| cold shock domain protein CspD [Shigella flexneri 4343-70] gi|332760573|gb|EGJ90862.1| cold shock domain protein CspD [Shigella flexneri 2747-71] gi|332762936|gb|EGJ93186.1| cold shock domain protein CspD [Shigella flexneri K-671] gi|332768058|gb|EGJ98244.1| cold shock domain protein CspD [Shigella flexneri 2930-71] gi|333006683|gb|EGK26182.1| cold shock domain protein CspD [Shigella flexneri VA-6] gi|333006920|gb|EGK26415.1| cold shock domain protein CspD [Shigella flexneri K-218] gi|333008808|gb|EGK28268.1| cold shock domain protein CspD [Shigella flexneri K-272] gi|333020115|gb|EGK39385.1| cold shock domain protein CspD [Shigella flexneri K-227] gi|333021002|gb|EGK40260.1| cold shock domain protein CspD [Shigella flexneri K-304] Length = 74 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQ 54 >gi|331014236|gb|EGH94292.1| cold shock protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 41 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 4/45 (8%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V Sbjct: 1 KWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQV 41 >gi|225390644|ref|ZP_03760368.1| hypothetical protein CLOSTASPAR_04399 [Clostridium asparagiforme DSM 15981] gi|225043262|gb|EEG53508.1| hypothetical protein CLOSTASPAR_04399 [Clostridium asparagiforme DSM 15981] Length = 65 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI S E G+DVF+H S + G +L EG V +D V N A G Sbjct: 2 KGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLDEGAAVEFDVV-NGAKG 56 Query: 64 KYSAENLKL 72 + KL Sbjct: 57 PQATNVTKL 65 >gi|170690994|ref|ZP_02882160.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] gi|307726662|ref|YP_003909875.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1003] gi|323529135|ref|YP_004231287.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1001] gi|170144243|gb|EDT12405.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] gi|307587187|gb|ADN60584.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003] gi|323386137|gb|ADX58227.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G+D+F H S V +G +L E Q V+++ V+ GK Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEVQGSGFKSLQENQKVSFE-VKQGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|160901501|ref|YP_001567082.1| cold-shock DNA-binding domain-containing protein [Petrotoga mobilis SJ95] gi|160359145|gb|ABX30759.1| cold-shock DNA-binding domain protein [Petrotoga mobilis SJ95] Length = 65 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +KW++ KGYGFIT E G+DVF+H SAV G L E Q V ++ V+ D Sbjct: 2 KGKVKWFDSKKGYGFIT----GEDGNDVFVHFSAVQMDGYRKLEEDQEVEFEVVEGD 54 >gi|149196184|ref|ZP_01873239.1| stress protein, member of the CspA-family [Lentisphaera araneosa HTCC2155] gi|149140445|gb|EDM28843.1| stress protein, member of the CspA-family [Lentisphaera araneosa HTCC2155] Length = 68 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G +KW+N KG+GFI +G G DVF+H SA+ G L EGQ V +D Sbjct: 5 QGRVKWFNETKGFGFIEQDG----GKDVFVHFSAIQGQGFKTLEEGQKVEFD 52 >gi|90410344|ref|ZP_01218360.1| Putative cold shock-like protein cspG [Photobacterium profundum 3TCK] gi|90328585|gb|EAS44869.1| Putative cold shock-like protein cspG [Photobacterium profundum 3TCK] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFIT + G DVF+H A+ G L EGQ V+Y+ Q Sbjct: 6 GTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLAEGQKVSYETEQ 56 >gi|153950481|ref|YP_001399368.1| cold shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|152961976|gb|ABS49437.1| cold shock DNA-binding domain protein [Yersinia pseudotuberculosis IP 31758] Length = 70 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFITP + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 SAVNVIAL 70 >gi|330813537|ref|YP_004357776.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter sp. IMCC9063] gi|327486632|gb|AEA81037.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter sp. IMCC9063] Length = 68 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N KG+GFI E + DVF+H SAV +AGL L EG + +D V++ Sbjct: 1 MSLKGKVKWFNEKKGFGFIEREDGKK---DVFVHISAVQAAGLDYLDEGSSINFD-VEDG 56 Query: 61 ANGKYSAENLK 71 G SA NLK Sbjct: 57 PKGP-SAVNLK 66 >gi|307825191|ref|ZP_07655411.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307733647|gb|EFO04504.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 70 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E G DVF+H S ++S G +LT+GQ V ++ Q Sbjct: 8 GTVKWFNASKGFGFI----EQEKGPDVFVHYSNISSTGFKSLTDGQKVKFNVSQ 57 >gi|254429192|ref|ZP_05042899.1| 'Cold-shock' DNA-binding domain protein [Alcanivorax sp. DG881] gi|196195361|gb|EDX90320.1| 'Cold-shock' DNA-binding domain protein [Alcanivorax sp. DG881] Length = 202 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 4/58 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+NP+KG+GFI T+SG+++F+H AV + G +L G V +D +D Sbjct: 137 QRGEVKWFNPNKGFGFIL----TDSGEELFVHFKAVQNGGRRSLRTGTKVRFDTRMSD 190 >gi|158523075|ref|YP_001530945.1| cold-shock DNA-binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511901|gb|ABW68868.1| cold-shock DNA-binding domain protein [Desulfococcus oleovorans Hxd3] Length = 66 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI ++G DVF+H SA+ ++G L EG VT+D V D Sbjct: 4 GIVKWFNDSKGFGFI----EQDNGPDVFVHHSAINASGFKTLNEGDRVTFDIV--DGKKG 57 Query: 65 YSAENLKLV 73 +A N+ +V Sbjct: 58 PAAANVTVV 66 >gi|29830475|ref|NP_825109.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29607587|dbj|BAC71644.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 68 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFI +G G DVF+H SA+ G L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GADVFVHYSAIQMDGYRTLEEGQRVDFEISQ 53 >gi|317493995|ref|ZP_07952411.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917768|gb|EFV39111.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 70 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI+P + DVF+H SA+ S +L EGQ V + ++N A G Sbjct: 7 GLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSDSYKSLDEGQSVEFT-IENGAKGP 62 Query: 65 YSAENLKL 72 +A + L Sbjct: 63 AAANVVAL 70 >gi|70731246|ref|YP_260987.1| cold shock domain-containing protein CspD [Pseudomonas fluorescens Pf-5] gi|68345545|gb|AAY93151.1| cold shock domain protein CspD [Pseudomonas fluorescens Pf-5] Length = 85 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI EG T DD+F H SA+ G L GQ V+++ +Q Sbjct: 4 GKVKWFNNAKGYGFINEEGKT---DDLFAHYSAIDMDGYKTLKAGQAVSFEIIQ 54 >gi|54309148|ref|YP_130168.1| putative cold shock-like protein cspG [Photobacterium profundum SS9] gi|46913580|emb|CAG20366.1| Putative cold shock-like protein cspG [Photobacterium profundum SS9] Length = 82 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFIT + G DVF+H A+ G L EGQ V+Y+ Q Sbjct: 19 GTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLAEGQKVSYETEQ 69 >gi|228919954|ref|ZP_04083308.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228938352|ref|ZP_04100963.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971230|ref|ZP_04131859.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977839|ref|ZP_04138221.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|228781857|gb|EEM30053.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|228788465|gb|EEM36415.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821298|gb|EEM67312.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228839667|gb|EEM84954.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|326938860|gb|AEA14756.1| cold shock protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G G+DVF+H SA+ + G +L EGQ V+++ D Sbjct: 1 MAVTGQVKWFNNEKGFGFIEVPG----GNDVFVHFSAIETDGFKSLEEGQKVSFEI--ED 54 Query: 61 ANGKYSAENL 70 N A+N+ Sbjct: 55 GNRGPQAKNV 64 >gi|90019067|gb|ABD84187.1| unknown [Yersinia sp. MH-1] Length = 77 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFITP + G DVF+H SA+ S L EGQ V + ++N A G Sbjct: 14 GLVKWFDAGKGFGFITP---ADGGKDVFVHFSAIQSNDFKTLDEGQRVEFS-IENGAKGP 69 Query: 65 YSAENLKL 72 +A + L Sbjct: 70 SAANVVAL 77 >gi|18398546|ref|NP_565427.1| cold-shock DNA-binding family protein [Arabidopsis thaliana] gi|14334920|gb|AAK59638.1| putative glycine-rich, zinc-finger DNA-binding protein [Arabidopsis thaliana] gi|17104541|gb|AAL34159.1| putative glycine-rich, zinc-finger DNA-binding protein [Arabidopsis thaliana] gi|148726892|dbj|BAF63841.1| cold shock domain protein 3 [Arabidopsis thaliana] gi|330251603|gb|AEC06697.1| cold shock domain protein 3 [Arabidopsis thaliana] Length = 301 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G + W++ KGYGFITP+ + G+++F+H+S++ S G +LT G+ V Y+ + ++GK Sbjct: 13 GKVSWFSDGKGYGFITPD---DGGEELFVHQSSIVSDGFRSLTLGESVEYE-IALGSDGK 68 Query: 65 YSA 67 A Sbjct: 69 TKA 71 >gi|283785560|ref|YP_003365425.1| cold shock-like protein CspC [Citrobacter rodentium ICC168] gi|282949014|emb|CBG88617.1| cold shock-like protein CspC [Citrobacter rodentium ICC168] Length = 71 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 7 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 62 >gi|223986942|ref|ZP_03636915.1| hypothetical protein HOLDEFILI_04238 [Holdemania filiformis DSM 12042] gi|223961089|gb|EEF65628.1| hypothetical protein HOLDEFILI_04238 [Holdemania filiformis DSM 12042] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N DKGYGFIT + + D+F+H S + G +L EGQ V+++ V+NDA Sbjct: 4 GKVKWFNGDKGYGFITDD---QGQGDIFVHFSGINGNGYKSLEEGQKVSFE-VENDA 56 >gi|126642302|ref|YP_001085286.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978] gi|169633000|ref|YP_001706736.1| putative cold shock protein [Acinetobacter baumannii SDF] gi|169795349|ref|YP_001713142.1| putative cold shock protein [Acinetobacter baumannii AYE] gi|184158782|ref|YP_001847121.1| cold shock protein [Acinetobacter baumannii ACICU] gi|213158664|ref|YP_002319962.1| cold-shock domain protein [Acinetobacter baumannii AB0057] gi|215482883|ref|YP_002325086.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294] gi|226952983|ref|ZP_03823447.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|239502878|ref|ZP_04662188.1| Cold shock-like protein cspG [Acinetobacter baumannii AB900] gi|260550926|ref|ZP_05825132.1| cold-shock domain-containing protein [Acinetobacter sp. RUH2624] gi|260554463|ref|ZP_05826684.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] gi|262278446|ref|ZP_06056231.1| cold shock domain-containing protein CspD [Acinetobacter calcoaceticus RUH2202] gi|293609548|ref|ZP_06691850.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|294650565|ref|ZP_06727922.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC 19194] gi|299769391|ref|YP_003731417.1| Cold shock-like protein cspG [Acinetobacter sp. DR1] gi|301348039|ref|ZP_07228780.1| Cold shock-like protein cspG [Acinetobacter baumannii AB056] gi|301510877|ref|ZP_07236114.1| Cold shock-like protein cspG [Acinetobacter baumannii AB058] gi|301596796|ref|ZP_07241804.1| Cold shock-like protein cspG [Acinetobacter baumannii AB059] gi|332850461|ref|ZP_08432781.1| cold shock-like protein CspG [Acinetobacter baumannii 6013150] gi|332871913|ref|ZP_08440325.1| cold shock-like protein CspG [Acinetobacter baumannii 6013113] gi|332875151|ref|ZP_08442984.1| cold shock-like protein CspG [Acinetobacter baumannii 6014059] gi|126388186|gb|ABO12684.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978] gi|169148276|emb|CAM86141.1| putative cold shock protein [Acinetobacter baumannii AYE] gi|169151792|emb|CAP00613.1| putative cold shock protein [Acinetobacter baumannii] gi|183210376|gb|ACC57774.1| Cold shock protein [Acinetobacter baumannii ACICU] gi|213057824|gb|ACJ42726.1| cold-shock domain protein [Acinetobacter baumannii AB0057] gi|213988402|gb|ACJ58701.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294] gi|226836304|gb|EEH68687.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|260406053|gb|EEW99539.1| cold-shock domain-containing protein [Acinetobacter sp. RUH2624] gi|260411005|gb|EEX04302.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] gi|262258797|gb|EEY77530.1| cold shock domain-containing protein CspD [Acinetobacter calcoaceticus RUH2202] gi|292823562|gb|EFF82408.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC 19194] gi|292828000|gb|EFF86363.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|298699479|gb|ADI90044.1| Cold shock-like protein cspG [Acinetobacter sp. DR1] gi|322507405|gb|ADX02859.1| cold shock protein [Acinetobacter baumannii 1656-2] gi|323518697|gb|ADX93078.1| cold shock protein [Acinetobacter baumannii TCDC-AB0715] gi|325122817|gb|ADY82340.1| putative cold shock protein [Acinetobacter calcoaceticus PHEA-2] gi|332730732|gb|EGJ62043.1| cold shock-like protein CspG [Acinetobacter baumannii 6013150] gi|332731127|gb|EGJ62428.1| cold shock-like protein CspG [Acinetobacter baumannii 6013113] gi|332736595|gb|EGJ67589.1| cold shock-like protein CspG [Acinetobacter baumannii 6014059] Length = 70 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI G GDDVF+H A+ G +L +GQ V + VQ Sbjct: 6 QGVVKWFNDTKGFGFIQRNG----GDDVFVHFRAIVGDGHRSLRDGQRVEFSVVQGQKG- 60 Query: 64 KYSAENLK 71 + AEN++ Sbjct: 61 -FQAENVQ 67 >gi|187925980|ref|YP_001892325.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|241665465|ref|YP_002983824.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] gi|187727734|gb|ACD28898.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|240867492|gb|ACS65152.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G++KW+N KG+GFITP+G G D+F H S + +G L +GQ V+++ Q Sbjct: 4 GTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQG 55 >gi|28901144|ref|NP_800799.1| cold shock transcriptional regulator CspA [Vibrio parahaemolyticus RIMD 2210633] gi|153838855|ref|ZP_01991522.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus AQ3810] gi|260362706|ref|ZP_05775575.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus K5030] gi|260879992|ref|ZP_05892347.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AN-5034] gi|260894667|ref|ZP_05903163.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus Peru-466] gi|260900524|ref|ZP_05908919.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AQ4037] gi|28809657|dbj|BAC62632.1| cold shock transcriptional regulator CspA [Vibrio parahaemolyticus RIMD 2210633] gi|149747683|gb|EDM58593.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus AQ3810] gi|308086443|gb|EFO36138.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus Peru-466] gi|308091849|gb|EFO41544.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AN-5034] gi|308107098|gb|EFO44638.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AQ4037] gi|308112226|gb|EFO49766.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus K5030] gi|328471023|gb|EGF41934.1| cold shock transcriptional regulator CspA [Vibrio parahaemolyticus 10329] Length = 70 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GF++ + G DVF+H +A+ + G LTEGQ V+++ Q GK Sbjct: 7 GSVKWFNETKGFGFLSQD---NGGQDVFVHFNAIVADGFKTLTEGQKVSFNVEQ----GK 59 Query: 65 YSAENLKLVP 74 + ++ P Sbjct: 60 KGPQATEVTP 69 >gi|295397227|ref|ZP_06807326.1| cold shock protein CspA [Aerococcus viridans ATCC 11563] gi|294974536|gb|EFG50264.1| cold shock protein CspA [Aerococcus viridans ATCC 11563] Length = 66 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G +KW+N +KG+GFI G+ DDVF+H +A+ G +L EGQ V+++ Sbjct: 1 MEQGKVKWFNAEKGFGFIERSGA----DDVFVHFTAIQGDGFKSLEEGQEVSFE 50 >gi|331002349|ref|ZP_08325867.1| cold shock-like protein cspLB [Lachnospiraceae oral taxon 107 str. F0167] gi|330410165|gb|EGG89599.1| cold shock-like protein cspLB [Lachnospiraceae oral taxon 107 str. F0167] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++RG++KW+N KGYGFI+ EG G DVF+H S + G L EG V YD + Sbjct: 1 MNRGTVKWFNNQKGYGFISDEG----GSDVFVHFSDLNMEGFKTLDEGISVEYDLTE 53 >gi|149195695|ref|ZP_01872752.1| putative cold-shock DNA-binding domain protein [Lentisphaera araneosa HTCC2155] gi|149141157|gb|EDM29553.1| putative cold-shock DNA-binding domain protein [Lentisphaera araneosa HTCC2155] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 5/58 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+ DKG+GFITP SGD D+F+H + + + G +L EGQ V Y+ Q Sbjct: 1 METGTVKWFADDKGFGFITP----NSGDKDLFVHHTEIQTGGFKSLAEGQKVEYEVGQ 54 >gi|157369958|ref|YP_001477947.1| cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] gi|238753509|ref|ZP_04614872.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473] gi|157321722|gb|ABV40819.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] gi|238708462|gb|EEQ00817.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y V++ G Sbjct: 6 GQVKWFNESKGFGFIE---QNDGGKDVFVHFSAIATDGFKTLAEGQRVEYT-VEDSPRGP 61 Query: 65 YSAENLKL 72 +A + L Sbjct: 62 AAANVVAL 69 >gi|222054634|ref|YP_002536996.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] gi|221563923|gb|ACM19895.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] Length = 66 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI ++G+DVF+H SA+ G +L EG+ V++D V N G Sbjct: 3 QGKVKWFNDAKGFGFI----EQDNGEDVFVHFSAIVGEGFKSLAEGEAVSFD-VTNGPKG 57 Query: 64 KYSAENLKLV 73 A N+K + Sbjct: 58 -LQAANVKKI 66 >gi|260905033|ref|ZP_05913355.1| cold-shock DNA-binding domain protein [Brevibacterium linens BL2] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N +KG+GFI P+ + DVF H SA+ S G L EGQ V +D Sbjct: 4 GTVKWFNSEKGFGFIQPD---DGSADVFTHFSAIESTGYRELAEGQNVEFD 51 >gi|78065067|ref|YP_367836.1| cold-shock DNA-binding protein family protein [Burkholderia sp. 383] gi|107024146|ref|YP_622473.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia AU 1054] gi|115350462|ref|YP_772301.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria AMMD] gi|116688527|ref|YP_834150.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia HI2424] gi|134294597|ref|YP_001118332.1| cold-shock DNA-binding protein family protein [Burkholderia vietnamiensis G4] gi|170701451|ref|ZP_02892407.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|170731829|ref|YP_001763776.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|171319075|ref|ZP_02908199.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|172059495|ref|YP_001807147.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria MC40-6] gi|206558773|ref|YP_002229533.1| cold shock-like protein CspD [Burkholderia cenocepacia J2315] gi|254246471|ref|ZP_04939792.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184] gi|254253382|ref|ZP_04946700.1| Cold-shock protein [Burkholderia dolosa AUO158] gi|77965812|gb|ABB07192.1| cold-shock DNA-binding protein family [Burkholderia sp. 383] gi|105894335|gb|ABF77500.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia AU 1054] gi|115280450|gb|ABI85967.1| cold-shock DNA-binding protein family [Burkholderia ambifaria AMMD] gi|116646616|gb|ABK07257.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia HI2424] gi|124871247|gb|EAY62963.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184] gi|124895991|gb|EAY69871.1| Cold-shock protein [Burkholderia dolosa AUO158] gi|134137754|gb|ABO53497.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis G4] gi|169815071|gb|ACA89654.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia MC0-3] gi|170133648|gb|EDT02020.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171095714|gb|EDT40670.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|171992012|gb|ACB62931.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MC40-6] gi|198034810|emb|CAR50678.1| cold shock-like protein CspD [Burkholderia cenocepacia J2315] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITPEG GDD+F H S + G L E Q V ++ Sbjct: 4 GTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVEGFKTLQENQKVEFE 51 >gi|326204316|ref|ZP_08194175.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens DSM 2782] gi|325985591|gb|EGD46428.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens DSM 2782] Length = 66 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N +KG+GFI +G G+DVF+H SA+ G L EG V +D V+ Sbjct: 1 MEKGRVKWFNAEKGFGFIERDG----GNDVFVHFSAINMDGYKTLEEGSEVVFDVVE 53 >gi|253990173|ref|YP_003041529.1| cold shock-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781623|emb|CAQ84786.1| cold shock-like protein cspc (csp-c) [Photorhabdus asymbiotica] Length = 70 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + +++ A G Sbjct: 6 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFT-IESGAKG 61 Query: 64 KYSA 67 +A Sbjct: 62 PAAA 65 >gi|103486965|ref|YP_616526.1| cold-shock DNA-binding domain-containing protein [Sphingopyxis alaskensis RB2256] gi|98977042|gb|ABF53193.1| cold-shock DNA-binding protein family [Sphingopyxis alaskensis RB2256] Length = 90 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++K++N DKGYGFI E SGD F+H +AV +AG+ L + Q V+Y+ ++ Sbjct: 22 LMAIGTVKFFNNDKGYGFI--ENEDGSGDS-FVHITAVQAAGMDTLNKEQRVSYE-LETG 77 Query: 61 ANGKYSAENLK 71 NGK SA NL+ Sbjct: 78 KNGKVSAINLQ 88 >gi|322436511|ref|YP_004218723.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321164238|gb|ADW69943.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 70 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++G +KW+N KGYGF+ +G G DVF H SAV + G +L EG V +D + D+ Sbjct: 4 YKGQVKWFNNAKGYGFLGRDG----GSDVFCHYSAVQTDGYKSLKEGDEVEFDIIDGDS- 58 Query: 63 GKYSAENL 70 GK A+ + Sbjct: 59 GKPQADKV 66 >gi|300786398|ref|YP_003766689.1| cold shock protein CspA [Amycolatopsis mediterranei U32] gi|299795912|gb|ADJ46287.1| cold shock protein CspA [Amycolatopsis mediterranei U32] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +GS+KW+N +KG+GFI +G G DVF+H S + +G +L EGQ V ++ Q Sbjct: 3 QGSVKWFNGEKGFGFIAQDG---GGPDVFVHYSEIQGSGFKSLDEGQRVEFEIGQG 55 >gi|238919617|ref|YP_002933132.1| cold shock-like protein CspC [Edwardsiella ictaluri 93-146] gi|269138905|ref|YP_003295606.1| cold shock protein [Edwardsiella tarda EIB202] gi|294636002|ref|ZP_06714441.1| conserved domain protein [Edwardsiella tarda ATCC 23685] gi|317492183|ref|ZP_07950613.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|238869186|gb|ACR68897.1| conserved domain protein [Edwardsiella ictaluri 93-146] gi|267984566|gb|ACY84395.1| cold shock protein [Edwardsiella tarda EIB202] gi|291090679|gb|EFE23240.1| conserved domain protein [Edwardsiella tarda ATCC 23685] gi|304558891|gb|ADM41555.1| Cold shock protein CspC [Edwardsiella tarda FL6-60] gi|316919888|gb|EFV41217.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 5 KGQVKWFNEAKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQHVEFE-IQDGQKG 60 Query: 64 KYSAENLKLV 73 SA N+ + Sbjct: 61 P-SAVNVTAI 69 >gi|161526063|ref|YP_001581075.1| cold-shock DNA-binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|167587642|ref|ZP_02380030.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu] gi|189349222|ref|YP_001944850.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|221201715|ref|ZP_03574753.1| cold-shock domain family protein [Burkholderia multivorans CGD2M] gi|221207210|ref|ZP_03580220.1| cold-shock domain family protein [Burkholderia multivorans CGD2] gi|221213338|ref|ZP_03586313.1| cold-shock domain family protein [Burkholderia multivorans CGD1] gi|160343492|gb|ABX16578.1| cold-shock DNA-binding domain protein [Burkholderia multivorans ATCC 17616] gi|189333244|dbj|BAG42314.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|221166790|gb|EED99261.1| cold-shock domain family protein [Burkholderia multivorans CGD1] gi|221172798|gb|EEE05235.1| cold-shock domain family protein [Burkholderia multivorans CGD2] gi|221178531|gb|EEE10940.1| cold-shock domain family protein [Burkholderia multivorans CGD2M] gi|325518815|gb|EGC98394.1| CspA family cold shock protein [Burkholderia sp. TJI49] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITPEG GDD+F H S + G L E Q V ++ Sbjct: 4 GTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVEGFKTLQENQKVEFE 51 >gi|289628626|ref|ZP_06461580.1| cold-shock protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651512|ref|ZP_06482855.1| cold-shock protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330868605|gb|EGH03314.1| cold-shock protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 202 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 136 GTVKWFNASKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 191 QAEDVIAALPR 201 >gi|157369915|ref|YP_001477904.1| cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] gi|157321679|gb|ABV40776.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] Length = 73 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V++D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVSFDVHQ 54 >gi|320161036|ref|YP_004174260.1| cold shock protein [Anaerolinea thermophila UNI-1] gi|319994889|dbj|BAJ63660.1| cold shock protein [Anaerolinea thermophila UNI-1] Length = 72 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 6/74 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + G++KW+N KGYGFI + + +GDDVF+H SA+ G L EGQ V ++ Q Sbjct: 5 YTGTVKWFNATKGYGFIGRDDN--AGDDVFVHFSAIQMEGYRTLKEGQKVEFEIEQ---- 58 Query: 63 GKYSAENLKLVPKS 76 G + ++VP S Sbjct: 59 GPKGLQAAQVVPLS 72 >gi|270159744|ref|ZP_06188400.1| cold shock protein CspC [Legionella longbeachae D-4968] gi|289165485|ref|YP_003455623.1| DNA-binding transcriptional repressor [Legionella longbeachae NSW150] gi|269988083|gb|EEZ94338.1| cold shock protein CspC [Legionella longbeachae D-4968] gi|288858658|emb|CBJ12553.1| DNA-binding transcriptional repressor [Legionella longbeachae NSW150] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI E G DVF H +AS+G LTEGQ V + Q Sbjct: 7 GVVKWFNETKGFGFI----EQECGPDVFAHFKEIASSGFRTLTEGQRVKFIVTQ 56 >gi|153955498|ref|YP_001396263.1| hypothetical protein CKL_2880 [Clostridium kluyveri DSM 555] gi|219855901|ref|YP_002473023.1| hypothetical protein CKR_2558 [Clostridium kluyveri NBRC 12016] gi|146348356|gb|EDK34892.1| Hypothetical protein CKL_2880 [Clostridium kluyveri DSM 555] gi|219569625|dbj|BAH07609.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 65 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N +KG+GFIT E G DVF H S + S G L EGQ V++D Sbjct: 3 GTVKWFNGNKGFGFITG----EDGKDVFAHFSQINSEGYKTLEEGQKVSFD 49 >gi|189425683|ref|YP_001952860.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ] gi|189421942|gb|ACD96340.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ] Length = 66 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GF+ EG G+DVF+H SA+ S G +L EG V ++ V+ Sbjct: 4 GRVKWFNDSKGFGFLEQEG----GEDVFVHFSAINSNGFKSLAEGDTVEFEVVK 53 >gi|146312144|ref|YP_001177218.1| cold-shock DNA-binding protein family protein [Enterobacter sp. 638] gi|145319020|gb|ABP61167.1| cold-shock DNA-binding protein family [Enterobacter sp. 638] Length = 70 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFITP + DVF+H SA+ S+ L EGQ V + ++N A G Sbjct: 7 GLVKWFNSEKGFGFITP---ADGSKDVFVHFSAIQSSDYKTLDEGQKVEFS-IENGAKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|330936728|gb|EGH40913.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 105 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + + D Sbjct: 39 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRD 90 >gi|307729849|ref|YP_003907073.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1003] gi|323525902|ref|YP_004228055.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1001] gi|307584384|gb|ADN57782.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003] gi|323382904|gb|ADX54995.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G+D+F H S + + G +L E Q V+++ V+ GK Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRAEGFKSLQENQKVSFE-VKQGPKGK 59 Query: 65 YSAE 68 +A+ Sbjct: 60 QAAD 63 >gi|270261164|ref|ZP_06189437.1| hypothetical protein SOD_a03890 [Serratia odorifera 4Rx13] gi|270044648|gb|EFA17739.1| hypothetical protein SOD_a03890 [Serratia odorifera 4Rx13] Length = 73 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V++D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVSFDVHQ 54 >gi|149909599|ref|ZP_01898252.1| cold shock-like protein [Moritella sp. PE36] gi|149807303|gb|EDM67256.1| cold shock-like protein [Moritella sp. PE36] Length = 73 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI PE GDDVF H S + G L GQLV Y+ Sbjct: 4 GTVKWFNNAKGFGFICPE---SGGDDVFAHFSIIQMDGYRTLKAGQLVDYE 51 >gi|91777357|ref|YP_552565.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|296159608|ref|ZP_06842431.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|91690017|gb|ABE33215.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] gi|158187225|gb|ABW22844.1| hypothetical protein [Burkholderia sp. NCIMB 10467] gi|295890052|gb|EFG69847.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N KG+GFITP+ + GDD+F H S ++ G L E Q V+++ Q Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGDGFKTLAENQKVSFETKQ 54 >gi|251789584|ref|YP_003004305.1| cold shock-like protein CspC [Dickeya zeae Ech1591] gi|271500505|ref|YP_003333530.1| cold-shock DNA-binding domain-containing protein [Dickeya dadantii Ech586] gi|307131152|ref|YP_003883168.1| stress protein, member of the CspA-family [Dickeya dadantii 3937] gi|247538205|gb|ACT06826.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591] gi|270344060|gb|ACZ76825.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586] gi|306528681|gb|ADM98611.1| stress protein, member of the CspA-family [Dickeya dadantii 3937] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60 >gi|167584235|ref|ZP_02376623.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ + GDD+F H S + G L E Q V+Y+ Sbjct: 4 GTVKWFNETKGFGFITPD---KGGDDLFAHFSEIRGTGFKTLAENQKVSYE 51 >gi|56477977|ref|YP_159566.1| putative cold-shock protein [Aromatoleum aromaticum EbN1] gi|56314020|emb|CAI08665.1| putative cold-shock protein [Aromatoleum aromaticum EbN1] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ +E D+F H SA+ G L EG+ V+++ Q Sbjct: 4 GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMNGFKTLKEGEKVSFEVTQ 54 >gi|325106571|ref|YP_004267647.1| putative cold-shock protein C [Staphylococcus simulans bv. staphylolyticus] gi|324033744|gb|ADY16745.1| putative cold-shock protein C [Staphylococcus simulans bv. staphylolyticus] Length = 66 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 4/56 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 ++ G++KW+N +KG+GFI E+G DVF+H S +A G +L +GQ V +D V Sbjct: 1 MNNGTVKWFNSEKGFGFI----ERENGSDVFVHFSGIAGEGYKSLEDGQNVDFDIV 52 >gi|322381500|ref|ZP_08055480.1| cold-shock protein molecular chaperone RNA-helicase co-factor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|322382685|ref|ZP_08056543.1| cold-shock protein molecular chaperone-like protein/RNA-helicase-like protein co-factor [Paenibacillus larvae subsp. larvae B-3650] gi|321153346|gb|EFX45776.1| cold-shock protein molecular chaperone-like protein/RNA-helicase-like protein co-factor [Paenibacillus larvae subsp. larvae B-3650] gi|321154542|gb|EFX46838.1| cold-shock protein molecular chaperone RNA-helicase co-factor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 68 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E G+DVF+H S++ G +L EGQ V ++ Q Sbjct: 1 MQTGTVKWFNAEKGFGFI----EIEQGNDVFVHFSSIEGDGYKSLDEGQRVQFNVTQ--G 54 Query: 62 NGKYSAENLKLV 73 N AEN+ V Sbjct: 55 NRGPQAENVSKV 66 >gi|320540284|ref|ZP_08039936.1| putative stress protein, member of the CspA-family [Serratia symbiotica str. Tucson] gi|320029604|gb|EFW11631.1| putative stress protein, member of the CspA-family [Serratia symbiotica str. Tucson] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60 >gi|257453238|ref|ZP_05618537.1| cold-shock domain-contain protein [Fusobacterium sp. 3_1_5R] gi|257467171|ref|ZP_05631482.1| cold-shock domain-contain protein [Fusobacterium gonidiaformans ATCC 25563] gi|315918302|ref|ZP_07914542.1| cold-shock protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059772|ref|ZP_07924257.1| cold-shock protein [Fusobacterium sp. 3_1_5R] gi|313685448|gb|EFS22283.1| cold-shock protein [Fusobacterium sp. 3_1_5R] gi|313692177|gb|EFS29012.1| cold-shock protein [Fusobacterium gonidiaformans ATCC 25563] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFIT E + D F+H S +A G +L EGQ VT++ Sbjct: 3 KGTVKWFNNEKGFGFITGEDTV----DYFVHFSGIAGEGFKSLEEGQAVTFE 50 >gi|254785982|ref|YP_003073411.1| cspA cold-shock DNA-binding domain-containing protein [Teredinibacter turnerae T7901] gi|237687500|gb|ACR14764.1| cspA cold-shock DNA-binding domain protein [Teredinibacter turnerae T7901] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KGYGFI+ EG G D+F+H S + +G L EGQ VT+ Sbjct: 7 GTVKWFNESKGYGFISREG----GADLFVHFSNIIGSGFKTLKEGQAVTF 52 >gi|226953337|ref|ZP_03823801.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|294651960|ref|ZP_06729249.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194] gi|226835963|gb|EEH68346.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|292822192|gb|EFF81106.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +SG DVF H S +A++G L EGQ V++ Q G+ Sbjct: 7 GTVKWFNETKGFGFI----QQQSGPDVFAHFSEIANSGFKTLYEGQQVSFSVAQ----GQ 58 Query: 65 YSAENLKLVP 74 + +VP Sbjct: 59 KGPNAVNIVP 68 >gi|213969178|ref|ZP_03397317.1| Cold-shock DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301384826|ref|ZP_07233244.1| cold-shock protein [Pseudomonas syringae pv. tomato Max13] gi|302130616|ref|ZP_07256606.1| cold-shock protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926176|gb|EEB59732.1| Cold-shock DNA-binding protein [Pseudomonas syringae pv. tomato T1] Length = 202 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 191 QAEDVIAALPR 201 >gi|118470416|ref|YP_884970.1| hypothetical protein MSMEG_0559 [Mycobacterium smegmatis str. MC2 155] gi|118171703|gb|ABK72599.1| conserved domain protein [Mycobacterium smegmatis str. MC2 155] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P+G DVF+H S ++ +G +L E Q V ++ Q Sbjct: 3 QGTVKWFNGEKGFGFIAPDGGA---PDVFVHYSEISGSGFRSLEENQRVEFEITQ 54 >gi|50121319|ref|YP_050486.1| cold shock-like protein CspC [Pectobacterium atrosepticum SCRI1043] gi|85059298|ref|YP_455000.1| cold shock-like protein CspC [Sodalis glossinidius str. 'morsitans'] gi|227111514|ref|ZP_03825170.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327800|ref|ZP_03831824.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253688307|ref|YP_003017497.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261821484|ref|YP_003259590.1| cold shock-like protein CspC [Pectobacterium wasabiae WPP163] gi|49611845|emb|CAG75294.1| cold shock protein [Pectobacterium atrosepticum SCRI1043] gi|84779818|dbj|BAE74595.1| cold shock protein [Sodalis glossinidius str. 'morsitans'] gi|251754885|gb|ACT12961.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261605497|gb|ACX87983.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60 >gi|88811641|ref|ZP_01126895.1| probable cold-shock protein [Nitrococcus mobilis Nb-231] gi|88791032|gb|EAR22145.1| probable cold-shock protein [Nitrococcus mobilis Nb-231] Length = 70 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G +KW++ KGYGFI S E G DVF+H A+ G L EGQ V +D V+ Sbjct: 7 GVVKWFDDSKGYGFI----SQEQGPDVFVHFRAIRGEGFRTLREGQRVEFDIVEG 57 >gi|170691171|ref|ZP_02882337.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] gi|170144420|gb|EDT12582.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N KG+GFITP+ + GDD+F H S ++ G L E Q V+++ Q Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGNGFKTLAENQKVSFETKQ 54 >gi|157963078|ref|YP_001503112.1| cold-shock DNA-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|167625248|ref|YP_001675542.1| cold-shock DNA-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|157848078|gb|ABV88577.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC 700345] gi|167355270|gb|ABZ77883.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis HAW-EB4] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+ S G L EGQ V+++ Q Sbjct: 6 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAITSDGFKTLAEGQKVSFEVEQ 56 >gi|187921398|ref|YP_001890430.1| cold-shock DNA-binding domain-containing protein [Burkholderia phytofirmans PsJN] gi|187719836|gb|ACD21059.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N KG+GFITP+ + GDD+F H S ++ G L E Q V+++ Q Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGDGFKTLAENQKVSFETKQ 54 >gi|330964818|gb|EGH65078.1| cold-shock protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 202 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 191 QAEDVIAALPR 201 >gi|308188556|ref|YP_003932687.1| Cold shock-like protein cspA [Pantoea vagans C9-1] gi|308059066|gb|ADO11238.1| Cold shock-like protein cspA [Pantoea vagans C9-1] Length = 70 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ ++ DVF+H SA+ + L EGQ V++ ++N A G Sbjct: 7 GLVKWFNSDKGFGFITPDDGSK---DVFVHFSAIQADNYKTLDEGQKVSF-TIENGAKG 61 >gi|291517937|emb|CBK73158.1| cold-shock DNA-binding protein family [Butyrivibrio fibrisolvens 16/4] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 5/60 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI S E G DVF+H S + S G L EG V Y+ V + A G Sbjct: 3 KGTVKWFNNSKGYGFI----SDEEGKDVFVHFSGINSEGFKTLEEGATVEYE-VTDGAKG 57 >gi|260598298|ref|YP_003210869.1| Cold shock-like protein cspC [Cronobacter turicensis z3032] gi|260217475|emb|CBA31616.1| Cold shock-like protein cspC [Cronobacter turicensis z3032] Length = 106 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 42 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 97 >gi|119897425|ref|YP_932638.1| cold-shock protein [Azoarcus sp. BH72] gi|119669838|emb|CAL93751.1| cold-shock protein [Azoarcus sp. BH72] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ +E D+F H SA+ G L EG+ V+++ Q Sbjct: 4 GTVKWFNDSKGFGFITPDDGSE---DLFAHFSAINMNGFKTLKEGEKVSFEVTQ 54 >gi|50084495|ref|YP_046005.1| putative cold shock protein [Acinetobacter sp. ADP1] gi|49530471|emb|CAG68183.1| putative cold shock protein [Acinetobacter sp. ADP1] Length = 70 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI G GDDVF+H A+ G +L +GQ V + VQ Sbjct: 6 QGVVKWFNDTKGFGFIQRNG----GDDVFVHFRAIMGDGHRSLRDGQRVEFSVVQGQKG- 60 Query: 64 KYSAENLK 71 + AEN++ Sbjct: 61 -FQAENVQ 67 >gi|45441309|ref|NP_992848.1| cold shock-like protein CspC [Yersinia pestis biovar Microtus str. 91001] gi|51595960|ref|YP_070151.1| cold shock-like protein CspC [Yersinia pseudotuberculosis IP 32953] gi|108807116|ref|YP_651032.1| cold shock-like protein CspC [Yersinia pestis Antiqua] gi|108812537|ref|YP_648304.1| cold shock-like protein CspC [Yersinia pestis Nepal516] gi|123442059|ref|YP_001006042.1| cold shock-like protein CspC [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145598663|ref|YP_001162739.1| cold shock-like protein CspC [Yersinia pestis Pestoides F] gi|149366301|ref|ZP_01888336.1| cold shock protein [Yersinia pestis CA88-4125] gi|157371062|ref|YP_001479051.1| cold shock-like protein CspC [Serratia proteamaculans 568] gi|165927969|ref|ZP_02223801.1| conserved domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|166010855|ref|ZP_02231753.1| conserved domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211069|ref|ZP_02237104.1| conserved domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167420033|ref|ZP_02311786.1| conserved domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427111|ref|ZP_02318864.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024699|ref|YP_001721204.1| cold shock-like protein CspC [Yersinia pseudotuberculosis YPIII] gi|186895059|ref|YP_001872171.1| cold shock-like protein CspC [Yersinia pseudotuberculosis PB1/+] gi|218928871|ref|YP_002346746.1| cold shock-like protein CspC [Yersinia pestis CO92] gi|229894196|ref|ZP_04509379.1| stress protein, member of the CspA-family [Yersinia pestis Pestoides A] gi|229897121|ref|ZP_04512277.1| stress protein, member of the CspA-family [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897848|ref|ZP_04512999.1| stress protein, member of the CspA-family [Yersinia pestis biovar Orientalis str. India 195] gi|229902921|ref|ZP_04518038.1| stress protein, member of the CspA-family [Yersinia pestis Nepal516] gi|257168081|ref|YP_003169746.1| cold shock-like protein CspC [Yersinia pestis KIM 10] gi|270262270|ref|ZP_06190542.1| Cold shock-like protein CspC [Serratia odorifera 4Rx13] gi|270486706|ref|ZP_06203780.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|284988616|ref|YP_003422337.1| cold shock protein [Yersinia pseudotuberculosis IP 31758] gi|293395700|ref|ZP_06639982.1| MerR family copper efflux regulator [Serratia odorifera DSM 4582] gi|322833600|ref|YP_004213627.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|332162025|ref|YP_004298602.1| cold shock-like protein CspC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|45436169|gb|AAS61725.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001] gi|51589242|emb|CAH20863.1| cold shock protein [Yersinia pseudotuberculosis IP 32953] gi|108776185|gb|ABG18704.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108779029|gb|ABG13087.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] gi|115347482|emb|CAL20388.1| cold shock protein [Yersinia pestis CO92] gi|122089020|emb|CAL11834.1| cold shock-like protein cspC1 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145210359|gb|ABP39766.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|149292714|gb|EDM42788.1| cold shock protein [Yersinia pestis CA88-4125] gi|157322826|gb|ABV41923.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] gi|165920026|gb|EDR37327.1| conserved domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165990199|gb|EDR42500.1| conserved domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166208249|gb|EDR52729.1| conserved domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961728|gb|EDR57749.1| conserved domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167053904|gb|EDR63736.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751233|gb|ACA68751.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186698085|gb|ACC88714.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|229680368|gb|EEO76467.1| stress protein, member of the CspA-family [Yersinia pestis Nepal516] gi|229688889|gb|EEO80954.1| stress protein, member of the CspA-family [Yersinia pestis biovar Orientalis str. India 195] gi|229693458|gb|EEO83507.1| stress protein, member of the CspA-family [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703594|gb|EEO90610.1| stress protein, member of the CspA-family [Yersinia pestis Pestoides A] gi|270044146|gb|EFA17238.1| Cold shock-like protein CspC [Serratia odorifera 4Rx13] gi|270335210|gb|EFA45987.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|291421637|gb|EFE94884.1| MerR family copper efflux regulator [Serratia odorifera DSM 4582] gi|320015521|gb|ADV99092.1| stress protein, member of the CspA-family [Yersinia pestis biovar Medievalis str. Harbin 35] gi|321168801|gb|ADW74500.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|325666255|gb|ADZ42899.1| cold shock-like protein CspC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860843|emb|CBX71127.1| cold shock-like protein cspC [Yersinia enterocolitica W22703] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60 Query: 64 KYSAENLKLV 73 SA N+ + Sbjct: 61 P-SAVNVTAI 69 >gi|237746308|ref|ZP_04576788.1| cold-shock DNA-binding family protein [Oxalobacter formigenes HOxBLS] gi|229377659|gb|EEO27750.1| cold-shock DNA-binding family protein [Oxalobacter formigenes HOxBLS] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N KG+GFITP+ G D+F H S + +G +LTEGQ V ++ Sbjct: 1 METGTVKWFNDSKGFGFITPD---SHGADLFAHFSEIQGSGFKSLTEGQKVRFE 51 >gi|226945960|ref|YP_002801033.1| Cold-shock-like protein [Azotobacter vinelandii DJ] gi|226720887|gb|ACO80058.1| Cold-shock-like protein [Azotobacter vinelandii DJ] Length = 69 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI ESG DVF+H A+ G +L EGQ V + +Q Sbjct: 7 GTVKWFNDAKGYGFI----QRESGPDVFVHYRAIRGEGHRSLIEGQKVEFSVIQ 56 >gi|329934360|ref|ZP_08284439.1| cold shock protein [Streptomyces griseoaurantiacus M045] gi|329305956|gb|EGG49811.1| cold shock protein [Streptomyces griseoaurantiacus M045] Length = 68 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI+ + G DVF H S + +G LTEG+ VT+D Q Sbjct: 4 GTVKWFNSEKGFGFIS---QNDGGPDVFAHYSEINGSGYRELTEGEQVTFDIGQ 54 >gi|323483687|ref|ZP_08089070.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14163] gi|323692654|ref|ZP_08106885.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14673] gi|323403023|gb|EGA95338.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14163] gi|323503291|gb|EGB19122.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14673] Length = 67 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +++G++KW+N KGYGFI S E G+D+F+H S +A G L +GQ V+++ + Sbjct: 1 MNKGTVKWFNSQKGYGFI----SDEQGNDIFVHFSGLAMDGYKTLEDGQSVSFEVTE 53 >gi|330975335|gb|EGH75401.1| cold-shock protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 202 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 191 QAEDVIAALPR 201 >gi|330968898|gb|EGH68964.1| cold-shock protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 202 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 191 QAEDVIAALPR 201 >gi|237800212|ref|ZP_04588673.1| cold-shock protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023069|gb|EGI03126.1| cold-shock protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 202 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 191 QAEDVIAALPR 201 >gi|78221460|ref|YP_383207.1| cold-shock DNA-binding protein family protein [Geobacter metallireducens GS-15] gi|78192715|gb|ABB30482.1| cold-shock DNA-binding protein family [Geobacter metallireducens GS-15] Length = 66 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+ ++G+DVF H SA+A G +LTEG VT++ + Sbjct: 4 GTVKWFNDSKGFGFL----EQDNGEDVFCHFSAIAGDGFKSLTEGDRVTFEVTK 53 >gi|329296308|ref|ZP_08253644.1| CspB [Plautia stali symbiont] Length = 70 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI+PE S++ DVF+H SA+ +L +GQ V V+N + G Sbjct: 7 GTVKWFNAEKGFGFISPEDSSK---DVFVHFSAIQGTDFRSLDDGQKVELS-VENGSKGP 62 Query: 65 YSAENLK 71 SA N+K Sbjct: 63 -SAVNVK 68 >gi|326796223|ref|YP_004314043.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] gi|326546987|gb|ADZ92207.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] Length = 69 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 8/73 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++K++N KG+GFIT E G DVF+H SA+ +G L EGQ V ++ A Sbjct: 4 VVTGTVKFFNETKGFGFIT----QEQGPDVFVHFSAINVSGFKTLAEGQKVQFEV----A 55 Query: 62 NGKYSAENLKLVP 74 +GK E + P Sbjct: 56 DGKKGPEAQNVTP 68 >gi|289674663|ref|ZP_06495553.1| cold-shock protein [Pseudomonas syringae pv. syringae FF5] Length = 202 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 191 QAEDVIAALPR 201 >gi|120554677|ref|YP_959028.1| cold-shock DNA-binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120324526|gb|ABM18841.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei VT8] Length = 103 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+N KGYGFI +G + DD+F H S+V G L GQ VT+D +D Sbjct: 3 RGKVKWFNNAKGYGFIIEDGCS---DDLFAHFSSVQMDGYKTLKAGQTVTFDKKPSD 56 >gi|15802236|ref|NP_288259.1| cold shock-like protein CspC [Escherichia coli O157:H7 EDL933] gi|15831787|ref|NP_310560.1| cold shock-like protein CspC [Escherichia coli O157:H7 str. Sakai] gi|16129777|ref|NP_416337.1| stress protein, member of the CspA-family [Escherichia coli str. K-12 substr. MG1655] gi|16760726|ref|NP_456343.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765178|ref|NP_460793.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|26248085|ref|NP_754125.1| cold shock-like protein CspC [Escherichia coli CFT073] gi|29141516|ref|NP_804858.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30062921|ref|NP_837092.1| cold shock-like protein CspC [Shigella flexneri 2a str. 2457T] gi|56413244|ref|YP_150319.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180401|ref|YP_216818.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|74311864|ref|YP_310283.1| cold shock-like protein CspC [Shigella sonnei Ss046] gi|82777211|ref|YP_403560.1| cold shock-like protein CspC [Shigella dysenteriae Sd197] gi|89108662|ref|AP_002442.1| stress protein, member of the CspA-family [Escherichia coli str. K-12 substr. W3110] gi|91211042|ref|YP_541028.1| cold shock-like protein CspC [Escherichia coli UTI89] gi|110641940|ref|YP_669670.1| cold shock-like protein CspC [Escherichia coli 536] gi|110805383|ref|YP_688903.1| cold shock-like protein CspC [Shigella flexneri 5 str. 8401] gi|146312039|ref|YP_001177113.1| cold shock-like protein CspC [Enterobacter sp. 638] gi|152970887|ref|YP_001335996.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157145410|ref|YP_001452730.1| cold shock-like protein CspC [Citrobacter koseri ATCC BAA-895] gi|157157347|ref|YP_001463124.1| cold shock-like protein CspC [Escherichia coli E24377A] gi|157161289|ref|YP_001458607.1| cold shock-like protein CspC [Escherichia coli HS] gi|161503039|ref|YP_001570151.1| cold shock-like protein CspC [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161613652|ref|YP_001587617.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553480|ref|ZP_02347229.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993785|ref|ZP_02574878.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234267|ref|ZP_02659325.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168241432|ref|ZP_02666364.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259923|ref|ZP_02681896.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462668|ref|ZP_02696599.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820589|ref|ZP_02832589.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|170081478|ref|YP_001730798.1| CspA family stress protein [Escherichia coli str. K-12 substr. DH10B] gi|170682897|ref|YP_001743423.1| cold shock-like protein CspC [Escherichia coli SMS-3-5] gi|170769370|ref|ZP_02903823.1| cold shock protein CspC [Escherichia albertii TW07627] gi|170770188|ref|ZP_02904641.1| cold shock protein CspC [Escherichia albertii TW07627] gi|187733001|ref|YP_001880620.1| cold shock-like protein CspC [Shigella boydii CDC 3083-94] gi|188492990|ref|ZP_03000260.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|188533664|ref|YP_001907461.1| cold shock-like protein CspC [Erwinia tasmaniensis Et1/99] gi|189403500|ref|ZP_02795809.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC4486] gi|189404552|ref|ZP_02790213.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC4501] gi|189405077|ref|ZP_02813248.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC869] gi|191171767|ref|ZP_03033314.1| cold shock protein CspC [Escherichia coli F11] gi|194430509|ref|ZP_03062983.1| cold shock protein CspC [Escherichia coli B171] gi|194434939|ref|ZP_03067183.1| cold shock protein CspC [Shigella dysenteriae 1012] gi|194446619|ref|YP_002041093.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447468|ref|YP_002045883.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471139|ref|ZP_03077123.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735301|ref|YP_002114871.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195940304|ref|ZP_03085686.1| cold shock-like protein CspC [Escherichia coli O157:H7 str. EC4024] gi|197247963|ref|YP_002146187.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265795|ref|ZP_03165869.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362170|ref|YP_002141807.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245948|ref|YP_002215303.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200391118|ref|ZP_03217729.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205352499|ref|YP_002226300.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206580814|ref|YP_002237792.1| cold shock protein CspC [Klebsiella pneumoniae 342] gi|207856657|ref|YP_002243308.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208810722|ref|ZP_03252598.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4206] gi|208816517|ref|ZP_03257637.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4045] gi|208819312|ref|ZP_03259632.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4042] gi|209397128|ref|YP_002270903.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4115] gi|209919188|ref|YP_002293272.1| cold shock-like protein CspC [Escherichia coli SE11] gi|213028972|ref|ZP_03343419.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213162944|ref|ZP_03348654.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420305|ref|ZP_03353371.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424204|ref|ZP_03357069.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581262|ref|ZP_03363088.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213620853|ref|ZP_03373636.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649656|ref|ZP_03379709.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855888|ref|ZP_03384128.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|215487035|ref|YP_002329466.1| cold shock-like protein CspC [Escherichia coli O127:H6 str. E2348/69] gi|217328839|ref|ZP_03444920.1| cold shock protein CspC [Escherichia coli O157:H7 str. TW14588] gi|218548618|ref|YP_002382409.1| cold shock-like protein CspC [Escherichia fergusonii ATCC 35469] gi|218554396|ref|YP_002387309.1| cold shock-like protein CspC [Escherichia coli IAI1] gi|218558685|ref|YP_002391598.1| cold shock-like protein CspC [Escherichia coli S88] gi|218689759|ref|YP_002397971.1| cold shock-like protein CspC [Escherichia coli ED1a] gi|218695386|ref|YP_002403053.1| cold shock-like protein CspC [Escherichia coli 55989] gi|218699608|ref|YP_002407237.1| cold shock-like protein CspC [Escherichia coli IAI39] gi|218705322|ref|YP_002412841.1| cold shock-like protein CspC [Escherichia coli UMN026] gi|224583673|ref|YP_002637471.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|227885751|ref|ZP_04003556.1| cold shock family protein CspC [Escherichia coli 83972] gi|237705773|ref|ZP_04536254.1| cold shock protein [Escherichia sp. 3_2_53FAA] gi|237731860|ref|ZP_04562341.1| cold shock-like protein cspC [Citrobacter sp. 30_2] gi|238895399|ref|YP_002920134.1| cold shock-like protein CspC [Klebsiella pneumoniae NTUH-K2044] gi|238901037|ref|YP_002926833.1| stress protein, member of the CspA-family [Escherichia coli BW2952] gi|238912099|ref|ZP_04655936.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|253773223|ref|YP_003036054.1| cold shock-like protein CspC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161882|ref|YP_003044990.1| cold shock-like protein CspC [Escherichia coli B str. REL606] gi|254793446|ref|YP_003078283.1| cold shock-like protein CspC [Escherichia coli O157:H7 str. TW14359] gi|256017989|ref|ZP_05431854.1| cold shock-like protein CspC [Shigella sp. D9] gi|256022513|ref|ZP_05436378.1| cold shock-like protein CspC [Escherichia sp. 4_1_40B] gi|259908254|ref|YP_002648610.1| cold shock-like protein CspC [Erwinia pyrifoliae Ep1/96] gi|260844168|ref|YP_003221946.1| stress protein CspC [Escherichia coli O103:H2 str. 12009] gi|260855683|ref|YP_003229574.1| stress protein CspC [Escherichia coli O26:H11 str. 11368] gi|260868343|ref|YP_003234745.1| stress protein CspC [Escherichia coli O111:H- str. 11128] gi|261227680|ref|ZP_05941961.1| stress protein, member of the CspA-family [Escherichia coli O157:H7 str. FRIK2000] gi|261258154|ref|ZP_05950687.1| Cold shock-like protein cspC [Escherichia coli O157:H7 str. FRIK966] gi|261340207|ref|ZP_05968065.1| conserved domain protein [Enterobacter cancerogenus ATCC 35316] gi|262041935|ref|ZP_06015118.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|283832781|ref|ZP_06352522.1| conserved domain protein [Citrobacter youngae ATCC 29220] gi|288934716|ref|YP_003438775.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|289804519|ref|ZP_06535148.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289825969|ref|ZP_06545128.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|290508848|ref|ZP_06548219.1| cold shock protein CspG [Klebsiella sp. 1_1_55] gi|291283004|ref|YP_003499822.1| hypothetical protein G2583_2272 [Escherichia coli O55:H7 str. CB9615] gi|292488490|ref|YP_003531374.1| cold shock-like protein CspC [Erwinia amylovora CFBP1430] gi|292899677|ref|YP_003539046.1| cold shock-like protein [Erwinia amylovora ATCC 49946] gi|293405319|ref|ZP_06649311.1| cold shock protein CspG [Escherichia coli FVEC1412] gi|293410131|ref|ZP_06653707.1| cold shock protein cspC [Escherichia coli B354] gi|293415138|ref|ZP_06657781.1| cold shock protein CspG [Escherichia coli B185] gi|293446195|ref|ZP_06662617.1| cold shock protein CspG [Escherichia coli B088] gi|296101843|ref|YP_003611989.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|298380961|ref|ZP_06990560.1| cold shock-like protein cspC [Escherichia coli FVEC1302] gi|300717038|ref|YP_003741841.1| cold shock protein [Erwinia billingiae Eb661] gi|300816289|ref|ZP_07096511.1| cold shock protein CspE [Escherichia coli MS 107-1] gi|300825532|ref|ZP_07105593.1| cold shock protein CspE [Escherichia coli MS 119-7] gi|300899064|ref|ZP_07117350.1| cold shock protein CspE [Escherichia coli MS 198-1] gi|300904686|ref|ZP_07122520.1| cold shock protein CspE [Escherichia coli MS 84-1] gi|300917606|ref|ZP_07134258.1| cold shock protein CspE [Escherichia coli MS 115-1] gi|300924891|ref|ZP_07140823.1| cold shock protein CspE [Escherichia coli MS 182-1] gi|300928850|ref|ZP_07144356.1| cold shock protein CspE [Escherichia coli MS 187-1] gi|300938827|ref|ZP_07153537.1| cold shock protein CspE [Escherichia coli MS 21-1] gi|300951435|ref|ZP_07165274.1| cold shock protein CspE [Escherichia coli MS 116-1] gi|300956672|ref|ZP_07168948.1| cold shock protein CspE [Escherichia coli MS 175-1] gi|300981990|ref|ZP_07175834.1| cold shock protein CspE [Escherichia coli MS 200-1] gi|300994227|ref|ZP_07180784.1| cold shock protein CspE [Escherichia coli MS 45-1] gi|301020113|ref|ZP_07184242.1| cold shock protein CspE [Escherichia coli MS 196-1] gi|301026567|ref|ZP_07189993.1| cold shock protein CspE [Escherichia coli MS 69-1] gi|301050830|ref|ZP_07197684.1| cold shock protein CspE [Escherichia coli MS 185-1] gi|301305922|ref|ZP_07212005.1| cold shock protein CspE [Escherichia coli MS 124-1] gi|301327584|ref|ZP_07220801.1| cold shock protein CspE [Escherichia coli MS 78-1] gi|301645665|ref|ZP_07245593.1| cold shock protein CspE [Escherichia coli MS 146-1] gi|306814930|ref|ZP_07449086.1| Cold shock-like protein cspC [Escherichia coli NC101] gi|307138483|ref|ZP_07497839.1| Cold shock-like protein cspC [Escherichia coli H736] gi|307314098|ref|ZP_07593710.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|309788269|ref|ZP_07682873.1| cold shock-like protein cspI [Shigella dysenteriae 1617] gi|309794201|ref|ZP_07688625.1| cold shock protein CspE [Escherichia coli MS 145-7] gi|311279278|ref|YP_003941509.1| cold-shock DNA-binding domain-containing protein [Enterobacter cloacae SCF1] gi|312967022|ref|ZP_07781240.1| cold shock-like protein cspI [Escherichia coli 2362-75] gi|312969860|ref|ZP_07784043.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|317048459|ref|YP_004116107.1| cold-shock DNA-binding domain-containing protein [Pantoea sp. At-9b] gi|330002884|ref|ZP_08304436.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3] gi|331642433|ref|ZP_08343568.1| conserved domain protein [Escherichia coli H736] gi|331647319|ref|ZP_08348413.1| conserved domain protein [Escherichia coli M605] gi|331653228|ref|ZP_08354233.1| conserved domain protein [Escherichia coli M718] gi|331657867|ref|ZP_08358829.1| conserved domain protein [Escherichia coli TA206] gi|331663313|ref|ZP_08364223.1| conserved domain protein [Escherichia coli TA143] gi|331668514|ref|ZP_08369362.1| conserved domain protein [Escherichia coli TA271] gi|331673355|ref|ZP_08374123.1| conserved domain protein [Escherichia coli TA280] gi|331677700|ref|ZP_08378375.1| conserved domain protein [Escherichia coli H591] gi|331683325|ref|ZP_08383926.1| conserved domain protein [Escherichia coli H299] gi|332279025|ref|ZP_08391438.1| cold shock protein [Shigella sp. D9] gi|76364245|sp|P0A9Y6|CSPC_ECOLI RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|76364246|sp|P0A9Y9|CSPC_SALTY RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|85687551|sp|P0A9Y8|CSPC_ECO57 RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|85687552|sp|P0A9Y7|CSPC_ECOL6 RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|85687553|sp|P0A9Z0|CSPC_SALTI RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|25296121|pir||AE0727 cold shock-like protein CspC [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|12515869|gb|AAG56812.1|AE005405_3 cold shock protein [Escherichia coli O157:H7 str. EDL933] gi|26108488|gb|AAN80690.1|AE016761_265 Cold shock-like protein cspC [Escherichia coli CFT073] gi|460698|dbj|BAA05854.1| CspC (MsmB) [Escherichia coli] gi|479005|gb|AAA23619.1| cold-shock protein [Escherichia coli] gi|1736467|dbj|BAA15634.1| stress protein, member of the CspA-family [Escherichia coli str. K12 substr. W3110] gi|1788126|gb|AAC74893.1| stress protein, member of the CspA-family [Escherichia coli str. K-12 substr. MG1655] gi|13362000|dbj|BAB35956.1| cold shock protein [Escherichia coli O157:H7 str. Sakai] gi|16420370|gb|AAL20752.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503023|emb|CAD05519.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi] gi|29137143|gb|AAO68707.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30041170|gb|AAP16899.1| cold shock protein [Shigella flexneri 2a str. 2457T] gi|56127501|gb|AAV77007.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128034|gb|AAX65737.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|73855341|gb|AAZ88048.1| cold shock protein [Shigella sonnei Ss046] gi|81241359|gb|ABB62069.1| cold shock protein [Shigella dysenteriae Sd197] gi|91072616|gb|ABE07497.1| cold shock protein CspC [Escherichia coli UTI89] gi|110343532|gb|ABG69769.1| cold shock-like protein CspC [Escherichia coli 536] gi|110614931|gb|ABF03598.1| cold shock protein [Shigella flexneri 5 str. 8401] gi|145318915|gb|ABP61062.1| cold-shock DNA-binding protein family [Enterobacter sp. 638] gi|150955736|gb|ABR77766.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157066969|gb|ABV06224.1| cold shock protein CspC [Escherichia coli HS] gi|157079377|gb|ABV19085.1| cold shock protein CspC [Escherichia coli E24377A] gi|157082615|gb|ABV12293.1| hypothetical protein CKO_01152 [Citrobacter koseri ATCC BAA-895] gi|160864386|gb|ABX21009.1| hypothetical protein SARI_01103 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161363016|gb|ABX66784.1| hypothetical protein SPAB_01376 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|169889313|gb|ACB03020.1| stress protein, member of the CspA-family [Escherichia coli str. K-12 substr. DH10B] gi|170120949|gb|EDS89880.1| cold shock protein CspC [Escherichia albertii TW07627] gi|170121694|gb|EDS90625.1| cold shock protein CspC [Escherichia albertii TW07627] gi|170520615|gb|ACB18793.1| cold shock protein CspC [Escherichia coli SMS-3-5] gi|187429993|gb|ACD09267.1| cold shock protein CspC [Shigella boydii CDC 3083-94] gi|188028706|emb|CAO96568.1| Cold shock protein [Erwinia tasmaniensis Et1/99] gi|188488189|gb|EDU63292.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|189360403|gb|EDU78822.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4486] gi|189364970|gb|EDU83386.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4501] gi|189371934|gb|EDU90350.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC869] gi|190908097|gb|EDV67689.1| cold shock protein CspC [Escherichia coli F11] gi|194405282|gb|ACF65504.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405772|gb|ACF65991.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194411450|gb|EDX27798.1| cold shock protein CspC [Escherichia coli B171] gi|194416827|gb|EDX32952.1| cold shock protein CspC [Shigella dysenteriae 1012] gi|194457503|gb|EDX46342.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710803|gb|ACF90024.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634080|gb|EDX52432.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093647|emb|CAR59117.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211666|gb|ACH49063.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197244050|gb|EDY26670.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197940464|gb|ACH77797.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603563|gb|EDZ02109.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205272280|emb|CAR37158.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322083|gb|EDZ09922.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328182|gb|EDZ14946.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331766|gb|EDZ18530.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339519|gb|EDZ26283.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342665|gb|EDZ29429.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350669|gb|EDZ37300.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206569872|gb|ACI11648.1| cold shock protein CspC [Klebsiella pneumoniae 342] gi|206708460|emb|CAR32781.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208725238|gb|EDZ74945.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4206] gi|208730860|gb|EDZ79549.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4045] gi|208739435|gb|EDZ87117.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4042] gi|209158528|gb|ACI35961.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4115] gi|209767848|gb|ACI82236.1| cold shock protein [Escherichia coli] gi|209767850|gb|ACI82237.1| cold shock protein [Escherichia coli] gi|209767852|gb|ACI82238.1| cold shock protein [Escherichia coli] gi|209767854|gb|ACI82239.1| cold shock protein [Escherichia coli] gi|209767856|gb|ACI82240.1| cold shock protein [Escherichia coli] gi|209912447|dbj|BAG77521.1| cold shock protein [Escherichia coli SE11] gi|215265107|emb|CAS09495.1| stress protein, member of the CspA-family [Escherichia coli O127:H6 str. E2348/69] gi|217318186|gb|EEC26613.1| cold shock protein CspC [Escherichia coli O157:H7 str. TW14588] gi|218352118|emb|CAU97855.1| stress protein, member of the CspA-family [Escherichia coli 55989] gi|218356159|emb|CAQ88776.1| stress protein, member of the CspA-family [Escherichia fergusonii ATCC 35469] gi|218361164|emb|CAQ98747.1| stress protein, member of the CspA-family [Escherichia coli IAI1] gi|218365454|emb|CAR03181.1| stress protein, member of the CspA-family [Escherichia coli S88] gi|218369594|emb|CAR17363.1| stress protein, member of the CspA-family [Escherichia coli IAI39] gi|218427323|emb|CAR08218.2| stress protein, member of the CspA-family [Escherichia coli ED1a] gi|218432419|emb|CAR13310.1| stress protein, member of the CspA-family [Escherichia coli UMN026] gi|222033570|emb|CAP76311.1| Cold shock-like protein cspC [Escherichia coli LF82] gi|224468200|gb|ACN46030.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224963876|emb|CAX55379.1| Cold shock-like protein CspC [Erwinia pyrifoliae Ep1/96] gi|226900530|gb|EEH86789.1| cold shock protein [Escherichia sp. 3_2_53FAA] gi|226907399|gb|EEH93317.1| cold shock-like protein cspC [Citrobacter sp. 30_2] gi|227837324|gb|EEJ47790.1| cold shock family protein CspC [Escherichia coli 83972] gi|238547716|dbj|BAH64067.1| cold shock-like protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|238863580|gb|ACR65578.1| stress protein, member of the CspA-family [Escherichia coli BW2952] gi|242377543|emb|CAQ32298.1| stress protein, member of the CspA family; predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|253324267|gb|ACT28869.1| cold-shock DNA-binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973783|gb|ACT39454.1| stress protein, member of the CspA-family [Escherichia coli B str. REL606] gi|253977977|gb|ACT43647.1| stress protein, member of the CspA-family [Escherichia coli BL21(DE3)] gi|254592846|gb|ACT72207.1| stress protein, member of the CspA-family [Escherichia coli O157:H7 str. TW14359] gi|257754332|dbj|BAI25834.1| stress protein CspC [Escherichia coli O26:H11 str. 11368] gi|257759315|dbj|BAI30812.1| stress protein CspC [Escherichia coli O103:H2 str. 12009] gi|257764699|dbj|BAI36194.1| stress protein CspC [Escherichia coli O111:H- str. 11128] gi|259040741|gb|EEW41829.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|260449056|gb|ACX39478.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|261247022|emb|CBG24839.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993798|gb|ACY88683.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|281178889|dbj|BAI55219.1| cold shock protein [Escherichia coli SE15] gi|281600822|gb|ADA73806.1| Cold shock-like protein cspC [Shigella flexneri 2002017] gi|283478185|emb|CAY74101.1| Cold shock-like protein cspC (CSP-C) [Erwinia pyrifoliae DSM 12163] gi|284921742|emb|CBG34814.1| cold shock-like protein CspC [Escherichia coli 042] gi|288317723|gb|EFC56661.1| conserved domain protein [Enterobacter cancerogenus ATCC 35316] gi|288889425|gb|ADC57743.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|289152142|gb|ADC84001.1| cold shock-like protein [Escherichia coli] gi|289152144|gb|ADC84002.1| cold shock-like protein [Escherichia coli] gi|289152146|gb|ADC84003.1| cold shock-like protein [Escherichia coli] gi|289152148|gb|ADC84004.1| cold shock-like protein [Escherichia coli] gi|289152150|gb|ADC84005.1| cold shock-like protein [Escherichia coli] gi|289152152|gb|ADC84006.1| cold shock-like protein [Escherichia coli] gi|289152154|gb|ADC84007.1| cold shock-like protein [Escherichia coli] gi|289152156|gb|ADC84008.1| cold shock-like protein [Escherichia coli] gi|289152160|gb|ADC84010.1| cold shock-like protein [Escherichia coli] gi|289152162|gb|ADC84011.1| cold shock-like protein [Escherichia coli] gi|289152164|gb|ADC84012.1| cold shock-like protein [Escherichia coli] gi|289152166|gb|ADC84013.1| cold shock-like protein [Escherichia coli] gi|289152168|gb|ADC84014.1| cold shock-like protein [Escherichia coli] gi|289152170|gb|ADC84015.1| cold shock-like protein [Escherichia coli] gi|289152172|gb|ADC84016.1| cold shock-like protein [Escherichia coli] gi|289152174|gb|ADC84017.1| cold shock-like protein [Escherichia coli] gi|289152176|gb|ADC84018.1| cold shock-like protein [Escherichia coli] gi|289152178|gb|ADC84019.1| cold shock-like protein [Escherichia coli] gi|289152180|gb|ADC84020.1| cold shock-like protein [Escherichia coli] gi|289152182|gb|ADC84021.1| cold shock-like protein [Escherichia coli] gi|289152184|gb|ADC84022.1| cold shock-like protein [Escherichia coli] gi|289152186|gb|ADC84023.1| cold shock-like protein [Escherichia coli] gi|289152188|gb|ADC84024.1| cold shock-like protein [Escherichia coli] gi|289152190|gb|ADC84025.1| cold shock-like protein [Escherichia coli] gi|289152192|gb|ADC84026.1| cold shock-like protein [Escherichia coli] gi|289152194|gb|ADC84027.1| cold shock-like protein [Escherichia coli] gi|289152196|gb|ADC84028.1| cold shock-like protein [Escherichia coli] gi|289152198|gb|ADC84029.1| cold shock-like protein [Escherichia coli] gi|289152200|gb|ADC84030.1| cold shock-like protein [Escherichia coli] gi|289152202|gb|ADC84031.1| cold shock-like protein [Escherichia coli] gi|289778242|gb|EFD86239.1| cold shock protein CspG [Klebsiella sp. 1_1_55] gi|290762877|gb|ADD56838.1| hypothetical protein G2583_2272 [Escherichia coli O55:H7 str. CB9615] gi|291072468|gb|EFE10577.1| conserved domain protein [Citrobacter youngae ATCC 29220] gi|291199525|emb|CBJ46642.1| cold shock-like protein [Erwinia amylovora ATCC 49946] gi|291323025|gb|EFE62453.1| cold shock protein CspG [Escherichia coli B088] gi|291427527|gb|EFF00554.1| cold shock protein CspG [Escherichia coli FVEC1412] gi|291432786|gb|EFF05765.1| cold shock protein CspG [Escherichia coli B185] gi|291470599|gb|EFF13083.1| cold shock protein cspC [Escherichia coli B354] gi|291553921|emb|CBA20966.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora CFBP1430] gi|294492772|gb|ADE91528.1| cold shock protein CspC [Escherichia coli IHE3034] gi|295056302|gb|ADF61040.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295095573|emb|CBK84663.1| Cold shock proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] gi|298278403|gb|EFI19917.1| cold shock-like protein cspC [Escherichia coli FVEC1302] gi|299062874|emb|CAX59994.1| cold shock protein [Erwinia billingiae Eb661] gi|299881920|gb|EFI90131.1| cold shock protein CspE [Escherichia coli MS 196-1] gi|300297519|gb|EFJ53904.1| cold shock protein CspE [Escherichia coli MS 185-1] gi|300307364|gb|EFJ61884.1| cold shock protein CspE [Escherichia coli MS 200-1] gi|300316550|gb|EFJ66334.1| cold shock protein CspE [Escherichia coli MS 175-1] gi|300357308|gb|EFJ73178.1| cold shock protein CspE [Escherichia coli MS 198-1] gi|300395440|gb|EFJ78978.1| cold shock protein CspE [Escherichia coli MS 69-1] gi|300403385|gb|EFJ86923.1| cold shock protein CspE [Escherichia coli MS 84-1] gi|300406355|gb|EFJ89893.1| cold shock protein CspE [Escherichia coli MS 45-1] gi|300415174|gb|EFJ98484.1| cold shock protein CspE [Escherichia coli MS 115-1] gi|300418941|gb|EFK02252.1| cold shock protein CspE [Escherichia coli MS 182-1] gi|300449309|gb|EFK12929.1| cold shock protein CspE [Escherichia coli MS 116-1] gi|300456260|gb|EFK19753.1| cold shock protein CspE [Escherichia coli MS 21-1] gi|300463140|gb|EFK26633.1| cold shock protein CspE [Escherichia coli MS 187-1] gi|300522015|gb|EFK43084.1| cold shock protein CspE [Escherichia coli MS 119-7] gi|300530979|gb|EFK52041.1| cold shock protein CspE [Escherichia coli MS 107-1] gi|300838848|gb|EFK66608.1| cold shock protein CspE [Escherichia coli MS 124-1] gi|300845833|gb|EFK73593.1| cold shock protein CspE [Escherichia coli MS 78-1] gi|301076094|gb|EFK90900.1| cold shock protein CspE [Escherichia coli MS 146-1] gi|301158361|emb|CBW17860.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|305851578|gb|EFM52031.1| Cold shock-like protein cspC [Escherichia coli NC101] gi|306906236|gb|EFN36753.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|307553841|gb|ADN46616.1| cold shock-like protein CspC [Escherichia coli ABU 83972] gi|307626698|gb|ADN71002.1| Cold shock-like protein cspC [Escherichia coli UM146] gi|308122106|gb|EFO59368.1| cold shock protein CspE [Escherichia coli MS 145-7] gi|308748473|gb|ADO48225.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1] gi|308923651|gb|EFP69154.1| cold shock-like protein cspI [Shigella dysenteriae 1617] gi|310338145|gb|EFQ03234.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|310767829|gb|ADP12779.1| Cold shock-like protein cspC [Erwinia sp. Ejp617] gi|312172634|emb|CBX80890.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora ATCC BAA-2158] gi|312288486|gb|EFR16388.1| cold shock-like protein cspI [Escherichia coli 2362-75] gi|312912826|dbj|BAJ36800.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312946419|gb|ADR27246.1| cold shock-like protein CspC [Escherichia coli O83:H1 str. NRG 857C] gi|313649142|gb|EFS13576.1| cold shock-like protein cspI [Shigella flexneri 2a str. 2457T] gi|315061126|gb|ADT75453.1| stress protein, member of the CspA-family [Escherichia coli W] gi|315136465|dbj|BAJ43624.1| cold shock-like protein cspC [Escherichia coli DH1] gi|315257366|gb|EFU37334.1| cold shock protein CspE [Escherichia coli MS 85-1] gi|315286527|gb|EFU45962.1| cold shock protein CspE [Escherichia coli MS 110-3] gi|315290383|gb|EFU49759.1| cold shock protein CspE [Escherichia coli MS 153-1] gi|315299954|gb|EFU59192.1| cold shock protein CspE [Escherichia coli MS 16-3] gi|316950076|gb|ADU69551.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b] gi|320085656|emb|CBY95434.1| Cold shock-like protein cspE CSP-E [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|320173186|gb|EFW48398.1| Cold shock protein CspC [Shigella dysenteriae CDC 74-1112] gi|320181137|gb|EFW56056.1| Cold shock protein CspC [Shigella boydii ATCC 9905] gi|320185016|gb|EFW59797.1| Cold shock protein CspC [Shigella flexneri CDC 796-83] gi|320188522|gb|EFW63184.1| Cold shock protein CspC [Escherichia coli O157:H7 str. EC1212] gi|320194464|gb|EFW69095.1| Cold shock protein CspC [Escherichia coli WV_060327] gi|320198003|gb|EFW72611.1| Cold shock protein CspC [Escherichia coli EC4100B] gi|320641674|gb|EFX11062.1| cold shock-like protein cspc [Escherichia coli O157:H7 str. G5101] gi|320647033|gb|EFX15866.1| cold shock-like protein cspc [Escherichia coli O157:H- str. 493-89] gi|320652316|gb|EFX20614.1| cold shock-like protein cspc [Escherichia coli O157:H- str. H 2687] gi|320657918|gb|EFX25680.1| cold shock-like protein cspc [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658491|gb|EFX26185.1| cold shock-like protein cspc [Escherichia coli O55:H7 str. USDA 5905] gi|320668389|gb|EFX35216.1| cold shock-like protein cspc [Escherichia coli O157:H7 str. LSU-61] gi|321224470|gb|EFX49533.1| Cold shock protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616832|gb|EFY13740.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618071|gb|EFY14963.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625742|gb|EFY22561.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626192|gb|EFY23002.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633798|gb|EFY30538.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638952|gb|EFY35645.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640770|gb|EFY37420.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644157|gb|EFY40702.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649229|gb|EFY45667.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655388|gb|EFY51696.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660856|gb|EFY57087.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662847|gb|EFY59054.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668031|gb|EFY64190.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674207|gb|EFY70301.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675438|gb|EFY71512.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683147|gb|EFY79163.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686841|gb|EFY82819.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714876|gb|EFZ06447.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130112|gb|ADX17542.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323152935|gb|EFZ39204.1| cold shock-like protein cspI [Escherichia coli EPECa14] gi|323175099|gb|EFZ60713.1| cold shock-like protein cspI [Escherichia coli LT-68] gi|323180603|gb|EFZ66148.1| cold shock-like protein cspI [Escherichia coli 1180] gi|323186429|gb|EFZ71777.1| cold shock-like protein cspI [Escherichia coli 1357] gi|323186827|gb|EFZ72146.1| cold shock-like protein cspI [Escherichia coli RN587/1] gi|323195267|gb|EFZ80447.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199160|gb|EFZ84255.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203311|gb|EFZ88338.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207416|gb|EFZ92364.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213768|gb|EFZ98550.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217399|gb|EGA02118.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223230|gb|EGA07571.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224674|gb|EGA08947.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231422|gb|EGA15535.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235862|gb|EGA19941.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240431|gb|EGA24474.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245324|gb|EGA29324.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246691|gb|EGA30663.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253546|gb|EGA37374.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258076|gb|EGA41754.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259373|gb|EGA43012.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266797|gb|EGA50283.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269003|gb|EGA52459.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323378298|gb|ADX50566.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323937081|gb|EGB33361.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1520] gi|323940511|gb|EGB36702.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323948292|gb|EGB44280.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323952324|gb|EGB48197.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H252] gi|323956452|gb|EGB52194.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H263] gi|323961877|gb|EGB57476.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H489] gi|323968590|gb|EGB63996.1| cold-shock DNA-binding domain-containing protein [Escherichia coli M863] gi|323972670|gb|EGB67873.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|323977994|gb|EGB73080.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TW10509] gi|324007189|gb|EGB76408.1| cold shock protein CspE [Escherichia coli MS 57-2] gi|324011600|gb|EGB80819.1| cold shock protein CspE [Escherichia coli MS 60-1] gi|324018044|gb|EGB87263.1| cold shock protein CspE [Escherichia coli MS 117-3] gi|324113559|gb|EGC07534.1| cold-shock DNA-binding domain-containing protein [Escherichia fergusonii B253] gi|324118883|gb|EGC12772.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1167] gi|325497031|gb|EGC94890.1| cold shock-like protein CspC [Escherichia fergusonii ECD227] gi|326342201|gb|EGD65982.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1044] gi|326343751|gb|EGD67513.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1125] gi|326627557|gb|EGE33900.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|327252944|gb|EGE64598.1| cold shock-like protein cspI [Escherichia coli STEC_7v] gi|328537175|gb|EGF63445.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3] gi|330911630|gb|EGH40140.1| cold shock protein CspC [Escherichia coli AA86] gi|331039231|gb|EGI11451.1| conserved domain protein [Escherichia coli H736] gi|331044102|gb|EGI16238.1| conserved domain protein [Escherichia coli M605] gi|331049326|gb|EGI21398.1| conserved domain protein [Escherichia coli M718] gi|331056115|gb|EGI28124.1| conserved domain protein [Escherichia coli TA206] gi|331059112|gb|EGI31089.1| conserved domain protein [Escherichia coli TA143] gi|331063708|gb|EGI35619.1| conserved domain protein [Escherichia coli TA271] gi|331069553|gb|EGI40940.1| conserved domain protein [Escherichia coli TA280] gi|331074160|gb|EGI45480.1| conserved domain protein [Escherichia coli H591] gi|331079540|gb|EGI50737.1| conserved domain protein [Escherichia coli H299] gi|332089944|gb|EGI95044.1| cold shock-like protein cspI [Shigella boydii 5216-82] gi|332093283|gb|EGI98342.1| cold shock-like protein cspI [Shigella dysenteriae 155-74] gi|332096604|gb|EGJ01598.1| cold shock-like protein cspI [Shigella boydii 3594-74] gi|332101377|gb|EGJ04723.1| cold shock protein [Shigella sp. D9] gi|332343548|gb|AEE56882.1| cold shock-like protein CspI [Escherichia coli UMNK88] gi|332760591|gb|EGJ90880.1| cold shock-like protein cspI [Shigella flexneri 2747-71] gi|332762433|gb|EGJ92698.1| cold shock-like protein cspI [Shigella flexneri 4343-70] gi|332762911|gb|EGJ93165.1| cold shock-like protein cspI [Shigella flexneri K-671] gi|332767108|gb|EGJ97303.1| cold shock protein [Shigella flexneri 2930-71] gi|332988724|gb|AEF07707.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] gi|333003646|gb|EGK23182.1| cold shock-like protein cspI [Shigella flexneri VA-6] gi|333004280|gb|EGK23811.1| cold shock-like protein cspI [Shigella flexneri K-218] gi|333006745|gb|EGK26242.1| cold shock-like protein cspI [Shigella flexneri K-272] gi|333018379|gb|EGK37678.1| cold shock-like protein cspI [Shigella flexneri K-304] gi|333018661|gb|EGK37954.1| cold shock-like protein cspI [Shigella flexneri K-227] Length = 69 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60 >gi|160878802|ref|YP_001557770.1| cold-shock DNA-binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160427468|gb|ABX41031.1| cold-shock DNA-binding domain protein [Clostridium phytofermentans ISDg] Length = 66 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N KG+GF+ S E G+DVF+H SA+ G L EG+ V ++ V+ + Sbjct: 1 MKKGTVKWFNAKKGFGFL----SDEEGNDVFVHFSALNMDGFKVLEEGEAVAFEVVEGE 55 >gi|89076141|ref|ZP_01162499.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|89048151|gb|EAR53735.1| putative Cold shock-like protein [Photobacterium sp. SKA34] Length = 69 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+ G L EGQ V +D Q Sbjct: 6 GIVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVAFDIEQ 56 >gi|330446014|ref|ZP_08309666.1| cold-shock domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490205|dbj|GAA04163.1| cold-shock domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 69 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+ G +L EGQ V++D Q Sbjct: 6 GIVKWFNDEKGFGFITQD---NGGADVFVHFRAITGEGFKSLKEGQKVSFDVEQ 56 >gi|116695961|ref|YP_841537.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] gi|113530460|emb|CAJ96807.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] Length = 67 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KGYGFITP+ + G D+F H S + G +L EG V ++ Q Sbjct: 4 GIVKWFNSEKGYGFITPD---DGGKDLFAHHSEIQGTGFKSLEEGARVEFEVTQ 54 >gi|239997241|ref|ZP_04717765.1| putative cold shock-like protein cspG [Alteromonas macleodii ATCC 27126] gi|332142943|ref|YP_004428681.1| putative cold shock-like protein cspG [Alteromonas macleodii str. 'Deep ecotype'] gi|332143012|ref|YP_004428750.1| putative cold shock-like protein cspG [Alteromonas macleodii str. 'Deep ecotype'] gi|327552965|gb|AEA99683.1| putative cold shock-like protein cspG [Alteromonas macleodii str. 'Deep ecotype'] gi|327553034|gb|AEA99752.1| putative cold shock-like protein cspG [Alteromonas macleodii str. 'Deep ecotype'] Length = 69 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N DKGYGF+T + G DVF+H A+ S G L EGQ V ++ Sbjct: 6 GTVKWFNADKGYGFLTQD---NGGKDVFVHFRAIISDGYKTLPEGQRVEFE 53 >gi|330950615|gb|EGH50875.1| cold-shock protein [Pseudomonas syringae Cit 7] Length = 202 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 191 QAEDVIAALPR 201 >gi|330896121|gb|EGH28342.1| cold-shock protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 202 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 191 QAEDVIAALPR 201 >gi|312138714|ref|YP_004006050.1| cold shock protein [Rhodococcus equi 103S] gi|311888053|emb|CBH47365.1| cold shock protein [Rhodococcus equi 103S] Length = 67 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI PE + DVF H S + G +L E Q V+YD Q Sbjct: 4 GTVKWFNAEKGFGFIAPE---DGSADVFAHYSEIQGGGFRSLDENQRVSYDLGQ 54 >gi|284103679|ref|ZP_06386113.1| cold shock protein [Candidatus Poribacteria sp. WGA-A3] gi|283830241|gb|EFC34486.1| cold shock protein [Candidatus Poribacteria sp. WGA-A3] Length = 76 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI EG DVF+H SA+ G L EG+ V +D V+ A G Sbjct: 7 GTVKWFNDRKGFGFIRVEGE----QDVFVHYSALQGEGFKTLKEGEPVEFDLVEG-AKGP 61 Query: 65 YSAENLK 71 +A +K Sbjct: 62 QAANVVK 68 >gi|323529334|ref|YP_004231486.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1001] gi|323386336|gb|ADX58426.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001] Length = 67 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + GDD+F H S + + G L E Q V+++ Q Sbjct: 4 GTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRADGFKTLAENQKVSFETKQ 54 >gi|260769456|ref|ZP_05878389.1| cold shock protein CspE [Vibrio furnissii CIP 102972] gi|260614794|gb|EEX39980.1| cold shock protein CspE [Vibrio furnissii CIP 102972] gi|315181988|gb|ADT88901.1| cold shock DNA-binding domain-containing protein [Vibrio furnissii NCTC 11218] Length = 69 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V + Q + Sbjct: 7 GTVKWFNETKGFGFI----KQENGPDVFAHFSAIQGDGFRTLAEGQKVEFVITQGQKGPQ 62 Query: 65 YSAENLKLV 73 AE++KL+ Sbjct: 63 --AESIKLL 69 >gi|257487017|ref|ZP_05641058.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488215|ref|ZP_07006251.1| DNA-binding cold-shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157273|gb|EFH98357.1| DNA-binding cold-shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330988962|gb|EGH87065.1| cold-shock protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 202 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 136 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 190 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 191 QAEDVIAALPR 201 >gi|167034611|ref|YP_001669842.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida GB-1] gi|166861099|gb|ABY99506.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1] Length = 84 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G TE D+F H SA+ G L GQ VT++ +Q Sbjct: 4 GKVKWFNNAKGYGFINEDGGTE---DLFAHYSAIQMDGYKTLKAGQAVTFNIIQ 54 >gi|13488214|ref|NP_085668.1| cold-shock protein [Mesorhizobium loti MAFF303099] gi|14027917|dbj|BAB54509.1| cold-shock protein [Mesorhizobium loti MAFF303099] Length = 97 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 3/48 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G++KWY P+KG+GFI P+ + DVF+H S + +GL L EGQ V Sbjct: 33 GTVKWYKPEKGFGFIAPDNGEK---DVFVHASTLTRSGLSALVEGQKV 77 >gi|225377225|ref|ZP_03754446.1| hypothetical protein ROSEINA2194_02871 [Roseburia inulinivorans DSM 16841] gi|225210929|gb|EEG93283.1| hypothetical protein ROSEINA2194_02871 [Roseburia inulinivorans DSM 16841] Length = 67 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +++G++KW+N KGYGFI S E G+DVF+H S + G +L EG V ++ V+ Sbjct: 1 MNKGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMEGFKSLEEGAAVEFEVVE 53 >gi|254504340|ref|ZP_05116491.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] gi|222440411|gb|EEE47090.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] Length = 70 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 5/74 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+IK++N D+G+GFITPE G DVF+H +A AG+ EG V++ ++D Sbjct: 1 MRENGTIKFFNHDRGFGFITPE---NGGKDVFVHVTAFEQAGIGTPVEGAKVSF-VAEDD 56 Query: 61 ANGK-YSAENLKLV 73 G+ A L+L+ Sbjct: 57 RRGRGKQAAQLELL 70 >gi|156394304|ref|XP_001636766.1| predicted protein [Nematostella vectensis] gi|156223872|gb|EDO44703.1| predicted protein [Nematostella vectensis] Length = 671 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFIT + + G+DVF+H+SA+ ++G +L EG+ V + N GK Sbjct: 485 GSVKWFNLIKGFGFITRD---DGGEDVFVHQSAIKASGYRSLEEGEHVQLT-ISNSDKGK 540 >gi|320449142|ref|YP_004201238.1| cold shock protein, CSD family [Thermus scotoductus SA-01] gi|320149311|gb|ADW20689.1| cold shock protein, CSD family [Thermus scotoductus SA-01] Length = 68 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +KGYGFI E G DVF+H +A+ + G L EG V ++ Sbjct: 1 MKKGTVKWFNAEKGYGFI----QQEEGPDVFVHFTAIEAEGFRTLNEGDRVEFE 50 >gi|223932623|ref|ZP_03624623.1| cold-shock DNA-binding domain protein [Streptococcus suis 89/1591] gi|302023415|ref|ZP_07248626.1| cold shock protein [Streptococcus suis 05HAS68] gi|330832233|ref|YP_004401058.1| cold-shock DNA-binding domain-containing protein [Streptococcus suis ST3] gi|223898733|gb|EEF65094.1| cold-shock DNA-binding domain protein [Streptococcus suis 89/1591] gi|329306456|gb|AEB80872.1| cold-shock DNA-binding domain protein [Streptococcus suis ST3] Length = 67 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI + E+G DVF H S + S +L EGQ VT++ Q Sbjct: 3 QGTVKWFNAEKGFGFI----AQENGPDVFAHFSEIQSNSFKSLEEGQKVTFEVEQ 53 >gi|45441055|ref|NP_992594.1| cold shock-like protein [Yersinia pestis biovar Microtus str. 91001] gi|51595732|ref|YP_069923.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953] gi|108806653|ref|YP_650569.1| cold shock-like protein [Yersinia pestis Antiqua] gi|108812775|ref|YP_648542.1| cold shock-like protein [Yersinia pestis Nepal516] gi|145599602|ref|YP_001163678.1| cold shock-like protein [Yersinia pestis Pestoides F] gi|149366623|ref|ZP_01888657.1| cold shock-like protein [Yersinia pestis CA88-4125] gi|153950801|ref|YP_001401574.1| cold shock domain-containing protein CspD [Yersinia pseudotuberculosis IP 31758] gi|162421201|ref|YP_001606104.1| cold shock domain-containing protein CspD [Yersinia pestis Angola] gi|165924529|ref|ZP_02220361.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis str. F1991016] gi|165938992|ref|ZP_02227545.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis str. IP275] gi|166009852|ref|ZP_02230750.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua str. E1979001] gi|166211633|ref|ZP_02237668.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua str. B42003004] gi|167399962|ref|ZP_02305480.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419873|ref|ZP_02311626.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424253|ref|ZP_02316006.1| cold shock domain protein CspD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469765|ref|ZP_02334469.1| cold shock domain protein CspD [Yersinia pestis FV-1] gi|170024919|ref|YP_001721424.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|186894809|ref|YP_001871921.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|218928514|ref|YP_002346389.1| cold shock-like protein [Yersinia pestis CO92] gi|229841332|ref|ZP_04461491.1| cold shock-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843436|ref|ZP_04463582.1| cold shock-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229895809|ref|ZP_04510979.1| cold shock-like protein [Yersinia pestis Pestoides A] gi|229903189|ref|ZP_04518302.1| cold shock-like protein [Yersinia pestis Nepal516] gi|270486982|ref|ZP_06204056.1| cold shock domain protein CspD [Yersinia pestis KIM D27] gi|45435914|gb|AAS61471.1| cold shock-like protein [Yersinia pestis biovar Microtus str. 91001] gi|51589014|emb|CAH20632.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953] gi|108776423|gb|ABG18942.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108778566|gb|ABG12624.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] gi|115347125|emb|CAL20018.1| cold shock-like protein [Yersinia pestis CO92] gi|145211298|gb|ABP40705.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|149290997|gb|EDM41072.1| cold shock-like protein [Yersinia pestis CA88-4125] gi|152962296|gb|ABS49757.1| cold shock domain protein CspD [Yersinia pseudotuberculosis IP 31758] gi|162354016|gb|ABX87964.1| cold shock domain protein CspD [Yersinia pestis Angola] gi|165913139|gb|EDR31763.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis str. IP275] gi|165923589|gb|EDR40721.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis str. F1991016] gi|165991248|gb|EDR43549.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua str. E1979001] gi|166207404|gb|EDR51884.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua str. B42003004] gi|166962614|gb|EDR58635.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050670|gb|EDR62078.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057102|gb|EDR66865.1| cold shock domain protein CspD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751453|gb|ACA68971.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186697835|gb|ACC88464.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|229678959|gb|EEO75062.1| cold shock-like protein [Yersinia pestis Nepal516] gi|229689783|gb|EEO81844.1| cold shock-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697698|gb|EEO87745.1| cold shock-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700732|gb|EEO88761.1| cold shock-like protein [Yersinia pestis Pestoides A] gi|270335486|gb|EFA46263.1| cold shock domain protein CspD [Yersinia pestis KIM D27] gi|320015779|gb|ADV99350.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 87 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQIVNFD 51 >gi|262368477|ref|ZP_06061806.1| cold shock protein [Acinetobacter johnsonii SH046] gi|262316155|gb|EEY97193.1| cold shock protein [Acinetobacter johnsonii SH046] Length = 69 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI ESG DVF H +AS+G L EGQ V++ Q Sbjct: 7 GTVKWFNETKGFGFI----QQESGPDVFAHFREIASSGFKTLHEGQQVSFSIEQ 56 >gi|206890727|ref|YP_002249771.1| hypothetical protein THEYE_A1982 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742665|gb|ACI21722.1| conserved domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 67 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N KG+GFI +G G DVF+H +++ G L +G V +D V+ D Sbjct: 1 MAFEGRVKWFNESKGFGFIQQDG----GQDVFVHYTSIKGDGFKTLKQGDRVKFDVVEGD 56 >gi|291615935|ref|YP_003518677.1| CspB [Pantoea ananatis LMG 20103] gi|291150965|gb|ADD75549.1| CspB [Pantoea ananatis LMG 20103] gi|327396192|dbj|BAK13614.1| cold shock-like protein CspB [Pantoea ananatis AJ13355] Length = 79 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N DKG+GFI+P+ ++ DVF+H SA+ S+ L EGQ V + Sbjct: 16 GLVKWFNADKGFGFISPQDGSK---DVFVHFSAIQSSDFKTLDEGQKVEF 62 >gi|126664621|ref|ZP_01735605.1| cold-shock DNA-binding domain family protein [Marinobacter sp. ELB17] gi|126630947|gb|EBA01561.1| cold-shock DNA-binding domain family protein [Marinobacter sp. ELB17] Length = 68 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFIT EG G DVF+H SA+ G L EGQ V + Q + Sbjct: 6 GTVKFFNEAKGFGFITREG----GPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKGPQ 61 Query: 65 YSAENL 70 AEN+ Sbjct: 62 --AENV 65 >gi|332187878|ref|ZP_08389611.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17] gi|332012039|gb|EGI54111.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17] Length = 284 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K++N KG+GF+ + + G+DVF+H SAV AGL L EGQ + + V D G+ Sbjct: 106 GVVKFFNAQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLGFTLV--DRGGR 160 Query: 65 YSAENLKL 72 SA LK+ Sbjct: 161 ISATELKI 168 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AG+ +L EG + ++ ++ D GK Sbjct: 219 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMGSLNEGDRLQFE-IEVDRRGK 274 Query: 65 YSAENLK 71 Y+A NL+ Sbjct: 275 YAAVNLQ 281 >gi|317123476|ref|YP_004097588.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] gi|315587564|gb|ADU46861.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] Length = 67 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI +G G DVF+H SA+ S G +L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAIQSNGYRSLDEAQRVEFEVTQ 54 >gi|312962766|ref|ZP_07777254.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] gi|311282983|gb|EFQ61576.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] Length = 200 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 134 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 188 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 189 QAEDVIAALPR 199 >gi|148266031|ref|YP_001232737.1| cold-shock DNA-binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146399531|gb|ABQ28164.1| cold-shock DNA-binding protein family [Geobacter uraniireducens Rf4] Length = 66 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 5/63 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GF+ E+G+DVF+H SA+ G +L EG VT+D V N G Sbjct: 4 GTVKWFNDSKGFGFL----EQENGEDVFVHFSAITGDGFKSLAEGDRVTFD-VTNGPKGL 58 Query: 65 YSA 67 +A Sbjct: 59 QAA 61 >gi|330959259|gb|EGH59519.1| cold-shock protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 189 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 123 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 177 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 178 QAEDVIAALPR 188 >gi|288918913|ref|ZP_06413256.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] gi|288349665|gb|EFC83899.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] Length = 67 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KG+GFI+ +G G DVF+H SA+ G L EGQ V + Q Sbjct: 3 QGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIVMDGYKALEEGQRVEFQVTQG 55 >gi|228990213|ref|ZP_04150183.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] gi|228996304|ref|ZP_04155949.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|229003971|ref|ZP_04161777.1| Cold shock protein cspB [Bacillus mycoides Rock1-4] gi|228757340|gb|EEM06579.1| Cold shock protein cspB [Bacillus mycoides Rock1-4] gi|228763496|gb|EEM12398.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|228769576|gb|EEM18169.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] Length = 67 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G G+DVF+H SA+ + G +L EG+ V+++ D Sbjct: 1 MTVTGQVKWFNNEKGFGFIEVPG----GNDVFVHFSAITTEGFKSLEEGEKVSFEI--ED 54 Query: 61 ANGKYSAENL 70 N A+N+ Sbjct: 55 GNRGPQAKNV 64 >gi|119476170|ref|ZP_01616522.1| CspA-like protein [marine gamma proteobacterium HTCC2143] gi|119450797|gb|EAW32031.1| CspA-like protein [marine gamma proteobacterium HTCC2143] Length = 91 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 + G++KW+N KG+GFI PEG G DVF H S ++ G L GQ V++D V Sbjct: 1 MQTGTVKWFNNAKGFGFILPEG---GGADVFAHYSTISMDGYKTLKAGQPVSFDTV 53 >gi|91775760|ref|YP_545516.1| cold-shock DNA-binding protein family protein [Methylobacillus flagellatus KT] gi|91709747|gb|ABE49675.1| cold-shock DNA-binding protein family [Methylobacillus flagellatus KT] Length = 67 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI+P+ E GDD+F H S + ++G +L E V ++ Q A GK Sbjct: 4 GTVKWFNDAKGFGFISPD---EGGDDLFAHFSEIQTSGYKSLKENDRVQFEITQT-AKGK 59 Query: 65 YSA 67 ++ Sbjct: 60 QAS 62 >gi|70732095|ref|YP_261851.1| cold-shock domain-contain protein [Pseudomonas fluorescens Pf-5] gi|68346394|gb|AAY94000.1| cold-shock domain family protein [Pseudomonas fluorescens Pf-5] Length = 201 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 135 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 189 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 190 QAEDVIAALPR 200 >gi|89075964|ref|ZP_01162336.1| cold shock protein [Photobacterium sp. SKA34] gi|90581356|ref|ZP_01237152.1| cold shock protein [Vibrio angustum S14] gi|89048313|gb|EAR53892.1| cold shock protein [Photobacterium sp. SKA34] gi|90437466|gb|EAS62661.1| cold shock protein [Vibrio angustum S14] Length = 68 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFI S G DVF+H SA+ + G L EGQ V + V + G Sbjct: 6 GTVKWFNDDKGFGFI----SGTDGKDVFVHFSAIQAQGRRTLREGQSVEF-IVTDGQKGP 60 Query: 65 YSAENLKL 72 ++E + L Sbjct: 61 QASEVIAL 68 >gi|325676595|ref|ZP_08156273.1| cold shock transcription regulator protein [Rhodococcus equi ATCC 33707] gi|325552773|gb|EGD22457.1| cold shock transcription regulator protein [Rhodococcus equi ATCC 33707] Length = 98 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI PE + DVF H S + G +L E Q V+YD Q Sbjct: 35 GTVKWFNAEKGFGFIAPEDGSA---DVFAHYSEIQGGGFRSLDENQRVSYDLGQ 85 >gi|125602074|gb|EAZ41399.1| hypothetical protein OsJ_25920 [Oryza sativa Japonica Group] Length = 238 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 46/67 (68%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KG+GFITP+ + G+D+F+H+S++ S G +L +G +V + V + +G Sbjct: 7 KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEFS-VGSGNDG 62 Query: 64 KYSAENL 70 + A N+ Sbjct: 63 RTKAVNV 69 >gi|95929691|ref|ZP_01312433.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] gi|95134388|gb|EAT16045.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] Length = 66 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI ++G DVF+H SA+ S G +L EG V++D V G Sbjct: 3 EGTVKWFNDTKGFGFI----EQDNGPDVFVHFSAIQSEGFKSLAEGDRVSFD-VTEGQKG 57 Query: 64 KYSAENLKL 72 SA K+ Sbjct: 58 PQSANVCKI 66 >gi|302870196|ref|YP_003838833.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029] gi|315503526|ref|YP_004082413.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|330470396|ref|YP_004408139.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] gi|302573055|gb|ADL49257.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC 27029] gi|315410145|gb|ADU08262.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|328813367|gb|AEB47539.1| cold-shock DNA-binding domain protein [Verrucosispora maris AB-18-032] Length = 67 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI +G G DVF+H SA+ G L +GQ V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GQDVFVHFSAIEMDGYKALDDGQRVEFEIAQGQKGP 58 Query: 64 KYSAENLKLVP 74 + AE ++++ Sbjct: 59 Q--AERVRVIA 67 >gi|271967211|ref|YP_003341407.1| cold-shock DNA-binding domain-containing protein [Streptosporangium roseum DSM 43021] gi|270510386|gb|ACZ88664.1| putative cold-shock DNA-binding domain protein [Streptosporangium roseum DSM 43021] Length = 67 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N +KG+GFI P+ T DVF+H SA+ S G L E Q V++ Q Sbjct: 1 MSEGTVKWFNAEKGFGFIAPDDGTA---DVFVHYSAINSGGYRTLEENQRVSFTTTQ 54 >gi|89053585|ref|YP_509036.1| cold-shock DNA-binding protein family protein [Jannaschia sp. CCS1] gi|88863134|gb|ABD54011.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1] Length = 68 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G DVF+H SAV AG +L + +TY+ ++ +G+ Sbjct: 4 GTVKWFNTTKGFGFIAPD---DGGKDVFVHISAVERAGWSDLPDDTKLTYE-LREGRDGR 59 Query: 65 YSAENL 70 SA L Sbjct: 60 ESAVEL 65 >gi|152997616|ref|YP_001342451.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150838540|gb|ABR72516.1| putative cold-shock DNA-binding domain protein [Marinomonas sp. MWYL1] Length = 70 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI EG G DVF+H ++ +G L EGQ VT++ Q + Sbjct: 8 GIVKWFNDEKGFGFIEREG----GPDVFVHFRSINGSGRRTLQEGQKVTFEVTQGQKGPQ 63 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 64 --AENVTPV 70 >gi|315123024|ref|YP_004065030.1| cold shock protein [Pseudoalteromonas sp. SM9913] gi|315016784|gb|ADT70121.1| cold shock protein [Pseudoalteromonas sp. SM9913] Length = 69 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E+G DVF H SA+ S G L EGQ V + Q Sbjct: 7 GTVKWFNESKGFGFI----EQENGPDVFAHFSAIKSEGFKTLAEGQRVEFTLSQ 56 >gi|184200633|ref|YP_001854840.1| cold shock protein [Kocuria rhizophila DC2201] gi|183580863|dbj|BAG29334.1| cold shock protein [Kocuria rhizophila DC2201] Length = 67 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFITP+ ++ DVF+H S + S G L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFITPD---DADGDVFVHYSEIQSGGFRTLEENQRVEFEIGQ 54 >gi|149276323|ref|ZP_01882467.1| stress protein, member of the CspA-family [Pedobacter sp. BAL39] gi|149232843|gb|EDM38218.1| stress protein, member of the CspA-family [Pedobacter sp. BAL39] Length = 68 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N KG+GFITPE G D+F+H SA+A L EG V ++ ND Sbjct: 1 MRTTGKVKWFNSAKGFGFITPE---NGGKDIFVHFSAIAGDSFRELNEGDSVEFEL--ND 55 Query: 61 ANGKYSAENLKLV 73 A N+ ++ Sbjct: 56 GKKGPEAANVTVL 68 >gi|260494795|ref|ZP_05814925.1| cold shock domain-containing protein CspD [Fusobacterium sp. 3_1_33] gi|260197957|gb|EEW95474.1| cold shock domain-containing protein CspD [Fusobacterium sp. 3_1_33] Length = 71 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ + Sbjct: 7 KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVEFEITE 57 >gi|224367563|ref|YP_002601726.1| CspL [Desulfobacterium autotrophicum HRM2] gi|223690279|gb|ACN13562.1| CspL [Desulfobacterium autotrophicum HRM2] Length = 66 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW++ KG+GFI + G+DVF+H +A+ G L+EG+ V++D ND Sbjct: 3 QGTVKWFSDKKGFGFI----EQDEGNDVFVHHTAIDMPGFKTLSEGERVSFDIEDND 55 >gi|209520011|ref|ZP_03268789.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295676690|ref|YP_003605214.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|209499550|gb|EDZ99627.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295436533|gb|ADG15703.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] Length = 67 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G+D+F H S + + G +L E Q V+++ ++ GK Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRTEGFKSLQENQKVSFE-IKQGPKGK 59 Query: 65 YSAE 68 +A+ Sbjct: 60 QAAD 63 >gi|160938316|ref|ZP_02085671.1| hypothetical protein CLOBOL_03212 [Clostridium bolteae ATCC BAA-613] gi|158438689|gb|EDP16446.1| hypothetical protein CLOBOL_03212 [Clostridium bolteae ATCC BAA-613] Length = 65 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI S E G+DVF+H S + G +L EG V +D V N A G Sbjct: 2 KGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLDEGAEVEFDVV-NGAKG 56 Query: 64 KYSAENLKL 72 + KL Sbjct: 57 PQATNVTKL 65 >gi|147791391|emb|CAN59784.1| hypothetical protein VITISV_042163 [Vitis vinifera] Length = 247 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G ++W++ KG+GFITP E G+D+F+H+S++ S G +L EG+ V + V Sbjct: 8 GVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIV 57 >gi|77362000|ref|YP_341574.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125] gi|119470716|ref|ZP_01613384.1| Cold shock protein [Alteromonadales bacterium TW-7] gi|332533004|ref|ZP_08408874.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505] gi|76876911|emb|CAI89128.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125] gi|119446186|gb|EAW27464.1| Cold shock protein [Alteromonadales bacterium TW-7] gi|332037483|gb|EGI73936.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505] Length = 69 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E+G DVF H SA+ S G L EGQ V + Q Sbjct: 7 GTVKWFNESKGFGFI----EQENGPDVFAHFSAIKSEGFKTLAEGQRVEFTLSQ 56 >gi|330811400|ref|YP_004355862.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379508|gb|AEA70858.1| Putative transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 201 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 135 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 189 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 190 QAEDVIAALPR 200 >gi|322436156|ref|YP_004218368.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321163883|gb|ADW69588.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 92 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G + W++ KG+GF++ +G G DVF+H SA+ + G +L EG+ V++D VQ D G Sbjct: 6 GKVMWFSNAKGFGFLSRDG----GADVFVHFSAIVNDGYKSLAEGEDVSFDVVQGD-KGP 60 Query: 65 YSAENLKLVPKSSN 78 +AE ++V S+ Sbjct: 61 QAAEVRRVVMGSTQ 74 >gi|262377343|ref|ZP_06070567.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] gi|262307796|gb|EEY88935.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] Length = 69 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI ESG DVF H S + +G L EGQ V++ Q Sbjct: 7 GTVKWFNETKGFGFI----QQESGPDVFAHFSEITGSGFKTLVEGQKVSFSVAQ 56 >gi|163801254|ref|ZP_02195153.1| cold shock transcriptional regulator CspA [Vibrio sp. AND4] gi|159174743|gb|EDP59543.1| cold shock transcriptional regulator CspA [Vibrio sp. AND4] Length = 69 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 GS+KW+N KG+GF+T + + G DVF+H +A+ S G L EGQ V++ Sbjct: 6 GSVKWFNESKGFGFLTQD---DGGKDVFVHFNAIVSDGFKTLAEGQKVSF 52 >gi|119469529|ref|ZP_01612433.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Alteromonadales bacterium TW-7] gi|119447064|gb|EAW28334.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Alteromonadales bacterium TW-7] Length = 67 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M G +K++N KG+GFI E+G DVF+H SA++ +G L+EGQ VT+ Q Sbjct: 1 MSVSGKVKFFNEAKGFGFI----EQENGPDVFVHFSAISGSGFRTLSEGQAVTFSIKQ 54 >gi|19703863|ref|NP_603425.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|254304125|ref|ZP_04971483.1| cold shock protein CspC [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|256844890|ref|ZP_05550348.1| cold shock domain-containing protein CspD [Fusobacterium sp. 3_1_36A2] gi|294785827|ref|ZP_06751115.1| cold shock protein [Fusobacterium sp. 3_1_27] gi|296329383|ref|ZP_06871883.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714023|gb|AAL94724.1| Cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|148324317|gb|EDK89567.1| cold shock protein CspC [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|256718449|gb|EEU32004.1| cold shock domain-containing protein CspD [Fusobacterium sp. 3_1_36A2] gi|294487541|gb|EFG34903.1| cold shock protein [Fusobacterium sp. 3_1_27] gi|296153503|gb|EFG94321.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 71 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ + Sbjct: 7 KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVEFEITE 57 >gi|315126911|ref|YP_004068914.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas sp. SM9913] gi|315015425|gb|ADT68763.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas sp. SM9913] Length = 67 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N KG+GFI E+G DVF+H SA+ +G L+EGQ VT+ Q Sbjct: 1 MSVTGKVKFFNEAKGFGFI----EQENGPDVFVHFSAITGSGFRTLSEGQAVTFSIKQGQ 56 Query: 61 ANGKYSAENLKL 72 + AEN+++ Sbjct: 57 KGPE--AENVEV 66 >gi|296129427|ref|YP_003636677.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] gi|296021242|gb|ADG74478.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] Length = 67 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI + + G DVF+H SA+ + G +L EGQ V ++ Q Sbjct: 3 QGAVKWFNAEKGFGFIAQD---DGGADVFVHYSAIDTQGYRSLDEGQRVEFEITQ 54 >gi|254467917|ref|ZP_05081323.1| 'Cold-shock' DNA-binding domain, putative [beta proteobacterium KB13] gi|207086727|gb|EDZ64010.1| 'Cold-shock' DNA-binding domain, putative [beta proteobacterium KB13] Length = 67 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ +E D+F H S++ G +L EGQ VT++ V + Sbjct: 1 MAEGTVKWFNDAKGFGFITPDDGSE---DLFAHFSSITGDGYKSLKEGQRVTFE-VTDGP 56 Query: 62 NGKYSA 67 GK ++ Sbjct: 57 KGKQAS 62 >gi|90021554|ref|YP_527381.1| cold-shock DNA-binding protein family protein [Saccharophagus degradans 2-40] gi|89951154|gb|ABD81169.1| cold-shock DNA-binding protein family [Saccharophagus degradans 2-40] Length = 69 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KGYGFI+ EG G+D+F+H S + +G L EGQ V++ Sbjct: 7 GTVKWFNESKGYGFISREG----GNDLFVHFSNITGSGFKTLKEGQSVSF 52 >gi|262067005|ref|ZP_06026617.1| cold-shock domain protein [Fusobacterium periodonticum ATCC 33693] gi|291379265|gb|EFE86783.1| cold-shock domain protein [Fusobacterium periodonticum ATCC 33693] Length = 65 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ Sbjct: 2 KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVEFE 49 >gi|238758373|ref|ZP_04619551.1| Cold shock-like protein cspB [Yersinia aldovae ATCC 35236] gi|238703496|gb|EEP96035.1| Cold shock-like protein cspB [Yersinia aldovae ATCC 35236] Length = 66 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFITP + DVF+H SA+ S L EGQ V + +++ A G Sbjct: 3 GLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IESGAKGP 58 Query: 65 YSAENLKL 72 +A + L Sbjct: 59 AAANVVVL 66 >gi|152969470|ref|YP_001334579.1| DNA replication inhibitor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580364|ref|YP_002239468.1| cold shock domain protein CspD [Klebsiella pneumoniae 342] gi|238893942|ref|YP_002918676.1| cold shock-like protein [Klebsiella pneumoniae NTUH-K2044] gi|262041018|ref|ZP_06014238.1| cold-shock protein CspD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936316|ref|YP_003440375.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|290510628|ref|ZP_06549998.1| cold shock domain-containing protein CspD [Klebsiella sp. 1_1_55] gi|329998509|ref|ZP_08303131.1| cold shock domain protein CspD [Klebsiella sp. MS 92-3] gi|150954319|gb|ABR76349.1| DNA replication inhibitor, nucleic acid-binding domain [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569422|gb|ACI11198.1| cold shock domain protein CspD [Klebsiella pneumoniae 342] gi|238546258|dbj|BAH62609.1| cold shock-like protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041634|gb|EEW42685.1| cold-shock protein CspD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288891025|gb|ADC59343.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|289777344|gb|EFD85342.1| cold shock domain-containing protein CspD [Klebsiella sp. 1_1_55] gi|328538654|gb|EGF64751.1| cold shock domain protein CspD [Klebsiella sp. MS 92-3] Length = 73 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQAVRFDVHQ 54 >gi|149374597|ref|ZP_01892371.1| cold-shock DNA-binding domain family protein [Marinobacter algicola DG893] gi|149361300|gb|EDM49750.1| cold-shock DNA-binding domain family protein [Marinobacter algicola DG893] Length = 68 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFIT ESG DVF+H SA+ G L EGQ V ++ D Sbjct: 6 GTVKFFNEAKGFGFIT----RESGPDVFVHYSAIQGGGFKTLAEGQQV--EFTVTDGQKG 59 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 60 PQAENVVAV 68 >gi|26249026|ref|NP_755066.1| cold shock-like protein cspB [Escherichia coli CFT073] gi|218551643|ref|YP_002385435.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC 35469] gi|218561570|ref|YP_002394483.1| cold shock protein; Qin prophage [Escherichia coli S88] gi|300925265|ref|ZP_07141160.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|331680503|ref|ZP_08381162.1| conserved domain protein [Escherichia coli H591] gi|26109433|gb|AAN81636.1|AE016765_38 Cold shock-like protein cspB [Escherichia coli CFT073] gi|218359185|emb|CAQ91849.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC 35469] gi|218368339|emb|CAR06158.1| cold shock protein; Qin prophage [Escherichia coli S88] gi|300418598|gb|EFK01909.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|323190390|gb|EFZ75666.1| cold shock-like protein cspG [Escherichia coli RN587/1] gi|324112033|gb|EGC06011.1| cold-shock DNA-binding domain-containing protein [Escherichia fergusonii B253] gi|331071966|gb|EGI43302.1| conserved domain protein [Escherichia coli H591] Length = 71 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI+P + DVF+H SA+ + L EGQ VT+ V++ A G Sbjct: 7 GLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNFRTLFEGQKVTFS-VESGAKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|303285238|ref|XP_003061909.1| cold-shock DNA binding protein [Micromonas pusilla CCMP1545] gi|226456320|gb|EEH53621.1| cold-shock DNA binding protein [Micromonas pusilla CCMP1545] Length = 121 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KG+GFITP+ +E ++F+H+SA+ + G +L E + V Y ++D Sbjct: 6 GKVKWFNTQKGFGFITPDDGSE---EIFVHQSAIHAEGFRSLREEEPVEYTVEKSD 58 >gi|117618294|ref|YP_856386.1| cold shock domain-containing protein CspD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559701|gb|ABK36649.1| cold shock domain protein CspD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 72 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V ++ Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHDSTIQMEGYKTLKAGQAVNFELQQ 54 >gi|315282229|ref|ZP_07870683.1| conserved domain protein [Listeria marthii FSL S4-120] gi|313614131|gb|EFR87821.1| conserved domain protein [Listeria marthii FSL S4-120] Length = 66 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++K N +KG+GFI E+GDDVF+H SA+ G +L EGQ VT+D Sbjct: 1 MEQGTVKNPNAEKGFGFI----ERENGDDVFVHFSAIQGDGFKSLDEGQAVTFD 50 >gi|303242124|ref|ZP_07328614.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus CD2] gi|302590311|gb|EFL60069.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus CD2] Length = 66 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + RG +KW+N +KG+GFI +G G+DVF+H SA+ G L EG V ++ V+ Sbjct: 1 MERGRVKWFNAEKGFGFIERDG----GNDVFVHFSAINMDGYKTLEEGTEVQFEVVE 53 >gi|289643269|ref|ZP_06475394.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] gi|289506909|gb|EFD27883.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] Length = 67 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI+ +G G DVF+H SA+ G +L EGQ V + Q Sbjct: 3 QGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIDMDGYKSLEEGQRVEFQVTQ 54 >gi|254492585|ref|ZP_05105756.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga thiooxidans DMS010] gi|224462106|gb|EEF78384.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga thiooxydans DMS010] Length = 69 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI G DVF+H +A+ S G L EGQ VT + Q + Sbjct: 7 GTVKWFNDAKGFGFI----EQVDGPDVFVHHTAIKSEGFRTLKEGQAVTMEVTQGQKGPQ 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 --AENV 66 >gi|218297043|ref|ZP_03497720.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23] gi|218242598|gb|EED09135.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23] Length = 68 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +KGYGFI E G DVF+H +A+ + G L EG+ V ++ Sbjct: 1 MKKGTVKWFNAEKGYGFI----QQEEGPDVFVHFTAIEADGFRTLNEGEHVEFE 50 >gi|221504402|gb|EEE30077.1| glycine-rich protein, putative [Toxoplasma gondii VEG] Length = 209 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + RG KW++ KG+GFIT E G D+F+H++ + + G NL EG+ V + VQ Sbjct: 86 QIQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVG 140 Query: 61 ANGKYSA 67 +GK A Sbjct: 141 HDGKRKA 147 >gi|237841239|ref|XP_002369917.1| glycine-rich protein 2, putative [Toxoplasma gondii ME49] gi|211967581|gb|EEB02777.1| glycine-rich protein 2, putative [Toxoplasma gondii ME49] Length = 209 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + RG KW++ KG+GFIT E G D+F+H++ + + G NL EG+ V + VQ Sbjct: 86 QIQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVG 140 Query: 61 ANGKYSA 67 +GK A Sbjct: 141 HDGKRKA 147 >gi|254363164|ref|ZP_04979213.1| cold shock protein [Mannheimia haemolytica PHL213] gi|261493957|ref|ZP_05990465.1| cold shock protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494758|ref|ZP_05991237.1| cold shock protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|153095058|gb|EDN75609.1| cold shock protein [Mannheimia haemolytica PHL213] gi|261309575|gb|EEY10799.1| cold shock protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310389|gb|EEY11584.1| cold shock protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 70 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 6/70 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP+ + G DVF+H SA+ A+ G L +G V ++ +Q+ G Sbjct: 6 GTVKWFNATKGFGFITPD---QGGKDVFVHFSAIEANGGYRTLEDGAKVQFE-IQDSERG 61 Query: 64 KYSAENLKLV 73 SA N+K + Sbjct: 62 A-SAVNVKTI 70 >gi|78186132|ref|YP_374175.1| cold-shock DNA-binding domain-containing protein [Chlorobium luteolum DSM 273] gi|78166034|gb|ABB23132.1| cold-shock DNA-binding protein family [Chlorobium luteolum DSM 273] Length = 69 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N +KGYGFI G DVF+H SA+ +G L EGQ V+ + Q + Sbjct: 6 EGTVKWFNEEKGYGFI----QQGEGKDVFVHYSAINGSGRKTLVEGQKVSMEVTQGE 58 >gi|87118640|ref|ZP_01074539.1| probable cold-shock protein [Marinomonas sp. MED121] gi|86166274|gb|EAQ67540.1| probable cold-shock protein [Marinomonas sp. MED121] Length = 158 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GF+T ++G+DVF+H A+ G L EGQ V + YV GK Sbjct: 93 GTVKWFNSSKGFGFLTR----DNGEDVFVHYRAIRGRGRRFLIEGQQVRF-YVTEGEKGK 147 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 148 -QAENVSIL 155 >gi|256374377|ref|YP_003098037.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] gi|255918680|gb|ACU34191.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] Length = 67 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI +G G DVF+H +A+ ++G +L E Q VT++ Q + Sbjct: 4 GKVKWFNAEKGFGFIEQDG---GGPDVFVHFTAINASGYRSLEENQAVTFEVTQGPKGPQ 60 Query: 65 YSAENLK 71 AEN++ Sbjct: 61 --AENVQ 65 >gi|254429153|ref|ZP_05042860.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881] gi|196195322|gb|EDX90281.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881] Length = 84 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 5/74 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KGYGF+ P+ E G+D+F+H S + G +L GQ V Y+ VQ AN Sbjct: 4 GRVKWFNNAKGYGFVRPD---EGGEDLFVHYSYIQMDGYKSLKAGQPVEYE-VQ-PANKG 58 Query: 65 YSAENLKLVPKSSN 78 + A NL+ ++SN Sbjct: 59 FHAINLRANEEASN 72 >gi|116748014|ref|YP_844701.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697078|gb|ABK16266.1| cold-shock DNA-binding protein family [Syntrophobacter fumaroxidans MPOB] Length = 67 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G DVF+H SA+ AG +L EG+ V ++ Q Sbjct: 4 GRVKWFNEKKGYGFIETDGQ----GDVFVHYSAIEGAGFRSLNEGEQVRFEVEQ 53 >gi|77460636|ref|YP_350143.1| cold-shock DNA-binding protein [Pseudomonas fluorescens Pf0-1] gi|77384639|gb|ABA76152.1| putative cold shock protein [Pseudomonas fluorescens Pf0-1] Length = 200 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI S +SGDD+F+H A+ G L EGQ V + V N G Sbjct: 134 GTVKWFNTSKGFGFI----SRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKGL 188 Query: 65 YSAENLKLVPK 75 + + + +P+ Sbjct: 189 QAEDVIAALPR 199 >gi|325660793|ref|ZP_08149421.1| cold shock protein cspA [Lachnospiraceae bacterium 4_1_37FAA] gi|331085477|ref|ZP_08334562.1| cold shock protein cspA [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472867|gb|EGC76077.1| cold shock protein cspA [Lachnospiraceae bacterium 4_1_37FAA] gi|330407715|gb|EGG87213.1| cold shock protein cspA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 66 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW++ KGYGFI S E+G+DVF+H S + G L EGQ V ++ V A Sbjct: 1 MNKGTVKWFSNQKGYGFI----SDEAGNDVFVHYSGLNMEGFKTLEEGQAVEFE-VTEGA 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 KGPQAINVVKL 66 >gi|320355243|ref|YP_004196582.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus DSM 2032] gi|320123745|gb|ADW19291.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus DSM 2032] Length = 66 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI +G G DVF+H SA+ G +L EG+ V ++ V + A G Sbjct: 3 EGTVKWFNDSKGFGFIQQDG----GKDVFVHYSAIQGQGFKSLKEGERVKFEVV-SGAKG 57 Query: 64 KYSAENL 70 +AEN+ Sbjct: 58 P-AAENV 63 >gi|311694973|gb|ADP97846.1| cold-shock DNA-binding domain protein [marine bacterium HP15] Length = 103 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW+N KGYGFI +G + DD+F H S+V G L GQ VT+D +D Sbjct: 3 RGKVKWFNNAKGYGFIIEDGCS---DDLFAHFSSVQMDGYKTLKAGQAVTFDKKPSD 56 >gi|238916449|ref|YP_002929966.1| cold shock protein (beta-ribbon, CspA family) [Eubacterium eligens ATCC 27750] gi|238871809|gb|ACR71519.1| cold shock protein (beta-ribbon, CspA family) [Eubacterium eligens ATCC 27750] Length = 84 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI S ESG DVF+H S + G +L EG V +D V A G Sbjct: 21 KGTVKWFNNQKGYGFI----SDESGKDVFVHYSGLNMEGFKSLEEGAQVEFD-VTEGAKG 75 Query: 64 KYSAENLKL 72 + KL Sbjct: 76 PQATNVTKL 84 >gi|256391097|ref|YP_003112661.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256357323|gb|ACU70820.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 67 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFI +G G DVF+H SA++ +G NL E Q V ++ Q Sbjct: 4 GKVKWFNGEKGFGFIEQDGG---GPDVFVHFSAISGSGYRNLEENQAVEFNVTQ 54 >gi|152964189|ref|YP_001359973.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] gi|151358706|gb|ABS01709.1| putative cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] Length = 67 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFI +G G DVF+H SA+ G +L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIEQDG---GGPDVFVHYSAIGGNGYRSLEENQRVEFEVTQ 54 >gi|332668957|ref|YP_004451965.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi ATCC 484] gi|332337995|gb|AEE44578.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484] Length = 312 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 6/57 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH-RSAVASAGLFNLTEGQLVTYDYVQND 60 G++ WY+PDKG+GF++P+ + G+D+F+H RS V L L EG VTYD D Sbjct: 157 GTVTWYDPDKGFGFVSPD---DGGEDLFVHARSLVGD--LSELVEGDRVTYDVAAGD 208 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++ WY P KGYGF+ P+G G ++F+H SA+ G+ +TEGQ V + Sbjct: 81 GTVSWYEPTKGYGFVGPDG---GGPEIFVHSSAIVGGGV--ITEGQRVAF 125 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G + ++PD+G+GFITP+ G D+F+H S V + + L EG V + Q+D Sbjct: 251 GVVARFDPDRGFGFITPDA---GGPDLFVHVSVVRNGEV--LEEGDRVRFKVRQSD 301 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 4/58 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60 +G+++W++ ++G+GF++ + +D+F+H S V G L EGQ V ++ + D Sbjct: 3 QGTVRWFDAERGFGFLS---LGDEAEDLFVHASEIVGDDGPRVLREGQEVEFEVGEGD 57 >gi|325963821|ref|YP_004241727.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] gi|323469908|gb|ADX73593.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] Length = 67 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFITP+ +S DVF+H S + + G L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFITPD---DSDGDVFVHYSEIQTGGFKTLDENQRVQFEIGQ 54 >gi|290473777|ref|YP_003466651.1| Qin prophage; cold shock protein [Xenorhabdus bovienii SS-2004] gi|289173084|emb|CBJ79857.1| Qin prophage; cold shock protein [Xenorhabdus bovienii SS-2004] Length = 71 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFI+P+ ++ DVF+H SA+ S L EGQ V++ V++ A G Sbjct: 7 GTVKWFNSDKGFGFISPKDGSK---DVFVHFSAIQSNDYKTLDEGQEVSFS-VESGAKGP 62 Query: 65 YSAENL 70 SA N+ Sbjct: 63 -SATNV 67 >gi|255545420|ref|XP_002513770.1| cold shock protein, putative [Ricinus communis] gi|223546856|gb|EEF48353.1| cold shock protein, putative [Ricinus communis] Length = 184 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW++ KG+GFI P+ + G+D+F+H++++ S G L+EGQ V + Sbjct: 9 GTVKWFSAQKGFGFIAPD---DGGEDLFVHQTSIQSDGFRTLSEGQPVEF 55 >gi|326795949|ref|YP_004313769.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] gi|326546713|gb|ADZ91933.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] Length = 69 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI ESG DVF H SA+ +G L EGQ V + Q Sbjct: 7 GTVKWFNESKGFGFI----EQESGPDVFAHFSAITGSGFKTLAEGQKVEFTVGQ 56 >gi|221483569|gb|EEE21881.1| glycine-rich protein, putative [Toxoplasma gondii GT1] Length = 209 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + RG KW++ KG+GFIT E G D+F+H++ + + G NL EG+ V + VQ Sbjct: 86 QIQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVG 140 Query: 61 ANGKYSA 67 +GK A Sbjct: 141 HDGKRKA 147 >gi|39997003|ref|NP_952954.1| cold shock domain-contain protein [Geobacter sulfurreducens PCA] gi|39983891|gb|AAR35281.1| cold shock domain family protein [Geobacter sulfurreducens PCA] gi|298506020|gb|ADI84743.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens KN400] Length = 66 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N KG+GFI ++G+DVF+H SA+ G +L EG+ V++D V Sbjct: 4 GRVKWFNDAKGFGFI----EQDNGEDVFVHFSAIQQDGFKSLAEGEQVSFDVV 52 >gi|68171539|ref|ZP_00544918.1| Cold-shock protein, DNA-binding [Ehrlichia chaffeensis str. Sapulpa] gi|88658217|ref|YP_507119.1| CSD family cold shock protein [Ehrlichia chaffeensis str. Arkansas] gi|67999044|gb|EAM85716.1| Cold-shock protein, DNA-binding [Ehrlichia chaffeensis str. Sapulpa] gi|88599674|gb|ABD45143.1| cold shock protein, CSD family [Ehrlichia chaffeensis str. Arkansas] Length = 88 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 9/77 (11%) Query: 5 GSIKWYNPDKGYGFITPEGST-------ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW++ +KGYGFI + + D+F+H +A+ + + L EGQ V Y Sbjct: 13 GYVKWFSSEKGYGFICKDQGNNKIRNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQLD 72 Query: 58 QNDANGKYSAENLKLVP 74 +N NGK+SA NL+L+ Sbjct: 73 KN--NGKFSAVNLELLE 87 >gi|118602909|ref|YP_904124.1| cold-shock DNA-binding protein family protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567848|gb|ABL02653.1| cold-shock DNA-binding protein family [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 4/60 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW++ KG+GFI E+GDDVF+H A+ G +L EGQ V +D Q + Sbjct: 1 MSTTGKVKWFDAKKGFGFI----EQENGDDVFVHFRAIQGDGYKSLEEGQEVEFDLEQGE 56 >gi|78062299|ref|YP_372207.1| cold-shock DNA-binding protein family protein [Burkholderia sp. 383] gi|107026255|ref|YP_623766.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia AU 1054] gi|116692558|ref|YP_838091.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia HI2424] gi|170738189|ref|YP_001779449.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|206563468|ref|YP_002234231.1| putative DNA-binding cold-shock protein [Burkholderia cenocepacia J2315] gi|77970184|gb|ABB11563.1| cold-shock DNA-binding protein family [Burkholderia sp. 383] gi|105895629|gb|ABF78793.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia AU 1054] gi|116650558|gb|ABK11198.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia HI2424] gi|169820377|gb|ACA94959.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia MC0-3] gi|198039508|emb|CAR55475.1| putative DNA-binding cold-shock protein [Burkholderia cenocepacia J2315] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI+P+ GDD+F H S + G L EGQ V+++ Sbjct: 4 GTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSFE 51 >gi|294633715|ref|ZP_06712273.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292830357|gb|EFF88708.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI +G G DVF H S ++ G L EG+ VT+D Q + Sbjct: 4 GTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNISGNGYRELVEGEPVTFDVTQGQKGPQ 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 --AENI 64 >gi|322420109|ref|YP_004199332.1| cold-shock DNA-binding domain-containing protein [Geobacter sp. M18] gi|320126496|gb|ADW14056.1| cold-shock DNA-binding domain protein [Geobacter sp. M18] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI ++G+DVF+H SA+ G +L EG+ V++D V N G Sbjct: 3 QGKVKWFNDAKGFGFI----EQDNGEDVFVHFSAITGEGFKSLAEGESVSFD-VTNGPKG 57 Query: 64 KYSAENLKLV 73 A N+K + Sbjct: 58 -LQAANVKKI 66 >gi|237739959|ref|ZP_04570440.1| cold shock protein [Fusobacterium sp. 2_1_31] gi|237741555|ref|ZP_04572036.1| cold shock protein [Fusobacterium sp. 4_1_13] gi|294782948|ref|ZP_06748274.1| hypothetical protein HMPREF0400_00932 [Fusobacterium sp. 1_1_41FAA] gi|229421976|gb|EEO37023.1| cold shock protein [Fusobacterium sp. 2_1_31] gi|229429203|gb|EEO39415.1| cold shock protein [Fusobacterium sp. 4_1_13] gi|294481589|gb|EFG29364.1| hypothetical protein HMPREF0400_00932 [Fusobacterium sp. 1_1_41FAA] Length = 66 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ + Sbjct: 2 KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVEFEITE 52 >gi|86738977|ref|YP_479377.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3] gi|111220090|ref|YP_710884.1| cold-shock protein [Frankia alni ACN14a] gi|158318310|ref|YP_001510818.1| cold-shock DNA-binding domain-containing protein [Frankia sp. EAN1pec] gi|86565839|gb|ABD09648.1| cold-shock DNA-binding protein family [Frankia sp. CcI3] gi|111147622|emb|CAJ59277.1| Cold-shock protein; nucleic acid-binding domain [Frankia alni ACN14a] gi|158113715|gb|ABW15912.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI+ +G G DVF+H SA+ G L EGQ V + Q Sbjct: 3 QGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIQMDGYKALEEGQRVEFQVTQ 54 >gi|299065287|emb|CBJ36455.1| cold shock/stress protein, member of the Csp-family [Ralstonia solanacearum CMR15] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G++KW+N KG+GFITP+ G+D+F H S + +G L EGQ V Y Sbjct: 1 METGTVKWFNESKGFGFITPDA---GGNDLFAHFSEIQGSGFKTLQEGQKVRY 50 >gi|255525596|ref|ZP_05392530.1| cold-shock DNA-binding domain protein [Clostridium carboxidivorans P7] gi|296185483|ref|ZP_06853893.1| cold-shock DNA-binding domain protein [Clostridium carboxidivorans P7] gi|255510686|gb|EET86992.1| cold-shock DNA-binding domain protein [Clostridium carboxidivorans P7] gi|296050317|gb|EFG89741.1| cold-shock DNA-binding domain protein [Clostridium carboxidivorans P7] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 5/56 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQN 59 G +KW+N +KG+GFI S E G DVF+H SA+ G +L+EGQ V YD ++ Sbjct: 4 GVVKWFNDEKGFGFI----SGEDGTDVFVHYSAIKEEGKRKDLSEGQQVQYDVIET 55 >gi|197119112|ref|YP_002139539.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|197088472|gb|ACH39743.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] Length = 68 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI ++G+DVF+H SA+ G +L EG+ V++D V N G Sbjct: 3 QGKVKWFNDAKGFGFI----EQDNGEDVFVHFSAITGDGFKSLAEGESVSFD-VTNGPKG 57 Query: 64 KYSAENLKL 72 +A KL Sbjct: 58 LQAANVKKL 66 >gi|113869008|ref|YP_727497.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] gi|113527784|emb|CAJ94129.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] Length = 68 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI P+ E +++F H SA+ +G L EGQ V+++ VQ Sbjct: 4 GIVKWFNDAKGFGFIKPD---EGEEELFAHFSAIQMSGFKTLKEGQRVSFEVVQ 54 >gi|110833014|ref|YP_691873.1| cold-shock protein [Alcanivorax borkumensis SK2] gi|254427611|ref|ZP_05041318.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881] gi|110646125|emb|CAL15601.1| cold-shock protein [Alcanivorax borkumensis SK2] gi|196193780|gb|EDX88739.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881] Length = 68 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KG+GF+ E+G DVF H SA+ +G L EGQ V + Q Sbjct: 5 KGTVKWFNEAKGFGFL----EQENGPDVFAHFSAITGSGFKTLAEGQAVEFTVTQ 55 >gi|239994277|ref|ZP_04714801.1| stress response protein CspD [Alteromonas macleodii ATCC 27126] Length = 72 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI PE + G+D+F H S + G +L GQ VT++ VQ G Sbjct: 4 GKVKWFNNAKGFGFIVPE---DGGEDIFAHYSTIQMEGYRSLKAGQEVTFE-VQQGPKGL 59 Query: 65 YSAENL 70 + AEN+ Sbjct: 60 H-AENI 64 >gi|320333925|ref|YP_004170636.1| cold-shock DNA-binding domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319755214|gb|ADV66971.1| cold-shock DNA-binding domain protein [Deinococcus maricopensis DSM 21211] Length = 86 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI +GS DVF H SA+ +AG L EG V +D + Sbjct: 4 GRVKWFNAEKGFGFIEVDGSP----DVFAHFSAIKAAGFKKLNEGDEVEFDIEEGQRGKG 59 Query: 65 YSAENL---KLVPKS 76 A N+ K P+S Sbjct: 60 PQAANIVVTKAAPES 74 >gi|237745018|ref|ZP_04575499.1| cold shock protein [Fusobacterium sp. 7_1] gi|256028777|ref|ZP_05442611.1| cold shock protein [Fusobacterium sp. D11] gi|289766681|ref|ZP_06526059.1| cold shock protein [Fusobacterium sp. D11] gi|229432247|gb|EEO42459.1| cold shock protein [Fusobacterium sp. 7_1] gi|289718236|gb|EFD82248.1| cold shock protein [Fusobacterium sp. D11] Length = 66 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ + Sbjct: 2 KGTVKWFNKEKGFGFITG----EDGKDVFAHFSQIQKEGFKELFEGQEVEFEITE 52 >gi|4454361|emb|CAA72659.1| cold shock protein, CSPA [Vibrio cholerae] Length = 70 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 GS+KW+N KG+GF+T + G+DVF+H +++ S G L EGQ V++ Sbjct: 7 GSVKWFNETKGFGFLTQD---NGGNDVFVHLNSIQSEGFKTLAEGQRVSF 53 >gi|116671146|ref|YP_832079.1| cold-shock DNA-binding protein family protein [Arthrobacter sp. FB24] gi|220913078|ref|YP_002488387.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|116611255|gb|ABK03979.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24] gi|219859956|gb|ACL40298.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFITP+ +S DVF+H S + + G L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFITPD---DSDGDVFVHYSEIQTGGFKTLDENQRVQFEIGQ 54 >gi|329895883|ref|ZP_08271211.1| Cold shock protein CspE [gamma proteobacterium IMCC3088] gi|328922101|gb|EGG29460.1| Cold shock protein CspE [gamma proteobacterium IMCC3088] Length = 68 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI EG G DVF+H SA+ G L +GQ V +D D Sbjct: 6 GTVKWFNETKGFGFIEREG----GPDVFVHFSAIKGDGFKTLADGQKVEFDV--TDGQKG 59 Query: 65 YSAENL 70 AEN+ Sbjct: 60 PQAENV 65 >gi|302824155|ref|XP_002993723.1| hypothetical protein SELMODRAFT_187582 [Selaginella moellendorffii] gi|300138447|gb|EFJ05215.1| hypothetical protein SELMODRAFT_187582 [Selaginella moellendorffii] Length = 165 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N KG+GFITP+ + G+D+F+H+S++ + G +L +G+ V + Sbjct: 10 GKVKWFNSAKGFGFITPD---DGGEDLFVHQSSIHADGFRSLKDGEAVEF 56 >gi|195648068|gb|ACG43502.1| glycine-rich protein 2b [Zea mays] Length = 208 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFITP+ +E D+F+H+S++ S G +L +G V Y Sbjct: 8 GTVKWFNGTKGFGFITPDDGSE---DLFVHQSSIKSDGYRSLNDGDAVEY 54 >gi|226531123|ref|NP_001151606.1| LOC100285240 [Zea mays] gi|195638850|gb|ACG38893.1| glycine-rich protein 2b [Zea mays] Length = 208 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFITP+ +E D+F+H+S++ S G +L +G V Y Sbjct: 8 GTVKWFNGTKGFGFITPDDGSE---DLFVHQSSIKSDGYRSLNDGDAVEY 54 >gi|195609518|gb|ACG26589.1| glycine-rich protein 2b [Zea mays] Length = 208 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFITP+ +E D+F+H+S++ S G +L +G V Y Sbjct: 8 GTVKWFNGTKGFGFITPDDGSE---DLFVHQSSIKSDGYRSLNDGDAVEY 54 >gi|41406767|ref|NP_959603.1| CspA_2 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118467308|ref|YP_880121.1| hypothetical protein MAV_0852 [Mycobacterium avium 104] gi|254773743|ref|ZP_05215259.1| hypothetical protein MaviaA2_03582 [Mycobacterium avium subsp. avium ATCC 25291] gi|41395117|gb|AAS02986.1| CspA_2 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118168595|gb|ABK69492.1| conserved domain protein [Mycobacterium avium 104] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFITP+ T+ D+F+H S + +G +L E Q V +D V+ A G Sbjct: 3 QGTVKWFNGEKGFGFITPDDGTK---DLFVHYSEIQGSGYRSLDENQRVQFD-VEQGAKG 58 >gi|323356496|ref|YP_004222892.1| cold shock proteins [Microbacterium testaceum StLB037] gi|323272867|dbj|BAJ73012.1| cold shock proteins [Microbacterium testaceum StLB037] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFI P+ + D+F H SA+ G LTE Q V +D Q Sbjct: 4 GTVKWFNSEKGYGFIAPD---DGSADLFAHFSAIQGNGFKELTEAQKVEFDAEQ 54 >gi|194292370|ref|YP_002008277.1| cold shock protein, transcription antiterminator, affects expression of rpos and uspa [Cupriavidus taiwanensis LMG 19424] gi|193226274|emb|CAQ72223.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Cupriavidus taiwanensis LMG 19424] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G++KW+N KG+GFITP+ G+D+F H S + +G +L EGQ V Y Sbjct: 1 METGTVKWFNDSKGFGFITPD---AGGNDLFAHFSEIQGSGFKSLAEGQKVRY 50 >gi|331698444|ref|YP_004334683.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326953133|gb|AEA26830.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans CB1190] Length = 315 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++ WY P KGYGF +P+G G D+F+H SA+ + G+ +TEGQ V + Sbjct: 81 GTVNWYEPGKGYGFASPDG---GGADIFVHSSAIVTGGV--VTEGQRVAF 125 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60 +G+++W++ D+G+GF+ PE + DVF+H S V G L EGQ V ++ +ND Sbjct: 3 QGTVRWFDADRGFGFLAPE---DGSPDVFVHASEIVGGGGAKALREGQAVVFEIGEND 57 Score = 40.8 bits (94), Expect = 0.070, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 4/50 (8%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ WY+ D+G+GFI P+ DVF+H A+A GL L EG V Y+ Sbjct: 161 TVAWYDEDRGFGFIDPD---SGAGDVFVHARALAE-GLTWLAEGDRVAYE 206 Score = 37.4 bits (85), Expect = 0.79, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G + Y+ D+G+GFITP+ GDD+F H S + G L +G V Y Q+D Sbjct: 254 GVVARYDEDRGFGFITPDA---GGDDLFAHVSVI--MGSEPLQKGDRVRYAVRQSD 304 >gi|262040627|ref|ZP_06013865.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041991|gb|EEW43024.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 70 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N DKG+GFITP+ ++ D+F+H SA+ + G +L EGQ V++ Sbjct: 7 GIVKWFNADKGFGFITPDDGSK---DLFVHFSAIQNDGYKSLDEGQKVSF 53 >gi|229076838|ref|ZP_04209743.1| Cold shock protein 2 [Bacillus cereus Rock4-18] gi|228706282|gb|EEL58550.1| Cold shock protein 2 [Bacillus cereus Rock4-18] Length = 66 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW+N DKG+GFI G DVF+H SA+ G +L EGQ VT++ Q Sbjct: 1 MEQGKVKWFNADKGFGFI----ERADGADVFVHFSAIQIDGYKSLDEGQSVTFEVEQ 53 >gi|87119420|ref|ZP_01075317.1| Cold shock protein [Marinomonas sp. MED121] gi|86164896|gb|EAQ66164.1| Cold shock protein [Marinomonas sp. MED121] Length = 69 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 8/73 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++K++N KG+GFIT + G DVF+H SA+ S+G L EGQ V + A Sbjct: 4 VVTGTVKFFNETKGFGFIT----QDKGPDVFVHFSAINSSGFKTLAEGQKVEFQV----A 55 Query: 62 NGKYSAENLKLVP 74 +GK E + P Sbjct: 56 DGKKGPEAQNVTP 68 >gi|54309149|ref|YP_130169.1| putative cold shock-like protein [Photobacterium profundum SS9] gi|90410345|ref|ZP_01218361.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|46913581|emb|CAG20367.1| putative Cold shock-like protein [Photobacterium profundum SS9] gi|90328586|gb|EAS44870.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] Length = 69 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H A+ G +L EGQ V++D Q Sbjct: 6 GIVKWFNDEKGFGFITQD---NGGADVFVHFRAITGDGFKSLAEGQKVSFDVEQ 56 >gi|238026086|ref|YP_002910317.1| Cold shock-like protein CspD [Burkholderia glumae BGR1] gi|330815379|ref|YP_004359084.1| Cold shock-like protein CspD [Burkholderia gladioli BSR3] gi|237875280|gb|ACR27613.1| Cold shock-like protein CspD [Burkholderia glumae BGR1] gi|327367772|gb|AEA59128.1| Cold shock-like protein CspD [Burkholderia gladioli BSR3] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITPEG GDD+F H S + G L E Q V ++ Sbjct: 4 GTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVDGFKTLQENQKVEFE 51 >gi|254503760|ref|ZP_05115911.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] gi|222439831|gb|EEE46510.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] Length = 66 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 7/73 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+H G++KW++ +G G I PE GDD+ + +A+ +G+ +L EGQLV +D Sbjct: 1 MLH-GNVKWFDKGRGVGTIEPE----DGDDILVDITALRRSGIDSLKEGQLVAFDLEWR- 54 Query: 61 ANGKYSAENLKLV 73 G+ AE+LK++ Sbjct: 55 -RGQMVAEDLKVL 66 >gi|15596158|ref|NP_249652.1| cold-shock protein [Pseudomonas aeruginosa PAO1] gi|218893068|ref|YP_002441937.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58] gi|254239310|ref|ZP_04932633.1| hypothetical protein PACG_05506 [Pseudomonas aeruginosa C3719] gi|9946868|gb|AAG04350.1|AE004530_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1] gi|126171241|gb|EAZ56752.1| hypothetical protein PACG_05506 [Pseudomonas aeruginosa C3719] gi|218773296|emb|CAW29108.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58] Length = 63 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +KW+N KG+GFI S +SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 1 MKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 50 >gi|325499887|gb|EGC97746.1| cold shock-like protein cspB [Escherichia fergusonii ECD227] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI+P + DVF+H SA+ + L EGQ VT+ V++ A G Sbjct: 3 GLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNFRTLFEGQKVTFS-VESGAKGP 58 Query: 65 YSA 67 +A Sbjct: 59 AAA 61 >gi|312200656|ref|YP_004020717.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] gi|311231992|gb|ADP84847.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] Length = 67 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KG+GFI+ +G G DVF+H SA+ G +L EGQ V + Q Sbjct: 3 QGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIDMDGYKSLEEGQRVEFQVTQG 55 >gi|91226269|ref|ZP_01261109.1| cold shock protein [Vibrio alginolyticus 12G01] gi|91189280|gb|EAS75559.1| cold shock protein [Vibrio alginolyticus 12G01] Length = 70 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N +KG+GFIT + G D+F+H +++S G L EGQ V+++ V+ G Sbjct: 7 GSVKWFNENKGFGFITKD---SDGKDIFVHFRSISSDGFKTLLEGQKVSFE-VEPGEKGP 62 Query: 65 YSAENLKLV 73 + A N+ L+ Sbjct: 63 H-ATNVALI 70 >gi|73663810|ref|YP_302589.1| cold shock protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496387|dbj|BAE19644.1| cold shock protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 66 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ G++KW+N +KG+GFI E+G D+F+H S + + G +L EGQ V +D + Sbjct: 1 MNNGTVKWFNAEKGFGFI----ERENGSDLFVHFSGIVAEGYKSLEEGQKVEFDITE 53 >gi|225431120|ref|XP_002266115.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 241 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G ++W++ KG+GFITP E G+D+F+H+S++ S G +L EG+ V + V Sbjct: 8 GVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIV 57 >gi|218778357|ref|YP_002429675.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759741|gb|ACL02207.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 66 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI E G DVF+H +A+ G L EG V++D Q Sbjct: 4 GTVKWFNDAKGYGFI----EQEEGGDVFVHYTAITGKGFRTLAEGDRVSFDVEQ 53 >gi|145299398|ref|YP_001142239.1| cold shock domain-containing protein CspD [Aeromonas salmonicida subsp. salmonicida A449] gi|330829988|ref|YP_004392940.1| Cold shock-like protein cspD [Aeromonas veronii B565] gi|142852170|gb|ABO90491.1| cold shock domain protein CspD [Aeromonas salmonicida subsp. salmonicida A449] gi|328805124|gb|AEB50323.1| Cold shock-like protein cspD [Aeromonas veronii B565] Length = 72 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V ++ Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMEGYKTLKAGQAVNFELQQ 54 >gi|49082320|gb|AAT50560.1| PA0961 [synthetic construct] Length = 64 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +KW+N KG+GFI S +SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 1 MKWFNTSKGFGFI----SRDSGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRD 50 >gi|15644617|ref|NP_229670.1| cold shock protein [Thermotoga maritima MSB8] gi|148270057|ref|YP_001244517.1| cold-shock DNA-binding domain-containing protein [Thermotoga petrophila RKU-1] gi|170288741|ref|YP_001738979.1| cold-shock DNA-binding domain-containing protein [Thermotoga sp. RQ2] gi|281412062|ref|YP_003346141.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila RKU-10] gi|4982460|gb|AAD36936.1|AE001824_5 cold shock protein [Thermotoga maritima MSB8] gi|147735601|gb|ABQ46941.1| cold-shock DNA-binding protein family [Thermotoga petrophila RKU-1] gi|170176244|gb|ACB09296.1| cold-shock DNA-binding domain protein [Thermotoga sp. RQ2] gi|281373165|gb|ADA66727.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila RKU-10] Length = 66 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 5/60 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW++ KGYGFIT E+G+D+F+H SA+ G L E + V ++ VQ G Sbjct: 2 RGTVKWFDSKKGYGFIT----MENGEDIFVHWSAIQMDGFKTLRENETVEFE-VQKGTKG 56 >gi|330445023|ref|ZP_08308677.1| transcription antiterminator and regulator of RNA stability [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493141|dbj|GAA03174.1| transcription antiterminator and regulator of RNA stability [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 68 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFI S G DVF+H SA+ + G L EGQ V + V + G Sbjct: 6 GTVKWFNDDKGFGFI----SGADGKDVFVHFSAIQAQGRRTLREGQSVEF-IVTDGQKGP 60 Query: 65 YSAENLKL 72 ++E + L Sbjct: 61 QASEVVAL 68 >gi|307726451|ref|YP_003909664.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1003] gi|307586976|gb|ADN60373.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + GDD+F H S + G L E Q V+++ Q Sbjct: 4 GTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIKGNGFKTLAENQKVSFETKQ 54 >gi|240146141|ref|ZP_04744742.1| putative cold shock protein [Roseburia intestinalis L1-82] gi|257201740|gb|EEV00025.1| putative cold shock protein [Roseburia intestinalis L1-82] gi|291537505|emb|CBL10617.1| cold-shock DNA-binding protein family [Roseburia intestinalis M50/1] gi|291540033|emb|CBL13144.1| cold-shock DNA-binding protein family [Roseburia intestinalis XB6B4] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +++G++KW+N KGYGFI S E G+DVF+H S + G +L EG V ++ V+ Sbjct: 1 MNKGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLEEGATVEFEVVE 53 >gi|224012555|ref|XP_002294930.1| cold-shock DNA-binding domain-containing protein [Thalassiosira pseudonana CCMP1335] gi|220969369|gb|EED87710.1| cold-shock DNA-binding domain-containing protein [Thalassiosira pseudonana CCMP1335] Length = 102 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KGYGFITP +D+F+H+S++ G L EG V ++ + +D +GK Sbjct: 7 GNVKWFSNKKGYGFITPAEGATVAEDIFVHQSSIHCDGYRTLDEGWEVEFE-IGHDDDGK 65 Query: 65 YSA 67 A Sbjct: 66 VKA 68 >gi|62180569|ref|YP_216986.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128202|gb|AAX65905.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715045|gb|EFZ06616.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 136 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+NP+KG+GFITP+ + DVF+H SA+ S L E Q V + Q Sbjct: 7 GLVKWFNPEKGFGFITPK---DGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQ 57 >gi|26990715|ref|NP_746140.1| cold-shock protein CspD [Pseudomonas putida KT2440] gi|24985709|gb|AAN69604.1|AE016594_1 cold-shock protein CspD [Pseudomonas putida KT2440] Length = 88 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI EG + DD+F H SA+ G L GQ V ++ VQ Sbjct: 4 GKVKWFNNAKGYGFINEEGKS---DDLFAHYSAIQMDGYKTLKAGQAVVFNIVQ 54 >gi|317506528|ref|ZP_07964325.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255167|gb|EFV14440.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 68 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 5/65 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW+N +KG+GFITP+ + G D+F+H SA+ S G L E Q V ++ VQ Sbjct: 3 QGTVKWFNEEKGFGFITPD---DGGKDLFVHFSAITGSTGFRTLQENQRVQFE-VQASDR 58 Query: 63 GKYSA 67 G +A Sbjct: 59 GPQAA 63 >gi|209520217|ref|ZP_03268987.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|209499333|gb|EDZ99418.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ GDD+F H S ++ G L E Q V+Y+ Sbjct: 4 GTVKWFNDSKGFGFITPD---NGGDDLFAHFSEISGDGFKTLAENQKVSYE 51 >gi|152997268|ref|YP_001342103.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150838192|gb|ABR72168.1| putative cold-shock DNA-binding domain protein [Marinomonas sp. MWYL1] Length = 87 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H GS+KW+N KGYGFI E E D+F+H SA+ G L GQ VT++ V+ Sbjct: 1 MHHGSVKWFNNAKGYGFIVSEDFNE---DLFIHYSAINIEGYKTLKAGQAVTFN-VEPGE 56 Query: 62 NGKYSAENLKLVPKSS 77 G ++ E PK + Sbjct: 57 RGLHAIEINPTSPKET 72 >gi|52842335|ref|YP_096134.1| cold shock DNA binding domain-containing protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54297985|ref|YP_124354.1| hypothetical protein lpp2041 [Legionella pneumophila str. Paris] gi|148359631|ref|YP_001250838.1| cold shock DNA binding domain-containing protein [Legionella pneumophila str. Corby] gi|296107674|ref|YP_003619375.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy] gi|52629446|gb|AAU28187.1| cold shock DNA binding domain protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751770|emb|CAH13193.1| hypothetical protein lpp2041 [Legionella pneumophila str. Paris] gi|148281404|gb|ABQ55492.1| cold shock DNA binding domain protein [Legionella pneumophila str. Corby] gi|295649576|gb|ADG25423.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy] Length = 69 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI EG G DVF H ++S+G LTEGQ V + Q Sbjct: 7 GVVKWFNEIKGFGFIEQEG----GPDVFAHFKEISSSGFKTLTEGQRVQFIVTQ 56 >gi|284046448|ref|YP_003396788.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] gi|283950669|gb|ADB53413.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW++ DKG+GFITP+ ++ D+F+H + + S G +L EG V+YD Sbjct: 4 GTVKWFSDDKGFGFITPDDQSK---DLFVHHTGIISDGYRSLPEGAKVSYD 51 >gi|269961818|ref|ZP_06176175.1| cold shock domain family protein [Vibrio harveyi 1DA3] gi|269833396|gb|EEZ87498.1| cold shock domain family protein [Vibrio harveyi 1DA3] Length = 70 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GF+T + G DVF+H +A+ + G L EGQ V++ N +GK Sbjct: 7 GSVKWFNETKGFGFLTQD---NGGQDVFVHFNAIVADGFKTLAEGQKVSF----NVEDGK 59 Query: 65 YSAENLKLVP 74 + ++ P Sbjct: 60 KGPQATEVTP 69 >gi|188591773|ref|YP_001796372.1| major cold shock protein [Cupriavidus taiwanensis] gi|170939168|emb|CAP64206.1| major cold shock protein [Cupriavidus taiwanensis LMG 19424] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KGYGFITP+ + G D+F H + AG +L EG V ++ Q Sbjct: 4 GIVKWFNSEKGYGFITPD---DGGKDLFAHYKEIQGAGFKSLEEGAKVEFEITQ 54 >gi|330446013|ref|ZP_08309665.1| 'Cold-shock' DNA-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490204|dbj|GAA04162.1| 'Cold-shock' DNA-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 69 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFIT + G DVF+H A+ G L EGQ V+++ Q Sbjct: 6 GTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLAEGQKVSFETEQ 56 >gi|262198097|ref|YP_003269306.1| cold-shock DNA-binding domain protein [Haliangium ochraceum DSM 14365] gi|262081444|gb|ACY17413.1| cold-shock DNA-binding domain protein [Haliangium ochraceum DSM 14365] Length = 94 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI E G DVF+H S + + G LTEG++V Y+ +Q G Sbjct: 4 GAVKWFNNVKGYGFIL----REDGQDVFVHWSNILADGYRLLTEGEIVEYE-LQEGPKGL 58 Query: 65 YSAENLKLVPKS 76 ++A+ P S Sbjct: 59 FAAQVKSRDPSS 70 >gi|257067904|ref|YP_003154159.1| cold-shock DNA-binding protein family [Brachybacterium faecium DSM 4810] gi|256558722|gb|ACU84569.1| cold-shock DNA-binding protein family [Brachybacterium faecium DSM 4810] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G + W+N DKGYGFI PE + DVF H SA+ +G +L E Q V +D Q Sbjct: 4 GIVTWFNSDKGYGFIAPEDGSA---DVFAHFSAIVGSGRRDLEENQRVEFDVEQ 54 >gi|315221882|ref|ZP_07863794.1| cold-shock DNA-binding domain protein [Streptococcus anginosus F0211] gi|315189115|gb|EFU22818.1| cold-shock DNA-binding domain protein [Streptococcus anginosus F0211] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI S E+G DVF H SA+ S G +L EG V ++ Sbjct: 3 QGTVKWFNAEKGFGFI----SQENGPDVFAHFSAIQSDGFKSLNEGDKVMFN 50 >gi|302822137|ref|XP_002992728.1| hypothetical protein SELMODRAFT_186937 [Selaginella moellendorffii] gi|300139469|gb|EFJ06209.1| hypothetical protein SELMODRAFT_186937 [Selaginella moellendorffii] Length = 159 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N KG+GFITP+ + G+D+F+H+S++ + G +L +G+ V + Sbjct: 10 GKVKWFNSAKGFGFITPD---DGGEDLFVHQSSIHADGFRSLKDGEAVEF 56 >gi|293396849|ref|ZP_06641123.1| cold shock domain protein CspD [Serratia odorifera DSM 4582] gi|291420320|gb|EFE93575.1| cold shock domain protein CspD [Serratia odorifera DSM 4582] Length = 73 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVRFDVHQ 54 >gi|126740669|ref|ZP_01756355.1| cold shock family protein [Roseobacter sp. SK209-2-6] gi|126718184|gb|EBA14900.1| cold shock family protein [Roseobacter sp. SK209-2-6] Length = 68 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ E G DVF+H S V +GL L + V Y+ + +G+ Sbjct: 4 GTVKWFNTTKGFGFIEPD---EGGKDVFVHISQVERSGLSGLADNMKVDYELTEG-RDGR 59 Query: 65 YSAENLK 71 A LK Sbjct: 60 KMAGELK 66 >gi|108758693|ref|YP_628940.1| cold-shock protein CspC [Myxococcus xanthus DK 1622] gi|4193394|gb|AAD10035.1| CspC [Myxococcus xanthus] gi|108462573|gb|ABF87758.1| cold-shock protein CspC [Myxococcus xanthus DK 1622] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI +G G+DVF+H SA+ G L EGQ V ++ Sbjct: 4 GTVKWFNDAKGFGFIVQDG---GGEDVFVHHSAINMDGFRTLQEGQKVEFE 51 >gi|294101499|ref|YP_003553357.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] gi|293616479|gb|ADE56633.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] Length = 66 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N KGYGFIT E G D F+H SA+ G L EGQ V++D Sbjct: 3 QGTVKWFNGTKGYGFIT----GEDGKDYFVHFSAIQVDGFKTLDEGQKVSFD 50 >gi|297836502|ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp. lyrata] gi|297331973|gb|EFH62392.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp. lyrata] Length = 299 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G + W+ KGYGFITP+ + G+++F+H+S++ S G +LT G+ V Y + ++GK Sbjct: 11 GKVNWFGDGKGYGFITPD---DGGEELFVHQSSIVSDGYRSLTVGESVEYS-ITLGSDGK 66 Query: 65 YSAENL 70 A N+ Sbjct: 67 TKAVNV 72 >gi|223935943|ref|ZP_03627858.1| cold-shock DNA-binding domain protein [bacterium Ellin514] gi|223895544|gb|EEF61990.1| cold-shock DNA-binding domain protein [bacterium Ellin514] Length = 68 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFI + +SG DVF+H +++ +G L EG+ V ++ V +D K Sbjct: 4 GKVKWFDNKKGFGFI----AQDSGQDVFVHHTSILGSGFKTLNEGEEVNFEVVSSDKGPK 59 Query: 65 YSAENLKLV 73 A+N++ V Sbjct: 60 --AQNVQRV 66 >gi|300113220|ref|YP_003759795.1| cold-shock DNA-binding domain-containing protein [Nitrosococcus watsonii C-113] gi|299539157|gb|ADJ27474.1| cold-shock DNA-binding domain protein [Nitrosococcus watsonii C-113] Length = 69 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI EG G D+F+H ++ +G L EGQ V++ VQ Sbjct: 7 GTVKWFNDSKGYGFIQREG----GSDLFVHYRSITGSGHRTLKEGQQVSFIEVQ 56 >gi|258620199|ref|ZP_05715238.1| cold shock transcriptional regulator [Vibrio mimicus VM573] gi|258624440|ref|ZP_05719387.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603] gi|262171708|ref|ZP_06039386.1| cold shock protein CspA [Vibrio mimicus MB-451] gi|258583287|gb|EEW08089.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603] gi|258587557|gb|EEW12267.1| cold shock transcriptional regulator [Vibrio mimicus VM573] gi|261892784|gb|EEY38770.1| cold shock protein CspA [Vibrio mimicus MB-451] Length = 70 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KG+GFITP+ G D+F+H ++ S G L+EGQ V ++ Q + Sbjct: 7 GLVKWFNETKGFGFITPD---NGGADLFVHFKSIVSDGFKTLSEGQKVAFNVEQGN 59 >gi|186473959|ref|YP_001861301.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184196291|gb|ACC74255.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + G+D+F H S + + G +L E Q V+++ V+ GK Sbjct: 4 GTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRTEGFKSLQENQKVSFE-VKMGPKGK 59 Query: 65 YSAENLK 71 +A N+K Sbjct: 60 QAA-NIK 65 >gi|288575007|ref|ZP_06393364.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570748|gb|EFC92305.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 65 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N KGYGFIT TE G+DVF+H SA+ G L E +V ++ Sbjct: 2 KGTVKWFNGTKGYGFIT----TEEGNDVFVHFSAIQMDGYKTLEENDVVEFE 49 >gi|209972088|gb|ACJ03555.1| cold shock protein [Bacillus thuringiensis serovar finitimus] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ Sbjct: 1 MAVTGQVKWFNSEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFE 51 >gi|94984745|ref|YP_604109.1| cold-shock DNA-binding domain-containing protein [Deinococcus geothermalis DSM 11300] gi|94555026|gb|ABF44940.1| cold-shock DNA-binding domain protein [Deinococcus geothermalis DSM 11300] Length = 87 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N +KGYGFI EGS +DVF H SA+ + G L EG V ++ Sbjct: 4 GKVKWFNAEKGYGFIETEGS----EDVFAHFSAIQAQGFKKLNEGDEVEFE 50 >gi|323140506|ref|ZP_08075434.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT 12067] gi|322415074|gb|EFY05865.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT 12067] Length = 68 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 8/74 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G++KW+N KGYGFI +G +VF+H SA+ S G L EGQ V+Y Sbjct: 1 MLSIGTVKWFNNTKGYGFI----EARNGQEVFVHFSAIRSDGYRCLQEGQRVSYHL---- 52 Query: 61 ANGKYSAENLKLVP 74 + GK+ L + P Sbjct: 53 SRGKHGPMALNVSP 66 >gi|163857153|ref|YP_001631451.1| cold shock-like protein [Bordetella petrii DSM 12804] gi|163260881|emb|CAP43183.1| cold shock-like protein [Bordetella petrii] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G +KW+N DKG+GFI PE G D+F H S + S G +L E Q V+Y Q Sbjct: 1 METGIVKWFNADKGFGFIMPE---NGGKDLFAHFSGIESEGYKSLEENQRVSYVQTQ 54 >gi|288918768|ref|ZP_06413114.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] gi|288349853|gb|EFC84084.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] Length = 68 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFIT +G G DVF H S++ G +L EGQ V++ ++ Sbjct: 1 MSEGTVKWFNAEKGFGFITVDG---GGPDVFAHFSSIVGDGYKSLEEGQRVSFT-IEQGQ 56 Query: 62 NGKYSAENLKLV 73 G +A+ L+ Sbjct: 57 KGPQAAQVQPLI 68 >gi|189485194|ref|YP_001956135.1| cold shock RNA chaperon protein [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287153|dbj|BAG13674.1| cold shock RNA chaperon protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KGYGFI+ + + DVF H SA+ S G +L EG V ++ V +D Sbjct: 3 QGKVKWFNDQKGYGFISND---DGSGDVFAHYSAIQSDGFKSLAEGDSVEFEIVNSDKGP 59 Query: 64 KYSAENLKLV 73 K A N+K + Sbjct: 60 K--AANIKKI 67 >gi|16765332|ref|NP_460947.1| cold-shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56413093|ref|YP_150168.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161613431|ref|YP_001587396.1| hypothetical protein SPAB_01147 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197362019|ref|YP_002141656.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205352312|ref|YP_002226113.1| cold shock protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856492|ref|YP_002243143.1| cold shock protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583507|ref|YP_002637305.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912431|ref|ZP_04656268.1| cold shock protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|325530013|sp|E1WGN1|CSPJ_SALTS RecName: Full=Cold shock-like protein CspJ gi|325530014|sp|P0CL01|CSPJ_SALTY RecName: Full=Cold shock-like protein CspJ gi|2961317|emb|CAA72682.1| cspB [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420530|gb|AAL20906.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127350|gb|AAV76856.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161362795|gb|ABX66563.1| hypothetical protein SPAB_01147 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197093496|emb|CAR58956.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205272093|emb|CAR36945.1| cold shock protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708295|emb|CAR32598.1| cold shock protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468034|gb|ACN45864.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247161|emb|CBG24984.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993987|gb|ACY88872.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158509|emb|CBW18019.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912986|dbj|BAJ36960.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085386|emb|CBY95167.1| Cold shock-like protein cspG CPS-G [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224641|gb|EFX49704.1| Cold shock protein CspG [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616988|gb|EFY13896.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618228|gb|EFY15120.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625898|gb|EFY22717.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626350|gb|EFY23160.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632765|gb|EFY29510.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639107|gb|EFY35800.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640379|gb|EFY37036.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647216|gb|EFY43715.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648415|gb|EFY44868.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655544|gb|EFY51852.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660322|gb|EFY56560.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663003|gb|EFY59210.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668188|gb|EFY64347.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674053|gb|EFY70147.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675595|gb|EFY71669.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682994|gb|EFY79010.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686688|gb|EFY82666.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130275|gb|ADX17705.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195075|gb|EFZ80259.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197875|gb|EFZ83000.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204480|gb|EFZ89486.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207570|gb|EFZ92518.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210991|gb|EFZ95851.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217555|gb|EGA02274.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222458|gb|EGA06829.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227477|gb|EGA11639.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231577|gb|EGA15690.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236020|gb|EGA20099.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240590|gb|EGA24633.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245482|gb|EGA29482.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247600|gb|EGA31551.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254428|gb|EGA38244.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257760|gb|EGA41440.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262133|gb|EGA45696.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266256|gb|EGA49746.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270733|gb|EGA54172.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622839|gb|EGE29184.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627359|gb|EGE33702.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988884|gb|AEF07867.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 70 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+NP+KG+GFITP+ + DVF+H SA+ S L E Q V + Q Sbjct: 7 GLVKWFNPEKGFGFITPK---DGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQ 57 >gi|167565863|ref|ZP_02358779.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis EO147] gi|167574414|ref|ZP_02367288.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis C6786] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ + GDD+F H S + G L E Q V+Y+ Sbjct: 4 GTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAENQKVSYE 51 >gi|52843046|ref|YP_096845.1| cold shock transcriptional regulator CspA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630157|gb|AAU28898.1| cold shock transcriptional regulator CspA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 71 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 5/65 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH-RSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKGYGFI+ + DDVF+H RS V++AG L EGQ V + V A G Sbjct: 7 GHVKWFNDDKGYGFISRDNGQ---DDVFVHFRSIVSNAGRKTLLEGQRVEF-LVTKGAKG 62 Query: 64 KYSAE 68 + E Sbjct: 63 LQAEE 67 >gi|108763112|ref|YP_629869.1| cold-shock protein CspA [Myxococcus xanthus DK 1622] gi|4193390|gb|AAD10033.1| CspA [Myxococcus xanthus] gi|108466992|gb|ABF92177.1| cold-shock protein CspA [Myxococcus xanthus DK 1622] Length = 68 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI + + G DVF H +A+ + G L EGQ V ++ + Sbjct: 4 GTVKWFNDAKGFGFIAQD---DGGADVFCHHTAIQTDGFRTLAEGQKVEFETRKGPKG-- 58 Query: 65 YSAENLKLV 73 AEN+++V Sbjct: 59 LQAENVRVV 67 >gi|116620045|ref|YP_822201.1| cold-shock DNA-binding protein family protein [Candidatus Solibacter usitatus Ellin6076] gi|116223207|gb|ABJ81916.1| cold-shock DNA-binding protein family [Candidatus Solibacter usitatus Ellin6076] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 4/54 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 M G++KW+N KG+GFI E+G+DVF+H SA++++G +L EG V++ Sbjct: 1 MRETGTVKWFNAGKGFGFI----QRENGEDVFVHFSAISASGYRSLDEGARVSF 50 >gi|253997134|ref|YP_003049198.1| cold-shock DNA-binding domain-containing protein [Methylotenera mobilis JLW8] gi|253983813|gb|ACT48671.1| cold-shock DNA-binding domain protein [Methylotenera mobilis JLW8] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ GDD+F H SA+ +G +L E + V++D V + GK Sbjct: 4 GLVKWFNDSKGFGFITPDA---GGDDLFAHFSAINDSGYKSLKENERVSFD-VTDGPKGK 59 Query: 65 YSAENLKL 72 ++ K+ Sbjct: 60 QASNIQKI 67 >gi|84497535|ref|ZP_00996357.1| Putative transcriptional regulator cold shock protein [Janibacter sp. HTCC2649] gi|84382423|gb|EAP98305.1| Putative transcriptional regulator cold shock protein [Janibacter sp. HTCC2649] Length = 314 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++ WY P KGYGFITP+G G ++F+H SA+ G+ L+E Q V + Sbjct: 81 GTVSWYEPSKGYGFITPDG---GGTEIFVHSSAIVGGGV--LSEAQRVAF 125 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++ WY+ KG+GFIT S G DVF+H +A GL L EG VTYD V Sbjct: 158 GTVSWYDGGKGFGFIT---SDSGGPDVFVHVRELAD-GLTELGEGDRVTYDVV 206 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQND 60 G+++W++ D+G+GFI + +D+++H S + SA L EGQ+V ++ + D Sbjct: 4 GTVRWFDTDRGFGFI---ALGQDAEDLYVHASEIVSADAMKVLREGQVVEFEVGEGD 57 >gi|15600936|ref|NP_232566.1| cold shock transcriptional regulator CspA [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587988|ref|ZP_01677741.1| cold shock transcriptional regulator CspA [Vibrio cholerae 2740-80] gi|121728193|ref|ZP_01681227.1| cold shock transcriptional regulator CspA [Vibrio cholerae V52] gi|147671768|ref|YP_001215947.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395] gi|153214405|ref|ZP_01949376.1| cold shock transcriptional regulator CspA [Vibrio cholerae 1587] gi|153802385|ref|ZP_01956971.1| cold shock transcriptional regulator CspA [Vibrio cholerae MZO-3] gi|153816822|ref|ZP_01969489.1| cold shock transcriptional regulator CspA [Vibrio cholerae NCTC 8457] gi|153825020|ref|ZP_01977687.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2] gi|153830344|ref|ZP_01983011.1| cold shock transcriptional regulator CspA [Vibrio cholerae 623-39] gi|227811792|ref|YP_002811802.1| cold shock transcriptional regulator CspA [Vibrio cholerae M66-2] gi|229506667|ref|ZP_04396176.1| cold shock protein CspG [Vibrio cholerae BX 330286] gi|229510535|ref|ZP_04400015.1| cold shock protein CspG [Vibrio cholerae B33] gi|229514666|ref|ZP_04404127.1| cold shock protein CspG [Vibrio cholerae TMA 21] gi|229517333|ref|ZP_04406778.1| cold shock protein CspG [Vibrio cholerae RC9] gi|229522836|ref|ZP_04412250.1| cold shock protein CspG [Vibrio cholerae TM 11079-80] gi|229527853|ref|ZP_04417244.1| cold shock protein CspG [Vibrio cholerae 12129(1)] gi|229605144|ref|YP_002875848.1| cold shock protein CspG [Vibrio cholerae MJ-1236] gi|254286659|ref|ZP_04961614.1| cold shock transcriptional regulator CspA [Vibrio cholerae AM-19226] gi|254850434|ref|ZP_05239784.1| cold shock transcriptional regulator CspA [Vibrio cholerae MO10] gi|255746020|ref|ZP_05419967.1| cold shock protein CspG [Vibrio cholera CIRS 101] gi|261212663|ref|ZP_05926947.1| cold shock protein CspG [Vibrio sp. RC341] gi|262162141|ref|ZP_06031156.1| cold shock protein CspG [Vibrio cholerae INDRE 91/1] gi|262164784|ref|ZP_06032522.1| cold shock protein CspG [Vibrio mimicus VM223] gi|262167803|ref|ZP_06035504.1| cold shock protein CspG [Vibrio cholerae RC27] gi|262173002|ref|ZP_06040679.1| cold shock protein CspG [Vibrio mimicus MB-451] gi|262189592|ref|ZP_06047992.1| cold shock protein CspG [Vibrio cholerae CT 5369-93] gi|262403347|ref|ZP_06079907.1| cold shock protein CspG [Vibrio sp. RC586] gi|297579705|ref|ZP_06941632.1| cold shock transcriptional regulator CspA [Vibrio cholerae RC385] gi|298500023|ref|ZP_07009829.1| cold shock transcriptional regulator CspA [Vibrio cholerae MAK 757] gi|20138011|sp|Q9KN00|CSPA_VIBCH RecName: Full=Cold shock-like protein CspA gi|9657556|gb|AAF96079.1| cold shock transcriptional regulator CspA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547786|gb|EAX57875.1| cold shock transcriptional regulator CspA [Vibrio cholerae 2740-80] gi|121629516|gb|EAX61940.1| cold shock transcriptional regulator CspA [Vibrio cholerae V52] gi|124115354|gb|EAY34174.1| cold shock transcriptional regulator CspA [Vibrio cholerae 1587] gi|124122104|gb|EAY40847.1| cold shock transcriptional regulator CspA [Vibrio cholerae MZO-3] gi|126512625|gb|EAZ75219.1| cold shock transcriptional regulator CspA [Vibrio cholerae NCTC 8457] gi|146314151|gb|ABQ18691.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395] gi|148874187|gb|EDL72322.1| cold shock transcriptional regulator CspA [Vibrio cholerae 623-39] gi|149741345|gb|EDM55379.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2] gi|150423243|gb|EDN15189.1| cold shock transcriptional regulator CspA [Vibrio cholerae AM-19226] gi|227010934|gb|ACP07145.1| cold shock transcriptional regulator CspA [Vibrio cholerae M66-2] gi|227014793|gb|ACP11002.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395] gi|229334215|gb|EEN99700.1| cold shock protein CspG [Vibrio cholerae 12129(1)] gi|229340053|gb|EEO05061.1| cold shock protein CspG [Vibrio cholerae TM 11079-80] gi|229345369|gb|EEO10342.1| cold shock protein CspG [Vibrio cholerae RC9] gi|229348646|gb|EEO13604.1| cold shock protein CspG [Vibrio cholerae TMA 21] gi|229352980|gb|EEO17920.1| cold shock protein CspG [Vibrio cholerae B33] gi|229357018|gb|EEO21936.1| cold shock protein CspG [Vibrio cholerae BX 330286] gi|229371630|gb|ACQ62052.1| cold shock protein CspG [Vibrio cholerae MJ-1236] gi|254846139|gb|EET24553.1| cold shock transcriptional regulator CspA [Vibrio cholerae MO10] gi|255735774|gb|EET91172.1| cold shock protein CspG [Vibrio cholera CIRS 101] gi|260837728|gb|EEX64405.1| cold shock protein CspG [Vibrio sp. RC341] gi|261890360|gb|EEY36347.1| cold shock protein CspG [Vibrio mimicus MB-451] gi|262023711|gb|EEY42411.1| cold shock protein CspG [Vibrio cholerae RC27] gi|262027164|gb|EEY45831.1| cold shock protein CspG [Vibrio mimicus VM223] gi|262028216|gb|EEY46874.1| cold shock protein CspG [Vibrio cholerae INDRE 91/1] gi|262034524|gb|EEY52864.1| cold shock protein CspG [Vibrio cholerae CT 5369-93] gi|262350846|gb|EEY99979.1| cold shock protein CspG [Vibrio sp. RC586] gi|297535351|gb|EFH74185.1| cold shock transcriptional regulator CspA [Vibrio cholerae RC385] gi|297542004|gb|EFH78055.1| cold shock transcriptional regulator CspA [Vibrio cholerae MAK 757] gi|327485389|gb|AEA79795.1| Cold shock protein CspG [Vibrio cholerae LMA3894-4] Length = 70 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFI+ + G DVF+H ++ S G L EGQ V++ V+ G Sbjct: 7 GSVKWFNETKGFGFISQD---NGGQDVFVHFKSIVSEGFKTLAEGQRVSFT-VEQGKKGP 62 Query: 65 YSAENLKL 72 +A+ L Sbjct: 63 QAAQVTAL 70 >gi|209517087|ref|ZP_03265934.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295677385|ref|YP_003605909.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|209502480|gb|EEA02489.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295437228|gb|ADG16398.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] Length = 67 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + GDD+F H S + G L E Q V+++ Q Sbjct: 4 GTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAENQKVSFETKQ 54 >gi|269125062|ref|YP_003298432.1| cold-shock DNA-binding domain-containing protein [Thermomonospora curvata DSM 43183] gi|268310020|gb|ACY96394.1| cold-shock DNA-binding domain protein [Thermomonospora curvata DSM 43183] Length = 66 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N +KGYGFI +G G DVF+H SA+ G L +GQ V ++ ++ Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GRDVFVHYSAILMDGYRTLEQGQRVEFEIAHSE 55 >gi|240145038|ref|ZP_04743639.1| cold shock protein B [Roseburia intestinalis L1-82] gi|257202861|gb|EEV01146.1| cold shock protein B [Roseburia intestinalis L1-82] gi|291535362|emb|CBL08474.1| cold-shock DNA-binding protein family [Roseburia intestinalis M50/1] gi|291538173|emb|CBL11284.1| cold-shock DNA-binding protein family [Roseburia intestinalis XB6B4] Length = 67 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N KGYGFI S E G+DVF+H SA+ G L +G+ V ++ + + Sbjct: 1 MQQGTVKWFNAKKGYGFI----SDEQGNDVFVHFSALNMDGFKELKDGERVEFEVTEGE 55 >gi|284007198|emb|CBA72487.1| cold shock-like protein [Arsenophonus nasoniae] Length = 111 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G +KW+N KG+GFITP ++ DVF+H SA+ G L EGQ V + Sbjct: 47 KGQVKWFNESKGFGFITP---SDGSKDVFVHFSAIQGNGFKTLAEGQNVEF 94 >gi|77360127|ref|YP_339702.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|332534950|ref|ZP_08410769.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505] gi|76875038|emb|CAI86259.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|332035623|gb|EGI72114.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505] Length = 67 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M G +K++N KG+GFI E+G DVF+H SA+ +G L+EGQ VT+ Q Sbjct: 1 MSVTGKVKFFNEAKGFGFI----EQENGPDVFVHFSAITGSGFRTLSEGQAVTFSIKQ 54 >gi|293396765|ref|ZP_06641041.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] gi|291421029|gb|EFE94282.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] Length = 69 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + G DVF+H SA+ + G L EGQ V Y +Q+ G Sbjct: 6 GQVKWFNESKGFGFIEQH---DGGKDVFVHFSAIMTDGFKTLAEGQRVEYT-IQDSPRGP 61 Query: 65 YSAENLKL 72 +A + L Sbjct: 62 AAANVVAL 69 >gi|229028904|ref|ZP_04185005.1| Cold shock protein cspB [Bacillus cereus AH1271] gi|229171874|ref|ZP_04299443.1| Cold shock protein cspB [Bacillus cereus MM3] gi|210077339|gb|ACJ06956.1| cold shock protein [Bacillus thuringiensis serovar azorensis] gi|228611584|gb|EEK68837.1| Cold shock protein cspB [Bacillus cereus MM3] gi|228732475|gb|EEL83356.1| Cold shock protein cspB [Bacillus cereus AH1271] Length = 67 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ D Sbjct: 1 MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFEI--ED 54 Query: 61 ANGKYSAENL 70 N A+N+ Sbjct: 55 GNRGPQAKNV 64 >gi|163800347|ref|ZP_02194248.1| cold shock DNA-binding domain protein [Vibrio sp. AND4] gi|159175790|gb|EDP60584.1| cold shock DNA-binding domain protein [Vibrio sp. AND4] Length = 69 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V ++ Q Sbjct: 7 GTVKWFNETKGFGFI----QQENGPDVFAHFSAIQGDGFKTLAEGQKVEFEVTQ 56 >gi|154496406|ref|ZP_02035102.1| hypothetical protein BACCAP_00695 [Bacteroides capillosus ATCC 29799] gi|150274489|gb|EDN01566.1| hypothetical protein BACCAP_00695 [Bacteroides capillosus ATCC 29799] Length = 70 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KG+GFI+ + + DVF+H SA+ G L EGQ V+YD + Sbjct: 1 MYQGTVKWFNETKGFGFIS---NDDGSGDVFVHFSAILVDGFKTLAEGQKVSYDTEPDPK 57 Query: 62 N-GKYSAENLK 71 + GK A N++ Sbjct: 58 DAGKLRAVNVR 68 >gi|77919964|ref|YP_357779.1| cold shock proteins [Pelobacter carbinolicus DSM 2380] gi|77546047|gb|ABA89609.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus DSM 2380] Length = 66 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G +KW+N KG+GFI + G DVF+H S + + G +LT+GQ V +D +++ Sbjct: 3 EGVVKWFNDAKGFGFI----EQQDGPDVFVHFSVIQAEGFKSLTQGQQVEFDIIES 54 >gi|15601687|ref|NP_233318.1| cold shock domain-contain protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586695|ref|ZP_01676479.1| cold shock domain family protein [Vibrio cholerae 2740-80] gi|121726380|ref|ZP_01679654.1| cold shock domain family protein [Vibrio cholerae V52] gi|147671933|ref|YP_001215147.1| cold shock domain-contain protein [Vibrio cholerae O395] gi|153212370|ref|ZP_01948152.1| cold shock domain family protein [Vibrio cholerae 1587] gi|153801420|ref|ZP_01956006.1| cold shock domain family protein [Vibrio cholerae MZO-3] gi|153818328|ref|ZP_01970995.1| cold shock domain family protein [Vibrio cholerae NCTC 8457] gi|153821071|ref|ZP_01973738.1| cold shock domain family protein [Vibrio cholerae B33] gi|153828039|ref|ZP_01980706.1| cold shock domain family protein [Vibrio cholerae 623-39] gi|227812499|ref|YP_002812509.1| cold shock domain family protein [Vibrio cholerae M66-2] gi|229505926|ref|ZP_04395435.1| cold shock protein CspA [Vibrio cholerae BX 330286] gi|229510220|ref|ZP_04399700.1| cold shock protein CspA [Vibrio cholerae B33] gi|229514346|ref|ZP_04403807.1| cold shock protein CspA [Vibrio cholerae TMA 21] gi|229517650|ref|ZP_04407095.1| cold shock protein CspA [Vibrio cholerae RC9] gi|229522460|ref|ZP_04411876.1| cold shock protein CspA [Vibrio cholerae TM 11079-80] gi|229526515|ref|ZP_04415919.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426] gi|229528166|ref|ZP_04417557.1| cold shock protein CspA [Vibrio cholerae 12129(1)] gi|229605458|ref|YP_002876162.1| cold shock protein CspA [Vibrio cholerae MJ-1236] gi|254224759|ref|ZP_04918375.1| cold shock domain family protein [Vibrio cholerae V51] gi|254284560|ref|ZP_04959527.1| cold shock domain family protein [Vibrio cholerae AM-19226] gi|254850097|ref|ZP_05239447.1| cold-shock protein CspV [Vibrio cholerae MO10] gi|255746324|ref|ZP_05420271.1| cold shock protein CspA [Vibrio cholera CIRS 101] gi|262158205|ref|ZP_06029323.1| cold shock protein CspA [Vibrio cholerae INDRE 91/1] gi|262169196|ref|ZP_06036889.1| cold shock protein CspA [Vibrio cholerae RC27] gi|297580016|ref|ZP_06941943.1| cold-shock protein CspV [Vibrio cholerae RC385] gi|298499709|ref|ZP_07009515.1| cold shock domain family protein [Vibrio cholerae MAK 757] gi|20138009|sp|Q9KL16|CSPV_VIBCH RecName: Full=Cold shock protein CspV gi|15425982|gb|AAK97640.1|AF409091_1 cold-shock protein CspV [Vibrio cholerae] gi|9658370|gb|AAF96830.1| cold shock domain family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549123|gb|EAX59158.1| cold shock domain family protein [Vibrio cholerae 2740-80] gi|121631128|gb|EAX63503.1| cold shock domain family protein [Vibrio cholerae V52] gi|124116578|gb|EAY35398.1| cold shock domain family protein [Vibrio cholerae 1587] gi|124123086|gb|EAY41829.1| cold shock domain family protein [Vibrio cholerae MZO-3] gi|125622822|gb|EAZ51140.1| cold shock domain family protein [Vibrio cholerae V51] gi|126511141|gb|EAZ73735.1| cold shock domain family protein [Vibrio cholerae NCTC 8457] gi|126521445|gb|EAZ78668.1| cold shock domain family protein [Vibrio cholerae B33] gi|146314316|gb|ABQ18856.1| cold shock domain family protein [Vibrio cholerae O395] gi|148876448|gb|EDL74583.1| cold shock domain family protein [Vibrio cholerae 623-39] gi|150425345|gb|EDN17121.1| cold shock domain family protein [Vibrio cholerae AM-19226] gi|227011641|gb|ACP07852.1| cold shock domain family protein [Vibrio cholerae M66-2] gi|227015580|gb|ACP11789.1| cold shock domain family protein [Vibrio cholerae O395] gi|229334528|gb|EEO00014.1| cold shock protein CspA [Vibrio cholerae 12129(1)] gi|229336673|gb|EEO01691.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426] gi|229340445|gb|EEO05451.1| cold shock protein CspA [Vibrio cholerae TM 11079-80] gi|229345686|gb|EEO10659.1| cold shock protein CspA [Vibrio cholerae RC9] gi|229348326|gb|EEO13284.1| cold shock protein CspA [Vibrio cholerae TMA 21] gi|229352665|gb|EEO17605.1| cold shock protein CspA [Vibrio cholerae B33] gi|229356277|gb|EEO21195.1| cold shock protein CspA [Vibrio cholerae BX 330286] gi|229371944|gb|ACQ62366.1| cold shock protein CspA [Vibrio cholerae MJ-1236] gi|254845802|gb|EET24216.1| cold-shock protein CspV [Vibrio cholerae MO10] gi|255736078|gb|EET91476.1| cold shock protein CspA [Vibrio cholera CIRS 101] gi|262022477|gb|EEY41185.1| cold shock protein CspA [Vibrio cholerae RC27] gi|262030083|gb|EEY48729.1| cold shock protein CspA [Vibrio cholerae INDRE 91/1] gi|297535662|gb|EFH74496.1| cold-shock protein CspV [Vibrio cholerae RC385] gi|297541690|gb|EFH77741.1| cold shock domain family protein [Vibrio cholerae MAK 757] Length = 70 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 GS+KW+N KG+GF+T + G+DVF+H +++ S G L EGQ V++ Sbjct: 7 GSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLAEGQRVSF 53 >gi|302386621|ref|YP_003822443.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] gi|302197249|gb|ADL04820.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] Length = 65 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +G++KW+N KGYGFI S E G+DVF+H S + G +L EG V +D V Sbjct: 2 KGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLDEGAAVEFDVV 51 >gi|161502877|ref|YP_001569989.1| hypothetical protein SARI_00934 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864224|gb|ABX20847.1| hypothetical protein SARI_00934 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 70 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+NP+KG+GFITP+ ++ DVF+H SA+ S L E Q V + Q Sbjct: 7 GLVKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFRTLNENQEVEFSVEQ 57 >gi|37525576|ref|NP_928920.1| hypothetical protein plu1632 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785004|emb|CAE13925.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 80 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KGYGFI+P+ + G D+F++R A+A+ +LTEGQ V + ++ Sbjct: 17 GRVKWFDERKGYGFISPQ---DGGQDIFVNRKAIANTKNKSLTEGQDVEFSIIR 67 >gi|118579190|ref|YP_900440.1| cold-shock DNA-binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501900|gb|ABK98382.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM 2379] Length = 67 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI + + DVF+H SA+ +G L EG+ VTY+ V+ Sbjct: 4 GTVKWFNESKGFGFIEQD---DGSGDVFVHFSAITGSGFKTLAEGEKVTYNVVK 54 >gi|125560025|gb|EAZ05473.1| hypothetical protein OsI_27689 [Oryza sativa Indica Group] Length = 193 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 38/51 (74%), Gaps = 3/51 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW++ KG+GFITP+ + G+D+F+H+S++ S G +L +G +V + Sbjct: 7 KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEF 54 >gi|77457312|ref|YP_346817.1| cold-shock DNA-binding protein family protein [Pseudomonas fluorescens Pf0-1] gi|77381315|gb|ABA72828.1| major cold shock protein [Pseudomonas fluorescens Pf0-1] Length = 69 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI E G DVF+H A+ G +LTEGQ V Y V+ Sbjct: 7 GNVKWFNDAKGYGFI----QREDGVDVFVHYRAIRGEGHRSLTEGQQVEYAVVE 56 >gi|54294960|ref|YP_127375.1| hypothetical protein lpl2039 [Legionella pneumophila str. Lens] gi|53754792|emb|CAH16279.1| hypothetical protein lpl2039 [Legionella pneumophila str. Lens] Length = 69 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI EG G DVF H ++S+G LTEGQ V + Q Sbjct: 7 GVVKWFNEIKGFGFIEQEG----GPDVFAHFKEISSSGFKTLTEGQRVQFIVTQ 56 >gi|117927601|ref|YP_872152.1| cold-shock DNA-binding protein family protein [Acidothermus cellulolyticus 11B] gi|117648064|gb|ABK52166.1| cold-shock DNA-binding protein family [Acidothermus cellulolyticus 11B] Length = 92 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 V +G++KW+N +KG+GFI +G G DVF+H +A+ G L + Q V ++ VQ Sbjct: 25 VAQGTVKWFNAEKGFGFIAVDG----GQDVFVHYTAIQMEGYKTLDQNQRVEFEIVQ 77 >gi|311693752|gb|ADP96625.1| cold shock, CspA [marine bacterium HP15] Length = 76 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFIT ESG DVF+H SA+ G L EGQ V + Q + Sbjct: 14 GNVKFFNEAKGFGFIT----RESGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKGPQ 69 Query: 65 YSAENL 70 AEN+ Sbjct: 70 --AENV 73 >gi|254254112|ref|ZP_04947429.1| Cold shock protein [Burkholderia dolosa AUO158] gi|124898757|gb|EAY70600.1| Cold shock protein [Burkholderia dolosa AUO158] Length = 83 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 V G++KW+N KG+GFI+P+ GDD+F H S + G L E Q V+Y+ Sbjct: 16 FVDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAENQKVSYE 67 >gi|148263031|ref|YP_001229737.1| cold-shock DNA-binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146396531|gb|ABQ25164.1| cold-shock DNA-binding protein family [Geobacter uraniireducens Rf4] Length = 68 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++ +G +KW+N KG+GF+ E+G+DVF+H SA+ G +L EG VT++ + Sbjct: 2 VMEKGKVKWFNDSKGFGFL----EQENGEDVFVHFSAITGDGFKSLNEGDNVTFEVTK 55 >gi|293606147|ref|ZP_06688512.1| cold-shock domain family protein [Achromobacter piechaudii ATCC 43553] gi|311107159|ref|YP_003980012.1| cold-shock DNA-binding domain-containing protein 3 [Achromobacter xylosoxidans A8] gi|292815602|gb|EFF74718.1| cold-shock domain family protein [Achromobacter piechaudii ATCC 43553] gi|310761848|gb|ADP17297.1| cold-shock DNA-binding domain protein 3 [Achromobacter xylosoxidans A8] Length = 67 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW+N +KGYGFITPE G D+F H S + +G +L E Q V++ Sbjct: 1 METGVVKWFNSEKGYGFITPEA---GGKDLFAHFSEIQGSGFKSLEENQRVSF 50 >gi|271961744|ref|YP_003335940.1| cold-shock DNA-binding domain-containing protein [Streptosporangium roseum DSM 43021] gi|270504919|gb|ACZ83197.1| putative cold-shock DNA-binding domain protein [Streptosporangium roseum DSM 43021] Length = 67 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P+G DVF+H S + G +L +GQ V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIAPDGGA---PDVFVHFSEIQGNGYRSLEDGQRVEFEITQ 54 >gi|261339213|ref|ZP_05967071.1| hypothetical protein ENTCAN_05441 [Enterobacter cancerogenus ATCC 35316] gi|288319062|gb|EFC58000.1| cold shock domain protein CspD [Enterobacter cancerogenus ATCC 35316] Length = 73 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQ 54 >gi|126698954|ref|YP_001087851.1| putative cold shock protein [Clostridium difficile 630] gi|254974900|ref|ZP_05271372.1| putative cold shock protein [Clostridium difficile QCD-66c26] gi|255092289|ref|ZP_05321767.1| putative cold shock protein [Clostridium difficile CIP 107932] gi|255100373|ref|ZP_05329350.1| putative cold shock protein [Clostridium difficile QCD-63q42] gi|255306315|ref|ZP_05350486.1| putative cold shock protein [Clostridium difficile ATCC 43255] gi|255314027|ref|ZP_05355610.1| putative cold shock protein [Clostridium difficile QCD-76w55] gi|255516707|ref|ZP_05384383.1| putative cold shock protein [Clostridium difficile QCD-97b34] gi|255649806|ref|ZP_05396708.1| putative cold shock protein [Clostridium difficile QCD-37x79] gi|255655364|ref|ZP_05400773.1| putative cold shock protein [Clostridium difficile QCD-23m63] gi|260682964|ref|YP_003214249.1| putative cold shock protein [Clostridium difficile CD196] gi|260686562|ref|YP_003217695.1| putative cold shock protein [Clostridium difficile R20291] gi|296451352|ref|ZP_06893090.1| cold shock protein CspA [Clostridium difficile NAP08] gi|296880298|ref|ZP_06904263.1| cold shock protein CspA [Clostridium difficile NAP07] gi|306519907|ref|ZP_07406254.1| putative cold shock protein [Clostridium difficile QCD-32g58] gi|115250391|emb|CAJ68213.1| Cold shock protein CspB [Clostridium difficile] gi|260209127|emb|CBA62316.1| putative cold shock protein [Clostridium difficile CD196] gi|260212578|emb|CBE03568.1| putative cold shock protein [Clostridium difficile R20291] gi|296259768|gb|EFH06625.1| cold shock protein CspA [Clostridium difficile NAP08] gi|296428741|gb|EFH14623.1| cold shock protein CspA [Clostridium difficile NAP07] Length = 66 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI+ EG DVF+H SA+ G L EGQ V ++ V + A G Sbjct: 4 GVVKWFNNEKGFGFISVEGE----GDVFVHFSAITGDGYKTLEEGQSVEFEVV-DGAKGP 58 Query: 65 YSAENLKL 72 +A ++L Sbjct: 59 QAANVVRL 66 >gi|1763348|gb|AAC47478.1| LIN-28 [Caenorhabditis remanei] Length = 239 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + + E D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 55 GSCKWFNVSKGYGFVIDDITRE---DLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110 >gi|51244785|ref|YP_064669.1| cold shock protein [Desulfotalea psychrophila LSv54] gi|50875822|emb|CAG35662.1| probable cold shock protein [Desulfotalea psychrophila LSv54] Length = 66 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI EG GDD+F+H +++ ++G L EG V++D Sbjct: 3 EGIVKWFNDAKGFGFIEQEG----GDDLFVHHTSINASGFKTLEEGARVSFD 50 >gi|51245724|ref|YP_065608.1| cold-shock protein (CspB) [Desulfotalea psychrophila LSv54] gi|50876761|emb|CAG36601.1| probable cold-shock protein (CspB) [Desulfotalea psychrophila LSv54] Length = 66 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 5/64 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI EG GDD+F+H +++ ++G L EG V+++ +++ A G Sbjct: 3 EGIVKWFNDAKGFGFIEQEG----GDDLFVHHTSINASGFKTLEEGARVSFE-IEDGAKG 57 Query: 64 KYSA 67 +A Sbjct: 58 PAAA 61 >gi|307132939|ref|YP_003884955.1| Cold shock protein [Dickeya dadantii 3937] gi|306530468|gb|ADN00399.1| Cold shock protein [Dickeya dadantii 3937] Length = 70 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFITP + DVF+H SA+ S L EGQ V + + N G Sbjct: 7 GSVKWFNETKGFGFITP---ADGSKDVFVHFSAIQSDSFKTLYEGQKVEF-VIGNGPKGP 62 Query: 65 YSAENL 70 SAEN+ Sbjct: 63 -SAENV 67 >gi|330813601|ref|YP_004357840.1| cold shock protein CspA [Candidatus Pelagibacter sp. IMCC9063] gi|327486696|gb|AEA81101.1| cold shock protein CspA [Candidatus Pelagibacter sp. IMCC9063] Length = 68 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N KGYGFI + + DVF+H SAV +G+ L EG ++++D D Sbjct: 1 MSIKGKVKWFNGSKGYGFIERDDKEK---DVFVHMSAVKDSGVDYLDEGDVLSFDI--ED 55 Query: 61 ANGKYSAENLK 71 SA NLK Sbjct: 56 GQKGPSAVNLK 66 >gi|296111917|ref|YP_003622299.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc kimchii IMSNU 11154] gi|295833449|gb|ADG41330.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc kimchii IMSNU 11154] Length = 74 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 5/74 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K + ++GYG+ITP+ E G+DVF+H + + G +L +G+ VTY VQ N Sbjct: 4 GTVKIWQKERGYGYITPD---EGGEDVFVHFNGIDMDGFKSLNQGEKVTYQLVQGYKN-- 58 Query: 65 YSAENLKLVPKSSN 78 Y A ++ V K ++ Sbjct: 59 YQAAQVQPVMKKAS 72 >gi|253581358|ref|ZP_04858584.1| cold-shock protein [Fusobacterium varium ATCC 27725] gi|257470862|ref|ZP_05634952.1| cold-shock DNA-binding protein family protein [Fusobacterium ulcerans ATCC 49185] gi|317065065|ref|ZP_07929550.1| cold shock protein CspB [Fusobacterium ulcerans ATCC 49185] gi|251836722|gb|EES65256.1| cold-shock protein [Fusobacterium varium ATCC 27725] gi|313690741|gb|EFS27576.1| cold shock protein CspB [Fusobacterium ulcerans ATCC 49185] Length = 66 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GF+T +E G D F+H + + G L EGQ VT++ Sbjct: 3 KGTVKWFNKEKGFGFLT----SEDGADYFVHFTGIVGEGFRTLEEGQEVTFE 50 >gi|77166067|ref|YP_344592.1| cold-shock protein, DNA-binding [Nitrosococcus oceani ATCC 19707] gi|76884381|gb|ABA59062.1| cold-shock DNA-binding protein family [Nitrosococcus oceani ATCC 19707] Length = 69 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI EG G D+F+H ++ +G L EGQ V++ VQ Sbjct: 7 GTVKWFNDSKGYGFIQREG----GSDLFVHYRSITGSGHRTLKEGQQVSFIEVQ 56 >gi|108761073|ref|YP_631772.1| cold-shock protein CspD [Myxococcus xanthus DK 1622] gi|4193396|gb|AAD10036.1| CspD [Myxococcus xanthus] gi|108464953|gb|ABF90138.1| cold-shock protein CspD [Myxococcus xanthus DK 1622] Length = 67 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+T +G G+DVF H +A+ G L EGQ V ++ + Sbjct: 4 GTVKWFNDAKGFGFLTQDG---GGEDVFCHHTAINMDGFRTLQEGQKVEFEVTR 54 >gi|302392640|ref|YP_003828460.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] gi|302204717|gb|ADL13395.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] Length = 66 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 6/60 (10%) Query: 2 VHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW++ +KGYGFI PE DDVF+H SA+ G +L EG+ V ++ V+ D Sbjct: 1 METGTVKWFDSNKGYGFIERPEE-----DDVFVHFSAIQEDGFKDLEEGEEVEFNIVEGD 55 >gi|262368483|ref|ZP_06061812.1| cold-shock DNA-binding domain-containing protein [Acinetobacter johnsonii SH046] gi|262316161|gb|EEY97199.1| cold-shock DNA-binding domain-containing protein [Acinetobacter johnsonii SH046] Length = 69 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 + G++KW+N KG+GFI S+++G+DVF H S + S G L EGQ V + V Sbjct: 4 ITTGTVKWFNETKGFGFI----SSDTGEDVFAHFSEIQSNGFKVLNEGQRVQFTIV 55 >gi|240948086|ref|ZP_04752496.1| cold shock-like protein CspC [Actinobacillus minor NM305] gi|257465091|ref|ZP_05629462.1| cold shock-like protein CspC [Actinobacillus minor 202] gi|240297566|gb|EER48058.1| cold shock-like protein CspC [Actinobacillus minor NM305] gi|257450751|gb|EEV24794.1| cold shock-like protein CspC [Actinobacillus minor 202] Length = 70 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI P+ + G+D+F+H SA+ S G + L EG V ++ +D Sbjct: 6 GTVKWFNATKGFGFIAPD---QGGEDIFVHFSAIESNGGYRTLEEGAKVEFEVQASDRGA 62 Query: 64 KYSAENLKLV 73 SA N+K + Sbjct: 63 --SAANVKKI 70 >gi|238765641|ref|ZP_04626525.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638] gi|238696140|gb|EEP88973.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638] Length = 57 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N DKG+GFITP + DVF+H SA+ S L EGQ V + Sbjct: 7 GLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEF 53 >gi|329940599|ref|ZP_08289880.1| cold-shock domain-containing protein [Streptomyces griseoaurantiacus M045] gi|329300660|gb|EGG44557.1| cold-shock domain-containing protein [Streptomyces griseoaurantiacus M045] Length = 62 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MKWFNAEKGFGFIEQDGG---GADVFAHYSNIAAQGFRELLEGQKVNFDIAQ 49 >gi|302384852|ref|YP_003820674.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] gi|302195480|gb|ADL03051.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] Length = 67 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 3/59 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KGYGFI + +G++VF+H S + + G L EGQ VTY+ + + Sbjct: 1 MNNGTVKWFNGAKGYGFIVNDA---TGEEVFVHFSGIVADGYKTLEEGQKVTYETTEGN 56 >gi|226954178|ref|ZP_03824642.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|294650208|ref|ZP_06727582.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC 19194] gi|226835087|gb|EEH67470.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|292823914|gb|EFF82743.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC 19194] Length = 70 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI +SG DVF H S + S G L EGQ VT+ D Sbjct: 7 GTVKWFNETKGFGFI----HADSGQDVFAHFSEIQSTGFKVLHEGQRVTFTI--TDGKKG 60 Query: 65 YSAENLKLVP 74 A + +VP Sbjct: 61 PQATGITVVP 70 >gi|118589651|ref|ZP_01547056.1| Cold-shock DNA-binding domain protein [Stappia aggregata IAM 12614] gi|118437737|gb|EAV44373.1| Cold-shock DNA-binding domain protein [Stappia aggregata IAM 12614] Length = 66 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 7/73 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+H G++KW++ +G G I P+ G+D+ + SA+ +G+ LTEGQLV +D Sbjct: 1 MLH-GNVKWFDNRRGIGTIEPQ----DGEDILVDISALRRSGIDTLTEGQLVAFDLEWR- 54 Query: 61 ANGKYSAENLKLV 73 G+ AE+LK++ Sbjct: 55 -RGQMVAEDLKVL 66 >gi|319405275|emb|CBI78889.1| putative cold shock protein y4cH [Bartonella sp. AR 15-3] Length = 71 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 6/65 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G +K++N +KG+GFI P+ GST D+F+H S V ++GL L + Q V++D ++ Sbjct: 1 MAQTGEVKFFNNNKGFGFIKPDNGST----DIFVHISDVQASGLTGLNDAQKVSFD-IEP 55 Query: 60 DANGK 64 D GK Sbjct: 56 DRRGK 60 >gi|295096413|emb|CBK85503.1| cold-shock DNA-binding protein family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 73 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQ 54 >gi|270158306|ref|ZP_06186963.1| cold shock-like protein CspG [Legionella longbeachae D-4968] gi|289163444|ref|YP_003453582.1| DNA-binding transcriptional repressor [Legionella longbeachae NSW150] gi|269990331|gb|EEZ96585.1| cold shock-like protein CspG [Legionella longbeachae D-4968] gi|288856617|emb|CBJ10424.1| DNA-binding transcriptional repressor [Legionella longbeachae NSW150] Length = 69 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI ESG DVF H + S+G LTEGQ V + Q Sbjct: 7 GIVKWFNEAKGFGFI----EQESGPDVFAHFKEIVSSGFKTLTEGQRVQFVVTQ 56 >gi|237732132|ref|ZP_04562613.1| stationary phase/starvation inducible regulatory protein CspD [Citrobacter sp. 30_2] gi|283832491|ref|ZP_06352232.1| cold shock domain protein CspD [Citrobacter youngae ATCC 29220] gi|226907671|gb|EEH93589.1| stationary phase/starvation inducible regulatory protein CspD [Citrobacter sp. 30_2] gi|291072151|gb|EFE10260.1| cold shock domain protein CspD [Citrobacter youngae ATCC 29220] Length = 74 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQ 54 >gi|134282646|ref|ZP_01769350.1| cold-shock domain family protein [Burkholderia pseudomallei 305] gi|254204405|ref|ZP_04910758.1| cold-shock domain family protein [Burkholderia mallei JHU] gi|134246203|gb|EBA46293.1| cold-shock domain family protein [Burkholderia pseudomallei 305] gi|147753991|gb|EDK61055.1| cold-shock domain family protein [Burkholderia mallei JHU] Length = 83 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N KG+GFITP+ GDD+F H S + S G L E Q V+++ Sbjct: 16 LMDTGTVKWFNETKGFGFITPD---SGGDDLFAHFSEIRSEGYKTLAENQKVSFE 67 >gi|126664472|ref|ZP_01735456.1| cold-shock DNA-binding domain family protein [Marinobacter sp. ELB17] gi|126630798|gb|EBA01412.1| cold-shock DNA-binding domain family protein [Marinobacter sp. ELB17] Length = 68 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFIT EG G DVF+H S++ G L EGQ V + Q + Sbjct: 6 GTVKFFNEAKGFGFITREG----GPDVFVHYSSIQGGGFKTLAEGQQVEFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 62 --AENVVAV 68 >gi|262377174|ref|ZP_06070399.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] gi|262307912|gb|EEY89050.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] Length = 69 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KG+GFI ESG DVF H ++S+G L EGQ V++ V Sbjct: 7 GTVKWFNETKGFGFI----QQESGPDVFAHFKEISSSGFKTLFEGQRVSFSVV 55 >gi|104781331|ref|YP_607829.1| cold-shock protein CspD [Pseudomonas entomophila L48] gi|95110318|emb|CAK15025.1| cold-shock protein CspD [Pseudomonas entomophila L48] Length = 87 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI EG E D+F H SA+ G L GQ VT++ +Q Sbjct: 4 GKVKWFNNAKGYGFINEEGKDE---DLFAHYSAIQMDGYKTLKAGQAVTFELLQ 54 >gi|16759816|ref|NP_455433.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764305|ref|NP_459920.1| stress response protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142411|ref|NP_805753.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414004|ref|YP_151079.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179468|ref|YP_215885.1| CspA-like protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157146440|ref|YP_001453759.1| hypothetical protein CKO_02200 [Citrobacter koseri ATCC BAA-895] gi|161503927|ref|YP_001571039.1| hypothetical protein SARI_02018 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161614826|ref|YP_001588791.1| hypothetical protein SPAB_02579 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550382|ref|ZP_02344139.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168230817|ref|ZP_02655875.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236854|ref|ZP_02661912.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240791|ref|ZP_02665723.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263571|ref|ZP_02685544.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466527|ref|ZP_02700389.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819926|ref|ZP_02831926.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446783|ref|YP_002040144.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451466|ref|YP_002044937.1| cold shock domain-containing protein CspD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470525|ref|ZP_03076509.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734305|ref|YP_002114000.1| cold shock domain-containing protein CspD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248616|ref|YP_002145861.1| cold shock domain-containing protein CspD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264137|ref|ZP_03164211.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362927|ref|YP_002142564.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245012|ref|YP_002214871.1| cold shock domain-containing protein CspD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200391092|ref|ZP_03217703.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930059|ref|ZP_03221080.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352154|ref|YP_002225955.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856338|ref|YP_002242989.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213053362|ref|ZP_03346240.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419933|ref|ZP_03352999.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428023|ref|ZP_03360773.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581371|ref|ZP_03363197.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213620716|ref|ZP_03373499.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649853|ref|ZP_03379906.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865355|ref|ZP_03387474.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582755|ref|YP_002636553.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913423|ref|ZP_04657260.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289805674|ref|ZP_06536303.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289825001|ref|ZP_06544364.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25296125|pir||AG0609 cold shock-like protein CspD [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419455|gb|AAL19879.1| CspA-like protein but not cold shock induced [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502109|emb|CAD05345.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi] gi|29138041|gb|AAO69602.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128261|gb|AAV77767.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127101|gb|AAX64804.1| CspA-like protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157083645|gb|ABV13323.1| hypothetical protein CKO_02200 [Citrobacter koseri ATCC BAA-895] gi|160865274|gb|ABX21897.1| hypothetical protein SARI_02018 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161364190|gb|ABX67958.1| hypothetical protein SPAB_02579 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405446|gb|ACF65668.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409770|gb|ACF69989.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456889|gb|EDX45728.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709807|gb|ACF89028.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630992|gb|EDX49578.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094404|emb|CAR59920.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212319|gb|ACH49716.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242392|gb|EDY25012.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290126|gb|EDY29483.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939528|gb|ACH76861.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603537|gb|EDZ02083.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321053|gb|EDZ06254.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271935|emb|CAR36779.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324550|gb|EDZ12389.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334822|gb|EDZ21586.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339865|gb|EDZ26629.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343272|gb|EDZ30036.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347672|gb|EDZ34303.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708141|emb|CAR32434.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467282|gb|ACN45112.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246160|emb|CBG23964.1| cold shock-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992672|gb|ACY87557.1| stress response protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157488|emb|CBW16978.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911933|dbj|BAJ35907.1| cold shock protein CspD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085180|emb|CBY94967.1| Cold shock-like protein cspD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223268|gb|EFX48337.1| Cold shock protein CspD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616380|gb|EFY13289.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619630|gb|EFY16505.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622674|gb|EFY19519.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628587|gb|EFY25374.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631523|gb|EFY28279.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637050|gb|EFY33753.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641752|gb|EFY38388.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644456|gb|EFY40996.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649574|gb|EFY46005.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654124|gb|EFY50447.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658039|gb|EFY54306.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663513|gb|EFY59715.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670249|gb|EFY66389.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671485|gb|EFY67607.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676841|gb|EFY72908.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682766|gb|EFY78785.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686445|gb|EFY82427.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713938|gb|EFZ05509.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129210|gb|ADX16640.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323196101|gb|EFZ81264.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196753|gb|EFZ81897.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202967|gb|EFZ88001.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209008|gb|EFZ93945.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211913|gb|EFZ96741.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215155|gb|EFZ99900.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222358|gb|EGA06736.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226879|gb|EGA11062.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229833|gb|EGA13956.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233058|gb|EGA17154.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240793|gb|EGA24835.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243110|gb|EGA27130.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247431|gb|EGA31387.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251653|gb|EGA35520.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257359|gb|EGA41057.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261948|gb|EGA45514.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267963|gb|EGA51442.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271970|gb|EGA55385.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622624|gb|EGE28969.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627198|gb|EGE33541.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987837|gb|AEF06820.1| stress response protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 73 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQ 54 >gi|253699301|ref|YP_003020490.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] gi|251774151|gb|ACT16732.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] Length = 66 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI ++G DVF+H S++ G +L EG VT+D VQ A G Sbjct: 4 GVVKWFNDAKGFGFI----EQDNGVDVFVHFSSIQGDGFKSLVEGDAVTFDVVQG-AKGP 58 Query: 65 YSAENLK 71 +A +K Sbjct: 59 QAANVVK 65 >gi|94500606|ref|ZP_01307136.1| Cold shock protein [Oceanobacter sp. RED65] gi|94427161|gb|EAT12141.1| Cold shock protein [Oceanobacter sp. RED65] Length = 171 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 RG +KW+N KG+GFIT ++G+DVF+H ++ G +L+EGQ V + V D Sbjct: 106 ERGLVKWFNVKKGFGFIT----RDNGEDVFVHFRSIRGTGHRSLSEGQNVKFSVV--DGQ 159 Query: 63 GKYSAENLKLV 73 AE++ +V Sbjct: 160 KGLQAEDVSVV 170 >gi|73667319|ref|YP_303335.1| cold-shock DNA-binding protein family protein [Ehrlichia canis str. Jake] gi|72394460|gb|AAZ68737.1| cold-shock DNA-binding protein family [Ehrlichia canis str. Jake] Length = 87 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 8/78 (10%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGD------DVFLHRSAVASAGLFNLTEGQLVTYDY 56 + G +KW++ +KGYGFI + + + D+F+H +A+ + + L EGQ V Y Sbjct: 11 YTGYVKWFSSEKGYGFICKDQGDKVKNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQL 70 Query: 57 VQNDANGKYSAENLKLVP 74 +N NGK+SA NL+++ Sbjct: 71 DKN--NGKFSAVNLEVLE 86 >gi|325295337|ref|YP_004281851.1| cold-shock DNA-binding domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065785|gb|ADY73792.1| cold-shock DNA-binding domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 68 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW++ KGYGFIT + +G DVF+H + +A G L EG+ V+++ +++ Sbjct: 6 GTVKWFDSKKGYGFITAD----NGQDVFVHYTGIAGTGFRTLEEGERVSFNITESN 57 >gi|320539592|ref|ZP_08039257.1| cold shock protein [Serratia symbiotica str. Tucson] gi|320030351|gb|EFW12365.1| cold shock protein [Serratia symbiotica str. Tucson] Length = 73 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N KG+GFI PE G+DVF H S + G L GQ V++D Q Sbjct: 1 MEMGTVKWFNNAKGFGFICPE---SGGEDVFAHYSTIKMDGYRTLKAGQQVSFDVYQ 54 >gi|213024594|ref|ZP_03339041.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 71 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQ 54 >gi|197301371|ref|ZP_03166452.1| hypothetical protein RUMLAC_00098 [Ruminococcus lactaris ATCC 29176] gi|197299528|gb|EDY34047.1| hypothetical protein RUMLAC_00098 [Ruminococcus lactaris ATCC 29176] Length = 65 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI S G+D+F+H S + G +L EGQ V +D V A G Sbjct: 3 GTVKWFNNQKGYGFI----SDSEGNDIFVHYSGLVMDGFKSLEEGQAVEFD-VTEGAKGP 57 Query: 65 YSAENLKL 72 + +KL Sbjct: 58 QATNVVKL 65 >gi|172041529|ref|YP_001801243.1| putative cold shock protein [Corynebacterium urealyticum DSM 7109] gi|171852833|emb|CAQ05809.1| putative cold shock protein [Corynebacterium urealyticum DSM 7109] Length = 67 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KGYGFI PE + D+F+H S + S+G L E Q V ++ Sbjct: 3 QGTVKWFNAEKGYGFIAPE---DGSADLFVHYSEIQSSGFRTLEEDQKVEFE 51 >gi|296103113|ref|YP_003613259.1| DNA replication inhibitor [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057572|gb|ADF62310.1| DNA replication inhibitor [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 73 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQ 54 >gi|237808041|ref|YP_002892481.1| cold-shock DNA-binding domain-containing protein [Tolumonas auensis DSM 9187] gi|237500302|gb|ACQ92895.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM 9187] Length = 68 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KW+N KG+GFI + G DVF+H A+ S G L EGQ V + Q Sbjct: 3 VRTGKVKWFNEAKGFGFI----QQDEGPDVFVHFRAINSTGFKTLAEGQRVQFTVTQGQK 58 Query: 62 NGKYSAENLKLV 73 + AEN+ ++ Sbjct: 59 GPQ--AENVTVL 68 >gi|253700127|ref|YP_003021316.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] gi|251774977|gb|ACT17558.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] Length = 68 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI ++G+DVF+H SA+ G +L EG+ V++D V N G Sbjct: 3 QGKVKWFNDAKGFGFI----EQDNGEDVFVHFSAITGDGFKSLAEGESVSFD-VTNGPKG 57 Query: 64 KYSAENLKLV 73 A N+K + Sbjct: 58 -LQAANVKKI 66 >gi|73539162|ref|YP_299529.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72122499|gb|AAZ64685.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 83 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N KG+GFI P+ GDD+F H S + S G +L E Q V+++ V+N Sbjct: 16 IMQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEIRSEGFKSLQENQRVSFE-VKNG 71 Query: 61 ANGKYSA 67 G +A Sbjct: 72 PKGLQAA 78 >gi|283784647|ref|YP_003364512.1| cold shock-like protein CspD [Citrobacter rodentium ICC168] gi|282948101|emb|CBG87666.1| cold shock-like protein CspD [Citrobacter rodentium ICC168] Length = 73 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQPVQFDVHQ 54 >gi|237804204|ref|ZP_04591789.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026185|gb|EGI06241.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 41 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 4/45 (8%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 W+N +KG+GFITP+ SGDD+F+H A+ S G +L EGQ V+ Sbjct: 1 WFNDEKGFGFITPQ----SGDDLFVHFKAIQSDGFKSLKEGQQVS 41 >gi|193214431|ref|YP_001995630.1| cold-shock DNA-binding domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193087908|gb|ACF13183.1| cold-shock DNA-binding domain protein [Chloroherpeton thalassium ATCC 35110] Length = 73 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 8/77 (10%) Query: 1 MVHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQ 58 M HR ++KW++ KGYGFI PEG G+D+F+H SA++S + L +G V ++ V Sbjct: 1 MAHRSNVKWFDGKKGYGFIVNPEG----GEDIFVHYSAISSEKKYKMLDQGVEVEFELVT 56 Query: 59 NDANGKYSAENLKLVPK 75 D A+N++ + + Sbjct: 57 TDKG--LQAQNVREISE 71 >gi|311280210|ref|YP_003942441.1| cold-shock DNA-binding domain-containing protein [Enterobacter cloacae SCF1] gi|308749405|gb|ADO49157.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1] Length = 73 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQPVRFDVHQ 54 >gi|53717183|ref|YP_105587.1| cold-shock domain-contain protein [Burkholderia mallei ATCC 23344] gi|53722389|ref|YP_111374.1| cold shock-like protein [Burkholderia pseudomallei K96243] gi|67640593|ref|ZP_00439394.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8 horse 4] gi|76818479|ref|YP_335547.1| cold shock transcriptional regulator protein [Burkholderia pseudomallei 1710b] gi|121596928|ref|YP_990092.1| cold-shock domain-contain protein [Burkholderia mallei SAVP1] gi|124383143|ref|YP_001023992.1| cold-shock domain-contain protein [Burkholderia mallei NCTC 10229] gi|126444073|ref|YP_001062939.1| hypothetical protein BURPS668_A1944 [Burkholderia pseudomallei 668] gi|126447704|ref|YP_001078627.1| cold-shock domain-contain protein [Burkholderia mallei NCTC 10247] gi|126455982|ref|YP_001075887.1| cold-shock domain-contain protein [Burkholderia pseudomallei 1106a] gi|166999526|ref|ZP_02265363.1| cold-shock DNA-binding domain protein [Burkholderia mallei PRL-20] gi|167723959|ref|ZP_02407195.1| cold-shock domain family protein [Burkholderia pseudomallei DM98] gi|167742930|ref|ZP_02415704.1| cold-shock domain family protein [Burkholderia pseudomallei 14] gi|167820105|ref|ZP_02451785.1| cold-shock domain family protein [Burkholderia pseudomallei 91] gi|167828481|ref|ZP_02459952.1| cold-shock domain family protein [Burkholderia pseudomallei 9] gi|167849936|ref|ZP_02475444.1| cold-shock domain family protein [Burkholderia pseudomallei B7210] gi|167898541|ref|ZP_02485942.1| cold-shock domain family protein [Burkholderia pseudomallei 7894] gi|167906890|ref|ZP_02494095.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC 13177] gi|167915247|ref|ZP_02502338.1| cold-shock domain family protein [Burkholderia pseudomallei 112] gi|167923078|ref|ZP_02510169.1| cold-shock domain family protein [Burkholderia pseudomallei BCC215] gi|217425337|ref|ZP_03456831.1| cold-shock domain family protein [Burkholderia pseudomallei 576] gi|226199127|ref|ZP_03794689.1| cold-shock domain family protein [Burkholderia pseudomallei Pakistan 9] gi|237510263|ref|ZP_04522978.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|242312121|ref|ZP_04811138.1| cold-shock domain family protein [Burkholderia pseudomallei 1106b] gi|254176187|ref|ZP_04882845.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399] gi|254183753|ref|ZP_04890345.1| cold-shock domain family protein [Burkholderia pseudomallei 1655] gi|254186667|ref|ZP_04893183.1| cold-shock domain family protein [Burkholderia pseudomallei Pasteur 52237] gi|254194434|ref|ZP_04900866.1| cold-shock domain family protein [Burkholderia pseudomallei S13] gi|254200381|ref|ZP_04906746.1| cold-shock domain family protein [Burkholderia mallei FMH] gi|254263480|ref|ZP_04954345.1| cold-shock domain family protein [Burkholderia pseudomallei 1710a] gi|254301649|ref|ZP_04969093.1| cold-shock domain family protein [Burkholderia pseudomallei 406e] gi|254356632|ref|ZP_04972907.1| cold-shock domain family protein [Burkholderia mallei 2002721280] gi|52212803|emb|CAH38835.1| putative cold shock-like protein [Burkholderia pseudomallei K96243] gi|52423153|gb|AAU46723.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344] gi|76582952|gb|ABA52426.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|121224726|gb|ABM48257.1| cold-shock domain family protein [Burkholderia mallei SAVP1] gi|124291163|gb|ABN00433.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC 10229] gi|126223564|gb|ABN87069.1| conserved domain protein [Burkholderia pseudomallei 668] gi|126229750|gb|ABN93163.1| cold-shock domain family protein [Burkholderia pseudomallei 1106a] gi|126240558|gb|ABO03670.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC 10247] gi|147747993|gb|EDK55068.1| cold-shock domain family protein [Burkholderia mallei FMH] gi|148025659|gb|EDK83782.1| cold-shock domain family protein [Burkholderia mallei 2002721280] gi|157810787|gb|EDO87957.1| cold-shock domain family protein [Burkholderia pseudomallei 406e] gi|157934351|gb|EDO90021.1| cold-shock domain family protein [Burkholderia pseudomallei Pasteur 52237] gi|160697229|gb|EDP87199.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399] gi|169651185|gb|EDS83878.1| cold-shock domain family protein [Burkholderia pseudomallei S13] gi|184214286|gb|EDU11329.1| cold-shock domain family protein [Burkholderia pseudomallei 1655] gi|217391588|gb|EEC31616.1| cold-shock domain family protein [Burkholderia pseudomallei 576] gi|225928902|gb|EEH24927.1| cold-shock domain family protein [Burkholderia pseudomallei Pakistan 9] gi|235002468|gb|EEP51892.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|238521343|gb|EEP84795.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8 horse 4] gi|242135360|gb|EES21763.1| cold-shock domain family protein [Burkholderia pseudomallei 1106b] gi|243064365|gb|EES46551.1| cold-shock DNA-binding domain protein [Burkholderia mallei PRL-20] gi|254214482|gb|EET03867.1| cold-shock domain family protein [Burkholderia pseudomallei 1710a] Length = 67 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ GDD+F H S + S G L E Q V+++ Sbjct: 4 GTVKWFNETKGFGFITPD---SGGDDLFAHFSEIRSEGYKTLAENQKVSFE 51 >gi|307610951|emb|CBX00570.1| hypothetical protein LPW_22881 [Legionella pneumophila 130b] Length = 69 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI EG G DVF H ++S+G LTEGQ V + Q Sbjct: 7 GVVKWFNELKGFGFIEQEG----GPDVFAHFKEISSSGFKTLTEGQRVQFIVTQ 56 >gi|239617864|ref|YP_002941186.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF 19.5.1] gi|239506695|gb|ACR80182.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF 19.5.1] Length = 67 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KGYGFIT + G D+F+H SA+ G L EGQ V ++ ++ G Sbjct: 2 KGTVKWFSGKKGYGFIT----MDDGGDIFVHFSAIEMDGYKTLNEGQRVEFE-IEEGPKG 56 Query: 64 KYSAENLKLV 73 + A ++++ Sbjct: 57 RPQAAKVRVI 66 >gi|228908166|ref|ZP_04072014.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|229017742|ref|ZP_04174631.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|229023958|ref|ZP_04180438.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|229096909|ref|ZP_04227878.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|229103017|ref|ZP_04233706.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|229115898|ref|ZP_04245295.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|229161370|ref|ZP_04289355.1| Cold shock protein cspB [Bacillus cereus R309803] gi|229173122|ref|ZP_04300673.1| Cold shock protein cspB [Bacillus cereus MM3] gi|228610455|gb|EEK67726.1| Cold shock protein cspB [Bacillus cereus MM3] gi|228622184|gb|EEK79025.1| Cold shock protein cspB [Bacillus cereus R309803] gi|228667560|gb|EEL23005.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|228680432|gb|EEL34620.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|228686519|gb|EEL40428.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|228737336|gb|EEL87851.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|228743558|gb|EEL93669.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|228851584|gb|EEM96390.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] Length = 67 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G+DVF+H SA+ G +L EGQ V+++ D Sbjct: 1 MTLTGKVKWFNSEKGFGFI----EVADGNDVFVHFSAITGDGFKSLDEGQEVSFEV--ED 54 Query: 61 ANGKYSAENL 70 N A+N+ Sbjct: 55 GNRGPQAKNV 64 >gi|91783230|ref|YP_558436.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|91687184|gb|ABE30384.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] Length = 67 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITP+ GDD+F H S + G L E Q V+Y+ Sbjct: 4 GTVKWFNDSKGFGFITPDA---GGDDLFAHFSEIRGDGFKTLAENQKVSYE 51 >gi|319403835|emb|CBI77421.1| putative cold shock protein y4cH [Bartonella rochalimae ATCC BAA-1498] gi|319406844|emb|CBI80479.1| putative cold shock protein y4cH [Bartonella sp. 1-1C] Length = 71 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 6/65 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G +K++N +KG+GFI P+ GST D+F+H S V ++GL L + Q V++D ++ Sbjct: 1 MAQTGEVKFFNNNKGFGFIKPDNGST----DIFVHISDVQASGLSGLNDAQKVSFD-IEP 55 Query: 60 DANGK 64 D GK Sbjct: 56 DRRGK 60 >gi|262165515|ref|ZP_06033252.1| cold shock protein CspA [Vibrio mimicus VM223] gi|262402390|ref|ZP_06078951.1| cold shock protein CspA [Vibrio sp. RC586] gi|262025231|gb|EEY43899.1| cold shock protein CspA [Vibrio mimicus VM223] gi|262351172|gb|EEZ00305.1| cold shock protein CspA [Vibrio sp. RC586] Length = 70 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KG+GFITP+ G D+F+H ++ S G L EGQ V ++ Q + Sbjct: 7 GLVKWFNETKGFGFITPD---NGGADLFVHFKSIVSDGFKTLAEGQKVAFNVEQGN 59 >gi|120402055|ref|YP_951884.1| cold-shock DNA-binding domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119954873|gb|ABM11878.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii PYR-1] Length = 67 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N DKG+GFI P+G DVF+H S ++ G +L E Q V ++ Q + Sbjct: 3 QGTVKWFNGDKGFGFIAPDGGA---PDVFVHYSEISGNGYRSLEENQRVEFEVEQGN 56 >gi|115474635|ref|NP_001060914.1| Os08g0129200 [Oryza sativa Japonica Group] gi|29467522|dbj|BAC66711.1| putative cold shock protein-1 [Oryza sativa Japonica Group] gi|113622883|dbj|BAF22828.1| Os08g0129200 [Oryza sativa Japonica Group] gi|187609563|gb|ACD13289.1| cold shock domain protein 2 [Oryza sativa Japonica Group] gi|215715378|dbj|BAG95129.1| unnamed protein product [Oryza sativa Japonica Group] Length = 197 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 38/51 (74%), Gaps = 3/51 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW++ KG+GFITP+ + G+D+F+H+S++ S G +L +G +V + Sbjct: 7 KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEF 54 >gi|33592837|ref|NP_880481.1| cold shock-like protein [Bordetella pertussis Tohama I] gi|61221519|sp|P0A352|CSPA_BORPE RecName: Full=Cold shock-like protein CspA gi|61221520|sp|P0A353|CSPA_BORBR RecName: Full=Cold shock-like protein CspA gi|61221521|sp|P0A354|CSPA_BORPA RecName: Full=Cold shock-like protein CspA gi|4468119|emb|CAB38009.1| CspA protein; cold shock protein A [Bordetella pertussis Tohama I] gi|33572485|emb|CAE42057.1| cold shock-like protein [Bordetella pertussis Tohama I] gi|332382250|gb|AEE67097.1| cold shock-like protein [Bordetella pertussis CS] Length = 67 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW+N +KGYGFITPE G D+F H S + + G +L E Q V++ Sbjct: 1 METGVVKWFNAEKGYGFITPEA---GGKDLFAHFSEIQANGFKSLEENQRVSF 50 >gi|121997901|ref|YP_001002688.1| cold-shock DNA-binding domain-containing protein [Halorhodospira halophila SL1] gi|121589306|gb|ABM61886.1| cold-shock DNA-binding protein family [Halorhodospira halophila SL1] Length = 69 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 4/52 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW++ KGYGFI+ EG G+DVF+H A+ G +L EGQ V + Sbjct: 5 QQGTVKWFDNAKGYGFISREG----GEDVFVHFRAIRGDGFRSLDEGQAVEF 52 >gi|258624846|ref|ZP_05719774.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603] gi|258582844|gb|EEW07665.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603] Length = 66 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFI+ + G DVF+H ++ S G L EGQ V++ V+ G Sbjct: 3 GSVKWFNETKGFGFISQD---NGGQDVFVHFKSIVSEGFKTLAEGQRVSFT-VEQGKKGP 58 Query: 65 YSAENLKL 72 +A+ L Sbjct: 59 QAAQVTAL 66 >gi|59712374|ref|YP_205150.1| DNA replication inhibitor [Vibrio fischeri ES114] gi|197334669|ref|YP_002156589.1| cold shock domain protein CspD [Vibrio fischeri MJ11] gi|59480475|gb|AAW86262.1| DNA replication inhibitor [Vibrio fischeri ES114] gi|197316159|gb|ACH65606.1| cold shock domain protein CspD [Vibrio fischeri MJ11] Length = 73 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PEG E G D+F H S + G L GQ VTY+ + G Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIEMEGYRTLKAGQAVTYE-IHEGPKG- 58 Query: 65 YSAENLKLV 73 + A +KL+ Sbjct: 59 FHASEIKLL 67 >gi|16760938|ref|NP_456555.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141370|ref|NP_804712.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053459|ref|ZP_03346337.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213421410|ref|ZP_03354476.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424976|ref|ZP_03357726.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580718|ref|ZP_03362544.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213864720|ref|ZP_03386839.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289811876|ref|ZP_06542505.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289829487|ref|ZP_06547099.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|20137745|sp|P58726|CSPJ_SALTI RecName: Full=Cold shock-like protein CspJ gi|25296117|pir||AD0755 cold shock protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503235|emb|CAD05743.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136997|gb|AAO68561.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 70 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+NP+KG+GFITP+ + DVF+H SA+ S L E Q V + Q Sbjct: 7 GLVKWFNPEKGFGFITPK---DGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQ 57 >gi|289705593|ref|ZP_06501984.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58] gi|289557674|gb|EFD50974.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58] Length = 67 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI PE ++ DVF+H SA+ +G L E V ++ Q+ G Sbjct: 4 GTVKWFNAEKGYGFIAPE---DNSADVFVHFSAIQGSGFKELQENDRVEFE-TQDGPKGL 59 Query: 65 YSAENLKL 72 +A KL Sbjct: 60 QAANVTKL 67 >gi|257056878|ref|YP_003134710.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] gi|256586750|gb|ACU97883.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] Length = 67 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G++KW+N +KG+GFI P+G G DVF+H S + G +L +GQ V + Q Sbjct: 4 GTVKWFNSEKGFGFIAPDG---GGADVFVHYSEIDGRGFRSLEDGQRVVFTVGQG 55 >gi|288574158|ref|ZP_06392515.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569899|gb|EFC91456.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 66 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 15/75 (20%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFIT E G D F+H SA+ G L EGQ VT Sbjct: 3 QGTVKWFNGTKGYGFITG----EDGKDYFVHFSAINIDGFKTLDEGQAVT---------- 48 Query: 64 KYSAENLKLVPKSSN 78 ++ EN + P++SN Sbjct: 49 -FTIENGQKGPQASN 62 >gi|145294296|ref|YP_001137117.1| hypothetical protein cgR_0252 [Corynebacterium glutamicum R] gi|140844216|dbj|BAF53215.1| hypothetical protein [Corynebacterium glutamicum R] Length = 67 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI P + D+F+H S + +G NL E QLV ++ Sbjct: 3 QGTVKWFNGEKGFGFIAP---NDGSADLFVHYSEIQGSGFRNLEENQLVEFE 51 >gi|153821098|ref|ZP_01973765.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae B33] gi|153824664|ref|ZP_01977331.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2] gi|262190586|ref|ZP_06048826.1| cold shock protein CspA [Vibrio cholerae CT 5369-93] gi|126521472|gb|EAZ78695.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae B33] gi|149741620|gb|EDM55649.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2] gi|262033546|gb|EEY52044.1| cold shock protein CspA [Vibrio cholerae CT 5369-93] gi|327485910|gb|AEA80316.1| Cold shock protein CspA [Vibrio cholerae LMA3894-4] Length = 66 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 GS+KW+N KG+GF+T + G+DVF+H +++ S G L EGQ V++ Sbjct: 3 GSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLAEGQRVSF 49 >gi|261211013|ref|ZP_05925303.1| cold shock protein CspA [Vibrio sp. RC341] gi|260839988|gb|EEX66588.1| cold shock protein CspA [Vibrio sp. RC341] Length = 70 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KG+GFITP+ G D+F+H ++ S G L EGQ V ++ Q + Sbjct: 7 GLVKWFNETKGFGFITPD---NGGADLFVHFKSIVSDGFKTLAEGQKVAFNVEQGN 59 >gi|238756793|ref|ZP_04618027.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473] gi|238704988|gb|EEP97471.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473] Length = 75 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFITP T+ DVF+H SA+ S L EGQ V + ++N A G Sbjct: 12 GLVKWFDAGKGFGFITP---TDGSKDVFVHFSAIQSNDFKTLDEGQSVEFS-IENGAKGP 67 Query: 65 YSA 67 +A Sbjct: 68 SAA 70 >gi|254502619|ref|ZP_05114770.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii DFL-11] gi|222438690|gb|EEE45369.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii DFL-11] Length = 307 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 7/71 (9%) Query: 5 GSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K++ DKG+GFITP+ G T DVF+H SAV +GL +L GQ ++++ + D G Sbjct: 217 GVVKFFKSDKGFGFITPDDGET----DVFVHISAVERSGLASLDSGQRISFE-TEPDRRG 271 Query: 64 K-YSAENLKLV 73 K A NL+++ Sbjct: 272 KGPKAVNLQML 282 >gi|260438024|ref|ZP_05791840.1| cold shock protein [Butyrivibrio crossotus DSM 2876] gi|292809503|gb|EFF68708.1| cold shock protein [Butyrivibrio crossotus DSM 2876] Length = 66 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KG+GFI S E+G D+F+H S + G L EGQ V ++ V + A Sbjct: 1 MNKGTVKWFNDQKGFGFI----SDENGKDIFVHFSGIVMDGHKKLEEGQKVEFE-VADGA 55 Query: 62 NGKYSAENLKLV 73 G A N+K++ Sbjct: 56 KGP-QAVNVKVI 66 >gi|254470060|ref|ZP_05083464.1| cold-shock DNA-binding domain protein [Pseudovibrio sp. JE062] gi|211960371|gb|EEA95567.1| cold-shock DNA-binding domain protein [Pseudovibrio sp. JE062] Length = 215 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++ DKG+GFITP+ E +DVF+H SAV +GL L GQ ++++ + D GK Sbjct: 124 GTVKFFKLDKGFGFITPD---EGENDVFVHISAVERSGLTTLDSGQRISFE-TEPDRRGK 179 >gi|148273662|ref|YP_001223223.1| putative cold shock protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170783059|ref|YP_001711393.1| putative cold shock protein [Clavibacter michiganensis subsp. sepedonicus] gi|147831592|emb|CAN02560.1| putative cold shock protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157629|emb|CAQ02827.1| putative cold shock protein [Clavibacter michiganensis subsp. sepedonicus] Length = 72 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG---DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFIT + + E G DVF+H SA+ +G L EGQ V ++ Q Sbjct: 4 GTVKWFNGEKGFGFITVD-AVEGGPAQQDVFVHYSAIEMSGYKVLEEGQRVAFEIGQGSK 62 Query: 62 NGKYSAENLKL 72 AEN+ L Sbjct: 63 G--LQAENVTL 71 >gi|187928399|ref|YP_001898886.1| cold-shock DNA-binding domain-containing protein [Ralstonia pickettii 12J] gi|241662975|ref|YP_002981335.1| cold-shock DNA-binding domain-containing protein [Ralstonia pickettii 12D] gi|309782106|ref|ZP_07676836.1| cold-shock DNA-binding domain protein [Ralstonia sp. 5_7_47FAA] gi|187725289|gb|ACD26454.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|240865002|gb|ACS62663.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] gi|308919172|gb|EFP64839.1| cold-shock DNA-binding domain protein [Ralstonia sp. 5_7_47FAA] Length = 67 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G++KW+N KG+GFITP+ G+D+F H S V G +L EGQ V Y Sbjct: 1 METGTVKWFNDSKGFGFITPD---AGGNDLFAHFSEVQGNGFKSLQEGQKVRY 50 >gi|303240450|ref|ZP_07326967.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus CD2] gi|302592015|gb|EFL61746.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus CD2] Length = 66 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E G+DVF+H SA+ + G L EGQ V ++ NG+ Sbjct: 4 GTVKWFNAGKGFGFI----EREDGEDVFVHFSAINADGYKTLNEGQKVQFEV----ENGQ 55 Query: 65 YSAENLKLVP 74 + ++P Sbjct: 56 RGLQAKNVIP 65 >gi|163857107|ref|YP_001631405.1| cold shock-like protein [Bordetella petrii DSM 12804] gi|163260835|emb|CAP43137.1| cold shock-like protein [Bordetella petrii] Length = 67 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW+N +KGYGFITPE G D+F H S + + G +L E Q V++ Sbjct: 1 METGVVKWFNSEKGYGFITPEA---GGKDLFAHFSEIQANGFKSLEENQRVSF 50 >gi|317496049|ref|ZP_07954409.1| cold-shock' DNA-binding domain-containing protein [Gemella moribillum M424] gi|316913624|gb|EFV35110.1| cold-shock' DNA-binding domain-containing protein [Gemella moribillum M424] Length = 66 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG DVF+H S++ G L EG V ++ V++ A Sbjct: 1 MKQGTVKWFNEEKGFGFIAVEGEK----DVFVHFSSIQKDGFKTLKEGDKVEFE-VEDGA 55 Query: 62 NGKYSA 67 G +A Sbjct: 56 RGPQAA 61 >gi|322433205|ref|YP_004210426.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321165597|gb|ADW71299.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 69 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +++G++KW+N KGYGF+ EG DVF+H S + G +L EG VT+D +Q + Sbjct: 1 MYKGTVKWFNNAKGYGFLGREGDP----DVFVHYSPIQIDGYKSLEEGDAVTFDIIQGE 55 >gi|256397223|ref|YP_003118787.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256363449|gb|ACU76946.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 67 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFI +G G DVF+H SA+ G +L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGYGFIAVDG----GSDVFVHYSAIQMDGYRSLEENQRVEFEISQ 53 >gi|212712025|ref|ZP_03320153.1| hypothetical protein PROVALCAL_03101 [Providencia alcalifaciens DSM 30120] gi|212685547|gb|EEB45075.1| hypothetical protein PROVALCAL_03101 [Providencia alcalifaciens DSM 30120] Length = 66 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI+P + DVF+H SA+ S L EGQ V++ V+N A G Sbjct: 3 GLVKWFNESKGFGFISP---ADGSKDVFVHFSAIQSDSFKTLNEGQKVSFS-VENGAKG 57 >gi|51244787|ref|YP_064671.1| cold-shock protein (CspD) [Desulfotalea psychrophila LSv54] gi|50875824|emb|CAG35664.1| probable cold-shock protein (CspD) [Desulfotalea psychrophila LSv54] Length = 66 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI EG GDD+F+H +++ ++G L EG V++D Sbjct: 3 EGIVKWFNDAKGFGFIDQEG----GDDLFVHHTSINASGFKTLEEGARVSFD 50 >gi|88706396|ref|ZP_01104101.1| Cold shock protein [Congregibacter litoralis KT71] gi|88699332|gb|EAQ96446.1| Cold shock protein [Congregibacter litoralis KT71] Length = 68 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI EG G DVF+H SA+ G LT+GQ V ++ D Sbjct: 6 GTVKWFNESKGFGFIEREG----GPDVFVHFSAIKGDGFKTLTDGQKV--EFTVTDGQKG 59 Query: 65 YSAENLKLV 73 AE++ V Sbjct: 60 PQAEDVVAV 68 >gi|229016428|ref|ZP_04173370.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|229022656|ref|ZP_04179181.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|228738665|gb|EEL89136.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|228744836|gb|EEL94896.1| Cold shock protein cspB [Bacillus cereus AH1273] Length = 67 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ Sbjct: 1 MTVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFE 51 >gi|225459483|ref|XP_002285837.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 228 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KG+GFI P+ + G+D+F+H++++ S G L+EG+ V + V + +G+ Sbjct: 9 GTVKWFSGQKGFGFIAPD---DGGEDLFVHQTSIRSDGFRTLSEGETVEF-AVDHGEDGR 64 Query: 65 YSAENLKLV 73 A + V Sbjct: 65 TKAVEVTAV 73 >gi|108803141|ref|YP_643078.1| cold-shock DNA-binding protein family protein [Rubrobacter xylanophilus DSM 9941] gi|108764384|gb|ABG03266.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus DSM 9941] Length = 67 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW++ +KGYGFI+P+ +E D+F+H + +A G L EG V+Y+ Sbjct: 1 MAQGTVKWFSDEKGYGFISPDDGSE---DLFVHYTGIAGEGFKTLEEGARVSYE 51 >gi|320139464|gb|EFW31338.1| cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus MRSA131] Length = 66 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 ++ G++KW+N +KG+GFI E+G+DVF+H S + G +L +GQ V +D V Sbjct: 1 MNNGTVKWFNSEKGFGFI----ERENGNDVFVHFSNIVGEGYKSLEDGQSVDFDIV 52 >gi|330720265|gb|EGG98627.1| Cold shock protein [gamma proteobacterium IMCC2047] Length = 145 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N KG+GFIT +SG+DVF+H +V G L EGQ V + V+ + Sbjct: 80 EQGTVKWFNVTKGFGFIT----RDSGEDVFVHYRSVRGNGRRTLREGQRVLFKVVEGE 133 >gi|331700130|ref|YP_004336369.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326954819|gb|AEA28516.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans CB1190] Length = 67 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KG+GFI +G G DVF+H S + ++G +L EGQ V ++ Q Sbjct: 3 QGTVKWFNGEKGFGFIQQDG---GGADVFVHYSEIDASGFRSLDEGQRVEFEVGQG 55 >gi|325263738|ref|ZP_08130471.1| conserved domain protein [Clostridium sp. D5] gi|324030776|gb|EGB92058.1| conserved domain protein [Clostridium sp. D5] Length = 65 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI S G+DVF+H S + G +L EGQ V +D V + A G Sbjct: 3 GTVKWFNNQKGYGFI----SDSEGNDVFVHYSGLMMDGFKSLEEGQAVEFD-VTDGAKGP 57 Query: 65 YSAENLKL 72 + KL Sbjct: 58 QAVNVTKL 65 >gi|308274214|emb|CBX30813.1| Major cold shock protein [uncultured Desulfobacterium sp.] Length = 66 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E+G DVF+H SA+ + G +L EG V+++ Q Sbjct: 4 GTVKWFNDKKGFGFI----EQENGPDVFVHHSAINATGFKSLREGDKVSFEIEQ 53 >gi|27366046|ref|NP_761574.1| Cold shock protein [Vibrio vulnificus CMCP6] gi|37679688|ref|NP_934297.1| cold shock protein [Vibrio vulnificus YJ016] gi|320156560|ref|YP_004188939.1| cold shock protein CspA [Vibrio vulnificus MO6-24/O] gi|27362246|gb|AAO11101.1| Cold shock protein [Vibrio vulnificus CMCP6] gi|37198433|dbj|BAC94268.1| cold shock protein [Vibrio vulnificus YJ016] gi|319931872|gb|ADV86736.1| cold shock protein CspA [Vibrio vulnificus MO6-24/O] Length = 70 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI+ + G DVF+H A+ S G L EGQ V+++ Sbjct: 7 GTVKWFNETKGFGFISQD---NGGKDVFVHFRAIVSEGFKTLAEGQKVSFN 54 >gi|226330749|ref|ZP_03806267.1| hypothetical protein PROPEN_04669 [Proteus penneri ATCC 35198] gi|225201544|gb|EEG83898.1| hypothetical protein PROPEN_04669 [Proteus penneri ATCC 35198] Length = 69 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITPE + G+D+F H S + G L GQ V Y ++ Sbjct: 4 GTVKWFNNAKGFGFITPE---KGGEDIFAHYSTIRMEGYRTLKAGQKVNYSTIK 54 >gi|221134864|ref|ZP_03561167.1| cold-shock DNA-binding domain-containing protein [Glaciecola sp. HTCC2999] Length = 74 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI PE E D+F H S + G L GQ V YD VQ Sbjct: 4 GKVKWFNNTKGFGFIVPEDGNE---DIFAHYSTIKMDGYRALKAGQSVHYDMVQ 54 >gi|237732149|ref|ZP_04562630.1| cspB [Citrobacter sp. 30_2] gi|226907688|gb|EEH93606.1| cspB [Citrobacter sp. 30_2] Length = 97 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+NP+KG+GFITP + DVF+H SA+ S L E Q V + Q Sbjct: 34 GLVKWFNPEKGFGFITP---ADGSKDVFVHFSAIQSNEFKTLNENQKVEFGVEQ 84 >gi|188575644|ref|YP_001912573.1| hypothetical protein PXO_04812 [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520096|gb|ACD58041.1| conserved domain protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 61 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 4/52 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KW+N KG+GFI S E+G+DVF+H A+ G +L EGQ V++ VQ Sbjct: 1 MKWFNDAKGFGFI----SRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQ 48 >gi|331007546|ref|ZP_08330704.1| Cold shock protein CspC [gamma proteobacterium IMCC1989] gi|330418644|gb|EGG93152.1| Cold shock protein CspC [gamma proteobacterium IMCC1989] Length = 78 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N +GYGFI+ E +E D+F+H + S G +L EGQ V + + D Sbjct: 15 GTVKWFNNSRGYGFISCEAKSE---DIFVHYRNIQSEGYRSLNEGQSVEFSLAEGD 67 >gi|147812546|emb|CAN68380.1| hypothetical protein VITISV_018906 [Vitis vinifera] Length = 189 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KG+GFI P+ + G+D+F+H++++ S G L+EG+ V + V + +G+ Sbjct: 9 GTVKWFSGQKGFGFIAPD---DGGEDLFVHQTSIRSDGFRTLSEGETVEF-AVDHGEDGR 64 Query: 65 YSAENLKLVPKS 76 A + V S Sbjct: 65 TKAVEVTAVRGS 76 >gi|260772638|ref|ZP_05881554.1| cold shock protein CspD [Vibrio metschnikovii CIP 69.14] gi|260611777|gb|EEX36980.1| cold shock protein CspD [Vibrio metschnikovii CIP 69.14] Length = 73 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PEG E D+F H S + G L GQ V Y+ Q Sbjct: 4 GTVKWFNNAKGFGFICPEGGNE---DIFAHYSTIKMDGYRTLKAGQQVAYEVEQGPKG-- 58 Query: 65 YSAENL 70 Y A N+ Sbjct: 59 YHASNV 64 >gi|261856912|ref|YP_003264195.1| cold-shock DNA-binding domain protein [Halothiobacillus neapolitanus c2] gi|261837381|gb|ACX97148.1| cold-shock DNA-binding domain protein [Halothiobacillus neapolitanus c2] Length = 143 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N DKG+GFI E+G+D+F+H AV L EGQ V Y Sbjct: 80 GHVKWFNTDKGFGFIV----RENGEDLFVHFRAVGDGSTLQLVEGQKVEY 125 >gi|189426058|ref|YP_001953235.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ] gi|189422317|gb|ACD96715.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ] Length = 66 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+ E+G+DVF H SA+ G +L EG VT++ + Sbjct: 4 GTVKWFNDSKGFGFL----EQENGEDVFCHFSAITGEGFKSLAEGDRVTFEVTK 53 >gi|42780307|ref|NP_977554.1| cold shock protein CspA [Bacillus cereus ATCC 10987] gi|228906859|ref|ZP_04070728.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|228957503|ref|ZP_04119255.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228984303|ref|ZP_04144484.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229042975|ref|ZP_04190706.1| Cold shock protein cspB [Bacillus cereus AH676] gi|229084220|ref|ZP_04216504.1| Cold shock protein cspB [Bacillus cereus Rock3-44] gi|229095719|ref|ZP_04226698.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|229101818|ref|ZP_04232533.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|229114669|ref|ZP_04244083.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|229143839|ref|ZP_04272258.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|229149436|ref|ZP_04277672.1| Cold shock protein cspB [Bacillus cereus m1550] gi|229160184|ref|ZP_04288183.1| Cold shock protein cspB [Bacillus cereus R309803] gi|229195434|ref|ZP_04322202.1| Cold shock protein cspB [Bacillus cereus m1293] gi|296501833|ref|YP_003663533.1| cold shock protein [Bacillus thuringiensis BMB171] gi|42736226|gb|AAS40162.1| cold shock protein CspA [Bacillus cereus ATCC 10987] gi|209972092|gb|ACJ03557.1| cold shock protein [Bacillus cereus] gi|209972100|gb|ACJ03561.1| cold shock protein [Bacillus thuringiensis serovar tohokuensis] gi|228587974|gb|EEK46024.1| Cold shock protein cspB [Bacillus cereus m1293] gi|228623145|gb|EEK79972.1| Cold shock protein cspB [Bacillus cereus R309803] gi|228634078|gb|EEK90671.1| Cold shock protein cspB [Bacillus cereus m1550] gi|228639600|gb|EEK96011.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|228668734|gb|EEL24162.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|228681611|gb|EEL35773.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|228687552|gb|EEL41451.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|228699098|gb|EEL51799.1| Cold shock protein cspB [Bacillus cereus Rock3-44] gi|228726315|gb|EEL77541.1| Cold shock protein cspB [Bacillus cereus AH676] gi|228775420|gb|EEM23805.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228802095|gb|EEM48960.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228852863|gb|EEM97648.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|296322885|gb|ADH05813.1| cold shock protein [Bacillus thuringiensis BMB171] gi|324325246|gb|ADY20506.1| cold shock protein CspA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 67 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ Sbjct: 1 MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFE 51 >gi|307243261|ref|ZP_07525432.1| major cold shock protein CspA [Peptostreptococcus stomatis DSM 17678] gi|306493389|gb|EFM65371.1| major cold shock protein CspA [Peptostreptococcus stomatis DSM 17678] Length = 66 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N +KG+GFI+ EG +D+F+H SA+ G +L EGQ V ++ V + Sbjct: 4 GTVKWFNNEKGFGFISVEGE----NDMFVHFSAIQGDGYKSLEEGQKVEFEVVDGE 55 >gi|284990776|ref|YP_003409330.1| cold-shock DNA-binding domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284064021|gb|ADB74959.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus DSM 43160] Length = 310 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P+ + G DVF+H SA+A G F L EGQ V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIEPD---DGGQDVFVHFSAIADEGGFRTLDEGQQVEFEASQ 55 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 4/52 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55 G++KW+N +KG+GFI + + G DVF+H SA++ G + +L EGQ V ++ Sbjct: 246 GTVKWFNAEKGFGFIEAD---DGGPDVFVHFSAISDRGGYRSLDEGQRVEFE 294 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQ 58 + W++ DKG+GFI P+ E G DVF+H S +A S G +L EGQ V + Q Sbjct: 122 VTWFDNDKGFGFIQPD---EDGPDVFVHFSQIADSGGYRSLDEGQRVEFAVTQ 171 >gi|322421190|ref|YP_004200413.1| cold-shock DNA-binding domain-containing protein [Geobacter sp. M18] gi|320127577|gb|ADW15137.1| cold-shock DNA-binding domain protein [Geobacter sp. M18] Length = 66 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI E+G DVF+H S++ G +L EG VT++ VQ A G Sbjct: 4 GVVKWFNDAKGFGFI----EQENGGDVFVHFSSIQGDGFKSLAEGDSVTFEVVQG-AKGP 58 Query: 65 YSAENLK 71 +A +K Sbjct: 59 QAANVVK 65 >gi|330504261|ref|YP_004381130.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] gi|328918547|gb|AEB59378.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] Length = 69 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI ESG DVF+H A+ G L EGQ V + Q Sbjct: 7 GTVKWFNDSKGYGFI----QRESGPDVFVHYRAIRGEGHRTLVEGQKVEFGVTQ 56 >gi|312795412|ref|YP_004028334.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] gi|312167187|emb|CBW74190.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] Length = 67 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFIT + G+D+F H S + + G +L E Q V+++ V+N Sbjct: 1 METGIVKWFNDAKGYGFITAD---SGGEDLFAHFSEIRAEGFKSLKESQRVSFE-VKNGX 56 Query: 62 NGKYSA 67 GK +A Sbjct: 57 KGKQAA 62 >gi|285017922|ref|YP_003375633.1| cold shock protein [Xanthomonas albilineans GPE PC73] gi|283473140|emb|CBA15646.1| probable cold shock protein [Xanthomonas albilineans] Length = 73 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI S +G+DVF+H A+ + G +L EGQ V++ VQ Sbjct: 11 GLVKWFNDAKGFGFI----SRTNGEDVFVHFRAIQTQGFKSLKEGQKVSFIVVQ 60 >gi|237747860|ref|ZP_04578340.1| cold-shock DNA-binding protein family protein [Oxalobacter formigenes OXCC13] gi|229379222|gb|EEO29313.1| cold-shock DNA-binding protein family protein [Oxalobacter formigenes OXCC13] Length = 78 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N KG+GFITP+ +G D+F H S + + G +L EGQ V ++ Sbjct: 12 METGTVKWFNNSKGFGFITPD---NNGADLFAHFSEIQAGGFKSLEEGQKVKFE 62 >gi|163749217|ref|ZP_02156467.1| putative Cold shock-like protein [Shewanella benthica KT99] gi|161331287|gb|EDQ02176.1| putative Cold shock-like protein [Shewanella benthica KT99] Length = 70 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + G DVF+H ++ S G L EGQ V+++ Q Sbjct: 7 GLVKWFNEEKGFGFITQD---NGGADVFVHFRSITSDGFKTLAEGQKVSFEVEQ 57 >gi|94269264|ref|ZP_01291414.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1] gi|93451280|gb|EAT02166.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1] Length = 66 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KGYGFI + +SG DVF+H +A+ G +L EG V ++ V Sbjct: 3 EGTVKWFNDAKGYGFI----AQDSGSDVFVHHTAIEGQGFKSLQEGARVEFEIV 52 >gi|15600954|ref|NP_232584.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586738|ref|ZP_01676521.1| cold shock DNA-binding domain protein [Vibrio cholerae 2740-80] gi|121728217|ref|ZP_01681251.1| cold shock DNA-binding domain protein [Vibrio cholerae V52] gi|147671812|ref|YP_001215928.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae O395] gi|153214423|ref|ZP_01949394.1| cold shock DNA-binding domain protein [Vibrio cholerae 1587] gi|153802359|ref|ZP_01956945.1| cold shock DNA-binding domain protein [Vibrio cholerae MZO-3] gi|153816780|ref|ZP_01969447.1| cold shock DNA-binding domain protein [Vibrio cholerae NCTC 8457] gi|153825010|ref|ZP_01977677.1| conserved domain protein [Vibrio cholerae MZO-2] gi|153830508|ref|ZP_01983175.1| cold shock DNA-binding domain protein [Vibrio cholerae 623-39] gi|227811808|ref|YP_002811818.1| cold shock DNA-binding domain protein [Vibrio cholerae M66-2] gi|229506650|ref|ZP_04396159.1| cold shock protein CspE [Vibrio cholerae BX 330286] gi|229510552|ref|ZP_04400032.1| cold shock protein CspE [Vibrio cholerae B33] gi|229514684|ref|ZP_04404145.1| cold shock protein CspE [Vibrio cholerae TMA 21] gi|229517316|ref|ZP_04406761.1| cold shock protein CspE [Vibrio cholerae RC9] gi|229522853|ref|ZP_04412267.1| cold shock protein CspE [Vibrio cholerae TM 11079-80] gi|229526190|ref|ZP_04415594.1| cold shock protein CspE [Vibrio cholerae bv. albensis VL426] gi|229527836|ref|ZP_04417227.1| cold shock protein CspE [Vibrio cholerae 12129(1)] gi|229605127|ref|YP_002875831.1| cold shock protein CspE [Vibrio cholerae MJ-1236] gi|254225227|ref|ZP_04918840.1| cold shock DNA-binding domain protein [Vibrio cholerae V51] gi|254286678|ref|ZP_04961633.1| cold shock DNA-binding domain protein [Vibrio cholerae AM-19226] gi|254850617|ref|ZP_05239967.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae MO10] gi|255746005|ref|ZP_05419952.1| cold shock protein CspE [Vibrio cholera CIRS 101] gi|258620062|ref|ZP_05715101.1| cold shock DNA-binding domain protein [Vibrio mimicus VM573] gi|258624862|ref|ZP_05719790.1| cold shock DNA-binding domain protein [Vibrio mimicus VM603] gi|261212646|ref|ZP_05926930.1| cold shock protein CspE [Vibrio sp. RC341] gi|262162157|ref|ZP_06031172.1| cold shock protein CspE [Vibrio cholerae INDRE 91/1] gi|262164800|ref|ZP_06032538.1| cold shock protein CspE [Vibrio mimicus VM223] gi|262167820|ref|ZP_06035521.1| cold shock protein CspE [Vibrio cholerae RC27] gi|262172987|ref|ZP_06040664.1| cold shock protein CspE [Vibrio mimicus MB-451] gi|262403363|ref|ZP_06079923.1| cold shock protein CspE [Vibrio sp. RC586] gi|297579689|ref|ZP_06941616.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae RC385] gi|298500039|ref|ZP_07009845.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae MAK 757] gi|9657576|gb|AAF96097.1| cold shock DNA-binding domain protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549035|gb|EAX59072.1| cold shock DNA-binding domain protein [Vibrio cholerae 2740-80] gi|121629540|gb|EAX61964.1| cold shock DNA-binding domain protein [Vibrio cholerae V52] gi|124115372|gb|EAY34192.1| cold shock DNA-binding domain protein [Vibrio cholerae 1587] gi|124122078|gb|EAY40821.1| cold shock DNA-binding domain protein [Vibrio cholerae MZO-3] gi|125622326|gb|EAZ50647.1| cold shock DNA-binding domain protein [Vibrio cholerae V51] gi|126512583|gb|EAZ75177.1| cold shock DNA-binding domain protein [Vibrio cholerae NCTC 8457] gi|146314195|gb|ABQ18735.1| cold shock DNA-binding domain protein [Vibrio cholerae O395] gi|148874003|gb|EDL72138.1| cold shock DNA-binding domain protein [Vibrio cholerae 623-39] gi|149741335|gb|EDM55369.1| conserved domain protein [Vibrio cholerae MZO-2] gi|150423262|gb|EDN15208.1| cold shock DNA-binding domain protein [Vibrio cholerae AM-19226] gi|227010950|gb|ACP07161.1| cold shock DNA-binding domain protein [Vibrio cholerae M66-2] gi|227014809|gb|ACP11018.1| cold shock DNA-binding domain protein [Vibrio cholerae O395] gi|229334198|gb|EEN99683.1| cold shock protein CspE [Vibrio cholerae 12129(1)] gi|229336348|gb|EEO01366.1| cold shock protein CspE [Vibrio cholerae bv. albensis VL426] gi|229340070|gb|EEO05078.1| cold shock protein CspE [Vibrio cholerae TM 11079-80] gi|229345352|gb|EEO10325.1| cold shock protein CspE [Vibrio cholerae RC9] gi|229348664|gb|EEO13622.1| cold shock protein CspE [Vibrio cholerae TMA 21] gi|229352997|gb|EEO17937.1| cold shock protein CspE [Vibrio cholerae B33] gi|229357001|gb|EEO21919.1| cold shock protein CspE [Vibrio cholerae BX 330286] gi|229371613|gb|ACQ62035.1| cold shock protein CspE [Vibrio cholerae MJ-1236] gi|254846322|gb|EET24736.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae MO10] gi|255735759|gb|EET91157.1| cold shock protein CspE [Vibrio cholera CIRS 101] gi|258582860|gb|EEW07681.1| cold shock DNA-binding domain protein [Vibrio mimicus VM603] gi|258587420|gb|EEW12130.1| cold shock DNA-binding domain protein [Vibrio mimicus VM573] gi|260837711|gb|EEX64388.1| cold shock protein CspE [Vibrio sp. RC341] gi|261890345|gb|EEY36332.1| cold shock protein CspE [Vibrio mimicus MB-451] gi|262023728|gb|EEY42428.1| cold shock protein CspE [Vibrio cholerae RC27] gi|262027180|gb|EEY45847.1| cold shock protein CspE [Vibrio mimicus VM223] gi|262028232|gb|EEY46890.1| cold shock protein CspE [Vibrio cholerae INDRE 91/1] gi|262350862|gb|EEY99995.1| cold shock protein CspE [Vibrio sp. RC586] gi|297535335|gb|EFH74169.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae RC385] gi|297542020|gb|EFH78071.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae MAK 757] gi|327485405|gb|AEA79811.1| Cold shock protein CspE [Vibrio cholerae LMA3894-4] Length = 69 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V + Q + Sbjct: 7 GTVKWFNETKGFGFI----KQENGPDVFAHFSAIQGDGFRTLAEGQKVEFVITQGQKGPQ 62 Query: 65 YSAENLKLV 73 AE++K++ Sbjct: 63 --AESIKVL 69 >gi|28900407|ref|NP_800062.1| cold shock DNA-binding domain-containing protein [Vibrio parahaemolyticus RIMD 2210633] gi|91227011|ref|ZP_01261548.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 12G01] gi|153837377|ref|ZP_01990044.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus AQ3810] gi|254228898|ref|ZP_04922320.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25] gi|260362063|ref|ZP_05775059.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus K5030] gi|260877358|ref|ZP_05889713.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AN-5034] gi|260898395|ref|ZP_05906891.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus Peru-466] gi|260902872|ref|ZP_05911267.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AQ4037] gi|262396755|ref|YP_003288608.1| cold shock protein CspE [Vibrio sp. Ex25] gi|269968331|ref|ZP_06182351.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 40B] gi|28808718|dbj|BAC61895.1| cold shock DNA-binding domain protein [Vibrio parahaemolyticus RIMD 2210633] gi|91188813|gb|EAS75099.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 12G01] gi|149749292|gb|EDM60071.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus AQ3810] gi|151938575|gb|EDN57411.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25] gi|262340349|gb|ACY54143.1| cold shock protein CspE [Vibrio sp. Ex25] gi|269827049|gb|EEZ81363.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 40B] gi|308085077|gb|EFO34772.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus Peru-466] gi|308090568|gb|EFO40263.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AN-5034] gi|308107799|gb|EFO45339.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AQ4037] gi|308113783|gb|EFO51323.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus K5030] gi|328470361|gb|EGF41272.1| cold shock protein CspE [Vibrio parahaemolyticus 10329] Length = 69 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V ++V + Sbjct: 7 GTVKWFNETKGFGFI----QQENGPDVFAHFSAITGDGFRTLVEGQKV--EFVISQGQKG 60 Query: 65 YSAENLKLV 73 AE +K++ Sbjct: 61 PQAEQIKVL 69 >gi|330447711|ref|ZP_08311359.1| cold shock protein CspG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491902|dbj|GAA05856.1| cold shock protein CspG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 70 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KG+GFIT + DVF+H A+ S G L +GQ V++D Q Sbjct: 7 GLVKWFNEEKGFGFITQDNGAA---DVFVHFQAIVSDGFKTLMDGQKVSFDVEQ 57 >gi|117619345|ref|YP_858396.1| hypothetical protein AHA_3962 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560752|gb|ABK37700.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 70 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++K++N +KG+GFI+P T+ DVF+H SA+ + G L EGQ V + Q Sbjct: 7 GTVKFFNAEKGFGFISP---TDGSKDVFVHFSAIQTPGFKTLDEGQRVEFTIEQ 57 >gi|291285774|ref|YP_003502592.1| Cold shock-like protein cspB [Escherichia coli O55:H7 str. CB9615] gi|331666060|ref|ZP_08366954.1| conserved domain protein [Escherichia coli TA143] gi|290765647|gb|ADD59608.1| Cold shock-like protein cspB [Escherichia coli O55:H7 str. CB9615] gi|331057111|gb|EGI29105.1| conserved domain protein [Escherichia coli TA143] Length = 71 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI+P + DVF+H SA+ + L EGQ VT+ V++ A G Sbjct: 7 GLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFS-VESGAKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|304310767|ref|YP_003810365.1| Cold shock-like protein [gamma proteobacterium HdN1] gi|301796500|emb|CBL44708.1| Cold shock-like protein [gamma proteobacterium HdN1] Length = 69 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N +KG+GFIT + G DVF+H A+ + G L EGQ V+++ Sbjct: 6 GTVKWFNEEKGFGFITQD---NGGPDVFVHFRAIQAEGFKTLKEGQPVSFN 53 >gi|296271250|ref|YP_003653882.1| cold-shock DNA-binding domain-containing protein [Thermobispora bispora DSM 43833] gi|296094037|gb|ADG89989.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM 43833] Length = 66 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW++ +KGYGFI +G G DVF+H +A+ G +L +GQ V +D + Sbjct: 3 QGTVKWFDAEKGYGFIAVDG----GKDVFVHYTAILMDGFKSLEQGQRVEFDITEG 54 >gi|266625124|ref|ZP_06118059.1| conserved domain protein [Clostridium hathewayi DSM 13479] gi|288862975|gb|EFC95273.1| conserved domain protein [Clostridium hathewayi DSM 13479] Length = 65 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +G++KW+N KGYGFI S E G+DVF+H S + G +L EG V +D V Sbjct: 2 KGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLDEGASVEFDVV 51 >gi|213966043|ref|ZP_03394232.1| conserved domain protein [Corynebacterium amycolatum SK46] gi|213951338|gb|EEB62731.1| conserved domain protein [Corynebacterium amycolatum SK46] Length = 67 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI P + G+DVF+H S + G L E Q V ++ Sbjct: 3 QGTVKWFNSEKGFGFIAP---ADGGNDVFVHYSEIQGTGFKTLEENQAVEFE 51 >gi|30020489|ref|NP_832120.1| cold shock protein [Bacillus cereus ATCC 14579] gi|206971664|ref|ZP_03232614.1| cold shock protein CspA [Bacillus cereus AH1134] gi|218231164|ref|YP_002367103.1| cold shock protein CspA [Bacillus cereus B4264] gi|218897365|ref|YP_002445776.1| cold shock protein CspA [Bacillus cereus G9842] gi|228901011|ref|ZP_04065222.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|228921113|ref|ZP_04084445.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228939557|ref|ZP_04102143.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952772|ref|ZP_04114844.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958674|ref|ZP_04120390.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228965387|ref|ZP_04126478.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228972409|ref|ZP_04133019.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979023|ref|ZP_04139386.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|229044152|ref|ZP_04191834.1| Cold shock protein cspB [Bacillus cereus AH676] gi|229069923|ref|ZP_04203203.1| Cold shock protein cspB [Bacillus cereus F65185] gi|229079591|ref|ZP_04212127.1| Cold shock protein cspB [Bacillus cereus Rock4-2] gi|229109840|ref|ZP_04239424.1| Cold shock protein cspB [Bacillus cereus Rock1-15] gi|229127796|ref|ZP_04256782.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4] gi|229144998|ref|ZP_04273393.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|229150609|ref|ZP_04278823.1| Cold shock protein cspB [Bacillus cereus m1550] gi|229178759|ref|ZP_04306122.1| Cold shock protein cspB [Bacillus cereus 172560W] gi|229190497|ref|ZP_04317494.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|296502953|ref|YP_003664653.1| cold shock protein [Bacillus thuringiensis BMB171] gi|49035523|sp|Q81DK5|CSPE_BACCR RecName: Full=Cold shock-like protein CspE gi|29896040|gb|AAP09321.1| Cold shock protein [Bacillus cereus ATCC 14579] gi|206733649|gb|EDZ50821.1| cold shock protein CspA [Bacillus cereus AH1134] gi|218159121|gb|ACK59113.1| cold shock protein CspA [Bacillus cereus B4264] gi|218544454|gb|ACK96848.1| cold shock protein CspA [Bacillus cereus G9842] gi|228592842|gb|EEK50664.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|228604698|gb|EEK62156.1| Cold shock protein cspB [Bacillus cereus 172560W] gi|228632696|gb|EEK89311.1| Cold shock protein cspB [Bacillus cereus m1550] gi|228638447|gb|EEK94882.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|228655561|gb|EEL11413.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4] gi|228673592|gb|EEL28852.1| Cold shock protein cspB [Bacillus cereus Rock1-15] gi|228703705|gb|EEL56155.1| Cold shock protein cspB [Bacillus cereus Rock4-2] gi|228713191|gb|EEL65086.1| Cold shock protein cspB [Bacillus cereus F65185] gi|228725177|gb|EEL76452.1| Cold shock protein cspB [Bacillus cereus AH676] gi|228780687|gb|EEM28902.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|228787284|gb|EEM35253.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794301|gb|EEM41816.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228800990|gb|EEM47891.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228806891|gb|EEM53438.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820100|gb|EEM66139.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228838529|gb|EEM83838.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228858608|gb|EEN03057.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|296324005|gb|ADH06933.1| cold shock protein [Bacillus thuringiensis BMB171] gi|326940103|gb|AEA15999.1| cold shock protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 67 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M G +KW+N +KG+GFI G+DVF+H SA+ G +L EGQ V+++ Sbjct: 1 MTLTGKVKWFNSEKGFGFI----EVADGNDVFVHFSAITGDGFKSLDEGQEVSFE 51 >gi|294636901|ref|ZP_06715229.1| conserved domain protein [Edwardsiella tarda ATCC 23685] gi|291089892|gb|EFE22453.1| conserved domain protein [Edwardsiella tarda ATCC 23685] Length = 81 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + G DVF+H SA+ G L EGQ V Y +Q+ G Sbjct: 18 GQVKWFNESKGFGFIEQH---DGGKDVFVHFSAITGDGFKTLAEGQRVEYT-IQDSPRGP 73 Query: 65 YSAENLKL 72 +A + L Sbjct: 74 AAANVVAL 81 >gi|323185910|gb|EFZ71267.1| cold shock-like protein cspI [Escherichia coli 1357] Length = 62 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+NP+KG+GFITP+ ++ DVF+H SA+ S LTE Q V + ++N G + Sbjct: 1 MKWFNPEKGFGFITPKDGSK---DVFVHFSAIQSNDFKTLTENQEVEFG-IENGPKGPAA 56 Query: 67 AENLKL 72 + L Sbjct: 57 VHVVAL 62 >gi|15602520|ref|NP_245592.1| MsmB [Pasteurella multocida subsp. multocida str. Pm70] gi|12720931|gb|AAK02739.1| MsmB [Pasteurella multocida subsp. multocida str. Pm70] Length = 69 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFITP + G D+F+H S + + L EG V Y VQ+ G Sbjct: 6 GTVKWFNSDKGFGFITP---ADGGKDLFVHFSGIIGSNYRTLNEGDRVEYS-VQDSQRGP 61 Query: 65 YSAENLKLV 73 SA ++K + Sbjct: 62 -SAIDVKAI 69 >gi|302544963|ref|ZP_07297305.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302462581|gb|EFL25674.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653] Length = 68 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KGYGFI EG G DVF+H S++ G +L + Q V + VQ Sbjct: 3 QGTVKWFNAEKGYGFIAQEG---GGPDVFVHYSSINGNGYRSLADDQRVEFQIVQ 54 >gi|317124225|ref|YP_004098337.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] gi|315588313|gb|ADU47610.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] Length = 66 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P TE G DVF+H S + + G +L E Q V +D Q Sbjct: 3 QGTVKWFNSEKGFGFIAP---TE-GPDVFVHYSEIQTNGYRSLEENQAVEFDVEQ 53 >gi|89073384|ref|ZP_01159908.1| putative cold shock-like protein CspD [Photobacterium sp. SKA34] gi|90579121|ref|ZP_01234931.1| putative cold shock-like protein CspD [Vibrio angustum S14] gi|89050871|gb|EAR56345.1| putative cold shock-like protein CspD [Photobacterium sp. SKA34] gi|90439954|gb|EAS65135.1| putative cold shock-like protein CspD [Vibrio angustum S14] Length = 73 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE + DD+F H S + G L GQ V Y+ VQ G Sbjct: 4 GTVKWFNNAKGFGFICPE---DGEDDIFAHYSTIQMEGYRTLKAGQQVNYE-VQTGPKGY 59 Query: 65 YSAE 68 +++E Sbjct: 60 HASE 63 >gi|308186235|ref|YP_003930366.1| Cold shock-like protein cspD [Pantoea vagans C9-1] gi|308056745|gb|ADO08917.1| Cold shock-like protein cspD [Pantoea vagans C9-1] Length = 73 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D Sbjct: 4 GTVKWFNNSKGFGFICPVG---GGDDIFAHYSTIQMEGYRTLKAGQQVQFD 51 >gi|297538451|ref|YP_003674220.1| cold-shock DNA-binding domain-containing protein [Methylotenera sp. 301] gi|297257798|gb|ADI29643.1| cold-shock DNA-binding domain protein [Methylotenera sp. 301] Length = 67 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFITP+ GDD+F H SA+ +G +L E V++D Sbjct: 4 GLVKWFNDSKGFGFITPDA---GGDDLFAHFSAIVDSGYKSLKENDRVSFD 51 >gi|292487806|ref|YP_003530681.1| cold shock-like protein CspD [Erwinia amylovora CFBP1430] gi|292899035|ref|YP_003538404.1| cold shock-like protein [Erwinia amylovora ATCC 49946] gi|291198883|emb|CBJ45993.1| cold shock-like protein [Erwinia amylovora ATCC 49946] gi|291553228|emb|CBA20273.1| Cold shock-like protein cspD (CPS-D) [Erwinia amylovora CFBP1430] gi|312171924|emb|CBX80181.1| Cold shock-like protein cspD (CPS-D) [Erwinia amylovora ATCC BAA-2158] Length = 75 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPAG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQ 54 >gi|259047117|ref|ZP_05737518.1| cold shock domain protein CspD [Granulicatella adiacens ATCC 49175] gi|259036167|gb|EEW37422.1| cold shock domain protein CspD [Granulicatella adiacens ATCC 49175] Length = 71 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 36/51 (70%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N +KGYGFI +T++ +D+F+H + + + G +L EGQ VT++ Sbjct: 4 GIVKWFNNEKGYGFIR---NTKTDEDIFVHFTGIVAEGFKSLKEGQKVTFE 51 >gi|226365143|ref|YP_002782926.1| cold shock protein [Rhodococcus opacus B4] gi|226243633|dbj|BAH53981.1| cold shock protein [Rhodococcus opacus B4] Length = 67 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI PE + DVF+H S + S G L E Q V+++ Q + Sbjct: 3 EGIVKWFNSEKGFGFIAPE---DGSADVFVHYSEIQSGGFRTLEENQRVSFEIGQGN 56 >gi|146311055|ref|YP_001176129.1| cold-shock DNA-binding protein family protein [Enterobacter sp. 638] gi|145317931|gb|ABP60078.1| cold-shock DNA-binding protein family [Enterobacter sp. 638] Length = 73 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFD 51 >gi|82702264|ref|YP_411830.1| cold-shock DNA-binding domain-containing protein [Nitrosospira multiformis ATCC 25196] gi|82410329|gb|ABB74438.1| cold-shock DNA-binding protein family [Nitrosospira multiformis ATCC 25196] Length = 71 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 8/67 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFITP+ E +D+F H SA+ + G L EGQ VT++ + N Sbjct: 4 GTVKWFNGTKGFGFITPD---EGNEDLFAHFSAINIFGNTGGFKTLQEGQKVTFE-ITNG 59 Query: 61 ANGKYSA 67 GK ++ Sbjct: 60 PKGKQAS 66 >gi|71725897|gb|AAZ39067.1| cold shock protein [Exiguobacterium aurantiacum] Length = 67 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI EG G DVF+H SA+ + G +L EGQ V ++ V + Sbjct: 4 GIVKWFNLEKGFGFIEVEG----GKDVFVHFSAIQTDGYKSLDEGQEVEFEIVDGE 55 >gi|94985111|ref|YP_604475.1| cold-shock DNA-binding domain-containing protein [Deinococcus geothermalis DSM 11300] gi|94555392|gb|ABF45306.1| cold-shock DNA-binding domain protein [Deinococcus geothermalis DSM 11300] Length = 89 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI G+ DVF+H SA+ S+G L EG V ++ N Sbjct: 3 QGRVKWFNVEKGYGFIEHPGNP----DVFVHYSAIQSSGFRKLNEGDEVEFEVEPGQGNK 58 Query: 64 KYSAENL 70 A+N+ Sbjct: 59 GPQAKNV 65 >gi|238924737|ref|YP_002938253.1| putative cold-shock DNA-binding domain protein [Eubacterium rectale ATCC 33656] gi|238876412|gb|ACR76119.1| putative cold-shock DNA-binding domain protein [Eubacterium rectale ATCC 33656] gi|291526111|emb|CBK91698.1| cold-shock DNA-binding protein family [Eubacterium rectale DSM 17629] gi|291527154|emb|CBK92740.1| cold-shock DNA-binding protein family [Eubacterium rectale M104/1] Length = 67 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N KGYGFIT E G DVF+H S + G L EG V +D Sbjct: 1 MSKGTVKWFNNQKGYGFITA----EDGKDVFVHFSGLNMEGFKTLEEGAAVEFD 50 >gi|163939029|ref|YP_001643913.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229010524|ref|ZP_04167726.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048] gi|229056860|ref|ZP_04196256.1| Cold shock-like protein cspB [Bacillus cereus AH603] gi|229132025|ref|ZP_04260888.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196] gi|229166069|ref|ZP_04293831.1| Cold shock-like protein cspB [Bacillus cereus AH621] gi|2493761|sp|Q45096|CSPA_BACCE RecName: Full=Major cold shock protein CspA gi|1405470|emb|CAA63607.1| CspA protein [Bacillus cereus] gi|163861226|gb|ABY42285.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] gi|209972082|gb|ACJ03552.1| cold shock protein [Bacillus thuringiensis serovar bolivia] gi|209972084|gb|ACJ03553.1| cold shock protein [Bacillus weihenstephanensis] gi|209972102|gb|ACJ03562.1| cold shock protein [Bacillus thuringiensis serovar vazensis] gi|209972104|gb|ACJ03563.1| cold shock protein [Bacillus mycoides] gi|209972106|gb|ACJ03564.1| cold shock protein [Bacillus weihenstephanensis] gi|210077343|gb|ACJ06958.1| cold shock protein [Bacillus thuringiensis serovar navarrensis] gi|228617378|gb|EEK74441.1| Cold shock-like protein cspB [Bacillus cereus AH621] gi|228651425|gb|EEL07397.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196] gi|228720388|gb|EEL71961.1| Cold shock-like protein cspB [Bacillus cereus AH603] gi|228750722|gb|EEM00546.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048] Length = 67 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ D Sbjct: 1 MTVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFEI--ED 54 Query: 61 ANGKYSAENL 70 N A+N+ Sbjct: 55 GNRGPQAKNV 64 >gi|319440471|ref|ZP_07989627.1| hypothetical protein CvarD4_01780 [Corynebacterium variabile DSM 44702] Length = 67 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KGYGFI P + G DVF+H S + G L E Q V ++ Sbjct: 3 QGTVKWFNAEKGYGFIAP---NDGGADVFVHYSEIQGNGFRTLEENQQVEFE 51 >gi|291280012|ref|YP_003496847.1| cold shock protein [Deferribacter desulfuricans SSM1] gi|290754714|dbj|BAI81091.1| cold shock protein [Deferribacter desulfuricans SSM1] Length = 66 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N KGYGFIT ++G DVF+H +++ G +L EG+ V ++ Sbjct: 1 MREGTVKWFNDSKGYGFITE----DNGQDVFVHHTSIQKDGFKSLAEGERVKFE 50 >gi|15596356|ref|NP_249850.1| cold-shock protein [Pseudomonas aeruginosa PAO1] gi|116049091|ref|YP_792107.1| cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14] gi|152986008|ref|YP_001349574.1| cold-shock protein [Pseudomonas aeruginosa PA7] gi|218892877|ref|YP_002441746.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58] gi|254234293|ref|ZP_04927616.1| hypothetical protein PACG_00132 [Pseudomonas aeruginosa C3719] gi|254239529|ref|ZP_04932851.1| hypothetical protein PA2G_00143 [Pseudomonas aeruginosa 2192] gi|296390471|ref|ZP_06879946.1| putative cold-shock protein [Pseudomonas aeruginosa PAb1] gi|313106131|ref|ZP_07792386.1| putative cold-shock protein [Pseudomonas aeruginosa 39016] gi|9947082|gb|AAG04548.1|AE004546_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1] gi|115584312|gb|ABJ10327.1| probable cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126166224|gb|EAZ51735.1| hypothetical protein PACG_00132 [Pseudomonas aeruginosa C3719] gi|126192907|gb|EAZ56970.1| hypothetical protein PA2G_00143 [Pseudomonas aeruginosa 2192] gi|150961166|gb|ABR83191.1| probable cold-shock protein [Pseudomonas aeruginosa PA7] gi|218773105|emb|CAW28917.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58] gi|310878888|gb|EFQ37482.1| putative cold-shock protein [Pseudomonas aeruginosa 39016] Length = 69 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI +SG DVF+H A+ G +L EGQ V + +Q Sbjct: 7 GTVKWFNDAKGYGFI----QRDSGPDVFVHYRAIRGEGHRSLVEGQKVEFSVIQ 56 >gi|118616248|ref|YP_904580.1| cold shock protein a, CspA [Mycobacterium ulcerans Agy99] gi|118568358|gb|ABL03109.1| cold shock protein a, CspA [Mycobacterium ulcerans Agy99] Length = 67 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFITP+ T+ D+F+H S + +G +L E Q V ++ Q Sbjct: 3 QGTVKWFNGEKGFGFITPDDGTK---DLFVHYSEIQCSGYRSLEENQRVQFEVEQ 54 >gi|197117042|ref|YP_002137469.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|197086402|gb|ACH37673.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] Length = 66 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI ++G DVF+H S++ G +L EG VT+D VQ A G Sbjct: 4 GVVKWFNDAKGFGFI----EQDNGVDVFVHFSSIQGDGFKSLVEGDSVTFDVVQG-AKGP 58 Query: 65 YSAENLK 71 +A +K Sbjct: 59 QAANVVK 65 >gi|163940200|ref|YP_001645084.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229011681|ref|ZP_04168864.1| Cold shock protein cspB [Bacillus mycoides DSM 2048] gi|229060078|ref|ZP_04197449.1| Cold shock protein cspB [Bacillus cereus AH603] gi|229133259|ref|ZP_04262090.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196] gi|229167245|ref|ZP_04294986.1| Cold shock protein cspB [Bacillus cereus AH621] gi|163862397|gb|ABY43456.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] gi|228616283|gb|EEK73367.1| Cold shock protein cspB [Bacillus cereus AH621] gi|228650203|gb|EEL06207.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196] gi|228719297|gb|EEL70905.1| Cold shock protein cspB [Bacillus cereus AH603] gi|228749639|gb|EEL99481.1| Cold shock protein cspB [Bacillus mycoides DSM 2048] Length = 67 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G DVF+H SA+ G +L EGQ V+++ D Sbjct: 1 MTLTGKVKWFNSEKGFGFI----EVADGSDVFVHFSAITGDGFKSLDEGQEVSFEV--ED 54 Query: 61 ANGKYSAENL 70 N A+N+ Sbjct: 55 GNRGPQAKNV 64 >gi|84495365|ref|ZP_00994484.1| cold shock protein [Janibacter sp. HTCC2649] gi|84384858|gb|EAQ00738.1| cold shock protein [Janibacter sp. HTCC2649] Length = 67 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAIDTQGYRSLDENQQVEFEVTQ 54 >gi|302385946|ref|YP_003821768.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] gi|302196574|gb|ADL04145.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] Length = 66 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N KG+GFI E G+D+F+H S +A G +L +GQ V ++ Sbjct: 1 MKKGTVKWFNAQKGFGFICD----EEGNDIFVHFSGLAMEGFKSLEDGQSVIFE 50 >gi|152997623|ref|YP_001342458.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150838547|gb|ABR72523.1| putative cold-shock DNA-binding domain protein [Marinomonas sp. MWYL1] Length = 69 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 8/73 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++K++N KG+GFIT + G DVF+H SA+ ++G L EGQ V + Q Sbjct: 4 VVTGTVKFFNETKGFGFIT----QDQGPDVFVHFSAINTSGFKTLAEGQKVEFQVAQ--- 56 Query: 62 NGKYSAENLKLVP 74 GK E + P Sbjct: 57 -GKKGPEAQNVTP 68 >gi|33596617|ref|NP_884260.1| cold shock-like protein [Bordetella parapertussis 12822] gi|33601232|ref|NP_888792.1| cold shock-like protein [Bordetella bronchiseptica RB50] gi|33573318|emb|CAE37301.1| cold shock-like protein [Bordetella parapertussis] gi|33575667|emb|CAE32745.1| cold shock-like protein [Bordetella bronchiseptica RB50] Length = 81 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW+N +KGYGFITPE G D+F H S + + G +L E Q V++ Sbjct: 15 METGVVKWFNAEKGYGFITPEA---GGKDLFAHFSEIQANGFKSLEENQRVSF 64 >gi|107028274|ref|YP_625369.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia AU 1054] gi|116686267|ref|YP_839514.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia HI2424] gi|170734893|ref|YP_001774007.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|105897438|gb|ABF80396.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia AU 1054] gi|116651982|gb|ABK12621.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia HI2424] gi|169820931|gb|ACA95512.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia MC0-3] Length = 67 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFITP+ + GDD+F H S + + G L E Q V+++ Q Sbjct: 4 GIVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRADGFKTLAENQKVSFETKQ 54 >gi|111022638|ref|YP_705610.1| cold shock protein [Rhodococcus jostii RHA1] gi|110822168|gb|ABG97452.1| cold shock protein [Rhodococcus jostii RHA1] Length = 67 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI PE + DVF+H S + S G L E Q V+++ Q + Sbjct: 3 EGIVKWFNSEKGFGFIAPE---DGSADVFVHYSEIQSGGFRTLEENQRVSFEIGQGN 56 >gi|257469672|ref|ZP_05633764.1| cold shock protein [Fusobacterium ulcerans ATCC 49185] gi|317063905|ref|ZP_07928390.1| cold shock protein [Fusobacterium ulcerans ATCC 49185] gi|313689581|gb|EFS26416.1| cold shock protein [Fusobacterium ulcerans ATCC 49185] Length = 65 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N DKG+GFIT E G +VF H S + G L E + V Y+ Q Sbjct: 2 KGTVKWFNQDKGFGFITG----EDGKEVFAHYSQIQKDGFKTLAENEEVVYEVTQ 52 >gi|224826638|ref|ZP_03699739.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] gi|224601239|gb|EEG07421.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] Length = 67 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G++KW+N KG+GFI+P+ G+D+F H S + + G +L EGQ V+Y Sbjct: 1 METGTVKWFNDAKGFGFISPDA---GGEDLFAHFSEIRADGFKSLQEGQKVSY 50 >gi|125602073|gb|EAZ41398.1| hypothetical protein OsJ_25919 [Oryza sativa Japonica Group] Length = 91 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 38/51 (74%), Gaps = 3/51 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW++ KG+GFITP+ + G+D+F+H+S++ S G +L +G +V + Sbjct: 7 KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEF 54 >gi|94311826|ref|YP_585036.1| cold-shock DNA-binding protein family protein [Cupriavidus metallidurans CH34] gi|93355678|gb|ABF09767.1| DNA-binding transcriptional repressor [Cupriavidus metallidurans CH34] Length = 69 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI P+ E ++F H SA+ +G L EGQ V ++ VQ Sbjct: 4 GIVKWFNDAKGFGFIKPDDGEE---ELFAHFSAIQMSGFKTLKEGQRVVFEIVQ 54 >gi|238920340|ref|YP_002933855.1| hypothetical protein NT01EI_2450 [Edwardsiella ictaluri 93-146] gi|269139515|ref|YP_003296216.1| old-shock domain family protein [Edwardsiella tarda EIB202] gi|238869909|gb|ACR69620.1| conserved domain protein [Edwardsiella ictaluri 93-146] gi|267985176|gb|ACY85005.1| old-shock domain family protein [Edwardsiella tarda EIB202] gi|304559404|gb|ADM42068.1| putative cold shock protein CspE2 [Edwardsiella tarda FL6-60] Length = 69 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + G DVF+H SA+ G L EGQ V Y +Q+ G Sbjct: 6 GQVKWFNESKGFGFIEQH---DGGKDVFVHFSAITGDGFKTLAEGQRVEYT-IQDSPRGP 61 Query: 65 YSAENLKL 72 +A + L Sbjct: 62 AAANVVAL 69 >gi|167755599|ref|ZP_02427726.1| hypothetical protein CLORAM_01113 [Clostridium ramosum DSM 1402] gi|237734348|ref|ZP_04564829.1| cold shock protein cspC [Mollicutes bacterium D7] gi|167704538|gb|EDS19117.1| hypothetical protein CLORAM_01113 [Clostridium ramosum DSM 1402] gi|229382578|gb|EEO32669.1| cold shock protein cspC [Coprobacillus sp. D7] Length = 65 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +KW+N +KG+GFI G DVF+H S + G L EG+LV ++ Q+D Sbjct: 2 QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQITQDGYKTLNEGELVEFELYQSD 54 >gi|116748179|ref|YP_844866.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697243|gb|ABK16431.1| cold-shock DNA-binding protein family [Syntrophobacter fumaroxidans MPOB] Length = 67 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KGYGFI T+ DVF+H SA+ + G +L+EG+ V+++ V+ G Sbjct: 4 GRVKWFNDKKGYGFI----ETKDQGDVFVHHSAILAEGFRSLSEGEKVSFE-VERGPKGP 58 Query: 65 YSAENLKLVP 74 A +K +P Sbjct: 59 -QAVRVKKIP 67 >gi|307298799|ref|ZP_07578601.1| cold-shock DNA-binding domain protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915224|gb|EFN45609.1| cold-shock DNA-binding domain protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 66 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 5/64 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFIT + G DVF+H SA+ G L EGQ V ++ V++ G Sbjct: 3 GTVKWFNGTKGYGFITK----DDGGDVFVHFSAIEMDGFKTLDEGQRVEFE-VEDGPKGP 57 Query: 65 YSAE 68 +A+ Sbjct: 58 QAAK 61 >gi|307947474|ref|ZP_07662807.1| cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4] gi|307769292|gb|EFO28520.1| cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4] Length = 70 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+IK++N D+G+GFITPE G DVF+H +A AG+ EG +++ ++D Sbjct: 1 MRETGTIKFFNHDRGFGFITPE---SGGKDVFVHITAFEQAGMPAPEEGAKISF-VAEDD 56 Query: 61 ANGK 64 G+ Sbjct: 57 RRGR 60 >gi|190571462|ref|YP_001975820.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018865|ref|ZP_03334673.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357734|emb|CAQ55185.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995816|gb|EEB56456.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 83 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 16/81 (19%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----------NLTEGQLVTY 54 G+IKW+N +KGYGFI PEG G+DVF+H S + +G+ +G+ V+Y Sbjct: 4 GNIKWFNVEKGYGFIKPEG---KGEDVFVHVSTLERSGIRPDELRGEDKKRGMKGERVSY 60 Query: 55 DYVQ---NDANGKYSAENLKL 72 + + + K SA NL+L Sbjct: 61 ELKEERGRNGEDKKSAINLRL 81 >gi|146308090|ref|YP_001188555.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina ymp] gi|145576291|gb|ABP85823.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp] Length = 69 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI ESG DVF+H A+ G L EGQ V + Q Sbjct: 7 GTVKWFNDSKGYGFI----QRESGPDVFVHYRAIRGEGHRTLIEGQKVEFGVTQ 56 >gi|237809065|ref|YP_002893505.1| cold-shock DNA-binding domain-containing protein [Tolumonas auensis DSM 9187] gi|237501326|gb|ACQ93919.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM 9187] Length = 72 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ E GDD+F H S + G L GQ V ++ VQ G Sbjct: 4 GTVKWFNNAKGFGFICPD---EGGDDIFAHYSTIDMNGYKTLKAGQPVEFE-VQAGPKGS 59 Query: 65 YSAENLKLVPKSSN 78 ++ +VP +S Sbjct: 60 HAT---SIVPTASQ 70 >gi|319790475|ref|YP_004152108.1| cold-shock DNA-binding domain protein [Thermovibrio ammonificans HB-1] gi|317114977|gb|ADU97467.1| cold-shock DNA-binding domain protein [Thermovibrio ammonificans HB-1] Length = 68 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW++ KGYGFIT ++G DVF+H + + G L EG+ V+++ +++D Sbjct: 6 GTVKWFDSKKGYGFITA----DNGQDVFVHYTGINGEGFRTLEEGERVSFNVMESD 57 >gi|226355888|ref|YP_002785628.1| cold-shock DNA-binding domain-containing protein [Deinococcus deserti VCD115] gi|226317878|gb|ACO45874.1| putative Cold-shock DNA-binding domain protein [Deinococcus deserti VCD115] Length = 94 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI G+ DVF+H SA+ S G L EG V ++ N Sbjct: 3 QGRVKWFNVEKGYGFIEHPGNP----DVFVHYSAIQSGGFRKLNEGDEVEFEVESGQGNK 58 Query: 64 KYSAENL 70 A+N+ Sbjct: 59 GPQAKNV 65 >gi|49082348|gb|AAT50574.1| PA1159 [synthetic construct] Length = 70 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI +SG DVF+H A+ G +L EGQ V + +Q Sbjct: 7 GTVKWFNDAKGYGFI----QRDSGPDVFVHYRAIRGEGHRSLVEGQKVEFSVIQ 56 >gi|85711368|ref|ZP_01042427.1| Cold shock protein [Idiomarina baltica OS145] gi|85694869|gb|EAQ32808.1| Cold shock protein [Idiomarina baltica OS145] Length = 69 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI +G G DVF H SA+ G L EGQ V++ Q Sbjct: 7 GTVKWFNEAKGFGFIEQQG----GADVFAHFSAITGDGFKTLNEGQRVSFAITQ 56 >gi|47567592|ref|ZP_00238303.1| hypothetical protein BCE_G9241_1119 [Bacillus cereus G9241] gi|52144195|ref|YP_082633.1| cold shock protein [Bacillus cereus E33L] gi|206968178|ref|ZP_03229134.1| cold shock protein CspA [Bacillus cereus AH1134] gi|206976513|ref|ZP_03237419.1| cold shock protein CspA [Bacillus cereus H3081.97] gi|217958711|ref|YP_002337259.1| cold shock protein CspA [Bacillus cereus AH187] gi|218235518|ref|YP_002365918.1| cold shock protein CspA [Bacillus cereus B4264] gi|218896171|ref|YP_002444582.1| cold shock protein CspA [Bacillus cereus G9842] gi|222094856|ref|YP_002528916.1| cold shock protein [Bacillus cereus Q1] gi|225863086|ref|YP_002748464.1| cold shock protein CspA [Bacillus cereus 03BB102] gi|228899812|ref|ZP_04064058.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222] gi|228951597|ref|ZP_04113701.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228964179|ref|ZP_04125302.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|229068787|ref|ZP_04202083.1| Cold shock-like protein cspB [Bacillus cereus F65185] gi|229078421|ref|ZP_04210982.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2] gi|229108691|ref|ZP_04238301.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15] gi|229137920|ref|ZP_04266519.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26] gi|229154797|ref|ZP_04282912.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342] gi|229177647|ref|ZP_04305024.1| Cold shock-like protein cspB [Bacillus cereus 172560W] gi|229189322|ref|ZP_04316342.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876] gi|47555787|gb|EAL14127.1| unknown [Bacillus cereus G9241] gi|51977664|gb|AAU19214.1| cold shock protein [Bacillus cereus E33L] gi|206737098|gb|EDZ54245.1| cold shock protein CspA [Bacillus cereus AH1134] gi|206745196|gb|EDZ56597.1| cold shock protein CspA [Bacillus cereus H3081.97] gi|209972080|gb|ACJ03551.1| cold shock protein [Bacillus thuringiensis serovar kurstaki] gi|209972086|gb|ACJ03554.1| cold shock protein [Bacillus thuringiensis serovar israelensis] gi|209972090|gb|ACJ03556.1| cold shock protein [Bacillus thuringiensis serovar alesti] gi|209972094|gb|ACJ03558.1| cold shock protein [Bacillus mycoides] gi|210077341|gb|ACJ06957.1| cold shock protein [Bacillus thuringiensis serovar asturiensis] gi|217067961|gb|ACJ82211.1| cold shock protein CspA [Bacillus cereus AH187] gi|218163475|gb|ACK63467.1| cold shock protein CspA [Bacillus cereus B4264] gi|218545113|gb|ACK97507.1| cold shock protein CspA [Bacillus cereus G9842] gi|221238914|gb|ACM11624.1| cold shock protein [Bacillus cereus Q1] gi|225786180|gb|ACO26397.1| cold shock protein CspA [Bacillus cereus 03BB102] gi|228594116|gb|EEK51915.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876] gi|228605837|gb|EEK63281.1| Cold shock-like protein cspB [Bacillus cereus 172560W] gi|228628745|gb|EEK85457.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342] gi|228645577|gb|EEL01810.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26] gi|228674721|gb|EEL29955.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15] gi|228704843|gb|EEL57268.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2] gi|228714295|gb|EEL66174.1| Cold shock-like protein cspB [Bacillus cereus F65185] gi|228795529|gb|EEM43013.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228808058|gb|EEM54573.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228859831|gb|EEN04245.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222] Length = 67 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ D Sbjct: 1 MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFEI--ED 54 Query: 61 ANGKYSAENL 70 N A+N+ Sbjct: 55 GNRGPQAKNV 64 >gi|161520712|ref|YP_001584139.1| cold-shock DNA-binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189353104|ref|YP_001948731.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|221196347|ref|ZP_03569394.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans CGD2M] gi|221203021|ref|ZP_03576040.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans CGD2] gi|221209974|ref|ZP_03582955.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans CGD1] gi|160344762|gb|ABX17847.1| cold-shock DNA-binding domain protein [Burkholderia multivorans ATCC 17616] gi|189337126|dbj|BAG46195.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|221170662|gb|EEE03128.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans CGD1] gi|221176955|gb|EEE09383.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans CGD2] gi|221182901|gb|EEE15301.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans CGD2M] Length = 67 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI+P+ GDD+F H S + G LT+ Q V+Y+ Sbjct: 4 GTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLTDNQKVSYE 51 >gi|288941930|ref|YP_003444170.1| cold-shock DNA-binding domain-containing protein [Allochromatium vinosum DSM 180] gi|288897302|gb|ADC63138.1| cold-shock DNA-binding domain protein [Allochromatium vinosum DSM 180] Length = 68 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KGYGF+ PEG E DVF+H S++ G L EGQ V ++ Sbjct: 4 GIVKWFNNAKGYGFVQPEGREE---DVFVHFSSIDMDGYKTLREGQKVEFE 51 >gi|91775541|ref|YP_545297.1| cold-shock DNA-binding protein family protein [Methylobacillus flagellatus KT] gi|91709528|gb|ABE49456.1| cold-shock DNA-binding protein family [Methylobacillus flagellatus KT] Length = 68 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 6/68 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ E G D+F H SA+ + G + +L E Q V++D V + G Sbjct: 4 GIVKWFNDSKGFGFITPD---EGGSDLFAHFSAIVNEGGYKSLAENQRVSFD-VTDGPKG 59 Query: 64 KYSAENLK 71 K A N+K Sbjct: 60 K-QASNIK 66 >gi|307253880|ref|ZP_07535732.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260575|ref|ZP_07542267.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306863084|gb|EFM95026.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306869652|gb|EFN01437.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 83 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ + G D+F+H S + + L EG V ++ VQ+ G Sbjct: 20 GIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFE-VQDSERGP 75 Query: 65 YSAENLKLV 73 SA N+K + Sbjct: 76 -SAVNVKTL 83 >gi|169347342|ref|ZP_02866280.1| hypothetical protein CLOSPI_00057 [Clostridium spiroforme DSM 1552] gi|169293959|gb|EDS76092.1| hypothetical protein CLOSPI_00057 [Clostridium spiroforme DSM 1552] Length = 65 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +KW+N +KG+GFI G DVF+H S + G L EG+LV +D Q++ Sbjct: 2 QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQIEQDGYKTLNEGELVEFDLYQSE 54 >gi|332162229|ref|YP_004298806.1| cold shock-like protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606292|emb|CBY27790.1| cold shock protein CspD [Yersinia enterocolitica subsp. palearctica Y11] gi|325666459|gb|ADZ43103.1| cold shock-like protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860565|emb|CBX70864.1| cold shock-like protein cspD [Yersinia enterocolitica W22703] Length = 85 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V + Sbjct: 4 GTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNF 50 >gi|95928508|ref|ZP_01311255.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] gi|95135298|gb|EAT16950.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] Length = 66 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFI +G G DVF+H SA+ G +L EG V ++ + + G Sbjct: 3 QGSVKWFNDAKGFGFIEQDG----GPDVFVHFSAIQGDGFKSLAEGDRVEFE-ITDGQKG 57 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 58 PQAANVIKL 66 >gi|293609525|ref|ZP_06691827.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827977|gb|EFF86340.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325122795|gb|ADY82318.1| cold shock-like protein [Acinetobacter calcoaceticus PHEA-2] Length = 69 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI ++G DVF H +A +G L EGQ VT+ Q G+ Sbjct: 7 GTVKWFNETKGFGFI----QQDNGPDVFAHFKEIAGSGFKTLHEGQRVTFTVTQ----GQ 58 Query: 65 YSAENLKLVPK 75 + ++P+ Sbjct: 59 KGPNAVNIIPQ 69 >gi|254491849|ref|ZP_05105028.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga thiooxidans DMS010] gi|224463327|gb|EEF79597.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga thiooxydans DMS010] Length = 69 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI SG DVF H SA+ S+G L EGQ V + Sbjct: 7 GTVKWFNEAKGFGFI----EQASGPDVFAHFSAIVSSGFKTLMEGQKVEF 52 >gi|269103590|ref|ZP_06156287.1| cold shock protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163488|gb|EEZ41984.1| cold shock protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 68 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI S G DVF+H SA+ S G L EGQ V + V + G Sbjct: 6 GTVKWFNDEKGFGFI----SGVDGKDVFVHYSAIQSQGRRTLREGQSVEF-IVTDGQKGP 60 Query: 65 YSAENLKL 72 ++E + L Sbjct: 61 QASEVVAL 68 >gi|260913997|ref|ZP_05920471.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260632084|gb|EEX50261.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 69 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKG+GFITP + G D+F+H S + L EG V Y VQ+ G Sbjct: 6 GTVKWFNSDKGFGFITP---ADGGKDLFVHFSGIIGTSYRTLNEGDRVQYS-VQDSQRGP 61 Query: 65 YSAENLKLV 73 SA +++++ Sbjct: 62 -SAIDVQVI 69 >gi|77917817|ref|YP_355632.1| cold shock protein [Pelobacter carbinolicus DSM 2380] gi|77543900|gb|ABA87462.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus DSM 2380] Length = 66 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KGYGFIT + G DVF+H SA+ G +L EG+ V+++ Q Sbjct: 3 QGTVKWFNDAKGYGFIT----QDDGPDVFVHYSAIQVDGYKSLNEGERVSFEVSQ 53 >gi|88800616|ref|ZP_01116177.1| cold-shock DNA-binding domain family protein [Reinekea sp. MED297] gi|88776671|gb|EAR07885.1| cold-shock DNA-binding domain family protein [Reinekea sp. MED297] Length = 68 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI ++G DVF H SA+ +G L EGQ V + Q + Sbjct: 6 GTVKWFNEAKGFGFI----EQQNGPDVFAHFSAITGSGFKTLAEGQKVEFTVTQGQKGPQ 61 Query: 65 YSAENL 70 AEN+ Sbjct: 62 --AENI 65 >gi|116511520|ref|YP_808736.1| cold-shock DNA-binding protein family protein [Lactococcus lactis subsp. cremoris SK11] gi|125624636|ref|YP_001033119.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris MG1363] gi|116107174|gb|ABJ72314.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp. cremoris SK11] gi|124493444|emb|CAL98418.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris MG1363] gi|300071427|gb|ADJ60827.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris NZ9000] Length = 66 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKGYGFI TE DVF + ++ G EGQ VT+D V A G+ Sbjct: 4 GTVKWFNMDKGYGFII----TEDMQDVFAYLLSIQGNGFKKYNEGQKVTFD-VTMTARGR 58 Query: 65 YSA 67 Y++ Sbjct: 59 YAS 61 >gi|291513784|emb|CBK62994.1| cold-shock DNA-binding protein family [Alistipes shahii WAL 8301] Length = 66 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW++ KGYGFIT E+G ++F+H S +A G +L EGQ V ++ Sbjct: 3 GKVKWFDGKKGYGFITA----ENGKEIFVHFSGIAKDGFKSLNEGQAVEFE 49 >gi|212709693|ref|ZP_03317821.1| hypothetical protein PROVALCAL_00741 [Providencia alcalifaciens DSM 30120] gi|212687504|gb|EEB47032.1| hypothetical protein PROVALCAL_00741 [Providencia alcalifaciens DSM 30120] Length = 76 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 ++ G++KW+N KG+GFI P T+ GDDVF H S + G L GQ V Y Sbjct: 1 MNTGTVKWFNNAKGFGFICP---TDGGDDVFAHYSTIQMDGYRTLKAGQKVNY 50 >gi|119963512|ref|YP_948311.1| cold shock protein [Arthrobacter aurescens TC1] gi|119950371|gb|ABM09282.1| putative cold shock protein [Arthrobacter aurescens TC1] Length = 95 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP+ ++ DVF+H S + + G L E Q V ++ Q Sbjct: 32 GTVKWFNAEKGFGFITPD---DADGDVFVHYSEIQTGGFKTLDENQRVQFEIGQ 82 >gi|118589799|ref|ZP_01547204.1| putative cold shock-like transcription regulator protein [Stappia aggregata IAM 12614] gi|118437885|gb|EAV44521.1| putative cold shock-like transcription regulator protein [Stappia aggregata IAM 12614] Length = 70 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 5/74 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+IK++N D+G+GFITPE ++ DVF+H +A AG+ EG +++ ++D Sbjct: 1 MRENGTIKFFNHDRGFGFITPENGSK---DVFVHITAFEQAGIGTPVEGAKISF-VAEDD 56 Query: 61 ANGK-YSAENLKLV 73 G+ A L+L+ Sbjct: 57 RRGRGKQAAQLELL 70 >gi|32034585|ref|ZP_00134741.1| COG1278: Cold shock proteins [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207606|ref|YP_001052831.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae L20] gi|165975574|ref|YP_001651167.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149388|ref|YP_001967913.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249822|ref|ZP_07336026.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251942|ref|ZP_07338113.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307244926|ref|ZP_07527023.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247101|ref|ZP_07529153.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249322|ref|ZP_07531316.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251645|ref|ZP_07533550.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256143|ref|ZP_07537930.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258334|ref|ZP_07540075.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262705|ref|ZP_07544333.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096398|gb|ABN73226.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875675|gb|ABY68723.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914519|gb|ACE60771.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649372|gb|EFL79557.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651389|gb|EFL81541.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854091|gb|EFM86299.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856350|gb|EFM88501.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858616|gb|EFM90678.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860842|gb|EFM92850.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865324|gb|EFM97220.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867518|gb|EFM99365.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871960|gb|EFN03676.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 69 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ + G D+F+H S + + L EG V ++ VQ+ G Sbjct: 6 GIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFE-VQDSERGP 61 Query: 65 YSAENLKLV 73 SA N+K + Sbjct: 62 -SAVNVKTL 69 >gi|17547875|ref|NP_521277.1| cold shock-like transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430181|emb|CAD16944.1| probable cold shock-like cspc transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 67 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G++KW+N KG+GFITP+ G+D+F H S + +G L EG+ V Y Sbjct: 1 METGTVKWFNESKGFGFITPDA---GGNDLFAHFSEIQGSGFKTLQEGEKVRY 50 >gi|260583587|ref|ZP_05851335.1| cold shock protein [Granulicatella elegans ATCC 700633] gi|260158213|gb|EEW93281.1| cold shock protein [Granulicatella elegans ATCC 700633] Length = 70 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW++ +KGYGFI+ T++ +D+F+H + + S G L EGQ V ++ Q Sbjct: 3 KGIVKWFSNEKGYGFISV---TDTDEDIFVHFTGIISEGFKTLKEGQRVEFEIAQ 54 >gi|255073219|ref|XP_002500284.1| cold-shock DNA binding protein [Micromonas sp. RCC299] gi|226515546|gb|ACO61542.1| cold-shock DNA binding protein [Micromonas sp. RCC299] Length = 122 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ + D++F+H++A+ S G +L E + V + ++ +G+ Sbjct: 7 GKVKWFNTQKGFGFITPD---DGSDEIFVHQTAIHSEGFRSLREDEPVEF-VIEKSDDGR 62 Query: 65 YSA 67 A Sbjct: 63 TKA 65 >gi|270007992|gb|EFA04440.1| hypothetical protein TcasGA2_TC014742 [Tribolium castaneum] Length = 192 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + RG KW+N KG+GFITP+ + G DVF+H+S + +G +L + + V ++ +D Sbjct: 36 LRRGKCKWFNVAKGWGFITPD---DGGQDVFVHQSVIQMSGFRSLGDDEEVEFECQVSD 91 >gi|224063128|ref|XP_002301004.1| predicted protein [Populus trichocarpa] gi|222842730|gb|EEE80277.1| predicted protein [Populus trichocarpa] Length = 184 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW++ KG+GFI P+ + G+D+F+H++++ S G L++GQ V + Sbjct: 9 GTVKWFSAQKGFGFIAPD---DGGEDLFVHQTSIQSDGFRTLSDGQPVEF 55 >gi|90962044|ref|YP_535960.1| cold shock protein [Lactobacillus salivarius UCC118] gi|227891063|ref|ZP_04008868.1| cold shock protein [Lactobacillus salivarius ATCC 11741] gi|301300924|ref|ZP_07207096.1| cold shock-like protein CspE [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821238|gb|ABD99877.1| Cold shock protein [Lactobacillus salivarius UCC118] gi|227867152|gb|EEJ74573.1| cold shock protein [Lactobacillus salivarius ATCC 11741] gi|300851523|gb|EFK79235.1| cold shock-like protein CspE [Lactobacillus salivarius ACS-116-V-Col5a] Length = 69 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ +N +KG+GFITP+ +S DDVF+H SA+ + G L EGQ V + ++ + Sbjct: 4 GTVHKFNREKGFGFITPD---DSKDDVFVHFSAIQTEGFKTLQEGQRVGFVTIEGKRGPQ 60 Query: 65 YSAENLKLV 73 A N++L+ Sbjct: 61 --AANVELI 67 >gi|224084856|ref|XP_002307424.1| predicted protein [Populus trichocarpa] gi|222856873|gb|EEE94420.1| predicted protein [Populus trichocarpa] Length = 64 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 44/66 (66%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KG+GFI P+ + G+D+F+H++++ S G L++GQ V + V + +G+ Sbjct: 1 GTVKWFSAQKGFGFIAPD---DGGEDLFVHQTSIQSDGFRTLSDGQPVEF-SVDSGEDGR 56 Query: 65 YSAENL 70 A ++ Sbjct: 57 TKAVDV 62 >gi|16129516|ref|NP_416075.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. MG1655] gi|89108399|ref|AP_002179.1| cold shock protein [Escherichia coli str. K-12 substr. W3110] gi|170020092|ref|YP_001725046.1| cold-shock DNA-binding domain-containing protein [Escherichia coli ATCC 8739] gi|170081225|ref|YP_001730545.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|193066912|ref|ZP_03047881.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194436474|ref|ZP_03068575.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|218554119|ref|YP_002387032.1| cold shock protein; Qin prophage [Escherichia coli IAI1] gi|218699873|ref|YP_002407502.1| cold shock protein; Qin prophage [Escherichia coli IAI39] gi|218705059|ref|YP_002412578.1| cold shock protein; Qin prophage [Escherichia coli UMN026] gi|238900777|ref|YP_002926573.1| Qin prophage; cold shock protein [Escherichia coli BW2952] gi|293405060|ref|ZP_06649052.1| cold shock-like protein cspB [Escherichia coli FVEC1412] gi|298380705|ref|ZP_06990304.1| cold shock-like protein cspB [Escherichia coli FVEC1302] gi|300899666|ref|ZP_07117897.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300903929|ref|ZP_07121824.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300919925|ref|ZP_07136387.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300938348|ref|ZP_07153102.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|301025117|ref|ZP_07188711.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|301306487|ref|ZP_07212553.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|301326428|ref|ZP_07219780.1| transcriptional repressor activity CueR [Escherichia coli MS 78-1] gi|301647720|ref|ZP_07247513.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|307138212|ref|ZP_07497568.1| cold shock protein; Qin prophage [Escherichia coli H736] gi|307310877|ref|ZP_07590523.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|312969569|ref|ZP_07783752.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|331642145|ref|ZP_08343280.1| conserved domain protein [Escherichia coli H736] gi|331652935|ref|ZP_08353940.1| conserved domain protein [Escherichia coli M718] gi|544108|sp|P36995|CSPB_ECOLI RecName: Full=Cold shock-like protein CspB; Short=CSP-B gi|479003|gb|AAA23618.1| cold-shock protein [Escherichia coli] gi|1742552|dbj|BAA15256.1| cold shock protein [Escherichia coli str. K12 substr. W3110] gi|1787839|gb|AAC74630.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. MG1655] gi|2226341|gb|AAB61739.1| CspB [Escherichia coli str. K-12 substr. W3110] gi|169755020|gb|ACA77719.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|169889060|gb|ACB02767.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|192959502|gb|EDV89936.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194424506|gb|EDX40492.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|218360887|emb|CAQ98457.1| cold shock protein; Qin prophage [Escherichia coli IAI1] gi|218369859|emb|CAR17633.1| cold shock protein; Qin prophage [Escherichia coli IAI39] gi|218432156|emb|CAR13044.1| cold shock protein; Qin prophage [Escherichia coli UMN026] gi|238863368|gb|ACR65366.1| Qin prophage; cold shock protein [Escherichia coli BW2952] gi|260449320|gb|ACX39742.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|284921462|emb|CBG34531.1| cold shock-like protein [Escherichia coli 042] gi|291427268|gb|EFF00295.1| cold shock-like protein cspB [Escherichia coli FVEC1412] gi|298278147|gb|EFI19661.1| cold shock-like protein cspB [Escherichia coli FVEC1302] gi|300356791|gb|EFJ72661.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300396226|gb|EFJ79764.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|300404089|gb|EFJ87627.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300413046|gb|EFJ96356.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300456684|gb|EFK20177.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|300838293|gb|EFK66053.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|300846844|gb|EFK74604.1| transcriptional repressor activity CueR [Escherichia coli MS 78-1] gi|301074155|gb|EFK88961.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|306909055|gb|EFN39551.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|310337854|gb|EFQ02943.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|312946160|gb|ADR26987.1| Qin prophage; cold shock protein [Escherichia coli O83:H1 str. NRG 857C] gi|315060857|gb|ADT75184.1| Qin prophage; cold shock protein [Escherichia coli W] gi|315136198|dbj|BAJ43357.1| cold shock-like protein cspB [Escherichia coli DH1] gi|315253261|gb|EFU33229.1| transcriptional repressor activity CueR [Escherichia coli MS 85-1] gi|320197745|gb|EFW72353.1| Cold shock protein CspB [Escherichia coli EC4100B] gi|320643977|gb|EFX13064.1| Qin prophage; cold shock protein [Escherichia coli O157:H- str. 493-89] gi|320649406|gb|EFX17948.1| Qin prophage; cold shock protein [Escherichia coli O157:H- str. H 2687] gi|320660405|gb|EFX27873.1| Qin prophage; cold shock protein [Escherichia coli O55:H7 str. USDA 5905] gi|323169849|gb|EFZ55505.1| cold shock-like protein cspG [Escherichia coli LT-68] gi|323185905|gb|EFZ71262.1| cold shock-like protein cspG [Escherichia coli 1357] gi|323378572|gb|ADX50840.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323942036|gb|EGB38214.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323947934|gb|EGB43929.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323973801|gb|EGB68975.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|331038943|gb|EGI11163.1| conserved domain protein [Escherichia coli H736] gi|331049033|gb|EGI21105.1| conserved domain protein [Escherichia coli M718] gi|332343266|gb|AEE56600.1| cold shock-like protein CspG [Escherichia coli UMNK88] Length = 71 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI+P + DVF+H SA+ + L EGQ VT+ +++ A G Sbjct: 7 GLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFS-IESGAKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|183396658|dbj|BAG28257.1| hypothetical protein [Desulfotignum balticum] Length = 67 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI E + G DVF+H S + + G +L EG V++D Sbjct: 4 GTVKWFNDAKGFGFIEQE---DGGKDVFVHHSGINAMGFKSLNEGDRVSFD 51 >gi|325003077|ref|ZP_08124189.1| cold shock protein CspA [Pseudonocardia sp. P1] Length = 309 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++ WY P KGYGF +P+ + G D+F+H SA+ + G+ +TEGQ V + Sbjct: 81 GTVNWYEPGKGYGFASPD---DGGADIFVHSSAIVTGGV--VTEGQRVAF 125 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 4/60 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60 + +G+++W++ ++G+GF+ PE + DVF+H S V G L EGQ V ++ +ND Sbjct: 1 MQQGTVRWFDAERGFGFLAPE---DGSPDVFVHASEIVGGGGATVLREGQAVEFEIGEND 57 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 + WY+ DKG+GFI P+ E DVF+H A+A GL L EG V ++ D + Sbjct: 162 VAWYDEDKGFGFINPDSGDE---DVFVHARALAE-GLTWLMEGDRVAFEVASGDKGPQAR 217 Query: 67 AENLKLVPKSS 77 +L P+++ Sbjct: 218 DVHLVREPRAA 228 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G + Y+ D+G+GFITP+ GDD+F H S V G L +G V + Q+D Sbjct: 248 GVVARYDDDRGFGFITPDA---GGDDLFAHVSVV--MGSEPLQKGDRVRFAVRQSD 298 >gi|317493065|ref|ZP_07951489.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919187|gb|EFV40522.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 70 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFITP+ ++ D+F+H SA+ S L EGQ V + V+N G Sbjct: 7 GLVKWFDAGKGFGFITPDNGSK---DIFVHFSAIQSTAFKTLDEGQRVEF-TVENGQKGP 62 Query: 65 YSAENLKL 72 +A + L Sbjct: 63 SAANVVAL 70 >gi|91083993|ref|XP_975245.1| PREDICTED: similar to AGAP006591-PA [Tribolium castaneum] Length = 195 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + RG KW+N KG+GFITP+ + G DVF+H+S + +G +L + + V ++ +D Sbjct: 39 LRRGKCKWFNVAKGWGFITPD---DGGQDVFVHQSVIQMSGFRSLGDDEEVEFECQVSD 94 >gi|73539008|ref|YP_299375.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|116695865|ref|YP_841441.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] gi|300694434|ref|YP_003750407.1| cold shock/stress protein, member of the csp-family [Ralstonia solanacearum PSI07] gi|72122345|gb|AAZ64531.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] gi|113530364|emb|CAJ96711.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] gi|299076471|emb|CBJ35788.1| cold shock/stress protein, member of the Csp-family [Ralstonia solanacearum PSI07] Length = 67 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G++KW+N KG+GFITP+ G+D+F H S + G +L EGQ V Y Sbjct: 1 METGTVKWFNDSKGFGFITPD---AGGNDLFAHFSEIQGNGFKSLQEGQKVRY 50 >gi|329769588|ref|ZP_08260993.1| cold shock protein cspA [Gemella sanguinis M325] gi|328838540|gb|EGF88147.1| cold shock protein cspA [Gemella sanguinis M325] Length = 66 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG DVF+H S++ G L EG V + V+ A Sbjct: 1 MKQGTVKWFNEEKGFGFIAVEGEK----DVFVHFSSIQKEGFKTLKEGDKVEFS-VEEGA 55 Query: 62 NGKYSA 67 G +A Sbjct: 56 RGPQAA 61 >gi|323339484|ref|ZP_08079763.1| cold-shock family protein [Lactobacillus ruminis ATCC 25644] gi|323093098|gb|EFZ35691.1| cold-shock family protein [Lactobacillus ruminis ATCC 25644] Length = 69 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++ +++ KGYGFITP+ E +DVF+H SA+ +G L EGQ V + V+ Sbjct: 3 KGTVHFFDKKKGYGFITPD---EGNEDVFVHFSALVGSGFKTLEEGQRVEFCEVE 54 >gi|300309840|ref|YP_003773932.1| cold-shock transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300072625|gb|ADJ62024.1| cold-shock transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 70 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFITP+ G DVF H + S G +L+E Q V++D Sbjct: 6 GVVKWFNDAKGFGFITPDA---GGADVFAHFQDIQSTGFRSLSENQRVSFD 53 >gi|3850772|emb|CAA76694.1| cold shock protein A [Lactococcus lactis subsp. cremoris MG1363] Length = 66 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKGYGFI TE DVF + ++ G EGQ VT+D V A G+ Sbjct: 4 GTVKWFNMDKGYGFII----TEDMQDVFAYLLSIQGNGFKKYNEGQKVTFD-VTMTARGR 58 Query: 65 YSA 67 Y++ Sbjct: 59 YAS 61 >gi|51597878|ref|YP_072069.1| major cold shock protein Cspa2 [Yersinia pseudotuberculosis IP 32953] gi|186897074|ref|YP_001874186.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|51591160|emb|CAH22825.1| major cold shock protein Cspa2 [Yersinia pseudotuberculosis IP 32953] gi|186700100|gb|ACC90729.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] Length = 70 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFITP + G DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFDAGKGFGFITP---ADGGKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 AAVNVIAL 70 >gi|109897864|ref|YP_661119.1| cold-shock DNA-binding domain-containing protein [Pseudoalteromonas atlantica T6c] gi|332307142|ref|YP_004434993.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|109700145|gb|ABG40065.1| cold-shock DNA-binding protein family [Pseudoalteromonas atlantica T6c] gi|332174471|gb|AEE23725.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 68 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H A+ G L EGQ V + Q + Sbjct: 6 GTVKWFNESKGFGFI----QQENGPDVFAHFRAITGTGFKTLAEGQKVEFTVTQGQKGPQ 61 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 62 --AENIVVL 68 >gi|332526824|ref|ZP_08402924.1| cold-shock DNA-binding protein family protein [Rubrivivax benzoatilyticus JA2] gi|332111225|gb|EGJ11257.1| cold-shock DNA-binding protein family protein [Rubrivivax benzoatilyticus JA2] Length = 69 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFITP+ G D+F H + G L E Q V ++ Q Sbjct: 6 GTVKWFNESKGYGFITPDA---GGKDLFAHFKEIQGTGFKTLAENQRVEFEVTQ 56 >gi|253581950|ref|ZP_04859174.1| cold shock protein CspC [Fusobacterium varium ATCC 27725] gi|251836299|gb|EES64836.1| cold shock protein CspC [Fusobacterium varium ATCC 27725] Length = 65 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N DKG+GFIT E G +VF H S + G L E + V Y+ Q Sbjct: 2 KGTVKWFNQDKGFGFITG----EDGKEVFAHYSQIQKDGFKTLEENEEVIYEVTQ 52 >gi|229591242|ref|YP_002873361.1| putative cold-shock protein [Pseudomonas fluorescens SBW25] gi|229363108|emb|CAY50116.1| putative cold-shock protein [Pseudomonas fluorescens SBW25] Length = 91 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G +E D+F H SA+ G L GQ V+++ +Q Sbjct: 8 GKVKWFNNAKGYGFIIEDGKSE---DLFAHFSAIIMDGYKTLKAGQAVSFEIIQ 58 >gi|255586259|ref|XP_002533782.1| cold shock protein, putative [Ricinus communis] gi|223526283|gb|EEF28595.1| cold shock protein, putative [Ricinus communis] Length = 257 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG + WY+ +KGYGFI P G G DVF+H S++ S G +L G + Y+ + ++A G Sbjct: 111 RGILIWYSNEKGYGFIKPNG---GGVDVFVHSSSLKSNGHIHLGAGMPLEYETIISNA-G 166 Query: 64 KYSAENL 70 K A N+ Sbjct: 167 KLQAINV 173 >gi|239618424|ref|YP_002941746.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF 19.5.1] gi|239507255|gb|ACR80742.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF 19.5.1] Length = 66 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KGYGFIT + G DVF+H SA+ G L EGQ V ++ Sbjct: 3 GTVKWFNSSKGYGFIT----KDEGGDVFVHFSAIEVDGFKTLDEGQRVEFE 49 >gi|186473789|ref|YP_001861131.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184196121|gb|ACC74085.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 67 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G +KW+N KG+GFITP+ + GDD+F H S + G L E Q V+++ Sbjct: 1 METGIVKWFNDSKGFGFITPD---KGGDDLFAHFSEITGEGFKTLAENQKVSFE 51 >gi|251787872|ref|YP_003002593.1| cold-shock DNA-binding domain-containing protein [Dickeya zeae Ech1591] gi|271502353|ref|YP_003335379.1| cold-shock DNA-binding domain-containing protein [Dickeya dadantii Ech586] gi|247536493|gb|ACT05114.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591] gi|270345908|gb|ACZ78673.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586] Length = 70 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFI+P + DVF+H SA+ S L EGQ V + + N G Sbjct: 7 GSVKWFNESKGFGFISP---ADGSKDVFVHFSAIQSDSFKTLYEGQKVEF-VIGNGPKGP 62 Query: 65 YSAENL 70 SAEN+ Sbjct: 63 -SAENV 67 >gi|224078196|ref|XP_002305502.1| predicted protein [Populus trichocarpa] gi|222848466|gb|EEE86013.1| predicted protein [Populus trichocarpa] Length = 207 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 44/66 (66%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFI+P+ + DD+F+H+S++ S G +L +G+ V + ++N +G+ Sbjct: 7 GKVKWFSDQKGFGFISPD---DGSDDLFVHQSSIKSEGYRSLGDGEEVEF-VIENSDDGR 62 Query: 65 YSAENL 70 A ++ Sbjct: 63 TKAVDV 68 >gi|11493820|gb|AAG35657.1|AF204736_1 cold shock protein C [Yersinia enterocolitica] Length = 46 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ Sbjct: 2 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQ 45 >gi|260855295|ref|YP_003229186.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368] gi|257753944|dbj|BAI25446.1| predicted cold shock protein [Escherichia coli O26:H11 str. 11368] gi|323156712|gb|EFZ42850.1| cold shock-like protein cspG [Escherichia coli EPECa14] Length = 71 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI+P + DVF+H SA+ + L EGQ VT+ ++ A G Sbjct: 7 GLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFS-IERGAKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|284989393|ref|YP_003407947.1| cold-shock DNA-binding domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284062638|gb|ADB73576.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus DSM 43160] Length = 131 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+NP+KG+GF+ S E G DVF+H+ A+ S G L GQ V + V Sbjct: 4 GRVKWFNPEKGFGFL----SREDGPDVFVHKDALPS-GTSELKPGQRVEFGIV 51 >gi|226307843|ref|YP_002767803.1| cold shock protein [Rhodococcus erythropolis PR4] gi|229494927|ref|ZP_04388678.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|226186960|dbj|BAH35064.1| probable cold shock protein [Rhodococcus erythropolis PR4] gi|229318151|gb|EEN84021.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 67 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N +KG+GFI PE + DVF+H S + S G L E Q V ++ Q + Sbjct: 3 EGIVKWFNSEKGFGFIAPE---DGSADVFVHYSEIQSGGFRTLEENQRVAFEIGQGN 56 >gi|261344285|ref|ZP_05971929.1| cold-shock DNA-binding domain protein [Providencia rustigianii DSM 4541] gi|282567888|gb|EFB73423.1| cold-shock DNA-binding domain protein [Providencia rustigianii DSM 4541] Length = 71 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 3/58 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +H G +KW++ +GYGFI+P GDD+F+ ++A+ + +L+EGQ V + +N Sbjct: 5 LHMGRVKWFDAKEGYGFISP---CNGGDDIFVTTKSLANKKIKSLSEGQNVEFSVTRN 59 >gi|182678504|ref|YP_001832650.1| cold-shock DNA-binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634387|gb|ACB95161.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 224 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW++ +KG+GF+ S + G DVF+H S + S+G+ +L EGQ VT V Sbjct: 161 GTVKWFDDNKGFGFVQ---SNDGGKDVFVHISILGSSGVQHLAEGQAVTMRVV 210 >gi|257455324|ref|ZP_05620559.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] gi|257447286|gb|EEV22294.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] Length = 70 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI + G DVF H SA+ +G L EGQ V++ Sbjct: 7 GTVKWFNESKGFGFIAQD---NGGQDVFAHYSAIQGSGFKTLKEGQRVSF 53 >gi|88857623|ref|ZP_01132266.1| Cold shock protein [Pseudoalteromonas tunicata D2] gi|88820820|gb|EAR30632.1| Cold shock protein [Pseudoalteromonas tunicata D2] Length = 69 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI E+G DVF H A+ G L EGQ V + Q Sbjct: 7 GTVKWFNESKGFGFI----EQENGPDVFAHFRAITGTGFKTLVEGQKVQFKVTQGQ 58 >gi|225873243|ref|YP_002754702.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] gi|225794371|gb|ACO34461.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] Length = 72 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++G +KW+N KGYGFI + G DVF+H SA+ G +L EG V +D VQ Sbjct: 4 YKGKVKWFNNAKGYGFI----GRDDGPDVFVHYSAIQIDGYKSLKEGDEVEFDIVQ 55 >gi|312138017|ref|YP_004005353.1| cold shock protein [Rhodococcus equi 103S] gi|325675220|ref|ZP_08154905.1| cold shock protein A [Rhodococcus equi ATCC 33707] gi|311887356|emb|CBH46667.1| cold shock protein [Rhodococcus equi 103S] gi|325553926|gb|EGD23603.1| cold shock protein A [Rhodococcus equi ATCC 33707] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI PE + DVF+H S + +G L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGSGFRTLEENQRVEFEVGQ 54 >gi|257463996|ref|ZP_05628381.1| cold-shock domain-contain protein [Fusobacterium sp. D12] gi|317061518|ref|ZP_07926003.1| cold-shock protein [Fusobacterium sp. D12] gi|313687194|gb|EFS24029.1| cold-shock protein [Fusobacterium sp. D12] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFIT E D F+H S +A G L EG+ VT++ V G Sbjct: 3 KGTVKWFNNEKGFGFITGEDMV----DYFVHFSGIAGEGFKTLEEGEAVTFE-VSEGKKG 57 Query: 64 KYSAENLKL 72 + E K+ Sbjct: 58 PMATEVTKV 66 >gi|53720688|ref|YP_109674.1| cold shock-like protein CspD [Burkholderia pseudomallei K96243] gi|53723938|ref|YP_104309.1| cold-shock domain-contain protein [Burkholderia mallei ATCC 23344] gi|67641928|ref|ZP_00440693.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8 horse 4] gi|76811091|ref|YP_334974.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|83720047|ref|YP_443443.1| cold-shock domain-contain protein [Burkholderia thailandensis E264] gi|124383483|ref|YP_001027729.1| cold-shock domain-contain protein [Burkholderia mallei NCTC 10229] gi|126440312|ref|YP_001060602.1| CspE-related protein [Burkholderia pseudomallei 668] gi|126449743|ref|YP_001082701.1| cold-shock domain-contain protein [Burkholderia mallei NCTC 10247] gi|126452091|ref|YP_001067852.1| cold-shock domain-contain protein [Burkholderia pseudomallei 1106a] gi|134283275|ref|ZP_01769976.1| cold-shock domain family protein [Burkholderia pseudomallei 305] gi|167582495|ref|ZP_02375369.1| cold-shock domain family protein [Burkholderia thailandensis TXDOH] gi|167620585|ref|ZP_02389216.1| cold-shock domain family protein [Burkholderia thailandensis Bt4] gi|167721415|ref|ZP_02404651.1| cold-shock domain family protein [Burkholderia pseudomallei DM98] gi|167740382|ref|ZP_02413156.1| cold-shock domain family protein [Burkholderia pseudomallei 14] gi|167817600|ref|ZP_02449280.1| cold-shock domain family protein [Burkholderia pseudomallei 91] gi|167826001|ref|ZP_02457472.1| cold-shock domain family protein [Burkholderia pseudomallei 9] gi|167896076|ref|ZP_02483478.1| cold-shock domain family protein [Burkholderia pseudomallei 7894] gi|167904462|ref|ZP_02491667.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC 13177] gi|167912723|ref|ZP_02499814.1| cold-shock domain family protein [Burkholderia pseudomallei 112] gi|167920683|ref|ZP_02507774.1| cold-shock domain family protein [Burkholderia pseudomallei BCC215] gi|217424876|ref|ZP_03456373.1| cold-shock domain family protein [Burkholderia pseudomallei 576] gi|226198244|ref|ZP_03793815.1| cold-shock domain family protein [Burkholderia pseudomallei Pakistan 9] gi|237813987|ref|YP_002898438.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|242317385|ref|ZP_04816401.1| cold-shock domain family protein [Burkholderia pseudomallei 1106b] gi|254175079|ref|ZP_04881740.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399] gi|254180483|ref|ZP_04887081.1| cold-shock domain family protein [Burkholderia pseudomallei 1655] gi|254190465|ref|ZP_04896973.1| cold-shock domain family protein [Burkholderia pseudomallei Pasteur 52237] gi|254198469|ref|ZP_04904890.1| cold-shock domain family protein [Burkholderia pseudomallei S13] gi|254201381|ref|ZP_04907745.1| cold-shock domain family protein [Burkholderia mallei FMH] gi|254206723|ref|ZP_04913074.1| cold-shock domain family protein [Burkholderia mallei JHU] gi|254258676|ref|ZP_04949730.1| cold-shock domain family protein [Burkholderia pseudomallei 1710a] gi|254300718|ref|ZP_04968163.1| cold-shock domain family protein [Burkholderia pseudomallei 406e] gi|254357313|ref|ZP_04973587.1| cold-shock domain family protein [Burkholderia mallei 2002721280] gi|257137775|ref|ZP_05586037.1| cold-shock DNA-binding domain protein [Burkholderia thailandensis E264] gi|52211102|emb|CAH37090.1| cold shock-like protein CspD [Burkholderia pseudomallei K96243] gi|52427361|gb|AAU47954.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344] gi|76580544|gb|ABA50019.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|83653872|gb|ABC37935.1| cold-shock domain family protein-related protein [Burkholderia thailandensis E264] gi|124291503|gb|ABN00772.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC 10229] gi|126219805|gb|ABN83311.1| CspE-like protein [Burkholderia pseudomallei 668] gi|126225733|gb|ABN89273.1| cold-shock domain family protein [Burkholderia pseudomallei 1106a] gi|126242613|gb|ABO05706.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC 10247] gi|134245470|gb|EBA45563.1| cold-shock domain family protein [Burkholderia pseudomallei 305] gi|147747275|gb|EDK54351.1| cold-shock domain family protein [Burkholderia mallei FMH] gi|147752265|gb|EDK59331.1| cold-shock domain family protein [Burkholderia mallei JHU] gi|148026377|gb|EDK84462.1| cold-shock domain family protein [Burkholderia mallei 2002721280] gi|157810480|gb|EDO87650.1| cold-shock domain family protein [Burkholderia pseudomallei 406e] gi|157938141|gb|EDO93811.1| cold-shock domain family protein [Burkholderia pseudomallei Pasteur 52237] gi|160696124|gb|EDP86094.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399] gi|169655209|gb|EDS87902.1| cold-shock domain family protein [Burkholderia pseudomallei S13] gi|184211022|gb|EDU08065.1| cold-shock domain family protein [Burkholderia pseudomallei 1655] gi|217392332|gb|EEC32357.1| cold-shock domain family protein [Burkholderia pseudomallei 576] gi|225929764|gb|EEH25780.1| cold-shock domain family protein [Burkholderia pseudomallei Pakistan 9] gi|237506828|gb|ACQ99146.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|238522943|gb|EEP86385.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8 horse 4] gi|242140624|gb|EES27026.1| cold-shock domain family protein [Burkholderia pseudomallei 1106b] gi|254217365|gb|EET06749.1| cold-shock domain family protein [Burkholderia pseudomallei 1710a] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITPEG G+D+F H S + G L E Q V ++ Sbjct: 4 GTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRVDGFKTLQENQKVEFE 51 >gi|209972096|gb|ACJ03559.1| cold shock protein [Bacillus weihenstephanensis] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ D Sbjct: 1 MTVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIENDGFKSLEEGQKVSFEI--ED 54 Query: 61 ANGKYSAENL 70 N A+N+ Sbjct: 55 GNRGPQAKNV 64 >gi|218902331|ref|YP_002450165.1| cold shock protein CspA [Bacillus cereus AH820] gi|218538225|gb|ACK90623.1| cold shock protein CspA [Bacillus cereus AH820] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ Sbjct: 1 MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFE 51 >gi|183984791|ref|YP_001853082.1| cold shock protein a, CspA [Mycobacterium marinum M] gi|183178117|gb|ACC43227.1| cold shock protein a, CspA [Mycobacterium marinum M] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFITP+ T+ D+F+H S + +G +L E Q V ++ Q Sbjct: 3 QGTVKWFNGEKGFGFITPDDGTK---DLFVHYSEIQGSGYRSLEENQRVQFEVEQ 54 >gi|111021327|ref|YP_704299.1| cold shock protein A [Rhodococcus jostii RHA1] gi|226363671|ref|YP_002781453.1| cold shock protein [Rhodococcus opacus B4] gi|110820857|gb|ABG96141.1| cold shock protein A [Rhodococcus jostii RHA1] gi|226242160|dbj|BAH52508.1| cold shock protein [Rhodococcus opacus B4] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI PE + DVF+H S + +G L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGSGFRTLEENQRVEFEVGQ 54 >gi|54022330|ref|YP_116572.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54013838|dbj|BAD55208.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 68 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI PE + DVF+H S + +G L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGSGFRTLEENQKVEFEVGQ 54 >gi|119775095|ref|YP_927835.1| cold-shock DNA-binding domain-containing protein [Shewanella amazonensis SB2B] gi|119767595|gb|ABM00166.1| cold-shock DNA-binding protein family [Shewanella amazonensis SB2B] Length = 70 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 H G++KW+N +KG+GF+ S ++ DVF+H A+ + G L EGQ V++ V+ Sbjct: 6 HTGTVKWFNDEKGFGFL----SRDNDSDVFVHYRAINTQGRRTLKEGQKVSFSLVE 57 >gi|30019286|ref|NP_830917.1| cold shock protein [Bacillus cereus ATCC 14579] gi|30261242|ref|NP_843619.1| cold shock protein CspA [Bacillus anthracis str. Ames] gi|47526404|ref|YP_017753.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor'] gi|49184074|ref|YP_027326.1| cold shock protein CspA [Bacillus anthracis str. Sterne] gi|49479225|ref|YP_035367.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318514|ref|ZP_00391473.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012] gi|118476719|ref|YP_893870.1| cold-shock DNA-binding protein family protein [Bacillus thuringiensis str. Al Hakam] gi|167635405|ref|ZP_02393719.1| cold shock protein CspA [Bacillus anthracis str. A0442] gi|167640251|ref|ZP_02398517.1| cold shock protein CspA [Bacillus anthracis str. A0193] gi|170688025|ref|ZP_02879237.1| cold shock protein CspA [Bacillus anthracis str. A0465] gi|170707660|ref|ZP_02898112.1| cold shock protein CspA [Bacillus anthracis str. A0389] gi|190566579|ref|ZP_03019496.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I] gi|196036231|ref|ZP_03103630.1| cold shock protein CspA [Bacillus cereus W] gi|196037508|ref|ZP_03104819.1| cold shock protein CspA [Bacillus cereus NVH0597-99] gi|196044203|ref|ZP_03111439.1| cold shock protein CspA [Bacillus cereus 03BB108] gi|227816020|ref|YP_002816029.1| cold shock protein CspA [Bacillus anthracis str. CDC 684] gi|228913810|ref|ZP_04077435.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926273|ref|ZP_04089347.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932510|ref|ZP_04095391.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944843|ref|ZP_04107206.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090176|ref|ZP_04221425.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42] gi|229120758|ref|ZP_04250001.1| Cold shock-like protein cspB [Bacillus cereus 95/8201] gi|229126542|ref|ZP_04255556.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4] gi|229183437|ref|ZP_04310662.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1] gi|229604794|ref|YP_002865665.1| cold shock protein CspA [Bacillus anthracis str. A0248] gi|254682697|ref|ZP_05146558.1| cold shock protein CspA [Bacillus anthracis str. CNEVA-9066] gi|254725490|ref|ZP_05187272.1| cold shock protein CspA [Bacillus anthracis str. A1055] gi|254734115|ref|ZP_05191828.1| cold shock protein CspA [Bacillus anthracis str. Western North America USA6153] gi|254740241|ref|ZP_05197933.1| cold shock protein CspA [Bacillus anthracis str. Kruger B] gi|254753581|ref|ZP_05205617.1| cold shock protein CspA [Bacillus anthracis str. Vollum] gi|254758678|ref|ZP_05210705.1| cold shock protein CspA [Bacillus anthracis str. Australia 94] gi|301052771|ref|YP_003790982.1| cold shock protein [Bacillus anthracis CI] gi|49035524|sp|Q81GQ6|CSPA_BACCR RecName: Full=Major cold shock protein CspA gi|49035527|sp|Q81TW8|CSPA_BACAN RecName: Full=Major cold shock protein CspA gi|29894829|gb|AAP08118.1| Cold shock protein [Bacillus cereus ATCC 14579] gi|30254856|gb|AAP25105.1| cold shock protein CspA [Bacillus anthracis str. Ames] gi|47501552|gb|AAT30228.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor'] gi|49178001|gb|AAT53377.1| cold shock protein CspA [Bacillus anthracis str. Sterne] gi|49330781|gb|AAT61427.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415944|gb|ABK84363.1| cold-shock DNA-binding protein family [Bacillus thuringiensis str. Al Hakam] gi|167511852|gb|EDR87232.1| cold shock protein CspA [Bacillus anthracis str. A0193] gi|167529233|gb|EDR91986.1| cold shock protein CspA [Bacillus anthracis str. A0442] gi|170127435|gb|EDS96310.1| cold shock protein CspA [Bacillus anthracis str. A0389] gi|170667920|gb|EDT18671.1| cold shock protein CspA [Bacillus anthracis str. A0465] gi|190562131|gb|EDV16099.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I] gi|195991206|gb|EDX55175.1| cold shock protein CspA [Bacillus cereus W] gi|196024842|gb|EDX63513.1| cold shock protein CspA [Bacillus cereus 03BB108] gi|196031750|gb|EDX70346.1| cold shock protein CspA [Bacillus cereus NVH0597-99] gi|227005778|gb|ACP15521.1| cold shock protein CspA [Bacillus anthracis str. CDC 684] gi|228600021|gb|EEK57616.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1] gi|228656931|gb|EEL12755.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4] gi|228662763|gb|EEL18360.1| Cold shock-like protein cspB [Bacillus cereus 95/8201] gi|228693159|gb|EEL46871.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42] gi|228814871|gb|EEM61129.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827200|gb|EEM72953.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833370|gb|EEM78933.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845749|gb|EEM90775.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269202|gb|ACQ50839.1| cold shock protein CspA [Bacillus anthracis str. A0248] gi|300374940|gb|ADK03844.1| cold shock protein [Bacillus cereus biovar anthracis str. CI] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ Sbjct: 1 MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFE 51 >gi|331004967|ref|ZP_08328377.1| Cold shock protein [gamma proteobacterium IMCC1989] gi|330421209|gb|EGG95465.1| Cold shock protein [gamma proteobacterium IMCC1989] Length = 98 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KGYGFI P+ + G+D+F H S++ G L GQ V++D + D Sbjct: 4 GTVKWFNNAKGYGFILPD---DGGEDLFAHYSSIEMDGYKTLKAGQPVSFDTIGGD 56 >gi|323359207|ref|YP_004225603.1| cold shock proteins [Microbacterium testaceum StLB037] gi|323275578|dbj|BAJ75723.1| cold shock proteins [Microbacterium testaceum StLB037] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW+N +KGYGFIT G DVF+H S + +G L EGQ V + Sbjct: 3 QGTVKWFNAEKGYGFIT----VTDGQDVFVHYSNIEMSGFRVLEEGQAVEF 49 >gi|319948998|ref|ZP_08023098.1| cold-shock protein [Dietzia cinnamea P4] gi|319437339|gb|EFV92359.1| cold-shock protein [Dietzia cinnamea P4] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KGYGFI PE + D+F+H S++ G +L E Q V ++ Sbjct: 3 QGTVKWFNAEKGYGFIAPE---DGSADLFVHYSSIEGTGFKSLEENQRVEFE 51 >gi|312959376|ref|ZP_07773893.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] gi|311286093|gb|EFQ64657.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] Length = 69 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KGYGFI E G DVF+H A+ G +L EGQ V Y V + Sbjct: 7 GNVKWFNDAKGYGFI----QREDGKDVFVHYRAIRGEGHRSLAEGQQVEYAVVSGE 58 >gi|307331134|ref|ZP_07610261.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306883214|gb|EFN14273.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 69 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI E + G DVF+H S++ +G +L + Q V + VQ Sbjct: 3 QGTVKWFNAEKGYGFIAQE---DGGPDVFVHYSSIDGSGYRSLVDEQRVEFQIVQGRKGP 59 Query: 64 KYSAENLKLV 73 + AE ++++ Sbjct: 60 Q--AEEVRIL 67 >gi|154502556|ref|ZP_02039616.1| hypothetical protein RUMGNA_00369 [Ruminococcus gnavus ATCC 29149] gi|153796748|gb|EDN79168.1| hypothetical protein RUMGNA_00369 [Ruminococcus gnavus ATCC 29149] Length = 65 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI S G+DVF+H S + G +L EGQ V ++ V A G Sbjct: 3 GTVKWFNNQKGYGFI----SDSEGNDVFVHYSGLVMDGFKSLEEGQAVEFE-VTEGAKGP 57 Query: 65 YSAENLKL 72 + +KL Sbjct: 58 QATNVVKL 65 >gi|292493470|ref|YP_003528909.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus Nc4] gi|291582065|gb|ADE16522.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus Nc4] Length = 69 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI ESG D+F+H ++ G L EGQ V++ VQ Sbjct: 7 GTVKWFNDSKGYGFI----QRESGGDLFVHYRSIVGQGHRTLKEGQQVSFVEVQ 56 >gi|187935705|ref|YP_001885709.1| hypothetical protein CLL_A1515 [Clostridium botulinum B str. Eklund 17B] gi|187723858|gb|ACD25079.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] Length = 69 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KGYGFI S + GDDVF H S + G +L EG+ VT+D +Q+ G Sbjct: 6 GIVKWFNAEKGYGFI----SCDEGDDVFAHHSQIKENGPEKDLHEGESVTFD-IQDGEKG 60 Query: 64 KYSAENLKL 72 + KL Sbjct: 61 PMATNIQKL 69 >gi|188586202|ref|YP_001917747.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350889|gb|ACB85159.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 5/57 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW++ KGYGFI ESG+ DVF+H SA+ G +L +GQ V ++ V+ D Sbjct: 4 GTVKWFDSKKGYGFI----ERESGEGDVFVHFSAINEEGFKSLEDGQEVEFEVVEAD 56 >gi|167838062|ref|ZP_02464921.1| cold-shock domain family protein [Burkholderia thailandensis MSMB43] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFITPEG G+D+F H S + G L E Q V ++ Sbjct: 4 GTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRVDGFKTLQENQKVEFE 51 >gi|117925208|ref|YP_865825.1| cold-shock DNA-binding protein family protein [Magnetococcus sp. MC-1] gi|117608964|gb|ABK44419.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1] Length = 70 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N DKG+GF+ + DVF+H SA++ G +L EGQ V + V Sbjct: 7 GTVKWFNDDKGFGFVARDNDK---GDVFVHHSAISGTGFKSLKEGQRVEFAVV 56 >gi|310767159|gb|ADP12109.1| cold shock-like protein [Erwinia sp. Ejp617] Length = 75 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPVG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQ 54 >gi|145356187|ref|XP_001422318.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582559|gb|ABP00635.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 76 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N KG+GFITP +E ++F+H++ ++ AG + E + V Y+ ++A+G Sbjct: 1 RGKVKWFNVTKGFGFITPHDGSE---EIFVHQTGISRAGFRSAWEDEEVEYEV--SNADG 55 Query: 64 KYSAENL 70 + A N+ Sbjct: 56 RPVAVNV 62 >gi|77920396|ref|YP_358211.1| cold shock proteins [Pelobacter carbinolicus DSM 2380] gi|77546479|gb|ABA90041.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus DSM 2380] Length = 85 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KG+GFI ++G DVF+H SA+ G +L EG V++D V Sbjct: 22 EGTVKWFNDAKGFGFI----EQDNGPDVFVHFSAIQGEGFKSLVEGDRVSFDVV 71 >gi|209695649|ref|YP_002263578.1| cold shock-like protein CspD [Aliivibrio salmonicida LFI1238] gi|208009601|emb|CAQ79897.1| cold shock-like protein CspD [Aliivibrio salmonicida LFI1238] Length = 73 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PEG E G D+F H S + G L GQ VTY+ + G Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIEMDGYRTLKAGQAVTYE-IHEGPKGY 59 Query: 65 YSAE 68 +++E Sbjct: 60 HASE 63 >gi|50955729|ref|YP_063017.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952211|gb|AAT89912.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 73 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 6/55 (10%) Query: 6 SIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58 ++KW+N KG+GFI P +GST DVF+H S +A+ G + NL E Q V YD Q Sbjct: 10 TVKWFNSKKGFGFIAPDDGST----DVFVHYSEIAATGGYRNLDENQKVEYDLAQ 60 >gi|149187680|ref|ZP_01865977.1| cold shock protein [Vibrio shilonii AK1] gi|148838560|gb|EDL55500.1| cold shock protein [Vibrio shilonii AK1] Length = 69 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H S + + G L EGQ V + Q + Sbjct: 7 GTVKWFNETKGFGFI----QQENGPDVFAHFSNIKADGFRTLAEGQKVAFKVTQGQKGPQ 62 Query: 65 YSAENLKLV 73 AE + LV Sbjct: 63 --AEEITLV 69 >gi|307823664|ref|ZP_07653893.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307735649|gb|EFO06497.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 66 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI E+G DVF+H + S+G +L EGQ V + Q Sbjct: 4 GTVKWFNAEKGFGFI----QQENGPDVFVHFRNINSSGFKSLDEGQKVQFTVTQ 53 >gi|158321201|ref|YP_001513708.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158141400|gb|ABW19712.1| cold-shock DNA-binding domain protein [Alkaliphilus oremlandii OhILAs] Length = 66 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GFI+ +G +DVF+H SA+ G L EGQ V ++ V Sbjct: 4 GIVKWFNNEKGFGFISVQGE----EDVFVHFSAINGDGFKTLEEGQEVEFEVV 52 >gi|15234010|ref|NP_195580.1| GRP2 (GLYCINE RICH PROTEIN 2); double-stranded DNA binding / mRNA binding / nucleic acid binding / single-stranded DNA binding [Arabidopsis thaliana] gi|13430580|gb|AAK25912.1|AF360202_1 putative glycine-rich protein GRP2 [Arabidopsis thaliana] gi|14326487|gb|AAK60289.1|AF385696_1 AT4g38680/F20M13_240 [Arabidopsis thaliana] gi|259445|gb|AAB24074.1| glycine-rich protein [Arabidopsis thaliana] gi|4467155|emb|CAB37524.1| glycine-rich protein 2 (GRP2) [Arabidopsis thaliana] gi|7270851|emb|CAB80532.1| glycine-rich protein 2 (GRP2) [Arabidopsis thaliana] gi|14532850|gb|AAK64107.1| putative glycine-rich protein 2 [Arabidopsis thaliana] gi|22137152|gb|AAM91421.1| AT4g38680/F20M13_240 [Arabidopsis thaliana] gi|332661564|gb|AEE86964.1| glycine rich protein 2 [Arabidopsis thaliana] Length = 203 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 33/44 (75%), Gaps = 3/44 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46 +GS+KW++ KG+GFITP+ + GDD+F+H+S++ S G +L Sbjct: 11 RKGSVKWFDTQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSL 51 >gi|297798314|ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp. lyrata] gi|297312877|gb|EFH43300.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp. lyrata] Length = 257 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G + W+N KGYGFITP+ +E ++F+H+S++ S G +L EG V + Q ++GK Sbjct: 13 GKVNWFNDSKGYGFITPDDRSE---ELFVHQSSIVSEGYRSLAEGDSVEFAITQG-SDGK 68 Query: 65 YSA 67 A Sbjct: 69 TKA 71 >gi|39995317|ref|NP_951268.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA] gi|39982079|gb|AAR33541.1| cold-shock domain family protein [Geobacter sulfurreducens PCA] gi|298504323|gb|ADI83046.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens KN400] Length = 66 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+ E+G+DVF+H SA+ G +L EG VT++ + Sbjct: 4 GTVKWFNDSKGFGFL----EQENGEDVFVHFSAINGNGFKSLAEGDRVTFEVTK 53 >gi|163802256|ref|ZP_02196151.1| Cold shock protein [Vibrio sp. AND4] gi|159174061|gb|EDP58871.1| Cold shock protein [Vibrio sp. AND4] Length = 69 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI S ESGDD+F+H ++ G L EG+ V++ Sbjct: 7 GTVKWFNEAKGFGFI----SQESGDDLFVHFRSILGDGFKKLVEGEQVSF 52 >gi|33596619|ref|NP_884262.1| cold shock-like protein [Bordetella parapertussis 12822] gi|33601234|ref|NP_888794.1| cold shock-like protein [Bordetella bronchiseptica RB50] gi|33573320|emb|CAE37303.1| cold shock-like protein [Bordetella parapertussis] gi|33575669|emb|CAE32747.1| cold shock-like protein [Bordetella bronchiseptica RB50] Length = 68 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI P+ ++ D+F H S + S G +L E Q V+++ Q Sbjct: 4 GIVKWFNAEKGYGFIMPDDGSK---DLFAHYSEIRSEGYKSLQENQRVSFEVGQGPKGP- 59 Query: 65 YSAENLKLV 73 SA+N+K++ Sbjct: 60 -SAKNIKVI 67 >gi|78062001|ref|YP_371909.1| cold-shock DNA-binding protein family protein [Burkholderia sp. 383] gi|115358813|ref|YP_775951.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria AMMD] gi|134293656|ref|YP_001117392.1| cold-shock DNA-binding protein family protein [Burkholderia vietnamiensis G4] gi|170700879|ref|ZP_02891866.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171318778|ref|ZP_02907917.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|172063543|ref|YP_001811194.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria MC40-6] gi|206563659|ref|YP_002234422.1| putative cold shock protein [Burkholderia cenocepacia J2315] gi|77969886|gb|ABB11265.1| cold-shock DNA-binding protein family [Burkholderia sp. 383] gi|115284101|gb|ABI89617.1| cold-shock DNA-binding protein family [Burkholderia ambifaria AMMD] gi|134136813|gb|ABO57927.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis G4] gi|170134197|gb|EDT02538.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171096010|gb|EDT40941.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|171996060|gb|ACB66978.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MC40-6] gi|198039699|emb|CAR55669.1| putative cold shock protein [Burkholderia cenocepacia J2315] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFITP+ GDD+F H S + + G L E Q V+++ Q Sbjct: 4 GIVKWFNDSKGFGFITPD---NGGDDLFAHFSEIRADGFKTLAENQKVSFETKQ 54 >gi|229823948|ref|ZP_04450017.1| hypothetical protein GCWU000282_01252 [Catonella morbi ATCC 51271] gi|229786302|gb|EEP22416.1| hypothetical protein GCWU000282_01252 [Catonella morbi ATCC 51271] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 5/59 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N DKG+GFI + + G DVF+H S + + G L EGQ V+YD VQ + G Sbjct: 28 GTVKFFNVDKGFGFI----AGQDGVDVFVHFSNIQADGFKTLNEGQTVSYD-VQETSRG 81 >gi|296141549|ref|YP_003648792.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola DSM 20162] gi|296029683|gb|ADG80453.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola DSM 20162] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P + DDVF+H S + G L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIAP---ADGSDDVFVHYSEIQGNGFRTLEENQQVEFEVGQ 54 >gi|170769983|ref|ZP_02904436.1| cold shock DNA-binding protein [Escherichia albertii TW07627] gi|170121167|gb|EDS90098.1| cold shock DNA-binding protein [Escherichia albertii TW07627] Length = 70 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFI+P ++ G DVF+H +A+ S L E Q V + Q Sbjct: 7 GLVKWFNADKGFGFISP---SDGGKDVFVHFTAIQSNEFRTLNENQKVEFSIEQ 57 >gi|70905153|gb|AAZ14100.1| cold shock protein [Pseudomonas fluorescens] Length = 69 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N +KG+GFITP+G GDD+F+H G +L EGQ V++ V Sbjct: 5 QTGTVKWFNDEKGFGFITPQG---GGDDLFVH-FPFQGTGFKSLQEGQKVSFVVV 55 >gi|259505713|ref|ZP_05748615.1| cold shock protein [Corynebacterium efficiens YS-314] gi|259166686|gb|EEW51240.1| cold shock protein [Corynebacterium efficiens YS-314] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI P ++ DVF+H S + G NL E Q V ++ Sbjct: 3 QGTVKWFNAEKGFGFIAP---SDGSADVFVHYSEIQGNGFRNLEENQQVEFE 51 >gi|259908938|ref|YP_002649294.1| Cold shock protein [Erwinia pyrifoliae Ep1/96] gi|224964560|emb|CAX56073.1| Cold shock protein [Erwinia pyrifoliae Ep1/96] Length = 74 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D Q Sbjct: 3 GTVKWFNNAKGFGFICPVG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQ 53 >gi|229588789|ref|YP_002870908.1| major cold shock protein [Pseudomonas fluorescens SBW25] gi|229360655|emb|CAY47513.1| major cold shock protein [Pseudomonas fluorescens SBW25] Length = 69 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KGYGFI E G DVF+H A+ G +L EGQ V Y V Sbjct: 7 GNVKWFNDAKGYGFI----QREDGKDVFVHYRAIRGEGHRSLAEGQQVEYAVV 55 >gi|322435623|ref|YP_004217835.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321163350|gb|ADW69055.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 89 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G + W+N KG+GFITP E+G DVF+H SA+ G L EG V ++ ++ + G+ Sbjct: 6 GKVAWFNNGKGFGFITP----ETGPDVFVHYSAIMLDGFKTLDEGDTVDFE-IETGSTGR 60 Query: 65 YSAENL 70 A + Sbjct: 61 PEARKV 66 >gi|237800557|ref|ZP_04589018.1| cold shock domain family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023417|gb|EGI03474.1| cold shock domain family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 96 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G + +D+F H SA+ G L GQ V++D +Q Sbjct: 4 GKVKWFNNAKGYGFILEDGKPD--EDLFAHYSAIQMEGYKTLKAGQPVSFDIIQ 55 >gi|237786535|ref|YP_002907240.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385] gi|237759447|gb|ACR18697.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI PE ++ DVF+H + + +G L E Q V ++ Sbjct: 3 QGTVKWFNAEKGFGFIAPEDGSQ---DVFVHYTEIQGSGFRTLEENQKVEFE 51 >gi|88857116|ref|ZP_01131759.1| Cold shock protein [Pseudoalteromonas tunicata D2] gi|88820313|gb|EAR30125.1| Cold shock protein [Pseudoalteromonas tunicata D2] Length = 69 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N KG+GFI SG DVF H SA++ G L EGQ V + Q Sbjct: 7 GSVKWFNEAKGFGFI----EQASGPDVFAHFSAISGDGFKTLAEGQRVQFSVSQ 56 >gi|197105102|ref|YP_002130479.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] gi|196478522|gb|ACG78050.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] Length = 202 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G +KW++ KGYGFI P+ ++ DV LH +++ S+G + EG L+T D V+ Sbjct: 29 GRVKWFDAGKGYGFIVPDDPAQTDLKDVLLHVTSLRSSGREHCLEGSLITCDVVRR 84 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + + +KW+N KGYGF+ + ++ G D+F+H + +G+ +L G+ V + + Sbjct: 133 LEQAKVKWFNRAKGYGFVIRD--SQPG-DIFVHIETLRRSGMEDLQPGENVMVRFAE 186 >gi|83717433|ref|YP_439199.1| cold-shock domain-contain protein [Burkholderia thailandensis E264] gi|167577641|ref|ZP_02370515.1| cold-shock domain family protein-related protein [Burkholderia thailandensis TXDOH] gi|167615783|ref|ZP_02384418.1| cold-shock domain family protein-related protein [Burkholderia thailandensis Bt4] gi|257142321|ref|ZP_05590583.1| cold-shock domain-contain protein [Burkholderia thailandensis E264] gi|83651258|gb|ABC35322.1| cold-shock domain family protein-related protein [Burkholderia thailandensis E264] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N KG+GFITP+ GDD+F H S + S G L + Q V+++ Sbjct: 1 METGTVKWFNETKGFGFITPD---SGGDDLFAHFSEIRSEGYKTLADNQKVSFE 51 >gi|239918416|ref|YP_002957974.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC 2665] gi|281415387|ref|ZP_06247129.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC 2665] gi|6225210|sp|O30875|CSPA_MICLC RecName: Full=Major cold shock protein gi|2425105|gb|AAB70836.1| major cold-shock protein [Micrococcus luteus NCTC 2665] gi|239839623|gb|ACS31420.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC 2665] Length = 67 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI PE ++ DVF+H SA+ G L E V ++ Q+ G Sbjct: 4 GTVKWFNAEKGYGFIAPEDNSA---DVFVHFSAIQGNGFKELQENDRVEFE-TQDGPKGL 59 Query: 65 YSAENLKL 72 +A KL Sbjct: 60 QAANVTKL 67 >gi|148244980|ref|YP_001219674.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA] gi|146326807|dbj|BAF61950.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA] Length = 67 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 8/75 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW++ KG+GFI ESG DVF+H A+ G +L EGQ V +D Sbjct: 1 MSTTGKVKWFDAKKGFGFI----EQESGGDVFVHFRAIQGDGYKSLEEGQEVEFDL---- 52 Query: 61 ANGKYSAENLKLVPK 75 +G+ + + + PK Sbjct: 53 EDGEKGPQAVNVFPK 67 >gi|296273539|ref|YP_003656170.1| cold-shock DNA-binding domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097713|gb|ADG93663.1| cold-shock DNA-binding domain protein [Arcobacter nitrofigilis DSM 7299] Length = 72 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 7/68 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTEGQLVTYDYVQNDAN 62 GS+KW+N +KG+GFI E G DVF+H + S G +L +GQ VT++ Q D Sbjct: 7 GSVKWFNSEKGFGFIEQE---NGGKDVFVHYRNINSTGYGRVSLEDGQKVTFEVAQGDKG 63 Query: 63 GKYSAENL 70 AEN+ Sbjct: 64 --LQAENV 69 >gi|269793785|ref|YP_003313240.1| cold shock domain-containing protein CspD [Sanguibacter keddieii DSM 10542] gi|269095970|gb|ACZ20406.1| cold shock domain protein CspD [Sanguibacter keddieii DSM 10542] Length = 317 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++ WY P KGYGF+TP+G G ++F H SA+ G+ + EGQ V + V+ + Sbjct: 82 GTVTWYEPTKGYGFVTPDG---GGAEIFAHSSAIVGGGV--IAEGQRVAFLVVEGE 132 Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 6/56 (10%) Query: 6 SIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ WY+ KG+GF+TP +SG+ D F+H ++A G L EG V++ V D Sbjct: 164 TVSWYDAGKGFGFVTP----DSGEPDAFVHARSLA-GGATELVEGDRVSFSVVPGD 214 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 5/59 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60 +G+++W++ ++G+GF+ + + DD+F+H S + G +L EGQ V ++ + D Sbjct: 3 QGTVRWFDAERGFGFLALD---DGADDLFVHASEIVGNDDGTQSLREGQSVEFEIGEGD 58 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G + Y+ ++G+GFITP+ G D+F+H S V L EG V + Q+D Sbjct: 256 GVVARYDAERGFGFITPD---SGGPDLFVHVSVVREGQ--ELYEGDRVRFQVRQSD 306 >gi|119946327|ref|YP_944007.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119864931|gb|ABM04408.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 70 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GF+T + G DVF H A+AS G L EGQ V+++ Q Sbjct: 7 GLVKWFDEAKGFGFLTQD---NGGADVFCHFRAIASEGFKTLAEGQKVSFEVEQ 57 >gi|126656639|ref|ZP_01727853.1| cold shock protein [Cyanothece sp. CCY0110] gi|126621859|gb|EAZ92567.1| cold shock protein [Cyanothece sp. CCY0110] Length = 64 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 6/55 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW++ KGYGFI P+ + GDD+F+H S V S +L EGQ V Y+ Q Sbjct: 3 QGQVKWFDVQKGYGFIAPQ---DGGDDLFVHYSEVQSK---SLEEGQTVEYEVGQ 51 >gi|312138659|ref|YP_004005995.1| cold shock protein [Rhodococcus equi 103S] gi|325676272|ref|ZP_08155951.1| cold shock protein CspA [Rhodococcus equi ATCC 33707] gi|311887998|emb|CBH47310.1| cold shock protein [Rhodococcus equi 103S] gi|325552833|gb|EGD22516.1| cold shock protein CspA [Rhodococcus equi ATCC 33707] Length = 67 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI P+ + DVF+H SA+ + G L E Q V ++ Q Sbjct: 4 GTVKWFNAEKGFGFIAPD---DGSADVFVHYSAIQTNGFRTLEENQRVRFEIGQ 54 >gi|294500244|ref|YP_003563944.1| cold shock protein [Bacillus megaterium QM B1551] gi|294350181|gb|ADE70510.1| cold shock protein [Bacillus megaterium QM B1551] Length = 70 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 6/62 (9%) Query: 3 HRGSIKWYNPDKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 H+G++K +N KG GFITPE GS E VF+H +A+ NL+EGQ V ++ +Q A Sbjct: 4 HKGTVKSFNESKGSGFITPEDGSKE----VFVHSNAIDHEEYKNLSEGQKVEFE-IQEGA 58 Query: 62 NG 63 G Sbjct: 59 KG 60 >gi|15839211|ref|NP_299899.1| temperature acclimation protein B [Xylella fastidiosa 9a5c] gi|9107847|gb|AAF85419.1|AE004068_15 temperature acclimation protein B [Xylella fastidiosa 9a5c] Length = 85 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFIT + +G D+F+H A+ G +L EGQ V++ VQ Sbjct: 23 GTVKWFNDNKGFGFIT----SNNGPDLFVHYRAIQGNGFKSLQEGQKVSFVAVQ 72 >gi|54308343|ref|YP_129363.1| putative cold shock-like protein CspD [Photobacterium profundum SS9] gi|46912771|emb|CAG19561.1| putative cold shock-like protein CspD [Photobacterium profundum SS9] Length = 73 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE E D+F H S + G L GQ V Y+ +Q G Sbjct: 4 GTVKWFNNAKGFGFICPE---EGEGDIFAHYSTIQMDGYRTLKAGQQVNYE-IQTGPKGH 59 Query: 65 YSAENLKLVP 74 +++E +VP Sbjct: 60 HASE---IVP 66 >gi|116627693|ref|YP_820312.1| cold shock protein [Streptococcus thermophilus LMD-9] gi|116100970|gb|ABJ66116.1| cold-shock DNA-binding protein family [Streptococcus thermophilus LMD-9] gi|312278226|gb|ADQ62883.1| Cold shock-like protein cspE [Streptococcus thermophilus ND03] Length = 66 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFIT +E G D+F H S++ S G +L E Q V +D Sbjct: 4 GTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFD 50 >gi|28199859|ref|NP_780173.1| temperature acclimation protein B [Xylella fastidiosa Temecula1] gi|71275239|ref|ZP_00651526.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon] gi|71899540|ref|ZP_00681696.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|71899925|ref|ZP_00682072.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|170731236|ref|YP_001776669.1| cold-shock DNA-binding domain-containing protein [Xylella fastidiosa M12] gi|182682610|ref|YP_001830770.1| cold-shock DNA-binding domain-containing protein [Xylella fastidiosa M23] gi|28057980|gb|AAO29822.1| temperature acclimation protein B [Xylella fastidiosa Temecula1] gi|71164048|gb|EAO13763.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon] gi|71730288|gb|EAO32372.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|71730669|gb|EAO32744.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|167966029|gb|ACA13039.1| putative cold-shock DNA-binding domain protein [Xylella fastidiosa M12] gi|182632720|gb|ACB93496.1| cold-shock DNA-binding domain protein [Xylella fastidiosa M23] gi|307578893|gb|ADN62862.1| temperature acclimation protein B [Xylella fastidiosa subsp. fastidiosa GB514] Length = 73 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFIT + +G D+F+H A+ G +L EGQ V++ VQ Sbjct: 11 GTVKWFNDNKGFGFIT----SNNGPDLFVHYRAIQGNGFKSLQEGQKVSFVAVQ 60 >gi|170693647|ref|ZP_02884805.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] gi|170141429|gb|EDT09599.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] Length = 67 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT S G+D+F H S + S G +L E Q V++D V+ Sbjct: 1 METGIVKWFNDAKGFGFIT---SDSGGEDLFAHFSEIRSEGFKSLKENQRVSFD-VKAGP 56 Query: 62 NGKYSA 67 GK +A Sbjct: 57 KGKQAA 62 >gi|297824943|ref|XP_002880354.1| hypothetical protein ARALYDRAFT_480954 [Arabidopsis lyrata subsp. lyrata] gi|297326193|gb|EFH56613.1| hypothetical protein ARALYDRAFT_480954 [Arabidopsis lyrata subsp. lyrata] Length = 198 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 3/45 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47 +GS+KW++ KG+GFITP + GDD+F+H+S++ S G +L Sbjct: 14 RKGSVKWFDTQKGFGFITP---NDGGDDLFVHQSSIRSEGFRSLA 55 >gi|227502480|ref|ZP_03932529.1| cold shock protein [Corynebacterium accolens ATCC 49725] gi|306835053|ref|ZP_07468097.1| cold shock protein CspA [Corynebacterium accolens ATCC 49726] gi|227076849|gb|EEI14812.1| cold shock protein [Corynebacterium accolens ATCC 49725] gi|304569064|gb|EFM44585.1| cold shock protein CspA [Corynebacterium accolens ATCC 49726] Length = 67 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KGYGFI E + G D+F+H S + +G L E Q V+++ Sbjct: 3 QGTVKWFNSEKGYGFIERE---DGGGDIFVHYSEIQGSGFRTLEENQKVSFE 51 >gi|91793188|ref|YP_562839.1| CspD, cold shock [Shewanella denitrificans OS217] gi|91715190|gb|ABE55116.1| cold-shock DNA-binding protein family [Shewanella denitrificans OS217] Length = 67 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI P+ + GDDVF H S + G L GQ V ++ Q Sbjct: 4 GTVKWFNNAKGFGFICPD---QGGDDVFAHYSTIEMEGYRTLKAGQPVQFEVEQ 54 >gi|77361880|ref|YP_341455.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|77362296|ref|YP_341870.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125] gi|315122994|ref|YP_004065000.1| cold shock protein [Pseudoalteromonas sp. SM9913] gi|76876791|emb|CAI88013.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|76877207|emb|CAI89424.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125] gi|315016754|gb|ADT70091.1| cold shock protein [Pseudoalteromonas sp. SM9913] Length = 69 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI ESG DVF H SA++ G L EGQ V + Q + Sbjct: 7 GTVKFFNEAKGFGFI----EQESGADVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKGPQ 62 Query: 65 YSAENLKLV 73 AEN+ + Sbjct: 63 --AENIVCI 69 >gi|2493765|sp|Q45100|CSPE_BACCE RecName: Full=Cold shock-like protein CspE gi|1405478|emb|CAA63611.1| CspE protein [Bacillus cereus] Length = 54 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M G +KW+N +KG+GFI G DVF+H SA+ G +L EGQ V+++ Sbjct: 1 MTLTGKVKWFNSEKGFGFI----EVADGSDVFVHFSAITGDGFKSLDEGQEVSFE 51 >gi|456238|emb|CAA51842.1| cold shock protein [Bacillus subtilis] gi|740007|prf||2004289D cold shock protein Length = 57 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +KW+N +KG+G I EG DDVF+H SA+ G L E Q V+++ V+ + Sbjct: 1 VKWFNSEKGFGLIEVEGQ----DDVFVHFSAIQGEGFKTLEESQAVSFEIVEGN 50 >gi|307107809|gb|EFN56051.1| hypothetical protein CHLNCDRAFT_145510 [Chlorella variabilis] Length = 139 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 9/66 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW GYGFITP+ G+D+F+H++A+ S G +L EG+ V + +V+ +G+ Sbjct: 8 GTVKW-----GYGFITPD---SGGEDLFVHQTAIVSEGFRSLREGEPVEF-FVETSDDGR 58 Query: 65 YSAENL 70 A N+ Sbjct: 59 QKAVNV 64 >gi|162447160|ref|YP_001620292.1| DNA-binding cold shock protein [Acholeplasma laidlawii PG-8A] gi|161985267|gb|ABX80916.1| cold shock protein, DNA-binding [Acholeplasma laidlawii PG-8A] Length = 65 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW++ KGYGFIT ++G DVF+H SA+ + G +L EG V ++ D Sbjct: 2 KGTVKWFDAGKGYGFITA----DNGKDVFVHYSAIQTDGYKSLAEGDQVEFEIKSGD 54 >gi|299140055|ref|ZP_07033224.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX8] gi|298597901|gb|EFI54070.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX8] Length = 94 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++G++KW+N KG+GF+ + +SG DVF+H SA+ G +L EG V +D +Q Sbjct: 27 YKGTVKWFNNAKGFGFL----ARDSGPDVFVHYSAIQLDGYKSLKEGDEVEFDVIQ 78 >gi|296118095|ref|ZP_06836677.1| putative cold shock protein [Corynebacterium ammoniagenes DSM 20306] gi|295968981|gb|EFG82224.1| putative cold shock protein [Corynebacterium ammoniagenes DSM 20306] Length = 67 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI PE + DVF+H S + G L E Q V+++ Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQQVSFE 51 >gi|317047537|ref|YP_004115185.1| cold-shock DNA-binding domain-containing protein [Pantoea sp. At-9b] gi|316949154|gb|ADU68629.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b] Length = 73 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D Sbjct: 4 GTVKWFNNAKGFGFICPIG---GGDDIFAHYSTIQMEGYRTLKAGQQVQFD 51 >gi|163802257|ref|ZP_02196152.1| transcription elongation factor GreB [Vibrio sp. AND4] gi|159174062|gb|EDP58872.1| transcription elongation factor GreB [Vibrio sp. AND4] Length = 69 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI S ESGDD+F+H ++ G L EG+ V++ Sbjct: 7 GTVKWFNEAKGFGFI----SQESGDDLFVHFRSILGDGFKKLVEGEKVSF 52 >gi|295105906|emb|CBL03449.1| cold-shock DNA-binding protein family [Gordonibacter pamelaeae 7-10-1-b] Length = 67 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N DKGYGFI+ +G GDD+F+H S + + G L E V + + NGK Sbjct: 4 GTVKWFNADKGYGFISQDG----GDDLFVHFSEIQTDGFKTLEENAHVEFTVAVGN-NGK 58 Query: 65 YSA 67 A Sbjct: 59 SQA 61 >gi|294508943|ref|YP_003565832.1| cold-shock DNA-binding domain protein [Bacillus megaterium QM B1551] gi|294352247|gb|ADE72569.1| cold-shock DNA-binding domain protein [Bacillus megaterium QM B1551] Length = 69 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G+IKWYN +KGYGFIT E TE +F+ ++ G +L EGQ V++D Sbjct: 6 GTIKWYNFNKGYGFITREDETE----IFVSYRSIEGNGYADLREGQKVSFD 52 >gi|294139962|ref|YP_003555940.1| stress response protein CspD [Shewanella violacea DSS12] gi|293326431|dbj|BAJ01162.1| stress response protein CspD [Shewanella violacea DSS12] Length = 73 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW+N KG+GFI P G+DVF H SA+ G L GQ V Y Sbjct: 3 KGTVKWFNNTKGFGFICP---GAGGEDVFAHYSAIQMEGYRTLVAGQTVEY 50 >gi|192360604|ref|YP_001983030.1| cold-shock protein CspD [Cellvibrio japonicus Ueda107] gi|190686769|gb|ACE84447.1| cold-shock protein CspD [Cellvibrio japonicus Ueda107] Length = 125 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 3/60 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KGYGFI + E G+D+F H SA++ G L GQ V+++ + D Sbjct: 41 IMPTGTVKWFNNAKGYGFILAD---EGGEDLFAHYSAISMDGYKTLKAGQQVSFEITRGD 97 >gi|331694459|ref|YP_004330698.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949148|gb|AEA22845.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans CB1190] Length = 67 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI + ++G DVF+H SA+ + G L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIA---TDDNGPDVFVHYSAIQTDGFRTLEENQRVDFEASQ 54 >gi|322515089|ref|ZP_08068096.1| CspA family cold shock transcriptional regulator [Actinobacillus ureae ATCC 25976] gi|322118895|gb|EFX91077.1| CspA family cold shock transcriptional regulator [Actinobacillus ureae ATCC 25976] Length = 69 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ + G D+F+H S + + L EG V ++ VQ+ G Sbjct: 6 GIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFE-VQDSDRGP 61 Query: 65 YSAENLK 71 SA N+K Sbjct: 62 -SAVNVK 67 >gi|296113319|ref|YP_003627257.1| cold-shock DNA-binding protein family [Moraxella catarrhalis RH4] gi|295921013|gb|ADG61364.1| cold-shock DNA-binding protein family [Moraxella catarrhalis RH4] Length = 91 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G +KW+N KG+GFI E+G+DVF+H A+ G +L EGQ V + D Sbjct: 27 EQGVVKWFNDAKGFGFI----QRETGEDVFVHFRAIQGEGYRSLKEGQAVEFVVTTGD-K 81 Query: 63 GKYSAENLKL 72 G + E KL Sbjct: 82 GLQAEEVTKL 91 >gi|254428424|ref|ZP_05042131.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881] gi|196194593|gb|EDX89552.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881] Length = 62 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KW+N KG+GFI+ + + G DVF+H SA+ +G L EGQ V+++ Q Sbjct: 1 MKWFNESKGFGFISQD---DGGADVFVHFSAITGSGFKTLAEGQKVSFEIQQ 49 >gi|89897618|ref|YP_521105.1| hypothetical protein DSY4872 [Desulfitobacterium hafniense Y51] gi|219670745|ref|YP_002461180.1| cold-shock DNA-binding protein [Desulfitobacterium hafniense DCB-2] gi|89337066|dbj|BAE86661.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219541005|gb|ACL22744.1| cold-shock DNA-binding domain protein [Desulfitobacterium hafniense DCB-2] Length = 65 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KGYGFI EG + G D+F+H S++ G L EGQ V +D VQ Sbjct: 3 GKVKWFSKQKGYGFI--EG--DHGQDIFVHFSSIMGDGFRTLEEGQGVEFDIVQ 52 >gi|95929679|ref|ZP_01312421.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] gi|95134376|gb|EAT16033.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] Length = 66 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GFI ++G DVF+H SA+ G +L EG V++D V + G Sbjct: 4 GSVKWFNDSKGFGFI----EQDNGPDVFVHFSAIQGDGFKSLAEGDRVSFD-VTDGQKGP 58 Query: 65 YSAENLKL 72 SA ++ Sbjct: 59 QSANVRRI 66 >gi|55820886|ref|YP_139328.1| cold shock protein B [Streptococcus thermophilus LMG 18311] gi|55822803|ref|YP_141244.1| cold shock protein B [Streptococcus thermophilus CNRZ1066] gi|55736871|gb|AAV60513.1| cold shock protein B [Streptococcus thermophilus LMG 18311] gi|55738788|gb|AAV62429.1| cold shock protein B [Streptococcus thermophilus CNRZ1066] Length = 88 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N KG+GFIT +E G D+F H S++ S G +L E Q V +D Sbjct: 22 IMANGTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFD 72 >gi|254492515|ref|ZP_05105687.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga thiooxidans DMS010] gi|224462407|gb|EEF78684.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga thiooxydans DMS010] Length = 68 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI ESG DVF H S + G L EGQ V + Q A G Sbjct: 6 GTVKWFNEAKGFGFI----EQESGPDVFAHFSQIKGDGFRTLNEGQRVEFTVTQG-AKGP 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 -QAENI 65 >gi|53804855|ref|YP_113293.1| cold shock protein [Methylococcus capsulatus str. Bath] gi|53758616|gb|AAU92907.1| cold shock protein [Methylococcus capsulatus str. Bath] Length = 69 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +G++KW+N KG+GFI E+G D+F+H ++ G L EGQ V++ V Sbjct: 5 QQGTVKWFNESKGFGFI----QRENGSDLFVHFRSIQGQGFKTLKEGQRVSFTEV 55 >gi|330819166|ref|YP_004348028.1| cold-shock DNA-binding domain protein [Burkholderia gladioli BSR3] gi|327371161|gb|AEA62516.1| cold-shock DNA-binding domain protein [Burkholderia gladioli BSR3] Length = 67 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFITP+ GDD+F H S V+ G L E Q V+++ Sbjct: 4 GIVKWFNDSKGFGFITPD---NGGDDLFAHFSEVSGDGFKTLAENQKVSFE 51 >gi|317053579|ref|YP_004118713.1| cold-shock DNA-binding domain-containing protein [Pantoea sp. At-9b] gi|316952684|gb|ADU72157.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b] Length = 70 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG GFITPE ++ DVF+H SA+ +L EGQ V + ++N G Sbjct: 7 GTVKWFNAEKGLGFITPENGSK---DVFVHFSAIQGNDYRSLDEGQRVEF-ILENGQKGP 62 Query: 65 YSA 67 +A Sbjct: 63 AAA 65 >gi|330812228|ref|YP_004356690.1| transcriptional regulator, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380336|gb|AEA71686.1| putative transcriptional regulator, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 70 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 4/65 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFIT + G+++F+H SA+A G L + Q V+++ V+ G Sbjct: 6 KGTVKWFNDAKGYGFIT---CGKGGEELFVHYSAIAGEGYKTLKQRQTVSFE-VEKGGKG 61 Query: 64 KYSAE 68 +A+ Sbjct: 62 MQAAK 66 >gi|83746258|ref|ZP_00943311.1| Cold shock protein [Ralstonia solanacearum UW551] gi|207742557|ref|YP_002258949.1| cold shock-like protein cspd [Ralstonia solanacearum IPO1609] gi|83727008|gb|EAP74133.1| Cold shock protein [Ralstonia solanacearum UW551] gi|206593950|emb|CAQ60877.1| cold shock-like protein cspd [Ralstonia solanacearum IPO1609] Length = 67 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI+ + E G+++F H SA+ G L EGQ V ++ Q Sbjct: 4 GTVKWFNDAKGFGFISLD---EGGEELFAHFSAIQMNGFKTLKEGQRVVFEVTQ 54 >gi|330810451|ref|YP_004354913.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378559|gb|AEA69909.1| putative Transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 89 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI G + +D+F H SA+ G L GQ VT+D +Q Sbjct: 8 GKVKWFNNAKGYGFIIAAGRDD--EDLFAHYSAINMEGYKTLKAGQPVTFDVIQ 59 >gi|90413211|ref|ZP_01221206.1| putative cold shock-like protein CspD [Photobacterium profundum 3TCK] gi|90325763|gb|EAS42221.1| putative cold shock-like protein CspD [Photobacterium profundum 3TCK] Length = 73 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE E D+F H S + G L GQ V Y+ +Q G Sbjct: 4 GTVKWFNNAKGFGFICPE---EGEGDIFAHYSTIQMDGYRTLKAGQQVNYE-IQTGPKGH 59 Query: 65 YSAENLKL 72 +++E + + Sbjct: 60 HASEIIPV 67 >gi|88857117|ref|ZP_01131760.1| Cold shock protein [Pseudoalteromonas tunicata D2] gi|88820314|gb|EAR30126.1| Cold shock protein [Pseudoalteromonas tunicata D2] Length = 69 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GS+KW+N KG+GFI SG DVF H SA++ G L EGQ V + Q Sbjct: 7 GSVKWFNEAKGFGFI----EQASGPDVFAHFSAISGDGFKTLAEGQRVQFTVSQ 56 >gi|297568667|ref|YP_003690011.1| cold-shock DNA-binding domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924582|gb|ADH85392.1| cold-shock DNA-binding domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 66 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KG+GFI + +SG DVF+H +A+ G +L EG V ++ V Sbjct: 3 EGTVKWFNDAKGFGFI----AQDSGSDVFVHHTAILGQGFKSLQEGARVEFEIV 52 >gi|319935036|ref|ZP_08009479.1| cold shock protein cspC [Coprobacillus sp. 29_1] gi|319810054|gb|EFW06423.1| cold shock protein cspC [Coprobacillus sp. 29_1] Length = 65 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +KW+N +KG+GFI G DVF+H S + G +L EG++V ++ Q+D Sbjct: 2 QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQIVQDGYKSLNEGEVVEFELYQSD 54 >gi|317500145|ref|ZP_07958378.1| cold shock protein CspA [Lachnospiraceae bacterium 8_1_57FAA] gi|331087628|ref|ZP_08336556.1| cold shock-like protein cspC [Lachnospiraceae bacterium 3_1_46FAA] gi|316898434|gb|EFV20472.1| cold shock protein CspA [Lachnospiraceae bacterium 8_1_57FAA] gi|330399807|gb|EGG79467.1| cold shock-like protein cspC [Lachnospiraceae bacterium 3_1_46FAA] Length = 65 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI S G+D+F+H S + G L EGQ V ++ V A G Sbjct: 3 GTVKWFNNQKGYGFI----SDSEGNDIFVHYSGLVMDGFKTLEEGQAVEFE-VTEGAKGP 57 Query: 65 YSAENLKL 72 + +KL Sbjct: 58 QATNVVKL 65 >gi|320108152|ref|YP_004183742.1| cold-shock DNA-binding domain-containing protein [Terriglobus saanensis SP1PR4] gi|319926673|gb|ADV83748.1| cold-shock DNA-binding domain protein [Terriglobus saanensis SP1PR4] Length = 71 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 4/58 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++GS+KW+N KG+GF+ E+G DVF+H S++ G +L EG V +D +Q + Sbjct: 4 YKGSVKWFNNAKGFGFL----GRENGPDVFVHYSSIQLDGYKSLKEGDEVEFDVIQGE 57 >gi|330718236|ref|ZP_08312836.1| cold-shock DNA-binding protein family protein [Leuconostoc fallax KCTC 3537] Length = 74 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +K + D+GYG+ITP+ E GDD+F+H + + G +L +G+ VTY VQ Sbjct: 4 GKVKIWQQDRGYGYITPD---EGGDDIFVHFNGIDMPGFKSLHQGEAVTYVLVQ 54 >gi|291550100|emb|CBL26362.1| cold-shock DNA-binding protein family [Ruminococcus torques L2-14] Length = 65 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI S G+D+F+H S + G +L EGQ V ++ V A G Sbjct: 3 GTVKWFNNQKGYGFI----SDAEGNDIFVHYSGLVMDGFKSLEEGQAVEFE-VTEGAKGP 57 Query: 65 YSAENLKL 72 + +KL Sbjct: 58 QAVNVVKL 65 >gi|257057404|ref|YP_003135236.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] gi|256587276|gb|ACU98409.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] Length = 68 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI + G DVF+H SA+ + G L EG V ++ + +G+ Sbjct: 4 GTVKWFNAEKGYGFI----ESPDGPDVFVHYSAIQAEGFRTLDEGDRVEFE-ITAGRDGR 58 Query: 65 YSAENLK 71 A +++ Sbjct: 59 SQAADVR 65 >gi|254520602|ref|ZP_05132658.1| cold shock protein [Clostridium sp. 7_2_43FAA] gi|226914351|gb|EEH99552.1| cold shock protein [Clostridium sp. 7_2_43FAA] Length = 69 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 5/57 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 G++KWY+ +KGYGFI S G+DVF+H S + G +L EG+ +T+D +N+ Sbjct: 6 GTVKWYSMEKGYGFI----SCNEGNDVFVHHSQIKEKGPEKDLHEGENITFDIQENE 58 >gi|148974863|ref|ZP_01811843.1| cold shock DNA-binding domain protein [Vibrionales bacterium SWAT-3] gi|145965372|gb|EDK30621.1| cold shock DNA-binding domain protein [Vibrionales bacterium SWAT-3] Length = 69 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V ++V + Sbjct: 7 GTVKWFNETKGFGFI----QQENGPDVFAHFSAITGEGFKTLAEGQKV--EFVVSQGQKG 60 Query: 65 YSAENLKLV 73 A+++K++ Sbjct: 61 PQADSIKVL 69 >gi|149927840|ref|ZP_01916091.1| cold-shock DNA-binding domain family protein [Limnobacter sp. MED105] gi|149823462|gb|EDM82693.1| cold-shock DNA-binding domain family protein [Limnobacter sp. MED105] Length = 69 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +K++N KG+GFI S E+G DVF+H SA+ G L EGQ V++ Q Sbjct: 7 GQVKFFNESKGFGFI----SRENGPDVFVHFSAIQGNGFKTLAEGQKVSFTVTQ 56 >gi|153814427|ref|ZP_01967095.1| hypothetical protein RUMTOR_00637 [Ruminococcus torques ATCC 27756] gi|145848823|gb|EDK25741.1| hypothetical protein RUMTOR_00637 [Ruminococcus torques ATCC 27756] Length = 70 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI S G+D+F+H S + G L EGQ V ++ V A G Sbjct: 8 GTVKWFNNQKGYGFI----SDSEGNDIFVHYSGLVMDGFKTLEEGQAVEFE-VTEGAKGP 62 Query: 65 YSAENLKL 72 + +KL Sbjct: 63 QATNVVKL 70 >gi|108757963|ref|YP_633461.1| cold-shock protein CspB [Myxococcus xanthus DK 1622] gi|4193392|gb|AAD10034.1| CspB [Myxococcus xanthus] gi|108461843|gb|ABF87028.1| cold-shock protein CspB [Myxococcus xanthus DK 1622] Length = 66 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI + ++G+DVF H +A+ G L EGQ V ++ + Sbjct: 4 GTVKWFNDAKGFGFI----AQDNGEDVFCHHTAINMDGFRTLQEGQQVEFEVTRGPKG-- 57 Query: 65 YSAENLKLV 73 A+N++ V Sbjct: 58 LQAQNVRAV 66 >gi|217976725|ref|YP_002360872.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] gi|217502101|gb|ACK49510.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] Length = 217 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW++ +KG+GF+ S + G DVF+H S + +G+ NL EGQ V+ V Sbjct: 154 GTVKWFDDNKGFGFVQ---SNDGGKDVFVHISILGPSGVQNLAEGQAVSMRVV 203 >gi|169796394|ref|YP_001714187.1| cold shock-like protein [Acinetobacter baumannii AYE] gi|213156868|ref|YP_002318913.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii AB0057] gi|215483856|ref|YP_002326081.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294] gi|169149321|emb|CAM87205.1| cold shock-like protein [Acinetobacter baumannii AYE] gi|213056028|gb|ACJ40930.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii AB0057] gi|213988514|gb|ACJ58813.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294] Length = 69 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI ++G DVF H ++S+G L EGQ V+++ Q Sbjct: 7 GTVKWFNETKGFGFI----QQDTGPDVFAHFKEISSSGFKTLYEGQRVSFNIAQ 56 >gi|157158051|ref|YP_001462848.1| cold shock DNA-binding protein [Escherichia coli E24377A] gi|331668012|ref|ZP_08368867.1| conserved domain protein [Escherichia coli TA271] gi|331673146|ref|ZP_08373914.1| conserved domain protein [Escherichia coli TA280] gi|157080081|gb|ABV19789.1| cold shock DNA-binding protein [Escherichia coli E24377A] gi|222033318|emb|CAP76058.1| Cold shock-like protein cspB [Escherichia coli LF82] gi|331064754|gb|EGI36658.1| conserved domain protein [Escherichia coli TA271] gi|331069344|gb|EGI40731.1| conserved domain protein [Escherichia coli TA280] Length = 71 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N DKG+GFI+P + DVF+H SA+ + L EGQ VT+ Sbjct: 7 GLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTF 53 >gi|117929224|ref|YP_873775.1| cold-shock DNA-binding protein family protein [Acidothermus cellulolyticus 11B] gi|117649687|gb|ABK53789.1| cold-shock DNA-binding protein family [Acidothermus cellulolyticus 11B] Length = 65 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N +KG+GFI +G G DVF+H SA+ G L E Q V ++ Q Sbjct: 2 QGVVKWFNAEKGFGFIAVDG----GSDVFVHYSAIQGEGYRTLAENQRVDFEITQ 52 >gi|296113754|ref|YP_003627692.1| cold shock-like protein [Moraxella catarrhalis RH4] gi|295921448|gb|ADG61799.1| cold shock-like protein [Moraxella catarrhalis RH4] gi|326562103|gb|EGE12431.1| cold shock-like protein [Moraxella catarrhalis 7169] gi|326564532|gb|EGE14758.1| cold shock-like protein [Moraxella catarrhalis 46P47B1] gi|326565716|gb|EGE15879.1| cold shock-like protein [Moraxella catarrhalis 12P80B1] gi|326566284|gb|EGE16436.1| cold shock-like protein [Moraxella catarrhalis 103P14B1] gi|326567064|gb|EGE17186.1| cold shock-like protein [Moraxella catarrhalis BC1] gi|326568328|gb|EGE18408.1| cold shock-like protein [Moraxella catarrhalis BC7] gi|326572229|gb|EGE22224.1| cold shock-like protein [Moraxella catarrhalis BC8] gi|326574571|gb|EGE24511.1| cold shock-like protein [Moraxella catarrhalis O35E] gi|326574827|gb|EGE24757.1| cold shock-like protein [Moraxella catarrhalis 101P30B1] gi|326576151|gb|EGE26066.1| cold shock-like protein [Moraxella catarrhalis CO72] Length = 70 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI + G DVF H SA+ +G L EGQ V + Sbjct: 7 GTVKWFNESKGFGFIAQD---NGGQDVFAHYSAITGSGFKTLAEGQKVAF 53 >gi|238920383|ref|YP_002933898.1| cold shock domain protein CspD, [Edwardsiella ictaluri 93-146] gi|238869952|gb|ACR69663.1| cold shock domain protein CspD, putative [Edwardsiella ictaluri 93-146] Length = 73 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N KG+GFI P GDD+F H +A+ G L GQ V +D Sbjct: 1 METGTVKWFNNAKGFGFICP---ASGGDDIFAHYTAIQMEGYRTLKAGQQVQFD 51 >gi|15800910|ref|NP_286926.1| cold shock protein CspG [Escherichia coli O157:H7 EDL933] gi|25296143|pir||E85634 homolog of Salmonella cold shock protein [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12514257|gb|AAG55537.1|AE005293_1 homolog of Salmonella cold shock protein [Escherichia coli O157:H7 str. EDL933] Length = 70 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFITP+ ++ DVF+H +A+ S L E Q V + Q Sbjct: 7 GLVKWFNADKGFGFITPDDGSK---DVFVHFTAIQSNEFRTLNENQKVEFSIEQ 57 >gi|227202808|dbj|BAH56877.1| AT4G38680 [Arabidopsis thaliana] Length = 204 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 33/44 (75%), Gaps = 3/44 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46 +GS+KW++ KG+GFITP+ + GDD+F+H+S++ S G +L Sbjct: 11 RKGSVKWFDTQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSL 51 >gi|163816662|ref|ZP_02208025.1| hypothetical protein COPEUT_02852 [Coprococcus eutactus ATCC 27759] gi|158447919|gb|EDP24914.1| hypothetical protein COPEUT_02852 [Coprococcus eutactus ATCC 27759] Length = 66 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KGYGFI E G DVF+H SA+ G L EG V Y+ V + Sbjct: 4 GKVKWFNAKKGYGFICD----EDGTDVFVHFSALNMEGFKALEEGDTVEYEVVDGE 55 >gi|326560305|gb|EGE10693.1| cold-shock DNA-binding protein family [Moraxella catarrhalis 7169] gi|326562975|gb|EGE13254.1| cold-shock DNA-binding protein family [Moraxella catarrhalis 46P47B1] gi|326563611|gb|EGE13863.1| cold-shock DNA-binding protein family [Moraxella catarrhalis 103P14B1] gi|326565318|gb|EGE15498.1| cold-shock DNA-binding protein family [Moraxella catarrhalis 12P80B1] gi|326566377|gb|EGE16527.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC1] gi|326570186|gb|EGE20231.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC8] gi|326570924|gb|EGE20948.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC7] gi|326573218|gb|EGE23186.1| cold-shock DNA-binding protein family [Moraxella catarrhalis 101P30B1] gi|326575880|gb|EGE25803.1| cold-shock DNA-binding protein family [Moraxella catarrhalis CO72] gi|326576345|gb|EGE26254.1| cold-shock DNA-binding protein family [Moraxella catarrhalis O35E] Length = 68 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G +KW+N KG+GFI E+G+DVF+H A+ G +L EGQ V + D Sbjct: 4 EQGVVKWFNDAKGFGFI----QRETGEDVFVHFRAIQGEGYRSLKEGQAVEFVVTTGD-K 58 Query: 63 GKYSAENLKL 72 G + E KL Sbjct: 59 GLQAEEVTKL 68 >gi|25029285|ref|NP_739339.1| hypothetical protein CE2729 [Corynebacterium efficiens YS-314] gi|23494573|dbj|BAC19539.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 251 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI P ++ DVF+H S + G NL E Q V ++ Sbjct: 187 QGTVKWFNAEKGFGFIAP---SDGSADVFVHYSEIQGNGFRNLEENQQVEFE 235 >gi|114321683|ref|YP_743366.1| cold-shock DNA-binding protein family protein [Alkalilimnicola ehrlichii MLHE-1] gi|114228077|gb|ABI57876.1| cold-shock DNA-binding protein family [Alkalilimnicola ehrlichii MLHE-1] Length = 69 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW++ KG+GFI E G+DVF+H A+ G +L EGQ V ++ V+ Sbjct: 7 GTVKWFDNAKGFGFI----QREQGEDVFVHFRAIRGEGFRSLDEGQQVEFNVVR 56 >gi|226357786|ref|YP_002787526.1| cold shock protein [Deinococcus deserti VCD115] gi|226320029|gb|ACO48022.1| putative cold shock protein [Deinococcus deserti VCD115] Length = 87 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI T G DVF H SA++ +G L EG V ++ + Sbjct: 4 GKVKWFNAEKGFGFI----ETPGGPDVFAHFSAISGSGFKKLNEGDEVEFELEEGQRGKG 59 Query: 65 YSAENL 70 A+N+ Sbjct: 60 PQAKNI 65 >gi|226358070|ref|YP_002787809.1| Cold shock protein [Deinococcus deserti VCD115] gi|226319713|gb|ACO47707.1| putative Cold shock protein [Deinococcus deserti VCD115] Length = 87 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI T G DVF H SA++ +G L EG V ++ + Sbjct: 4 GKVKWFNAEKGFGFI----ETPGGPDVFAHFSAISGSGFKKLNEGDEVEFELEEGQRGKG 59 Query: 65 YSAENL 70 A+N+ Sbjct: 60 PQAKNI 65 >gi|15830399|ref|NP_309172.1| cold shock protein CspG [Escherichia coli O157:H7 str. Sakai] gi|16128956|ref|NP_415510.1| cold shock protein homolog, cold-inducible [Escherichia coli str. K-12 substr. MG1655] gi|26247008|ref|NP_753048.1| cold shock protein CspG [Escherichia coli CFT073] gi|74311547|ref|YP_309966.1| cold shock protein CspG [Shigella sonnei Ss046] gi|82544687|ref|YP_408634.1| cold shock protein CspG [Shigella boydii Sb227] gi|89107840|ref|AP_001620.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|91210080|ref|YP_540066.1| cold shock protein CspG [Escherichia coli UTI89] gi|110641171|ref|YP_668901.1| cold shock protein CspG [Escherichia coli 536] gi|157157933|ref|YP_001462221.1| cold shock protein CspG [Escherichia coli E24377A] gi|157160508|ref|YP_001457826.1| cold shock protein CspG [Escherichia coli HS] gi|168747396|ref|ZP_02772418.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|168754310|ref|ZP_02779317.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|168763226|ref|ZP_02788233.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|168767487|ref|ZP_02792494.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|168773676|ref|ZP_02798683.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|168781006|ref|ZP_02806013.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|168787495|ref|ZP_02812502.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|168800619|ref|ZP_02825626.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|170020611|ref|YP_001725565.1| cold shock protein CspG [Escherichia coli ATCC 8739] gi|170080648|ref|YP_001729968.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|170683191|ref|YP_001744186.1| cold shock protein CspG [Escherichia coli SMS-3-5] gi|187730656|ref|YP_001880813.1| cold shock protein CspG [Shigella boydii CDC 3083-94] gi|188493174|ref|ZP_03000444.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|191166565|ref|ZP_03028394.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|191172438|ref|ZP_03033979.1| cold shock DNA-binding protein [Escherichia coli F11] gi|193066327|ref|ZP_03047377.1| cold shock DNA-binding protein [Escherichia coli E22] gi|193070805|ref|ZP_03051739.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194429832|ref|ZP_03062345.1| cold shock DNA-binding protein [Escherichia coli B171] gi|194432411|ref|ZP_03064698.1| cold shock DNA-binding protein [Shigella dysenteriae 1012] gi|194438072|ref|ZP_03070165.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|195935247|ref|ZP_03080629.1| cold shock protein CspG [Escherichia coli O157:H7 str. EC4024] gi|208806958|ref|ZP_03249295.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208814978|ref|ZP_03256157.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208822652|ref|ZP_03262971.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209398274|ref|YP_002269715.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209918242|ref|YP_002292326.1| cold shock protein CspG [Escherichia coli SE11] gi|215486106|ref|YP_002328537.1| cold shock protein CspG [Escherichia coli O127:H6 str. E2348/69] gi|217324361|ref|ZP_03440445.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|218553577|ref|YP_002386490.1| cold shock protein CspG [Escherichia coli IAI1] gi|218557881|ref|YP_002390794.1| cold shock protein CspG [Escherichia coli S88] gi|218688878|ref|YP_002397090.1| cold shock protein CspG [Escherichia coli ED1a] gi|218694525|ref|YP_002402192.1| cold shock protein CspG [Escherichia coli 55989] gi|218700498|ref|YP_002408127.1| cold shock protein CspG [Escherichia coli IAI39] gi|218704406|ref|YP_002411925.1| cold shock protein CspG [Escherichia coli UMN026] gi|227884058|ref|ZP_04001863.1| CspA family cold shock transcriptional regulator [Escherichia coli 83972] gi|237707032|ref|ZP_04537513.1| cold shock protein CspG [Escherichia sp. 3_2_53FAA] gi|238900249|ref|YP_002926045.1| DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|253773981|ref|YP_003036812.1| cold shock protein CspG [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161102|ref|YP_003044210.1| cold shock protein CspG [Escherichia coli B str. REL606] gi|254792247|ref|YP_003077084.1| cold shock protein CspG [Escherichia coli O157:H7 str. TW14359] gi|256018751|ref|ZP_05432616.1| cold shock protein CspG [Shigella sp. D9] gi|256023309|ref|ZP_05437174.1| cold shock protein CspG [Escherichia sp. 4_1_40B] gi|260843237|ref|YP_003221015.1| DNA-binding transcriptional regulator CspG [Escherichia coli O103:H2 str. 12009] gi|260854693|ref|YP_003228584.1| DNA-binding transcriptional regulator CspG [Escherichia coli O26:H11 str. 11368] gi|260867198|ref|YP_003233600.1| DNA-binding transcriptional regulator CspG [Escherichia coli O111:H- str. 11128] gi|261227159|ref|ZP_05941440.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261255727|ref|ZP_05948260.1| DNA-binding transcriptional regulator CspG [Escherichia coli O157:H7 str. FRIK966] gi|291281988|ref|YP_003498806.1| Cold shock-like protein cspG [Escherichia coli O55:H7 str. CB9615] gi|293404283|ref|ZP_06648277.1| cold shock-like protein cspG [Escherichia coli FVEC1412] gi|293409367|ref|ZP_06652943.1| conserved hypothetical protein [Escherichia coli B354] gi|293414265|ref|ZP_06656914.1| cold shock protein [Escherichia coli B185] gi|293433284|ref|ZP_06661712.1| cold shock-like protein CspC [Escherichia coli B088] gi|297519754|ref|ZP_06938140.1| cold shock protein CspG [Escherichia coli OP50] gi|298380066|ref|ZP_06989671.1| cold shock-like protein cspG [Escherichia coli FVEC1302] gi|300819431|ref|ZP_07099628.1| transcriptional repressor activity CueR [Escherichia coli MS 107-1] gi|300823951|ref|ZP_07104074.1| transcriptional repressor activity CueR [Escherichia coli MS 119-7] gi|300896362|ref|ZP_07114904.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300902844|ref|ZP_07120792.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300920966|ref|ZP_07137356.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300925325|ref|ZP_07141215.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|300929241|ref|ZP_07144720.1| transcriptional repressor activity CueR [Escherichia coli MS 187-1] gi|300937663|ref|ZP_07152469.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|300949634|ref|ZP_07163620.1| transcriptional repressor activity CueR [Escherichia coli MS 116-1] gi|300957866|ref|ZP_07170042.1| transcriptional repressor activity CueR [Escherichia coli MS 175-1] gi|300978251|ref|ZP_07174199.1| transcriptional repressor activity CueR [Escherichia coli MS 45-1] gi|300982793|ref|ZP_07176303.1| transcriptional repressor activity CueR [Escherichia coli MS 200-1] gi|301022616|ref|ZP_07186487.1| transcriptional repressor activity CueR [Escherichia coli MS 196-1] gi|301023111|ref|ZP_07186918.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|301047756|ref|ZP_07194812.1| transcriptional repressor activity CueR [Escherichia coli MS 185-1] gi|301302393|ref|ZP_07208524.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|301327177|ref|ZP_07220443.1| transcriptional repressor activity CueR [Escherichia coli MS 78-1] gi|301646375|ref|ZP_07246260.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|306812571|ref|ZP_07446764.1| cold shock protein CspG [Escherichia coli NC101] gi|307137622|ref|ZP_07496978.1| cold shock protein CspG [Escherichia coli H736] gi|307311625|ref|ZP_07591265.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|309795021|ref|ZP_07689441.1| transcriptional repressor activity CueR [Escherichia coli MS 145-7] gi|312968952|ref|ZP_07783159.1| cold shock-like protein cspG [Escherichia coli 2362-75] gi|331641521|ref|ZP_08342656.1| conserved domain protein [Escherichia coli H736] gi|331646244|ref|ZP_08347347.1| conserved domain protein [Escherichia coli M605] gi|331652014|ref|ZP_08353033.1| conserved domain protein [Escherichia coli M718] gi|331657050|ref|ZP_08358012.1| conserved domain protein [Escherichia coli TA206] gi|331662397|ref|ZP_08363320.1| conserved domain protein [Escherichia coli TA143] gi|331667381|ref|ZP_08368245.1| conserved domain protein [Escherichia coli TA271] gi|331672524|ref|ZP_08373313.1| conserved domain protein [Escherichia coli TA280] gi|331676780|ref|ZP_08377476.1| conserved domain protein [Escherichia coli H591] gi|331682495|ref|ZP_08383114.1| conserved domain protein [Escherichia coli H299] gi|332279828|ref|ZP_08392241.1| cold shock protein CspG [Shigella sp. D9] gi|71154162|sp|P0A980|CSPG_ECO57 RecName: Full=Cold shock-like protein CspG; Short=CPS-G gi|71154163|sp|P0A979|CSPG_ECOL6 RecName: Full=Cold shock-like protein CspG; Short=CPS-G gi|71154164|sp|P0A978|CSPG_ECOLI RecName: Full=Cold shock-like protein CspG; Short=CPS-G gi|71154165|sp|P0A981|CSPG_SHIFL RecName: Full=Cold shock-like protein CspG; Short=CPS-G gi|26107408|gb|AAN79591.1|AE016758_195 Cold shock-like protein cspG [Escherichia coli CFT073] gi|1468921|dbj|BAA09669.1| cold shock potein CspG [Escherichia coli K-12] gi|2226344|gb|AAB61741.1| CspG [Escherichia coli str. K-12 substr. W3110] gi|2367114|gb|AAC74075.1| cold shock protein homolog, cold-inducible [Escherichia coli str. K-12 substr. MG1655] gi|4062549|dbj|BAA35756.1| DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|13360605|dbj|BAB34568.1| cold shock-like protein CspG [Escherichia coli O157:H7 str. Sakai] gi|73855024|gb|AAZ87731.1| cold shock protein-like protein [Shigella sonnei Ss046] gi|81246098|gb|ABB66806.1| CspG [Shigella boydii Sb227] gi|91071654|gb|ABE06535.1| cold shock-like protein G [Escherichia coli UTI89] gi|110342763|gb|ABG69000.1| cold shock-like protein CspG [Escherichia coli 536] gi|157066188|gb|ABV05443.1| cold shock DNA-binding protein [Escherichia coli HS] gi|157079963|gb|ABV19671.1| cold shock DNA-binding protein [Escherichia coli E24377A] gi|169755539|gb|ACA78238.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|169888483|gb|ACB02190.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|170520909|gb|ACB19087.1| cold shock DNA-binding protein [Escherichia coli SMS-3-5] gi|187427648|gb|ACD06922.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94] gi|187770523|gb|EDU34367.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|188018100|gb|EDU56222.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|188488373|gb|EDU63476.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|189001168|gb|EDU70154.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|189358364|gb|EDU76783.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|189363259|gb|EDU81678.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|189366600|gb|EDU85016.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|189372631|gb|EDU91047.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|189377110|gb|EDU95526.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|190903370|gb|EDV63090.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|190907322|gb|EDV66920.1| cold shock DNA-binding protein [Escherichia coli F11] gi|192926034|gb|EDV80678.1| cold shock DNA-binding protein [Escherichia coli E22] gi|192955916|gb|EDV86385.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194412114|gb|EDX28423.1| cold shock DNA-binding protein [Escherichia coli B171] gi|194419298|gb|EDX35380.1| cold shock DNA-binding protein [Shigella dysenteriae 1012] gi|194423008|gb|EDX39002.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|208726759|gb|EDZ76360.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208731626|gb|EDZ80314.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208738137|gb|EDZ85820.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209159674|gb|ACI37107.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209774128|gb|ACI85376.1| cold shock-like protein CspG [Escherichia coli] gi|209774130|gb|ACI85377.1| cold shock-like protein CspG [Escherichia coli] gi|209774132|gb|ACI85378.1| cold shock-like protein CspG [Escherichia coli] gi|209774134|gb|ACI85379.1| cold shock-like protein CspG [Escherichia coli] gi|209774136|gb|ACI85380.1| cold shock-like protein CspG [Escherichia coli] gi|209911501|dbj|BAG76575.1| cold shock-like protein [Escherichia coli SE11] gi|215264178|emb|CAS08522.1| DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|217320582|gb|EEC29006.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|218351257|emb|CAU96961.1| DNA-binding transcriptional regulator [Escherichia coli 55989] gi|218360345|emb|CAQ97895.1| DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|218364650|emb|CAR02336.1| DNA-binding transcriptional regulator [Escherichia coli S88] gi|218370484|emb|CAR18291.1| DNA-binding transcriptional regulator [Escherichia coli IAI39] gi|218426442|emb|CAR07268.1| DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|218431503|emb|CAR12381.1| DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|222032705|emb|CAP75444.1| Cold shock-like protein cspG [Escherichia coli LF82] gi|226898242|gb|EEH84501.1| cold shock protein CspG [Escherichia sp. 3_2_53FAA] gi|227838810|gb|EEJ49276.1| CspA family cold shock transcriptional regulator [Escherichia coli 83972] gi|238860954|gb|ACR62952.1| DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|242376803|emb|CAQ31516.1| cold shock protein CspG [Escherichia coli BL21(DE3)] gi|253325025|gb|ACT29627.1| cold-shock DNA-binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973003|gb|ACT38674.1| DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253977217|gb|ACT42887.1| DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|254591647|gb|ACT71008.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|257753342|dbj|BAI24844.1| DNA-binding transcriptional regulator CspG [Escherichia coli O26:H11 str. 11368] gi|257758384|dbj|BAI29881.1| DNA-binding transcriptional regulator CspG [Escherichia coli O103:H2 str. 12009] gi|257763554|dbj|BAI35049.1| DNA-binding transcriptional regulator CspG [Escherichia coli O111:H- str. 11128] gi|260449865|gb|ACX40287.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|281178106|dbj|BAI54436.1| cold shock-like protein [Escherichia coli SE15] gi|284920825|emb|CBG33888.1| cold shock-like protein [Escherichia coli 042] gi|290761861|gb|ADD55822.1| Cold shock-like protein cspG [Escherichia coli O55:H7 str. CB9615] gi|291324103|gb|EFE63525.1| cold shock-like protein CspC [Escherichia coli B088] gi|291428869|gb|EFF01894.1| cold shock-like protein cspG [Escherichia coli FVEC1412] gi|291434323|gb|EFF07296.1| cold shock protein [Escherichia coli B185] gi|291469835|gb|EFF12319.1| conserved hypothetical protein [Escherichia coli B354] gi|294493742|gb|ADE92498.1| cold shock DNA-binding protein [Escherichia coli IHE3034] gi|298279764|gb|EFI21272.1| cold shock-like protein cspG [Escherichia coli FVEC1302] gi|299881188|gb|EFI89399.1| transcriptional repressor activity CueR [Escherichia coli MS 196-1] gi|300300365|gb|EFJ56750.1| transcriptional repressor activity CueR [Escherichia coli MS 185-1] gi|300307058|gb|EFJ61578.1| transcriptional repressor activity CueR [Escherichia coli MS 200-1] gi|300315437|gb|EFJ65221.1| transcriptional repressor activity CueR [Escherichia coli MS 175-1] gi|300359773|gb|EFJ75643.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300397232|gb|EFJ80770.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|300405111|gb|EFJ88649.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300409716|gb|EFJ93254.1| transcriptional repressor activity CueR [Escherichia coli MS 45-1] gi|300412086|gb|EFJ95396.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300418547|gb|EFK01858.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|300450965|gb|EFK14585.1| transcriptional repressor activity CueR [Escherichia coli MS 116-1] gi|300457311|gb|EFK20804.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|300462807|gb|EFK26300.1| transcriptional repressor activity CueR [Escherichia coli MS 187-1] gi|300523583|gb|EFK44652.1| transcriptional repressor activity CueR [Escherichia coli MS 119-7] gi|300528027|gb|EFK49089.1| transcriptional repressor activity CueR [Escherichia coli MS 107-1] gi|300842232|gb|EFK69992.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|300846210|gb|EFK73970.1| transcriptional repressor activity CueR [Escherichia coli MS 78-1] gi|301075411|gb|EFK90217.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|305853334|gb|EFM53773.1| cold shock protein CspG [Escherichia coli NC101] gi|306908180|gb|EFN38679.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|307552814|gb|ADN45589.1| cold shock-like protein CspG [Escherichia coli ABU 83972] gi|307627598|gb|ADN71902.1| cold shock protein CspG [Escherichia coli UM146] gi|308121325|gb|EFO58587.1| transcriptional repressor activity CueR [Escherichia coli MS 145-7] gi|309701267|emb|CBJ00567.1| cold shock-like protein [Escherichia coli ETEC H10407] gi|312286354|gb|EFR14267.1| cold shock-like protein cspG [Escherichia coli 2362-75] gi|312945495|gb|ADR26322.1| cold shock protein CspG [Escherichia coli O83:H1 str. NRG 857C] gi|315060274|gb|ADT74601.1| DNA-binding transcriptional regulator [Escherichia coli W] gi|315135640|dbj|BAJ42799.1| cold shock-like protein cspG [Escherichia coli DH1] gi|315258037|gb|EFU38005.1| transcriptional repressor activity CueR [Escherichia coli MS 85-1] gi|315287611|gb|EFU47017.1| transcriptional repressor activity CueR [Escherichia coli MS 110-3] gi|315291158|gb|EFU50521.1| transcriptional repressor activity CueR [Escherichia coli MS 153-1] gi|315296282|gb|EFU55588.1| transcriptional repressor activity CueR [Escherichia coli MS 16-3] gi|320175185|gb|EFW50295.1| Cold shock protein CspG [Shigella dysenteriae CDC 74-1112] gi|320178568|gb|EFW53533.1| Cold shock protein CspG [Shigella boydii ATCC 9905] gi|320187200|gb|EFW61901.1| Cold shock protein CspG [Shigella flexneri CDC 796-83] gi|320192513|gb|EFW67155.1| Cold shock protein CspG [Escherichia coli O157:H7 str. EC1212] gi|320196522|gb|EFW71145.1| Cold shock protein CspG [Escherichia coli WV_060327] gi|320200218|gb|EFW74806.1| Cold shock protein CspG [Escherichia coli EC4100B] gi|320637857|gb|EFX07649.1| cold shock protein CspG [Escherichia coli O157:H7 str. G5101] gi|320642982|gb|EFX12183.1| cold shock protein CspG [Escherichia coli O157:H- str. 493-89] gi|320648439|gb|EFX17094.1| cold shock protein CspG [Escherichia coli O157:H- str. H 2687] gi|320653756|gb|EFX21830.1| cold shock protein CspG [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659598|gb|EFX27161.1| cold shock protein CspG [Escherichia coli O55:H7 str. USDA 5905] gi|320664369|gb|EFX31520.1| cold shock protein CspG [Escherichia coli O157:H7 str. LSU-61] gi|323157489|gb|EFZ43599.1| cold shock-like protein cspG [Escherichia coli EPECa14] gi|323158184|gb|EFZ44278.1| cold shock-like protein cspG [Escherichia coli E128010] gi|323165477|gb|EFZ51264.1| cold shock-like protein cspG [Shigella sonnei 53G] gi|323174903|gb|EFZ60518.1| cold shock-like protein cspG [Escherichia coli LT-68] gi|323175877|gb|EFZ61471.1| cold shock-like protein cspG [Escherichia coli 1180] gi|323185302|gb|EFZ70666.1| cold shock-like protein cspG [Escherichia coli 1357] gi|323379166|gb|ADX51434.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323938094|gb|EGB34356.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1520] gi|323942904|gb|EGB39069.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323947221|gb|EGB43229.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323953315|gb|EGB49181.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H252] gi|323958282|gb|EGB53991.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H263] gi|323962875|gb|EGB58450.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H489] gi|323967237|gb|EGB62661.1| cold-shock DNA-binding domain-containing protein [Escherichia coli M863] gi|323973135|gb|EGB68327.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|323976631|gb|EGB71719.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TW10509] gi|324009920|gb|EGB79139.1| transcriptional repressor activity CueR [Escherichia coli MS 57-2] gi|324013378|gb|EGB82597.1| transcriptional repressor activity CueR [Escherichia coli MS 60-1] gi|324019120|gb|EGB88339.1| transcriptional repressor activity CueR [Escherichia coli MS 117-3] gi|324117147|gb|EGC11055.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1167] gi|326338568|gb|EGD62395.1| Cold shock protein CspG [Escherichia coli O157:H7 str. 1125] gi|326347791|gb|EGD71507.1| Cold shock protein CspG [Escherichia coli O157:H7 str. 1044] gi|327253387|gb|EGE65025.1| cold shock-like protein cspG [Escherichia coli STEC_7v] gi|330910756|gb|EGH39266.1| cold shock protein CspG [Escherichia coli AA86] gi|331038319|gb|EGI10539.1| conserved domain protein [Escherichia coli H736] gi|331044996|gb|EGI17123.1| conserved domain protein [Escherichia coli M605] gi|331050292|gb|EGI22350.1| conserved domain protein [Escherichia coli M718] gi|331055298|gb|EGI27307.1| conserved domain protein [Escherichia coli TA206] gi|331060819|gb|EGI32783.1| conserved domain protein [Escherichia coli TA143] gi|331064966|gb|EGI36861.1| conserved domain protein [Escherichia coli TA271] gi|331070167|gb|EGI41533.1| conserved domain protein [Escherichia coli TA280] gi|331075469|gb|EGI46767.1| conserved domain protein [Escherichia coli H591] gi|331080126|gb|EGI51305.1| conserved domain protein [Escherichia coli H299] gi|332092462|gb|EGI97535.1| cold shock-like protein cspG [Shigella boydii 5216-82] gi|332093343|gb|EGI98401.1| cold shock-like protein cspG [Shigella boydii 3594-74] gi|332095879|gb|EGJ00886.1| cold shock-like protein cspG [Shigella dysenteriae 155-74] gi|332102180|gb|EGJ05526.1| cold shock protein CspG [Shigella sp. D9] gi|332342432|gb|AEE55766.1| cold shock-like protein CspG [Escherichia coli UMNK88] Length = 70 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFITP+ ++ DVF+H +A+ S L E Q V + Q Sbjct: 7 GLVKWFNADKGFGFITPDDGSK---DVFVHFTAIQSNEFRTLNENQKVEFSIEQ 57 >gi|261868763|ref|YP_003256685.1| cold-shock DNA-binding domain-containing protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414095|gb|ACX83466.1| cold-shock DNA-binding domain protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 69 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P T+ DVF+H S + L EG V Y+ VQN G Sbjct: 6 GTVKWFNSIKGFGFIAP---TDGSKDVFVHFSGIVGNNFRTLNEGDHVAYN-VQNSQRGP 61 Query: 65 YSAE 68 + E Sbjct: 62 TAIE 65 >gi|239627541|ref|ZP_04670572.1| cold-shock DNA-binding domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239517687|gb|EEQ57553.1| cold-shock DNA-binding domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 65 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI S E G+DVF+H S + G +L EG V ++ V N A G Sbjct: 2 KGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLDEGAEVEFEVV-NGAKG 56 Query: 64 KYSAENLKL 72 + +L Sbjct: 57 PQATNVTRL 65 >gi|58584964|ref|YP_198537.1| cold shock protein [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419280|gb|AAW71295.1| Cold shock protein [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 84 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 16/82 (19%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----------NLTEGQLVTY 54 G+IKW+N +KGYGFI PE +G+D+F+H S + +G+ +G+ V+Y Sbjct: 4 GNIKWFNAEKGYGFIKPEA---NGNDIFVHISTLERSGIRPDSLRGENKEKGIKGERVSY 60 Query: 55 DYVQ---NDANGKYSAENLKLV 73 + + + GK A NLKL+ Sbjct: 61 ELKEERGRNGEGKKFAINLKLL 82 >gi|325121612|gb|ADY81135.1| cold shock-like protein [Acinetobacter calcoaceticus PHEA-2] Length = 69 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI ++G DVF H ++S+G L EGQ V+++ Q Sbjct: 7 GTVKWFNETKGFGFI----QQDTGPDVFAHFKEISSSGFKTLYEGQRVSFNIAQ 56 >gi|260550026|ref|ZP_05824241.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter sp. RUH2624] gi|260407018|gb|EEX00496.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter sp. RUH2624] Length = 71 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI T+ G DVF H S + + G L EGQ V + Q Sbjct: 6 GTVKWFNETKGFGFI----QTDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQ 55 >gi|71278580|ref|YP_269596.1| cold shock-like protein CspD [Colwellia psychrerythraea 34H] gi|71144320|gb|AAZ24793.1| cold shock-like protein CspD [Colwellia psychrerythraea 34H] Length = 72 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M H G++KW+N KG+GFI P+ G+D+F H S + G L GQ V DY ND Sbjct: 1 MAH-GTVKWFNNAKGFGFIRPD---SGGEDIFAHYSTIEMDGYRTLKAGQDV--DYELND 54 Query: 61 ANGKYSAENLKLV 73 + A ++KL Sbjct: 55 GPKGHHAASIKLA 67 >gi|295677335|ref|YP_003605859.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|295437178|gb|ADG16348.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] Length = 67 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT S G+D+F H S + S G +L E Q V+++ V+ Sbjct: 1 METGVVKWFNDAKGFGFIT---SDAGGEDLFAHFSEIRSEGFKSLKENQRVSFE-VKTSP 56 Query: 62 NGKYSA 67 GK +A Sbjct: 57 KGKQAA 62 >gi|126641275|ref|YP_001084259.1| cold shock protein [Acinetobacter baumannii ATCC 17978] gi|169796561|ref|YP_001714354.1| cold shock-like protein [Acinetobacter baumannii AYE] gi|184157530|ref|YP_001845869.1| cold shock protein [Acinetobacter baumannii ACICU] gi|213156325|ref|YP_002318745.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii AB0057] gi|215484022|ref|YP_002326247.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB307-0294] gi|239503700|ref|ZP_04663010.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB900] gi|260558025|ref|ZP_05830237.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] gi|332854616|ref|ZP_08435438.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150] gi|332867722|ref|ZP_08437811.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113] gi|332875420|ref|ZP_08443246.1| cold shock-like protein CspE [Acinetobacter baumannii 6014059] gi|126387159|gb|ABO11657.1| Cold shock protein [Acinetobacter baumannii ATCC 17978] gi|169149488|emb|CAM87376.1| cold shock-like protein [Acinetobacter baumannii AYE] gi|183209124|gb|ACC56522.1| Cold shock protein [Acinetobacter baumannii ACICU] gi|213055485|gb|ACJ40387.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii AB0057] gi|213988970|gb|ACJ59269.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB307-0294] gi|260408535|gb|EEX01841.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] gi|322507844|gb|ADX03298.1| Cold shock protein [Acinetobacter baumannii 1656-2] gi|323517444|gb|ADX91825.1| cold shock protein [Acinetobacter baumannii TCDC-AB0715] gi|332727900|gb|EGJ59299.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150] gi|332733806|gb|EGJ64957.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113] gi|332736356|gb|EGJ67357.1| cold shock-like protein CspE [Acinetobacter baumannii 6014059] Length = 71 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI T+ G DVF H S + + G L EGQ V + Q Sbjct: 6 GTVKWFNETKGFGFI----QTDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQ 55 >gi|260773863|ref|ZP_05882778.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14] gi|260610824|gb|EEX36028.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14] Length = 70 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI+ + G DVF+H +++ S G L EGQ V++ N GK Sbjct: 7 GTVKWFNETKGFGFISQD---NGGKDVFVHFNSIVSDGFKTLAEGQKVSF----NVEEGK 59 Query: 65 YSAENLKLVP 74 + ++ P Sbjct: 60 KGPQATEVTP 69 >gi|227487248|ref|ZP_03917564.1| CspA family cold shock transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227541584|ref|ZP_03971633.1| CspA family cold shock transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227092906|gb|EEI28218.1| CspA family cold shock transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227182552|gb|EEI63524.1| CspA family cold shock transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 67 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G+++W+NP+ GYGFI + ESG D+F+ S + AG L E Q V Y +V G Sbjct: 3 QGTVRWFNPESGYGFIIDD---ESGQDLFVRYSDIEGAGFRTLQENQRVDY-FVMEGPKG 58 Query: 64 KYSAE 68 +++ Sbjct: 59 AHASR 63 >gi|111017122|ref|YP_700094.1| cold shock protein [Rhodococcus jostii RHA1] gi|110816652|gb|ABG91936.1| cold shock protein [Rhodococcus jostii RHA1] Length = 119 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G+++W+N ++G+GF+ P + DD+F+H S +A G L EGQ V++ + + Sbjct: 56 GTVRWFNAEQGFGFLAP---ADGSDDIFVHVSEIAGDGHRILEEGQRVSFAVCRTE 108 >gi|2970685|gb|AAC06037.1| cold shock protein C [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 69 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 5 KGQGKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60 >gi|256375184|ref|YP_003098844.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] gi|255919487|gb|ACU34998.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] Length = 68 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M +G++KW+N +KG+GFI+P+ G DVF+H S + G L E Q V ++ Q Sbjct: 1 MAVQGTVKWFNAEKGFGFISPD---NGGADVFVHYSEIQVNGYRTLEENQRVEFEIGQ 55 >gi|56459145|ref|YP_154426.1| cold shock protein [Idiomarina loihiensis L2TR] gi|56178155|gb|AAV80877.1| Cold shock protein [Idiomarina loihiensis L2TR] Length = 68 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +K++N KG+GFI E+G DVF+H SA+ S G L EGQ V++ Q Sbjct: 6 GKVKFFNEAKGFGFI----EQENGADVFVHFSAIQSDGFKTLAEGQQVSFTVAQ 55 >gi|153854155|ref|ZP_01995463.1| hypothetical protein DORLON_01454 [Dorea longicatena DSM 13814] gi|149753204|gb|EDM63135.1| hypothetical protein DORLON_01454 [Dorea longicatena DSM 13814] Length = 65 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N KGYGFI S G DVF+H S + G L EGQ V Y+ + Sbjct: 2 KGTVKWFNNQKGYGFI----SDAEGHDVFVHYSGLNMEGFKTLEEGQEVEYEVTE 52 >gi|86137410|ref|ZP_01055987.1| cold shock family protein [Roseobacter sp. MED193] gi|85825745|gb|EAQ45943.1| cold shock family protein [Roseobacter sp. MED193] Length = 72 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G DVF+H S V +GL L + V Y+ + +G+ Sbjct: 4 GTVKWFNTTKGFGFIEPDA---GGSDVFVHISQVERSGLTGLADNMKVDYELTEG-RDGR 59 Query: 65 YSAENLK 71 A ++K Sbjct: 60 QMAGDIK 66 >gi|289423507|ref|ZP_06425308.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] gi|289156009|gb|EFD04673.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] Length = 66 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GFI+ +G +DVF+H SA+ G +L EGQ V ++ V Sbjct: 4 GVVKWFNNEKGFGFISVDGE----NDVFVHFSAIQGDGYKSLEEGQQVEFEIV 52 >gi|27366952|ref|NP_762479.1| cold shock protein CspE [Vibrio vulnificus CMCP6] gi|37676727|ref|NP_937123.1| cold shock protein [Vibrio vulnificus YJ016] gi|320158831|ref|YP_004191209.1| cold shock protein CspE [Vibrio vulnificus MO6-24/O] gi|27358519|gb|AAO07469.1| Cold shock protein CspE [Vibrio vulnificus CMCP6] gi|37201270|dbj|BAC97093.1| cold shock protein [Vibrio vulnificus YJ016] gi|319934143|gb|ADV89006.1| cold shock protein CspE [Vibrio vulnificus MO6-24/O] Length = 69 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V++ Q + Sbjct: 7 GTVKWFNETKGFGFI----KQENGPDVFAHFSAIKGDGFRTLAEGQKVSFVISQGQKGPQ 62 Query: 65 YSAENLKLV 73 AE + L+ Sbjct: 63 --AEEITLL 69 >gi|119775193|ref|YP_927933.1| cold-shock DNA-binding domain-containing protein [Shewanella amazonensis SB2B] gi|119767693|gb|ABM00264.1| cold-shock DNA-binding protein family [Shewanella amazonensis SB2B] Length = 68 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI P+ E G+DVF H S + G L GQ V ++ Q Sbjct: 4 GTVKWFNNAKGFGFICPD---EGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEQ 54 >gi|269139554|ref|YP_003296255.1| cold shock protein [Edwardsiella tarda EIB202] gi|267985215|gb|ACY85044.1| cold shock protein [Edwardsiella tarda EIB202] gi|304559442|gb|ADM42106.1| Cold shock protein CspD [Edwardsiella tarda FL6-60] Length = 73 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI P GDD+F H +A+ G L GQ V +D Sbjct: 4 GTVKWFNNAKGFGFICP---ASGGDDIFAHYTAIQMEGYRTLKAGQQVQFD 51 >gi|262372757|ref|ZP_06066036.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] gi|262312782|gb|EEY93867.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] Length = 72 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI +SG DVF H S + S G L EGQ V++ Q Sbjct: 7 GTVKWFNETKGFGFI----HADSGQDVFAHFSEIQSNGFKVLHEGQRVSFTVAQ 56 >gi|262276771|ref|ZP_06054564.1| conserved domain protein [alpha proteobacterium HIMB114] gi|262223874|gb|EEY74333.1| conserved domain protein [alpha proteobacterium HIMB114] Length = 68 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N KGYGFI E + DVF+H SAV +G+ L EG +T++ ++ Sbjct: 1 MSIKGKVKWFNGTKGYGFIEREDKEK---DVFVHMSAVKDSGVGYLDEGDSLTFE-IEEG 56 Query: 61 ANGKYSAENLK 71 G SA NLK Sbjct: 57 KKGP-SAVNLK 66 >gi|330819200|ref|YP_004348062.1| Cold shock protein [Burkholderia gladioli BSR3] gi|327371195|gb|AEA62550.1| Cold shock protein [Burkholderia gladioli BSR3] Length = 67 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI P+ S DD+F H S + G +L EGQ V+++ Sbjct: 4 GIVKWFNDSKGFGFIAPDNSK---DDLFAHFSEIRGDGFRSLVEGQRVSFE 51 >gi|209972098|gb|ACJ03560.1| cold shock protein [Bacillus thuringiensis serovar poloniensis] Length = 67 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+ + Sbjct: 1 MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSLE 51 >gi|71065101|ref|YP_263828.1| cold-shock DNA-binding protein family protein [Psychrobacter arcticus 273-4] gi|93005356|ref|YP_579793.1| cold-shock DNA-binding domain-containing protein [Psychrobacter cryohalolentis K5] gi|71038086|gb|AAZ18394.1| cold-shock DNA-binding protein family [Psychrobacter arcticus 273-4] gi|92393034|gb|ABE74309.1| cold-shock DNA-binding protein family [Psychrobacter cryohalolentis K5] gi|118185010|gb|ABK76501.1| CspA-like protein [Psychrobacter sp. B6] Length = 70 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI + G DVF H SA+ G L EGQ V+ ++ D Sbjct: 6 EGTVKWFNEAKGFGFIAQD---NGGQDVFAHYSAIQGGGFKTLAEGQKVS--FILGDGKK 60 Query: 64 KYSAENLKLV 73 AE ++ + Sbjct: 61 GPQAEQIEAI 70 >gi|299770790|ref|YP_003732816.1| Cold shock-like protein cspG [Acinetobacter sp. DR1] gi|298700878|gb|ADI91443.1| Cold shock-like protein cspG [Acinetobacter sp. DR1] Length = 69 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI ++G DVF H ++S+G L EGQ V+++ Q Sbjct: 7 GTVKWFNETKGFGFI----QQDAGPDVFAHFKEISSSGFKTLYEGQRVSFNIAQ 56 >gi|296128179|ref|YP_003635429.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] gi|296019994|gb|ADG73230.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] Length = 418 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++ WY P KGYGF+TP+G G ++F+H SAV G+ L +GQ V + Sbjct: 79 GTVSWYEPAKGYGFLTPDG---GGAEIFVHSSAVVGGGV--LHDGQRVAF 123 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ WY+ +KG+GF+ P+ + G+DVF H ++ GL L EG VT+D V D Sbjct: 158 GTVTWYDAEKGFGFVAPD---DGGEDVFAHAKSLV-GGLSELVEGDRVTFDVV--DGEKG 211 Query: 65 YSAENLKLV 73 A +++LV Sbjct: 212 PQARDIRLV 220 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++ Y+ D+G+GFI P+ GDD+F+H S V G L EG V Y+ Q+D Sbjct: 251 GTVARYDADRGFGFIRPDA---GGDDLFVHVSVV--RGDEPLEEGDRVRYEVRQSD 301 >gi|304397050|ref|ZP_07378929.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|304355199|gb|EFM19567.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] Length = 74 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI P G G+D+F H S + G L GQ V +D Sbjct: 4 GTVKWFNNSKGFGFICPVG---GGEDIFAHYSTIQMEGYRTLKAGQQVQFD 51 >gi|304321239|ref|YP_003854882.1| cold shock protein [Parvularcula bermudensis HTCC2503] gi|303300141|gb|ADM09740.1| cold shock protein [Parvularcula bermudensis HTCC2503] Length = 173 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +KW++ KGYGFIT E G DV +H S + +G EG +VT + ++++ Sbjct: 15 RGFVKWFDQTKGYGFITDEA---GGRDVLIHSSCLKQSGRATAPEGAIVTCEAIESE 68 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 ++KW++ KGYGF+T +T + +D+F+H V +AGL L GQ + Y Sbjct: 108 TVKWFSRAKGYGFLT---ATNANEDIFVHMEVVRAAGLSELQPGQRLRASY 155 >gi|127512493|ref|YP_001093690.1| cold-shock DNA-binding domain-containing protein [Shewanella loihica PV-4] gi|126637788|gb|ABO23431.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4] Length = 68 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PE G+DVF H S + G L GQ V ++ Q Sbjct: 4 GTVKWFNNAKGFGFICPEA---GGEDVFAHYSTIEMEGYRTLKAGQSVQFEVEQ 54 >gi|108803028|ref|YP_642965.1| cold-shock DNA-binding protein family protein [Rubrobacter xylanophilus DSM 9941] gi|108764271|gb|ABG03153.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus DSM 9941] Length = 67 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW++ +KGYGFI+P+ +E D+F+H + + G L EG V+Y+ Sbjct: 3 QGTVKWFSDEKGYGFISPDDGSE---DLFVHYTGIEGTGFKTLEEGARVSYE 51 >gi|330965607|gb|EGH65867.1| cold shock domain family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 94 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G + +D+F H SA+ G L GQ V++D +Q Sbjct: 6 GKVKWFNNAKGYGFILEDGKPD--EDLFAHFSAIQMDGYKTLKAGQPVSFDIIQ 57 >gi|317509214|ref|ZP_07966835.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316252424|gb|EFV11873.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 145 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ DKG+GF+T E GDDV++ SA+ AGL L GQ+V + A Sbjct: 5 VPTGKVKWYSADKGFGFLT----QEDGDDVYVGSSAL-PAGLEGLKPGQIVEFGM----A 55 Query: 62 NGKYSAENLKL 72 +G+ + L + Sbjct: 56 DGRRGPQALSI 66 >gi|332856166|ref|ZP_08436156.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150] gi|332871668|ref|ZP_08440139.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113] gi|332727143|gb|EGJ58603.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150] gi|332731306|gb|EGJ62602.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113] Length = 83 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI ++G DVF H ++S+G L EGQ V+++ Q Sbjct: 21 GTVKWFNETKGFGFI----QQDTGPDVFAHFKEISSSGFKTLYEGQRVSFNIAQ 70 >gi|300698107|ref|YP_003748768.1| cold shock/stress protein, member of the Csp-family [Ralstonia solanacearum CFBP2957] gi|299074831|emb|CBJ54398.1| cold shock/stress protein, member of the Csp-family [Ralstonia solanacearum CFBP2957] Length = 67 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW+N KG+GFITP+ G+D+F H S V G +L EGQ V++ Sbjct: 1 METGIVKWFNDSKGFGFITPD---AGGNDLFAHFSEVQGNGFKSLQEGQKVSF 50 >gi|302873232|ref|YP_003841865.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|307688601|ref|ZP_07631047.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|302576089|gb|ADL50101.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans 743B] Length = 65 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFIT ++ G ++F+H S ++ G +L EG V+++ ++ N Sbjct: 2 QGNVKWFNGLKGYGFIT----SDDGSEIFVHYSGISGEGYKSLEEGDKVSFETAEH--NN 55 Query: 64 KYSAENLKLV 73 K A N+K + Sbjct: 56 KLQAVNVKKI 65 >gi|238753480|ref|ZP_04614843.1| Cold shock-like protein cspD [Yersinia ruckeri ATCC 29473] gi|238708433|gb|EEQ00788.1| Cold shock-like protein cspD [Yersinia ruckeri ATCC 29473] Length = 73 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PE G+D+F H S + G L GQ V +D Q Sbjct: 4 GTVKWFNNAKGFGFICPE---NGGEDIFAHYSTIQMDGYRTLKAGQQVNFDIHQ 54 >gi|117620914|ref|YP_857368.1| hypothetical protein AHA_2864 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|145298472|ref|YP_001141313.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida A449] gi|117562321|gb|ABK39269.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|142851244|gb|ABO89565.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 69 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++K++N KG+GFI E+G DVF+H SA++ G L EGQ V + Q Sbjct: 7 GTVKFFNETKGFGFI----QQENGPDVFVHFSAISGNGFRTLAEGQRVQFSVTQ 56 >gi|226944903|ref|YP_002799976.1| cold shock protein, CspD [Azotobacter vinelandii DJ] gi|226719830|gb|ACO79001.1| cold shock protein, CspD [Azotobacter vinelandii DJ] Length = 92 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G E D+F H SA+ G L GQ VT++ +Q Sbjct: 4 GKVKWFNNAKGYGFIVADGRDE---DLFAHYSAIQMDGYKTLKAGQAVTFELLQ 54 >gi|312961675|ref|ZP_07776173.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] gi|311283934|gb|EFQ62517.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] Length = 91 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGF+ + TE D+F H SA+ G L GQ+V+++ +Q Sbjct: 8 GKVKWFNNAKGYGFVNEDRKTE---DLFAHYSAIIMDGYKTLKAGQVVSFEIIQ 58 >gi|145225805|ref|YP_001136483.1| cold-shock DNA-binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315442490|ref|YP_004075369.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] gi|145218291|gb|ABP47695.1| cold-shock DNA-binding protein family [Mycobacterium gilvum PYR-GCK] gi|315260793|gb|ADT97534.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] Length = 67 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N +KG+GFI P+ ++ DVF+H S ++ +G +L E Q V ++ Q + Sbjct: 3 QGTVKWFNGEKGFGFIAPDDGSK---DVFVHYSEISGSGYRSLEENQRVEFEVEQGN 56 >gi|50085086|ref|YP_046596.1| cold shock-like protein [Acinetobacter sp. ADP1] gi|49531062|emb|CAG68774.1| cold shock-like protein [Acinetobacter sp. ADP1] Length = 69 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KG+GFI +SG DVF H +AS+G L EGQ V++ V Sbjct: 7 GTVKWFNEVKGFGFI----QQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIV 55 >gi|321468514|gb|EFX79498.1| hypothetical protein DAPPUDRAFT_52316 [Daphnia pulex] Length = 147 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N KG+GFITP+ + DVF+H+S + G NL EG+ V + D Sbjct: 1 GRCKWFNVTKGWGFITPD---DGSPDVFVHQSVIRMNGFRNLAEGEEVEMETKDAD 53 >gi|118591841|ref|ZP_01549236.1| cold shock protein [Stappia aggregata IAM 12614] gi|118435484|gb|EAV42130.1| cold shock protein [Stappia aggregata IAM 12614] Length = 286 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++ DKG+GFITP+ E DVF+H SAV +G L GQ V+++ + D GK Sbjct: 205 GTVKFFKNDKGFGFITPD---EGDADVFVHISAVERSGFAGLDSGQRVSFE-TEPDRRGK 260 >gi|1706172|sp|P54584|CSP_ARTGO RecName: Full=Cold shock protein gi|758663|gb|AAB81323.1| cold shock protein [Arthrobacter globiformis] Length = 67 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFITP+ +S DVF+H S + + G L E V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFITPD---DSDGDVFVHYSEIQTGGFKTLDENARVQFEIGQ 54 >gi|222056386|ref|YP_002538748.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] gi|221565675|gb|ACM21647.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] Length = 66 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GF+ E+G+DVF H SA++ G +L EG V ++ + Sbjct: 4 GTVKWFNDSKGFGFL----EQENGEDVFCHFSAISGEGFKSLAEGDRVQFEVTK 53 >gi|312796301|ref|YP_004029223.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] gi|312168076|emb|CBW75079.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] Length = 72 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N KG+GFITP+ G+D+F H S V G L E Q V+Y Sbjct: 9 GIVKWFNDSKGFGFITPDA---GGEDLFAHFSEVTGEGFKTLVENQRVSY 55 >gi|94314735|ref|YP_587944.1| major cold shock protein [Cupriavidus metallidurans CH34] gi|93358587|gb|ABF12675.1| major cold shock protein [Cupriavidus metallidurans CH34] Length = 67 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ GDD+F H S V + G +L E Q V+++ V+N Sbjct: 1 MQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEVRADGFKSLQENQRVSFE-VKNGP 56 Query: 62 NGKYSA 67 G +A Sbjct: 57 KGLQAA 62 >gi|332284619|ref|YP_004416530.1| cold shock-like protein [Pusillimonas sp. T7-7] gi|330428572|gb|AEC19906.1| cold shock-like protein [Pusillimonas sp. T7-7] Length = 69 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI PE G D+F H S + +G +L E Q V+ +V ++ Sbjct: 6 GIVKWFNNDKGFGFIMPE---SGGKDLFAHYSEIQGSGHKSLEENQRVS--FVASEGQKG 60 Query: 65 YSAENLKLV 73 A N+++V Sbjct: 61 PQASNIQVV 69 >gi|227356923|ref|ZP_03841300.1| CspA family cold shock transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227162921|gb|EEI47871.1| CspA family cold shock transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 70 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW++ KG+GFITP + DVF+H SA+ S L EGQ V++ Sbjct: 7 GTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDSFKTLAEGQQVSF 53 >gi|71065502|ref|YP_264229.1| cold-shock DNA-binding protein family protein [Psychrobacter arcticus 273-4] gi|71038487|gb|AAZ18795.1| cold-shock DNA-binding protein family [Psychrobacter arcticus 273-4] Length = 71 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G +KW+N KG+GFI +SG+D+F+H A+ G +L +G+ V + V+ D Sbjct: 5 EQGIVKWFNDSKGFGFI----QRDSGEDIFVHFRAIQGDGYRSLKDGEKVEFSVVEGDKG 60 Query: 63 GKYSAENLKLVPK 75 AE ++ V + Sbjct: 61 --LQAEEVRRVEE 71 >gi|123187095|gb|ABM69256.1| CspA-like protein [Arthrobacter sp. B5] Length = 66 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI + G DVF H SA+ G L EGQ V++ Sbjct: 6 EGTVKWFNEAKGFGFIAQD---NGGQDVFAHYSAIQGGGFKTLAEGQKVSF 53 >gi|91805295|gb|ABE65379.1| CspC [Escherichia coli] Length = 69 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+ FITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 5 KGQVKWFNESKGFRFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60 >gi|317492863|ref|ZP_07951287.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918985|gb|EFV40320.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 70 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+PE ++ DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFDAGKGFGFISPEDGSK---DVFVHFSAIQSNDFKTLDEGQKVEFS-IENGAKG 61 >gi|262278468|ref|ZP_06056253.1| predicted protein [Acinetobacter calcoaceticus RUH2202] gi|299769413|ref|YP_003731439.1| Cold shock-like protein cspG [Acinetobacter sp. DR1] gi|262258819|gb|EEY77552.1| predicted protein [Acinetobacter calcoaceticus RUH2202] gi|298699501|gb|ADI90066.1| Cold shock-like protein cspG [Acinetobacter sp. DR1] Length = 69 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 8/71 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI ++G DVF H ++ +G L EGQ VT+ Q G+ Sbjct: 7 GTVKWFNETKGFGFI----QQDNGPDVFAHFKEISGSGFKTLHEGQRVTFTVTQ----GQ 58 Query: 65 YSAENLKLVPK 75 + ++P+ Sbjct: 59 KGPNAVNIIPQ 69 >gi|167566047|ref|ZP_02358963.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis EO147] gi|167573125|ref|ZP_02365999.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis C6786] Length = 67 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI+P+ GDD+F H S + G L E Q V+++ Sbjct: 4 GTVKWFNDSKGFGFISPD---SGGDDLFAHFSEIRGEGFKTLAENQKVSFE 51 >gi|126668437|ref|ZP_01739394.1| Cold shock protein [Marinobacter sp. ELB17] gi|126627146|gb|EAZ97786.1| Cold shock protein [Marinobacter sp. ELB17] Length = 69 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + E G DVF+H SA+ + G L EGQ V + D Sbjct: 7 GHVKWFNEAKGFGFI----AQEDGSDVFVHFSAINADGFRTLAEGQKVQFTV--TDGPKG 60 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 61 PQAENVTPV 69 >gi|224369441|ref|YP_002603605.1| CspB1 [Desulfobacterium autotrophicum HRM2] gi|223692158|gb|ACN15441.1| CspB1 [Desulfobacterium autotrophicum HRM2] Length = 66 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI E+G DVF+H S + + G +L EG V++D Sbjct: 4 GIVKWFNDSKGFGFI----EQENGKDVFVHHSGINATGFKSLNEGDRVSFD 50 >gi|119469733|ref|ZP_01612602.1| Cold shock protein [Alteromonadales bacterium TW-7] gi|119446980|gb|EAW28251.1| Cold shock protein [Alteromonadales bacterium TW-7] Length = 69 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI ESG DVF H SA++ G L EGQ V + Q + Sbjct: 7 GTVKFFNEAKGFGFI----EQESGPDVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKGPQ 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 --AENI 66 >gi|332295605|ref|YP_004437528.1| cold-shock DNA-binding domain protein [Thermodesulfobium narugense DSM 14796] gi|332178708|gb|AEE14397.1| cold-shock DNA-binding domain protein [Thermodesulfobium narugense DSM 14796] Length = 68 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KGYGFI+ + + DVF+H SA+ G L +GQ V ++ V Sbjct: 4 GKVKWFNNEKGYGFISKD---DGSGDVFVHYSAIQGKGFRTLEQGQAVQFEIV 53 >gi|328542846|ref|YP_004302955.1| cold shock-like transcription regulator protein [polymorphum gilvum SL003B-26A1] gi|326412592|gb|ADZ69655.1| Putative cold shock-like transcription regulator protein [Polymorphum gilvum SL003B-26A1] Length = 250 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++ DKG+GFITP+ DVF+H SAV +G L GQ V+++ + D GK Sbjct: 169 GTVKFFKSDKGFGFITPDNGEA---DVFVHISAVERSGFTTLDSGQRVSFE-TEPDRRGK 224 >gi|239809492|gb|ACS26216.1| unknown [uncultured bacterium] Length = 69 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI E+G DVF+H SA+ AG L EGQ V + Q + Sbjct: 7 GTVKFFNEAKGFGFI----QRENGPDVFVHFSAIQGAGFKTLAEGQKVQFTVGQGQKGPQ 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 --AENV 66 >gi|116696515|ref|YP_842091.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] gi|113531014|emb|CAJ97361.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] Length = 98 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N KG+GFI P+ GDD+F H S + + G +L E Q V ++ V+N Sbjct: 17 IMQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEIRADGFKSLQENQRVQFE-VKNG 72 Query: 61 ANGKYSA 67 G +A Sbjct: 73 PKGLQAA 79 >gi|296135805|ref|YP_003643047.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12] gi|294339970|emb|CAZ88333.1| Cold shock protein [Thiomonas sp. 3As] gi|295795927|gb|ADG30717.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12] Length = 67 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI P+ E G+D+F H S + + G L E Q V + Sbjct: 4 GTVKWFNESKGFGFIKPD---EGGEDLFAHFSEIQAKGFRTLQENQRVEF 50 >gi|197284851|ref|YP_002150723.1| cold shock protein [Proteus mirabilis HI4320] gi|194682338|emb|CAR42146.1| cold shock protein [Proteus mirabilis HI4320] Length = 70 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW++ KG+GFITP + DVF+H SA+ S L EGQ V++ Sbjct: 7 GTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDNFKTLAEGQQVSF 53 >gi|296394808|ref|YP_003659692.1| cold-shock DNA-binding domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181955|gb|ADG98861.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM 44985] Length = 68 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 4/58 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQND 60 +G++KW+N +KG+GFI P+ + G D+F+H S + S G F L E Q V ++ +D Sbjct: 3 QGTVKWFNEEKGFGFIAPD---DGGKDLFVHFSGIVSEGGFRTLQENQRVKFETQASD 57 >gi|226304000|ref|YP_002763958.1| cold shock protein [Rhodococcus erythropolis PR4] gi|229494807|ref|ZP_04388563.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|226183115|dbj|BAH31219.1| probable cold shock protein [Rhodococcus erythropolis PR4] gi|229318303|gb|EEN84168.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI PE + DVF+H S + G L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQRVEFEVGQ 54 >gi|301062851|ref|ZP_07203444.1| cold shock protein CspD [delta proteobacterium NaphS2] gi|300443051|gb|EFK07223.1| cold shock protein CspD [delta proteobacterium NaphS2] Length = 66 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KG+GFI E G DVF+H SA+ G +L EG V++D ++ G Sbjct: 4 GTVKWFSDQKGFGFI----EQEDGPDVFVHHSAILMEGFKSLNEGDQVSFD-IEEGQKGP 58 Query: 65 YSAENLKLV 73 +A N+K++ Sbjct: 59 AAA-NVKVM 66 >gi|289152158|gb|ADC84009.1| cold shock-like protein [Escherichia coli] Length = 69 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ +Q+ G Sbjct: 7 QVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE-IQDGQKG 60 >gi|262279640|ref|ZP_06057425.1| cold-shock DNA-binding domain-containing protein [Acinetobacter calcoaceticus RUH2202] gi|262259991|gb|EEY78724.1| cold-shock DNA-binding domain-containing protein [Acinetobacter calcoaceticus RUH2202] Length = 71 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI T+ G D+F H + + + G L EGQ V + VQ + Sbjct: 6 GTVKWFNETKGFGFIV----TDEGKDIFAHFTDIQTPGFKVLLEGQRVEFTVVQGKKGPQ 61 Query: 65 YSAENLKLVPKS 76 A N+ +V S Sbjct: 62 --ASNIVIVQNS 71 >gi|260779178|ref|ZP_05888070.1| cold shock protein CspD [Vibrio coralliilyticus ATCC BAA-450] gi|260605342|gb|EEX31637.1| cold shock protein CspD [Vibrio coralliilyticus ATCC BAA-450] Length = 73 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI PEG E G DVF H S + G L GQ VT++ Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DVFAHYSTIKMDGYRTLKAGQQVTFE 51 >gi|145221984|ref|YP_001132662.1| cold-shock DNA-binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315446276|ref|YP_004079155.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] gi|145214470|gb|ABP43874.1| cold-shock DNA-binding protein family [Mycobacterium gilvum PYR-GCK] gi|315264579|gb|ADU01321.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KG+GFI PE + DVF+H + + +G L E Q V ++ Q+ Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQS 55 >gi|30062528|ref|NP_836699.1| cold shock protein CspG [Shigella flexneri 2a str. 2457T] gi|56479790|ref|NP_706912.2| cold shock protein CspG [Shigella flexneri 2a str. 301] gi|110805005|ref|YP_688525.1| cold shock protein CspG [Shigella flexneri 5 str. 8401] gi|312971120|ref|ZP_07785299.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|30040774|gb|AAP16505.1| putative cold shock protein [Shigella flexneri 2a str. 2457T] gi|56383341|gb|AAN42619.2| putative cold shock protein [Shigella flexneri 2a str. 301] gi|110614553|gb|ABF03220.1| cold shock-like protein CspG [Shigella flexneri 5 str. 8401] gi|281600354|gb|ADA73338.1| Cold shock-like protein cspG [Shigella flexneri 2002017] gi|310336881|gb|EFQ02048.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|313650757|gb|EFS15158.1| cold shock-like protein cspG [Shigella flexneri 2a str. 2457T] gi|315619077|gb|EFU99658.1| cold shock-like protein cspG [Escherichia coli 3431] gi|323190646|gb|EFZ75916.1| cold shock-like protein cspG [Escherichia coli RN587/1] gi|332762777|gb|EGJ93040.1| cold shock-like protein cspG [Shigella flexneri K-671] gi|332767786|gb|EGJ97977.1| cold shock protein CspG [Shigella flexneri 2930-71] gi|333008663|gb|EGK28129.1| cold shock-like protein cspG [Shigella flexneri K-272] gi|333020008|gb|EGK39279.1| cold shock-like protein cspG [Shigella flexneri K-304] Length = 66 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N DKG+GFITP+ ++ DVF+H +A+ S L E Q V + Q Sbjct: 3 GLVKWFNADKGFGFITPDDGSK---DVFVHFTAIQSNEFRTLNENQKVEFSIEQ 53 >gi|120406346|ref|YP_956175.1| cold-shock DNA-binding domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119959164|gb|ABM16169.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii PYR-1] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KG+GFI PE + DVF+H + + +G L E Q V ++ Q+ Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQS 55 >gi|330875784|gb|EGH09933.1| cold shock domain family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 92 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G + +D+F H SA+ G L GQ V++D +Q Sbjct: 4 GKVKWFNNAKGYGFILEDGKPD--EDLFAHFSAIQMDGYKTLKAGQPVSFDIIQ 55 >gi|330940302|gb|EGH43422.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi str. 1704B] Length = 91 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI EG+ E D+F H SA+ G L GQ V ++ VQ Sbjct: 3 EGKVKWFNNAKGFGFINAEGNDE---DLFAHFSAIEMDGYKTLKAGQKVRFEVVQ 54 >gi|215426134|ref|ZP_03424053.1| cold shock protein B cspB [Mycobacterium tuberculosis T92] Length = 157 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+PDKG+GF++ EG G+DV++ SA+ + G+ L GQ V + A+G+ Sbjct: 4 GKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPT-GVEALKAGQRVEFGI----ASGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|209519137|ref|ZP_03267942.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|209500437|gb|EEA00488.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT S G+D+F H S + S G +L E Q V+++ ++ Sbjct: 1 METGVVKWFNDAKGFGFIT---SDAGGEDLFAHFSEIRSEGFKSLKENQRVSFE-IKTSP 56 Query: 62 NGKYSA 67 GK +A Sbjct: 57 KGKQAA 62 >gi|108801761|ref|YP_641958.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. MCS] gi|118473705|ref|YP_890379.1| hypothetical protein MSMEG_6159 [Mycobacterium smegmatis str. MC2 155] gi|119870912|ref|YP_940864.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. KMS] gi|126437748|ref|YP_001073439.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. JLS] gi|302595677|sp|A0R5E1|CSPA_MYCS2 RecName: Full=Probable cold shock protein A gi|9587215|gb|AAF89211.1|AF281675_1 cold-shock protein CspA [Mycobacterium smegmatis] gi|108772180|gb|ABG10902.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS] gi|118174992|gb|ABK75888.1| conserved domain protein [Mycobacterium smegmatis str. MC2 155] gi|119697001|gb|ABL94074.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS] gi|126237548|gb|ABO00949.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KG+GFI PE + DVF+H + + +G L E Q V ++ Q+ Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQS 55 >gi|311107157|ref|YP_003980010.1| cold-shock DNA-binding domain-containing protein 2 [Achromobacter xylosoxidans A8] gi|310761846|gb|ADP17295.1| cold-shock DNA-binding domain protein 2 [Achromobacter xylosoxidans A8] gi|317405217|gb|EFV85556.1| cold shock-like protein [Achromobacter xylosoxidans C54] Length = 68 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI P+ ++ D+F H S + S G +L E Q VT++ V G Sbjct: 4 GIVKWFNAEKGYGFIMPDDGSK---DLFAHYSEIRSEGYKSLQENQRVTFE-VGTGPKGP 59 Query: 65 YSAENLKLV 73 SA+N+K+ Sbjct: 60 -SAKNIKVA 67 >gi|269836302|ref|YP_003318530.1| cold-shock DNA-binding domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269785565|gb|ACZ37708.1| cold-shock DNA-binding domain protein [Sphaerobacter thermophilus DSM 20745] Length = 77 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 8/52 (15%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KWY+P+KGYGFI + + GD D+F+HRSA++ + L EG V +D Sbjct: 4 GTVKWYDPEKGYGFI----ARDDGDSDLFVHRSAISGS---ELNEGDRVEFD 48 >gi|330958172|gb|EGH58432.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. maculicola str. ES4326] Length = 101 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Query: 2 VHRGSIKWYNPDKGYGFIT-------PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW+N KGYGFI PE GDD+F+H S + G + GQ V + Sbjct: 1 MKEGKVKWFNNAKGYGFINAKVNGKNPEKDEYGGDDLFVHFSTIEMEGYKTIKAGQKVIF 60 Query: 55 DYVQ 58 D ++ Sbjct: 61 DIIE 64 >gi|296166503|ref|ZP_06848934.1| cold shock protein Csp [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898115|gb|EFG77690.1| cold shock protein Csp [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P+G DVF+H S + G +L E Q V ++ Q Sbjct: 3 QGTVKWFNSEKGFGFIAPDGGAA---DVFVHYSEIQGNGYRSLEENQRVEFNVEQ 54 >gi|255319459|ref|ZP_05360673.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] gi|262378517|ref|ZP_06071674.1| cold shock domain-containing protein CspD [Acinetobacter radioresistens SH164] gi|255303399|gb|EET82602.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] gi|262299802|gb|EEY87714.1| cold shock domain-containing protein CspD [Acinetobacter radioresistens SH164] Length = 70 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI G GDDVF+H A+ G +L +GQ V + V+ Sbjct: 6 QGVVKWFNDTKGFGFIQRNG----GDDVFVHFRAIMGEGHRSLRDGQRVEFSVVKGQKG- 60 Query: 64 KYSAENLK 71 + AE ++ Sbjct: 61 -FQAEEVQ 67 >gi|226330479|ref|ZP_03805997.1| hypothetical protein PROPEN_04397 [Proteus penneri ATCC 35198] gi|225201274|gb|EEG83628.1| hypothetical protein PROPEN_04397 [Proteus penneri ATCC 35198] Length = 70 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW++ KG+GFITP + DVF+H SA+ S L EGQ V++ Sbjct: 7 GTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDNFKTLAEGQQVSF 53 >gi|149908417|ref|ZP_01897080.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] gi|149808580|gb|EDM68515.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] Length = 68 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H SA+ S G L E Q V ++ D Sbjct: 6 GTVKWFNETKGFGFI----QQENGPDVFAHFSAIESDGFRTLLENQKVEFNVT--DGQKG 59 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 60 PQAENIVVL 68 >gi|293606144|ref|ZP_06688509.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292815599|gb|EFF74715.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 68 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI P+ ++ D+F H S + S G +L E Q VT++ V G Sbjct: 4 GIVKWFNAEKGYGFIMPDDGSK---DLFAHYSEIRSEGYKSLQENQRVTFE-VGTGPKGP 59 Query: 65 YSAENLKLV 73 SA+N+K+ Sbjct: 60 -SAKNIKVA 67 >gi|148822079|ref|YP_001286833.1| cold shock protein B cspB [Mycobacterium tuberculosis F11] gi|253800107|ref|YP_003033108.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 1435] gi|254231179|ref|ZP_04924506.1| cold shock-like protein B cspB [Mycobacterium tuberculosis C] gi|289555348|ref|ZP_06444558.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 605] gi|289744597|ref|ZP_06503975.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987] gi|298524364|ref|ZP_07011773.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308397434|ref|ZP_07492504.2| putative cold-shock DNA-binding domain protein [Mycobacterium tuberculosis SUMu012] gi|124600238|gb|EAY59248.1| cold shock-like protein B cspB [Mycobacterium tuberculosis C] gi|148720606|gb|ABR05231.1| cold shock protein B cspB [Mycobacterium tuberculosis F11] gi|253321610|gb|ACT26213.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 1435] gi|289439980|gb|EFD22473.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 605] gi|289685125|gb|EFD52613.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987] gi|298494158|gb|EFI29452.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308366919|gb|EFP55770.1| putative cold-shock DNA-binding domain protein [Mycobacterium tuberculosis SUMu012] gi|323720694|gb|EGB29771.1| cold shock protein B cspB [Mycobacterium tuberculosis CDC1551A] gi|328459845|gb|AEB05268.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 4207] Length = 138 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+PDKG+GF++ EG G+DV++ SA+ + G+ L GQ V + A Sbjct: 4 VPTGKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPT-GVEALKAGQRVEFGI----A 54 Query: 62 NGKYSAENLKL 72 +G+ + L L Sbjct: 55 SGRRGPQALSL 65 >gi|163783680|ref|ZP_02178668.1| cold shock protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881085|gb|EDP74601.1| cold shock protein [Hydrogenivirga sp. 128-5-R1-1] Length = 65 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +KW++ DKGYGFIT + ++ DVF+H +A+ G L +GQ V ++ ++ DA G Sbjct: 1 VKWFSKDKGYGFITRD---DNEGDVFVHFTAIQKEGFKTLEQGQRVEFE-IEEDAKG 53 >gi|260768159|ref|ZP_05877093.1| cold shock protein CspD [Vibrio furnissii CIP 102972] gi|260616189|gb|EEX41374.1| cold shock protein CspD [Vibrio furnissii CIP 102972] gi|315179859|gb|ADT86773.1| cold shock-like protein CspD [Vibrio furnissii NCTC 11218] Length = 73 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG E G D+F H S + G L GQ V+Y+ Q Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIKMDGYRTLKAGQQVSYEVEQ 54 >gi|322435626|ref|YP_004217838.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321163353|gb|ADW69058.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 71 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%) Query: 1 MVH-RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M H +G +KW+N KG+GF+ EG DVF H S++ + G +L EG V YD + Sbjct: 1 MAHFKGEVKWFNNAKGFGFLGREGEP----DVFCHYSSIQTDGYKSLKEGDKVEYDVILG 56 Query: 60 D 60 D Sbjct: 57 D 57 >gi|93006301|ref|YP_580738.1| cold-shock DNA-binding domain-containing protein [Psychrobacter cryohalolentis K5] gi|92393979|gb|ABE75254.1| cold-shock DNA-binding protein family [Psychrobacter cryohalolentis K5] Length = 71 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G +KW+N KG+GFI +SG+D+F+H A+ G +L +G+ V + V+ D Sbjct: 5 EQGIVKWFNDSKGFGFI----QRDSGEDIFVHFRAIQGDGYRSLKDGEKVEFSVVEGDKG 60 Query: 63 GKYSAENLKLVPK 75 AE ++ V + Sbjct: 61 --LQAEEVRKVEE 71 >gi|94495604|ref|ZP_01302184.1| cold shock protein [Sphingomonas sp. SKA58] gi|94424992|gb|EAT10013.1| cold shock protein [Sphingomonas sp. SKA58] Length = 153 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + D F+H SAV AG+ L EG + ++ ++ D GK Sbjct: 87 GTVKFFNAMKGFGFIQ---RDDGQPDAFVHISAVERAGMAALNEGDRLDFE-LEVDRRGK 142 Query: 65 YSAENLK 71 Y+A NL+ Sbjct: 143 YAAVNLQ 149 >gi|117926359|ref|YP_866976.1| cold-shock DNA-binding protein family protein [Magnetococcus sp. MC-1] gi|117610115|gb|ABK45570.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1] Length = 70 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KG+GFI +G D F+H SA+ + G +L EGQ V + V Sbjct: 7 GTVKWFNDTKGFGFIERDGGK---GDAFVHHSAINATGFKSLAEGQKVEFTVV 56 >gi|42521032|ref|NP_966947.1| cold-shock domain-contain protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|58698415|ref|ZP_00373326.1| cold-shock domain family protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225630894|ref|YP_002727685.1| cold-shock domain family protein [Wolbachia sp. wRi] gi|225677316|ref|ZP_03788293.1| cold-shock domain family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|42410773|gb|AAS14881.1| cold-shock domain family protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|58535070|gb|EAL59158.1| cold-shock domain family protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225590643|gb|EEH11893.1| cold-shock domain family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225592875|gb|ACN95894.1| cold-shock domain family protein [Wolbachia sp. wRi] Length = 83 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 16/81 (19%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----------NLTEGQLVTY 54 G++KW+N +KGYGFI PEG G DVF+H S + +G+ +G+ V+Y Sbjct: 4 GNVKWFNAEKGYGFIKPEG---KGGDVFVHISTLERSGIRPEALKGENKEKGIKGERVSY 60 Query: 55 DYVQNDA-NG--KYSAENLKL 72 + + NG K SA NL+L Sbjct: 61 EVKEERGRNGEDKKSAINLRL 81 >gi|227355251|ref|ZP_03839653.1| CspA family cold shock transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227164624|gb|EEI49491.1| CspA family cold shock transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 66 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW++ KG+GFITP + DVF+H SA+ S L EGQ V++ Sbjct: 3 GTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDNFKTLAEGQQVSF 49 >gi|62421414|gb|AAX82482.1| cold shock protein [Bacillus thuringiensis serovar kurstaki] Length = 60 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 K +N +KG+GFI EG G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 3 KRFNSEKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN 51 >gi|256391893|ref|YP_003113457.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256358119|gb|ACU71616.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+ +KG+GFI + G DVF H S +++ G L EGQ V ++ Q+ G Sbjct: 4 GTVKWFKAEKGFGFIE---QDDGGPDVFAHFSNISAEGFRELLEGQRVEFEIAQS-PKGP 59 Query: 65 YSAENLKLV 73 + AEN++ + Sbjct: 60 H-AENIRPI 67 >gi|254514074|ref|ZP_05126135.1| cold shock protein [gamma proteobacterium NOR5-3] gi|219676317|gb|EED32682.1| cold shock protein [gamma proteobacterium NOR5-3] Length = 171 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI E+GD++F+H ++ G +L +G V Y V D Sbjct: 108 GTVKWFNGTKGFGFII----RENGDEIFVHHRSIVGEGRRSLRDGAAVKYRVVTTD 159 >gi|322832238|ref|YP_004212265.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|321167439|gb|ADW73138.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] Length = 70 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M+ G +KWYN KGYGFI P +GS+E +++ R+++A+ G +L+ GQ V + ++ Sbjct: 2 MLKMGLVKWYNQAKGYGFICPLDGSSE----IYVQRTSIANTGNKSLSAGQKVEFTTYRS 57 Query: 60 DANGKYSAE 68 +G +A+ Sbjct: 58 VTHGPSAAD 66 >gi|313157470|gb|EFR56889.1| cold shock-like protein CspE [Alistipes sp. HGB5] Length = 66 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW++ KGYGFIT E+G ++F+H S + + G +L EGQ V ++ Sbjct: 3 GKVKWFDSKKGYGFITG----ENGKEIFVHFSGIVTDGFKSLNEGQAVEFE 49 >gi|242239695|ref|YP_002987876.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] gi|242131752|gb|ACS86054.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] Length = 73 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PE + G+D+F H S + G L GQ+V + Q Sbjct: 4 GTVKWFNNAKGFGFICPE---DGGEDIFAHYSTIQMDGYRTLKAGQIVKFTVHQ 54 >gi|330943369|gb|EGH45738.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi str. 1704B] Length = 41 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 29/38 (76%), Gaps = 3/38 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42 G++KW+N +KG+GFITP+G GDD+F+H A+ S G Sbjct: 7 GTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDG 41 >gi|295092996|emb|CBK82087.1| cold-shock DNA-binding protein family [Coprococcus sp. ART55/1] Length = 66 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KGYGFI E G DVF+H SA+ G L EG V Y+ V + Sbjct: 4 GKVKWFNAKKGYGFICD----EDGADVFVHFSALNMEGFKVLEEGDTVEYEVVDGE 55 >gi|307730691|ref|YP_003907915.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1003] gi|323527027|ref|YP_004229180.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1001] gi|307585226|gb|ADN58624.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003] gi|323384029|gb|ADX56120.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT S G+D+F H S + + G +L E Q V++D V+ Sbjct: 1 METGIVKWFNDAKGFGFIT---SDSGGEDLFAHFSEIRTEGFKSLKENQRVSFD-VKAGP 56 Query: 62 NGKYSA 67 GK +A Sbjct: 57 KGKQAA 62 >gi|50955888|ref|YP_063176.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952370|gb|AAT90071.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 5/55 (9%) Query: 5 GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFI P +GS DVF H + + G L E Q V Y+ Q Sbjct: 4 GTVKWFNAEKGYGFIAPDDGSV----DVFAHFREIQTQGFRTLEENQKVEYELTQ 54 >gi|66359918|ref|XP_627137.1| cold shock RNA binding domain of the OB fold [Cryptosporidium parvum Iowa II] gi|46228824|gb|EAK89694.1| cold shock RNA binding domain of the OB fold [Cryptosporidium parvum Iowa II] Length = 135 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G KW++ KG+GFITP+ +E D+F+H+ + G +L + + V Y+ ++ D Sbjct: 9 MPLSGVCKWFDSTKGFGFITPDDGSE---DIFVHQQNIKVEGFRSLAQDERVEYE-IETD 64 Query: 61 ANGKYSAENL 70 G+ A N+ Sbjct: 65 DKGRRKAVNV 74 >gi|289749391|ref|ZP_06508769.1| LOW QUALITY PROTEIN: cold shock protein B cspB [Mycobacterium tuberculosis T92] gi|289689978|gb|EFD57407.1| LOW QUALITY PROTEIN: cold shock protein B cspB [Mycobacterium tuberculosis T92] Length = 136 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+PDKG+GF++ EG G+DV++ SA+ + G+ L GQ V + A+G+ Sbjct: 4 GKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPT-GVEALKAGQRVEFGI----ASGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|209966917|ref|YP_002299832.1| cold shock-like protein CspA [Rhodospirillum centenum SW] gi|209960383|gb|ACJ01020.1| cold shock-like protein CspA [Rhodospirillum centenum SW] Length = 199 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 3/48 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 GS+KW+ DKG+GF+T + + G DVF+H+S + AGL +L G+ V Sbjct: 135 GSVKWFKDDKGFGFVT---TDDGGKDVFVHKSILRRAGLESLQSGERV 179 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 R ++KW+N KG+GF+ P T D FLH S ++ GL +L EG V Sbjct: 44 RATVKWFNGVKGFGFVAPADGTP---DAFLHASVLSRVGLSDLAEGAEV 89 >gi|91223648|ref|ZP_01258913.1| Cold shock protein [Vibrio alginolyticus 12G01] gi|91191734|gb|EAS77998.1| Cold shock protein [Vibrio alginolyticus 12G01] Length = 69 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI S E+GDD+F+H ++ G L EG+ V++ Sbjct: 7 GTVKWFNETKGFGFI----SQENGDDLFVHFRSILGDGFKKLIEGEQVSF 52 >gi|268316772|ref|YP_003290491.1| cold-shock DNA-binding domain-containing protein [Rhodothermus marinus DSM 4252] gi|262334306|gb|ACY48103.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM 4252] Length = 70 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 4/55 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55 + +G++KW++ +KGYGFI +G G+DVF+HR+AVA G L +G+ ++++ Sbjct: 1 MSQGTVKWFSAEKGYGFIQQDG---GGEDVFVHRTAVAGLGYGEELRKGERLSFE 52 >gi|219123826|ref|XP_002182218.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406179|gb|EEC46119.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 286 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 44/69 (63%), Gaps = 2/69 (2%) Query: 4 RGSIKWYNPDKGYGFITPEG-STESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQNDA 61 +G++KW++ KGYGF+ P ++ + +++F+H++++ S G + L E + +D + Sbjct: 5 QGTVKWFDSRKGYGFVAPTSDNSPTAEEIFVHQTSIQSEGAYRTLVENSEIEFDVEKEAE 64 Query: 62 NGKYSAENL 70 +GK+ A N+ Sbjct: 65 SGKFKAINV 73 >gi|268590149|ref|ZP_06124370.1| cold-shock DNA-binding domain protein [Providencia rettgeri DSM 1131] gi|291314424|gb|EFE54877.1| cold-shock DNA-binding domain protein [Providencia rettgeri DSM 1131] Length = 71 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +H G +KW++ +GYGFI+P GDDVF+ ++A+ + +L EGQ V + +N Sbjct: 5 LHMGRVKWFDAKEGYGFISP---FNGGDDVFVTTKSIANKKIKSLFEGQNVEFSVTRN 59 >gi|225022302|ref|ZP_03711494.1| hypothetical protein CORMATOL_02341 [Corynebacterium matruchotii ATCC 33806] gi|224944899|gb|EEG26108.1| hypothetical protein CORMATOL_02341 [Corynebacterium matruchotii ATCC 33806] Length = 73 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI PE + DVF+H S + G L E Q+V ++ V + A G Sbjct: 8 KGAVKWFNAEKGFGFIEPEDGSA---DVFVHYSEINGDGFRYLEENQVVEFE-VGDGAKG 63 Query: 64 KYSAENLKLV 73 A N++++ Sbjct: 64 T-QALNVRVI 72 >gi|299770874|ref|YP_003732900.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1] gi|298700962|gb|ADI91527.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1] Length = 71 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI T+ G D+F H + + + G L EGQ V + VQ Sbjct: 6 GTVKWFNETKGFGFIV----TDEGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQ 55 >gi|225874667|ref|YP_002756126.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] gi|225793793|gb|ACO33883.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] Length = 87 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G+DVF+H SA+ +G L EG+ V ++ Q Sbjct: 24 GVVKWFNGAKGYGFI----QRSTGEDVFVHFSAIQDSGYKTLNEGEAVEFECQQ 73 >gi|194293032|ref|YP_002008939.1| cold shock-like protein [Cupriavidus taiwanensis LMG 19424] gi|193226936|emb|CAQ72887.1| Cold shock-like protein [Cupriavidus taiwanensis LMG 19424] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ GDD+F H S + + G +L E Q V ++ V+N Sbjct: 1 MQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEIRAEGFKSLQENQRVQFE-VKNGP 56 Query: 62 NGKYSA 67 G +A Sbjct: 57 KGLQAA 62 >gi|85859293|ref|YP_461495.1| cold shock protein [Syntrophus aciditrophicus SB] gi|85722384|gb|ABC77327.1| cold shock protein [Syntrophus aciditrophicus SB] Length = 66 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI + G DVF+H S++ AG L E Q V ++ +Q G Sbjct: 3 QGRVKWFNDKKGFGFI----ENDEGGDVFVHFSSIQGAGWKTLNESQRVRFE-IQQGQKG 57 Query: 64 KYSAENLKLV 73 SA N++L+ Sbjct: 58 P-SAVNVELI 66 >gi|84385112|ref|ZP_00988144.1| cold shock DNA-binding domain protein [Vibrio splendidus 12B01] gi|86144296|ref|ZP_01062628.1| cold shock DNA-binding domain protein [Vibrio sp. MED222] gi|218676272|ref|YP_002395091.1| cold shock DNA-binding domain protein [Vibrio splendidus LGP32] gi|84379709|gb|EAP96560.1| cold shock DNA-binding domain protein [Vibrio splendidus 12B01] gi|85837195|gb|EAQ55307.1| cold shock DNA-binding domain protein [Vibrio sp. MED222] gi|218324540|emb|CAV26032.1| cold shock DNA-binding domain protein [Vibrio splendidus LGP32] Length = 69 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI E+G DVF H SA+ G L EGQ V + Q Sbjct: 7 GKVKWFNETKGFGFI----EQENGPDVFAHFSAITGDGFKTLAEGQQVEFTVSQ 56 >gi|300933731|ref|ZP_07148987.1| putative cold shock protein [Corynebacterium resistens DSM 45100] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI PE + DVF+H S + G L E Q V ++ Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQKVEFE 51 >gi|38232941|ref|NP_938708.1| cold-shock protein [Corynebacterium diphtheriae NCTC 13129] gi|38199199|emb|CAE48825.1| cold-shock protein [Corynebacterium diphtheriae] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI PE + DVF+H S + G L E Q V ++ Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQKVEFE 51 >gi|167966659|ref|ZP_02548936.1| cold shock protein B cspB [Mycobacterium tuberculosis H37Ra] Length = 75 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+PDKG+GF++ EG G+DV++ SA+ + G+ LT GQ V + A+G+ Sbjct: 4 GKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPT-GVEALTAGQRVEFGI----ASGR 54 Query: 65 YSAENLKL 72 L L Sbjct: 55 RGPHALSL 62 >gi|145589930|ref|YP_001156527.1| cold-shock DNA-binding domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|171464060|ref|YP_001798173.1| cold-shock DNA-binding domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|145048336|gb|ABP34963.1| cold-shock DNA-binding protein family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|171193598|gb|ACB44559.1| cold-shock DNA-binding domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI P+ E ++F H SA+ G L E Q VT+D Q Sbjct: 4 GIVKWFNDAKGFGFIKPDDGEE---ELFAHFSAITMPGFKTLKENQKVTFDITQ 54 >gi|94500755|ref|ZP_01307284.1| cold-shock DNA-binding domain family protein [Oceanobacter sp. RED65] gi|94427077|gb|EAT12058.1| cold-shock DNA-binding domain family protein [Oceanobacter sp. RED65] Length = 68 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI + E+G DVF H S + G L EGQ V + Q Sbjct: 6 GTVKWFNEAKGFGFI----AQENGPDVFAHFSEIQGEGFKTLAEGQAVEFIVTQGQ 57 >gi|117926184|ref|YP_866801.1| cold-shock DNA-binding protein family protein [Magnetococcus sp. MC-1] gi|117609940|gb|ABK45395.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1] Length = 71 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFI P+ ++ DVF H S ++S +G +L EGQ V ++ D Sbjct: 7 GTVKWFNNDKGFGFIAPDNGSK---DVFAHFSEISSGSGFKSLEEGQKVEFNVEPGDKGP 63 Query: 64 K 64 K Sbjct: 64 K 64 >gi|307721642|ref|YP_003892782.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica DSM 16294] gi|306979735|gb|ADN09770.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica DSM 16294] Length = 72 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 5/61 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG--LFNLTEGQLVTYDYVQN 59 + G++KW+N DKG+GFI E + G DVF+H + G +L EGQ VT++ Q Sbjct: 4 LQNGTVKWFNSDKGFGFIEVE---DGGKDVFVHYRQINDNGHSRVSLDEGQKVTFEIGQG 60 Query: 60 D 60 D Sbjct: 61 D 61 >gi|15608011|ref|NP_215386.1| cold shock-like protein B CspB [Mycobacterium tuberculosis H37Rv] gi|15840284|ref|NP_335321.1| cold-shock domain-contain protein [Mycobacterium tuberculosis CDC1551] gi|31792059|ref|NP_854552.1| cold shock-like protein B CspB [Mycobacterium bovis AF2122/97] gi|121636794|ref|YP_977017.1| putative cold shock-like protein B cspB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660648|ref|YP_001282171.1| cold-shock domain-contain protein [Mycobacterium tuberculosis H37Ra] gi|215402667|ref|ZP_03414848.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987] gi|215410456|ref|ZP_03419264.1| cold shock protein B cspB [Mycobacterium tuberculosis 94_M4241A] gi|215429728|ref|ZP_03427647.1| cold shock protein B cspB [Mycobacterium tuberculosis EAS054] gi|215445010|ref|ZP_03431762.1| cold shock protein B cspB [Mycobacterium tuberculosis T85] gi|218752536|ref|ZP_03531332.1| cold shock protein B cspB [Mycobacterium tuberculosis GM 1503] gi|219556733|ref|ZP_03535809.1| cold shock protein B cspB [Mycobacterium tuberculosis T17] gi|224989265|ref|YP_002643952.1| putative cold shock-like protein B [Mycobacterium bovis BCG str. Tokyo 172] gi|254549847|ref|ZP_05140294.1| cold shock protein B cspB [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199890|ref|ZP_05767381.1| cold shock protein B cspB [Mycobacterium tuberculosis T46] gi|260204068|ref|ZP_05771559.1| cold shock protein B cspB [Mycobacterium tuberculosis K85] gi|289442280|ref|ZP_06432024.1| cold shock protein B cspB [Mycobacterium tuberculosis T46] gi|289568834|ref|ZP_06449061.1| cold shock protein B cspB [Mycobacterium tuberculosis T17] gi|289573493|ref|ZP_06453720.1| cold shock protein B cspB [Mycobacterium tuberculosis K85] gi|289752926|ref|ZP_06512304.1| cold-shock protein B cspB [Mycobacterium tuberculosis EAS054] gi|289756956|ref|ZP_06516334.1| cold shock protein B cspB [Mycobacterium tuberculosis T85] gi|289761002|ref|ZP_06520380.1| cold shock-like protein B cspB [Mycobacterium tuberculosis GM 1503] gi|294996351|ref|ZP_06802042.1| cold shock protein [Mycobacterium tuberculosis 210] gi|297633388|ref|ZP_06951168.1| cold shock protein [Mycobacterium tuberculosis KZN 4207] gi|297730373|ref|ZP_06959491.1| cold shock protein [Mycobacterium tuberculosis KZN R506] gi|306774995|ref|ZP_07413332.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu001] gi|306782090|ref|ZP_07420427.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu002] gi|306783539|ref|ZP_07421861.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu003] gi|306787904|ref|ZP_07426226.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu004] gi|306792245|ref|ZP_07430547.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu005] gi|306796643|ref|ZP_07434945.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu006] gi|306802530|ref|ZP_07439198.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu008] gi|306806712|ref|ZP_07443380.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu007] gi|306966908|ref|ZP_07479569.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu009] gi|306971103|ref|ZP_07483764.1| putative cold-shock DNA-binding domain protein [Mycobacterium tuberculosis SUMu010] gi|307078831|ref|ZP_07488001.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu011] gi|313657699|ref|ZP_07814579.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN V2475] gi|2916930|emb|CAA17677.1| PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB [Mycobacterium tuberculosis H37Rv] gi|13880445|gb|AAK45135.1| cold-shock domain family protein [Mycobacterium tuberculosis CDC1551] gi|31617646|emb|CAD93756.1| PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB [Mycobacterium bovis AF2122/97] gi|121492441|emb|CAL70909.1| Probable cold shock-like protein B cspB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148504800|gb|ABQ72609.1| cold-shock domain family protein [Mycobacterium tuberculosis H37Ra] gi|224772378|dbj|BAH25184.1| putative cold shock-like protein B [Mycobacterium bovis BCG str. Tokyo 172] gi|289415199|gb|EFD12439.1| cold shock protein B cspB [Mycobacterium tuberculosis T46] gi|289537924|gb|EFD42502.1| cold shock protein B cspB [Mycobacterium tuberculosis K85] gi|289542588|gb|EFD46236.1| cold shock protein B cspB [Mycobacterium tuberculosis T17] gi|289693513|gb|EFD60942.1| cold-shock protein B cspB [Mycobacterium tuberculosis EAS054] gi|289708508|gb|EFD72524.1| cold shock-like protein B cspB [Mycobacterium tuberculosis GM 1503] gi|289712520|gb|EFD76532.1| cold shock protein B cspB [Mycobacterium tuberculosis T85] gi|308216490|gb|EFO75889.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu001] gi|308325206|gb|EFP14057.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu002] gi|308331700|gb|EFP20551.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu003] gi|308335465|gb|EFP24316.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu004] gi|308339263|gb|EFP28114.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu005] gi|308342940|gb|EFP31791.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu006] gi|308346825|gb|EFP35676.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu007] gi|308350742|gb|EFP39593.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu008] gi|308355403|gb|EFP44254.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu009] gi|308359355|gb|EFP48206.1| putative cold-shock DNA-binding domain protein [Mycobacterium tuberculosis SUMu010] gi|308363262|gb|EFP52113.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu011] gi|326904909|gb|EGE51842.1| cold shock protein B cspB [Mycobacterium tuberculosis W-148] Length = 135 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+PDKG+GF++ EG G+DV++ SA+ + G+ L GQ V + A+G+ Sbjct: 4 GKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPT-GVEALKAGQRVEFGI----ASGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|152979111|ref|YP_001344740.1| cold-shock DNA-binding domain-containing protein [Actinobacillus succinogenes 130Z] gi|150840834|gb|ABR74805.1| putative cold-shock DNA-binding domain protein [Actinobacillus succinogenes 130Z] Length = 69 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KG+GFI EGS E D+F H S + G +L GQ V ++ + D Sbjct: 4 GVVKWFNNAKGFGFINAEGSDE---DIFAHFSVIEMDGYRSLKAGQKVNFEVIHGD 56 >gi|300782274|ref|YP_003762565.1| cold shock protein CspA [Amycolatopsis mediterranei U32] gi|299791788|gb|ADJ42163.1| cold shock protein CspA [Amycolatopsis mediterranei U32] Length = 67 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFITP+ G DVF+H S + G +L E V ++ Q Sbjct: 3 QGTVKWFNSEKGFGFITPD---NGGGDVFVHYSEIQGNGFKSLEENARVEFEIGQ 54 >gi|90021330|ref|YP_527157.1| cold-shock DNA-binding protein family protein [Saccharophagus degradans 2-40] gi|89950930|gb|ABD80945.1| cold-shock DNA-binding protein family [Saccharophagus degradans 2-40] Length = 89 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 7/76 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ G+D+F H S++ G L GQ VT++ + D Sbjct: 4 GTVKWFNNAKGFGFILPDA---GGEDLFAHYSSIEMEGYRTLKAGQPVTFEIEKGDKG-- 58 Query: 65 YSAENLKL--VPKSSN 78 A+N++ +P++S Sbjct: 59 LHAKNIQCTDLPETSE 74 >gi|68537049|ref|YP_251754.1| putative cold shock protein [Corynebacterium jeikeium K411] gi|260579394|ref|ZP_05847276.1| cold shock protein [Corynebacterium jeikeium ATCC 43734] gi|68264648|emb|CAI38136.1| putative cold shock protein [Corynebacterium jeikeium K411] gi|258602523|gb|EEW15818.1| cold shock protein [Corynebacterium jeikeium ATCC 43734] Length = 67 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI P+ + DVF+H S + +G L E Q V ++ Sbjct: 3 QGTVKWFNAEKGFGFIAPD---DGSSDVFVHYSEIQGSGFRTLEENQKVEFE 51 >gi|325003541|ref|ZP_08124653.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia sp. P1] Length = 67 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI + + G DVF+H SA+ + G L E Q V + Q Sbjct: 3 QGTVKWFNAEKGFGFI---ATDDEGPDVFVHYSAIEANGFRTLEENQRVDFQSSQ 54 >gi|330830328|ref|YP_004393280.1| Cold shock-like protein cspE [Aeromonas veronii B565] gi|328805464|gb|AEB50663.1| Cold shock-like protein cspE [Aeromonas veronii B565] Length = 66 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI E+G DVF+H SA+ G L EGQ V + Q + Sbjct: 4 GTVKFFNETKGFGFI----QQENGPDVFVHFSAIQGNGFRTLAEGQRVQFSVTQGQKGPQ 59 Query: 65 YSAENL 70 AEN+ Sbjct: 60 --AENV 63 >gi|212709797|ref|ZP_03317925.1| hypothetical protein PROVALCAL_00845 [Providencia alcalifaciens DSM 30120] gi|212687608|gb|EEB47136.1| hypothetical protein PROVALCAL_00845 [Providencia alcalifaciens DSM 30120] Length = 71 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +H G +KW++ +GYGFI+P GDD+F+ ++A+ + +L EGQ V + +N Sbjct: 5 LHMGRVKWFDAKEGYGFISPR---NGGDDIFVTTKSLANKKIKSLFEGQNVEFSVTRN 59 >gi|187477996|ref|YP_786020.1| cold shock-like protein [Bordetella avium 197N] gi|115422582|emb|CAJ49107.1| cold shock-like protein [Bordetella avium 197N] Length = 68 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI P+ + G D+F H S + S G +L E Q V+++ + Sbjct: 4 GIVKWFNAEKGYGFILPD---DGGKDLFAHYSEIRSEGYKSLQENQRVSFEIGEGPKGP- 59 Query: 65 YSAENLKLV 73 SA+++K++ Sbjct: 60 -SAKDIKVI 67 >gi|107102143|ref|ZP_01366061.1| hypothetical protein PaerPA_01003193 [Pseudomonas aeruginosa PACS2] Length = 92 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI EG E D+F H SA+ G L GQ V ++ +Q Sbjct: 6 GKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQ 56 >gi|18310224|ref|NP_562158.1| cold shock protein [Clostridium perfringens str. 13] gi|110798743|ref|YP_695895.1| cold shock protein [Clostridium perfringens ATCC 13124] gi|168205487|ref|ZP_02631492.1| cold shock protein [Clostridium perfringens E str. JGS1987] gi|168209633|ref|ZP_02635258.1| cold shock protein [Clostridium perfringens B str. ATCC 3626] gi|168213057|ref|ZP_02638682.1| cold shock protein [Clostridium perfringens CPE str. F4969] gi|168217114|ref|ZP_02642739.1| cold shock protein [Clostridium perfringens NCTC 8239] gi|169343961|ref|ZP_02864952.1| cold shock protein [Clostridium perfringens C str. JGS1495] gi|18144903|dbj|BAB80948.1| cold shock protein [Clostridium perfringens str. 13] gi|110673390|gb|ABG82377.1| cold shock protein [Clostridium perfringens ATCC 13124] gi|169297869|gb|EDS79964.1| cold shock protein [Clostridium perfringens C str. JGS1495] gi|170663060|gb|EDT15743.1| cold shock protein [Clostridium perfringens E str. JGS1987] gi|170712262|gb|EDT24444.1| cold shock protein [Clostridium perfringens B str. ATCC 3626] gi|170715408|gb|EDT27590.1| cold shock protein [Clostridium perfringens CPE str. F4969] gi|182380855|gb|EDT78334.1| cold shock protein [Clostridium perfringens NCTC 8239] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 5/57 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 G +KW+N +KGYGFI S + GDDVF+H S V G +L EG+ V++D + + Sbjct: 6 GIVKWFNQEKGYGFI----SCDEGDDVFVHISQVKEKGPEKDLHEGESVSFDISEGE 58 >gi|197284583|ref|YP_002150455.1| cold shock-like protein [Proteus mirabilis HI4320] gi|227356765|ref|ZP_03841150.1| cold shock family protein [Proteus mirabilis ATCC 29906] gi|194682070|emb|CAR41608.1| cold shock-like protein [Proteus mirabilis HI4320] gi|227163055|gb|EEI47990.1| cold shock family protein [Proteus mirabilis ATCC 29906] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP G+D+F H S++ G L GQ V Y ++ Sbjct: 4 GTVKWFNNAKGFGFITP---AAGGEDIFAHYSSIRMEGYRTLKAGQKVNYSTIK 54 >gi|67602636|ref|XP_666494.1| glycogen debranching enzyme [Cryptosporidium hominis TU502] gi|54657499|gb|EAL36263.1| glycogen debranching enzyme [Cryptosporidium hominis] Length = 127 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G KW++ KG+GFITP+ +E D+F+H+ + G +L + + V Y+ ++ D Sbjct: 1 MPLSGVCKWFDSTKGFGFITPDDGSE---DIFVHQQNIKVEGFRSLAQDERVEYE-IETD 56 Query: 61 ANGKYSAENL 70 G+ A N+ Sbjct: 57 DKGRRKAVNV 66 >gi|260914143|ref|ZP_05920616.1| cold shock domain protein CspD [Pasteurella dagmatis ATCC 43325] gi|260631776|gb|EEX49954.1| cold shock domain protein CspD [Pasteurella dagmatis ATCC 43325] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI+ EGS D+F H S + G +L GQ V ++ V D Sbjct: 4 GVVKWFNNAKGFGFISAEGSDA---DIFAHYSVIEMEGYRSLKAGQKVQFEVVHGDKG-- 58 Query: 65 YSAENLKLVP 74 + K+VP Sbjct: 59 --SHATKIVP 66 >gi|291616885|ref|YP_003519627.1| CspD [Pantoea ananatis LMG 20103] gi|291151915|gb|ADD76499.1| CspD [Pantoea ananatis LMG 20103] gi|327393313|dbj|BAK10735.1| cold shock-like protein CspD [Pantoea ananatis AJ13355] Length = 100 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI P G G+D+F H S + G L GQ V +D Q Sbjct: 30 GTVKWFNNAKGFGFICPIG---GGEDIFAHYSTIQMDGYRTLKAGQQVHFDVHQ 80 >gi|78777701|ref|YP_394016.1| cold-shock DNA-binding domain-containing protein [Sulfurimonas denitrificans DSM 1251] gi|78498241|gb|ABB44781.1| cold-shock DNA-binding protein family [Sulfurimonas denitrificans DSM 1251] Length = 72 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV--ASAGLFNLTEGQLVTYD 55 GS+KW+N +KGYGFI E G DVF+H V G +L+EGQ VT++ Sbjct: 7 GSVKWFNEEKGYGFIQQE---NGGKDVFVHFRQVNRTGPGRVSLSEGQKVTFE 56 >gi|322832164|ref|YP_004212191.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|321167365|gb|ADW73064.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] Length = 73 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++KW+N KG+GFI P+ G+D+F H S + G L GQ V +D Sbjct: 1 MQTGTVKWFNNAKGFGFICPQ---NGGEDIFAHYSTIQMEGYRTLKAGQQVNFD 51 >gi|152988646|ref|YP_001347949.1| cold shock domain-containing protein CspD [Pseudomonas aeruginosa PA7] gi|150963804|gb|ABR85829.1| cold shock domain protein CspD [Pseudomonas aeruginosa PA7] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI EG E D+F H SA+ G L GQ V ++ +Q Sbjct: 4 GKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQ 54 >gi|320333865|ref|YP_004170576.1| cold-shock DNA-binding domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319755154|gb|ADV66911.1| cold-shock DNA-binding domain protein [Deinococcus maricopensis DSM 21211] Length = 86 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 7/75 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI GS DVF H SA+ G L EG V +D + Sbjct: 4 GKVKWFNAEKGFGFIEVAGSP----DVFAHFSAIKGTGFKKLNEGDEVEFDIEEGQRGKG 59 Query: 65 YSAENL---KLVPKS 76 A N+ K P+S Sbjct: 60 PQAANIVVTKAAPES 74 >gi|187925052|ref|YP_001896694.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|187716246|gb|ACD17470.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] Length = 67 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + + G +L E Q V++D V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDSGGEDLFAHFSEIRAEGFKSLKENQRVSFD-VKAGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|190014803|ref|YP_001967567.1| orf_Bo170 [Agrobacterium tumefaciens] gi|71849606|gb|AAZ50554.1| orf_Bo170 [Agrobacterium tumefaciens] Length = 100 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ K +GFITP+ + G DVFLH S++A L G + Y Q GK Sbjct: 4 GKVKWFDAAKRFGFITPD---DGGPDVFLHLSSIADPACPTLQPGLRLHYGVQQK--GGK 58 Query: 65 YSAENLKLVP 74 +A+++ VP Sbjct: 59 VTAKDVGPVP 68 >gi|148379362|ref|YP_001253903.1| major cold shock protein [Clostridium botulinum A str. ATCC 3502] gi|153931072|ref|YP_001383738.1| major cold shock protein [Clostridium botulinum A str. ATCC 19397] gi|153936819|ref|YP_001387287.1| major cold shock protein [Clostridium botulinum A str. Hall] gi|153940797|ref|YP_001390748.1| major cold shock protein [Clostridium botulinum F str. Langeland] gi|168180058|ref|ZP_02614722.1| major cold shock protein [Clostridium botulinum NCTC 2916] gi|170756947|ref|YP_001781039.1| major cold shock protein [Clostridium botulinum B1 str. Okra] gi|170760431|ref|YP_001786775.1| major cold shock protein [Clostridium botulinum A3 str. Loch Maree] gi|226948665|ref|YP_002803756.1| major cold shock protein [Clostridium botulinum A2 str. Kyoto] gi|148288846|emb|CAL82930.1| cold shock protein [Clostridium botulinum A str. ATCC 3502] gi|152927116|gb|ABS32616.1| major cold shock protein CspA [Clostridium botulinum A str. ATCC 19397] gi|152932733|gb|ABS38232.1| major cold shock protein CspA [Clostridium botulinum A str. Hall] gi|152936693|gb|ABS42191.1| major cold shock protein [Clostridium botulinum F str. Langeland] gi|169122159|gb|ACA45995.1| major cold shock protein CspA [Clostridium botulinum B1 str. Okra] gi|169407420|gb|ACA55831.1| major cold shock protein CspA [Clostridium botulinum A3 str. Loch Maree] gi|182669023|gb|EDT80999.1| major cold shock protein [Clostridium botulinum NCTC 2916] gi|226843516|gb|ACO86182.1| major cold shock protein [Clostridium botulinum A2 str. Kyoto] gi|295318821|gb|ADF99198.1| major cold shock protein [Clostridium botulinum F str. 230613] Length = 67 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI EG DVF+H SA+ NL EGQ V ++ V+ G Sbjct: 4 GTVKWFNSEKGFGFIEVEGEK----DVFVHFSAIQGDEPRKNLEEGQKVQFE-VEEGQKG 58 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 59 PQAANVIKL 67 >gi|15233440|ref|NP_195326.1| CSDP1 (cold shock domain protein 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding [Arabidopsis thaliana] gi|3036806|emb|CAA18496.1| glycine-rich protein [Arabidopsis thaliana] gi|7270554|emb|CAB81511.1| glycine-rich protein [Arabidopsis thaliana] gi|110741941|dbj|BAE98911.1| glycine-rich protein [Arabidopsis thaliana] gi|332661203|gb|AEE86603.1| cellular nucleic acid-binding protein [Arabidopsis thaliana] Length = 299 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 6/67 (8%) Query: 5 GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + W+N KGYGFITP +GS E +F+H+S++ S G +LT G V + Q ++G Sbjct: 13 GKVNWFNASKGYGFITPDDGSVE----LFVHQSSIVSEGYRSLTVGDAVEFAITQG-SDG 67 Query: 64 KYSAENL 70 K A N+ Sbjct: 68 KTKAVNV 74 >gi|15641155|ref|NP_230787.1| cold shock-like protein CspD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587431|ref|ZP_01677200.1| cold shock-like protein CspD [Vibrio cholerae 2740-80] gi|121726283|ref|ZP_01679573.1| cold shock-like protein CspD [Vibrio cholerae V52] gi|147674134|ref|YP_001216662.1| cold shock-like protein CspD [Vibrio cholerae O395] gi|153214227|ref|ZP_01949262.1| cold shock-like protein CspD [Vibrio cholerae 1587] gi|153802582|ref|ZP_01957168.1| cold shock-like protein CspD [Vibrio cholerae MZO-3] gi|153816958|ref|ZP_01969625.1| cold shock-like protein CspD [Vibrio cholerae NCTC 8457] gi|153822008|ref|ZP_01974675.1| cold shock-like protein CspD [Vibrio cholerae B33] gi|153826040|ref|ZP_01978707.1| cold shock-like protein CspD [Vibrio cholerae MZO-2] gi|153828664|ref|ZP_01981331.1| cold shock-like protein CspD [Vibrio cholerae 623-39] gi|227081315|ref|YP_002809866.1| cold shock-like protein CspD [Vibrio cholerae M66-2] gi|254291567|ref|ZP_04962357.1| cold shock-like protein CspD [Vibrio cholerae AM-19226] gi|254848270|ref|ZP_05237620.1| cold shock-like protein CspD [Vibrio cholerae MO10] gi|297578744|ref|ZP_06940672.1| predicted protein [Vibrio cholerae RC385] gi|298498753|ref|ZP_07008560.1| cold shock domain-containing protein CspD [Vibrio cholerae MAK 757] gi|20138015|sp|Q9KSW4|CSPD_VIBCH RecName: Full=Cold shock-like protein CspD gi|9655615|gb|AAF94301.1| cold shock-like protein CspD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548351|gb|EAX58415.1| cold shock-like protein CspD [Vibrio cholerae 2740-80] gi|121631229|gb|EAX63602.1| cold shock-like protein CspD [Vibrio cholerae V52] gi|124115476|gb|EAY34296.1| cold shock-like protein CspD [Vibrio cholerae 1587] gi|124121896|gb|EAY40639.1| cold shock-like protein CspD [Vibrio cholerae MZO-3] gi|126512545|gb|EAZ75139.1| cold shock-like protein CspD [Vibrio cholerae NCTC 8457] gi|126520473|gb|EAZ77696.1| cold shock-like protein CspD [Vibrio cholerae B33] gi|146316017|gb|ABQ20556.1| cold shock-like protein CspD [Vibrio cholerae O395] gi|148875817|gb|EDL73952.1| cold shock-like protein CspD [Vibrio cholerae 623-39] gi|149740260|gb|EDM54407.1| cold shock-like protein CspD [Vibrio cholerae MZO-2] gi|150422519|gb|EDN14476.1| cold shock-like protein CspD [Vibrio cholerae AM-19226] gi|227009203|gb|ACP05415.1| cold shock-like protein CspD [Vibrio cholerae M66-2] gi|227013009|gb|ACP09219.1| cold shock-like protein CspD [Vibrio cholerae O395] gi|254843975|gb|EET22389.1| cold shock-like protein CspD [Vibrio cholerae MO10] gi|297536338|gb|EFH75171.1| predicted protein [Vibrio cholerae RC385] gi|297543086|gb|EFH79136.1| cold shock domain-containing protein CspD [Vibrio cholerae MAK 757] Length = 76 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG E G D+F H S + G L GQ V+Y Q Sbjct: 7 GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMDGYRTLKAGQQVSYQVEQ 57 >gi|302875711|ref|YP_003844344.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|307689143|ref|ZP_07631589.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|302578568|gb|ADL52580.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans 743B] Length = 68 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI EG +DVF+H SA+ S + NL EG+ V ++ V+ G Sbjct: 4 GTVKWFNQEKGFGFIEVEGE----NDVFVHFSAIQSDSPRKNLEEGEKVEFE-VEQGPKG 58 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 59 LQAANVVKL 67 >gi|254241055|ref|ZP_04934377.1| cold-shock protein CspD [Pseudomonas aeruginosa 2192] gi|126194433|gb|EAZ58496.1| cold-shock protein CspD [Pseudomonas aeruginosa 2192] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI EG E D+F H SA+ G L GQ V ++ +Q Sbjct: 4 GKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQ 54 >gi|15597818|ref|NP_251312.1| cold-shock protein CspD [Pseudomonas aeruginosa PAO1] gi|116050609|ref|YP_790572.1| cold-shock protein CspD [Pseudomonas aeruginosa UCBPP-PA14] gi|218891217|ref|YP_002440083.1| cold-shock protein CspD [Pseudomonas aeruginosa LESB58] gi|254235608|ref|ZP_04928931.1| cold-shock protein CspD [Pseudomonas aeruginosa C3719] gi|296388918|ref|ZP_06878393.1| cold-shock protein CspD [Pseudomonas aeruginosa PAb1] gi|313107659|ref|ZP_07793842.1| cold-shock protein CspD [Pseudomonas aeruginosa 39016] gi|9948689|gb|AAG06010.1|AE004691_1 cold-shock protein CspD [Pseudomonas aeruginosa PAO1] gi|115585830|gb|ABJ11845.1| cold-shock protein CspD [Pseudomonas aeruginosa UCBPP-PA14] gi|126167539|gb|EAZ53050.1| cold-shock protein CspD [Pseudomonas aeruginosa C3719] gi|218771442|emb|CAW27209.1| cold-shock protein CspD [Pseudomonas aeruginosa LESB58] gi|310880344|gb|EFQ38938.1| cold-shock protein CspD [Pseudomonas aeruginosa 39016] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI EG E D+F H SA+ G L GQ V ++ +Q Sbjct: 4 GKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQ 54 >gi|311695726|gb|ADP98599.1| cold shock, CspA [marine bacterium HP15] Length = 68 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++K++N KG+GFIT EG G DVF+H S + G L EGQ V + Q Sbjct: 6 GNVKFFNEAKGFGFITREG----GADVFVHYSNIQGGGFKTLAEGQEVEFTVTQ 55 >gi|288959293|ref|YP_003449634.1| cold shock protein [Azospirillum sp. B510] gi|288911601|dbj|BAI73090.1| cold shock protein [Azospirillum sp. B510] Length = 245 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KGYGF P+ + G DVF+ A+ SAGL L +GQ V Q + Sbjct: 182 GTVKWFNGGKGYGFAQPD---DGGRDVFIPARALESAGLRGLDDGQRVRMTVRQTE 234 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 ++KW+NP++GYGF+ +SG D L S V AG L +G V D V++ Sbjct: 23 TVKWFNPERGYGFVK---VGDSGKDALLPASIVVPAGHTTLPDGATVVVDIVED 73 >gi|148652578|ref|YP_001279671.1| cold-shock DNA-binding domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571662|gb|ABQ93721.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1] Length = 71 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 4/52 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW+N KG+GFI ESG+D+F+H A+ G +L +GQ V + Sbjct: 5 EQGTVKWFNDAKGFGFI----QRESGEDIFVHFRAIQGDGYRSLQDGQKVEF 52 >gi|332978230|gb|EGK14961.1| cold shock protein CspA [Psychrobacter sp. 1501(2011)] Length = 71 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 4/52 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++KW+N KG+GFI ESG+D+F+H A+ G +L +GQ V + Sbjct: 5 EQGTVKWFNDAKGFGFI----QRESGEDIFVHFRAIQGDGYRSLQDGQKVEF 52 >gi|330937547|gb|EGH41489.1| cold shock protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 40 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 29/38 (76%), Gaps = 4/38 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42 G++KW+N +KG+GFITP +SGDD+F+H A+ S G Sbjct: 7 GTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDG 40 >gi|168184293|ref|ZP_02618957.1| major cold shock protein [Clostridium botulinum Bf] gi|187779961|ref|ZP_02996434.1| hypothetical protein CLOSPO_03557 [Clostridium sporogenes ATCC 15579] gi|237794738|ref|YP_002862290.1| major cold shock protein CspA [Clostridium botulinum Ba4 str. 657] gi|182672649|gb|EDT84610.1| major cold shock protein [Clostridium botulinum Bf] gi|187773586|gb|EDU37388.1| hypothetical protein CLOSPO_03557 [Clostridium sporogenes ATCC 15579] gi|229263133|gb|ACQ54166.1| major cold shock protein CspA [Clostridium botulinum Ba4 str. 657] Length = 67 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI EG DVF+H SA+ NL EGQ V ++ V+ G Sbjct: 4 GTVKWFNSEKGFGFIEVEGEK----DVFVHFSAIQGDEPRKNLEEGQKVEFE-VEEGQKG 58 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 59 PQAANVIKL 67 >gi|148977558|ref|ZP_01814137.1| cold shock-like protein CspD [Vibrionales bacterium SWAT-3] gi|145963209|gb|EDK28476.1| cold shock-like protein CspD [Vibrionales bacterium SWAT-3] Length = 73 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PEG E G D+F H S + G L GQ V Y+ V++ G Sbjct: 4 GTVKWFNNAKGFGFICPEG--EEG-DIFAHYSTIQMEGYRTLKAGQQVDYE-VESGPKGS 59 Query: 65 YSA 67 +++ Sbjct: 60 HAS 62 >gi|85710988|ref|ZP_01042049.1| Cold shock protein [Idiomarina baltica OS145] gi|85695392|gb|EAQ33329.1| Cold shock protein [Idiomarina baltica OS145] Length = 68 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +K++N KG+GFI E+G DVF+H SA+ + G L EGQ V++ Q Sbjct: 6 GKVKFFNEAKGFGFI----EQENGADVFVHFSAIQADGFKTLAEGQQVSFTVAQ 55 >gi|154508286|ref|ZP_02043928.1| hypothetical protein ACTODO_00782 [Actinomyces odontolyticus ATCC 17982] gi|293194037|ref|ZP_06609919.1| putative cold shock protein [Actinomyces odontolyticus F0309] gi|153797920|gb|EDN80340.1| hypothetical protein ACTODO_00782 [Actinomyces odontolyticus ATCC 17982] gi|292819791|gb|EFF78800.1| putative cold shock protein [Actinomyces odontolyticus F0309] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 4/55 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRS-AVASAGLFNLTEGQLVTYDYVQ 58 G+IKW+N KG+GFITP+ ESG DVF+H S + +G L EG+ V Y+ ++ Sbjct: 4 GTIKWFNDAKGFGFITPD--DESG-DVFVHYSNIIGQSGRRTLLEGEKVEYEAIE 55 >gi|262369668|ref|ZP_06062996.1| cold-shock domain-containing protein [Acinetobacter johnsonii SH046] gi|262315736|gb|EEY96775.1| cold-shock domain-containing protein [Acinetobacter johnsonii SH046] Length = 70 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI G GDDVF+H A+ G +L +GQ V + V+ Sbjct: 6 QGVVKWFNDTKGFGFIQRNG----GDDVFVHFRAIQGDGHRSLRDGQRVEFSVVKGQKG- 60 Query: 64 KYSAENLK 71 + AE ++ Sbjct: 61 -FQAEEVQ 67 >gi|219855908|ref|YP_002473030.1| hypothetical protein CKR_2565 [Clostridium kluyveri NBRC 12016] gi|219569632|dbj|BAH07616.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 66 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N +KG+G IT E G D+F H S + S G L EGQ V++D Sbjct: 15 LIWTGTVKWFNGNKGFGSITGE----DGKDIFAHFSQINSEGYKTLGEGQKVSFD 65 >gi|254458182|ref|ZP_05071608.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales bacterium GD 1] gi|207085018|gb|EDZ62304.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales bacterium GD 1] Length = 72 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV--ASAGLFNLTEGQLVTYD 55 GS+KW+N +KGYGFI + G DVF+H V G +L EGQ VTY+ Sbjct: 7 GSVKWFNEEKGYGFIQQD---NGGQDVFVHFRQVNHTGGGRVSLAEGQKVTYE 56 >gi|251791888|ref|YP_003006608.1| cold-shock DNA-binding domain-containing protein [Aggregatibacter aphrophilus NJ8700] gi|247533275|gb|ACS96521.1| cold-shock DNA-binding domain protein [Aggregatibacter aphrophilus NJ8700] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P T+ DVF+H S + L EG V Y+ VQ+ G Sbjct: 6 GTVKWFNSTKGFGFIAPADGTK---DVFVHFSGIVGNNFRTLNEGDRVAYN-VQDSQRGP 61 Query: 65 YSAE 68 + E Sbjct: 62 TAVE 65 >gi|303289687|ref|XP_003064131.1| highly cold-shock DNA binding protein [Micromonas pusilla CCMP1545] gi|226454447|gb|EEH51753.1| highly cold-shock DNA binding protein [Micromonas pusilla CCMP1545] Length = 325 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 5/58 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 D+G+GFITP+G G+DVF H SA+ + L+EG V YD +D GK AEN+ Sbjct: 84 DRGFGFITPDG---GGEDVFCHFSAIKDGNM--LSEGSRVDYDESFDDRKGKPRAENV 136 >gi|71083183|ref|YP_265902.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1062] gi|91762387|ref|ZP_01264352.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1002] gi|71062296|gb|AAZ21299.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1062] gi|91718189|gb|EAS84839.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1002] Length = 70 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E + D F+H SAV +AG+ L EG + ++ D Sbjct: 5 KGTVKWFNGKKGFGFIEREDKEK---DAFVHASAVKTAGMRFLNEGDKLEFE--MEDGPK 59 Query: 64 KYSAENLKLV 73 SA NLK + Sbjct: 60 GPSAVNLKKI 69 >gi|262376304|ref|ZP_06069534.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] gi|262308905|gb|EEY90038.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] Length = 71 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI G GDDVF+H A+ G +L +GQ V + V+ Sbjct: 7 QGVVKWFNDTKGFGFIQRNG----GDDVFVHFRAIQGDGHRSLRDGQRVEFSVVKGQKG- 61 Query: 64 KYSAENLK 71 + AE ++ Sbjct: 62 -FQAEEVQ 68 >gi|229505263|ref|ZP_04394773.1| cold shock protein CspD [Vibrio cholerae BX 330286] gi|229511067|ref|ZP_04400546.1| cold shock protein CspD [Vibrio cholerae B33] gi|229515525|ref|ZP_04404984.1| cold shock protein CspD [Vibrio cholerae TMA 21] gi|229518187|ref|ZP_04407631.1| cold shock protein CspD [Vibrio cholerae RC9] gi|229520428|ref|ZP_04409853.1| cold shock protein CspD [Vibrio cholerae TM 11079-80] gi|229525753|ref|ZP_04415158.1| cold shock protein CspD [Vibrio cholerae bv. albensis VL426] gi|229529769|ref|ZP_04419159.1| cold shock protein CspD [Vibrio cholerae 12129(1)] gi|229608282|ref|YP_002878930.1| cold shock protein CspD [Vibrio cholerae MJ-1236] gi|255745554|ref|ZP_05419502.1| cold shock protein CspD [Vibrio cholera CIRS 101] gi|262158372|ref|ZP_06029488.1| cold shock protein CspD [Vibrio cholerae INDRE 91/1] gi|262170184|ref|ZP_06037872.1| cold shock protein CspD [Vibrio cholerae RC27] gi|229333543|gb|EEN99029.1| cold shock protein CspD [Vibrio cholerae 12129(1)] gi|229339334|gb|EEO04351.1| cold shock protein CspD [Vibrio cholerae bv. albensis VL426] gi|229342526|gb|EEO07519.1| cold shock protein CspD [Vibrio cholerae TM 11079-80] gi|229344902|gb|EEO09876.1| cold shock protein CspD [Vibrio cholerae RC9] gi|229347294|gb|EEO12254.1| cold shock protein CspD [Vibrio cholerae TMA 21] gi|229351032|gb|EEO15973.1| cold shock protein CspD [Vibrio cholerae B33] gi|229357486|gb|EEO22403.1| cold shock protein CspD [Vibrio cholerae BX 330286] gi|229370937|gb|ACQ61360.1| cold shock protein CspD [Vibrio cholerae MJ-1236] gi|255736629|gb|EET92026.1| cold shock protein CspD [Vibrio cholera CIRS 101] gi|262021353|gb|EEY40066.1| cold shock protein CspD [Vibrio cholerae RC27] gi|262029813|gb|EEY48461.1| cold shock protein CspD [Vibrio cholerae INDRE 91/1] gi|327483846|gb|AEA78253.1| Cold shock protein CspD [Vibrio cholerae LMA3894-4] Length = 73 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG E G D+F H S + G L GQ V+Y Q Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMDGYRTLKAGQQVSYQVEQ 54 >gi|15827003|ref|NP_301266.1| cold shock protein [Mycobacterium leprae TN] gi|118619394|ref|YP_907726.1| cold shock protein A CspA_1 [Mycobacterium ulcerans Agy99] gi|183985108|ref|YP_001853399.1| cold shock protein A CspA_1 [Mycobacterium marinum M] gi|221229481|ref|YP_002502897.1| putative cold shock protein [Mycobacterium leprae Br4923] gi|296166704|ref|ZP_06849129.1| cold shock protein CspA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|3097243|emb|CAA18820.1| small cold-shock protein [Mycobacterium leprae] gi|13092550|emb|CAC29706.1| putative cold shock protein [Mycobacterium leprae] gi|118571504|gb|ABL06255.1| cold shock protein A CspA_1 [Mycobacterium ulcerans Agy99] gi|183178434|gb|ACC43544.1| cold shock protein A CspA_1 [Mycobacterium marinum M] gi|219932588|emb|CAR70291.1| putative cold shock protein [Mycobacterium leprae Br4923] gi|295897969|gb|EFG77550.1| cold shock protein CspA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 67 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI PE + DVF+H + + +G L E Q V ++ Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFE 51 >gi|240173035|ref|ZP_04751693.1| putative cold shock protein A [Mycobacterium kansasii ATCC 12478] gi|254821833|ref|ZP_05226834.1| putative cold shock protein A [Mycobacterium intracellulare ATCC 13950] Length = 67 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI PE + DVF+H + + +G L E Q V ++ Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFE 51 >gi|71737155|ref|YP_275269.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557708|gb|AAZ36919.1| cold shock domain protein CspD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 94 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G + DD+F H S + G L GQ V+++ +Q Sbjct: 6 GKVKWFNNAKGYGFIIKDGKPD--DDLFAHFSTIQMEGYKTLKAGQPVSFEIIQ 57 >gi|2493772|sp|P72191|TAPA_PSEFR RecName: Full=Temperature acclimation protein A; AltName: Full=E7.0 gi|1513084|gb|AAC45999.1| temperature acclimation protein A [Pseudomonas fragi] Length = 59 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 4/49 (8%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 1 FNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQ 45 >gi|261210697|ref|ZP_05924989.1| cold shock protein CspD [Vibrio sp. RC341] gi|260840182|gb|EEX66762.1| cold shock protein CspD [Vibrio sp. RC341] Length = 73 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG E G D+F H S + G L GQ V+Y Q Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMDGYRTLKAGQQVSYQVEQ 54 >gi|154248094|ref|YP_001419052.1| cold-shock DNA-binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154162179|gb|ABS69395.1| putative cold-shock DNA-binding domain protein [Xanthobacter autotrophicus Py2] Length = 192 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GSIKW++ KGYGFI P+ + G DV +H + + G EG V + VQ A G+ Sbjct: 31 GSIKWFDASKGYGFIVPD---DGGPDVLVHVTCLRRDGFQTAMEGARVVCEAVQR-AKGR 86 Query: 65 YSAENLKL 72 + L L Sbjct: 87 QAFRVLSL 94 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +G+GF+T T D+F+H + GL L GQ V Y D G Sbjct: 123 TVKWFNRLRGFGFLTQGDGTP---DIFVHMETLRRHGLTELRPGQTVMVRYGDGD-KGLM 178 Query: 66 SAE 68 +AE Sbjct: 179 AAE 181 >gi|260185766|ref|ZP_05763240.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A] gi|289446436|ref|ZP_06436180.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A] gi|289419394|gb|EFD16595.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A] Length = 135 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+PDKG+GF++ EG G+DV++ SA+ + G+ L GQ V + A+G+ Sbjct: 4 GKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPT-GVEALKAGQRVEFGI----ASGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|254455833|ref|ZP_05069262.1| 'Cold-shock' DNA-binding domain, putative [Candidatus Pelagibacter sp. HTCC7211] gi|207082835|gb|EDZ60261.1| 'Cold-shock' DNA-binding domain, putative [Candidatus Pelagibacter sp. HTCC7211] Length = 70 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKWYN KGYGFI + + D F+H SAV +AG+ L EG + ++ D Sbjct: 6 GKIKWYNGKKGYGFIERDDKEK---DAFVHASAVKAAGMRYLNEGDKL--EFTLEDGPKG 60 Query: 65 YSAENLKLV 73 SA NLK V Sbjct: 61 PSAVNLKKV 69 >gi|71278403|ref|YP_271177.1| cold shock DNA-binding domain-containing protein [Colwellia psychrerythraea 34H] gi|71144143|gb|AAZ24616.1| cold-shock DNA-binding domain family protein [Colwellia psychrerythraea 34H] Length = 68 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E+G DVF H +A+ G L EGQ V ++ D Sbjct: 6 GTVKWFNEAKGFGFI----EQENGPDVFAHFNAIVGDGFKTLAEGQKV--EFTVTDGQKG 59 Query: 65 YSAENL 70 AEN+ Sbjct: 60 PQAENI 65 >gi|307944227|ref|ZP_07659568.1| putative cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4] gi|307772573|gb|EFO31793.1| putative cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4] Length = 289 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +K++ DKG+GFITP+ E DVF+H SAV +G+ L GQ V+++ + D Sbjct: 211 QNGIVKFFKSDKGFGFITPD---EGDADVFVHISAVERSGMTTLDSGQRVSFE-TEPDRR 266 Query: 63 GK 64 GK Sbjct: 267 GK 268 >gi|294508964|ref|YP_003565853.1| Cold-shock DNA-binding domain protein [Bacillus megaterium QM B1551] gi|294352268|gb|ADE72590.1| Cold-shock DNA-binding domain protein [Bacillus megaterium QM B1551] Length = 76 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 10/59 (16%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLF--NLTEGQLVTYDYV 57 G++KW+N +KG+GFITP E+G D+F+H +A+ + G+ +L EGQ VT+ V Sbjct: 7 GTVKWFNHEKGFGFITP----ENGPDLFVHFTAIERTKGTEGVVIKSLKEGQKVTFVVV 61 >gi|258621691|ref|ZP_05716722.1| cold shock-like protein CspD [Vibrio mimicus VM573] gi|258626362|ref|ZP_05721209.1| cold shock-like protein CspD [Vibrio mimicus VM603] gi|262171824|ref|ZP_06039502.1| cold shock protein CspD [Vibrio mimicus MB-451] gi|262402499|ref|ZP_06079060.1| cold shock protein CspD [Vibrio sp. RC586] gi|258581414|gb|EEW06316.1| cold shock-like protein CspD [Vibrio mimicus VM603] gi|258585922|gb|EEW10640.1| cold shock-like protein CspD [Vibrio mimicus VM573] gi|261892900|gb|EEY38886.1| cold shock protein CspD [Vibrio mimicus MB-451] gi|262351281|gb|EEZ00414.1| cold shock protein CspD [Vibrio sp. RC586] Length = 73 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PEG E G D+F H S + G L GQ V+Y Q Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMDGYRTLKAGQQVSYQVEQ 54 >gi|295115086|emb|CBL35933.1| cold-shock DNA-binding protein family [butyrate-producing bacterium SM4/1] Length = 76 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N +G+GF+ E E F+H S + G L EGQ VT++ + D Sbjct: 1 MRVKGTVKWFNARRGFGFVCDEDGLEH----FVHYSQIQMEGFKRLGEGQSVTFE-IGED 55 Query: 61 ANGKYSAENLKLVPKSS 77 G+ A L+++P+ Sbjct: 56 EKGRSVA--LEVIPEEQ 70 >gi|111017609|ref|YP_700581.1| cold shock protein [Rhodococcus jostii RHA1] gi|111025401|ref|YP_707821.1| CspA family cold-shock protein [Rhodococcus jostii RHA1] gi|110817139|gb|ABG92423.1| cold shock protein [Rhodococcus jostii RHA1] gi|110824380|gb|ABG99663.1| cold-shock protein, CspA family protein [Rhodococcus jostii RHA1] Length = 67 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N +KG+GFI P+ T DVF+H S ++ +G +L E Q V ++ Q Sbjct: 3 QGIVKWFNGEKGFGFIAPDDGTP---DVFVHYSEISGSGFKSLDENQRVEFEVGQ 54 >gi|300779976|ref|ZP_07089832.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030] gi|300534086|gb|EFK55145.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030] Length = 67 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N +KG+GFI P+ + DVF+H S + +G L E Q V ++ Sbjct: 4 GTVKWFNAEKGFGFIAPD---DGSSDVFVHYSEIQGSGFRTLEENQQVEFE 51 >gi|117924550|ref|YP_865167.1| cold-shock DNA-binding protein family protein [Magnetococcus sp. MC-1] gi|117608306|gb|ABK43761.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1] Length = 71 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFI P+ ++ DVF H S ++S +G +L EGQ V + D Sbjct: 7 GTVKWFNNDKGFGFIAPDNGSK---DVFAHFSEISSGSGFKSLEEGQKVEFSVEPGDKGP 63 Query: 64 K 64 K Sbjct: 64 K 64 >gi|24374170|ref|NP_718213.1| stress response protein CspD [Shewanella oneidensis MR-1] gi|113969986|ref|YP_733779.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-4] gi|114047221|ref|YP_737771.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-7] gi|117920198|ref|YP_869390.1| cold-shock DNA-binding protein family protein [Shewanella sp. ANA-3] gi|146293325|ref|YP_001183749.1| cold-shock DNA-binding domain-containing protein [Shewanella putrefaciens CN-32] gi|24348677|gb|AAN55657.1|AE015704_8 stress response protein CspD [Shewanella oneidensis MR-1] gi|113884670|gb|ABI38722.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4] gi|113888663|gb|ABI42714.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7] gi|117612530|gb|ABK47984.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3] gi|145565015|gb|ABP75950.1| cold-shock DNA-binding protein family [Shewanella putrefaciens CN-32] gi|319426625|gb|ADV54699.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens 200] Length = 68 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI P+ + G+DVF H S + G L GQ V ++ Q Sbjct: 4 GTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEQ 54 >gi|294636954|ref|ZP_06715278.1| cold shock domain protein CspD [Edwardsiella tarda ATCC 23685] gi|291089847|gb|EFE22408.1| cold shock domain protein CspD [Edwardsiella tarda ATCC 23685] Length = 73 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI P G GDD+F H +++ G L GQ V ++ Sbjct: 4 GTVKWFNNAKGFGFICPAG---GGDDIFAHYTSIQMEGYRTLKAGQRVQFE 51 >gi|254000444|ref|YP_003052507.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. SIP3-4] gi|313202403|ref|YP_004041061.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. MP688] gi|253987123|gb|ACT51980.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4] gi|312441719|gb|ADQ85825.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688] Length = 67 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N KG+GFITP+ + G D+F H SA+A G +L + V+++ + Sbjct: 4 GIVKWFNDSKGFGFITPD---DGGSDLFAHYSAIADTGYKSLKDNDRVSFEVI 53 >gi|88860388|ref|ZP_01135026.1| cold-shock DNA-binding domain family protein [Pseudoalteromonas tunicata D2] gi|88817586|gb|EAR27403.1| cold-shock DNA-binding domain family protein [Pseudoalteromonas tunicata D2] Length = 69 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI + E+G DVF H + G LTEGQ V + Q Sbjct: 7 GTVKWFNEAKGFGFI----AQENGPDVFAHFGNIVGEGFKTLTEGQKVEFIVTQGQ 58 >gi|302523728|ref|ZP_07276070.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] gi|302432623|gb|EFL04439.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] Length = 67 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFITP+ G DVF+H S + G L E V ++ Q Sbjct: 3 EGTVKWFNSEKGFGFITPD---NGGGDVFVHYSEIQGNGFRTLEENARVQFEIGQ 54 >gi|238782953|ref|ZP_04626981.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970] gi|332163162|ref|YP_004299739.1| cold shock-like protein cspG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|6073870|gb|AAB40923.2| major cold shock protein CSPA1 [Yersinia enterocolitica] gi|238716156|gb|EEQ08140.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970] gi|318603954|emb|CBY25452.1| cold shock protein CspG [Yersinia enterocolitica subsp. palearctica Y11] gi|325667392|gb|ADZ44036.1| cold shock-like protein cspG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862837|emb|CBX72978.1| cold shock-like protein cspB [Yersinia enterocolitica W22703] Length = 70 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IENGAKG 61 >gi|160914514|ref|ZP_02076729.1| hypothetical protein EUBDOL_00520 [Eubacterium dolichum DSM 3991] gi|158433672|gb|EDP11961.1| hypothetical protein EUBDOL_00520 [Eubacterium dolichum DSM 3991] Length = 65 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N +KG+GFI TE D+F+H S + G +L EG+ V ++ +++ Sbjct: 3 GNVKWFNAEKGFGFI----RTEEEKDIFVHYSQIVQDGYKSLNEGEAVRFEIFESE 54 >gi|146282648|ref|YP_001172801.1| cold-shock protein CspD [Pseudomonas stutzeri A1501] gi|145570853|gb|ABP79959.1| cold-shock protein CspD [Pseudomonas stutzeri A1501] Length = 93 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G E D+F H SA+ G L GQ V ++ +Q Sbjct: 10 GKVKWFNNAKGYGFIVADGGDE---DLFAHYSAIQMEGYRTLKAGQAVMFNILQ 60 >gi|157375023|ref|YP_001473623.1| cold-shock DNA-binding domain-containing protein [Shewanella sediminis HAW-EB3] gi|170727046|ref|YP_001761072.1| cold-shock DNA-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|157317397|gb|ABV36495.1| cold-shock DNA-binding domain protein [Shewanella sediminis HAW-EB3] gi|169812393|gb|ACA86977.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC 51908] Length = 68 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI PE G+DVF H S + G L GQ V ++ Sbjct: 4 GTVKWFNNAKGFGFICPEA---GGEDVFAHYSTIEMEGYRTLKAGQPVQFE 51 >gi|257485426|ref|ZP_05639467.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625414|ref|ZP_06458368.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649303|ref|ZP_06480646.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. aesculi str. 2250] gi|298487538|ref|ZP_07005580.1| Cold shock-like protein cspD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157922|gb|EFH99000.1| Cold shock-like protein cspD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866849|gb|EGH01558.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889670|gb|EGH22331.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. mori str. 301020] Length = 94 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G + DD+F H S + G L GQ V+++ +Q Sbjct: 6 GKVKWFNNAKGYGFIIEDGKPD--DDLFAHFSTIQMEGYKTLKAGQPVSFEIIQ 57 >gi|111021610|ref|YP_704582.1| cold shock protein [Rhodococcus jostii RHA1] gi|226364145|ref|YP_002781927.1| cold shock protein [Rhodococcus opacus B4] gi|110821140|gb|ABG96424.1| cold shock protein [Rhodococcus jostii RHA1] gi|226242634|dbj|BAH52982.1| cold shock protein [Rhodococcus opacus B4] Length = 67 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI P+ + DVF+H S ++ +G +L E Q V ++ Q Sbjct: 3 QGVVKWFNSEKGFGFIAPDDGSA---DVFVHYSEISGSGYKSLEENQRVEFEVGQGQKGP 59 Query: 64 KYSAENLKLV 73 + A+N++ V Sbjct: 60 Q--AQNVRAV 67 >gi|84393766|ref|ZP_00992514.1| cold shock-like protein CspD [Vibrio splendidus 12B01] gi|84375628|gb|EAP92527.1| cold shock-like protein CspD [Vibrio splendidus 12B01] Length = 73 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PEG E G D+F H S + G L GQ V Y+ V++ G Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMEGYRTLKAGQQVDYE-VESGPKGS 59 Query: 65 YSA 67 +++ Sbjct: 60 HAS 62 >gi|322434375|ref|YP_004216587.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321162102|gb|ADW67807.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 75 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++G +KW+N KG+GF+ E G DVF+H S++ G +L EG V +D +Q + Sbjct: 4 YKGEVKWFNNAKGFGFL----GREEGPDVFVHYSSIQLDGYKSLKEGDKVEFDVIQGE 57 >gi|291303304|ref|YP_003514582.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290572524|gb|ADD45489.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis DSM 44728] Length = 144 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KWYN +KG+GF++ + G+DVFLHR A+ G+ L GQ + Y V Sbjct: 15 GRVKWYNAEKGFGFVS---RDDGGNDVFLHRDALPE-GVTELKAGQKLEYGIV 63 >gi|91784878|ref|YP_560084.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|296160038|ref|ZP_06842858.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|91688832|gb|ABE32032.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] gi|295889784|gb|EFG69582.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] Length = 67 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT S G+D+F H S + + G +L E Q V++D V+ Sbjct: 1 METGIVKWFNDAKGFGFIT---SDSGGEDLFAHFSEIRADGFKSLKENQRVSFD-VKAGP 56 Query: 62 NGKYSA 67 GK +A Sbjct: 57 KGKQAA 62 >gi|330883205|gb|EGH17354.1| cold shock domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 59 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 4/49 (8%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 1 FNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 45 >gi|52425199|ref|YP_088336.1| CspC protein [Mannheimia succiniciproducens MBEL55E] gi|52307251|gb|AAU37751.1| CspC protein [Mannheimia succiniciproducens MBEL55E] Length = 70 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFITP + D+F+H S++ +L EG V Y+ V+N G Sbjct: 6 GLVKWFNSDKGFGFITP---ADGSKDLFVHFSSILGNNYRSLNEGDRVEYN-VENTQRGP 61 Query: 65 YSAE 68 + E Sbjct: 62 AAVE 65 >gi|294053655|ref|YP_003547313.1| cold-shock DNA-binding domain protein [Coraliomargarita akajimensis DSM 45221] gi|293612988|gb|ADE53143.1| cold-shock DNA-binding domain protein [Coraliomargarita akajimensis DSM 45221] Length = 67 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW++ +KGYGFI P+ ++ D+F+H S + S G L +GQ V ++ Sbjct: 4 GTVKWFDAEKGYGFIQPDDGSK---DLFVHHSEIQSDGYAKLEDGQKVEFE 51 >gi|218709066|ref|YP_002416687.1| Cold shock-like protein cspD [Vibrio splendidus LGP32] gi|218322085|emb|CAV18171.1| Cold shock-like protein cspD [Vibrio splendidus LGP32] Length = 76 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PEG E G D+F H S + G L GQ V Y+ V++ G Sbjct: 7 GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMEGYRTLKAGQQVDYE-VESGPKGS 62 Query: 65 YSA 67 +++ Sbjct: 63 HAS 65 >gi|86146448|ref|ZP_01064771.1| cold shock-like protein CspD [Vibrio sp. MED222] gi|85835711|gb|EAQ53846.1| cold shock-like protein CspD [Vibrio sp. MED222] Length = 73 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PEG E G D+F H S + G L GQ V Y+ V++ G Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIQMEGYRTLKAGQQVDYE-VESGPKGS 59 Query: 65 YSA 67 +++ Sbjct: 60 HAS 62 >gi|153953338|ref|YP_001394103.1| CspA [Clostridium kluyveri DSM 555] gi|219853967|ref|YP_002471089.1| hypothetical protein CKR_0624 [Clostridium kluyveri NBRC 12016] gi|146346219|gb|EDK32755.1| CspA [Clostridium kluyveri DSM 555] gi|219567691|dbj|BAH05675.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 67 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI G +DVF+H +A+ S NL EGQ V +D V+ G Sbjct: 4 GTVKWFNSEKGFGFIEVPGE----NDVFVHFTAIQSNEARKNLEEGQKVQFD-VEEGPKG 58 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 59 LQAANVVKL 67 >gi|146283032|ref|YP_001173185.1| cold shock protein CspA [Pseudomonas stutzeri A1501] gi|145571237|gb|ABP80343.1| cold shock protein CspA [Pseudomonas stutzeri A1501] Length = 136 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI +G DVF+H A+ G +L EGQ V + +Q Sbjct: 74 GTVKWFNDAKGYGFI----QRGNGADVFVHYRAIRGDGHRSLAEGQQVEFSVIQ 123 >gi|329894352|ref|ZP_08270222.1| putative cold-shock DNA-binding domain protein [gamma proteobacterium IMCC3088] gi|328923148|gb|EGG30471.1| putative cold-shock DNA-binding domain protein [gamma proteobacterium IMCC3088] Length = 70 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N KGYGFI E + DDVF+H ++ G L EGQ V + Sbjct: 7 GKVKWFNNAKGYGFIERENES---DDVFVHFRSIQGEGFRTLNEGQAVEF 53 >gi|312137854|ref|YP_004005190.1| cold shock protein [Rhodococcus equi 103S] gi|325676045|ref|ZP_08155727.1| cold shock protein CspA [Rhodococcus equi ATCC 33707] gi|311887193|emb|CBH46502.1| cold shock protein [Rhodococcus equi 103S] gi|325553085|gb|EGD22765.1| cold shock protein CspA [Rhodococcus equi ATCC 33707] Length = 67 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI P ++ D+F+H S + S G +L E Q V ++ Q Sbjct: 3 EGTVKWFNSEKGFGFIAP---SDGSADLFVHYSEIQSGGFRSLEENQHVRFEIGQ 54 >gi|269102226|ref|ZP_06154923.1| cold shock protein CspD [Photobacterium damselae subsp. damselae CIP 102761] gi|268162124|gb|EEZ40620.1| cold shock protein CspD [Photobacterium damselae subsp. damselae CIP 102761] Length = 73 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 9/75 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI P E GD D+F H S + G L GQ V Y+ VQ G Sbjct: 4 GTVKWFNNAKGFGFICP----EDGDGDIFAHYSTIQMDGYRTLKAGQQVNYE-VQTGPKG 58 Query: 64 KYSAENLKLVPKSSN 78 ++ E + P SN Sbjct: 59 FHARE---ITPIESN 70 >gi|158296117|ref|XP_316618.3| AGAP006591-PA [Anopheles gambiae str. PEST] gi|157016359|gb|EAA11383.3| AGAP006591-PA [Anopheles gambiae str. PEST] Length = 182 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 RG KW+N KG+GFITP+ + G +VF+H+S + G +L E + V ++ Sbjct: 43 RGRCKWFNVVKGWGFITPD---DGGQEVFVHQSVIQMGGFRSLGENEEVEFE 91 >gi|153811452|ref|ZP_01964120.1| hypothetical protein RUMOBE_01844 [Ruminococcus obeum ATCC 29174] gi|149832579|gb|EDM87663.1| hypothetical protein RUMOBE_01844 [Ruminococcus obeum ATCC 29174] gi|291546074|emb|CBL19182.1| cold-shock DNA-binding protein family [Ruminococcus sp. SR1/5] Length = 75 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KGYGFIT E G D F H S + G L+ GQ V ++ DANG Sbjct: 6 QGTVKWFSAQKGYGFIT----GEDGIDYFAHFSEIQMDGYRKLSGGQPVLFE-AGTDANG 60 Query: 64 KYSAENL 70 + A+N+ Sbjct: 61 RSLAKNI 67 >gi|22124143|ref|NP_667566.1| cold shock-like protein [Yersinia pestis KIM 10] gi|108809648|ref|YP_653564.1| major cold shock protein Cspa1 [Yersinia pestis Antiqua] gi|108813686|ref|YP_649453.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516] gi|21956898|gb|AAM83817.1|AE013622_6 cold shock-like protein [Yersinia pestis KIM 10] gi|108777334|gb|ABG19853.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108781561|gb|ABG15619.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] Length = 102 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 39 GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 94 Query: 65 YSAENLKL 72 + + L Sbjct: 95 SAVNVIAL 102 >gi|88859394|ref|ZP_01134034.1| Cold shock protein [Pseudoalteromonas tunicata D2] gi|88818411|gb|EAR28226.1| Cold shock protein [Pseudoalteromonas tunicata D2] Length = 69 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI SG DVF H SA++ G L EGQ V +V Sbjct: 7 GTVKWFNEAKGFGFI----EQASGPDVFAHFSAISGDGFKTLAEGQKV--QFVVTKGQKG 60 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 61 PQAENIVVL 69 >gi|144900094|emb|CAM76958.1| cold shock DNA-binding domain protein [Magnetospirillum gryphiswaldense MSR-1] Length = 209 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++KW+N KG+GF+ P T D FLH SA+ AGL + EG + D Q + Sbjct: 55 TVKWFNASKGFGFVAPSDGTP---DAFLHISALERAGLTQVAEGTTLVVDLGQGN 106 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +K+++ +KG+GF+ + + G DVF+H A+ +G+ L GQ V Q Sbjct: 146 GVVKFFSAEKGFGFVQTD---QGGKDVFVHIKALERSGIKALETGQRVRCTTTQ 196 >gi|320323777|gb|EFW79861.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. glycinea str. B076] gi|320327917|gb|EFW83922.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. glycinea str. race 4] gi|330881200|gb|EGH15349.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. glycinea str. race 4] gi|330987930|gb|EGH86033.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010738|gb|EGH90794.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 92 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G + DD+F H S + G L GQ V+++ +Q Sbjct: 4 GKVKWFNNAKGYGFIIEDGKPD--DDLFAHFSTIQMEGYKTLKAGQPVSFEIIQ 55 >gi|251789968|ref|YP_003004689.1| cold-shock DNA-binding domain-containing protein [Dickeya zeae Ech1591] gi|271500838|ref|YP_003333863.1| cold-shock DNA-binding domain-containing protein [Dickeya dadantii Ech586] gi|307130778|ref|YP_003882794.1| cold shock protein [Dickeya dadantii 3937] gi|247538589|gb|ACT07210.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591] gi|270344393|gb|ACZ77158.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586] gi|306528307|gb|ADM98237.1| cold shock protein [Dickeya dadantii 3937] Length = 73 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI PE G+D+F H S + G L GQ+V + Q Sbjct: 4 GTVKWFNNAKGFGFICPE---SGGEDIFAHYSTIQMDGYRTLKAGQVVQFTVHQ 54 >gi|186475442|ref|YP_001856912.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184191901|gb|ACC69866.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 67 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFIT S G+D+F H S + + G +L E Q V++D V+ Sbjct: 1 METGIVKWFNDAKGYGFIT---SDTGGEDLFAHFSEIRADGFKSLKENQRVSFD-VKAGP 56 Query: 62 NGKYSA 67 G+ +A Sbjct: 57 KGRQAA 62 >gi|85059078|ref|YP_454780.1| cold shock-like protein [Sodalis glossinidius str. 'morsitans'] gi|84779598|dbj|BAE74375.1| cold shock-like protein [Sodalis glossinidius str. 'morsitans'] Length = 73 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI PE G+D+F H S + G L GQ+V ++ Q Sbjct: 4 GKVKWFNNAKGFGFICPE---NGGEDIFAHYSMIHMDGYRTLKAGQVVRFEVHQ 54 >gi|22124144|ref|NP_667567.1| cold shock-like protein [Yersinia pestis KIM 10] gi|45443633|ref|NP_995172.1| cold shock-like protein [Yersinia pestis biovar Microtus str. 91001] gi|21956899|gb|AAM83818.1|AE013622_7 cold shock-like protein [Yersinia pestis KIM 10] gi|45438503|gb|AAS64049.1| cold shock-like protein [Yersinia pestis biovar Microtus str. 91001] Length = 95 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 32 GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 87 Query: 65 YSAENLKL 72 + + L Sbjct: 88 AAVNVIAL 95 >gi|119476410|ref|ZP_01616761.1| Cold-shock DNA-binding protein [marine gamma proteobacterium HTCC2143] gi|119450274|gb|EAW31509.1| Cold-shock DNA-binding protein [marine gamma proteobacterium HTCC2143] Length = 144 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGF+T SG+++F+H +++ G L EGQ + + V D + Sbjct: 79 GTVKWFNVSKGYGFVT----RASGEEIFVHFRSISGNGRKVLREGQKIEFSVVDGDKGPQ 134 Query: 65 YSAENLKLV 73 AE++ +V Sbjct: 135 --AEDVDIV 141 >gi|19551424|ref|NP_599426.1| cold shock protein [Corynebacterium glutamicum ATCC 13032] gi|62389068|ref|YP_224470.1| cold-shock protein CspA [Corynebacterium glutamicum ATCC 13032] gi|21322938|dbj|BAB97567.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032] gi|41324401|emb|CAF18741.1| COLD-SHOCK PROTEIN CSPA [Corynebacterium glutamicum ATCC 13032] Length = 67 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI P + D+F+H S + +G NL E Q V ++ Sbjct: 3 QGTVKWFNGEKGFGFIAP---NDGSADLFVHYSEIQGSGFRNLEENQPVEFE 51 >gi|327480906|gb|AEA84216.1| cold-shock protein CspD [Pseudomonas stutzeri DSM 4166] Length = 87 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G E D+F H SA+ G L GQ V ++ +Q Sbjct: 4 GKVKWFNNAKGYGFIVADGGDE---DLFAHYSAIQMEGYRTLKAGQAVMFNILQ 54 >gi|305680386|ref|ZP_07403194.1| cold shock protein CspA [Corynebacterium matruchotii ATCC 14266] gi|305659917|gb|EFM49416.1| cold shock protein CspA [Corynebacterium matruchotii ATCC 14266] Length = 68 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI PE + DVF+H S + G L E Q+V ++ Sbjct: 3 KGTVKWFNAEKGFGFIEPEDGSA---DVFVHYSEINGDGFRYLEEDQVVEFE 51 >gi|206896315|ref|YP_002247470.1| hypothetical protein COPRO5265_1162 [Coprothermobacter proteolyticus DSM 5265] gi|206738932|gb|ACI18010.1| conserved domain protein [Coprothermobacter proteolyticus DSM 5265] Length = 84 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW++ KGYGFIT + + DVF+H SA+ G L EG+ V ++ V A Sbjct: 18 MYAGTVKWFDAQKGYGFITRD---DGEGDVFVHFSAIEGDGFKTLNEGEKVEFE-VSRGA 73 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 74 KGPQAAHVVK 83 >gi|238794630|ref|ZP_04638236.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909] gi|238797908|ref|ZP_04641399.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969] gi|238718213|gb|EEQ10038.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969] gi|238726019|gb|EEQ17567.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909] Length = 66 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 3 GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IENGAKGP 58 Query: 65 YSAENLKL 72 + + L Sbjct: 59 SAVNVVAL 66 >gi|293604627|ref|ZP_06687029.1| cold-shock domain family protein [Achromobacter piechaudii ATCC 43553] gi|292816958|gb|EFF76037.1| cold-shock domain family protein [Achromobacter piechaudii ATCC 43553] Length = 69 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW+N DKGYGFI+PE G D+F H S + G +L E Q V++ Sbjct: 3 IETGIVKWFNNDKGYGFISPE---LGGKDLFAHYSEIQGDGHKSLEENQRVSF 52 >gi|15610784|ref|NP_218165.1| cold shock protein A [Mycobacterium tuberculosis H37Rv] gi|15843260|ref|NP_338297.1| cold-shock domain-contain protein [Mycobacterium tuberculosis CDC1551] gi|31794818|ref|NP_857311.1| cold shock protein A [Mycobacterium bovis AF2122/97] gi|41406521|ref|NP_959357.1| CspA_1 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464580|ref|YP_879797.1| hypothetical protein MAV_0516 [Mycobacterium avium 104] gi|121639561|ref|YP_979785.1| putative cold shock protein A cspA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663511|ref|YP_001285034.1| putative cold shock protein A [Mycobacterium tuberculosis H37Ra] gi|148824850|ref|YP_001289604.1| cold shock protein A cspA [Mycobacterium tuberculosis F11] gi|167968570|ref|ZP_02550847.1| cold shock protein A cspA [Mycobacterium tuberculosis H37Ra] gi|215405695|ref|ZP_03417876.1| cold shock protein A cspA [Mycobacterium tuberculosis 02_1987] gi|215413568|ref|ZP_03422240.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A] gi|215424892|ref|ZP_03422811.1| cold shock protein A cspA [Mycobacterium tuberculosis T92] gi|215447984|ref|ZP_03434736.1| cold shock protein A cspA [Mycobacterium tuberculosis T85] gi|218755426|ref|ZP_03534222.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503] gi|219559719|ref|ZP_03538795.1| cold shock protein A cspA [Mycobacterium tuberculosis T17] gi|224992058|ref|YP_002646747.1| putative cold shock protein A [Mycobacterium bovis BCG str. Tokyo 172] gi|253800688|ref|YP_003033689.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 1435] gi|254233144|ref|ZP_04926470.1| cold shock protein A cspA [Mycobacterium tuberculosis C] gi|254366198|ref|ZP_04982242.1| cold shock protein A cspA [Mycobacterium tuberculosis str. Haarlem] gi|254552760|ref|ZP_05143207.1| cold shock protein A cspA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|254773485|ref|ZP_05215001.1| putative cold shock protein A [Mycobacterium avium subsp. avium ATCC 25291] gi|260184565|ref|ZP_05762039.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A] gi|260198688|ref|ZP_05766179.1| cold shock protein A cspA [Mycobacterium tuberculosis T46] gi|260202831|ref|ZP_05770322.1| cold shock protein A cspA [Mycobacterium tuberculosis K85] gi|289441078|ref|ZP_06430822.1| cold shock protein A cspA [Mycobacterium tuberculosis T46] gi|289445242|ref|ZP_06434986.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A] gi|289555909|ref|ZP_06445119.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 605] gi|289571885|ref|ZP_06452112.1| cold shock protein A cspA [Mycobacterium tuberculosis T17] gi|289572295|ref|ZP_06452522.1| cold shock protein A cspA [Mycobacterium tuberculosis K85] gi|289747484|ref|ZP_06506862.1| cold shock protein A [Mycobacterium tuberculosis 02_1987] gi|289748162|ref|ZP_06507540.1| cold shock protein A cspA [Mycobacterium tuberculosis T92] gi|289759803|ref|ZP_06519181.1| cold shock protein A [Mycobacterium tuberculosis T85] gi|289763825|ref|ZP_06523203.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503] gi|294995441|ref|ZP_06801132.1| cold shock protein A cspA [Mycobacterium tuberculosis 210] gi|297636323|ref|ZP_06954103.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 4207] gi|297733316|ref|ZP_06962434.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN R506] gi|298527122|ref|ZP_07014531.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A] gi|306778001|ref|ZP_07416338.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu001] gi|306778534|ref|ZP_07416871.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu002] gi|306786555|ref|ZP_07424877.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu003] gi|306790921|ref|ZP_07429243.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu004] gi|306791241|ref|ZP_07429543.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu005] gi|306796028|ref|ZP_07434330.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu006] gi|306801275|ref|ZP_07437943.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu008] gi|306805489|ref|ZP_07442157.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu007] gi|306969780|ref|ZP_07482441.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu009] gi|306974119|ref|ZP_07486780.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu010] gi|307081827|ref|ZP_07490997.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu011] gi|307086441|ref|ZP_07495554.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu012] gi|313660648|ref|ZP_07817528.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN V2475] gi|54036917|sp|P63849|CSPA_MYCBO RecName: Full=Probable cold shock protein A gi|54040914|sp|P63848|CSPA_MYCTU RecName: Full=Probable cold shock protein A gi|2105046|emb|CAB08840.1| PROBABLE COLD SHOCK PROTEIN A CSPA [Mycobacterium tuberculosis H37Rv] gi|13883617|gb|AAK48111.1| cold-shock domain family protein [Mycobacterium tuberculosis CDC1551] gi|31620415|emb|CAD95858.1| PROBABLE COLD SHOCK PROTEIN A CSPA [Mycobacterium bovis AF2122/97] gi|41394870|gb|AAS02740.1| CspA_1 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165867|gb|ABK66764.1| conserved domain protein [Mycobacterium avium 104] gi|121495209|emb|CAL73695.1| Probable cold shock protein A cspA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602937|gb|EAY61212.1| cold shock protein A cspA [Mycobacterium tuberculosis C] gi|134151710|gb|EBA43755.1| cold shock protein A cspA [Mycobacterium tuberculosis str. Haarlem] gi|148507663|gb|ABQ75472.1| putative cold shock protein A [Mycobacterium tuberculosis H37Ra] gi|148723377|gb|ABR08002.1| cold shock protein A cspA [Mycobacterium tuberculosis F11] gi|224775173|dbj|BAH27979.1| putative cold shock protein A [Mycobacterium bovis BCG str. Tokyo 172] gi|253322191|gb|ACT26794.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 1435] gi|289413997|gb|EFD11237.1| cold shock protein A cspA [Mycobacterium tuberculosis T46] gi|289418200|gb|EFD15401.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A] gi|289440541|gb|EFD23034.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 605] gi|289536726|gb|EFD41304.1| cold shock protein A cspA [Mycobacterium tuberculosis K85] gi|289545639|gb|EFD49287.1| cold shock protein A cspA [Mycobacterium tuberculosis T17] gi|289688012|gb|EFD55500.1| cold shock protein A [Mycobacterium tuberculosis 02_1987] gi|289688749|gb|EFD56178.1| cold shock protein A cspA [Mycobacterium tuberculosis T92] gi|289711331|gb|EFD75347.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503] gi|289715367|gb|EFD79379.1| cold shock protein A [Mycobacterium tuberculosis T85] gi|298496916|gb|EFI32210.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A] gi|308213712|gb|EFO73111.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu001] gi|308328442|gb|EFP17293.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu002] gi|308328877|gb|EFP17728.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu003] gi|308332717|gb|EFP21568.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu004] gi|308340210|gb|EFP29061.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu005] gi|308343496|gb|EFP32347.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu006] gi|308347996|gb|EFP36847.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu007] gi|308351938|gb|EFP40789.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu008] gi|308352698|gb|EFP41549.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu009] gi|308356572|gb|EFP45423.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu010] gi|308360530|gb|EFP49381.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu011] gi|308364142|gb|EFP52993.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu012] gi|323717697|gb|EGB26898.1| cold shock protein A cspA [Mycobacterium tuberculosis CDC1551A] gi|326905483|gb|EGE52416.1| cold shock protein A cspA [Mycobacterium tuberculosis W-148] gi|328460418|gb|AEB05841.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 4207] Length = 67 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI PE + DVF+H + + G L E Q V ++ Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGTGFRTLEENQKVEFE 51 >gi|85717414|ref|ZP_01048364.1| cold shock protein [Nitrobacter sp. Nb-311A] gi|85695769|gb|EAQ33677.1| cold shock protein [Nitrobacter sp. Nb-311A] Length = 62 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 +G FI PE G DVF+H SAV AGL +L+EG V+++ VQN GK SAE Sbjct: 6 EGLRFIEPESG---GKDVFVHISAVERAGLSSLSEGDKVSHEVVQN--RGKESAET 56 >gi|241889467|ref|ZP_04776767.1| putative cold shock protein [Gemella haemolysans ATCC 10379] gi|329768516|ref|ZP_08260004.1| cold shock protein cspA [Gemella haemolysans M341] gi|241863863|gb|EER68245.1| putative cold shock protein [Gemella haemolysans ATCC 10379] gi|328836666|gb|EGF86323.1| cold shock protein cspA [Gemella haemolysans M341] Length = 66 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI G D+F+H S++ G L EG V ++ V++ A Sbjct: 1 MKQGTVKWFNEEKGFGFIEVAGEK----DIFVHFSSIKKDGFKTLKEGDKVEFE-VEDGA 55 Query: 62 NGKYSA 67 G +A Sbjct: 56 RGPQAA 61 >gi|145300857|ref|YP_001143698.1| major cold shock protein [Aeromonas salmonicida subsp. salmonicida A449] gi|330828121|ref|YP_004391073.1| Cold shock-like protein cspI [Aeromonas veronii B565] gi|142853629|gb|ABO91950.1| major cold shock protein [Aeromonas salmonicida subsp. salmonicida A449] gi|328803257|gb|AEB48456.1| Cold shock-like protein cspI [Aeromonas veronii B565] Length = 70 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++K++N +KG+GFI+P + DVF+H SA+ S L EGQ V + Q Sbjct: 7 GTVKFFNAEKGFGFISP---ADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQ 57 >gi|88798111|ref|ZP_01113698.1| Cold shock protein [Reinekea sp. MED297] gi|88779308|gb|EAR10496.1| Cold shock protein [Reinekea sp. MED297] Length = 153 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GF+T ++G+DVF+H ++ G +L EGQ V + V++ Sbjct: 88 GLVKWFNVSKGFGFVT----RDNGEDVFVHFRSIRGRGHRSLQEGQRVRFGVVESSKG-- 141 Query: 65 YSAENLKLVPK 75 AE++ +V + Sbjct: 142 LQAEDVTIVRQ 152 >gi|322433221|ref|YP_004210442.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321165613|gb|ADW71315.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 83 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KGYGF+ EG G DVF+H S++ G L EG V +D +Q + Sbjct: 6 GEVKWFNNAKGYGFLGREG----GPDVFVHYSSIQLDGYKTLKEGDPVEFDIIQGN 57 >gi|262037747|ref|ZP_06011189.1| cold shock protein-related protein [Leptotrichia goodfellowii F0264] gi|261748219|gb|EEY35616.1| cold shock protein-related protein [Leptotrichia goodfellowii F0264] Length = 65 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI S E G+D FLH S + G ++ EG+ V++D Sbjct: 3 GKVKWFNDKKGFGFI----SGEDGNDYFLHFSKINKEGFKSVNEGEEVSFD 49 >gi|167753531|ref|ZP_02425658.1| hypothetical protein ALIPUT_01806 [Alistipes putredinis DSM 17216] gi|167658156|gb|EDS02286.1| hypothetical protein ALIPUT_01806 [Alistipes putredinis DSM 17216] Length = 66 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 5/60 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KGYGFIT E G +VF+H S + S L EGQ V ++ + N A G+ Sbjct: 3 GQVKWFDSKKGYGFITR----EDGKEVFVHFSGIVSDSFKTLNEGQKVAFE-LGNGAKGE 57 >gi|1402755|gb|AAC80244.1| major cold-shock protein [Lactobacillus casei] Length = 45 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 4/48 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 DKGYGFIT E G DVF+H SA+ G +L EGQ V+YD Q+D Sbjct: 1 DKGYGFITGE----DGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSD 44 >gi|108809647|ref|YP_653563.1| major cold shock protein Cspa2 [Yersinia pestis Antiqua] gi|108813687|ref|YP_649454.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516] gi|145597566|ref|YP_001161642.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides F] gi|153948953|ref|YP_001399367.1| cold shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|153997419|ref|ZP_02022519.1| major cold shock protein Cspa2 [Yersinia pestis CA88-4125] gi|162421711|ref|YP_001605762.1| cold shock DNA-binding domain-containing protein [Yersinia pestis Angola] gi|165927588|ref|ZP_02223420.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165937409|ref|ZP_02225972.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166012234|ref|ZP_02233132.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214132|ref|ZP_02240167.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167401979|ref|ZP_02307462.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420637|ref|ZP_02312390.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425433|ref|ZP_02317186.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218930653|ref|YP_002348528.1| major cold shock protein Cspa2 [Yersinia pestis CO92] gi|229836786|ref|ZP_04456951.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides A] gi|229839314|ref|ZP_04459473.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899878|ref|ZP_04515019.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis str. India 195] gi|229904189|ref|ZP_04519300.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516] gi|270488628|ref|ZP_06205702.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|2275140|emb|CAB10779.1| hypothetical protein [Yersinia pestis] gi|108777335|gb|ABG19854.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108781560|gb|ABG15618.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] gi|115349264|emb|CAL22231.1| major cold shock protein Cspa2 [Yersinia pestis CO92] gi|145209262|gb|ABP38669.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|149289056|gb|EDM39136.1| major cold shock protein Cspa2 [Yersinia pestis CA88-4125] gi|152960448|gb|ABS47909.1| 'Cold-shock' DNA-binding domain [Yersinia pseudotuberculosis IP 31758] gi|162354526|gb|ABX88474.1| cold shock DNA-binding domain protein [Yersinia pestis Angola] gi|165914514|gb|EDR33128.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920482|gb|EDR37759.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165988853|gb|EDR41154.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204619|gb|EDR49099.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961443|gb|EDR57464.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048565|gb|EDR59973.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055447|gb|EDR65240.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678307|gb|EEO74412.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516] gi|229687370|gb|EEO79445.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis str. India 195] gi|229695680|gb|EEO85727.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705729|gb|EEO91738.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides A] gi|270337132|gb|EFA47909.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|320017194|gb|ADW00766.1| major cold shock protein Cspa2 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 70 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 AAVNVIAL 70 >gi|238024869|ref|YP_002909101.1| Cold shock protein [Burkholderia glumae BGR1] gi|237879534|gb|ACR31866.1| Cold shock protein [Burkholderia glumae BGR1] Length = 67 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI+P+ DD+F H S + G +L EGQ V+++ Sbjct: 4 GIVKWFNDSKGFGFISPDNGK---DDLFAHFSEIRGDGFRSLAEGQRVSFE 51 >gi|169627591|ref|YP_001701240.1| cold shock protein A (CspA) [Mycobacterium abscessus ATCC 19977] gi|169239558|emb|CAM60586.1| Probable cold shock protein A (CspA) [Mycobacterium abscessus] Length = 67 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N +KG+GFI PE + DVF+H + + G L E Q V ++ Q+ Sbjct: 3 QGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGNGFRTLEENQKVEFEVGQS 55 >gi|330503289|ref|YP_004380158.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] gi|328917575|gb|AEB58406.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] Length = 95 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G E D+F H SA+ G L GQ V ++ VQ Sbjct: 10 GKVKWFNNAKGYGFILADGRDE---DLFAHYSAIQMDGYKTLKAGQPVRFEIVQ 60 >gi|183598325|ref|ZP_02959818.1| hypothetical protein PROSTU_01715 [Providencia stuartii ATCC 25827] gi|188020499|gb|EDU58539.1| hypothetical protein PROSTU_01715 [Providencia stuartii ATCC 25827] Length = 83 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G++KW+N KG+GFI PE G+D+F H S + G L GQ V + Sbjct: 1 METGTVKWFNNAKGFGFICPE---NGGEDIFAHYSCIQMEGYRTLKAGQKVNF 50 >gi|54298263|ref|YP_124632.1| hypothetical protein lpp2321 [Legionella pneumophila str. Paris] gi|53752048|emb|CAH13474.1| hypothetical protein lpp2321 [Legionella pneumophila str. Paris] Length = 69 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + Sbjct: 6 RGKVKWFNKDKGFGFI-----ESSGKDYFVHFSSIQSGGFKTLPDGATVLF 51 >gi|310287193|ref|YP_003938451.1| Cold shock protein [Bifidobacterium bifidum S17] gi|313139892|ref|ZP_07802085.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium bifidum NCIMB 41171] gi|309251129|gb|ADO52877.1| Cold shock protein [Bifidobacterium bifidum S17] gi|313132402|gb|EFR50019.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium bifidum NCIMB 41171] Length = 89 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++K+++ KGYGFIT S GDDVF+H S + + G L EG V Y+ Sbjct: 25 QGTVKFFSAGKGYGFIT---SDAGGDDVFVHYSVIQADGFKTLNEGDKVEYE 73 >gi|114563427|ref|YP_750940.1| cold-shock DNA-binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114334720|gb|ABI72102.1| cold-shock DNA-binding protein family [Shewanella frigidimarina NCIMB 400] gi|149675688|dbj|BAF64723.1| cold shock protein [Shewanella livingstonensis] Length = 68 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ + G+DVF H S + G L GQ V ++ V+ G Sbjct: 4 GTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVCFE-VEEGPKGM 59 Query: 65 YSA 67 +++ Sbjct: 60 HAS 62 >gi|45443632|ref|NP_995171.1| major cold shock protein Cspa1 [Yersinia pestis biovar Microtus str. 91001] gi|145597567|ref|YP_001161643.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides F] gi|153997418|ref|ZP_02022518.1| major cold shock protein Cspa1 [Yersinia pestis CA88-4125] gi|162420218|ref|YP_001605761.1| cold shock DNA-binding domain-containing protein [Yersinia pestis Angola] gi|165927555|ref|ZP_02223387.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165937557|ref|ZP_02226120.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166012240|ref|ZP_02233138.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214174|ref|ZP_02240209.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167401977|ref|ZP_02307460.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420574|ref|ZP_02312327.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425550|ref|ZP_02317303.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022695|ref|YP_001719200.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|218930654|ref|YP_002348529.1| major cold shock protein Cspa1 [Yersinia pestis CO92] gi|229836787|ref|ZP_04456952.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides A] gi|229839313|ref|ZP_04459472.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899877|ref|ZP_04515018.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis str. India 195] gi|229904188|ref|ZP_04519299.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516] gi|270488627|ref|ZP_06205701.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|45438502|gb|AAS64048.1| major cold shock protein Cspa1 [Yersinia pestis biovar Microtus str. 91001] gi|115349265|emb|CAL22232.1| major cold shock protein Cspa1 [Yersinia pestis CO92] gi|145209263|gb|ABP38670.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|149289055|gb|EDM39135.1| major cold shock protein Cspa1 [Yersinia pestis CA88-4125] gi|162353033|gb|ABX86981.1| cold shock DNA-binding domain protein [Yersinia pestis Angola] gi|165914662|gb|EDR33276.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920449|gb|EDR37726.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165988859|gb|EDR41160.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204661|gb|EDR49141.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961380|gb|EDR57401.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048563|gb|EDR59971.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055564|gb|EDR65357.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749229|gb|ACA66747.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|229678306|gb|EEO74411.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516] gi|229687369|gb|EEO79444.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis str. India 195] gi|229695679|gb|EEO85726.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705730|gb|EEO91739.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides A] gi|270337131|gb|EFA47908.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|320017193|gb|ADW00765.1| major cold shock protein Cspa1 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 70 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 SAVNVIAL 70 >gi|268678896|ref|YP_003303327.1| Cold-shock protein DNA-binding protein [Sulfurospirillum deleyianum DSM 6946] gi|268616927|gb|ACZ11292.1| Cold-shock protein DNA-binding protein [Sulfurospirillum deleyianum DSM 6946] Length = 71 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTEGQLVTYD 55 G++KW+N +KG+GFI P + G DVF+H V G +L EGQ VTY+ Sbjct: 6 GTVKWFNNEKGFGFIQP---NDGGKDVFVHFRQVNRTGYGRVSLAEGQKVTYE 55 >gi|226954179|ref|ZP_03824643.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|294650207|ref|ZP_06727581.1| cold shock family protein [Acinetobacter haemolyticus ATCC 19194] gi|226835048|gb|EEH67431.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|292823913|gb|EFF82742.1| cold shock family protein [Acinetobacter haemolyticus ATCC 19194] Length = 69 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI +SG DVF H S + S G L EGQ V++ Sbjct: 7 GTVKWFNETKGFGFI----QADSGQDVFAHFSEIQSNGFKVLHEGQRVSF 52 >gi|94499669|ref|ZP_01306206.1| Cold shock protein [Oceanobacter sp. RED65] gi|94428423|gb|EAT13396.1| Cold shock protein [Oceanobacter sp. RED65] Length = 92 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW+N KGYGFI S E G+D+F H S++ G L GQ V +D +D Sbjct: 1 MQTGKVKWFNNAKGYGFIL---SDEGGEDLFAHYSSIQVEGYKTLKAGQSVQFDTKPSD 56 >gi|187478817|ref|YP_786841.1| cold shock protein [Bordetella avium 197N] gi|115423403|emb|CAJ49937.1| cold shock protein [Bordetella avium 197N] Length = 69 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N +KG+GFI PE G D+F H S + G +L E Q V++ Sbjct: 6 GVVKWFNSEKGFGFIAPE---SGGKDLFAHFSEIVGTGFKSLEENQRVSF 52 >gi|317491427|ref|ZP_07949863.1| cold shock domain-containing protein CspD [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920974|gb|EFV42297.1| cold shock domain-containing protein CspD [Enterobacteriaceae bacterium 9_2_54FAA] Length = 73 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + G+D+F H S++ G L GQ V ++ VQ Sbjct: 1 METGTVKWFNNAKGFGFICP---LKGGEDIFAHYSSIQMEGYRTLKAGQQVQFN-VQEGP 56 Query: 62 NGKYS 66 G ++ Sbjct: 57 KGNHA 61 >gi|296395233|ref|YP_003660117.1| cold-shock DNA-binding domain-containing protein [Segniliparus rotundus DSM 44985] gi|296182380|gb|ADG99286.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM 44985] Length = 145 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ DKG+GF+T E GDDV++ SA+ AG+ L GQ+V + A Sbjct: 5 VPTGKVKWYSADKGFGFLT----QEDGDDVYVGSSAL-PAGVDELKPGQVVEFGM----A 55 Query: 62 NGKYSAENLKL 72 +G+ + L + Sbjct: 56 DGRRGPQALSI 66 >gi|330981383|gb|EGH79486.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 91 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI EG+ E D+F H SA+ G L GQ V ++ Q Sbjct: 3 EGKVKWFNNAKGFGFINAEGNNE---DLFAHFSAIEMDGYKTLKAGQKVRFEVAQ 54 >gi|224282734|ref|ZP_03646056.1| cold-shock DNA-binding domain protein [Bifidobacterium bifidum NCIMB 41171] gi|311064055|ref|YP_003970780.1| cold shock protein CspA [Bifidobacterium bifidum PRL2010] gi|310866374|gb|ADP35743.1| CspA Cold shock protein [Bifidobacterium bifidum PRL2010] Length = 67 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++K+++ KGYGFIT S GDDVF+H S + + G L EG V Y+ Sbjct: 3 QGTVKFFSAGKGYGFIT---SDAGGDDVFVHYSVIQADGFKTLNEGDKVEYE 51 >gi|194246689|ref|YP_002004328.1| Cold shock-like protein [Candidatus Phytoplasma mali] gi|193807046|emb|CAP18482.1| Cold shock-like protein [Candidatus Phytoplasma mali] Length = 85 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +W+N DKG+GF+ S D+F H++ + G +L EG+ V + VQ + G Sbjct: 14 KGVCRWFNKDKGFGFLQKLDS--DSQDIFFHQTDIKCEGFRSLDEGEEVEFTLVQGE-KG 70 Query: 64 KYSAENLKLVPKS 76 + E ++ +S Sbjct: 71 PQAIEIVRFTKQS 83 >gi|33592839|ref|NP_880483.1| cold shock-like protein [Bordetella pertussis Tohama I] gi|33572487|emb|CAE42059.1| cold shock-like protein [Bordetella pertussis Tohama I] gi|332382252|gb|AEE67099.1| cold shock-like protein [Bordetella pertussis CS] Length = 66 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N +KGYGFI P+ ++ D+F H S + S G +L E Q V+++ Q Sbjct: 4 GIVKWFNAEKGYGFIMPDDGSK---DLFAHYSEICSEGYKSLQENQRVSFEVGQ 54 >gi|332524835|ref|ZP_08401026.1| cold-shock DNA-binding protein family protein [Rubrivivax benzoatilyticus JA2] gi|332108135|gb|EGJ09359.1| cold-shock DNA-binding protein family protein [Rubrivivax benzoatilyticus JA2] Length = 70 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI P+ + G D+F H + +G L E Q V ++ Q Sbjct: 6 GTVKWFNEGKGFGFIAPD---DGGKDLFAHFKEIQGSGFKTLVENQRVEFEVTQ 56 >gi|260889081|ref|ZP_05900344.1| conserved domain protein [Leptotrichia hofstadii F0254] gi|260861141|gb|EEX75641.1| conserved domain protein [Leptotrichia hofstadii F0254] Length = 75 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI S E G+D FLH S + G + EG+ V++D Sbjct: 13 GKVKWFNDKKGFGFI----SGEDGNDYFLHFSKINKEGFKTVNEGEEVSFD 59 >gi|33152145|ref|NP_873498.1| cold shock-like protein CspC [Haemophilus ducreyi 35000HP] gi|33148367|gb|AAP95887.1| cold shock-like protein CspC [Haemophilus ducreyi 35000HP] Length = 69 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ G D+F+H S + + L EG V ++ VQ+ G Sbjct: 6 GIVKWFNSTKGFGFITPD---LGGKDIFVHFSGIIGSNFRTLEEGAKVEFE-VQDSDRGP 61 Query: 65 YSAENLK 71 SA N+K Sbjct: 62 -SAVNVK 67 >gi|284007908|emb|CBA73854.1| cold shock-like protein [Arsenophonus nasoniae] Length = 70 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G++KW+N KG+GFI PE G+D+F H S++ G L GQ V + Sbjct: 1 METGTVKWFNNAKGFGFICPE---NGGEDIFAHYSSIQMEGYRTLKAGQKVNF 50 >gi|251792619|ref|YP_003007345.1| cold shock domain-containing protein CspD [Aggregatibacter aphrophilus NJ8700] gi|247534012|gb|ACS97258.1| cold shock domain protein CspD [Aggregatibacter aphrophilus NJ8700] Length = 69 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KG+GFI+ EGS D+F H S + G +L GQ V ++ + D Sbjct: 4 GVVKWFNNAKGFGFISVEGSN---TDIFAHYSVIEMEGYRSLKAGQKVQFEVIHGD 56 >gi|257126384|ref|YP_003164498.1| cold-shock DNA-binding domain protein [Leptotrichia buccalis C-1013-b] gi|257050323|gb|ACV39507.1| cold-shock DNA-binding domain protein [Leptotrichia buccalis C-1013-b] Length = 65 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI S E G+D FLH S + G + EG+ V++D Sbjct: 3 GKVKWFNDKKGFGFI----SGEDGNDYFLHFSKINKEGFKTVNEGEEVSFD 49 >gi|149192133|ref|ZP_01870355.1| cold shock-like protein CspD [Vibrio shilonii AK1] gi|148834036|gb|EDL51051.1| cold shock-like protein CspD [Vibrio shilonii AK1] Length = 73 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI PEG E G D+F H S + G L GQ V Y+ Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DIFAHYSTIKMDGYRTLKAGQQVNYE 51 >gi|71278479|ref|YP_267487.1| cold shock DNA-binding domain-containing protein [Colwellia psychrerythraea 34H] gi|71144219|gb|AAZ24692.1| cold-shock DNA-binding domain family protein [Colwellia psychrerythraea 34H] Length = 69 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +K++N KG+GFI E+G DVF+H SA++ G L +GQ VT+ Q Sbjct: 7 GKVKFFNETKGFGFI----EQENGPDVFVHFSAISGDGFRTLADGQAVTFTVKQ 56 >gi|120555865|ref|YP_960216.1| cold-shock DNA-binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120325714|gb|ABM20029.1| cold shock protein E (CspE) [Marinobacter aquaeolei VT8] Length = 68 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 4/51 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++K++N KG+GFIT E +G DVF+H S++ G L EGQ V + Sbjct: 5 KGNVKFFNEAKGFGFITRE----NGADVFVHYSSIQGGGFKTLAEGQEVEF 51 >gi|323136438|ref|ZP_08071520.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] gi|322398512|gb|EFY01032.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] Length = 224 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GF+ S + G DVF+H S + +G+ L EGQ VT V + A G+ Sbjct: 161 GKVKWFDETKGFGFVQ---SNDGGKDVFVHISILGPSGVSRLVEGQPVTMQVV-DTAKGR 216 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 +KW+ DKG+GF+ E + +G D FLH AV +AG L G Sbjct: 57 VKWFKTDKGFGFV--ELANGTG-DAFLHIGAVQAAGYDTLPPG 96 >gi|261343363|ref|ZP_05971008.1| cold shock domain protein CspD [Providencia rustigianii DSM 4541] gi|282568501|gb|EFB74036.1| cold shock domain protein CspD [Providencia rustigianii DSM 4541] Length = 79 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KW+N KG+GFI P ++ G+D+F H S + G L GQ V + + Sbjct: 4 GTVKWFNNAKGFGFICP---SDGGEDIFAHYSCIQMEGYRTLKAGQKVNFSVI 53 >gi|315634348|ref|ZP_07889635.1| cold shock domain protein CspD [Aggregatibacter segnis ATCC 33393] gi|315476938|gb|EFU67683.1| cold shock domain protein CspD [Aggregatibacter segnis ATCC 33393] Length = 69 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI+ EGS D+F H S + G +L GQ V ++ + D Sbjct: 4 GVVKWFNNAKGFGFISAEGSD---TDIFAHYSVIEMDGYRSLKAGQKVQFEVIHGDKG-- 58 Query: 65 YSAENLKLVP 74 + K+VP Sbjct: 59 --SHATKIVP 66 >gi|298717348|ref|YP_003729990.1| cold shock-like protein cspI [Pantoea vagans C9-1] gi|304395197|ref|ZP_07377081.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|304395198|ref|ZP_07377082.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|298361537|gb|ADI78318.1| Cold shock-like protein cspI [Pantoea vagans C9-1] gi|304357450|gb|EFM21813.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|304357451|gb|EFM21814.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] Length = 70 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFI+P+ ++ DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFDAGKGFGFISPQDGSK---DVFVHFSAIQSNDYKTLDEGQQVEF-TIENGAKGP 62 Query: 65 YSA 67 +A Sbjct: 63 SAA 65 >gi|71027909|ref|XP_763598.1| cold shock protein [Theileria parva strain Muguga] gi|68350551|gb|EAN31315.1| cold shock protein, putative [Theileria parva] Length = 94 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G KW+N KGYGFIT E+G+DVF+H+S + + G +L E + V + + ++ K Sbjct: 6 GVCKWFNNKKGYGFIT----LENGEDVFVHQSEIYADGFRSLRENEKVELEVIMDNNRKK 61 >gi|229828454|ref|ZP_04454523.1| hypothetical protein GCWU000342_00515 [Shuttleworthia satelles DSM 14600] gi|229793048|gb|EEP29162.1| hypothetical protein GCWU000342_00515 [Shuttleworthia satelles DSM 14600] Length = 67 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW++ KGYGFI S E+G DVF+H S + G L EG V ++ +D Sbjct: 3 KGTVKWFDDRKGYGFI----SDEAGKDVFVHFSKLNMEGFKTLKEGATVDFEVEDSD 55 >gi|88703593|ref|ZP_01101309.1| cold-shock domain family protein [Congregibacter litoralis KT71] gi|88702307|gb|EAQ99410.1| cold-shock domain family protein [Congregibacter litoralis KT71] Length = 189 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI E+GD++F+H ++ G +L +G V Y V D Sbjct: 126 GTVKWFNGTKGFGFII----RENGDEIFVHHRSIIGEGRRSLRDGAPVRYRVVTTD 177 >gi|146307418|ref|YP_001187883.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina ymp] gi|145575619|gb|ABP85151.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp] Length = 89 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G E D+F H SA+ G L GQ V ++ VQ Sbjct: 4 GKVKWFNNAKGYGFILADGRDE---DLFAHYSAIQMDGYKTLKAGQPVRFEIVQ 54 >gi|325121558|gb|ADY81081.1| probable cold-shock protein [Acinetobacter calcoaceticus PHEA-2] Length = 71 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI + + G D+F H + + + G L EGQ V + VQ Sbjct: 6 GTVKWFNETKGFGFI----AADEGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQ 55 >gi|256380782|ref|YP_003104442.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] gi|255925085|gb|ACU40596.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] Length = 67 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KGYGFI + G DVF+H S + G L E Q V ++ Q Sbjct: 4 GTVKWFNAEKGYGFIA---QSNGGPDVFVHYSEIQGNGFRTLEENQRVEFEIGQ 54 >gi|327481387|gb|AEA84697.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 69 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI +G DVF+H A+ G +L EGQ V + +Q Sbjct: 7 GTVKWFNDAKGYGFI----QRGNGADVFVHYRAIRGDGHRSLAEGQQVEFSVIQ 56 >gi|282860603|ref|ZP_06269669.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|282564339|gb|EFB69875.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] Length = 127 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + GDDVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGDDVFVH-SSVLPAGVDALKPGQRVEFGVV 51 >gi|15602346|ref|NP_245418.1| CspD [Pasteurella multocida subsp. multocida str. Pm70] gi|12720739|gb|AAK02565.1| CspD [Pasteurella multocida subsp. multocida str. Pm70] Length = 69 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI+ EG+ D+F H S + G +L GQ V ++ V D G Sbjct: 4 GVVKWFNNAKGFGFISAEGTDA---DIFAHYSVIEMEGYRSLKAGQKVQFEVVHGD-KGS 59 Query: 65 YSAENLKLV 73 ++ + + +V Sbjct: 60 HATKIIPIV 68 >gi|46202227|ref|ZP_00053533.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 167 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 ++KW+N KG+GF+ P ++ D FLH SA+ AGL + EG + D Sbjct: 19 TVKWFNASKGFGFVAP---SDGSPDAFLHISALERAGLTQVAEGATLVVDL 66 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G +K+++ +KG+GF+ + E G DVF+H A+ +G+ L GQ V Sbjct: 104 GVVKFFSAEKGFGFVACD---EGGKDVFVHVKALERSGIKTLESGQRV 148 >gi|293608625|ref|ZP_06690928.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829198|gb|EFF87560.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 75 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI + + G D+F H + + + G L EGQ V + VQ Sbjct: 10 GTVKWFNETKGFGFI----AADEGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQ 59 >gi|270157314|ref|ZP_06185971.1| cold shock protein CspB [Legionella longbeachae D-4968] gi|289164302|ref|YP_003454440.1| stress protein, member of the CspA-family [Legionella longbeachae NSW150] gi|269989339|gb|EEZ95593.1| cold shock protein CspB [Legionella longbeachae D-4968] gi|288857475|emb|CBJ11305.1| stress protein, member of the CspA-family [Legionella longbeachae NSW150] Length = 68 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG +KW+N KG+GFI SG D F+H SA+ S+G +L EG V + Sbjct: 6 RGKVKWFNESKGFGFI-----ENSGKDYFVHFSAIQSSGFKSLPEGANVLF 51 >gi|52841294|ref|YP_095093.1| cold shock domain-contain protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628405|gb|AAU27146.1| cold shock domain family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 87 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + Sbjct: 20 RGKVKWFNKDKGFGFIES-----SGKDYFVHFSSIQSNGFKTLPDGATVLF 65 >gi|126174687|ref|YP_001050836.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS155] gi|153000986|ref|YP_001366667.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS185] gi|160875699|ref|YP_001555015.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS195] gi|217973054|ref|YP_002357805.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS223] gi|304409064|ref|ZP_07390685.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183] gi|307303067|ref|ZP_07582822.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175] gi|125997892|gb|ABN61967.1| cold-shock DNA-binding protein family [Shewanella baltica OS155] gi|151365604|gb|ABS08604.1| putative cold-shock DNA-binding domain protein [Shewanella baltica OS185] gi|160861221|gb|ABX49755.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195] gi|217498189|gb|ACK46382.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223] gi|304352885|gb|EFM17282.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183] gi|306913427|gb|EFN43849.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175] gi|315267888|gb|ADT94741.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678] Length = 68 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI P+ + G+DVF H S + G L GQ V ++ Sbjct: 4 GTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVQFE 51 >gi|330954575|gb|EGH54835.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7] Length = 92 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI EG +S +D+F+H SA+ G L GQ V ++ Sbjct: 3 EGKVKWFNNAKGFGFINAEG--KSDEDLFVHFSAIEMEGYKTLKAGQKVRFE 52 >gi|89068841|ref|ZP_01156224.1| cold shock DNA-binding domain protein [Oceanicola granulosus HTCC2516] gi|89045611|gb|EAR51674.1| cold shock DNA-binding domain protein [Oceanicola granulosus HTCC2516] Length = 171 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 4/74 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW++P KG+GFI E + G D+ LH + + + G ++ +G + + VQ+ Sbjct: 1 MTVTGTVKWFDPAKGFGFIVAE---DGGPDILLHANVLRNFGQSSVADGSGIVVE-VQDT 56 Query: 61 ANGKYSAENLKLVP 74 GK + ++L P Sbjct: 57 PRGKQAVAVVELTP 70 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G E DVF+H + +GL +L G+ ++ V + GK + Sbjct: 100 VKWFDKGKGFGFANVFGLAE---DVFVHIEVLRRSGLSDLQPGEAISL-RVMDGKRGKMA 155 Query: 67 AE 68 E Sbjct: 156 ME 157 >gi|330815856|ref|YP_004359561.1| cold-shock DNA-binding protein family protein [Burkholderia gladioli BSR3] gi|327368249|gb|AEA59605.1| cold-shock DNA-binding protein family protein [Burkholderia gladioli BSR3] Length = 67 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + G L E Q V++D V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIKMDGFKTLKENQRVSFD-VKTGPKGK 59 Query: 65 YSAENLKLV 73 +A N++ V Sbjct: 60 QAA-NIQAV 67 >gi|40062712|gb|AAR37625.1| cold shock DNA-binding domain protein [uncultured marine bacterium 314] Length = 67 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N KGYGFI E + DVF+H SA +A L L EG +T++ D Sbjct: 1 MSIKGKVKWFNGAKGYGFIEREDKEK---DVFVHASAAEAASL-QLNEGDALTFEVESGD 56 >gi|289679173|ref|ZP_06500063.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae FF5] gi|330900613|gb|EGH32032.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. japonica str. M301072PT] Length = 91 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI EG+ E D+F H SA+ G L GQ V ++ Q Sbjct: 3 EGKVKWFNNAKGFGFINAEGNDE---DLFAHFSAIEMDGYKTLKAGQKVRFEVAQ 54 >gi|134097204|ref|YP_001102865.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291005339|ref|ZP_06563312.1| cold shock protein [Saccharopolyspora erythraea NRRL 2338] gi|133909827|emb|CAL99939.1| cold-shock DNA-binding domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 130 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KG+GF+T +G G+DV++ SA+ S G+ +L GQ V +D Q G+ Sbjct: 4 GRVKWFDAEKGFGFVTQDG----GEDVYVRASALPS-GVESLKTGQRVDFDMAQ----GR 54 Query: 65 YSAENLKL 72 + LK+ Sbjct: 55 RGPQALKV 62 >gi|160879311|ref|YP_001558279.1| cold-shock DNA-binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160427977|gb|ABX41540.1| cold-shock DNA-binding domain protein [Clostridium phytofermentans ISDg] Length = 70 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 5/57 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60 G++KWY+ ++GYGF+ ST G DVFLH S + G + EG+ + +D ++ + Sbjct: 6 GTVKWYDSERGYGFV----STNDGRDVFLHHSQIKEKGFDKEVHEGESIGFDIIEQE 58 >gi|332283634|ref|YP_004415545.1| cold shock protein [Pusillimonas sp. T7-7] gi|330427587|gb|AEC18921.1| cold shock protein [Pusillimonas sp. T7-7] Length = 69 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N +KG+GFI PE G D+F H + + G +L E Q V+Y Sbjct: 6 GIVKWFNNEKGFGFIKPE---SGGKDLFAHHTDIIGTGFKSLEENQRVSY 52 >gi|290476552|ref|YP_003469457.1| low-temperature-responsive gene, nucleic acid-binding domain [Xenorhabdus bovienii SS-2004] gi|289175890|emb|CBJ82693.1| low-temperature-responsive gene, nucleic acid-binding domain [Xenorhabdus bovienii SS-2004] Length = 70 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFI+PE ++ DVF+H SA+ L EGQ V + +++ A G Sbjct: 7 GLVKWFDAGKGFGFISPEDGSK---DVFVHFSAIQGNDFKTLDEGQKVEFS-IESGAKGP 62 Query: 65 YSAENLKL 72 +A + L Sbjct: 63 SAANVIAL 70 >gi|330446455|ref|ZP_08310107.1| cold shock domain protein CspD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490646|dbj|GAA04604.1| cold shock domain protein CspD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 73 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE + D+F H S + G L GQ V Y+ VQ G Sbjct: 4 GTVKWFNNAKGFGFICPE---DGEGDIFAHYSTIQMEGYRTLKAGQQVNYE-VQAGPKGY 59 Query: 65 YSAE 68 +++E Sbjct: 60 HASE 63 >gi|307823754|ref|ZP_07653982.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307735048|gb|EFO05897.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 71 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI +SG DVF+H + ++G + +L EGQ V + Q Sbjct: 7 GIVKWFNSDKGFGFI----EQQSGPDVFVHFQQINNSGGYKSLDEGQKVQFSVAQGQKGP 62 Query: 64 KYSAENLKLV 73 + AEN+ ++ Sbjct: 63 Q--AENVSVI 70 >gi|297624347|ref|YP_003705781.1| cold-shock DNA-binding domain-containing protein [Truepera radiovictrix DSM 17093] gi|297165527|gb|ADI15238.1| cold-shock DNA-binding domain protein [Truepera radiovictrix DSM 17093] Length = 84 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KG+GFI +G G DVF H SA+ ++G +L EG V ++ Q Sbjct: 4 GRVKWFSNEKGFGFIEQDG---GGADVFCHFSAINASGYRSLNEGDEVEFEVEQGQKG-- 58 Query: 65 YSAENLKLV 73 A+N++++ Sbjct: 59 LQAKNVEVI 67 >gi|254496781|ref|ZP_05109636.1| cold shock domain-contain protein [Legionella drancourtii LLAP12] gi|254354006|gb|EET12686.1| cold shock domain-contain protein [Legionella drancourtii LLAP12] Length = 68 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG +KW+N KG+GFI SG D F+H SA+ S+G L EG V + Sbjct: 6 RGKVKWFNESKGFGFI-----ENSGKDYFVHFSAIQSSGFKTLPEGANVLF 51 >gi|300722511|ref|YP_003711801.1| DNA replication inhibitor [Xenorhabdus nematophila ATCC 19061] gi|297629018|emb|CBJ89603.1| DNA replication inhibitor, nucleic acid-binding domain [Xenorhabdus nematophila ATCC 19061] Length = 76 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI P + GDD+F H S + G L GQ V + Q Sbjct: 4 GTVKWFNNAKGFGFICP---SSGGDDIFAHYSTIQMDGYRTLKAGQKVNFSVHQ 54 >gi|296272840|ref|YP_003655471.1| cold-shock DNA-binding domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097014|gb|ADG92964.1| cold-shock DNA-binding domain protein [Arcobacter nitrofigilis DSM 7299] Length = 72 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI E G DVF+H + S G +L EGQ VT++ + Sbjct: 7 GTVKWFNSEKGFGFIEQE---NGGKDVFVHYRQINSTGYGRVSLNEGQKVTFEVAE 59 >gi|170596965|ref|XP_001902961.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi] gi|158589027|gb|EDP28189.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi] Length = 290 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 7/59 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 +G++KW+N GYGFI ++GDD+F+H++AV L +L +G+ V +D V+ Sbjct: 59 QGTVKWFNVKNGYGFIN---RADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVE 114 >gi|302523740|ref|ZP_07276082.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] gi|302432635|gb|EFL04451.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] Length = 67 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI +G DVF+H S + G L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIAQDGGE---GDVFVHYSEIEGRGFRTLEENQRVEFEVGQ 54 >gi|227111587|ref|ZP_03825243.1| cold shock protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|253688227|ref|YP_003017417.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754805|gb|ACT12881.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 70 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ KG+GFITP+ ++ DVF+H SA+ S L EGQ V + Sbjct: 7 GLVKWFDAGKGFGFITPDNGSK---DVFVHFSAIQSNDFKTLDEGQKVEF 53 >gi|95929274|ref|ZP_01312018.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] gi|95134772|gb|EAT16427.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] Length = 66 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI ++G DVF+H S + G +L EG+ VT++ Sbjct: 3 EGTVKWFNDAKGFGFI----EQDNGPDVFVHFSEIQGDGFKSLAEGERVTFE 50 >gi|300716061|ref|YP_003740864.1| Cold-shock DNA-binding protein [Erwinia billingiae Eb661] gi|299061897|emb|CAX59013.1| Cold-shock DNA-binding protein [Erwinia billingiae Eb661] Length = 75 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI P G+D+F H S + G L GQ V +D Sbjct: 4 GTVKWFNNAKGFGFICP---VSGGEDIFAHYSTIKMDGYRTLKAGQQVQFD 51 >gi|261868109|ref|YP_003256031.1| cold shock domain-containing protein CspD [Aggregatibacter actinomycetemcomitans D11S-1] gi|293390022|ref|ZP_06634356.1| cold shock domain protein CspD [Aggregatibacter actinomycetemcomitans D7S-1] gi|261413441|gb|ACX82812.1| cold shock domain protein CspD [Aggregatibacter actinomycetemcomitans D11S-1] gi|290950556|gb|EFE00675.1| cold shock domain protein CspD [Aggregatibacter actinomycetemcomitans D7S-1] Length = 69 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI+ EGS D+F H S + G +L GQ V ++ + D Sbjct: 4 GVVKWFNNAKGFGFISVEGSD---TDIFAHYSVIEMEGYRSLKAGQKVRFEVIHGDKG-- 58 Query: 65 YSAENLKLVP 74 + K++P Sbjct: 59 --SHATKIIP 66 >gi|269123694|ref|YP_003306271.1| cold-shock DNA-binding domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268315020|gb|ACZ01394.1| cold-shock DNA-binding domain protein [Streptobacillus moniliformis DSM 12112] Length = 65 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI S E G D FLH S + G + EG+ V +D Sbjct: 3 GKVKWFNEKKGFGFI----SGEDGKDYFLHFSKINKGGFKTVNEGEEVEFD 49 >gi|326383466|ref|ZP_08205153.1| cold shock protein [Gordonia neofelifaecis NRRL B-59395] gi|326197872|gb|EGD55059.1| cold shock protein [Gordonia neofelifaecis NRRL B-59395] Length = 67 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P + GD DVF+H S + G L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIAP----DDGDADVFVHYSEIQGNGFRTLEEDQRVEFEVGQ 54 >gi|182420146|ref|ZP_02951377.1| conserved domain protein [Clostridium butyricum 5521] gi|237668829|ref|ZP_04528813.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375948|gb|EDT73538.1| conserved domain protein [Clostridium butyricum 5521] gi|237657177|gb|EEP54733.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 69 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 5/57 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 G++KWY+ +KGYGFI S + G+DVF H S + G +L EG+ VT+ ++D Sbjct: 6 GTVKWYDREKGYGFI----SCDEGNDVFAHHSQIKDNGPEKDLKEGESVTFSIEESD 58 >gi|116617815|ref|YP_818186.1| cold-shock DNA-binding protein family protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432308|ref|ZP_03914301.1| cold shock protein Csp [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116096662|gb|ABJ61813.1| cold-shock DNA-binding protein family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227351914|gb|EEJ42147.1| cold shock protein Csp [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 74 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++K + ++GYG+ITP+ E GDDVF+H + + G +L +G+ V Y VQ Sbjct: 4 GTVKIWQKERGYGYITPD---EGGDDVFVHFNGIDMDGFKSLIQGEKVAYVLVQ 54 >gi|330722048|gb|EGG99970.1| Cold shock protein CspA [gamma proteobacterium IMCC2047] Length = 69 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G++KW+N KGYGFI G DVF+H A+ G L +GQ V Y V++ Sbjct: 7 GTVKWFNNAKGYGFI----EHHDGQDVFVHYRAIRGEGYRKLNDGQEVEYSIVES 57 >gi|37725749|gb|AAO32343.1| cold shock protein 3 [Streptomyces sp. AA8321] Length = 65 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N +KG+GFI + G DVF H S + ++G +L E Q V ++ Q Sbjct: 4 GTVKWFNAEKGFGFIEQD---TGGPDVFAHYSNIRASGFRSLEEAQRVEFNVTQ 54 >gi|255535684|ref|YP_003096055.1| Cold shock protein CspA [Flavobacteriaceae bacterium 3519-10] gi|255341880|gb|ACU07993.1| Cold shock protein CspA [Flavobacteriaceae bacterium 3519-10] Length = 63 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFITP G+D+F+H S V + + E VTY+ Q Sbjct: 1 MQEGTVKFFNETKGFGFITP---LNGGEDIFVHTSGVNTK----IRENDKVTYEVQQ--G 51 Query: 62 NGKYSAENLKLV 73 N +A N+KLV Sbjct: 52 NKGLNAVNVKLV 63 >gi|148360277|ref|YP_001251484.1| cold shock domain family transporter protein [Legionella pneumophila str. Corby] gi|148282050|gb|ABQ56138.1| cold shock domain family protein [Legionella pneumophila str. Corby] Length = 73 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + Sbjct: 6 RGKVKWFNKDKGFGFI-----ESSGKDYFVHFSSIQSNGFKTLPDGATVLF 51 >gi|50121397|ref|YP_050564.1| cold shock protein [Pectobacterium atrosepticum SCRI1043] gi|227328628|ref|ZP_03832652.1| cold shock protein [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|261821404|ref|YP_003259510.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] gi|49611923|emb|CAG75372.1| cold shock protein [Pectobacterium atrosepticum SCRI1043] gi|261605417|gb|ACX87903.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] Length = 70 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ KG+GFITP+ ++ DVF+H SA+ S L EGQ V + Sbjct: 7 GLVKWFDAGKGFGFITPDNGSK---DVFVHFSAIQSNDFKTLDEGQKVEF 53 >gi|300856488|ref|YP_003781472.1| putative cold shock protein CspA [Clostridium ljungdahlii DSM 13528] gi|300436603|gb|ADK16370.1| predicted cold shock protein CspA [Clostridium ljungdahlii DSM 13528] Length = 67 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI G +DVF+H +A+ S NL EGQ V +D V+ G Sbjct: 4 GTVKWFNSEKGFGFIEVPGE----NDVFVHFTAIQSDEPRKNLEEGQKVQFD-VEEGPKG 58 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 59 LQAANVVKL 67 >gi|257057657|ref|YP_003135489.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] gi|256587529|gb|ACU98662.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] Length = 67 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI +G DVF+H S + G L E Q V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFIAQDGGE---GDVFVHYSEIEGRGFRTLEENQRVEFEVGQ 54 >gi|254506150|ref|ZP_05118294.1| cold shock domain protein CspD [Vibrio parahaemolyticus 16] gi|219550968|gb|EED27949.1| cold shock domain protein CspD [Vibrio parahaemolyticus 16] Length = 73 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI PEG E G DVF H S + G L GQ V ++ Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DVFAHYSTIQMDGYRTLKAGQQVNFE 51 >gi|152992263|ref|YP_001357984.1| cold shock protein [Sulfurovum sp. NBC37-1] gi|151424124|dbj|BAF71627.1| cold shock protein [Sulfurovum sp. NBC37-1] Length = 72 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA--SAGLFNLTEGQLVTYD 55 G++KW+N +KGYGFI E G DVF+H V + G L EGQ VT++ Sbjct: 7 GTVKWFNDEKGYGFIQQE---NGGSDVFVHFRQVNNDNGGRVTLAEGQAVTFE 56 >gi|293390613|ref|ZP_06634947.1| cold-shock DNA-binding domain protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951147|gb|EFE01266.1| cold-shock DNA-binding domain protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 69 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P ++ DVF+H S + L EG V Y+ VQ+ G Sbjct: 6 GTVKWFNSTKGFGFIAPANGSK---DVFVHFSGIVGNNFRTLNEGDRVAYN-VQDSQRGP 61 Query: 65 YSAE 68 + E Sbjct: 62 TAIE 65 >gi|254818580|ref|ZP_05223581.1| cold-shock DNA-binding protein family protein [Mycobacterium intracellulare ATCC 13950] Length = 67 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI P+ + DVF+H S + G +L E Q V ++ Q Sbjct: 3 QGTVKWFNGEKGFGFIAPD---DGSADVFVHYSEIQGGGYRSLEENQRVQFEVGQ 54 >gi|157962355|ref|YP_001502389.1| cold-shock DNA-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|167623650|ref|YP_001673944.1| cold-shock DNA-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|212634693|ref|YP_002311218.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3] gi|157847355|gb|ABV87854.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC 700345] gi|167353672|gb|ABZ76285.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis HAW-EB4] gi|212556177|gb|ACJ28631.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3] Length = 68 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI P+ G+DVF H S + G L GQ V+++ Sbjct: 4 GTVKWFNNAKGFGFICPDA---GGEDVFAHYSTIEMEGYRTLKAGQPVSFE 51 >gi|56707540|ref|YP_169436.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU S4] gi|89255867|ref|YP_513229.1| cold shock protein [Francisella tularensis subsp. holarctica LVS] gi|110670011|ref|YP_666568.1| cold shock protein [Francisella tularensis subsp. tularensis FSC198] gi|115314356|ref|YP_763079.1| cold shock protein [Francisella tularensis subsp. holarctica OSU18] gi|118497088|ref|YP_898138.1| cold shock protein [Francisella tularensis subsp. novicida U112] gi|134302526|ref|YP_001122496.1| cold shock protein [Francisella tularensis subsp. tularensis WY96-3418] gi|156501851|ref|YP_001427916.1| cold-shock DNA-binding domain-containing protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010093|ref|ZP_02275024.1| hypothetical protein Ftulh_05064 [Francisella tularensis subsp. holarctica FSC200] gi|187931344|ref|YP_001891328.1| cold shock protein, DNA-binding [Francisella tularensis subsp. mediasiatica FSC147] gi|194323385|ref|ZP_03057162.1| cold-shock' DNA-binding domain, putative [Francisella tularensis subsp. novicida FTE] gi|208778881|ref|ZP_03246227.1| cold-shock' DNA-binding domain protein, putative [Francisella novicida FTG] gi|224456609|ref|ZP_03665082.1| cold shock protein, DNA-binding [Francisella tularensis subsp. tularensis MA00-2987] gi|254367231|ref|ZP_04983259.1| cold shock protein [Francisella tularensis subsp. holarctica 257] gi|254368706|ref|ZP_04984719.1| cold shock protein [Francisella tularensis subsp. holarctica FSC022] gi|254370063|ref|ZP_04986069.1| cold shock protein [Francisella tularensis subsp. tularensis FSC033] gi|254372452|ref|ZP_04987941.1| hypothetical protein FTCG_00012 [Francisella tularensis subsp. novicida GA99-3549] gi|254373914|ref|ZP_04989396.1| cold shock DNA binding protein [Francisella novicida GA99-3548] gi|254874358|ref|ZP_05247068.1| cold shock protein cspC [Francisella tularensis subsp. tularensis MA00-2987] gi|290953337|ref|ZP_06557958.1| cold shock protein, DNA-binding [Francisella tularensis subsp. holarctica URFT1] gi|295313426|ref|ZP_06804032.1| cold shock protein, DNA-binding [Francisella tularensis subsp. holarctica URFT1] gi|56604032|emb|CAG45024.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU S4] gi|89143698|emb|CAJ78897.1| cold shock protein [Francisella tularensis subsp. holarctica LVS] gi|110320344|emb|CAL08407.1| cold shock protein [Francisella tularensis subsp. tularensis FSC198] gi|115129255|gb|ABI82442.1| cold shock protein [Francisella tularensis subsp. holarctica OSU18] gi|118422994|gb|ABK89384.1| cold shock protein, DNA-binding [Francisella novicida U112] gi|134050303|gb|ABO47374.1| cold shock DNA binding protein [Francisella tularensis subsp. tularensis WY96-3418] gi|134253049|gb|EBA52143.1| cold shock protein [Francisella tularensis subsp. holarctica 257] gi|151568307|gb|EDN33961.1| cold shock protein [Francisella tularensis subsp. tularensis FSC033] gi|151570179|gb|EDN35833.1| hypothetical protein FTCG_00012 [Francisella novicida GA99-3549] gi|151571634|gb|EDN37288.1| cold shock DNA binding protein [Francisella novicida GA99-3548] gi|156252454|gb|ABU60960.1| 'Cold-shock' DNA-binding domain protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121627|gb|EDO65797.1| cold shock protein [Francisella tularensis subsp. holarctica FSC022] gi|187712253|gb|ACD30550.1| cold shock protein, DNA-binding [Francisella tularensis subsp. mediasiatica FSC147] gi|194322240|gb|EDX19721.1| cold-shock' DNA-binding domain, putative [Francisella tularensis subsp. novicida FTE] gi|208744681|gb|EDZ90979.1| cold-shock' DNA-binding domain protein, putative [Francisella novicida FTG] gi|254840357|gb|EET18793.1| cold shock protein cspC [Francisella tularensis subsp. tularensis MA00-2987] gi|282158694|gb|ADA78085.1| hypothetical protein NE061598_02185 [Francisella tularensis subsp. tularensis NE061598] gi|328675625|gb|AEB28300.1| Cold shock protein CspA [Francisella cf. novicida 3523] gi|328676549|gb|AEB27419.1| Cold shock protein CspA [Francisella cf. novicida Fx1] Length = 67 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 6/52 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++K++N KG+GFITPE G DVF+H S + L EGQ VT++ Sbjct: 6 QGTVKFFNEQKGFGFITPE---NGGKDVFVHISKLNGE---TLAEGQQVTFE 51 >gi|238026492|ref|YP_002910723.1| Cold-shock DNA-binding domain-containing protein [Burkholderia glumae BGR1] gi|237875686|gb|ACR28019.1| Cold-shock DNA-binding domain protein [Burkholderia glumae BGR1] Length = 67 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + G L E Q V++D V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKTGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|300857641|ref|YP_003782624.1| cold shock-like protein A [Corynebacterium pseudotuberculosis FRC41] gi|300685095|gb|ADK28017.1| cold shock-like protein A [Corynebacterium pseudotuberculosis FRC41] gi|302205379|gb|ADL09721.1| Cold-shock protein [Corynebacterium pseudotuberculosis C231] gi|302329933|gb|ADL20127.1| Cold-shock protein [Corynebacterium pseudotuberculosis 1002] gi|308275617|gb|ADO25516.1| Cold-shock protein [Corynebacterium pseudotuberculosis I19] Length = 67 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KG+GFI P+ + DVF+H S + G L E Q V ++ Sbjct: 3 QGTVKWFNAEKGFGFIAPD---DGSADVFVHYSEIQGNGFRTLEENQKVEFE 51 >gi|296106679|ref|YP_003618379.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy] gi|295648580|gb|ADG24427.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy] Length = 69 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + Sbjct: 6 RGKVKWFNKDKGFGFI-----ESSGKDYFVHFSSIQSDGFKTLPDGATVLF 51 >gi|157105290|ref|XP_001648803.1| RNA-binding protein lin-28 [Aedes aegypti] gi|108880147|gb|EAT44372.1| RNA-binding protein lin-28 [Aedes aegypti] Length = 157 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 RG KW+N KG+GFITP+ + G DVF+H+S + G +L + + V ++ Sbjct: 2 RGLCKWFNVIKGWGFITPD---DGGQDVFVHQSVLQMEGFRSLGQNEPVEFE 50 >gi|331017260|gb|EGH97316.1| cold shock domain family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 77 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G + +D+F H SA+ G L GQ V ++ +Q Sbjct: 6 GKVKWFNNAKGYGFILEDGKPD--EDLFAHYSAIQMDGYKTLKAGQPVRFEIIQ 57 >gi|87122219|ref|ZP_01078102.1| cold-shock protein CspD [Marinomonas sp. MED121] gi|86162539|gb|EAQ63821.1| cold-shock protein CspD [Marinomonas sp. MED121] Length = 92 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +H G++KW+N KGYGFI E E D+F+H S++ G L GQ V++ Sbjct: 1 MHHGTVKWFNNAKGYGFIVSESFEE---DLFIHYSSILIDGYKTLKAGQSVSF 50 >gi|325578326|ref|ZP_08148461.1| cold shock domain protein CspD [Haemophilus parainfluenzae ATCC 33392] gi|301156234|emb|CBW15705.1| cold shock protein homolog [Haemophilus parainfluenzae T3T1] gi|325160062|gb|EGC72191.1| cold shock domain protein CspD [Haemophilus parainfluenzae ATCC 33392] Length = 69 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI+ EG D+F H SA+ G +L GQ V ++ + D Sbjct: 4 GVVKWFNNAKGFGFISAEGVD---TDIFAHYSAIEMDGYRSLKAGQRVQFEVIHGDKG-- 58 Query: 65 YSAENLKLVP 74 + K++P Sbjct: 59 --SHATKIIP 66 >gi|256397197|ref|YP_003118761.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256363423|gb|ACU76920.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 131 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G IKWY+ +KG+GFIT + G DVF+H SA+ AG L GQ V + Sbjct: 4 GKIKWYDTEKGFGFIT----RDDGPDVFMHSSAL-PAGTAELKSGQRVEF 48 >gi|296445795|ref|ZP_06887747.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] gi|296256623|gb|EFH03698.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] Length = 221 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW++ KG+GF+ S + G DVF+H S + +G+ +L EGQ VT V Sbjct: 158 GKVKWFDETKGFGFVQ---SNDGGKDVFVHISILGPSGVNHLAEGQPVTMQVV 207 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 +KW+ P+KG+GF+ T D FLH AV +AG L G Sbjct: 60 VKWFKPEKGFGFVELGNGT---GDAFLHIGAVQAAGYDALPPG 99 >gi|54293997|ref|YP_126412.1| hypothetical protein lpl1057 [Legionella pneumophila str. Lens] gi|53753829|emb|CAH15294.1| hypothetical protein lpl1057 [Legionella pneumophila str. Lens] gi|307609825|emb|CBW99342.1| hypothetical protein LPW_11201 [Legionella pneumophila 130b] Length = 69 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + Sbjct: 6 RGKVKWFNKDKGFGFI-----ESSGKDYFVHFSSIQSDGFKTLPDGAAVLF 51 >gi|77462899|ref|YP_352403.1| cold-shock DNA-binding protein family protein [Rhodobacter sphaeroides 2.4.1] gi|126461790|ref|YP_001042904.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221638771|ref|YP_002525033.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] gi|332557790|ref|ZP_08412112.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides WS8N] gi|77387317|gb|ABA78502.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides 2.4.1] gi|126103454|gb|ABN76132.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17029] gi|221159552|gb|ACM00532.1| Cold-shock DNA-binding protein family precursor [Rhodobacter sphaeroides KD131] gi|332275502|gb|EGJ20817.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 180 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 5/74 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +VH G +KW++P KG+GFI E E+G D+ LH + + + G ++ +G +T VQ+ Sbjct: 10 LVH-GRVKWFDPAKGFGFIVTE---ENGADILLHANVLRNYGQSSVADGAGITVK-VQST 64 Query: 61 ANGKYSAENLKLVP 74 G + E +++ P Sbjct: 65 QRGVQAVEVIEIEP 78 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GF G E DVF+H + +G +L G+ V ++ Sbjct: 106 GRVKWFDKGKGFGFANVFGRPE---DVFIHVEVLRMSGFADLAAGEAVALRIIE 156 >gi|319956775|ref|YP_004168038.1| cold-shock DNA-binding protein family [Nitratifractor salsuginis DSM 16511] gi|319419179|gb|ADV46289.1| cold-shock DNA-binding protein family [Nitratifractor salsuginis DSM 16511] Length = 72 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV--ASAGLFNLTEGQLVTYD 55 +H G++KW+N +KGYGFI + G+DVF+H V G +L EGQ V+++ Sbjct: 4 LHHGTVKWFNDEKGYGFIQQD---NGGNDVFVHFRQVNNPEGGRVSLYEGQKVSFE 56 >gi|28870519|ref|NP_793138.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28853767|gb|AAO56833.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 89 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G + +D+F H SA+ G L GQ V ++ +Q Sbjct: 4 GKVKWFNNAKGYGFILEDGKPD--EDLFAHYSAIQMDGYKTLKAGQPVRFEIIQ 55 >gi|312881480|ref|ZP_07741272.1| cold shock-like protein CspD [Vibrio caribbenthicus ATCC BAA-2122] gi|309370846|gb|EFP98306.1| cold shock-like protein CspD [Vibrio caribbenthicus ATCC BAA-2122] Length = 73 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI PEG E G DVF H S + G L GQ V ++ Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DVFAHYSTIQMDGYRTLKAGQQVNFE 51 >gi|255324199|ref|ZP_05365321.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311741029|ref|ZP_07714854.1| cold shock protein CspA [Corynebacterium pseudogenitalium ATCC 33035] gi|255298715|gb|EET78010.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311303831|gb|EFQ79909.1| cold shock protein CspA [Corynebacterium pseudogenitalium ATCC 33035] Length = 67 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++KW+N +KGYGFI + D+F+H S + +G L E Q VT++ Sbjct: 3 QGTVKWFNSEKGYGFIE---RADGEGDIFVHYSEIQGSGFRTLEENQQVTFE 51 >gi|323499460|ref|ZP_08104431.1| cold shock-like protein CspD [Vibrio sinaloensis DSM 21326] gi|323315447|gb|EGA68487.1| cold shock-like protein CspD [Vibrio sinaloensis DSM 21326] Length = 73 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI PEG E G DVF H S + G L GQ V ++ Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DVFAHYSTIQMDGYRTLKAGQQVNFE 51 >gi|83313007|ref|YP_423271.1| cold shock protein [Magnetospirillum magneticum AMB-1] gi|82947848|dbj|BAE52712.1| Cold shock protein [Magnetospirillum magneticum AMB-1] Length = 200 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 ++KW+N KG+GF+ P ++ D FLH SA+ AGL + EG + D Sbjct: 52 TVKWFNASKGFGFVAP---SDGSPDAFLHISALERAGLTQVAEGATLVVDL 99 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G +K+++ +KG+GF+ + G DVF+H A+ +G+ L GQ V Sbjct: 137 GVVKFFSAEKGFGFV---ACDQGGKDVFVHVKALERSGIKTLESGQRV 181 >gi|254481420|ref|ZP_05094665.1| putative 'Cold-shock' DNA-binding domain protein [marine gamma proteobacterium HTCC2148] gi|214038583|gb|EEB79245.1| putative 'Cold-shock' DNA-binding domain protein [marine gamma proteobacterium HTCC2148] Length = 70 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFIT E E DVF+H ++ G L EGQ V + ++ Sbjct: 7 GTVKWFNNAKGFGFITRE---EEDADVFVHFRSIEGDGYRTLNEGQEVEFSLIE 57 >gi|85001185|ref|XP_955311.1| cold shock protein [Theileria annulata strain Ankara] gi|65303457|emb|CAI75835.1| cold shock protein, putative [Theileria annulata] Length = 95 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G KW+N KGYGFIT E+G+DVF+H+S + + G +L E + V + + ++ K Sbjct: 6 GVCKWFNNKKGYGFIT----LENGEDVFVHQSEIYADGFRSLHENEKVELEVIMDNNRKK 61 >gi|66046414|ref|YP_236255.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|63257121|gb|AAY38217.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|330972895|gb|EGH72961.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris str. M302273PT] Length = 92 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI EG +S +D+F+H SA+ G L GQ V ++ Sbjct: 3 EGKVKWFNNAKGFGFINAEG--KSDEDLFVHFSAIEMDGYKTLKAGQKVRFE 52 >gi|77459814|ref|YP_349321.1| cold-shock DNA-binding protein family protein [Pseudomonas fluorescens Pf0-1] gi|77383817|gb|ABA75330.1| cold shock-like protein CspD [Pseudomonas fluorescens Pf0-1] Length = 93 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%) Query: 5 GSIKWYNPDKGYGFI---TPEGSTESGD--DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI + EG E G D F H SA+ G L GQ+V ++ VQ Sbjct: 4 GKVKWFNNAKGFGFINTDSREGKDEDGKEIDFFAHYSAIEMDGYKTLKAGQIVKFEIVQ 62 >gi|315633923|ref|ZP_07889212.1| CspA family cold shock transcriptional regulator [Aggregatibacter segnis ATCC 33393] gi|315477173|gb|EFU67916.1| CspA family cold shock transcriptional regulator [Aggregatibacter segnis ATCC 33393] Length = 69 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI PE ++ DVF+H S + L EG V ++ VQ+ G Sbjct: 6 GTVKWFNSTKGFGFIAPEDGSK---DVFVHFSGIVGNNFRTLNEGDRVAFN-VQDSQRGP 61 Query: 65 YSAE 68 + + Sbjct: 62 TAVD 65 >gi|323493244|ref|ZP_08098373.1| cold shock-like protein CspD [Vibrio brasiliensis LMG 20546] gi|323312510|gb|EGA65645.1| cold shock-like protein CspD [Vibrio brasiliensis LMG 20546] Length = 73 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI PEG E G DVF H S + G L GQ V ++ Sbjct: 4 GTVKWFNNAKGFGFICPEG--EDG-DVFAHYSTIKMDGYRTLKAGQQVNFE 51 >gi|221234388|ref|YP_002516824.1| cold shock protein CspD [Caulobacter crescentus NA1000] gi|220963560|gb|ACL94916.1| cold shock protein cspD [Caulobacter crescentus NA1000] Length = 196 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G +KW++ KGYGFI P+ ++G DV LH +++ + G EG ++ D V+ Sbjct: 20 GKVKWFDAGKGYGFIVPDDPGQTGLKDVLLHVTSLRNCGRETAMEGAIIVCDVVRR 75 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KW+N KGYGF+ + E G D+F+H + GL +L G V + + Sbjct: 133 VKWFNRTKGYGFVIRD--AEPG-DIFVHIETLRRGGLEDLQPGDDVLVRFAR 181 >gi|240850648|ref|YP_002972048.1| cold shock protein [Bartonella grahamii as4aup] gi|240267771|gb|ACS51359.1| cold shock protein [Bartonella grahamii as4aup] Length = 191 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N DKGYGF++ TE D+F+H + GL L GQ+V + + + Sbjct: 117 LERAIVKWFNRDKGYGFLSRGQGTE---DIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMTAE 179 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G IKW++ KGYGFI P+ D+ LH + + G EG V Sbjct: 28 GVIKWFDGSKGYGFIVPD--LPHFPDILLHVTVMRRDGFQTALEGAKV 73 >gi|146277100|ref|YP_001167259.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555341|gb|ABP69954.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17025] Length = 180 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 5/76 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +VH G +KW++P KG+GFI E E+G D+ LH + + + G ++ +G +T VQ+ Sbjct: 10 LVH-GRVKWFDPAKGFGFIVTE---ENGADILLHANVLRNYGQSSVADGAGITVK-VQST 64 Query: 61 ANGKYSAENLKLVPKS 76 G + E +++ P + Sbjct: 65 QRGVQAVEVVEIEPPA 80 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GF G +E DVF+H + +G +L G+ V ++ Sbjct: 106 GRVKWFDKGKGFGFANVFGRSE---DVFIHVEVLRMSGFADLAAGEAVALRIIE 156 >gi|24658520|ref|NP_647983.1| lin-28 [Drosophila melanogaster] gi|75027386|sp|Q9VRN5|LIN28_DROME RecName: Full=Protein lin-28 homolog gi|21842295|gb|AAM77748.1|AF521096_1 RNA-binding protein LIN-28 [Drosophila melanogaster] gi|21392070|gb|AAM48389.1| RE05342p [Drosophila melanogaster] gi|23094110|gb|AAF50758.2| lin-28 [Drosophila melanogaster] gi|220947728|gb|ACL86407.1| lin-28-PA [synthetic construct] gi|220957108|gb|ACL91097.1| lin-28-PA [synthetic construct] Length = 195 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 V G KW+N KG+GF+TP + G +VF+H+S + +G +L E + V ++ Sbjct: 37 CVRLGKCKWFNVAKGWGFLTP---NDGGQEVFVHQSVIQMSGFRSLGEQEEVEFE 88 >gi|126735666|ref|ZP_01751411.1| cold shock DNA-binding domain protein [Roseobacter sp. CCS2] gi|126714853|gb|EBA11719.1| cold shock DNA-binding domain protein [Roseobacter sp. CCS2] Length = 190 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GF+ E E G D+ LH + + + G ++ +G ++ VQ+ G Sbjct: 29 GQVKWFDPTKGFGFVVSE---EGGPDILLHANVLRNYGQGSVVDGSAISI-MVQDTQRGL 84 Query: 65 YSAENLKLVPKSSN 78 + E L + P + Sbjct: 85 QATEVLSITPPETE 98 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +KW++ KG+GF G+ E DVF+H + +GL +L G+ + V + Sbjct: 119 IEPARVKWFDKAKGFGFANVFGNNE---DVFVHVEVLRRSGLSDLQSGEAIGIRMVDGE- 174 Query: 62 NGKYSAE 68 G+ + E Sbjct: 175 RGRMAIE 181 >gi|307720566|ref|YP_003891706.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica DSM 16294] gi|306978659|gb|ADN08694.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica DSM 16294] Length = 72 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS--AGLFNLTEGQLVTYD 55 + GS+KW+N +KGYGFI + G DVF+H V + G +L EGQ VT++ Sbjct: 4 LQDGSVKWFNDEKGYGFIQQD---NGGKDVFVHFRQVNNNGGGRVSLAEGQRVTFE 56 >gi|120611988|ref|YP_971666.1| cold-shock DNA-binding protein family protein [Acidovorax citrulli AAC00-1] gi|120590452|gb|ABM33892.1| cold-shock DNA-binding protein family [Acidovorax citrulli AAC00-1] Length = 70 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI P+ + G D+F H + G L E Q V ++ Q A G Sbjct: 6 GIVKWFNEGKGFGFIAPD---DGGKDLFAHFREIQGGGFKTLAENQHVQFEVTQG-AKGP 61 Query: 65 YSAENLKLV 73 A N+++V Sbjct: 62 -QASNIRVV 69 >gi|323493049|ref|ZP_08098183.1| cold shock protein CspE [Vibrio brasiliensis LMG 20546] gi|323312697|gb|EGA65827.1| cold shock protein CspE [Vibrio brasiliensis LMG 20546] Length = 50 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 4/46 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ Sbjct: 7 GTVKWFNETKGFGFI----QQENGPDVFAHFSAITGDGFRTLVEGQ 48 >gi|302185011|ref|ZP_07261684.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae 642] Length = 92 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 10/77 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI EG +S +D+F+H SA+ G L GQ V ++ A+G Sbjct: 3 EGKVKWFNNAKGFGFINAEG--KSDEDLFVHFSAIEMDGYKTLKAGQKVRFEV----AHG 56 Query: 64 KYSAENLKL----VPKS 76 + +K+ VPK Sbjct: 57 PKGLQAIKINGSDVPKQ 73 >gi|290473959|ref|YP_003466833.1| DNA replication inhibitor, nucleic acid-binding domain [Xenorhabdus bovienii SS-2004] gi|289173266|emb|CBJ80041.1| DNA replication inhibitor, nucleic acid-binding domain [Xenorhabdus bovienii SS-2004] Length = 76 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI P GDD+F H S + G L GQ V + Q Sbjct: 4 GTVKWFNNAKGFGFICP---ASGGDDIFAHYSTIQMDGYRTLKAGQKVNFSIHQ 54 >gi|262274512|ref|ZP_06052323.1| cold shock protein CspD [Grimontia hollisae CIP 101886] gi|262221075|gb|EEY72389.1| cold shock protein CspD [Grimontia hollisae CIP 101886] Length = 73 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P+ E D+F H S + G L GQ V Y+ VQ G Sbjct: 4 GTVKWFNNAKGFGFICPD---EGEGDIFAHYSTIQMDGYRTLKAGQTVNYE-VQEGPKGY 59 Query: 65 YSAENLKLVP 74 ++++ +VP Sbjct: 60 HASQ---IVP 66 >gi|238753510|ref|ZP_04614873.1| Cold shock-like protein [Yersinia ruckeri ATCC 29473] gi|238708463|gb|EEQ00818.1| Cold shock-like protein [Yersinia ruckeri ATCC 29473] Length = 69 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 M+ G +KW+N KGYGFI+P + G DV++ ++A+A+ +L+EGQ V + Sbjct: 2 MLKMGRVKWFNQLKGYGFISP---LDGGLDVYVSKTAIANTKNKSLSEGQNVEF 52 >gi|301381401|ref|ZP_07229819.1| cold shock domain family protein [Pseudomonas syringae pv. tomato Max13] gi|302058399|ref|ZP_07249940.1| cold shock domain family protein [Pseudomonas syringae pv. tomato K40] gi|302130352|ref|ZP_07256342.1| cold shock domain family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 91 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G + +D+F H SA+ G L GQ V ++ +Q Sbjct: 6 GKVKWFNNAKGYGFILEDG--KPNEDLFAHYSAIQMDGYKTLKAGQSVRFEIIQ 57 >gi|85058123|ref|YP_453825.1| major cold shock protein [Sodalis glossinidius str. 'morsitans'] gi|84778643|dbj|BAE73420.1| major cold shock protein [Sodalis glossinidius str. 'morsitans'] Length = 70 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + Q Sbjct: 7 GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQRVEFTIEQ 57 >gi|206895854|ref|YP_002247469.1| hypothetical protein COPRO5265_1161 [Coprothermobacter proteolyticus DSM 5265] gi|206738471|gb|ACI17549.1| conserved domain protein [Coprothermobacter proteolyticus DSM 5265] Length = 89 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW++ KGYGFIT + + DVF+H SA+ G +L +G V ++ V Sbjct: 23 MYTGTVKWFDAKKGYGFITRD---DGEGDVFVHFSAIEGNGFKSLDQGDKVEFEIV---- 75 Query: 62 NGKYSAENLKLVPK 75 NG + K+V K Sbjct: 76 NGPKGPQAAKVVKK 89 >gi|288961931|ref|YP_003452241.1| cold-shock DNA-binding domain protein [Azospirillum sp. B510] gi|288914211|dbj|BAI75697.1| cold-shock DNA-binding domain protein [Azospirillum sp. B510] Length = 204 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 5/55 (9%) Query: 5 GSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 ++KW+ P+KG+GF+ +GS E+ FLH S +A+A L N EG V D Q Sbjct: 11 ATVKWFKPEKGFGFVRLADGSGEA----FLHASVLAAASLPNPVEGTTVVCDLAQ 61 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G+++WYN D G I P E G V+ R+ + +GL + +G+ V Y Sbjct: 141 GTVRWYNLDSQSGLIEP---WEDGATVYFDRATLRQSGLDIVADGEDVRY 187 >gi|237785049|ref|YP_002905754.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385] gi|237757961|gb|ACR17211.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385] Length = 130 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++PDKG+GF+T G DDVF+ + V G+ L +GQ + Y++ A G+ Sbjct: 4 GRVKWFDPDKGFGFVTNPGD----DDVFVG-TQVLPDGVEELHQGQKIEYEF----AAGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 KGPQVLRI 62 >gi|254459315|ref|ZP_05072736.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales bacterium GD 1] gi|207083928|gb|EDZ61219.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales bacterium GD 1] Length = 72 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTEGQLVTYD 55 G++KW+N +KG+GFI E G DVF+H V S G +L EGQ VT++ Sbjct: 7 GTVKWFNSEKGFGFIEQE---NGGKDVFVHFRQVNSNGYDRVSLNEGQKVTFE 56 >gi|268315810|ref|YP_003289529.1| cold-shock DNA-binding domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333344|gb|ACY47141.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM 4252] Length = 95 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 6/54 (11%) Query: 4 RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYD 55 RG +KW++ KGYGFI PEG G D+F+H S + S F L GQ+V ++ Sbjct: 5 RGVVKWFDAKKGYGFIIHPEG----GADIFVHYSQIISERRFKTLRTGQIVEFE 54 >gi|315605470|ref|ZP_07880508.1| cold shock protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312816|gb|EFU60895.1| cold shock protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 69 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRS-AVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFITP+ + DVF+H S V +G L EG+ V Y+ ++ Sbjct: 4 GTVKWFNDAKGFGFITPD---DRSVDVFVHYSNIVGQSGRRTLMEGERVEYEAIE 55 >gi|29377403|ref|NP_816557.1| cold-shock domain-contain protein [Enterococcus faecalis V583] gi|29344870|gb|AAO82627.1| cold-shock domain family protein [Enterococcus faecalis V583] Length = 67 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K +N +GYGFI E G ++F+H++ + G L EGQ V Y+ + + G+ Sbjct: 4 GTVKSFNHKRGYGFIIAE----DGSEIFVHQTGICMPGFRKLLEGQAVEYETAEYE--GR 57 Query: 65 YSAENLKLV 73 A N+ ++ Sbjct: 58 TKAVNVTVI 66 >gi|118616153|ref|YP_904485.1| cold shock-like protein B CspB [Mycobacterium ulcerans Agy99] gi|118568263|gb|ABL03014.1| cold shock-like protein B CspB [Mycobacterium ulcerans Agy99] Length = 184 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ DKG+GF+ S E G+DV++ RS+ AG+ L GQ V + A Sbjct: 51 VPTGKVKWYDSDKGFGFL----SQEEGEDVYV-RSSALPAGVEGLKAGQRVEFGI----A 101 Query: 62 NGKYSAENLKL 72 +G+ + L L Sbjct: 102 SGRRGPQALSL 112 >gi|52425150|ref|YP_088287.1| CspC protein [Mannheimia succiniciproducens MBEL55E] gi|52307202|gb|AAU37702.1| CspC protein [Mannheimia succiniciproducens MBEL55E] Length = 69 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI EGS D+F H S + G +L GQ V ++ V G+ Sbjct: 4 GVVKWFNNAKGFGFINAEGSDA---DIFAHYSVIEMDGYRSLKAGQKVNFEVVH----GE 56 Query: 65 YSAENLKLVP 74 + K++P Sbjct: 57 KGSHATKIIP 66 >gi|213970046|ref|ZP_03398178.1| cold shock domain family protein [Pseudomonas syringae pv. tomato T1] gi|213925150|gb|EEB58713.1| cold shock domain family protein [Pseudomonas syringae pv. tomato T1] Length = 89 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KGYGFI +G + +D+F H SA+ G L GQ V ++ +Q Sbjct: 4 GKVKWFNNAKGYGFILEDG--KPNEDLFAHYSAIQMDGYKTLKAGQSVRFEIIQ 55 >gi|258654840|ref|YP_003203996.1| cold-shock DNA-binding domain-containing protein [Nakamurella multipartita DSM 44233] gi|258558065|gb|ACV81007.1| cold-shock DNA-binding domain protein [Nakamurella multipartita DSM 44233] Length = 129 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 8/68 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKWY+ DKG+GFI +G GDDV + RS+ AG+ L GQ V + A+G+ Sbjct: 4 GKIKWYDADKGFGFIAQDG---GGDDVHV-RSSALPAGVATLKPGQKVEFGV----ADGR 55 Query: 65 YSAENLKL 72 + L++ Sbjct: 56 RGPQALQV 63 >gi|206579907|ref|YP_002240730.1| 'cold-shock' DNA-binding domain protein [Klebsiella pneumoniae 342] gi|206568965|gb|ACI10741.1| 'cold-shock' DNA-binding domain protein [Klebsiella pneumoniae 342] Length = 72 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI+P + D+F+H SA+ L EGQ V + + D Sbjct: 7 GLVKWFNEDKGFGFISP---LDGSKDIFVHLSALNGDNFKTLFEGQKVEFAIHRGDKGP- 62 Query: 65 YSAENLKLVPK 75 +A N+ L K Sbjct: 63 -AAANVTLCDK 72 >gi|77918392|ref|YP_356207.1| cold shock proteins [Pelobacter carbinolicus DSM 2380] gi|77544475|gb|ABA88037.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus DSM 2380] Length = 66 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI ++G DVF+H S + G +L EG V ++ Q Sbjct: 4 GTVKWFNDAKGFGFI----EQDNGPDVFVHFSEIQGEGFKSLAEGDRVVFEVTQ 53 >gi|296394697|ref|YP_003659581.1| cold-shock DNA-binding domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181844|gb|ADG98750.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM 44985] Length = 68 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 4/52 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYD 55 G++KW+N +KG+GFI PE ++ D+F+H + + G F L EGQ V ++ Sbjct: 4 GTVKWFNEEKGFGFIAPEDGSK---DLFVHFTGIVENGGFRTLHEGQRVQFE 52 >gi|170022693|ref|YP_001719198.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|169749227|gb|ACA66745.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] Length = 70 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFI+P + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 AAVNVIAL 70 >gi|170585110|ref|XP_001897330.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi] gi|158595278|gb|EDP33845.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi] Length = 205 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 28/37 (75%), Gaps = 3/37 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37 ++ G+ KW+N KGYGFITP+ E GDDVF+H+++ Sbjct: 7 VIQVGTCKWFNVLKGYGFITPD---EGGDDVFVHQAS 40 >gi|91226275|ref|ZP_01261115.1| cold-shock DNA-binding domain protein [Vibrio alginolyticus 12G01] gi|91189286|gb|EAS75565.1| cold-shock DNA-binding domain protein [Vibrio alginolyticus 12G01] Length = 69 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI S ++GDD+F+H ++ G L EG V++ Sbjct: 7 GTVKWFNETKGFGFI----SQQNGDDLFVHFRSILGDGFKKLVEGDKVSF 52 >gi|289828079|ref|ZP_06546191.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 45 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 3/43 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46 +G++KW+N KG+GFITPE ++ DVF+H SA+ + G L Sbjct: 5 KGNVKWFNESKGFGFITPEDGSK---DVFVHFSAIQTNGFKTL 44 >gi|163751227|ref|ZP_02158455.1| stress response protein CspD [Shewanella benthica KT99] gi|294140596|ref|YP_003556574.1| stress response protein CspD [Shewanella violacea DSS12] gi|161328941|gb|EDQ00015.1| stress response protein CspD [Shewanella benthica KT99] gi|293327065|dbj|BAJ01796.1| stress response protein CspD [Shewanella violacea DSS12] Length = 68 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI P+ G+DVF H S + G L GQ V ++ Sbjct: 4 GTVKWFNNAKGFGFICPDA---GGEDVFAHYSTIEMEGYRTLKAGQPVQFE 51 >gi|295705597|ref|YP_003598672.1| cold shock protein [Bacillus megaterium DSM 319] gi|294803256|gb|ADF40322.1| cold shock protein [Bacillus megaterium DSM 319] Length = 70 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 H+G++K +N KG GFITP+ ++ +VF H +A+ NL+EGQ V ++ Sbjct: 4 HKGTVKSFNESKGSGFITPKNGSK---EVFFHSNAIDREEYKNLSEGQKVEFE 53 >gi|283768673|ref|ZP_06341585.1| cold-shock DNA-binding domain protein [Bulleidia extructa W1219] gi|283105065|gb|EFC06437.1| cold-shock DNA-binding domain protein [Bulleidia extructa W1219] Length = 70 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 7/71 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYDYVQNDA 61 G +KW++ KGYGFIT S + G D+F+H SA+ G L EGQ V ++ V+ Sbjct: 4 GKVKWFDDQKGYGFIT---SDDEGKDIFVHFSAIKEGDENGHKTLKEGQAVQFE-VEEGE 59 Query: 62 NGKYSAENLKL 72 G +++ KL Sbjct: 60 KGPHASNVEKL 70 >gi|307136096|gb|ADN33944.1| cold-shock DNA-binding family protein [Cucumis melo subsp. melo] Length = 272 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G ++W+N KG+GFI P+ G D+F+H+S++ S G +L G V + D Sbjct: 8 GVVQWFNDSKGFGFIKPD---VEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64 Query: 65 YSAENLKLVPKSSN 78 + E + L S N Sbjct: 65 KAIEVVALDGSSGN 78 >gi|50955362|ref|YP_062650.1| cold-shock protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951844|gb|AAT89545.1| cold-shock protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 72 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 7/56 (12%) Query: 7 IKWYNPDKGYGFITPEGSTESGD-------DVFLHRSAVASAGLFNLTEGQLVTYD 55 +KW+N +KGYGFIT + + + G+ DVF+H SA+ G L EGQ V ++ Sbjct: 1 MKWFNAEKGYGFITVDSNVDGGEQNVTVHQDVFVHYSAIDMNGYKVLEEGQQVEFE 56 >gi|41406908|ref|NP_959744.1| CspB [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395258|gb|AAS03127.1| CspB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 138 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ DKG+GF+ S E G+DV++ RS+ AG+ L GQ V + A Sbjct: 4 VPTGKVKWYDADKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGI----A 54 Query: 62 NGKYSAENLKL 72 +G+ + L L Sbjct: 55 SGRRGPQALSL 65 >gi|152967523|ref|YP_001363307.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] gi|151362040|gb|ABS05043.1| putative cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] Length = 152 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 5/57 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 V G +KW++ DKG+GF+ + E G +VF+H SA+ AG L++G V + VQ Sbjct: 24 VPTGKVKWFDADKGFGFL----AAEDGAEVFVHASAL-PAGTTTLSKGSRVEFGVVQ 75 >gi|51597876|ref|YP_072067.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP 32953] gi|51597877|ref|YP_072068.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP 32953] gi|153949918|ref|YP_001399369.1| cold shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|170022694|ref|YP_001719199.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|186897072|ref|YP_001874184.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|186897073|ref|YP_001874185.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|51591158|emb|CAH22823.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP 32953] gi|51591159|emb|CAH22824.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP 32953] gi|152961413|gb|ABS48874.1| cold shock DNA-binding domain protein [Yersinia pseudotuberculosis IP 31758] gi|169749228|gb|ACA66746.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186700098|gb|ACC90727.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|186700099|gb|ACC90728.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] Length = 70 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFI+P + DVF+H SA+ S L EGQ V + ++N A G Sbjct: 7 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGP 62 Query: 65 YSAENLKL 72 + + L Sbjct: 63 SAVNVIAL 70 >gi|325283100|ref|YP_004255641.1| cold-shock DNA-binding domain-containing protein [Deinococcus proteolyticus MRP] gi|324314909|gb|ADY26024.1| cold-shock DNA-binding domain protein [Deinococcus proteolyticus MRP] Length = 80 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++ +KGYGFI G+ DVF+H SA+ S G L EG V ++ + Sbjct: 3 QGRVKWFSVEKGYGFIEHPGNP----DVFVHYSAIQSGGFRKLNEGDEVEFEVGDGQGDR 58 Query: 64 KYSAENL 70 A+N+ Sbjct: 59 GPQAKNV 65 >gi|317405219|gb|EFV85558.1| cold shock-like protein cspA [Achromobacter xylosoxidans C54] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +K +N +KGYGFITPE G D+F H S + +G +L E Q V++ Sbjct: 1 METGVVKGFNSEKGYGFITPEA---GGKDLFAHFSEIQGSGFKSLEENQRVSF 50 >gi|323698523|ref|ZP_08110435.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. ND132] gi|323458455|gb|EGB14320.1| cold-shock DNA-binding domain protein [Desulfovibrio desulfuricans ND132] Length = 76 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M H G + W+N KG+GFIT + G DVF+H + + G L G+ VT+ + Sbjct: 1 MRHTGEVTWFNEQKGFGFITG----DDGRDVFVHYTEIVRDGFQTLEPGEKVTFTLADEE 56 Query: 61 ANGK 64 K Sbjct: 57 TGPK 60 >gi|167626580|ref|YP_001677080.1| cold-shock DNA-binding domain-containing protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667137|ref|ZP_04754715.1| cold-shock DNA-binding domain-containing protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875691|ref|ZP_05248401.1| cold shock protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167596581|gb|ABZ86579.1| putative cold-shock DNA-binding domain protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254841712|gb|EET20126.1| cold shock protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 6/52 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++K++N KG+GFITPE G DVF+H S + L EGQ VT++ Sbjct: 6 QGTVKFFNDQKGFGFITPE---NGGKDVFVHISKLNGE---TLAEGQQVTFE 51 >gi|288962305|ref|YP_003452600.1| cold shock protein [Azospirillum sp. B510] gi|288914571|dbj|BAI76056.1| cold shock protein [Azospirillum sp. B510] Length = 203 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 R ++KW+N KG+GF+TP+ + D FLH + + G +L EG +T D Sbjct: 21 RATVKWFNATKGFGFVTPD---DGSPDAFLHSTVLQFCGHDSLPEGATITCD 69 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI P + G D+F+H A+ +G+ L +G V Q Sbjct: 140 GTVKWFNVSKGFGFIAP---STGGKDIFVHIRALERSGISGLDDGAQVRVTIRQ 190 >gi|257791070|ref|YP_003181676.1| cold-shock DNA-binding domain-containing protein [Eggerthella lenta DSM 2243] gi|317488206|ref|ZP_07946777.1| cold-shock' DNA-binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325830873|ref|ZP_08164257.1| cold shock protein CspD [Eggerthella sp. HGA1] gi|257474967|gb|ACV55287.1| cold-shock DNA-binding domain protein [Eggerthella lenta DSM 2243] gi|316912711|gb|EFV34249.1| cold-shock' DNA-binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325487280|gb|EGC89723.1| cold shock protein CspD [Eggerthella sp. HGA1] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW++ +KGYGFI S E+G+D+F+H S + G +L E V + + + + Sbjct: 1 MSQGTVKWFSSEKGYGFI----SQENGEDLFVHFSEIQGDGYKSLDENAKVEF-VIASGS 55 Query: 62 NGKYSAENLKLV 73 NGK A + ++ Sbjct: 56 NGKSQATQVCVL 67 >gi|182624210|ref|ZP_02951996.1| cold shock protein [Clostridium perfringens D str. JGS1721] gi|177910624|gb|EDT72992.1| cold shock protein [Clostridium perfringens D str. JGS1721] Length = 69 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 5/52 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYD 55 G +KW+N +K YGFI S + GDDVF+H S V G +L EG+ V++D Sbjct: 6 GIVKWFNQEKCYGFI----SCDEGDDVFVHISQVKEKGPEKDLHEGESVSFD 53 >gi|123444001|ref|YP_001007971.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|123444002|ref|YP_001007972.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090962|emb|CAL13844.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090963|emb|CAL13845.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 70 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + +++ A G Sbjct: 7 GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IESGAKG 61 >gi|159039857|ref|YP_001539110.1| cold-shock DNA-binding domain-containing protein [Salinispora arenicola CNS-205] gi|157918692|gb|ABW00120.1| cold-shock DNA-binding domain protein [Salinispora arenicola CNS-205] Length = 128 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ KGYGF+T ++ G DVFL ++A+ AG+ +L GQ V + V + + Sbjct: 4 GRVKWYDATKGYGFVT----SDEGGDVFLPKAAL-PAGVTDLKGGQRVDFSVVDSRRGAQ 58 Query: 65 YSAENLKLVPKS 76 L P S Sbjct: 59 AMGVKLLEAPPS 70 >gi|269121609|ref|YP_003309786.1| cold-shock DNA-binding domain protein [Sebaldella termitidis ATCC 33386] gi|268615487|gb|ACZ09855.1| cold-shock DNA-binding domain protein [Sebaldella termitidis ATCC 33386] Length = 65 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G +KW+N KG+GFI S E G+D FLH S + G ++ EG+ V ++ Sbjct: 2 QGKVKWFNDKKGFGFI----SGEDGNDYFLHFSKIEKDGFKSVNEGEEVIFE 49 >gi|254421024|ref|ZP_05034748.1| 'Cold-shock' DNA-binding domain protein [Brevundimonas sp. BAL3] gi|196187201|gb|EDX82177.1| 'Cold-shock' DNA-binding domain protein [Brevundimonas sp. BAL3] Length = 174 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G +KW++P KGYGFI P+ T + DV LH S++ G EG + D V+ Sbjct: 11 GRVKWFDPAKGYGFIVPDDPTLTELRDVLLHISSLRDTGRETADEGAPIVCDCVRR 66 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 +KW+N KGYGF+ + E G D+F+H + GL +L G V + Sbjct: 112 VKWFNRTKGYGFVVRD--REPG-DIFVHIETLRRCGLDDLVPGDTVQVRF 158 >gi|293603888|ref|ZP_06686303.1| cold shock protein CspA [Achromobacter piechaudii ATCC 43553] gi|311104610|ref|YP_003977463.1| cold-shock DNA-binding domain-containing protein 1 [Achromobacter xylosoxidans A8] gi|292817725|gb|EFF76791.1| cold shock protein CspA [Achromobacter piechaudii ATCC 43553] gi|310759299|gb|ADP14748.1| cold-shock DNA-binding domain protein 1 [Achromobacter xylosoxidans A8] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI PE G D+F H S + S G L E Q V+Y Q A G Sbjct: 4 GIVKWFNDAKGFGFIMPE---NGGKDLFAHFSEIVSDGHKVLVENQRVSYVTAQG-AKGP 59 Query: 65 YSAE 68 ++ + Sbjct: 60 HATQ 63 >gi|238897472|ref|YP_002923149.1| RNA chaperone, transcription antiterminator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465227|gb|ACQ67001.1| RNA chaperone, transcription antiterminator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 69 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + +G +KW++ GYGFI+PE + G D+++H++A+A+ +L GQ V + Y Sbjct: 3 LKKGKVKWFDKIAGYGFISPE---DGGLDIYVHKAAIANIKDKSLIAGQDVEFSY 54 >gi|328545337|ref|YP_004305446.1| Cold-shock DNA-binding domain protein [polymorphum gilvum SL003B-26A1] gi|326415079|gb|ADZ72142.1| Cold-shock DNA-binding domain protein [Polymorphum gilvum SL003B-26A1] Length = 66 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ +G G I P GDDV + ++ +G+ +L EGQLV +D G+ Sbjct: 4 GNVKWFDSRRGIGAIEPH----EGDDVIVELDSLRRSGIESLKEGQLVAFDMAWR--AGR 57 Query: 65 YSAENLKLV 73 AE++K++ Sbjct: 58 SLAEDVKVL 66 >gi|254473739|ref|ZP_05087134.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio sp. JE062] gi|211957125|gb|EEA92330.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio sp. JE062] Length = 70 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 6/65 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G++K++N DKGYGFITP +GS D+F+H +A +G+ EG +T+ + Sbjct: 1 MRQDGTLKFFNHDKGYGFITPGDGSK----DIFVHITAFERSGIAVPAEGAAITF-VAEE 55 Query: 60 DANGK 64 D G+ Sbjct: 56 DRRGR 60 >gi|167837494|ref|ZP_02464377.1| cold-shock domain family protein [Burkholderia thailandensis MSMB43] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + G L E Q V+++ V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIKMEGFKTLKENQRVSFE-VKTGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|295689096|ref|YP_003592789.1| cold-shock DNA-binding domain-containing protein [Caulobacter segnis ATCC 21756] gi|295430999|gb|ADG10171.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC 21756] Length = 197 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G +KW++ KGYGFI P+ ++G DV LH +++ + G EG ++ D V+ Sbjct: 20 GRVKWFDAGKGYGFIIPDDPGQTGLKDVLLHVTSLRNCGRETAMEGAVIVCDVVRR 75 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 R +KW+N KGYGF+ + E G D+F+H + GL +L G V + + Sbjct: 130 ERAKVKWFNRTKGYGFVVRD--AEPG-DIFVHIETLRRGGLEDLQPGDDVLVRFAR 182 >gi|78065585|ref|YP_368354.1| cold-shock DNA-binding protein family protein [Burkholderia sp. 383] gi|77966330|gb|ABB07710.1| cold-shock DNA-binding protein family [Burkholderia sp. 383] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + G L E Q V++D V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIKMDGFKTLKENQRVSFD-VKVGPKGK 59 Query: 65 YSAENLKLV 73 +A N++ V Sbjct: 60 QAA-NIQAV 67 >gi|254461278|ref|ZP_05074694.1| cold shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2083] gi|206677867|gb|EDZ42354.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 173 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW++P KG+GF+ E E G D+ LH + + + G ++ EG ++ + D G Sbjct: 11 RGAVKWFDPAKGFGFVVAE---EGGADILLHANVLRNFGQNSVAEGAVIEILSQETD-RG 66 Query: 64 KYSAENLKLVP 74 + E L + P Sbjct: 67 LQAVEVLSIDP 77 >gi|158522029|ref|YP_001529899.1| cold-shock DNA-binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158510855|gb|ABW67822.1| cold-shock DNA-binding domain protein [Desulfococcus oleovorans Hxd3] Length = 66 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KG+GFI + +DVF+H SA+ G L+EG V+++ D Sbjct: 4 GIVKWFNEKKGFGFI----EVDESNDVFVHYSAITMPGFKTLSEGDRVSFEIEDTD 55 >gi|313901260|ref|ZP_07834747.1| cold shock protein CspB [Clostridium sp. HGF2] gi|312953868|gb|EFR35549.1| cold shock protein CspB [Clostridium sp. HGF2] Length = 65 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +K +N +KGYGFIT E G DVF H S + G + V +D V+ D Sbjct: 2 RGKVKMFNQEKGYGFIT----LEDGKDVFFHYSQLMMEGFKTIDADAEVEFDLVETD 54 >gi|296169637|ref|ZP_06851255.1| cold-shock domain family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895634|gb|EFG75330.1| cold-shock domain family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 137 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ DKG+GF+ S E G+DV++ RS+ AG+ L GQ V + A+G+ Sbjct: 4 GKVKWYDADKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGI----ASGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|89093876|ref|ZP_01166821.1| cold-shock domain family protein [Oceanospirillum sp. MED92] gi|89081762|gb|EAR60989.1| cold-shock domain family protein [Oceanospirillum sp. MED92] Length = 149 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW+N KG+GFIT DDVF+H + G +L EGQ V + YV+ Sbjct: 83 EQGTVKWFNVSKGFGFITR----GEDDDVFVHFRNIRGRGHRSLAEGQKVRF-YVRESDK 137 Query: 63 GKYSAENLKLV 73 G AE++ +V Sbjct: 138 G-LQAEDVSVV 147 >gi|260577276|ref|ZP_05845250.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] gi|259020520|gb|EEW23842.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] Length = 177 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GFI + E G D+ LH + + + G ++ +G ++ + VQ G+ Sbjct: 13 GHVKWFDPTKGFGFIV---ADEGGPDILLHANVLRNYGQSSVADGTAISVN-VQATQRGR 68 Query: 65 YSAENLKLVP 74 + E L++ P Sbjct: 69 QAVEVLEIEP 78 >gi|238764623|ref|ZP_04625569.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638] gi|238697213|gb|EEP89984.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638] Length = 57 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + Sbjct: 7 GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEF 53 >gi|227549696|ref|ZP_03979745.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078192|gb|EEI16155.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N +KG+GFI P+ + DVF+H S + G L E Q V ++ Sbjct: 4 GTVKWFNAEKGFGFIAPDDGSA---DVFVHYSEIQGNGFRTLEENQQVEFE 51 >gi|209965446|ref|YP_002298361.1| Cold shock-like protein CspG [Rhodospirillum centenum SW] gi|209958912|gb|ACI99548.1| Cold shock-like protein CspG [Rhodospirillum centenum SW] Length = 101 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 3/48 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G++K+++ DKG+GF+TP+G G DVF+H +A+ +G+ L Q V Sbjct: 38 GTVKFFSSDKGFGFVTPDG---GGKDVFVHVTALERSGVRTLMPEQRV 82 >gi|167586483|ref|ZP_02378871.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + G L E Q V++D V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIKMDGFKTLKENQRVSFD-VKVGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|118466199|ref|YP_880259.1| cold shock DNA-binding domain-containing protein [Mycobacterium avium 104] gi|254773885|ref|ZP_05215401.1| CspB [Mycobacterium avium subsp. avium ATCC 25291] gi|118167486|gb|ABK68383.1| 'Cold-shock' DNA-binding domain [Mycobacterium avium 104] Length = 135 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ DKG+GF+ S E G+DV++ RS+ AG+ L GQ V + A+G+ Sbjct: 4 GKVKWYDADKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGI----ASGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|296276802|ref|ZP_06859309.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus MR1] Length = 55 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 5/60 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 +KG+GFI E G DVF+H SA+A G +L EGQ V +D V+ D G+ +A +K+ Sbjct: 1 EKGFGFI----EREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGD-RGEQAANVVKM 55 >gi|56697005|ref|YP_167367.1| cold shock DNA-binding domain-containing protein [Ruegeria pomeroyi DSS-3] gi|56678742|gb|AAV95408.1| cold shock DNA-binding domain protein [Ruegeria pomeroyi DSS-3] Length = 175 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++P KGYGF+ E E G D+ LH + + + G ++ +G + + D G Sbjct: 12 RGRVKWFDPTKGYGFVVAE---EGGPDILLHVNVLRNFGQSSVADGAAIEIMTHRTD-RG 67 Query: 64 KYSAENLKLVP 74 + E + +VP Sbjct: 68 VQAVEVVSIVP 78 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF GS+E DVFLH + +GL +L G+ + + + G+ + Sbjct: 108 VKWFDKGKGFGFANVFGSSE---DVFLHIEVLRQSGLSDLQPGEALAMRVI-DGKRGRMA 163 Query: 67 AENL 70 AE L Sbjct: 164 AEVL 167 >gi|107022084|ref|YP_620411.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia AU 1054] gi|116689028|ref|YP_834651.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia HI2424] gi|170732317|ref|YP_001764264.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|206561351|ref|YP_002232116.1| cold shock-like protein [Burkholderia cenocepacia J2315] gi|254246036|ref|ZP_04939357.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184] gi|105892273|gb|ABF75438.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia AU 1054] gi|116647117|gb|ABK07758.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia HI2424] gi|124870812|gb|EAY62528.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184] gi|169815559|gb|ACA90142.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia MC0-3] gi|198037393|emb|CAR53328.1| cold shock-like protein [Burkholderia cenocepacia J2315] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + G L E Q V++D V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGPKGK 59 Query: 65 YSAENLKLV 73 +A N++ V Sbjct: 60 QAA-NIQAV 67 >gi|226308783|ref|YP_002768743.1| cold shock protein [Rhodococcus erythropolis PR4] gi|229488570|ref|ZP_04382436.1| putative cold-shock DNA-binding domain protein [Rhodococcus erythropolis SK121] gi|226187900|dbj|BAH36004.1| probable cold shock protein [Rhodococcus erythropolis PR4] gi|229324074|gb|EEN89829.1| putative cold-shock DNA-binding domain protein [Rhodococcus erythropolis SK121] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N +KG+GFI P+ T DVF+H S ++ G +L E Q V ++ Q Sbjct: 3 QGIVKWFNGEKGFGFIAPDDGTP---DVFVHYSEISGNGYKSLDENQRVEFEVGQ 54 >gi|159476838|ref|XP_001696518.1| nucleic acid binding protein [Chlamydomonas reinhardtii] gi|30527347|gb|AAN77901.2| putative nucleic acid binding protein [Chlamydomonas reinhardtii] gi|158282743|gb|EDP08495.1| nucleic acid binding protein [Chlamydomonas reinhardtii] Length = 247 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 3/44 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46 +G++KW+N KG+GFITP G G+D+F+H++ + S G +L Sbjct: 7 QQGTVKWFNATKGFGFITPGG---GGEDLFVHQTNINSEGFRSL 47 >gi|301066334|ref|YP_003788357.1| cold shock protein [Lactobacillus casei str. Zhang] gi|300438741|gb|ADK18507.1| Cold shock protein [Lactobacillus casei str. Zhang] Length = 73 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +K +N DKGYGFI EG D+F+H SA+ +G +LT G+ V + V+ Sbjct: 2 QGRVKNFNVDKGYGFIEAEGQP----DIFVHFSAINESGFKSLTPGETVDFVIVE 52 >gi|53720168|ref|YP_109154.1| cold shock-like protein [Burkholderia pseudomallei K96243] gi|76811439|ref|YP_334418.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|83720914|ref|YP_442133.1| cold-shock domain-contain protein [Burkholderia thailandensis E264] gi|126441090|ref|YP_001059958.1| cold-shock domain-contain protein [Burkholderia pseudomallei 668] gi|126452235|ref|YP_001067250.1| cold-shock domain-contain protein [Burkholderia pseudomallei 1106a] gi|167581004|ref|ZP_02373878.1| cold-shock domain family protein [Burkholderia thailandensis TXDOH] gi|167619082|ref|ZP_02387713.1| cold-shock domain family protein [Burkholderia thailandensis Bt4] gi|167720733|ref|ZP_02403969.1| cold-shock domain family protein [Burkholderia pseudomallei DM98] gi|167739716|ref|ZP_02412490.1| cold-shock domain family protein [Burkholderia pseudomallei 14] gi|167816920|ref|ZP_02448600.1| cold-shock domain family protein [Burkholderia pseudomallei 91] gi|167825323|ref|ZP_02456794.1| cold-shock domain family protein [Burkholderia pseudomallei 9] gi|167846825|ref|ZP_02472333.1| cold-shock domain family protein [Burkholderia pseudomallei B7210] gi|167895416|ref|ZP_02482818.1| cold-shock domain family protein [Burkholderia pseudomallei 7894] gi|167903800|ref|ZP_02491005.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC 13177] gi|167912067|ref|ZP_02499158.1| cold-shock domain family protein [Burkholderia pseudomallei 112] gi|167920041|ref|ZP_02507132.1| cold-shock domain family protein [Burkholderia pseudomallei BCC215] gi|217421179|ref|ZP_03452684.1| cold shock family protein [Burkholderia pseudomallei 576] gi|226193900|ref|ZP_03789502.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9] gi|226197837|ref|ZP_03793411.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9] gi|237813374|ref|YP_002897825.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|242316730|ref|ZP_04815746.1| cold shock family protein [Burkholderia pseudomallei 1106b] gi|254181035|ref|ZP_04887633.1| cold-shock domain family protein [Burkholderia pseudomallei 1655] gi|52210582|emb|CAH36565.1| cold shock-like protein [Burkholderia pseudomallei K96243] gi|76580892|gb|ABA50367.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|83654739|gb|ABC38802.1| cold-shock domain family protein-related protein [Burkholderia thailandensis E264] gi|126220583|gb|ABN84089.1| cold shock family protein [Burkholderia pseudomallei 668] gi|126225877|gb|ABN89417.1| cold shock family protein [Burkholderia pseudomallei 1106a] gi|184211574|gb|EDU08617.1| cold-shock domain family protein [Burkholderia pseudomallei 1655] gi|217396591|gb|EEC36608.1| cold shock family protein [Burkholderia pseudomallei 576] gi|225930025|gb|EEH26038.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9] gi|225934205|gb|EEH30190.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9] gi|237503488|gb|ACQ95806.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|242139969|gb|EES26371.1| cold shock family protein [Burkholderia pseudomallei 1106b] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + G L E Q V+++ V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMEGFKTLKENQRVSFE-VKTGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|313681671|ref|YP_004059409.1| cold-shock DNA-binding protein family [Sulfuricurvum kujiense DSM 16994] gi|313154531|gb|ADR33209.1| cold-shock DNA-binding protein family [Sulfuricurvum kujiense DSM 16994] Length = 72 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTEGQLVTYDYVQN 59 V G++KW+N +KG+GFI + G DVF+H + S G +L EGQ VTY Q Sbjct: 4 VLNGTVKWFNSEKGFGFIQQD---NGGKDVFVHFRQINSTGYGRVSLDEGQKVTYTVGQG 60 Query: 60 D 60 + Sbjct: 61 E 61 >gi|229552085|ref|ZP_04440810.1| cold shock protein CspA [Lactobacillus rhamnosus LMS2-1] gi|229314518|gb|EEN80491.1| cold shock protein CspA [Lactobacillus rhamnosus LMS2-1] gi|328462896|gb|EGF34740.1| cold shock protein [Lactobacillus rhamnosus MTCC 5462] Length = 75 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +K +N DKGYGFI EG D+F+H SA+ +G +LT G+ V + V+ Sbjct: 3 QGRVKNFNVDKGYGFIEAEGQP----DIFVHFSAINESGFKSLTPGEQVDFVIVE 53 >gi|90419542|ref|ZP_01227452.1| cold shock family protein [Aurantimonas manganoxydans SI85-9A1] gi|90336479|gb|EAS50220.1| cold shock family protein [Aurantimonas manganoxydans SI85-9A1] Length = 192 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KGYGF+T + E +D+F+H + G+ L GQ V + Q D G+ + Sbjct: 122 VKWFNRTKGYGFLT---TGEGTEDIFIHMETLRRFGMTELRPGQDVLVRFGQGD-KGRMA 177 Query: 67 AE 68 AE Sbjct: 178 AE 179 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KG+GFI P+ + G D+ LH + + G EG V + Q + Sbjct: 28 GHIKWFDVSKGFGFIVPD---DGGADILLHVTCLRRDGHATALEGARVVCEVQQGE 80 >gi|20135600|gb|AAM09094.1| cold-shock protein CspD [Burkholderia multivorans] Length = 68 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + G L E Q V++D V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|309777855|ref|ZP_07672801.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914416|gb|EFP60210.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 65 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG +K +N +KGYGFIT E G DVF H S + G + V +D V+ D Sbjct: 2 RGKVKMFNQEKGYGFIT----LEDGKDVFFHYSQLMMEGFKTIDADAEVEFDVVETD 54 >gi|238758372|ref|ZP_04619550.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236] gi|238703495|gb|EEP96034.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236] Length = 66 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + +++ A G Sbjct: 3 GLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-IESGAKGP 58 Query: 65 YSAENLKL 72 + + L Sbjct: 59 SAVNVVAL 66 >gi|242247545|ref|NP_001156314.1| RNA-binding protein lin-28-like [Acyrthosiphon pisum] gi|239792625|dbj|BAH72634.1| ACYPI009849 [Acyrthosiphon pisum] Length = 250 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 V +G KW+N KG+GF+TP+ + G DVF+H+ + G +L E + V + ++D Sbjct: 70 VRQGICKWFNSKKGFGFVTPD---DGGKDVFVHQRVIKKDGFRSLRENEHVEFTCHESD 125 >gi|301059113|ref|ZP_07200063.1| cold shock protein CspB [delta proteobacterium NaphS2] gi|300446786|gb|EFK10601.1| cold shock protein CspB [delta proteobacterium NaphS2] Length = 66 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW++ KGYGFI E G DVF+H S + G L EG V+++ Sbjct: 3 EGTVKWFDEKKGYGFI----EQEDGPDVFVHFSGINGTGFKTLNEGARVSFE 50 >gi|183984628|ref|YP_001852919.1| cold shock-like protein B CspB [Mycobacterium marinum M] gi|183177954|gb|ACC43064.1| cold shock-like protein B CspB [Mycobacterium marinum M] Length = 134 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ DKG+GF+ S E G+DV++ RS+ AG+ L GQ V + A+G+ Sbjct: 4 GKVKWYDSDKGFGFL----SQEEGEDVYV-RSSALPAGVEGLKAGQRVEFGI----ASGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|254252966|ref|ZP_04946284.1| Cold-shock protein [Burkholderia dolosa AUO158] gi|124895575|gb|EAY69455.1| Cold-shock protein [Burkholderia dolosa AUO158] gi|325524697|gb|EGD02687.1| cold shock-like protein [Burkholderia sp. TJI49] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + G L E Q V++D V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|161525563|ref|YP_001580575.1| cold-shock DNA-binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189349709|ref|YP_001945337.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|221201211|ref|ZP_03574251.1| conserved domain protein [Burkholderia multivorans CGD2M] gi|221206335|ref|ZP_03579348.1| conserved domain protein [Burkholderia multivorans CGD2] gi|221213617|ref|ZP_03586591.1| conserved domain protein [Burkholderia multivorans CGD1] gi|160342992|gb|ABX16078.1| cold-shock DNA-binding domain protein [Burkholderia multivorans ATCC 17616] gi|189333731|dbj|BAG42801.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|221166406|gb|EED98878.1| conserved domain protein [Burkholderia multivorans CGD1] gi|221173644|gb|EEE06078.1| conserved domain protein [Burkholderia multivorans CGD2] gi|221179061|gb|EEE11468.1| conserved domain protein [Burkholderia multivorans CGD2M] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + G L E Q V++D V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|52843021|ref|YP_096820.1| cold shock protein CspE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295652|ref|YP_128067.1| hypothetical protein lpl2740 [Legionella pneumophila str. Lens] gi|54298813|ref|YP_125182.1| hypothetical protein lpp2878 [Legionella pneumophila str. Paris] gi|148361138|ref|YP_001252345.1| cold shock protein CspE [Legionella pneumophila str. Corby] gi|296108468|ref|YP_003620169.1| hypothetical protein lpa_04102 [Legionella pneumophila 2300/99 Alcoy] gi|52630132|gb|AAU28873.1| cold shock protein CspE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752598|emb|CAH14031.1| hypothetical protein lpp2878 [Legionella pneumophila str. Paris] gi|53755484|emb|CAH16983.1| hypothetical protein lpl2740 [Legionella pneumophila str. Lens] gi|148282911|gb|ABQ56999.1| cold shock protein CspE [Legionella pneumophila str. Corby] gi|295650370|gb|ADG26217.1| hypothetical protein lpa_04102 [Legionella pneumophila 2300/99 Alcoy] gi|307611696|emb|CBX01390.1| hypothetical protein LPW_30821 [Legionella pneumophila 130b] Length = 68 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG++KW+N KG+GF+ G D F+H SA+ +G L EG V + Sbjct: 6 RGTVKWFNESKGFGFLES-----GGKDYFVHFSAIQGSGFKTLAEGATVMF 51 >gi|311107231|ref|YP_003980084.1| cold shock protein CapA [Achromobacter xylosoxidans A8] gi|310761920|gb|ADP17369.1| cold shock protein CapA [Achromobacter xylosoxidans A8] Length = 69 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW+N DKG+GFI PE G D+F H S + G +L E Q V++ Sbjct: 3 IETGIVKWFNNDKGFGFIMPE---LGGKDLFAHFSEIQGDGHKSLEENQRVSF 52 >gi|254823203|ref|ZP_05228204.1| CspB [Mycobacterium intracellulare ATCC 13950] Length = 135 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ DKG+GF+ S E G+DV++ RS+ AG+ L GQ V + A+G+ Sbjct: 4 GKVKWYDADKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGI----ASGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|213648751|ref|ZP_03378804.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 39 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 3/36 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40 G +KW+NP+KG+GFITP+ + DVF+H SA+ S Sbjct: 7 GLVKWFNPEKGFGFITPK---DGSKDVFVHFSAIQS 39 >gi|199598150|ref|ZP_03211572.1| Cold shock protein [Lactobacillus rhamnosus HN001] gi|258508287|ref|YP_003171038.1| cold shock protein [Lactobacillus rhamnosus GG] gi|258539501|ref|YP_003174000.1| Cold shock protein [Lactobacillus rhamnosus Lc 705] gi|199590911|gb|EDY98995.1| Cold shock protein [Lactobacillus rhamnosus HN001] gi|257148214|emb|CAR87187.1| Cold shock protein [Lactobacillus rhamnosus GG] gi|257151177|emb|CAR90149.1| Cold shock protein [Lactobacillus rhamnosus Lc 705] gi|259649604|dbj|BAI41766.1| cold shock protein [Lactobacillus rhamnosus GG] Length = 74 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +K +N DKGYGFI EG D+F+H SA+ +G +LT G+ V + V+ Sbjct: 2 QGRVKNFNVDKGYGFIEAEGQP----DIFVHFSAINESGFKSLTPGEQVDFVIVE 52 >gi|87121680|ref|ZP_01077567.1| Cold-shock protein, DNA-binding [Marinomonas sp. MED121] gi|86162931|gb|EAQ64209.1| Cold-shock protein, DNA-binding [Marinomonas sp. MED121] Length = 79 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++KW+N KG GFI + DVF+H ++ S G L +GQ V++ +ND Sbjct: 6 KGTVKWFNDSKGVGFIQRDNEA----DVFVHYKSIVSEGHKTLKKGQAVSFFITEND 58 >gi|171057778|ref|YP_001790127.1| cold-shock DNA-binding domain-containing protein [Leptothrix cholodnii SP-6] gi|170775223|gb|ACB33362.1| cold-shock DNA-binding domain protein [Leptothrix cholodnii SP-6] Length = 72 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58 G +KW++ KG+GFITPE + G D+F H S + + G F +L E Q V ++ Q Sbjct: 8 GIVKWFDDGKGFGFITPE---DGGKDLFAHHSEIRNGGGFRSLQENQRVEFETKQ 59 >gi|15828153|ref|NP_302416.1| cold shock protein [Mycobacterium leprae TN] gi|221230630|ref|YP_002504046.1| putative cold shock protein [Mycobacterium leprae Br4923] gi|2440094|emb|CAB16651.1| small cold-shock protein [Mycobacterium leprae] gi|13093707|emb|CAC31102.1| probable cold shock protein [Mycobacterium leprae] gi|219933737|emb|CAR72244.1| probable cold shock protein [Mycobacterium leprae Br4923] Length = 136 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ DKG+GF+ S E G+DV++ RS+ AG+ L GQ V + A+G+ Sbjct: 4 GKVKWYDADKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGV----ASGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|225575513|ref|ZP_03784123.1| hypothetical protein RUMHYD_03605 [Blautia hydrogenotrophica DSM 10507] gi|225037263|gb|EEG47509.1| hypothetical protein RUMHYD_03605 [Blautia hydrogenotrophica DSM 10507] Length = 77 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V G++KW++P KGYGFI + ++G + F+H+S + G +L G+ V+Y Sbjct: 12 VEHGTVKWFDPVKGYGFI----AGDNGKETFVHQSDILMRGFRHLETGERVSY 60 >gi|146299007|ref|YP_001193598.1| cold-shock DNA-binding domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153425|gb|ABQ04279.1| cold-shock DNA-binding protein family [Flavobacterium johnsoniae UW101] Length = 64 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 7/63 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KGYGFIT E E+G D+F+H S + + L EG V+Y+ + GK Sbjct: 4 GTVKFFNESKGYGFITDE---ETGKDIFVHASGINAE---ELREGDRVSYEE-EEGRKGK 56 Query: 65 YSA 67 +A Sbjct: 57 VAA 59 >gi|172055299|ref|YP_001806626.1| putative cold shock protein, DNA-binding [Cyanothece sp. ATCC 51142] gi|171701580|gb|ACB54560.1| putative cold shock protein, DNA-binding [Cyanothece sp. ATCC 51142] Length = 64 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 6/52 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G +KW++ KGYGFI + + G+D+F+H S V S +L EGQ V Y+ Sbjct: 3 QGQVKWFDTQKGYGFIAQQ---DGGEDLFVHYSEVQSQ---SLEEGQTVEYE 48 >gi|225023129|ref|ZP_03712321.1| hypothetical protein CORMATOL_03178 [Corynebacterium matruchotii ATCC 33806] gi|305681903|ref|ZP_07404707.1| cold-shock DNA-binding domain protein [Corynebacterium matruchotii ATCC 14266] gi|224944352|gb|EEG25561.1| hypothetical protein CORMATOL_03178 [Corynebacterium matruchotii ATCC 33806] gi|305658376|gb|EFM47879.1| cold-shock DNA-binding domain protein [Corynebacterium matruchotii ATCC 14266] Length = 132 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 15/80 (18%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+PD+G+GFI S G+D ++ +S V G+ L GQ V +D+ A+G Sbjct: 4 GKVKWYDPDRGFGFI----SNPDGEDCYVGKS-VLPHGVTELHRGQRVDFDF----ASGA 54 Query: 65 YSAENLKL------VPKSSN 78 + L++ P+S N Sbjct: 55 RGPQALRVKILDEPRPRSRN 74 >gi|119357559|ref|YP_912203.1| cold-shock DNA-binding protein family protein [Chlorobium phaeobacteroides DSM 266] gi|119354908|gb|ABL65779.1| cold-shock DNA-binding protein family [Chlorobium phaeobacteroides DSM 266] Length = 85 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 4 RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 R +KW++ KGYGFI PEG G+D+F+H SA+ F + Q D+ Sbjct: 3 RSKVKWFDGKKGYGFIVNPEG----GEDIFVHFSAIICEQSFKVL-NQDADVDFELEKTQ 57 Query: 63 GKYSAENLKLVP 74 + A+N++ VP Sbjct: 58 KGFQAKNVREVP 69 >gi|121601754|ref|YP_989122.1| cold-shock DNA-binding family protein [Bartonella bacilliformis KC583] gi|120613931|gb|ABM44532.1| cold-shock DNA-binding family protein [Bartonella bacilliformis KC583] Length = 179 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N DKG+GF++ TE D+F+H + GL L GQ+V + + + Sbjct: 105 LERAIVKWFNRDKGFGFLSRGQGTE---DIFIHMETLRRFGLTELRAGQVVIVRFGKGE- 160 Query: 62 NGKYSAE 68 G +AE Sbjct: 161 KGLMTAE 167 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G IKW++ KGYGF+TP+ D+ LH S + G EG V Sbjct: 16 GIIKWFDSSKGYGFVTPDFPKLP--DILLHISVMQRDGFQTALEGAKVV 62 >gi|319948064|ref|ZP_08022237.1| CspB [Dietzia cinnamea P4] gi|319438269|gb|EFV93216.1| CspB [Dietzia cinnamea P4] Length = 133 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 9/69 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF++ EG G+DV++ R+ AG+ L Q V +D V +G+ Sbjct: 4 GKVKWYDAEKGFGFLSQEG----GEDVYV-RADALPAGVETLRPRQRVEFDMV----SGR 54 Query: 65 YSAENLKLV 73 + L++V Sbjct: 55 RGPQALRVV 63 >gi|270158155|ref|ZP_06186812.1| cold shock domain family protein [Legionella longbeachae D-4968] gi|289163584|ref|YP_003453722.1| stress protein, member of the CspA-family [Legionella longbeachae NSW150] gi|269990180|gb|EEZ96434.1| cold shock domain family protein [Legionella longbeachae D-4968] gi|288856757|emb|CBJ10568.1| stress protein, member of the CspA-family [Legionella longbeachae NSW150] Length = 69 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG++KW+N KG+GF+ G D F+H SA++ G L EG V + Sbjct: 6 RGTVKWFNESKGFGFL-----ESGGKDYFVHFSAISGTGFKTLAEGATVVF 51 >gi|254496062|ref|ZP_05108963.1| cold shock protein CspE [Legionella drancourtii LLAP12] gi|254354704|gb|EET13338.1| cold shock protein CspE [Legionella drancourtii LLAP12] Length = 68 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG++KW+N KG+GF+ G D F+H SA+ +G L EG V + Sbjct: 6 RGTVKWFNESKGFGFLES-----GGKDYFVHFSAIQGSGFKTLAEGATVMF 51 >gi|237653147|ref|YP_002889461.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] gi|237624394|gb|ACR01084.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] Length = 204 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 7/74 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQN 59 M H+G I + DKG+GFITP G G+ VF+H S++A+ EG +LV+Y+ + Sbjct: 1 MRHQGKITTWKDDKGFGFITPNG---GGEPVFVHVSSLANRQ--RRPEGTELVSYE-LAT 54 Query: 60 DANGKYSAENLKLV 73 DA G+ A+ + V Sbjct: 55 DAKGRLQAKAVAFV 68 >gi|330983247|gb|EGH81350.1| cold shock protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 36 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 27/34 (79%), Gaps = 4/34 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++KW+N +KG+GFITP +SGDD+F+H A+ Sbjct: 7 GTVKWFNDEKGFGFITP----QSGDDLFVHFKAI 36 >gi|310827425|ref|YP_003959782.1| cold shock protein CspA [Eubacterium limosum KIST612] gi|308739159|gb|ADO36819.1| cold shock protein CspA [Eubacterium limosum KIST612] Length = 66 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI EG E+G+D+F+ S++ +L +G V Y+ Q D + Sbjct: 4 GTVKWFNSNKGFGFI--EG--ENGEDIFVLFSSIVGGNCESLRDGDKVIYETEQGDR--Q 57 Query: 65 YSAENLKLV 73 A++++LV Sbjct: 58 LRAKSVQLV 66 >gi|167646972|ref|YP_001684635.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp. K31] gi|167349402|gb|ABZ72137.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31] Length = 201 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G +KW++ KGYGFI P+ ++G DV LH +++ + G EG ++ D V+ Sbjct: 20 GRVKWFDTGKGYGFIVPDDPGQTGLKDVLLHVTSLRNCGRETALEGAVIVCDVVKR 75 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 R +KW+N KGYGF+ +G D+F+H + GL +L G V + + Sbjct: 134 ERAKVKWFNRTKGYGFVVRDGQP---GDIFVHIETLRRGGLEDLQPGDDVMVRFAE 186 >gi|330465294|ref|YP_004403037.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] gi|328808265|gb|AEB42437.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] Length = 128 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 7/69 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ KGYGF+T ++ G DVFL ++A+ AG+ +L GQ + + V D+ Sbjct: 4 GRVKWYDATKGYGFVT----SDEGGDVFLPKAAL-PAGVTDLKGGQRIDFSVV--DSRRG 56 Query: 65 YSAENLKLV 73 A +KL+ Sbjct: 57 TQAMGVKLL 65 >gi|284007581|emb|CBA73141.1| cold shock protein [Arsenophonus nasoniae] Length = 80 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 + G +KW++ +GYGFI+P G D++++R A+A+ L EGQ V + +N Sbjct: 12 LQMGRVKWFDVKEGYGFISP---VNGGQDIYVNRRAIANTKNKWLKEGQCVEFSITRN 66 >gi|25027451|ref|NP_737505.1| putative cold shock protein [Corynebacterium efficiens YS-314] gi|23492733|dbj|BAC17705.1| putative cold shock protein [Corynebacterium efficiens YS-314] Length = 127 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KWY+P++G+GF+ S G+D F+ + V G+ L +GQ + +D+ A G+ Sbjct: 4 GTVKWYDPERGFGFV----SNPGGEDCFVGKQ-VLPKGVTELHQGQRIEFDF----AAGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 KGPQALRV 62 >gi|116494772|ref|YP_806506.1| cold shock protein [Lactobacillus casei ATCC 334] gi|191638285|ref|YP_001987451.1| Cold-shock protein [Lactobacillus casei BL23] gi|116104922|gb|ABJ70064.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC 334] gi|190712587|emb|CAQ66593.1| Cold-shock protein [Lactobacillus casei BL23] gi|327385511|gb|AEA56985.1| Cold shock domain protein [Lactobacillus casei BD-II] Length = 73 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +K +N DKGYGFI EG D+F+H SA+ G +LT G+ V + V+ Sbjct: 2 QGRVKNFNVDKGYGFIEAEGQP----DIFVHFSAINEPGFKSLTPGETVDFVIVE 52 >gi|238755702|ref|ZP_04617036.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473] gi|238706069|gb|EEP98452.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473] Length = 66 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GFI+P + DVF+H SA+ S+ L EGQ V + Q Sbjct: 3 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSSDFKTLDEGQNVEFSIEQ 53 >gi|167563689|ref|ZP_02356605.1| cold-shock domain family protein [Burkholderia oklahomensis EO147] gi|167570839|ref|ZP_02363713.1| cold-shock domain family protein [Burkholderia oklahomensis C6786] Length = 67 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + G L E Q V+++ V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIKMDGFKTLKENQRVSFE-VKTGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|254495787|ref|ZP_05108699.1| cold shock-like protein [Legionella drancourtii LLAP12] gi|254354944|gb|EET13567.1| cold shock-like protein [Legionella drancourtii LLAP12] Length = 72 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++K +N KGYGFITP+ + ES +VF+H S VA AG L E Q ++Y Sbjct: 6 GTVKRFNKIKGYGFITPD-TGES--EVFVHFSEVAVAGYKELKENQRISY 52 >gi|38233375|ref|NP_939142.1| cold shock protein B [Corynebacterium diphtheriae NCTC 13129] gi|38199635|emb|CAE49294.1| cold shock protein B [Corynebacterium diphtheriae] Length = 129 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 24/86 (27%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV------ 57 +G + WY+ DKG+GF+ S GDD F+ + V G+ L +GQ V +DYV Sbjct: 3 QGKVLWYDVDKGFGFV----SNPEGDDCFVSKD-VLPQGVQKLEKGQRVEFDYVARGRGP 57 Query: 58 -------------QNDANGKYSAENL 70 + A KYSAE L Sbjct: 58 QALRIKVLDTPRLRRPAQHKYSAEEL 83 >gi|257455421|ref|ZP_05620656.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] gi|257447383|gb|EEV22391.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] Length = 70 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +KW+N KG+GFI SG+D+F+H A+ G +L +GQ V + V+ Sbjct: 5 EQGIVKWFNDSKGFGFI----QRNSGEDIFVHFRAIQGDGYRSLQDGQKVEFIVVE 56 >gi|329298247|ref|ZP_08255583.1| cold shock-like protein CspD [Plautia stali symbiont] Length = 73 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI P G +D+F H S + G L GQ V +D Sbjct: 4 GTVKWFNNTKGFGFICPIGGD---NDIFAHYSTIQMEGYRTLKAGQHVQFD 51 >gi|324511297|gb|ADY44709.1| Y-box factor [Ascaris suum] Length = 294 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 7/59 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 +G++KW+N GYGFI ++G+D+F+H++AV L +L +G+ V +D V+ Sbjct: 39 QGTVKWFNVKNGYGFIN---RADTGEDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVE 94 >gi|242239550|ref|YP_002987731.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] gi|242131607|gb|ACS85909.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] Length = 70 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ KG+GFITP+ ++ DVF+H SA+ S L EGQ V + Sbjct: 7 GLVKWFDAGKGFGFITPDNGSK---DVFVHFSAIQSDDYKTLYEGQKVEF 53 >gi|328955745|ref|YP_004373078.1| cold-shock DNA-binding protein family [Coriobacterium glomerans PW2] gi|328456069|gb|AEB07263.1| cold-shock DNA-binding protein family [Coriobacterium glomerans PW2] Length = 76 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Query: 8 KWYNPDKGYGFITPEGSTESGD--DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 K + +KGYGFITP+ + E G DVF+H SA+ G +L EG V ++ + G+ Sbjct: 8 KSFFREKGYGFITPDDAPEDGSKSDVFVHFSALQMDGFKSLDEGDRVEFELGEGKKPGET 67 Query: 66 SAENLKLV 73 A N++ + Sbjct: 68 QAINVRKI 75 >gi|57339760|gb|AAW49867.1| hypothetical protein FTT0391 [synthetic construct] Length = 102 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 6/52 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++K++N KG+GFITPE G DVF+H S + L EGQ VT++ Sbjct: 32 QGTVKFFNEQKGFGFITPEN---GGKDVFVHISKLNGE---TLAEGQQVTFE 77 >gi|21222717|ref|NP_628496.1| cold shock protein B [Streptomyces coelicolor A3(2)] gi|256786208|ref|ZP_05524639.1| cold shock protein B [Streptomyces lividans TK24] gi|289770100|ref|ZP_06529478.1| cold shock protein B [Streptomyces lividans TK24] gi|8249978|emb|CAB93399.1| cold shock protein B [Streptomyces coelicolor A3(2)] gi|289700299|gb|EFD67728.1| cold shock protein B [Streptomyces lividans TK24] Length = 127 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ +L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVESLKPGQRVEFGVV 51 >gi|332288226|ref|YP_004419078.1| stationary phase/starvation inducible regulatory protein CspD [Gallibacterium anatis UMN179] gi|330431122|gb|AEC16181.1| stationary phase/starvation inducible regulatory protein CspD [Gallibacterium anatis UMN179] Length = 69 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI+ EG D+F H S + G +L GQ V ++ V D Sbjct: 4 GVVKWFNNAKGFGFISVEGHE---GDIFAHYSVIEMDGYRSLKAGQKVQFEAVHGDKG-- 58 Query: 65 YSAENLKLVP 74 + K+VP Sbjct: 59 --SHATKIVP 66 >gi|163868307|ref|YP_001609516.1| cold shock protein [Bartonella tribocorum CIP 105476] gi|161017963|emb|CAK01521.1| cold shock protein [Bartonella tribocorum CIP 105476] Length = 191 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N DKG+GF++ TE D+F+H + GL L GQ+V + + + Sbjct: 117 LERAIVKWFNRDKGFGFLSRGQGTE---DIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMTAE 179 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G IKW++ KGYGFI P+ D+ LH + + G EG V Sbjct: 28 GVIKWFDGSKGYGFIVPD--LPHFPDILLHVTVMRRDGFQTAMEGAKV 73 >gi|327482221|gb|AEA85531.1| cold-shock DNA-binding domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 235 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M RG++K +N DKG+GFI PE + G+++F+H SAV G G V + D Sbjct: 1 MERRGTLKSWNDDKGFGFIRPE---QGGEELFVHISAV--HGERRPLVGDRVLF-VAGRD 54 Query: 61 ANGKYSAENLKL 72 A G+ AE+++L Sbjct: 55 AQGRLRAEHVRL 66 >gi|298291596|ref|YP_003693535.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296928107|gb|ADH88916.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 199 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G+IKW++ KGYGF+ P+G G DV LH + + G EG + + V + Sbjct: 36 GTIKWFDVSKGYGFVVPDG---GGSDVLLHVTCLRRGGFNTAQEGARIVCEAVARE 88 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 R +KW+N +G+GF++ E +D+F+H + GL L GQ+V + Sbjct: 127 RAWVKWFNRLRGFGFLS---RGEGTEDIFVHMETLRRHGLTELRPGQMVLVRF 176 >gi|227535230|ref|ZP_03965279.1| cold shock protein CspA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631631|ref|ZP_04674662.1| cold-shock DNA-binding family protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|227187114|gb|EEI67181.1| cold shock protein CspA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526096|gb|EEQ65097.1| cold-shock DNA-binding family protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 73 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G +K +N DKGYGFI EG D+F+H SA+ G +LT G+ V + V+ Sbjct: 2 QGRVKNFNVDKGYGFIEAEGQP----DIFVHFSAINEPGFKSLTPGETVDFVIVE 52 >gi|145596458|ref|YP_001160755.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440] gi|145305795|gb|ABP56377.1| cold-shock DNA-binding protein family [Salinispora tropica CNB-440] Length = 128 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ KGYGF+T + G DVFL ++A+ AG+ +L GQ V + V + + Sbjct: 4 GRVKWYDATKGYGFVT----NDEGGDVFLPKAAL-PAGVTDLKGGQRVDFSVVDSRRGAQ 58 Query: 65 YSAENLKLVPKS 76 L P S Sbjct: 59 AMGVKLLEAPPS 70 >gi|117927315|ref|YP_871866.1| cold-shock DNA-binding protein family protein [Acidothermus cellulolyticus 11B] gi|117647778|gb|ABK51880.1| cold-shock DNA-binding protein family [Acidothermus cellulolyticus 11B] Length = 129 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 5/55 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G +KWY+P+KG+GF+T + G DVF+ SA+ AG+ +L G V + V++ Sbjct: 4 GKVKWYDPEKGFGFLT----RDDGGDVFVRASAL-PAGVTSLKPGSRVEFGIVES 53 >gi|10955166|ref|NP_059822.1| hypothetical protein pTi_150 [Agrobacterium tumefaciens] gi|8572732|gb|AAF77178.1| ysb [Agrobacterium tumefaciens] gi|11124691|emb|CAC15178.1| CspA-like protein [Agrobacterium tumefaciens] Length = 100 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ K +GFITP+ + G DVFLH S++ L G + Y Q GK Sbjct: 4 GKVKWFDATKRFGFITPD---DGGPDVFLHLSSITDPACPTLHPGFRLHYGVEQR--GGK 58 Query: 65 YSAENLKLVP 74 +A +++ P Sbjct: 59 VTASDVRPAP 68 >gi|295110047|emb|CBL24000.1| cold-shock DNA-binding protein family [Ruminococcus obeum A2-162] Length = 75 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW++ KGYGFIT E G D F H S + G L+ GQ V ++ DANG+ Sbjct: 8 TVKWFSAQKGYGFIT----GEDGIDYFAHFSEIQMDGYRKLSGGQPVLFE-AGTDANGRS 62 Query: 66 SAENL 70 A+N+ Sbjct: 63 LAKNI 67 >gi|222085261|ref|YP_002543791.1| cold shock protein [Agrobacterium radiobacter K84] gi|221722709|gb|ACM25865.1| cold shock protein [Agrobacterium radiobacter K84] Length = 68 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K ++ +KGYGFI P T+ +F+H V +GL L +GQ + ++ ++ D G+ Sbjct: 4 GIVKNFDLEKGYGFIQP---TDGSVAIFVHAKIVVKSGLETLKKGQKLIFE-IEQDGMGR 59 Query: 65 YSAENLKL 72 S L+L Sbjct: 60 SSISKLRL 67 >gi|311746405|ref|ZP_07720190.1| putative cold shock protein [Algoriphagus sp. PR1] gi|126575291|gb|EAZ79623.1| putative cold shock protein [Algoriphagus sp. PR1] Length = 64 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K++N KG+GFITP+ S E DVF+H+S + + ++ E V+Y+ VQ Sbjct: 1 MNEGTVKFFNTTKGFGFITPDDSDE---DVFVHQSGL----VHDIRENDKVSYELVQGKK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--VNAVNVKVI 63 >gi|15889107|ref|NP_354788.1| cold shock protein [Agrobacterium tumefaciens str. C58] gi|15156913|gb|AAK87573.1| cold shock protein [Agrobacterium tumefaciens str. C58] Length = 192 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T TE D+F+H + GL L GQ+V Y D Sbjct: 117 LERAIVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRYGDGD- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMAAE 179 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 G +KW++ KG+GFI P+ T+ DV LH S + G + EG Sbjct: 28 GVVKWFDVAKGFGFIVPDNGTQ---DVLLHVSCLRRDGYQTILEG 69 >gi|51595763|ref|YP_069954.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953] gi|108806689|ref|YP_650605.1| cold shock-like protein [Yersinia pestis Antiqua] gi|108812740|ref|YP_648507.1| cold shock-like protein [Yersinia pestis Nepal516] gi|145599569|ref|YP_001163645.1| cold shock-like protein [Yersinia pestis Pestoides F] gi|153948246|ref|YP_001401539.1| cold shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|162421137|ref|YP_001606435.1| cold shock DNA-binding domain-containing protein [Yersinia pestis Angola] gi|165924490|ref|ZP_02220322.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938972|ref|ZP_02227525.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009860|ref|ZP_02230758.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211781|ref|ZP_02237816.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399726|ref|ZP_02305244.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419851|ref|ZP_02311604.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424222|ref|ZP_02315975.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469384|ref|ZP_02334088.1| cold shock protein [Yersinia pestis FV-1] gi|170024887|ref|YP_001721392.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|186894842|ref|YP_001871954.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|218928546|ref|YP_002346421.1| cold shock-like protein [Yersinia pestis CO92] gi|229841368|ref|ZP_04461527.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843473|ref|ZP_04463619.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229895846|ref|ZP_04511016.1| Cold shock-like protein [Yersinia pestis Pestoides A] gi|229903148|ref|ZP_04518261.1| Cold shock-like protein [Yersinia pestis Nepal516] gi|270486942|ref|ZP_06204016.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|51589045|emb|CAH20663.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953] gi|108776388|gb|ABG18907.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108778602|gb|ABG12660.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] gi|115347157|emb|CAL20050.1| cold shock-like protein [Yersinia pestis CO92] gi|145211265|gb|ABP40672.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|152959741|gb|ABS47202.1| cold shock DNA-binding domain protein [Yersinia pseudotuberculosis IP 31758] gi|162353952|gb|ABX87900.1| cold shock DNA-binding domain protein [Yersinia pestis Angola] gi|165913119|gb|EDR31743.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923550|gb|EDR40682.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165991256|gb|EDR43557.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207552|gb|EDR52032.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962592|gb|EDR58613.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050434|gb|EDR61842.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057071|gb|EDR66834.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751421|gb|ACA68939.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186697868|gb|ACC88497.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|229678918|gb|EEO75021.1| Cold shock-like protein [Yersinia pestis Nepal516] gi|229689820|gb|EEO81881.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697734|gb|EEO87781.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700769|gb|EEO88798.1| Cold shock-like protein [Yersinia pestis Pestoides A] gi|270335446|gb|EFA46223.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|320015742|gb|ADV99313.1| Cold shock-like protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 69 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N +GYGFI+P + G DV+++++A+A+ +L EGQ V + Sbjct: 6 GRVKWFNQSEGYGFISPH---DGGSDVYVNKTAIANTKNKSLNEGQDVEF 52 >gi|238062313|ref|ZP_04607022.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|237884124|gb|EEP72952.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] Length = 128 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ KGYGF+T ++ G DVFL + A+ AG+ +L GQ V + V + + Sbjct: 4 GRVKWYDAAKGYGFVT----SDEGGDVFLPKGAL-PAGVTDLKGGQRVDFSVVDSRRGAQ 58 Query: 65 YSAENLKLVPKS 76 L P S Sbjct: 59 AMGVKLLEAPPS 70 >gi|91203628|emb|CAJ71281.1| similar to Cold shock protein (CspB) [Candidatus Kuenenia stuttgartiensis] Length = 79 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GFI +G G DVF+H S + G L +G+ V ++ V+ Sbjct: 15 GKVKWFDAKKGFGFIEQDG----GGDVFVHYSNIGGDGFKTLEDGEKVEFEVVE 64 >gi|288922018|ref|ZP_06416226.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] gi|288346634|gb|EFC80955.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] Length = 131 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ D+G+GF+ S + GDDVF+H++A+ AG+ L G V + Sbjct: 4 GKVKWFDVDRGFGFL----SRDDGDDVFVHKAAL-PAGVDRLKPGDRVEF 48 >gi|22126652|ref|NP_670075.1| cold shock-like protein [Yersinia pestis KIM 10] gi|45441022|ref|NP_992561.1| cold shock-like protein [Yersinia pestis biovar Microtus str. 91001] gi|149366655|ref|ZP_01888689.1| cold shock-like protein [Yersinia pestis CA88-4125] gi|21959665|gb|AAM86326.1|AE013880_6 cold shock protein [Yersinia pestis KIM 10] gi|45435881|gb|AAS61438.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001] gi|149291029|gb|EDM41104.1| cold shock-like protein [Yersinia pestis CA88-4125] Length = 77 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N +GYGFI+P + G DV+++++A+A+ +L EGQ V + Sbjct: 14 GRVKWFNQSEGYGFISPH---DGGSDVYVNKTAIANTKNKSLNEGQDVEF 60 >gi|49475595|ref|YP_033636.1| cold shock protein [Bartonella henselae str. Houston-1] gi|49238402|emb|CAF27629.1| Cold shock protein [Bartonella henselae str. Houston-1] Length = 191 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N DKG+GF++ TE D+F+H + GL L GQ+V + + + Sbjct: 117 LERAIVKWFNRDKGFGFLSRGQGTE---DIFVHMETLRRFGLAELRSGQVVLVRFGKGE- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMTAE 179 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G IKW++ KGYGFI P+ + D+ LH + + G + EG V Sbjct: 28 GVIKWFDGSKGYGFIVPD--LPNCPDILLHVTVMRRDGFQTVLEGAKVV 74 >gi|33595179|ref|NP_882822.1| cold shock protein [Bordetella parapertussis 12822] gi|33599462|ref|NP_887022.1| cold shock protein [Bordetella bronchiseptica RB50] gi|33565256|emb|CAE36055.1| cold shock protein [Bordetella parapertussis] gi|33567058|emb|CAE30971.1| cold shock protein [Bordetella bronchiseptica RB50] Length = 67 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW+N +KG+GFI PE G D+F H S + G L E Q V+Y Sbjct: 1 MQTGIVKWFNDEKGFGFIMPE---NGGPDLFAHYSEIQGEGHKALVEQQRVSY 50 >gi|302529053|ref|ZP_07281395.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] gi|302437948|gb|EFL09764.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] Length = 67 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++KW+N +KG+GFI+P+ + DVF+H S + G +L E V ++ Q Sbjct: 3 QGTVKWFNAEKGFGFISPD---DGSADVFVHYSEIQGNGFRSLDENARVEFEVGQ 54 >gi|251771202|gb|EES51783.1| putative cold-shock DNA-binding domain protein [Leptospirillum ferrodiazotrophum] Length = 320 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G +K YNPDKGYG I + G ++F+H SA+ + GL L GQ V ++ Sbjct: 3 KGRVKAYNPDKGYGTIL----LDDGQEIFVHGSAIQTDGLKVLEAGQRVRFE 50 >gi|71909055|ref|YP_286642.1| cold-shock protein, DNA-binding:protein of unknown function DUF1294 [Dechloromonas aromatica RCB] gi|71848676|gb|AAZ48172.1| Cold-shock protein, DNA-binding:Protein of unknown function DUF1294 [Dechloromonas aromatica RCB] Length = 206 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G I + D+GYGFITP G G+ VFLH A + E ++VTY+ +Q D Sbjct: 1 MRLQGRITSWKDDQGYGFITPNG---GGNPVFLHIKAFTRRQPRPVGE-EIVTYE-LQQD 55 Query: 61 ANGKYSAENLKLV 73 G++ AE+++ V Sbjct: 56 KRGRWRAESVEFV 68 >gi|254363803|ref|ZP_04979849.1| cold shock-like protein B cspB [Mycobacterium tuberculosis str. Haarlem] gi|134149317|gb|EBA41362.1| cold shock-like protein B cspB [Mycobacterium tuberculosis str. Haarlem] Length = 135 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+PDKG+GF++ EG G+DV++ SA+ + + L GQ V + A+G+ Sbjct: 4 GKVKWYDPDKGFGFLSQEG----GEDVYVRSSALPTF-VEALKAGQRVEFGI----ASGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|302552283|ref|ZP_07304625.1| cold shock protein B [Streptomyces viridochromogenes DSM 40736] gi|302469901|gb|EFL32994.1| cold shock protein B [Streptomyces viridochromogenes DSM 40736] Length = 127 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVETLKPGQRVEFGVV 51 >gi|84503413|ref|ZP_01001473.1| cold shock DNA-binding domain protein [Oceanicola batsensis HTCC2597] gi|84388200|gb|EAQ01152.1| cold shock DNA-binding domain protein [Oceanicola batsensis HTCC2597] Length = 179 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N DKG+GF G T DDVF+H + ++GL +L G+ V V + GK + Sbjct: 108 VKWFNKDKGFGFANVFGGT---DDVFIHVEVLRASGLADLQPGEAVAL-RVIDGRRGKMA 163 Query: 67 AE 68 +E Sbjct: 164 SE 165 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW++P +G+GF+ E + G D+ LH + + + G ++ +G ++ Sbjct: 13 GTVKWFDPGRGFGFVVSE---DGGPDILLHANVLRNFGQSSVADGAKISI 59 >gi|292490283|ref|YP_003525722.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus Nc4] gi|291578878|gb|ADE13335.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus Nc4] Length = 70 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KGYGFI E G D+F+H ++ G +L EGQ V++ Sbjct: 7 GTVKWFNDAKGYGFIQRE---SGGSDLFVHFRSITGHGHKSLEEGQQVSF 53 >gi|254481328|ref|ZP_05094573.1| 'Cold-shock' DNA-binding domain protein [marine gamma proteobacterium HTCC2148] gi|214038491|gb|EEB79153.1| 'Cold-shock' DNA-binding domain protein [marine gamma proteobacterium HTCC2148] Length = 145 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFIT + G+++F+H ++ G L +GQ V+ +V+ + + Sbjct: 81 EEGEVKWFNVSKGFGFIT----KDDGEEIFVHFRSIIGEGRRGLKDGQRVS--FVEANTD 134 Query: 63 GKYSAENLK 71 AEN++ Sbjct: 135 KGPQAENVE 143 >gi|150017640|ref|YP_001309894.1| cold-shock DNA-binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904105|gb|ABR34938.1| putative cold-shock DNA-binding domain protein [Clostridium beijerinckii NCIMB 8052] Length = 69 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 5/52 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYD 55 G +KW++ ++GYGFI S + GDDVF+H S + G +L E + VT+D Sbjct: 6 GVVKWFDTERGYGFI----SCDKGDDVFVHHSQIKDKGPDKDLHEDESVTFD 53 >gi|3831556|gb|AAC69999.1| major cold shock protein [Enterococcus faecalis] Length = 50 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 5/54 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 KG+GFI+PE G+DVF+H SA+ G L EGQ VT+D V++ G +A Sbjct: 1 KGFGFISPE----DGNDVFVHFSAIQGDGFKTLEEGQAVTFD-VEDGHRGPQAA 49 >gi|124267389|ref|YP_001021393.1| cold-shock DNA-binding protein family protein [Methylibium petroleiphilum PM1] gi|124260164|gb|ABM95158.1| cold-shock DNA-binding protein family [Methylibium petroleiphilum PM1] Length = 69 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 V G++KW+N KG+GFI +G G DVF H + G L E Q V ++ Q Sbjct: 3 VQTGTVKWFNEAKGFGFIAQDG---GGADVFAHFRDIQGNGFKTLQENQRVEFEVKQ 56 >gi|329894353|ref|ZP_08270223.1| putative Cold-shock protein [gamma proteobacterium IMCC3088] gi|328923149|gb|EGG30472.1| putative Cold-shock protein [gamma proteobacterium IMCC3088] Length = 134 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW+N KG+GFI +SGD++F+H A+ + G +L +G V++ D Sbjct: 72 GTVKWFNATKGFGFIV----CDSGDEIFVHFRALRNGGRRSLKDGLPVSFVITSGD 123 >gi|254294221|ref|YP_003060244.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] gi|254042752|gb|ACT59547.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] Length = 166 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW++ KG+GFI P+ + G + LH S + G+ + EG L++ D V+ + Sbjct: 20 GRVKWFDSVKGFGFIIPDDGLD-GQEALLHISILREFGVEQVVEGMLISCDVVKRE 74 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 IKW+N KGYGF+ G E D+FLH + AGL GQ V Sbjct: 104 IKWFNRTKGYGFVHRVGEVE---DIFLHMVTLRKAGLEEAEPGQKV 146 >gi|227832058|ref|YP_002833765.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975] gi|262184088|ref|ZP_06043509.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975] gi|227453074|gb|ACP31827.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975] Length = 67 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N +KGYGFI E + D+F+H + + G L + Q V+++ + DA G+ Sbjct: 4 GTVKFFNAEKGYGFIEQE---DGSGDIFVHYTEIQGTGFRTLEDNQRVSFE-IGEDAKGQ 59 Query: 65 YSAENLKLV 73 A N+++V Sbjct: 60 -QATNVEVV 67 >gi|260775774|ref|ZP_05884670.1| cold shock protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608190|gb|EEX34359.1| cold shock protein [Vibrio coralliilyticus ATCC BAA-450] Length = 69 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI S +GDD+F+H ++ G L EG V++ Sbjct: 7 GTVKWFNETKGFGFI----SQANGDDLFVHFRSILGDGFKKLVEGDKVSF 52 >gi|262089577|gb|ACY24676.1| hypothetical protein [uncultured organism] Length = 192 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K +N ++G+GFI + + G D+F+H SA A G EG+ +T++ ++ D NGK Sbjct: 8 GKLKKWNAERGFGFIV---ADDGGQDIFVHISAFARDGR-QPAEGEALTFE-IEPDRNGK 62 Query: 65 YSAENLKLV 73 SA ++ V Sbjct: 63 RSAVRVRRV 71 >gi|170053777|ref|XP_001862831.1| RNA-binding protein lin-28 [Culex quinquefasciatus] gi|167874140|gb|EDS37523.1| RNA-binding protein lin-28 [Culex quinquefasciatus] Length = 181 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N KG+GFITP+ + G DVF+H+S + G +L + + V ++ D Sbjct: 26 GHCKWFNVIKGWGFITPD---DGGQDVFVHQSVLQMDGFRSLGQNEPVEFECKLTD 78 >gi|317406021|gb|EFV86296.1| cold shock-like protein [Achromobacter xylosoxidans C54] Length = 67 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI PE G D+F H S + G L E Q V+Y Q A G Sbjct: 4 GIVKWFNDAKGFGFIMPE---NGGKDLFAHFSEIVGDGHKALVENQRVSYVTAQG-AKGP 59 Query: 65 YSAE 68 ++ + Sbjct: 60 HATQ 63 >gi|297200512|ref|ZP_06917909.1| cold shock protein B [Streptomyces sviceus ATCC 29083] gi|197709638|gb|EDY53672.1| cold shock protein B [Streptomyces sviceus ATCC 29083] Length = 127 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVETLKPGQRVEFGVV 51 >gi|296394984|ref|YP_003659868.1| cold-shock DNA-binding domain-containing protein [Segniliparus rotundus DSM 44985] gi|296182131|gb|ADG99037.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM 44985] Length = 77 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 5/52 (9%) Query: 5 GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G+++W++P+KG+GFI P +GS E VF+ +A+ +G L E Q V ++ Sbjct: 4 GTVQWFDPEKGFGFIAPDDGSAE----VFVRYTAIEGSGFRKLVENQKVEFE 51 >gi|254498496|ref|ZP_05111222.1| cold shock domain-contain protein [Legionella drancourtii LLAP12] gi|254352272|gb|EET11081.1| cold shock domain-contain protein [Legionella drancourtii LLAP12] Length = 68 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI SG D F+H SA+ S G L EG V + + Sbjct: 7 GKVKWFNEGKGFGFI-----ESSGKDYFVHFSAIQSNGFKTLPEGAKVLFKMSKGQKG-- 59 Query: 65 YSAENLKLV 73 AE ++L+ Sbjct: 60 LQAEEVELI 68 >gi|134295036|ref|YP_001118771.1| cold-shock DNA-binding protein family protein [Burkholderia vietnamiensis G4] gi|134138193|gb|ABO53936.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis G4] Length = 67 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + G L E Q V+++ V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMEGFKTLKENQRVSFE-VKVGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|239832152|ref|ZP_04680481.1| Cold shock-like protein cspG [Ochrobactrum intermedium LMG 3301] gi|239824419|gb|EEQ95987.1| Cold shock-like protein cspG [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T TE D+F+H + G+ L GQ+V + + D Sbjct: 158 LERVIVKWFNRTKGFGFLTRGEGTE---DIFIHMETLRRFGMMELRPGQVVLIRFGEGD- 213 Query: 62 NGKYSAE 68 G +AE Sbjct: 214 KGLMAAE 220 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KGYGFI P+ +D+ LH +++ G EG + + Q + Sbjct: 68 GHIKWFDVAKGYGFIVPD--QPGLNDILLHVTSLRRDGFQTALEGARIVCEVRQGE 121 >gi|297624311|ref|YP_003705745.1| cold-shock DNA-binding domain-containing protein [Truepera radiovictrix DSM 17093] gi|297165491|gb|ADI15202.1| cold-shock DNA-binding domain protein [Truepera radiovictrix DSM 17093] Length = 79 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ +KG+GFI + + G DVF H SA+ +G +L EG V ++ Q Sbjct: 4 GRVKWFSNEKGFGFIEQD---DGGADVFCHFSAITGSGYRSLNEGDEVEFEVEQ 54 >gi|146312143|ref|YP_001177217.1| cold-shock DNA-binding protein family protein [Enterobacter sp. 638] gi|145319019|gb|ABP61166.1| cold-shock DNA-binding protein family [Enterobacter sp. 638] Length = 72 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG +KWY DKG+GFI+P + G D+ +H S + L EGQ V Y Sbjct: 6 RGLVKWYKEDKGFGFISP---LDGGKDISVHVSNLKGDDCQTLFEGQKVEY 53 >gi|33152437|ref|NP_873790.1| cold shock-like protein CspD [Haemophilus ducreyi 35000HP] gi|33148660|gb|AAP96179.1| cold shock-like protein CspD [Haemophilus ducreyi 35000HP] Length = 68 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +H G +KW+N KG+GFIT + T G D+F H S + G +L GQ V ++ V N+ Sbjct: 1 MHIGIVKWFNNVKGFGFITCD--TVEG-DIFAHFSEIKQDGYRSLKVGQKVQFELVTNE 56 >gi|293393437|ref|ZP_06637748.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] gi|291424038|gb|EFE97256.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] Length = 75 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ KG+GFI+P + DVF+H SA+ S L EGQ V + Sbjct: 12 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEF 58 >gi|323452553|gb|EGB08427.1| hypothetical protein AURANDRAFT_16921 [Aureococcus anophagefferens] Length = 70 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 4/58 (6%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 +N KGYGFITP+ G DVF+H++ + + G +L EG+ V ++ ++ D NG+ A Sbjct: 1 FNTVKGYGFITPD---NGGGDVFVHQTQIYARGFRSLAEGENVEFE-IEMDQNGRERA 54 >gi|146283892|ref|YP_001174045.1| cold-shock DNA-binding domain-containing protein [Pseudomonas stutzeri A1501] gi|145572097|gb|ABP81203.1| cold-shock DNA-binding domain protein [Pseudomonas stutzeri A1501] Length = 235 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M RG++K +N DKG+GFI PE + G+++F+H SAV G G V + D Sbjct: 1 MERRGTLKSWNDDKGFGFIRPE---QGGEELFVHISAV--HGERRPLVGGRVLF-VAGRD 54 Query: 61 ANGKYSAENLKL 72 A G+ AE+++L Sbjct: 55 AQGRLRAEHVRL 66 >gi|296134718|ref|YP_003641960.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12] gi|294338681|emb|CAZ87012.1| Cold shock protein [Thiomonas sp. 3As] gi|295794840|gb|ADG29630.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12] Length = 69 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 5/58 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++KW+N KG+GFI +G GD D+F+H S + G L E Q V ++ Q Sbjct: 3 MQTGAVKWFNESKGFGFIAQDG----GDADLFVHFSEIQGNGFKTLAENQRVQFEVKQ 56 >gi|192360401|ref|YP_001982239.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107] gi|190686566|gb|ACE84244.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107] Length = 71 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +GYGFIT E +D+F+H + + G +L EGQ V + Sbjct: 7 GTVKWFNNVRGYGFIT---RGEGSEDIFVHYRNIRAEGYRSLAEGQSVEF 53 >gi|119476408|ref|ZP_01616759.1| cold-shock domain family protein [marine gamma proteobacterium HTCC2143] gi|119450272|gb|EAW31507.1| cold-shock domain family protein [marine gamma proteobacterium HTCC2143] Length = 69 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IKW+N KG+GFI + G D+F+H ++ G L EGQ V + V+ A G Sbjct: 7 GTIKWFNNAKGFGFI----AQTEGADIFVHFRSIRGEGYKTLDEGQEVEFTVVEG-AKGL 61 Query: 65 YSAENLKL 72 + + KL Sbjct: 62 QAEDVCKL 69 >gi|3821911|gb|AAC69697.1| major cold shock protein [Lactococcus lactis subsp. lactis] Length = 50 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 4/42 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 KG+GFIT TE G+DVF H SA+ + G L EGQ VT+D Sbjct: 1 KGFGFIT----TEEGNDVFAHFSAIQTDGFKTLDEGQKVTFD 38 >gi|49474233|ref|YP_032275.1| cold shock protein [Bartonella quintana str. Toulouse] gi|49239737|emb|CAF26119.1| Cold shock protein [Bartonella quintana str. Toulouse] Length = 191 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N DKG+GF++ TE D+F+H + GL L GQ+V + Sbjct: 117 LERAIVKWFNRDKGFGFLSRGQGTE---DIFVHMETLRRFGLAELRSGQVVLVRF 168 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 G IKW++ KGYGFI P+ + D+ LH + + G EG Sbjct: 28 GVIKWFDGSKGYGFIIPD--LPNFPDILLHVTVMRRDGFQTALEG 70 >gi|239981450|ref|ZP_04703974.1| putative cold shock protein [Streptomyces albus J1074] gi|291453301|ref|ZP_06592691.1| cold shock protein [Streptomyces albus J1074] gi|291356250|gb|EFE83152.1| cold shock protein [Streptomyces albus J1074] Length = 127 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVEALKPGQRVEFGVV 51 >gi|119503291|ref|ZP_01625375.1| putative Cold-shock protein [marine gamma proteobacterium HTCC2080] gi|119460937|gb|EAW42028.1| putative Cold-shock protein [marine gamma proteobacterium HTCC2080] Length = 70 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KG+GFIT T+ +D+F+H A+ G +L EG V + + D Sbjct: 7 GVVKWFNNAKGFGFIT---MTDREEDIFVHFRAIQGDGYRSLNEGDAVEFTLAEGD 59 >gi|331699393|ref|YP_004335632.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326954082|gb|AEA27779.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans CB1190] Length = 156 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ DKG+GF+ +G G+DV++ +SA+ + G+ +L GQ V + A G+ Sbjct: 32 GRVKWYDADKGFGFLAQDG----GEDVYVRKSALPT-GVESLKSGQRVEFGM----AEGR 82 Query: 65 YSAENLKL 72 + L++ Sbjct: 83 RGPQALQV 90 >gi|302560009|ref|ZP_07312351.1| cold-shock domain family protein [Streptomyces griseoflavus Tu4000] gi|302477627|gb|EFL40720.1| cold-shock domain family protein [Streptomyces griseoflavus Tu4000] Length = 127 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVEALKPGQRVEFGVV 51 >gi|189347308|ref|YP_001943837.1| cold-shock DNA-binding domain protein [Chlorobium limicola DSM 245] gi|189341455|gb|ACD90858.1| cold-shock DNA-binding domain protein [Chlorobium limicola DSM 245] Length = 85 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + R +KW++ KGYGFI P G G+DVF+H SA+ S F + Q ++V Sbjct: 1 MERSKVKWFDGKKGYGFIVNPNG----GEDVFVHFSAIVSEQTFKVL-NQDADVEFVLEK 55 Query: 61 ANGKYSAENLK 71 Y A+N++ Sbjct: 56 TQKGYQAKNVR 66 >gi|317508884|ref|ZP_07966523.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316252845|gb|EFV12276.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 77 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 5/52 (9%) Query: 5 GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G+++W++P+KG+GFI P +GS E VF+ +A+ G L E Q V ++ Sbjct: 4 GTVQWFDPEKGFGFIAPDDGSAE----VFVRYTAIEGRGFRKLVESQKVEFE 51 >gi|296535726|ref|ZP_06897893.1| cold-shock DNA-binding domain protein [Roseomonas cervicalis ATCC 49957] gi|296263939|gb|EFH10397.1| cold-shock DNA-binding domain protein [Roseomonas cervicalis ATCC 49957] Length = 270 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW++ +G+GF+TP+ + G DVFLH S + AG ++ +G+ ++ + Q Sbjct: 208 GTVKWFDQVRGFGFVTPD---DGGADVFLHSSVLQRAGKQDVQQGEKLSLEVRQ 258 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43 +KWYN KG+GF+ G DVF H SA+ AG+ Sbjct: 18 VKWYNGRKGFGFVL----GPDGQDVFFHASALTEAGI 50 >gi|269139514|ref|YP_003296215.1| cold shock-like protein [Edwardsiella tarda EIB202] gi|267985175|gb|ACY85004.1| cold shock-like protein [Edwardsiella tarda EIB202] gi|304559403|gb|ADM42067.1| Cold shock protein CspI [Edwardsiella tarda FL6-60] Length = 69 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KWY+P G G I+P + GDD++++R+ +ASA L EGQ V + Sbjct: 6 GFVKWYDPSAGLGVISP---LDGGDDLYVNRTGIASARNKLLREGQRVEF 52 >gi|126667266|ref|ZP_01738239.1| Cold shock protein [Marinobacter sp. ELB17] gi|126628211|gb|EAZ98835.1| Cold shock protein [Marinobacter sp. ELB17] Length = 77 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KGYGFI +G DD+F H SA+ G L GQ V+++ Sbjct: 4 GKVKWFNNAKGYGFIIEDGYN---DDLFAHFSAIQMDGYKTLKAGQAVSFE 51 >gi|312078159|ref|XP_003141617.1| cold-shock DNA-binding domain-containing protein [Loa loa] gi|307763216|gb|EFO22450.1| cold-shock DNA-binding domain-containing protein [Loa loa] Length = 199 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 8/55 (14%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHR-----SAVASAGLFNLTEGQLVTY 54 G+ KW+N KGYGFITP+ + GDDVF+H+ S + G +L G+ V + Sbjct: 11 GTCKWFNVLKGYGFITPD---QGGDDVFVHQASEIFSELNMDGFRSLDAGERVRF 62 >gi|3831558|gb|AAC70000.1| major cold shock protein [Pediococcus pentosaceus] Length = 50 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 4/47 (8%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 KG+GFIT E G DVF+H SA+ S G L EGQ V++D ++D Sbjct: 1 KGFGFIT----REDGSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESD 43 >gi|3821921|gb|AAC69702.1| major cold shock protein [Lactobacillus acidophilus] Length = 50 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 4/47 (8%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 KG+GFIT E G DVF+H SA+ G +L EGQ V+YD Q+D Sbjct: 1 KGFGFIT----GEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSD 43 >gi|297588480|ref|ZP_06947123.1| CspA family cold shock transcriptional regulator [Finegoldia magna ATCC 53516] gi|297573853|gb|EFH92574.1| CspA family cold shock transcriptional regulator [Finegoldia magna ATCC 53516] Length = 67 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYD 55 +G++KW+N KG+GFI STE DVF+H +A+ G + L E Q V +D Sbjct: 3 KGTVKWFNATKGFGFI----STEDHGDVFVHYTALEDNGEYRKLEENQEVEFD 51 >gi|239930549|ref|ZP_04687502.1| putative cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291438911|ref|ZP_06578301.1| cold shock protein B [Streptomyces ghanaensis ATCC 14672] gi|291341806|gb|EFE68762.1| cold shock protein B [Streptomyces ghanaensis ATCC 14672] Length = 127 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVEALKPGQRVEFGVV 51 >gi|270261474|ref|ZP_06189747.1| hypothetical protein SOD_a07060 [Serratia odorifera 4Rx13] gi|270044958|gb|EFA18049.1| hypothetical protein SOD_a07060 [Serratia odorifera 4Rx13] Length = 70 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ S L EGQ V + +++ A G Sbjct: 7 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQRVEF-TIESGAKG 61 >gi|320009321|gb|ADW04171.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] Length = 127 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGADVFVH-SSVLPAGVEALKPGQRVEFGVV 51 >gi|29830450|ref|NP_825084.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29607562|dbj|BAC71619.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 127 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVEALKPGQRVEFGVV 51 >gi|301321057|gb|ADK69700.1| cold-shock DNA-binding domain protein [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 69 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G +KW+N +KG+GFIT + + DVF++ S + G L +GQ VTY+ Sbjct: 1 MNTGIVKWFNDEKGFGFITNDSDNK---DVFVYYSNINVNGYKTLEQGQKVTYE 51 >gi|182436969|ref|YP_001824688.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777583|ref|ZP_08236848.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465485|dbj|BAG20005.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657916|gb|EGE42762.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 127 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVEALKPGQRVEFGVV 51 >gi|157370303|ref|YP_001478292.1| cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] gi|157322067|gb|ABV41164.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] Length = 70 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ KG+GFI+P + DVF+H SA+ S L EGQ V + Sbjct: 7 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQRVEF 53 >gi|33591645|ref|NP_879289.1| cold shock protein [Bordetella pertussis Tohama I] gi|33571288|emb|CAE44757.1| cold shock protein [Bordetella pertussis Tohama I] gi|332381065|gb|AEE65912.1| cold shock protein [Bordetella pertussis CS] Length = 67 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW+N +KG+GFI PE G D+F H S + G L E Q V+Y Sbjct: 1 MQTGIVKWFNDEKGFGFIMPE---NGGPDLFAHYSEIQGEGHKVLVEQQRVSY 50 >gi|153009253|ref|YP_001370468.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561141|gb|ABS14639.1| putative cold-shock DNA-binding domain protein [Ochrobactrum anthropi ATCC 49188] Length = 193 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T TE D+F+H + G+ L GQ+V + + D Sbjct: 118 LERVIVKWFNRTKGFGFLTRGEGTE---DIFIHMETLRRFGMMELRPGQVVLIRFGEGD- 173 Query: 62 NGKYSAE 68 G +AE Sbjct: 174 KGLMAAE 180 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KGYGFI P+ +D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLNDILLHVTSLRRDGFQTALEGARIVCEVRNGD 81 >gi|294636900|ref|ZP_06715228.1| cold-shock DNA-binding domain protein [Edwardsiella tarda ATCC 23685] gi|291089891|gb|EFE22452.1| cold-shock DNA-binding domain protein [Edwardsiella tarda ATCC 23685] Length = 69 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KWY+P G G I+P + GDD+++ R+A+AS+ L EGQ V + Sbjct: 6 GFVKWYDPSAGLGVISP---LDGGDDLYVSRTAIASSRNKLLREGQRVEF 52 >gi|195020347|ref|XP_001985176.1| GH16919 [Drosophila grimshawi] gi|193898658|gb|EDV97524.1| GH16919 [Drosophila grimshawi] Length = 345 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G+LV +D V Sbjct: 50 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVV 103 >gi|308805262|ref|XP_003079943.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri] gi|116058400|emb|CAL53589.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri] Length = 125 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 4/48 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50 RG +KW+N KG+G+ITP+ + DVF+H+SA+ G F T+G+ Sbjct: 11 RRGKVKWFNCTKGFGYITPD---DGEPDVFVHQSALKMEG-FRRTDGR 54 >gi|2970679|gb|AAC06034.1| Y box protein [Drosophila silvestris] Length = 342 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G+LV +D V Sbjct: 50 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVV 103 >gi|290959486|ref|YP_003490668.1| cold shock protein B [Streptomyces scabiei 87.22] gi|260649012|emb|CBG72126.1| putative cold shock protein B [Streptomyces scabiei 87.22] Length = 127 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVDTLKPGQKVEFGVV 51 >gi|83649125|ref|YP_437560.1| cold shock protein [Hahella chejuensis KCTC 2396] gi|83637168|gb|ABC33135.1| Cold shock protein [Hahella chejuensis KCTC 2396] Length = 71 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 8/65 (12%) Query: 5 GSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KGYGFI + EG DVF+H SA+ G L G V Y VQ+ + G Sbjct: 9 GMVKWFNNAKGYGFIESAEG------DVFVHYSAIRKDGYKTLRAGSHVEYQ-VQHSSKG 61 Query: 64 KYSAE 68 ++ E Sbjct: 62 LFAQE 66 >gi|300173064|ref|YP_003772230.1| cold shock protein [Leuconostoc gasicomitatum LMG 18811] gi|299887443|emb|CBL91411.1| Cold shock protein [Leuconostoc gasicomitatum LMG 18811] Length = 74 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 5/73 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K + ++GYG+ITP+ + G+DVF+H + + G +L +G+ V Y VQ N Sbjct: 4 GIVKIWQKERGYGYITPD---DGGEDVFVHFNGIDMIGFKSLIQGEKVNYVLVQGFKN-- 58 Query: 65 YSAENLKLVPKSS 77 Y A + + K + Sbjct: 59 YQAAQVSPIMKKA 71 >gi|325287735|ref|YP_004263525.1| cold-shock DNA-binding domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323189|gb|ADY30654.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM 7489] Length = 63 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 7/55 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++K++N +KG+GFIT EG SG D+F+H S + + EG V Y+ + Sbjct: 3 KGTVKFFNDEKGFGFITEEG---SGKDIFVHISGLVD----EIREGDEVEYEVTE 50 >gi|242278634|ref|YP_002990763.1| cold-shock DNA-binding domain protein [Desulfovibrio salexigens DSM 2638] gi|242121528|gb|ACS79224.1| cold-shock DNA-binding domain protein [Desulfovibrio salexigens DSM 2638] Length = 69 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G + W+N KG+GFI E +G D+++H S V G L G+ V ++ + D Sbjct: 1 MSLKGVVSWFNDIKGFGFIVDE----AGRDIYVHYSEVLRDGFKTLNVGEKVVFEVIDED 56 Query: 61 ANGKYSAENL 70 K +A + Sbjct: 57 TAPKATAVRI 66 >gi|320007562|gb|ADW02412.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] Length = 70 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G+++ ++ +KGYG+I P + G ++ +H SA+ A L GQ V++D VQ Sbjct: 4 GTVQVFSAEKGYGYIRP---STGGPEIIVHFSAIVEACPVGLVAGQTVSFDIVQR 55 >gi|16273340|ref|NP_439584.1| cold shock-like protein [Haemophilus influenzae Rd KW20] gi|68250036|ref|YP_249148.1| cold shock-like protein CspD [Haemophilus influenzae 86-028NP] gi|145630737|ref|ZP_01786515.1| cold shock-like protein CspD [Haemophilus influenzae R3021] gi|145632798|ref|ZP_01788531.1| cold shock-like protein CspD [Haemophilus influenzae 3655] gi|145634990|ref|ZP_01790697.1| cold shock-like protein CspD [Haemophilus influenzae PittAA] gi|145636144|ref|ZP_01791814.1| cold shock-like protein CspD [Haemophilus influenzae PittHH] gi|145638951|ref|ZP_01794559.1| cold shock-like protein CspD [Haemophilus influenzae PittII] gi|145641592|ref|ZP_01797169.1| cold shock-like protein CspD [Haemophilus influenzae R3021] gi|148825975|ref|YP_001290728.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae PittEE] gi|148826935|ref|YP_001291688.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae PittGG] gi|229844090|ref|ZP_04464231.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae 6P18H1] gi|229846710|ref|ZP_04466817.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae 7P49H1] gi|260580732|ref|ZP_05848558.1| cold shock domain-containing protein CspD [Haemophilus influenzae RdAW] gi|260583054|ref|ZP_05850836.1| cold shock domain-containing protein CspD [Haemophilus influenzae NT127] gi|1169113|sp|P46449|CSPD_HAEIN RecName: Full=Cold shock-like protein CspD gi|1574273|gb|AAC23082.1| cold shock-like protein (cspD) [Haemophilus influenzae Rd KW20] gi|68058235|gb|AAX88488.1| cold shock-like protein CspD [Haemophilus influenzae 86-028NP] gi|144983619|gb|EDJ91079.1| cold shock-like protein CspD [Haemophilus influenzae R3021] gi|144986454|gb|EDJ93020.1| cold shock-like protein CspD [Haemophilus influenzae 3655] gi|145267856|gb|EDK07853.1| cold shock-like protein CspD [Haemophilus influenzae PittAA] gi|145270666|gb|EDK10599.1| cold shock-like protein CspD [Haemophilus influenzae PittHH] gi|145271923|gb|EDK11832.1| cold shock-like protein CspD [Haemophilus influenzae PittII] gi|145273639|gb|EDK13508.1| cold shock-like protein CspD [Haemophilus influenzae 22.4-21] gi|148716135|gb|ABQ98345.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae PittEE] gi|148718177|gb|ABQ99304.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae PittGG] gi|229810199|gb|EEP45918.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae 7P49H1] gi|229813084|gb|EEP48772.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae 6P18H1] gi|260092549|gb|EEW76486.1| cold shock domain-containing protein CspD [Haemophilus influenzae RdAW] gi|260093905|gb|EEW77811.1| cold shock domain-containing protein CspD [Haemophilus influenzae NT127] gi|301170221|emb|CBW29825.1| cold shock protein homolog [Haemophilus influenzae 10810] gi|309750920|gb|ADO80904.1| Cold shock protein CspD [Haemophilus influenzae R2866] gi|309973115|gb|ADO96316.1| Cold shock protein CspD [Haemophilus influenzae R2846] Length = 72 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI+ EG D+F H S + G +L GQ V ++ + +D G Sbjct: 4 GIVKWFNNAKGFGFISAEGVDA---DIFAHYSVIEMDGYRSLKAGQKVQFEVLHSD-KGS 59 Query: 65 YSAENLKLVP 74 ++ K++P Sbjct: 60 HAT---KIIP 66 >gi|1402757|gb|AAC80247.1| major cold-shock protein [Listeria grayi] Length = 45 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 4/48 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +KG+GFI S E G DVF+H SA+ G L EGQ VT+D ++D Sbjct: 1 EKGFGFI----SREDGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESD 44 >gi|312883792|ref|ZP_07743511.1| cold shock protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368541|gb|EFP96074.1| cold shock protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 69 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI+ E S DD+F+H + G L EG V++ Sbjct: 7 GTVKWFNETKGFGFISQENS----DDLFVHFRNILGDGFKKLVEGDKVSF 52 >gi|331703045|ref|YP_004399732.1| Cold shock protein [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256383681|gb|ACU78251.1| cold-shock DNA-binding domain, putative [Mycoplasma mycoides subsp. capri str. GM12] gi|256384512|gb|ACU79081.1| cold-shock DNA-binding domain, putative [Mycoplasma mycoides subsp. capri str. GM12] gi|296456011|gb|ADH22246.1| cold-shock DNA-binding domain, putative [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328801600|emb|CBW53753.1| Cold shock protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 69 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G +KW+N +KG+GFIT + + DVF++ S + G L +GQ VTY+ Sbjct: 1 MNTGIVKWFNDEKGFGFITNDSDNK---DVFVYFSNINVNGYKTLEQGQKVTYE 51 >gi|89092942|ref|ZP_01165894.1| cold shock domain protein CspD [Oceanospirillum sp. MED92] gi|89082967|gb|EAR62187.1| cold shock domain protein CspD [Oceanospirillum sp. MED92] Length = 70 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G +KW+N KGYGFI S E +D+F H SA+ G +L GQ V ++ Sbjct: 1 MQTGKVKWFNNSKGYGFIL---SDEHAEDLFAHYSAIDVDGYKSLKAGQAVEFE 51 >gi|319408547|emb|CBI82200.1| cold shock protein [Bartonella schoenbuchensis R1] Length = 191 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW++ DKG+GF++ TE D+F+H + GL L GQ+V + + + Sbjct: 117 LERAIVKWFDRDKGFGFLSRGQGTE---DIFIHMETLRRFGLAELRSGQVVIVRFGKGE- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMTAE 179 >gi|223982759|ref|ZP_03632987.1| hypothetical protein HOLDEFILI_00261 [Holdemania filiformis DSM 12042] gi|223965259|gb|EEF69543.1| hypothetical protein HOLDEFILI_00261 [Holdemania filiformis DSM 12042] Length = 65 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K +N +KGYGFI G DVF H S + G + E V +D ++ D Sbjct: 2 QGKVKMFNKEKGYGFI----KLSDGRDVFFHYSQLVMDGFKTIEENAEVEFDLIEGDRG- 56 Query: 64 KYSAENLK 71 Y A N+K Sbjct: 57 -YQAHNVK 63 >gi|163760322|ref|ZP_02167405.1| putative cold shock protein [Hoeflea phototrophica DFL-43] gi|162282721|gb|EDQ33009.1| putative cold shock protein [Hoeflea phototrophica DFL-43] Length = 191 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T E +D+F+H + GL L GQ+V + N Sbjct: 116 LERAIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRYGLAELRPGQVVLVRF-GNGE 171 Query: 62 NGKYSAE 68 G +AE Sbjct: 172 KGLMAAE 178 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G IKW++ KG+GFI P+ E DV LH + + G + EG + + +Q G Sbjct: 27 GVIKWFDVAKGFGFIIPDNGME---DVLLHVTCLRRDGYQTVLEGTRIVCE-IQKRERG 81 >gi|150024384|ref|YP_001295210.1| cold shock protein [Flavobacterium psychrophilum JIP02/86] gi|149770925|emb|CAL42390.1| Probable cold shock protein [Flavobacterium psychrophilum JIP02/86] Length = 66 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 6/51 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++K++N KGYGFIT + E+G D+F+H S + + L EG V+Y+ Sbjct: 4 GTVKFFNESKGYGFITDD---ETGKDIFVHASGIKAE---ELREGDKVSYE 48 >gi|325293188|ref|YP_004279052.1| cold shock protein [Agrobacterium sp. H13-3] gi|325061041|gb|ADY64732.1| cold shock protein [Agrobacterium sp. H13-3] Length = 192 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T TE D+F+H + GL L GQ+V + D Sbjct: 117 LERAIVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRFGDGD- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMAAE 179 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW++ KG+GFI P+ + DV LH S + G + EG + + D Sbjct: 28 GAVKWFDVAKGFGFIVPDNGMQ---DVLLHVSCLRRDGYQTILEGTRIVALIQRRD 80 >gi|294084974|ref|YP_003551734.1| cold shock protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664549|gb|ADE39650.1| cold shock protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 181 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G + WYN KGYGF+ + + ++FLHRS + GL L G V+ +N+ Sbjct: 31 IKEGELVWYNERKGYGFVKIDDT-----EIFLHRSTLDRFGLIRLLTGDRVSVSLTENE 84 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYD 55 R +K++N +GYGF+T E DDVF+H ++ G +L +GQ LV D Sbjct: 115 RAVVKFFNDVRGYGFVTAENID---DDVFVHSRVLSDCGFHSLLQGQKLLVKVD 165 >gi|328884184|emb|CCA57423.1| Cold shock protein CspC [Streptomyces venezuelae ATCC 10712] Length = 127 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVDALKPGQRVEFGVV 51 >gi|312113552|ref|YP_004011148.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311218681|gb|ADP70049.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 191 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 R +KW+N KG+GF+T TE D+F+H + G L GQ+V Y D Sbjct: 117 QRAMVKWFNRLKGFGFLTRGAGTE---DIFVHMETLRRFGFAELRPGQIVQVRYGHGD-K 172 Query: 63 GKYSAE 68 G +AE Sbjct: 173 GLMAAE 178 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KG+GFI P+G D+ +H + + G EG + + ++ D Sbjct: 28 GHIKWFDVSKGFGFIVPDGGLP---DILIHVTVLRRDGYQTAYEGARIVCEVLRRD 80 >gi|253990328|ref|YP_003041684.1| cold shock-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781778|emb|CAQ84941.1| cold shock-like protein cspd (csp-d) [Photorhabdus asymbiotica] Length = 73 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI P G+D+F H S + G L GQ V + Q Sbjct: 4 GTVKWFNNAKGFGFICP---ASGGEDIFAHYSTIQMDGYRTLKAGQKVHFSVHQ 54 >gi|239943237|ref|ZP_04695174.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998] gi|239989696|ref|ZP_04710360.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379] gi|291446710|ref|ZP_06586100.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|291349657|gb|EFE76561.1| cold shock protein [Streptomyces roseosporus NRRL 15998] Length = 127 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVDALKPGQRVEFGVV 51 >gi|115350919|ref|YP_772758.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria AMMD] gi|170698521|ref|ZP_02889592.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171315542|ref|ZP_02904778.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|172059932|ref|YP_001807584.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria MC40-6] gi|115280907|gb|ABI86424.1| cold-shock DNA-binding protein family [Burkholderia ambifaria AMMD] gi|170136605|gb|EDT04862.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171099379|gb|EDT44117.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|171992449|gb|ACB63368.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MC40-6] Length = 67 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S G+D+F H S + G L E Q V+++ V+ GK Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMDGFKTLKENQRVSFE-VKLGPKGK 59 Query: 65 YSA 67 +A Sbjct: 60 QAA 62 >gi|319898944|ref|YP_004159037.1| cold shock protein [Bartonella clarridgeiae 73] gi|319402908|emb|CBI76459.1| cold shock protein [Bartonella clarridgeiae 73] Length = 193 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N +KG+GF++ TE D+F+H + GL L GQ+V + + + Sbjct: 119 LERAIVKWFNREKGFGFLSRGQGTE---DIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 174 Query: 62 NGKYSAE 68 G +AE Sbjct: 175 KGLMTAE 181 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGFI P+ S D+ LH + + G EG V Q + K Sbjct: 30 GVIKWFDGSKGYGFIVPDFSDLP--DILLHVTVMRRDGFQTALEGAKVVCVVKQTERGLK 87 >gi|296138557|ref|YP_003645800.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola DSM 20162] gi|296026691|gb|ADG77461.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola DSM 20162] Length = 139 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KWY+ +KG+GF++ EG G+DV++ SA+ S G L +GQ V + Sbjct: 4 GKVKWYDAEKGFGFLSQEG----GEDVYVRSSALPS-GTDELKQGQRVEF 48 >gi|268590196|ref|ZP_06124417.1| cold shock domain protein CspD [Providencia rettgeri DSM 1131] gi|291314477|gb|EFE54930.1| cold shock domain protein CspD [Providencia rettgeri DSM 1131] Length = 81 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW+N KG+GFI P + G+D+F H S + G L GQ V + Sbjct: 1 METGIVKWFNNAKGFGFICP---ADGGEDIFAHYSCIQMDGYRTLKAGQKVQF 50 >gi|195128621|ref|XP_002008760.1| GI13673 [Drosophila mojavensis] gi|193920369|gb|EDW19236.1| GI13673 [Drosophila mojavensis] Length = 335 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G+LV +D V Sbjct: 48 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVV 101 >gi|195379482|ref|XP_002048507.1| GJ14010 [Drosophila virilis] gi|194155665|gb|EDW70849.1| GJ14010 [Drosophila virilis] Length = 340 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G+LV +D V Sbjct: 48 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVV 101 >gi|119470168|ref|ZP_01612934.1| nucleic acid-binding domain, cold-shock RNA chaperone [Alteromonadales bacterium TW-7] gi|119446589|gb|EAW27863.1| nucleic acid-binding domain, cold-shock RNA chaperone [Alteromonadales bacterium TW-7] Length = 72 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI +G +D+F H S + G L GQ VT++ Q Sbjct: 4 GKVKWFNNAKGFGFIVEDGCE---NDIFAHYSTIVMDGYKTLKAGQDVTFELEQ 54 >gi|294791478|ref|ZP_06756635.1| cold-shock domain family protein [Scardovia inopinata F0304] gi|294457949|gb|EFG26303.1| cold-shock domain family protein [Scardovia inopinata F0304] Length = 129 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 5/55 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G I+W++ KGYGFIT ++ G+DVFL ++A+ AG+ L +G V + + + Sbjct: 4 GKIRWFDAKKGYGFIT----SDDGEDVFLPKTAL-PAGISKLRKGAKVEFSRIDS 53 >gi|312193994|ref|YP_004014055.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] gi|311225330|gb|ADP78185.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] Length = 131 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KWY+ DKG+GF+ S + G DVF+H++A+ AG+ L G V + Sbjct: 4 GKVKWYDVDKGFGFL----SRDDGGDVFVHKAAL-PAGVEKLRAGDRVEF 48 >gi|332703395|ref|ZP_08423483.1| cold-shock DNA-binding domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332553544|gb|EGJ50588.1| cold-shock DNA-binding domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 99 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 RG + W++ +GYGFI E+G+DVF+ + G L +G+ VT+ ++ Sbjct: 22 RRGVVVWFHERRGYGFI----RDETGEDVFVSWPDILRPGFKTLAQGEQVTFT-LKPGEG 76 Query: 63 GKYSAENLKLVPKS 76 G+ +AE + L P + Sbjct: 77 GRKAAEVVPLQPSA 90 >gi|302535935|ref|ZP_07288277.1| cold shock protein [Streptomyces sp. C] gi|302444830|gb|EFL16646.1| cold shock protein [Streptomyces sp. C] Length = 127 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVDALKPGQRVEFGVV 51 >gi|163736548|ref|ZP_02143967.1| hypothetical protein RGBS107_15491 [Phaeobacter gallaeciensis BS107] gi|161390418|gb|EDQ14768.1| hypothetical protein RGBS107_15491 [Phaeobacter gallaeciensis BS107] Length = 178 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 10/78 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG---QLVTYDYVQND 60 RG +KW++P KG+GF+ S E G D+ LH + + + G ++ +G +LVT+ Sbjct: 12 RGLVKWFDPTKGFGFVV---SDEGGPDILLHVNVLRNFGQSSIADGAEVELVTH----RT 64 Query: 61 ANGKYSAENLKLVPKSSN 78 G + E L + P + + Sbjct: 65 ERGVQAVEVLSITPPARD 82 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G E DVFLH + +GL L G+ + + + G+ + Sbjct: 108 VKWFDKGKGFGFANVFGRDE---DVFLHVEVLRQSGLSELQPGEALGMRVI-DGKRGRMA 163 Query: 67 AENL 70 E L Sbjct: 164 VEVL 167 >gi|149908141|ref|ZP_01896805.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] gi|149808683|gb|EDM68616.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] Length = 69 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K++N KG+GFI E+G DVF+H S++ G LT+GQ V + Q + Sbjct: 7 GKVKFFNEAKGFGFI----EQENGPDVFVHFSSILVDGFKVLTDGQKVEFTVGQGQKGPQ 62 Query: 65 YSAENLK 71 AEN+K Sbjct: 63 --AENVK 67 >gi|37525539|ref|NP_928883.1| cold shock protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784967|emb|CAE13885.1| cold shock protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 73 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI P G+D+F H S + G L GQ V + Sbjct: 4 GTVKWFNNAKGFGFICP---ASGGEDIFAHYSTIQMDGYRTLKAGQKVNF 50 >gi|326692723|ref|ZP_08229728.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc argentinum KCTC 3773] Length = 74 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 5/74 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K + ++GYG+ITP+ E G DV++H + + G +L +G+ V+Y VQ + Sbjct: 4 GTVKIWQKERGYGYITPD---EGGADVYVHFNGIDMDGFKSLNQGERVSYVLVQGYKD-- 58 Query: 65 YSAENLKLVPKSSN 78 Y A ++ + K ++ Sbjct: 59 YQAAEVRPIMKKAS 72 >gi|88860126|ref|ZP_01134765.1| nucleic acid-binding domain, cold-shock RNA chaperone [Pseudoalteromonas tunicata D2] gi|88818120|gb|EAR27936.1| nucleic acid-binding domain, cold-shock RNA chaperone [Pseudoalteromonas tunicata D2] Length = 72 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI +G E D+F H S + G L GQ VT++ Sbjct: 4 GKVKWFNNAKGFGFIVADGREE---DIFAHFSTIVMDGYKTLKAGQDVTFE 51 >gi|329764741|ref|ZP_08256336.1| cold-shock DNA-binding domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138791|gb|EGG43032.1| cold-shock DNA-binding domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 63 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 8/57 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++KW+N KG+GFI ESGDD+F+H+S V G N EG V ++ Q Sbjct: 1 MEQGTVKWFNRTKGFGFI----ERESGDDLFVHKSDV--DGFIN--EGDKVEFEVGQ 49 >gi|307610887|emb|CBX00504.1| cold shock-like protein cspE [Legionella pneumophila 130b] Length = 56 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 RG +KW+N KG+GFI +G D F+H SA+ G NL +G V + Q Sbjct: 6 RGKVKWFNKAKGFGFI-----ESNGKDYFVHFSAIQGNGFKNLPDGARVLFKVGQ 55 >gi|260460741|ref|ZP_05808991.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|259033318|gb|EEW34579.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] Length = 198 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T TE D+F+H + G+ L GQ+V + + D Sbjct: 124 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRYGITELRPGQVVLVRFGRGD- 179 Query: 62 NGKYSAE 68 G +AE Sbjct: 180 KGLMAAE 186 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G+IKW++ KGYGFI P+ D+ LH + + G EG V Q + Sbjct: 34 GAIKWFDVAKGYGFILPDDGISG--DILLHVTCLRRDGFQTALEGARVVCLVKQGE 87 >gi|240171972|ref|ZP_04750631.1| cold shock-like protein B CspB [Mycobacterium kansasii ATCC 12478] Length = 134 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF+ S E G+DV++ RS+ AG+ L GQ V + A+G+ Sbjct: 4 GKVKWYDSEKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGI----ASGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|167855568|ref|ZP_02478329.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus parasuis 29755] gi|219870615|ref|YP_002474990.1| cold shock-like protein CspD [Haemophilus parasuis SH0165] gi|167853314|gb|EDS24567.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus parasuis 29755] gi|219690819|gb|ACL32042.1| cold shock-like protein CspD [Haemophilus parasuis SH0165] Length = 69 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT + S E D+F H S + G +L GQ V +++ D Sbjct: 4 GIVKWFNNAKGFGFITSD-SYEG--DIFAHFSVIEGEGYRSLKMGQKVHFEFTHGDKG-- 58 Query: 65 YSAENLKLVP 74 A +++VP Sbjct: 59 --ASAVRIVP 66 >gi|1402759|gb|AAC80246.1| major cold-shock protein [Listeria innocua] Length = 45 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 4/43 (9%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +KG+GFI E+GDDVF+H SA+ G +L EGQ VT+D Sbjct: 1 EKGFGFI----ERENGDDVFVHFSAIQGDGFKSLDEGQAVTFD 39 >gi|319404271|emb|CBI77864.1| cold shock protein [Bartonella rochalimae ATCC BAA-1498] Length = 193 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N +KG+GF++ TE D+F+H + GL L GQ+V + + + Sbjct: 119 LERAIVKWFNREKGFGFLSRGQGTE---DIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 174 Query: 62 NGKYSAE 68 G +AE Sbjct: 175 KGLMTAE 181 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGFI P+ D+ LH + + G EG V Q + K Sbjct: 30 GVIKWFDGSKGYGFIIPD--LPGLPDILLHVTVMRRDGFQTALEGAKVICVVKQTERGLK 87 >gi|281490767|ref|YP_003352747.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|281374536|gb|ADA64057.1| Cold-shock protein [Lactococcus lactis subsp. lactis KF147] Length = 66 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G+I W+N DKGYGFI + DVF + ++ EGQ VT+D ++ + Sbjct: 1 MNKGTINWFNADKGYGFIMADDRQ----DVFAYLLSIQGNDFKKYDEGQKVTFD-IKMTS 55 Query: 62 NGKYSA 67 G+Y++ Sbjct: 56 RGRYAS 61 >gi|238784536|ref|ZP_04628544.1| Cold shock-like protein [Yersinia bercovieri ATCC 43970] gi|238714599|gb|EEQ06603.1| Cold shock-like protein [Yersinia bercovieri ATCC 43970] Length = 65 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N +GYGFI+P + G DV++ ++A+A+ +L+EGQ V + Sbjct: 2 GRVKWFNQSEGYGFISPH---DGGLDVYVSKTAIANTKNRSLSEGQDVEF 48 >gi|304393756|ref|ZP_07375684.1| cold shock protein [Ahrensia sp. R2A130] gi|303294763|gb|EFL89135.1| cold shock protein [Ahrensia sp. R2A130] Length = 216 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 R +KW+N KG+GF+T TE D+F+H + GL L GQ V Y D G Sbjct: 143 RTEVKWFNRTKGFGFLTQGEGTE---DIFIHMETLRRFGLTELRPGQHVMVRYGHGD-KG 198 Query: 64 KYSAE 68 +AE Sbjct: 199 LMAAE 203 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G+IKW++ KG+GF+ P+ + DV LH S + G EG + + V+ Sbjct: 52 GAIKWFDVSKGFGFVVPD---DDMPDVLLHVSCLRDDGFQTAHEGARIVCEVVRK 103 >gi|284033793|ref|YP_003383724.1| cold-shock DNA-binding domain-containing protein [Kribbella flavida DSM 17836] gi|283813086|gb|ADB34925.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM 17836] Length = 127 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KWY+ +KG+GF+ S E G DV++ R+ AG+ NL GQ V + V+ Sbjct: 4 GKVKWYDSEKGFGFL----SKEEGGDVYV-RAEALPAGVTNLKPGQKVEFGVVE 52 >gi|294629991|ref|ZP_06708551.1| cold-shock domain family protein [Streptomyces sp. e14] gi|292833324|gb|EFF91673.1| cold-shock domain family protein [Streptomyces sp. e14] Length = 127 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPAGVDALKPGQRVEFGVV 51 >gi|213966424|ref|ZP_03394602.1| cold-shock DNA-binding domain protein [Corynebacterium amycolatum SK46] gi|213950944|gb|EEB62348.1| cold-shock DNA-binding domain protein [Corynebacterium amycolatum SK46] Length = 143 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G ++WY+ D+G+GF+ S G+DV++ ++ V G+ L GQ + YDY A+G+ Sbjct: 4 GKVRWYDKDRGFGFV----SNPDGEDVYIGKN-VLPKGVEELVTGQRLEYDY----ADGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 PGPQALRI 62 >gi|77360666|ref|YP_340241.1| cold-shock RNA chaperone [Pseudoalteromonas haloplanktis TAC125] gi|76875577|emb|CAI86798.1| nucleic acid-binding domain, cold-shock RNA chaperone [Pseudoalteromonas haloplanktis TAC125] Length = 72 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI +G +D+F H S + G L GQ VT++ Q Sbjct: 4 GKVKWFNNAKGFGFIVEDGCE---NDIFAHYSTIVMDGYKTLKAGQDVTFELEQ 54 >gi|315126396|ref|YP_004068399.1| cold-shock RNA chaperone [Pseudoalteromonas sp. SM9913] gi|315014910|gb|ADT68248.1| cold-shock RNA chaperone [Pseudoalteromonas sp. SM9913] Length = 72 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI +G +D+F H S + G L GQ VT++ Q Sbjct: 4 GKVKWFNNAKGFGFIVEDGCE---NDIFAHYSTIVMDGYKTLKAGQDVTFELQQ 54 >gi|1402769|gb|AAC80251.1| major cold-shock protein [Proteus vulgaris] Length = 47 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 2/42 (4%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 DKG+GFITP+ ++ DDVF+H SA+ S +L EGQ V++ Sbjct: 1 DKGFGFITPKDGSK--DDVFVHFSAIQSDSFKSLKEGQEVSF 40 >gi|13470456|ref|NP_102024.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|14021197|dbj|BAB47810.1| cold shock protein [Mesorhizobium loti MAFF303099] Length = 181 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T TE D+F+H + G+ L GQ+V + + D Sbjct: 107 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRYGITELRPGQVVLVRFGRGD- 162 Query: 62 NGKYSAE 68 G +AE Sbjct: 163 KGLMAAE 169 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G+IKW++ KGYGFI P+ D+ LH + + G EG V Q D Sbjct: 17 GAIKWFDVAKGYGFILPDDGVSG--DILLHVTCLRRDGFQTALEGARVVCLVKQGD 70 >gi|319407276|emb|CBI80917.1| cold shock protein [Bartonella sp. 1-1C] Length = 191 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N +KG+GF++ TE D+F+H + GL L GQ+V + + + Sbjct: 117 LERAIVKWFNREKGFGFLSRGQGTE---DIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMTAE 179 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGFI P+ S D+ LH + + G EG V Q + K Sbjct: 28 GVIKWFDGSKGYGFIIPD--LPSLPDILLHVTVMRRDGFQTALEGAKVICVVKQTERGLK 85 >gi|323342405|ref|ZP_08082637.1| cold shock protein B [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463517|gb|EFY08711.1| cold shock protein B [Erysipelothrix rhusiopathiae ATCC 19414] Length = 65 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +K +N +KG+GFIT E G D+F H + + G + EG V ++ V+++ Sbjct: 2 KGKVKTFNKNKGFGFITA----EDGQDIFFHYTHLIMEGFKTIEEGTEVEFELVESE 54 >gi|195953301|ref|YP_002121591.1| cold-shock DNA-binding domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932913|gb|ACG57613.1| cold-shock DNA-binding domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 71 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 7/71 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA--SAGLFNLTEGQLVTYDYVQNDAN 62 G++KW++ +KGYGF+T + ++ DVF+H SA+ G L +GQ V ++ V D+ Sbjct: 5 GTVKWFSKEKGYGFLTRD---DNQGDVFVHFSAIDPNRQGFKTLVQGQRVEFE-VDQDSK 60 Query: 63 GKYSAENLKLV 73 G A+N++++ Sbjct: 61 GP-RAKNVRVL 70 >gi|83815315|ref|YP_445098.1| cold-shock DNA-binding domain-containing protein [Salinibacter ruber DSM 13855] gi|294506974|ref|YP_003571032.1| 'Cold-shock' DNA-binding domain [Salinibacter ruber M8] gi|83756709|gb|ABC44822.1| 'Cold-shock' DNA-binding domain, putative [Salinibacter ruber DSM 13855] gi|294343302|emb|CBH24080.1| 'Cold-shock' DNA-binding domain [Salinibacter ruber M8] Length = 69 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 6/59 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G++KW++P +GYGF+ P+ DDVFLH S V +L EG + ++ + + Sbjct: 1 METGTVKWFSPAEGYGFVEPDNGE---DDVFLHHSEVPDE---DLEEGDRLEFEIEETE 53 >gi|157738090|ref|YP_001490774.1| cold-shock protein, DNA-binding [Arcobacter butzleri RM4018] gi|315636444|ref|ZP_07891687.1| cold shock protein CspA [Arcobacter butzleri JV22] gi|157699944|gb|ABV68104.1| cold-shock protein, DNA-binding [Arcobacter butzleri RM4018] gi|315479272|gb|EFU69962.1| cold shock protein CspA [Arcobacter butzleri JV22] Length = 72 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 5/58 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60 G++KW+N +KG+GFI E + + F+H S + S+ G L +GQ V+++ +ND Sbjct: 7 GTVKWFNSEKGFGFIQLENEDQ---EFFVHHSEINSSNYGRATLNDGQKVSFEIGKND 61 >gi|254196032|ref|ZP_04902457.1| cold-shock domain family protein [Burkholderia pseudomallei S13] gi|169652776|gb|EDS85469.1| cold-shock domain family protein [Burkholderia pseudomallei S13] Length = 57 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFIT S G+D+F H S + G L E Q V+++ Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMEGFKTLKENQRVSFE 51 >gi|319776304|ref|YP_004138792.1| cold shock protein [Haemophilus influenzae F3047] gi|319897065|ref|YP_004135260.1| cold shock protein homolog [Haemophilus influenzae F3031] gi|317432569|emb|CBY80929.1| cold shock protein homolog [Haemophilus influenzae F3031] gi|317450895|emb|CBY87120.1| cold shock protein homolog [Haemophilus influenzae F3047] Length = 72 Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI+ EG D+F H S + G +L GQ V ++ + D G Sbjct: 4 GIVKWFNNAKGFGFISAEGVDA---DIFAHYSVIEMDGYRSLKAGQKVQFEVLHGD-KGS 59 Query: 65 YSAENLKLVP 74 ++ K++P Sbjct: 60 HAT---KIIP 66 >gi|169824501|ref|YP_001692112.1| cold shock protein [Finegoldia magna ATCC 29328] gi|302380494|ref|ZP_07268959.1| cold shock protein CspD [Finegoldia magna ACS-171-V-Col3] gi|303233739|ref|ZP_07320393.1| cold shock protein CspD [Finegoldia magna BVS033A4] gi|167831306|dbj|BAG08222.1| cold shock protein [Finegoldia magna ATCC 29328] gi|302311437|gb|EFK93453.1| cold shock protein CspD [Finegoldia magna ACS-171-V-Col3] gi|302495173|gb|EFL54925.1| cold shock protein CspD [Finegoldia magna BVS033A4] Length = 67 Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55 +G +KW+N KG+GFI STE DVF+H +A+ G + L E Q V ++ Sbjct: 3 KGKVKWFNATKGFGFI----STEDQGDVFVHYTAIEDNGEYRKLEENQEVEFE 51 >gi|110634084|ref|YP_674292.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp. BNC1] gi|110285068|gb|ABG63127.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1] Length = 197 Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T TE D+F+H + G+ L GQ+V + + D Sbjct: 123 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGVTELRPGQVVLVRFGRGD- 178 Query: 62 NGKYSAE 68 G +AE Sbjct: 179 KGLMAAE 185 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G+IKW++ KG+GFI P+ E G DV LH S + G G V Sbjct: 33 GAIKWFDVAKGFGFILPD-IAEFG-DVLLHVSCLRRDGFQTALSGARVV 79 >gi|322831731|ref|YP_004211758.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|321166932|gb|ADW72631.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] Length = 70 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ KG+GFI+P + DVF+H SA+ S L EGQ V + Sbjct: 7 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEF 53 >gi|332535445|ref|ZP_08411230.1| cold shock protein CspD [Pseudoalteromonas haloplanktis ANT/505] gi|332035128|gb|EGI71641.1| cold shock protein CspD [Pseudoalteromonas haloplanktis ANT/505] Length = 72 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI +G +D+F H S + G L GQ VT++ Q Sbjct: 4 GKVKWFNNAKGFGFIVEDGCE---NDIFAHYSTIVMDGYKTLKAGQDVTFELEQ 54 >gi|42560588|ref|NP_975039.1| cold shock protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492084|emb|CAE76681.1| COLD SHOCK PROTEIN [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 69 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G +KW+N +KG+GFIT + + DVF++ S + G L +GQ VTY+ Sbjct: 1 MNTGIVKWFNDEKGFGFITNDSDNK---DVFVYYSNINVNGYKALEQGQKVTYE 51 >gi|116326594|ref|YP_796515.1| cold-shock DNA-binding protein family protein [Lactococcus lactis subsp. cremoris SK11] gi|125624080|ref|YP_001032563.1| cold shock protein cspC [Lactococcus lactis subsp. cremoris MG1363] gi|190571793|ref|YP_001966472.1| CSPC [Lactococcus lactis] gi|281492699|ref|YP_003354679.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|76574949|gb|ABA47418.1| cold shock protein C [Lactococcus lactis] gi|108736192|gb|ABG00321.1| CSPC [Lactococcus lactis] gi|116108962|gb|ABJ74084.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp. cremoris SK11] gi|124492888|emb|CAL97847.1| cold shock protein cspC [Lactococcus lactis subsp. cremoris MG1363] gi|281376356|gb|ADA65846.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|300070849|gb|ADJ60249.1| cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000] gi|326406196|gb|ADZ63267.1| cold shock protein CspC [Lactococcus lactis subsp. lactis CV56] gi|326407855|gb|ADZ64926.1| cold shock protein CspC [Lactococcus lactis subsp. lactis CV56] Length = 66 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G+I W+N DKGYGFI + DVF + ++ EGQ VT+D ++ + Sbjct: 1 MNKGTINWFNADKGYGFIMADDMQ----DVFAYLLSIQGNDFKKYDEGQKVTFD-IKMTS 55 Query: 62 NGKYSA 67 G+Y++ Sbjct: 56 RGRYAS 61 >gi|238920339|ref|YP_002933854.1| cold-shock DNA-binding domain, [Edwardsiella ictaluri 93-146] gi|238869908|gb|ACR69619.1| cold-shock DNA-binding domain, putative [Edwardsiella ictaluri 93-146] Length = 69 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 ++ G +KWY+P G G I+P + GDD+++ R+ +ASA L EGQ V + Sbjct: 2 ILKMGFVKWYDPTAGLGVISP---LDGGDDLYVSRTGIASAHNKLLREGQRVEF 52 >gi|1402737|gb|AAC80232.1| major cold-shock protein [Bacillus cereus] Length = 45 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 4/48 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +KG+GFI EG G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 EKGFGFIEVEG----GEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN 44 >gi|145222299|ref|YP_001132977.1| cold-shock DNA-binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315442733|ref|YP_004075612.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] gi|145214785|gb|ABP44189.1| cold-shock DNA-binding protein family [Mycobacterium gilvum PYR-GCK] gi|315261036|gb|ADT97777.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] Length = 136 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KWY+ +KG+GF+ S E G+DV++ RS+ AG+ L GQ V + Sbjct: 4 GRVKWYDAEKGFGFL----SQEEGEDVYV-RSSALPAGVEGLKAGQRVEF 48 >gi|332827423|gb|EGK00175.1| hypothetical protein HMPREF9455_03507 [Dysgonomonas gadei ATCC BAA-286] Length = 150 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 7/51 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G ++++NPDKGYGFI GST D F H S+ ++ +T+G +VT++ Sbjct: 86 GRVEYFNPDKGYGFIKHTGST---DKYFFHISSAPAS----ITDGNMVTFE 129 >gi|269125076|ref|YP_003298446.1| cold-shock DNA-binding domain-containing protein [Thermomonospora curvata DSM 43183] gi|268310034|gb|ACY96408.1| cold-shock DNA-binding domain protein [Thermomonospora curvata DSM 43183] Length = 135 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 5/57 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 V G +KWY+ KG+GF+T + G +VF+H SA+ S G+ +L GQ V + V+ Sbjct: 5 VPTGKVKWYDAGKGFGFLT----RDDGGEVFVHSSALPS-GVTSLKTGQRVEFGVVE 56 >gi|257878221|ref|ZP_05657874.1| cold-shock domain-contain protein [Enterococcus faecium 1,230,933] gi|257880999|ref|ZP_05660652.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,502] gi|257884656|ref|ZP_05664309.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,501] gi|257889581|ref|ZP_05669234.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,410] gi|257892479|ref|ZP_05672132.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,408] gi|258616270|ref|ZP_05714040.1| cold-shock domain-contain protein [Enterococcus faecium DO] gi|260559265|ref|ZP_05831451.1| cold-shock domain-containing protein [Enterococcus faecium C68] gi|261207798|ref|ZP_05922483.1| cold-shock domain-containing protein [Enterococcus faecium TC 6] gi|257812449|gb|EEV41207.1| cold-shock domain-contain protein [Enterococcus faecium 1,230,933] gi|257816657|gb|EEV43985.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,502] gi|257820494|gb|EEV47642.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,501] gi|257825941|gb|EEV52567.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,410] gi|257828858|gb|EEV55465.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,408] gi|260075022|gb|EEW63338.1| cold-shock domain-containing protein [Enterococcus faecium C68] gi|260078181|gb|EEW65887.1| cold-shock domain-containing protein [Enterococcus faecium TC 6] Length = 77 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KGYGFI S + +++F+H +A+ G L E Q+V ++ ++ Sbjct: 4 GIVKWFDNKKGYGFI----SYDDTEEIFVHFTAIEEEGFKTLEENQVVEFEIIE 53 >gi|256826183|ref|YP_003150143.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM 20547] gi|256689576|gb|ACV07378.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM 20547] Length = 133 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ DKG+GF+ ++G DVFL SA+ AG+ L G + Y VQ Sbjct: 4 GKVKWFDADKGFGFV----GDDAGSDVFLRASAL-PAGVTTLRPGTRLEYSIVQ 52 >gi|258654047|ref|YP_003203203.1| cold-shock DNA-binding domain-containing protein [Nakamurella multipartita DSM 44233] gi|258557272|gb|ACV80214.1| cold-shock DNA-binding domain protein [Nakamurella multipartita DSM 44233] Length = 101 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 RG +K++ PDKG+G IT + E G D ++H S + S G L G +V +DY Sbjct: 3 RGFVKFFKPDKGWGAITSDALPE-GSDAWVHFSVIESDGYRALDAGDVVDFDY 54 >gi|329941396|ref|ZP_08290675.1| cold shock protein B [Streptomyces griseoaurantiacus M045] gi|329299927|gb|EGG43826.1| cold shock protein B [Streptomyces griseoaurantiacus M045] Length = 127 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V AG+ L GQ V + V Sbjct: 4 GKVKWFNGEKGFGFL----SRDDGGDVFVH-SSVLPAGVDALKPGQRVEFGVV 51 >gi|225013100|ref|ZP_03703514.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-2A] gi|225002758|gb|EEG40740.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-2A] Length = 63 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFIT + ESG+DVF+H SA+ L EG V +YV+ D Sbjct: 3 GTVKFFNEAKGFGFITND---ESGEDVFVHISALNGV---TLREGAKV--EYVEEDGKKG 54 Query: 65 YSAENLKLV 73 A ++ ++ Sbjct: 55 KQASSISVL 63 >gi|240139761|ref|YP_002964238.1| putative tandem cold-shock DNA-binding domain protein [Methylobacterium extorquens AM1] gi|240009735|gb|ACS40961.1| putative tandem cold-shock DNA-binding domain protein [Methylobacterium extorquens AM1] Length = 181 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++P KG+GFI P+ + DV LH + + G +EG + + VQ Sbjct: 18 GRIKWFDPSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR 69 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N +G+GF++ T D+F+H + G+ L G+ V Y D Sbjct: 107 LERAVVKWFNRLRGFGFLSRGDDT---PDIFVHMETLRRYGIAELKPGEEVMVRY--GDG 161 Query: 62 NGKYSAENLKLV 73 + A ++LV Sbjct: 162 SKGAMAAEVRLV 173 >gi|90415923|ref|ZP_01223856.1| Cold shock protein [marine gamma proteobacterium HTCC2207] gi|90332297|gb|EAS47494.1| Cold shock protein [marine gamma proteobacterium HTCC2207] Length = 89 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW++ D+G+GFI P+ ++F H + G L Q VTYD V++ Sbjct: 1 MADTGRVKWFSNDRGFGFIEPDNGER---ELFAHHQNIIMEGYKTLKCFQRVTYD-VEHG 56 Query: 61 ANGKYSA 67 NG+++ Sbjct: 57 KNGRHAV 63 >gi|255036777|ref|YP_003087398.1| cold-shock DNA-binding domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254949533|gb|ACT94233.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM 18053] Length = 63 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 8/62 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G +K++N KG+GFI+PE E GDD+F+H S + + E V+Y+ V+N Sbjct: 1 MNKGKVKFFNETKGFGFISPE---EGGDDIFVHVSGLIDE----IRENDSVSYE-VENGR 52 Query: 62 NG 63 G Sbjct: 53 KG 54 >gi|289566250|ref|ZP_06446682.1| cold shock protein CspB [Enterococcus faecium D344SRF] gi|293553482|ref|ZP_06674110.1| cold-shock protein [Enterococcus faecium E1039] gi|293559343|ref|ZP_06675885.1| cold shock protein [Enterococcus faecium E1162] gi|293569841|ref|ZP_06680928.1| cold-shock protein [Enterococcus faecium E1071] gi|294616589|ref|ZP_06696365.1| cold-shock protein [Enterococcus faecium E1636] gi|294617895|ref|ZP_06697504.1| cold shock protein [Enterococcus faecium E1679] gi|294622251|ref|ZP_06701305.1| cold shock protein [Enterococcus faecium U0317] gi|314939747|ref|ZP_07846969.1| putative major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|314941752|ref|ZP_07848629.1| putative major cold shock protein CspA [Enterococcus faecium TX0133C] gi|314948297|ref|ZP_07851689.1| putative major cold shock protein CspA [Enterococcus faecium TX0082] gi|314952385|ref|ZP_07855392.1| putative major cold shock protein CspA [Enterococcus faecium TX0133A] gi|314991996|ref|ZP_07857449.1| putative major cold shock protein CspA [Enterococcus faecium TX0133B] gi|314995706|ref|ZP_07860796.1| putative major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|289161957|gb|EFD09825.1| cold shock protein CspB [Enterococcus faecium D344SRF] gi|291587589|gb|EFF19466.1| cold-shock protein [Enterococcus faecium E1071] gi|291590539|gb|EFF22272.1| cold-shock protein [Enterococcus faecium E1636] gi|291595840|gb|EFF27124.1| cold shock protein [Enterococcus faecium E1679] gi|291598222|gb|EFF29317.1| cold shock protein [Enterococcus faecium U0317] gi|291602359|gb|EFF32583.1| cold-shock protein [Enterococcus faecium E1039] gi|291606707|gb|EFF36099.1| cold shock protein [Enterococcus faecium E1162] gi|313590097|gb|EFR68942.1| putative major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|313593431|gb|EFR72276.1| putative major cold shock protein CspA [Enterococcus faecium TX0133B] gi|313595502|gb|EFR74347.1| putative major cold shock protein CspA [Enterococcus faecium TX0133A] gi|313599430|gb|EFR78273.1| putative major cold shock protein CspA [Enterococcus faecium TX0133C] gi|313640976|gb|EFS05556.1| putative major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|313645278|gb|EFS09858.1| putative major cold shock protein CspA [Enterococcus faecium TX0082] Length = 80 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KGYGFI S + +++F+H +A+ G L E Q+V ++ ++ Sbjct: 7 GIVKWFDNKKGYGFI----SYDDTEEIFVHFTAIEEEGFKTLEENQVVEFEIIE 56 >gi|27365451|ref|NP_760979.1| cold shock domain-containing protein CspD [Vibrio vulnificus CMCP6] gi|37680508|ref|NP_935117.1| cold shock-like protein CspD [Vibrio vulnificus YJ016] gi|27361599|gb|AAO10506.1| cold shock domain protein CspD [Vibrio vulnificus CMCP6] gi|37199256|dbj|BAC95088.1| cold shock-like protein CspD [Vibrio vulnificus YJ016] Length = 76 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI S + D+F H S + G L GQ VTY+ Sbjct: 7 GTVKWFNNAKGFGFIC---SDQEEGDIFAHYSTIQMDGYRTLKAGQQVTYE 54 >gi|108801438|ref|YP_641635.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. MCS] gi|108771857|gb|ABG10579.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS] Length = 147 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ +KG+GF+ S E G+DV++ RS+ AG+ L GQ V + A Sbjct: 12 VPTGRVKWYDAEKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGV----A 62 Query: 62 NGKYSAENLKL 72 G+ + L L Sbjct: 63 AGRRGPQALSL 73 >gi|1402739|gb|AAC80233.1| major cold-shock protein [Bacillus subtilis] Length = 45 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 EKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN 44 >gi|257898616|ref|ZP_05678269.1| cold-shock domain-contain protein [Enterococcus faecium Com15] gi|257836528|gb|EEV61602.1| cold-shock domain-contain protein [Enterococcus faecium Com15] Length = 76 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KGYGFI S + +++F+H +A+ G L E Q+V ++ ++ Sbjct: 4 GIVKWFDNKKGYGFI----SYDDTEEIFVHFTAIEEEGFKTLEENQVVEFEIIE 53 >gi|119383611|ref|YP_914667.1| cold-shock DNA-binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119373378|gb|ABL68971.1| cold-shock DNA-binding protein family [Paracoccus denitrificans PD1222] Length = 197 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%) Query: 5 GSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GF+T P+G G D+ LH + + + G ++ EG V +Q G Sbjct: 13 GVVKWFDGSKGFGFLTDPDG----GADILLHANVLRNFGQSSVAEGSHVIA-IIQKTPRG 67 Query: 64 KYSAENLKLVPKSSN 78 + E L++ P +S Sbjct: 68 MQAVEVLEITPPASE 82 >gi|301061696|ref|ZP_07202437.1| cold shock protein CspD [delta proteobacterium NaphS2] gi|300444156|gb|EFK08180.1| cold shock protein CspD [delta proteobacterium NaphS2] Length = 62 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 KW++ KG+GFI S E G D+F+H + + G L+EG V+++ ++D K Sbjct: 3 KWFSDRKGFGFI----SQEDGQDLFVHHTGIDMPGFKTLSEGDRVSFEIEESDRGPK 55 >gi|55822802|ref|YP_141243.1| cold shock protein A [Streptococcus thermophilus CNRZ1066] gi|55738787|gb|AAV62428.1| cold shock protein A [Streptococcus thermophilus CNRZ1066] Length = 72 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G+I W+N DKGYGFI + DVF + ++ EGQ VT+D ++ + Sbjct: 4 MNKGTINWFNADKGYGFIMADDMQ----DVFAYLISIQGNDFKKYDEGQKVTFD-IKMTS 58 Query: 62 NGKYSA 67 G+Y + Sbjct: 59 RGRYDS 64 >gi|257887492|ref|ZP_05667145.1| cold-shock domain-contain protein [Enterococcus faecium 1,141,733] gi|257895987|ref|ZP_05675640.1| cold-shock domain-contain protein [Enterococcus faecium Com12] gi|293377445|ref|ZP_06623647.1| major cold shock protein CspA [Enterococcus faecium PC4.1] gi|257823546|gb|EEV50478.1| cold-shock domain-contain protein [Enterococcus faecium 1,141,733] gi|257832552|gb|EEV58973.1| cold-shock domain-contain protein [Enterococcus faecium Com12] gi|292643963|gb|EFF62071.1| major cold shock protein CspA [Enterococcus faecium PC4.1] Length = 76 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KGYGFI S + +++F+H +A+ G L E Q+V ++ ++ Sbjct: 4 GIVKWFDNKKGYGFI----SYDDTEEIFVHFTAIEEEGFKTLEENQVVEFEIIE 53 >gi|227551399|ref|ZP_03981448.1| CspC family cold shock transcriptional regulator [Enterococcus faecium TX1330] gi|293570497|ref|ZP_06681552.1| cold-shock protein [Enterococcus faecium E980] gi|227179518|gb|EEI60490.1| CspC family cold shock transcriptional regulator [Enterococcus faecium TX1330] gi|291609443|gb|EFF38710.1| cold-shock protein [Enterococcus faecium E980] Length = 79 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KGYGFI S + +++F+H +A+ G L E Q+V ++ ++ Sbjct: 7 GIVKWFDNKKGYGFI----SYDDTEEIFVHFTAIEEEGFKTLEENQVVEFEIIE 56 >gi|194751983|ref|XP_001958302.1| GF10852 [Drosophila ananassae] gi|190625584|gb|EDV41108.1| GF10852 [Drosophila ananassae] Length = 347 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G++V +D V Sbjct: 63 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 116 >gi|319783223|ref|YP_004142699.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169111|gb|ADV12649.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 198 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T TE D+F+H + G+ L GQ+V + + D Sbjct: 124 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRYGVTELRPGQVVLVRFGRGD- 179 Query: 62 NGKYSAE 68 G +AE Sbjct: 180 KGLMAAE 186 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G+IKW++ KGYGFI P+ D+ LH + + G EG V Sbjct: 34 GAIKWFDVAKGYGFILPDDGISG--DILLHVTCLRRDGFQTALEGARVV 80 >gi|257387599|ref|YP_003177372.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] gi|257169906|gb|ACV47665.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] Length = 64 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 8/67 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++ ++N GYGFI E ++ DDVF H + +L EGQ V +D VQ D Sbjct: 3 QGTVDFFNDTGGYGFIDTE---DADDDVFFHMEDIGGP---DLEEGQEVEFDIVQADKGP 56 Query: 64 KYSAENL 70 + AENL Sbjct: 57 R--AENL 61 >gi|28897786|ref|NP_797391.1| cold shock-like protein CspD [Vibrio parahaemolyticus RIMD 2210633] gi|28805999|dbj|BAC59275.1| cold shock-like protein CspD [Vibrio parahaemolyticus RIMD 2210633] Length = 79 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI S E D+F H S + G L GQ V+Y+ Sbjct: 11 GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 58 >gi|320155835|ref|YP_004188214.1| cold shock protein CspD [Vibrio vulnificus MO6-24/O] gi|319931147|gb|ADV86011.1| cold shock protein CspD [Vibrio vulnificus MO6-24/O] Length = 73 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI S + D+F H S + G L GQ VTY+ Sbjct: 4 GTVKWFNNAKGFGFIC---SDQEEGDIFAHYSTIQMDGYRTLKAGQQVTYE 51 >gi|126731269|ref|ZP_01747076.1| cold shock DNA-binding domain protein [Sagittula stellata E-37] gi|126708180|gb|EBA07239.1| cold shock DNA-binding domain protein [Sagittula stellata E-37] Length = 175 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GF+ S G D+ LH + + + G ++ +G L+ +VQ G Sbjct: 13 GKVKWFDPVKGFGFVV---SDAGGPDILLHANVLRNFGQSSVADGALIEI-FVQRTDRGV 68 Query: 65 YSAENLKLVPKSSN 78 + + L + P + Sbjct: 69 QATQVLSIEPPETT 82 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G DDVF+H + +GL +L G+ + + + G+ + Sbjct: 108 VKWFDKAKGFGFANVFGKP---DDVFIHIEVLRRSGLSDLQPGEALAIRVI-DGRRGRMA 163 Query: 67 AE 68 E Sbjct: 164 ME 165 >gi|325478635|gb|EGC81747.1| major cold shock protein CspA [Anaerococcus prevotii ACS-065-V-Col13] Length = 66 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +K ++ KG+GFIT E G+D+F+H S + G L Q+V +D + DA Sbjct: 1 MKRGEVKIFDNKKGFGFITCE-----GEDLFVHYSDIDKDGFKALYPKQIVEFDRI--DA 53 Query: 62 NGKYSAENLKLV 73 A N+K+V Sbjct: 54 PRGPQAINVKIV 65 >gi|313236956|emb|CBY12203.1| unnamed protein product [Oikopleura dioica] Length = 270 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 10/60 (16%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG------LFNLTEGQLVTYDYVQ 58 G++KW+N +G+GFI + G DVFLH+S V +G LF L G+ V +D Q Sbjct: 87 GTVKWFNISRGFGFIE---RNDGGADVFLHQSGVVGSGRRHRFSLF-LKGGEEVEFDVAQ 142 >gi|254786003|ref|YP_003073432.1| cold-shock DNA-binding domain-containing protein [Teredinibacter turnerae T7901] gi|237684504|gb|ACR11768.1| cold-shock DNA-binding domain protein [Teredinibacter turnerae T7901] Length = 72 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 5 GSIKWYN--PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N +GYGFIT E +D+F+H + G +LTEGQ V ++ Sbjct: 7 GTVKWFNNASARGYGFITR---GEESEDIFVHYRNIRGEGYRSLTEGQKVEFE 56 >gi|254443950|ref|ZP_05057426.1| 'Cold-shock' DNA-binding domain, putative [Verrucomicrobiae bacterium DG1235] gi|198258258|gb|EDY82566.1| 'Cold-shock' DNA-binding domain, putative [Verrucomicrobiae bacterium DG1235] Length = 64 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 6/52 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G+IKW++ +KGYGFI +E GDD+F+H S + L EG V ++ Sbjct: 3 KGTIKWFDQEKGYGFIQ---QSEGGDDLFVHHSETDG---YALNEGDSVEFE 48 >gi|162452081|ref|YP_001614448.1| cold shock protein [Sorangium cellulosum 'So ce 56'] gi|161162663|emb|CAN93968.1| cold shock protein [Sorangium cellulosum 'So ce 56'] Length = 68 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N +KG+GFI E+G DVF+H S + G L E + V ++ Sbjct: 4 GKVKWFNDEKGWGFI----KQETGPDVFVHYSQINGEGRRRLFEDETVEFE 50 >gi|3121928|sp|Q51929|CSPA_PHOMO RecName: Full=Major cold shock protein gi|1402763|gb|AAC80249.1| major cold-shock protein [Photobacterium leiognathi subsp. mandapamensis] Length = 46 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KG+GF+T G DVF+H A+AS G LTEGQ V++D Q Sbjct: 1 EKGFGFLTQ---NNGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQ 43 >gi|148645030|gb|ABR01045.1| Csp [uncultured Geobacter sp.] Length = 56 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +N KG+GF+ EG G+DVF H SA+A G +L EG VT++ + Sbjct: 1 FNDGKGFGFLEQEG----GEDVFCHFSAIAGEGFKSLAEGDRVTFEVTK 45 >gi|120405994|ref|YP_955823.1| cold-shock DNA-binding domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119958812|gb|ABM15817.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii PYR-1] Length = 136 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF+ S E G+DV++ RS+ AG+ L GQ V + A G+ Sbjct: 4 GRVKWYDAEKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGV----AAGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|294787495|ref|ZP_06752748.1| cold-shock domain family protein [Parascardovia denticolens F0305] gi|315226929|ref|ZP_07868717.1| cold-shock domain family protein [Parascardovia denticolens DSM 10105] gi|294484851|gb|EFG32486.1| cold-shock domain family protein [Parascardovia denticolens F0305] gi|315121061|gb|EFT84193.1| cold-shock domain family protein [Parascardovia denticolens DSM 10105] Length = 129 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 5/55 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G I+W++ KGYGFIT ++ G+DVF+ ++A+ AG+ L +G V + V + Sbjct: 4 GEIRWFDAKKGYGFIT----SDDGEDVFMPKTAL-PAGVTTLRKGAKVEFSRVDS 53 >gi|156973854|ref|YP_001444761.1| hypothetical protein VIBHAR_01564 [Vibrio harveyi ATCC BAA-1116] gi|156525448|gb|ABU70534.1| hypothetical protein VIBHAR_01564 [Vibrio harveyi ATCC BAA-1116] Length = 79 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI S E D+F H S + G L GQ V+Y+ Sbjct: 11 GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 58 >gi|153837326|ref|ZP_01989993.1| cold shock domain protein CspD [Vibrio parahaemolyticus AQ3810] gi|260365334|ref|ZP_05777885.1| cold shock domain protein CspD [Vibrio parahaemolyticus K5030] gi|260876950|ref|ZP_05889305.1| cold shock domain protein CspD [Vibrio parahaemolyticus AN-5034] gi|260897909|ref|ZP_05906405.1| cold shock domain protein CspD [Vibrio parahaemolyticus Peru-466] gi|260901418|ref|ZP_05909813.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037] gi|149749357|gb|EDM60130.1| cold shock domain protein CspD [Vibrio parahaemolyticus AQ3810] gi|308085479|gb|EFO35174.1| cold shock domain protein CspD [Vibrio parahaemolyticus Peru-466] gi|308093637|gb|EFO43332.1| cold shock domain protein CspD [Vibrio parahaemolyticus AN-5034] gi|308107511|gb|EFO45051.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037] gi|308112690|gb|EFO50230.1| cold shock domain protein CspD [Vibrio parahaemolyticus K5030] gi|328473238|gb|EGF44086.1| cold shock-like protein CspD [Vibrio parahaemolyticus 10329] Length = 72 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI S E D+F H S + G L GQ V+Y+ Sbjct: 4 GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 51 >gi|163802086|ref|ZP_02195982.1| cold shock-like protein CspD [Vibrio sp. AND4] gi|159174227|gb|EDP59035.1| cold shock-like protein CspD [Vibrio sp. AND4] Length = 72 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI S E D+F H S + G L GQ V+Y+ Sbjct: 4 GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 51 >gi|118468185|ref|YP_889929.1| cold-shock DNA-binding domain-containing protein [Mycobacterium smegmatis str. MC2 155] gi|118169472|gb|ABK70368.1| 'Cold-shock' DNA-binding domain protein [Mycobacterium smegmatis str. MC2 155] Length = 149 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KWY+ +KG+GF+ S E G+DV++ RS+ AG+ L GQ V + Sbjct: 17 GKVKWYDAEKGFGFL----SQEDGEDVYV-RSSALPAGVEALKSGQRVEF 61 >gi|195173115|ref|XP_002027340.1| GL15684 [Drosophila persimilis] gi|198465413|ref|XP_002134972.1| GA23502 [Drosophila pseudoobscura pseudoobscura] gi|194113183|gb|EDW35226.1| GL15684 [Drosophila persimilis] gi|198150149|gb|EDY73599.1| GA23502 [Drosophila pseudoobscura pseudoobscura] Length = 335 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G++V +D V Sbjct: 51 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 104 >gi|167468427|ref|ZP_02333131.1| major cold shock protein Cspa1 [Yersinia pestis FV-1] Length = 66 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 6/66 (9%) Query: 8 KWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 KW++ KG+GFITP +GS DVF+H SA+ S L EGQ V + ++N A G + Sbjct: 6 KWFDVCKGFGFITPADGSL----DVFVHFSAIQSNDFKTLDEGQNVEFS-IENGAKGPAA 60 Query: 67 AENLKL 72 + L Sbjct: 61 VNVIAL 66 >gi|152998000|ref|YP_001342835.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150838924|gb|ABR72900.1| putative cold-shock DNA-binding domain protein [Marinomonas sp. MWYL1] Length = 85 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N KG GFI E + DVF+H ++ G +L +GQLV++ Sbjct: 6 GKVKWFNDAKGVGFIKREEDS----DVFVHYKSIVCDGHKSLRKGQLVSF 51 >gi|261252479|ref|ZP_05945052.1| cold shock protein CspD [Vibrio orientalis CIP 102891] gi|260935870|gb|EEX91859.1| cold shock protein CspD [Vibrio orientalis CIP 102891] Length = 73 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI EG E G DVF H S + G L GQ V ++ Sbjct: 4 GTVKWFNNAKGFGFICSEG--EDG-DVFAHYSTIKMDGYRTLKAGQQVNFE 51 >gi|116627692|ref|YP_820311.1| cold shock protein A [Streptococcus thermophilus LMD-9] gi|116100969|gb|ABJ66115.1| cold-shock DNA-binding protein family [Streptococcus thermophilus LMD-9] gi|312278224|gb|ADQ62881.1| Cold shock-like protein cspA [Streptococcus thermophilus ND03] Length = 66 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G+I W+N DKGYGFI + DVF + ++ EGQ VT+D ++ + Sbjct: 1 MNKGTINWFNADKGYGFIMADDMQ----DVFAYLISIQGNDFKKYDEGQKVTFD-IKMTS 55 Query: 62 NGKYSA 67 G+Y + Sbjct: 56 RGRYDS 61 >gi|91229059|ref|ZP_01262885.1| cold shock-like protein CspD [Vibrio alginolyticus 12G01] gi|262394729|ref|YP_003286583.1| cold shock protein CspD [Vibrio sp. Ex25] gi|269967652|ref|ZP_06181702.1| cold shock-like protein CspD [Vibrio alginolyticus 40B] gi|91187452|gb|EAS73792.1| cold shock-like protein CspD [Vibrio alginolyticus 12G01] gi|262338323|gb|ACY52118.1| cold shock protein CspD [Vibrio sp. Ex25] gi|269827739|gb|EEZ82023.1| cold shock-like protein CspD [Vibrio alginolyticus 40B] Length = 72 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI S E D+F H S + G L GQ V+Y+ Sbjct: 4 GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 51 >gi|119870591|ref|YP_940543.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. KMS] gi|126437423|ref|YP_001073114.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. JLS] gi|119696680|gb|ABL93753.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS] gi|126237223|gb|ABO00624.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS] Length = 136 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF+ S E G+DV++ RS+ AG+ L GQ V + A G+ Sbjct: 4 GRVKWYDAEKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQRVEFGV----AAGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|76364244|sp|P0C0F0|CSPA_STRPY RecName: Full=Major cold shock protein gi|1402783|gb|AAC80258.1| major cold-shock protein [Streptococcus pyogenes] Length = 45 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 4/43 (9%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +KG+GFI STE+G DVF H SA+ + G L EGQ V +D Sbjct: 1 EKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVAFD 39 >gi|3892588|emb|CAA76696.1| cold shock protein C [Lactococcus lactis subsp. cremoris MG1363] Length = 66 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G I W+N DKGYGFI + DVF + ++ EGQ VT+D ++ + Sbjct: 1 MNKGKINWFNADKGYGFIMADDMQ----DVFAYLLSIQGNDFKKYDEGQKVTFD-IKMTS 55 Query: 62 NGKYSA 67 G+Y++ Sbjct: 56 RGRYAS 61 >gi|319405712|emb|CBI79335.1| cold shock protein [Bartonella sp. AR 15-3] Length = 191 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +KG+GF++ TE D+F+H + GL L GQ+V + Sbjct: 117 LERAIVKWFNREKGFGFLSRGQGTE---DIFIHMEILRRFGLAELRSGQVVLVRF 168 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGFI P+ D+ LH + + G EG V Q + K Sbjct: 28 GVIKWFDGSKGYGFIIPD--FPGLPDILLHVTVMRRDGFQTALEGAKVICVVKQTERGLK 85 >gi|269960957|ref|ZP_06175326.1| cold shock-like protein CspD [Vibrio harveyi 1DA3] gi|269834176|gb|EEZ88266.1| cold shock-like protein CspD [Vibrio harveyi 1DA3] Length = 72 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI S E D+F H S + G L GQ V+Y+ Sbjct: 4 GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 51 >gi|329123451|ref|ZP_08252015.1| cold shock domain protein CspD [Haemophilus aegyptius ATCC 11116] gi|327471033|gb|EGF16488.1| cold shock domain protein CspD [Haemophilus aegyptius ATCC 11116] Length = 72 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI+ EG D+F H S + G +L GQ V ++ + D G Sbjct: 4 GIVKWFNNAKGFGFISAEGVDA---DIFAHYSVIEMDGYRSLKVGQKVQFEVLHGD-KGS 59 Query: 65 YSAENLKLVP 74 ++ K++P Sbjct: 60 HAT---KIIP 66 >gi|165976142|ref|YP_001651735.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150037|ref|YP_001968562.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251483|ref|ZP_07337659.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252356|ref|ZP_07338522.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245585|ref|ZP_07527671.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247704|ref|ZP_07529743.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249938|ref|ZP_07531910.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252281|ref|ZP_07534178.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254540|ref|ZP_07536375.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256748|ref|ZP_07538527.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258995|ref|ZP_07540726.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261191|ref|ZP_07542866.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263370|ref|ZP_07544986.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876243|gb|ABY69291.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915168|gb|ACE61420.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648815|gb|EFL79005.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649715|gb|EFL79895.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853287|gb|EFM85506.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855807|gb|EFM87971.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857998|gb|EFM90082.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860203|gb|EFM92219.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862523|gb|EFM94482.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864796|gb|EFM96700.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867019|gb|EFM98876.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868922|gb|EFN00724.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871248|gb|EFN02976.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 68 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT + D+F H S + S G +L GQ V ++ + + Sbjct: 4 GIVKWFNSAKGFGFITSDNVE---GDIFAHFSEIQSEGYRSLKVGQKVQFELINGERGA- 59 Query: 65 YSAENLKLVP 74 SA + LV Sbjct: 60 -SAAKISLVE 68 >gi|153835791|ref|ZP_01988458.1| cold shock domain protein CspD [Vibrio harveyi HY01] gi|148867479|gb|EDL66854.1| cold shock domain protein CspD [Vibrio harveyi HY01] Length = 72 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI S E D+F H S + G L GQ V+Y+ Sbjct: 4 GTVKWFNNAKGFGFIC---SDEEEGDIFAHYSTIQMDGYRTLKAGQQVSYE 51 >gi|227505644|ref|ZP_03935693.1| cold shock protein [Corynebacterium striatum ATCC 6940] gi|227197797|gb|EEI77845.1| cold shock protein [Corynebacterium striatum ATCC 6940] Length = 67 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++K++N +KGYGFI E + D+F+H S + G L E Q V+++ + Sbjct: 3 QGTVKFFNAEKGYGFIEME---DGSGDIFVHYSEIQGNGFRTLEENQKVSFEVAE 54 >gi|83645150|ref|YP_433585.1| cold shock protein [Hahella chejuensis KCTC 2396] gi|83633193|gb|ABC29160.1| Cold shock protein [Hahella chejuensis KCTC 2396] Length = 116 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Query: 4 RGSIKWYNPDKGYGFITP-EGSTE-SGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G +KW+N KGYGFI EG+ + +D+F+H S++ G L GQ V +D Sbjct: 3 QGKVKWFNNAKGYGFIIADEGNGDLCKEDLFVHFSSIQMEGYKTLKAGQAVNFD 56 >gi|297193662|ref|ZP_06911060.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151865|gb|EFH31383.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] Length = 127 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V +G+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPSGVEALKPGQRVEFGVV 51 >gi|261493105|ref|ZP_05989643.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494856|ref|ZP_05991333.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309480|gb|EEY10706.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311240|gb|EEY12405.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 72 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFIT S D+F H S + + G +L GQ V ++ VQ + Sbjct: 4 GIVKWFNNVKGFGFIT---SDVCEGDIFAHFSEIQAEGYRSLKVGQKVQFELVQGERGA- 59 Query: 65 YSAENLKLVPKSS 77 SA N+ + + + Sbjct: 60 -SASNITPISEKT 71 >gi|119946476|ref|YP_944156.1| hypothetical protein Ping_2851 [Psychromonas ingrahamii 37] gi|119865080|gb|ABM04557.1| hypothetical protein DUF1294 [Psychromonas ingrahamii 37] Length = 207 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G + +N DKG+GF+ P G G+ F+H A S L G ++ Y+ V+ D Sbjct: 1 MKLQGKVTNWNDDKGFGFVDPNG---GGNRAFIHIKAFTSGSL-RPVNGDIIIYELVR-D 55 Query: 61 ANGKYSAENLKLVPKSSN 78 N +Y A+ +K + N Sbjct: 56 QNNRYQADKIKFAGDNKN 73 >gi|320095150|ref|ZP_08026858.1| cold shock domain protein CspD [Actinomyces sp. oral taxon 178 str. F0338] gi|319977932|gb|EFW09567.1| cold shock domain protein CspD [Actinomyces sp. oral taxon 178 str. F0338] Length = 69 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI P+ T DVF+H S+ V +G L EG V Y V+ G Sbjct: 4 GHVKWFNDAKGFGFIIPDDQT---GDVFVHFSSIVGQSGRRTLQEGDKVDYVAVEG-PRG 59 Query: 64 KYSAENLKLV 73 ++ E ++V Sbjct: 60 LHAEEVSRVV 69 >gi|169627971|ref|YP_001701620.1| cold shock-like protein B CspB [Mycobacterium abscessus ATCC 19977] gi|169239938|emb|CAM60966.1| Probable cold shock-like protein B CspB [Mycobacterium abscessus] Length = 137 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF+ S E G+DV++ RS+ AG+ L GQ V + A G+ Sbjct: 4 GKVKWYDAEKGFGFL----SQEDGEDVYV-RSSALPAGVEGLKAGQKVEFGM----AAGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|163791084|ref|ZP_02185504.1| cold-shock protein [Carnobacterium sp. AT7] gi|159873640|gb|EDP67724.1| cold-shock protein [Carnobacterium sp. AT7] Length = 68 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 5/58 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQ 58 + G++KW++ +KGYGFI +D+F+H + + + G +LT+GQLV+++ ++ Sbjct: 1 MENGTVKWFSNEKGYGFI----EYNETEDIFVHFTGIVNEDGFKSLTDGQLVSFEILE 54 >gi|257057363|ref|YP_003135195.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] gi|256587235|gb|ACU98368.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] Length = 128 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KWY+ DKG+GF+T +G G DV++ +SA+ G+ L GQ + + Sbjct: 4 GKVKWYDADKGFGFVTEDG----GRDVYVRKSALPQ-GVETLKAGQRLEF 48 >gi|149898790|gb|ABR27857.1| predicted RNA-binding protein [Triatoma infestans] Length = 300 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++G+DVF+H+SA+ + ++ +G+ V +D V Sbjct: 57 GTVKWFNVKSGYGFIN---RKDTGEDVFVHQSAIIKNNPKKAVRSVGDGETVEFDVV 110 >gi|3121931|sp|Q53984|CSPA_STRDY RecName: Full=Major cold shock protein gi|1402775|gb|AAC80257.1| major cold-shock protein [Streptococcus dysgalactiae] Length = 45 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 4/43 (9%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +KG+GFI STE+G DVF H SA+ + G L EGQ V +D Sbjct: 1 EKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVEFD 39 >gi|110680380|ref|YP_683387.1| cold shock protein [Roseobacter denitrificans OCh 114] gi|109456496|gb|ABG32701.1| cold shock protein [Roseobacter denitrificans OCh 114] Length = 178 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GF+ + G D+ LH + + + G ++ +G V + VQ G Sbjct: 13 GVVKWFDPVKGFGFVVADA---GGPDILLHVNVLRNFGQSSVADGARVELE-VQRTERGV 68 Query: 65 YSAENLKLVPKSSN 78 + + L L+P S+ Sbjct: 69 QATQVLSLLPPESD 82 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G DD+FLH + +GL +L G+ + ++ G + Sbjct: 108 VKWFDKGKGFGFANVFGRR---DDIFLHMEVLRRSGLSDLAPGEALALRVIEG-KRGHMA 163 Query: 67 AE 68 AE Sbjct: 164 AE 165 >gi|302386647|ref|YP_003822469.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] gi|302197275|gb|ADL04846.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] Length = 69 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 6/60 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDANG 63 G +KW++ +KGYGF+ ST G DVF+H S V +L EG+ V +D V+ D G Sbjct: 6 GVVKWFDNEKGYGFL----STSEGQDVFVHHSQVKEKTHNKDLHEGESVNFD-VRKDEKG 60 >gi|218680675|ref|ZP_03528572.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894] Length = 192 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T TE D+F+H + GL L GQ+V + + Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF-GDGE 172 Query: 62 NGKYSAENLKLVPKSSN 78 G +AE VP ++ Sbjct: 173 KGLMAAEIHPDVPSPAS 189 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G +KW++ KG+GFI P+ + DV LH + + G + EG + Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEGTRIV 73 >gi|1402751|gb|AAC80242.1| major cold-shock protein [Enterococcus faecalis] Length = 45 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 4/48 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +KG+GFI S E G DVF+H SA+ G L EGQ VT+D +D Sbjct: 1 EKGFGFI----SREDGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSD 44 >gi|255263765|ref|ZP_05343107.1| cold shock DNA-binding domain protein [Thalassiobium sp. R2A62] gi|255106100|gb|EET48774.1| cold shock DNA-binding domain protein [Thalassiobium sp. R2A62] Length = 166 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++P KG+GF+ + + G D+ LH + + + G ++ +G + + + G Sbjct: 2 RGLVKWFDPSKGFGFVVAD---DGGPDILLHANVLRNFGQSSVADGSAIELSVIDTE-RG 57 Query: 64 KYSAENLKLVP 74 +AE + + P Sbjct: 58 IQAAEIITITP 68 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G + DD+F+H + +GL +L G+ + V G+ + Sbjct: 98 VKWFDKSKGFGFANVFGVS---DDIFIHVEVLRRSGLADLQYGEAIGVRVVDG-KRGRMA 153 Query: 67 AE 68 A+ Sbjct: 154 AQ 155 >gi|319951935|ref|YP_004163202.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] gi|319420595|gb|ADV47704.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] Length = 63 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 7/57 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +++G++K++N KG+GFIT EGS+E D F+H S + + EG +V ++ Q Sbjct: 1 MNKGTVKFFNDSKGFGFITEEGSSE---DHFVHISGLVD----EIREGDVVEFELQQ 50 >gi|317491464|ref|ZP_07949900.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921011|gb|EFV42334.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 69 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KWY+ +G+G I+P + G+D++++RS +A++ LTEGQ V + Sbjct: 3 LKMGLVKWYSQSEGFGIISP---LDGGNDIYVNRSGIANSRKKLLTEGQRVEF 52 >gi|190891571|ref|YP_001978113.1| cold shock protein [Rhizobium etli CIAT 652] gi|190696850|gb|ACE90935.1| cold shock protein [Rhizobium etli CIAT 652] Length = 192 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T TE D+F+H + GL L GQ+V + Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF 168 Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 G +KW++ KG+GFI P+ + DV LH + + G + EG Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEG 69 >gi|24663131|ref|NP_524033.2| ypsilon schachtel [Drosophila melanogaster] gi|16769538|gb|AAL28988.1| LD37574p [Drosophila melanogaster] gi|23096153|gb|AAF49961.3| ypsilon schachtel [Drosophila melanogaster] Length = 352 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G++V +D V Sbjct: 64 GTVKWFNVKSGYGFIN---RNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 117 >gi|254496824|ref|ZP_05109675.1| cold shock domain-contain protein CspA [Legionella drancourtii LLAP12] gi|254353951|gb|EET12635.1| cold shock domain-contain protein CspA [Legionella drancourtii LLAP12] Length = 73 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N KG+GFI + GDD+F+H + G L E VT+ Sbjct: 7 GHVKWFNEKKGFGFII----NQQGDDIFVHYKDIQGVGFKTLHENDPVTF 52 >gi|1402741|gb|AAC80234.1| major cold-shock protein [Bacillus subtilis] Length = 45 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 EKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQSVSFEIVEGN 44 >gi|271970081|ref|YP_003344277.1| cold-shock DNA-binding domain-containing protein [Streptosporangium roseum DSM 43021] gi|270513256|gb|ACZ91534.1| putative cold-shock DNA-binding domain protein [Streptosporangium roseum DSM 43021] Length = 132 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KWY+ DKG+GF+T + G +VF+H SA+ G+ +L GQ V + Sbjct: 4 GKVKWYDADKGFGFLT----RDDGGEVFVHSSAL-PGGVDSLKPGQKVEF 48 >gi|241204473|ref|YP_002975569.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858363|gb|ACS56030.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 192 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T TE D+F+H + GL L GQ+V + + Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF-GDGE 172 Query: 62 NGKYSAENLKLVPKSSN 78 G +AE VP ++ Sbjct: 173 KGLMAAEIHPDVPSPAS 189 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G +KW++ KG+GFI P+ + DV LH + + G + EG + Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEGTRIV 73 >gi|291457452|ref|ZP_06596842.1| cold-shock domain protein [Bifidobacterium breve DSM 20213] gi|291381287|gb|EFE88805.1| cold-shock domain protein [Bifidobacterium breve DSM 20213] Length = 129 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 7/74 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G ++W++ KGYGFIT +E G DVFL A+ + G+ L +G V Y V D Sbjct: 4 GRVRWFDAAKGYGFIT----SEEGKDVFLPAQALPT-GVNTLRKGAKVEYSVV--DGRRG 56 Query: 65 YSAENLKLVPKSSN 78 A ++KL+ S + Sbjct: 57 PQAMDVKLIASSPS 70 >gi|195428579|ref|XP_002062350.1| GK16710 [Drosophila willistoni] gi|194158435|gb|EDW73336.1| GK16710 [Drosophila willistoni] Length = 344 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G++V +D V Sbjct: 49 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 102 >gi|195589720|ref|XP_002084597.1| GD12750 [Drosophila simulans] gi|194196606|gb|EDX10182.1| GD12750 [Drosophila simulans] Length = 352 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G++V +D V Sbjct: 64 GTVKWFNVKSGYGFIN---RNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 117 >gi|209549149|ref|YP_002281066.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534905|gb|ACI54840.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 192 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T TE D+F+H + GL L GQ+V + Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF 168 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G +KW++ KG+GFI P+ + DV LH + + G + EG + Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEGTRIV 73 >gi|116251862|ref|YP_767700.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256510|emb|CAK07594.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] Length = 192 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T TE D+F+H + GL L GQ+V + + Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF-GDGE 172 Query: 62 NGKYSAENLKLVPKSSN 78 G +AE VP ++ Sbjct: 173 KGLMAAEIHPDVPSPAS 189 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G +KW++ KG+GFI P+ + DV LH + + G + EG + Sbjct: 28 GVVKWFDVAKGFGFIVPDNGLQ---DVLLHVTCLRRDGYQTILEGTRIV 73 >gi|256374634|ref|YP_003098294.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] gi|255918937|gb|ACU34448.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] Length = 131 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V G +KWY+ +KG+GF+T +G G+DV++ +SA+ G+ L GQ + + Sbjct: 4 VPTGKVKWYDSEKGFGFVTQDG----GEDVYVRKSALPE-GVDALKAGQRIEF 51 >gi|195493731|ref|XP_002094541.1| GE20150 [Drosophila yakuba] gi|194180642|gb|EDW94253.1| GE20150 [Drosophila yakuba] Length = 353 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G++V +D V Sbjct: 65 GTVKWFNVKSGYGFIN---RNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 118 >gi|86357508|ref|YP_469400.1| cold shock protein [Rhizobium etli CFN 42] gi|86281610|gb|ABC90673.1| cold shock protein [Rhizobium etli CFN 42] Length = 192 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T TE D+F+H + GL L GQ+V + + Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF-GDGE 172 Query: 62 NGKYSAENLKLVPKSSN 78 G +AE VP ++ Sbjct: 173 KGLMAAEIHPDVPSPAS 189 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFI P+ + DV LH + + G + EG + VQ G Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEGTRIVA-LVQRRERGY 83 Query: 65 YSAENLKL 72 + + L + Sbjct: 84 QAFKILSM 91 >gi|113460999|ref|YP_719066.1| cold-shock DNA-binding protein family protein [Haemophilus somnus 129PT] gi|170717567|ref|YP_001784653.1| cold-shock DNA-binding domain-containing protein [Haemophilus somnus 2336] gi|112823042|gb|ABI25131.1| cold-shock DNA-binding protein family [Haemophilus somnus 129PT] gi|168825696|gb|ACA31067.1| putative cold-shock DNA-binding domain protein [Haemophilus somnus 2336] Length = 69 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GF+ S ES D DVF H S + G +L GQ V + V D G Sbjct: 4 GIVKWFNNAKGFGFL----SVESSDVDVFAHYSVIEMEGYRSLKAGQKVQCEVVHGD-KG 58 Query: 64 KYSAENLKLV 73 ++ + + +V Sbjct: 59 SHATKIIPMV 68 >gi|222085830|ref|YP_002544361.1| cold shock protein [Agrobacterium radiobacter K84] gi|221723278|gb|ACM26434.1| cold shock protein [Agrobacterium radiobacter K84] Length = 192 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T E +D+F+H + GL L GQ+V + Sbjct: 117 LERALVKWFNRTKGFGFLT---RGEGTEDIFVHMETLRRFGLAELRPGQVVLVRF 168 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFI P+ + DV LH + + G + EG + +Q G Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEGTRIVA-LIQRRERGY 83 Query: 65 YSAENLKL 72 + + L + Sbjct: 84 QAFKILSM 91 >gi|218462851|ref|ZP_03502942.1| cold shock protein [Rhizobium etli Kim 5] gi|327190806|gb|EGE57874.1| cold shock protein [Rhizobium etli CNPAF512] Length = 192 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T TE D+F+H + GL L GQ+V + Sbjct: 117 LERALVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLVRF 168 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 G +KW++ KG+GFI P+ + DV LH + + G + EG Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEG 69 >gi|254477246|ref|ZP_05090632.1| cold shock DNA-binding domain protein [Ruegeria sp. R11] gi|214031489|gb|EEB72324.1| cold shock DNA-binding domain protein [Ruegeria sp. R11] Length = 171 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 10/78 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG---QLVTYDYVQND 60 RG +KW++P KG+GF+ S E G D+ LH + + + G ++ +G +LVT+ Sbjct: 5 RGLVKWFDPTKGFGFVV---SDEGGPDILLHVNVLRNFGQSSIADGAQVELVTH----RT 57 Query: 61 ANGKYSAENLKLVPKSSN 78 G + E + + P + Sbjct: 58 ERGVQAVEVISITPPERD 75 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G E DVFLH + +GL L G+ + ++ G+ + Sbjct: 101 VKWFDKGKGFGFANVFGRPE---DVFLHVEVLRQSGLSELQPGEALGMRVIEGK-RGRMA 156 Query: 67 AENL 70 E L Sbjct: 157 VEVL 160 >gi|297158325|gb|ADI08037.1| cold shock protein [Streptomyces bingchenggensis BCW-1] Length = 127 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V G+ +L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPEGVDSLKPGQRVEFGVV 51 >gi|294814134|ref|ZP_06772777.1| Cold shock protein B [Streptomyces clavuligerus ATCC 27064] gi|294326733|gb|EFG08376.1| Cold shock protein B [Streptomyces clavuligerus ATCC 27064] Length = 132 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 V G +KW+N +KG+GF+ S + G DVF+H S+V G+ +L GQ V + V Sbjct: 6 VPTGKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPDGVDSLKPGQRVEFGVV 56 >gi|145284600|gb|ABP52047.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 26 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 4/30 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+NPDKG+GFIT +E G DVF+H Sbjct: 1 GKVKWFNPDKGFGFIT----SEDGQDVFVH 26 >gi|71064869|ref|YP_263596.1| guanine-specific ribonuclease [Psychrobacter arcticus 273-4] gi|71037854|gb|AAZ18162.1| possible guanine-specific ribonuclease with a cold-shock DNA-binding domain [Psychrobacter arcticus 273-4] Length = 247 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G IK +N DKGYGFI + +E DVF H +V A ++EGQ V ++ +ND Sbjct: 1 MQSGKIKHWNSDKGYGFIDVDNQSE---DVFFHIKSVQMAQP--ISEGQRVYFNSERNDK 55 Query: 62 NGKYSAE 68 N + E Sbjct: 56 NQLRATE 62 >gi|328952681|ref|YP_004370015.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453005|gb|AEB08834.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans DSM 11109] Length = 67 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M +RG +K++N KG+GFI + G +VF+H S + S G L E + V ++ Sbjct: 1 MKYRGKVKFFNESKGWGFI----KQDDGPEVFVHYSNIQSKGFRTLKENEEVEFE 51 >gi|302544493|ref|ZP_07296835.1| cold-shock domain family protein [Streptomyces hygroscopicus ATCC 53653] gi|302462111|gb|EFL25204.1| cold-shock domain family protein [Streptomyces himastatinicus ATCC 53653] Length = 127 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V G+ +L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPEGVDSLKPGQRVEFGVV 51 >gi|148379732|ref|YP_001254273.1| cold shock protein [Clostridium botulinum A str. ATCC 3502] gi|153933933|ref|YP_001384029.1| cold shock protein [Clostridium botulinum A str. ATCC 19397] gi|153936177|ref|YP_001387571.1| cold shock protein [Clostridium botulinum A str. Hall] gi|148289216|emb|CAL83311.1| cold shock protein [Clostridium botulinum A str. ATCC 3502] gi|152929977|gb|ABS35477.1| cold shock protein [Clostridium botulinum A str. ATCC 19397] gi|152932091|gb|ABS37590.1| cold shock protein [Clostridium botulinum A str. Hall] Length = 69 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 5/60 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60 +H G++KW++ ++GYGFI + +G DV++H + L +L EG+ V +D V+ + Sbjct: 3 MHTGTVKWFDNERGYGFI----AGNNGKDVYVHSMQIKEKTLNKDLHEGEEVLFDIVEKE 58 >gi|238762682|ref|ZP_04623651.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638] gi|238698987|gb|EEP91735.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638] Length = 80 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 17 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQ 67 >gi|270156922|ref|ZP_06185579.1| cold shock protein [Legionella longbeachae D-4968] gi|289164651|ref|YP_003454789.1| cold shock protein; Qin prophage [Legionella longbeachae NSW150] gi|269988947|gb|EEZ95201.1| cold shock protein [Legionella longbeachae D-4968] gi|288857824|emb|CBJ11670.1| cold shock protein; Qin prophage [Legionella longbeachae NSW150] Length = 71 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N KG+GFI E+GDD+F+H + G L E V++ Sbjct: 7 GHVKWFNEKKGFGFII----NENGDDIFVHYKDIQGVGFKTLHENDPVSF 52 >gi|159898821|ref|YP_001545068.1| cold-shock DNA-binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891860|gb|ABX04940.1| cold-shock DNA-binding domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 197 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 9/75 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ----ND 60 G++ W++P+K YGFIT T +G +F+HR A+ G L EG+ V++ V+ ++ Sbjct: 7 GTVAWFDPEKSYGFIT----THAGASLFVHRRALGD-GRRWLVEGEEVSFVVVRGMKGDE 61 Query: 61 ANGKYSAENLKLVPK 75 AN L P+ Sbjct: 62 ANDVLVTSALPPTPR 76 >gi|126662941|ref|ZP_01733939.1| cold shock protein [Flavobacteria bacterium BAL38] gi|126624599|gb|EAZ95289.1| cold shock protein [Flavobacteria bacterium BAL38] Length = 66 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 7/64 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K++N KGYGFIT + E+G D+F+H S + + +L EG V+Y+ + GK Sbjct: 4 GKVKFFNESKGYGFITDD---ETGKDIFVHASGMR---VESLNEGDAVSYEE-EEGRKGK 56 Query: 65 YSAE 68 +A+ Sbjct: 57 VAAQ 60 >gi|325921527|ref|ZP_08183380.1| cold shock protein [Xanthomonas gardneri ATCC 19865] gi|325547997|gb|EGD18998.1| cold shock protein [Xanthomonas gardneri ATCC 19865] Length = 197 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 7/68 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQN 59 M G++ +NPD+G+GFITP + GD+VF+H SA SA + G+L++++ ++ Sbjct: 4 MRTHGTLTRWNPDRGFGFITP---AQPGDEVFVHISAFPRSADAPRI--GELISFE-IEP 57 Query: 60 DANGKYSA 67 +G+ A Sbjct: 58 SKDGRQQA 65 >gi|261314020|ref|ZP_05953217.1| cold-shock family protein [Brucella pinnipedialis M163/99/10] gi|261303046|gb|EEY06543.1| cold-shock family protein [Brucella pinnipedialis M163/99/10] Length = 150 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + Sbjct: 76 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 127 >gi|74007477|ref|XP_549034.2| PREDICTED: similar to cold shock domain protein A [Canis familiaris] Length = 315 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQN 59 RGS+KW+N GYGFI+ ++ +DVF+H++A+ ++ +G+ V +D VQ Sbjct: 26 RGSVKWFNVKNGYGFIS---RHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQG 82 Query: 60 D 60 + Sbjct: 83 E 83 >gi|330885139|gb|EGH19288.1| cold shock protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 36 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 4/40 (10%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 +N +KG+GFITP+ SGDD+F+H A+ S G +L EG Sbjct: 1 FNDEKGFGFITPQ----SGDDLFVHFKAIQSDGFKSLKEG 36 >gi|111226076|ref|YP_716870.1| CspB [Frankia alni ACN14a] gi|111153608|emb|CAJ65366.1| CspB [Frankia alni ACN14a] Length = 131 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ DKG+GF+ S + G DVF+H++A+ AG+ L G V + Sbjct: 4 GKVKWFDVDKGFGFL----SRDDGGDVFVHKAAL-PAGVERLKPGDRVEF 48 >gi|145594602|ref|YP_001158899.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440] gi|145303939|gb|ABP54521.1| cold-shock DNA-binding protein family [Salinispora tropica CNB-440] Length = 137 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 18/84 (21%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH-------RSAVASAGLFNLTEGQLVTY 54 + +G+I ++ +GYGFI P G GDDVF+H R AVA+ G V+Y Sbjct: 1 MEKGTIVRFDDVRGYGFIAPFG---GGDDVFVHANDFGDQRHAVAA--------GMRVSY 49 Query: 55 DYVQNDANGKYSAENLKLVPKSSN 78 + VQ++ K ++ L+ P + N Sbjct: 50 EVVQSERGLKVASVVLETAPAAPN 73 >gi|94264655|ref|ZP_01288437.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1] gi|93454886|gb|EAT05130.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1] Length = 70 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW+N KG+GFI E + DVF+H + G +L +GQ V + V+ Sbjct: 7 GKVKWFNAPKGFGFIERENDS----DVFVHYRGIKGDGYRSLQDGQEVIFSVVE 56 >gi|163731974|ref|ZP_02139420.1| cold shock protein [Roseobacter litoralis Och 149] gi|161394272|gb|EDQ18595.1| cold shock protein [Roseobacter litoralis Och 149] Length = 178 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GF+ + G D+ LH + + + G ++ +G V + VQ G Sbjct: 13 GVVKWFDPVKGFGFVVADA---GGPDILLHVNVLRNFGQSSVADGARVELE-VQRTDRGV 68 Query: 65 YSAENLKLVPKSSN 78 + + L L+P S+ Sbjct: 69 QATQVLSLLPPDSD 82 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G DD+FLH + +GL +L G+ + ++ G + Sbjct: 108 VKWFDKGKGFGFANVFGRR---DDIFLHMEVLRRSGLSDLAPGEALALRVIEG-KRGHMA 163 Query: 67 AE 68 AE Sbjct: 164 AE 165 >gi|52841437|ref|YP_095236.1| cold shock domain-contain protein CspA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628548|gb|AAU27289.1| cold shock domain family protein CspA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 79 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI + G+D+F+H + G L E VT++ Sbjct: 9 GHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFE 55 >gi|254706561|ref|ZP_05168389.1| cold-shock family protein [Brucella pinnipedialis M163/99/10] Length = 158 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + Sbjct: 84 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 135 >gi|145284598|gb|ABP52046.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 26 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 4/30 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+NPDKG+GFIT +E G DVF+H Sbjct: 1 GPVKWFNPDKGFGFIT----SEDGQDVFVH 26 >gi|259089373|ref|NP_001158512.1| Y-box binding protein [Oncorhynchus mykiss] gi|219665297|gb|ACL31579.1| Y-box binding protein [Oncorhynchus mykiss] Length = 301 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ DDVF+H++A+ L ++ +G++V +D V+ + Sbjct: 42 GTVKWFNVRNGYGFIN---RNDTKDDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 98 >gi|114706186|ref|ZP_01439089.1| cold shock protein [Fulvimarina pelagi HTCC2506] gi|114539032|gb|EAU42153.1| cold shock protein [Fulvimarina pelagi HTCC2506] Length = 191 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 ++KW+N KGYGF+T + E+ +D+F+H + G+ L GQ V Y GK Sbjct: 121 ATVKWFNRTKGYGFLT---TGENDEDIFIHMETLRRFGMTELRLGQEVKVRY-GIGRKGK 176 Query: 65 YSAE 68 +AE Sbjct: 177 MAAE 180 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G IKW++ KG+GFI P+ + DV +H + + G EG V + VQ G Sbjct: 29 GHIKWFDVAKGFGFIVPD---DESADVLIHVTCLRRDGYATALEGARVVCE-VQRSERG 83 >gi|54294149|ref|YP_126564.1| hypothetical protein lpl1213 [Legionella pneumophila str. Lens] gi|53753981|emb|CAH15452.1| hypothetical protein lpl1213 [Legionella pneumophila str. Lens] Length = 77 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI + G+D+F+H + G L E VT++ Sbjct: 7 GHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFE 53 >gi|302865005|ref|YP_003833642.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029] gi|302567864|gb|ADL44066.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC 27029] Length = 123 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KWY+ KGYGF+T ++ G DVFL + A+ AG+ +L GQ V + V + + Sbjct: 1 MKWYDAAKGYGFVT----SDEGGDVFLPKGAL-PAGVADLKGGQRVDFSVVDSRRGAQAM 55 Query: 67 AENLKLVPKS 76 L P S Sbjct: 56 GVKLLEAPPS 65 >gi|74007475|ref|XP_549033.2| PREDICTED: similar to cold shock domain protein A [Canis familiaris] Length = 383 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQN 59 RGS+KW+N GYGFI+ + E DVF+H++A+ ++ +G+ V +D VQ Sbjct: 70 RGSVKWFNVKNGYGFISRHDTQE---DVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQG 126 Query: 60 D 60 + Sbjct: 127 E 127 >gi|61680881|pdb|2BH8|A Chain A, Combinatorial Protein 1b11 gi|61680882|pdb|2BH8|B Chain B, Combinatorial Protein 1b11 Length = 101 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 3/37 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41 G +KW+N DKG+GFITP+ ++ DVF+H SA +S Sbjct: 19 GIVKWFNADKGFGFITPDDGSK---DVFVHFSAGSSG 52 >gi|315501502|ref|YP_004080389.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|315408121|gb|ADU06238.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] Length = 123 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KWY+ KGYGF+T ++ G DVFL + A+ AG+ +L GQ V + V + + Sbjct: 1 MKWYDAAKGYGFVT----SDEGGDVFLPKGAL-PAGVADLKGGQRVDFSVVDSRRGAQAM 55 Query: 67 AENLKLVPKS 76 L P S Sbjct: 56 GVKLLEAPPS 65 >gi|254393855|ref|ZP_05008963.1| cold shock protein B [Streptomyces clavuligerus ATCC 27064] gi|326442535|ref|ZP_08217269.1| putative cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|197707450|gb|EDY53262.1| cold shock protein B [Streptomyces clavuligerus ATCC 27064] Length = 127 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V G+ +L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPDGVDSLKPGQRVEFGVV 51 >gi|325286936|ref|YP_004262726.1| cold-shock DNA-binding domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322390|gb|ADY29855.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM 7489] Length = 63 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 7/51 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++K++N KG+GFITP+ + G DVF+H S + + EG V+YD Sbjct: 4 GTVKFFNDSKGFGFITPD---DGGKDVFVHISGLTH----EIAEGDKVSYD 47 >gi|86743101|ref|YP_483501.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3] gi|86569963|gb|ABD13772.1| cold-shock DNA-binding protein family [Frankia sp. CcI3] Length = 131 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ DKG+GF+ S + G DVF+H++A+ AG+ L G V + Sbjct: 4 GKVKWFDVDKGFGFL----SRDDGGDVFVHKAAL-PAGVDRLKPGDRVEF 48 >gi|54297162|ref|YP_123531.1| hypothetical protein lpp1207 [Legionella pneumophila str. Paris] gi|148358792|ref|YP_001249999.1| cold shock domain family transporter protein CspA [Legionella pneumophila str. Corby] gi|296106837|ref|YP_003618537.1| cold shock domain family protein CspA [Legionella pneumophila 2300/99 Alcoy] gi|53750947|emb|CAH12358.1| hypothetical protein lpp1207 [Legionella pneumophila str. Paris] gi|148280565|gb|ABQ54653.1| cold shock domain family protein CspA [Legionella pneumophila str. Corby] gi|295648738|gb|ADG24585.1| cold shock domain family protein CspA [Legionella pneumophila 2300/99 Alcoy] gi|307609962|emb|CBW99490.1| hypothetical protein LPW_12631 [Legionella pneumophila 130b] Length = 77 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI + G+D+F+H + G L E VT++ Sbjct: 7 GHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFE 53 >gi|325918449|ref|ZP_08180573.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] gi|325535344|gb|EGD07216.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] Length = 57 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 4/48 (8%) Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 N KG+GFI S E+G+DVF+H A+ G +L EGQ V++ VQ Sbjct: 1 NDAKGFGFI----SRENGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQ 44 >gi|195327031|ref|XP_002030225.1| GM24682 [Drosophila sechellia] gi|194119168|gb|EDW41211.1| GM24682 [Drosophila sechellia] Length = 1378 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI + E DVF+H+SA+A + ++ +G++V +D V Sbjct: 64 GTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 117 >gi|238784838|ref|ZP_04628839.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970] gi|238714254|gb|EEQ06265.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970] Length = 70 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 7 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQ 57 >gi|255975690|ref|ZP_05426276.1| cold shock protein [Enterococcus faecalis T2] gi|307277908|ref|ZP_07558992.1| major cold shock protein CspA [Enterococcus faecalis TX0860] gi|255968562|gb|EET99184.1| cold shock protein [Enterococcus faecalis T2] gi|306505305|gb|EFM74491.1| major cold shock protein CspA [Enterococcus faecalis TX0860] Length = 68 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW++ KGYGFI D++F+H +A+ G +L E Q V ++ ++ Sbjct: 1 MQKGIVKWFDNRKGYGFIV----YNEEDEIFVHFTAIEGDGFKSLDENQFVEFEIME 53 >gi|84515605|ref|ZP_01002967.1| cold shock DNA-binding domain protein [Loktanella vestfoldensis SKA53] gi|84510888|gb|EAQ07343.1| cold shock DNA-binding domain protein [Loktanella vestfoldensis SKA53] Length = 175 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KG+GF+ E G D+ LH + + + G ++ +G + VQ+ G Sbjct: 13 QGQVKWFDPTKGFGFVIAE---LGGPDILLHANVLRNFGQGSVVDGSRIDL-MVQDTQRG 68 Query: 64 KYSAENLKLVPKSSN 78 + E + + P ++ Sbjct: 69 LQAVEVISITPPHAD 83 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +KW++ KG+GF GS+ DDVF+H + +GL +L G+ + V + Sbjct: 104 IEPARVKWFDKAKGFGFANVFGSS---DDVFIHIEVLRRSGLSDLQSGEAIGLRLVDGE 159 >gi|294884847|gb|ADF47434.1| cold shock domain-containing protein A [Dugesia japonica] Length = 190 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 8/63 (12%) Query: 1 MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYD 55 +VH+ G +KWYN KGYGFI + E DVF+H+SA++ +L E + V +D Sbjct: 11 LVHKVTGKVKWYNVKKGYGFIHRDDVDE---DVFVHQSAISRCQPGKQKSLGEDEDVLFD 67 Query: 56 YVQ 58 V+ Sbjct: 68 VVK 70 >gi|227832587|ref|YP_002834294.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975] gi|262182930|ref|ZP_06042351.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975] gi|227453603|gb|ACP32356.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975] Length = 126 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ DKG+GF++ G +DV++ R+ V G+ L +GQ + +D+ A G+ Sbjct: 4 GKVKWYDADKGFGFVSNPGD----EDVYVGRN-VLPKGVDELHQGQRIEFDF----AAGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 RGPQALRV 62 >gi|254293523|ref|YP_003059546.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] gi|254042054|gb|ACT58849.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] Length = 69 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+H G++K+YN ++G+G IT ++ DV SA+ G+ + E Q V ++ N Sbjct: 1 MIH-GTVKYYNSEQGFGLIT---RADNEKDVRFTFSALKKLGITGIKERQKVKFETETNP 56 Query: 61 ANGKYSAENLKLV 73 GK A L+LV Sbjct: 57 DTGKVIAVTLELV 69 >gi|158423560|ref|YP_001524852.1| DNA-binding cold-shock protein [Azorhizobium caulinodans ORS 571] gi|158330449|dbj|BAF87934.1| DNA-binding cold-shock protein [Azorhizobium caulinodans ORS 571] Length = 192 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G++KW++ KGYGFI P+ + G DV +H + + G EG + + V+ Sbjct: 31 GAVKWFDAAKGYGFIVPD---DGGPDVLVHVTCLRRDGFTTAMEGARIVCEAVRR 82 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 R ++KW+N +G+GF++ E D+F+H + GL L GQ V Y Sbjct: 120 ERATVKWFNRMRGFGFLS---KGEGTPDIFVHMETLRQQGLTELRPGQSVLVRY 170 >gi|300858014|ref|YP_003782997.1| cold shock-like protein B [Corynebacterium pseudotuberculosis FRC41] gi|300685468|gb|ADK28390.1| cold shock-like protein B [Corynebacterium pseudotuberculosis FRC41] gi|302205739|gb|ADL10081.1| cold shock protein B [Corynebacterium pseudotuberculosis C231] gi|302330294|gb|ADL20488.1| cold shock protein B [Corynebacterium pseudotuberculosis 1002] gi|308275975|gb|ADO25874.1| cold shock protein B [Corynebacterium pseudotuberculosis I19] Length = 130 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 5/52 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G ++WY+P+KGYGF++ G +D ++ ++ V AG+ L +GQ + +D+ Sbjct: 4 GRVRWYDPEKGYGFVSNPGD----EDCYVGKN-VLPAGVDKLEKGQRIEFDF 50 >gi|170017486|ref|YP_001728405.1| cold shock protein [Leuconostoc citreum KM20] gi|169804343|gb|ACA82961.1| Cold shock protein [Leuconostoc citreum KM20] Length = 74 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +K + ++GYG+ITP+ G+DVF+H + + G L +G+ V+Y VQ Sbjct: 4 GIVKIWQKERGYGYITPDAG---GEDVFVHFNGIDMPGFKALKQGEKVSYVLVQ 54 >gi|319442530|ref|ZP_07991686.1| putative cold shock protein [Corynebacterium variabile DSM 44702] Length = 129 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 7/68 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ DKG+GF++ G DDV + RSA+ G+ L GQ V YD V GK Sbjct: 4 GKVKWFDADKGFGFVSNPGY----DDVHVGRSALPE-GVTELVPGQRVEYD-VATGLRGK 57 Query: 65 YSAENLKL 72 + E L++ Sbjct: 58 -APEALRV 64 >gi|325106181|ref|YP_004275835.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM 12145] gi|324975029|gb|ADY54013.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM 12145] Length = 63 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KG+GFITP GDD+F+H S + + + E +V ++ V+N Sbjct: 1 MKEGKVKFFNETKGFGFITP---LNGGDDIFVHSSGLETE----IRENDVVVFE-VENGR 52 Query: 62 NGKYSAENLKL 72 G +A N++L Sbjct: 53 KG-LNAVNVRL 62 >gi|23502142|ref|NP_698269.1| cold-shock family protein [Brucella suis 1330] gi|161619217|ref|YP_001593104.1| cold shock-like protein cspG [Brucella canis ATCC 23365] gi|163843529|ref|YP_001627933.1| cold shock-like protein cspG [Brucella suis ATCC 23445] gi|254704543|ref|ZP_05166371.1| cold shock-like protein cspG [Brucella suis bv. 3 str. 686] gi|260566213|ref|ZP_05836683.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|261755227|ref|ZP_05998936.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|23348105|gb|AAN30184.1| cold-shock family protein [Brucella suis 1330] gi|161336028|gb|ABX62333.1| Cold shock-like protein cspG [Brucella canis ATCC 23365] gi|163674252|gb|ABY38363.1| Cold shock-like protein cspG [Brucella suis ATCC 23445] gi|260155731|gb|EEW90811.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|261744980|gb|EEY32906.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 3 str. 686] Length = 193 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169 >gi|23336360|ref|ZP_00121581.1| COG1278: Cold shock proteins [Bifidobacterium longum DJO10A] gi|23464635|ref|NP_695238.1| cold shock protein [Bifidobacterium longum NCC2705] gi|189438870|ref|YP_001953951.1| cold shock protein [Bifidobacterium longum DJO10A] gi|227546733|ref|ZP_03976782.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620709|ref|ZP_04663740.1| cold shock protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454603|ref|YP_003661746.1| putative cold-shock DNA-binding domain-containing protein [Bifidobacterium longum subsp. longum JDM301] gi|317481709|ref|ZP_07940741.1| cold-shock' DNA-binding domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689671|ref|YP_004209405.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F] gi|322691632|ref|YP_004221202.1| cold shock protein [Bifidobacterium longum subsp. longum JCM 1217] gi|23325192|gb|AAN23874.1| cold shock protein [Bifidobacterium longum NCC2705] gi|32700058|gb|AAP86682.1| cold shock protein B [Bifidobacterium longum subsp. infantis] gi|189427305|gb|ACD97453.1| Cold shock protein [Bifidobacterium longum DJO10A] gi|227212695|gb|EEI80576.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516285|gb|EEQ56152.1| cold shock protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516230|emb|CBK69846.1| cold-shock DNA-binding protein family [Bifidobacterium longum subsp. longum F8] gi|296184034|gb|ADH00916.1| putative cold-shock DNA-binding domain protein [Bifidobacterium longum subsp. longum JDM301] gi|316916823|gb|EFV38213.1| cold-shock' DNA-binding domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456488|dbj|BAJ67110.1| cold shock protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320461007|dbj|BAJ71627.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F] Length = 129 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 7/69 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G ++W++ KGYGFIT +E G DVFL A+ + G+ L +G V Y V D Sbjct: 4 GRVRWFDAAKGYGFIT----SEEGKDVFLPAQALPT-GVTTLRKGAKVEYSVV--DGRRG 56 Query: 65 YSAENLKLV 73 A +++L+ Sbjct: 57 PQAMDVRLI 65 >gi|254702002|ref|ZP_05163830.1| cold-shock family protein [Brucella suis bv. 5 str. 513] gi|261752569|ref|ZP_05996278.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261742322|gb|EEY30248.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 5 str. 513] Length = 193 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KGYGFI P+ + D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARIVCEVRHGD 81 >gi|301791962|ref|XP_002930949.1| PREDICTED: nuclease-sensitive element-binding protein 1-like, partial [Ailuropoda melanoleuca] Length = 416 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQN 59 RGS+KW+N GYGFI+ ++ +DVF+H+ A+ ++ +G+ V +D VQ Sbjct: 70 RGSVKWFNVKNGYGFIS---RHDTQEDVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQG 126 Query: 60 D 60 + Sbjct: 127 E 127 >gi|254464203|ref|ZP_05077614.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium Y4I] gi|206685111|gb|EDZ45593.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium Y4I] Length = 179 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KGYGF+ S E G D+ LH + + + G ++ +G + G Sbjct: 12 QGLVKWFDPAKGYGFVV---SDEGGPDILLHVNVLRNFGQSSVADGARIEI-VTHQTGRG 67 Query: 64 KYSAENLKLVPKSSN 78 + E L ++P + Sbjct: 68 VQAVEVLSIMPPERD 82 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G G+DVFLH + +GL +L G+ + + + G+ + Sbjct: 108 VKWFDKGKGFGFANVFGR---GEDVFLHVEVLRQSGLADLQPGEALAMRVI-DGKRGRMA 163 Query: 67 AENL----KLVPKSSN 78 E L L+P S++ Sbjct: 164 VEVLAWEAALMPGSAD 179 >gi|256061344|ref|ZP_05451488.1| cold-shock family protein [Brucella neotomae 5K33] gi|261325345|ref|ZP_05964542.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae 5K33] gi|261301325|gb|EEY04822.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae 5K33] Length = 193 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KGYGFI P+ + D+ LH +++ G EG V + D Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARVVCEVRHGD 81 >gi|254298844|ref|ZP_04966294.1| cold-shock domain family protein [Burkholderia pseudomallei 406e] gi|157809241|gb|EDO86411.1| cold-shock domain family protein [Burkholderia pseudomallei 406e] Length = 52 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G +KW+N KG+GFIT S G+D+F H S + G L E Q V+ Sbjct: 4 GIVKWFNDAKGFGFIT---SDNGGEDLFAHFSEIRMEGFKTLKENQRVS 49 >gi|62290174|ref|YP_221967.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|82700096|ref|YP_414670.1| cold shock DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189024409|ref|YP_001935177.1| Cold-shock DNA-binding domain protein [Brucella abortus S19] gi|237815683|ref|ZP_04594680.1| Cold shock-like protein cspG [Brucella abortus str. 2308 A] gi|254689477|ref|ZP_05152731.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 6 str. 870] gi|254697615|ref|ZP_05159443.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730506|ref|ZP_05189084.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 4 str. 292] gi|256257725|ref|ZP_05463261.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 9 str. C68] gi|260546718|ref|ZP_05822457.1| cold-shock DNA-binding domain-containing protein [Brucella abortus NCTC 8038] gi|260755001|ref|ZP_05867349.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260758217|ref|ZP_05870565.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260762044|ref|ZP_05874387.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884011|ref|ZP_05895625.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297248567|ref|ZP_06932285.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv. 5 str. B3196] gi|62196306|gb|AAX74606.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|82616197|emb|CAJ11240.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus 2308] gi|189019981|gb|ACD72703.1| Cold-shock DNA-binding domain protein [Brucella abortus S19] gi|237788981|gb|EEP63192.1| Cold shock-like protein cspG [Brucella abortus str. 2308 A] gi|260095768|gb|EEW79645.1| cold-shock DNA-binding domain-containing protein [Brucella abortus NCTC 8038] gi|260668535|gb|EEX55475.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672476|gb|EEX59297.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675109|gb|EEX61930.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260873539|gb|EEX80608.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297175736|gb|EFH35083.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv. 5 str. B3196] Length = 193 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KGYGFI P+ + D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARIVCEVRHGD 81 >gi|114798263|ref|YP_760667.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114738437|gb|ABI76562.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 175 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG--DDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KGYGFI E S+E+ DV LH S + G EG + D V+ + Sbjct: 23 GRIKWFDSAKGYGFIVAESSSEADMTGDVLLHISCLRDYGENYADEGAKIVCDAVRKE 80 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 ++KW+N +GYGF+ +G D+F+H A AG ++ G + Sbjct: 112 TLKWFNRTRGYGFVLRDGQE---TDIFVHAVAFRKAGYEDIEPGTRI 155 >gi|302383024|ref|YP_003818847.1| cold-shock DNA-binding domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302193652|gb|ADL01224.1| cold-shock DNA-binding domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 186 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%) Query: 5 GSIKWYNPDKGYGFITPE--GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G +KW++P KGYGFI P+ G T+ D+ LH S++ +G EG + D + Sbjct: 17 GRVKWFDPGKGYGFIVPDDPGQTDH-KDILLHISSLRDSGRDLAGEGATIECDCARR 72 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 ++KW+N KGYGF+ E T+ G D+F+H + GL +L G+ V + Sbjct: 123 TVKWFNRTKGYGFVVRE--TDPG-DIFVHIETLRRCGLDDLVPGETVAVRF 170 >gi|254693964|ref|ZP_05155792.1| Cold shock-like protein cspG [Brucella abortus bv. 3 str. Tulya] gi|261214256|ref|ZP_05928537.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260915863|gb|EEX82724.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 193 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KGYGFI P+ + D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARIVCEVRHGD 81 >gi|270284256|ref|ZP_06193907.1| cold-shock domain protein [Bifidobacterium gallicum DSM 20093] gi|270277415|gb|EFA23269.1| cold-shock domain protein [Bifidobacterium gallicum DSM 20093] Length = 151 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G I+WY+ +KGYGFI E G DVFL A+ AG+ L +G V Y + Sbjct: 26 GKIRWYDANKGYGFI----ENEEGKDVFLPAMAL-PAGVTTLRKGTKVEYSVI 73 >gi|148559681|ref|YP_001259182.1| cold-shock family protein [Brucella ovis ATCC 25840] gi|225627734|ref|ZP_03785771.1| Cold shock-like protein cspG [Brucella ceti str. Cudo] gi|254710329|ref|ZP_05172140.1| cold-shock family protein [Brucella pinnipedialis B2/94] gi|254714325|ref|ZP_05176136.1| cold-shock family protein [Brucella ceti M644/93/1] gi|254717224|ref|ZP_05179035.1| cold-shock family protein [Brucella ceti M13/05/1] gi|254719316|ref|ZP_05181127.1| cold-shock family protein [Brucella sp. 83/13] gi|256031823|ref|ZP_05445437.1| cold-shock family protein [Brucella pinnipedialis M292/94/1] gi|256160002|ref|ZP_05457711.1| cold-shock family protein [Brucella ceti M490/95/1] gi|256255223|ref|ZP_05460759.1| cold-shock family protein [Brucella ceti B1/94] gi|256369687|ref|YP_003107197.1| cold-shock family protein [Brucella microti CCM 4915] gi|260168957|ref|ZP_05755768.1| cold-shock family protein [Brucella sp. F5/99] gi|261219042|ref|ZP_05933323.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M13/05/1] gi|261222420|ref|ZP_05936701.1| cold-shock DNA-binding domain-containing protein [Brucella ceti B1/94] gi|261317893|ref|ZP_05957090.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261322102|ref|ZP_05961299.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M644/93/1] gi|261758450|ref|ZP_06002159.1| cold-shock DNA-binding domain-containing protein [Brucella sp. F5/99] gi|265984317|ref|ZP_06097052.1| cold-shock DNA-binding domain-containing protein [Brucella sp. 83/13] gi|265988922|ref|ZP_06101479.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265998387|ref|ZP_06110944.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M490/95/1] gi|294852602|ref|ZP_06793275.1| cold shock protein [Brucella sp. NVSL 07-0026] gi|306839091|ref|ZP_07471908.1| cold-shock family protein [Brucella sp. NF 2653] gi|306840269|ref|ZP_07473043.1| cold-shock family protein [Brucella sp. BO2] gi|306844169|ref|ZP_07476762.1| cold-shock family protein [Brucella sp. BO1] gi|148370938|gb|ABQ60917.1| cold-shock family protein [Brucella ovis ATCC 25840] gi|225617739|gb|EEH14784.1| Cold shock-like protein cspG [Brucella ceti str. Cudo] gi|255999849|gb|ACU48248.1| cold-shock family protein [Brucella microti CCM 4915] gi|260921004|gb|EEX87657.1| cold-shock DNA-binding domain-containing protein [Brucella ceti B1/94] gi|260924131|gb|EEX90699.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M13/05/1] gi|261294792|gb|EEX98288.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M644/93/1] gi|261297116|gb|EEY00613.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261738434|gb|EEY26430.1| cold-shock DNA-binding domain-containing protein [Brucella sp. F5/99] gi|262552855|gb|EEZ08845.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M490/95/1] gi|264661119|gb|EEZ31380.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|264662909|gb|EEZ33170.1| cold-shock DNA-binding domain-containing protein [Brucella sp. 83/13] gi|294821191|gb|EFG38190.1| cold shock protein [Brucella sp. NVSL 07-0026] gi|306275444|gb|EFM57181.1| cold-shock family protein [Brucella sp. BO1] gi|306289796|gb|EFM60978.1| cold-shock family protein [Brucella sp. BO2] gi|306405638|gb|EFM61900.1| cold-shock family protein [Brucella sp. NF 2653] Length = 193 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KGYGFI P+ + D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARIVCEVRHGD 81 >gi|329850706|ref|ZP_08265551.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] gi|328841021|gb|EGF90592.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] Length = 187 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 5 GSIKWYNPDKGYGFITPEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G +KW++ KGYGFI P+ +T S DV LH S++ G + EG +T Sbjct: 20 GHVKWFDAAKGYGFIVPQDATLTSTRDVLLHISSLRDLGRDSAHEGAKIT 69 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 +IKW+N KGYGF+ G+ + D+F+H + GL ++ +G + + Sbjct: 121 ATIKWFNRTKGYGFVV-RGNDPT--DIFIHIETLRRYGLEDVQQGDTIMVRF 169 >gi|238750463|ref|ZP_04611964.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380] gi|238790115|ref|ZP_04633892.1| Cold shock-like protein cspI [Yersinia frederiksenii ATCC 33641] gi|238794420|ref|ZP_04638030.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909] gi|238711394|gb|EEQ03611.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380] gi|238721784|gb|EEQ13447.1| Cold shock-like protein cspI [Yersinia frederiksenii ATCC 33641] gi|238726215|gb|EEQ17759.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909] Length = 66 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 3 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQ 53 >gi|325287795|ref|YP_004263585.1| cold-shock DNA-binding domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323249|gb|ADY30714.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM 7489] Length = 63 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFIT EG + D F+H S + + EG +V YD + N Sbjct: 3 KGTVKFFNDTKGFGFITEEGVEK---DHFVHISGLVD----EIREGDVVEYDL--QEGNK 53 Query: 64 KYSAENLKLV 73 +A N+K++ Sbjct: 54 GLNAVNVKVI 63 >gi|163746554|ref|ZP_02153912.1| cold shock protein [Oceanibulbus indolifex HEL-45] gi|161380439|gb|EDQ04850.1| cold shock protein [Oceanibulbus indolifex HEL-45] Length = 186 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GF+ + G DV LH + + + G ++ +G +T Q D G Sbjct: 25 GVVKWFDPVKGFGFVVADA---GGSDVLLHVNVLRNFGQSSIADGARITIRVQQTD-RGA 80 Query: 65 YSAENLKLVP 74 + E L + P Sbjct: 81 QAVEVLFIEP 90 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G E DVFLH + +GL +L G+ + + D G + Sbjct: 119 VKWFDKAKGFGFANVFGRAE---DVFLHIDVLRQSGLCDLQPGEALAMRVIVGD-RGHLA 174 Query: 67 AE 68 AE Sbjct: 175 AE 176 >gi|17987014|ref|NP_539648.1| cold shock protein [Brucella melitensis bv. 1 str. 16M] gi|225852761|ref|YP_002732994.1| cold shock-like protein CspG [Brucella melitensis ATCC 23457] gi|256044907|ref|ZP_05447811.1| Cold shock-like protein cspG [Brucella melitensis bv. 1 str. Rev.1] gi|256113823|ref|ZP_05454616.1| Cold shock-like protein cspG [Brucella melitensis bv. 3 str. Ether] gi|256263754|ref|ZP_05466286.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260565491|ref|ZP_05835975.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|265991335|ref|ZP_06103892.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995172|ref|ZP_06107729.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|17982667|gb|AAL51912.1| cold shock protein [Brucella melitensis bv. 1 str. 16M] gi|225641126|gb|ACO01040.1| Cold shock-like protein cspG [Brucella melitensis ATCC 23457] gi|260151559|gb|EEW86653.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|262766285|gb|EEZ12074.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263002119|gb|EEZ14694.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093812|gb|EEZ17817.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|326409287|gb|ADZ66352.1| cold shock-like protein CspG [Brucella melitensis M28] gi|326538998|gb|ADZ87213.1| cold shock-like protein cspG [Brucella melitensis M5-90] Length = 193 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + Sbjct: 118 LERVIVKWFNRTKGFGFLT---RGEGTEDIFIHMETLRRFGMMELRPGQVVLIRF 169 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KGYGFI P+ + D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARIVCEVRHGD 81 >gi|302392725|ref|YP_003828545.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] gi|302204802|gb|ADL13480.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] Length = 67 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 4/46 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46 M+ G++KW++ +KG+GFI DDVF+H SA+A G +L Sbjct: 1 MILSGTVKWFDSNKGFGFI----ERPDEDDVFVHYSAIAEDGFKDL 42 >gi|161528035|ref|YP_001581861.1| cold-shock DNA-binding domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160339336|gb|ABX12423.1| cold-shock DNA-binding domain protein [Nitrosopumilus maritimus SCM1] Length = 63 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 8/54 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N KG+GFI EG GDD+F+H++ V G N EG V ++ Sbjct: 1 MEQGTVKWFNRTKGFGFIEREG----GDDLFVHKTDV--DGFIN--EGDKVEFE 46 >gi|119503292|ref|ZP_01625376.1| cold shock protein, CspA family-like protein [marine gamma proteobacterium HTCC2080] gi|119460938|gb|EAW42029.1| cold shock protein, CspA family-like protein [marine gamma proteobacterium HTCC2080] Length = 138 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 H G+IKW+N KG+GFI + G +VF+H V ++ +GQ V Y +D Sbjct: 74 HEGNIKWFNATKGFGFIV----GDDGAEVFVHYRNVEGLTKRSIKQGQRVAYSVRASDRG 129 Query: 63 GKYSAENLKLV 73 + AE +K V Sbjct: 130 PQ--AEGVKAV 138 >gi|307327750|ref|ZP_07606934.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306886648|gb|EFN17650.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 127 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H S+V G+ L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVH-SSVLPEGVDALKPGQRVEFGVV 51 >gi|259507144|ref|ZP_05750044.1| cold-shock domain family protein [Corynebacterium efficiens YS-314] gi|259165267|gb|EEW49821.1| cold-shock domain family protein [Corynebacterium efficiens YS-314] Length = 122 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 9/66 (13%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KWY+P++G+GF+ S G+D F+ + V G+ L +GQ + +D+ A G+ Sbjct: 1 MKWYDPERGFGFV----SNPGGEDCFVGKQ-VLPKGVTELHQGQRIEFDF----AAGRKG 51 Query: 67 AENLKL 72 + L++ Sbjct: 52 PQALRV 57 >gi|227504265|ref|ZP_03934314.1| cold shock protein [Corynebacterium striatum ATCC 6940] gi|227199152|gb|EEI79200.1| cold shock protein [Corynebacterium striatum ATCC 6940] Length = 126 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ DKG+GF++ G +DV++ R+ V G+ L +GQ + +D+ A G+ Sbjct: 4 GKVKWFDADKGFGFVSNPGD----EDVYVGRN-VLPEGVDELVQGQRIEFDF----AAGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 RGPQALRV 62 >gi|157118310|ref|XP_001653164.1| Y-box binding protein [Aedes aegypti] gi|108883287|gb|EAT47512.1| Y-box binding protein [Aedes aegypti] Length = 304 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G +KW+N GYGFI G T+ +DVF+H+SA+A + ++ +G++V +D V Sbjct: 17 GVVKWFNVKSGYGFIN-RGDTQ--EDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVV 70 >gi|22125131|ref|NP_668554.1| cold shock protein [Yersinia pestis KIM 10] gi|45442244|ref|NP_993783.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001] gi|21957990|gb|AAM84805.1|AE013726_8 homolog of Salmonella cold shock protein [Yersinia pestis KIM 10] gi|45437108|gb|AAS62660.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001] Length = 80 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 17 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQ 67 >gi|108804086|ref|YP_644023.1| cold-shock DNA-binding protein family protein [Rubrobacter xylanophilus DSM 9941] gi|108765329|gb|ABG04211.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus DSM 9941] Length = 197 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 5/58 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +KW++P+KGYGF+ G G+D+F+H S V +L +G V Y+ +N+ Sbjct: 134 EQGRVKWFDPEKGYGFLVRPG----GEDLFVHHSEV-EGDASSLGQGVEVEYEVGRNE 186 >gi|3821913|gb|AAC69698.1| major cold shock protein [Lactococcus lactis subsp. lactis] gi|3821917|gb|AAC69700.1| major cold shock protein [Lactococcus lactis subsp. cremoris] Length = 50 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 4/42 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 KG+GFIT +E G DVF H S + ++G L EGQ VT+D Sbjct: 1 KGFGFIT----SEDGQDVFAHFSQIQTSGFKTLDEGQKVTFD 38 >gi|291390788|ref|XP_002711897.1| PREDICTED: cold shock domain protein A short-like [Oryctolagus cuniculus] Length = 784 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G++KW+N KGYGFI S E DVF+H +A+ L ++ +G+ V D V+ Sbjct: 572 GTVKWFNVKKGYGFIHRHDSKE---DVFVHHTAITKNNPRKYLHSVGDGETVELDVVE 626 >gi|184201477|ref|YP_001855684.1| cold shock protein [Kocuria rhizophila DC2201] gi|183581707|dbj|BAG30178.1| cold shock protein [Kocuria rhizophila DC2201] Length = 127 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 9/66 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ DKG+GF+ +T+ G +VFLH SA+ G+ + G + + A+GK Sbjct: 4 GKVKWFDADKGFGFL----ATDDGQEVFLHSSALPR-GVTTVKPGTRMDFGI----ADGK 54 Query: 65 YSAENL 70 A+ L Sbjct: 55 RGAQAL 60 >gi|71281569|ref|YP_266916.1| cold shock DNA-binding domain-containing protein [Colwellia psychrerythraea 34H] gi|71147309|gb|AAZ27782.1| cold-shock DNA-binding domain family protein [Colwellia psychrerythraea 34H] Length = 201 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 10/65 (15%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE--GQLVTYDYVQNDANGK 64 I+W N DK +GFITP G SGD +F+H++A+ + N T ++++ +Q D G+ Sbjct: 8 IRW-NTDKAFGFITPNG---SGDTIFIHKTALKNR---NRTPKINDIISFSVIQ-DNQGR 59 Query: 65 YSAEN 69 Y A+ Sbjct: 60 YCADQ 64 >gi|305665589|ref|YP_003861876.1| hypothetical protein FB2170_04800 [Maribacter sp. HTCC2170] gi|88710345|gb|EAR02577.1| hypothetical protein FB2170_04800 [Maribacter sp. HTCC2170] Length = 64 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 6/51 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++K++N KGYGFIT + E+G D+F+H +A+ L EG V Y+ Sbjct: 3 GTVKFFNESKGYGFITND---ETGSDIFVHATALNGV---ELKEGDKVEYE 47 >gi|312138422|ref|YP_004005758.1| cold shock protein [Rhodococcus equi 103S] gi|311887761|emb|CBH47073.1| cold shock protein [Rhodococcus equi 103S] Length = 147 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ +KG+GF+ S E G+DV++ SA+ + L GQ V +D A Sbjct: 11 VPTGKVKWYDVEKGFGFL----SQEEGEDVYVRASAL-PGDVDGLKAGQRVEFDM----A 61 Query: 62 NGKYSAENLKL 72 G+ + LK+ Sbjct: 62 AGRRGPQALKV 72 >gi|260433622|ref|ZP_05787593.1| cold shock DNA-binding domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417450|gb|EEX10709.1| cold shock DNA-binding domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 175 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 RG +KW++P KGYGF+ S E G D+ LH + + + G ++ +G Sbjct: 12 RGHVKWFDPSKGYGFVV---SDEGGPDILLHVNVLRNFGQSSVADG 54 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G +E DVFLH + +GL +L G+ + V + G+ + Sbjct: 108 VKWFDKAKGFGFANVFGRSE---DVFLHIEVLRRSGLADLQPGEALAM-RVIDGKRGRMA 163 Query: 67 AENL 70 A+ L Sbjct: 164 AQVL 167 >gi|325674581|ref|ZP_08154268.1| cold-shock domain family protein [Rhodococcus equi ATCC 33707] gi|325554167|gb|EGD23842.1| cold-shock domain family protein [Rhodococcus equi ATCC 33707] Length = 140 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ +KG+GF+ S E G+DV++ SA+ + L GQ V +D A Sbjct: 4 VPTGKVKWYDVEKGFGFL----SQEEGEDVYVRASAL-PGDVDGLKAGQRVEFDM----A 54 Query: 62 NGKYSAENLKL 72 G+ + LK+ Sbjct: 55 AGRRGPQALKV 65 >gi|317154064|ref|YP_004122112.1| Cold-shock protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316944315|gb|ADU63366.1| Cold-shock protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 76 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 M G + W+N KG+GFIT + G DVF+H + + G +L G+ V+Y Sbjct: 1 MRREGKVTWFNDKKGFGFIT----GDDGLDVFVHYTEIVRDGFQSLEPGERVSY 50 >gi|257387598|ref|YP_003177371.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] gi|257169905|gb|ACV47664.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] Length = 64 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ ++N GYGFI E + E DVF H + +L EGQ V +D VQ D + Sbjct: 4 GTVDFFNDTGGYGFIDTEDADE---DVFFHMEDIGGP---DLEEGQEVEFDIVQADKGPR 57 Query: 65 YSAENL 70 AENL Sbjct: 58 --AENL 61 >gi|238796661|ref|ZP_04640167.1| Cold shock-like protein cspB [Yersinia mollaretii ATCC 43969] gi|238719392|gb|EEQ11202.1| Cold shock-like protein cspB [Yersinia mollaretii ATCC 43969] Length = 66 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 3 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTEYKTLDEGQNVEFSIEQ 53 >gi|150017771|ref|YP_001310025.1| cold-shock DNA-binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904236|gb|ABR35069.1| putative cold-shock DNA-binding domain protein [Clostridium beijerinckii NCIMB 8052] Length = 63 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 7/51 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++K++N +KG+GFI EG DVF+H S+++ F++ EG V +D Sbjct: 4 GTVKFFNSEKGFGFIEVEGE----KDVFVHSSSLSG---FSIQEGDKVQFD 47 >gi|239834349|ref|ZP_04682677.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301] gi|239822412|gb|EEQ93981.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301] Length = 69 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Query: 19 ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 I PE + D F+H SAV AG+ L EGQ V+++ V + +GK +A+NL+ Sbjct: 18 IQPE---DGSPDEFVHISAVERAGMHTLNEGQKVSFELVADRRSGKKAADNLQ 67 >gi|157963490|ref|YP_001503524.1| cold-shock DNA-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|157848490|gb|ABV88989.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC 700345] Length = 188 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ RG + +N ++G+GFI PE T + DVF+H SA+ + Q++ + Q D Sbjct: 2 LMERGVLVRWNEERGFGFIKPE--TTNAKDVFIHISALKHMARKPVVGDQILFHSERQAD 59 Query: 61 ANGKYSAENLKLVPKSSN 78 K S N++ V +N Sbjct: 60 GKLKASKANIEGVAVVAN 77 >gi|218961622|ref|YP_001741397.1| cold-shock domain family protein [Candidatus Cloacamonas acidaminovorans] gi|167730279|emb|CAO81191.1| cold-shock domain family protein [Candidatus Cloacamonas acidaminovorans] Length = 74 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 7/60 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG---LFNLTEGQLVTYDYVQND 60 +G +KW+N +KGYGFI T+ + F+H ++ + L L + +LVT+D ++ D Sbjct: 6 KGKVKWFNKNKGYGFII----TDDNKEYFVHWKSIVTNSPRELKVLEQDELVTFDLMETD 61 >gi|300779123|ref|ZP_07088981.1| CspA family cold shock transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300504633|gb|EFK35773.1| CspA family cold shock transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 64 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 8/71 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFI+P T+ D+F+H S + S ++ E V +D ++D Sbjct: 1 MQQGTVKFFNEAKGFGFISP---TDGSKDIFVHSSGLDSR---SIRENDKVVFDVQKSDK 54 Query: 62 NGKYSAENLKL 72 +A N+KL Sbjct: 55 G--LNAVNVKL 63 >gi|83814746|ref|YP_445845.1| hypothetical protein SRU_1727 [Salinibacter ruber DSM 13855] gi|294507754|ref|YP_003571812.1| cold shock-like protein [Salinibacter ruber M8] gi|83756140|gb|ABC44253.1| conserved domain protein [Salinibacter ruber DSM 13855] gi|294344082|emb|CBH24860.1| cold shock-like protein [Salinibacter ruber M8] Length = 71 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW++ +KGYGFI E E D+F+H S + + G +L E V + Sbjct: 7 GTVKWFSNEKGYGFIVAEDRDE---DLFVHYSEIDTEGFKSLDEDDRVEF 53 >gi|295704910|ref|YP_003597985.1| cold shock protein [Bacillus megaterium DSM 319] gi|294802569|gb|ADF39635.1| cold shock protein [Bacillus megaterium DSM 319] Length = 72 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 4/42 (9%) Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 GFI EG GDDVF+H S++ S G +L EGQ VT+D Q Sbjct: 21 GFIEIEG----GDDVFVHFSSIQSEGFKSLDEGQKVTFDIEQ 58 >gi|224370359|ref|YP_002604523.1| CspB2 [Desulfobacterium autotrophicum HRM2] gi|223693076|gb|ACN16359.1| CspB2 [Desulfobacterium autotrophicum HRM2] Length = 66 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI E+G DV++H + + S L++G V+++ ++N G Sbjct: 3 EGIVKWFNDSKGFGFI----EQENGPDVYVHHTGINSTSFKPLSQGDRVSFE-IENGQKG 57 Query: 64 KYSA 67 + Sbjct: 58 TVAV 61 >gi|254514075|ref|ZP_05126136.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR5-3] gi|219676318|gb|EED32683.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR5-3] Length = 70 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFIT E DVF+H ++ G L EG+ V + + Sbjct: 7 GTVKWFNNAKGFGFITGESFD---GDVFVHFRSIVGDGFRTLNEGEEVEFTLTE 57 >gi|51597265|ref|YP_071456.1| cold shock protein [Yersinia pseudotuberculosis IP 32953] gi|108808380|ref|YP_652296.1| cold shock protein [Yersinia pestis Antiqua] gi|108811305|ref|YP_647072.1| cold shock protein [Yersinia pestis Nepal516] gi|123441290|ref|YP_001005277.1| cold shock-like protein cspG [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145598899|ref|YP_001162975.1| cold shock protein [Yersinia pestis Pestoides F] gi|149365449|ref|ZP_01887484.1| cold shock protein [Yersinia pestis CA88-4125] gi|153949592|ref|YP_001400051.1| cold shock protein [Yersinia pseudotuberculosis IP 31758] gi|162420073|ref|YP_001607873.1| cold shock protein [Yersinia pestis Angola] gi|165925316|ref|ZP_02221148.1| cold shock protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939935|ref|ZP_02228473.1| cold shock protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008469|ref|ZP_02229367.1| cold shock protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212413|ref|ZP_02238448.1| cold shock protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167398538|ref|ZP_02304062.1| cold shock protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421189|ref|ZP_02312942.1| cold shock protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423656|ref|ZP_02315409.1| cold shock protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023370|ref|YP_001719875.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|186896369|ref|YP_001873481.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|218929733|ref|YP_002347608.1| cold shock protein [Yersinia pestis CO92] gi|229838213|ref|ZP_04458372.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895592|ref|ZP_04510763.1| cold shock protein [Yersinia pestis Pestoides A] gi|229898778|ref|ZP_04513923.1| cold shock protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901551|ref|ZP_04516673.1| cold shock protein [Yersinia pestis Nepal516] gi|270489738|ref|ZP_06206812.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|332162760|ref|YP_004299337.1| cold shock-like protein cspG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|61221540|sp|P0A362|CSPB_YERPE RecName: Full=Cold shock-like protein CspB gi|61221541|sp|P0A363|CSPB_YEREN RecName: Full=Cold shock-like protein CspB gi|3249024|gb|AAC24037.1| cold shock protein CspB [Yersinia enterocolitica] gi|51590547|emb|CAH22188.1| cold shock protein [Yersinia pseudotuberculosis IP 32953] gi|108774953|gb|ABG17472.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108780293|gb|ABG14351.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] gi|115348344|emb|CAL21278.1| cold shock protein [Yersinia pestis CO92] gi|122088251|emb|CAL11041.1| cold shock-like protein cspG [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145210595|gb|ABP40002.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|149291862|gb|EDM41936.1| cold shock protein [Yersinia pestis CA88-4125] gi|152961087|gb|ABS48548.1| cold shock protein [Yersinia pseudotuberculosis IP 31758] gi|162352888|gb|ABX86836.1| cold shock protein [Yersinia pestis Angola] gi|165912154|gb|EDR30793.1| cold shock protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922923|gb|EDR40074.1| cold shock protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992851|gb|EDR45152.1| cold shock protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206344|gb|EDR50824.1| cold shock protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166960678|gb|EDR56699.1| cold shock protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051042|gb|EDR62450.1| cold shock protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057826|gb|EDR67572.1| cold shock protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749904|gb|ACA67422.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186699395|gb|ACC90024.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|229681480|gb|EEO77574.1| cold shock protein [Yersinia pestis Nepal516] gi|229688326|gb|EEO80397.1| cold shock protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694579|gb|EEO84626.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701398|gb|EEO89426.1| cold shock protein [Yersinia pestis Pestoides A] gi|270338242|gb|EFA49019.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|318606863|emb|CBY28361.1| cold shock protein CspG [Yersinia enterocolitica subsp. palearctica Y11] gi|320016134|gb|ADV99705.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin 35] gi|325666990|gb|ADZ43634.1| cold shock-like protein cspG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859919|emb|CBX70249.1| cold shock-like protein cspB [Yersinia enterocolitica W22703] Length = 70 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 7 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQ 57 >gi|170783067|ref|YP_001711401.1| putative cold shock protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157637|emb|CAQ02835.1| putative cold shock protein [Clavibacter michiganensis subsp. sepedonicus] Length = 127 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 9/66 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K+Y+ DKG+GFI S++ G +VFLH SA+ S G+ + G + + A+GK Sbjct: 4 GKVKFYDEDKGFGFI----SSDDGQEVFLHASALPS-GVAGVKAGTRLEFGI----ADGK 54 Query: 65 YSAENL 70 A+ L Sbjct: 55 RGAQAL 60 >gi|189499792|ref|YP_001959262.1| cold-shock DNA-binding domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189495233|gb|ACE03781.1| cold-shock DNA-binding domain protein [Chlorobium phaeobacteroides BS1] Length = 96 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 5/47 (10%) Query: 1 MVHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNL 46 M + +KW++ KGYGFI P+G G+D+F+H SA+ S F + Sbjct: 1 MSRKSKVKWFDGKKGYGFIVNPDG----GEDIFVHFSAIVSEQSFKV 43 >gi|301166258|emb|CBW25833.1| cold shock-like protein [Bacteriovorax marinus SJ] Length = 64 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 6/54 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G +K+++ +KG+GFITPE G D+F+H + + S L EG V Y+ Sbjct: 1 METGKVKFFDQEKGFGFITPE---NGGKDIFVHITGIQSG---PLNEGDTVEYE 48 >gi|17533635|ref|NP_496366.1| Y-box family member (cey-1) [Caenorhabditis elegans] gi|3876637|emb|CAB04257.1| C. elegans protein F33A8.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 208 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 7/59 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 +G++KW+N GYGFI T++ +D+F+H++A+ + L +L + + V +D V+ Sbjct: 22 KGTVKWFNVKNGYGFIN---RTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVE 77 >gi|148273654|ref|YP_001223215.1| putative cold shock protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831584|emb|CAN02552.1| putative cold shock protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 127 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 9/66 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K+Y+ DKG+GFI S++ G +VFLH SA+ S G+ + G + + A+GK Sbjct: 4 GKVKFYDEDKGFGFI----SSDDGQEVFLHASALPS-GVAGVKAGTRLEFGI----ADGK 54 Query: 65 YSAENL 70 A+ L Sbjct: 55 RGAQAL 60 >gi|156972845|ref|YP_001443752.1| cold shock protein [Vibrio harveyi ATCC BAA-1116] gi|156524439|gb|ABU69525.1| hypothetical protein VIBHAR_00522 [Vibrio harveyi ATCC BAA-1116] Length = 69 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N KG+GFI S +G+D+F+H + G L EG V++ Sbjct: 7 GTVKWFNEAKGFGFI----SQANGNDLFVHFRNILGDGFKKLIEGDQVSF 52 >gi|9957540|gb|AAG09405.1|AF179614_1 cold shock protein B [Yersinia enterocolitica] Length = 62 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 7 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQ 57 >gi|68535487|ref|YP_250192.1| putative cold shock protein [Corynebacterium jeikeium K411] gi|260579770|ref|ZP_05847627.1| cold-shock domain family protein [Corynebacterium jeikeium ATCC 43734] gi|68263086|emb|CAI36574.1| putative cold shock protein [Corynebacterium jeikeium K411] gi|258602122|gb|EEW15442.1| cold-shock domain family protein [Corynebacterium jeikeium ATCC 43734] Length = 127 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KWY+ D+GYGF++ G +DV++ S V G+ L +GQ + Y+++ Sbjct: 4 GKVKWYDADRGYGFVSNPGD----EDVYVG-SQVLPDGVTELVKGQRIEYEFI 51 >gi|123441859|ref|YP_001005842.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088820|emb|CAL11626.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606254|emb|CBY27752.1| cold shock protein CspB [Yersinia enterocolitica subsp. palearctica Y11] Length = 69 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 5/51 (9%) Query: 5 GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N +GYGFI+P +GS DV++ ++A+A+ +L+EGQ V + Sbjct: 6 GRVKWFNQSEGYGFISPHDGSL----DVYVSKTAIANTKNKSLSEGQDVEF 52 >gi|159044337|ref|YP_001533131.1| putative cold shock protein [Dinoroseobacter shibae DFL 12] gi|157912097|gb|ABV93530.1| putative cold shock protein [Dinoroseobacter shibae DFL 12] Length = 173 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++P KG+GF+ E G D+ LH + + + G ++ +G + VQ G Sbjct: 13 GTVKWFDPKKGFGFVVGEA---DGPDILLHANVLRNFGQSSVADGSQIQI-RVQETPRGI 68 Query: 65 YSAENLKLVPKSSN 78 + E + + P + Sbjct: 69 QAVEVVAITPPEMD 82 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GF+ G+ E D+F+H + G +L G+ V + G+ Sbjct: 103 GRVKWFDKVKGFGFLNVFGADE---DIFVHMDVLRRCGFSDLQAGEAVAV-RIGESERGR 158 Query: 65 YSAENL 70 + E L Sbjct: 159 LALEVL 164 >gi|316971587|gb|EFV55344.1| tRNA-specific adenosine deaminase 2 [Trichinella spiralis] Length = 311 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 VH G ++++ ++G+G+ITP +G+D+F+H S V G + +G VTY Sbjct: 215 VHYGRVRYFCRERGHGYITPLDQNPAGEDIFVHISDV--EGDYAPHDGDEVTY 265 >gi|238757626|ref|ZP_04618810.1| Cold shock-like protein [Yersinia aldovae ATCC 35236] gi|238795858|ref|ZP_04639371.1| Cold shock-like protein [Yersinia mollaretii ATCC 43969] gi|238704131|gb|EEP96664.1| Cold shock-like protein [Yersinia aldovae ATCC 35236] gi|238720321|gb|EEQ12124.1| Cold shock-like protein [Yersinia mollaretii ATCC 43969] gi|330862904|emb|CBX73040.1| cold shock-like protein cspE [Yersinia enterocolitica W22703] Length = 77 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 5/51 (9%) Query: 5 GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N +GYGFI+P +GS DV++ ++A+A+ +L+EGQ V + Sbjct: 14 GRVKWFNQSEGYGFISPHDGSL----DVYVSKTAIANTKNKSLSEGQDVEF 60 >gi|88703592|ref|ZP_01101308.1| cold-shock domain family protein [Congregibacter litoralis KT71] gi|88702306|gb|EAQ99409.1| cold-shock domain family protein [Congregibacter litoralis KT71] Length = 70 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFIT E DVF+H ++ G L EG+ V + + Sbjct: 7 GTVKWFNNAKGFGFITGESFD---GDVFVHFRSIQGDGFRTLNEGEEVEFTLTE 57 >gi|297568405|ref|YP_003689749.1| cold-shock DNA-binding domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924320|gb|ADH85130.1| cold-shock DNA-binding domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 70 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI + + DVF+H + G +L +GQ V++ V+ Sbjct: 7 GRVKWFNAPKGFGFIERDNDS----DVFVHYRGIRGEGYRSLQDGQSVSFAVVETPKG-- 60 Query: 65 YSAENLKLV 73 AE+++++ Sbjct: 61 LQAEDVEVI 69 >gi|167467804|ref|ZP_02332508.1| major cold shock protein Cspa1 [Yersinia pestis FV-1] Length = 70 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 7 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQ 57 >gi|158295359|ref|XP_001237771.2| AGAP006108-PA [Anopheles gambiae str. PEST] gi|157015999|gb|EAU76557.2| AGAP006108-PA [Anopheles gambiae str. PEST] Length = 402 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G +KW+N GYGFI G T+ +DVF+H+SA+A + ++ +G+ V +D V Sbjct: 90 GVVKWFNVKSGYGFIN-RGDTQ--EDVFVHQSAIARNNPKKAVRSVGDGEQVEFDVV 143 >gi|238789311|ref|ZP_04633098.1| Cold shock-like protein [Yersinia frederiksenii ATCC 33641] gi|238792392|ref|ZP_04636026.1| Cold shock-like protein [Yersinia intermedia ATCC 29909] gi|238722643|gb|EEQ14296.1| Cold shock-like protein [Yersinia frederiksenii ATCC 33641] gi|238728318|gb|EEQ19838.1| Cold shock-like protein [Yersinia intermedia ATCC 29909] Length = 65 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 5/51 (9%) Query: 5 GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N +GYGFI+P +GS DV++ ++A+A+ +L+EGQ V + Sbjct: 2 GRVKWFNQSEGYGFISPHDGSL----DVYVSKTAIANTKNKSLSEGQDVEF 48 >gi|297563111|ref|YP_003682085.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847559|gb|ADH69579.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 127 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ DKG+GF+T + G +VF+H S++ G +L GQ V + A G+ Sbjct: 4 GKVKWYDGDKGFGFLT----RDDGGEVFVHSSSL-PPGTTSLRPGQKVDFGV----AEGR 54 Query: 65 YSAENLKL 72 A+ L++ Sbjct: 55 KGAQALQV 62 >gi|254282751|ref|ZP_04957719.1| 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR51-B] gi|219678954|gb|EED35303.1| 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR51-B] Length = 123 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +GSIKW+N KG+GFIT + G++VF+H V + GQ V Y + + Sbjct: 60 KGSIKWFNATKGFGFIT----GDDGNEVFVHFRNVEQLSKREIKPGQRVAYRVTETE 112 >gi|69246243|ref|ZP_00603856.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] gi|68195344|gb|EAN09793.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] Length = 35 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 4/34 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++KW+N +KG+GFI S E G DVF+H SA+ Sbjct: 4 GTVKWFNAEKGFGFI----SREDGSDVFVHFSAI 33 >gi|222148686|ref|YP_002549643.1| cold shock protein [Agrobacterium vitis S4] gi|221735672|gb|ACM36635.1| cold shock protein [Agrobacterium vitis S4] Length = 192 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T E +D+F+H + GL L GQ V + D Sbjct: 117 LERVLVKWFNRTKGFGFLT---RGEGTEDIFVHMETLRRFGLTELRPGQTVLVRFGNGD- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMAAE 179 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G +KW++ KG+GFI P+ + DV LH + + G + EG + Sbjct: 28 GVVKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTILEGTRIV 73 >gi|311897807|dbj|BAJ30215.1| putative cold shock protein [Kitasatospora setae KM-6054] Length = 127 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N KGYGF+ S + G +VF+H A+ AG+ L GQ V + Sbjct: 4 GQVKWFNETKGYGFL----SRDDGGEVFVHTKAL-PAGVTTLRPGQRVEF 48 >gi|227876361|ref|ZP_03994473.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris ATCC 35243] gi|269975926|ref|ZP_06182930.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris 28-1] gi|306817253|ref|ZP_07450999.1| cold-shock domain family protein [Mobiluncus mulieris ATCC 35239] gi|307700373|ref|ZP_07637412.1| putative cold shock protein [Mobiluncus mulieris FB024-16] gi|227842902|gb|EEJ53099.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris ATCC 35243] gi|269935754|gb|EEZ92284.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris 28-1] gi|304649933|gb|EFM47212.1| cold-shock domain family protein [Mobiluncus mulieris ATCC 35239] gi|307614358|gb|EFN93588.1| putative cold shock protein [Mobiluncus mulieris FB024-16] Length = 125 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 9/66 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ DKG+GFIT GS G +VFLH SA+ G+ G V Y + +GK Sbjct: 4 GKVKWYDADKGFGFIT--GS--DGIEVFLHASAL-PPGVTEPKAGTRVEYSVI----DGK 54 Query: 65 YSAENL 70 A+ + Sbjct: 55 RGAQAM 60 >gi|3121929|sp|Q52287|CSPA_PHOPO RecName: Full=Major cold shock protein gi|1402767|gb|AAC80250.1| major cold-shock protein [Photobacterium phosphoreum] Length = 46 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 1 EKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQ 43 >gi|288558834|sp|P45441|YBX2B_XENLA RecName: Full=Y-box-binding protein 2-B; AltName: Full=Cytoplasmic RNA-binding protein p54; AltName: Full=Frog Y-box protein 2-B; Short=FRGY2b; AltName: Full=Messenger ribonucleoprotein particle 3; Short=mRNP3 gi|161611735|gb|AAI55914.1| Csda-A protein [Xenopus laevis] Length = 324 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI +S +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 43 QGTVKWFNVRNGYGFIN---RNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99 Query: 60 D 60 + Sbjct: 100 E 100 >gi|172058435|ref|YP_001814895.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990956|gb|ACB61878.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum 255-15] Length = 66 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46 + +G +KW+N +KGYGFI T DVF+H SA+ + G +L Sbjct: 1 MEQGKVKWFNAEKGYGFI----ETSDAKDVFVHFSAIQADGYKSL 41 >gi|241895732|ref|ZP_04783028.1| cold shock protein CspA [Weissella paramesenteroides ATCC 33313] gi|241871099|gb|EER74850.1| cold shock protein CspA [Weissella paramesenteroides ATCC 33313] Length = 69 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +K + DKG+GFI +G DDVF+H SA+ + + +LT GQ V VQ Sbjct: 6 GYVKTWQSDKGFGFIELKGE----DDVFVHFSAIQTPRVRDLTVGQEVKLVVVQ 55 >gi|307823633|ref|ZP_07653862.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307735618|gb|EFO06466.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 107 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K + D+G+GFI+P+ + G D+F+H SA+ +T G ++ Y V D G Sbjct: 3 KGVLKTWKEDRGFGFISPD---DGGKDIFIHISALKGTSRRPVT-GDVIYYQ-VARDNRG 57 Query: 64 KYSAEN 69 KY A N Sbjct: 58 KYKAIN 63 >gi|147901492|ref|NP_001081167.1| Y-box-binding protein 2-B [Xenopus laevis] gi|214642|gb|AAA49924.1| p54 [Xenopus laevis] Length = 324 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI +S +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 43 QGTVKWFNVRNGYGFIN---RNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99 Query: 60 D 60 + Sbjct: 100 E 100 >gi|238759184|ref|ZP_04620352.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236] gi|238702600|gb|EEP95149.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236] Length = 66 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 3 GLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQ 53 >gi|227821970|ref|YP_002825941.1| cold shock protein [Sinorhizobium fredii NGR234] gi|227340970|gb|ACP25188.1| cold shock protein [Sinorhizobium fredii NGR234] Length = 192 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T TE D+F+H + GL L GQ+V + Sbjct: 117 LERVLVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLCRF 168 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G IKW++ KG+GFI P+ + DV LH + + G + EG V Sbjct: 28 GVIKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTVLEGARVV 73 >gi|126208205|ref|YP_001053430.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae L20] gi|126096997|gb|ABN73825.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 63 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFIT + D+F H S + S G +L GQ V ++ + + S Sbjct: 1 MKWFNSAKGFGFITSDNVE---GDIFAHFSEIQSEGYRSLKVGQKVQFELINGERGA--S 55 Query: 67 AENLKLVP 74 A + LV Sbjct: 56 AAKISLVE 63 >gi|322510909|gb|ADX06222.1| cold-shock DNA-binding domain-containing protein [Organic Lake phycodnavirus 2] Length = 88 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+ E+G + F H S ++ G L G+ V+ V D N K Sbjct: 4 VKWFNKRKGFGFVV----DETGSEYFCHHSDISITGYKYLRAGEYVSGTVVNMDGNKKKL 59 Query: 67 AENLKLVP 74 + L VP Sbjct: 60 SNILPPVP 67 >gi|316967791|gb|EFV52174.1| DNA-binding protein A [Trichinella spiralis] Length = 377 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 3/41 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF 44 +G +KW+N GYGFI ++G+D+F+H+ + +S LF Sbjct: 122 KGKVKWFNVKNGYGFIN---RLDTGEDIFVHQVSCSSESLF 159 >gi|47214045|emb|CAG00703.1| unnamed protein product [Tetraodon nigroviridis] Length = 134 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 7/59 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+LV +D ++ Sbjct: 9 QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGELVEFDVIE 64 >gi|72160638|ref|YP_288295.1| cold-shock DNA-binding protein family protein [Thermobifida fusca YX] gi|71914370|gb|AAZ54272.1| cold-shock DNA-binding protein family [Thermobifida fusca YX] Length = 127 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KWY+ KG+GF+T + G +VFLH SA+ G L GQ V + V+ Sbjct: 4 GKVKWYDAGKGFGFLT----KDDGGEVFLHASAL-PPGTTTLRPGQRVEFGIVE 52 >gi|305664855|ref|YP_003861142.1| cold shock protein [Maribacter sp. HTCC2170] gi|88707977|gb|EAR00216.1| cold shock protein [Maribacter sp. HTCC2170] Length = 64 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KGYGFIT +GS E D F+H S + + EG +V ++ Q Sbjct: 3 KGTVKFFNDSKGYGFITEDGSNE---DHFVHISGLID----EVREGDVVEFELQQGKKG- 54 Query: 64 KYSAENLKLV 73 +A N+K+V Sbjct: 55 -LNAVNVKVV 63 >gi|227487732|ref|ZP_03918048.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227542371|ref|ZP_03972420.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227092234|gb|EEI27546.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227181569|gb|EEI62541.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 129 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G +KWY+PDKG+GF S +DV + +S V G+ L GQ + +D+ Sbjct: 4 GKVKWYDPDKGFGF----ASNPGQEDVHISKS-VLPEGVDTLHPGQRIEFDF 50 >gi|148555471|ref|YP_001263053.1| cold-shock DNA-binding protein family protein [Sphingomonas wittichii RW1] gi|148500661|gb|ABQ68915.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1] Length = 198 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46 +KW+N KGYGF+ +G T+ D+F+H V AGL +L Sbjct: 137 VKWFNRLKGYGFLVRDGETQ---DIFIHMETVRRAGLPDL 173 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++KW++ +G+GFI +G DV +H S + G L EG + + V D Sbjct: 36 GAVKWFDATRGFGFIATDGDR---GDVLVHFSVLRDHGRRTLPEGARIACEVVARD 88 >gi|54026194|ref|YP_120436.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54017702|dbj|BAD59072.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 68 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++ W++ KG+GFI +G G DVF+ + G +L EGQ V +D Q+ + Sbjct: 3 QGTVLWFDSKKGFGFIAQDG---GGADVFVDYLELVGGGFRSLHEGQRVRFDLRQSKSG 58 >gi|281344168|gb|EFB19752.1| hypothetical protein PANDA_021601 [Ailuropoda melanoleuca] Length = 310 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQN 59 RGS+KW+N GYGFI+ + E DVF+H+ A+ ++ +G+ V +D VQ Sbjct: 37 RGSVKWFNVKNGYGFISRHDTQE---DVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQG 93 Query: 60 D 60 + Sbjct: 94 E 94 >gi|226364441|ref|YP_002782223.1| cold shock protein [Rhodococcus opacus B4] gi|226242930|dbj|BAH53278.1| cold shock protein [Rhodococcus opacus B4] Length = 139 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V G +KWY+ +KG+GF+ S E G+DV++ SA+ G+ L GQ V + Sbjct: 4 VPTGKVKWYDVEKGFGFL----SQEEGEDVYVRSSALPE-GVEGLKAGQRVEF 51 >gi|92117674|ref|YP_577403.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91800568|gb|ABE62943.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 68 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+K++N +KGYGFI P+ T D+FLH +A + + V Y+ V +G+ Sbjct: 4 GSVKFFNAEKGYGFIQPDDGTP---DIFLHVHGLADKLRYPCPRDR-VEYE-VGKGPDGR 58 Query: 65 YSAENLKLV 73 AE + L+ Sbjct: 59 LRAERVALI 67 >gi|332162199|ref|YP_004298776.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666429|gb|ADZ43073.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 69 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 5/51 (9%) Query: 5 GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW+N +GYGFI+P +GS DV++ ++A+A+ +L+EGQ V + Sbjct: 6 GRVKWFNQSEGYGFISPHDGSL----DVYVSKTAIANTKNKSLSEGQDVEF 52 >gi|229488838|ref|ZP_04382704.1| cold-shock DNA-binding domain protein [Rhodococcus erythropolis SK121] gi|229324342|gb|EEN90097.1| cold-shock DNA-binding domain protein [Rhodococcus erythropolis SK121] Length = 140 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ +KG+GF+ S E G+DV++ SA+ G+ L GQ V + A Sbjct: 4 VPTGKVKWYDVEKGFGFL----SQEEGEDVYVRASALPE-GVEGLKAGQRVEFGM----A 54 Query: 62 NGKYSAENLKL 72 G+ + L L Sbjct: 55 AGRRGPQALSL 65 >gi|159037812|ref|YP_001537065.1| cold-shock DNA-binding domain-containing protein [Salinispora arenicola CNS-205] gi|157916647|gb|ABV98074.1| cold-shock DNA-binding domain protein [Salinispora arenicola CNS-205] Length = 138 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 18/82 (21%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH-------RSAVASAGLFNLTEGQLVTY 54 + +G+I ++ +GYGFI P G GDDVF+H R AVA+ G V+Y Sbjct: 1 MEKGTIVRFDDVRGYGFIAPFG---GGDDVFVHANDFGDQRHAVAA--------GMRVSY 49 Query: 55 DYVQNDANGKYSAENLKLVPKS 76 + VQ++ K ++ L+ P S Sbjct: 50 EVVQSERGLKVASVVLESAPAS 71 >gi|313205947|ref|YP_004045124.1| colD-shock DNA-binding protein family [Riemerella anatipestifer DSM 15868] gi|312445263|gb|ADQ81618.1| cold-shock DNA-binding protein family [Riemerella anatipestifer DSM 15868] gi|315022260|gb|EFT35288.1| Cold shock protein CspA [Riemerella anatipestifer RA-YM] gi|325336613|gb|ADZ12887.1| Cold shock protein [Riemerella anatipestifer RA-GD] Length = 63 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFITP + G+DVF+H S + + + E V Y+ Q Sbjct: 1 MQEGTVKFFNETKGFGFITP---SNGGEDVFVHTSGLKTK----VHENDKVVYELQQGKK 53 Query: 62 NGKYSAENLKL 72 +A N+KL Sbjct: 54 G--INAVNVKL 62 >gi|47114837|emb|CAE48342.1| unnamed protein product [Methylocystis sp. SC2] Length = 183 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G IKW++ KGYGF+ P+ + DD+ LH + + +G+ EG V + Sbjct: 20 GRIKWFDVAKGYGFVVPD---DGSDDILLHVTILRRSGMQTAFEGARVVCE 67 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T TE D+FLH V G+ L G V Y G + Sbjct: 114 VKWFNRMKGFGFLTRGEGTE---DIFLHMETVRRYGMTELKPGDSVLVRY-GGGPKGLMA 169 Query: 67 AENLKLVPKS 76 AE L KS Sbjct: 170 AEVRPLDAKS 179 >gi|15965471|ref|NP_385824.1| putative cold shock transcription regulator protein [Sinorhizobium meliloti 1021] gi|307302592|ref|ZP_07582348.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307318438|ref|ZP_07597872.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|15074652|emb|CAC46297.1| Putative cold shock transcription regulator [Sinorhizobium meliloti 1021] gi|306895778|gb|EFN26530.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306902956|gb|EFN33547.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 192 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T TE D+F+H + GL L GQ+V + Sbjct: 117 LERVLVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLCRF 168 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G IKW++ KG+GFI P+ + DV LH + + G + EG V Sbjct: 28 GVIKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTVLEGARVV 73 >gi|303283324|ref|XP_003060953.1| cold-shock protein with RNA binding domain [Micromonas pusilla CCMP1545] gi|226457304|gb|EEH54603.1| cold-shock protein with RNA binding domain [Micromonas pusilla CCMP1545] Length = 316 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ W+N KG+GFIT E + D+F+H+S + S G +L + + V + +Q +G+ Sbjct: 42 GTVNWFNVAKGFGFITRE---DGQGDIFVHQSDIYSEGFRSLRDEEPVEFT-LQEIGDGR 97 Query: 65 YSA 67 Y A Sbjct: 98 YKA 100 >gi|308510156|ref|XP_003117261.1| CRE-CEY-1 protein [Caenorhabditis remanei] gi|308242175|gb|EFO86127.1| CRE-CEY-1 protein [Caenorhabditis remanei] Length = 202 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 7/59 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 +G++KW+N GYGFI T++ +D+F+H++A+ + L +L + + V +D V+ Sbjct: 22 KGTVKWFNVKNGYGFIN---RTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVE 77 >gi|225011297|ref|ZP_03701753.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-3C] gi|225004553|gb|EEG42519.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-3C] Length = 63 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 6/51 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++K++N KGYGFIT + ESG D F+H +A+ + EG V+Y+ Sbjct: 3 GTVKFFNGSKGYGFITND---ESGKDTFVHATALNG---LQINEGDKVSYE 47 >gi|150396662|ref|YP_001327129.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150028177|gb|ABR60294.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] Length = 192 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N KG+GF+T TE D+F+H + GL L GQ+V + Sbjct: 117 LERVLVKWFNRTKGFGFLTRGEGTE---DIFVHMETLRRFGLTELRPGQVVLCRF 168 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G IKW++ KG+GFI P+ + DV LH + + G + EG V Sbjct: 28 GVIKWFDVAKGFGFIVPDNGMQ---DVLLHVTCLRRDGYQTVLEGARV 72 >gi|14602477|gb|AAH09744.1| CSDA protein [Homo sapiens] Length = 303 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L +L +G+ V +D V+ + Sbjct: 93 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSLGDGETVEFDVVEGE 149 >gi|84687162|ref|ZP_01015043.1| cold shock DNA-binding domain protein [Maritimibacter alkaliphilus HTCC2654] gi|84664750|gb|EAQ11233.1| cold shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2654] Length = 185 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V RG++KW++P KG+GF+ + + G D+ LH + + + G ++ + + VQ+ Sbjct: 20 VQRGTVKWFDPAKGFGFVVAD---QGGPDILLHANVLRNFGQSSVADRAGIEI-VVQDTP 75 Query: 62 NGKYSAENLKL 72 G + E L + Sbjct: 76 RGMQAVEVLAI 86 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 +KW++ KG+GF G E DVF+H + +GL +L G+ + Sbjct: 116 VKWFDKGKGFGFANAFGKPE---DVFIHVEVLRRSGLADLQPGEAI 158 >gi|157126269|ref|XP_001654567.1| hypothetical protein AaeL_AAEL002060 [Aedes aegypti] gi|108882539|gb|EAT46764.1| hypothetical protein AaeL_AAEL002060 [Aedes aegypti] Length = 192 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 7/63 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT----EGQLVTYDYVQND 60 G++KW+N G+GFIT ++G+D+F+H+S + + T +G++V + + + Sbjct: 36 GTVKWFNAKDGFGFITRH---DTGEDIFVHKSCIFKPNRNHFTKSIGDGEIVEFGLIASK 92 Query: 61 ANG 63 G Sbjct: 93 VTG 95 >gi|226308122|ref|YP_002768082.1| cold shock protein [Rhodococcus erythropolis PR4] gi|226187239|dbj|BAH35343.1| probable cold shock protein [Rhodococcus erythropolis PR4] Length = 137 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF+ S E G+DV++ SA+ G+ L GQ V + A G+ Sbjct: 4 GKVKWYDVEKGFGFL----SQEEGEDVYVRASALPE-GVEGLKAGQRVEFGM----AAGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|242008101|ref|XP_002424851.1| Y box binding protein, putative [Pediculus humanus corporis] gi|212508401|gb|EEB12113.1| Y box binding protein, putative [Pediculus humanus corporis] Length = 264 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT----EGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+ L +G++V +D V Sbjct: 26 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIVKNNPKKLVRSVGDGEVVEFDVV 79 >gi|2739396|gb|AAB94634.1| Y-box protein [Drosophila melanogaster] Length = 359 Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 6/56 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS---AGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI + E DVF+H+SA+A+ + ++ +G++V +D V Sbjct: 65 GTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIANNPKKAVRSVGDGEVVEFDVV 117 >gi|332025391|gb|EGI65558.1| Y-box factor-like protein [Acromyrmex echinatior] Length = 362 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS----AGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+ + ++ +G++V +D V Sbjct: 26 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVV 79 >gi|254491496|ref|ZP_05104675.1| conserved hypothetical protein [Methylophaga thiooxidans DMS010] gi|224462974|gb|EEF79244.1| conserved hypothetical protein [Methylophaga thiooxydans DMS010] Length = 207 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 10/75 (13%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G IK +N KGYGFI PE G D+FLH +V S G G+ + Y ++ N Sbjct: 5 RKGKIKTWNEGKGYGFIIPE---SGGKDIFLHIKSVQSRGRVP-KLGETIAYTLSKDKQN 60 Query: 63 ------GKYSAENLK 71 Y E LK Sbjct: 61 RLCAIDATYDGEKLK 75 >gi|160914513|ref|ZP_02076728.1| hypothetical protein EUBDOL_00519 [Eubacterium dolichum DSM 3991] gi|158433671|gb|EDP11960.1| hypothetical protein EUBDOL_00519 [Eubacterium dolichum DSM 3991] Length = 65 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +K +N +KGYGFIT EG G D+F H S + G + V ++ V+ + Sbjct: 2 QGKVKMFNQEKGYGFITREG----GKDIFFHYSQLVMEGYKTIDPEASVEFELVETE 54 >gi|147902682|ref|NP_001088341.1| cold shock domain containing C2, RNA binding [Xenopus laevis] gi|54038112|gb|AAH84399.1| LOC495181 protein [Xenopus laevis] Length = 152 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ KG+GFITPE + G D+FLH S + G + EG VTY N Sbjct: 69 KGVCKCFSRSKGHGFITPE---DGGPDIFLHISDI--EGEYVPMEGDEVTYKVCTIPPKN 123 Query: 63 GKYSAENLKLV 73 K+ A +K+ Sbjct: 124 EKHQAVEVKIT 134 >gi|330862902|emb|CBX73039.1| cold shock-like protein cspE [Yersinia enterocolitica W22703] Length = 50 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 5/49 (10%) Query: 5 GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G +KW+N +GYGFI+P +GS DV++ ++A+A+ +L+EGQ V Sbjct: 6 GRVKWFNQSEGYGFISPHDGSL----DVYVSKTAIANTKNKSLSEGQDV 50 >gi|213691595|ref|YP_002322181.1| putative cold-shock DNA-binding domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|312132324|ref|YP_003999663.1| cspc2 [Bifidobacterium longum subsp. longum BBMN68] gi|213523056|gb|ACJ51803.1| putative cold-shock DNA-binding domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|311773640|gb|ADQ03128.1| CspC2 [Bifidobacterium longum subsp. longum BBMN68] gi|320457683|dbj|BAJ68304.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 129 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 7/69 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G ++W++ KGYGFIT +E G DVFL A+ + G L +G V Y V D Sbjct: 4 GRVRWFDAAKGYGFIT----SEEGKDVFLPAQALPT-GATTLRKGAKVEYSVV--DGRRG 56 Query: 65 YSAENLKLV 73 A +++L+ Sbjct: 57 PQAMDVRLI 65 >gi|289665743|ref|ZP_06487324.1| integral membrane protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289671247|ref|ZP_06492322.1| integral membrane protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 204 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 5/77 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D Sbjct: 1 MRYQGRLSDWNDHKGFGFVTPNG---GGDRAFVHISAFAQQSR-RPRDGEIITYA-IERD 55 Query: 61 ANGKYSAENLKLVPKSS 77 A + +A ++ +++ Sbjct: 56 AQKRLNATQVRWADRTT 72 >gi|3121924|sp|Q46051|CSPA_CITFR RecName: Full=Major cold shock protein gi|3121925|sp|Q46664|CSPA_ENTAE RecName: Full=Major cold shock protein gi|3121930|sp|Q53816|CSPA_SHIBO RecName: Full=Major cold shock protein gi|3121934|sp|Q56178|CSPA_SALVI RecName: Full=Major cold shock protein gi|1402743|gb|AAC80237.1| major cold-shock protein [Citrobacter freundii] gi|1402745|gb|AAC80236.1| major cold-shock protein [Citrobacter freundii] gi|1402747|gb|AAC80238.1| major cold-shock protein [Enterobacter aerogenes] gi|1402749|gb|AAC80239.1| major cold-shock protein [Escherichia coli] gi|1402773|gb|AAC80240.1| major cold-shock protein [Shigella boydii] gi|1402779|gb|AAC80241.1| major cold-shock protein [Shigella flexneri] gi|1402785|gb|AAC80252.1| major cold-shock protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|1402787|gb|AAC80253.1| major cold-shock protein [Salmonella enterica subsp. enterica serovar Virchow] Length = 46 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 3/42 (7%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 DKG+GFITP+ ++ DVF+H SA+ + G +L EGQ V++ Sbjct: 1 DKGFGFITPDDGSK---DVFVHFSAIQNDGYKSLDEGQKVSF 39 >gi|111021931|ref|YP_704903.1| cold shock protein [Rhodococcus jostii RHA1] gi|110821461|gb|ABG96745.1| probable cold shock protein [Rhodococcus jostii RHA1] Length = 136 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF+ S E G+DV++ SA+ G+ L GQ V + A G+ Sbjct: 4 GKVKWYDVEKGFGFL----SQEEGEDVYVRSSALPE-GVEGLKAGQRVEFGM----AAGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|170572609|ref|XP_001892171.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi] gi|158602705|gb|EDP39010.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi] Length = 244 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-----LTEGQLVTYDYVQ 58 +G +KWY+ YGFI + + G+DVF+H++A+A + + L +G+ V +D VQ Sbjct: 7 KGKVKWYSVRYHYGFIARDDN--KGNDVFVHQTAIAKSRIIKYYLRTLGDGEEVLFDIVQ 64 >gi|167946065|ref|ZP_02533139.1| Cold-shock DNA-binding protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 61 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 G++KW++ KGYGFI EG G D+F+H A+ G +L +G Sbjct: 2 GTVKWFDSGKGYGFIEREG----GKDLFVHFRAIVGEGHVSLEDG 42 >gi|19552047|ref|NP_600049.1| cold shock protein [Corynebacterium glutamicum ATCC 13032] gi|145294989|ref|YP_001137810.1| hypothetical protein cgR_0934 [Corynebacterium glutamicum R] gi|21323586|dbj|BAB98213.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032] gi|140844909|dbj|BAF53908.1| hypothetical protein [Corynebacterium glutamicum R] Length = 127 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KWY+ ++G+GF+ S G+D F+ + V G+ L +GQ + +D+ A G+ Sbjct: 4 GTVKWYDAERGFGFV----SNPGGEDCFVGKQ-VLPKGVTELHKGQRIDFDF----AAGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 KGPQALRI 62 >gi|194131839|gb|ACF33225.1| Y-box protein Lyb2 [Lethenteron japonicum] Length = 181 Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 65 GTVKWFNVKNGYGFIN---RNDTKEDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVE 119 >gi|324997476|ref|ZP_08118588.1| cold-shock DNA-binding protein family [Pseudonocardia sp. P1] Length = 128 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KWY+ +KG+GF++ +G G+DV++ ++A+ S G L GQ V + Sbjct: 4 GRVKWYDAEKGFGFLSQDG----GEDVYVRKAALPS-GTEALKSGQRVEF 48 >gi|126340161|ref|XP_001372013.1| PREDICTED: similar to YB2 [Monodelphis domestica] Length = 320 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D V+ + Sbjct: 46 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 102 >gi|268532128|ref|XP_002631192.1| C. briggsae CBR-CEY-1 protein [Caenorhabditis briggsae] gi|187036968|emb|CAP23634.1| CBR-CEY-1 protein [Caenorhabditis briggsae AF16] Length = 202 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 7/59 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 +G++KW+N GYGFI T++ +D+F+H++A+ + L +L + + V +D V+ Sbjct: 22 KGTVKWFNVKNGYGFIN---RTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVE 77 >gi|1402761|gb|AAC80245.1| major cold-shock protein [Lactococcus lactis subsp. cremoris] gi|1402777|gb|AAC80255.1| major cold-shock protein [Staphylococcus epidermidis] Length = 45 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 EKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD 44 >gi|213510928|ref|NP_001133543.1| Y-box-binding protein 2-A [Salmo salar] gi|209154422|gb|ACI33443.1| Y-box-binding protein 2-A [Salmo salar] Length = 328 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 7/59 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D V+ Sbjct: 31 QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVE 86 >gi|62751871|ref|NP_001015855.1| cold shock domain protein A [Xenopus (Silurana) tropicalis] gi|59861901|gb|AAH90361.1| cold shock domain protein A [Xenopus (Silurana) tropicalis] Length = 248 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 7/58 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D V Sbjct: 37 QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVV 91 >gi|93005152|ref|YP_579589.1| cold-shock DNA-binding domain-containing protein [Psychrobacter cryohalolentis K5] gi|92392830|gb|ABE74105.1| cold-shock DNA-binding domain protein [Psychrobacter cryohalolentis K5] Length = 253 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G IK +N DKGYGFI + +E DVF H +V A +++GQ V ++ +ND Sbjct: 3 MQSGKIKHWNSDKGYGFIDVDNQSE---DVFFHIKSVRMAQP--ISKGQRVYFNSERNDK 57 Query: 62 NGKYSAE 68 N + E Sbjct: 58 NQLRATE 64 >gi|296448672|ref|ZP_06890536.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] gi|296253819|gb|EFH00982.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] Length = 195 Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G+IKW++ KGYGF+ P+ + G D+ LH + + +G EG V + Sbjct: 32 GAIKWFDVSKGYGFVVPD---DGGADILLHVTTLRRSGFQTAYEGARVVCE 79 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 +KW+N KG+GF+T T DD+FLH V GL L G V Y Sbjct: 126 VKWFNRVKGFGFLTRGDGT---DDIFLHMETVRRYGLAELKPGDSVLVRY 172 >gi|172041246|ref|YP_001800960.1| putative cold shock protein [Corynebacterium urealyticum DSM 7109] gi|171852550|emb|CAQ05526.1| putative cold shock protein [Corynebacterium urealyticum DSM 7109] Length = 127 Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G ++W++ DKG+GF++ G +DV++ R V G+ L GQ V Y++V Sbjct: 4 GKVRWFDADKGFGFVSNPGE----EDVYVGRQ-VLPEGVTELVPGQRVEYEFV 51 >gi|241813115|ref|XP_002414626.1| Y1 protein, putative [Ixodes scapularis] gi|215508837|gb|EEC18291.1| Y1 protein, putative [Ixodes scapularis] Length = 209 Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 7/64 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT----EGQLVTYDYVQND 60 G+++W+N GYGFI ++ +D+F+H++A+ LT EG+ V +D V ++ Sbjct: 27 GTVQWFNVKNGYGFI---NRNDTREDIFVHQTAITRNHPQKLTRTVSEGETVQFDVVVDE 83 Query: 61 ANGK 64 + Sbjct: 84 ERAR 87 >gi|194131800|gb|ACF33224.1| Y-box protein Lyb3 [Lethenteron japonicum] Length = 171 Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 65 GTVKWFNVKNGYGFIN---RNDTKEDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVE 119 >gi|3831560|gb|AAC70001.1| major cold shock protein [Bifidobacterium animalis] Length = 50 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 4/47 (8%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 KG+GFIT E G DVF+H SA+ G +L +GQ V+Y+ Q+D Sbjct: 1 KGFGFIT----GEDGQDVFVHFSAINGEGYKSLDKGQAVSYNVKQSD 43 >gi|301620236|ref|XP_002939487.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2 [Xenopus (Silurana) tropicalis] gi|301620238|ref|XP_002939488.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3 [Xenopus (Silurana) tropicalis] gi|301620240|ref|XP_002939489.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 4 [Xenopus (Silurana) tropicalis] gi|301620242|ref|XP_002939490.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 5 [Xenopus (Silurana) tropicalis] Length = 153 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K ++ KG+GFITP + G D+FLH S + G + EG VTY Sbjct: 68 VYKGVCKCFSRSKGHGFITP---VDGGPDIFLHISDI--EGEYVPAEGDEVTYKVCTVPP 122 Query: 61 ANGKYSAENLKLV 73 N K+ A +K+ Sbjct: 123 KNEKHQAVEVKIT 135 >gi|226953538|ref|ZP_03824002.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|294649474|ref|ZP_06726898.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194] gi|226835716|gb|EEH68099.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|292824644|gb|EFF83423.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194] Length = 97 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 8/71 (11%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++G +K YNPDKG+GFI G+TE DVF H S SA + V + V+N Sbjct: 6 YQGKVKQYNPDKGFGFI---GTTEG--DVFFHISDFPSAEG-EPKRNEKVKFAVVEN--Q 57 Query: 63 GKYSAENLKLV 73 GK+ A ++ V Sbjct: 58 GKFKAVQIERV 68 >gi|118588945|ref|ZP_01546352.1| putative cold shock transcription regulator protein [Stappia aggregata IAM 12614] gi|118438274|gb|EAV44908.1| putative cold shock transcription regulator protein [Stappia aggregata IAM 12614] Length = 193 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 + ++KW+N KG+GF+T E +D+F+H + G+ L GQ V + + G Sbjct: 119 KATVKWFNRVKGFGFLT---QGEGSEDIFIHMETLRRFGITELRPGQDVLVRFGEG-PKG 174 Query: 64 KYSAE 68 + +AE Sbjct: 175 RMAAE 179 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G+IKW++ KGYGFI P +SGD D+ LH + + G EG V + + Sbjct: 28 GTIKWFDVGKGYGFIVP----DSGDGDILLHVTCLRRDGYQTAYEGARVVCEVL 77 >gi|88798702|ref|ZP_01114285.1| Cold shock protein [Reinekea sp. MED297] gi|88778465|gb|EAR09657.1| Cold shock protein [Reinekea sp. MED297] Length = 87 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KG+GFI + E D+F H S++ G L GQ V ++ V+++ Sbjct: 4 GKVKWFNNAKGFGFIVCDDHKE---DLFAHFSSIQMEGYKTLKAGQDVEFETVKSE 56 >gi|284009214|emb|CBA76294.1| cold shock protein [Arsenophonus nasoniae] Length = 72 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%) Query: 4 RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ ++G+GFITP +GS E VF+H S + + L EGQ V+Y Q Sbjct: 6 HGLVKWFDGNRGFGFITPNDGSKE----VFVHYSEIKNTHYQVLYEGQEVSYTPFQ 57 >gi|255586301|ref|XP_002533802.1| cellular nucleic acid binding protein, putative [Ricinus communis] gi|223526275|gb|EEF28589.1| cellular nucleic acid binding protein, putative [Ricinus communis] Length = 266 Score = 40.8 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 5/65 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDAN 62 RG + ++ KG+GFI P+ + G+D+F+H SA+ S G + +L E +V + +D N Sbjct: 15 RGKVVRFSDRKGFGFIKPD---DGGEDLFVHHSAIKSDGRYRSLAEDDVVEFTVSLSDDN 71 Query: 63 GKYSA 67 KY A Sbjct: 72 -KYQA 75 >gi|126737875|ref|ZP_01753605.1| cold shock DNA-binding domain protein [Roseobacter sp. SK209-2-6] gi|126721268|gb|EBA17972.1| cold shock DNA-binding domain protein [Roseobacter sp. SK209-2-6] Length = 178 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KGYGF+ S G D+ LH + + + G ++ +G + N G Sbjct: 12 QGLVKWFDPAKGYGFVV---SDSGGPDILLHVNVLRNFGQSSVADGTRIEV-VTHNTDRG 67 Query: 64 KYSAENLKLVPKSSN 78 + E L ++P + Sbjct: 68 VQAVEILSILPPERD 82 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF G DVFLH + +GL +L G+ + + + G+ + Sbjct: 108 VKWFNKGKGFGFANVFGRDA---DVFLHVEVLRQSGLADLQPGEALAMRVI-DGKRGQMA 163 Query: 67 AE 68 AE Sbjct: 164 AE 165 >gi|2073111|dbj|BAA19850.1| Y box protein 2 [Carassius auratus] Length = 297 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D V+ Sbjct: 23 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVE 77 >gi|224000840|ref|XP_002290092.1| cold-shock DNA-binding domain-containing protein [Thalassiosira pseudonana CCMP1335] gi|220973514|gb|EED91844.1| cold-shock DNA-binding domain-containing protein [Thalassiosira pseudonana CCMP1335] Length = 72 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 4/58 (6%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 ++ KG+GFI P+ T+ DVF+H++++ G +L E + V + V+ D NG+ A Sbjct: 1 FDTAKGFGFIVPDDGTK---DVFVHQTSIKVEGFRSLAENEAVEF-RVETDTNGRLRA 54 >gi|170031766|ref|XP_001843755.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167870926|gb|EDS34309.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 247 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 7/63 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQND 60 G++KW+N G+GFIT ++G+D+F+H+S++ + + ++ EG++V + + Sbjct: 54 GTVKWFNVKDGFGFIT---RHDTGEDLFVHQSSILRPNSRHSVRSVGEGEVVEFGVIATK 110 Query: 61 ANG 63 G Sbjct: 111 VTG 113 >gi|294664904|ref|ZP_06730221.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605335|gb|EFF48669.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 206 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 5/77 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D Sbjct: 3 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQTR-RPRDGEIITYA-IERD 57 Query: 61 ANGKYSAENLKLVPKSS 77 A+ + +A ++ +++ Sbjct: 58 AHKRLNAAQVRWADRTT 74 >gi|294625429|ref|ZP_06704060.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600252|gb|EFF44358.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 204 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 5/77 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D Sbjct: 1 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQT-RRPRDGEIITYA-IERD 55 Query: 61 ANGKYSAENLKLVPKSS 77 A+ + +A ++ +++ Sbjct: 56 AHKRLNATQVRWAHRTT 72 >gi|83319695|ref|YP_424021.1| cold shock protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|313664918|ref|YP_004046789.1| cold-shock DNA-binding domain protein [Mycoplasma leachii PG50] gi|83283581|gb|ABC01513.1| cold shock protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|312949345|gb|ADR23941.1| cold-shock DNA-binding domain protein [Mycoplasma leachii PG50] Length = 68 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N +KG+GFIT + + DVF++ + + G L +GQ V+Y+ Sbjct: 4 GIVKWFNDEKGFGFITNDSDNK---DVFVYFANINVNGYKTLEQGQKVSYE 51 >gi|21243068|ref|NP_642650.1| integral membrane protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108581|gb|AAM37186.1| integral membrane protein [Xanthomonas axonopodis pv. citri str. 306] Length = 206 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 5/77 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D Sbjct: 3 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQT-RRPRDGEIITYA-IERD 57 Query: 61 ANGKYSAENLKLVPKSS 77 A+ + +A ++ +++ Sbjct: 58 AHKRLNATQVRWADRTT 74 >gi|332842519|ref|XP_001134851.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan troglodytes] Length = 319 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 7/64 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 57 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 113 Query: 61 ANGK 64 K Sbjct: 114 KGAK 117 >gi|119963261|ref|YP_946802.1| cold shock protein [Arthrobacter aurescens TC1] gi|119950120|gb|ABM09031.1| putative cold shock protein [Arthrobacter aurescens TC1] Length = 127 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF+ + E G +VFL ++++ AG+ L G V + A+G+ Sbjct: 4 GKVKWYDKEKGFGFL----AAEDGQEVFLPKTSL-PAGVTELKAGTRVEFGV----ADGR 54 Query: 65 YSAENLKL 72 A+ L L Sbjct: 55 RGAQALGL 62 >gi|29376277|ref|NP_815431.1| cold-shock domain-contain protein [Enterococcus faecalis V583] gi|227518915|ref|ZP_03948964.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis TX0104] gi|227553533|ref|ZP_03983582.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis HH22] gi|229545662|ref|ZP_04434387.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis TX1322] gi|229549854|ref|ZP_04438579.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255972638|ref|ZP_05423224.1| cold shock protein [Enterococcus faecalis T1] gi|256619219|ref|ZP_05476065.1| cold shock protein [Enterococcus faecalis ATCC 4200] gi|256762655|ref|ZP_05503235.1| cold shock protein [Enterococcus faecalis T3] gi|256853281|ref|ZP_05558651.1| cold-shock domain-contain protein [Enterococcus faecalis T8] gi|256959135|ref|ZP_05563306.1| cold shock protein [Enterococcus faecalis DS5] gi|256961771|ref|ZP_05565942.1| cold shock protein [Enterococcus faecalis Merz96] gi|256964969|ref|ZP_05569140.1| cold shock protein [Enterococcus faecalis HIP11704] gi|257079167|ref|ZP_05573528.1| cold shock protein [Enterococcus faecalis JH1] gi|257082397|ref|ZP_05576758.1| cold-shock domain-containing protein [Enterococcus faecalis E1Sol] gi|257085029|ref|ZP_05579390.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1] gi|257087012|ref|ZP_05581373.1| cold shock protein [Enterococcus faecalis D6] gi|257090040|ref|ZP_05584401.1| cold-shock protein [Enterococcus faecalis CH188] gi|257416246|ref|ZP_05593240.1| cold shock protein [Enterococcus faecalis AR01/DG] gi|257419451|ref|ZP_05596445.1| cold-shock protein [Enterococcus faecalis T11] gi|257422457|ref|ZP_05599447.1| cold shock protein [Enterococcus faecalis X98] gi|293383477|ref|ZP_06629390.1| cold-shock domain protein [Enterococcus faecalis R712] gi|293388868|ref|ZP_06633354.1| cold-shock domain protein [Enterococcus faecalis S613] gi|294779384|ref|ZP_06744785.1| major cold shock protein CspA [Enterococcus faecalis PC1.1] gi|300860204|ref|ZP_07106291.1| cold shock protein CspD [Enterococcus faecalis TUSoD Ef11] gi|307269537|ref|ZP_07550876.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|307273064|ref|ZP_07554310.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|307275813|ref|ZP_07556952.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|307289264|ref|ZP_07569220.1| major cold shock protein CspA [Enterococcus faecalis TX0109] gi|307291836|ref|ZP_07571707.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|312901869|ref|ZP_07761134.1| major cold shock protein CspA [Enterococcus faecalis TX0470] gi|312903474|ref|ZP_07762654.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|312907694|ref|ZP_07766685.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512] gi|312910312|ref|ZP_07769159.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516] gi|312951656|ref|ZP_07770551.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|29343740|gb|AAO81501.1| cold-shock domain family protein [Enterococcus faecalis V583] gi|227073604|gb|EEI11567.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis TX0104] gi|227177338|gb|EEI58310.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis HH22] gi|229305123|gb|EEN71119.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|229309230|gb|EEN75217.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis TX1322] gi|255963656|gb|EET96132.1| cold shock protein [Enterococcus faecalis T1] gi|256598746|gb|EEU17922.1| cold shock protein [Enterococcus faecalis ATCC 4200] gi|256683906|gb|EEU23601.1| cold shock protein [Enterococcus faecalis T3] gi|256711740|gb|EEU26778.1| cold-shock domain-contain protein [Enterococcus faecalis T8] gi|256949631|gb|EEU66263.1| cold shock protein [Enterococcus faecalis DS5] gi|256952267|gb|EEU68899.1| cold shock protein [Enterococcus faecalis Merz96] gi|256955465|gb|EEU72097.1| cold shock protein [Enterococcus faecalis HIP11704] gi|256987197|gb|EEU74499.1| cold shock protein [Enterococcus faecalis JH1] gi|256990427|gb|EEU77729.1| cold-shock domain-containing protein [Enterococcus faecalis E1Sol] gi|256993059|gb|EEU80361.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1] gi|256995042|gb|EEU82344.1| cold shock protein [Enterococcus faecalis D6] gi|256998852|gb|EEU85372.1| cold-shock protein [Enterococcus faecalis CH188] gi|257158074|gb|EEU88034.1| cold shock protein [Enterococcus faecalis ARO1/DG] gi|257161279|gb|EEU91239.1| cold-shock protein [Enterococcus faecalis T11] gi|257164281|gb|EEU94241.1| cold shock protein [Enterococcus faecalis X98] gi|291079268|gb|EFE16632.1| cold-shock domain protein [Enterococcus faecalis R712] gi|291081793|gb|EFE18756.1| cold-shock domain protein [Enterococcus faecalis S613] gi|294453513|gb|EFG21914.1| major cold shock protein CspA [Enterococcus faecalis PC1.1] gi|295113106|emb|CBL31743.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76] gi|300849243|gb|EFK76993.1| cold shock protein CspD [Enterococcus faecalis TUSoD Ef11] gi|306497102|gb|EFM66648.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|306499973|gb|EFM69334.1| major cold shock protein CspA [Enterococcus faecalis TX0109] gi|306507505|gb|EFM76636.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|306510049|gb|EFM79073.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|306514157|gb|EFM82733.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|310626722|gb|EFQ10005.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512] gi|310630373|gb|EFQ13656.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|310633350|gb|EFQ16633.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|311289585|gb|EFQ68141.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516] gi|311291062|gb|EFQ69618.1| major cold shock protein CspA [Enterococcus faecalis TX0470] gi|315027882|gb|EFT39814.1| major cold shock protein CspA [Enterococcus faecalis TX2137] gi|315029541|gb|EFT41473.1| major cold shock protein CspA [Enterococcus faecalis TX4000] gi|315032014|gb|EFT43946.1| major cold shock protein CspA [Enterococcus faecalis TX0017] gi|315037138|gb|EFT49070.1| major cold shock protein CspA [Enterococcus faecalis TX0027] gi|315144965|gb|EFT88981.1| major cold shock protein CspA [Enterococcus faecalis TX2141] gi|315147421|gb|EFT91437.1| major cold shock protein CspA [Enterococcus faecalis TX4244] gi|315150754|gb|EFT94770.1| major cold shock protein CspA [Enterococcus faecalis TX0012] gi|315152323|gb|EFT96339.1| major cold shock protein CspA [Enterococcus faecalis TX0031] gi|315156124|gb|EFU00141.1| major cold shock protein CspA [Enterococcus faecalis TX0043] gi|315158234|gb|EFU02251.1| major cold shock protein CspA [Enterococcus faecalis TX0312] gi|315162357|gb|EFU06374.1| major cold shock protein CspA [Enterococcus faecalis TX0645] gi|315163878|gb|EFU07895.1| major cold shock protein CspA [Enterococcus faecalis TX1302] gi|315168876|gb|EFU12893.1| major cold shock protein CspA [Enterococcus faecalis TX1341] gi|315169617|gb|EFU13634.1| major cold shock protein CspA [Enterococcus faecalis TX1342] gi|315172434|gb|EFU16451.1| major cold shock protein CspA [Enterococcus faecalis TX1346] gi|315576063|gb|EFU88254.1| major cold shock protein CspA [Enterococcus faecalis TX0309B] gi|315577830|gb|EFU90021.1| major cold shock protein CspA [Enterococcus faecalis TX0630] gi|315580638|gb|EFU92829.1| major cold shock protein CspA [Enterococcus faecalis TX0309A] gi|323480885|gb|ADX80324.1| cold shock protein CspD [Enterococcus faecalis 62] gi|327535290|gb|AEA94124.1| cold shock protein CspA [Enterococcus faecalis OG1RF] gi|329571878|gb|EGG53556.1| major cold shock protein CspA [Enterococcus faecalis TX1467] Length = 68 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G +KW++ KGYGFI D++F+H +A+ G +L E Q V ++ ++ Sbjct: 1 MQKGIVKWFDNRKGYGFIV----YNEEDEIFVHFTAIEGDGFKSLDENQSVEFEIME 53 >gi|325926682|ref|ZP_08187995.1| putative membrane protein [Xanthomonas perforans 91-118] gi|325542917|gb|EGD14367.1| putative membrane protein [Xanthomonas perforans 91-118] Length = 204 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 5/77 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D Sbjct: 1 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQTR-RPRDGEIITYA-IERD 55 Query: 61 ANGKYSAENLKLVPKSS 77 A+ + +A ++ +++ Sbjct: 56 AHKRLNATQVRWADRTT 72 >gi|300932619|ref|ZP_07147875.1| cold shock protein [Corynebacterium resistens DSM 45100] Length = 127 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KWY+ D+GYGF++ G +DV++ S V G+ L +GQ + Y++V Sbjct: 4 GRVKWYDADRGYGFVSNPGD----EDVYVG-SQVLPDGVDELVKGQRMEYEFV 51 >gi|170761472|ref|YP_001787094.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree] gi|169408461|gb|ACA56872.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree] Length = 69 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 5/60 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60 +H G++KW++ ++GYGFI S +G DV++H + +L EG+ V +D V+ + Sbjct: 3 MHTGTVKWFDNERGYGFI----SGNNGKDVYVHSMQIKEKTHNKDLHEGEEVLFDIVEKE 58 >gi|110763831|ref|XP_393344.3| PREDICTED: hypothetical protein LOC409854 [Apis mellifera] Length = 279 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS----AGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+ + ++ +G++V +D V Sbjct: 26 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVV 79 >gi|82802831|gb|ABB92461.1| rcNSEP1 [Pan troglodytes] Length = 319 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 7/64 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 57 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 113 Query: 61 ANGK 64 K Sbjct: 114 KGAK 117 >gi|119025588|ref|YP_909433.1| cold shock protein [Bifidobacterium adolescentis ATCC 15703] gi|154487048|ref|ZP_02028455.1| hypothetical protein BIFADO_00886 [Bifidobacterium adolescentis L2-32] gi|118765172|dbj|BAF39351.1| cold shock protein [Bifidobacterium adolescentis ATCC 15703] gi|154084911|gb|EDN83956.1| hypothetical protein BIFADO_00886 [Bifidobacterium adolescentis L2-32] Length = 130 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G ++W++ +KGYGFI + ES DDVFL +A+ G+ L +G V Y + Sbjct: 4 GRVRWFDANKGYGFIQ---TGESTDDVFLPAAALPE-GVKTLRKGAKVEYSVI 52 >gi|291224890|ref|XP_002732435.1| PREDICTED: cold shock domain protein A short-like [Saccoglossus kowalevskii] Length = 283 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 26 GTVKWFNVKNGYGFIN---RNDTNEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 80 >gi|213512942|ref|NP_001133216.1| Y-box binding protein-2 [Salmo salar] gi|197632619|gb|ACH71033.1| Y-box binding protein-2 [Salmo salar] Length = 301 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D V+ + Sbjct: 42 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 98 >gi|325286552|ref|YP_004262342.1| cold-shock DNA-binding domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322006|gb|ADY29471.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM 7489] Length = 77 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 6/50 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++K+YN KGYGFIT + E+G D+F+H +++ L EG V Y Sbjct: 17 GTVKFYNDSKGYGFITND---ETGKDIFVHATSLNGV---ELNEGDKVEY 60 >gi|307209281|gb|EFN86372.1| Y-box factor-like protein [Harpegnathos saltator] Length = 278 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+ + ++ +G++V +D V Sbjct: 26 GTVKWFNVKSGYGFIN---RNDTREDVFVHQSAIIKNNPRKAVRSVGDGEVVEFDVV 79 >gi|78048088|ref|YP_364263.1| hypothetical protein XCV2532 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036518|emb|CAJ24209.1| putative membrane protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 204 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 5/77 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D Sbjct: 1 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFARQTR-RPRDGEIITYA-IERD 55 Query: 61 ANGKYSAENLKLVPKSS 77 A+ + +A ++ +++ Sbjct: 56 AHKRLNATQVRWADRTT 72 >gi|1402771|gb|AAC80254.1| major cold-shock protein [Staphylococcus aureus RN4220] gi|1402781|gb|AAC80256.1| major cold-shock protein [Staphylococcus intermedius] Length = 45 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 EKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQAVEFEVVEGD 44 >gi|322806010|emb|CBZ03577.1| cold shock protein CspD [Clostridium botulinum H04402 065] Length = 69 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 5/60 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60 +H G++KW++ ++GYGFI S +G DV++H + +L EG+ V +D V+ + Sbjct: 3 MHTGTVKWFDNERGYGFI----SGNNGKDVYVHSMQIKEKTHNKDLHEGEEVLFDIVEKE 58 >gi|296271245|ref|YP_003653877.1| cold-shock DNA-binding domain-containing protein [Thermobispora bispora DSM 43833] gi|296094032|gb|ADG89984.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM 43833] Length = 131 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KWY+ +KG+GF+T + G +VF+H S+V G+ L GQ V + Sbjct: 4 GKVKWYDAEKGFGFLT----RDDGGEVFVH-SSVLPKGVTALKPGQKVEF 48 >gi|301620234|ref|XP_002939486.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1 [Xenopus (Silurana) tropicalis] Length = 214 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K ++ KG+GFITP + G D+FLH S + G + EG VTY Sbjct: 129 VYKGVCKCFSRSKGHGFITP---VDGGPDIFLHISDI--EGEYVPAEGDEVTYKVCTVPP 183 Query: 61 ANGKYSAENLKL 72 N K+ A +K+ Sbjct: 184 KNEKHQAVEVKI 195 >gi|330993460|ref|ZP_08317395.1| Cold shock-like protein CspA [Gluconacetobacter sp. SXCC-1] gi|329759490|gb|EGG75999.1| Cold shock-like protein CspA [Gluconacetobacter sp. SXCC-1] Length = 49 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Query: 26 ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 + G DVF+H +AV +AGL L E Q V+YD GK +A NLK Sbjct: 4 DGGKDVFVHITAVQAAGLRGLNEDQAVSYDIAME--RGKAAATNLK 47 >gi|295838145|ref|ZP_06825078.1| cold-shock domain family protein [Streptomyces sp. SPB74] gi|295826890|gb|EFG65133.1| cold-shock domain family protein [Streptomyces sp. SPB74] Length = 127 Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H SA+ + L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVHSSALPQ-DVETLKPGQRVEFGVV 51 >gi|293400347|ref|ZP_06644493.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306747|gb|EFE47990.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 65 Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G +K +N +KGYGFIT E G DVF H S + G + V ++ V+ + Sbjct: 2 QGKVKMFNQEKGYGFIT----LEDGRDVFFHYSQLMMEGFKTIDADAKVEFELVETE 54 >gi|78186480|ref|YP_374523.1| cold-shock DNA-binding domain-containing protein [Chlorobium luteolum DSM 273] gi|78166382|gb|ABB23480.1| cold-shock DNA-binding protein family [Chlorobium luteolum DSM 273] Length = 89 Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 4 RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 R +KW++ KGYGFI PEG G+D+F+H SA+ S F + Q D+ + Sbjct: 3 RSKVKWFDGKKGYGFILHPEG----GEDIFVHFSAIESDQPFKVL-NQDADVDFEIDTTQ 57 Query: 63 GKYSAENLK 71 A+N++ Sbjct: 58 KGLQAKNVR 66 >gi|319953293|ref|YP_004164560.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] gi|319421953|gb|ADV49062.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] Length = 64 Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 6/51 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++K+YN KGYGFIT + +G D+F+H +++ A L EG V Y+ Sbjct: 3 GTVKFYNGSKGYGFITND---NTGKDIFVHATSLNGA---ELNEGDQVEYE 47 >gi|296118317|ref|ZP_06836898.1| cold-shock domain protein [Corynebacterium ammoniagenes DSM 20306] gi|295968875|gb|EFG82119.1| cold-shock domain protein [Corynebacterium ammoniagenes DSM 20306] Length = 127 Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KG+GF++ G +DV++ R+ V G+ L +GQ + +D+ A G+ Sbjct: 4 GKVKWFDAEKGFGFVSNPGD----EDVYVGRN-VLPEGVEELVQGQRIEFDF----AAGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 RGPQALRV 62 >gi|163839253|ref|YP_001623658.1| cold shock protein [Renibacterium salmoninarum ATCC 33209] gi|162952729|gb|ABY22244.1| cold shock protein [Renibacterium salmoninarum ATCC 33209] Length = 119 Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 9/66 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ DKG+GF+T ++ G +VFLH +A+ AG+ + G + + A+GK Sbjct: 4 GKVKWFDNDKGFGFLT----SDEGQEVFLHANAL-PAGVKEIKVGTRMEFGV----ADGK 54 Query: 65 YSAENL 70 A+ L Sbjct: 55 KGAQAL 60 >gi|322511335|gb|ADX06644.1| putative cold-shock protein CspD [Organic Lake phycodnavirus] Length = 88 Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+ E+G + F H S + + G L G+ V+ + + D N K Sbjct: 4 VKWFNKRKGFGFVL----DETGTEYFCHHSDICNDGYKYLRAGEYVSGEVINMDGNKKKL 59 Query: 67 AENLKLVP 74 ++ VP Sbjct: 60 SKICPPVP 67 >gi|313214830|emb|CBY41075.1| unnamed protein product [Oikopleura dioica] gi|313231198|emb|CBY08313.1| unnamed protein product [Oikopleura dioica] Length = 292 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 GS+KW+N GYGFI + + E DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 43 GSVKWFNVRNGYGFIHRDDTDE---DVFVHQTAIVKNNPKKFLRSVGDGEKVVFDVVE 97 >gi|313126739|ref|YP_004037009.1| cold-shock DNA-binding protein family [Halogeometricum borinquense DSM 11551] gi|312293104|gb|ADQ67564.1| cold-shock DNA-binding protein family [Halogeometricum borinquense DSM 11551] Length = 64 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 8/68 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++ ++N GYGFI E S E DVF H V +L EGQ V +D Q D Sbjct: 3 KGTVAFFNDTGGYGFIESEDSDE---DVFFHMEDVGGP---DLEEGQEVEFDIEQADKGP 56 Query: 64 KYSAENLK 71 + A+NL+ Sbjct: 57 R--AKNLQ 62 >gi|163750506|ref|ZP_02157745.1| cold shock domain family protein [Shewanella benthica KT99] gi|161329827|gb|EDQ00815.1| cold shock domain family protein [Shewanella benthica KT99] Length = 198 Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 ++W N DKG+GFI PE T +G DVF+H S + + G + Y Q A+GK+ Sbjct: 9 VRWKN-DKGFGFIEPE--TANGKDVFIHISELKHMARKPIV-GDSIEY-RTQQQADGKFK 63 Query: 67 AENLKL 72 A N + Sbjct: 64 AINASI 69 >gi|91217017|ref|ZP_01253980.1| cold shock protein [Psychroflexus torquis ATCC 700755] gi|91184888|gb|EAS71268.1| cold shock protein [Psychroflexus torquis ATCC 700755] Length = 63 Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K++N KGYGFIT + E+G+D+F+H + + +L EG V Y+ + + Sbjct: 2 QGKVKFFNESKGYGFITND---ETGEDIFVHVTGLNGE---SLNEGDEVEYN--EEEGRK 53 Query: 64 KYSAENLKLV 73 +A +++L+ Sbjct: 54 GMNASDVRLI 63 >gi|3821915|gb|AAC69699.1| major cold shock protein [Lactococcus lactis subsp. cremoris] gi|3821919|gb|AAC69701.1| major cold shock protein [Lactococcus lactis subsp. cremoris] Length = 50 Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 4/42 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 KG+GFIT +E G D+F H SA+ S G L EGQ V +D Sbjct: 1 KGFGFIT----SEEGKDLFAHFSAIQSDGFKTLDEGQKVEFD 38 >gi|302520002|ref|ZP_07272344.1| cold shock protein B [Streptomyces sp. SPB78] gi|318061816|ref|ZP_07980537.1| putative cold shock protein [Streptomyces sp. SA3_actG] gi|318079283|ref|ZP_07986615.1| putative cold shock protein [Streptomyces sp. SA3_actF] gi|302428897|gb|EFL00713.1| cold shock protein B [Streptomyces sp. SPB78] Length = 127 Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N +KG+GF+ S + G DVF+H SA+ + L GQ V + V Sbjct: 4 GKVKWFNSEKGFGFL----SRDDGGDVFVHSSALPQ-DVETLKPGQRVEFGVV 51 >gi|14270383|emb|CAC39436.1| cold-shock domain protein [Oryzias latipes] Length = 366 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 7/59 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D ++ Sbjct: 4 QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIE 59 >gi|1402765|gb|AAC80248.1| major cold-shock protein [Pediococcus pentosaceus] Length = 45 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 EKGFGFIEVEGE----NDVFVHVSAINQDGYKSLEEGQSVEFEVVEGD 44 >gi|293396764|ref|ZP_06641040.1| cold shock protein [Serratia odorifera DSM 4582] gi|291421028|gb|EFE94281.1| cold shock protein [Serratia odorifera DSM 4582] Length = 73 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 ++ G +KWY+ +GYG I+P + D++++ R A+A+ +L EGQ V + Sbjct: 6 VLKMGRVKWYDQAEGYGVISP---VDGSDEIYVSRRAIANTKNKSLNEGQNVEF 56 >gi|1083796|pir||S48055 RYB-a protein - rat Length = 291 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 84 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGE 140 >gi|296277238|ref|ZP_06859745.1| cold shock protein [Staphylococcus aureus subsp. aureus MR1] Length = 55 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 4/46 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KG+GFI E+G DVF+H S +AS G L EGQ VT++ + Sbjct: 1 EKGFGFI----EQENGGDVFVHFSGIASDGYKTLEEGQKVTFEITE 42 >gi|254469479|ref|ZP_05082884.1| cold shock protein [Pseudovibrio sp. JE062] gi|211961314|gb|EEA96509.1| cold shock protein [Pseudovibrio sp. JE062] Length = 193 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW+N KG+GF+T E +D+F+H + G+ L GQ V + + GK Sbjct: 121 EVKWFNRVKGFGFLT---RGEGTEDIFIHMETLRRFGITELRPGQKVQVRF-GDGPKGKM 176 Query: 66 SAE 68 +AE Sbjct: 177 AAE 179 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IKW++ KGYGF+ PE + DV LH + + G EG V + V N G Sbjct: 28 GTIKWFDIGKGYGFVEPE---DDLPDVLLHVTCLRRDGYQTAYEGARVVCE-VLNRPRGL 83 Query: 65 YSAENLKL 72 + L + Sbjct: 84 QAMRILSM 91 >gi|220911683|ref|YP_002486992.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|219858561|gb|ACL38903.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] Length = 127 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ DKG+GF+ + E G +VFL +S++ G+ L G V + A+G+ Sbjct: 4 GKVKWYDKDKGFGFL----AGEDGQEVFLPKSSLPE-GVTELKAGTRVEFGV----ADGR 54 Query: 65 YSAENLKL 72 A+ L L Sbjct: 55 KGAQALGL 62 >gi|167461595|ref|ZP_02326684.1| putative cold-shock DNA-binding domain protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 59 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 N +KG+GFI E G+DVF+H S++ G +L EGQ V ++ Q N AEN+ Sbjct: 1 NAEKGFGFI----EIEQGNDVFVHFSSIEGDGYKSLDEGQRVQFNVTQ--GNRGPQAENV 54 Query: 71 KLV 73 V Sbjct: 55 SKV 57 >gi|219130830|ref|XP_002185558.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402966|gb|EEC42923.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 297 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 4/34 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSA 37 G +K+Y DKGYGFIT +G +GD D+FLHR+A Sbjct: 35 GKVKFYLRDKGYGFITADG---AGDGDIFLHRTA 65 >gi|505133|dbj|BAA05907.1| RYB-a [Rattus norvegicus] Length = 291 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 84 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGE 140 >gi|161612267|gb|AAI55915.1| FRGY2 protein [Xenopus laevis] Length = 342 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 43 QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99 Query: 60 D 60 + Sbjct: 100 E 100 >gi|532211|gb|AAC34193.1| Y-box binding protein [Mus musculus] Length = 274 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 71 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 127 >gi|116669355|ref|YP_830288.1| cold-shock DNA-binding protein family protein [Arthrobacter sp. FB24] gi|116609464|gb|ABK02188.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24] Length = 127 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF+ + E G +VFL +SA+ G+ L G V + A+G+ Sbjct: 4 GKVKWYDKEKGFGFL----AGEDGQEVFLPKSALPE-GVTELKAGTRVEFGV----ADGR 54 Query: 65 YSAENLKL 72 A+ L L Sbjct: 55 KGAQALGL 62 >gi|289641675|ref|ZP_06473835.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] gi|289508544|gb|EFD29483.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] Length = 131 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ DKG+GF+ S + G DVF+H++A+ G+ L G V + Sbjct: 4 GRVKWFDVDKGFGFL----SRDDGGDVFVHKAAL-PPGVDRLKPGDRVEF 48 >gi|146197784|dbj|BAF57611.1| Y-Box factor protein [Dugesia japonica] Length = 178 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 6/57 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYDYVQ 58 G +KWYN KGYGFI + E DVF+H+SA++ +L E + V +D V+ Sbjct: 5 GKVKWYNVKKGYGFIHRDDVDE---DVFVHQSAISRCQPGKQKSLGEDEDVLFDVVK 58 >gi|1402735|gb|AAC80235.1| major cold-shock protein [Bacillus atrophaeus] Length = 45 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 4/45 (8%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 KG GFI E+GDDVF+H SA+ G +L EG+ V++D Q Sbjct: 2 KGSGFI----EREAGDDVFVHFSAIQGEGFKSLEEGESVSFDVEQ 42 >gi|51245919|ref|YP_065803.1| hypothetical protein DP2067 [Desulfotalea psychrophila LSv54] gi|50876956|emb|CAG36796.1| hypothetical cold-shock protein [Desulfotalea psychrophila LSv54] Length = 204 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IK +N +KGYGFITP+ G+DVFLH A GQ+++Y D G+ Sbjct: 4 GTIKHWNDEKGYGFITPD---NGGNDVFLHIKAFKKRP-HRPEIGQVISYGTTSGD-KGR 58 Query: 65 YSAENLKLVPKSSN 78 A N++ + S+ Sbjct: 59 LRACNVQYMEDKSS 72 >gi|157369959|ref|YP_001477948.1| cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] gi|157321723|gb|ABV40820.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] Length = 73 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 ++ G +KW++ GYGFI+P + D++++ R ++A+ +L EGQ V + Sbjct: 6 VLQMGRVKWFDQAAGYGFISP---VDGSDEIYVSRRSIANTKNKSLNEGQNVEF 56 >gi|1160331|dbj|BAA03376.1| dbpA murine homologue [Mus musculus] Length = 308 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 >gi|227356797|ref|ZP_03841182.1| cold shock protein Csp [Proteus mirabilis ATCC 29906] gi|227163087|gb|EEI48022.1| cold shock protein Csp [Proteus mirabilis ATCC 29906] Length = 88 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 3/60 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ +KGYG I + + D+++++ A+A+ LTEGQ V + ++ A Sbjct: 22 LRMGRVKWFDNNKGYGLIVAKDLEQ---DIYVNKKAIANTKNKALTEGQDVEFSVIKTAA 78 >gi|148255425|ref|YP_001240010.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp. BTAi1] gi|146407598|gb|ABQ36104.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1] Length = 217 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V Y Sbjct: 142 LERAQVKWFNRLRGFGFVT---CGEGTPDIFVHMETLRRFGMTELRPGQWVLVRY 193 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KGYGFI P+ DV LH + + G EG + + VQ Sbjct: 53 GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVVECVQR 104 >gi|327272546|ref|XP_003221045.1| PREDICTED: cold shock domain-containing protein C2-like [Anolis carolinensis] Length = 153 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE TE D+F+H S + G + EG +VTY Sbjct: 68 VFKGVCKQFSRSQGHGFITPENGTE---DIFVHVSDI--EGEYVPVEGDVVTYKICPIPP 122 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 123 KNQKFQAVEVVL 134 >gi|326912755|ref|XP_003202712.1| PREDICTED: nuclease-sensitive element-binding protein 1-like [Meleagris gallopavo] Length = 253 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 45 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 101 >gi|313221374|emb|CBY32128.1| unnamed protein product [Oikopleura dioica] gi|313241319|emb|CBY33595.1| unnamed protein product [Oikopleura dioica] Length = 270 Score = 40.4 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 10/60 (16%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG------LFNLTEGQLVTYDYVQ 58 G++KW+N +G+GFI + G DVFLH+S V +G LF L G+ V +D Q Sbjct: 87 GTVKWFNISRGFGFIE---RNDGGADVFLHQSGVVGSGRRHRFSLF-LKGGEEVEFDVAQ 142 >gi|33875177|gb|AAH00064.1| YBX1 protein [Homo sapiens] gi|47939143|gb|AAH72014.1| YBX1 protein [Homo sapiens] Length = 266 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 >gi|255084065|ref|XP_002508607.1| predicted protein [Micromonas sp. RCC299] gi|226523884|gb|ACO69865.1| predicted protein [Micromonas sp. RCC299] Length = 303 Score = 40.4 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 6/61 (9%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 +NP +G+GFITP+ + G+D+F H S++ + N EG V YD +D GK AE Sbjct: 81 WNP-RGFGFITPD---QGGEDLFCHFSSITDGNMLN--EGARVEYDESFDDRKGKPRAER 134 Query: 70 L 70 + Sbjct: 135 V 135 >gi|212716929|ref|ZP_03325057.1| hypothetical protein BIFCAT_01873 [Bifidobacterium catenulatum DSM 16992] gi|225352748|ref|ZP_03743771.1| hypothetical protein BIFPSEUDO_04378 [Bifidobacterium pseudocatenulatum DSM 20438] gi|212660214|gb|EEB20789.1| hypothetical protein BIFCAT_01873 [Bifidobacterium catenulatum DSM 16992] gi|225156355|gb|EEG69924.1| hypothetical protein BIFPSEUDO_04378 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 129 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G ++W++ +KGYGFI E G DVFL +A+ G+ L +G V Y V+ Sbjct: 4 GRVRWFDANKGYGFI----QNEQGADVFLPAAALPE-GVKTLRKGAKVEYSVVE 52 >gi|146340625|ref|YP_001205673.1| putative DNA binding cold shock protein, CspA-like [Bradyrhizobium sp. ORS278] gi|146193431|emb|CAL77447.1| Putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium sp. ORS278] Length = 217 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V Y Sbjct: 142 LERAQVKWFNRLRGFGFVT---CGEGTPDIFVHMETLRRFGMTELRPGQWVLVRY 193 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KGYGFI P+ DV LH + + G EG + + VQ Sbjct: 53 GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVVECVQR 104 >gi|302532749|ref|ZP_07285091.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302441644|gb|EFL13460.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 71 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50 G++KW+N +KG+GFI+ + + G DVF+H S + G F G+ Sbjct: 4 GTVKWFNSEKGFGFISQD---DGGPDVFVHFSPIPGDGAFKSPGGE 46 >gi|38142418|dbj|BAC99313.2| brain Y-box binding protein 1 [Rattus norvegicus] Length = 322 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEEE 115 >gi|330448523|ref|ZP_08312171.1| 'Cold-shock' DNA-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492714|dbj|GAA06668.1| 'Cold-shock' DNA-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 204 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39 M +G I +N KG+GFI+P+ GDDVF H SA+A Sbjct: 1 MTQKGKIISWNQQKGFGFISPD---NGGDDVFFHVSALA 36 >gi|227548331|ref|ZP_03978380.1| cold shock protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079649|gb|EEI17612.1| cold shock protein [Corynebacterium lipophiloflavum DSM 44291] Length = 127 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ DKG+GF S +DVF+ + V G+ L GQ + +D+ A G+ Sbjct: 4 GKVKWYDADKGFGF----ASNPGDEDVFVGKK-VLPEGVEELVAGQRIEFDF----AAGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 RGPQALRV 62 >gi|170728619|ref|YP_001762645.1| cold-shock DNA-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169813966|gb|ACA88550.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC 51908] Length = 206 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 10/57 (17%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH--------RSAVASAGLFNLTEGQ 50 + RG++ +N +KG+GFI PE T +G DVF+H R V G+ LTE Q Sbjct: 1 MERGTLVRWNDEKGFGFIKPE--TGNGKDVFIHISALKHMARKPVIGDGILFLTEQQ 55 >gi|988281|gb|AAA75475.1| mYB-1a [Mus musculus] Length = 322 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 59 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 113 >gi|148231227|ref|NP_001080330.1| B box-binding protein [Xenopus laevis] gi|140247|sp|Q00436|YB3_XENLA RecName: Full=B box-binding protein; AltName: Full=Protein YB3 gi|65271|emb|CAA42778.1| YB3 [Xenopus laevis] Length = 305 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 39 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95 >gi|326932610|ref|XP_003212408.1| PREDICTED: nuclease-sensitive element-binding protein 1-like, partial [Meleagris gallopavo] Length = 134 Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 6 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 62 >gi|62859889|ref|NP_001016677.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis] gi|89267862|emb|CAJ82694.1| Nuclease sensitive element binding protein 1 [Xenopus (Silurana) tropicalis] gi|89268717|emb|CAJ83277.1| Nuclease sensitive element binding protein 1 [Xenopus (Silurana) tropicalis] gi|213624244|gb|AAI70833.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis] gi|213625546|gb|AAI70835.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis] Length = 306 Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 39 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95 >gi|301784071|ref|XP_002927454.1| PREDICTED: hypothetical protein LOC100472801 [Ailuropoda melanoleuca] Length = 371 Score = 40.4 bits (93), Expect = 0.093, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 62 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118 >gi|298248814|ref|ZP_06972619.1| cold-shock DNA-binding domain protein [Ktedonobacter racemifer DSM 44963] gi|297551473|gb|EFH85339.1| cold-shock DNA-binding domain protein [Ktedonobacter racemifer DSM 44963] Length = 278 Score = 40.4 bits (93), Expect = 0.093, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G ++W++P+ G G I E E+G+++F H +A+ G + G V ++ V+ A Sbjct: 210 IAQGVVRWFDPNAGIGIIVRE---EAGEEIFFHFTALPGQGYRTIRAGVPVQFEIVEGRA 266 Query: 62 NGKYSAENLKLV 73 +A N++ + Sbjct: 267 G--LAARNIQQI 276 >gi|217976738|ref|YP_002360885.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] gi|217502114|gb|ACK49523.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] Length = 189 Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KGYGFITP+ + G DV LH + + G EG + + + Sbjct: 28 GEIKWFDVAKGYGFITPD---DGGPDVLLHVTILRRDGYAAAHEGARIVCEAARR 79 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50 +KW+N KG+GF+T TE D+F+H + G+ L G+ Sbjct: 120 VKWFNRMKGFGFLTRGDGTE---DIFIHMETLRHYGIGELRPGE 160 >gi|116283293|gb|AAH18393.1| YBX1 protein [Homo sapiens] Length = 267 Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 >gi|2502064|gb|AAB80761.1| Y-box binding protein A [Columba livia] Length = 278 Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 70 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQAAIKKNNPRKYLRSVGDGETVEFDVVEGE 126 >gi|158934472|emb|CAL64870.1| putative RlYB2 protein [Rana lessonae] Length = 327 Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 37 QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 93 Query: 60 D 60 + Sbjct: 94 E 94 >gi|55820885|ref|YP_139327.1| cold shock protein A [Streptococcus thermophilus LMG 18311] gi|55736870|gb|AAV60512.1| cold shock protein A [Streptococcus thermophilus LMG 18311] Length = 69 Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G+I W+N DKG GFI + DVF + ++ EGQ VT+D ++ + Sbjct: 4 MNKGTINWFNADKGCGFIMADDMQ----DVFAYLISIQGNDFKKYDEGQKVTFD-IKMTS 58 Query: 62 NGKYSA 67 G+Y + Sbjct: 59 RGRYDS 64 >gi|158312011|ref|YP_001504519.1| cold-shock DNA-binding domain-containing protein [Frankia sp. EAN1pec] gi|158107416|gb|ABW09613.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec] Length = 132 Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 6/51 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTY 54 G +KW++ D+G+GF+ S + GD DVF+H++A+ S G+ L G V + Sbjct: 4 GKVKWFDVDRGFGFL----SRDDGDADVFVHKAALPS-GVDRLKPGDRVEF 49 >gi|331009020|gb|EGH89076.1| cold shock domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 53 Score = 40.0 bits (92), Expect = 0.095, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 1 FGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQ 39 >gi|159162382|pdb|1H95|A Chain A, Solution Structure Of The Single-Stranded Dna-Binding Cold Shock Domain (Csd) Of Human Y-Box Protein 1 (Yb1) Determined By Nmr (10 Lowest Energy Structures) Length = 79 Score = 40.0 bits (92), Expect = 0.096, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 11 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 67 >gi|237805445|ref|ZP_04592149.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026552|gb|EGI06607.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 31 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 16/31 (51%), Positives = 24/31 (77%), Gaps = 4/31 (12%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFL 33 G++KW+N +KG+GFITP +SGDD+F+ Sbjct: 5 QTGTVKWFNDEKGFGFITP----QSGDDLFV 31 >gi|51494815|gb|AAH27785.1| Csda protein [Mus musculus] Length = 299 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 >gi|295136384|ref|YP_003587060.1| cold shock protein [Zunongwangia profunda SM-A87] gi|294984399|gb|ADF54864.1| cold shock protein [Zunongwangia profunda SM-A87] Length = 64 Score = 40.0 bits (92), Expect = 0.098, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KGYGFIT + ++G D+F+H + + L EG V +YV+ + Sbjct: 3 GTVKFFNESKGYGFITND---DTGRDIFVHVTGIDGE---TLNEGDKV--EYVEKEGRKG 54 Query: 65 YSAENLKLV 73 +A+ ++++ Sbjct: 55 LNADQVRVI 63 >gi|110598176|ref|ZP_01386453.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] gi|110340190|gb|EAT58688.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] Length = 72 Score = 40.0 bits (92), Expect = 0.098, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 4 RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + +KW++ KGYGFI P+G G+D+F+H S + S F Q D+ +D+ Sbjct: 3 KSVVKWFDGKKGYGFIVNPDG----GEDIFVHYSTIDSVHRFKFL-NQDAEVDFELDDSK 57 Query: 63 GKYSAENLKLVPKSS 77 + A +K + +S Sbjct: 58 QRLQARYVKEISIAS 72 >gi|194333568|ref|YP_002015428.1| cold-shock DNA-binding domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194311386|gb|ACF45781.1| cold-shock DNA-binding domain protein [Prosthecochloris aestuarii DSM 271] Length = 95 Score = 40.0 bits (92), Expect = 0.098, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 5/47 (10%) Query: 1 MVHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNL 46 M + +KW++ KGYGFI PEG G+D+F+H SA+ S F + Sbjct: 1 MPIKSKVKWFDGKKGYGFILNPEG----GEDIFVHFSAIVSDLTFKV 43 >gi|308153249|ref|NP_001015806.2| protein lin-28 homolog A isoform 1 [Xenopus (Silurana) tropicalis] Length = 188 Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGS-TESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF+T EG+ E+ DVF+H+S + G +L EG+ V + + Sbjct: 29 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTF 84 >gi|300710595|ref|YP_003736409.1| cold shock protein [Halalkalicoccus jeotgali B3] gi|299124278|gb|ADJ14617.1| cold shock protein [Halalkalicoccus jeotgali B3] Length = 64 Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++ ++N GYGFI E S E DVF H V +L EGQ V +D Q D Sbjct: 3 KGTVDFFNDTGGYGFIDSEDSEE---DVFFHMEDVGGP---DLEEGQEVEFDIEQAD 53 >gi|110667820|ref|YP_657631.1| cold shock protein [Haloquadratum walsbyi DSM 16790] gi|109625567|emb|CAJ51994.1| probable cold shock protein [Haloquadratum walsbyi DSM 16790] Length = 64 Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++ ++N GYGFI E S E DVF H V +L EGQ V +D Q D Sbjct: 3 KGTVAFFNDTGGYGFIESEDSEE---DVFFHMEDVGGP---DLEEGQEVEFDIEQAD 53 >gi|27503841|gb|AAH42217.1| Nsep1 protein [Xenopus laevis] Length = 304 Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 39 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95 >gi|73909033|gb|AAI03638.1| Ybx1 protein [Rattus norvegicus] Length = 326 Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 >gi|62858881|ref|NP_001016266.1| protein lin-28 homolog A isoform 2 [Xenopus (Silurana) tropicalis] gi|82230981|sp|Q5EB47|LN28A_XENTR RecName: Full=Protein lin-28 homolog A; Short=Lin-28A gi|59809410|gb|AAH90084.1| lin-28 homolog [Xenopus (Silurana) tropicalis] gi|89266719|emb|CAJ82571.1| lin-28 homolog (C. elegans) [Xenopus (Silurana) tropicalis] gi|195539672|gb|AAI68066.1| lin-28 homolog (C. elegans) [Xenopus (Silurana) tropicalis] Length = 195 Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGS-TESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF+T EG+ E+ DVF+H+S + G +L EG+ V + + Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTF 91 >gi|156385226|ref|XP_001633532.1| predicted protein [Nematostella vectensis] gi|156220603|gb|EDO41469.1| predicted protein [Nematostella vectensis] Length = 98 Score = 40.0 bits (92), Expect = 0.100, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57 G++KW+N GYGFI + + E D+F+H++A+A L ++ +G++V ++ V Sbjct: 10 GTVKWFNVKNGYGFINRDDNKE---DIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVV 63 >gi|55451|emb|CAA40847.1| Y box-binbing protein [Mus musculus] Length = 321 Score = 40.0 bits (92), Expect = 0.100, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 58 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114 >gi|189299|gb|AAA59949.1| DNA-binding protein [Homo sapiens] Length = 320 Score = 40.0 bits (92), Expect = 0.100, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 58 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114 >gi|147902111|ref|NP_001081274.1| Y-box-binding protein 2-A [Xenopus laevis] gi|288558836|sp|P21574|YBX2A_XENLA RecName: Full=Y-box-binding protein 2-A; AltName: Full=Cytoplasmic RNA-binding protein p56; AltName: Full=Frog Y-box protein 2; Short=FRG Y2; AltName: Full=Frog Y-box protein 2-A; Short=FRGY2a; AltName: Full=Messenger ribonucleoprotein particle 4; Short=mRNP4 gi|214157|gb|AAA49716.1| DNA-binding protein [Xenopus laevis] gi|213623410|gb|AAI69706.1| Sequence -specific binding protein [Xenopus laevis] gi|213625048|gb|AAI69704.1| Sequence -specific binding protein [Xenopus laevis] Length = 336 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 43 QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99 Query: 60 D 60 + Sbjct: 100 E 100 >gi|45383329|ref|NP_989745.1| nuclease-sensitive element-binding protein 1 [Gallus gallus] gi|516701|dbj|BAA05380.1| unnamed protein product [Gallus gallus] Length = 326 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 >gi|301789934|ref|XP_002930376.1| PREDICTED: DNA-binding protein A-like [Ailuropoda melanoleuca] Length = 335 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 58 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114 >gi|147903761|ref|NP_001079367.1| nuclease-sensitive element-binding protein 1 [Xenopus laevis] gi|27370848|gb|AAH41191.1| Ybx1 protein [Xenopus laevis] gi|76779926|gb|AAI06324.1| Ybx1 protein [Xenopus laevis] Length = 303 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 39 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 93 >gi|20806532|ref|NP_035863.1| DNA-binding protein A short isoform [Mus musculus] gi|10185725|gb|AAG14419.1|AF248547_1 Y-box protein 3 short isoform [Mus musculus] gi|38382730|gb|AAH62377.1| Cold shock domain protein A [Mus musculus] Length = 292 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 >gi|332884046|gb|EGK04326.1| hypothetical protein HMPREF9456_01354 [Dysgonomonas mossii DSM 22836] Length = 151 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 7/51 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G ++++N DKGYGFI GSTE F H S+ L + EG +VT++ Sbjct: 86 GRVEYFNQDKGYGFIKHTGSTEK---YFFH----VSSTLVPIEEGNMVTFE 129 >gi|319955388|ref|YP_004166655.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] gi|319424048|gb|ADV51157.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] Length = 63 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFIT EG + D F+H S + + EG +V +D + N Sbjct: 3 KGTVKFFNDAKGFGFITEEGVEK---DHFVHISGLID----EVREGDVVEFDL--QEGNK 53 Query: 64 KYSAENLKLV 73 +A N+K++ Sbjct: 54 GLNAVNVKVI 63 >gi|147903687|ref|NP_001080918.1| protein lin-28 homolog A [Xenopus laevis] gi|82243501|sp|Q8JHC4|LN28A_XENLA RecName: Full=Protein lin-28 homolog A; Short=Lin-28A gi|21842301|gb|AAM77750.1|AF521098_1 RNA-binding protein LIN-28A [Xenopus laevis] gi|213623350|gb|AAI69625.1| RNA-binding protein LIN-28A [Xenopus laevis] gi|213626540|gb|AAI69597.1| RNA-binding protein LIN-28A [Xenopus laevis] Length = 195 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGS-TESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF+T EG+ E+ DVF+H+S + G +L EG+ V + + Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPLDVFVHQSKLHMEGFRSLKEGESVEFTF 91 >gi|332812662|ref|XP_001136258.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan troglodytes] Length = 325 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 62 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118 >gi|262201217|ref|YP_003272425.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] gi|262084564|gb|ACY20532.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] Length = 155 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V G +KWY+ +KG+GF+ + E G+DV++ SA+ G+ L GQ V + Sbjct: 19 VPTGKVKWYDAEKGFGFL----AQEDGEDVYVRSSALPD-GVEGLKPGQRVEF 66 >gi|109095654|ref|XP_001118505.1| PREDICTED: DNA-binding protein A-like [Macaca mulatta] Length = 407 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 128 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 184 >gi|72008824|ref|XP_785816.1| PREDICTED: similar to Y-Box factor [Strongylocentrotus purpuratus] gi|115974523|ref|XP_001178393.1| PREDICTED: similar to Y-Box factor [Strongylocentrotus purpuratus] Length = 326 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G++KW+N GYGFI + + E DVF+H+SA+ ++ +G++V +D V+ Sbjct: 26 GTVKWFNVKNGYGFINRDDTKE---DVFVHQSAIVRNNPRKYQRSVGDGEVVEFDVVE 80 >gi|224080514|ref|XP_002194901.1| PREDICTED: Y box binding protein 1 [Taeniopygia guttata] Length = 324 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 58 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114 >gi|340419|gb|AAA61308.1| Y box binding protein-1 [Homo sapiens] Length = 317 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 >gi|140245|sp|P21573|YBOX1_XENLA RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1 gi|214155|gb|AAA49715.1| DNA-binding protein [Xenopus laevis] Length = 303 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 39 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 93 >gi|88802865|ref|ZP_01118392.1| cold shock protein [Polaribacter irgensii 23-P] gi|88781723|gb|EAR12901.1| cold shock protein [Polaribacter irgensii 23-P] Length = 63 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFIT EG + D F+H S + + EG V +D + N Sbjct: 3 KGTVKFFNESKGFGFITEEGVDK---DHFVHISGLVD----EIREGDQVEFDL--QEGNK 53 Query: 64 KYSAENLKLV 73 +A N+K++ Sbjct: 54 GLNAVNVKVI 63 >gi|1353778|gb|AAB01787.1| Y-Box binding protein [Columba livia] Length = 287 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 24 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 80 >gi|72170454|ref|XP_792032.1| PREDICTED: similar to ENSANGP00000011455 [Strongylocentrotus purpuratus] gi|115937083|ref|XP_001186027.1| PREDICTED: similar to ENSANGP00000011455 [Strongylocentrotus purpuratus] Length = 234 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 ++RG KW++ K YGF+TP+ + DVF+H+ + G +L + V Y + Sbjct: 62 LYRGKCKWFSLAKCYGFLTPD---DGSGDVFVHQRVIKMVGYRSLDTNEEVEYKF 113 >gi|457262|gb|AAA36569.1| nuclease sensitive element binding protein-1 [Homo sapiens] Length = 322 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 60 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 116 >gi|259419058|ref|ZP_05742975.1| cold-shock DNA-binding protein family [Silicibacter sp. TrichCH4B] gi|259345280|gb|EEW57134.1| cold-shock DNA-binding protein family [Silicibacter sp. TrichCH4B] Length = 180 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 6/54 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG---QLVTY 54 RG +KW++P KGYGFI ++G D+ LH + + + G ++ +G ++VT+ Sbjct: 12 RGLVKWFDPAKGYGFIV---CPDNGPDILLHVNVLRNFGQSSIADGAGIEVVTH 62 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G E DVFLH + +GL ++ G+ + ++ G+ + Sbjct: 108 VKWFDKAKGFGFANVFGRDE---DVFLHVEVLRQSGLSDVQSGEALAMRVIEG-KRGRMA 163 Query: 67 AENLKLVPKSSN 78 + L SS+ Sbjct: 164 VDVLAWEAASSD 175 >gi|148688938|gb|EDL20885.1| cold shock domain protein A, isoform CRA_a [Mus musculus] Length = 405 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 129 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 185 >gi|29477111|gb|AAH50156.1| Y box binding protein 1 [Danio rerio] Length = 309 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97 >gi|56754487|gb|AAW25431.1| unknown [Schistosoma japonicum] Length = 104 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DANGKYSAE 68 D + S E Sbjct: 84 DKGDEASGE 92 >gi|291411891|ref|XP_002722201.1| PREDICTED: cold shock domain protein A [Oryctolagus cuniculus] Length = 376 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 98 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 154 >gi|148688939|gb|EDL20886.1| cold shock domain protein A, isoform CRA_b [Mus musculus] Length = 292 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 >gi|197245601|gb|AAI68507.1| Ybx1 protein [Danio rerio] Length = 310 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97 >gi|62089378|dbj|BAD93133.1| CSDA protein variant [Homo sapiens] Length = 134 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI + E DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 26 GTVKWFNVRNGYGFINRNDTKE---DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 82 >gi|29437175|gb|AAH49977.1| Y box protein 1 [Mus musculus] Length = 322 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 >gi|10185723|gb|AAG14418.1|AF248546_1 Y-box protein 3 long isoform [Mus musculus] Length = 361 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 >gi|92373398|ref|NP_113751.3| nuclease-sensitive element-binding protein 1 [Rattus norvegicus] gi|113205059|ref|NP_035862.2| nuclease-sensitive element-binding protein 1 [Mus musculus] gi|148230224|ref|NP_001091240.1| Y box binding protein 1 [Xenopus laevis] gi|51704186|sp|P62961|YBOX1_RAT RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=CCAAT-binding transcription factor I subunit A; Short=CBF-A; AltName: Full=DNA-binding protein B; Short=DBPB; AltName: Full=Enhancer factor I subunit A; Short=EFI-A; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1 gi|51704189|sp|P62960|YBOX1_MOUSE RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=CCAAT-binding transcription factor I subunit A; Short=CBF-A; AltName: Full=DNA-binding protein B; Short=DBPB; AltName: Full=Enhancer factor I subunit A; Short=EFI-A; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1 gi|202435|gb|AAA40577.1| Y-box binding protein 1/DNA binding protein B [Mus musculus] gi|220895|dbj|BAA02569.1| DNA binding protein B [Rattus sp.] gi|15488612|gb|AAH13450.1| Y box protein 1 [Mus musculus] gi|15488999|gb|AAH13620.1| Y box protein 1 [Mus musculus] gi|20987294|gb|AAH29747.1| Y box protein 1 [Mus musculus] gi|21594391|gb|AAH31472.1| Y box protein 1 [Mus musculus] gi|38197295|gb|AAH61634.1| Y box protein 1 [Mus musculus] gi|47938951|gb|AAH72486.1| Y box binding protein 1 [Rattus norvegicus] gi|68533639|gb|AAH98672.1| Y box binding protein 1 [Rattus norvegicus] gi|74178193|dbj|BAE29883.1| unnamed protein product [Mus musculus] gi|76779878|gb|AAI06144.1| Y box protein 1 [Mus musculus] gi|120577450|gb|AAI30161.1| LOC100037035 protein [Xenopus laevis] gi|123227480|emb|CAM27834.1| Y box protein 1 [Mus musculus] gi|123228022|emb|CAM22937.1| Y box protein 1 [Mus musculus] gi|149035444|gb|EDL90125.1| rCG50488, isoform CRA_b [Rattus norvegicus] Length = 322 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 >gi|322368358|ref|ZP_08042927.1| cold shock protein [Haladaptatus paucihalophilus DX253] gi|320552374|gb|EFW94019.1| cold shock protein [Haladaptatus paucihalophilus DX253] Length = 64 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++ ++N GYGFI E S E DVF H V +L EGQ V +D Q D Sbjct: 3 KGTVDFFNDTGGYGFIDTEDSDE---DVFFHMEDVGGP---DLEEGQEVEFDIEQAD 53 >gi|300115369|ref|YP_003761944.1| cold-shock DNA-binding domain-containing protein [Nitrosococcus watsonii C-113] gi|299541306|gb|ADJ29623.1| cold-shock DNA-binding domain protein [Nitrosococcus watsonii C-113] Length = 229 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 7/78 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G I +N +KGYGFI+P GD VF H A + G G VT+ + D Sbjct: 1 MRMKGEIASWNDEKGYGFISP---MRGGDRVFAHIKAFVNRGR-RPAVGDAVTFS-MSTD 55 Query: 61 ANGKYSAENLKL--VPKS 76 A G++ A+ + VPK+ Sbjct: 56 ARGRHCAKEAIIAGVPKT 73 >gi|194207608|ref|XP_001916443.1| PREDICTED: similar to rCG50488 [Equus caballus] Length = 364 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 101 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 157 >gi|61367907|gb|AAX43065.1| nuclease sensitive element binding protein 1 [synthetic construct] gi|61369330|gb|AAX43318.1| nuclease sensitive element binding protein 1 [synthetic construct] Length = 325 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 >gi|290543326|ref|NP_001166512.1| Y box binding protein 1 [Cavia porcellus] gi|194241598|gb|ACF35054.1| YB1 [Cavia porcellus] Length = 324 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 >gi|220921873|ref|YP_002497174.1| cold-shock DNA-binding domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219946479|gb|ACL56871.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans ORS 2060] Length = 189 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KG+GFI P+ DV LH + + G + +EG V + VQ Sbjct: 26 GRIKWFDVAKGFGFIVPD---NGAPDVLLHVTCLRRDGHQSASEGARVVVEAVQR 77 >gi|148698506|gb|EDL30453.1| mCG4206 [Mus musculus] Length = 268 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 5 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 61 >gi|148225376|ref|NP_001087255.1| nuclease-sensitive element-binding protein 1 [Ovis aries] gi|140326474|gb|ABO86713.1| nuclease sensitive element binding protein 1 [Ovis aries] Length = 288 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 25 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGE 81 >gi|203398|gb|AAA40906.1| putative [Rattus norvegicus] Length = 322 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 >gi|950340|gb|AAA79243.1| DNA-binding protein A [Homo sapiens] Length = 342 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 93 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149 >gi|3121921|sp|Q44078|CSPA_AERHY RecName: Full=Major cold-shock protein gi|1402731|gb|AAC80230.1| major cold-shock protein [Aeromonas hydrophila] Length = 46 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KG+GFI+P T+ DVF+H SA+ + G L EGQ V + Q Sbjct: 1 EKGFGFISP---TDGSKDVFVHFSAIQTPGFKTLDEGQRVEFTIEQ 43 >gi|323136356|ref|ZP_08071438.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] gi|322398430|gb|EFY00950.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] Length = 191 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T TE D+FLH V G+ L G V Y + G + Sbjct: 122 VKWFNRVKGFGFLTRGEGTE---DIFLHMETVRRYGMTELKPGDSVLVRY-GDGPKGLMA 177 Query: 67 AENLKLVPKS 76 AE L KS Sbjct: 178 AEVRPLEAKS 187 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G IKW++ KGYGF+ P+ + D+ LH + + +GL EG V + Q A G Sbjct: 28 GRIKWFDVAKGYGFVVPD---DGSPDILLHVTILRRSGLQTAFEGARVVCE-AQKRAKG 82 >gi|203999|gb|AAA41108.1| enhancer factor-1-alpha [Rattus norvegicus] Length = 322 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 >gi|14250672|gb|AAH08801.1| Cold shock domain protein A [Homo sapiens] gi|18314511|gb|AAH21926.1| Cold shock domain protein A [Homo sapiens] gi|123984533|gb|ABM83612.1| cold shock domain protein A [synthetic construct] gi|123998509|gb|ABM86856.1| cold shock domain protein A [synthetic construct] gi|208966070|dbj|BAG73049.1| cold shock domain protein A [synthetic construct] Length = 372 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 93 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149 >gi|130488167|ref|NP_001076254.1| nuclease-sensitive element-binding protein 1 [Oryctolagus cuniculus] gi|75069491|sp|Q28618|YBOX1_RABIT RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=CCAAT-binding transcription factor I subunit A; Short=CBF-A; AltName: Full=Enhancer factor I subunit A; Short=EFI-A; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1; AltName: Full=p50 gi|608518|gb|AAA66069.1| p50 [Oryctolagus cuniculus] Length = 324 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 >gi|6166111|sp|Q62764|DBPA_RAT RecName: Full=DNA-binding protein A; AltName: Full=Cold shock domain-containing protein A; AltName: Full=Muscle Y-box protein YB2; AltName: Full=RYB-A; AltName: Full=Y-box-binding protein A gi|1101884|gb|AAB60520.1| YB2 [Rattus norvegicus] gi|1589174|prf||2210343A nicotinic acetylcholine receptor repressor Length = 361 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 >gi|149478389|ref|XP_001515006.1| PREDICTED: similar to AMP deaminase 1 (Myoadenylate deaminase) (AMP deaminase isoform M) [Ornithorhynchus anatinus] Length = 316 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 53 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 109 >gi|47059495|ref|NP_620817.2| DNA-binding protein A long isoform [Mus musculus] gi|82524639|ref|NP_114185.2| DNA-binding protein A [Rattus norvegicus] gi|61212920|sp|Q9JKB3|DBPA_MOUSE RecName: Full=DNA-binding protein A; AltName: Full=Cold shock domain-containing protein A; AltName: Full=Y-box protein 3 gi|29387050|gb|AAH48242.1| Cold shock domain protein A [Mus musculus] gi|76779326|gb|AAI05779.1| Cold shock domain protein A [Rattus norvegicus] Length = 361 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 >gi|27807361|ref|NP_777240.1| nuclease-sensitive element-binding protein 1 [Bos taurus] gi|34098946|ref|NP_004550.2| nuclease-sensitive element-binding protein 1 [Homo sapiens] gi|332248504|ref|XP_003273402.1| PREDICTED: nuclease-sensitive element-binding protein 1 [Nomascus leucogenys] gi|332808655|ref|XP_525693.3| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan troglodytes] gi|54040030|sp|P67808|YBOX1_BOVIN RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=CCAAT-binding transcription factor I subunit A; Short=CBF-A; AltName: Full=DNA-binding protein B; Short=DBPB; AltName: Full=Enhancer factor I subunit A; Short=EFI-A; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1 gi|54040031|sp|P67809|YBOX1_HUMAN RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=CCAAT-binding transcription factor I subunit A; Short=CBF-A; AltName: Full=DNA-binding protein B; Short=DBPB; AltName: Full=Enhancer factor I subunit A; Short=EFI-A; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1 gi|162983|gb|AAA30497.1| transcription factor EF1(A) [Bos taurus] gi|454152|gb|AAA20871.1| similar to dbpB protein [Homo sapiens] gi|12803207|gb|AAH02411.1| Y box binding protein 1 [Homo sapiens] gi|14714588|gb|AAH10430.1| Y box binding protein 1 [Homo sapiens] gi|15929560|gb|AAH15208.1| Y box binding protein 1 [Homo sapiens] gi|23468206|gb|AAH38384.1| Y box binding protein 1 [Homo sapiens] gi|41350935|gb|AAH65571.1| Y box binding protein 1 [Homo sapiens] gi|47125298|gb|AAH70084.1| Y box binding protein 1 [Homo sapiens] gi|47940506|gb|AAH71708.1| Y box binding protein 1 [Homo sapiens] gi|58477789|gb|AAH90038.1| Y box binding protein 1 [Homo sapiens] gi|61359169|gb|AAX41678.1| nuclease sensitive element binding protein 1 [synthetic construct] gi|68534659|gb|AAH98435.1| Y box binding protein 1 [Homo sapiens] gi|76779237|gb|AAI06046.1| Y box binding protein 1 [Homo sapiens] gi|86821283|gb|AAI05364.1| Y box binding protein 1 [Bos taurus] gi|119627554|gb|EAX07149.1| Y box binding protein 1, isoform CRA_b [Homo sapiens] gi|123981412|gb|ABM82535.1| Y box binding protein 1 [synthetic construct] gi|123996253|gb|ABM85728.1| Y box binding protein 1 [synthetic construct] gi|168277900|dbj|BAG10928.1| nuclease sensitive element-binding protein 1 [synthetic construct] gi|296488844|gb|DAA30957.1| nuclease-sensitive element-binding protein 1 [Bos taurus] Length = 324 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 >gi|77736623|ref|NP_001029990.1| protein lin-28 homolog B [Gallus gallus] gi|116248186|sp|Q45KJ4|LN28B_CHICK RecName: Full=Protein lin-28 homolog B; Short=Lin-28B gi|71724932|gb|AAZ38896.1| LIN28B [Gallus gallus] Length = 250 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS ES DVF+H+S + G +L EG+ V + Y Sbjct: 32 GHCKWFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTY 87 >gi|465508|sp|Q06066|YBOX1_CHICK RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1 gi|289797|gb|AAA02573.1| YB-1 protein [Gallus gallus] Length = 321 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 58 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114 >gi|194211706|ref|XP_001495854.2| PREDICTED: similar to Y-box protein ZONAB-B [Equus caballus] Length = 332 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 55 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 111 >gi|145284604|gb|ABP52049.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 27 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KG+GFI PE GDDVF+H Sbjct: 1 GQVKWFNNAKGFGFICPE---SGGDDVFVH 27 >gi|145298105|ref|YP_001140946.1| cold-shock protein, DNA-binding [Aeromonas salmonicida subsp. salmonicida A449] gi|142850877|gb|ABO89198.1| cold-shock protein, DNA-binding [Aeromonas salmonicida subsp. salmonicida A449] Length = 219 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 5/57 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITP--EGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTY 54 M ++G I +N +G+GFITP EG + G ++F+H SA+ S G L N+ G+ V+Y Sbjct: 1 MRYQGRIASWNEARGFGFITPEQEGGEQQGSELFVHISALQSDGSLPNV--GERVSY 55 >gi|187607756|ref|NP_001119929.1| nuclease-sensitive element-binding protein 1 isoform 1 [Danio rerio] gi|118763928|gb|AAI28886.1| Y box binding protein 1 [Danio rerio] gi|169159049|emb|CAQ15227.1| Y box binding protein 1 [Danio rerio] Length = 309 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97 >gi|181486|gb|AAA35750.1| DNA-binding protein B [Homo sapiens] Length = 364 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 101 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 157 >gi|18859137|ref|NP_571695.1| nuclease-sensitive element-binding protein 1 isoform 2 [Danio rerio] gi|3695368|gb|AAC62774.1| zfY1 [Danio rerio] gi|169642049|gb|AAI60650.1| Y box binding protein 1 [Danio rerio] Length = 310 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97 >gi|328543603|ref|YP_004303712.1| Cold shock-like protein cspG [polymorphum gilvum SL003B-26A1] gi|326413347|gb|ADZ70410.1| Cold shock-like protein cspG [Polymorphum gilvum SL003B-26A1] Length = 193 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 + ++KW+N KG+GF+T E +D+F+H + G+ L GQ V + G Sbjct: 119 KATVKWFNRVKGFGFLT---QGEGTEDIFIHMETLRRFGITELRPGQDVLVRF-GTGPKG 174 Query: 64 KYSAE 68 + +AE Sbjct: 175 RMAAE 179 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G+IKW++ KGYGFI P+ D+ LH + + G EG V + + Sbjct: 28 GTIKWFDIAKGYGFIVPDNGLP---DILLHVTCLRRDGFQTAYEGARVVCEVL 77 >gi|149035443|gb|EDL90124.1| rCG50488, isoform CRA_a [Rattus norvegicus] Length = 305 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 42 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 98 >gi|7385223|gb|AAF61741.1| RNA binding protein MSY4 [Mus musculus] Length = 361 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 >gi|311256155|ref|XP_003126523.1| PREDICTED: DNA-binding protein A-like [Sus scrofa] Length = 380 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 102 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 158 >gi|297691167|ref|XP_002822965.1| PREDICTED: DNA-binding protein A-like [Pongo abelii] Length = 371 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 92 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 148 >gi|148235020|ref|NP_001091543.1| DNA-binding protein A [Bos taurus] gi|146186540|gb|AAI40645.1| CSDA protein [Bos taurus] gi|296487252|gb|DAA29365.1| cold shock domain protein A [Bos taurus] Length = 376 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 99 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 155 >gi|332838569|ref|XP_003313542.1| PREDICTED: DNA-binding protein A isoform 1 [Pan troglodytes] Length = 305 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 95 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151 >gi|332838567|ref|XP_520744.3| PREDICTED: DNA-binding protein A isoform 2 [Pan troglodytes] Length = 374 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 95 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151 >gi|300790296|ref|YP_003770587.1| cold shock protein CspA [Amycolatopsis mediterranei U32] gi|299799810|gb|ADJ50185.1| cold shock protein CspA [Amycolatopsis mediterranei U32] Length = 128 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +KWY+ +KG+GF+T +G G DV++ ++A+ G+ L GQ + + Sbjct: 4 GKVKWYDAEKGFGFVTQDG----GADVYIRKAALPQ-GVEGLKAGQRLEF 48 >gi|224586882|ref|NP_003642.3| DNA-binding protein A isoform a [Homo sapiens] gi|97536050|sp|P16989|DBPA_HUMAN RecName: Full=DNA-binding protein A; AltName: Full=Cold shock domain-containing protein A; AltName: Full=Single-strand DNA-binding protein NF-GMB gi|1167838|emb|CAA64631.1| DNA-binding protein [Homo sapiens] gi|15026972|emb|CAA51261.1| cold shock domain protein A [Homo sapiens] gi|15990406|gb|AAH15564.1| Cold shock domain protein A [Homo sapiens] gi|119616607|gb|EAW96201.1| cold shock domain protein A, isoform CRA_a [Homo sapiens] gi|119616608|gb|EAW96202.1| cold shock domain protein A, isoform CRA_a [Homo sapiens] gi|189054724|dbj|BAG37363.1| unnamed protein product [Homo sapiens] Length = 372 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 93 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149 >gi|224586884|ref|NP_001138898.1| DNA-binding protein A isoform b [Homo sapiens] gi|16198465|gb|AAH15913.1| CSDA protein [Homo sapiens] gi|119616609|gb|EAW96203.1| cold shock domain protein A, isoform CRA_b [Homo sapiens] gi|119616610|gb|EAW96204.1| cold shock domain protein A, isoform CRA_b [Homo sapiens] Length = 303 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 93 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149 >gi|2745892|gb|AAB94768.1| Y box transcription factor [Mus musculus] Length = 299 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 36 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 92 >gi|199821|gb|AAA63390.1| Y box transcription factor [Mus musculus] Length = 322 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 >gi|296207663|ref|XP_002750741.1| PREDICTED: nuclease-sensitive element-binding protein 1-like [Callithrix jacchus] Length = 323 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 60 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 116 >gi|254498195|ref|ZP_05110944.1| cold shock domain-contain protein [Legionella drancourtii LLAP12] gi|254352603|gb|EET11389.1| cold shock domain-contain protein [Legionella drancourtii LLAP12] Length = 73 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G +KW+ +KG+GFI EG D F+H S + + G L +G V++ Sbjct: 8 QGIVKWFQKEKGFGFIQCEGQ-----DYFVHFSGIIAEGYKTLPDGAHVSF 53 >gi|54022606|ref|YP_116848.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54014114|dbj|BAD55484.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 138 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF+ S + G+DV++ RS+ G+ L GQ V + A G+ Sbjct: 4 GRVKWYDVEKGFGFL----SQDEGEDVYV-RSSALPEGVEGLKPGQRVEFGM----AAGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|988283|gb|AAA75476.1| mYB-1b [Mus musculus] Length = 322 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 >gi|302392639|ref|YP_003828459.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] gi|302204716|gb|ADL13394.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] Length = 66 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 6/43 (13%) Query: 5 GSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNL 46 G++KW++ +KGYGFI PE DDVF+H SA+ G +L Sbjct: 4 GTVKWFDSNKGYGFIERPEE-----DDVFVHFSAIQDDGFKDL 41 >gi|56800108|emb|CAI35156.1| Y box protein 2 [Mus musculus] Length = 282 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 20 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 76 >gi|163852424|ref|YP_001640467.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|163664029|gb|ABY31396.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] Length = 202 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KG+GFI P+ + DV LH + + G +EG + + VQ Sbjct: 39 GRIKWFDVSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR 90 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N +G+GF++ T D+F+H + G+ L G+ V Y D Sbjct: 128 LERAVVKWFNRLRGFGFLSRGDDT---PDIFVHMETLRRYGIAELKPGEEVMVRY--GDG 182 Query: 62 NGKYSAENLKLV 73 + A ++LV Sbjct: 183 SKGAMAAEVRLV 194 >gi|181484|gb|AAA35749.1| DNA-binding protein A [Homo sapiens] Length = 412 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 163 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 219 >gi|90424288|ref|YP_532658.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90106302|gb|ABD88339.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB18] Length = 220 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KGYGFI P+ + DV LH + + G EG + + VQ Sbjct: 56 GVIKWFDASKGYGFIVPDNGSP---DVLLHVTVLRRDGYQTAYEGARIICECVQR 107 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V + Sbjct: 145 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRF 196 >gi|296210997|ref|XP_002752196.1| PREDICTED: hypothetical protein LOC100396927 [Callithrix jacchus] Length = 302 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 92 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 148 >gi|254511315|ref|ZP_05123382.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium KLH11] gi|221535026|gb|EEE38014.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium KLH11] Length = 168 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF GS+E DVFLH + +GL +L G+ + + + G+ + Sbjct: 101 VKWFDKGKGFGFANVFGSSE---DVFLHIEVLRRSGLADLQPGEALAMRVI-DGKRGRMA 156 Query: 67 AENL 70 A+ L Sbjct: 157 AQVL 160 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 RG +KW++P KGYGF+ S + G D+ LH + + + G ++ +G Sbjct: 5 RGHVKWFDPAKGYGFVV---SDDGGPDILLHVNVLRNFGQSSVADG 47 >gi|194332739|ref|NP_001123667.1| Y box binding protein 2 [Xenopus (Silurana) tropicalis] gi|187469386|gb|AAI66950.1| LOC100170415 protein [Xenopus (Silurana) tropicalis] Length = 337 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 43 QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 99 Query: 60 D 60 + Sbjct: 100 E 100 >gi|9653686|gb|AAB46889.2| TSH receptor suppressor element-binding protein-1 [Rattus sp.] Length = 322 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 >gi|291405168|ref|XP_002719041.1| PREDICTED: Y box binding protein 2 [Oryctolagus cuniculus] Length = 275 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 13 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 69 >gi|83594086|ref|YP_427838.1| cold-shock DNA-binding protein family protein [Rhodospirillum rubrum ATCC 11170] gi|83577000|gb|ABC23551.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC 11170] Length = 70 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++KW+N KG+GFI P+ + G D F+H SAV Sbjct: 4 GTVKWFNVQKGFGFIAPD---DGGSDAFVHISAV 34 >gi|197284614|ref|YP_002150486.1| cold shock protein [Proteus mirabilis HI4320] gi|194682101|emb|CAR41685.1| putative cold shock protein [Proteus mirabilis HI4320] Length = 71 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 3/60 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ +KGYG I + + D+++++ A+A+ LTEGQ V + ++ A Sbjct: 5 LRMGRVKWFDNNKGYGLIVAKDLEQ---DIYVNKKAIANTKNKALTEGQDVEFSVIKTAA 61 >gi|83942584|ref|ZP_00955045.1| cold shock DNA-binding domain protein [Sulfitobacter sp. EE-36] gi|83953825|ref|ZP_00962546.1| cold shock DNA-binding domain protein [Sulfitobacter sp. NAS-14.1] gi|83841770|gb|EAP80939.1| cold shock DNA-binding domain protein [Sulfitobacter sp. NAS-14.1] gi|83846677|gb|EAP84553.1| cold shock DNA-binding domain protein [Sulfitobacter sp. EE-36] Length = 169 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G + DD+FLH + +GL +L G+ + + N G+ + Sbjct: 95 VKWFDKSKGFGFANVFGKS---DDIFLHIEVLRQSGLSDLQPGEALALRVI-NGERGQMA 150 Query: 67 AE 68 AE Sbjct: 151 AE 152 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 11/49 (22%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLH--------RSAVASAGLFNLT 47 +KW++P KG+GF+ S G D+ LH +S+VA +LT Sbjct: 2 VKWFDPAKGFGFVV---SDAGGPDILLHVNVLRNYGQSSVADGARIDLT 47 >gi|329925038|ref|ZP_08279982.1| cold-shock DNA-binding domain protein [Paenibacillus sp. HGF5] gi|328940157|gb|EGG36489.1| cold-shock DNA-binding domain protein [Paenibacillus sp. HGF5] Length = 80 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+++ +N KGYGF+ +G +G+ +F H + GL L+ G+ ++++ + DA G+ Sbjct: 12 GTVRKFNDPKGYGFVDVDG---TGERLFFHINESIEPGLGWLSYGERISFE-IGEDAKGR 67 Query: 65 YSAENLKLV 73 A +KL+ Sbjct: 68 NHAVKIKLI 76 >gi|148680545|gb|EDL12492.1| Y box protein 2 [Mus musculus] Length = 268 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 6 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 62 >gi|170738730|ref|YP_001767385.1| cold-shock DNA-binding domain-containing protein [Methylobacterium sp. 4-46] gi|168193004|gb|ACA14951.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46] Length = 204 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KG+GFI P+ DV LH + + G + +EG + + VQ Sbjct: 41 GRIKWFDVAKGFGFIVPD---SGAPDVLLHVTCLRRDGHQSASEGARIVVEAVQR 92 >gi|22901740|gb|AAN10049.1| Y-box protein Ct-p40 [Chironomus tentans] Length = 264 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ D+F+H+SA+ + ++ +G++V +D V Sbjct: 32 GTVKWFNVKSGYGFIN---RNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVV 85 >gi|62389710|ref|YP_225112.1| cold shock protein [Corynebacterium glutamicum ATCC 13032] gi|41325045|emb|CAF19526.1| Cold shock protein [Corynebacterium glutamicum ATCC 13032] Length = 127 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 5/52 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G++KWY+ ++G+GF+ S G+D F+ + V G+ L +GQ + +D+ Sbjct: 4 GTVKWYDAERGFGFV----SNPGGEDCFVGKQ-VLPKGVTELHKGQRIDFDF 50 >gi|83592002|ref|YP_425754.1| cold-shock DNA-binding protein family protein [Rhodospirillum rubrum ATCC 11170] gi|83574916|gb|ABC21467.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC 11170] Length = 68 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G+I W++ GYGFI P+ + G D+ + A+ +GL +L +GQ V Y Sbjct: 4 GTITWFDTINGYGFIRPD---DGGGDIAVDMPALDRSGLRSLRDGQRVAY 50 >gi|2073109|dbj|BAA19849.1| Y box protein 1 [Carassius auratus] Length = 311 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 42 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 98 >gi|145219984|ref|YP_001130693.1| cold-shock DNA-binding protein family protein [Prosthecochloris vibrioformis DSM 265] gi|145206148|gb|ABP37191.1| cold-shock DNA-binding protein family [Chlorobium phaeovibrioides DSM 265] Length = 85 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 5/44 (11%) Query: 4 RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNL 46 + +KW++ KGYGFI PEG G+D+F+H SA+ S F + Sbjct: 3 KSKVKWFDGKKGYGFILHPEG----GEDIFVHFSAINSEQPFKV 42 >gi|149610695|ref|XP_001517390.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus] Length = 223 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 62 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118 >gi|145284606|gb|ABP52050.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 27 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KG+GFI PE GDDVF+H Sbjct: 1 GRVKWFNNAKGFGFICPE---SGGDDVFVH 27 >gi|242008099|ref|XP_002424850.1| Nuclease sensitive element-binding protein, putative [Pediculus humanus corporis] gi|212508400|gb|EEB12112.1| Nuclease sensitive element-binding protein, putative [Pediculus humanus corporis] Length = 288 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57 G++KW+N GYGFI + + E DVF+H++A+ + ++ +G++V +D V Sbjct: 27 GTVKWFNVKSGYGFINRDDTKE---DVFVHQTAIVKNNPKKFVRSVGDGEVVEFDVV 80 >gi|109113073|ref|XP_001107460.1| PREDICTED: y-box-binding protein 2-like [Macaca mulatta] Length = 359 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 97 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153 >gi|311268286|ref|XP_003131986.1| PREDICTED: y-box-binding protein 2-like [Sus scrofa] Length = 394 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 98 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154 >gi|163742804|ref|ZP_02150189.1| cold shock DNA-binding domain protein [Phaeobacter gallaeciensis 2.10] gi|161384059|gb|EDQ08443.1| cold shock DNA-binding domain protein [Phaeobacter gallaeciensis 2.10] Length = 164 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 10/75 (13%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG---QLVTYDYVQNDANG 63 +KW++P KG+GF+ S E G D+ LH + + + G ++ +G +LVT+ G Sbjct: 1 MKWFDPTKGFGFVV---SDEGGPDILLHVNVLRNFGQSSIADGAEVELVTH----RTERG 53 Query: 64 KYSAENLKLVPKSSN 78 + E L + P + + Sbjct: 54 VQAVEVLSITPPARD 68 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G E DVFLH + +GL L G+ + + + G+ + Sbjct: 94 VKWFDKGKGFGFANVFGRDE---DVFLHVEVLRQSGLSELQPGEALGMRVI-DGKRGRMA 149 Query: 67 AENL 70 E L Sbjct: 150 VEVL 153 >gi|325297104|ref|NP_001191560.1| Y-box factor homolog [Aplysia californica] gi|1175568|sp|P41824|YBOXH_APLCA RecName: Full=Y-box factor homolog; AltName: Full=APY1 gi|409419|gb|AAA60373.1| Y-Box factor [Aplysia californica] Length = 253 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI + + E DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 35 GTVKWFNVKSGYGFINRDDTKE---DVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGE 91 >gi|254503970|ref|ZP_05116121.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii DFL-11] gi|222440041|gb|EEE46720.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii DFL-11] Length = 193 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N KG+GF+T E +D+F+H + G+ L GQ V + G+ Sbjct: 121 TVKWFNRVKGFGFLT---QGEGTEDIFIHMETLRRYGITELRPGQEVLVRF-GTGPKGRM 176 Query: 66 SAE 68 +AE Sbjct: 177 AAE 179 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G+IKW++ KGYGFI P +SG+ D+ LH + + G EG V + + Sbjct: 28 GTIKWFDVGKGYGFIVP----DSGETDILLHVTCLRRDGFQTAYEGARVVCEVL 77 >gi|71679965|gb|AAI00455.1| Ybx2 protein [Mus musculus] Length = 171 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 97 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVE 151 >gi|317123896|ref|YP_004098008.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] gi|315587984|gb|ADU47281.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] Length = 131 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +++++ DKG+GFI + + G DVFLH +A+ G+ L +G V + V+ G+ Sbjct: 4 GKVRFFDADKGFGFI----AEDDGADVFLHANALPE-GVTTLKKGTRVEFGIVE----GR 54 Query: 65 YSAENLKL 72 A+ L++ Sbjct: 55 KGAQALQV 62 >gi|315499811|ref|YP_004088614.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] gi|315417823|gb|ADU14463.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] Length = 184 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAG 42 G +KW++ KGYGFI P+ +G DV LH SA+ G Sbjct: 18 GRVKWFDAGKGYGFIVPQSPELTGMRDVLLHVSALRDMG 56 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 +IKW+N KGYGF+ G+ + D+F+H + GL ++ +G + + Sbjct: 119 TIKWFNRTKGYGFVV-RGNDPT--DIFIHIETLRRFGLEDIQQGDTLMVRF 166 >gi|124267217|ref|YP_001021221.1| cold shock DNA-binding domain-containing protein [Methylibium petroleiphilum PM1] gi|124259992|gb|ABM94986.1| cold-shock DNA-binding domain [Methylibium petroleiphilum PM1] Length = 203 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K +N ++G+GFI P G D+F+H A S G T GQ VT++ V+ NGK Sbjct: 5 GKLKSWNDERGFGFIDP---VHGGQDIFVHIKAFPS-GTGRPTVGQAVTFE-VELGPNGK 59 Query: 65 YSAENLK 71 A +++ Sbjct: 60 KRARSVQ 66 >gi|218531182|ref|YP_002421998.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|254562173|ref|YP_003069268.1| tandem cold-shock DNA-binding domain-containing protein [Methylobacterium extorquens DM4] gi|218523485|gb|ACK84070.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|254269451|emb|CAX25417.1| putative tandem cold-shock DNA-binding domain protein [Methylobacterium extorquens DM4] Length = 181 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KG+GFI P+ + DV LH + + G +EG + + VQ Sbjct: 18 GRIKWFDVSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR 69 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N +G+GF++ T D+F+H + G+ L G+ V Y D Sbjct: 107 LERAVVKWFNRLRGFGFLSRGDDT---PDIFVHMETLRRYGIAELKPGEEVMVRY--GDG 161 Query: 62 NGKYSAENLKLV 73 + A ++LV Sbjct: 162 SKGAMAAEVRLV 173 >gi|62656341|ref|XP_220618.3| PREDICTED: Y box protein 2 [Rattus norvegicus] gi|109491139|ref|XP_001079683.1| PREDICTED: Y box binding protein 2 [Rattus norvegicus] Length = 359 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 97 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153 >gi|57086603|ref|XP_546585.1| PREDICTED: similar to Y-box binding protein-2 (Germ cell specific Y-box binding protein) (FRGY2 homolog) [Canis familiaris] Length = 361 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 98 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154 >gi|117956377|ref|NP_058571.2| Y-box-binding protein 2 [Mus musculus] gi|56800107|emb|CAI35155.1| Y box protein 2 [Mus musculus] gi|187954905|gb|AAI41113.1| Y box protein 2 [Mus musculus] Length = 359 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 97 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153 >gi|327440390|dbj|BAK16755.1| cold shock protein [Solibacillus silvestris StLB046] Length = 77 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 RG K ++ ++G+G+I+ EG DV++H S++ G +LT G+ V++D +N Sbjct: 6 RGVCKIFDDEEGWGWISIEGEA----DVWVHFSSIQMDGFKSLTIGEAVSFDLEEN 57 >gi|189502046|ref|YP_001957763.1| hypothetical protein Aasi_0637 [Candidatus Amoebophilus asiaticus 5a2] gi|189497487|gb|ACE06034.1| hypothetical protein Aasi_0637 [Candidatus Amoebophilus asiaticus 5a2] Length = 67 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDANG 63 G+IK++N KGYGFIT S D F+H +A+ ++ EG VT++ V+ Sbjct: 4 GTIKFFNESKGYGFITDSAS----QDHFVHVTALHDEVKELDMKEGHKVTFETVETSRGS 59 Query: 64 KYSAENLKL 72 +A N++L Sbjct: 60 --NATNVRL 66 >gi|73976711|ref|XP_848660.1| PREDICTED: similar to nuclease sensitive element binding protein 1 [Canis familiaris] Length = 448 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 170 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 226 >gi|291394002|ref|XP_002713355.1| PREDICTED: DNA-binding protein B-like [Oryctolagus cuniculus] Length = 320 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 57 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLGSVGDGETVEFDVVEGE 113 >gi|161522615|ref|YP_001585544.1| cold-shock DNA-binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|160346168|gb|ABX19252.1| cold-shock DNA-binding domain protein [Burkholderia multivorans ATCC 17616] Length = 193 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW++ DKG+GFI ES D F H S V A EG +V +D N Sbjct: 2 RGTVKWFSKDKGHGFI----YGESAVDYFFHVSDVVGAD--APREGDIVEFDATSNKRGP 55 Query: 64 KYSAENLKLVPK 75 + A +++V + Sbjct: 56 R--AATVRIVER 65 >gi|149052644|gb|EDM04461.1| rCG63497 [Rattus norvegicus] Length = 322 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI S ++ +DVF+H++A+ L ++ +G+ V ++ V+ + Sbjct: 59 GTVKWFNVRNGYGFIN---SNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFEVVEGE 115 >gi|91977002|ref|YP_569661.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris BisB5] gi|91683458|gb|ABE39760.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB5] Length = 219 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KGYGFI P+ DV LH + + G EG + + VQ Sbjct: 55 GVIKWFDASKGYGFIVPDNGAA---DVLLHVTVLRRDGYQTAYEGARIVVECVQR 106 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V + Sbjct: 144 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRF 195 >gi|302530552|ref|ZP_07282894.1| cold-shock DNA-binding domain-containing protein [Streptomyces sp. AA4] gi|302439447|gb|EFL11263.1| cold-shock DNA-binding domain-containing protein [Streptomyces sp. AA4] Length = 139 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V G +KWY+ +KG+GF+T +G G DV++ ++A+ G+ L GQ + + Sbjct: 12 VPTGKVKWYDAEKGFGFVTQDG----GADVYIRKAALPH-GVEGLKAGQRLEF 59 >gi|147904000|ref|NP_001091595.1| Y-box-binding protein 2 [Bos taurus] gi|146186879|gb|AAI40615.1| YBX2 protein [Bos taurus] gi|296476769|gb|DAA18884.1| Y box binding protein 2 [Bos taurus] Length = 360 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 98 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154 >gi|196007122|ref|XP_002113427.1| hypothetical protein TRIADDRAFT_64023 [Trichoplax adhaerens] gi|190583831|gb|EDV23901.1| hypothetical protein TRIADDRAFT_64023 [Trichoplax adhaerens] Length = 279 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 27/36 (75%), Gaps = 3/36 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40 G +KW+N +GYGFI + ++G+DVF+H++A+ + Sbjct: 31 GKVKWFNVKRGYGFIHRD---DTGEDVFVHQTAIQA 63 >gi|194217599|ref|XP_001918171.1| PREDICTED: similar to LOC614429 protein [Equus caballus] Length = 291 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 43 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 99 >gi|22901742|gb|AAN10050.1| Y-box protein Ct-p50 [Chironomus tentans] Length = 317 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ D+F+H+SA+ + ++ +G++V +D V Sbjct: 32 GTVKWFNVKSGYGFIN---RNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVV 85 >gi|291333272|gb|ADD92980.1| cold shock protein [uncultured archaeon MedDCM-OCT-S04-C163] Length = 63 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 4/35 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 +G++KW+N KG+GFI EG GDD+F+H + V Sbjct: 3 QGTVKWFNQVKGFGFIEQEG----GDDLFVHITQV 33 >gi|86750055|ref|YP_486551.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris HaA2] gi|86573083|gb|ABD07640.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris HaA2] Length = 221 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KGYGFI P+ DV LH + + G EG + + VQ Sbjct: 57 GVIKWFDASKGYGFIVPDNGAA---DVLLHVTVLRRDGYQTAYEGARIVVECVQR 108 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V + Sbjct: 146 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRF 197 >gi|1483311|emb|CAA68079.1| Y-box protein [Dugesia japonica] Length = 266 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G +KW+N +GYGF+ ++ +D+F+H+SA+ + ++ EG+ + +D V+ Sbjct: 31 GKVKWFNVKRGYGFVC---RNDNQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVK 85 >gi|99080990|ref|YP_613144.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TM1040] gi|99037270|gb|ABF63882.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040] Length = 179 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 6/54 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG---QLVTY 54 RG +KW++P KGYGFI + G D+ LH + + + G ++ +G ++VT+ Sbjct: 12 RGLVKWFDPAKGYGFIV---CPDDGPDILLHVNVLRNFGQSSVADGAGIEVVTH 62 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G E DVFLH + +GL ++ G+ + V + G+ + Sbjct: 108 VKWFDKAKGFGFANVFGRDE---DVFLHVEVLRQSGLSDVQSGEALAM-RVIDGKRGRMA 163 Query: 67 AENLKLVPKSSN 78 + L SS+ Sbjct: 164 VDVLAWEAASSD 175 >gi|86145147|ref|ZP_01063478.1| hypothetical protein MED222_04500 [Vibrio sp. MED222] gi|85836724|gb|EAQ54844.1| hypothetical protein MED222_04500 [Vibrio sp. MED222] Length = 84 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 RG I W++ + G+GF P + GD DV +H S + G N+ EGQ V + + Sbjct: 8 RGYITWFHLENGFGFAKP----DHGDIDVLIHISVIEFDGEINVEEGQRVYMEL--EEVK 61 Query: 63 GKYSAENLKLVP 74 GK +K++P Sbjct: 62 GKPHWNAVKVLP 73 >gi|296227166|ref|XP_002759249.1| PREDICTED: Y-box-binding protein 2-like, partial [Callithrix jacchus] Length = 253 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57 G++KW+N GYGFI+ ++ +DVF+H++A+ L ++ +G+ V +D V Sbjct: 97 GTVKWFNVRNGYGFIS---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVV 150 >gi|92117669|ref|YP_577398.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91800563|gb|ABE62938.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 217 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V + Sbjct: 142 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQFVLVRF 193 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KGYGFI P+ DV LH + + G + EG + + VQ Sbjct: 53 GVIKWFDASKGYGFIIPD---NGWSDVLLHVTVLRRDGYQTVYEGARLICECVQR 104 >gi|74007889|ref|XP_531701.2| PREDICTED: similar to nuclease sensitive element binding protein 1 [Canis familiaris] Length = 399 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 136 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNHPRKYLRSVGDGETVEFDVVEGE 192 >gi|296201419|ref|XP_002748032.1| PREDICTED: Y-box-binding protein 2-like [Callithrix jacchus] Length = 390 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 103 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 159 >gi|187779634|ref|ZP_02996107.1| hypothetical protein CLOSPO_03230 [Clostridium sporogenes ATCC 15579] gi|187773259|gb|EDU37061.1| hypothetical protein CLOSPO_03230 [Clostridium sporogenes ATCC 15579] Length = 69 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 5/60 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60 +H G +KW++ ++GYGFI S +G DV++H V +L EG+ V +D ++ + Sbjct: 3 MHTGIVKWFDNERGYGFI----SGNNGKDVYVHSMQVKEKTHNKDLHEGEEVLFDIIERE 58 >gi|297278427|ref|XP_001088540.2| PREDICTED: hypothetical protein LOC700140 [Macaca mulatta] Length = 511 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 205 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 261 >gi|260770106|ref|ZP_05879039.1| integral membrane protein [Vibrio furnissii CIP 102972] gi|260615444|gb|EEX40630.1| integral membrane protein [Vibrio furnissii CIP 102972] gi|315182622|gb|ADT89535.1| hypothetical protein vfu_B01354 [Vibrio furnissii NCTC 11218] Length = 195 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G I ++ DKGYGFIT P+G ++ +F+H SAV L + V++D V+ D Sbjct: 2 KGKITRWHDDKGYGFITAPDGKSK----IFVHISAVKHRAK-RLAKNDTVSFD-VEQDRK 55 Query: 63 GKYSAENLKL 72 G+ +A N++L Sbjct: 56 GRLNAVNVEL 65 >gi|323158695|gb|EFZ44709.1| cold shock-like protein cspI [Escherichia coli E128010] Length = 63 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 N KG+GFITP + DVF+H SA+ G L EGQ V ++ Sbjct: 6 NESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFE 47 >gi|311740925|ref|ZP_07714752.1| cold-shock domain family protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311304445|gb|EFQ80521.1| cold-shock domain family protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 126 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF++ G +DV++ R+ V G+ L GQ + +D+ A G+ Sbjct: 4 GKVKWYDAEKGFGFVSNPGD----EDVYVGRN-VLPKGVEELFPGQRIDFDF----AAGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 RGPQALRV 62 >gi|212636761|ref|YP_002313286.1| hypothetical protein swp_4029 [Shewanella piezotolerans WP3] gi|212558245|gb|ACJ30699.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 251 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPE--GSTESGDDVFLHRSAVASAG 42 M+ +G I +N KGYGFI E GS ++ DVF+H SA+ G Sbjct: 1 MIKKGQIVRWNDSKGYGFIRCEVQGSEQATQDVFMHMSALEPMG 44 >gi|294886195|ref|XP_002771604.1| protein phosphatase 2C ABI2, putative [Perkinsus marinus ATCC 50983] gi|239875310|gb|EER03420.1| protein phosphatase 2C ABI2, putative [Perkinsus marinus ATCC 50983] Length = 624 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 16/83 (19%) Query: 4 RGSIKWYNPDKGYGFITPEGS-------------TESGDDVFLHRSAVASAG-LFNLTEG 49 +G IK+Y+P + +G+IT GS + S DD++ +R + A + L G Sbjct: 136 KGRIKFYSPQRHFGYITVVGSPEGAEENEEDEDTSASQDDLYFNRRDLLDANEIEKLDTG 195 Query: 50 QLVTYDYVQNDANGKYSAENLKL 72 VT+D ++ NG++SA N+K+ Sbjct: 196 MPVTFDIAED--NGQFSAVNVKV 216 >gi|284038260|ref|YP_003388190.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74] gi|283817553|gb|ADB39391.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74] Length = 198 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++K++N KG+GFI S SGDD+F+H SA+ Sbjct: 139 GTVKFFNETKGFGFI---KSDSSGDDIFVHVSAL 169 >gi|85717340|ref|ZP_01048292.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] gi|85695815|gb|EAQ33721.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] Length = 202 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KGYGFI P+ DV LH + + G EG + D VQ Sbjct: 38 GVIKWFDASKGYGFIVPDNGWP---DVLLHVTVLRRDGYQTAYEGARLVCDCVQR 89 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +G+GF+T T D+F+H + G+ L GQ V + Sbjct: 127 LERAQVKWFNRLRGFGFLTRGDGTP---DIFVHMETLRRFGITELRPGQFVLVRF 178 >gi|255034693|ref|YP_003085314.1| cold-shock DNA-binding domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254947449|gb|ACT92149.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM 18053] Length = 63 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 3/37 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 ++RG++K++N KG+GFI PE G D+F+H + + Sbjct: 1 MNRGTVKFFNDTKGFGFIAPE---NGGSDIFVHTTGL 34 >gi|50978844|ref|NP_001003127.1| Y-box protein ZONAB-A [Canis lupus familiaris] gi|8100510|gb|AAF72335.1|AF171061_1 Y-box protein ZONAB-A [Canis lupus familiaris] Length = 304 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H +A+ L ++ +G+ V +D V+ + Sbjct: 95 GTVKWFNVRNGYGFIN---RNDTKEDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151 >gi|157278086|ref|NP_001098143.1| Y-box binding protein [Oryzias latipes] gi|27348122|dbj|BAC45236.1| Y-box binding protein [Oryzias latipes] Length = 306 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 43 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 99 >gi|238763346|ref|ZP_04624310.1| Cold shock-like protein [Yersinia kristensenii ATCC 33638] gi|238698445|gb|EEP91198.1| Cold shock-like protein [Yersinia kristensenii ATCC 33638] Length = 62 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 5/49 (10%) Query: 7 IKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +KW+N +GYGFI+P +GS DV++ ++A+A+ +L+EGQ V + Sbjct: 1 MKWFNQSEGYGFISPHDGSL----DVYVSKTAIANTKNKSLSEGQDVEF 45 >gi|197632617|gb|ACH71032.1| Y-box binding protein-1 [Salmo salar] gi|209732334|gb|ACI67036.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|221222302|gb|ACM09812.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|223646798|gb|ACN10157.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|223649012|gb|ACN11264.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|223672655|gb|ACN12509.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|303663491|gb|ADM16105.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] Length = 300 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPKKYLRSVGDGETVEFDVVEGE 97 >gi|23007963|ref|ZP_00049605.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 202 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KG+GFI P+ + DV LH + + G +EG + + VQ Sbjct: 39 GRIKWFDVSKGFGFILPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR 90 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +G+GF++ T D+F+H + G+ L G+ V Y D + Sbjct: 133 VKWFNRLRGFGFLSRGDGT---PDIFVHMETLRRYGIAELKPGEQVLVRY--GDGSKGAM 187 Query: 67 AENLKLV 73 A ++LV Sbjct: 188 AAEVRLV 194 >gi|163786612|ref|ZP_02181060.1| cold shock protein, DNA-binding [Flavobacteriales bacterium ALC-1] gi|159878472|gb|EDP72528.1| cold shock protein, DNA-binding [Flavobacteriales bacterium ALC-1] Length = 63 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 6/50 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++K++N KG+GFIT E E+G D+F+H S + L EG V Y Sbjct: 3 GTVKFFNDSKGFGFITNE---ETGKDIFVHVSNLNGV---ELREGDNVEY 46 >gi|115524924|ref|YP_781835.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115518871|gb|ABJ06855.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisA53] Length = 219 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KGYGFI P+ DV LH + + G EG + + VQ Sbjct: 55 GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGFQTAYEGARIICECVQR 106 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V + Sbjct: 144 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRF 195 >gi|255324986|ref|ZP_05366093.1| cold-shock DNA-binding domain protein [Corynebacterium tuberculostearicum SK141] gi|255297975|gb|EET77285.1| cold-shock DNA-binding domain protein [Corynebacterium tuberculostearicum SK141] Length = 126 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF++ G +DV++ R+ V G+ L GQ + +D+ A G+ Sbjct: 4 GKVKWYDAEKGFGFVSNAGD----EDVYVGRN-VLPKGVEELFPGQRIDFDF----AAGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 RGPQALRV 62 >gi|221116100|ref|XP_002159745.1| PREDICTED: similar to Y box binding protein 1 [Hydra magnipapillata] Length = 308 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 38 GTVKWFNVRNGYGFIH---RNDTQNDVFVHQTAIVKNNPNKYLRSVGDGETVEFDVVE 92 >gi|56459785|ref|YP_155066.1| cold shock protein [Idiomarina loihiensis L2TR] gi|56178795|gb|AAV81517.1| Cold shock protein [Idiomarina loihiensis L2TR] Length = 71 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +KW+N KG+GFI E + D+F H S + G L GQ V ++ Sbjct: 4 GKVKWFNNSKGFGFIESE---DREGDIFAHYSTIEMEGYRTLKAGQPVEFE 51 >gi|281352187|gb|EFB27771.1| hypothetical protein PANDA_013847 [Ailuropoda melanoleuca] Length = 163 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 49 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 105 >gi|157373787|ref|YP_001472387.1| cold-shock DNA-binding domain-containing protein [Shewanella sediminis HAW-EB3] gi|157316161|gb|ABV35259.1| cold-shock DNA-binding domain protein [Shewanella sediminis HAW-EB3] Length = 217 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG++ +N +KG+GFI PE +G DVF+H SA+ + G + Y + A Sbjct: 1 MERGTLVRWNDEKGFGFIKPEAG--NGKDVFIHISALKHMARKPMV-GDAIQY-LTEQQA 56 Query: 62 NGKYSA 67 +GK A Sbjct: 57 DGKVKA 62 >gi|8100512|gb|AAF72336.1|AF171062_1 Y-box protein ZONAB-B [Canis lupus familiaris] Length = 372 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H +A+ L ++ +G+ V +D V+ + Sbjct: 95 GTVKWFNVRNGYGFIN---RNDTKEDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151 >gi|301778155|ref|XP_002924500.1| PREDICTED: hypothetical protein LOC100473556 [Ailuropoda melanoleuca] Length = 199 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 49 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 105 >gi|153938873|ref|YP_001391027.1| cold shock protein [Clostridium botulinum F str. Langeland] gi|170756146|ref|YP_001781321.1| cold shock protein [Clostridium botulinum B1 str. Okra] gi|152934769|gb|ABS40267.1| cold shock protein [Clostridium botulinum F str. Langeland] gi|169121358|gb|ACA45194.1| cold shock protein [Clostridium botulinum B1 str. Okra] gi|295319083|gb|ADF99460.1| cold shock protein [Clostridium botulinum F str. 230613] Length = 69 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 5/60 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60 +H G++KW++ ++GYGFI + +G DV++H + +L EG+ V +D V+ + Sbjct: 3 MHTGTVKWFDNERGYGFI----AGNNGKDVYVHYMQIKEKTHNKDLHEGEEVLFDIVEKE 58 >gi|312377865|gb|EFR24595.1| hypothetical protein AND_10704 [Anopheles darlingi] Length = 428 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G +KW+N GYGFI G T +DVF+H+SA+A + ++ +G+ V +D V Sbjct: 93 GVVKWFNVKSGYGFIN-RGDTH--EDVFVHQSAIARNNPKKAVRSVGDGEEVEFDVV 146 >gi|75675801|ref|YP_318222.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255] gi|74420671|gb|ABA04870.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi Nb-255] Length = 217 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KGYGFI P+ DV LH + + G EG + D VQ Sbjct: 53 GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVCDCVQR 104 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V + Sbjct: 142 LERAQVKWFNRLRGFGFLT---RGEGTPDIFVHMETLRRFGITELRPGQFVLVRF 193 >gi|322370080|ref|ZP_08044642.1| cold shock protein [Haladaptatus paucihalophilus DX253] gi|320550416|gb|EFW92068.1| cold shock protein [Haladaptatus paucihalophilus DX253] Length = 64 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 6/55 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G + ++N GYGFI+ + ++ DDVF H V A +L EGQ + +D Q Sbjct: 3 KGKVDFFNDTGGYGFIS---TDDADDDVFFHMEDVGGA---DLEEGQEIEFDIEQ 51 >gi|311114545|ref|YP_003985766.1| cold-shock domain family protein [Gardnerella vaginalis ATCC 14019] gi|310946039|gb|ADP38743.1| cold-shock domain family protein [Gardnerella vaginalis ATCC 14019] Length = 129 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G ++WY+ KGYGFI E G DVFL SA+ + + L +G V + V+ Sbjct: 4 GRVRWYDSKKGYGFIC----DEDGKDVFLPSSALPES-VKELRKGTRVEFSVVE 52 >gi|300770548|ref|ZP_07080427.1| competence factor transporter ComB [Sphingobacterium spiritivorum ATCC 33861] gi|300763024|gb|EFK59841.1| competence factor transporter ComB [Sphingobacterium spiritivorum ATCC 33861] Length = 63 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 7/54 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++K++N KG+GFITP+ + DVF+H + + + + EG VTY+ Sbjct: 1 MNTGTVKFFNETKGFGFITPQ---DGSADVFVHTTGLKN----QVREGDEVTYE 47 >gi|160873811|ref|YP_001553127.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS195] gi|160859333|gb|ABX47867.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195] gi|315266036|gb|ADT92889.1| Excalibur domain protein [Shewanella baltica OS678] Length = 219 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ RG + +N +KG+GFI PE + + DVF+H S + + ++ VQND Sbjct: 2 LMDRGVLVRWNDEKGFGFIQPEKN--AAQDVFIHISVLKKMARKPIVGDSILFQTEVQND 59 Query: 61 ANGK---YSAENLKLVPKSS 77 K S E + +V SS Sbjct: 60 GKRKAVIASIEGVAVVAASS 79 >gi|124003277|ref|ZP_01688127.1| conserved domain protein [Microscilla marina ATCC 23134] gi|123991375|gb|EAY30806.1| conserved domain protein [Microscilla marina ATCC 23134] Length = 64 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 7/54 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +++G +K++ DKGYGFIT ++++G+D+F H S L E VTY+ Sbjct: 1 MNKGVVKFFKEDKGYGFIT---NSDTGEDIFFHVSDTQDQ----LFENDNVTYE 47 >gi|126726386|ref|ZP_01742227.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2150] gi|126704249|gb|EBA03341.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2150] Length = 178 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 IKW++ KG+GF GS+ DD+F+H + GL +L G+ + + + GK + Sbjct: 112 IKWFDKSKGFGFANEFGSS---DDIFVHVETLRRYGLADLMPGEAICLK-IADGERGKMA 167 Query: 67 AE 68 E Sbjct: 168 VE 169 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GF+ S E G D+ LH + + + G ++ + + VQ+ A G Sbjct: 18 GKVKWFDQAKGFGFVV---SDEGGSDILLHANVLRNFGQSSIADATPLVI-AVQDTARGI 73 Query: 65 YSAENLKL 72 + E + + Sbjct: 74 QATEVISI 81 >gi|305665006|ref|YP_003861293.1| cold shock protein-like CspA family [Maribacter sp. HTCC2170] gi|88707420|gb|EAQ99665.1| cold shock protein-like CspA family [Maribacter sp. HTCC2170] Length = 63 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFIT EG + D F+H S + + EG V +D + Sbjct: 1 MNKGTVKFFNNAKGFGFITEEGVDK---DHFVHVSGLVDE----IREGDEVEFDL--QEG 51 Query: 62 NGKYSAENLKLV 73 N +A N+K++ Sbjct: 52 NKGLNAVNVKVI 63 >gi|332521005|ref|ZP_08397465.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4] gi|332043535|gb|EGI79731.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4] Length = 63 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFIT EGS + D F+H S + + EG V +D +Q G Sbjct: 3 QGTVKFFNDSKGFGFITEEGSDK---DHFVHISGLID----EVREGDAVEFD-LQEGRKG 54 Query: 64 KYSAENLKLV 73 +A N+K++ Sbjct: 55 -MNAVNVKVI 63 >gi|183601800|ref|ZP_02963170.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019] gi|219683669|ref|YP_002470052.1| cold shock protein [Bifidobacterium animalis subsp. lactis AD011] gi|183219406|gb|EDT90047.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019] gi|219621319|gb|ACL29476.1| cold shock protein [Bifidobacterium animalis subsp. lactis AD011] Length = 129 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G I+W++ KGYGFI + + G DVFL ++A+ G+ N +G V Y ++ Sbjct: 4 GRIRWFDAKKGYGFI----AGDDGKDVFLPQTALPQ-GVRNPRKGAKVEYSVIE 52 >gi|332849851|ref|XP_001142318.2| PREDICTED: y-box-binding protein 2-like [Pan troglodytes] Length = 333 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L + +G+ V +D V+ + Sbjct: 65 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQAAIKRNNPRKFLRTVGDGETVEFDVVEGE 121 >gi|148645032|gb|ABR01046.1| Csp [uncultured Geobacter sp.] Length = 56 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +N KG+GF+ E+GDDVF H SA+ G +L EG V ++ + Sbjct: 1 FNDGKGFGFL----EQENGDDVFCHFSAITGDGFKSLAEGDKVKFEVTK 45 >gi|194131842|gb|ACF33226.1| Y-box protein Lyb1 [Lethenteron japonicum] Length = 331 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D V+ + Sbjct: 27 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVEGE 83 >gi|217971871|ref|YP_002356622.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS223] gi|217497006|gb|ACK45199.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223] Length = 219 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ RG + +N +KG+GFI PE + + DVF+H S + + ++ VQND Sbjct: 2 LMDRGVLVRWNDEKGFGFIQPEKN--AAQDVFIHISVLKKMARKPIVGDSILFQTEVQND 59 Query: 61 ANGK---YSAENLKLVPKSS 77 K S E + +V SS Sbjct: 60 GKRKAVIASIEGVAVVAASS 79 >gi|116334042|ref|YP_795569.1| cold shock protein [Lactobacillus brevis ATCC 367] gi|116099389|gb|ABJ64538.1| cold-shock DNA-binding protein family [Lactobacillus brevis ATCC 367] Length = 74 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K YN +G+GFIT T + DVF++ + + G L GQ V + VQ G Sbjct: 4 GKVKSYNEQRGFGFIT----TPADGDVFVYYTGIIGEGFRKLEAGQTVQFVIVQG-MRGP 58 Query: 65 YSAENLKLVPKSSN 78 +A+ +V S+ Sbjct: 59 QAAKVTPVVTASTE 72 >gi|255038900|ref|YP_003089521.1| cold-shock DNA-binding domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951656|gb|ACT96356.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM 18053] Length = 63 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 7/54 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++RG++K++N KG+GFI PE G DVF+H + + ++ E V YD Sbjct: 1 MNRGTVKFFNDTKGFGFIAPE---HGGADVFVHTTGLND----DIRENDSVYYD 47 >gi|51105064|gb|AAT97092.1| Y-box factor-like protein [Lymnaea stagnalis] Length = 219 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI + + E DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 34 GTVKWFNVKSGYGFINRDDTKE---DVFVHQTAIIKNNPRKYLRSVGDGEKVEFDVVEGE 90 >gi|3821923|gb|AAC69703.1| major cold shock protein [Lactobacillus helveticus] Length = 50 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 4/45 (8%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 KG+GFIT GS DVF+H SA+ + G +L EGQ V+YD Q Sbjct: 1 KGFGFIT--GSDNK--DVFVHFSAIKTDGFKSLEEGQKVSYDVEQ 41 >gi|289178440|gb|ADC85686.1| Cold shock protein [Bifidobacterium animalis subsp. lactis BB-12] Length = 168 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G I+W++ KGYGFI + + G DVFL ++A+ G+ N +G V Y ++ Sbjct: 43 GRIRWFDAKKGYGFI----AGDDGKDVFLPQTALPQ-GVRNPRKGAKVEYSVIE 91 >gi|86138853|ref|ZP_01057425.1| cold shock DNA-binding domain protein [Roseobacter sp. MED193] gi|85824500|gb|EAQ44703.1| cold shock DNA-binding domain protein [Roseobacter sp. MED193] Length = 180 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF G +E DVFLH + +GL +L G+ + + + G+ + Sbjct: 108 VKWFNKGKGFGFANIFGRSE---DVFLHVEVLRQSGLADLQPGEALAPRVI-DGKRGQMA 163 Query: 67 AE 68 AE Sbjct: 164 AE 165 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KG+GF+ S G D+ LH + + + G ++ +G + + D G Sbjct: 12 QGLVKWFDPTKGFGFVV---SDLGGPDILLHVNVLRNFGQSSVADGTRIEIVTHRTD-RG 67 Query: 64 KYSAENLKLVP 74 + E L + P Sbjct: 68 VQAVEVLAIHP 78 >gi|325962251|ref|YP_004240157.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] gi|323468338|gb|ADX72023.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] Length = 127 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF+ + E G +VFL +S++ G+ L G V + A+G+ Sbjct: 4 GKVKWYDKEKGFGFL----AGEDGQEVFLPKSSLPE-GVTELKAGTRVEFGV----ADGR 54 Query: 65 YSAENLKL 72 A+ L L Sbjct: 55 KGAQALGL 62 >gi|304411240|ref|ZP_07392855.1| Excalibur domain protein [Shewanella baltica OS183] gi|307306535|ref|ZP_07586278.1| Excalibur domain protein [Shewanella baltica BA175] gi|304350433|gb|EFM14836.1| Excalibur domain protein [Shewanella baltica OS183] gi|306910826|gb|EFN41254.1| Excalibur domain protein [Shewanella baltica BA175] Length = 219 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ RG + +N +KG+GFI PE + + DVF+H S + + ++ VQND Sbjct: 2 LMDRGVLVRWNDEKGFGFIQPEKN--AAQDVFIHISVLKKMARKPIVGDSILFQTEVQND 59 Query: 61 ANGK---YSAENLKLVPKSS 77 K S E + +V SS Sbjct: 60 GKRKAVIASIEGVAVVAASS 79 >gi|300676881|gb|ADK26753.1| lin-28 homolog B [Zonotrichia albicollis] Length = 245 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS ES DVF+H+S + G +L EG+ V + + Sbjct: 27 GHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTF 82 >gi|229816847|ref|ZP_04447129.1| hypothetical protein BIFANG_02095 [Bifidobacterium angulatum DSM 20098] gi|229785863|gb|EEP21977.1| hypothetical protein BIFANG_02095 [Bifidobacterium angulatum DSM 20098] Length = 129 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G ++W++ KGYGFI ++E G+DVFL +A+ AG L + V Y + Sbjct: 4 GRVRWFDAAKGYGFI----ASEKGEDVFLPAAAL-PAGTTTLRKNAKVEYAVI 51 >gi|321477873|gb|EFX88831.1| hypothetical protein DAPPUDRAFT_311200 [Daphnia pulex] Length = 322 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYV 57 G +KW+N GYGFI ++ +D+F+H++A++ + ++ +G++V +D V Sbjct: 26 GVVKWFNVKSGYGFIN---RNDTKEDIFVHQTAISRNNPRKAVRSVGDGEIVEFDVV 79 >gi|324511273|gb|ADY44699.1| Y-box factor [Ascaris suum] Length = 269 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 G +KWY+ YGFI + + +DVF+H++A+A + L +L EG+ V +D V+ Sbjct: 80 GKVKWYSVRYHYGFIARD--DDVANDVFVHQTAIAKSRMVKYYLRSLEEGEEVLFDIVE 136 >gi|301513705|ref|ZP_07238942.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB058] gi|301598130|ref|ZP_07243138.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB059] Length = 61 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +N KG+GFI T+ G DVF H S + + G L EGQ V + Q Sbjct: 1 FNETKGFGFI----QTDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQ 45 >gi|209885160|ref|YP_002289017.1| cold-shock DNA-binding domain protein [Oligotropha carboxidovorans OM5] gi|209873356|gb|ACI93152.1| cold-shock DNA-binding domain protein [Oligotropha carboxidovorans OM5] Length = 191 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +G+GF++ E D+F+H + G+ L GQ V Y Sbjct: 116 LERAQVKWFNRLRGFGFVS---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRY 167 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KGYGFI P+ D+ LH + + G EG + + VQ Sbjct: 27 GVIKWFDASKGYGFIVPDNGLP---DILLHVTVLRRDGYQTAYEGARLICECVQRQ 79 >gi|111182511|gb|ABH07676.1| cold-shock domain protein [Scophthalmus maximus] Length = 297 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97 >gi|73950970|ref|XP_855993.1| PREDICTED: similar to Nuclease sensitive element binding protein 1 (Y-box binding protein-1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB)... isoform [Canis familiaris] Length = 305 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGF+ ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 63 GTVKWFNVRNGYGFLN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119 >gi|27379521|ref|NP_771050.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27352673|dbj|BAC49675.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 224 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 VH G IKW++ KGYGFI P+ DV LH + + G EG + + +Q Sbjct: 58 VH-GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGFQTAYEGARIVVECIQR 111 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V + Sbjct: 149 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRF 200 >gi|306835559|ref|ZP_07468572.1| cold-shock domain family protein [Corynebacterium accolens ATCC 49726] gi|304568559|gb|EFM44111.1| cold-shock domain family protein [Corynebacterium accolens ATCC 49726] Length = 126 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF++ G +DV++ R+ V G+ + GQ + +D+ A G+ Sbjct: 4 GKVKWYDAEKGFGFVSNPGD----EDVYVGRN-VLPQGVEEIFPGQRIEFDF----AAGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 RGPQALRV 62 >gi|30248726|ref|NP_840796.1| cold shock DNA-binding domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30180321|emb|CAD84628.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718] Length = 204 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 7/74 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQN 59 M ++G I + DKG+GF+TP G G+ +F+H ++ +S EG +LVTY+ + Sbjct: 1 MRYQGRITTWKDDKGFGFVTPNG---GGEQIFVHINSFSSRQ--RRPEGNELVTYE-LTV 54 Query: 60 DANGKYSAENLKLV 73 D+ G+ A+ + V Sbjct: 55 DSKGRSQAKAVAFV 68 >gi|227501406|ref|ZP_03931455.1| cold shock protein [Corynebacterium accolens ATCC 49725] gi|227077431|gb|EEI15394.1| cold shock protein [Corynebacterium accolens ATCC 49725] Length = 126 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ +KG+GF++ G +DV++ R+ V G+ + GQ + +D+ A G+ Sbjct: 4 GKVKWYDAEKGFGFVSNPGD----EDVYVGRN-VLPKGVEEIFPGQRIEFDF----AAGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 RGPQALRV 62 >gi|227539041|ref|ZP_03969090.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241097|gb|EEI91112.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300] Length = 63 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K++N KG+GFITP+ + D+F+H + + + + EG VTY+ V+ Sbjct: 1 MNTGTVKFFNETKGFGFITPQ---DGSGDIFVHTTGLKN----QVREGDEVTYE-VERTP 52 Query: 62 NGKYSAENLKL 72 G +A N++L Sbjct: 53 KG-LNAINVRL 62 >gi|3121935|sp|Q56922|CSPA_YEREN RecName: Full=Major cold shock protein gi|1402789|gb|AAC80259.1| major cold-shock protein [Yersinia enterocolitica] Length = 46 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 DKG+GFITP + DVF+H SA+ S L EGQ V + Sbjct: 1 DKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEF 39 >gi|118575691|ref|YP_875434.1| cold-shock protein [Cenarchaeum symbiosum A] gi|118194212|gb|ABK77130.1| cold-shock protein [Cenarchaeum symbiosum A] Length = 63 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 8/54 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++KW+N +G+GFI E+G D+F+H++ + NL +G V ++ Sbjct: 1 MEQGTVKWFNRTRGFGFI----ERETGADLFVHKTNIDG----NLRDGDKVEFE 46 >gi|47220428|emb|CAG03208.1| unnamed protein product [Tetraodon nigroviridis] Length = 298 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97 >gi|126175891|ref|YP_001052040.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS155] gi|125999096|gb|ABN63171.1| cold-shock DNA-binding protein family [Shewanella baltica OS155] Length = 203 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ RG + +N +KG+GFI PE + + DVF+H S + + ++ VQND Sbjct: 2 LMDRGVLVRWNDEKGFGFIQPEKN--AAQDVFIHISVLKKMARKPIVGDSILFQTEVQND 59 Query: 61 ANGK---YSAENLKLVPKSS 77 K S E + ++ SS Sbjct: 60 GKRKAVIASIEGVAVIAASS 79 >gi|118082706|ref|XP_422970.2| PREDICTED: hypothetical protein [Gallus gallus] gi|326912009|ref|XP_003202347.1| PREDICTED: cold shock domain-containing protein C2-like [Meleagris gallopavo] Length = 153 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 +++G K ++ +G+GFITPE TE D+F+H S + G + EG VTY Sbjct: 68 IYKGVCKQFSRSQGHGFITPENGTE---DIFVHVSDI--EGEYVPVEGDEVTYKVCPIPP 122 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 123 KNQKFQAVEVVL 134 >gi|114765321|ref|ZP_01444438.1| cold shock DNA-binding domain protein [Pelagibaca bermudensis HTCC2601] gi|114542301|gb|EAU45330.1| cold shock DNA-binding domain protein [Roseovarius sp. HTCC2601] Length = 180 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GF+ + E G D+ LH + + + G ++ +G + Q G Sbjct: 17 GKVKWFDPVKGFGFVI---ADEGGPDILLHANVLRNFGQSSVADGARIEVS-AQRTERGI 72 Query: 65 YSAENLKLVPKSS 77 + E ++ P + Sbjct: 73 QATEVRRIEPPEA 85 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G + DDVF+H + +GL +L G+ + + N G+ + Sbjct: 112 VKWFDKAKGFGFANVFGRS---DDVFIHIEVLRRSGLADLQPGEALAIRVI-NGKRGQMA 167 Query: 67 AE 68 E Sbjct: 168 TE 169 >gi|73950968|ref|XP_848371.1| PREDICTED: similar to Nuclease sensitive element binding protein 1 (Y-box binding protein-1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB)... isoform [Canis familiaris] gi|73950976|ref|XP_856109.1| PREDICTED: similar to Nuclease sensitive element binding protein 1 (Y-box binding protein-1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB)... isoform [Canis familiaris] Length = 326 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGF+ ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 63 GTVKWFNVRNGYGFLN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119 >gi|91081961|ref|XP_966594.1| PREDICTED: similar to Y-box binding protein isoform 1 [Tribolium castaneum] gi|270007364|gb|EFA03812.1| hypothetical protein TcasGA2_TC013925 [Tribolium castaneum] Length = 297 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+ + ++ +G++V + V Sbjct: 31 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVV 84 >gi|83814564|ref|YP_446548.1| hypothetical protein SRU_2449 [Salinibacter ruber DSM 13855] gi|294508486|ref|YP_003572544.1| Cold shock-like protein cspC [Salinibacter ruber M8] gi|83755958|gb|ABC44071.1| conserved domain protein [Salinibacter ruber DSM 13855] gi|294344814|emb|CBH25592.1| Cold shock-like protein cspC [Salinibacter ruber M8] Length = 75 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 6/61 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA--SAGLFNLTEGQLVTYDYVQN 59 + +G +K+++ +G+GFI P +E DVFLH + ++ ++G +L EGQ + Y+ Q Sbjct: 1 MEKGKLKFFDTSRGFGFIEPLDGSE---DVFLHANNISGMTSGE-DLREGQTIEYETEQT 56 Query: 60 D 60 + Sbjct: 57 E 57 >gi|253575315|ref|ZP_04852653.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845312|gb|EES73322.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 109 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 7/69 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G ++ Y D+G+GFI E G DV H +AV A L G VT++ + D GK Sbjct: 47 GYVRRYYDDRGFGFI----GREDGSDVHFHINAVQGAD--KLRTGDRVTFE-IGEDKRGK 99 Query: 65 YSAENLKLV 73 +A+N++L Sbjct: 100 PTAKNVRLA 108 >gi|167045316|gb|ABZ09974.1| putative cold-shock DNA-binding domain protein [uncultured marine crenarchaeote HF4000_APKG9P22] Length = 64 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++KW+N KG+GFI EG + D+F+H++ V Sbjct: 4 GTVKWFNQTKGFGFIEREGEAK---DLFVHKTEV 34 >gi|326802047|ref|YP_004319866.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] gi|326552811|gb|ADZ81196.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] Length = 63 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +K++N KG+GFITP+ + G ++F+H S + + E V+++ VQ Sbjct: 1 MQKGIVKFFNETKGFGFITPQ---DGGREIFVHSSGLKD----RIRENDDVSFE-VQQGQ 52 Query: 62 NGKYSAENLKLV 73 G +A N+KL+ Sbjct: 53 KGP-NAVNVKLI 63 >gi|296389633|ref|ZP_06879108.1| hypothetical protein PaerPAb_15856 [Pseudomonas aeruginosa PAb1] Length = 84 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 +WY+ DKG+GFI P+ G++VFLH SA G +G V + DA G+ A Sbjct: 4 RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 56 Query: 68 ENLKL 72 E +L Sbjct: 57 ERARL 61 >gi|260904269|ref|ZP_05912591.1| cold shock protein [Brevibacterium linens BL2] Length = 126 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G +KW++ DKG+GF+ E G FLH S + +T+G + YD V + Sbjct: 4 GRVKWFDVDKGFGFVI----AEDGSQAFLHSSVLPEDA--EVTKGTRLDYDVVDS 52 >gi|189054669|dbj|BAG37519.1| unnamed protein product [Homo sapiens] Length = 364 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 96 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152 >gi|114666139|ref|XP_511973.2| PREDICTED: y-box-binding protein 2 [Pan troglodytes] Length = 365 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 97 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153 >gi|126662142|ref|ZP_01733141.1| cold shock protein [Flavobacteria bacterium BAL38] gi|126625521|gb|EAZ96210.1| cold shock protein [Flavobacteria bacterium BAL38] Length = 148 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 7/51 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G+I ++N KG+GFI + E+G+ F+H S + L ++ EG LVTYD Sbjct: 89 GTIDFFNDSKGFGFIK---AVETGEKYFVHISGL----LDDVKEGNLVTYD 132 >gi|91081963|ref|XP_975913.1| PREDICTED: similar to Y-box binding protein isoform 2 [Tribolium castaneum] Length = 286 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H+SA+ + ++ +G++V + V Sbjct: 31 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVV 84 >gi|73950974|ref|XP_856066.1| PREDICTED: similar to Nuclease sensitive element binding protein 1 (Y-box binding protein-1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB)... isoform [Canis familiaris] Length = 314 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGF+ ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 63 GTVKWFNVRNGYGFLN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119 >gi|45382293|ref|NP_990737.1| Rous sarcoma virus transcription enhancer factor II [Gallus gallus] gi|727428|gb|AAA64706.1| Rous sarcoma virus transcription enhancer factor II [Gallus gallus] Length = 298 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 90 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLASVGDGETVEFDVVEGE 146 >gi|83591523|ref|YP_425275.1| cold-shock DNA-binding protein family protein [Rhodospirillum rubrum ATCC 11170] gi|83574437|gb|ABC20988.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC 11170] Length = 882 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++K Y+P KG G+I P+G G D+ + ++ + + G+ L + V + D G Sbjct: 819 RGTVKHYDPIKGRGYIIPDG---KGSDILIEKAVLKACGMGRLKKNDRVV--VITKDQGG 873 Query: 64 KYSAENLK 71 K A +++ Sbjct: 874 KPVAIDVR 881 >gi|312083329|ref|XP_003143816.1| hypothetical protein LOAG_08235 [Loa loa] gi|307761020|gb|EFO20254.1| hypothetical protein LOAG_08235 [Loa loa] Length = 310 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 8/60 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-----LTEGQLVTYDYVQ 58 +G +KWY+ YGFI + + G+DVF+H++A+ + + L +G+ V +D V+ Sbjct: 77 KGRVKWYSVRFHYGFIARD---DKGNDVFVHQTAITKSRIIKYYLRTLGDGEEVLFDIVE 133 >gi|300676769|gb|ADK26645.1| lin-28 homolog B [Zonotrichia albicollis] Length = 245 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS ES DVF+H+S + G +L EG+ V + + Sbjct: 27 GHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTF 82 >gi|218463829|ref|ZP_03503920.1| cold-shock DNA-binding domain-containing protein [Rhizobium etli Kim 5] Length = 54 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 26/48 (54%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE 48 M G++K++N DKG+GFI PE +G F + GL LTE Sbjct: 1 MAETGTVKFFNTDKGFGFIKPEPGAAAGYISFHNFCRPRPPGLAGLTE 48 >gi|167042126|gb|ABZ06860.1| putative cold-shock DNA-binding domain protein [uncultured marine crenarchaeote HF4000_ANIW93E5] Length = 69 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 7/51 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++KW+N KG+GFI EG + D+F+H++ V +++G V ++ Sbjct: 9 GTVKWFNQTKGFGFIEREGDEK---DLFVHKTEVEGT----ISDGDKVEFE 52 >gi|156415990|ref|NP_057066.2| Y-box-binding protein 2 [Homo sapiens] gi|116242847|sp|Q9Y2T7|YBOX2_HUMAN RecName: Full=Y-box-binding protein 2; AltName: Full=Contrin; AltName: Full=DNA-binding protein C; Short=Dbpc; AltName: Full=Germ cell-specific Y-box-binding protein; AltName: Full=MSY2 homolog gi|21707292|gb|AAH33800.1| Y box binding protein 2 [Homo sapiens] Length = 364 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 96 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152 >gi|76802909|ref|YP_331004.1| cold shock protein [Natronomonas pharaonis DSM 2160] gi|76558774|emb|CAI50367.1| probable cold shock protein [Natronomonas pharaonis DSM 2160] Length = 64 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G + ++N GYGFI + ES +DVF H + +L EGQ V +D Q D Sbjct: 3 KGEVDFFNDTGGYGFID---TDESDEDVFFHMEDIGGP---DLEEGQEVEFDIEQAD 53 >gi|4837737|gb|AAD30662.1| germ cell specific Y-box binding protein [Homo sapiens] gi|28838612|gb|AAH47760.1| Y box binding protein 2 [Homo sapiens] gi|119610629|gb|EAW90223.1| Y box binding protein 2, isoform CRA_a [Homo sapiens] gi|119610630|gb|EAW90224.1| Y box binding protein 2, isoform CRA_a [Homo sapiens] Length = 364 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 96 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152 >gi|89054965|ref|YP_510416.1| cold-shock DNA-binding protein family protein [Jannaschia sp. CCS1] gi|88864514|gb|ABD55391.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1] Length = 181 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GF+ S E G D+ LH + + S G ++ EG V Q G Sbjct: 24 GVVKWFDTTKGFGFVL---SDEGGPDILLHANVLRSFGRGSIAEGARVML-RTQATGRGL 79 Query: 65 YSAENLKL 72 + E + + Sbjct: 80 QAVEIIAI 87 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G +E DVF+H + +G L G+ V V + G+ + Sbjct: 117 VKWFDKAKGFGFANVFGHSE---DVFVHVEVLRRSGFTELQPGEAVAMKVV-DGPRGRMA 172 Query: 67 AE 68 AE Sbjct: 173 AE 174 >gi|193212293|ref|YP_001998246.1| cold-shock DNA-binding domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193085770|gb|ACF11046.1| cold-shock DNA-binding domain protein [Chlorobaculum parvum NCIB 8327] Length = 88 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 5/44 (11%) Query: 4 RGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNL 46 + +KW++ KGYGFI P+G G+D+F+H SA+ S F + Sbjct: 3 KSKVKWFDGKKGYGFILNPDG----GEDIFVHFSAIISDQSFKV 42 >gi|171743331|ref|ZP_02919138.1| hypothetical protein BIFDEN_02462 [Bifidobacterium dentium ATCC 27678] gi|306823276|ref|ZP_07456652.1| cold-shock domain family protein [Bifidobacterium dentium ATCC 27679] gi|309801917|ref|ZP_07696032.1| cold-shock DNA-binding domain protein [Bifidobacterium dentium JCVIHMP022] gi|171278945|gb|EDT46606.1| hypothetical protein BIFDEN_02462 [Bifidobacterium dentium ATCC 27678] gi|304553908|gb|EFM41819.1| cold-shock domain family protein [Bifidobacterium dentium ATCC 27679] gi|308221473|gb|EFO77770.1| cold-shock DNA-binding domain protein [Bifidobacterium dentium JCVIHMP022] Length = 129 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G ++W++ +KGYGFI E G DVFL A+ G+ L +G V Y ++ Sbjct: 4 GRVRWFDTNKGYGFI----QNEQGADVFLPAVALPE-GVKTLRKGAKVEYSVIE 52 >gi|120435933|ref|YP_861619.1| cold shock-like protein [Gramella forsetii KT0803] gi|117578083|emb|CAL66552.1| cold shock-like protein [Gramella forsetii KT0803] Length = 64 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 + G +K++N KG+GFI EGS E D+F+H S + Sbjct: 1 MQEGKVKFFNNTKGFGFIQAEGSNE---DIFVHSSGL 34 >gi|14270385|emb|CAC39432.1| cold-shock domain protein [Takifugu rubripes] Length = 263 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 24 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 80 >gi|241190702|ref|YP_002968096.1| cold shock protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196108|ref|YP_002969663.1| cold shock protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|240249094|gb|ACS46034.1| cold shock protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250662|gb|ACS47601.1| cold shock protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793691|gb|ADG33226.1| cold shock protein [Bifidobacterium animalis subsp. lactis V9] Length = 147 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G I+W++ KGYGFI + + G DVFL ++A+ G+ N +G V Y ++ Sbjct: 22 GRIRWFDAKKGYGFI----AGDDGKDVFLPQTALPQ-GVRNPRKGAKVEYSVIE 70 >gi|256089134|ref|XP_002580671.1| Y box binding protein [Schistosoma mansoni] gi|238666270|emb|CAZ36910.1| Y box binding protein, putative [Schistosoma mansoni] Length = 167 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|56754985|gb|AAW25675.1| SJCHGC00971 protein [Schistosoma japonicum] Length = 250 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 7/67 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DANGKYS 66 D + S Sbjct: 84 DKGDEAS 90 >gi|114046090|ref|YP_736640.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-7] gi|113887532|gb|ABI41583.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7] Length = 197 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG + +N +KG+GFI PE S G DVF+H + + L ++ +QND Sbjct: 1 MERGILVRWNDEKGFGFIQPEDS--KGKDVFIHITVLKHMARKPLVGDSILYRTEIQNDG 58 Query: 62 NGK 64 K Sbjct: 59 KVK 61 >gi|315654218|ref|ZP_07907126.1| cold-shock domain family protein [Mobiluncus curtisii ATCC 51333] gi|315657883|ref|ZP_07910763.1| cold-shock domain family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491253|gb|EFU80870.1| cold-shock domain family protein [Mobiluncus curtisii ATCC 51333] gi|315491680|gb|EFU81291.1| cold-shock domain family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 125 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ KG+GF+ + G++VFLH SA+ + +L G V Y V D Sbjct: 4 GKVKWYDAVKGFGFV----AGADGEEVFLHASALPE-NVVDLHPGTKVEYSVV--DGKRG 56 Query: 65 YSAENLKLVPK 75 A N+ +V K Sbjct: 57 RQAMNVTVVEK 67 >gi|298345620|ref|YP_003718307.1| cold-shock DNA-binding domain-containing protein [Mobiluncus curtisii ATCC 43063] gi|304390691|ref|ZP_07372644.1| cold-shock domain family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235681|gb|ADI66813.1| cold-shock DNA-binding domain protein [Mobiluncus curtisii ATCC 43063] gi|304326447|gb|EFL93692.1| cold-shock domain family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 125 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ KG+GF+ + G++VFLH SA+ + +L G V Y V D Sbjct: 4 GKVKWYDAVKGFGFV----AGADGEEVFLHASALPE-NVVDLHPGTKVEYSVV--DGKRG 56 Query: 65 YSAENLKLVPK 75 A N+ +V K Sbjct: 57 RQAMNVTVVEK 67 >gi|316934326|ref|YP_004109308.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315602040|gb|ADU44575.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 231 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V + Sbjct: 156 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRF 207 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KGYGF+ P+ DV LH + + G EG + + VQ Sbjct: 67 GFIKWFDASKGYGFVVPDNGW---PDVLLHVTVLRRDGYQTAYEGARIVVECVQR 118 >gi|262373361|ref|ZP_06066640.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] gi|262313386|gb|EEY94471.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] Length = 97 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 12/73 (16%) Query: 3 HRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60 ++G +K YNPDKG+GFI T EG D+F H S AS G E +V + Sbjct: 6 YQGKVKQYNPDKGFGFIATTEG------DIFFHISDFPASEGEPKRNE----KVKFVALE 55 Query: 61 ANGKYSAENLKLV 73 NGK+ A ++ V Sbjct: 56 NNGKFKAVQIERV 68 >gi|149176125|ref|ZP_01854741.1| cold-shock DNA-binding domain protein [Planctomyces maris DSM 8797] gi|148844992|gb|EDL59339.1| cold-shock DNA-binding domain protein [Planctomyces maris DSM 8797] Length = 66 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G IK D+G+GFI E D+F H S V L L EGQ+V Y+ Q Sbjct: 3 QGKIKRIVSDRGFGFIEGERG-----DLFFHYSEVQGVTLEELQEGQMVEYEVGQG 53 >gi|289580237|ref|YP_003478703.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] gi|289529790|gb|ADD04141.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] Length = 64 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++ ++N GYGFI E ++ DDVF H V +L EGQ + +D Q D Sbjct: 3 KGTVDFFNDTGGYGFIETE---DADDDVFFHMEDVGGP---DLEEGQELEFDIEQAD 53 >gi|224048372|ref|XP_002196412.1| PREDICTED: lin-28 homolog B [Taeniopygia guttata] Length = 258 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS ES DVF+H+S + G +L EG+ V + + Sbjct: 40 GHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTF 95 >gi|170749143|ref|YP_001755403.1| cold-shock DNA-binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170655665|gb|ACB24720.1| cold-shock DNA-binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 201 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KG+GFI P+ + D+ LH + + G +EG + + V+ Sbjct: 38 GRIKWFDVSKGFGFIVPD---DGAPDILLHVTCLRRDGYQAASEGARIVVEAVER 89 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +G+GF+T T D+F+H + G+ L G+ V Y D + Sbjct: 132 VKWFNRLRGFGFLTRGDGTP---DIFVHMETLRRYGIAELKPGESVLVRY--GDGSKGVM 186 Query: 67 AENLKLV 73 A ++L+ Sbjct: 187 AAEVRLI 193 >gi|126343688|ref|XP_001363729.1| PREDICTED: similar to Cold shock domain containing C2, RNA binding [Monodelphis domestica] Length = 154 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE TE D+F+H S + G + EG VTY Sbjct: 69 VFKGVCKQFSRSQGHGFITPENGTE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 123 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 124 KNQKFQAVEVVL 135 >gi|322368663|ref|ZP_08043230.1| cold shock protein [Haladaptatus paucihalophilus DX253] gi|320551394|gb|EFW93041.1| cold shock protein [Haladaptatus paucihalophilus DX253] Length = 64 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++ ++N GYGFI + ++ DDVF H V +L EGQ V +D Q D Sbjct: 3 KGTVTFFNDTGGYGFIE---TDDADDDVFFHMEDVGGP---DLEEGQEVEFDIEQAD 53 >gi|327284528|ref|XP_003226989.1| PREDICTED: protein lin-28 homolog B-like [Anolis carolinensis] Length = 320 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS +S DVF+H+S + G +L EG+ V + + Sbjct: 102 GHCKWFNVRMGFGFISMLHREGSPLDSPVDVFVHQSKLYMEGFRSLKEGEPVEFTF 157 >gi|221116635|ref|XP_002154000.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 719 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 449 GTVKWFNVRNGYGFI---HRNDTQNDVFVHQTAIVKNNPNKYLRSVGDGETVEFDVVE 503 >gi|149725937|ref|XP_001492855.1| PREDICTED: similar to Calcium regulated heat stable protein 1, 24kDa [Equus caballus] Length = 147 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 109 >gi|332266403|ref|XP_003282197.1| PREDICTED: y-box-binding protein 2-like [Nomascus leucogenys] Length = 430 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 169 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 225 >gi|327402091|ref|YP_004342929.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM 16823] gi|327317599|gb|AEA42091.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM 16823] Length = 148 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 7/54 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +G++ +YN KGYGFI + SGD +F+H + + +TEG V+++ Sbjct: 86 IRQGTVTFYNDSKGYGFIK---DSTSGDSIFVHANQLTET----ITEGNRVSFE 132 >gi|296224861|ref|XP_002758248.1| PREDICTED: calcium-regulated heat stable protein 1-like [Callithrix jacchus] Length = 147 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMC 112 >gi|254000354|ref|YP_003052417.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. SIP3-4] gi|253987033|gb|ACT51890.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4] Length = 201 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 7/74 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQN 59 M ++G I + +G+GFITP G GD VFLH SA + EG +LVTY+ Sbjct: 1 MRYQGRITTWKDKQGFGFITPNG---GGDPVFLHISAFSHRK--RRPEGDELVTYERTL- 54 Query: 60 DANGKYSAENLKLV 73 DA G+ A + V Sbjct: 55 DAKGRPHALKVAFV 68 >gi|255078512|ref|XP_002502836.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299] gi|226518102|gb|ACO64094.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299] Length = 305 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++G + W+N KG+GF+T + DVF+H+S + + G +L + + V ++ ++ + Sbjct: 44 YKGVVNWFNVAKGFGFVTRDDGV---GDVFVHQSDIYAEGFRSLRDQEPVEFE-LEPMGD 99 Query: 63 GKYSA 67 G+Y A Sbjct: 100 GRYKA 104 >gi|4583307|gb|AAD25021.1|AF115345_1 calcium-regulated heat stable protein CRHSP-24 [Homo sapiens] Length = 147 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 109 >gi|149409245|ref|XP_001506560.1| PREDICTED: similar to transforming, acidic coiled-coil containing protein 3 [Ornithorhynchus anatinus] Length = 154 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 69 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMC 119 >gi|218676684|ref|YP_002395503.1| hypothetical protein VS_II0921 [Vibrio splendidus LGP32] gi|218324952|emb|CAV26780.1| Hypothetical protein VS_II0921 [Vibrio splendidus LGP32] Length = 81 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 RG I W++ + G+GF P + GD DV +H S + G NL EGQ V + + Sbjct: 5 RGYITWFHLENGFGFAKP----DHGDIDVLIHISIIEFDGEINLEEGQRVYLELEEVKDK 60 Query: 63 GKYSAENLKLVP 74 ++A +K++P Sbjct: 61 PHWNA--VKVLP 70 >gi|301768643|ref|XP_002919738.1| PREDICTED: calcium-regulated heat stable protein 1-like [Ailuropoda melanoleuca] gi|281342656|gb|EFB18240.1| hypothetical protein PANDA_008393 [Ailuropoda melanoleuca] Length = 147 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 109 >gi|224095946|ref|XP_002188961.1| PREDICTED: Rous sarcoma virus transcription enhancer factor II [Taeniopygia guttata] Length = 420 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 213 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 269 >gi|109715854|ref|NP_001035941.1| calcium-regulated heat stable protein 1 [Homo sapiens] gi|109715858|ref|NP_055131.2| calcium-regulated heat stable protein 1 [Homo sapiens] gi|114660916|ref|XP_001137922.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 6 [Pan troglodytes] gi|114660918|ref|XP_001138007.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 7 [Pan troglodytes] gi|114660920|ref|XP_001137407.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 1 [Pan troglodytes] gi|114660922|ref|XP_001137655.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3 [Pan troglodytes] gi|114660924|ref|XP_001137742.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 4 [Pan troglodytes] gi|114660926|ref|XP_523291.2| PREDICTED: calcium-regulated heat stable protein 1 isoform 9 [Pan troglodytes] gi|114660928|ref|XP_001137575.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2 [Pan troglodytes] gi|114660930|ref|XP_001138086.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 8 [Pan troglodytes] gi|114660932|ref|XP_001137823.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 5 [Pan troglodytes] gi|332845244|ref|XP_003315008.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan troglodytes] gi|332845246|ref|XP_003315009.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan troglodytes] gi|332845248|ref|XP_003315010.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan troglodytes] gi|332845251|ref|XP_003315011.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan troglodytes] gi|41016932|sp|Q9Y2V2|CHSP1_HUMAN RecName: Full=Calcium-regulated heat stable protein 1; AltName: Full=Calcium-regulated heat-stable protein of 24 kDa; Short=CRHSP-24 gi|315364426|pdb|3AQQ|A Chain A, Crystal Structure Of Human Crhsp-24 gi|315364427|pdb|3AQQ|C Chain C, Crystal Structure Of Human Crhsp-24 gi|315364428|pdb|3AQQ|B Chain B, Crystal Structure Of Human Crhsp-24 gi|315364429|pdb|3AQQ|D Chain D, Crystal Structure Of Human Crhsp-24 gi|13097198|gb|AAH03366.1| Calcium regulated heat stable protein 1, 24kDa [Homo sapiens] gi|82568913|gb|AAI08284.1| Calcium regulated heat stable protein 1, 24kDa [Homo sapiens] gi|119605602|gb|EAW85196.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo sapiens] gi|119605603|gb|EAW85197.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo sapiens] gi|119605604|gb|EAW85198.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo sapiens] gi|119605605|gb|EAW85199.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo sapiens] gi|189053098|dbj|BAG34720.1| unnamed protein product [Homo sapiens] gi|190689713|gb|ACE86631.1| calcium regulated heat stable protein 1, 24kDa protein [synthetic construct] gi|190691077|gb|ACE87313.1| calcium regulated heat stable protein 1, 24kDa protein [synthetic construct] gi|307686115|dbj|BAJ20988.1| calcium regulated heat stable protein 1, 24kDa [synthetic construct] Length = 147 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMC 112 >gi|257386713|ref|YP_003176486.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] gi|257169020|gb|ACV46779.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] Length = 69 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++ ++N GYGFI E ++ DDVF H V +L EGQ + +D Q D Sbjct: 9 GTVDFFNDTGGYGFIETE---DADDDVFFHMEDVGGP---DLEEGQEIEFDIEQAD 58 >gi|126335948|ref|XP_001376438.1| PREDICTED: similar to Nsep1 protein [Monodelphis domestica] Length = 290 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI + + E DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 19 GTVKWFNVRNGYGFINRDDTKE---DVFVHQTAIKKNNPRKYLRSVGDGEPVEFDVVEGE 75 >gi|109127552|ref|XP_001102514.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1 [Macaca mulatta] gi|109127554|ref|XP_001102603.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2 [Macaca mulatta] gi|109127556|ref|XP_001102694.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3 [Macaca mulatta] gi|297283445|ref|XP_002802430.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta] gi|297283448|ref|XP_002802431.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta] gi|297283450|ref|XP_002802432.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta] gi|297283452|ref|XP_002802433.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta] Length = 147 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 109 >gi|119718152|ref|YP_925117.1| cold-shock DNA-binding protein family protein [Nocardioides sp. JS614] gi|119538813|gb|ABL83430.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614] Length = 131 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ +KG+GF+ S E+G DV++ RS AG +L G V + Q Sbjct: 4 GKVKWFDAEKGFGFL----SQENGPDVYV-RSEALPAGTSSLKAGTRVEFGIAQ 52 >gi|22758142|ref|NP_690003.1| calcium-regulated heat stable protein 1 [Rattus norvegicus] gi|41016763|sp|Q9WU49|CHSP1_RAT RecName: Full=Calcium-regulated heat stable protein 1; AltName: Full=Calcium-regulated heat-stable protein of 24 kDa; Short=CRHSP-24 gi|4583309|gb|AAD25022.1|AF115346_1 calcium-regulated heat stable protein CRHSP-24 [Rattus sp.] gi|49522734|gb|AAH71173.1| Calcium regulated heat stable protein 1 [Rattus norvegicus] gi|149042602|gb|EDL96239.1| calcium regulated heat stable protein 1, isoform CRA_a [Rattus norvegicus] Length = 147 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 109 >gi|296219544|ref|XP_002755926.1| PREDICTED: calcium-regulated heat stable protein 1-like [Callithrix jacchus] Length = 147 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMC 112 >gi|260663603|ref|ZP_05864492.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] gi|260551829|gb|EEX24944.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] Length = 70 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +IK Y+P KG+G+IT T DV+ HR A+ + +GQ V VQ Sbjct: 3 QATIKSYDPTKGWGYIT----TPQDGDVYFHRRAIEGRSRVPIQKGQAVEMVIVQ 53 >gi|289607243|emb|CBI60851.1| unnamed protein product [Sordaria macrospora] Length = 194 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG IKW++ +G+GF + S S DV +H S + G L EG +V + + + G Sbjct: 34 RGVIKWFDVTRGFGFAVADDS--SLGDVLIHFSVLEPHGRRTLPEGAIVLCNAARR-SRG 90 Query: 64 KYSAENLKL 72 + E L++ Sbjct: 91 MQAVEILEI 99 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 S+KW+N KGYGF+ +G DVF+H + G+ + Q + V+ Sbjct: 131 SVKWFNRLKGYGFLVRDG---QAGDVFVHMETLRRGGIEEVEPDQRLVARIVE 180 >gi|256089122|ref|XP_002580665.1| cold shock domain protein A [Schistosoma mansoni] gi|238666264|emb|CAZ36904.1| cold shock domain protein A, putative [Schistosoma mansoni] Length = 175 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 3/36 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39 RG +KW+N GYGFIT +++ D+F+H++A++ Sbjct: 19 RGVVKWFNVKAGYGFIT---RSDTSSDIFVHQTAIS 51 >gi|326677327|ref|XP_003200812.1| PREDICTED: protein lin-28 homolog B-like, partial [Danio rerio] Length = 211 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGS----TESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ S + DVF+H+S + G +L EG+ V + + ++ Sbjct: 114 GYCKWFNVRMGFGFISMTSSEGKPVDPPLDVFVHQSKLVMEGFRSLREGEQVEFTFKRS 172 >gi|13385290|ref|NP_080097.1| calcium-regulated heat stable protein 1 [Mus musculus] gi|309264712|ref|XP_003086339.1| PREDICTED: calcium-regulated heat stable protein 1-like [Mus musculus] gi|41016923|sp|Q9CR86|CHSP1_MOUSE RecName: Full=Calcium-regulated heat stable protein 1; AltName: Full=Calcium-regulated heat-stable protein of 24 kDa; Short=CRHSP-24 gi|15778558|gb|AAL07470.1|AF414101_1 calcineurin substrate CRHSP-24 [Mus musculus] gi|12833143|dbj|BAB22408.1| unnamed protein product [Mus musculus] gi|12834885|dbj|BAB23077.1| unnamed protein product [Mus musculus] gi|12836086|dbj|BAB23495.1| unnamed protein product [Mus musculus] gi|15029979|gb|AAH11225.1| Calcium regulated heat stable protein 1 [Mus musculus] gi|56541222|gb|AAH86754.1| Calcium regulated heat stable protein 1 [Mus musculus] gi|74140430|dbj|BAE42365.1| unnamed protein product [Mus musculus] gi|74150621|dbj|BAE25463.1| unnamed protein product [Mus musculus] gi|74196650|dbj|BAE34427.1| unnamed protein product [Mus musculus] gi|74199323|dbj|BAE33186.1| unnamed protein product [Mus musculus] gi|74208059|dbj|BAE29139.1| unnamed protein product [Mus musculus] gi|74213308|dbj|BAE41777.1| unnamed protein product [Mus musculus] gi|74214291|dbj|BAE40388.1| unnamed protein product [Mus musculus] gi|74222561|dbj|BAE38151.1| unnamed protein product [Mus musculus] gi|148664880|gb|EDK97296.1| mCG123718 [Mus musculus] gi|148703087|gb|EDL35034.1| mCG1049436 [Mus musculus] Length = 148 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 63 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 110 >gi|74181788|dbj|BAE32601.1| unnamed protein product [Mus musculus] Length = 148 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 63 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMCSIPP 117 Query: 61 ANGKYSAENLKL 72 N K A L + Sbjct: 118 KNEKLQAVELVI 129 >gi|227514815|ref|ZP_03944864.1| cold shock protein Csp [Lactobacillus fermentum ATCC 14931] gi|227086805|gb|EEI22117.1| cold shock protein Csp [Lactobacillus fermentum ATCC 14931] Length = 70 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +IK Y+P KG+G+IT T DV+ HR A+ + +GQ V VQ Sbjct: 3 QATIKSYDPTKGWGYIT----TPQDGDVYFHRRAIEGRSRVPIQKGQAVEMVIVQ 53 >gi|74213976|dbj|BAE29409.1| unnamed protein product [Mus musculus] Length = 148 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 63 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 110 >gi|127511419|ref|YP_001092616.1| cold-shock DNA-binding domain-containing protein [Shewanella loihica PV-4] gi|126636714|gb|ABO22357.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4] Length = 205 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG++ +N DKG+GFI P +T + DVF+H SA+ + +++ Q+D Sbjct: 1 MERGTLVRWNDDKGFGFIKP--NTPNAQDVFIHISALKQMARKPVVGDEIIYQSQQQSDG 58 Query: 62 NGK 64 K Sbjct: 59 KIK 61 >gi|109898941|ref|YP_662196.1| cold-shock DNA-binding domain-containing protein [Pseudoalteromonas atlantica T6c] gi|109701222|gb|ABG41142.1| cold-shock DNA-binding domain protein [Pseudoalteromonas atlantica T6c] Length = 237 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G + +N DKG+GF+ P G G+ VF+H A +G ++TY+ V+ Sbjct: 1 MRFQGKVFNWNDDKGFGFVEPNG---GGERVFVHIKAFTPRSR-RPVDGDVITYELVRES 56 Query: 61 ANGKYSAENLKL 72 N + AEN++ Sbjct: 57 HN-RCKAENIQF 67 >gi|332240252|ref|XP_003269303.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 1 [Nomascus leucogenys] gi|332240254|ref|XP_003269304.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 2 [Nomascus leucogenys] gi|332240256|ref|XP_003269305.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 3 [Nomascus leucogenys] gi|332240258|ref|XP_003269306.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 4 [Nomascus leucogenys] gi|332240260|ref|XP_003269307.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 5 [Nomascus leucogenys] gi|332240262|ref|XP_003269308.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 6 [Nomascus leucogenys] gi|332240264|ref|XP_003269309.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 7 [Nomascus leucogenys] gi|332240266|ref|XP_003269310.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 8 [Nomascus leucogenys] Length = 147 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 109 >gi|291529654|emb|CBK95240.1| cold-shock DNA-binding protein family [Eubacterium rectale M104/1] Length = 66 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55 G +KW++ KGYGF+T E G D F+H SA+ S F L VT+D Sbjct: 3 GKVKWFSNRKGYGFVTG----EDGQDYFVHFSAIESDKSFKTLHTNADVTFD 50 >gi|76798540|ref|ZP_00780773.1| 'Cold-shock' DNA-binding domain, putative [Streptococcus agalactiae 18RS21] gi|76586104|gb|EAO62629.1| 'Cold-shock' DNA-binding domain, putative [Streptococcus agalactiae 18RS21] Length = 53 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 6/58 (10%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 +GFI S+E+G DVF H S + G L EGQ VT+D +Q+ G A N+ LV Sbjct: 1 FGFI----SSETGTDVFAHFSEIKVDGFKTLEEGQKVTFD-IQDGQRGP-QATNINLV 52 >gi|295096004|emb|CBK85094.1| Cold shock proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 46 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G +KW+ DKG+GFI+P + DVF+H SA+ Sbjct: 7 GLVKWFKEDKGFGFISP---VDGSKDVFVHFSAL 37 >gi|329890044|ref|ZP_08268387.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC 11568] gi|328845345|gb|EGF94909.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC 11568] Length = 173 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KW+N KGYGF+ +G D+F+H + GL +L G V + + Sbjct: 111 VKWFNRTKGYGFVVRDGQA---GDIFVHVETLRRCGLDDLLPGDPVNVRFAE 159 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G +KW++ KGYGFI P+ + + DV LH +++ AG EG + + + Sbjct: 11 GRVKWFDAGKGYGFIVPDQPDLTEERDVLLHVTSLRDAGHEMAGEGAAIVCECAKR 66 >gi|47563679|dbj|BAD20296.1| cold shock protein like [Pseudomonas fluorescens] Length = 37 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 4/34 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++KW+N KGYGFI E G DVF+H A+ Sbjct: 7 GNVKWFNDAKGYGFI----QREDGKDVFVHYRAI 36 >gi|61837945|ref|XP_606503.1| PREDICTED: cold shock domain protein A short-like [Bos taurus] gi|297493193|ref|XP_002700192.1| PREDICTED: cold shock domain protein A short-like [Bos taurus] gi|296470652|gb|DAA12767.1| cold shock domain protein A short-like [Bos taurus] Length = 323 Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQND 60 G++ W+ KGYGFI+ + + E DVF+H +A+ ++ +G++V +D VQ + Sbjct: 70 GTVVWFKEKKGYGFISRQDTQE---DVFVHHTAITGKNPCTYRGSVDDGEMVEFDVVQGE 126 >gi|114051954|ref|NP_001039416.1| calcium-regulated heat stable protein 1 [Bos taurus] gi|84201642|gb|AAI11638.1| Calcium regulated heat stable protein 1, 24kDa [Bos taurus] gi|296473437|gb|DAA15552.1| calcium regulated heat stable protein 1, 24kDa [Bos taurus] Length = 147 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPMEGDEVTY 109 >gi|86132446|ref|ZP_01051040.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] gi|85817007|gb|EAQ38191.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] Length = 64 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 6/51 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++K++N KGYGFIT + E+G D+F+H + + + EG V Y Sbjct: 2 EGTVKFFNESKGYGFITND---ETGKDIFVHVTGLNGE---TINEGDKVEY 46 >gi|226371922|gb|ACO51586.1| Calcium-regulated heat stable protein 1 [Rana catesbeiana] Length = 150 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V++G K ++ KG+GFI PE + G DVFLH S + G + EG VT+ Sbjct: 65 VYKGVCKCFSRSKGHGFIIPE---DGGPDVFLHISDI--EGEYVPVEGDEVTF 112 >gi|184155059|ref|YP_001843399.1| putative cold shock protein [Lactobacillus fermentum IFO 3956] gi|183226403|dbj|BAG26919.1| putative cold shock protein [Lactobacillus fermentum IFO 3956] Length = 70 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +IK Y+P KG+G+IT T DV+ HR A+ + +GQ V VQ Sbjct: 3 QATIKSYDPTKGWGYIT----TPQDGDVYFHRRAIEGRSRVPIQKGQAVEMVIVQ 53 >gi|186471680|ref|YP_001862998.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184197989|gb|ACC75952.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 61 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 GF SGDD+F H S V + G +L EGQ V++D V+ GK +A Sbjct: 7 GFWVHHTGRRSGDDLFAHFSEVQAQGFKSLQEGQRVSFD-VKQGPKGKQAA 56 >gi|310815595|ref|YP_003963559.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium vulgare Y25] gi|308754330|gb|ADO42259.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium vulgare Y25] Length = 176 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KWY+ KG+GFI P+G + D+ LH + + GL ++ EG +T V G Sbjct: 14 GHVKWYDATKGFGFIVDPQGRS----DILLHANVLRRFGLNSVGEGIEITV-LVSRTPKG 68 Query: 64 KYSAENLKL 72 + E L + Sbjct: 69 AQAIEILAV 77 >gi|163753583|ref|ZP_02160706.1| cold shock protein, DNA-binding [Kordia algicida OT-1] gi|161325797|gb|EDP97123.1| cold shock protein, DNA-binding [Kordia algicida OT-1] Length = 64 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 15/32 (46%), Positives = 25/32 (78%), Gaps = 3/32 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36 G++K++N DKG+GFIT + ++G D+F+H S Sbjct: 3 GTVKFFNEDKGFGFITND---DTGKDIFVHVS 31 >gi|255025943|ref|ZP_05297929.1| major cold-shock protein [Listeria monocytogenes FSL J2-003] Length = 28 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 4/32 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFL 33 + G++KW+N +KG+GFI EG GDDVF+ Sbjct: 1 MQTGTVKWFNSEKGFGFIEVEG----GDDVFV 28 >gi|146300393|ref|YP_001194984.1| cold-shock DNA-binding domain-containing protein [Flavobacterium johnsoniae UW101] gi|146154811|gb|ABQ05665.1| cold-shock DNA-binding protein family [Flavobacterium johnsoniae UW101] Length = 63 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 7/54 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G++K++N +KG+GFITP G +VF+H S ++ + + + V YD Sbjct: 1 MQEGTVKFFNEEKGFGFITP---NNGGAEVFVHASGLSES----IRQDDAVRYD 47 >gi|112982792|ref|NP_001036897.1| Y-box protein [Bombyx mori] gi|49532669|dbj|BAD26606.1| Y-box protein [Bombyx mori] Length = 259 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39 G++KW+N GYGFI ++ +DVF+H++A+A Sbjct: 40 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQTAIA 71 >gi|302876681|ref|YP_003845314.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|307687356|ref|ZP_07629802.1| cold shock protein [Clostridium cellulovorans 743B] gi|302579538|gb|ADL53550.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans 743B] Length = 69 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60 G +KW++ ++GYGFI S G D ++H S V +L EG+ V YD V+ + Sbjct: 6 GVVKWFDNERGYGFI----SGNEGMDAYVHHSQVKEKTHNKDLHEGESVKYDMVETN 58 >gi|61217666|sp|Q9Z2C8|YBOX2_MOUSE RecName: Full=Y-box-binding protein 2; AltName: Full=FRGY2 homolog; AltName: Full=Germ cell-specific Y-box-binding protein gi|4071321|gb|AAC98673.1| Y-box protein MSY2 [Mus musculus] Length = 360 Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 7/64 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 98 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154 Query: 61 ANGK 64 + Sbjct: 155 KGAR 158 >gi|110598385|ref|ZP_01386658.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] gi|110339994|gb|EAT58496.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] Length = 85 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 5/41 (12%) Query: 7 IKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNL 46 +KW++ KGYGFI P+G G+D+F+H SA+ S F + Sbjct: 6 VKWFDGKKGYGFILNPDG----GEDIFVHFSAILSEQSFKV 42 >gi|4071323|gb|AAC98674.1| Y-box protein MSY2 isoform a [Mus musculus] Length = 282 Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 7/64 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 20 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 76 Query: 61 ANGK 64 + Sbjct: 77 KGAR 80 >gi|152999199|ref|YP_001364880.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS185] gi|151363817|gb|ABS06817.1| putative cold-shock DNA-binding domain protein [Shewanella baltica OS185] Length = 217 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ RG + +N +KG+GFI PE + + DVF+H S + + ++ VQND Sbjct: 2 LMDRGVLVRWNDEKGFGFIQPEKN--AAQDVFIHISVLKKMARKPIVGDSILYQTEVQND 59 Query: 61 ANGK 64 K Sbjct: 60 GKRK 63 >gi|73959197|ref|XP_852743.1| PREDICTED: similar to calcium-regulated heat-stable protein (24kD) [Canis familiaris] Length = 224 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 139 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMC 189 >gi|242000494|ref|XP_002434890.1| PIN domain-containing RNA-binding protein, putative [Ixodes scapularis] gi|215498220|gb|EEC07714.1| PIN domain-containing RNA-binding protein, putative [Ixodes scapularis] Length = 315 Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57 G++KW+N GYGFI + E D+F+H++A+ + ++ EG+ V +D V Sbjct: 19 GTVKWFNVKNGYGFINRNDTRE---DIFVHQTAITRNNPQKIMRSVGEGETVEFDVV 72 >gi|107101389|ref|ZP_01365307.1| hypothetical protein PaerPA_01002426 [Pseudomonas aeruginosa PACS2] Length = 227 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 +WY+ DKG+GFI P+ G++VFLH SA G +G V + DA G+ A Sbjct: 9 RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 61 Query: 68 ENLKL 72 E +L Sbjct: 62 ERARL 66 >gi|194336044|ref|YP_002017838.1| cold-shock DNA-binding domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308521|gb|ACF43221.1| cold-shock DNA-binding domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 84 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%) Query: 7 IKWYNPDKGYGF-ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KGYGF + P+G G+D+F+H SA+ S F + Q D+ + Sbjct: 6 VKWFDGKKGYGFLLNPDG----GEDIFVHFSAIQSEQSFKVL-NQDAEVDFELDKTQKGL 60 Query: 66 SAENLKLV 73 A+N++ V Sbjct: 61 QAKNVREV 68 >gi|224095055|ref|XP_002197370.1| PREDICTED: similar to cold shock domain containing C2, RNA binding [Taeniopygia guttata] Length = 161 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 + +G K ++ +G+GFITPE TE D+F+H S + G + EG VTY Sbjct: 76 IFKGVCKQFSRSQGHGFITPENGTE---DIFVHVSDI--EGEYVPVEGDEVTYKVCPIPP 130 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 131 KNQKFQAVEVVL 142 >gi|254488265|ref|ZP_05101470.1| cold shock protein [Roseobacter sp. GAI101] gi|214045134|gb|EEB85772.1| cold shock protein [Roseobacter sp. GAI101] Length = 182 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +KW++ KG+GF G + DD+FLH + +GL +L G+ + + + Sbjct: 103 IEPARVKWFDKSKGFGFANVFGRS---DDIFLHIEVLRQSGLSDLQPGEALALRVIMGE- 158 Query: 62 NGKYSAE 68 G +AE Sbjct: 159 RGHMAAE 165 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 V G +KW++P KG+GF+ S E G D+ LH + + + G ++ +G Sbjct: 10 VTTGLVKWFDPAKGFGFVV---SDEGGPDILLHVNVLRNYGQSSVADG 54 >gi|297626985|ref|YP_003688748.1| Cold shock protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922750|emb|CBL57328.1| Cold shock protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 128 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +++++PDKG+GFIT + GD R+ V G+ ++ GQ V + V Sbjct: 4 GRVRFFDPDKGFGFIT----KDEGDGEVYFRANVLPDGVTSVKRGQRVEFGIV 52 >gi|56755411|gb|AAW25885.1| SJCHGC05173 protein [Schistosoma japonicum] gi|226470954|emb|CAX76910.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470956|emb|CAX76911.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470958|emb|CAX76912.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470960|emb|CAX76913.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470962|emb|CAX76914.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470964|emb|CAX76915.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470966|emb|CAX76916.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470968|emb|CAX76917.1| putative DNA-binding protein [Schistosoma japonicum] gi|226473230|emb|CAX71301.1| putative DNA-binding protein [Schistosoma japonicum] gi|226473232|emb|CAX71302.1| putative DNA-binding protein [Schistosoma japonicum] gi|226473234|emb|CAX71303.1| putative DNA-binding protein [Schistosoma japonicum] gi|226473236|emb|CAX71304.1| putative DNA-binding protein [Schistosoma japonicum] gi|226473238|emb|CAX71305.1| putative DNA-binding protein [Schistosoma japonicum] Length = 175 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 3/36 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39 RG +KW+N GYGFIT +++ D+F+H++A++ Sbjct: 19 RGVVKWFNVKAGYGFIT---RSDTSSDIFVHQTAIS 51 >gi|311251533|ref|XP_003124655.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 1 [Sus scrofa] gi|311251535|ref|XP_003124658.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 4 [Sus scrofa] gi|311251537|ref|XP_003124656.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 2 [Sus scrofa] Length = 146 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 61 IYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTY 108 >gi|260428547|ref|ZP_05782526.1| cold shock DNA-binding domain protein [Citreicella sp. SE45] gi|260423039|gb|EEX16290.1| cold shock DNA-binding domain protein [Citreicella sp. SE45] Length = 180 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW++P KG+GF+ + E G D+ LH + + + G ++ +G + + D Sbjct: 17 GKVKWFDPVKGFGFVV---ADEGGPDILLHANVLRNFGQSSVADGARIEVAVQRTD 69 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +KW++ KG+GF G + DDVF+H + +GL +L G+ + + Sbjct: 112 VKWFDKAKGFGFANVFGRS---DDVFIHIEVLRRSGLADLQPGEALAIRLI 159 >gi|268574654|ref|XP_002642306.1| C. briggsae CBR-CEY-4 protein [Caenorhabditis briggsae] gi|187025308|emb|CAP35775.1| CBR-CEY-4 protein [Caenorhabditis briggsae AF16] Length = 286 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KW++ YGF+ E + + +D F+H++A++ + L L E + V +D V+ Sbjct: 90 KGYVKWFSVRGRYGFVAREKAADETEDFFVHQTAISKSSTIKYYLRTLEEDEPVVFDIVE 149 >gi|149203726|ref|ZP_01880695.1| cold shock DNA-binding domain protein [Roseovarius sp. TM1035] gi|149142843|gb|EDM30885.1| cold shock DNA-binding domain protein [Roseovarius sp. TM1035] Length = 177 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KG+GF+ + E G D+ LH + + + G ++ + V D VQ G Sbjct: 12 KGRVKWFDPVKGFGFVI---ADEGGPDILLHPNVLRNFGQSSVADRAGVELD-VQQTERG 67 Query: 64 KYSA 67 + + Sbjct: 68 RQAV 71 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G E DVF+H + +GL ++ G+ + V + G+ + Sbjct: 108 VKWFDKGKGFGFANTFGRDE---DVFVHIEVLRRSGLADVQPGEALAI-RVIDGKRGRMA 163 Query: 67 AE 68 E Sbjct: 164 TE 165 >gi|332293257|ref|YP_004431866.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171343|gb|AEE20598.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 63 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFIT EG + D F+H S + + EG V +D + N Sbjct: 3 KGTVKFFNDTKGFGFITEEGVEK---DHFVHISGLIDE----IREGDEVEFDL--KEGNK 53 Query: 64 KYSAENLKLV 73 +A N++++ Sbjct: 54 GLNAVNVRVI 63 >gi|226475488|emb|CAX77797.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 214 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|224282740|ref|ZP_03646062.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171] gi|310287199|ref|YP_003938457.1| Cold shock protein [Bifidobacterium bifidum S17] gi|311064061|ref|YP_003970786.1| cold shock protein CspB [Bifidobacterium bifidum PRL2010] gi|313139899|ref|ZP_07802092.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171] gi|309251135|gb|ADO52883.1| Cold shock protein [Bifidobacterium bifidum S17] gi|310866380|gb|ADP35749.1| CspB Cold shock protein [Bifidobacterium bifidum PRL2010] gi|313132409|gb|EFR50026.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171] Length = 129 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G ++W++ KG+GFIT + G+DVFL +A+ G+ L +G V + + Sbjct: 4 GRVRWFDAKKGFGFIT----NDEGEDVFLPAAALPD-GVTTLRKGARVEFSVI 51 >gi|126334673|ref|XP_001367062.1| PREDICTED: similar to Calcium regulated heat stable protein 1, 24kDa [Monodelphis domestica] Length = 147 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 62 IYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPMEGDEVTYKMC 112 >gi|149278548|ref|ZP_01884684.1| cold shock protein [Pedobacter sp. BAL39] gi|149230543|gb|EDM35926.1| cold shock protein [Pedobacter sp. BAL39] Length = 63 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 9/58 (15%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++K++N KG+GFI P +GD ++F+H S + N+ E V+YD Q Sbjct: 1 MQQGTVKFFNETKGFGFIVP----ANGDSEIFVHSSGLMD----NIRENDSVSYDVEQ 50 >gi|213983151|ref|NP_001135490.1| lin-28 homolog B [Xenopus (Silurana) tropicalis] gi|195539937|gb|AAI67886.1| Unknown (protein for MGC:135309) [Xenopus (Silurana) tropicalis] Length = 253 Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS E+ DVF+H+S + G +L EG+ V + + Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTF 90 >gi|94732354|emb|CAK04626.1| novel protein (zgc:55584) [Danio rerio] Length = 179 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEG-STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ EG +S DVF+H+S + G +L EG+ V + + Sbjct: 30 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 85 >gi|260061051|ref|YP_003194131.1| cold shock protein [Robiginitalea biformata HTCC2501] gi|88785183|gb|EAR16352.1| cold shock protein [Robiginitalea biformata HTCC2501] Length = 64 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 6/50 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++K++N KGYGFIT + ++G D+F+H A A GL L +G V Y Sbjct: 3 GTVKFFNESKGYGFITND---DTGRDIFVH--ATALDGLV-LNQGDKVEY 46 >gi|54024961|ref|YP_119203.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54016469|dbj|BAD57839.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 122 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++ W++ +KG+GFITP+ + + VF+ A+ + G L G V Y + A Sbjct: 54 GTVAWFDAEKGFGFITPDDRSPA---VFVEFHAIEAVGYRTLVAGGPVVYRAEETKA 107 >gi|225719590|gb|ACO15641.1| Cold shock domain-containing protein C2 [Caligus clemensi] Length = 171 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 23/37 (62%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 +H G++K++ +G+GFITP S + F+H S + Sbjct: 67 IHEGTVKYFCRSRGFGFITPNKSVNDNQEFFMHISDI 103 >gi|226475498|emb|CAX77802.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 217 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|110667350|ref|YP_657161.1| cold shock protein [Haloquadratum walsbyi DSM 16790] gi|109625097|emb|CAJ51516.1| probable cold shock protein [Haloquadratum walsbyi DSM 16790] Length = 98 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++ ++N GYGFI+ E + E DVF H + +L EGQ + ++ VQ D Sbjct: 37 QGTVDFFNDTGGYGFISTEDADE---DVFFHMEDIGGP---DLEEGQDLEFEIVQAD 87 >gi|21673445|ref|NP_661510.1| cold shock-like protein CspG [Chlorobium tepidum TLS] gi|21646547|gb|AAM71852.1| cold shock-like protein CspG [Chlorobium tepidum TLS] Length = 97 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 6/54 (11%) Query: 4 RGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYD 55 + +KW++ KGYGFI P+G G+D+F+H S++ S F L + V YD Sbjct: 3 KSKVKWFDGKKGYGFILNPDG----GEDIFVHFSSIISDQSFKVLNQDADVEYD 52 >gi|284035600|ref|YP_003385530.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74] gi|283814893|gb|ADB36731.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74] Length = 63 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 + G++K++N KG+GFI P+ + G+D+F+H S + Sbjct: 1 MQTGTVKFFNETKGFGFIKPD---DGGEDIFVHASGL 34 >gi|91218197|ref|ZP_01255145.1| cold shock protein [Psychroflexus torquis ATCC 700755] gi|91183655|gb|EAS70050.1| cold shock protein [Psychroflexus torquis ATCC 700755] Length = 63 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFIT EG + D F+H S + + EG V +D + Sbjct: 1 MNKGTVKFFNDTKGFGFITEEGVDK---DHFVHASGLIDE----IREGDEVEFDL--QEG 51 Query: 62 NGKYSAENLKLV 73 N +A N++++ Sbjct: 52 NKGLNAVNVRVL 63 >gi|83594791|ref|YP_428543.1| cold-shock DNA-binding protein family protein [Rhodospirillum rubrum ATCC 11170] gi|83577705|gb|ABC24256.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC 11170] Length = 210 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++KW+N KG+GF+ ++ D FLH S + AG L EG + D Sbjct: 8 TVKWFNATKGFGFVR---VSDGEPDAFLHISVLQRAGYSELPEGATIVCD 54 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G +K+++ DKG+GF+ P+G G DV++ + G+ L +GQ V Sbjct: 147 GVVKFFSADKGFGFVVPDG---GGKDVYVGSRTLQDCGVSVLEQGQRV 191 >gi|86141013|ref|ZP_01059572.1| cold shock protein [Leeuwenhoekiella blandensis MED217] gi|85832955|gb|EAQ51404.1| cold shock protein [Leeuwenhoekiella blandensis MED217] Length = 63 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 6/51 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +G++K++N KGYGFIT + ++G D+F+H + + L EG V Y Sbjct: 2 KGTVKFFNESKGYGFITND---DTGKDIFVHATGLNGE---VLEEGDQVEY 46 >gi|256089138|ref|XP_002580673.1| Y box binding protein [Schistosoma mansoni] gi|238666272|emb|CAZ36912.1| Y box binding protein, putative [Schistosoma mansoni] Length = 231 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFIN---RQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|289581257|ref|YP_003479723.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] gi|289530810|gb|ADD05161.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] Length = 64 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++ ++N GYGFI E + E DVF H V +L EGQ + +D Q D Sbjct: 3 KGTVAFFNDTGGYGFIETEDADE---DVFFHMEDVGGP---DLEEGQELEFDIEQAD 53 >gi|256089136|ref|XP_002580672.1| Y box binding protein [Schistosoma mansoni] gi|1477478|gb|AAC47760.1| Y-box binding protein [Schistosoma mansoni] gi|1477484|gb|AAC47761.1| Y-box binding protein homolog [Schistosoma mansoni] gi|238666271|emb|CAZ36911.1| Y box binding protein, putative [Schistosoma mansoni] Length = 217 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFIN---RQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|226475490|emb|CAX77798.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 217 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|226475506|emb|CAX77806.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 217 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|226474418|emb|CAX71695.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 217 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|226474412|emb|CAX71692.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226474414|emb|CAX71693.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226474416|emb|CAX71694.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226474420|emb|CAX71696.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226474426|emb|CAX71699.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226475492|emb|CAX77799.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226475494|emb|CAX77800.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226475496|emb|CAX77801.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226475500|emb|CAX77803.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226475508|emb|CAX77807.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226475510|emb|CAX77808.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 217 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|14150689|gb|AAK54601.1|AF373220_1 Y-box DNA-binding protein [Schistosoma japonicum] gi|14039811|gb|AAK53394.1| Y-box binding protein [Schistosoma japonicum] Length = 202 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|114570048|ref|YP_756728.1| cold-shock DNA-binding protein family protein [Maricaulis maris MCS10] gi|114340510|gb|ABI65790.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10] Length = 174 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+P +GYGFI +++ D+ LH S + G + VQ D G+ Sbjct: 18 GRVKWYDPARGYGFID---ASDGEGDILLHASCLRRFGQGPALPNAKIVCKAVQGD-KGR 73 Query: 65 YSAENLKL 72 + E +++ Sbjct: 74 QAVELVEM 81 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ +GYGF+T + DVFLH + + AG ++ G + V+ G + Sbjct: 110 VKWFDALRGYGFVTCDNVE---GDVFLHAATLRRAGFEDIQPGDRIEVRCVEG-PKGALA 165 Query: 67 AE 68 AE Sbjct: 166 AE 167 >gi|82654186|ref|NP_001026944.2| protein lin-28 homolog A [Gallus gallus] gi|116248185|sp|Q45KJ5|LN28A_CHICK RecName: Full=Protein lin-28 homolog A; Short=Lin-28A gi|82622705|gb|AAZ38895.2| LIN28A [Gallus gallus] Length = 202 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFI--TPEGST--ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF+ T +G +S DVF+H+S + G +L EG+ V + + Sbjct: 36 GICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 91 >gi|226475502|emb|CAX77804.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 217 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFINRQDTST---DIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|6114756|emb|CAA62001.2| PIPPin protein [Rattus norvegicus] Length = 227 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 142 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 196 Query: 61 ANGKYSAENLKLV 73 N K+ A + L Sbjct: 197 KNQKFQAVEVVLT 209 >gi|154147690|ref|NP_001093718.1| cold shock domain containing C2, RNA binding [Xenopus (Silurana) tropicalis] gi|134025813|gb|AAI35982.1| csdc2 protein [Xenopus (Silurana) tropicalis] Length = 151 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 +++G K ++ +G+GFITPE TE D+F+H S + G + EG VT+ Sbjct: 66 IYKGVCKQFSRSQGHGFITPENGTE---DIFVHISDI--EGEYVPVEGDEVTFKMCPIPP 120 Query: 61 ANGKYSAENLKLV 73 N K+ A + L Sbjct: 121 KNQKFQAVEVILT 133 >gi|311251531|ref|XP_003124657.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 3 [Sus scrofa] Length = 183 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 98 IYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDV--EGEYVPVEGDEVTYKMC 148 >gi|326936337|ref|XP_003214212.1| PREDICTED: protein lin-28 homolog A-like, partial [Meleagris gallopavo] Length = 191 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFI--TPEG--STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GF+ T +G + +S DVF+H+S + G +L EG+ V + + ++ Sbjct: 25 GICKWFNVRMGFGFLSMTAKGGATLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKS 83 >gi|226475504|emb|CAX77805.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 203 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFIN---RQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|226474424|emb|CAX71698.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 203 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFIN---RQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|169235137|ref|YP_001688337.1| cold shock protein [Halobacterium salinarum R1] gi|167726203|emb|CAP12980.1| putative cold shock protein [Halobacterium salinarum R1] Length = 64 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G + ++N GYGFI E + E DVF H V +L EGQ V +D Q D Sbjct: 4 GEVDFFNDTGGYGFIETEDADE---DVFFHMEDVGGP---DLEEGQEVEFDIEQAD 53 >gi|300022575|ref|YP_003755186.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524396|gb|ADJ22865.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 199 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 R +KW+N +G+GF+T E D+F H + G L GQ+V + Sbjct: 124 ERAYVKWFNRVRGFGFLT---RGEGTPDIFCHMETLRRFGFTELRPGQIVQVRW 174 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G IKW++ KG+GFI P+ D+ LH + + + G EG V + ++ Sbjct: 35 GMIKWFDASKGFGFIVPDNGLP---DILLHVTCLRAGGFQTAYEGARVHCEVLRR 86 >gi|297261183|ref|XP_001100705.2| PREDICTED: cold shock domain-containing protein C2-like [Macaca mulatta] Length = 116 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 31 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 85 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 86 KNQKFQAVEVVL 97 >gi|299133814|ref|ZP_07027008.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] gi|298591650|gb|EFI51851.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] Length = 240 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + R +KW+N +G+GF++ E D+F+H + G+ L GQ V Y Sbjct: 165 LERAQVKWFNRLRGFGFVS---CGEGTPDIFVHMETLRRYGMTELRPGQFVLVRY 216 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G IKW++ KGYGFI P+ D+ LH + + G EG + + VQ Sbjct: 76 GVIKWFDASKGYGFIVPDNGWP---DILLHVTVLRRDGFQTAYEGARLVCECVQ 126 >gi|320094620|ref|ZP_08026384.1| cold-shock domain family protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319978456|gb|EFW10035.1| cold-shock domain family protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 125 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 4/38 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42 G +++++P++G+GFIT + G VFLH SA+ + G Sbjct: 4 GRVRFFDPERGFGFIT----GDDGSQVFLHSSALPAGG 37 >gi|292654672|ref|YP_003534569.1| cold shock protein [Haloferax volcanii DS2] gi|291371643|gb|ADE03870.1| cold shock protein [Haloferax volcanii DS2] Length = 64 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 6/55 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G + ++N GYGFI+ + ++ DDVF H V +L EGQ V +D Q Sbjct: 3 KGKVDFFNDTGGYGFIS---TDDADDDVFFHMEDVGGP---DLEEGQEVEFDIEQ 51 >gi|255018523|ref|ZP_05290649.1| major cold-shock protein [Listeria monocytogenes FSL F2-515] Length = 27 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 4/31 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVF 32 + G++KW+N +KG+GFI EG GDDVF Sbjct: 1 MQTGTVKWFNSEKGFGFIEVEG----GDDVF 27 >gi|15789425|ref|NP_279249.1| cold shock protein [Halobacterium sp. NRC-1] gi|10579749|gb|AAG18729.1| cold shock protein [Halobacterium sp. NRC-1] Length = 74 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G + ++N GYGFI E + E DVF H V +L EGQ V +D Q D Sbjct: 14 GEVDFFNDTGGYGFIETEDADE---DVFFHMEDVGGP---DLEEGQEVEFDIEQAD 63 >gi|124006449|ref|ZP_01691282.1| cold shock protein, putative DNA-binding protein [Microscilla marina ATCC 23134] gi|123987862|gb|EAY27542.1| cold shock protein, putative DNA-binding protein [Microscilla marina ATCC 23134] Length = 150 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 7/56 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 V +G + ++N DKGYGFI +++ + +F+H + V L ++ E +VTY+ V Sbjct: 87 VRKGIVTYFNDDKGYGFIK---DSKTKEKIFVHINNV----LEDIKENNVVTYEVV 135 >gi|114573575|ref|XP_001138838.1| PREDICTED: similar to transcription factor EF1(A) [Pan troglodytes] Length = 324 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ + + V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKKNPRKYLRSVGDRETVEFDVVEGE 117 >gi|332292095|ref|YP_004430704.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170181|gb|AEE19436.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 63 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KGYGFIT + ++G D+F+H + + + EG V +YV+ + Sbjct: 2 EGTVKFFNESKGYGFITND---DTGKDIFVHVTGLNGE---TINEGDKV--EYVEEEGRK 53 Query: 64 KYSAENLKLV 73 +A ++++ Sbjct: 54 GLTAAQVRVL 63 >gi|149250840|ref|XP_001474936.1| PREDICTED: calcium-regulated heat stable protein 1-like [Mus musculus] Length = 148 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V++G K + KG+GFITP + G D+FLH S V G + EG VTY Sbjct: 63 VYKGVCKCFCRSKGHGFITP---GDGGPDIFLHISDV--EGEYVPVEGDEVTY 110 >gi|301347534|ref|ZP_07228275.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB056] Length = 60 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 N KG+GFI T+ G DVF H S + + G L EGQ V + Q Sbjct: 1 NETKGFGFI----QTDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQ 44 >gi|82802829|gb|ABB92460.1| rcNSEP1 [Homo sapiens] Length = 319 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 7/64 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H +A L ++ +G+ V +D V+ + Sbjct: 57 GTVKWFNVRNGYGFIH---RNDTKEDVFVHHTAXKKNNPRKYLRSVGDGEXVEFDVVEGE 113 Query: 61 ANGK 64 K Sbjct: 114 KGAK 117 >gi|259479879|tpe|CBF70506.1| TPA: cold shock NA binding domain protein (JCVI) [Aspergillus nidulans FGSC A4] Length = 111 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KWYN +G+GFIT ++ G ++ L R ++ + L EG V+Y+ V Sbjct: 49 GTVKWYNDAQGFGFIT----SDFGGELILRRQSI-TEHTQRLKEGMKVSYEAV 96 >gi|148284974|ref|YP_001249064.1| cold shock-like protein [Orientia tsutsugamushi str. Boryong] gi|189184097|ref|YP_001937882.1| cold shock protein [Orientia tsutsugamushi str. Ikeda] gi|146740413|emb|CAM80883.1| Cold shock-like protein [Orientia tsutsugamushi str. Boryong] gi|189180868|dbj|BAG40648.1| cold shock protein [Orientia tsutsugamushi str. Ikeda] Length = 73 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG---DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KWYN KGYGFI P + G +DVF+H +AV +AG+ +L EGQ V++ Sbjct: 4 GIVKWYNSVKGYGFIQPSEKVKDGGKMEDVFVHATAVVAAGVADLKEGQRVSFQI--GSQ 61 Query: 62 NGKYSAENLKL 72 G+ A NL L Sbjct: 62 KGRIYATNLVL 72 >gi|118344436|ref|NP_001072039.1| Y-box protein 1/2/3 [Ciona intestinalis] gi|70571495|dbj|BAE06760.1| Y-box protein 1/2/3 [Ciona intestinalis] Length = 273 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G +KW+N GYGF+ + + E DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 28 GVVKWFNVRNGYGFVNRDDNKE---DVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVE 82 >gi|332638444|ref|ZP_08417307.1| Cold-shock protein [Weissella cibaria KACC 11862] Length = 73 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K +N D G+GFI +G +DVF+H SA+ + + +L G+ V VQ + Sbjct: 6 GYVKTWNADNGFGFIELKGE----EDVFVHFSAIETPRVRDLEVGEPVKLVVVQGVRGPQ 61 Query: 65 YSAENLKL 72 +A +K+ Sbjct: 62 AAAVEVKV 69 >gi|197294834|ref|YP_001799375.1| cold shock protein [Candidatus Phytoplasma australiense] gi|171854161|emb|CAM12154.1| Cold shock protein, similar to Csp of Bacteriophage bIL312 [Candidatus Phytoplasma australiense] Length = 77 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 4/38 (10%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40 +G+ +W++ DKGYGFI + G DVF+H S++ + Sbjct: 6 QQGTCRWFSGDKGYGFIV----SAEGKDVFVHYSSIQT 39 >gi|39939157|ref|NP_950923.1| cold shock protein [Onion yellows phytoplasma OY-M] gi|39722266|dbj|BAD04756.1| cold shock protein [Onion yellows phytoplasma OY-M] Length = 74 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 4/38 (10%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40 +G+ +W++ DKGYGFI + G D+F+H S++ + Sbjct: 6 QQGTCRWFSKDKGYGFIV----SVDGKDIFVHYSSIQT 39 >gi|328957375|ref|YP_004374761.1| cold shock protein CspB [Carnobacterium sp. 17-4] gi|328673699|gb|AEB29745.1| cold shock protein CspB [Carnobacterium sp. 17-4] Length = 68 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 37/58 (63%), Gaps = 5/58 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58 + +G++KW++ +KGYGFI +D+F+H + + + F +L+ GQ V+++ ++ Sbjct: 1 MEQGTVKWFSNEKGYGFI----EYNETEDIFIHFTGIDNGEDFKSLSSGQHVSFEILE 54 >gi|323457293|gb|EGB13159.1| hypothetical protein AURANDRAFT_60508 [Aureococcus anophagefferens] Length = 670 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +IK + P+KG+GF T G + DVF HRS+V S + L G VT V D G+ Sbjct: 252 TIKSWRPEKGFGFCTVPGEAK---DVFFHRSSV-SGSVDALRAGAEVTVT-VGRDGRGRK 306 Query: 66 SAENLKL 72 +++ L Sbjct: 307 QCDSVAL 313 >gi|297709000|ref|XP_002831236.1| PREDICTED: cold shock domain-containing protein C2-like isoform 1 [Pongo abelii] Length = 222 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 137 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 191 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 192 KNQKFQAVEVVL 203 >gi|226474410|emb|CAX71691.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 203 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|55379016|ref|YP_136866.1| cold shock protein [Haloarcula marismortui ATCC 43049] gi|55231741|gb|AAV47160.1| cold shock protein [Haloarcula marismortui ATCC 43049] Length = 64 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G++ ++N GYGFI E + E DVF H + +L EGQ + +D Q D Sbjct: 3 KGTVDFFNDTGGYGFIDTEDADE---DVFFHMEDIGGP---DLEEGQELEFDIEQAD 53 >gi|85057350|ref|YP_456266.1| cold shock protein [Aster yellows witches'-broom phytoplasma AYWB] gi|84789455|gb|ABC65187.1| cold shock protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 74 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60 +G+ +W++ DKGYGFI + G D+F+H S++ + G L E V + + D Sbjct: 6 EQGTCRWFSKDKGYGFII----SADGKDIFVHYSSIQTEVFGRKTLNENDKVEFTVKEGD 61 >gi|116621692|ref|YP_823848.1| cold-shock DNA-binding protein family protein [Candidatus Solibacter usitatus Ellin6076] gi|116224854|gb|ABJ83563.1| cold-shock DNA-binding protein family [Candidatus Solibacter usitatus Ellin6076] Length = 144 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+ Y KG+GF+ P+ + G D+F H S ++ +L G V Y+ + D GK Sbjct: 71 GSVVTYFEAKGFGFLRPD---DGGRDIFFHVSRLSEGLATDLRPGTRVLYE-LGMDRTGK 126 Query: 65 YSAENLKL 72 +A +L++ Sbjct: 127 MAASSLRI 134 >gi|313765415|gb|EFS36779.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL013PA1] gi|313772599|gb|EFS38565.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL074PA1] gi|313792938|gb|EFS41005.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL110PA1] gi|313806623|gb|EFS45130.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL087PA2] gi|313810820|gb|EFS48534.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL083PA1] gi|313814335|gb|EFS52049.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL025PA1] gi|313815182|gb|EFS52896.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL059PA1] gi|313817166|gb|EFS54880.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL046PA2] gi|313821769|gb|EFS59483.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL036PA1] gi|313824339|gb|EFS62053.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL036PA2] gi|313826698|gb|EFS64412.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL063PA1] gi|313828486|gb|EFS66200.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL063PA2] gi|313831939|gb|EFS69653.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL007PA1] gi|313834520|gb|EFS72234.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL056PA1] gi|313840249|gb|EFS77963.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL086PA1] gi|314915942|gb|EFS79773.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL005PA4] gi|314916971|gb|EFS80802.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL050PA1] gi|314921491|gb|EFS85322.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL050PA3] gi|314926877|gb|EFS90708.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL036PA3] gi|314931185|gb|EFS95016.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL067PA1] gi|314954756|gb|EFS99162.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL027PA1] gi|314958923|gb|EFT03025.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL002PA1] gi|314961218|gb|EFT05319.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL002PA2] gi|314964355|gb|EFT08455.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL082PA1] gi|314969454|gb|EFT13552.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL037PA1] gi|314974521|gb|EFT18616.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL053PA1] gi|314977286|gb|EFT21381.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL045PA1] gi|314980557|gb|EFT24651.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL072PA2] gi|314985613|gb|EFT29705.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL005PA1] gi|314987570|gb|EFT31661.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL005PA2] gi|314988965|gb|EFT33056.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL005PA3] gi|315078631|gb|EFT50662.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL053PA2] gi|315081909|gb|EFT53885.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL078PA1] gi|315082596|gb|EFT54572.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL027PA2] gi|315086307|gb|EFT58283.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL002PA3] gi|315087557|gb|EFT59533.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL072PA1] gi|315097592|gb|EFT69568.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL038PA1] gi|315099808|gb|EFT71784.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL059PA2] gi|315101884|gb|EFT73860.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL046PA1] gi|315106608|gb|EFT78584.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL030PA1] gi|315110397|gb|EFT82373.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL030PA2] gi|327331557|gb|EGE73296.1| cold-shock domain protein [Propionibacterium acnes HL096PA2] gi|327333540|gb|EGE75260.1| cold-shock domain protein [Propionibacterium acnes HL096PA3] gi|327445435|gb|EGE92089.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL013PA2] gi|327447049|gb|EGE93703.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL043PA1] gi|327449915|gb|EGE96569.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL043PA2] gi|327454759|gb|EGF01414.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL087PA3] gi|327455614|gb|EGF02269.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL083PA2] gi|327456893|gb|EGF03548.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL092PA1] gi|328755815|gb|EGF69431.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL087PA1] gi|328756595|gb|EGF70211.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL025PA2] gi|328758679|gb|EGF72295.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL020PA1] gi|328761686|gb|EGF75201.1| cold-shock domain protein [Propionibacterium acnes HL099PA1] Length = 135 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +++Y+ KG+GF+T +G G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 12 GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNTLKPGQKVDFGIVE 60 >gi|82242626|sp|Q8AVK2|LN28B_XENLA RecName: Full=Protein lin-28 homolog B; Short=Lin-28B gi|27503403|gb|AAH42225.1| LOC373796 protein [Xenopus laevis] Length = 252 Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS E+ DVF+H+S + G +L EG+ V + + Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDGFRSLKEGEPVEFTF 90 >gi|88803297|ref|ZP_01118823.1| cold shock protein [Polaribacter irgensii 23-P] gi|88780863|gb|EAR12042.1| cold shock protein [Polaribacter irgensii 23-P] Length = 63 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFIT EG+ E F+H S + + E V +D D Sbjct: 1 MNKGTVKFFNESKGFGFITEEGNNEEH---FVHVSGLVDE----IRENDEVEFDL--QDG 51 Query: 62 NGKYSAENLKLV 73 +A N++++ Sbjct: 52 RKGLNAVNVRVI 63 >gi|119580846|gb|EAW60442.1| cold shock domain containing C2, RNA binding [Homo sapiens] Length = 222 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 137 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 191 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 192 KNQKFQAVEVVL 203 >gi|226474422|emb|CAX71697.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 203 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI + ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFINRQ---DTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 D 60 D Sbjct: 84 D 84 >gi|118344374|ref|NP_001072010.1| Y-box protein 1/2/3 [Ciona intestinalis] gi|70571490|dbj|BAE06759.1| Y-box protein 1/2/3 [Ciona intestinalis] Length = 320 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 G +KW+N GYGF+ + + E DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 28 GVVKWFNVRNGYGFVNRDDNKE---DVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVE 82 >gi|83749695|ref|ZP_00946674.1| Cold shock protein [Ralstonia solanacearum UW551] gi|83723620|gb|EAP70819.1| Cold shock protein [Ralstonia solanacearum UW551] Length = 82 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 3/28 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVF 32 G++KW+N KG+GFITP+G G D+F Sbjct: 46 GTVKWFNETKGFGFITPDG---GGADLF 70 >gi|313802611|gb|EFS43833.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL110PA2] Length = 135 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +++Y+ KG+GF+T +G G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 12 GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNTLKPGQKVDFGIVE 60 >gi|300709511|ref|YP_003735325.1| cold shock protein [Halalkalicoccus jeotgali B3] gi|299123194|gb|ADJ13533.1| cold shock protein [Halalkalicoccus jeotgali B3] Length = 64 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G + ++N GYGFI+ + ++ DDVF H V +L EGQ + +D Q Sbjct: 3 KGEVDFFNDTGGYGFIS---TDDADDDVFFHMEDVGGP---DLEEGQEIEFDIEQ 51 >gi|167045315|gb|ABZ09973.1| putative cold-shock DNA-binding domain protein [uncultured marine crenarchaeote HF4000_APKG9P22] Length = 64 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++KW+N KG+GFI EG + D+F+H++ + Sbjct: 4 GTVKWFNQSKGFGFIEREGEAK---DLFVHQTEL 34 >gi|148725317|emb|CAN88784.1| novel protein (zgc:55584) [Danio rerio] Length = 102 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEG-STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ EG +S DVF+H+S + G +L EG+ V + + Sbjct: 41 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 96 >gi|121934029|gb|AAI27713.1| LIN28B protein [Homo sapiens] gi|121934102|gb|AAI27714.1| LIN28B protein [Homo sapiens] gi|146424334|gb|AAI41961.1| LIN28B protein [Homo sapiens] gi|152061020|gb|AAI50539.1| LIN28B protein [Homo sapiens] gi|152061071|gb|AAI50538.1| LIN28B protein [Homo sapiens] Length = 227 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 9 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 64 >gi|41055233|ref|NP_957385.1| protein lin-28 homolog A [Danio rerio] gi|82241857|sp|Q803L0|LN28A_DANRE RecName: Full=Protein lin-28 homolog A; Short=Lin-28A gi|27882510|gb|AAH44433.1| Lin-28 homolog (C. elegans) [Danio rerio] gi|94732353|emb|CAK04625.1| novel protein (zgc:55584) [Danio rerio] Length = 202 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEG-STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ EG +S DVF+H+S + G +L EG+ V + + Sbjct: 36 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 91 >gi|12082718|gb|AAG48580.1| cold shock-like protein CspE [Brucella abortus] Length = 121 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KGYGFI P+ + D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPDQPGLT--DILLHVTSLRRDGFQTALEGARIVCEVRHGD 81 >gi|91794216|ref|YP_563867.1| hypothetical protein Sden_2865 [Shewanella denitrificans OS217] gi|91716218|gb|ABE56144.1| protein of unknown function DUF1294 [Shewanella denitrificans OS217] Length = 196 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G + ++ DKG+GFI P +G +VFLH SA+ +A E ++TY V D Sbjct: 1 MRVKGKLVRWDDDKGFGFIRPN---LTGPEVFLHISALRNASR-RPQEDDVITYALVA-D 55 Query: 61 ANGKYSAENLKL 72 G+ +A N L Sbjct: 56 KQGRPTAANATL 67 >gi|23464629|ref|NP_695232.1| cold shock protein [Bifidobacterium longum NCC2705] gi|189438864|ref|YP_001953945.1| cold shock protein [Bifidobacterium longum DJO10A] gi|213691589|ref|YP_002322175.1| putative cold-shock DNA-binding domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227546726|ref|ZP_03976775.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620702|ref|ZP_04663733.1| CspA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454610|ref|YP_003661753.1| putative cold-shock DNA-binding domain-containing protein [Bifidobacterium longum subsp. longum JDM301] gi|317481715|ref|ZP_07940747.1| cold-shock' DNA-binding domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689677|ref|YP_004209411.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F] gi|322691638|ref|YP_004221208.1| cold shock protein [Bifidobacterium longum subsp. longum JCM 1217] gi|23325186|gb|AAN23868.1| cold shock protein [Bifidobacterium longum NCC2705] gi|189427299|gb|ACD97447.1| Cold shock protein [Bifidobacterium longum DJO10A] gi|213523050|gb|ACJ51797.1| putative cold-shock DNA-binding domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227212688|gb|EEI80569.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516278|gb|EEQ56145.1| CspA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296184041|gb|ADH00923.1| putative cold-shock DNA-binding domain protein [Bifidobacterium longum subsp. longum JDM301] gi|316916829|gb|EFV38219.1| cold-shock' DNA-binding domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456494|dbj|BAJ67116.1| cold shock protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320457677|dbj|BAJ68298.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320461013|dbj|BAJ71633.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F] Length = 79 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 7/55 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTY 54 +G++K++ KG+GFI P+ + G+DVF+H + + G N L EG V Y Sbjct: 3 QGTVKFFLAKKGFGFIQPD---DGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEY 54 >gi|39935591|ref|NP_947867.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris CGA009] gi|39649444|emb|CAE27966.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009] Length = 235 Score = 37.4 bits (85), Expect = 0.77, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G IKW++ KGYGF+ P+ DV LH + + G EG + + VQ Sbjct: 71 GVIKWFDASKGYGFVVPDNGWP---DVLLHVTVLRRDGYQTAYEGARIVVECVQ 121 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V Sbjct: 160 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYV 207 >gi|3121922|sp|Q44317|CSPA_AERSA RecName: Full=Major cold-shock protein gi|1402733|gb|AAC80231.1| major cold-shock protein [Aeromonas salmonicida] Length = 46 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KG+GFI+P + DVF+H SA+ S L EGQ V + Q Sbjct: 1 EKGFGFISP---ADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQ 43 >gi|327335065|gb|EGE76776.1| cold-shock domain protein [Propionibacterium acnes HL097PA1] Length = 135 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +++Y+ KG+GF+T +G G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 12 GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNTLKPGQKVDFGIVE 60 >gi|240849145|ref|NP_001155549.1| Y-box protein Ct-p40-like [Acyrthosiphon pisum] gi|239788387|dbj|BAH70879.1| ACYPI003867 [Acyrthosiphon pisum] Length = 305 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G +KW+N GYGFI ++ +D+F+H+SA+ + ++ +G+ V +D V+ + Sbjct: 30 GVVKWFNVKSGYGFIN---RNDTKEDIFVHQSAIIKNNPKKIVRSVGDGETVEFDVVEGE 86 >gi|50841960|ref|YP_055187.1| cold shock protein [Propionibacterium acnes KPA171202] gi|289424366|ref|ZP_06426149.1| cold-shock DNA-binding domain protein [Propionibacterium acnes SK187] gi|289428406|ref|ZP_06430092.1| cold-shock DNA-binding domain protein [Propionibacterium acnes J165] gi|295130039|ref|YP_003580702.1| cold-shock DNA-binding domain protein [Propionibacterium acnes SK137] gi|50839562|gb|AAT82229.1| cold shock protein [Propionibacterium acnes KPA171202] gi|289155063|gb|EFD03745.1| cold-shock DNA-binding domain protein [Propionibacterium acnes SK187] gi|289158378|gb|EFD06595.1| cold-shock DNA-binding domain protein [Propionibacterium acnes J165] gi|291375123|gb|ADD98977.1| cold-shock DNA-binding domain protein [Propionibacterium acnes SK137] gi|332674879|gb|AEE71695.1| cold shock protein [Propionibacterium acnes 266] Length = 127 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +++Y+ KG+GF+T +G G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 4 GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNTLKPGQKVDFGIVE 52 >gi|192291180|ref|YP_001991785.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] gi|192284929|gb|ACF01310.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] Length = 235 Score = 37.4 bits (85), Expect = 0.78, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G IKW++ KGYGF+ P+ DV LH + + G EG + + VQ Sbjct: 71 GVIKWFDASKGYGFVVPDNGWP---DVLLHVTVLRRDGYQTAYEGARIVVECVQ 121 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V Sbjct: 160 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYV 207 >gi|149279957|ref|ZP_01886083.1| cold shock protein [Pedobacter sp. BAL39] gi|149229337|gb|EDM34730.1| cold shock protein [Pedobacter sp. BAL39] Length = 63 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 9/58 (15%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++K++N KG+GFI P +GD ++F+H S + L ++ E VTYD Q Sbjct: 1 MQEGTVKFFNETKGFGFIVP----ANGDSEIFVHSSGL----LDSIRENDSVTYDVEQ 50 >gi|88855706|ref|ZP_01130369.1| cold shock protein [marine actinobacterium PHSC20C1] gi|88815030|gb|EAR24889.1| cold shock protein [marine actinobacterium PHSC20C1] Length = 127 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 9/66 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K+Y+ +KG+GFI ++ G +VFLH SA+ AG + G + + A+GK Sbjct: 4 GKVKFYDDEKGFGFIM----SDEGQEVFLHASAL-PAGTTGVKAGTRLEFGI----ADGK 54 Query: 65 YSAENL 70 A+ L Sbjct: 55 KGAQAL 60 >gi|282853550|ref|ZP_06262887.1| cold-shock DNA-binding domain protein [Propionibacterium acnes J139] gi|282583003|gb|EFB88383.1| cold-shock DNA-binding domain protein [Propionibacterium acnes J139] gi|314922101|gb|EFS85932.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL001PA1] gi|314965185|gb|EFT09284.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL082PA2] gi|315093944|gb|EFT65920.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL060PA1] gi|315104625|gb|EFT76601.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL050PA2] gi|327329475|gb|EGE71235.1| cold-shock domain protein [Propionibacterium acnes HL103PA1] Length = 127 Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +++Y+ KG+GF+T +G G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 4 GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNTLKPGQKVDFGIVE 52 >gi|149743340|ref|XP_001500375.1| PREDICTED: similar to RNA-binding protein pippin [Equus caballus] Length = 153 Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 68 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 122 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 123 KNQKFQAVEVVL 134 >gi|163786330|ref|ZP_02180778.1| cold shock protein [Flavobacteriales bacterium ALC-1] gi|159878190|gb|EDP72246.1| cold shock protein [Flavobacteriales bacterium ALC-1] Length = 84 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 9/69 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFIT EGS + D F+H S + + EG V +D + Sbjct: 25 GTVKFFNDSKGFGFITEEGSDK---DHFVHISGLVDE----IKEGDNVEFDLTEGKKG-- 75 Query: 65 YSAENLKLV 73 +A N+K++ Sbjct: 76 LNAVNVKVI 84 >gi|56462192|gb|AAV91379.1| hypothetical protein 18 [Lonomia obliqua] Length = 254 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57 G++KW+N GYGFI ++ +DVF+H++A+ + ++ +G++V + V Sbjct: 31 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEVVEFAVV 84 >gi|281485622|ref|NP_001164013.1| cold shock domain-containing protein C2 [Rattus norvegicus] gi|293348837|ref|XP_001077363.2| PREDICTED: cold shock domain containing C2, RNA binding [Rattus norvegicus] gi|293360735|ref|XP_345861.4| PREDICTED: cold shock domain-containing protein C2 [Rattus norvegicus] gi|32129826|sp|Q63430|CSDC2_RAT RecName: Full=Cold shock domain-containing protein C2; AltName: Full=RNA-binding protein PIPPin gi|149065816|gb|EDM15689.1| cold shock domain containing C2, RNA binding [Rattus norvegicus] Length = 154 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 69 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 123 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 124 KNQKFQAVEVVL 135 >gi|291410316|ref|XP_002721452.1| PREDICTED: cold shock domain containing C2, RNA binding-like [Oryctolagus cuniculus] Length = 200 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 115 VFKGICKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 169 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 170 KNQKFQAVEVVL 181 >gi|301787827|ref|XP_002929327.1| PREDICTED: cold shock domain-containing protein C2-like [Ailuropoda melanoleuca] gi|281340937|gb|EFB16521.1| hypothetical protein PANDA_019484 [Ailuropoda melanoleuca] Length = 153 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 68 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 122 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 123 KNQKFQAVEVVL 134 >gi|218892082|ref|YP_002440949.1| hypothetical protein PLES_33631 [Pseudomonas aeruginosa LESB58] gi|218772308|emb|CAW28090.1| hypothetical protein PLES_33631 [Pseudomonas aeruginosa LESB58] Length = 238 Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 +WY+ DKG+GFI P+ G++VFLH SA G +G V + DA G+ A Sbjct: 20 RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 72 Query: 68 ENLKL 72 E +L Sbjct: 73 ERARL 77 >gi|254240344|ref|ZP_04933666.1| hypothetical protein PA2G_00991 [Pseudomonas aeruginosa 2192] gi|126193722|gb|EAZ57785.1| hypothetical protein PA2G_00991 [Pseudomonas aeruginosa 2192] Length = 240 Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 +WY+ DKG+GFI P+ G++VFLH SA G +G V + DA G+ A Sbjct: 22 RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 74 Query: 68 ENLKL 72 E +L Sbjct: 75 ERARL 79 >gi|254235046|ref|ZP_04928369.1| hypothetical protein PACG_00926 [Pseudomonas aeruginosa C3719] gi|126166977|gb|EAZ52488.1| hypothetical protein PACG_00926 [Pseudomonas aeruginosa C3719] Length = 240 Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 +WY+ DKG+GFI P+ G++VFLH SA G +G V + DA G+ A Sbjct: 22 RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 74 Query: 68 ENLKL 72 E +L Sbjct: 75 ERARL 79 >gi|49082146|gb|AAT50473.1| PA1960 [synthetic construct] Length = 241 Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 +WY+ DKG+GFI P+ G++VFLH SA G +G V + DA G+ A Sbjct: 22 RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 74 Query: 68 ENLKL 72 E +L Sbjct: 75 ERARL 79 >gi|15597156|ref|NP_250650.1| hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1] gi|9947958|gb|AAG05348.1|AE004622_10 hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1] Length = 240 Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 +WY+ DKG+GFI P+ G++VFLH SA G +G V + DA G+ A Sbjct: 22 RWYD-DKGFGFILPK---TGGEEVFLHISAF--RGDRRPRQGDQVWF-LASQDAQGRLRA 74 Query: 68 ENLKL 72 E +L Sbjct: 75 ERARL 79 >gi|24307959|ref|NP_055275.1| cold shock domain-containing protein C2 [Homo sapiens] gi|297709002|ref|XP_002831237.1| PREDICTED: cold shock domain-containing protein C2-like isoform 2 [Pongo abelii] gi|32129852|sp|Q9Y534|CSDC2_HUMAN RecName: Full=Cold shock domain-containing protein C2; AltName: Full=RNA-binding protein PIPPin gi|5304854|emb|CAB46024.1| cold shock domain containing C2, RNA binding [Homo sapiens] gi|5931606|dbj|BAA84704.1| RNA-binding protein PIPPin [Homo sapiens] gi|45501284|gb|AAH67113.1| CSDC2 protein [Homo sapiens] gi|47678445|emb|CAG30343.1| dJ347H13.2 [Homo sapiens] gi|57997216|emb|CAD39079.2| hypothetical protein [Homo sapiens] gi|109451154|emb|CAK54438.1| CSDC2 [synthetic construct] gi|109451732|emb|CAK54737.1| CSDC2 [synthetic construct] gi|190689775|gb|ACE86662.1| cold shock domain containing C2, RNA binding protein [synthetic construct] gi|190691143|gb|ACE87346.1| cold shock domain containing C2, RNA binding protein [synthetic construct] gi|306921241|dbj|BAJ17700.1| cold shock domain containing C2, RNA binding [synthetic construct] Length = 153 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 68 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 122 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 123 KNQKFQAVEVVL 134 >gi|326332155|ref|ZP_08198437.1| cold-shock domain family protein [Nocardioidaceae bacterium Broad-1] gi|325950053|gb|EGD42111.1| cold-shock domain family protein [Nocardioidaceae bacterium Broad-1] Length = 132 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GF+ S + G DV++H A+ L G V + Q Sbjct: 4 GKVKWFDATKGFGFL----SQDDGPDVYVHADALPEGAAKTLKAGTRVEFGIAQ 53 >gi|153873831|ref|ZP_02002279.1| cold-shock DNA-binding domain family protein [Beggiatoa sp. PS] gi|152069703|gb|EDN67719.1| cold-shock DNA-binding domain family protein [Beggiatoa sp. PS] Length = 225 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G I + DKG+GFI PE + G+ +F H S++ + + G V YD + DA G Sbjct: 2 KGKILQWKDDKGFGFILPE---KGGEKLFFHISSIKNQSR-HPQVGDAVLYDS-ERDAQG 56 Query: 64 KYSAENLKL 72 + A+++ L Sbjct: 57 RLRAKSVVL 65 >gi|292654673|ref|YP_003534570.1| cold shock protein [Haloferax volcanii DS2] gi|17148925|gb|AAL35837.1|AF442116_1 conditioned medium-induced protein 9 [Haloferax volcanii] gi|291371479|gb|ADE03706.1| cold shock protein [Haloferax volcanii DS2] Length = 64 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G + ++N GYGFI+ + ++ DDVF H V +L EGQ + +D Q Sbjct: 3 KGKVDFFNDTGGYGFIS---TDDADDDVFFHMEDVGGP---DLEEGQEIEFDIEQ 51 >gi|55378475|ref|YP_136325.1| cold shock protein [Haloarcula marismortui ATCC 43049] gi|55231200|gb|AAV46619.1| cold shock protein [Haloarcula marismortui ATCC 43049] Length = 64 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ ++N GYGFI + + E DVF H V +L EGQ V +D Q D + Sbjct: 4 GTVDFFNDTGGYGFIETDDADE---DVFFHMEDVGGP---DLEEGQEVEFDIEQADKGPR 57 Query: 65 YSAENLK 71 A+NL+ Sbjct: 58 --AKNLE 62 >gi|152986409|ref|YP_001348696.1| hypothetical protein PSPA7_3336 [Pseudomonas aeruginosa PA7] gi|150961567|gb|ABR83592.1| hypothetical protein PSPA7_3336 [Pseudomonas aeruginosa PA7] Length = 238 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 +WY+ DKG+GFI P+ G+++FLH SA G +G V + DA G+ A Sbjct: 20 RWYD-DKGFGFIQPKA---GGEEIFLHISAF--RGDRRPLQGDQVWF-LASQDARGRLRA 72 Query: 68 ENLKL 72 E +L Sbjct: 73 ERARL 77 >gi|90075002|dbj|BAE87181.1| unnamed protein product [Macaca fascicularis] Length = 153 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 68 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 122 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 123 KNQKFQAVEVVL 134 >gi|55379499|ref|YP_137349.1| cold shock protein [Haloarcula marismortui ATCC 43049] gi|55232224|gb|AAV47643.1| cold shock protein [Haloarcula marismortui ATCC 43049] Length = 64 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G + ++N GYGFI+ E ++ DDVF H V +L EG+ + +D Q D Sbjct: 4 GKVDFFNDTGGYGFISTE---DADDDVFFHMEDVGGP---DLEEGEEIEFDIEQAD 53 >gi|125838843|ref|XP_001340141.1| PREDICTED: protein lin-28 homolog A-like [Danio rerio] Length = 198 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFI---TPEG-STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF+ T +G E+ DVF+H+S + G +L EG+ V + + Sbjct: 33 GVCKWFNVRMGFGFLSMNTRDGVPLETPVDVFVHQSKLHMEGFRSLKEGESVEFTF 88 >gi|3121926|sp|Q48493|CSPA_KLEPN RecName: Full=Major cold shock protein gi|1402753|gb|AAC80243.1| major cold-shock protein [Klebsiella pneumoniae] Length = 46 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 KG+GFI+P+ ++ DVF+H SA+ S L EGQ V++ Sbjct: 2 KGFGFISPKDGSK---DVFVHFSAIQSDSFKTLNEGQEVSF 39 >gi|323359215|ref|YP_004225611.1| cold shock proteins [Microbacterium testaceum StLB037] gi|323275586|dbj|BAJ75731.1| cold shock proteins [Microbacterium testaceum StLB037] Length = 127 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 4/36 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40 G +++Y+ +KG+GFI +T+ G DVFLH +A+ + Sbjct: 4 GKVRFYDEEKGFGFI----ATDDGQDVFLHATALPA 35 >gi|255965396|gb|ACU45003.1| cold shock protein [Pfiesteria piscicida] Length = 80 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 8/63 (12%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++K YNP KG+GFI EG DVF+H V G G +V+++ ++ Sbjct: 1 MSCQGTVKSYNPAKGWGFIDYEGQ-----DVFIH---VKDCGGAAPVAGDVVSFEVEKDP 52 Query: 61 ANG 63 G Sbjct: 53 VRG 55 >gi|311743491|ref|ZP_07717297.1| cold-shock domain family protein [Aeromicrobium marinum DSM 15272] gi|311312621|gb|EFQ82532.1| cold-shock domain family protein [Aeromicrobium marinum DSM 15272] Length = 131 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +KW++ KG+GF+ S++ G DV+LH A+ G+ + G V + Q Sbjct: 4 GKVKWFDAGKGFGFL----SSDEGPDVYLHADALPE-GMDTIKPGTRVEFGIAQ 52 >gi|238063669|ref|ZP_04608378.1| DNA binding protein [Micromonospora sp. ATCC 39149] gi|237885480|gb|EEP74308.1| DNA binding protein [Micromonospora sp. ATCC 39149] Length = 150 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G + ++ +GYGFI P+G GDDVF+H + V + L G V Y+ V+N+ K Sbjct: 4 GRVVRFDEVRGYGFIAPDG---GGDDVFVHANTV-DGDKWALGPGVPVEYEAVENERGPK 59 >gi|111025370|ref|YP_707790.1| cold shock protein CspA [Rhodococcus jostii RHA1] gi|110824349|gb|ABG99632.1| probable cold shock protein CspA [Rhodococcus jostii RHA1] Length = 79 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 8/63 (12%) Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 N +KG+GF P+G VF+H S +A G L EGQ + Y+ Q AEN Sbjct: 25 NGEKGFGFTAPDGG------VFVHFSEIAGRGFKTLDEGQHMEYEVSQGQKG--VQAENA 76 Query: 71 KLV 73 + Sbjct: 77 QTT 79 >gi|291457446|ref|ZP_06596836.1| conserved domain protein [Bifidobacterium breve DSM 20213] gi|51094320|gb|AAT95330.1| CspA [Bifidobacterium breve UCC2003] gi|159024131|gb|ABW87310.1| cold shock protein [Bifidobacterium breve] gi|291381281|gb|EFE88799.1| conserved domain protein [Bifidobacterium breve DSM 20213] Length = 79 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 7/55 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTY 54 +G++K++ KG+GFI P+ + G+DVF+H + + G N L EG V Y Sbjct: 3 QGTVKFFLAKKGFGFIQPD---DGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEY 54 >gi|32129843|sp|Q91YQ3|CSDC2_MOUSE RecName: Full=Cold shock domain-containing protein C2; AltName: Full=RNA-binding protein PIPPin gi|16359300|gb|AAH16109.1| Cold shock domain containing C2, RNA binding [Mus musculus] gi|148672599|gb|EDL04546.1| cold shock domain containing C2, RNA binding [Mus musculus] Length = 154 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 69 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKICPIPP 123 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 124 KNQKFQAVEVVL 135 >gi|17555742|ref|NP_499393.1| Y-box family member (cey-4) [Caenorhabditis elegans] gi|3874932|emb|CAA97783.1| C. elegans protein Y39A1C.3, confirmed by transcript evidence [Caenorhabditis elegans] gi|3880813|emb|CAA19509.1| C. elegans protein Y39A1C.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 294 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 5/60 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KW++ YGF+ + T+ +D F+H++A+ + L L + + V +D V+ Sbjct: 90 KGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVE 149 >gi|326384174|ref|ZP_08205856.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] gi|326197039|gb|EGD54231.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] Length = 139 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ KG+GF+ S G+DV++ +A+ A + L GQ V +D A G+ Sbjct: 4 GRVKWYDSAKGFGFL----SQTDGEDVYVRANAL-PADVPELKVGQKVEFDM----AAGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 RGPQALRV 62 >gi|296484122|gb|DAA26237.1| lin-28 homolog B-like [Bos taurus] Length = 255 Score = 37.0 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 39 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94 >gi|294677870|ref|YP_003578485.1| cold-shock DNA-binding domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294476690|gb|ADE86078.1| cold-shock DNA-binding domain protein [Rhodobacter capsulatus SB 1003] Length = 177 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFI E G D+ LH + + + G ++ + + VQ G Sbjct: 13 GRVKWFDAGKGFGFIL---DGEGGPDILLHANVLRNFGQSSVADNAGIRV-LVQATPRGA 68 Query: 65 YSAENLKLVPKSSN 78 + E L++ P ++ Sbjct: 69 QAVEVLEISPPETD 82 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G E DVF+H + +G +L G+ V ++ G+ + Sbjct: 109 VKWFDKGKGFGFANVFGRPE---DVFIHVEVLRRSGFADLAPGEAVCLRVIEGR-RGRMA 164 Query: 67 AE 68 A+ Sbjct: 165 AQ 166 >gi|269914112|ref|NP_663448.2| cold shock domain-containing protein C2 [Mus musculus] gi|26324880|dbj|BAC26194.1| unnamed protein product [Mus musculus] gi|74208901|dbj|BAE21201.1| unnamed protein product [Mus musculus] Length = 154 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 69 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKICPIPP 123 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 124 KNQKFQAVEVVL 135 >gi|188582438|ref|YP_001925883.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] gi|179345936|gb|ACB81348.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] Length = 181 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G IKW++ KG+GFI P+ + DV LH + + G +EG + + + + Sbjct: 18 GRIKWFDVSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEATRRE 70 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +G+GF++ T D+F+H + G+ L G+ V Y D + Sbjct: 112 VKWFNRLRGFGFLSRGDGTP---DIFVHMETLRRYGIAELKPGEQVLVRY--GDGSKGAM 166 Query: 67 AENLKLV 73 A ++LV Sbjct: 167 AAEVRLV 173 >gi|119776235|ref|YP_928975.1| cold-shock DNA-binding domain-containing protein [Shewanella amazonensis SB2B] gi|119768735|gb|ABM01306.1| cold-shock DNA-binding protein family [Shewanella amazonensis SB2B] Length = 186 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG + +N ++G+GFI PE + DDVF+H S++ G ++ + +Q + Sbjct: 1 MQRGKLIRWNDERGFGFIKPE--QDGADDVFIHISSLKQMSRAPRI-GDIIVFQ-LQTSS 56 Query: 62 NGKYSA 67 +GK A Sbjct: 57 DGKQQA 62 >gi|311255011|ref|XP_001928274.2| PREDICTED: cold shock domain-containing protein C2-like [Sus scrofa] Length = 153 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 68 VFKGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPP 122 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 123 KNQKFQAVEVVL 134 >gi|300781744|ref|ZP_07091598.1| cold-shock domain family protein [Corynebacterium genitalium ATCC 33030] gi|300533451|gb|EFK54512.1| cold-shock domain family protein [Corynebacterium genitalium ATCC 33030] Length = 127 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KG+GF++ G +DV++ ++ V G+ +L GQ + +D+ A G+ Sbjct: 4 GKVKWFDAEKGFGFVSNPGD----EDVYVGKN-VLPDGVEDLHPGQRIEFDF----AAGR 54 Query: 65 YSAENLKL 72 + L++ Sbjct: 55 RGPQALRV 62 >gi|3821925|gb|AAC69704.1| major cold shock protein [Streptococcus thermophilus] Length = 50 Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 KG+GFIT +E G D+F H S++ S G +L E Q V +D Sbjct: 1 KGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFD 38 >gi|332521006|ref|ZP_08397466.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4] gi|332043536|gb|EGI79732.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4] Length = 63 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFIT EG + D F+H + + + EG V +D +Q G Sbjct: 3 KGTVKFFNDTKGFGFITEEGVDK---DHFVHVTGIID----EIREGDDVEFD-LQEGKKG 54 Query: 64 KYSAENLKLV 73 +A N+K++ Sbjct: 55 -LNAVNVKVI 63 >gi|307823226|ref|ZP_07653456.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307736001|gb|EFO06848.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 190 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD-YVQND 60 + +G + +N DKG+GFI PE ++VF+H SA+ + + G ++ Y +V ND Sbjct: 4 IFKGKLNRWNDDKGFGFIIPENGN---NEVFIHISALKNMSRRPVV-GDVILYQLHVGND 59 Query: 61 ANGKYSAENLKL 72 GK A N K+ Sbjct: 60 --GKNKAINAKI 69 >gi|119897463|ref|YP_932676.1| hypothetical protein azo1172 [Azoarcus sp. BH72] gi|119669876|emb|CAL93789.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 51 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39 M H+G I + DKG+GFITP G+ VF+H SA A Sbjct: 1 MRHQGHISSWKDDKGFGFITP---AAGGEKVFVHISAFA 36 >gi|323454256|gb|EGB10126.1| hypothetical protein AURANDRAFT_62693 [Aureococcus anophagefferens] Length = 137 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 8/74 (10%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 H G ++WY K YGFI +G+ S D+F+H S + L G V+ +V + Sbjct: 39 HTGVVRWYTEKKHYGFIESKGA--SATDLFVHSSELEE----PLRAGDTVS--FVIGERR 90 Query: 63 GKYSAENLKLVPKS 76 G+ +A +++V ++ Sbjct: 91 GRSAATKVEVVERA 104 >gi|289581096|ref|YP_003479562.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] gi|289530649|gb|ADD05000.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] Length = 64 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++ ++N GYGFI E ++ DDVF H V +LTEG + +D Q Sbjct: 4 GTVDFFNDTGGYGFIETE---DADDDVFFHMEDVGGE---DLTEGTEIEFDIEQ 51 >gi|116003971|ref|NP_001070345.1| cold shock domain-containing protein C2 [Bos taurus] gi|115305132|gb|AAI23466.1| Cold shock domain containing C2, RNA binding [Bos taurus] gi|296486964|gb|DAA29077.1| RNA-binding protein pippin [Bos taurus] Length = 153 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 68 VFKGICKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKVCPIPP 122 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 123 KNQKFQAVEVVL 134 >gi|47123238|gb|AAH70000.1| Y box binding protein 1 [Danio rerio] Length = 310 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V + V+ + Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFAVVEGE 97 >gi|55379017|ref|YP_136867.1| cold shock protein [Haloarcula marismortui ATCC 43049] gi|55231742|gb|AAV47161.1| cold shock protein [Haloarcula marismortui ATCC 43049] Length = 64 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++ ++N GYGFI + + E DVF H V +L EGQ V +D Q D Sbjct: 3 EGTVDFFNDTGGYGFIETDDADE---DVFFHMEDVGGP---DLEEGQEVEFDIEQAD 53 >gi|312886814|ref|ZP_07746420.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] gi|311300641|gb|EFQ77704.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] Length = 65 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 4/30 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KGYGFI T+ G D+F+H Sbjct: 4 GKVKWFNTQKGYGFIV----TDDGKDLFVH 29 >gi|239994473|ref|ZP_04714997.1| integral membrane protein [Alteromonas macleodii ATCC 27126] Length = 165 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G I+ ++ KGYGF+ P G G F H A G ++ Y+ V+ D Sbjct: 1 MKYQGRIQQWDDAKGYGFVEPNG---GGTRAFTHIKAFKQRSR-RPVNGDIIVYE-VEQD 55 Query: 61 ANGKYSAENLKLV 73 NG + A N+ L+ Sbjct: 56 RNGNHRACNISLL 68 >gi|330893719|gb|EGH26380.1| cold shock domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 48 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 23/33 (69%) Query: 26 ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +SGDD+F+H A+ S G +L EGQ VT+ VQ Sbjct: 2 QSGDDLFVHFKAIESDGFKSLKEGQKVTFVAVQ 34 >gi|324518130|gb|ADY47012.1| Y-box-binding protein 2-B [Ascaris suum] Length = 323 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 7/59 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 G +KWY+ YGFI + + +DVF+H++A+A + L L +G+ V +D V+ Sbjct: 49 GKVKWYSVRYHYGFIARD--DDRANDVFVHQTAIAKSRIVKYYLRTLGDGEEVVFDIVE 105 >gi|256828357|ref|YP_003157085.1| cold-shock DNA-binding domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256577533|gb|ACU88669.1| cold-shock DNA-binding domain protein [Desulfomicrobium baculatum DSM 4028] Length = 168 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G I + D+G+GFITP G G VF+H SA+ G++VTY+ V N Sbjct: 1 MRFHGEISEWRDDRGFGFITPTG---GGTRVFVHISALQKGR--RPRAGEMVTYE-VGNS 54 Query: 61 ANGKYSAENLKLV 73 + A N+ V Sbjct: 55 GDKGPRALNVNFV 67 >gi|50955352|ref|YP_062640.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951834|gb|AAT89535.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 126 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 10/66 (15%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K+Y+ +KG+GFI S++ G +VFLH SA+ + + + G + + A+GK Sbjct: 4 GKVKFYDDEKGFGFI----SSDDGQEVFLHASALLAGAV--VKAGSRLEFGI----ADGK 53 Query: 65 YSAENL 70 A+ L Sbjct: 54 RGAQAL 59 >gi|24372324|ref|NP_716366.1| cold shock domain-contain protein [Shewanella oneidensis MR-1] gi|24346266|gb|AAN53811.1|AE015518_8 cold shock domain family protein [Shewanella oneidensis MR-1] Length = 203 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 ++ RG + +N +KG+GFI PE S DVF+H SA+ Sbjct: 2 LMDRGVLVRWNEEKGFGFIQPEQS--GARDVFIHISAL 37 >gi|149521716|ref|XP_001517644.1| PREDICTED: similar to LD37574p, partial [Ornithorhynchus anatinus] Length = 281 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57 G +KW+N GYGFI + +DVF+H+SA+ ++ EG++V +D V Sbjct: 38 GVVKWFNVRHGYGFIC---RIDMQEDVFIHQSAIVRNNPRKCQRSVGEGEVVQFDLV 91 >gi|313835454|gb|EFS73168.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL037PA2] gi|314928529|gb|EFS92360.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL044PA1] gi|314970448|gb|EFT14546.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL037PA3] Length = 135 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +++Y+ KG+GF+T +G G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 12 GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNALKPGQKVDFGIVE 60 >gi|300864970|ref|ZP_07109802.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300337026|emb|CBN54952.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 187 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 IKW N D+G+GFI P + G +VFLH SAV + G G + Y + +GK+ Sbjct: 11 IKW-NDDRGFGFIKP---SAGGREVFLHISAVKTKGR-RPKIGDTIFYKLTRG-TDGKFC 64 Query: 67 AENLKL 72 A + + Sbjct: 65 ASDASI 70 >gi|297518568|ref|ZP_06936954.1| cold shock protein CspE [Escherichia coli OP50] Length = 31 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 23/30 (76%), Gaps = 3/30 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFL 33 +G++KW+N KG+GFITPE ++ DVF+ Sbjct: 5 KGNVKWFNESKGFGFITPEDGSK---DVFV 31 >gi|162985|gb|AAA21677.1| transcription factor EF1(A) [Bos taurus] Length = 110 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++KW+N GYGFI ++ +DVF+H++A+ Sbjct: 61 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAI 91 >gi|300119946|gb|ADJ67998.1| Y-box protein [Samia ricini] Length = 264 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++KW+N GYGFI ++ +DVF+H++A+ Sbjct: 39 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQTAI 69 >gi|313159124|gb|EFR58499.1| cold-shock DNA-binding domain protein [Alistipes sp. HGB5] Length = 145 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 RG ++ +N DKGYGFI STE F H S + ++ EG LVT++ Sbjct: 84 RGRVEHFNTDKGYGFIKDLDSTEK---YFFHISNAPA----DIAEGALVTFE 128 >gi|300176002|emb|CBK22219.2| unnamed protein product [Blastocystis hominis] Length = 126 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-------LFNLTEGQLVTYDY 56 +G +KWY+ GYGFI+ E+ D F+H++ + S LFN E + D Sbjct: 22 KGVVKWYDGYMGYGFIS--TLDETPVDYFVHKTQIYSLDKFPRTPILFNKEEVEFAVCDT 79 Query: 57 VQNDANGKYSAENLKLVPK 75 + A + S + ++PK Sbjct: 80 EKGKAAEEVSLPDKTIIPK 98 >gi|328908285|gb|EGG28044.1| cold-shock DNA-binding domain protein [Propionibacterium sp. P08] Length = 127 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +++Y+ KG+GF+T +G G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 4 GKVRFYDATKGFGFLTKDG----GGDVYVNASAL-PAGVNALKPGQKVDFGIVE 52 >gi|6911694|emb|CAB72144.1| cold-shock protein A [Streptococcus thermophilus] Length = 45 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 KG+GFIT +E G D+F H S++ S G +L E Q V +D Sbjct: 2 KGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFD 39 >gi|76803160|ref|YP_331255.1| cold shock protein [Natronomonas pharaonis DSM 2160] gi|76559025|emb|CAI50623.1| probable cold shock protein [Natronomonas pharaonis DSM 2160] Length = 64 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++ ++N GYGFI E + E DVF H V +L EGQ V +D + D Sbjct: 4 GTVDFFNDTGGYGFIETEDADE---DVFFHMEDVGGP---DLEEGQEVEFDIEEAD 53 >gi|332667975|ref|YP_004450763.1| cold-shock DNA-binding domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332336789|gb|AEE53890.1| cold-shock DNA-binding domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 80 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 8/67 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H G++K++N KG+GFI S E + F+H + + + EG VT++ V+N Sbjct: 18 MHTGTVKFFNESKGFGFIVDNSSNE---EFFVHVTGLVD----KIREGDSVTFN-VENGR 69 Query: 62 NGKYSAE 68 G + E Sbjct: 70 KGMNAVE 76 >gi|153870420|ref|ZP_01999827.1| Cold-shock protein, DNA-binding [Beggiatoa sp. PS] gi|152073121|gb|EDN70180.1| Cold-shock protein, DNA-binding [Beggiatoa sp. PS] Length = 194 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G + + +KG+GFI PE G+DVF+H A EG ++ Y + Sbjct: 11 LQKGVLFTWKDEKGFGFILPEN---CGEDVFIHIRAFGKISR-RPKEGDIIYYHLKTTSS 66 Query: 62 N-GKYSAEN 69 N GKY A N Sbjct: 67 NKGKYRAYN 75 >gi|123301101|dbj|BAF45318.1| Y-box protein [Bombyx mori] Length = 272 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39 G++KW+N GYGFI ++ +DVF+H++A+A Sbjct: 40 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQTAIA 71 >gi|257053654|ref|YP_003131487.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM 12940] gi|256692417|gb|ACV12754.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM 12940] Length = 64 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++ ++N GYGFI E + E DVF H V +L EGQ V +D Q Sbjct: 4 GTVDFFNDTGGYGFIETEDADE---DVFFHMEDVGGP---DLEEGQEVEFDIEQ 51 >gi|225010634|ref|ZP_03701104.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-3C] gi|225005187|gb|EEG43139.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-3C] Length = 63 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFI+ EG +G + F+H S + + EG V ++ Q Sbjct: 1 MNKGTVKFFNDTKGFGFISEEG---AGKEHFVHISGLID----EIREGDEVEFELEQGKK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|47214418|emb|CAG00259.1| unnamed protein product [Tetraodon nigroviridis] Length = 179 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 8/58 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD------DVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ S+ G DVF+H+S + G +L EG+ + + + Sbjct: 6 GVCKWFNMRMGFGFIS--MSSRDGAPLDQNLDVFVHQSKLHMEGFRSLREGEALEFSF 61 >gi|301170784|dbj|BAJ12006.1| y box protein [Samia cynthia walkeri] Length = 139 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++KW+N GYGFI ++ +DVF+H++A+ Sbjct: 15 GTVKWFNVKSGYGFIN---RNDTKEDVFVHQTAI 45 >gi|149176767|ref|ZP_01855378.1| probable cold shock protein scoF [Planctomyces maris DSM 8797] gi|148844408|gb|EDL58760.1| probable cold shock protein scoF [Planctomyces maris DSM 8797] Length = 65 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 7/69 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IK KG+GFI TESG D+F H S + L EGQ V++ + + + Sbjct: 4 GTIKKVT-QKGFGFI----DTESGKDLFFHSSNLEGVSFEQLYEGQRVSFTEGRGEKGPR 58 Query: 65 YSAENLKLV 73 AEN+K + Sbjct: 59 --AENVKPI 65 >gi|332261688|ref|XP_003279897.1| PREDICTED: protein lin-28 homolog A-like [Nomascus leucogenys] Length = 208 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G ++L EG+ V + + Sbjct: 42 GICKWFNVRMGFGFLSMIARAGVALDPPVDVFVHQSKLHMEGFWSLKEGEAVEFTF 97 >gi|322369491|ref|ZP_08044056.1| cold-shock DNA-binding domain protein [Haladaptatus paucihalophilus DX253] gi|320551223|gb|EFW92872.1| cold-shock DNA-binding domain protein [Haladaptatus paucihalophilus DX253] Length = 64 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G + ++N GYGFI+ + +S DDVF H V +LTEG + +D Q Sbjct: 4 GKVDFFNDTGGYGFIS---TDDSDDDVFFHMEDVGGE---DLTEGTDIEFDIEQ 51 >gi|145284588|gb|ABP52041.1| cold shock protein [Psychrobacter sp. BJ3] Length = 27 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 5/31 (16%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLH 34 G +KW+N +KG+GFI P +SGD DVF+H Sbjct: 1 GQVKWFNAEKGFGFIAP----DSGDPDVFVH 27 >gi|86136205|ref|ZP_01054784.1| hypothetical protein MED193_18819 [Roseobacter sp. MED193] gi|85827079|gb|EAQ47275.1| hypothetical protein MED193_18819 [Roseobacter sp. MED193] Length = 463 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62 +G IK + DKG+GFI +G +E DVF H + V + + G++V +D ++ Sbjct: 2 QGKIKAFIHDKGFGFIEVDGQSE---DVFFHITTVKDSSV-RCAVGEIVDFDAAESKRKP 57 Query: 63 GKYSAENLKL 72 G A N++L Sbjct: 58 GTLEARNVRL 67 >gi|260752615|ref|YP_003225508.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283856365|ref|YP_162660.2| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|258551978|gb|ACV74924.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283775364|gb|AAV89549.2| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 189 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++KW+N KGYGF+ + D+F+H A +AG+ G+ + Q+D Sbjct: 123 TVKWFNRTKGYGFLIRNADQQ---DIFVHAEAFHAAGIKKFEAGKSLYACLRQSD 174 >gi|83951849|ref|ZP_00960581.1| cold shock DNA-binding domain protein [Roseovarius nubinhibens ISM] gi|83836855|gb|EAP76152.1| cold shock DNA-binding domain protein [Roseovarius nubinhibens ISM] Length = 129 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 IKW++ KG+GF G E DVF+H + +GL +L G+ + ++ G+ + Sbjct: 58 IKWFDKGKGFGFANTFGREE---DVFVHIEVLRRSGLADLQPGEALAIRVIEG-KRGRMA 113 Query: 67 AE 68 E Sbjct: 114 TE 115 >gi|114554895|ref|XP_513232.2| PREDICTED: protein lin-28 homolog A [Pan troglodytes] Length = 209 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF+ + + DVF+H+S + G +L EG+ V + + Sbjct: 42 GICKWFNVRMGFGFLCMTARAGVALDPHRDVFVHQSKLHMEGFRSLKEGEAVEFTF 97 >gi|295394518|ref|ZP_06804741.1| cold-shock domain family protein [Brevibacterium mcbrellneri ATCC 49030] gi|294972697|gb|EFG48549.1| cold-shock domain family protein [Brevibacterium mcbrellneri ATCC 49030] Length = 120 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 11/67 (16%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KG+GF+T ++ G D+FLH++A+ + G + +D V +G+ Sbjct: 4 GRVKWFDQEKGFGFVT----SDEG-DMFLHQTALPDG--VKVAPGTRLEFDVV----DGR 52 Query: 65 YSAENLK 71 + LK Sbjct: 53 RGKQVLK 59 >gi|262370718|ref|ZP_06064043.1| cold-shock DNA-binding domain-containing protein [Acinetobacter johnsonii SH046] gi|262314518|gb|EEY95560.1| cold-shock DNA-binding domain-containing protein [Acinetobacter johnsonii SH046] Length = 209 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 5/64 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 ++W++ +KGYGFI P + +S D VFLH A G + G + Y+ V DA G+Y Sbjct: 8 VEWFD-EKGYGFIQP--NDDSKDRVFLHIKDFARQGPRPIL-GCALEYN-VLVDAQGRYR 62 Query: 67 AENL 70 A+ + Sbjct: 63 AQQV 66 >gi|326798201|ref|YP_004316020.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] gi|326548965|gb|ADZ77350.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] Length = 63 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KG+GFI P G D+F+H S + + + E V+Y+ Q Sbjct: 1 MQEGVVKFFNETKGFGFIVP---NAGGGDIFVHSSGLIDS----IRENDHVSYEVEQGKK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|113971703|ref|YP_735496.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-4] gi|113886387|gb|ABI40439.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4] Length = 185 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG + +N +KG+GFI PE S G DVF+H + + ++ +QND Sbjct: 1 MERGILVRWNDEKGFGFIQPEDS--KGKDVFIHITVLKHMARKPQVGDSILYRTEIQNDG 58 Query: 62 NGK 64 K Sbjct: 59 KVK 61 >gi|149913750|ref|ZP_01902282.1| cold shock DNA-binding domain protein [Roseobacter sp. AzwK-3b] gi|149812034|gb|EDM71865.1| cold shock DNA-binding domain protein [Roseobacter sp. AzwK-3b] Length = 135 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G E DVF+H + +GL +L G+ + ++ G+ + Sbjct: 66 VKWFDKGKGFGFANTFGRDE---DVFVHVEVLRRSGLADLQPGEALAMRVIEG-KRGRMA 121 Query: 67 AE 68 E Sbjct: 122 TE 123 >gi|297467632|ref|XP_612469.5| PREDICTED: lin-28 homolog B [Bos taurus] Length = 254 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 39 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94 >gi|229595426|ref|XP_001017681.3| hypothetical protein TTHERM_00340170 [Tetrahymena thermophila] gi|225566130|gb|EAR97436.3| hypothetical protein TTHERM_00340170 [Tetrahymena thermophila SB210] Length = 801 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 8/68 (11%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYV 57 ++G++K+++ DK YGFI + ES D+F+H + AG L + + + + + Sbjct: 556 YKGTLKFFDQDKNYGFIVED---ESRTDIFVHFDDLQKAGIHKGILMDHKHSKSIRFQFS 612 Query: 58 QNDANGKY 65 D GKY Sbjct: 613 MMDYIGKY 620 >gi|163788488|ref|ZP_02182934.1| cold shock protein [Flavobacteriales bacterium ALC-1] gi|159876808|gb|EDP70866.1| cold shock protein [Flavobacteriales bacterium ALC-1] Length = 63 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 9/55 (16%) Query: 5 GSIKWYNPDKGYGFITPEGS-TESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++K++N KG+GFIT EGS TE F+H S + + EG V YD + Sbjct: 4 GTVKFFNDAKGFGFITEEGSNTEH----FVHISGLVDE----IREGDNVEYDLTE 50 >gi|289581524|ref|YP_003479990.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] gi|289531077|gb|ADD05428.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] Length = 64 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 6/54 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++ ++N GYGFI+ + ++ DDVF H V +L EGQ + +D Q Sbjct: 4 GNVDFFNDTGGYGFIS---TDDADDDVFFHMEDVGGP---DLEEGQDIEFDIEQ 51 >gi|255038433|ref|YP_003089054.1| cold-shock DNA-binding domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951189|gb|ACT95889.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM 18053] Length = 63 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 9/69 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KGYGFI P + D+F+H S + ++ E V+Y+ V+N G Sbjct: 4 GTVKFFNESKGYGFIQPSNGEK---DIFVHVSGLQD----DIRENDKVSYE-VENGRKG- 54 Query: 65 YSAENLKLV 73 +A N++++ Sbjct: 55 LNAVNVRVI 63 >gi|241761855|ref|ZP_04759941.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373769|gb|EER63329.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 189 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++KW+N KGYGF+ + D+F+H A +AG+ G+ + Q+D Sbjct: 123 TVKWFNRTKGYGFLIRNADQQ---DIFVHAEAFHAAGIKKFEAGKSLYACLRQSD 174 >gi|189066655|dbj|BAG36202.1| unnamed protein product [Homo sapiens] Length = 153 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY N Sbjct: 70 KGVCKQFSRSQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTYKMCPIPPKN 124 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 125 QKFQAVEVVL 134 >gi|55378476|ref|YP_136326.1| cold shock protein [Haloarcula marismortui ATCC 43049] gi|55231201|gb|AAV46620.1| cold shock protein [Haloarcula marismortui ATCC 43049] Length = 64 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ ++N GYGFI E S E DVF H + +L EGQ V ++ Q D + Sbjct: 4 GTVDFFNDTGGYGFIDTEDSDE---DVFFHMEDIDGP---DLEEGQEVEFEIEQADKGPR 57 Query: 65 YSAENL 70 A+NL Sbjct: 58 --AKNL 61 >gi|297478551|ref|XP_002707884.1| PREDICTED: lin-28 homolog B (C. elegans)-like [Bos taurus] Length = 254 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 39 GHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94 >gi|149640530|ref|XP_001506004.1| PREDICTED: similar to LIN28B [Ornithorhynchus anatinus] Length = 274 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGF---ITPEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF I+ EGS + DVF+H+S + G +L EG+ + + + Sbjct: 52 GHCKWFNVRMGFGFISMISREGSPLDPAVDVFVHQSKLHMEGFRSLKEGEPLEFTF 107 >gi|314982320|gb|EFT26413.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL110PA3] gi|315092638|gb|EFT64614.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL110PA4] Length = 127 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G +++Y+ KG+GF+T +G G DV+++ S V AG+ L GQ V + V+ Sbjct: 4 GKVRFYDATKGFGFLTKDG----GGDVYVNAS-VLPAGVNTLKPGQKVDFGIVE 52 >gi|313204176|ref|YP_004042833.1| cold-shock DNA-binding protein family [Paludibacter propionicigenes WB4] gi|312443492|gb|ADQ79848.1| cold-shock DNA-binding protein family [Paludibacter propionicigenes WB4] Length = 63 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFI+ +GS + + F+H S + + EG V +D +Q G Sbjct: 3 KGTVKFFNESKGFGFISEDGSKK---EHFVHISGLID----QIREGDTVEFD-LQEGKKG 54 Query: 64 KYSAENLKLV 73 +A N+K++ Sbjct: 55 -LNAVNVKVI 63 >gi|17298531|gb|AAL38166.1| putative cold shock protein [Bradyrhizobium japonicum] Length = 56 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 +G+GFITP+ ++ DVF+H A+ + G +L EGQ V++ +++ A G +A Sbjct: 2 QGFGFITPDDGSK---DVFVHFXAIQNDGYKSLDEGQKVSF-TIESGAKGPAAA 51 >gi|86130406|ref|ZP_01049006.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] gi|85819081|gb|EAQ40240.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] Length = 82 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K++N KG+GFI + S E +VF+H + V L E VT++ D Sbjct: 21 GKVKFFNTKKGFGFIAIDNSDE---EVFVHTTNVTG----RLRENDKVTFEV--EDGEKG 71 Query: 65 YSAENLKLVPK 75 SA N+K V K Sbjct: 72 PSAVNVKRVKK 82 >gi|149369607|ref|ZP_01889459.1| cold shock protein [unidentified eubacterium SCB49] gi|149357034|gb|EDM45589.1| cold shock protein [unidentified eubacterium SCB49] Length = 63 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT + ++G D+F+H + + L EG V +YV+ + Sbjct: 2 EGTVKFFNESKGFGFITND---DTGKDIFVHITGLNGQA---LNEGDKV--EYVEEEGRK 53 Query: 64 KYSAENLKLV 73 A ++++ Sbjct: 54 GMVAGQVRVI 63 >gi|268562898|ref|XP_002638697.1| Hypothetical protein CBG11894 [Caenorhabditis briggsae] gi|187029975|emb|CAP30963.1| hypothetical protein CBG_11894 [Caenorhabditis briggsae AF16] Length = 258 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 8/60 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KWY+ + YGFI+ + DVF+H++A+A + L L + + + +D V+ Sbjct: 62 QGKVKWYSVLRRYGFIS---RNDGEKDVFVHQTAIAKSNTEKFYLRTLADEEDIVFDLVE 118 >gi|28201200|dbj|BAC56735.1| cold shock protein [Janthinobacterium sp. J3] Length = 174 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G + +N ++G+GFI G++E FLH SA+ L G LVTY+ ++ D Sbjct: 1 MRLQGRVIEWNDERGFGFIIQNGTSER---TFLHISALRKTKGRPLL-GSLVTYE-IRRD 55 Query: 61 ANGKYSAENLKLV 73 G+ A +L+ Sbjct: 56 DKGRLQAVAAELI 68 >gi|332233044|ref|XP_003265713.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein A-like, partial [Nomascus leucogenys] Length = 362 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++KW+N GYGFI ++ +DVF+H++A+ Sbjct: 81 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAI 111 >gi|319955744|ref|YP_004167011.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] gi|319424404|gb|ADV51513.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] Length = 63 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 7/52 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++K++N KG+GFIT +G D F+H S + + EG +V +D Sbjct: 3 KGTVKFFNDTKGFGFITEDGVDR---DHFVHISGLID----EIREGDVVEFD 47 >gi|284166801|ref|YP_003405080.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] gi|284016456|gb|ADB62407.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] Length = 64 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G + ++N GYGFI + +S DDVF H V +LTEG + +D Q Sbjct: 4 GKVDFFNDTGGYGFIE---TDDSDDDVFFHMEDVGGE---DLTEGTEIEFDIEQ 51 >gi|148681705|gb|EDL13652.1| mCG50433 [Mus musculus] Length = 305 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 11/73 (15%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G+++W N GY FI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 60 GTVRWINVRNGYSFIN---RNDTKEDVFVHQTAIRKNNPRKYLRSVGDGETVEFDVVE-- 114 Query: 61 ANGKYSAENLKLV 73 G+ AE K+ Sbjct: 115 --GEKGAEAAKVT 125 >gi|54023130|ref|YP_117372.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54014638|dbj|BAD56008.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 89 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Query: 3 HRGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G++ W++ KG+GFI P EG VF+ S++ +G L EGQ V + Sbjct: 15 YHGTVAWFDAPKGFGFIEPAEGPR---GPVFVDFSSIEMSGYRTLVEGQPVRF 64 >gi|260062739|ref|YP_003195819.1| Cold shock protein [Robiginitalea biformata HTCC2501] gi|88784307|gb|EAR15477.1| Cold shock protein [Robiginitalea biformata HTCC2501] Length = 63 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 4/37 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 + +G++K++N KGYGFIT G DVF+H S + Sbjct: 1 MQKGTVKFFNESKGYGFIT----GVEGKDVFVHASGL 33 >gi|312092494|ref|XP_003147356.1| cold-shock DNA-binding domain-containing protein [Loa loa] gi|307757478|gb|EFO16712.1| cold-shock DNA-binding domain-containing protein [Loa loa] Length = 227 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 7/53 (13%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQ 58 +N GYGFI ++GDD+F+H++AV L +L +G+ V +D V+ Sbjct: 1 FNVKNGYGFIN---RADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVE 50 >gi|14548150|gb|AAK66807.1|U40238_30 RNA-binding cold-shock protein [uncultured crenarchaeote 4B7] Length = 64 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 12/54 (22%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++KW+N KG+GFI E + D+F+H++ + EGQ+ D V+ Sbjct: 4 GTVKWFNQTKGFGFIERENDDK---DLFVHKTEI---------EGQIRDGDKVE 45 >gi|73973951|ref|XP_539064.2| PREDICTED: similar to RNA-binding protein LIN-28 [Canis familiaris] Length = 251 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 31 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 86 >gi|209735380|gb|ACI68559.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|209738580|gb|ACI70159.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] Length = 111 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++KW+N GYGFI ++ +DVF+H++A+ Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAI 71 >gi|154494222|ref|ZP_02033542.1| hypothetical protein PARMER_03572 [Parabacteroides merdae ATCC 43184] gi|154086084|gb|EDN85129.1| hypothetical protein PARMER_03572 [Parabacteroides merdae ATCC 43184] Length = 152 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 6/54 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 V +G + ++N KGYGFI G SG+ F H V++ L +++E +VT++ Sbjct: 86 VLKGRVDYFNESKGYGFIKDLG---SGEKYFFH---VSNNTLTDISETDIVTFE 133 >gi|257069730|ref|YP_003155985.1| cold-shock DNA-binding protein family [Brachybacterium faecium DSM 4810] gi|256560548|gb|ACU86395.1| cold-shock DNA-binding protein family [Brachybacterium faecium DSM 4810] Length = 128 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +K+Y+ +KG+GFI E G V++H + + G+ L G V +D V +G Sbjct: 3 RGKVKFYDAEKGFGFIL---DDEDGQSVYVHATNLPD-GVTTLRPGTRVDFDMV----DG 54 Query: 64 KYSAENLKL 72 + + L L Sbjct: 55 RRGPQVLAL 63 >gi|255530444|ref|YP_003090816.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366] gi|255343428|gb|ACU02754.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366] Length = 63 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 9/58 (15%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + +G++K++N KG+GFI P +GD ++F+H S + + + E V+YD Q Sbjct: 1 MQQGTVKFFNETKGFGFIVP----ANGDSEIFVHSSGLIDS----IRENDSVSYDVEQ 50 >gi|257095960|ref|YP_003169601.1| cold-shock DNA-binding domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048484|gb|ACV37672.1| cold-shock DNA-binding domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 203 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K +N D+G+GFI P + G ++F+H A + L GQ +T++ ++ +A GK Sbjct: 5 GTLKSWNDDRGFGFIEP---SLGGQEIFVHIKAFETR-LGRPQIGQRLTFE-IEMNAEGK 59 Query: 65 YSAENLKLV 73 A+ ++ V Sbjct: 60 KRAKRVQPV 68 >gi|312132318|ref|YP_003999657.1| cspc1 [Bifidobacterium longum subsp. longum BBMN68] gi|311773581|gb|ADQ03069.1| CspC1 [Bifidobacterium longum subsp. longum BBMN68] Length = 79 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTY 54 + +G++K++ KG+GFI P+ + G DVF+H + + G N L EG V Y Sbjct: 1 MAQGTVKFFLAKKGFGFIQPD---DGGGDVFVHYAEIKDDGSTNKFKMLYEGDRVEY 54 >gi|289643977|ref|ZP_06476078.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] gi|289506205|gb|EFD27203.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] Length = 146 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQN 59 MV G I ++ +GYGFI P+ GDD+F+H + + LF G LV ++ ++ Sbjct: 1 MVGTGRILRFDGVRGYGFIAPDA---GGDDIFMHANDLQDEKHLFQ--PGTLVEFEAEES 55 Query: 60 DANGKYSAENL 70 D K S L Sbjct: 56 DRGPKASVVRL 66 >gi|196019570|ref|XP_002119003.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens] gi|190577377|gb|EDV18511.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens] Length = 203 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 11/18 (61%), Positives = 16/18 (88%) Query: 5 GSIKWYNPDKGYGFITPE 22 G++KW+NP+KGYGF+ E Sbjct: 5 GTVKWFNPEKGYGFVKQE 22 >gi|309790908|ref|ZP_07685450.1| hypothetical protein OSCT_1401 [Oscillochloris trichoides DG6] gi|308227022|gb|EFO80708.1| hypothetical protein OSCT_1401 [Oscillochloris trichoides DG6] Length = 190 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G I + D+GYGFITP+ G DVFLH S + Sbjct: 6 GKITMWKEDRGYGFITPD---HGGPDVFLHASIL 36 >gi|326801255|ref|YP_004319074.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] gi|326552019|gb|ADZ80404.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] Length = 65 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 4/30 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KG+GFI E G D+F+H Sbjct: 4 GKVKWFNAQKGFGFIIQ----EDGTDIFVH 29 >gi|284163596|ref|YP_003401875.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] gi|284013251|gb|ADB59202.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] Length = 64 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++ ++N GYGFI E + E DVF H + +L EGQ + +D Q Sbjct: 3 KGTVDFFNDTGGYGFIETEDADE---DVFFHMEDIGGP---DLEEGQELEFDIEQ 51 >gi|157960755|ref|YP_001500789.1| cold-shock DNA-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|157845755|gb|ABV86254.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC 700345] Length = 205 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G I +N DKG+GFI E VFLH SA AS G+ V + + D Sbjct: 6 VSTGVIDSWNDDKGFGFIQIP---EQKQQVFLHISAFASQSP-RPQSGKQVQFT-LAKDK 60 Query: 62 NGKYSAENLKLV 73 GK+ AE +L+ Sbjct: 61 QGKWRAEKAQLL 72 >gi|5714743|gb|AAD48060.1|AF171925_1 cold shock protein A [Rhodococcus sp. 5/14] Length = 57 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 3/40 (7%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47 +WYN DKG+G ITP+ ++ D F+H +A+ S +++ Sbjct: 3 RWYNADKGFGCITPDDGSK---DCFVHFTALRSERWLSIS 39 >gi|296225904|ref|XP_002758696.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus] Length = 207 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ ST + DVF+H+S + G +L + + V + + Sbjct: 42 GICKWFNVRMGFGFLSMTASTGVALDPAVDVFMHQSKLHMEGFRSLKKDEAVEFTF 97 >gi|326530806|dbj|BAK01201.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 149 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG IK + +KG+GFI P+G E VFLH S + G + EG +V++ Sbjct: 66 RGVIKNFCRNKGHGFIQPDGEAEP---VFLHISDI--EGEWCPKEGDVVSF 111 >gi|296128606|ref|YP_003635856.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] gi|296020421|gb|ADG73657.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] Length = 127 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 4/36 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40 G +KW++ ++G+GFI + + G +VFLH SA+ + Sbjct: 4 GKVKWFDTERGFGFI----ADDEGGEVFLHASALPA 35 >gi|313202310|ref|YP_004040968.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. MP688] gi|312441626|gb|ADQ85732.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688] Length = 201 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 7/74 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQN 59 M ++G I + +G+GFITP G G+ VFLH SA + EG +LV+Y+ Sbjct: 1 MRYQGRITTWKDKQGFGFITPNG---GGEPVFLHISAFSHRK--RRPEGDELVSYERTL- 54 Query: 60 DANGKYSAENLKLV 73 DA G+ A + V Sbjct: 55 DAKGRPQALKVAFV 68 >gi|301763343|ref|XP_002917091.1| PREDICTED: protein lin-28 homolog B-like [Ailuropoda melanoleuca] Length = 257 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 39 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94 >gi|218512161|ref|ZP_03509001.1| cold shock protein [Rhizobium etli 8C-3] Length = 37 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 26/35 (74%) Query: 37 AVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 AV AG+ +L +GQ ++YD V+++ +GK SA+ L+ Sbjct: 1 AVERAGMRDLKDGQKLSYDLVRDNKSGKMSADRLQ 35 >gi|148231151|ref|NP_001089414.1| cold shock domain protein A [Xenopus laevis] gi|62740182|gb|AAH94195.1| MGC115344 protein [Xenopus laevis] Length = 221 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 3/37 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40 +G++KW+N GYGFI ++ +DVF+H+ A A+ Sbjct: 37 QGTVKWFNVRNGYGFIN---RNDTKEDVFVHQGAEAA 70 >gi|262376761|ref|ZP_06069989.1| cold shock/excaliber domain-containing protein CspD [Acinetobacter lwoffii SH145] gi|262308471|gb|EEY89606.1| cold shock/excaliber domain-containing protein CspD [Acinetobacter lwoffii SH145] Length = 240 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 M G IK YN D+G+GFI EG ++ D+F H Sbjct: 1 MFQEGKIKTYNEDRGFGFIQIEGQSK---DLFFH 31 >gi|148232804|ref|NP_001080597.1| calcium regulated heat stable protein 1, 24kDa [Xenopus laevis] gi|27696469|gb|AAH44047.1| Carhsp1-prov protein [Xenopus laevis] Length = 100 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 3/33 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 V++G K ++ KG+GFITPE + G D+FLH Sbjct: 68 VYKGVCKSFSRSKGHGFITPE---DGGPDIFLH 97 >gi|302549706|ref|ZP_07302048.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302467324|gb|EFL30417.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 164 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +G + ++ KGYGFI P+ G+DVF+H + +A G LT G V +D + Sbjct: 3 QGVVVRFDDVKGYGFIAPD---NGGEDVFVHVNDLAEPGT-TLTSGTRVVFDVL 52 >gi|257386410|ref|YP_003176183.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] gi|257168717|gb|ACV46476.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] Length = 64 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++ ++N GYGFI E ++ DDVF H V +L EG V +D Q D Sbjct: 4 GTVDFFNDTGGYGFIETE---DADDDVFFHMEDVGGP---DLEEGTDVEFDIEQAD 53 >gi|149278086|ref|ZP_01884225.1| cold shock protein [Pedobacter sp. BAL39] gi|149231284|gb|EDM36664.1| cold shock protein [Pedobacter sp. BAL39] Length = 63 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KG+GFI P S ES ++F+H + + L ++ E VTYD V+ Sbjct: 1 MQEGVVKFFNETKGFGFIIP-NSGES--EIFVHSTGL----LADIRENDKVTYD-VEEGR 52 Query: 62 NGKYSAENLKLV 73 G +A N+K++ Sbjct: 53 KG-LNAVNVKVI 63 >gi|157816953|ref|NP_001102739.1| protein lin-28 homolog A [Rattus norvegicus] gi|149024199|gb|EDL80696.1| rCG30757 [Rattus norvegicus] Length = 209 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97 >gi|332218575|ref|XP_003258430.1| PREDICTED: protein lin-28 homolog B-like [Nomascus leucogenys] Length = 250 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87 >gi|296207133|ref|XP_002750510.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus] Length = 209 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97 >gi|257387381|ref|YP_003177154.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] gi|257169688|gb|ACV47447.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] Length = 64 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G++ ++N GYGFI E ++ DDVF H V +L EG V +D Q D Sbjct: 4 GTVDFFNDTGGYGFIETE---DADDDVFFHMEDVGGP---DLEEGTDVDFDIEQAD 53 >gi|109072184|ref|XP_001086990.1| PREDICTED: protein lin-28 homolog B isoform 1 [Macaca mulatta] Length = 248 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87 >gi|291045286|ref|NP_001166916.1| protein lin-28 homolog A [Felis catus] gi|73950555|ref|XP_854985.1| PREDICTED: similar to RNA-binding protein LIN-28 [Canis familiaris] gi|264670123|gb|ACY72346.1| lin-28-like protein [Felis catus] Length = 206 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 93 >gi|51972214|ref|NP_001004317.1| protein lin-28 homolog B [Homo sapiens] gi|74758701|sp|Q6ZN17|LN28B_HUMAN RecName: Full=Protein lin-28 homolog B; Short=Lin-28B gi|47077279|dbj|BAD18558.1| unnamed protein product [Homo sapiens] gi|71724934|gb|AAZ38897.1| LIN28B [Homo sapiens] gi|119568819|gb|EAW48434.1| lin-28 homolog B (C. elegans), isoform CRA_b [Homo sapiens] gi|123239097|emb|CAI21661.2| lin-28 homolog B (C. elegans) [Homo sapiens] gi|123240273|emb|CAI20969.2| lin-28 homolog B (C. elegans) [Homo sapiens] gi|187953595|gb|AAI37527.1| Lin-28 homolog B (C. elegans) [Homo sapiens] gi|223459806|gb|AAI37528.1| Lin-28 homolog B (C. elegans) [Homo sapiens] Length = 250 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87 >gi|284036854|ref|YP_003386784.1| Cold-shock protein DNA-binding protein [Spirosoma linguale DSM 74] gi|283816147|gb|ADB37985.1| Cold-shock protein DNA-binding protein [Spirosoma linguale DSM 74] Length = 290 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 VH G +K Y P+KG+GF++ +++ DVF H V + + +L +YD Sbjct: 3 VHFGVVKKYFPEKGFGFVSHPLDSKTRQDVFFHIKNVQKSN--KVIAEKLSSYD 54 >gi|226953537|ref|ZP_03824001.1| cold-shock DNA-binding protein family protein [Acinetobacter sp. ATCC 27244] gi|226835715|gb|EEH68098.1| cold-shock DNA-binding protein family protein [Acinetobacter sp. ATCC 27244] Length = 232 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G IK YN D+G+GFI E D+F H + G T G+LV + V++ Sbjct: 1 MFLTGKIKNYNSDRGFGFIEVE---HDRSDIFFHITDFPKIGGEPKT-GELVKFLIVED- 55 Query: 61 ANGKYSAENL 70 GK+ A N+ Sbjct: 56 -KGKFKATNI 64 >gi|224370464|ref|YP_002604628.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2] gi|223693181|gb|ACN16464.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2] Length = 217 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 9/74 (12%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE--GQLVTYDYVQ 58 M+ RG+I ++N KG+GFITP G +F H + S NL Q +TY + Sbjct: 1 MLRRGTITFWNDGKGFGFITPNA---GGKQLFFH---IKSCSPHNLRPEINQSITYS-LS 53 Query: 59 NDANGKYSAENLKL 72 D G+ A + L Sbjct: 54 VDKQGRPCAVKVIL 67 >gi|308806684|ref|XP_003080653.1| glycogen debranching enzyme (ISS) [Ostreococcus tauri] gi|116059114|emb|CAL54821.1| glycogen debranching enzyme (ISS) [Ostreococcus tauri] Length = 141 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL 51 R + W+N +GYG++ P +E DVF+H+S + G ++ E +L Sbjct: 40 RREQVTWFNCVRGYGYVRPHDGSE---DVFVHQSELQMDGFRSVWEVRL 85 >gi|114608662|ref|XP_001143138.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 269 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 51 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 106 >gi|300796242|ref|NP_001179986.1| protein lin-28 homolog A [Bos taurus] gi|297472202|ref|XP_002685742.1| PREDICTED: lin-28 homolog [Bos taurus] gi|296490058|gb|DAA32171.1| lin-28 homolog [Bos taurus] Length = 205 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 93 >gi|178056460|ref|NP_001116605.1| protein lin-28 homolog A [Sus scrofa] gi|169627101|gb|ACA58282.1| LIN28 [Sus scrofa] Length = 205 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 93 >gi|328860156|gb|EGG09263.1| hypothetical protein MELLADRAFT_104398 [Melampsora larici-populina 98AG31] Length = 334 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLF-NLTEGQLVTY 54 +G K++N KG+GFI + E G+ +VF+H +++ G F +L EG+ V Y Sbjct: 31 KGVCKFFNSQKGFGFINDDHPDELGNQEVFVHYTSIGGKGGFRSLAEGEEVEY 83 >gi|110597967|ref|ZP_01386248.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] gi|110340416|gb|EAT58905.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] Length = 70 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%) Query: 5 GSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNL 46 G +KW++ KG+GFI P G G+D+F+H S + S F Sbjct: 4 GKVKWFDVRKGFGFILNPNG----GEDIFVHFSNIVSEEKFRF 42 >gi|296237954|ref|XP_002763968.1| PREDICTED: hypothetical protein LOC100400889 [Callithrix jacchus] Length = 297 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V +G K ++ +G+GFITPE +E D+F+H S + G + EG VTY Sbjct: 212 VFKGVCKQFSRAQGHGFITPENGSE---DIFVHVSDI--EGEYVPVEGDEVTY 259 >gi|268564326|ref|XP_002639074.1| C. briggsae CBR-CEY-2 protein [Caenorhabditis briggsae] Length = 256 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 8/60 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KWY+ + YGFI+ + D+F+H++A+A + L L + + + +D V+ Sbjct: 62 QGKVKWYSVLRRYGFIS---RNDGEKDIFVHQTAIAKSDTEKFYLRTLADEEDIVFDLVE 118 >gi|114608664|ref|XP_001143220.1| PREDICTED: protein lin-28 homolog B isoform 2 [Pan troglodytes] Length = 250 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87 >gi|332293275|ref|YP_004431884.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171361|gb|AEE20616.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 63 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K++N KG+GFIT EG + D F+H S + + EG V ++ + Sbjct: 1 MNNGTVKFFNDTKGFGFITEEGVEK---DHFVHISGLIDE----IREGDQVEFEL--KEG 51 Query: 62 NGKYSAENLKLV 73 N +A N++++ Sbjct: 52 NKGLNAVNVRVI 63 >gi|297665898|ref|XP_002811262.1| PREDICTED: protein lin-28 homolog A-like [Pongo abelii] Length = 209 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97 >gi|209736846|gb|ACI69292.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|303658085|gb|ADM15905.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] Length = 194 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++KW+N GYGFI ++ +DVF+H++A+ Sbjct: 41 GTVKWFNVRNGYGFIN---RNDTKEDVFVHQTAI 71 >gi|163752832|ref|ZP_02159956.1| cold shock protein [Kordia algicida OT-1] gi|161326564|gb|EDP97889.1| cold shock protein [Kordia algicida OT-1] Length = 63 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 9/53 (16%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL------FNLTEGQ 50 RG++K++N KG+GFI EGS + + F+H S + F LTEG+ Sbjct: 3 RGTVKFFNDTKGFGFIVEEGSNK---EHFVHISGLIDEVRQGDEVEFELTEGR 52 >gi|332245102|ref|XP_003271702.1| PREDICTED: protein lin-28 homolog A-like [Nomascus leucogenys] Length = 209 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97 >gi|255011084|ref|ZP_05283210.1| putative DNA-binding protein [Bacteroides fragilis 3_1_12] gi|313148891|ref|ZP_07811084.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137658|gb|EFR55018.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 146 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 7/53 (13%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 H G I+++N KGYGF+ T++G+ F H S+ + + EG VT++ Sbjct: 83 HMGRIEYFNAAKGYGFVK---DTDNGEKYFFHISSAPA----TIAEGDRVTFE 128 >gi|221052274|ref|XP_002257713.1| cold-shock protein [Plasmodium knowlesi strain H] gi|193807544|emb|CAQ38049.1| cold-shock protein, putative [Plasmodium knowlesi strain H] Length = 144 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47 G++ ++ KGYGFI P + G D+F+H + + A F+LT Sbjct: 34 GTVIKFDRRKGYGFIKP---NDGGPDIFVHYTDICQARTFSLT 73 >gi|22003878|ref|NP_665832.1| protein lin-28 homolog A [Mus musculus] gi|81914711|sp|Q8K3Y3|LN28A_MOUSE RecName: Full=Protein lin-28 homolog A; Short=Lin-28A; AltName: Full=Testis-expressed protein 17 gi|21842298|gb|AAM77749.1|AF521097_1 RNA-binding protein LIN-28 [Mus musculus] gi|126540562|emb|CAM46107.1| lin-28 homolog (C. elegans) [Mus musculus] gi|148698092|gb|EDL30039.1| lin-28 homolog (C. elegans) [Mus musculus] Length = 209 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97 >gi|295398664|ref|ZP_06808688.1| cold shock protein CspA [Aerococcus viridans ATCC 11563] gi|294973099|gb|EFG48902.1| cold shock protein CspA [Aerococcus viridans ATCC 11563] Length = 70 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M + G +K +N +G+GFI E G D+F+H SA+ +LT GQ V ++ + Sbjct: 1 MTYYGIVKTFNEKEGFGFIELPDFPEEG-DIFVHFSALLHLEQSSLTVGQKVHFEIAE 57 >gi|46329818|gb|AAH68304.1| Lin-28 homolog (C. elegans) [Mus musculus] Length = 209 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97 >gi|332187120|ref|ZP_08388860.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17] gi|332012820|gb|EGI54885.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17] Length = 189 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50 ++KW+N KGYGF+ G D+F+H + G+ + GQ Sbjct: 124 AVKWFNRLKGYGFLL---RDSDGADIFVHMETLRRGGIVEVEPGQ 165 >gi|297291425|ref|XP_002803893.1| PREDICTED: protein lin-28 homolog B isoform 2 [Macaca mulatta] Length = 255 Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 39 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94 >gi|296208902|ref|XP_002751304.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus] Length = 208 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDD----VFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ D VF+H+S + G +L EG+ V + + Sbjct: 42 GICKWFNVRMGFGFLSMTARARVALDPPVNVFVHQSKLHMEGFRSLKEGEAVEFTF 97 >gi|262369347|ref|ZP_06062675.1| cold-shock DNA-binding domain-containing protein [Acinetobacter johnsonii SH046] gi|262315415|gb|EEY96454.1| cold-shock DNA-binding domain-containing protein [Acinetobacter johnsonii SH046] Length = 97 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 7/33 (21%) Query: 3 HRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLH 34 ++G +K YN DKG+GFI +PEG DVF H Sbjct: 6 YQGKVKQYNADKGFGFISSPEG------DVFFH 32 >gi|126328607|ref|XP_001363469.1| PREDICTED: similar to RNA-binding protein LIN-28 [Monodelphis domestica] Length = 205 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 39 GICKWFNVRMGFGFLSMTARAGVALDQPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 94 >gi|218263152|ref|ZP_03477371.1| hypothetical protein PRABACTJOHN_03052 [Parabacteroides johnsonii DSM 18315] gi|218222937|gb|EEC95587.1| hypothetical protein PRABACTJOHN_03052 [Parabacteroides johnsonii DSM 18315] Length = 154 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 6/54 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 V +G + ++N KGYGFI G SG+ F H V++ L +++E +VT++ Sbjct: 86 VLKGRVDYFNESKGYGFIKDLG---SGEKYFFH---VSNNTLTDISETDIVTFE 133 >gi|13375938|ref|NP_078950.1| protein lin-28 homolog A [Homo sapiens] gi|74752750|sp|Q9H9Z2|LN28A_HUMAN RecName: Full=Protein lin-28 homolog A; Short=Lin-28A; AltName: Full=Zinc finger CCHC domain-containing protein 1 gi|21842304|gb|AAM77751.1|AF521099_1 RNA-binding protein LIN-28 [Homo sapiens] gi|10433955|dbj|BAB14075.1| unnamed protein product [Homo sapiens] gi|20306208|gb|AAH28566.1| LIN28 protein [Homo sapiens] gi|56206248|emb|CAI21500.1| lin-28 homolog (C. elegans) [Homo sapiens] gi|119628219|gb|EAX07814.1| lin-28 homolog (C. elegans), isoform CRA_a [Homo sapiens] gi|123993445|gb|ABM84324.1| lin-28 homolog (C. elegans) [synthetic construct] gi|124000419|gb|ABM87718.1| lin-28 homolog (C. elegans) [synthetic construct] gi|261860154|dbj|BAI46599.1| lin-28 homolog [synthetic construct] Length = 209 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97 >gi|297678780|ref|XP_002817240.1| PREDICTED: LOW QUALITY PROTEIN: protein lin-28 homolog B-like [Pongo abelii] Length = 269 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 51 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 106 >gi|84498519|ref|ZP_00997289.1| cold shock protein [Janibacter sp. HTCC2649] gi|84381262|gb|EAP97146.1| cold shock protein [Janibacter sp. HTCC2649] Length = 134 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K+Y+ +KG+GF++ + E G DVF+ SA+ G+ L G + + V+ G+ Sbjct: 4 GKVKFYDSEKGFGFVSTDDPAEGG-DVFVPSSALPE-GVTALKNGARIEFGIVE----GR 57 Query: 65 YSAENLKL 72 A+ L + Sbjct: 58 RGAQALSV 65 >gi|295134497|ref|YP_003585173.1| cold shock protein [Zunongwangia profunda SM-A87] gi|294982512|gb|ADF52977.1| cold shock protein [Zunongwangia profunda SM-A87] Length = 63 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 7/52 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++K++N KG+GFIT EG + D F+H + + + EG V +D Sbjct: 3 KGTVKFFNDSKGFGFITEEGVDK---DHFVHVTGLID----EIREGDEVKFD 47 >gi|301755044|ref|XP_002913351.1| PREDICTED: protein lin-28 homolog A-like [Ailuropoda melanoleuca] gi|281351598|gb|EFB27182.1| hypothetical protein PANDA_001150 [Ailuropoda melanoleuca] Length = 206 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 93 >gi|119568818|gb|EAW48433.1| lin-28 homolog B (C. elegans), isoform CRA_a [Homo sapiens] Length = 257 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 39 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94 >gi|293345049|ref|XP_002725925.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 1 [Rattus norvegicus] gi|293356922|ref|XP_001069344.2| PREDICTED: lin-28 homolog B isoform 1 [Rattus norvegicus] Length = 271 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EG+ + DVF+H+S + G +L EG+ V + + Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 85 >gi|293345053|ref|XP_002725927.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 3 [Rattus norvegicus] gi|293356924|ref|XP_002729026.1| PREDICTED: lin-28 homolog B isoform 2 [Rattus norvegicus] gi|149046920|gb|EDL99668.1| rCG58531, isoform CRA_b [Rattus norvegicus] Length = 316 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EG+ + DVF+H+S + G +L EG+ V + + Sbjct: 75 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 130 >gi|148673097|gb|EDL05044.1| lin-28 homolog B (C. elegans), isoform CRA_b [Mus musculus] Length = 281 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EG+ + DVF+H+S + G +L EG+ V + + Sbjct: 40 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 95 >gi|281352788|gb|EFB28372.1| hypothetical protein PANDA_005261 [Ailuropoda melanoleuca] Length = 276 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 58 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 113 >gi|213512442|ref|NP_001133414.1| cold shock domain-containing protein C2 [Salmo salar] gi|209153912|gb|ACI33188.1| Cold shock domain-containing protein C2 [Salmo salar] Length = 159 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K + +G+GFI P T GDD+F+H S + G + EG VTY + N Sbjct: 72 KGVCKSFCRSQGHGFIRP---TNGGDDIFVHISDI--EGEYVPVEGDEVTYKVSRIPPKN 126 Query: 63 GKYSAENLKLV 73 K A +K+V Sbjct: 127 LKIQAVEVKIV 137 >gi|117921981|ref|YP_871173.1| cold-shock DNA-binding protein family protein [Shewanella sp. ANA-3] gi|117614313|gb|ABK49767.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3] Length = 192 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG + +N +KG+GFI PE + G DVF+H + + ++ +QND Sbjct: 1 MERGILVRWNDEKGFGFIQPE---QQGKDVFIHITVLKHMARKPQVGDSILYRTEIQNDG 57 Query: 62 NGK 64 K Sbjct: 58 KVK 60 >gi|291399525|ref|XP_002716148.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus] gi|291409216|ref|XP_002720890.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus] Length = 209 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 97 >gi|227494398|ref|ZP_03924714.1| cold shock protein [Actinomyces coleocanis DSM 15436] gi|226832132|gb|EEH64515.1| cold shock protein [Actinomyces coleocanis DSM 15436] Length = 125 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 4/34 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G +K+++ DKG+GFI ++ G+ VFLH SA+ Sbjct: 4 GKVKFFDADKGFGFI----ESDDGESVFLHASAL 33 >gi|296198875|ref|XP_002746913.1| PREDICTED: protein lin-28 homolog B-like isoform 1 [Callithrix jacchus] Length = 250 Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 32 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 87 >gi|218196316|gb|EEC78743.1| hypothetical protein OsI_18955 [Oryza sativa Indica Group] Length = 66 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 3/46 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 +KW++ KG+GFIT E +E D+F+ +S++ G ++ +G ++ Sbjct: 2 VKWFDTTKGFGFITLEDGSE---DLFVRQSSLKFDGYQSINDGDVI 44 >gi|145284582|gb|ABP52038.1| cold shock protein [Psychrobacter sp. BJ3] Length = 27 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 5/31 (16%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLH 34 G +KW+N +KG+GFI P +SGD DVF+H Sbjct: 1 GLVKWFNAEKGFGFIAP----DSGDPDVFVH 27 >gi|332669174|ref|YP_004452182.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338212|gb|AEE44795.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484] Length = 126 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 4/36 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40 G +KW++ ++G+GFI + + G +VFLH SA+ + Sbjct: 4 GKVKWFDTERGFGFI----ADDDGGEVFLHASALPA 35 >gi|120437418|ref|YP_863104.1| cold shock-like protein [Gramella forsetii KT0803] gi|117579568|emb|CAL68037.1| cold shock-like protein [Gramella forsetii KT0803] Length = 64 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 6/52 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G++K++N KGYGFIT + ++ D+F+H + + L EG V Y+ Sbjct: 2 QGTVKFFNESKGYGFITND---DTKRDIFVHITGLNGE---TLQEGDRVEYE 47 >gi|78042603|ref|NP_001026942.1| protein lin-28 homolog B [Mus musculus] gi|71724928|gb|AAZ38894.1| LIN28B [Mus musculus] gi|111598825|gb|AAH89037.1| Lin-28 homolog B (C. elegans) [Mus musculus] Length = 271 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EG+ + DVF+H+S + G +L EG+ V + + Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 85 >gi|254439666|ref|ZP_05053160.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus 307] gi|198255112|gb|EDY79426.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus 307] Length = 181 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G DVF+H + AGL +L G+ + +Q G + Sbjct: 112 VKWFDKGKGFGFANVFGDDA---DVFVHNEVLRLAGLADLFSGEAIALRAMQGK-RGLMA 167 Query: 67 AENL 70 AE L Sbjct: 168 AEVL 171 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G IKW++ KG+GFI + + G D+ LH + + + G ++ +G + +V Sbjct: 14 VAAGHIKWFDAVKGFGFILVQ---DGGADILLHANVLRNFGQSSVADGTGIEV-WVAQTE 69 Query: 62 NGKYSAENLKL 72 G + E L + Sbjct: 70 RGLQAVEILSM 80 >gi|114564799|ref|YP_752313.1| cold-shock DNA-binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114336092|gb|ABI73474.1| cold-shock DNA-binding protein family [Shewanella frigidimarina NCIMB 400] Length = 204 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG++ +N +KG+GFI PE T DVF+H S + + +++ + +N Sbjct: 1 MERGTLIRWNTEKGFGFIKPE--TGDNQDVFIHISTLKHMARKPIVGDEILFHR--ENQP 56 Query: 62 NGKYSA 67 +GK A Sbjct: 57 DGKVKA 62 >gi|163755667|ref|ZP_02162786.1| cold shock protein [Kordia algicida OT-1] gi|161324580|gb|EDP95910.1| cold shock protein [Kordia algicida OT-1] Length = 69 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 11/71 (15%) Query: 4 RGSIKWYNPDKGYGFITPEGS-TESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++K++N KG+GFIT EG+ TE F+H S + + EG V +D +Q Sbjct: 9 KGTVKFFNDTKGFGFITEEGTNTEH----FVHISGLIDE----VREGDEVEFD-LQEGRK 59 Query: 63 GKYSAENLKLV 73 G +A N+K++ Sbjct: 60 G-LNAVNVKVI 69 >gi|149695055|ref|XP_001504139.1| PREDICTED: RNA-binding protein LIN-28 [Equus caballus] Length = 205 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTF 93 >gi|84623636|ref|YP_451008.1| hypothetical protein XOO_1979 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|121632095|ref|YP_001001457.1| integral membrane protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|188576851|ref|YP_001913780.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188577043|ref|YP_001913972.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|84367576|dbj|BAE68734.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|116247011|gb|ABJ89937.1| integral membrane protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|188521303|gb|ACD59248.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521495|gb|ACD59440.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 60 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G ++ +N KG GF TP G GD F+H SA A G+++TY ++ D Sbjct: 1 MRYQGRLRDWNDHKGVGFATPNG---GGDRAFVHISAFAQQSR-RPRNGEIITY-AIERD 55 Query: 61 ANGK 64 A + Sbjct: 56 AQKR 59 >gi|327404541|ref|YP_004345379.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM 16823] gi|327320049|gb|AEA44541.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM 16823] Length = 63 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 10/71 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFI E D+F+H + + ++ E VTYD +N Sbjct: 1 MNKGTVKFFNDAKGFGFIKGENEQ----DIFVHATGLNQ----DIRENDNVTYD-TENGR 51 Query: 62 NGKYSAENLKL 72 NG +A N+ L Sbjct: 52 NG-LNAVNVSL 61 >gi|312892429|ref|ZP_07751924.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] gi|311295213|gb|EFQ72387.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] Length = 65 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 M G++K++N KG+GFI P +E +VF+H S + Sbjct: 1 MQKEGTVKFFNETKGFGFIIPADGSE---EVFVHSSGL 35 >gi|297665296|ref|XP_002811006.1| PREDICTED: LOW QUALITY PROTEIN: nuclease-sensitive element-binding protein 1-like [Pongo abelii] Length = 546 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 8/61 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVF-LHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF +H++A+ L ++ +G+ V +D V+ Sbjct: 282 GTVKWFNVRNGYGFIN---RNDTKEDVFVVHQTAIKKNXPRRYLRSVGDGETVEFDVVEG 338 Query: 60 D 60 + Sbjct: 339 E 339 >gi|296198877|ref|XP_002746914.1| PREDICTED: protein lin-28 homolog B-like isoform 2 [Callithrix jacchus] Length = 257 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 39 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94 >gi|254453709|ref|ZP_05067146.1| cold shock DNA-binding domain protein [Octadecabacter antarcticus 238] gi|198268115|gb|EDY92385.1| cold shock DNA-binding domain protein [Octadecabacter antarcticus 238] Length = 177 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42 V +G +KW++ KG+GFI + E G D+ LH + + + G Sbjct: 10 VMKGHVKWFDAGKGFGFIL---AQEGGADILLHANVLRNFG 47 >gi|87308022|ref|ZP_01090164.1| probable cold shock protein scoF [Blastopirellula marina DSM 3645] gi|87289104|gb|EAQ80996.1| probable cold shock protein scoF [Blastopirellula marina DSM 3645] Length = 65 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IK DKG+GFI GS D+F H A+ +L EGQ VT+ Q Sbjct: 4 GTIKKLT-DKGFGFINTGGSK----DLFFHSKALQGVSFDDLHEGQNVTFTEAQGPKG-- 56 Query: 65 YSAENLK 71 AEN++ Sbjct: 57 PCAENVR 63 >gi|195014627|ref|XP_001984048.1| GH16224 [Drosophila grimshawi] gi|193897530|gb|EDV96396.1| GH16224 [Drosophila grimshawi] Length = 142 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +K ++ KG+GFITP G G+DVF H S + G + EG V Y Sbjct: 57 GVVKSFSRTKGHGFITPNG---GGEDVFCHVSDI--EGEYVPMEGDEVKY 101 >gi|308497891|ref|XP_003111132.1| hypothetical protein CRE_03839 [Caenorhabditis remanei] gi|308240680|gb|EFO84632.1| hypothetical protein CRE_03839 [Caenorhabditis remanei] Length = 263 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 9/69 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KWY+ + YGFI+ E + DVF+H++A+A + L L + + V +D V+ Sbjct: 63 QGKVKWYSVLRRYGFISRE---DGEKDVFVHQTAIAKSATEKFYLRTLGDEEEVIFDLVE 119 Query: 59 NDANGKYSA 67 NG +A Sbjct: 120 GK-NGPEAA 127 >gi|293345051|ref|XP_002725926.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 2 [Rattus norvegicus] gi|293356926|ref|XP_002729027.1| PREDICTED: lin-28 homolog B isoform 3 [Rattus norvegicus] Length = 247 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EG+ + DVF+H+S + G +L EG+ V + + Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 85 >gi|222480397|ref|YP_002566634.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222453299|gb|ACM57564.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 64 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 +G + ++N GYGFI S ++ +DVF H V +L EGQ V +D Sbjct: 3 KGKVDFFNDTGGYGFIE---SDDADEDVFFHMEDVGGP---DLEEGQEVEFD 48 >gi|284166114|ref|YP_003404393.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] gi|284015769|gb|ADB61720.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] Length = 65 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++ ++N GYGFI+ E + E DVF H V +L EG+ + +D Q Sbjct: 4 GNVDFFNDTGGYGFISTEDADE---DVFFHMEDVGGP---DLEEGEEIEFDIEQ 51 >gi|81428557|ref|YP_395557.1| cold shock protein CspA family protein [Lactobacillus sakei subsp. sakei 23K] gi|78610199|emb|CAI55248.1| Similar to cold shock protein, CspA family [Lactobacillus sakei subsp. sakei 23K] Length = 68 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW++ KGYGFI E +F+H +A+ G L + V ++ V+ A Sbjct: 1 MERGIVKWFSNAKGYGFINYRDDEE----IFVHFTAIQIDGYKTLDKDDQVLFE-VKEGA 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 RGLQAANVQKI 66 >gi|242022944|ref|XP_002431897.1| calcium-regulated heat stable protein, putative [Pediculus humanus corporis] gi|212517238|gb|EEB19159.1| calcium-regulated heat stable protein, putative [Pediculus humanus corporis] Length = 132 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 + +G++K + +KG+GFIT S +G+D+F+H S + Sbjct: 47 IEKGTVKMFCREKGHGFIT---SNRTGEDIFVHISDI 80 >gi|117621225|ref|YP_857729.1| cold-shock protein, DNA-binding [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562632|gb|ABK39580.1| cold-shock protein, DNA-binding [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 214 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITP-EGSTE-SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M ++G I +N +G+GFI P +G E G ++F+H SA+ S G G+ V+Y + Sbjct: 1 MRYQGRIVRWNEARGFGFIAPDQGDGEPKGAELFVHISALQSDGSLPKI-GERVSYQ-LG 58 Query: 59 NDANGKYSAENLKLV 73 + +GK AE + V Sbjct: 59 SGQDGKPRAEQVFFV 73 >gi|309812365|ref|ZP_07706120.1| cold-shock DNA-binding domain protein [Dermacoccus sp. Ellin185] gi|308433670|gb|EFP57547.1| cold-shock DNA-binding domain protein [Dermacoccus sp. Ellin185] Length = 127 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 9/66 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K+Y+ +KG+GF+ S + G DVF+ SA+ AG+ L G + Y V +G+ Sbjct: 4 GKVKFYSAEKGFGFV----SGDDGVDVFVPASAL-PAGVSQLRGGMRIEYSVV----DGR 54 Query: 65 YSAENL 70 A+ + Sbjct: 55 KGAQAM 60 >gi|145284596|gb|ABP52045.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 26 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 4/30 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KG+GFI +SG+DVF+H Sbjct: 1 GMVKWFNDSKGFGFI----QRDSGEDVFVH 26 >gi|126310761|ref|XP_001378246.1| PREDICTED: similar to lin-28 homolog B (C. elegans), [Monodelphis domestica] Length = 266 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ V + + Sbjct: 48 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLYMEGFRSLKEGEPVEFTF 103 >gi|83814543|ref|YP_446197.1| hypothetical protein SRU_2091 [Salinibacter ruber DSM 13855] gi|294508125|ref|YP_003572183.1| cold shock-like protein [Salinibacter ruber M8] gi|83755937|gb|ABC44050.1| conserved domain protein [Salinibacter ruber DSM 13855] gi|294344453|emb|CBH25231.1| putative cold shock-like protein [Salinibacter ruber M8] Length = 110 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYD 55 ++KW++ KGYGFI + G+DVF+H S + S F L Q V ++ Sbjct: 5 TVKWFDAKKGYGFI---HHPDDGEDVFVHYSNIQSDDDFKTLKSDQHVRFE 52 >gi|254494842|ref|ZP_01051872.2| 'cold-shock' DNA-binding protein [Polaribacter sp. MED152] gi|213690424|gb|EAQ41300.2| 'cold-shock' DNA-binding protein [Polaribacter sp. MED152] Length = 63 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 3/38 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39 +++G++K++N KG+GFIT EG+ + + F+H S + Sbjct: 1 MNKGTVKFFNESKGFGFITEEGTNK---EHFVHVSGLV 35 >gi|116248187|sp|Q45KJ6|LN28B_MOUSE RecName: Full=Protein lin-28 homolog B; Short=Lin-28B Length = 247 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EG+ + DVF+H+S + G +L EG+ V + + Sbjct: 30 GHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 85 >gi|309774677|ref|ZP_07669701.1| cold-shock domain family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917577|gb|EFP63293.1| cold-shock domain family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 86 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 VH G+ W++ +KGYGF+ + S +H + + G L GQ VTY+ ++ + Sbjct: 10 VH-GTCIWFSDEKGYGFLLSDDGVSS----MVHYTDIKEPGFKRLYRGQRVTYEELETE 63 >gi|299771405|ref|YP_003733431.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1] gi|298701493|gb|ADI92058.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1] Length = 97 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 14/72 (19%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ---NDA 61 G +K Y+PDKG+GFI ST G D+F H S F +EG+ + V+ D Sbjct: 8 GKVKQYDPDKGFGFI----STTEG-DIFFHISD------FPASEGEPKRNEKVRFLAADN 56 Query: 62 NGKYSAENLKLV 73 GK+ A ++ + Sbjct: 57 QGKFKAIKIERI 68 >gi|289581794|ref|YP_003480260.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] gi|289531347|gb|ADD05698.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] Length = 64 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++ ++N GYGFI E ++ DDVF H + +L EGQ + ++ Q Sbjct: 3 KGTVDFFNDTGGYGFIETE---DADDDVFFHMEDIGGP---DLEEGQELEFEIEQ 51 >gi|224367842|ref|YP_002602005.1| CspG [Desulfobacterium autotrophicum HRM2] gi|223690558|gb|ACN13841.1| CspG [Desulfobacterium autotrophicum HRM2] Length = 217 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 M+ RG+I +N +KG+GFITP G +F H Sbjct: 1 MLRRGNITLWNDEKGFGFITPNA---GGKQLFFH 31 >gi|149372203|ref|ZP_01891473.1| cold shock protein [unidentified eubacterium SCB49] gi|149354970|gb|EDM43532.1| cold shock protein [unidentified eubacterium SCB49] Length = 63 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G +K++N KG+GFIT EG + D F+H S + + EG V ++ + Sbjct: 1 MNKGIVKFFNDSKGFGFITEEGQEK---DHFVHISGLIDE----VREGDEVEFEL--KEG 51 Query: 62 NGKYSAENLKLV 73 N +A N++++ Sbjct: 52 NKGLNAVNVRVL 63 >gi|86130475|ref|ZP_01049075.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] gi|85819150|gb|EAQ40309.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] Length = 64 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 9/55 (16%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV------ASAGLFNLTEGQ 50 +H+G++K++N KG+GFI E E+ + F+H + + A F L EG+ Sbjct: 1 MHKGTVKFFNETKGFGFINEE---EANQEHFVHVTGLIDEVREGDAVEFELKEGK 52 >gi|269957706|ref|YP_003327495.1| cold-shock DNA-binding domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269306387|gb|ACZ31937.1| cold-shock DNA-binding domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 127 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 4/34 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G +KW++ ++G+GFI + + G +VFLH SA+ Sbjct: 4 GKVKWFDSERGFGFI----AGDDGGEVFLHASAL 33 >gi|297520670|ref|ZP_06939056.1| major cold shock protein [Escherichia coli OP50] Length = 26 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 12/18 (66%), Positives = 16/18 (88%) Query: 5 GSIKWYNPDKGYGFITPE 22 G +KW+N DKG+GFITP+ Sbjct: 7 GIVKWFNADKGFGFITPD 24 >gi|258593069|emb|CBE69380.1| Cold shock protein, DNA binding [NC10 bacterium 'Dutch sediment'] Length = 67 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N K +GFI + + G D F+H S V E V +D Q+D G Sbjct: 2 KGKVKWFNVTKRFGFIVRD---DGGQDAFVHASDVEGGA--TPRENDDVEFDLGQDD-RG 55 Query: 64 KYSAENLKLV 73 + A ++++ Sbjct: 56 RAKAVRVRIL 65 >gi|126734566|ref|ZP_01750312.1| cold shock protein [Roseobacter sp. CCS2] gi|126715121|gb|EBA11986.1| cold shock protein [Roseobacter sp. CCS2] Length = 151 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ +G+GF+ +G D LH++ + G ++ EG V + Y Q+ NG Sbjct: 1 MKWFDAYRGFGFVVIDGIET---DFLLHQNILHGFGRTSIAEGSSVEFAY-QSTENGFKI 56 Query: 67 AENLKLVPKS 76 E + P S Sbjct: 57 IEIFAIAPPS 66 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +KW++P KGYGF+ G E D+F+ + + + L +L G + + + Sbjct: 89 VKWFDPSKGYGFVNAFGCAE---DIFVGAATLRKSMLGDLQSGDALCVQIAETEGR 141 >gi|291395012|ref|XP_002713966.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus] Length = 203 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFITPEG----STESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GF++ + + DVF+H+S + G +L EG+ V + + Sbjct: 36 GICKWFNVRMGFGFLSMTARAGVALDPLVDVFVHQSKLHMEGFRSLKEGEAVEFTF 91 >gi|114615287|ref|XP_510011.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan troglodytes] Length = 379 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 6/63 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG---LFNLTEGQLVTYDYVQNDA 61 G++KW+N GYGFI ++ +DVF+ ++A+ + L ++ +G+ V +D V+ + Sbjct: 117 GTVKWFNVRNGYGFIN---RNDTKEDVFVPQTAIKNNPRKYLRSVGDGETVEFDVVEGEK 173 Query: 62 NGK 64 + + Sbjct: 174 DAE 176 >gi|297519352|ref|ZP_06937738.1| Cold shock-like protein cspC [Escherichia coli OP50] Length = 31 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFL 33 +G +KW+N KG+GFITP + DVF+ Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFV 31 >gi|87307223|ref|ZP_01089368.1| probable cold shock protein scoF [Blastopirellula marina DSM 3645] gi|87289963|gb|EAQ81852.1| probable cold shock protein scoF [Blastopirellula marina DSM 3645] Length = 68 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G IK DKG+GFI T S D+F H S++ +L EGQ V+ YV+ Sbjct: 3 LMPEGKIKRLT-DKGFGFI----DTGSNKDLFFHMSSLEGCRYDDLREGQTVS--YVEGQ 55 Query: 61 ANGKYSAENLKLV 73 AE ++++ Sbjct: 56 GPKGPRAEQVQVI 68 >gi|255531633|ref|YP_003092005.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366] gi|255344617|gb|ACU03943.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366] Length = 63 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 10/60 (16%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFI P +GD ++F+H SA+++ + E V+Y+ V+N G Sbjct: 4 GTVKFFNESKGFGFIIP----SNGDPELFVHASALSAP----VRENDRVSYE-VENGKKG 54 >gi|222479737|ref|YP_002565974.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222452639|gb|ACM56904.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 64 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G + ++N GYGFI + ++ DDVF H V +L EGQ V ++ ++D Sbjct: 4 GKVDFFNDTGGYGFIE---TDDADDDVFFHMEDVGGP---DLEEGQEVEFEIEESD 53 >gi|293609127|ref|ZP_06691430.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829700|gb|EFF88062.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 97 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 16/73 (21%) Query: 5 GSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ---ND 60 G +K YNPDKG+GFI T EG D+F H S F +EG+ + V+ D Sbjct: 8 GWVKQYNPDKGFGFIETTEG------DIFFHISD------FPASEGEPKRNEKVRFLAAD 55 Query: 61 ANGKYSAENLKLV 73 GK+ A ++ V Sbjct: 56 NQGKFKAIKIERV 68 >gi|30089118|emb|CAD27800.1| Y1 protein [Dugesia etrusca] Length = 280 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQND 60 G +KW+N GYGFI ++ +D+F+H++A+ ++ +G+ V +D V+ + Sbjct: 32 GKVKWFNVKSGYGFIN---RNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGE 88 >gi|134101948|ref|YP_001107609.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|291007041|ref|ZP_06565014.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133914571|emb|CAM04684.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 150 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ ++ KGYGFI P+ G+DVFLH S + L G V ++ V + K Sbjct: 4 GTVVRFDGIKGYGFIAPDA---GGEDVFLHASILDEELKEVLRGGMRVEFEAVPGNQGTK 60 Query: 65 YSAENL 70 NL Sbjct: 61 AMTVNL 66 >gi|261822120|ref|YP_003260226.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] gi|261606133|gb|ACX88619.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] Length = 160 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+I + DKG+GFI E+GD+ + H VA+ L + + VT++ N Sbjct: 1 MAMNGTITTWFKDKGFGFI----KDENGDNRYFHVIKVANPDL--IKKDAAVTFEPTTN- 53 Query: 61 ANGKYSAENLKLVPKS 76 N SA +K+VP+S Sbjct: 54 -NKGLSAYAVKVVPES 68 >gi|157093143|gb|ABV22226.1| cold shock protein-like [Karlodinium micrum] gi|157093145|gb|ABV22227.1| cold shock protein-like [Karlodinium micrum] Length = 210 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++G IK + KGYGFIT + G D+F +S V+ L L+ Q T+ D Sbjct: 73 YKGRIKSFVQQKGYGFITCDAL--QGQDIFFMKSDVSERALPILSANQDCTFTLHLGDRG 130 Query: 63 GKYSAENLKLVPKSSN 78 + A+++ LV + N Sbjct: 131 PQ--AKDITLVGAAGN 144 >gi|50120514|ref|YP_049681.1| putative cold-shock protein [Pectobacterium atrosepticum SCRI1043] gi|49611040|emb|CAG74485.1| putative cold-shock protein [Pectobacterium atrosepticum SCRI1043] Length = 160 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+I + DKG+GFI E+GD+ + H VA+ L + + VT++ N Sbjct: 1 MAMNGTITTWFKDKGFGFI----KDENGDNRYFHVIKVANPDL--IKKDAAVTFEPTTN- 53 Query: 61 ANGKYSAENLKLVPKS 76 N SA +K+VP+S Sbjct: 54 -NKGLSAYAVKVVPES 68 >gi|268592402|ref|ZP_06126623.1| putative cold-shock protein [Providencia rettgeri DSM 1131] gi|291312188|gb|EFE52641.1| putative cold-shock protein [Providencia rettgeri DSM 1131] Length = 160 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+I + DKG+GFI E+GD+ + H VA+ L + + VT++ N Sbjct: 1 MAMNGTITTWFEDKGFGFI----KDENGDNRYFHVVKVANPDL--IKKNAAVTFEPTTN- 53 Query: 61 ANGKYSAENLKLVPKS 76 N SA +K++P+S Sbjct: 54 -NKGLSAFAVKVIPES 68 >gi|313674903|ref|YP_004052899.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM 4126] gi|312941601|gb|ADR20791.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM 4126] Length = 63 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFI E + + D F+H S + ++ E V Y+ D Sbjct: 1 MNKGTVKFFNDSKGFGFIIDESTQQ---DYFVHVSGLID----DIRENDEVVYEL--QDG 51 Query: 62 NGKYSAENLKL 72 +A N+KL Sbjct: 52 KKGLNAVNVKL 62 >gi|297469975|ref|XP_602127.4| PREDICTED: cold shock domain protein A short-like [Bos taurus] gi|297493214|ref|XP_002700207.1| PREDICTED: cold shock domain protein A short-like [Bos taurus] gi|296470657|gb|DAA12772.1| cold shock domain protein A short-like [Bos taurus] Length = 370 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 7/60 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQND 60 G++ W+ KGYGFI + E DVF+H +A+ ++ +G+ V +D VQ + Sbjct: 70 GTVVWFKDKKGYGFIRRHDTQE---DVFVHHTAITGETPCKYRGSVDDGETVEFDVVQGE 126 >gi|311748237|ref|ZP_07722022.1| cold shock protein [Algoriphagus sp. PR1] gi|126576729|gb|EAZ80977.1| cold shock protein [Algoriphagus sp. PR1] Length = 63 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 7/51 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++K+YN KG+GFI + E+ D+F+H + + + + VTYD Sbjct: 4 GTVKFYNDAKGFGFIVDD---ETQSDIFVHATGLVD----KVAQNDKVTYD 47 >gi|88855543|ref|ZP_01130207.1| hypothetical protein A20C1_01931 [marine actinobacterium PHSC20C1] gi|88815450|gb|EAR25308.1| hypothetical protein A20C1_01931 [marine actinobacterium PHSC20C1] Length = 246 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+ +N ++G+GFIT ESGD +F H SA T + V++ V++ ++GK Sbjct: 40 GSLASWNDERGFGFIT----LESGDRIFAHISAFPPRDA-RPTLDERVSF-AVEHTSDGK 93 Query: 65 YSAENLK 71 A N++ Sbjct: 94 VRARNIR 100 >gi|73540243|ref|YP_294763.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72117656|gb|AAZ59919.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 195 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36 G++K +N DKG+GFI P + G D+F+H S Sbjct: 14 GTLKSWNKDKGFGFIAP---SNGGRDIFVHIS 42 >gi|188026432|ref|ZP_02962051.2| hypothetical protein PROSTU_04144 [Providencia stuartii ATCC 25827] gi|188019835|gb|EDU57875.1| hypothetical protein PROSTU_04144 [Providencia stuartii ATCC 25827] Length = 174 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+I + DKG+GFI E+GD+ + H VA+ L + + VT++ N Sbjct: 16 MAMNGTITTWFEDKGFGFI----KDENGDNRYFHVIKVANPDL--IKKNAAVTFEPTTN- 68 Query: 61 ANGKYSAENLKLVPKS 76 N SA +K++P+S Sbjct: 69 -NKGLSAYAVKVIPES 83 >gi|157121173|ref|XP_001659860.1| hypothetical protein AaeL_AAEL009235 [Aedes aegypti] gi|108874689|gb|EAT38914.1| conserved hypothetical protein [Aedes aegypti] Length = 159 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +K ++ KG+GFI+P T GDD+F+H S + G + G V+Y Sbjct: 64 IEEGKVKSFSRSKGHGFISP---TAGGDDIFVHISDI--EGEYVPLPGDEVSY 111 >gi|229819345|ref|YP_002880871.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM 12333] gi|229565258|gb|ACQ79109.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM 12333] Length = 127 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 4/36 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40 G +K+++ D+G+GFI + + G +VFLH SA+ + Sbjct: 4 GKVKFFDADRGFGFI----AADDGGEVFLHASALPA 35 >gi|16125636|ref|NP_420200.1| cold-shock domain-contain protein [Caulobacter crescentus CB15] gi|13422744|gb|AAK23368.1| cold-shock domain family protein [Caulobacter crescentus CB15] Length = 64 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +KW+N KGYGF+ + E G D+F+H + GL +L G V + + Sbjct: 1 MKWFNRTKGYGFVIRD--AEPG-DIFVHIETLRRGGLEDLQPGDDVLVRFAR 49 >gi|255037756|ref|YP_003088377.1| cold-shock DNA-binding domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254950512|gb|ACT95212.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM 18053] Length = 64 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G++K++N KGYGFI + ++ D+F+H V G + E V Y+ V+ Sbjct: 4 GTVKFFNEAKGYGFIVED---DTKKDIFVH---VTGLGGLTIRENDQVEYEVVE 51 >gi|320158020|ref|YP_004190398.1| membrane protein [Vibrio vulnificus MO6-24/O] gi|319933332|gb|ADV88195.1| membrane protein [Vibrio vulnificus MO6-24/O] Length = 198 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G I +N +KGYGFI+ G VF H S+V + G + VT++ V D Sbjct: 1 MAIKGQIIEWNDEKGYGFISAIGGEL---KVFFHISSVTNRG-YRPKIKDNVTFN-VAED 55 Query: 61 ANGKYSAENL 70 G+++AEN+ Sbjct: 56 KKGRFNAENV 65 >gi|317491867|ref|ZP_07950302.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920301|gb|EFV41625.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 160 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+I + DKG+GFI E+GD+ + H VA+ L + + VT++ N Sbjct: 1 MAMNGTITTWFKDKGFGFI----KDENGDNRYFHVIKVANPDL--IKKDAAVTFEPTTN- 53 Query: 61 ANGKYSAENLKLVPKS 76 N SA +K++P+S Sbjct: 54 -NKGLSAYAVKVIPES 68 >gi|332293443|ref|YP_004432052.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171529|gb|AEE20784.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 64 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 9/55 (16%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV------ASAGLFNLTEGQ 50 +H+G++K++N KG+GFI E E+ + F+H + + A F L EG+ Sbjct: 1 MHKGTVKFFNDTKGFGFINEE---EANQEHFVHVTGLIDEVREGDAVEFELKEGK 52 >gi|312891332|ref|ZP_07750850.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] gi|311296193|gb|EFQ73344.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] Length = 63 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 13/74 (17%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLFN-LTEGQLVTYDYVQN 59 + G++K++N KG+GFI P +GD ++F+H S+GL + + E V Y+ V+ Sbjct: 1 MQSGTVKFFNETKGFGFIVP----SNGDSEIFVH-----SSGLIDQIRENDSVNYE-VER 50 Query: 60 DANGKYSAENLKLV 73 G ++A N+K+V Sbjct: 51 GKKG-FNAVNVKVV 63 >gi|37675872|ref|NP_936268.1| hypothetical protein VVA0212 [Vibrio vulnificus YJ016] gi|37200411|dbj|BAC96238.1| predicted membrane protein [Vibrio vulnificus YJ016] Length = 198 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G I +N +KGYGFI+ G VF H S+V + G + VT++ V D Sbjct: 1 MAIKGQIIEWNDEKGYGFISAIGGEL---KVFFHISSVTNRG-YRPKIKDNVTFN-VAED 55 Query: 61 ANGKYSAENL 70 G+++AEN+ Sbjct: 56 KKGRFNAENV 65 >gi|167847488|ref|ZP_02472996.1| cold-shock domain family protein [Burkholderia pseudomallei B7210] Length = 78 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 +GFITPEG G+D+F H S + G L E Q V ++ V+ G A N+K Sbjct: 26 FGFITPEGG---GEDLFAHFSEIRVDGFKTLQENQKVEFE-VKTGPKG-LQAANIK 76 >gi|326381637|ref|ZP_08203331.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] gi|326199884|gb|EGD57064.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] Length = 161 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 10/78 (12%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN--LTEGQLVTYDYVQ 58 M G + ++ ++G+GF+ P E GDDVFLH + G+ L G V +D Sbjct: 1 MAVNGKVVHFDTNRGFGFLAP---AEGGDDVFLH---INDVGIDESLLRPGAEVEFDVES 54 Query: 59 NDANGKYSAENLKLVPKS 76 D K A N+K+ ++ Sbjct: 55 TDRGAK--ALNVKVTKEA 70 >gi|27367741|ref|NP_763268.1| membrane protein [Vibrio vulnificus CMCP6] gi|27359314|gb|AAO08258.1| membrane protein [Vibrio vulnificus CMCP6] Length = 198 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G I +N +KGYGFI+ G VF H S+V + G + VT++ V D Sbjct: 1 MAIKGQIIEWNDEKGYGFISAIGGEL---KVFFHISSVTNRG-YRPKIKDNVTFN-VAED 55 Query: 61 ANGKYSAENL 70 G+++AEN+ Sbjct: 56 KKGRFNAENV 65 >gi|292656120|ref|YP_003536017.1| cold shock protein [Haloferax volcanii DS2] gi|291371726|gb|ADE03953.1| cold shock protein [Haloferax volcanii DS2] Length = 64 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 +G++ ++N GYGFI+ + ++ DDVF H + +L EG V +D Q Sbjct: 3 KGNVDFFNDTGGYGFIS---TDDADDDVFFHMEDIGGP---DLEEGTDVEFDIEQ 51 >gi|110638737|ref|YP_678946.1| cold-shock DNA-binding protein family protein [Cytophaga hutchinsonii ATCC 33406] gi|110281418|gb|ABG59604.1| cold-shock DNA-binding protein family [Cytophaga hutchinsonii ATCC 33406] Length = 63 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K++N KG+GFI + ESG + F+H S + + E VT++ + Sbjct: 1 MNNGTVKFFNNSKGFGFIIEK---ESGKEYFVHVSGLVDE----IRENDEVTFELEKGKK 53 Query: 62 NGKYSAENLKLV 73 +A N+KLV Sbjct: 54 G--LNAVNVKLV 63 >gi|41056167|ref|NP_956856.1| calcium-regulated heat stable protein 1 [Danio rerio] gi|33989487|gb|AAH56576.1| Calcium regulated heat stable protein 1 [Danio rerio] Length = 155 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 V G K ++ KG+GFITP ++ G+D+F+H S + G + EG V Y Sbjct: 70 VFSGVCKCFSRSKGHGFITP---SDGGNDIFVHISDI--DGEYVPVEGDEVCYKIC 120 >gi|89514265|gb|ABD74995.1| putative cold shock transcription regulator protein [Sinorhizobium kostiense] Length = 29 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFL 33 + G++K++N DKG+GFI PE G D+F+ Sbjct: 1 METGTVKFFNTDKGFGFIKPE---NGGADIFV 29 >gi|327280107|ref|XP_003224795.1| PREDICTED: calcium-regulated heat stable protein 1-like [Anolis carolinensis] Length = 149 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 ++G K ++ KG+GFITPE E G DVF+H S + G + G +TY Sbjct: 62 TYKGVCKCFSRAKGHGFITPE---EGGLDVFVHISDI--EGEYVPVAGDEMTY 109 >gi|145284586|gb|ABP52040.1| cold shock protein [Psychrobacter sp. BJ3] gi|145284602|gb|ABP52048.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 27 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G++KW+N KG+GFI + G DVF+H Sbjct: 1 GTVKWFNEAKGFGFIAQD---NGGQDVFVH 27 >gi|260808771|ref|XP_002599180.1| hypothetical protein BRAFLDRAFT_197924 [Branchiostoma floridae] gi|229284457|gb|EEN55192.1| hypothetical protein BRAFLDRAFT_197924 [Branchiostoma floridae] Length = 121 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG +K + KG+GFI P + DD+F+H S + G + L +G VTY Sbjct: 45 RGIVKNFCRQKGHGFIKPH---DGSDDIFVHISDI--DGEYVLKDGDEVTY 90 >gi|158294527|ref|XP_315660.4| AGAP005641-PA [Anopheles gambiae str. PEST] gi|157015604|gb|EAA11357.4| AGAP005641-PA [Anopheles gambiae str. PEST] Length = 157 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 + G +K ++ KG+GFITP GDD+F+H S + Sbjct: 67 IEEGKVKSFSRSKGHGFITPNA---GGDDIFVHISDI 100 >gi|116492939|ref|YP_804674.1| cold-shock DNA-binding protein family protein [Pediococcus pentosaceus ATCC 25745] gi|116103089|gb|ABJ68232.1| cold-shock DNA-binding protein family [Pediococcus pentosaceus ATCC 25745] Length = 69 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 + G+++ ++ +KGYGFI T SGD VF H + + S L G+ V Sbjct: 1 METGTVESFDKEKGYGFI----ETASGDKVFAHYTVIQSEDYKTLEVGEKV 47 >gi|308176351|ref|YP_003915757.1| cold shock protein [Arthrobacter arilaitensis Re117] gi|307743814|emb|CBT74786.1| putative cold shock protein [Arthrobacter arilaitensis Re117] Length = 127 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY KG+GFIT E G +++++ +A+ G+ +L G + + A G+ Sbjct: 4 GKVKWYEKAKGFGFIT----AEDGKEIYVNAAALPE-GVHDLRPGTRLEFGV----AEGR 54 Query: 65 YSAENLKL 72 + L L Sbjct: 55 RGPQALSL 62 >gi|283783195|ref|YP_003373949.1| cold-shock DNA-binding domain protein [Gardnerella vaginalis 409-05] gi|283441802|gb|ADB14268.1| cold-shock DNA-binding domain protein [Gardnerella vaginalis 409-05] Length = 129 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G ++WY+ KGYGFI + G DVFL +A+ + +L +G V + ++ Sbjct: 4 GRVRWYDTQKGYGFIV----GDDGKDVFLPAAAL-PVTVKSLHKGTRVEFSVIE 52 >gi|308498439|ref|XP_003111406.1| hypothetical protein CRE_03641 [Caenorhabditis remanei] gi|308240954|gb|EFO84906.1| hypothetical protein CRE_03641 [Caenorhabditis remanei] Length = 264 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 9/69 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KWY+ + YGFI+ + + DVF+H++A+A + L L + + V +D V+ Sbjct: 63 QGKVKWYSVLRRYGFISRD---DGEKDVFVHQTAIAKSDTEKFYLRTLADEEEVLFDLVE 119 Query: 59 NDANGKYSA 67 NG +A Sbjct: 120 GK-NGPEAA 127 >gi|227114570|ref|ZP_03828226.1| putative cold-shock protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 160 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+I + DKG+GFI E+GD+ + H VA+ L + + VT++ N Sbjct: 1 MAMNGTITTWFKDKGFGFI----KDENGDNRYFHVIKVANPDL--IKKDAEVTFEPTTN- 53 Query: 61 ANGKYSAENLKLVPKS 76 N SA +K+VP+S Sbjct: 54 -NKGLSAYAVKVVPES 68 >gi|82702034|ref|YP_411600.1| putative sigma 54 modulation protein/ribosomal protein S30EA [Nitrosospira multiformis ATCC 25196] gi|82410099|gb|ABB74208.1| putative sigma 54 modulation protein/ribosomal protein S30EA [Nitrosospira multiformis ATCC 25196] Length = 195 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G + P++GYGF+ T SG +++ HR +A+ L EG V + Sbjct: 114 GKVVRLMPEEGYGFV----ETSSGQELYFHRENLANNNFEQLEEGSEVQF 159 >gi|313225295|emb|CBY06769.1| unnamed protein product [Oikopleura dioica] Length = 834 Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI + +VF H + + + +L G +V + + N +G A ++LV K Sbjct: 676 YGFINYQEGEGDSKNVFFHATNLIEVSIADLGVGDIVKFSVIHNKRSGNTCAAGIRLVKK 735 Query: 76 SS 77 ++ Sbjct: 736 AA 737 >gi|297243561|ref|ZP_06927492.1| cold shock protein [Gardnerella vaginalis AMD] gi|296888312|gb|EFH27053.1| cold shock protein [Gardnerella vaginalis AMD] Length = 129 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 G ++WY+ KGYGFI + G DVFL +A+ + L +G V + ++ Sbjct: 4 GRVRWYDTQKGYGFIV----GDDGKDVFLPAAAL-PVTVKTLHKGTRVEFSVIE 52 >gi|222624666|gb|EEE58798.1| hypothetical protein OsJ_10341 [Oryza sativa Japonica Group] Length = 233 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 27/35 (77%), Gaps = 3/35 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 +G++K ++ G+GFITP+ + G+D+F+H+S++ Sbjct: 7 KGTVKGFDATNGFGFITPD---DDGEDLFIHQSSL 38 >gi|26344984|dbj|BAC36141.1| unnamed protein product [Mus musculus] Length = 361 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 7/55 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYD 55 G++KW+N GYGFI ++ +D F+H++ + L ++ +G+ V +D Sbjct: 85 GTVKWFNVRNGYGFIN---RNDTKEDAFVHQTVIKKNNPRKYLRSVGDGETVEFD 136 >gi|47216902|emb|CAG02074.1| unnamed protein product [Tetraodon nigroviridis] Length = 151 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V G K ++ KG+GFITP ++ G D+F+H S + G + EG V+Y Sbjct: 67 VFTGVCKCFSRSKGHGFITP---SDGGKDIFVHISDI--EGEYVPIEGDEVSY 114 >gi|85703578|ref|ZP_01034682.1| cold shock DNA-binding domain protein [Roseovarius sp. 217] gi|85672506|gb|EAQ27363.1| cold shock DNA-binding domain protein [Roseovarius sp. 217] Length = 151 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ KG+GF G E DVF+H + +GL ++ G+ + + + G+ + Sbjct: 82 VKWFDKGKGFGFANTFGREE---DVFVHVEVLRRSGLADVQPGEALAIRVI-DGKRGRMA 137 Query: 67 AE 68 E Sbjct: 138 TE 139 >gi|195376475|ref|XP_002047022.1| GJ13199 [Drosophila virilis] gi|194154180|gb|EDW69364.1| GJ13199 [Drosophila virilis] Length = 142 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G +K ++ KG+GFITP G G+DVF H S + Sbjct: 57 GVVKSFSRTKGHGFITPHG---GGEDVFCHVSDI 87 >gi|223992615|ref|XP_002285991.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977306|gb|EED95632.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 50 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 3/38 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42 G++KWYN ++G+GFI + + G D+++H + + G Sbjct: 3 GTVKWYNAERGFGFIAID---DGGADMYVHATGLTFDG 37 >gi|224070003|ref|XP_002194726.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 152 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 +++G K + KG+GFITP + G D+F+H S + G + G VTY Sbjct: 67 IYKGVCKCFCRSKGHGFITP---ADGGPDIFVHISDI--EGEYVPVAGDEVTYKMC 117 >gi|330876787|gb|EGH10936.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 24 Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 17/18 (94%) Query: 5 GSIKWYNPDKGYGFITPE 22 G++KW+N +KG+GFITP+ Sbjct: 7 GTVKWFNDEKGFGFITPQ 24 >gi|240170464|ref|ZP_04749123.1| cold-shock DNA-binding protein family protein [Mycobacterium kansasii ATCC 12478] Length = 99 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 V G I W++ ++G+GF+ P + DVF+ S + + EGQ V+Y Sbjct: 33 VSYGVINWFDDERGFGFVHP---ADGDRDVFIDSSEIVDWPAGGVHEGQHVSY 82 >gi|315126645|ref|YP_004068648.1| cold shock DNA-binding domain-containing protein [Pseudoalteromonas sp. SM9913] gi|315015159|gb|ADT68497.1| cold shock DNA-binding domain-containing protein [Pseudoalteromonas sp. SM9913] Length = 192 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G +K +N +KG+GFI ST D F+H S++ G ++ ++ V D Sbjct: 1 MNKGLLKSWNDEKGFGFIK---STTLQHDTFIHISSLKHMSR-KPKVGDIIYFE-VATDP 55 Query: 62 NGKYSAENLKL 72 NGK A N ++ Sbjct: 56 NGKTKAVNCRI 66 >gi|188587465|ref|YP_001919010.1| transcription termination factor Rho [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352152|gb|ACB86422.1| transcription termination factor Rho [Natranaerobius thermophilus JW/NM-WN-LF] Length = 414 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 PD GYGF+ P+G T +D+++ S + F L G LV+ N KY A Sbjct: 59 PD-GYGFLRPDGYTPGSNDIYISASQIKR---FGLKTGDLVSGKVRPPKDNEKYMA 110 >gi|145284584|gb|ABP52039.1| cold shock protein [Psychrobacter sp. BJ3] Length = 27 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KG+GFI + G DVF+H Sbjct: 1 GQVKWFNEAKGFGFIAQD---NGGQDVFVH 27 >gi|298209155|ref|YP_003717334.1| cold shock protein, putative DNA-binding protein [Croceibacter atlanticus HTCC2559] gi|83849082|gb|EAP86951.1| cold shock protein, putative DNA-binding protein [Croceibacter atlanticus HTCC2559] Length = 63 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 7/51 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G +K++N KG+GFIT +E+ ++ F+H S + ++EG V +D Sbjct: 4 GRVKFFNDTKGFGFITD---SETSEEYFVHVSGLID----RISEGDHVAFD 47 >gi|212711744|ref|ZP_03319872.1| hypothetical protein PROVALCAL_02819 [Providencia alcalifaciens DSM 30120] gi|212685846|gb|EEB45374.1| hypothetical protein PROVALCAL_02819 [Providencia alcalifaciens DSM 30120] Length = 160 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+I + DKG+GF+ E+GD+ + H VA+ L + +G VT++ N N Sbjct: 3 GTITTWFEDKGFGFL----KDENGDNRYFHVIKVANPDL--IKKGAEVTFEPTTN--NKG 54 Query: 65 YSAENLKLVPKS 76 SA +K++P+S Sbjct: 55 LSAFAVKVIPES 66 >gi|332306019|ref|YP_004433870.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173348|gb|AEE22602.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 236 Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G I +N DKG+GF+ P G G+ F+H A + +G ++ Y+ V+ D Sbjct: 1 MRFQGKIFNWNDDKGFGFVEPNG---GGERAFVHIKAFNPRSRRPI-DGDIIIYELVRED 56 Query: 61 ANGKYSAENLKL 72 N + A N++ Sbjct: 57 -NHRAKAINIQF 67 >gi|157376410|ref|YP_001475010.1| hypothetical protein Ssed_3278 [Shewanella sediminis HAW-EB3] gi|157318784|gb|ABV37882.1| hypothetical protein Ssed_3278 [Shewanella sediminis HAW-EB3] Length = 274 Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 4 RGSIKWYNPDKGYGFITPE--GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G++ + DKG+GFI PE T+S D+F+H S + L EG + + +++ Sbjct: 7 KGTLVRWKDDKGFGFIEPETGSGTDSHTDIFIHVSQLRHMSRRPL-EGDTIFFQ-IEHKP 64 Query: 62 NGKYSAENLKL 72 GK +A ++ Sbjct: 65 GGKLNAIEARI 75 >gi|224134074|ref|XP_002327749.1| predicted protein [Populus trichocarpa] gi|222836834|gb|EEE75227.1| predicted protein [Populus trichocarpa] Length = 235 Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 8/65 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGD-DVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDAN 62 G + ++ KG+GFI P ++GD D+F+H SA+ S G + L E +V + + ND Sbjct: 16 GRVVRFSDKKGFGFIKP----DAGDKDLFVHHSAIKSDGGYRTLYEDDVVEFTILLND-- 69 Query: 63 GKYSA 67 KY A Sbjct: 70 DKYQA 74 >gi|194216294|ref|XP_001503975.2| PREDICTED: similar to lin-28 homolog B (C. elegans) isoform 2 [Equus caballus] Length = 257 Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G KW+N G+GFI+ EG + DVF+H+S + G +L EG+ V + + Sbjct: 39 GHCKWFNVRMGFGFISMISREGRPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTF 94 >gi|145284594|gb|ABP52044.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 27 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KG+GFI + G DVF+H Sbjct: 1 GKVKWFNEAKGFGFIAQD---NGGQDVFVH 27 >gi|91094659|ref|XP_972255.1| PREDICTED: similar to CG9705 CG9705-PA [Tribolium castaneum] gi|270016464|gb|EFA12910.1| hypothetical protein TcasGA2_TC006980 [Tribolium castaneum] Length = 121 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G IK + +KG+GFITPE +E D+F+H S + Sbjct: 44 GEIKSFCREKGHGFITPEDGSE---DIFVHISDI 74 >gi|268566689|ref|XP_002639788.1| Hypothetical protein CBG02238 [Caenorhabditis briggsae] gi|187037584|emb|CAP23334.1| hypothetical protein CBG_02238 [Caenorhabditis briggsae AF16] Length = 263 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 8/59 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYV 57 +G +KWY+ + YGFI+ + DVF+H++A+A + L L + + V +D V Sbjct: 62 QGKVKWYSVLRRYGFIS---RNDGEKDVFVHQTAIAKSLTEKFYLRTLGDEEEVLFDLV 117 >gi|124008225|ref|ZP_01692922.1| conserved domain protein [Microscilla marina ATCC 23134] gi|123986324|gb|EAY26146.1| conserved domain protein [Microscilla marina ATCC 23134] Length = 64 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 7/51 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++K++N KG+GFIT +GS + + F H S + ++ EG V ++ Sbjct: 4 GTVKFFNESKGFGFITEDGSNK---EYFTHVSGLVD----DIREGDEVEFE 47 >gi|28493015|ref|NP_787176.1| cold shock protein B [Tropheryma whipplei str. Twist] gi|28572227|ref|NP_789007.1| cold shock protein B [Tropheryma whipplei TW08/27] gi|28410358|emb|CAD66744.1| cold shock protein B [Tropheryma whipplei TW08/27] gi|28476055|gb|AAO44145.1| cold shock protein B [Tropheryma whipplei str. Twist] Length = 125 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 9/68 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++++YN ++G+GF+ ++ G+ VFL A+ G+ +L+ G V Y A GK Sbjct: 4 GTVRFYNKERGFGFVV----SDDGESVFLPAKALPD-GVSDLSPGTRVDY----GAALGK 54 Query: 65 YSAENLKL 72 ++ L L Sbjct: 55 KGSQVLSL 62 Searching..................................................done Results from round 2 >gi|254780913|ref|YP_003065326.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040590|gb|ACT57386.1| cold shock protein [Candidatus Liberibacter asiaticus str. psy62] Length = 78 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 78/78 (100%), Positives = 78/78 (100%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND Sbjct: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 Query: 61 ANGKYSAENLKLVPKSSN 78 ANGKYSAENLKLVPKSSN Sbjct: 61 ANGKYSAENLKLVPKSSN 78 >gi|237815887|ref|ZP_04594884.1| cold-shock family protein [Brucella abortus str. 2308 A] gi|237789185|gb|EEP63396.1| cold-shock family protein [Brucella abortus str. 2308 A] Length = 110 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ Sbjct: 42 MATGTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 98 Query: 62 NGKYSAENL 70 +G+ SA+NL Sbjct: 99 SGRSSADNL 107 >gi|239832368|ref|ZP_04680697.1| cold-shock family protein [Ochrobactrum intermedium LMG 3301] gi|239824635|gb|EEQ96203.1| cold-shock family protein [Ochrobactrum intermedium LMG 3301] Length = 110 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ Sbjct: 42 MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLATLDEGQKVSYEIVQDRR 98 Query: 62 NGKYSAENL 70 +G+ SA+NL Sbjct: 99 SGRSSADNL 107 >gi|82700304|ref|YP_414878.1| cold shock DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|297248768|ref|ZP_06932486.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv. 5 str. B3196] gi|82616405|emb|CAJ11468.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus 2308] gi|297175937|gb|EFH35284.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv. 5 str. B3196] Length = 101 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ Sbjct: 33 MATGTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 89 Query: 62 NGKYSAENL 70 +G+ SA+NL Sbjct: 90 SGRSSADNL 98 >gi|17986801|ref|NP_539435.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M] gi|17982433|gb|AAL51699.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M] Length = 101 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ Sbjct: 33 MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 89 Query: 62 NGKYSAENL 70 +G+ SA+NL Sbjct: 90 SGRSSADNL 98 >gi|148559048|ref|YP_001259374.1| cold-shock family protein [Brucella ovis ATCC 25840] gi|148370305|gb|ABQ60284.1| cold-shock family protein [Brucella ovis ATCC 25840] Length = 105 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 3/66 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ Sbjct: 42 MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 98 Query: 62 NGKYSA 67 +G+ SA Sbjct: 99 SGRSSA 104 >gi|158424300|ref|YP_001525592.1| cold shock DNA-binding domain-containing protein [Azorhizobium caulinodans ORS 571] gi|158331189|dbj|BAF88674.1| cold-shock DNA-binding domain [Azorhizobium caulinodans ORS 571] Length = 117 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 3/73 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP+KG+GFI P+ + G D F+H SAV AGL L EGQ V YD V + Sbjct: 48 MTTGTVKWFNPEKGFGFIAPD---DGGADAFVHISAVERAGLPPLREGQKVNYDLVADKR 104 Query: 62 NGKYSAENLKLVP 74 +GK SA NL LVP Sbjct: 105 SGKSSASNLTLVP 117 >gi|332715879|ref|YP_004443345.1| cold shock-like protein cspA [Agrobacterium sp. H13-3] gi|325062564|gb|ADY66254.1| cold shock-like protein cspA [Agrobacterium sp. H13-3] Length = 69 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ G DVF+H SAV AGL +L +GQ +TYD VQ+ Sbjct: 1 MNTGTVKWFNATKGFGFIQPD---NGGTDVFVHISAVERAGLRSLNDGQKITYDIVQDRK 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKSSADNLR 67 >gi|254702210|ref|ZP_05164038.1| cold shock protein CSPA [Brucella suis bv. 5 str. 513] gi|261752785|ref|ZP_05996494.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261742538|gb|EEY30464.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 5 str. 513] Length = 69 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ Sbjct: 1 MATGTVKWFNATKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 57 Query: 62 NGKYSAENL 70 +G+ SA+NL Sbjct: 58 SGRSSADNL 66 >gi|159185613|ref|NP_357478.2| cold shock protein [Agrobacterium tumefaciens str. C58] gi|159140747|gb|AAK90263.2| cold shock protein [Agrobacterium tumefaciens str. C58] Length = 69 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ G DVF+H SAV AG+ +L +GQ ++Y+ VQ+ Sbjct: 1 MNTGTVKWFNATKGFGFIQPD---NGGTDVFVHISAVERAGMRSLNDGQKISYEIVQDRR 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKSSADNLQ 67 >gi|227818999|ref|YP_002822970.1| cold shock protein Y4CH [Sinorhizobium fredii NGR234] gi|227337998|gb|ACP22217.1| probable cold shock protein Y4CH [Sinorhizobium fredii NGR234] Length = 69 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + DVF+H SAV AGL L EGQ V+++ Q+ Sbjct: 1 MASGTVKWFNSTKGFGFIAPD---DGSPDVFVHISAVERAGLSTLKEGQKVSFEATQDRR 57 Query: 62 NGKYSAENLKLV 73 +GK SA+NL+ + Sbjct: 58 SGKTSADNLRAL 69 >gi|62290382|ref|YP_222175.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|189024609|ref|YP_001935377.1| Cold-shock DNA-binding domain protein [Brucella abortus S19] gi|254689680|ref|ZP_05152934.1| cold shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|254694170|ref|ZP_05155998.1| cold shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|254697823|ref|ZP_05159651.1| cold shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730712|ref|ZP_05189290.1| cold shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|256257931|ref|ZP_05463467.1| cold shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260546920|ref|ZP_05822659.1| cold-shock DNA-binding domain-containing protein [Brucella abortus NCTC 8038] gi|260755213|ref|ZP_05867561.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260758433|ref|ZP_05870781.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260762259|ref|ZP_05874602.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|261214476|ref|ZP_05928757.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|62196514|gb|AAX74814.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|189020181|gb|ACD72903.1| Cold-shock DNA-binding domain protein [Brucella abortus S19] gi|260095970|gb|EEW79847.1| cold-shock DNA-binding domain-containing protein [Brucella abortus NCTC 8038] gi|260668751|gb|EEX55691.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672691|gb|EEX59512.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675321|gb|EEX62142.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260916083|gb|EEX82944.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 69 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ Sbjct: 1 MATGTVKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 57 Query: 62 NGKYSAENL 70 +G+ SA+NL Sbjct: 58 SGRSSADNL 66 >gi|23502361|ref|NP_698488.1| cold-shock family protein [Brucella suis 1330] gi|161619440|ref|YP_001593327.1| hypothetical protein BCAN_A1530 [Brucella canis ATCC 23365] gi|163843747|ref|YP_001628151.1| hypothetical protein BSUIS_A1549 [Brucella suis ATCC 23445] gi|225627936|ref|ZP_03785972.1| cold-shock family protein [Brucella ceti str. Cudo] gi|225852973|ref|YP_002733206.1| hypothetical protein BMEA_A1545 [Brucella melitensis ATCC 23457] gi|254704745|ref|ZP_05166573.1| cold shock protein CSPA [Brucella suis bv. 3 str. 686] gi|254708158|ref|ZP_05169986.1| cold shock protein CSPA [Brucella pinnipedialis M163/99/10] gi|254710530|ref|ZP_05172341.1| cold shock protein CSPA [Brucella pinnipedialis B2/94] gi|254714712|ref|ZP_05176523.1| cold shock protein CSPA [Brucella ceti M644/93/1] gi|254717773|ref|ZP_05179584.1| cold shock protein CSPA [Brucella ceti M13/05/1] gi|254719531|ref|ZP_05181342.1| cold shock protein CSPA [Brucella sp. 83/13] gi|256032023|ref|ZP_05445637.1| cold shock protein CSPA [Brucella pinnipedialis M292/94/1] gi|256045115|ref|ZP_05448016.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. Rev.1] gi|256061545|ref|ZP_05451687.1| cold shock protein CSPA [Brucella neotomae 5K33] gi|256160221|ref|ZP_05457915.1| cold shock protein CSPA [Brucella ceti M490/95/1] gi|256255427|ref|ZP_05460963.1| cold shock protein CSPA [Brucella ceti B1/94] gi|256369909|ref|YP_003107420.1| cold-shock family protein [Brucella microti CCM 4915] gi|260169160|ref|ZP_05755971.1| cold shock protein CSPA [Brucella sp. F5/99] gi|260565284|ref|ZP_05835768.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260566008|ref|ZP_05836478.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|261219622|ref|ZP_05933903.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M13/05/1] gi|261315666|ref|ZP_05954863.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261322510|ref|ZP_05961707.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M644/93/1] gi|261325555|ref|ZP_05964752.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae 5K33] gi|261755443|ref|ZP_05999152.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|265989135|ref|ZP_06101692.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265991548|ref|ZP_06104105.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265998596|ref|ZP_06111153.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M490/95/1] gi|306838469|ref|ZP_07471310.1| cold-shock family protein [Brucella sp. NF 2653] gi|306843158|ref|ZP_07475777.1| cold-shock family protein [Brucella sp. BO2] gi|306844496|ref|ZP_07477085.1| cold-shock family protein [Brucella sp. BO1] gi|23348343|gb|AAN30403.1| cold-shock family protein [Brucella suis 1330] gi|161336251|gb|ABX62556.1| Hypothetical protein BCAN_A1530 [Brucella canis ATCC 23365] gi|163674470|gb|ABY38581.1| Hypothetical protein BSUIS_A1549 [Brucella suis ATCC 23445] gi|225617099|gb|EEH14145.1| cold-shock family protein [Brucella ceti str. Cudo] gi|225641338|gb|ACO01252.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|256000072|gb|ACU48471.1| cold-shock family protein [Brucella microti CCM 4915] gi|260151352|gb|EEW86446.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260155526|gb|EEW90606.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|260924711|gb|EEX91279.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M13/05/1] gi|261295200|gb|EEX98696.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M644/93/1] gi|261301535|gb|EEY05032.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae 5K33] gi|261304692|gb|EEY08189.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261745196|gb|EEY33122.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|262553220|gb|EEZ09054.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M490/95/1] gi|263002332|gb|EEZ14907.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|264661332|gb|EEZ31593.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|306275107|gb|EFM56863.1| cold-shock family protein [Brucella sp. BO1] gi|306286653|gb|EFM58214.1| cold-shock family protein [Brucella sp. BO2] gi|306406433|gb|EFM62671.1| cold-shock family protein [Brucella sp. NF 2653] Length = 69 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ Sbjct: 1 MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 57 Query: 62 NGKYSAENL 70 +G+ SA+NL Sbjct: 58 SGRSSADNL 66 >gi|153009006|ref|YP_001370221.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151560894|gb|ABS14392.1| putative cold-shock DNA-binding domain protein [Ochrobactrum anthropi ATCC 49188] Length = 69 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ Sbjct: 1 MATGTVKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLATLDEGQKVSYEIVQDRR 57 Query: 62 NGKYSAENL 70 +G+ SA+NL Sbjct: 58 SGRSSADNL 66 >gi|329114551|ref|ZP_08243310.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001] gi|326696031|gb|EGE47713.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001] Length = 82 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KGYGFI P+ + G DVF+H +AV +AGL L +GQ V++D V+ Sbjct: 15 LMPTGTVKWFNATKGYGFIAPD---DGGKDVFVHITAVQAAGLRGLNDGQKVSFDLVEE- 70 Query: 61 ANGKYSAENLKL 72 GK +A NLK+ Sbjct: 71 -RGKQAATNLKV 81 >gi|27379706|ref|NP_771235.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27352858|dbj|BAC49860.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 75 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ + G DVF+H SAV AG+ L EGQ V+++ V + Sbjct: 7 MNTGTVKWFNGQKGFGFIQPD---QGGQDVFVHISAVERAGMSTLNEGQKVSFEIVADRR 63 Query: 62 NGKYSAENLKLV 73 GK +AENL+ V Sbjct: 64 TGKSAAENLRAV 75 >gi|315498658|ref|YP_004087462.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] gi|315416670|gb|ADU13311.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] Length = 69 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 50/71 (70%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G+DVF+H SAV +GL L EGQ VT++ ++ Sbjct: 1 MSTGTVKWFNGTKGYGFIQPD---DGGNDVFVHISAVERSGLRGLNEGQKVTFELARDKR 57 Query: 62 NGKYSAENLKL 72 +GK SAENL++ Sbjct: 58 SGKMSAENLQV 68 >gi|227819992|ref|YP_002823963.1| cold shock protein CspA [Sinorhizobium fredii NGR234] gi|36958641|gb|AAQ87109.1| Cold shock protein cspA [Sinorhizobium fredii NGR234] gi|227338991|gb|ACP23210.1| cold shock protein CspA [Sinorhizobium fredii NGR234] Length = 69 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + DVF+H SAV AGL +L EGQ VTYD V+++ Sbjct: 1 MSSGTVKWFNSTKGFGFIQPD---DGSTDVFVHISAVERAGLRSLVEGQKVTYDIVRDNR 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKSSADNLR 67 >gi|86748914|ref|YP_485410.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris HaA2] gi|91977978|ref|YP_570637.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris BisB5] gi|148258227|ref|YP_001242812.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp. BTAi1] gi|192292560|ref|YP_001993165.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] gi|86571942|gb|ABD06499.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris HaA2] gi|91684434|gb|ABE40736.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB5] gi|146410400|gb|ABQ38906.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1] gi|192286309|gb|ACF02690.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] Length = 70 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + Sbjct: 1 MSMGTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKSSADNLR 67 >gi|146338131|ref|YP_001203179.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278] gi|146190937|emb|CAL74942.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278] Length = 70 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + Sbjct: 1 MSMGTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKSSADNLR 67 >gi|298290653|ref|YP_003692592.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296927164|gb|ADH87973.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 69 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ DVF+H SAV AGL L EGQ V+Y+ + Sbjct: 1 MATGTVKWFNSQKGYGFIQPDA---GSSDVFVHISAVERAGLSTLNEGQKVSYEVEADRR 57 Query: 62 NGKYSAENLKLV 73 GK SA NL+ + Sbjct: 58 TGKSSAANLRAL 69 >gi|209966586|ref|YP_002299501.1| hypothetical protein RC1_3328 [Rhodospirillum centenum SW] gi|209960052|gb|ACJ00689.1| conserved domain protein [Rhodospirillum centenum SW] Length = 69 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE G DVF+H SAV AGL L+EGQ V+Y+ ++ Sbjct: 1 MPVGTVKWFNSTKGYGFIQPE---NGGADVFVHISAVERAGLSTLSEGQRVSYEEQRDPR 57 Query: 62 NGKYSAENLK 71 GK SAENLK Sbjct: 58 RGKTSAENLK 67 >gi|15965864|ref|NP_386217.1| cold shock transcription regulator protein [Sinorhizobium meliloti 1021] gi|150397206|ref|YP_001327673.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|307309620|ref|ZP_07589273.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307321759|ref|ZP_07601147.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|15075133|emb|CAC46690.1| Probable cold shock transcription regulator [Sinorhizobium meliloti 1021] gi|150028721|gb|ABR60838.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] gi|306892581|gb|EFN23379.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306899955|gb|EFN30577.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 69 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + DVF+H SAV AGL L +GQ V+++ Q+ Sbjct: 1 MASGTVKWFNSTKGFGFIQPD---DGAADVFVHISAVERAGLSTLKDGQKVSFELTQDRR 57 Query: 62 NGKYSAENLKLV 73 +GK SA+NL+ + Sbjct: 58 SGKTSADNLRAL 69 >gi|207724747|ref|YP_002255144.1| hypothetical transcription regulator protein [Ralstonia solanacearum MolK2] gi|206589970|emb|CAQ36931.1| hypothetical transcription regulator protein [Ralstonia solanacearum MolK2] Length = 131 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ Q Sbjct: 64 IMATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQG- 119 Query: 61 ANGKYSAENLK 71 GK A N++ Sbjct: 120 PKGKQ-ASNIQ 129 >gi|115525742|ref|YP_782653.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|209886524|ref|YP_002290381.1| hypothetical protein OCAR_7413 [Oligotropha carboxidovorans OM5] gi|299132279|ref|ZP_07025474.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] gi|115519689|gb|ABJ07673.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisA53] gi|209874720|gb|ACI94516.1| conserved domain protein [Oligotropha carboxidovorans OM5] gi|298592416|gb|EFI52616.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] Length = 70 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + Sbjct: 1 MSMGTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKSSADNLR 67 >gi|16519680|ref|NP_443800.1| putative cold-shock DNA-binding domain-containing protein [Sinorhizobium fredii NGR234] gi|2493775|sp|P55390|Y4CH_RHISN RecName: Full=Probable cold shock protein y4cH gi|2182333|gb|AAB92423.1| putative cold-shock DNA-binding domain-containing protein [Sinorhizobium fredii NGR234] Length = 69 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G++KW+N KG+GFI P+ + DVF+H SAV AGL L +GQ ++Y+ V++ Sbjct: 1 MMATGTVKWFNATKGFGFIQPD---DGSADVFVHISAVERAGLRELKDGQKISYELVKDR 57 Query: 61 ANGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 KSGKMSADNLQ 68 >gi|26987721|ref|NP_743146.1| cold-shock domain-contain protein [Pseudomonas putida KT2440] gi|24982409|gb|AAN66610.1|AE016288_9 cold-shock domain family protein [Pseudomonas putida KT2440] Length = 165 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT++ VQ Sbjct: 100 RQKGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQQVTFEAVQGQK 155 Query: 62 NGKYSAENLKLV 73 A+ ++ V Sbjct: 156 G--MQADKVQPV 165 >gi|297182471|gb|ADI18634.1| cold shock proteins [uncultured Rhodospirillales bacterium HF4000_24M03] Length = 89 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP KG+GFI PE + +D F+H SAV SAGL L EGQ V+Y+ Q Sbjct: 21 MATGTVKWFNPAKGFGFIEPE---DGSNDAFVHISAVESAGLTTLNEGQKVSYEL-QPGK 76 Query: 62 NGKYSAENLKLVP 74 NGK SAENL + Sbjct: 77 NGKSSAENLSVTE 89 >gi|39936734|ref|NP_949010.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris CGA009] gi|316933046|ref|YP_004108028.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|39650590|emb|CAE29113.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009] gi|315600760|gb|ADU43295.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 84 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+N KGYGFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + Sbjct: 15 VSMGTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 71 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 72 SGKSSADNLR 81 >gi|312795290|ref|YP_004028212.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] gi|312167065|emb|CBW74068.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] Length = 98 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFITP+ E G+D+F H SA+ G L EGQ V+++ VQ Sbjct: 31 MATGTVKWFNDAKGYGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVSFEVVQGPK 87 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 88 G--KQASNIQ 95 >gi|116693857|ref|YP_839390.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia HI2424] gi|116651857|gb|ABK12497.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia HI2424] Length = 170 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFITP+ GDD+F H S + G L EGQ V+Y+ +N Sbjct: 104 MDTGTVKWFNDNKGFGFITPDS---GGDDLFAHFSEIRGDGFKTLAEGQKVSYE-TKNGP 159 Query: 62 NGKYSAENLKLVPK 75 G ++ +VP+ Sbjct: 160 KGLQASN---IVPQ 170 >gi|323136224|ref|ZP_08071306.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] gi|322398298|gb|EFY00818.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] Length = 70 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G DVF+H SAV AGL +L EGQ V+Y+ V + Sbjct: 1 MATGTVKWFNSQKGFGFIQPDA---GGADVFVHISAVERAGLRDLLEGQKVSYEVVVDTR 57 Query: 62 NGKYSAENLKL 72 GK SA+NL++ Sbjct: 58 RGKSSADNLQI 68 >gi|254454339|ref|ZP_05067776.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus 238] gi|198268745|gb|EDY93015.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus 238] Length = 152 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G DVF+H SAV +GL L + Q VT+D V+ Sbjct: 85 MANGTVKWFNTTKGFGFIAPET---GGKDVFVHISAVERSGLTGLADDQKVTFD-VEAGR 140 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 141 DGRESAVNLAL 151 >gi|294509040|ref|YP_003565929.1| cold shock domain protein [Bacillus megaterium QM B1551] gi|294352344|gb|ADE72666.1| cold shock domain protein [Bacillus megaterium QM B1551] Length = 130 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ +G++KW+N DKG+GFI E GDDVF+H SA+ G +L EGQ VT+D Q Sbjct: 64 IMTQGTVKWFNADKGFGFIE----IEGGDDVFVHFSAIQGEGFKSLEEGQKVTFDIEQGQ 119 Query: 61 ANGKYSAEN 69 G +A Sbjct: 120 -RGAQAANV 127 >gi|170745542|ref|YP_001766999.1| cold-shock DNA-binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170659143|gb|ACB28197.1| cold-shock DNA-binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 69 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H SAV AGL +L EGQ + YD + Sbjct: 1 MATGTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGLRSLNEGQKIAYDVEADRR 57 Query: 62 NGKYSAENLK 71 +GK SA NLK Sbjct: 58 SGKESAANLK 67 >gi|170741171|ref|YP_001769826.1| cold-shock DNA-binding domain-containing protein [Methylobacterium sp. 4-46] gi|168195445|gb|ACA17392.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46] Length = 73 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G++KW+N KG+GFI P+ + G DVF+H SAV +GL L+EGQ V+Y+ + Sbjct: 4 MMSTGTVKWFNGQKGFGFIQPD---DGGKDVFVHISAVERSGLQTLSEGQKVSYELETDR 60 Query: 61 ANGKYSAENLK 71 +GK SA +L+ Sbjct: 61 RSGKQSAGSLR 71 >gi|300697692|ref|YP_003748353.1| Cold shock protein, DNA-binding (cspX ) [Ralstonia solanacearum CFBP2957] gi|299074416|emb|CBJ53966.1| Cold shock protein, DNA-binding (cspX ) [Ralstonia solanacearum CFBP2957] Length = 128 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ Q Sbjct: 61 IMATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQGP 117 Query: 61 ANGKYSAENLK 71 A N++ Sbjct: 118 KG--KQASNIQ 126 >gi|170743586|ref|YP_001772241.1| cold-shock DNA-binding domain-containing protein [Methylobacterium sp. 4-46] gi|168197860|gb|ACA19807.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46] Length = 69 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KGYGFI P+ + G DVF+H SAV AGL L EGQ V+Y+ + Sbjct: 1 MNTGTVKWFNDQKGYGFIQPD---DGGKDVFVHISAVERAGLRGLAEGQKVSYELQTDKR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKVAAANLQ 67 >gi|85703785|ref|ZP_01034889.1| Cold-shock protein [Roseovarius sp. 217] gi|85672713|gb|EAQ27570.1| Cold-shock protein [Roseovarius sp. 217] Length = 114 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+G G DVF+H SAV AGL L + Q VT+D ++ Sbjct: 47 MATGTVKWFNATKGYGFIAPDG---GGKDVFVHISAVERAGLTGLADDQKVTFDI-ESGR 102 Query: 62 NGKYSAENLKL 72 +G+ SA N+ L Sbjct: 103 DGRESASNISL 113 >gi|27379097|ref|NP_770626.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27352247|dbj|BAC49251.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 69 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + DVF+H SAV AGL +L EGQ V++D V + Sbjct: 1 MAMGTVKWFNTQKGYGFIQPD---DGQKDVFVHISAVERAGLSSLNEGQKVSFDIVADRR 57 Query: 62 NGKYSAENLKL 72 +GK SA+NL++ Sbjct: 58 SGKSSADNLRV 68 >gi|27376556|ref|NP_768085.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27349697|dbj|BAC46710.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 70 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ ++Y+ V + Sbjct: 1 MSMGTVKWFNATKGFGFIQPD---DGGKDVFVHISAVERAGLGTLREGQKISYEIVADRR 57 Query: 62 NGKYSAENLK 71 +GK +A+NL+ Sbjct: 58 SGKSAADNLR 67 >gi|256114052|ref|ZP_05454822.1| cold shock protein CSPA [Brucella melitensis bv. 3 str. Ether] gi|265995386|ref|ZP_06107943.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262766499|gb|EEZ12288.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 69 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G +VF+H SAV AGL L EGQ V+Y+ VQ+ Sbjct: 1 MATGTVKWFNTTKGFGFIQPD---QGGTNVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 57 Query: 62 NGKYSAENL 70 +G+ SA+NL Sbjct: 58 SGRSSADNL 66 >gi|90425189|ref|YP_533559.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90107203|gb|ABD89240.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB18] Length = 70 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + Sbjct: 1 MSMGTVKWFNATKGFGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRR 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKSSADNLR 67 >gi|296447314|ref|ZP_06889242.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] gi|296255179|gb|EFH02278.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] Length = 69 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ ++G DVF+H SAV AGL +L EGQ + Y+ Q+ Sbjct: 1 MATGTVKWFNAQKGYGFIQPD---DNGKDVFVHISAVERAGLRDLREGQKLDYELTQDRR 57 Query: 62 NGKYSAENLKLV 73 GK +A+ LK + Sbjct: 58 TGKSAADRLKAL 69 >gi|34498661|ref|NP_902876.1| cold shock transcription regulator protein [Chromobacterium violaceum ATCC 12472] gi|34104514|gb|AAQ60872.1| cold shock transcription regulator protein [Chromobacterium violaceum ATCC 12472] Length = 110 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E GDDVF H S + + G +L E Q V++D V+ Sbjct: 44 MATGTVKWFNDSKGFGFITPD---EGGDDVFAHFSQINAKGFRSLAENQRVSFDIVEG-P 99 Query: 62 NGKYSAENLKLV 73 GK A N++ + Sbjct: 100 KGKQ-ASNIQPI 110 >gi|319408889|emb|CBI82546.1| cold shock protein [Bartonella schoenbuchensis R1] Length = 70 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 3/73 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KG+GFI P + DVF+H SAV +GL NL EGQ ++Y+ VQ+ Sbjct: 1 MSSTGTVKWFNTTKGFGFIQP---NDGSADVFVHISAVERSGLSNLNEGQKISYEVVQDR 57 Query: 61 ANGKYSAENLKLV 73 +GK +A NL ++ Sbjct: 58 RSGKLAAGNLAVL 70 >gi|15965810|ref|NP_386163.1| cold shock transcription regulator protein [Sinorhizobium meliloti 1021] gi|307311344|ref|ZP_07590987.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307318877|ref|ZP_07598309.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|7387593|sp|Q9Z3S6|CSPA_RHIME RecName: Full=Cold shock protein CspA gi|3776223|gb|AAC64672.1| CspA [Sinorhizobium meliloti] gi|15075079|emb|CAC46636.1| Cold shock transcriptional regulator [Sinorhizobium meliloti 1021] gi|306895598|gb|EFN26352.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306899645|gb|EFN30273.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 69 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ + DVF+H SAV AG+ +L EGQ VTYD V++ Sbjct: 1 MNSGTVKWFNSTKGFGFIQPD---DGATDVFVHASAVERAGMRSLVEGQKVTYDIVRDTK 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKSSADNLR 67 >gi|295696558|ref|YP_003589796.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] gi|295412160|gb|ADG06652.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] Length = 66 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFITP+ + G DVF+H SA+ G L EGQ V YD V+ G Sbjct: 2 KGKVKWFNAEKGYGFITPD---DGGKDVFVHYSAIQEEGFRTLEEGQDVEYDIVEG-PRG 57 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 58 PQAANVVKL 66 >gi|163850319|ref|YP_001638362.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218528876|ref|YP_002419692.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240137390|ref|YP_002961861.1| major cold shock protein [Methylobacterium extorquens AM1] gi|254559570|ref|YP_003066665.1| major cold shock protein [Methylobacterium extorquens DM4] gi|163661924|gb|ABY29291.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218521179|gb|ACK81764.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240007358|gb|ACS38584.1| major cold shock protein [Methylobacterium extorquens AM1] gi|254266848|emb|CAX22647.1| major cold shock protein [Methylobacterium extorquens DM4] Length = 69 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H SAV AGL NL EGQ V+Y+ + + Sbjct: 1 MDTGTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGLRNLVEGQKVSYEVLTDKR 57 Query: 62 NGKYSAENLKLV 73 +GK +A NL+ V Sbjct: 58 SGKDAAGNLQAV 69 >gi|226495947|ref|NP_001141714.1| hypothetical protein LOC100273843 [Zea mays] gi|194705650|gb|ACF86909.1| unknown [Zea mays] Length = 303 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 RG++KW+N KG+GFI+PE + +D+F+H+S++ S G +L EG+ V + + D Sbjct: 60 RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 115 Query: 62 NGKYSAENLK 71 +G+ A ++ Sbjct: 116 DGRTKAVDVT 125 >gi|300023882|ref|YP_003756493.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525703|gb|ADJ24172.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 69 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G G+DVF+H SAV AGL L EGQ ++++ V + Sbjct: 1 MQTGTVKWFNSQKGFGFIQPDG---GGNDVFVHISAVERAGLNGLNEGQKISFEIVADRR 57 Query: 62 NGKYSAENLKLV 73 +GK SA+NL+ V Sbjct: 58 SGKSSADNLRPV 69 >gi|150397151|ref|YP_001327618.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150028666|gb|ABR60783.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] Length = 69 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ + DVF+H SAV AG+ +L EGQ VT+D V++ Sbjct: 1 MNSGTVKWFNSTKGFGFIQPD---DGATDVFVHASAVERAGMRSLVEGQKVTFDIVRDTK 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKSSADNLR 67 >gi|218281154|ref|ZP_03487680.1| hypothetical protein EUBIFOR_00241 [Eubacterium biforme DSM 3989] gi|218217600|gb|EEC91138.1| hypothetical protein EUBIFOR_00241 [Eubacterium biforme DSM 3989] Length = 90 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFIT +E G DVF+H S++ S G L EGQ VTYD V++D Sbjct: 21 MSTGKVKWFNAEKGYGFIT----SEDGKDVFVHYSSINSEGFKTLEEGQTVTYDVVESDR 76 Query: 62 NGKYSAENLKLVPKSS 77 A N+ +V ++ Sbjct: 77 G--QQANNVTVVDTAA 90 >gi|170751403|ref|YP_001757663.1| cold-shock DNA-binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170657925|gb|ACB26980.1| cold-shock DNA-binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 69 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H SAV AGL L EGQ V+Y+ + Sbjct: 1 MSTGTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGLRGLNEGQKVSYELETDRR 57 Query: 62 NGKYSAENLK 71 +GK SA L+ Sbjct: 58 SGKQSAGQLQ 67 >gi|23011600|ref|ZP_00051912.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 69 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ G DVF+H SAV AGL NL EGQ V+Y+ + + Sbjct: 1 MDTGTVKWFNETKGYGFIQPD---NGGKDVFVHISAVERAGLRNLVEGQKVSYEVLTDKR 57 Query: 62 NGKYSAENLKLV 73 +GK +A NL+ V Sbjct: 58 SGKDAAGNLQAV 69 >gi|163792428|ref|ZP_02186405.1| Cold-shock DNA-binding domain protein [alpha proteobacterium BAL199] gi|159182133|gb|EDP66642.1| Cold-shock DNA-binding domain protein [alpha proteobacterium BAL199] Length = 68 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE + DVF+H SAV AG+ +L EGQ V++D V+ Sbjct: 1 MATGTVKWFNATKGYGFIEPE---DGSADVFVHISAVERAGIASLNEGQKVSFD-VERGR 56 Query: 62 NGKYSAENLKLV 73 NGKY+A +L+ + Sbjct: 57 NGKYAATDLRPL 68 >gi|83312382|ref|YP_422646.1| cold shock protein [Magnetospirillum magneticum AMB-1] gi|82947223|dbj|BAE52087.1| Cold shock protein [Magnetospirillum magneticum AMB-1] Length = 69 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + GS+KW+N KGYGFI P+ G DVF+H SAV AGL L +GQ V+++ ++ Sbjct: 1 MPNGSVKWFNSTKGYGFIAPD---NGGPDVFVHISAVERAGLSGLNDGQKVSFEEERDPR 57 Query: 62 NGKYSAENLKLV 73 GK SA NLK++ Sbjct: 58 KGKTSAVNLKVL 69 >gi|255505169|ref|ZP_05344871.3| putative cold shock protein [Bryantella formatexigens DSM 14469] gi|255269407|gb|EET62612.1| putative cold shock protein [Bryantella formatexigens DSM 14469] Length = 91 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ V+YD + A Sbjct: 26 MNKGTVKWFNAEKGYGFIT----GEDGADVFVHFSAIQGEGFKSLEEGQAVSYDLTEG-A 80 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 81 RGMQAANVVKL 91 >gi|227535413|ref|ZP_03965462.1| CspA family cold shock transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187009|gb|EEI67076.1| CspA family cold shock transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 99 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT++ +D Sbjct: 33 LMEHGTVKWFNAEKGYGFITRE----DGSDVFVHFSAIQGDGYKTLEEGQAVTFEVEDSD 88 Query: 61 ANGKYSAENL 70 A N+ Sbjct: 89 RG--PQAVNV 96 >gi|75674509|ref|YP_316930.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255] gi|85713497|ref|ZP_01044487.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] gi|74419379|gb|ABA03578.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi Nb-255] gi|85699401|gb|EAQ37268.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] Length = 68 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 3/68 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + +G Sbjct: 1 MGTVKWFNATKGYGFIQPD---DGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSG 57 Query: 64 KYSAENLK 71 K SA+NL+ Sbjct: 58 KSSADNLR 65 >gi|299131851|ref|ZP_07025046.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] gi|298591988|gb|EFI52188.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] Length = 69 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI P T+ G DVF+H SAV AGL NL EGQ V ++ + Sbjct: 1 MAQGTVKWFNSQKGFGFIAP---TDGGTDVFVHISAVERAGLSNLAEGQKVEFEAKTDKM 57 Query: 62 NGKYSAENLKLV 73 GK SAENL+L+ Sbjct: 58 RGKTSAENLQLL 69 >gi|269954913|ref|YP_003324702.1| cold-shock DNA-binding domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269303594|gb|ACZ29144.1| cold-shock DNA-binding domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 67 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI PE + DVF H SA+ + G L EGQ V +D Q Sbjct: 1 MATGTVKWFNAEKGYGFIAPE---DGSQDVFAHYSAIQTNGYRTLEEGQRVEFDTAQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--LQAENIRAL 67 >gi|269127093|ref|YP_003300463.1| cold-shock DNA-binding domain-containing protein [Thermomonospora curvata DSM 43183] gi|268312051|gb|ACY98425.1| cold-shock DNA-binding domain protein [Thermomonospora curvata DSM 43183] Length = 68 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N +KGYGFI +G G DVF+H SA+ S+G L E Q V ++ Q Sbjct: 1 MPQQGTVKWFNAEKGYGFIAVDG---DGPDVFVHYSAIQSSGYRTLDENQRVEFEVTQGS 57 Query: 61 ANGKYSAENLKLV 73 A+ ++ + Sbjct: 58 RG--PQADQVRPL 68 >gi|258542856|ref|YP_003188289.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-01] gi|256633934|dbj|BAH99909.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-01] gi|256636993|dbj|BAI02962.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-03] gi|256640046|dbj|BAI06008.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-07] gi|256643102|dbj|BAI09057.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-22] gi|256646157|dbj|BAI12105.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-26] gi|256649210|dbj|BAI15151.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-32] gi|256652197|dbj|BAI18131.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655254|dbj|BAI21181.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-12] Length = 67 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H +AV +AGL L +GQ V++D V+ Sbjct: 1 MPTGTVKWFNATKGYGFIAPD---DGGKDVFVHITAVQAAGLRGLNDGQKVSFDLVEE-- 55 Query: 62 NGKYSAENLKL 72 GK +A NLK+ Sbjct: 56 RGKQAATNLKV 66 >gi|92116417|ref|YP_576146.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91799311|gb|ABE61686.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 69 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G G D+F+H SAV AGL +L +GQ V+++ + Sbjct: 1 MATGTVKWFNATKGFGFIQPDG---GGQDIFVHISAVERAGLSSLNDGQKVSFEAKTDSM 57 Query: 62 NGKYSAENLKL 72 GK SAENL++ Sbjct: 58 RGKTSAENLRV 68 >gi|58040591|ref|YP_192555.1| cold shock protein [Gluconobacter oxydans 621H] gi|58003005|gb|AAW61899.1| Cold shock protein [Gluconobacter oxydans 621H] Length = 96 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G D F+H S + AG+ L EGQ V+Y+ ++ Sbjct: 29 MATGTVKWFNSTKGFGFIQPD---NGGQDAFVHISELERAGMHTLNEGQHVSYEL-ESGR 84 Query: 62 NGKYSAENLKLV 73 NGK SA ++K + Sbjct: 85 NGKTSAVSIKAI 96 >gi|85714849|ref|ZP_01045835.1| cold shock protein [Nitrobacter sp. Nb-311A] gi|85698335|gb|EAQ36206.1| cold shock protein [Nitrobacter sp. Nb-311A] Length = 81 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI P+G G+DVF+H SAV AGL L EGQ V+++ ++A Sbjct: 13 MSTGIVKWFNSQKGYGFIQPDG---GGNDVFVHISAVQRAGLNGLGEGQKVSFEARTDEA 69 Query: 62 NGKYSAENLKL 72 GK SA+NL L Sbjct: 70 RGKVSAQNLSL 80 >gi|23009266|ref|ZP_00050379.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 69 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW++ KGYGFI P+ G DVF+H SAV AGL L EGQ VT+D + Sbjct: 1 MNTGTVKWFDEIKGYGFIQPD---NGGKDVFVHISAVQQAGLRGLAEGQKVTFDIENDRR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKPAAVNLQ 67 >gi|163867963|ref|YP_001609167.1| cold shock protein [Bartonella tribocorum CIP 105476] gi|161017614|emb|CAK01172.1| cold shock protein [Bartonella tribocorum CIP 105476] Length = 69 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P ++ DVF+H SAV +GL NL EGQ V+YD +Q+ Sbjct: 1 MSTGTVKWFNTTKGFGFIQP---SDGSADVFVHISAVERSGLSNLNEGQKVSYDVLQDRR 57 Query: 62 NGKYSAENLKLV 73 +GK++A NL + Sbjct: 58 SGKFAAGNLAAL 69 >gi|39936462|ref|NP_948738.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009] gi|39650318|emb|CAE28840.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009] Length = 75 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P ++ G+DVF+H SAV AGL L EGQ V+++ + Sbjct: 7 MTTGTVKWFNGQKGFGFIAP---SDGGNDVFVHISAVERAGLTGLAEGQKVSFEVKTDKM 63 Query: 62 NGKYSAENLKL 72 GK SAENL L Sbjct: 64 RGKSSAENLAL 74 >gi|25029285|ref|NP_739339.1| hypothetical protein CE2729 [Corynebacterium efficiens YS-314] gi|23494573|dbj|BAC19539.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 251 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P ++ DVF+H S + G NL E Q V ++ + Sbjct: 185 MAQGTVKWFNAEKGFGFIAP---SDGSADVFVHYSEIQGNGFRNLEENQQVEFELGEGAK 241 Query: 62 NGKYSAENLKLV 73 A+ ++ + Sbjct: 242 G--PQAQQVRAL 251 >gi|223973253|gb|ACN30814.1| unknown [Zea mays] Length = 444 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 RG++KW+N KG+GFI+PE + +D+F+H+S++ S G +L EG+ V + + D Sbjct: 6 RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61 Query: 62 NGKYSAENLK 71 +G+ A ++ Sbjct: 62 DGRTKAVDVT 71 >gi|220911419|ref|YP_002486728.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|325961974|ref|YP_004239880.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] gi|219858297|gb|ACL38639.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|323468061|gb|ADX71746.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] Length = 67 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+ + DVF H SA+AS+G +L E Q V +D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAPD---DGSADVFAHYSAIASSGYRSLDENQKVEFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPL 67 >gi|220920871|ref|YP_002496172.1| cold-shock DNA-binding domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219945477|gb|ACL55869.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans ORS 2060] Length = 69 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV +GL L+EGQ V+Y+ + Sbjct: 1 MSIGTVKWFNGQKGFGFIQPD---DGGKDVFVHISAVERSGLHTLSEGQKVSYELETDRR 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKQSAGNLR 67 >gi|182680002|ref|YP_001834148.1| cold-shock DNA-binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635885|gb|ACB96659.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 69 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI P+ E G DVF+H SAV +GL +L EGQ + YD V + Sbjct: 1 MSTGTVKWFNAEKGYGFIQPD---EGGKDVFVHISAVEQSGLRHLAEGQKINYDVVPDKR 57 Query: 62 NGKYSAENLK 71 GK SA NL+ Sbjct: 58 TGKSSAGNLR 67 >gi|49475887|ref|YP_033928.1| cold shock protein [Bartonella henselae str. Houston-1] gi|49238695|emb|CAF27946.1| Cold shock protein [Bartonella henselae str. Houston-1] Length = 69 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P ++ DVF+H SAV +GL NL EGQ V+YD +Q+ Sbjct: 1 MSTGTVKWFNTTKGFGFIQP---SDGSADVFVHISAVERSGLSNLNEGQKVSYDVLQDRR 57 Query: 62 NGKYSAENLKLV 73 +GK++A NL + Sbjct: 58 SGKFAAGNLATL 69 >gi|49474484|ref|YP_032526.1| cold shock protein [Bartonella quintana str. Toulouse] gi|49239988|emb|CAF26402.1| Cold shock protein [Bartonella quintana str. Toulouse] Length = 69 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P ++ DVF+H SAV +GL L EGQ ++YD + + Sbjct: 1 MSTGTVKWFNATKGFGFIQP---SDGSVDVFVHISAVERSGLSTLNEGQKISYDVLHDRR 57 Query: 62 NGKYSAENL 70 +GK +A NL Sbjct: 58 SGKPAAGNL 66 >gi|330469983|ref|YP_004407726.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] gi|328812954|gb|AEB47126.1| cold-shock DNA-binding domain protein [Verrucosispora maris AB-18-032] Length = 67 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFITP+G G DVF H SA+ S+G +L E Q V ++ VQ Sbjct: 1 MAIGTVKWFNADKGFGFITPDG---GGADVFAHFSAIQSSGYRSLDENQRVEFEVVQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPL 67 >gi|170751748|ref|YP_001758008.1| cold-shock DNA-binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170658270|gb|ACB27325.1| cold-shock DNA-binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 69 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KGYGFI P+ + G DVF+H SAV AG+ NL EGQ + Y+ + + Sbjct: 1 MNTGTVKWFNETKGYGFIQPD---DGGKDVFVHISAVERAGMRNLIEGQRIAYEILTDKR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKDAAGNLQ 67 >gi|85714683|ref|ZP_01045670.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] gi|85698568|gb|EAQ36438.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] Length = 90 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G+DVF+H SAV AGL L EGQ VT++ + Sbjct: 22 MTTGTVKWFNGQKGFGFIQP---NNGGNDVFVHISAVERAGLSGLNEGQQVTFEVKTDKM 78 Query: 62 NGKYSAENLKL 72 GK SAENL L Sbjct: 79 RGKVSAENLSL 89 >gi|302869749|ref|YP_003838386.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029] gi|315503769|ref|YP_004082656.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|302572608|gb|ADL48810.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC 27029] gi|315410388|gb|ADU08505.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] Length = 67 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFITP+ + G DVF H SA+ ++G +L E Q V ++ Q Sbjct: 1 MAIGTVKWFNADKGFGFITPD---DGGADVFAHFSAIQTSGYRSLDENQRVEFEVTQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPL 67 >gi|238893691|ref|YP_002918425.1| cold shock protein CspE [Klebsiella pneumoniae NTUH-K2044] gi|238546007|dbj|BAH62358.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 97 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ N A G Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 88 Query: 64 KYSAENLKL 72 +A + L Sbjct: 89 PSAANVIAL 97 >gi|157146760|ref|YP_001454079.1| cold shock protein CspE [Citrobacter koseri ATCC BAA-895] gi|157083965|gb|ABV13643.1| hypothetical protein CKO_02534 [Citrobacter koseri ATCC BAA-895] Length = 100 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ N A G Sbjct: 36 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 91 Query: 64 KYSAENLKL 72 +A + L Sbjct: 92 PSAANVIAL 100 >gi|229551920|ref|ZP_04440645.1| CspA family cold shock transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229314655|gb|EEN80628.1| CspA family cold shock transcriptional regulator [Lactobacillus rhamnosus LMS2-1] Length = 99 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT++ +D Sbjct: 33 LMEHGTVKWFNAEKGYGFITRE----DGSDVFVHFSAIQGEGYKTLEEGQAVTFEVEDSD 88 Query: 61 ANGKYSAENL 70 A N+ Sbjct: 89 RG--PQAVNV 96 >gi|240850168|ref|YP_002971561.1| cold shock protein [Bartonella grahamii as4aup] gi|240267291|gb|ACS50879.1| cold shock protein [Bartonella grahamii as4aup] Length = 69 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P ++ DVF+H SAV +GL +L EGQ ++YD +Q+ Sbjct: 1 MSTGTVKWFNTTKGFGFIQP---SDGSADVFVHISAVERSGLNSLNEGQKISYDVLQDRR 57 Query: 62 NGKYSAENLKLV 73 +GK++A NL + Sbjct: 58 SGKFAAGNLAAL 69 >gi|320161036|ref|YP_004174260.1| cold shock protein [Anaerolinea thermophila UNI-1] gi|319994889|dbj|BAJ63660.1| cold shock protein [Anaerolinea thermophila UNI-1] Length = 72 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI + +GDDVF+H SA+ G L EGQ V ++ Q Sbjct: 4 RYTGTVKWFNATKGYGFIGRDD--NAGDDVFVHFSAIQMEGYRTLKEGQKVEFEIEQG-P 60 Query: 62 NGKYSAENLKL 72 G +A+ + L Sbjct: 61 KGLQAAQVVPL 71 >gi|242063850|ref|XP_002453214.1| hypothetical protein SORBIDRAFT_04g001720 [Sorghum bicolor] gi|241933045|gb|EES06190.1| hypothetical protein SORBIDRAFT_04g001720 [Sorghum bicolor] Length = 251 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 RG++KW+N KG+GFI+PE + +D+F+H+S++ S G +L EG+ V + + D Sbjct: 6 RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61 Query: 62 NGKYSAENLK 71 +G+ A ++ Sbjct: 62 DGRTKAVDVT 71 >gi|238060935|ref|ZP_04605644.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|237882746|gb|EEP71574.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] Length = 67 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFITP+G G DVF H SA+ S+G +L E Q V ++ Q Sbjct: 1 MAIGTVKWFNADKGFGFITPDG---GGADVFAHFSAIQSSGYRSLDENQRVEFEITQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPL 67 >gi|296446940|ref|ZP_06888875.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] gi|296255507|gb|EFH02599.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] Length = 69 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ G DVF+H SAV AG+ L EGQ + +D V+++ Sbjct: 1 MNIGTVKWFNATKGFGFIQPD---NGGADVFVHISAVERAGMQTLAEGQKIQFDLVRDNK 57 Query: 62 NGKYSAENLKL 72 +GK SA NL++ Sbjct: 58 SGKSSAGNLQI 68 >gi|288962373|ref|YP_003452668.1| cold shock protein [Azospirillum sp. B510] gi|288914639|dbj|BAI76124.1| cold shock protein [Azospirillum sp. B510] Length = 69 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G DVF+H SAV AGL +L +GQ ++Y+ ++ Sbjct: 1 MPVGTVKWFNSTKGFGFIQPES---GGPDVFVHISAVERAGLRSLVDGQKISYEEQRDPK 57 Query: 62 NGKYSAENLKLV 73 GK SAENLK V Sbjct: 58 RGKTSAENLKAV 69 >gi|116669038|ref|YP_829971.1| cold-shock DNA-binding protein family protein [Arthrobacter sp. FB24] gi|116609147|gb|ABK01871.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24] Length = 67 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+ + DVF H SA+A++G +L E Q V +D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAPD---DGSADVFAHYSAIATSGYRSLDENQKVEFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPL 67 >gi|23004357|ref|ZP_00047730.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 67 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI PE + DVF H SA+ S G L E Q V +D Q Sbjct: 1 MATGTVKWFNSEKGYGFIAPE---DGSADVFAHYSAIQSQGFRTLEENQRVEFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ V Sbjct: 58 G--PQAENIRPV 67 >gi|297744636|emb|CBI37898.3| unnamed protein product [Vitis vinifera] Length = 236 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP+ + GDD+F+H+S++ S G +L EG+ V + V++ +G Sbjct: 5 TGTVKWFNDQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDG 60 Query: 64 KYSAENLK 71 + A ++ Sbjct: 61 RTKAVDVT 68 >gi|188580080|ref|YP_001923525.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] gi|179343578|gb|ACB78990.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] Length = 69 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ G DVF+H SAV AGL NL EGQ ++Y+ + + Sbjct: 1 MDTGTVKWFNETKGYGFIQPD---NGGKDVFVHISAVERAGLRNLVEGQKISYEVLTDKR 57 Query: 62 NGKYSAENLKLV 73 +GK +A NL+ V Sbjct: 58 SGKDAAGNLQAV 69 >gi|225075510|ref|ZP_03718709.1| hypothetical protein NEIFLAOT_00523 [Neisseria flavescens NRL30031/H210] gi|269213456|ref|ZP_05982011.2| cold shock transcription regulator protein [Neisseria cinerea ATCC 14685] gi|284800098|ref|ZP_05985718.2| cold shock transcription regulator protein [Neisseria subflava NJ9703] gi|224953145|gb|EEG34354.1| hypothetical protein NEIFLAOT_00523 [Neisseria flavescens NRL30031/H210] gi|269146157|gb|EEZ72575.1| cold shock transcription regulator protein [Neisseria cinerea ATCC 14685] gi|284795950|gb|EFC51297.1| cold shock transcription regulator protein [Neisseria subflava NJ9703] Length = 80 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMDGFKTLKEGQRVSFDVT-TG 68 Query: 61 ANGKYSAE 68 GK +A Sbjct: 69 PKGKQAAN 76 >gi|27382370|ref|NP_773899.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27355541|dbj|BAC52524.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 67 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ +G++KW+NP KGYGFI P G DVF+H SAV AGL L EGQ V Y+ + N Sbjct: 1 MMAKGTVKWFNPTKGYGFIQP---ASGGKDVFVHISAVQKAGLSTLNEGQTVEYEEIAN- 56 Query: 61 ANGKYSAENLKL 72 GK SAENLK+ Sbjct: 57 -RGKTSAENLKV 67 >gi|217977958|ref|YP_002362105.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] gi|217503334|gb|ACK50743.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] Length = 69 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NPDKGYGFI P+ + G DVF+H SAV +GL +L EGQ + Y+ + + Sbjct: 1 MTTGTVKWFNPDKGYGFIQPD---DGGKDVFVHISAVEQSGLRHLQEGQKINYEVIADKR 57 Query: 62 NGKYSAENLK 71 GK SA NL+ Sbjct: 58 TGKSSAGNLR 67 >gi|23012538|ref|ZP_00052598.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 69 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + GS+KW+N KG+GFI P+ G DVF+H SAV AGL L +GQ V+++ ++ Sbjct: 1 MPNGSVKWFNSTKGFGFIAPD---NGGPDVFVHISAVERAGLSGLNDGQKVSFEEERDPR 57 Query: 62 NGKYSAENLKLV 73 GK SA NLK++ Sbjct: 58 KGKTSAVNLKVL 69 >gi|86749607|ref|YP_486103.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris HaA2] gi|86572635|gb|ABD07192.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris HaA2] Length = 67 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + YD V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TSGDKDVFVHISAVERAGLSTLNENQAIEYDLVEN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLKL Sbjct: 56 RGKTSAENLKL 66 >gi|290963042|ref|YP_003494224.1| cold shock protein [Streptomyces scabiei 87.22] gi|260652568|emb|CBG75701.1| putative cold shock protein [Streptomyces scabiei 87.22] Length = 96 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H SA+ S+G L EGQ VT+D Q Sbjct: 30 MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSSGFRELQEGQAVTFDVTQGQK 86 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 87 G--PQAENIT 94 >gi|161869773|ref|YP_001598941.1| transcriptional regulator [Neisseria meningitidis 053442] gi|304387853|ref|ZP_07370027.1| cold shock transcription regulator protein [Neisseria meningitidis ATCC 13091] gi|161595326|gb|ABX72986.1| transcriptional regulator [Neisseria meningitidis 053442] gi|304338118|gb|EFM04254.1| cold shock transcription regulator protein [Neisseria meningitidis ATCC 13091] gi|325129992|gb|EGC52787.1| putative transcriptional regulator [Neisseria meningitidis OX99.30304] gi|325132021|gb|EGC54719.1| putative transcriptional regulator [Neisseria meningitidis M6190] gi|325134026|gb|EGC56681.1| putative transcriptional regulator [Neisseria meningitidis M13399] gi|325135947|gb|EGC58557.1| putative transcriptional regulator [Neisseria meningitidis M0579] gi|325137775|gb|EGC60350.1| putative transcriptional regulator [Neisseria meningitidis ES14902] gi|325140014|gb|EGC62543.1| putative transcriptional regulator [Neisseria meningitidis CU385] gi|325142116|gb|EGC64542.1| putative transcriptional regulator [Neisseria meningitidis 961-5945] gi|325144132|gb|EGC66439.1| putative transcriptional regulator [Neisseria meningitidis M01-240013] gi|325198041|gb|ADY93497.1| putative transcriptional regulator [Neisseria meningitidis G2136] gi|325200482|gb|ADY95937.1| putative transcriptional regulator [Neisseria meningitidis H44/76] gi|325202374|gb|ADY97828.1| putative transcriptional regulator [Neisseria meningitidis M01-240149] gi|325203909|gb|ADY99362.1| putative transcriptional regulator [Neisseria meningitidis M01-240355] gi|325206328|gb|ADZ01781.1| putative transcriptional regulator [Neisseria meningitidis M04-240196] gi|325207874|gb|ADZ03326.1| putative transcriptional regulator [Neisseria meningitidis NZ-05/33] Length = 80 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFDVT-TG 68 Query: 61 ANGKYSAE 68 GK +A Sbjct: 69 PKGKQAAN 76 >gi|255065177|ref|ZP_05317032.1| cold shock transcription regulator protein [Neisseria sicca ATCC 29256] gi|269214299|ref|ZP_06158484.1| cold shock transcription regulator protein [Neisseria lactamica ATCC 23970] gi|288575418|ref|ZP_05976942.2| cold shock transcription regulator protein [Neisseria mucosa ATCC 25996] gi|297250909|ref|ZP_06865276.2| cold shock transcription regulator protein [Neisseria polysaccharea ATCC 43768] gi|255050598|gb|EET46062.1| cold shock transcription regulator protein [Neisseria sicca ATCC 29256] gi|269210156|gb|EEZ76611.1| cold shock transcription regulator protein [Neisseria lactamica ATCC 23970] gi|288568095|gb|EFC89655.1| cold shock transcription regulator protein [Neisseria mucosa ATCC 25996] gi|296837712|gb|EFH21650.1| cold shock transcription regulator protein [Neisseria polysaccharea ATCC 43768] Length = 80 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D Sbjct: 13 LMATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFDVT-TG 68 Query: 61 ANGKYSAE 68 GK +A Sbjct: 69 PKGKQAAN 76 >gi|167757688|ref|ZP_02429815.1| hypothetical protein CLOSCI_00018 [Clostridium scindens ATCC 35704] gi|167664708|gb|EDS08838.1| hypothetical protein CLOSCI_00018 [Clostridium scindens ATCC 35704] Length = 104 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +++ G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT+D + Sbjct: 35 LMNNGTVKWFNSEKGYGFIT----GEDGKDVFVHFSAIMCDGFKTLEEGQAVTFDVEADP 90 Query: 61 AN-GKYSAENL 70 + K A N+ Sbjct: 91 KDSRKLKAVNV 101 >gi|150377524|ref|YP_001314119.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150032071|gb|ABR64186.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] Length = 68 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + DVF+H SAV AGL +L +GQ +TY+ V++ Sbjct: 1 MATGTVKWFNATKGFGFIQPD---DGSPDVFVHISAVERAGLQDLKDGQKITYELVKDRK 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKMSADNLR 67 >gi|46202348|ref|ZP_00053353.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 91 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + GS+KW+N KGYGFI P+ G DVF+H SAV AGL L +GQ V++D ++ Sbjct: 23 MPNGSVKWFNSTKGYGFIAPD---NGGADVFVHISAVERAGLSGLNDGQKVSFDEERDPK 79 Query: 62 NGKYSAENLKL 72 GK SA NLK+ Sbjct: 80 KGKTSAVNLKV 90 >gi|110634259|ref|YP_674467.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp. BNC1] gi|110285243|gb|ABG63302.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1] Length = 69 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ DVF+H SAV AG+ +L EGQ + ++ V++ Sbjct: 1 MTTGTVKWFNATKGFGFIQPDSGQ---PDVFVHISAVEQAGMRSLVEGQKIDFEVVRDPK 57 Query: 62 NGKYSAENLKLV 73 +GK +A NL+ V Sbjct: 58 SGKSAAANLQAV 69 >gi|302535905|ref|ZP_07288247.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302444800|gb|EFL16616.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 69 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKLVP 74 A+ +KL P Sbjct: 57 G--PQADMVKLAP 67 >gi|260597049|ref|YP_003209620.1| cold shock protein CspE [Cronobacter turicensis z3032] gi|260216226|emb|CBA29122.1| Cold shock-like protein cspE [Cronobacter turicensis z3032] Length = 97 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ N A G Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 88 Query: 64 KYSAENLKL 72 +A + L Sbjct: 89 PSAANVIAL 97 >gi|163793339|ref|ZP_02187314.1| pyridoxal phosphate biosynthetic protein PdxJ [alpha proteobacterium BAL199] gi|159181141|gb|EDP65656.1| pyridoxal phosphate biosynthetic protein PdxJ [alpha proteobacterium BAL199] Length = 70 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G G D F+H SAV +GL +L EGQ V Y+ V + Sbjct: 1 MATGTVKWFNAQKGFGFIEPDG---GGSDAFVHISAVERSGLSDLREGQKVDYELVSDRK 57 Query: 62 NGKYSAENLKLV 73 +GK SA+NLK++ Sbjct: 58 SGKMSADNLKVL 69 >gi|145593188|ref|YP_001157485.1| cold-shock DNA-binding domain-containing protein [Salinispora tropica CNB-440] gi|145302525|gb|ABP53107.1| cold-shock DNA-binding protein family [Salinispora tropica CNB-440] Length = 67 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFITP+G G DVF H SA+A++G +L E Q V +D Q Sbjct: 1 MTTGTVKWFNADKGFGFITPDG---GGADVFAHFSAIATSGFRSLDENQKVEFDITQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPL 67 >gi|326331965|ref|ZP_08198251.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] gi|325950278|gb|EGD42332.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] Length = 67 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E + GDDVF+H SA+ + G L E Q V +D Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAQE---DGGDDVFVHYSAIQTQGYKTLDENQKVEFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENVRPL 67 >gi|238015158|gb|ACR38614.1| unknown [Zea mays] Length = 240 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 RG++KW+N KG+GFI+PE + +D+F+H+S++ S G +L EG+ V + + D Sbjct: 6 RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61 Query: 62 NGKYSAENLK 71 +G+ A ++ Sbjct: 62 DGRTKAVDVT 71 >gi|224033945|gb|ACN36048.1| unknown [Zea mays] Length = 249 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 RG++KW+N KG+GFI+PE + +D+F+H+S++ S G +L EG+ V + + D Sbjct: 6 RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61 Query: 62 NGKYSAENLK 71 +G+ A ++ Sbjct: 62 DGRTKAVDVT 71 >gi|114797127|ref|YP_758844.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114737301|gb|ABI75426.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 69 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ + G D+F+H SAV +GL L E Q ++Y+ +++ Sbjct: 1 MATGKVKWFNDQKGFGFIKPD---DGGADIFVHISAVERSGLKTLAENQSISYELYKDER 57 Query: 62 NGKYSAENLKLV 73 GK SA +LK++ Sbjct: 58 RGKTSAVDLKVL 69 >gi|316933716|ref|YP_004108698.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601430|gb|ADU43965.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 67 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + YD V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQAIEYDLVEN-- 55 Query: 62 NGKYSAENLKL 72 G+ SAENLK+ Sbjct: 56 RGRTSAENLKI 66 >gi|284031585|ref|YP_003381516.1| cold-shock DNA-binding domain-containing protein [Kribbella flavida DSM 17836] gi|283810878|gb|ADB32717.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM 17836] Length = 67 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFITP+ + G DVF H SA+ ++G +L E Q V ++ Q Sbjct: 1 MAVGTVKWFNADKGFGFITPD---DGGADVFAHYSAIQTSGFRSLDENQRVEFEITQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--LQAENIRPI 67 >gi|39936116|ref|NP_948392.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris CGA009] gi|192291834|ref|YP_001992439.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] gi|39649970|emb|CAE28494.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009] gi|192285583|gb|ACF01964.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] Length = 67 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + YD V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQPIEYDLVEN-- 55 Query: 62 NGKYSAENLKL 72 G+ SAENLK+ Sbjct: 56 RGRTSAENLKI 66 >gi|220921802|ref|YP_002497103.1| cold-shock DNA-binding domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219946408|gb|ACL56800.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans ORS 2060] Length = 69 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KGYGFI P+ + G DVF+H SAV AGL L EGQ ++Y+ + Sbjct: 1 MNTGTVKWFNDQKGYGFIQPD---DGGKDVFVHISAVERAGLRGLVEGQKISYELQTDKR 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKVSAGNLQ 67 >gi|92116020|ref|YP_575749.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91798914|gb|ABE61289.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 68 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 3/68 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFI P+ + G+DVF+H SAV AGL L EGQ ++Y+ V + +G Sbjct: 1 MGTVKWFNATKGYGFIQPD---DGGNDVFVHVSAVERAGLGTLREGQKISYEIVADRRSG 57 Query: 64 KYSAENLK 71 K SA+NL+ Sbjct: 58 KSSADNLR 65 >gi|86139243|ref|ZP_01057813.1| cold shock family protein [Roseobacter sp. MED193] gi|85824087|gb|EAQ44292.1| cold shock family protein [Roseobacter sp. MED193] Length = 120 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G T DVF+H SAV +GL L + Q VT+D + Sbjct: 53 MATGTVKWFNSTKGFGFIAPDGGT---KDVFVHISAVERSGLTGLADNQKVTFDI-EPGR 108 Query: 62 NGKYSAENLKLV 73 +G+ +A NL LV Sbjct: 109 DGREAAVNLALV 120 >gi|254294491|ref|YP_003060514.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] gi|254043022|gb|ACT59817.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] Length = 69 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H +AV AGL L EGQ V ++ V + Sbjct: 1 MTTGTVKWFNATKGYGFIAPD---DGGADVFVHVTAVQQAGLAGLDEGQKVEFELVTDPK 57 Query: 62 NGKYSAENLK 71 GK SA +LK Sbjct: 58 RGKTSAGDLK 67 >gi|46201253|ref|ZP_00055476.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] gi|83310692|ref|YP_420956.1| cold shock protein [Magnetospirillum magneticum AMB-1] gi|82945533|dbj|BAE50397.1| Cold shock protein [Magnetospirillum magneticum AMB-1] Length = 69 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE + D+F+H SAV AG+ NL EGQ ++++ ++ Sbjct: 1 MPNGTVKWFNATKGYGFIQPE---DGSADIFVHISAVERAGIGNLKEGQKLSFETERDPR 57 Query: 62 NGKYSAENLKLV 73 GK SA NLK + Sbjct: 58 KGKSSAVNLKAL 69 >gi|218290263|ref|ZP_03494417.1| cold-shock DNA-binding domain protein [Alicyclobacillus acidocaldarius LAA1] gi|258512161|ref|YP_003185595.1| cold-shock DNA-binding domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218239738|gb|EED06929.1| cold-shock DNA-binding domain protein [Alicyclobacillus acidocaldarius LAA1] gi|257478887|gb|ACV59206.1| cold-shock DNA-binding domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 66 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KGYGFI E +GDDVF+H SA+ G L EGQ VT+D V+ Sbjct: 1 MYEGTVKWFNSEKGYGFIQVE----NGDDVFVHYSAIQGHGFKTLDEGQRVTFDIVEG-P 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 KGPQAANVVK 65 >gi|68164476|gb|AAY87205.1| predicted cold shock family protein [uncultured bacterium BAC17H8] Length = 83 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 51/72 (70%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFI P+ E G+DVF+H +AV ++GL L EGQ V+Y+ + Sbjct: 15 MAQGTVKWFNTQKGYGFINPD---EDGNDVFVHITAVQNSGLTGLNEGQRVSYELAE-QR 70 Query: 62 NGKYSAENLKLV 73 NG+++A +L +V Sbjct: 71 NGRFAAVDLSIV 82 >gi|289640776|ref|ZP_06472947.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] gi|289509352|gb|EFD30280.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] Length = 67 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+P+G DVF+H SA+A+ G L E Q V +D Q Sbjct: 1 MTQGTVKWFNAEKGFGFISPDG---GSPDVFVHFSAIATNGYKTLEENQRVEFDTTQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENVRPL 67 >gi|163851319|ref|YP_001639362.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|163662924|gb|ABY30291.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] Length = 69 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H SAV AGL L EGQ V+Y+ + Sbjct: 1 MATGTVKWFNGTKGYGFIQPD---DGGKDVFVHISAVERAGLRELAEGQKVSYEVEIDRR 57 Query: 62 NGKYSAENLKL 72 +GK SA L++ Sbjct: 58 SGKESAGQLQV 68 >gi|92118046|ref|YP_577775.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91800940|gb|ABE63315.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 69 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G G D+F+H SAV AGL +L +GQ V+++ + Sbjct: 1 MATGTVKWFNATKGFGFIQPDG---GGQDIFVHTSAVERAGLSSLNDGQKVSFEAKTDSM 57 Query: 62 NGKYSAENLKL 72 GK SAENL++ Sbjct: 58 RGKTSAENLRV 68 >gi|256390666|ref|YP_003112230.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256356892|gb|ACU70389.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 67 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI+ + E G DVF+H SA+ S+G +L E Q V ++ Q Sbjct: 1 MAQGTVKWFNGEKGYGFISQD---EGGPDVFVHFSAIQSSGYRSLEENQRVEFEVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ V Sbjct: 58 G--AQAENVRPV 67 >gi|110804727|ref|YP_688247.1| cold shock protein CspE [Shigella flexneri 5 str. 8401] gi|110614275|gb|ABF02942.1| cold shock protein [Shigella flexneri 5 str. 8401] gi|281600039|gb|ADA73023.1| Cold shock protein [Shigella flexneri 2002017] Length = 97 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ N A G Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 88 Query: 64 KYSAENLKL 72 +A + L Sbjct: 89 PSAANVIAL 97 >gi|187479893|ref|YP_787918.1| cold shock protein [Bordetella avium 197N] gi|115424480|emb|CAJ51034.1| cold shock protein [Bordetella avium 197N] Length = 68 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V +D V++ Sbjct: 1 MAQKGKVKWFNADKGYGFITPDS---GGTDVFAHFSAIQGRGYRSLNEGQEVEFD-VKDG 56 Query: 61 ANGKYSAE 68 G +AE Sbjct: 57 PKGPQAAE 64 >gi|259047285|ref|ZP_05737686.1| cold shock protein [Granulicatella adiacens ATCC 49175] gi|259036061|gb|EEW37316.1| cold shock protein [Granulicatella adiacens ATCC 49175] Length = 75 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G+DVF+H SA+ S G L EGQ V +D V+ A Sbjct: 10 MEQGTVKWFNSEKGFGFIERE----GGNDVFVHFSAIQSEGFKTLEEGQAVQFD-VEEGA 64 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 65 RGPQAANVVKL 75 >gi|218677799|ref|ZP_03525696.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894] Length = 69 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + DVF+H SAV AG+ +L +GQ ++Y+ V+++ Sbjct: 1 MSTGTVKWFNATKGYGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYELVRDNK 57 Query: 62 NGKYSAENLK 71 +GK SA+ L+ Sbjct: 58 SGKMSADRLQ 67 >gi|332671934|ref|YP_004454942.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340972|gb|AEE47555.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484] Length = 67 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+ + G DVF H SA+ S+G +L E Q V +D Q Sbjct: 1 MPVGTVKWFNAEKGFGFIAPD---DGGPDVFAHYSAIQSSGYRSLEENQKVQFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--PQASNITPL 67 >gi|291085708|ref|ZP_06353810.2| putative cold shock protein [Citrobacter youngae ATCC 29220] gi|291070213|gb|EFE08322.1| putative cold shock protein [Citrobacter youngae ATCC 29220] Length = 100 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ N A G Sbjct: 36 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 91 Query: 64 KYSAENLKL 72 +A + L Sbjct: 92 PSAANVIAL 100 >gi|241896392|ref|ZP_04783688.1| CspA family cold shock transcriptional regulator [Weissella paramesenteroides ATCC 33313] gi|241870372|gb|EER74123.1| CspA family cold shock transcriptional regulator [Weissella paramesenteroides ATCC 33313] Length = 75 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKGYGFI+ E SGDDVF+H SA+ + G +L EGQ V+++ Q D Sbjct: 10 MEQGTVKWFNADKGYGFISRE----SGDDVFVHFSAIQTDGFKSLEEGQAVSFEVQQGD- 64 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 65 RGLQAANVSKL 75 >gi|229020404|ref|ZP_04177159.1| hypothetical protein bcere0030_48910 [Bacillus cereus AH1273] gi|229026633|ref|ZP_04182975.1| hypothetical protein bcere0029_49020 [Bacillus cereus AH1272] gi|228734666|gb|EEL85318.1| hypothetical protein bcere0029_49020 [Bacillus cereus AH1272] gi|228740883|gb|EEL91126.1| hypothetical protein bcere0030_48910 [Bacillus cereus AH1273] Length = 89 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + Sbjct: 23 MNMQGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 77 Query: 61 ANGKYSAENLKL 72 A G +A +KL Sbjct: 78 ARGPQAANVVKL 89 >gi|269793596|ref|YP_003313051.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM 10542] gi|269095781|gb|ACZ20217.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM 10542] Length = 67 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI PE + DVF H SA+ S+G +L E Q V +D Q Sbjct: 1 MAVGTVKWFNAEKGFGFIAPE---DGSADVFAHYSAIQSSGYRSLDENQKVEFDITQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPL 67 >gi|192360604|ref|YP_001983030.1| cold-shock protein CspD [Cellvibrio japonicus Ueda107] gi|190686769|gb|ACE84447.1| cold-shock protein CspD [Cellvibrio japonicus Ueda107] Length = 125 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 6/76 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KGYGFI + E G+D+F H SA++ G L GQ V+++ + D Sbjct: 41 IMPTGTVKWFNNAKGYGFILAD---EGGEDLFAHYSAISMDGYKTLKAGQQVSFEITRGD 97 Query: 61 ANGKYSAENLKLVPKS 76 A N+ + P+S Sbjct: 98 KG--LHAINI-VAPQS 110 >gi|114328925|ref|YP_746082.1| cold shock protein [Granulibacter bethesdensis CGDNIH1] gi|114317099|gb|ABI63159.1| cold shock protein [Granulibacter bethesdensis CGDNIH1] Length = 100 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP KGYGFI P + DVF+H SAV AGL +L EGQ + ++ Q Sbjct: 32 MLHGTVKWFNPTKGYGFIAP---STGEKDVFVHISAVQRAGLRSLNEGQQLDFEIEQ-QQ 87 Query: 62 NGKYSAENLK 71 NG+ +A NL Sbjct: 88 NGRAAAVNLT 97 >gi|323357927|ref|YP_004224323.1| cold shock proteins [Microbacterium testaceum StLB037] gi|323274298|dbj|BAJ74443.1| cold shock proteins [Microbacterium testaceum StLB037] Length = 70 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N +KG+GFI P+ + G DVF H SA+ S G +L E Q V ++ Q Sbjct: 3 MSTQGTVKWFNSEKGFGFIAPD---DGGQDVFAHYSAIQSGGYRSLEENQRVEFEIAQGP 59 Query: 61 ANGKYSAENLKLV 73 AE+++ + Sbjct: 60 KG--LQAEDIRPI 70 >gi|302865133|ref|YP_003833770.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029] gi|315501633|ref|YP_004080520.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|302567992|gb|ADL44194.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC 27029] gi|315408252|gb|ADU06369.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] Length = 67 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFI+P+ + G DVF H SA++++G +L E Q V +D Q Sbjct: 1 MTTGTVKWFNADKGFGFISPD---DGGADVFAHFSAISASGFRSLDENQKVEFDITQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPL 67 >gi|33598908|ref|NP_886551.1| putative cold shock-like protein [Bordetella parapertussis 12822] gi|33603987|ref|NP_891547.1| putative cold shock-like protein [Bordetella bronchiseptica RB50] gi|33568963|emb|CAE35377.1| putative cold shock-like protein [Bordetella bronchiseptica RB50] gi|33575038|emb|CAE39704.1| putative cold shock-like protein [Bordetella parapertussis] Length = 68 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V ++ V++ Sbjct: 1 MAQKGKVKWFNADKGYGFITPDS---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56 Query: 61 ANGKYSAE 68 G +AE Sbjct: 57 PKGPQAAE 64 >gi|27379238|ref|NP_770767.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27352389|dbj|BAC49392.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 68 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 41/72 (56%), Positives = 49/72 (68%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+NP KGYGFI P GS DVF+H SAV AGL L E Q+V YD V+N Sbjct: 1 MPQKGTVKWFNPTKGYGFIKPNGSD---KDVFVHISAVERAGLSTLNENQVVEYDLVEN- 56 Query: 61 ANGKYSAENLKL 72 GK SAENLK+ Sbjct: 57 -RGKSSAENLKV 67 >gi|115525288|ref|YP_782199.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115519235|gb|ABJ07219.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisA53] Length = 67 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + Y+ V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TSGDKDVFVHISAVERAGLSTLNENQPIEYELVEN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKI 66 >gi|237730609|ref|ZP_04561090.1| cold shock protein CspE [Citrobacter sp. 30_2] gi|226906148|gb|EEH92066.1| cold shock protein CspE [Citrobacter sp. 30_2] Length = 100 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ N A G Sbjct: 36 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 91 Query: 64 KYSAENLKL 72 +A + L Sbjct: 92 PSAANVIAL 100 >gi|119718488|ref|YP_925453.1| cold-shock DNA-binding protein family protein [Nocardioides sp. JS614] gi|119539149|gb|ABL83766.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614] Length = 67 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E + GDDVF+H SA+ + G +L E Q V +D Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAQE---DGGDDVFVHYSAIQTQGYKSLDENQKVEFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENVRPI 67 >gi|324997373|ref|ZP_08118485.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia sp. P1] Length = 67 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFITP+G G D+F+H SA+ S+G +L EGQ VT++ Q Sbjct: 1 MPQGTVKWFNAEKGYGFITPDG---GGQDLFVHFSAIQSSGYRSLDEGQAVTFEVTQGQ- 56 Query: 62 NGKYSAENL 70 G + + + Sbjct: 57 KGPQADQVV 65 >gi|317401626|gb|EFV82252.1| cold shock protein [Achromobacter xylosoxidans C54] Length = 68 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V ++ V++ Sbjct: 1 MAQKGKVKWFNADKGYGFITPDA---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56 Query: 61 ANGKYSAE 68 G +AE Sbjct: 57 PKGPQAAE 64 >gi|91209672|ref|YP_539658.1| cold shock protein CspE [Escherichia coli UTI89] gi|237707404|ref|ZP_04537885.1| cold shock protein E [Escherichia sp. 3_2_53FAA] gi|332281760|ref|ZP_08394173.1| cold shock protein E [Shigella sp. D9] gi|26107003|gb|AAN79187.1|AE016757_91 Cold shock-like protein cspE [Escherichia coli CFT073] gi|91071246|gb|ABE06127.1| cold shock-like protein CspE [Escherichia coli UTI89] gi|226898614|gb|EEH84873.1| cold shock protein E [Escherichia sp. 3_2_53FAA] gi|332104112|gb|EGJ07458.1| cold shock protein E [Shigella sp. D9] Length = 97 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ N A G Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 88 Query: 64 KYSAENLKL 72 +A + L Sbjct: 89 PSAANVIAL 97 >gi|86749297|ref|YP_485793.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris HaA2] gi|91977723|ref|YP_570382.1| cold-shock protein, DNA-binding [Rhodopseudomonas palustris BisB5] gi|86572325|gb|ABD06882.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris HaA2] gi|91684179|gb|ABE40481.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB5] Length = 69 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + G+DVF+H SAV AGL L EGQ V ++ + Sbjct: 1 MPTGTVKWFNGQKGFGFIAP---NDGGNDVFVHISAVERAGLSGLAEGQKVNFELKTDKM 57 Query: 62 NGKYSAENLKLV 73 GK SAENL+LV Sbjct: 58 RGKTSAENLELV 69 >gi|192292246|ref|YP_001992851.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] gi|192285995|gb|ACF02376.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] Length = 69 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P ++ G+DVF+H SAV AGL L EGQ V+++ + Sbjct: 1 MTTGTVKWFNGQKGFGFIAP---SDGGNDVFVHISAVERAGLTGLAEGQKVSFEVKTDKM 57 Query: 62 NGKYSAENLKL 72 GK SAENL L Sbjct: 58 RGKSSAENLAL 68 >gi|162147832|ref|YP_001602293.1| cold-shock DNA-binding domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209542453|ref|YP_002274682.1| cold-shock DNA-binding domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786409|emb|CAP55991.1| putative cold-shock DNA-binding domain protein [Gluconacetobacter diazotrophicus PAl 5] gi|209530130|gb|ACI50067.1| cold-shock DNA-binding domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 67 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE + G DVF+H +AV +AGL L E Q V+YD V Sbjct: 1 MATGTVKWFNATKGFGFIMPE---DGGKDVFVHITAVQAAGLRGLNENQRVSYDVVTE-- 55 Query: 62 NGKYSAENLKLV 73 GK +A NLK + Sbjct: 56 RGKAAASNLKPL 67 >gi|90423823|ref|YP_532193.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90105837|gb|ABD87874.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB18] Length = 67 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + Y+ V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TTGDKDVFVHISAVERAGLSTLNENQTIEYELVEN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKI 66 >gi|163850615|ref|YP_001638658.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218529339|ref|YP_002420155.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240137664|ref|YP_002962135.1| cold shock DNA binding protein CspA [Methylobacterium extorquens AM1] gi|254560234|ref|YP_003067329.1| cold shock DNA binding protein CspA [Methylobacterium extorquens DM4] gi|163662220|gb|ABY29587.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218521642|gb|ACK82227.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240007632|gb|ACS38858.1| cold shock DNA binding protein CspA [Methylobacterium extorquens AM1] gi|254267512|emb|CAX23354.1| cold shock DNA binding protein CspA [Methylobacterium extorquens DM4] Length = 69 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ G DVF+H SAV AGL +L EGQ VTY+ + Sbjct: 1 MATGTVKWFNETKGYGFIQPD---NGGKDVFVHISAVERAGLRDLAEGQKVTYEVEIDRK 57 Query: 62 NGKYSAENLKL 72 +GK SA L++ Sbjct: 58 SGKESAGQLQV 68 >gi|86356213|ref|YP_468105.1| cold shock protein [Rhizobium etli CFN 42] gi|86280315|gb|ABC89378.1| cold shock protein [Rhizobium etli CFN 42] Length = 69 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ + DVF+H SAV AG+ +L +GQ ++YD V+++ Sbjct: 1 MNTGTVKWFNATKGFGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYDLVRDNK 57 Query: 62 NGKYSAENLK 71 +GK SA+ L+ Sbjct: 58 SGKMSADRLQ 67 >gi|163853346|ref|YP_001641389.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218532203|ref|YP_002423019.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240140762|ref|YP_002965242.1| cold shock protein A [Methylobacterium extorquens AM1] gi|254563272|ref|YP_003070367.1| cold shock protein A [Methylobacterium extorquens DM4] gi|163664951|gb|ABY32318.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218524506|gb|ACK85091.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240010739|gb|ACS41965.1| cold shock protein A [Methylobacterium extorquens AM1] gi|254270550|emb|CAX26553.1| cold shock protein A [Methylobacterium extorquens DM4] Length = 69 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ KGYGFI P+ G DVF+H SAV AGL L EGQ V++D + Sbjct: 1 MQTGTVKWFDEVKGYGFIQPDT---GGKDVFVHISAVQQAGLRGLVEGQKVSFDVENDRR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKPAAVNLQ 67 >gi|290510381|ref|ZP_06549751.1| cold shock protein (beta-ribbon, CspA family) [Klebsiella sp. 1_1_55] gi|289777097|gb|EFD85095.1| cold shock protein (beta-ribbon, CspA family) [Klebsiella sp. 1_1_55] Length = 97 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ N A G Sbjct: 33 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 88 Query: 64 KYSAENLKL 72 +A + + Sbjct: 89 PSAANVMAI 97 >gi|91784982|ref|YP_560188.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|187925141|ref|YP_001896783.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|209517460|ref|ZP_03266301.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295677450|ref|YP_003605974.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|296157173|ref|ZP_06840009.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|307730770|ref|YP_003907994.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1003] gi|323527133|ref|YP_004229286.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1001] gi|91688936|gb|ABE32136.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] gi|187716335|gb|ACD17559.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|209502114|gb|EEA02129.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295437293|gb|ADG16463.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|295892509|gb|EFG72291.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|307585305|gb|ADN58703.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003] gi|323384135|gb|ADX56226.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001] Length = 68 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ VT++ VQ Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVTFEVVQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|219882627|ref|YP_002477791.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|219861633|gb|ACL41974.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] Length = 67 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+ + DVF H SA+AS+G +L E Q V +D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAPD---DGSADVFAHYSAIASSGYRSLDENQKVQFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIQPL 67 >gi|298291123|ref|YP_003693062.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296927634|gb|ADH88443.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 70 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KGYGFI P+ G DVF+H SAV +GL L +G+ ++++ + Sbjct: 1 MADTGTVKWFNEQKGYGFIQPDS---GGKDVFVHISAVQRSGLQGLRDGEKISFELQTDQ 57 Query: 61 ANGKYSAENLKLV 73 +GK SA NL+ + Sbjct: 58 RSGKTSAVNLRPL 70 >gi|83593249|ref|YP_427001.1| cold-shock DNA-binding protein family protein [Rhodospirillum rubrum ATCC 11170] gi|83576163|gb|ABC22714.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC 11170] Length = 68 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G D F+H +A+ AG+ +L EGQ VTYD + Sbjct: 1 MSTGTVKWFNTTKGFGFIAPD---NGGADAFVHITALERAGIHSLNEGQRVTYDL-EMGR 56 Query: 62 NGKYSAENLKL 72 GK +A N++L Sbjct: 57 TGKMAAINIRL 67 >gi|116494185|ref|YP_805919.1| cold shock protein [Lactobacillus casei ATCC 334] gi|191637512|ref|YP_001986678.1| Cold shock protein A [Lactobacillus casei BL23] gi|199597005|ref|ZP_03210438.1| Cold shock protein [Lactobacillus rhamnosus HN001] gi|227534311|ref|ZP_03964360.1| CspA family cold shock transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|229553636|ref|ZP_04442361.1| CspA family cold shock transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|239629560|ref|ZP_04672591.1| cold-shock DNA-binding family protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|258507603|ref|YP_003170354.1| cold shock protein [Lactobacillus rhamnosus GG] gi|258538778|ref|YP_003173277.1| Cold shock protein [Lactobacillus rhamnosus Lc 705] gi|301065674|ref|YP_003787697.1| cold shock protein [Lactobacillus casei str. Zhang] gi|40644037|emb|CAD92346.1| cold shock protein A [Lactobacillus casei] gi|116104335|gb|ABJ69477.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC 334] gi|190711814|emb|CAQ65820.1| Cold shock protein A [Lactobacillus casei BL23] gi|199592138|gb|EDZ00212.1| Cold shock protein [Lactobacillus rhamnosus HN001] gi|205270982|emb|CAP07854.1| cold-shock protein [Lactobacillus casei BL23] gi|227188035|gb|EEI68102.1| CspA family cold shock transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|229313014|gb|EEN78987.1| CspA family cold shock transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|239528246|gb|EEQ67247.1| cold-shock DNA-binding family protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|257147530|emb|CAR86503.1| Cold shock protein [Lactobacillus rhamnosus GG] gi|257150454|emb|CAR89426.1| Cold shock protein [Lactobacillus rhamnosus Lc 705] gi|259648959|dbj|BAI41121.1| cold shock protein [Lactobacillus rhamnosus GG] gi|300438081|gb|ADK17847.1| Cold shock protein [Lactobacillus casei str. Zhang] gi|327381559|gb|AEA53035.1| Cold-shock domain family protein [Lactobacillus casei LC2W] gi|327384722|gb|AEA56196.1| Cold-shock domain family protein [Lactobacillus casei BD-II] gi|328476231|gb|EGF46922.1| cold shock protein [Lactobacillus rhamnosus MTCC 5462] Length = 66 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKGYGFIT E G DVF+H SA+ G +L EGQ V+YD Q+D Sbjct: 1 MQKGTVKWFNADKGYGFIT----GEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSD- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAANVTKL 66 >gi|226311427|ref|YP_002771321.1| cold shock protein [Brevibacillus brevis NBRC 100599] gi|226094375|dbj|BAH42817.1| cold shock protein [Brevibacillus brevis NBRC 100599] Length = 66 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI E GDDVF+H SA+ S G +L EGQ V ++ VQ + Sbjct: 1 MQQGIVKWFNAEKGYGFIQVE----GGDDVFVHYSAIQSEGFKSLDEGQKVEFEIVQG-S 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAASVTKL 66 >gi|254502104|ref|ZP_05114255.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] gi|222438175|gb|EEE44854.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] Length = 69 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KGYGFI PE + +DVF+H SAV AGL L EG V+++ VQ+ Sbjct: 1 MTIGTVKFFNSTKGYGFIQPE---DGSNDVFVHISAVERAGLATLNEGDKVSFEVVQDRR 57 Query: 62 NGKYSAENLK 71 +GK +A+NL Sbjct: 58 SGKSAADNLS 67 >gi|190890260|ref|YP_001976802.1| cold shock protein [Rhizobium etli CIAT 652] gi|218509122|ref|ZP_03507000.1| cold shock protein [Rhizobium etli Brasil 5] gi|218513064|ref|ZP_03509904.1| cold shock protein [Rhizobium etli 8C-3] gi|218672806|ref|ZP_03522475.1| cold shock protein [Rhizobium etli GR56] gi|190695539|gb|ACE89624.1| cold shock protein [Rhizobium etli CIAT 652] gi|327190777|gb|EGE57846.1| cold shock protein [Rhizobium etli CNPAF512] Length = 69 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ + DVF+H SAV AG+ +L +GQ ++Y+ V+++ Sbjct: 1 MNTGTVKWFNATKGFGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYELVRDNK 57 Query: 62 NGKYSAENLK 71 +GK SA+ L+ Sbjct: 58 SGKMSADRLQ 67 >gi|325291550|ref|YP_004277414.1| cold shock protein [Agrobacterium sp. H13-3] gi|325059403|gb|ADY63094.1| cold shock protein [Agrobacterium sp. H13-3] Length = 69 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + DVF+H SAV AG+ +L +GQ ++Y+ Q+ Sbjct: 1 MATGTVKWFNATKGYGFIQPD---DGSQDVFVHISAVERAGMTSLNDGQKLSYELTQDRR 57 Query: 62 NGKYSAENL 70 +GK SA L Sbjct: 58 SGKMSAGEL 66 >gi|114764472|ref|ZP_01443697.1| cold shock family protein [Pelagibaca bermudensis HTCC2601] gi|114543039|gb|EAU46058.1| cold shock family protein [Roseovarius sp. HTCC2601] Length = 68 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PEG DVF+H SA+ +GL L + Q V+Y+ Q+ Sbjct: 1 MPTGTVKWFNTTKGYGFIAPEG---GSKDVFVHISALERSGLTELKDNQKVSYEL-QSGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA NL+L+ Sbjct: 57 DGRESAINLELL 68 >gi|294085741|ref|YP_003552501.1| cold-shock DNA-binding domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292665316|gb|ADE40417.1| Cold-shock DNA-binding domain protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 76 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 35/73 (47%), Positives = 52/73 (71%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFI P+ +SG+DVF+H +AV ++GL L EGQ VTY+ + Sbjct: 8 MSQGTVKWFNTQKGYGFIDPD---DSGNDVFVHITAVQNSGLNGLNEGQKVTYEL-EEQR 63 Query: 62 NGKYSAENLKLVP 74 NGK +A NL++V Sbjct: 64 NGKMAAVNLEVVE 76 >gi|319405285|emb|CBI78899.1| cold shock protein [Bartonella sp. AR 15-3] Length = 69 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P + DVF+H SA+ +GL +L EGQ ++YD +Q+ Sbjct: 1 MSTGTVKWFNTNKGFGFIQP---NDGSADVFVHISALERSGLHDLNEGQKISYDILQDRR 57 Query: 62 NGKYSAENLKLV 73 +GK+SA NL + Sbjct: 58 SGKFSAGNLSAL 69 >gi|220933359|ref|YP_002512258.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994669|gb|ACL71271.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 67 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G DVF+H SA++ +G L E Q V++D VQ+ Sbjct: 1 MATGTVKWFNESKGFGFITPD---DGGKDVFVHFSAISGSGFKTLAENQKVSFD-VQDGP 56 Query: 62 NGKYSAENL 70 G +A + Sbjct: 57 KGPQAANVV 65 >gi|254418731|ref|ZP_05032455.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp. BAL3] gi|196184908|gb|EDX79884.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp. BAL3] Length = 70 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP KGYGFI P+ + G DVF+H SAV AGL L E Q V+Y+ ++ Sbjct: 1 MATGTVKWFNPTKGYGFIQPD---DGGKDVFVHISAVEGAGLRGLDENQKVSYELERDKR 57 Query: 62 NGKYSAENLKLV 73 +GK SA L+ + Sbjct: 58 SGKESAGQLQTI 69 >gi|319898519|ref|YP_004158612.1| cold shock protein [Bartonella clarridgeiae 73] gi|319402483|emb|CBI76026.1| cold shock protein [Bartonella clarridgeiae 73] Length = 69 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + DVF+H SAV +GL +L EGQ ++YD +Q+ Sbjct: 1 MSTGTVKWFNTTKGFGFIQP---NDGSADVFVHISAVERSGLNDLNEGQKISYDVLQDRR 57 Query: 62 NGKYSAENLKLV 73 +GK++A NL + Sbjct: 58 SGKFAAGNLSAL 69 >gi|134100407|ref|YP_001106068.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291007339|ref|ZP_06565312.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|133913030|emb|CAM03143.1| cold-shock DNA-binding domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 67 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFITP+G G DVF H SA+ + G L E Q V ++ Q Sbjct: 1 MATGTVKWFNAEKGFGFITPDG---GGADVFAHYSAIDATGFRTLDENQRVEFEIAQG-P 56 Query: 62 NGKYSAE 68 G +A+ Sbjct: 57 KGPQAAQ 63 >gi|188583612|ref|YP_001927057.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] gi|179347110|gb|ACB82522.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] Length = 69 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW++ KGYGFI P+ G DVF+H SAV AGL L EGQ VT+D + Sbjct: 1 MNTGTVKWFDEIKGYGFIQPDT---GGKDVFVHISAVQQAGLRGLVEGQKVTFDVENDRR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKPAAVNLQ 67 >gi|88856605|ref|ZP_01131262.1| cold shock protein [marine actinobacterium PHSC20C1] gi|88814259|gb|EAR24124.1| cold shock protein [marine actinobacterium PHSC20C1] Length = 67 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI PE + DVF H SA+A+ G +L E Q V +D Q Sbjct: 1 MALGTVKWFNAEKGFGFIAPE---DGSPDVFAHYSAIATNGYKSLDENQKVEFDITQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPI 67 >gi|284990416|ref|YP_003408970.1| cold-shock DNA-binding domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284063661|gb|ADB74599.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus DSM 43160] Length = 67 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GF TP+G G DVF+H SA+ ++G +L EGQ +++D Q Sbjct: 1 MPEGTVKWFNAEKGFGFATPDG---GGPDVFVHYSAIQTSGYRSLDEGQRISFDIEQGQ- 56 Query: 62 NGKYSAEN 69 G +A Sbjct: 57 KGPQAANV 64 >gi|119898894|ref|YP_934107.1| cold shock-like protein [Azoarcus sp. BH72] gi|119671307|emb|CAL95220.1| cold shock-like protein [Azoarcus sp. BH72] Length = 67 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITPE G+D+F H SA+ +G +L EGQ V ++ + Sbjct: 1 MATGTVKWFNDAKGFGFITPE---NGGEDLFAHFSAIQGSGFKSLAEGQRVEFEITRGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--QQASNIRPL 67 >gi|260597282|ref|YP_003209853.1| Cold shock-like protein cspD [Cronobacter turicensis z3032] gi|260216459|emb|CBA29590.1| Cold shock-like protein cspD [Cronobacter turicensis z3032] Length = 99 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 24 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQVVRFDVHQG-P 79 Query: 62 NGKYSAENLKLVPKSSN 78 G +++ +VP + Sbjct: 80 KGNHASV---IVPLEAE 93 >gi|331699456|ref|YP_004335695.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326954145|gb|AEA27842.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans CB1190] Length = 67 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI T+ G DVF+H SA+ + G L EG V ++ Sbjct: 1 MAQGTVKWFNSEKGYGFIA----TDGGPDVFVHYSAIQADGFRTLDEGDRVEFE-TTAGR 55 Query: 62 NGKYSAENLKLV 73 +G+ AE ++ + Sbjct: 56 DGRSQAEAVRRI 67 >gi|238062414|ref|ZP_04607123.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|237884225|gb|EEP73053.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] Length = 67 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFI+P+G G DVF H SA++++G +L E Q V +D Q Sbjct: 1 MTTGTVKWFNADKGFGFISPDG---GGADVFAHFSAISASGFRSLDENQKVEFDITQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPL 67 >gi|212639316|ref|YP_002315836.1| cold shock protein, CspA family [Anoxybacillus flavithermus WK1] gi|212560796|gb|ACJ33851.1| Cold shock protein, CspA family [Anoxybacillus flavithermus WK1] Length = 66 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI E GDDVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQNGKVKWFNNEKGYGFIEVE----GGDDVFVHFTAIQGEGYKTLEEGQAVSFEIVQGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|186475334|ref|YP_001856804.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184191793|gb|ACC69758.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 68 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ VQ Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQMNGFKTLKEGQKVSFEVVQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|293602670|ref|ZP_06685111.1| CspA family cold shock transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|311109651|ref|YP_003982504.1| cold shock protein CspB [Achromobacter xylosoxidans A8] gi|292818861|gb|EFF77901.1| CspA family cold shock transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|310764340|gb|ADP19789.1| cold shock protein CspB [Achromobacter xylosoxidans A8] Length = 68 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V ++ V++ Sbjct: 1 MAQKGKVKWFNADKGYGFITPDV---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56 Query: 61 ANGKYSAE 68 G +AE Sbjct: 57 PKGPQAAE 64 >gi|258590957|emb|CBE67252.1| Cold shock protein, DNA binding [NC10 bacterium 'Dutch sediment'] Length = 68 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KGYGFI E GDDVF+H SA++ +G +L EGQ V +D V + Sbjct: 1 MRVTGTVKWFNDAKGYGFIARE----DGDDVFVHYSAISGSGFRSLNEGQAVEFDVV-DG 55 Query: 61 ANGKYSAENLK 71 GK +A + Sbjct: 56 PKGKQAANVTR 66 >gi|83592856|ref|YP_426608.1| cold-shock DNA-binding protein family protein [Rhodospirillum rubrum ATCC 11170] gi|83575770|gb|ABC22321.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC 11170] Length = 68 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + DVF+H +AV AGL +L EGQ V ++ + Sbjct: 1 MSTGTVKWFNGTKGYGFIEPD---DGSADVFVHITAVQQAGLDSLREGQKVAFEL-ERGR 56 Query: 62 NGKYSAENLKLV 73 +GK +A NLK + Sbjct: 57 SGKMAASNLKPL 68 >gi|134099205|ref|YP_001104866.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291009987|ref|ZP_06567960.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|133911828|emb|CAM01941.1| cold-shock DNA-binding domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 67 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+ G DVF+H SA+ S G +L E Q VTYD Q Sbjct: 1 MTQGTVKWFNSEKGFGFIAPDA---GGPDVFVHYSAIDSTGFRSLEENQQVTYDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AE ++ + Sbjct: 58 G--PQAEVVRAL 67 >gi|269792002|ref|YP_003316906.1| cold-shock DNA-binding domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099637|gb|ACZ18624.1| cold-shock DNA-binding domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 67 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N KGYGFIT T+ G DVF H SA+ G L EGQ V+ D V+ Sbjct: 1 MATQGTVKWFNATKGYGFIT----TDEGRDVFCHFSAIKMDGYRTLEEGQRVSLD-VEMG 55 Query: 61 ANGKYSAENLKL 72 G+ +A +KL Sbjct: 56 PKGEQAANVVKL 67 >gi|42784343|ref|NP_981590.1| cold shock protein CspC [Bacillus cereus ATCC 10987] gi|206976819|ref|ZP_03237722.1| cold shock protein CspC [Bacillus cereus H3081.97] gi|217962672|ref|YP_002341246.1| cold shock protein CspC [Bacillus cereus AH187] gi|222098643|ref|YP_002532701.1| cold shock protein cspc [Bacillus cereus Q1] gi|42740274|gb|AAS44198.1| cold shock protein CspC [Bacillus cereus ATCC 10987] gi|206744954|gb|EDZ56358.1| cold shock protein CspC [Bacillus cereus H3081.97] gi|217063489|gb|ACJ77739.1| cold shock protein CspC [Bacillus cereus AH187] gi|221242702|gb|ACM15412.1| cold shock protein CspC [Bacillus cereus Q1] gi|324329136|gb|ADY24396.1| cold shock protein CspC [Bacillus thuringiensis serovar finitimus YBT-020] Length = 67 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V+ Sbjct: 1 MNMQGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVEG- 55 Query: 61 ANGKYSAENLKL 72 A G +A +KL Sbjct: 56 ARGPQAANVVKL 67 >gi|21957922|gb|AAM84743.1|AE013720_7 cold shock protein [Yersinia pestis KIM 10] gi|45435809|gb|AAS61366.1| putative cold shock protein [Yersinia pestis biovar Microtus str. 91001] Length = 84 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ N A G Sbjct: 20 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFEIT-NGAKG 75 Query: 64 KYSAENLKL 72 +A + + Sbjct: 76 PSAANVIAI 84 >gi|188583863|ref|YP_001927308.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] gi|179347361|gb|ACB82773.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] Length = 69 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE + DVF+H SAV AGL L EGQ V+Y+ + Sbjct: 1 MSTGTVKWFNEQKGFGFIQPE---DGSKDVFVHISAVERAGLRGLAEGQKVSYELETDRR 57 Query: 62 NGKYSAENLKL 72 +GK SA L++ Sbjct: 58 SGKQSAGQLQV 68 >gi|302868803|ref|YP_003837440.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029] gi|315504727|ref|YP_004083614.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|302571662|gb|ADL47864.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC 27029] gi|315411346|gb|ADU09463.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] Length = 67 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ S+G L EGQ V ++ Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFVHYSAIQSSGYRELNEGQKVEFEVTQGQK 57 Query: 62 NGKYSAENLKLV 73 A+N++ + Sbjct: 58 G--PQADNVRPM 67 >gi|119383705|ref|YP_914761.1| cold-shock DNA-binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119373472|gb|ABL69065.1| cold-shock DNA-binding protein family [Paracoccus denitrificans PD1222] Length = 68 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H SAV AGL L + Q + Y+ Q+ Sbjct: 1 MATGTVKWFNATKGYGFIAPD---DGGKDVFVHISAVERAGLTGLNDNQKIAYEL-QSGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA +LKL+ Sbjct: 57 DGRSSASDLKLL 68 >gi|75675791|ref|YP_318212.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255] gi|74420661|gb|ABA04860.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi Nb-255] Length = 67 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + YD V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIKP---TTGDRDVFVHISAVERAGLSTLDENQTIEYDLVEN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKI 66 >gi|21222688|ref|NP_628467.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|302559987|ref|ZP_07312329.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] gi|8248794|emb|CAB93055.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|11933021|emb|CAC19350.1| cold-shock like protein [Streptomyces coelicolor] gi|302477605|gb|EFL40698.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 67 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ ++L Sbjct: 57 G--PQADMVRL 65 >gi|329889214|ref|ZP_08267557.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC 11568] gi|328844515|gb|EGF94079.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC 11568] Length = 70 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H SAV AGL L E Q V+Y+ ++ Sbjct: 1 MATGTVKWFNSTKGYGFIQPD---DGGKDVFVHISAVEQAGLRGLDENQKVSYEIERDRR 57 Query: 62 NGKYSAENLK 71 +GK SA LK Sbjct: 58 SGKESAGQLK 67 >gi|284989363|ref|YP_003407917.1| cold-shock DNA-binding domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284062608|gb|ADB73546.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus DSM 43160] Length = 66 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI + G DVF+H SA+ G +L EGQ VT++ VQ + Sbjct: 1 MAQGTVKWFNAEKGFGFIAVD----GGQDVFVHYSAIQMDGYKSLDEGQRVTFEVVQGEK 56 Query: 62 NGKYSAE 68 + A Sbjct: 57 GPQADAV 63 >gi|223946111|gb|ACN27139.1| unknown [Zea mays] Length = 187 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 RG++KW+N KG+GFI+PE + +D+F+H+S++ S G +L EG+ V + + D Sbjct: 6 RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61 Query: 62 NGKYSAENLK 71 +G+ A ++ Sbjct: 62 DGRTKAVDVT 71 >gi|260432172|ref|ZP_05786143.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416000|gb|EEX09259.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 68 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G DVF+H SA+ +GL L + Q VTYD VQ+ Sbjct: 1 MANGTVKWFNTTKGFGFIAPET---GGKDVFVHISALERSGLTGLADNQKVTYD-VQSGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SAENL+LV Sbjct: 57 DGRESAENLQLV 68 >gi|167648239|ref|YP_001685902.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp. K31] gi|167350669|gb|ABZ73404.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31] Length = 68 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ +TY+ +++ Sbjct: 1 MATGTVKWFNGTKGFGFIQPD---DGGADVFVHISAVERAGLRGLDEGQKITYELERDNR 57 Query: 62 NGKYSAENLK 71 +GK SA L+ Sbjct: 58 SGKMSAGQLQ 67 >gi|319406855|emb|CBI80490.1| cold shock protein [Bartonella sp. 1-1C] Length = 69 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P + DVF+H SAV +GL NL EGQ ++YD +Q+ Sbjct: 1 MSKGTVKWFNSNKGFGFIQP---NDGSADVFVHISAVERSGLQNLNEGQKISYDVLQDRR 57 Query: 62 NGKYSAENLKLV 73 +GK++A NL + Sbjct: 58 SGKFAAGNLSAL 69 >gi|302335495|ref|YP_003800702.1| cold-shock DNA-binding protein family [Olsenella uli DSM 7084] gi|301319335|gb|ADK67822.1| cold-shock DNA-binding protein family [Olsenella uli DSM 7084] Length = 67 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NPDKGYGFI+ E GDD+F+H S + G L EGQ V +D Sbjct: 1 MAQGTVKWFNPDKGYGFISRE----DGDDLFVHYSEIQMDGFKTLDEGQAVEFDIT-TGQ 55 Query: 62 NGKYSAENLK 71 NGK A N++ Sbjct: 56 NGKLQASNVR 65 >gi|209884462|ref|YP_002288319.1| hypothetical protein OCAR_5322 [Oligotropha carboxidovorans OM5] gi|209872658|gb|ACI92454.1| conserved domain protein [Oligotropha carboxidovorans OM5] Length = 69 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + G+DVF+H SAV AGL L EGQ V ++ ++ Sbjct: 1 MTIGTVKWFNGQKGFGFIAP---QDGGNDVFVHISAVERAGLTGLAEGQKVEFEAKTDNM 57 Query: 62 NGKYSAENLKLV 73 GK SAENL LV Sbjct: 58 RGKTSAENLSLV 69 >gi|116250366|ref|YP_766204.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|209547826|ref|YP_002279743.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|218658368|ref|ZP_03514298.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771] gi|241203000|ref|YP_002974096.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115255014|emb|CAK06088.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|209533582|gb|ACI53517.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240856890|gb|ACS54557.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 69 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 49/70 (70%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + DVF+H SAV AG+ +L +GQ ++Y+ V+++ Sbjct: 1 MSTGTVKWFNATKGFGFIQPD---DGAADVFVHISAVERAGMRDLKDGQKLSYELVRDNK 57 Query: 62 NGKYSAENLK 71 +GK SA+ L+ Sbjct: 58 SGKMSADRLQ 67 >gi|115375489|ref|ZP_01462749.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|310821373|ref|YP_003953731.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1] gi|2493774|sp|P72366|CSPA_STIAD RecName: Full=Cold shock-like protein CspA gi|1616777|gb|AAB16850.1| cold shock-like protein [Stigmatella aurantiaca DW4/3-1] gi|115367532|gb|EAU66507.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|309394445|gb|ADO71904.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1] Length = 68 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 5/73 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +G G+DVF H SA+ G L EGQ V ++ + Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHSAINMDGFRTLQEGQKVEFEVTRGPK 57 Query: 62 NGKYSAENLKLVP 74 A+N++ +P Sbjct: 58 G--LQAQNVRSIP 68 >gi|27377058|ref|NP_768587.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|12620649|gb|AAG60925.1|AF322013_44 ID534 [Bradyrhizobium japonicum] gi|27350201|dbj|BAC47212.1| blr1947 [Bradyrhizobium japonicum USDA 110] Length = 120 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP KGYGF+ P+ + G DVF+H SAV AG +L EG V Y+ V N +GK Sbjct: 56 GTVKWFNPTKGYGFVAPD---DGGKDVFVHISAVEKAGYTSLVEGAKVGYELVTN-RSGK 111 Query: 65 YSAENLKL 72 +AENL+L Sbjct: 112 QAAENLRL 119 >gi|315641419|ref|ZP_07896492.1| cold shock protein CspA [Enterococcus italicus DSM 15952] gi|315482806|gb|EFU73329.1| cold shock protein CspA [Enterococcus italicus DSM 15952] Length = 72 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFIT E G DVF+H SA+ G L EGQ VT+D ++D Sbjct: 7 MEQGTVKWFNAEKGFGFITRE----DGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESD- 61 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 62 RGPQATNVVK 71 >gi|92118897|ref|YP_578626.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91801791|gb|ABE64166.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 69 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G G+DVF+H SAV AGL L EGQ V+++ + Sbjct: 1 MSTGTVKWFNSQKGFGFIQPDG---GGNDVFVHISAVQRAGLNGLGEGQKVSFETKTDKM 57 Query: 62 NGKYSAENLKL 72 GK SAENL L Sbjct: 58 RGKASAENLSL 68 >gi|319403844|emb|CBI77430.1| cold shock protein [Bartonella rochalimae ATCC BAA-1498] Length = 69 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P + DVF+H SAV +GL NL EGQ ++YD +Q+ Sbjct: 1 MSKGTVKWFNTNKGFGFIQP---NDGSADVFVHISAVERSGLHNLNEGQKISYDVLQDRR 57 Query: 62 NGKYSAENLKLV 73 +GK++A NL + Sbjct: 58 SGKFAAGNLSAL 69 >gi|126731182|ref|ZP_01746990.1| cold shock family protein [Sagittula stellata E-37] gi|126708484|gb|EBA07542.1| cold shock family protein [Sagittula stellata E-37] Length = 68 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V+Y+ Q Sbjct: 1 MAKGTVKWFNTTKGYGFIQPD---EGGKDVFVHISAVERSGLTGLADNQKVSYEL-QTGR 56 Query: 62 NGKYSAENLKLV 73 +GK SA NL+L+ Sbjct: 57 DGKQSAGNLELL 68 >gi|159036600|ref|YP_001535853.1| cold-shock DNA-binding domain-containing protein [Salinispora arenicola CNS-205] gi|157915435|gb|ABV96862.1| cold-shock DNA-binding domain protein [Salinispora arenicola CNS-205] Length = 67 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFI+P+G G DVF H SA++++G +L E Q V ++ Q Sbjct: 1 MATGTVKWFNADKGFGFISPDG---GGADVFAHFSAISASGFRSLDENQKVEFEITQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPL 67 >gi|33594722|ref|NP_882366.1| putative cold shock-like protein [Bordetella pertussis Tohama I] gi|33564798|emb|CAE44126.1| putative cold shock-like protein [Bordetella pertussis Tohama I] gi|332384133|gb|AEE68980.1| putative cold shock-like protein [Bordetella pertussis CS] Length = 68 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N DKGYGFITP+ G DVF H SA+ G +L EGQ V ++ V++ Sbjct: 1 MAQKGKVKWFNADKGYGFITPDS---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDV 56 Query: 61 ANGKYSAE 68 G +AE Sbjct: 57 PKGPQAAE 64 >gi|229032808|ref|ZP_04188764.1| hypothetical protein bcere0028_48380 [Bacillus cereus AH1271] gi|228728481|gb|EEL79501.1| hypothetical protein bcere0028_48380 [Bacillus cereus AH1271] Length = 67 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + Sbjct: 1 MNMQGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55 Query: 61 ANGKYSAENLKL 72 A G +A +KL Sbjct: 56 ARGPQAANVIKL 67 >gi|260461754|ref|ZP_05810000.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|319785303|ref|YP_004144779.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032395|gb|EEW33660.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|317171191|gb|ADV14729.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 70 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ + Y+ Q+ Sbjct: 1 MATGTVKWFNSTKGFGFIQPD---NGGQDVFVHISAVERAGLSTLNEGQKINYEVEQDRR 57 Query: 62 NGKYSAENLK 71 GK SA +L Sbjct: 58 TGKSSAGSLS 67 >gi|163840196|ref|YP_001624601.1| cold shock protein [Renibacterium salmoninarum ATCC 33209] gi|162953672|gb|ABY23187.1| cold shock protein [Renibacterium salmoninarum ATCC 33209] Length = 100 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFITP+ S DVF+H S + + G L E Q V ++ Q Sbjct: 33 MAQGTVKWFNAEKGFGFITPDESPN---DVFVHYSEIQTKGFRTLDENQRVEFEIGQGAK 89 Query: 62 NGKYSAENL 70 + + N+ Sbjct: 90 GPQATGVNV 98 >gi|114326681|ref|YP_743838.1| cold shock protein [Granulibacter bethesdensis CGDNIH1] gi|114314855|gb|ABI60915.1| cold shock protein [Granulibacter bethesdensis CGDNIH1] Length = 83 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KGYGFI P+G G DVF+H SAV AGL L +GQ +++D + Sbjct: 15 LMPTGTVKWFNATKGYGFIHPDG---GGADVFVHISAVEKAGLSKLDDGQKLSFDL-EAG 70 Query: 61 ANGKYSAENLKL 72 GK SA NLKL Sbjct: 71 RQGKTSAVNLKL 82 >gi|254388506|ref|ZP_05003740.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|294814077|ref|ZP_06772720.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|326442478|ref|ZP_08217212.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|197702227|gb|EDY48039.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|294326676|gb|EFG08319.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064] Length = 67 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ +KL Sbjct: 57 G--PQADMVKL 65 >gi|317123476|ref|YP_004097588.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] gi|315587564|gb|ADU46861.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] Length = 67 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 3/67 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI +G G DVF+H SA+ S G +L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAIQSNGYRSLDEAQRVEFEVTQGPK 57 Query: 62 NGKYSAE 68 + A Sbjct: 58 GPQADAV 64 >gi|30023224|ref|NP_834855.1| cold shock protein [Bacillus cereus ATCC 14579] gi|47567403|ref|ZP_00238116.1| cold shock protein-related protein [Bacillus cereus G9241] gi|47568473|ref|ZP_00239173.1| cold shock protein-related protein [Bacillus cereus G9241] gi|47569297|ref|ZP_00239982.1| cold shock protein-related protein [Bacillus cereus G9241] gi|49188026|ref|YP_031279.1| cold shock protein CspC [Bacillus anthracis str. Sterne] gi|49481145|ref|YP_039179.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140373|ref|YP_086455.1| cold shock protein [Bacillus cereus E33L] gi|65317162|ref|ZP_00390121.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012] gi|75759030|ref|ZP_00739138.1| Cold shock protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118480228|ref|YP_897379.1| cold-shock DNA-binding protein family protein [Bacillus thuringiensis str. Al Hakam] gi|163942875|ref|YP_001647759.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|165869975|ref|ZP_02214632.1| cold shock protein CspC [Bacillus anthracis str. A0488] gi|167635267|ref|ZP_02393582.1| cold shock protein CspC [Bacillus anthracis str. A0442] gi|167640473|ref|ZP_02398736.1| cold shock protein CspC [Bacillus anthracis str. A0193] gi|170687914|ref|ZP_02879127.1| cold shock protein CspC [Bacillus anthracis str. A0465] gi|170707764|ref|ZP_02898215.1| cold shock protein CspC [Bacillus anthracis str. A0389] gi|177653014|ref|ZP_02935341.1| cold shock protein CspC [Bacillus anthracis str. A0174] gi|190567802|ref|ZP_03020714.1| cold shock protein CspC [Bacillus anthracis Tsiankovskii-I] gi|196032913|ref|ZP_03100326.1| cold shock protein CspC [Bacillus cereus W] gi|196045641|ref|ZP_03112871.1| cold shock protein CspC [Bacillus cereus 03BB108] gi|206970208|ref|ZP_03231161.1| cold shock protein CspC [Bacillus cereus AH1134] gi|218906366|ref|YP_002454200.1| cold shock protein CspC [Bacillus cereus AH820] gi|225867154|ref|YP_002752532.1| cold shock protein CspC [Bacillus cereus 03BB102] gi|228903664|ref|ZP_04067784.1| hypothetical protein bthur0014_48220 [Bacillus thuringiensis IBL 4222] gi|228930192|ref|ZP_04093201.1| hypothetical protein bthur0010_48740 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936477|ref|ZP_04099275.1| hypothetical protein bthur0009_49140 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228942325|ref|ZP_04104864.1| hypothetical protein bthur0008_49550 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228948909|ref|ZP_04111182.1| hypothetical protein bthur0007_50310 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228961427|ref|ZP_04123040.1| hypothetical protein bthur0005_48710 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228975255|ref|ZP_04135813.1| hypothetical protein bthur0003_50020 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981893|ref|ZP_04142188.1| hypothetical protein bthur0002_50520 [Bacillus thuringiensis Bt407] gi|228988414|ref|ZP_04148505.1| hypothetical protein bthur0001_50690 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229014358|ref|ZP_04171477.1| hypothetical protein bmyco0001_47610 [Bacillus mycoides DSM 2048] gi|229082403|ref|ZP_04214866.1| hypothetical protein bcere0023_50200 [Bacillus cereus Rock4-2] gi|229094285|ref|ZP_04225361.1| hypothetical protein bcere0021_49920 [Bacillus cereus Rock3-42] gi|229124697|ref|ZP_04253878.1| hypothetical protein bcere0016_49780 [Bacillus cereus 95/8201] gi|229130436|ref|ZP_04259393.1| hypothetical protein bcere0015_48700 [Bacillus cereus BDRD-Cer4] gi|229147720|ref|ZP_04276063.1| hypothetical protein bcere0012_48450 [Bacillus cereus BDRD-ST24] gi|229153345|ref|ZP_04281523.1| hypothetical protein bcere0011_48750 [Bacillus cereus m1550] gi|229175861|ref|ZP_04303359.1| hypothetical protein bcere0006_49320 [Bacillus cereus MM3] gi|229187401|ref|ZP_04314544.1| hypothetical protein bcere0004_49360 [Bacillus cereus BGSC 6E1] gi|229193438|ref|ZP_04320385.1| hypothetical protein bcere0002_50820 [Bacillus cereus ATCC 10876] gi|229602080|ref|YP_002869410.1| cold shock protein CspC [Bacillus anthracis str. A0248] gi|254686386|ref|ZP_05150245.1| cold shock protein CspC [Bacillus anthracis str. CNEVA-9066] gi|254744321|ref|ZP_05202001.1| cold shock protein CspC [Bacillus anthracis str. Kruger B] gi|254755619|ref|ZP_05207652.1| cold shock protein CspC [Bacillus anthracis str. Vollum] gi|254757074|ref|ZP_05209102.1| cold shock protein CspC [Bacillus anthracis str. Australia 94] gi|296505610|ref|YP_003667310.1| cold shock protein [Bacillus thuringiensis BMB171] gi|29898784|gb|AAP12056.1| Cold shock protein [Bacillus cereus ATCC 14579] gi|47554068|gb|EAL12434.1| cold shock protein-related protein [Bacillus cereus G9241] gi|47554864|gb|EAL13215.1| cold shock protein-related protein [Bacillus cereus G9241] gi|47556024|gb|EAL14362.1| cold shock protein-related protein [Bacillus cereus G9241] gi|49181953|gb|AAT57329.1| cold shock protein CspC [Bacillus anthracis str. Sterne] gi|49332701|gb|AAT63347.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973842|gb|AAU15392.1| cold shock protein [Bacillus cereus E33L] gi|74493496|gb|EAO56604.1| Cold shock protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118419453|gb|ABK87872.1| cold-shock DNA-binding protein family [Bacillus thuringiensis str. Al Hakam] gi|163865072|gb|ABY46131.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] gi|164714298|gb|EDR19818.1| cold shock protein CspC [Bacillus anthracis str. A0488] gi|167511516|gb|EDR86899.1| cold shock protein CspC [Bacillus anthracis str. A0193] gi|167529310|gb|EDR92062.1| cold shock protein CspC [Bacillus anthracis str. A0442] gi|170127321|gb|EDS96197.1| cold shock protein CspC [Bacillus anthracis str. A0389] gi|170668023|gb|EDT18773.1| cold shock protein CspC [Bacillus anthracis str. A0465] gi|172081789|gb|EDT66859.1| cold shock protein CspC [Bacillus anthracis str. A0174] gi|190561218|gb|EDV15191.1| cold shock protein CspC [Bacillus anthracis Tsiankovskii-I] gi|195994342|gb|EDX58297.1| cold shock protein CspC [Bacillus cereus W] gi|196023472|gb|EDX62149.1| cold shock protein CspC [Bacillus cereus 03BB108] gi|206734785|gb|EDZ51954.1| cold shock protein CspC [Bacillus cereus AH1134] gi|218536289|gb|ACK88687.1| cold shock protein CspC [Bacillus cereus AH820] gi|225789362|gb|ACO29579.1| cold shock protein CspC [Bacillus cereus 03BB102] gi|228589970|gb|EEK47842.1| hypothetical protein bcere0002_50820 [Bacillus cereus ATCC 10876] gi|228596105|gb|EEK53782.1| hypothetical protein bcere0004_49360 [Bacillus cereus BGSC 6E1] gi|228607594|gb|EEK64918.1| hypothetical protein bcere0006_49320 [Bacillus cereus MM3] gi|228629949|gb|EEK86600.1| hypothetical protein bcere0011_48750 [Bacillus cereus m1550] gi|228635733|gb|EEK92220.1| hypothetical protein bcere0012_48450 [Bacillus cereus BDRD-ST24] gi|228653031|gb|EEL08912.1| hypothetical protein bcere0015_48700 [Bacillus cereus BDRD-Cer4] gi|228658792|gb|EEL14451.1| hypothetical protein bcere0016_49780 [Bacillus cereus 95/8201] gi|228689138|gb|EEL42961.1| hypothetical protein bcere0021_49920 [Bacillus cereus Rock3-42] gi|228700835|gb|EEL53358.1| hypothetical protein bcere0023_50200 [Bacillus cereus Rock4-2] gi|228746958|gb|EEL96842.1| hypothetical protein bmyco0001_47610 [Bacillus mycoides DSM 2048] gi|228771270|gb|EEM19745.1| hypothetical protein bthur0001_50690 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778005|gb|EEM26277.1| hypothetical protein bthur0002_50520 [Bacillus thuringiensis Bt407] gi|228784534|gb|EEM32555.1| hypothetical protein bthur0003_50020 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228798241|gb|EEM45241.1| hypothetical protein bthur0005_48710 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228810665|gb|EEM57013.1| hypothetical protein bthur0007_50310 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228817369|gb|EEM63455.1| hypothetical protein bthur0008_49550 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228823309|gb|EEM69143.1| hypothetical protein bthur0009_49140 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829477|gb|EEM75105.1| hypothetical protein bthur0010_48740 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228855932|gb|EEN00472.1| hypothetical protein bthur0014_48220 [Bacillus thuringiensis IBL 4222] gi|229266488|gb|ACQ48125.1| cold shock protein CspC [Bacillus anthracis str. A0248] gi|296326662|gb|ADH09590.1| cold shock protein [Bacillus thuringiensis BMB171] gi|326942978|gb|AEA18874.1| cold shock protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 67 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + Sbjct: 1 MNMQGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55 Query: 61 ANGKYSAENLKL 72 A G +A +KL Sbjct: 56 ARGPQAANVVKL 67 >gi|302037950|ref|YP_003798272.1| cold shock protein CspA [Candidatus Nitrospira defluvii] gi|300606014|emb|CBK42347.1| Cold shock protein CspA [Candidatus Nitrospira defluvii] Length = 72 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 5/77 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N KG+GFI + GDDVF+H SA+ G L EG+ V +D VQ Sbjct: 1 MKTKGTVKWFNDRKGFGFI----RLDGGDDVFVHYSALQGEGFKTLKEGENVEFDIVQG- 55 Query: 61 ANGKYSAENLKLVPKSS 77 A G +A LK + +S Sbjct: 56 AKGPQAANVLKDLATAS 72 >gi|217977240|ref|YP_002361387.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] gi|217502616|gb|ACK50025.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] Length = 70 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G+D F+H SAV AG+ +L EGQ V ++ V + Sbjct: 1 MTTGTVKWFNSQKGFGFIAPD---DGGNDAFVHISAVERAGIGDLQEGQKVGFELVADRK 57 Query: 62 NGKYSAENLKLV 73 +GK SA+NLKL+ Sbjct: 58 SGKMSADNLKLL 69 >gi|197106226|ref|YP_002131603.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] gi|196479646|gb|ACG79174.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] Length = 69 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AG+ L EGQ ++++ ++ Sbjct: 1 MTSGTVKWFNATKGFGFIQPD---DGGTDVFVHISAVERAGMAGLHEGQKLSFEVQKDPR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKSAAANLQ 67 >gi|126739741|ref|ZP_01755432.1| cold shock family protein [Roseobacter sp. SK209-2-6] gi|126718973|gb|EBA15684.1| cold shock family protein [Roseobacter sp. SK209-2-6] Length = 68 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE + G DVF+H SAV +GL L + Q V+Y+ Q Sbjct: 1 MATGTVKWFNTTKGYGFIAPE---DGGKDVFVHISAVERSGLTGLADNQKVSYEL-QPGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA +L L+ Sbjct: 57 DGRESAVDLALL 68 >gi|326332603|ref|ZP_08198871.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] gi|325949604|gb|EGD41676.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] Length = 67 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI +G G+DVF+H SA+ S G +L E Q V +D Q Sbjct: 1 MAQGTVKWFNADKGFGFIAQDG---GGEDVFVHFSAIQSNGYKSLDENQKVEFDVTQGPK 57 Query: 62 NGKYSAENLKL 72 AEN+++ Sbjct: 58 G--PQAENVRV 66 >gi|329120534|ref|ZP_08249198.1| cold shock domain protein CspD [Neisseria bacilliformis ATCC BAA-1200] gi|327461273|gb|EGF07605.1| cold shock domain protein CspD [Neisseria bacilliformis ATCC BAA-1200] Length = 67 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E GDD+F H SA+ G L EGQ V++D + Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGDDLFAHFSAINMDGFKTLKEGQKVSFDVT-SGP 56 Query: 62 NGKYSAE 68 G +A Sbjct: 57 KGLQAAN 63 >gi|74095589|emb|CAJ27355.1| strongly similar to cold shock-like protein cspE [Cronobacter sakazakii] Length = 79 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ N A G Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 70 Query: 64 KYSAENLKL 72 +A + L Sbjct: 71 PSAANVIAL 79 >gi|73663621|ref|YP_302402.1| cold shock protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496136|dbj|BAE19457.1| cold shock protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 66 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E G+DVF+H SA+A G +L EGQ V ++ V+ D Sbjct: 1 MNNGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIAQEGYKSLEEGQAVEFEIVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|91977426|ref|YP_570085.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris BisB5] gi|91683882|gb|ABE40184.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB5] Length = 67 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P T DVF+H SAV AGL L E Q + Y+ V D Sbjct: 1 MQKGTVKWFNPTKGYGFIRP---TSGDKDVFVHISAVERAGLSTLNENQTIEYELV--DN 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKV 66 >gi|297200544|ref|ZP_06917941.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|197709669|gb|EDY53703.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] Length = 68 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ ++L Sbjct: 57 G--PQADMVRL 65 >gi|226507970|ref|NP_001140374.1| hypothetical protein LOC100272427 [Zea mays] gi|194699220|gb|ACF83694.1| unknown [Zea mays] Length = 395 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 RG++KW+N KG+GFI+PE + +D+F+H+S++ S G +L EG+ V + + D Sbjct: 6 RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGD- 61 Query: 62 NGKYSAENLK 71 +G+ A ++ Sbjct: 62 DGRTKAVDVT 71 >gi|16974801|pdb|1HZ9|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability gi|16974802|pdb|1HZ9|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability Length = 66 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQAVSFEIVQGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|311742699|ref|ZP_07716508.1| CspA family cold shock transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311314327|gb|EFQ84235.1| CspA family cold shock transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 67 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFI P+ + +DVF H +A+ S+G +L E Q V +D Q Sbjct: 1 MATGTVKWFNADKGFGFIAPD---DGSEDVFAHFTAIQSSGYRSLNENQKVEFDVEQGQK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--LQAANIRPL 67 >gi|290959448|ref|YP_003490630.1| cold shock protein [Streptomyces scabiei 87.22] gi|260648974|emb|CBG72088.1| cold shock protein [Streptomyces scabiei 87.22] Length = 68 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ ++L Sbjct: 57 G--PQADMVRL 65 >gi|227550530|ref|ZP_03980579.1| cold shock protein [Enterococcus faecium TX1330] gi|257880205|ref|ZP_05659858.1| cold-shock protein [Enterococcus faecium 1,230,933] gi|257883006|ref|ZP_05662659.1| cold-shock protein [Enterococcus faecium 1,231,502] gi|257885248|ref|ZP_05664901.1| cold-shock protein [Enterococcus faecium 1,231,501] gi|257888557|ref|ZP_05668210.1| cold-shock protein [Enterococcus faecium 1,141,733] gi|257891411|ref|ZP_05671064.1| cold-shock protein [Enterococcus faecium 1,231,410] gi|257893592|ref|ZP_05673245.1| cold-shock protein [Enterococcus faecium 1,231,408] gi|257897068|ref|ZP_05676721.1| cold-shock protein [Enterococcus faecium Com12] gi|257899006|ref|ZP_05678659.1| cold-shock protein [Enterococcus faecium Com15] gi|258614393|ref|ZP_05712163.1| cold shock protein [Enterococcus faecium DO] gi|260560497|ref|ZP_05832671.1| cold-shock protein [Enterococcus faecium C68] gi|261209014|ref|ZP_05923419.1| cold-shock protein [Enterococcus faecium TC 6] gi|289565174|ref|ZP_06445626.1| cold shock-like protein cspD [Enterococcus faecium D344SRF] gi|293378756|ref|ZP_06624914.1| major cold shock protein CspA [Enterococcus faecium PC4.1] gi|293553256|ref|ZP_06673893.1| cold-shock protein [Enterococcus faecium E1039] gi|293563316|ref|ZP_06677766.1| cold-shock protein [Enterococcus faecium E1162] gi|293569311|ref|ZP_06680609.1| cold-shock protein [Enterococcus faecium E1071] gi|293572477|ref|ZP_06683456.1| cold-shock protein [Enterococcus faecium E980] gi|294615298|ref|ZP_06695174.1| cold-shock protein [Enterococcus faecium E1636] gi|294619063|ref|ZP_06698558.1| cold shock protein [Enterococcus faecium E1679] gi|294621461|ref|ZP_06700630.1| cold-shock protein [Enterococcus faecium U0317] gi|314939797|ref|ZP_07847017.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|314943906|ref|ZP_07850632.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|314950003|ref|ZP_07853296.1| major cold shock protein CspA [Enterococcus faecium TX0082] gi|314953525|ref|ZP_07856437.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|314994272|ref|ZP_07859574.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|314995140|ref|ZP_07860256.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|227180431|gb|EEI61403.1| cold shock protein [Enterococcus faecium TX1330] gi|257814433|gb|EEV43191.1| cold-shock protein [Enterococcus faecium 1,230,933] gi|257818664|gb|EEV45992.1| cold-shock protein [Enterococcus faecium 1,231,502] gi|257821100|gb|EEV48234.1| cold-shock protein [Enterococcus faecium 1,231,501] gi|257824611|gb|EEV51543.1| cold-shock protein [Enterococcus faecium 1,141,733] gi|257827771|gb|EEV54397.1| cold-shock protein [Enterococcus faecium 1,231,410] gi|257829971|gb|EEV56578.1| cold-shock protein [Enterococcus faecium 1,231,408] gi|257833633|gb|EEV60054.1| cold-shock protein [Enterococcus faecium Com12] gi|257836918|gb|EEV61992.1| cold-shock protein [Enterococcus faecium Com15] gi|260073499|gb|EEW61827.1| cold-shock protein [Enterococcus faecium C68] gi|260077053|gb|EEW64775.1| cold-shock protein [Enterococcus faecium TC 6] gi|289162995|gb|EFD10843.1| cold shock-like protein cspD [Enterococcus faecium D344SRF] gi|291588017|gb|EFF19867.1| cold-shock protein [Enterococcus faecium E1071] gi|291591856|gb|EFF23489.1| cold-shock protein [Enterococcus faecium E1636] gi|291594724|gb|EFF26106.1| cold shock protein [Enterococcus faecium E1679] gi|291598955|gb|EFF30003.1| cold-shock protein [Enterococcus faecium U0317] gi|291602666|gb|EFF32881.1| cold-shock protein [Enterococcus faecium E1039] gi|291604768|gb|EFF34252.1| cold-shock protein [Enterococcus faecium E1162] gi|291607394|gb|EFF36737.1| cold-shock protein [Enterococcus faecium E980] gi|292642684|gb|EFF60836.1| major cold shock protein CspA [Enterococcus faecium PC4.1] gi|313590631|gb|EFR69476.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|313591307|gb|EFR70152.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|313594448|gb|EFR73293.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|313597447|gb|EFR76292.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|313640937|gb|EFS05517.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|313643650|gb|EFS08230.1| major cold shock protein CspA [Enterococcus faecium TX0082] Length = 66 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFIT + GDDVF+H SA+ G +L EGQ V + V+ A Sbjct: 1 MEHGTVKWFNNEKGFGFITVD----GGDDVFVHFSAIQGDGFKSLEEGQEVEFTIVEG-A 55 Query: 62 NGKYSAENLKL 72 G +AE KL Sbjct: 56 RGPQAAEVTKL 66 >gi|297582825|ref|YP_003698605.1| cold-shock DNA-binding domain-containing protein [Bacillus selenitireducens MLS10] gi|297141282|gb|ADH98039.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens MLS10] Length = 66 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E GDDVF+H SA+ + G L EGQ V ++ V+ + Sbjct: 1 MMTGKVKWFNAEKGFGFIERE----DGDDVFVHFSAIQAEGFKTLDEGQDVEFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|293375824|ref|ZP_06622094.1| major cold shock protein CspA [Turicibacter sanguinis PC909] gi|325838578|ref|ZP_08166579.1| cold shock protein CspB [Turicibacter sp. HGF1] gi|292645601|gb|EFF63641.1| major cold shock protein CspA [Turicibacter sanguinis PC909] gi|325490804|gb|EGC93107.1| cold shock protein CspB [Turicibacter sp. HGF1] Length = 66 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFIT + G+DVF H SA+ G L EGQ V+++ V+ + Sbjct: 1 MTTGTVKWFNAEKGFGFITVD----GGNDVFAHFSAITGEGFKTLEEGQKVSFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANIVKL 66 >gi|260428302|ref|ZP_05782281.1| conserved domain protein [Citreicella sp. SE45] gi|260422794|gb|EEX16045.1| conserved domain protein [Citreicella sp. SE45] Length = 68 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PEG DVF+H SAV +GL L + Q V+Y+ Q+ Sbjct: 1 MATGTVKWFNTTKGYGFIAPEG---GSKDVFVHISAVERSGLTELKDNQKVSYEL-QSGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA NL+L+ Sbjct: 57 DGRESAINLELL 68 >gi|260598298|ref|YP_003210869.1| Cold shock-like protein cspC [Cronobacter turicensis z3032] gi|260217475|emb|CBA31616.1| Cold shock-like protein cspC [Cronobacter turicensis z3032] Length = 106 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 42 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 97 Query: 64 KYSAENLKL 72 + + + Sbjct: 98 PAAVNVVAI 106 >gi|309812766|ref|ZP_07706505.1| cold shock-like protein CspE [Dermacoccus sp. Ellin185] gi|308433283|gb|EFP57176.1| cold shock-like protein CspE [Dermacoccus sp. Ellin185] Length = 67 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI +G G DVF+H SA+ + G +L EGQ V ++ Q D Sbjct: 1 MAQGTVKWFNAEKGFGFIEQDG---GGADVFVHFSAIQTNGYRSLDEGQRVEFEITQGDK 57 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 58 G--PQASNVT 65 >gi|326330338|ref|ZP_08196648.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] gi|325951875|gb|EGD43905.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] Length = 67 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI + GDDVF+H SA+ + G L E Q V +D Q Sbjct: 1 MTQGTVKWFNGDKGFGFIAQD---NGGDDVFVHFSAIQTQGYKTLDENQRVEFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ V Sbjct: 58 G--PQAENVRPV 67 >gi|254512165|ref|ZP_05124232.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae bacterium KLH11] gi|221535876|gb|EEE38864.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae bacterium KLH11] Length = 68 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V+Y+ Q+ Sbjct: 1 MPTGTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVSYEL-QDGR 56 Query: 62 NGKYSAENLKLV 73 +G+ A +LK + Sbjct: 57 DGRQMAADLKPL 68 >gi|303233128|ref|ZP_07319801.1| cold shock protein CspA [Atopobium vaginae PB189-T1-4] gi|302480713|gb|EFL43800.1| cold shock protein CspA [Atopobium vaginae PB189-T1-4] Length = 67 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NPDKGYGFI+ E GDD+F+H S + G L EGQ V +D Sbjct: 1 MAQGTVKWFNPDKGYGFISRE----DGDDLFVHFSEIQMDGFKTLEEGQAVEFDVT-TGQ 55 Query: 62 NGKYSAENLK 71 NGK A N++ Sbjct: 56 NGKLQASNVR 65 >gi|238757593|ref|ZP_04618777.1| Cold shock-like protein cspD [Yersinia aldovae ATCC 35236] gi|238704098|gb|EEP96631.1| Cold shock-like protein cspD [Yersinia aldovae ATCC 35236] Length = 85 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQG-P 56 Query: 62 NGKYSAENLKLV 73 G +++ + LV Sbjct: 57 KGNHASLIVPLV 68 >gi|115524372|ref|YP_781283.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115518319|gb|ABJ06303.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisA53] Length = 69 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P ++ G DVF+H SAV AGL L EGQ V+Y V + Sbjct: 1 MATGTVKWFNGQKGFGFIEP---SDGGKDVFVHISAVERAGLTGLAEGQKVSYQVVADKK 57 Query: 62 NGKYSAENLKLV 73 GK SAE+L LV Sbjct: 58 RGKESAESLALV 69 >gi|294636209|ref|ZP_06714624.1| conserved domain protein [Edwardsiella tarda ATCC 23685] gi|291090490|gb|EFE23051.1| conserved domain protein [Edwardsiella tarda ATCC 23685] Length = 97 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFITP + DVF+H SA+ S G L EGQ V + Q+ Sbjct: 32 KTGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSDGFKTLAEGQQVEFSI-QDSPR 87 Query: 63 GKYSAENLKL 72 G +A+ + L Sbjct: 88 GPAAADVVAL 97 >gi|13472286|ref|NP_103853.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|260464020|ref|ZP_05812215.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|319781978|ref|YP_004141454.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14023031|dbj|BAB49639.1| probable cold shock protein [Mesorhizobium loti MAFF303099] gi|259030191|gb|EEW31472.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|317167866|gb|ADV11404.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 70 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ + ++ Q+ Sbjct: 1 MATGTVKWFNATKGFGFIQPDA---GGADVFVHISAVERAGLSTLVEGQKINFEIEQDRR 57 Query: 62 NGKYSAENLK 71 GK SA +L Sbjct: 58 TGKSSAGSLS 67 >gi|260584219|ref|ZP_05851967.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633] gi|260158845|gb|EEW93913.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633] Length = 66 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI E G DVF+H SA+ S G +L EGQ V ++ V+ A Sbjct: 1 MEQGKVKWFNAEKGFGFIERE----DGSDVFVHFSAIQSEGYKSLDEGQAVEFE-VEEGA 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|300769133|ref|ZP_07079022.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493373|gb|EFK28552.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 88 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N DKG+GFIT E G DVF+H SA+ + G L EGQ VTYD Q D Sbjct: 22 IMKNGTVKWFNADKGFGFIT----GEDGTDVFVHFSAIQTDGFKTLDEGQKVTYDEEQGD 77 Query: 61 ANGKYSAENLK 71 A N++ Sbjct: 78 RG--PQATNVQ 86 >gi|295838116|ref|ZP_06825049.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|302520033|ref|ZP_07272375.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] gi|318062306|ref|ZP_07981027.1| cold shock protein [Streptomyces sp. SA3_actG] gi|318081844|ref|ZP_07989153.1| cold shock protein [Streptomyces sp. SA3_actF] gi|197700035|gb|EDY46968.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|302428928|gb|EFL00744.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] Length = 67 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGK 64 + Sbjct: 57 GPQ 59 >gi|293401962|ref|ZP_06646102.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304620|gb|EFE45869.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 66 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFIT ++ G DVF+H S++ S G L EGQ V++D V +D Sbjct: 1 MSTGKVKWFNAEKGYGFIT----SDEGKDVFVHYSSIQSDGFRTLEEGQRVSFDVVDSD- 55 Query: 62 NGKYSAENL 70 G+ +A + Sbjct: 56 RGQQAANVV 64 >gi|75677234|ref|YP_319655.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255] gi|74422104|gb|ABA06303.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi Nb-255] Length = 66 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P G G DVF+H SAV AGL L EGQ V ++ V N Sbjct: 1 MAKGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVERAGLSTLNEGQTVEFEEVAN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKV 66 >gi|197104417|ref|YP_002129794.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] gi|196477837|gb|ACG77365.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] Length = 250 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP KG+GFI PEG G D+F+H SAV AGL L EGQ V +D Q+ +GK Sbjct: 184 GVVKWFNPTKGFGFIKPEG---GGQDIFVHISAVEQAGLSGLNEGQTVDFDLEQDRRSGK 240 Query: 65 YSAENLKL 72 SA NLK+ Sbjct: 241 TSATNLKI 248 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAVA AGL L EG V Y+ Q+ Sbjct: 56 MASGTVKWFNTAKGFGFIQPD---DGGQDVFVHISAVAQAGLDALNEGDQVEYELEQDRR 112 Query: 62 NGKYSAENLKLVPKSS 77 +GK +A ++ + + + Sbjct: 113 SGKLAATSIVVTAQGA 128 >gi|121711172|ref|XP_001273202.1| cold shock NA binding domain protein [Aspergillus clavatus NRRL 1] gi|119401352|gb|EAW11776.1| cold shock NA binding domain protein [Aspergillus clavatus NRRL 1] Length = 125 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFITPE G+D+F+H AV G +L EGQ VT++ VQ Sbjct: 59 RQNGTVKWFNDEKGYGFITPET----GEDLFVHFRAVEGNGFKSLKEGQKVTFEAVQGQK 114 Query: 62 NGKYSAENLKLVP 74 A+ ++++ Sbjct: 115 G--RQADKVQVIE 125 >gi|297193625|ref|ZP_06911023.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|197721828|gb|EDY65736.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ +KL Sbjct: 57 G--PQADMVKL 65 >gi|118589767|ref|ZP_01547172.1| ATP/GTP-binding site motif A (P-loop) protein [Stappia aggregata IAM 12614] gi|118437853|gb|EAV44489.1| ATP/GTP-binding site motif A (P-loop) protein [Stappia aggregata IAM 12614] Length = 69 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI PE + DVF+H SAV AG+ +L EGQ V+++ VQ+ Sbjct: 1 MPVGTVKFFNTTKGFGFIQPE---DGASDVFVHISAVERAGMRSLVEGQKVSFEVVQDRR 57 Query: 62 NGKYSAENLKLV 73 +GK +A+NL+ V Sbjct: 58 SGKSAADNLQEV 69 >gi|239930514|ref|ZP_04687467.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291438875|ref|ZP_06578265.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291341770|gb|EFE68726.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ +++ Sbjct: 57 G--PQADMVRV 65 >gi|294668449|ref|ZP_06733549.1| hypothetical protein NEIELOOT_00364 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309602|gb|EFE50845.1| hypothetical protein NEIELOOT_00364 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E GDD+F H SA+ G L EGQ V++D + Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGDDLFAHFSAINMEGFKTLKEGQKVSFDVT-SGP 56 Query: 62 NGKYSAE 68 G +A Sbjct: 57 KGLQAAN 63 >gi|239981380|ref|ZP_04703904.1| cold shock protein [Streptomyces albus J1074] gi|291453236|ref|ZP_06592626.1| cold shock protein [Streptomyces albus J1074] gi|302552310|ref|ZP_07304652.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] gi|291356185|gb|EFE83087.1| cold shock protein [Streptomyces albus J1074] gi|302469928|gb|EFL33021.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ +++ Sbjct: 57 G--PQADMVRV 65 >gi|84685583|ref|ZP_01013480.1| cold shock family protein [Maritimibacter alkaliphilus HTCC2654] gi|84666249|gb|EAQ12722.1| cold shock family protein [Rhodobacterales bacterium HTCC2654] Length = 68 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P +E G DVF+H SAV +GL L + Q V+Y+ Q Sbjct: 1 MATGTVKWFNATKGFGFIEP---SEGGKDVFVHISAVERSGLTGLADNQKVSYEL-QAGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA NL+L+ Sbjct: 57 DGRESAANLELL 68 >gi|329849353|ref|ZP_08264199.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] gi|328841264|gb|EGF90834.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP KG+GFI P TE G DVF+H SAV AGL +L EGQ + Y Q+ Sbjct: 1 MATGTVKWFNPTKGFGFIEP---TEGGGDVFVHISAVERAGLRSLNEGQKIEYQVAQD-- 55 Query: 62 NGKYSAENLKLV 73 GK SA +LK + Sbjct: 56 RGKASAVDLKTL 67 >gi|315642390|ref|ZP_07896985.1| cold shock protein CspA [Enterococcus italicus DSM 15952] gi|315482298|gb|EFU72851.1| cold shock protein CspA [Enterococcus italicus DSM 15952] Length = 96 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KG+GFIT E+G DVF H SA+ + G +L EGQ VT+D + Sbjct: 31 MNKGTVKWFNAEKGFGFIT----GENGQDVFAHFSAIQADGFKSLDEGQAVTFDTEEGQR 86 Query: 62 NGKYSAENL 70 A N+ Sbjct: 87 G--MQAVNI 93 >gi|56419891|ref|YP_147209.1| cold shock protein [Geobacillus kaustophilus HTA426] gi|138894876|ref|YP_001125329.1| major cold shock protein CspB [Geobacillus thermodenitrificans NG80-2] gi|196248552|ref|ZP_03147253.1| cold-shock DNA-binding domain protein [Geobacillus sp. G11MC16] gi|261419562|ref|YP_003253244.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC61] gi|295402279|ref|ZP_06812235.1| cold-shock DNA-binding domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|297530466|ref|YP_003671741.1| cold-shock DNA-binding domain protein [Geobacillus sp. C56-T3] gi|312111498|ref|YP_003989814.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y4.1MC1] gi|319766378|ref|YP_004131879.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC52] gi|729217|sp|P41016|CSPB_BACCL RecName: Full=Cold shock protein CspB gi|7546262|pdb|1C9O|A Chain A, Crystal Structure Analysis Of The Bacillus Caldolyticus Cold Shock Protein Bc-Csp gi|7546263|pdb|1C9O|B Chain B, Crystal Structure Analysis Of The Bacillus Caldolyticus Cold Shock Protein Bc-Csp gi|146386838|pdb|2HAX|A Chain A, Crystal Structure Of Bacillus Caldolyticus Cold Shock Protein In Complex With Hexathymidine gi|146386839|pdb|2HAX|B Chain B, Crystal Structure Of Bacillus Caldolyticus Cold Shock Protein In Complex With Hexathymidine gi|1333711|emb|CAA51790.1| major cold shock protein (CspB) [Bacillus caldolyticus] gi|56379733|dbj|BAD75641.1| cold shock protein [Geobacillus kaustophilus HTA426] gi|134266389|gb|ABO66584.1| Major cold shock protein CspB [Geobacillus thermodenitrificans NG80-2] gi|196212277|gb|EDY07035.1| cold-shock DNA-binding domain protein [Geobacillus sp. G11MC16] gi|261376019|gb|ACX78762.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC61] gi|294975672|gb|EFG51294.1| cold-shock DNA-binding domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|297253718|gb|ADI27164.1| cold-shock DNA-binding domain protein [Geobacillus sp. C56-T3] gi|311216599|gb|ADP75203.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y4.1MC1] gi|317111244|gb|ADU93736.1| cold-shock DNA-binding domain protein [Geobacillus sp. Y412MC52] gi|740004|prf||2004289A cold shock protein Length = 66 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|301056652|ref|YP_003794863.1| cold shock protein [Bacillus anthracis CI] gi|300378821|gb|ADK07725.1| cold shock protein [Bacillus cereus biovar anthracis str. CI] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V +D V + Sbjct: 1 MNMQGRVKWFNAEKGFGFIERE----DGEDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DG 55 Query: 61 ANGKYSAENLKL 72 A G +A +KL Sbjct: 56 ARGPQAANVVKL 67 >gi|331641125|ref|ZP_08342260.1| cold shock protein [Escherichia coli H736] gi|331645781|ref|ZP_08346884.1| cold shock protein [Escherichia coli M605] gi|331651632|ref|ZP_08352651.1| cold shock protein [Escherichia coli M718] gi|331672164|ref|ZP_08372956.1| cold shock protein [Escherichia coli TA280] gi|331676282|ref|ZP_08376994.1| cold shock protein [Escherichia coli H591] gi|1778540|gb|AAB40823.1| cold shock-like protein [Escherichia coli] gi|331037923|gb|EGI10143.1| cold shock protein [Escherichia coli H736] gi|331044533|gb|EGI16660.1| cold shock protein [Escherichia coli M605] gi|331049910|gb|EGI21968.1| cold shock protein [Escherichia coli M718] gi|331070631|gb|EGI41994.1| cold shock protein [Escherichia coli TA280] gi|331076340|gb|EGI47622.1| cold shock protein [Escherichia coli H591] gi|332097718|gb|EGJ02692.1| cold shock-like protein cspI [Shigella boydii 3594-74] Length = 79 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ N A G Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 70 Query: 64 KYSAENLKL 72 +A + L Sbjct: 71 PSAANVIAL 79 >gi|332286174|ref|YP_004418085.1| putative cold shock-like protein [Pusillimonas sp. T7-7] gi|330430127|gb|AEC21461.1| putative cold shock-like protein [Pusillimonas sp. T7-7] Length = 68 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N DKG+GFITP+ G DVF H SA+ G +L EGQ V ++ V++ Sbjct: 1 MAQKGKVKWFNADKGFGFITPDA---GGTDVFAHFSAIEGRGYRSLNEGQEVEFE-VKDG 56 Query: 61 ANGKYSAE 68 G +AE Sbjct: 57 PKGPQAAE 64 >gi|92117648|ref|YP_577377.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91800542|gb|ABE62917.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P DVF+H SAV AGL L E Q++ YD V+N Sbjct: 1 MQKGTVKWFNPTKGYGFIKP---MNDDRDVFVHISAVERAGLSTLNENQVIEYDLVEN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKV 66 >gi|254386794|ref|ZP_05002084.1| cold shock protein [Streptomyces sp. Mg1] gi|194345629|gb|EDX26595.1| cold shock protein [Streptomyces sp. Mg1] Length = 68 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ +KL Sbjct: 57 G--PQADMVKL 65 >gi|222086901|ref|YP_002545435.1| cold shock protein [Agrobacterium radiobacter K84] gi|221724349|gb|ACM27505.1| cold shock protein [Agrobacterium radiobacter K84] Length = 69 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + DVF+H SAV AG+ +L +GQ ++Y+ V++ Sbjct: 1 MSTGTVKWFNAAKGFGFIQPD---DGATDVFVHISAVERAGMSSLRDGQKISYELVKDKR 57 Query: 62 NGKYSAENLK 71 +GK SA+ L+ Sbjct: 58 SGKMSADQLE 67 >gi|332671932|ref|YP_004454940.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340970|gb|AEE47553.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+ + G DVF H SA+AS+G +L E Q V +D Q Sbjct: 1 MAIGTVKWFNAEKGFGFIAPD---DGGPDVFAHYSAIASSGYRSLEENQKVQFDVTQGPK 57 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 58 G--PQASNIT 65 >gi|289450032|ref|YP_003475336.1| cold-shock DNA-binding domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184579|gb|ADC91004.1| cold-shock DNA-binding domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 70 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KGYGFI + GDD+F+H SA+ G L EGQ VT+D + Sbjct: 1 MNTGTVKWFNDTKGYGFIAND---NGGDDLFVHFSAIRIDGFKTLKEGQKVTFDTEADPK 57 Query: 62 NG-KYSAENL 70 + K A N+ Sbjct: 58 DPNKMRAVNV 67 >gi|29831363|ref|NP_825997.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29608478|dbj|BAC72532.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF+H SA+ ++G +L E Q V++D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQSVSFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 58 G--PQAENVTPL 67 >gi|33593717|ref|NP_881361.1| putative cold-shock protein [Bordetella pertussis Tohama I] gi|33597156|ref|NP_884799.1| putative cold-shock protein [Bordetella parapertussis 12822] gi|33601000|ref|NP_888560.1| putative cold-shock protein [Bordetella bronchiseptica RB50] gi|33563790|emb|CAE43032.1| putative cold-shock protein [Bordetella pertussis Tohama I] gi|33566607|emb|CAE37865.1| putative cold-shock protein [Bordetella parapertussis] gi|33575435|emb|CAE32513.1| putative cold-shock protein [Bordetella bronchiseptica RB50] gi|332383120|gb|AEE67967.1| putative cold-shock protein [Bordetella pertussis CS] Length = 81 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP+ + G+D+F H S++ G L EGQ V+++ +Q G Sbjct: 17 TGTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQG-PKG 72 Query: 64 KYS 66 K + Sbjct: 73 KQA 75 >gi|27375170|ref|NP_766699.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27348306|dbj|BAC45324.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 77 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+NP KGYGFI P+ + G+DVF+H SAV AG +L EG V+Y+ V N +GK Sbjct: 13 GTVKWFNPTKGYGFIAPD---DGGNDVFVHISAVEKAGYTSLVEGAKVSYELVMN-RSGK 68 Query: 65 YSAENLKL 72 +AENL+L Sbjct: 69 QAAENLRL 76 >gi|307328611|ref|ZP_07607784.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306885723|gb|EFN16736.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E Q VT+D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINATGFRSLEENQAVTFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN+ V Sbjct: 58 G--PQAENVSPV 67 >gi|330466858|ref|YP_004404601.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] gi|328809829|gb|AEB44001.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFIT +G G DVF+H SA+ S+G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQSSGYRTLEENQRVEFEIAQGQK 57 Query: 62 NGKYSAENLKLV 73 AE ++ + Sbjct: 58 G--PQAEQVRPL 67 >gi|302543455|ref|ZP_07295797.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302461073|gb|EFL24166.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q VT+D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQAVTFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN+ V Sbjct: 58 G--PQAENVSAV 67 >gi|152967580|ref|YP_001363364.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] gi|151362097|gb|ABS05100.1| putative cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFIT + + G DVF+H SA+ + G +L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNSEKGYGFITVD---DGGADVFVHYSAITADGYRSLEEGQRVEFEVGQGQK 57 Query: 62 NGKYSAENLKLV 73 AE+++ + Sbjct: 58 G--PQAESVRAL 67 >gi|119962819|ref|YP_946960.1| cold shock protein [Arthrobacter aurescens TC1] gi|119949678|gb|ABM08589.1| putative cold shock protein [Arthrobacter aurescens TC1] Length = 67 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI+PE + DVF H SA+ S+G +L E Q V++D Q Sbjct: 1 MATGTVKWFNSEKGFGFISPE---DGSQDVFAHYSAINSSGYRSLEENQKVSFDVEQGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--PQAVNIQAI 67 >gi|42391858|dbj|BAD08701.1| cold shock domain protein 3 [Triticum aestivum] Length = 231 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI+P+ + G+D+F+H+SA+ S G +L E V ++ + D +G Sbjct: 6 KGTVKWFNVTKGFGFISPD---DGGEDLFVHQSAIKSDGYRSLNENDAVEFEIITGD-DG 61 Query: 64 KYSAENLK 71 + A ++ Sbjct: 62 RTKASDVT 69 >gi|187478585|ref|YP_786609.1| cold shock-like protein [Bordetella avium 197N] gi|115423171|emb|CAJ49702.1| cold shock-like protein [Bordetella avium 197N] Length = 81 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP+ + G+D+F H S++ G L EGQ V+++ +Q G Sbjct: 17 TGTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQG-PKG 72 Query: 64 KYS 66 K + Sbjct: 73 KQA 75 >gi|254474468|ref|ZP_05087854.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp. R11] gi|214028711|gb|EEB69546.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp. R11] Length = 68 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ G DVF+H SAV +GL L + Q V Y+ Q Sbjct: 1 MATGTVKWFNTTKGYGFIAPDS---GGSDVFVHISAVERSGLTGLADNQKVNYEL-QPGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA NL+LV Sbjct: 57 DGRESAVNLELV 68 >gi|294630012|ref|ZP_06708572.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292833345|gb|EFF91694.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G +L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRSLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ +++ Sbjct: 57 G--PQADMVRV 65 >gi|227550363|ref|ZP_03980412.1| CspA family cold shock transcriptional regulator [Enterococcus faecium TX1330] gi|257879582|ref|ZP_05659235.1| cold-shock domain-contain protein [Enterococcus faecium 1,230,933] gi|257882601|ref|ZP_05662254.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,502] gi|257885024|ref|ZP_05664677.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,501] gi|257888396|ref|ZP_05668049.1| cold-shock domain-contain protein [Enterococcus faecium 1,141,733] gi|257890250|ref|ZP_05669903.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,410] gi|257893434|ref|ZP_05673087.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,408] gi|257897230|ref|ZP_05676883.1| cold-shock domain-contain protein [Enterococcus faecium Com12] gi|257899231|ref|ZP_05678884.1| cold-shock domain-contain protein [Enterococcus faecium Com15] gi|258616807|ref|ZP_05714577.1| cold-shock domain-contain protein [Enterococcus faecium DO] gi|260559753|ref|ZP_05831933.1| cold-shock domain-containing protein [Enterococcus faecium C68] gi|261207314|ref|ZP_05922001.1| cold-shock domain-containing protein [Enterococcus faecium TC 6] gi|289566513|ref|ZP_06446936.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF] gi|293378002|ref|ZP_06624180.1| major cold shock protein CspA [Enterococcus faecium PC4.1] gi|293557236|ref|ZP_06675784.1| cold-shock protein [Enterococcus faecium E1039] gi|293559750|ref|ZP_06676271.1| cold shock protein [Enterococcus faecium E1162] gi|293567614|ref|ZP_06678958.1| cold-shock protein [Enterococcus faecium E1071] gi|293570377|ref|ZP_06681434.1| cold-shock protein [Enterococcus faecium E980] gi|294616534|ref|ZP_06696312.1| cold-shock protein [Enterococcus faecium E1636] gi|294618375|ref|ZP_06697953.1| cold shock protein [Enterococcus faecium E1679] gi|294623246|ref|ZP_06702117.1| cold shock protein [Enterococcus faecium U0317] gi|314938910|ref|ZP_07846177.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|314943096|ref|ZP_07849897.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|314948107|ref|ZP_07851508.1| major cold shock protein CspA [Enterococcus faecium TX0082] gi|314951627|ref|ZP_07854672.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|314993868|ref|ZP_07859202.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|314996709|ref|ZP_07861732.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|227180502|gb|EEI61474.1| CspA family cold shock transcriptional regulator [Enterococcus faecium TX1330] gi|257813810|gb|EEV42568.1| cold-shock domain-contain protein [Enterococcus faecium 1,230,933] gi|257818259|gb|EEV45587.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,502] gi|257820876|gb|EEV48010.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,501] gi|257824450|gb|EEV51382.1| cold-shock domain-contain protein [Enterococcus faecium 1,141,733] gi|257826610|gb|EEV53236.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,410] gi|257829813|gb|EEV56420.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,408] gi|257833795|gb|EEV60216.1| cold-shock domain-contain protein [Enterococcus faecium Com12] gi|257837143|gb|EEV62217.1| cold-shock domain-contain protein [Enterococcus faecium Com15] gi|260074421|gb|EEW62743.1| cold-shock domain-containing protein [Enterococcus faecium C68] gi|260078374|gb|EEW66078.1| cold-shock domain-containing protein [Enterococcus faecium TC 6] gi|289161667|gb|EFD09544.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF] gi|291589715|gb|EFF21519.1| cold-shock protein [Enterococcus faecium E1071] gi|291590581|gb|EFF22312.1| cold-shock protein [Enterococcus faecium E1636] gi|291595352|gb|EFF26667.1| cold shock protein [Enterococcus faecium E1679] gi|291597353|gb|EFF28533.1| cold shock protein [Enterococcus faecium U0317] gi|291600600|gb|EFF30904.1| cold-shock protein [Enterococcus faecium E1039] gi|291606298|gb|EFF35711.1| cold shock protein [Enterococcus faecium E1162] gi|291609555|gb|EFF38820.1| cold-shock protein [Enterococcus faecium E980] gi|292643367|gb|EFF61499.1| major cold shock protein CspA [Enterococcus faecium PC4.1] gi|313589147|gb|EFR67992.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|313591678|gb|EFR70523.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|313596223|gb|EFR75068.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|313598198|gb|EFR77043.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|313641784|gb|EFS06364.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|313645443|gb|EFS10023.1| major cold shock protein CspA [Enterococcus faecium TX0082] Length = 66 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI+ E G DVF+H SA+ G L EGQ VT+D ++D Sbjct: 1 MENGTVKWFNAEKGFGFISRE----DGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESD- 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGPQAANVVK 65 >gi|297201608|ref|ZP_06919005.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|197711021|gb|EDY55055.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|311897871|dbj|BAJ30279.1| putative cold shock protein [Kitasatospora setae KM-6054] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF+H SA+ ++G +L E Q V++D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQAVSFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN+ V Sbjct: 58 G--PQAENVTPV 67 >gi|328884096|emb|CCA57335.1| Cold shock protein CspA [Streptomyces venezuelae ATCC 10712] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G +L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRSLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ +KL Sbjct: 57 G--PQADMVKL 65 >gi|330469179|ref|YP_004406922.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] gi|328812150|gb|AEB46322.1| cold-shock DNA-binding domain protein [Verrucosispora maris AB-18-032] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+AS+G LTEGQ V +D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFVHYSAIASSGYRELTEGQKVEFDVTQGQK 57 Query: 62 NGKYSAENLK 71 A+N++ Sbjct: 58 G--PQADNVR 65 >gi|316933345|ref|YP_004108327.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601059|gb|ADU43594.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 69 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P ++ G+DVF+H SAV AGL L EGQ V+++ + Sbjct: 1 MTTGTVKWFNGQKGFGFIAP---SDGGNDVFVHISAVERAGLSGLAEGQQVSFEVKVDKM 57 Query: 62 NGKYSAENLKL 72 GK SAENL L Sbjct: 58 RGKSSAENLAL 68 >gi|288556191|ref|YP_003428126.1| cold shock protein [Bacillus pseudofirmus OF4] gi|288547351|gb|ADC51234.1| cold shock protein [Bacillus pseudofirmus OF4] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MTQTGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAITGEGFKSLDEGQAVEFEIVEGD 56 Query: 61 ANGKYSAENLK 71 G +A +K Sbjct: 57 -RGPQAANVVK 66 >gi|238020304|ref|ZP_04600730.1| hypothetical protein GCWU000324_00182 [Kingella oralis ATCC 51147] gi|237867284|gb|EEP68290.1| hypothetical protein GCWU000324_00182 [Kingella oralis ATCC 51147] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFDVT-TGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|226310536|ref|YP_002770430.1| cold shock protein [Brevibacillus brevis NBRC 100599] gi|226093484|dbj|BAH41926.1| cold shock protein [Brevibacillus brevis NBRC 100599] Length = 66 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI E G+DVF+H SA+ G L EGQ V ++ V+ + Sbjct: 1 MQTGTVKWFNAEKGYGFIAVE----GGNDVFVHFSAIQGDGFKTLEEGQRVEFNVVEGNR 56 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 57 G--PQAENVTKL 66 >gi|298291124|ref|YP_003693063.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296927635|gb|ADH88444.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 71 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KGYGFI P+G+ G DVF+H SAV +GL L +G+ V+++ + + Sbjct: 4 QTGTVKWFNDQKGYGFIQPDGA---GKDVFVHISAVQRSGLQGLRDGEKVSFELQTDQRS 60 Query: 63 GKYSAENLKL 72 GK SA NL++ Sbjct: 61 GKTSAVNLRV 70 >gi|187926455|ref|YP_001892800.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|241665942|ref|YP_002984301.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] gi|309778741|ref|ZP_07673514.1| cold shock transcription regulator protein [Ralstonia sp. 5_7_47FAA] gi|187728209|gb|ACD29373.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|240867969|gb|ACS65629.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] gi|308922449|gb|EFP68073.1| cold shock transcription regulator protein [Ralstonia sp. 5_7_47FAA] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H SA+ SAG +L EGQ V+++ Q Sbjct: 1 MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSAINSAGFKSLKEGQKVSFEVTQG-P 56 Query: 62 NGKYSAENL 70 GK ++ + Sbjct: 57 KGKQASNIV 65 >gi|13475232|ref|NP_106796.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|14025983|dbj|BAB52582.1| cold shock protein [Mesorhizobium loti MAFF303099] Length = 70 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G DVF+H SAV AGL LT+GQ + Y+ Q+ Sbjct: 1 MAIGTVKWFNSTKGFGFIQPD---NGGQDVFVHISAVERAGLSTLTDGQKINYEVEQDRR 57 Query: 62 NGKYSAENLK 71 GK SA NL Sbjct: 58 TGKSSAGNLS 67 >gi|297626180|ref|YP_003687943.1| Cold shock-like protein CspA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921945|emb|CBL56505.1| Cold shock-like protein CspA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 68 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI +GS++ DVF+H SA+ S G +L EGQ V +D Q Sbjct: 1 MATGTVKWFNAEKGYGFIAVDGSSD---DVFVHYSAIDSTGFRSLDEGQKVEFDIAQGPK 57 Query: 62 NGKYSAENLKLV 73 AE++KLV Sbjct: 58 G--QQAEHVKLV 67 >gi|238060156|ref|ZP_04604865.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|237881967|gb|EEP70795.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+A++G L EGQ V ++ Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFVHYSAIATSGYRELNEGQKVEFEVTQGQK 57 Query: 62 NGKYSAENLKLV 73 A+N++ + Sbjct: 58 G--PQADNVRPM 67 >gi|311107315|ref|YP_003980168.1| cold shock-like protein CspG [Achromobacter xylosoxidans A8] gi|310762004|gb|ADP17453.1| cold shock-like protein CspG [Achromobacter xylosoxidans A8] Length = 94 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP+ + G+D+F H S++ G L EGQ V ++ +Q G Sbjct: 30 TGTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQG-PKG 85 Query: 64 KYS 66 K + Sbjct: 86 KQA 88 >gi|238919337|ref|YP_002932852.1| hypothetical protein NT01EI_1429 [Edwardsiella ictaluri 93-146] gi|269138654|ref|YP_003295355.1| major cold shock protein [Edwardsiella tarda EIB202] gi|238868906|gb|ACR68617.1| conserved domain protein [Edwardsiella ictaluri 93-146] gi|267984315|gb|ACY84144.1| major cold shock protein [Edwardsiella tarda EIB202] gi|304558665|gb|ADM41329.1| Cold shock protein CspA [Edwardsiella tarda FL6-60] Length = 71 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 4/70 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ G D+F+H SA+ S G +L EGQ V ++ A G Sbjct: 6 TGLVKWFNADKGFGFITPD---NGGSDIFVHFSAIQSNGYKSLDEGQKVAFEVQTGAAKG 62 Query: 64 KYSAENLKLV 73 SA N+ + Sbjct: 63 P-SAINVTPL 71 >gi|294498234|ref|YP_003561934.1| cold shock protein [Bacillus megaterium QM B1551] gi|295703585|ref|YP_003596660.1| cold shock protein [Bacillus megaterium DSM 319] gi|294348171|gb|ADE68500.1| cold shock protein [Bacillus megaterium QM B1551] gi|294801244|gb|ADF38310.1| cold shock protein [Bacillus megaterium DSM 319] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI E G DVF+H SA+ S G +L EGQ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGYGFIEVE----GGSDVFVHFSAIQSEGYKSLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAANVTKL 66 >gi|294102753|ref|YP_003554611.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] gi|293617733|gb|ADE57887.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] Length = 66 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFIT ++ G DVF+H S++ G L EGQ VT++ A Sbjct: 1 MSQGTVKWFNATKGYGFIT----SDEGKDVFVHFSSIQGDGFKTLDEGQRVTFEVT-AGA 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 KGDQAANVVKL 66 >gi|308068467|ref|YP_003870072.1| Cold shock-like protein cspD [Paenibacillus polymyxa E681] gi|305857746|gb|ADM69534.1| Cold shock-like protein cspD [Paenibacillus polymyxa E681] Length = 65 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI + G+DVF+H SA+ G L EGQ V ++ + + G Sbjct: 2 KGTVKWFNAEKGYGFIQ----MDGGEDVFVHFSAIQGDGFKTLEEGQAVEFEITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|1169112|sp|P42016|CSPB_BACST RecName: Full=Cold shock protein CspB; AltName: Full=Major cold shock protein gi|1129127|emb|CAA51792.1| major cold shock protein (CspB) [Geobacillus stearothermophilus] gi|740006|prf||2004289C cold shock protein Length = 66 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KGYGFI E G DVF+H +A+ G +L EGQ V+++ VQ + Sbjct: 1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKSLEEGQEVSFEIVQGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|311897785|dbj|BAJ30193.1| putative cold shock protein [Kitasatospora setae KM-6054] Length = 68 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGK 64 + Sbjct: 57 GPQ 59 >gi|297195982|ref|ZP_06913380.1| cold shock protein 1 [Streptomyces pristinaespiralis ATCC 25486] gi|197718880|gb|EDY62788.1| cold shock protein 1 [Streptomyces pristinaespiralis ATCC 25486] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q V +D Q Sbjct: 1 MASGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVEFDITQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ V Sbjct: 58 G--PQAENVRPV 67 >gi|190890873|ref|YP_001977415.1| cold shock protein [Rhizobium etli CIAT 652] gi|218463533|ref|ZP_03503624.1| cold shock protein [Rhizobium etli Kim 5] gi|218507653|ref|ZP_03505531.1| cold shock protein [Rhizobium etli Brasil 5] gi|218514329|ref|ZP_03511169.1| cold shock protein [Rhizobium etli 8C-3] gi|218663162|ref|ZP_03519092.1| cold shock protein [Rhizobium etli IE4771] gi|218671488|ref|ZP_03521158.1| cold shock protein [Rhizobium etli GR56] gi|190696152|gb|ACE90237.1| cold shock protein [Rhizobium etli CIAT 652] gi|327190699|gb|EGE57781.1| cold shock protein [Rhizobium etli CNPAF512] Length = 69 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N KG+GFI P+ + DVF+H SAV AG+ LTEGQ V YD V++ Sbjct: 1 MNSGVVKWFNGTKGFGFIQPD---DGSTDVFVHISAVERAGMRELTEGQKVRYDLVRDKR 57 Query: 62 NGKYSAENLK 71 +GK +A+NL+ Sbjct: 58 SGKNAADNLQ 67 >gi|77462572|ref|YP_352076.1| cold-shock DNA-binding protein family protein [Rhodobacter sphaeroides 2.4.1] gi|126461506|ref|YP_001042620.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221638430|ref|YP_002524692.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] gi|332557457|ref|ZP_08411779.1| cold shock protein [Rhodobacter sphaeroides WS8N] gi|77386990|gb|ABA78175.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides 2.4.1] gi|126103170|gb|ABN75848.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17029] gi|221159211|gb|ACM00191.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] gi|332275169|gb|EGJ20484.1| cold shock protein [Rhodobacter sphaeroides WS8N] Length = 68 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G DVF+H SA+ AG+ L +GQ VT+D + D Sbjct: 1 MANGTVKWFNATKGFGFIAPAG---GSKDVFVHISALERAGIRQLNDGQAVTFDL-ETDR 56 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 57 NGRESATNLAL 67 >gi|163859299|ref|YP_001633597.1| cold shock protein [Bordetella petrii DSM 12804] gi|163263027|emb|CAP45330.1| cold shock protein [Bordetella petrii] Length = 68 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 MV +G +KW+N DKG+GFITP+ G DVF H SA+ G +L EGQ V ++ V++ Sbjct: 1 MVQKGKVKWFNADKGFGFITPDA---GGTDVFAHFSAIQGRGYRSLNEGQEVEFE-VKDG 56 Query: 61 ANGKYSAE 68 G +A+ Sbjct: 57 PKGPQAAD 64 >gi|17549274|ref|NP_522614.1| cold shock-like transcription regulator protein [Ralstonia solanacearum GMI1000] gi|83749154|ref|ZP_00946157.1| Cold shock protein [Ralstonia solanacearum UW551] gi|300694069|ref|YP_003750042.1| cold shock-like protein [Ralstonia solanacearum PSI07] gi|17431526|emb|CAD18204.1| probable cold shock activator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|83724150|gb|EAP71325.1| Cold shock protein [Ralstonia solanacearum UW551] gi|299069468|emb|CBJ40735.1| Cold shock protein [Ralstonia solanacearum CMR15] gi|299076106|emb|CBJ35417.1| Cold shock-like protein [Ralstonia solanacearum PSI07] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ Q Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|212712933|ref|ZP_03321061.1| hypothetical protein PROVALCAL_04031 [Providencia alcalifaciens DSM 30120] gi|212684411|gb|EEB43939.1| hypothetical protein PROVALCAL_04031 [Providencia alcalifaciens DSM 30120] Length = 81 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA++ G L EGQ V ++ + A G Sbjct: 17 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAISGDGFKTLAEGQKVEFEITEG-AKG 72 Query: 64 KYSAENLKL 72 +A + L Sbjct: 73 PSAANVVSL 81 >gi|58581493|ref|YP_200509.1| cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426087|gb|AAW75124.1| cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 75 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 5/73 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+PE + DVF H SA+ S G +L EGQ V+YD Q Sbjct: 8 MPNGTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVSYDVTQGPK 64 Query: 62 NGKYSAENLKLVP 74 A N+ V Sbjct: 65 G--AQASNITPVE 75 >gi|218767948|ref|YP_002342460.1| putative transcriptional regulator [Neisseria meningitidis Z2491] gi|241758498|ref|ZP_04756617.1| cold-shock DNA-binding domain protein [Neisseria flavescens SK114] gi|121051956|emb|CAM08264.1| putative transcriptional regulator [Neisseria meningitidis Z2491] gi|241321333|gb|EER57481.1| cold-shock DNA-binding domain protein [Neisseria flavescens SK114] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMDGFKTLKEGQRVSFDVT-TGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|89097123|ref|ZP_01170013.1| cold-shock protein [Bacillus sp. NRRL B-14911] gi|89087946|gb|EAR67057.1| cold-shock protein [Bacillus sp. NRRL B-14911] Length = 66 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ VT+D Q A Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----GGDDVFVHFSAIQSEGFKSLDEGQKVTFDVEQG-A 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|260575739|ref|ZP_05843736.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] gi|259022137|gb|EEW25436.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] Length = 68 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H SAV AGL L + Q + ++ Q+ Sbjct: 1 MPTGTVKWFNSTKGYGFIAPD---DGGKDVFVHISAVERAGLKGLNDNQKIGFEL-QSGR 56 Query: 62 NGKYSAENLKLV 73 +GK SA +L+L+ Sbjct: 57 DGKQSAGDLRLL 68 >gi|323339641|ref|ZP_08079913.1| cold-shock domain family protein [Lactobacillus ruminis ATCC 25644] gi|323092937|gb|EFZ35537.1| cold-shock domain family protein [Lactobacillus ruminis ATCC 25644] Length = 66 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ VT+D V+ Sbjct: 1 MEQGTVKWFNAEKGYGFITRE----DGSDVFVHFSAIQGEGYKSLEEGQHVTFD-VEEGQ 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGLQAANVVK 65 >gi|92118346|ref|YP_578075.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91801240|gb|ABE63615.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 73 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI P+ G DVF+H SAV AGL +L EG V+Y+ V N G Sbjct: 9 TGTVKWFNATKGFGFIQPDS---GGKDVFVHISAVERAGLSSLNEGAKVSYEVVAN--RG 63 Query: 64 KYSAENLKL 72 K SAENL++ Sbjct: 64 KESAENLRV 72 >gi|182437019|ref|YP_001824738.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|239943163|ref|ZP_04695100.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998] gi|239989621|ref|ZP_04710285.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379] gi|282860556|ref|ZP_06269622.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|291446637|ref|ZP_06586027.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|326777634|ref|ZP_08236899.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465535|dbj|BAG20055.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|282564292|gb|EFB69828.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|291349584|gb|EFE76488.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|320009370|gb|ADW04220.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] gi|326657967|gb|EGE42813.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 68 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ +KL Sbjct: 57 G--PQADMVKL 65 >gi|295697365|ref|YP_003590603.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] gi|295412967|gb|ADG07459.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+NPDKGYGFI+ E G+DVF+H SA+ S G L+EGQLV +D VQ A G Sbjct: 2 QGRVKWFNPDKGYGFISRE----DGEDVFVHYSAIQSQGFRTLSEGQLVEFDIVQG-ARG 56 Query: 64 KYSAENL 70 +A + Sbjct: 57 PQAANVV 63 >gi|309775820|ref|ZP_07670814.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308916358|gb|EFP62104.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 66 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFIT ++ G D+F+H S++ S G L EGQ V +D V++D Sbjct: 1 MSTGKVKWFNAEKGYGFIT----SDDGKDIFVHYSSIQSDGFRTLEEGQAVNFDVVESDR 56 Query: 62 NGKYSAENLKL 72 A N+ + Sbjct: 57 G--QQAANVTV 65 >gi|228993896|ref|ZP_04153799.1| hypothetical protein bpmyx0001_46190 [Bacillus pseudomycoides DSM 12442] gi|228999933|ref|ZP_04159505.1| hypothetical protein bmyco0003_44860 [Bacillus mycoides Rock3-17] gi|229007485|ref|ZP_04165082.1| hypothetical protein bmyco0002_43640 [Bacillus mycoides Rock1-4] gi|229087667|ref|ZP_04219793.1| hypothetical protein bcere0022_42280 [Bacillus cereus Rock3-44] gi|229164128|ref|ZP_04292064.1| hypothetical protein bcere0009_48900 [Bacillus cereus R309803] gi|228619364|gb|EEK76254.1| hypothetical protein bcere0009_48900 [Bacillus cereus R309803] gi|228695628|gb|EEL48487.1| hypothetical protein bcere0022_42280 [Bacillus cereus Rock3-44] gi|228753873|gb|EEM03314.1| hypothetical protein bmyco0002_43640 [Bacillus mycoides Rock1-4] gi|228759875|gb|EEM08849.1| hypothetical protein bmyco0003_44860 [Bacillus mycoides Rock3-17] gi|228765847|gb|EEM14498.1| hypothetical protein bpmyx0001_46190 [Bacillus pseudomycoides DSM 12442] Length = 65 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + A G Sbjct: 2 QGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQKVEFDIV-DGARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|71907020|ref|YP_284607.1| cold-shock DNA-binding protein family protein [Dechloromonas aromatica RCB] gi|71846641|gb|AAZ46137.1| cold-shock DNA-binding protein family [Dechloromonas aromatica RCB] Length = 67 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H SA+ S+G LTEGQ V++D Sbjct: 1 MATGTVKWFNDSKGFGFITPD---QGGEDLFAHFSAIQSSGFKTLTEGQKVSFDVTTGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 58 G--LQASNIQPV 67 >gi|86356809|ref|YP_468701.1| cold shock protein [Rhizobium etli CFN 42] gi|86280911|gb|ABC89974.1| cold shock protein [Rhizobium etli CFN 42] Length = 69 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N KG+GFI P+ + DVF+H SAV AG+ LTEGQ V YD V++ Sbjct: 1 MNSGVVKWFNGTKGFGFIQPD---DGSTDVFVHISAVERAGMRELTEGQKVRYDLVRDKR 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKNSADNLQ 67 >gi|159184158|ref|NP_353140.2| cold shock protein [Agrobacterium tumefaciens str. C58] gi|159139492|gb|AAK85925.2| cold shock protein [Agrobacterium tumefaciens str. C58] Length = 69 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + DVF+H SAV AGL L +GQ ++Y+ +Q+ Sbjct: 1 MATGTVKWFNATKGYGFIQPD---DGSQDVFVHISAVERAGLTALNDGQKLSYELMQDRR 57 Query: 62 NGKYSAENL 70 +GK SA L Sbjct: 58 SGKMSAGEL 66 >gi|241202847|ref|YP_002973943.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856737|gb|ACS54404.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 69 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ GDD F+H SAV AG+ L EGQ + +D +++ Sbjct: 1 MATGTVKWFNSTKGFGFIQPD---NGGDDAFVHISAVERAGMRELVEGQKIGFDLERDNK 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKMSACNLQ 67 >gi|163736844|ref|ZP_02144262.1| cold shock family protein [Phaeobacter gallaeciensis BS107] gi|163743998|ref|ZP_02151367.1| cold shock family protein [Phaeobacter gallaeciensis 2.10] gi|161382758|gb|EDQ07158.1| cold shock family protein [Phaeobacter gallaeciensis 2.10] gi|161389448|gb|EDQ13799.1| cold shock family protein [Phaeobacter gallaeciensis BS107] Length = 68 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ G DVF+H SAV +GL L + Q VTY+ Q Sbjct: 1 MATGTVKWFNTTKGYGFIAPDA---GGSDVFVHISAVERSGLTGLADNQKVTYEL-QPGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N++L Sbjct: 57 DGRESAVNIEL 67 >gi|296390681|ref|ZP_06880156.1| cold-shock protein [Pseudomonas aeruginosa PAb1] Length = 204 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 137 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 192 Query: 62 NGKYSAENL 70 AE++ Sbjct: 193 G--LQAEDV 199 >gi|254245244|ref|ZP_04938566.1| hypothetical protein PA2G_06136 [Pseudomonas aeruginosa 2192] gi|126198622|gb|EAZ62685.1| hypothetical protein PA2G_06136 [Pseudomonas aeruginosa 2192] Length = 203 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 136 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 191 Query: 62 NGKYSAENL 70 AE++ Sbjct: 192 G--LQAEDV 198 >gi|152987217|ref|YP_001349896.1| cold-shock protein [Pseudomonas aeruginosa PA7] gi|150962375|gb|ABR84400.1| probable cold-shock protein [Pseudomonas aeruginosa PA7] Length = 203 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 136 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 191 Query: 62 NGKYSAENL 70 AE++ Sbjct: 192 G--LQAEDV 198 >gi|107100418|ref|ZP_01364336.1| hypothetical protein PaerPA_01001443 [Pseudomonas aeruginosa PACS2] Length = 204 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 137 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 192 Query: 62 NGKYSAENL 70 AE++ Sbjct: 193 G--LQAEDV 199 >gi|116048886|ref|YP_792313.1| cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14] gi|313105848|ref|ZP_07792111.1| putative cold-shock protein [Pseudomonas aeruginosa 39016] gi|115584107|gb|ABJ10122.1| probable cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14] gi|310878613|gb|EFQ37207.1| putative cold-shock protein [Pseudomonas aeruginosa 39016] Length = 204 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 137 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDK 192 Query: 62 NGKYSAENL 70 AE++ Sbjct: 193 G--LQAEDV 199 >gi|294677982|ref|YP_003578597.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003] gi|294476802|gb|ADE86190.1| cold shock protein CspA-2 [Rhodobacter capsulatus SB 1003] Length = 68 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+G G DVF+H SAV AGL L++ Q ++++ + + Sbjct: 1 MATGTVKWFNTTKGYGFIAPDG---GGKDVFVHISAVERAGLKALSDNQKISFELI-SGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA +LKL+ Sbjct: 57 DGRSSAGDLKLL 68 >gi|289522213|ref|ZP_06439067.1| cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504049|gb|EFD25213.1| cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N KGYGFIT + G DVF+H SA+ G L EGQ V+++ VQ Sbjct: 1 MKTQGTVKWFNESKGYGFIT----ADGGKDVFVHYSAIQQDGFKTLAEGQRVSFEIVQG- 55 Query: 61 ANGKYSAEN 69 + G ++E Sbjct: 56 SKGPQASEV 64 >gi|302553359|ref|ZP_07305701.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] gi|302559146|ref|ZP_07311488.1| cold shock transcription regulator protein [Streptomyces griseoflavus Tu4000] gi|302470977|gb|EFL34070.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] gi|302476764|gb|EFL39857.1| cold shock transcription regulator protein [Streptomyces griseoflavus Tu4000] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF+H SA+ ++G +L E Q V++D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINASGFRSLEENQQVSFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN+ V Sbjct: 58 G--PQAENVTPV 67 >gi|121602065|ref|YP_989256.1| cold-shock DNA-binding family protein [Bartonella bacilliformis KC583] gi|120614242|gb|ABM44843.1| cold-shock DNA-binding family protein [Bartonella bacilliformis KC583] Length = 69 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P + DVF+H SAV +GL +L EGQ ++Y+ +++ Sbjct: 1 MSTGIVKWFNATKGFGFIQP---NDGSADVFVHISAVERSGLNSLNEGQKISYEVLKDQR 57 Query: 62 NGKYSAENLKLV 73 +GK+SA NL + Sbjct: 58 SGKFSAGNLSAL 69 >gi|45441055|ref|NP_992594.1| cold shock-like protein [Yersinia pestis biovar Microtus str. 91001] gi|51595732|ref|YP_069923.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953] gi|108806653|ref|YP_650569.1| cold shock-like protein [Yersinia pestis Antiqua] gi|108812775|ref|YP_648542.1| cold shock-like protein [Yersinia pestis Nepal516] gi|145599602|ref|YP_001163678.1| cold shock-like protein [Yersinia pestis Pestoides F] gi|149366623|ref|ZP_01888657.1| cold shock-like protein [Yersinia pestis CA88-4125] gi|153950801|ref|YP_001401574.1| cold shock domain-containing protein CspD [Yersinia pseudotuberculosis IP 31758] gi|162421201|ref|YP_001606104.1| cold shock domain-containing protein CspD [Yersinia pestis Angola] gi|165924529|ref|ZP_02220361.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis str. F1991016] gi|165938992|ref|ZP_02227545.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis str. IP275] gi|166009852|ref|ZP_02230750.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua str. E1979001] gi|166211633|ref|ZP_02237668.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua str. B42003004] gi|167399962|ref|ZP_02305480.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419873|ref|ZP_02311626.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424253|ref|ZP_02316006.1| cold shock domain protein CspD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469765|ref|ZP_02334469.1| cold shock domain protein CspD [Yersinia pestis FV-1] gi|170024919|ref|YP_001721424.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|186894809|ref|YP_001871921.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|218928514|ref|YP_002346389.1| cold shock-like protein [Yersinia pestis CO92] gi|229841332|ref|ZP_04461491.1| cold shock-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843436|ref|ZP_04463582.1| cold shock-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229895809|ref|ZP_04510979.1| cold shock-like protein [Yersinia pestis Pestoides A] gi|229903189|ref|ZP_04518302.1| cold shock-like protein [Yersinia pestis Nepal516] gi|270486982|ref|ZP_06204056.1| cold shock domain protein CspD [Yersinia pestis KIM D27] gi|45435914|gb|AAS61471.1| cold shock-like protein [Yersinia pestis biovar Microtus str. 91001] gi|51589014|emb|CAH20632.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953] gi|108776423|gb|ABG18942.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108778566|gb|ABG12624.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] gi|115347125|emb|CAL20018.1| cold shock-like protein [Yersinia pestis CO92] gi|145211298|gb|ABP40705.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|149290997|gb|EDM41072.1| cold shock-like protein [Yersinia pestis CA88-4125] gi|152962296|gb|ABS49757.1| cold shock domain protein CspD [Yersinia pseudotuberculosis IP 31758] gi|162354016|gb|ABX87964.1| cold shock domain protein CspD [Yersinia pestis Angola] gi|165913139|gb|EDR31763.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis str. IP275] gi|165923589|gb|EDR40721.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis str. F1991016] gi|165991248|gb|EDR43549.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua str. E1979001] gi|166207404|gb|EDR51884.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua str. B42003004] gi|166962614|gb|EDR58635.1| cold shock domain protein CspD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050670|gb|EDR62078.1| cold shock domain protein CspD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057102|gb|EDR66865.1| cold shock domain protein CspD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751453|gb|ACA68971.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186697835|gb|ACC88464.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|229678959|gb|EEO75062.1| cold shock-like protein [Yersinia pestis Nepal516] gi|229689783|gb|EEO81844.1| cold shock-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697698|gb|EEO87745.1| cold shock-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700732|gb|EEO88761.1| cold shock-like protein [Yersinia pestis Pestoides A] gi|270335486|gb|EFA46263.1| cold shock domain protein CspD [Yersinia pestis KIM D27] gi|320015779|gb|ADV99350.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 87 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D + Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQIVNFDVHEGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|145594319|ref|YP_001158616.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440] gi|159037387|ref|YP_001536640.1| cold-shock DNA-binding domain-containing protein [Salinispora arenicola CNS-205] gi|145303656|gb|ABP54238.1| cold-shock DNA-binding protein family [Salinispora tropica CNB-440] gi|157916222|gb|ABV97649.1| cold-shock DNA-binding domain protein [Salinispora arenicola CNS-205] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFIT +G G DVF+H SA+ ++G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQTSGYRTLEENQRVEFEIAQGQK 57 Query: 62 NGKYSAENLKLV 73 AE ++ + Sbjct: 58 G--PQAEQVRPL 67 >gi|126731183|ref|ZP_01746991.1| cold shock family protein [Sagittula stellata E-37] gi|126708485|gb|EBA07543.1| cold shock family protein [Sagittula stellata E-37] Length = 68 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE G DVF+H SAV +GL L + Q V+Y+ Q Sbjct: 1 MATGTVKWFNTTKGYGFIQPES---GGKDVFVHISAVERSGLTGLADNQKVSYEL-QTGR 56 Query: 62 NGKYSAENLKLV 73 +GK SA NL+L+ Sbjct: 57 DGKESAGNLELL 68 >gi|307332024|ref|ZP_07611115.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306882305|gb|EFN13400.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 69 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +E G DVF+H SA+ S G L EG+ VT++ VQ Sbjct: 1 MATGTVKWFNAEKGFGFIAQ---SEGGPDVFVHYSAINSRGFRELNEGERVTFE-VQQGQ 56 Query: 62 NGKYSAENLKLVP 74 G +A + +P Sbjct: 57 KGPQAANVERALP 69 >gi|300310729|ref|YP_003774821.1| cold-shock DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] gi|300073514|gb|ADJ62913.1| cold-shock DNA-binding domain protein [Herbaspirillum seropedicae SmR1] Length = 68 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H SA+ G L EGQ V +D Q Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|114328842|ref|YP_745999.1| cold shock protein [Granulibacter bethesdensis CGDNIH1] gi|114317016|gb|ABI63076.1| cold shock protein [Granulibacter bethesdensis CGDNIH1] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + G DVF+H +AV +AGL L EGQ VTY+ Sbjct: 1 MATGTVKWFNATKGFGFIMP---QDGGKDVFVHITAVQAAGLRGLDEGQKVTYEVAME-- 55 Query: 62 NGKYSAENLKL 72 GK +A NL++ Sbjct: 56 RGKAAATNLRV 66 >gi|92118260|ref|YP_577989.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91801154|gb|ABE63529.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 69 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + G DVF+H SAV AGL L EGQ V ++ + Sbjct: 1 MTTGTVKWFNGQKGFGFIQP---NDGGSDVFVHISAVERAGLTGLAEGQKVNFELKTDKM 57 Query: 62 NGKYSAENLKL 72 GK SAENL L Sbjct: 58 RGKVSAENLSL 68 >gi|295112263|emb|CBL29013.1| cold-shock DNA-binding protein family [Synergistetes bacterium SGP1] Length = 66 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFIT + G DVF+H SA+ G L EGQ V+++ V N Sbjct: 1 MAQGTVKWFNESKGYGFIT----ADEGKDVFVHYSAIQGDGFKTLAEGQKVSFEIV-NGE 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 KGPQAANVEKL 66 >gi|295837165|ref|ZP_06824098.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|302521137|ref|ZP_07273479.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] gi|318058035|ref|ZP_07976758.1| cold shock protein [Streptomyces sp. SA3_actG] gi|318079486|ref|ZP_07986818.1| cold shock protein [Streptomyces sp. SA3_actF] gi|295826381|gb|EFG64808.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|302430032|gb|EFL01848.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q VT+D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVTFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 58 G--PQAENVSAL 67 >gi|256375184|ref|YP_003098844.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] gi|255919487|gb|ACU34998.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] Length = 68 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N +KG+GFI+P+ G DVF+H S + G L E Q V ++ Q Sbjct: 1 MAVQGTVKWFNAEKGFGFISPD---NGGADVFVHYSEIQVNGYRTLEENQRVEFEIGQGQ 57 Query: 61 ANGKYSAE 68 + A Sbjct: 58 KGPQAQAV 65 >gi|294101897|ref|YP_003553755.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] gi|293616877|gb|ADE57031.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N KGYGFIT T+ G D+F+H SA+ + G L EGQ V+++ V+ Sbjct: 1 MTTQGTVKWFNASKGYGFIT----TDEGKDIFVHFSAIQTEGFKTLEEGQRVSFEIVEG- 55 Query: 61 ANGKYSAENLKL 72 G+ +A K+ Sbjct: 56 PKGEQAANVEKI 67 >gi|254470899|ref|ZP_05084302.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio sp. JE062] gi|211960041|gb|EEA95238.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio sp. JE062] Length = 68 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI PE + DVF+H SAV +GL L +GQ VT++ + Sbjct: 1 MAKGTVKWFNTTKGFGFIAPE---DGSKDVFVHISAVERSGLSTLADGQEVTFEL-ETGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA NL+ V Sbjct: 57 DGRQSAVNLETV 68 >gi|134095623|ref|YP_001100698.1| RNA chaperone [Herminiimonas arsenicoxydans] gi|152983285|ref|YP_001354206.1| cold-shock DNA-binding domain-containing protein [Janthinobacterium sp. Marseille] gi|329905635|ref|ZP_08274166.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480] gi|133739526|emb|CAL62577.1| Cold shock-like protein CspD (CSP-D) [Herminiimonas arsenicoxydans] gi|151283362|gb|ABR91772.1| cold-shock DNA-binding domain protein [Janthinobacterium sp. Marseille] gi|327547557|gb|EGF32363.1| Cold shock protein CspG [Oxalobacteraceae bacterium IMCC9480] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H SA+ G L EGQ V ++ Q Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|146280323|ref|YP_001170479.1| hypothetical protein Rsph17025_4329 [Rhodobacter sphaeroides ATCC 17025] gi|145558564|gb|ABP73174.1| hypothetical protein Rsph17025_4329 [Rhodobacter sphaeroides ATCC 17025] Length = 68 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G DVF+H SA+ AG+ L +GQ VT+D + D Sbjct: 1 MATGTVKWFNTTKGFGFIAPAG---GSKDVFVHISALERAGIRQLDDGQAVTFDL-ERDR 56 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 57 NGRESATNLAL 67 >gi|27383360|ref|NP_774889.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27356535|dbj|BAC53514.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP KGYGFI P+ G+DVF+H SAV AG +L EG V++D V+N Sbjct: 1 MAIGTVKWFNPTKGYGFIQPDS---GGNDVFVHISAVEKAGFTSLAEGAKVSFDIVKN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENL++ Sbjct: 56 RGKESAENLRI 66 >gi|297159497|gb|ADI09209.1| putative cold shock protein [Streptomyces bingchenggensis BCW-1] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q VT+D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQAVTFDVTQGPK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENVS 65 >gi|242373700|ref|ZP_04819274.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W1] gi|242348668|gb|EES40270.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W1] Length = 77 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 11 IMKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQSVEFEVVEGD 66 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 67 -RGPQAANVVKL 77 >gi|30249291|ref|NP_841361.1| cold shock DNA-binding domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30180610|emb|CAD85223.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + +D+F H SA+ G L EGQ V++D Q Sbjct: 1 MTTGTVKWFNDAKGFGFITPD---DGSEDLFAHFSAINMNGFKTLREGQKVSFDVTQGQK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|260574813|ref|ZP_05842815.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] gi|259022818|gb|EEW26112.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] Length = 68 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI PEG DVF+H +A+ AG+ +L +GQ VT+D + Sbjct: 1 MAKGTVKWFNATKGFGFIAPEG---GKKDVFVHITALERAGIRSLADGQAVTFDI-EAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESATNLAL 67 >gi|291616667|ref|YP_003519409.1| CspE [Pantoea ananatis LMG 20103] gi|304395648|ref|ZP_07377531.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|308186006|ref|YP_003930137.1| Cold shock-like protein cspE (CSP-E) [Pantoea vagans C9-1] gi|317047280|ref|YP_004114928.1| cold-shock DNA-binding domain-containing protein [Pantoea sp. At-9b] gi|291151697|gb|ADD76281.1| CspE [Pantoea ananatis LMG 20103] gi|304356942|gb|EFM21306.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|308056516|gb|ADO08688.1| Cold shock-like protein cspE (CSP-E) [Pantoea vagans C9-1] gi|316948897|gb|ADU68372.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b] gi|327393093|dbj|BAK10515.1| cold shock-like protein CspE [Pantoea ananatis AJ13355] Length = 69 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-DGAKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVISL 69 >gi|304321935|ref|YP_003855578.1| Cold-shock DNA-binding domain protein [Parvularcula bermudensis HTCC2503] gi|303300837|gb|ADM10436.1| Cold-shock DNA-binding domain protein [Parvularcula bermudensis HTCC2503] Length = 69 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+ E G DVF+H SAV AGL L + Q V+Y+ VQ D Sbjct: 1 MATGTVKWFNAEKGFGFIKPD---EGGQDVFVHISAVQEAGLKGLDDNQRVSYEMVQ-DR 56 Query: 62 NGKYSAENLKLV 73 G+ SA LKL+ Sbjct: 57 RGRSSAGELKLM 68 >gi|296130972|ref|YP_003638222.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] gi|296022787|gb|ADG76023.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI PE + G DVF+H SA+ + G +L E Q V +D VQ Sbjct: 1 MPTGIVKWFNAEKGFGFIAPE---DGGPDVFVHYSAIQTQGYRSLEENQRVQFD-VQAGP 56 Query: 62 NGKYSAEN 69 G ++ Sbjct: 57 KGPQASNV 64 >gi|312829285|emb|CBX34127.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 66 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E G DVF+H SA+A G +L EGQ V +D V+ D Sbjct: 1 MNNGTVKWFNAEKGFGFIERE----DGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGD- 55 Query: 62 NGKYSAENLKL 72 G+ +A +K+ Sbjct: 56 RGEQAANVVKI 66 >gi|229820912|ref|YP_002882438.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM 12333] gi|229566825|gb|ACQ80676.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM 12333] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI +G G DVF+H SA+ S G +L E Q V ++ Q Sbjct: 1 MAQGTVKWFNSEKGYGFIAQDG---GGADVFVHYSAIESDGYRSLEEAQRVEFEITQGPK 57 Query: 62 NGKYSAENLKLV 73 AE+++ V Sbjct: 58 G--PQAESVRAV 67 >gi|75676560|ref|YP_318981.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255] gi|74421430|gb|ABA05629.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi Nb-255] Length = 69 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + G+DVF+H SAV AGL L EGQ V ++ + Sbjct: 1 MTTGTVKWFNGQKGFGFIQP---NDGGNDVFVHISAVERAGLSGLNEGQQVNFELKTDKM 57 Query: 62 NGKYSAENLKL 72 GK SAENL L Sbjct: 58 RGKVSAENLSL 68 >gi|294101358|ref|YP_003553216.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] gi|293616338|gb|ADE56492.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] Length = 66 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFIT T+ G DVF+H SA+ G L E Q V++D Q + Sbjct: 1 MAQGTVKWFNDSKGYGFIT----TDEGKDVFVHYSAIMGDGFKTLAENQRVSFDVTQGE- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 KGPQAANVQKL 66 >gi|229819166|ref|YP_002880692.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM 12333] gi|229565079|gb|ACQ78930.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM 12333] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI PE + DVF H SA+ + G +L E Q V +D Q Sbjct: 1 MTIGTVKWFNAEKGFGFIAPE---DGSADVFAHYSAIVADGFRSLEENQRVEFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--PQASNIRPL 67 >gi|153813260|ref|ZP_01965928.1| hypothetical protein RUMOBE_03677 [Ruminococcus obeum ATCC 29174] gi|149830673|gb|EDM85764.1| hypothetical protein RUMOBE_03677 [Ruminococcus obeum ATCC 29174] gi|295108549|emb|CBL22502.1| cold-shock DNA-binding protein family [Ruminococcus obeum A2-162] Length = 66 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ VTYD + A Sbjct: 1 MNKGTVKWFNAEKGYGFIT----GEDGADVFVHFSAINGEGFKSLDEGQAVTYDLTEG-A 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGMQAANVTKL 66 >gi|115377442|ref|ZP_01464645.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|115365540|gb|EAU64572.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] Length = 100 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +G G+DVF H +A+ G L EGQ V +D + Sbjct: 34 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLQEGQKVQFDVARGPK 90 Query: 62 NGKYSAENLK 71 A+N++ Sbjct: 91 G--LQAQNVR 98 >gi|152964189|ref|YP_001359973.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] gi|151358706|gb|ABS01709.1| putative cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI +G G DVF+H SA+ G +L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIEQDG---GGPDVFVHYSAIGGNGYRSLEENQRVEFEVTQGQK 57 Query: 62 NGKYSAENLKLV 73 AE+++ + Sbjct: 58 G--PQAEDVRAL 67 >gi|74272681|gb|ABA01136.1| putative nucleic acid-binding protein [Chlamydomonas incerta] Length = 226 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N KG+GFITP G G+D+F+H++ + S G +L EG+ V ++ V+ Sbjct: 5 LRQQGTVKWFNATKGFGFITPGG---GGEDLFVHQTNINSEGFRSLREGEAVEFE-VEAG 60 Query: 61 ANGKYSAENLK 71 +G+ A N+ Sbjct: 61 PDGRSKAVNVT 71 >gi|299892776|gb|ADJ57697.1| cold shock protein [Caulobacter crescentus NA1000] Length = 176 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ V Y+ Q+ +G Sbjct: 110 TGVVKWFNTTKGFGFIQPD---NGGGDVFVHISAVERAGLRGLNEGQQVGYELEQDRRSG 166 Query: 64 KYSAENLKLV 73 K SA NL+++ Sbjct: 167 KTSAGNLRIL 176 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+NP KG+GFI PE + G DVF+H +AV +GL L EG V Y+ ++ Sbjct: 1 MANGVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRR 57 Query: 62 NGKYSAENLKL 72 +GK SA L++ Sbjct: 58 SGKTSAGQLRV 68 >gi|125602074|gb|EAZ41399.1| hypothetical protein OsJ_25920 [Oryza sativa Japonica Group] Length = 238 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KG+GFITP+ + G+D+F+H+S++ S G +L +G +V + + +G Sbjct: 7 KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVG-SGNDG 62 Query: 64 KYSAENLK 71 + A N+ Sbjct: 63 RTKAVNVT 70 >gi|329940593|ref|ZP_08289874.1| cold shock protein [Streptomyces griseoaurantiacus M045] gi|329300654|gb|EGG44551.1| cold shock protein [Streptomyces griseoaurantiacus M045] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H SA+ S+G L EGQ VT+D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSSGFRELQEGQAVTFDVTQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN+ LV Sbjct: 58 G--PQAENINLV 67 >gi|223982871|ref|ZP_03633090.1| hypothetical protein HOLDEFILI_00364 [Holdemania filiformis DSM 12042] gi|223965156|gb|EEF69449.1| hypothetical protein HOLDEFILI_00364 [Holdemania filiformis DSM 12042] Length = 69 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KGYGFI+ + D+F+H S + +G +L EGQ V+YD ++ Sbjct: 1 MNTGKVKWFNAEKGYGFISDDNGQ---GDIFVHFSGINGSGYKSLEEGQKVSYDVENDER 57 Query: 62 NGKYSAENLKLV 73 +GK A N+ ++ Sbjct: 58 SGKTRAVNVTVL 69 >gi|206895854|ref|YP_002247469.1| hypothetical protein COPRO5265_1161 [Coprothermobacter proteolyticus DSM 5265] gi|206738471|gb|ACI17549.1| conserved domain protein [Coprothermobacter proteolyticus DSM 5265] Length = 89 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW++ KGYGFIT + + DVF+H SA+ G +L +G V ++ V N Sbjct: 23 MYTGTVKWFDAKKGYGFITRD---DGEGDVFVHFSAIEGNGFKSLDQGDKVEFEIV-NGP 78 Query: 62 NGKYSAENLK 71 G +A+ +K Sbjct: 79 KGPQAAKVVK 88 >gi|15676734|ref|NP_273879.1| cold-shock domain-contain protein [Neisseria meningitidis MC58] gi|59800853|ref|YP_207565.1| CspA [Neisseria gonorrhoeae FA 1090] gi|121634616|ref|YP_974861.1| putative transcriptional regulator [Neisseria meningitidis FAM18] gi|194098153|ref|YP_002001201.1| cold-shock domain family protein [Neisseria gonorrhoeae NCCP11945] gi|239998604|ref|ZP_04718528.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|240013727|ref|ZP_04720640.1| transcriptional regulator [Neisseria gonorrhoeae DGI18] gi|240016165|ref|ZP_04722705.1| transcriptional regulator [Neisseria gonorrhoeae FA6140] gi|240080309|ref|ZP_04724852.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|240112520|ref|ZP_04727010.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|240115260|ref|ZP_04729322.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|240117547|ref|ZP_04731609.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|240120797|ref|ZP_04733759.1| transcriptional regulator [Neisseria gonorrhoeae PID24-1] gi|240123102|ref|ZP_04736058.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|240125353|ref|ZP_04738239.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|240127806|ref|ZP_04740467.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|254493324|ref|ZP_05106495.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|254804709|ref|YP_003082930.1| putative cold-shock protein [Neisseria meningitidis alpha14] gi|260440922|ref|ZP_05794738.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|268594462|ref|ZP_06128629.1| cold-shock domain-containing protein [Neisseria gonorrhoeae 35/02] gi|268596458|ref|ZP_06130625.1| cold-shock domain-containing protein [Neisseria gonorrhoeae FA19] gi|268598590|ref|ZP_06132757.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268600943|ref|ZP_06135110.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268603250|ref|ZP_06137417.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268681730|ref|ZP_06148592.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268683957|ref|ZP_06150819.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|268686202|ref|ZP_06153064.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291044245|ref|ZP_06569954.1| cold-shock domain-containing protein [Neisseria gonorrhoeae DGI2] gi|293399442|ref|ZP_06643595.1| cold shock protein (beta-ribbon, CspA family) [Neisseria gonorrhoeae F62] gi|298368622|ref|ZP_06979940.1| cold shock transcription regulator protein [Neisseria sp. oral taxon 014 str. F0314] gi|313668692|ref|YP_004048976.1| transcriptional regulator [Neisseria lactamica ST-640] gi|319637942|ref|ZP_07992708.1| transcriptional regulator [Neisseria mucosa C102] gi|7226073|gb|AAF41249.1| cold-shock domain family protein [Neisseria meningitidis MC58] gi|59717748|gb|AAW89153.1| putative cold shock protein [Neisseria gonorrhoeae FA 1090] gi|120866322|emb|CAM10063.1| putative transcriptional regulator [Neisseria meningitidis FAM18] gi|193933443|gb|ACF29267.1| cold-shock domain family protein [Neisseria gonorrhoeae NCCP11945] gi|226512364|gb|EEH61709.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|254668251|emb|CBA05095.1| putative cold-shock protein [Neisseria meningitidis alpha14] gi|254670465|emb|CBA06133.1| cold-shock DNA-binding domain [Neisseria meningitidis alpha153] gi|254672382|emb|CBA05647.1| cold-shock DNA-binding domain [Neisseria meningitidis alpha275] gi|261392810|emb|CAX50391.1| putative cold shock protein [Neisseria meningitidis 8013] gi|268547851|gb|EEZ43269.1| cold-shock domain-containing protein [Neisseria gonorrhoeae 35/02] gi|268550246|gb|EEZ45265.1| cold-shock domain-containing protein [Neisseria gonorrhoeae FA19] gi|268582721|gb|EEZ47397.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268585074|gb|EEZ49750.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268587381|gb|EEZ52057.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268622014|gb|EEZ54414.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268624241|gb|EEZ56641.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|268626486|gb|EEZ58886.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291011139|gb|EFE03135.1| cold-shock domain-containing protein [Neisseria gonorrhoeae DGI2] gi|291610011|gb|EFF39133.1| cold shock protein (beta-ribbon, CspA family) [Neisseria gonorrhoeae F62] gi|298282625|gb|EFI24112.1| cold shock transcription regulator protein [Neisseria sp. oral taxon 014 str. F0314] gi|308389012|gb|ADO31332.1| cold-shock domain-containing protein [Neisseria meningitidis alpha710] gi|309379406|emb|CBX21973.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006154|emb|CBN87615.1| putative transcriptional regulator [Neisseria lactamica 020-06] gi|317401097|gb|EFV81752.1| transcriptional regulator [Neisseria mucosa C102] gi|319410197|emb|CBY90535.1| putative cold shock protein [Neisseria meningitidis WUE 2594] gi|325127943|gb|EGC50845.1| cold-shock DNA-binding domain protein [Neisseria meningitidis N1568] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQRVSFDVT-TGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|238063836|ref|ZP_04608545.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|302866724|ref|YP_003835361.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029] gi|315503139|ref|YP_004082026.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|237885647|gb|EEP74475.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|302569583|gb|ADL45785.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC 27029] gi|315409758|gb|ADU07875.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFIT +G G DVF+H SA+ ++G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNADKGFGFITVDG---GGADVFVHFSAIQTSGYRTLEENQRVEFEIAQGQK 57 Query: 62 NGKYSAENLKLV 73 AE ++ + Sbjct: 58 G--PQAEQVRPI 67 >gi|152969227|ref|YP_001334336.1| cold shock protein CspE [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156934856|ref|YP_001438772.1| cold shock protein CspE [Cronobacter sakazakii ATCC BAA-894] gi|262041285|ref|ZP_06014496.1| CspA family cold shock transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|296103410|ref|YP_003613556.1| cold shock protein CspE [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|330006059|ref|ZP_08305477.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3] gi|150954076|gb|ABR76106.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156533110|gb|ABU77936.1| hypothetical protein ESA_02704 [Cronobacter sakazakii ATCC BAA-894] gi|259041401|gb|EEW42461.1| CspA family cold shock transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|295057869|gb|ADF62607.1| cold shock protein CspE [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295096620|emb|CBK85710.1| cold shock protein E (CspE) [Enterobacter cloacae subsp. cloacae NCTC 9394] gi|328535997|gb|EGF62410.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3] Length = 69 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ N A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVIAL 69 >gi|229544336|ref|ZP_04433395.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] gi|229325475|gb|EEN91151.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI E GDDVF+H +A+ G L EGQ V++D V+ + Sbjct: 1 MQNGKVKWFNNEKGYGFIEVE----GGDDVFVHFTAIQGEGFKTLEEGQAVSFDIVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAANVTKL 66 >gi|134095543|ref|YP_001100618.1| cold shock DNA -binding domain-containing protein [Herminiimonas arsenicoxydans] gi|133739446|emb|CAL62496.1| Cold shock protein CspD [Herminiimonas arsenicoxydans] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H SA+ G L EGQ V+++ Q Sbjct: 1 MQTGTVKWFNDSKGFGFITPDS---GGEDLFAHFSAITMEGFKTLKEGQKVSFEVTQGPK 57 Query: 62 NGKYSAENLK 71 A N+K Sbjct: 58 G--KQASNIK 65 >gi|117927601|ref|YP_872152.1| cold-shock DNA-binding protein family protein [Acidothermus cellulolyticus 11B] gi|117648064|gb|ABK52166.1| cold-shock DNA-binding protein family [Acidothermus cellulolyticus 11B] Length = 92 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI + G DVF+H +A+ G L + Q V ++ VQ Sbjct: 27 QGTVKWFNAEKGFGFIAVD----GGQDVFVHYTAIQMEGYKTLDQNQRVEFEIVQGQKGP 82 Query: 64 KYSAE 68 + A Sbjct: 83 QADAV 87 >gi|319441307|ref|ZP_07990463.1| putative cold shock protein [Corynebacterium variabile DSM 44702] Length = 67 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+ + D+F+H SA+ S+G +L E Q V+++ V+ A Sbjct: 1 MSTGTVKWFNAEKGFGFIAPD---DGSSDIFVHYSAIQSSGFRSLEEDQKVSFE-VEAGA 56 Query: 62 NGKYSAENLKL 72 G +A+ L Sbjct: 57 KGPAAADVTVL 67 >gi|300021896|ref|YP_003754507.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523717|gb|ADJ22186.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 68 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE E G+DVF+H SAV AGL +L EGQ + ++ + Sbjct: 1 MSNGTVKWFNGQKGYGFIQPE---EGGNDVFVHISAVERAGLQSLREGQKIYFE-TERGR 56 Query: 62 NGKYSAENLKLV 73 NGK +A NL+ + Sbjct: 57 NGKIAAVNLRPL 68 >gi|260884227|ref|ZP_05895841.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260873755|gb|EEX80824.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] Length = 64 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 3/64 (4%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ S Sbjct: 1 MKWFNTTKGFGFIQPD---QGGADVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGRSS 57 Query: 67 AENL 70 A+NL Sbjct: 58 ADNL 61 >gi|253579494|ref|ZP_04856763.1| cold-shock protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848995|gb|EES76956.1| cold-shock protein [Ruminococcus sp. 5_1_39BFAA] Length = 66 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ VTYD + A Sbjct: 1 MNKGTVKWFNAEKGYGFIT----GEDGADVFVHFSAINGEGFKSLEEGQAVTYDLTEG-A 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGMQAANVTKL 66 >gi|149203521|ref|ZP_01880491.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035] gi|149143354|gb|EDM31393.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035] Length = 68 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G DVF+H SAV AGL L + Q VT+D ++ Sbjct: 1 MANGTVKWFNSTKGFGFIAPD---NGGKDVFVHISAVERAGLTGLADNQKVTFDI-ESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL+L Sbjct: 57 DGRESASNLQL 67 >gi|284007198|emb|CBA72487.1| cold shock-like protein [Arsenophonus nasoniae] Length = 111 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP ++ DVF+H SA+ G L EGQ V + ++ + G Sbjct: 47 KGQVKWFNESKGFGFITP---SDGSKDVFVHFSAIQGNGFKTLAEGQNVEFTI-EDGSKG 102 Query: 64 KYSAENLKL 72 +A L Sbjct: 103 PAAANVTAL 111 >gi|167647685|ref|YP_001685348.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp. K31] gi|167350115|gb|ABZ72850.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31] Length = 179 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 3/76 (3%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+NP KG+GFI PE + G DVF+H +AV +GL L EG VTY+ ++ Sbjct: 1 MANGVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVTYEMEEDRR 57 Query: 62 NGKYSAENLKLVPKSS 77 +GK SA NL++ + + Sbjct: 58 SGKTSAGNLRVTGQGA 73 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFI P+ G D+F+H SAV AGL L EGQ V Y+ Q+ +GK S Sbjct: 116 VKWFNSTKGFGFIQPD---NGGGDIFVHISAVERAGLRGLNEGQQVGYELEQDRRSGKTS 172 Query: 67 AENLKLV 73 A NL+++ Sbjct: 173 AGNLRIL 179 >gi|149916334|ref|ZP_01904854.1| cold-shock DNA-binding domain protein [Roseobacter sp. AzwK-3b] gi|149809788|gb|EDM69640.1| cold-shock DNA-binding domain protein [Roseobacter sp. AzwK-3b] Length = 68 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V YD Q+ Sbjct: 1 MPTGTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVGYDL-QDGR 56 Query: 62 NGKYSAENLKLV 73 +G+ A +LKL+ Sbjct: 57 DGRQMATDLKLL 68 >gi|329941434|ref|ZP_08290713.1| cold shock protein [Streptomyces griseoaurantiacus M045] gi|11933043|emb|CAC19357.1| cold-shock like protein [Streptomyces nodosus] gi|329299965|gb|EGG43864.1| cold shock protein [Streptomyces griseoaurantiacus M045] Length = 67 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ +++ Sbjct: 57 G--PQADMVRV 65 >gi|290958273|ref|YP_003489455.1| cold shock protein [Streptomyces scabiei 87.22] gi|260647799|emb|CBG70904.1| cold shock protein [Streptomyces scabiei 87.22] Length = 67 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q V++D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQQVSFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN+ V Sbjct: 58 G--PQAENVTPV 67 >gi|326502466|dbj|BAJ95296.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326507234|dbj|BAJ95694.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 264 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI+P+ + +D+F+H+S++ + G +L EG++V + + D +G Sbjct: 8 KGTVKWFNDTKGFGFISPD---DGSEDLFVHQSSIKADGFRSLAEGEVVEFSVSEGD-DG 63 Query: 64 KYSAENLK 71 + A ++ Sbjct: 64 RTKAVDVT 71 >gi|188996315|ref|YP_001930566.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|225848260|ref|YP_002728423.1| hypothetical protein SULAZ_0431 [Sulfurihydrogenibium azorense Az-Fu1] gi|188931382|gb|ACD66012.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|225643394|gb|ACN98444.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 68 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KG+GFIT + + DVF+H SA+ S G L EGQ V ++ Q++ Sbjct: 1 MRITGTVKWFNSKKGFGFITRD---DGQGDVFVHFSAIQSRGFKTLEEGQKVEFEIAQDE 57 Query: 61 ANGKYSAENLKL 72 G +A +++ Sbjct: 58 -KGPKAANVVRV 68 >gi|124267649|ref|YP_001021653.1| cold-shock DNA-binding protein family protein [Methylibium petroleiphilum PM1] gi|124260424|gb|ABM95418.1| cold-shock DNA-binding protein family [Methylibium petroleiphilum PM1] Length = 89 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+DVF H SA+ G L +G V+++ V + Sbjct: 1 MVNGTVKWFNDAKGFGFIEPEG---GGEDVFAHFSAILMDGFRTLKQGARVSFELV-DGP 56 Query: 62 NGKYSAENLKLVPKSSN 78 GK A+N+ + ++ Sbjct: 57 KGKL-AQNIAPLESRAD 72 >gi|224475930|ref|YP_002633536.1| putative cold-shock protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420537|emb|CAL27351.1| putative cold-shock protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 67 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E +GDDVF+H SA+ G L EGQ V +D V+ D Sbjct: 1 MNNGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQGDGYKTLEEGQSVDFDIVEGD- 55 Query: 62 NGKYSAENLKL 72 G+ +A +K+ Sbjct: 56 RGEQAANVVKM 66 >gi|148272792|ref|YP_001222353.1| putative cold shock protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170781984|ref|YP_001710316.1| cold shock protein [Clavibacter michiganensis subsp. sepedonicus] gi|147830722|emb|CAN01662.1| putative cold shock protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169156552|emb|CAQ01703.1| cold shock protein [Clavibacter michiganensis subsp. sepedonicus] Length = 67 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+ DVF H SA+A+ G +L E Q V ++ Q Sbjct: 1 MATGTVKWFNAEKGFGFIAPD---NGTADVFAHYSAIATGGYKSLDENQKVEFEVAQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPL 67 >gi|54303445|ref|YP_133438.1| putative cold shock protein [Photobacterium profundum SS9] gi|46916875|emb|CAG23638.1| putative cold shock protein [Photobacterium profundum SS9] Length = 104 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 40 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 95 Query: 64 KYSAENLKL 72 +A + + Sbjct: 96 LQAANVVAI 104 >gi|328884303|emb|CCA57542.1| Cold shock protein CspD [Streptomyces venezuelae ATCC 10712] Length = 67 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E QLVT+D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINANGFRSLEENQLVTFDVTQGPK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENVS 65 >gi|150376596|ref|YP_001313192.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|307315623|ref|ZP_07595160.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307321715|ref|ZP_07601104.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|150031143|gb|ABR63259.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] gi|306892612|gb|EFN23409.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306898690|gb|EFN29353.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 69 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ ++Y+ +++ Sbjct: 1 MTTGTVKWFNSTKGFGFIEPD---NGGADAFVHISAVERAGMREIVEGQKLSYELERDNK 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKMSACNLQ 67 >gi|256374593|ref|YP_003098253.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] gi|255918896|gb|ACU34407.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] Length = 68 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI + G DVF+H SA+ G L EG V ++ Q Sbjct: 1 MAVGTVKWFNSEKGYGFIA----ADGGPDVFVHYSAIMMDGFRTLAEGDRVEFEI-QAGR 55 Query: 62 NGKYSAENLK 71 +G+ A +++ Sbjct: 56 DGRSQASDVR 65 >gi|324998904|ref|ZP_08120016.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia sp. P1] Length = 67 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 3/65 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGF+ P+G G DVF+H SA+ + G L EGQ V++D Q Sbjct: 1 MAEGTVKWFNSEKGYGFLAPDG---GGADVFVHYSAIQTQGYKTLDEGQRVSFDIEQGQK 57 Query: 62 NGKYS 66 + S Sbjct: 58 GPQAS 62 >gi|323702916|ref|ZP_08114574.1| cold-shock DNA-binding domain protein [Desulfotomaculum nigrificans DSM 574] gi|323532174|gb|EGB22055.1| cold-shock DNA-binding domain protein [Desulfotomaculum nigrificans DSM 574] Length = 65 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI E+G DVF+H SA+ + G L EGQLV +D V+ A G Sbjct: 2 QGKVKWFNANKGYGFIE----AETGSDVFVHYSAIQAEGYRTLEEGQLVQFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|144899530|emb|CAM76394.1| Cold-shock protein, DNA-binding [Magnetospirillum gryphiswaldense MSR-1] Length = 70 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + +D F+H SAV +G+ +L EGQ + Y+ V + Sbjct: 1 MATGTVKWFNAQKGFGFIAPD---DGSNDAFVHISAVERSGIGDLREGQKIGYELVADRR 57 Query: 62 NGKYSAENLKLV 73 +GK SA+NLKLV Sbjct: 58 SGKMSADNLKLV 69 >gi|238792422|ref|ZP_04636056.1| Cold shock-like protein cspD [Yersinia intermedia ATCC 29909] gi|238728348|gb|EEQ19868.1| Cold shock-like protein cspD [Yersinia intermedia ATCC 29909] Length = 85 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|150389414|ref|YP_001319463.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149949276|gb|ABR47804.1| putative cold-shock DNA-binding domain protein [Alkaliphilus metalliredigens QYMF] Length = 66 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFIT E +GDDVF+H SA+ G L EGQ V ++ +Q D Sbjct: 1 MEKGTVKWFNSEKGYGFITRE----NGDDVFVHFSAITMDGFKTLEEGQAVQFEIIQGDK 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQATNVE 64 >gi|134099636|ref|YP_001105297.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291005458|ref|ZP_06563431.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|133912259|emb|CAM02372.1| cold-shock DNA-binding domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 66 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+ + G DVF+H SA+ + G +L E Q V Y+ Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAPD---DGGPDVFVHYSAIDAGGFRSLEEDQRVNYEVTQG-P 56 Query: 62 NGKYSAEN 69 G +A Sbjct: 57 KGPQAASV 64 >gi|238789632|ref|ZP_04633415.1| Cold shock-like protein cspD [Yersinia frederiksenii ATCC 33641] gi|238722185|gb|EEQ13842.1| Cold shock-like protein cspD [Yersinia frederiksenii ATCC 33641] Length = 85 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|315658306|ref|ZP_07911178.1| cold shock protein CspA [Staphylococcus lugdunensis M23590] gi|315496635|gb|EFU84958.1| cold shock protein CspA [Staphylococcus lugdunensis M23590] Length = 76 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 11 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQSVEFEVVEGD- 65 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 66 RGPQAANVVKL 76 >gi|261222631|ref|ZP_05936912.1| cold-shock DNA-binding domain-containing protein [Brucella ceti B1/94] gi|261318104|ref|ZP_05957301.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261758673|ref|ZP_06002382.1| cold-shock DNA-binding domain-containing protein [Brucella sp. F5/99] gi|265984538|ref|ZP_06097273.1| cold-shock DNA-binding domain-containing protein [Brucella sp. 83/13] gi|265999381|ref|ZP_05466081.2| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260921215|gb|EEX87868.1| cold-shock DNA-binding domain-containing protein [Brucella ceti B1/94] gi|261297327|gb|EEY00824.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261738657|gb|EEY26653.1| cold-shock DNA-binding domain-containing protein [Brucella sp. F5/99] gi|263093577|gb|EEZ17602.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|264663130|gb|EEZ33391.1| cold-shock DNA-binding domain-containing protein [Brucella sp. 83/13] Length = 64 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 3/64 (4%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V+Y+ VQ+ +G+ S Sbjct: 1 MKWFNTTKGFGFIQPD---QGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRRSGRSS 57 Query: 67 AENL 70 A+NL Sbjct: 58 ADNL 61 >gi|239826758|ref|YP_002949382.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70] gi|239807051|gb|ACS24116.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70] Length = 66 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQHGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|29830475|ref|NP_825109.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29607587|dbj|BAC71644.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 68 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVDFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ ++L Sbjct: 57 G--PQADMVRL 65 >gi|291546919|emb|CBL20027.1| cold-shock DNA-binding protein family [Ruminococcus sp. SR1/5] Length = 66 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ V+YD + A Sbjct: 1 MNKGTVKWFNAEKGYGFIT----GEDGQDVFVHFSAINGEGFKSLEEGQAVSYDLTEG-A 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGMQAANVTKL 66 >gi|257057404|ref|YP_003135236.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] gi|256587276|gb|ACU98409.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] Length = 68 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI + G DVF+H SA+ + G L EG V ++ Sbjct: 1 MAVGTVKWFNAEKGYGFIE----SPDGPDVFVHYSAIQAEGFRTLDEGDRVEFEIT-AGR 55 Query: 62 NGKYSAENLKLV 73 +G+ A +++ + Sbjct: 56 DGRSQAADVRKL 67 >gi|229141918|ref|ZP_04270444.1| hypothetical protein bcere0013_50050 [Bacillus cereus BDRD-ST26] gi|229199306|ref|ZP_04325973.1| hypothetical protein bcere0001_48080 [Bacillus cereus m1293] gi|228584166|gb|EEK42317.1| hypothetical protein bcere0001_48080 [Bacillus cereus m1293] gi|228641533|gb|EEK97838.1| hypothetical protein bcere0013_50050 [Bacillus cereus BDRD-ST26] Length = 65 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V+ A G Sbjct: 2 QGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|158321031|ref|YP_001513538.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158141230|gb|ABW19542.1| cold-shock DNA-binding domain protein [Alkaliphilus oremlandii OhILAs] Length = 66 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI+ E +GDDVF+H SA+ G L EGQ V ++ VQ D Sbjct: 1 MEKGTVKWFNSEKGYGFISRE----NGDDVFVHYSAITMDGFKTLEEGQAVNFEIVQGDK 56 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 57 G--PQATNVT 64 >gi|302544467|ref|ZP_07296809.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653] gi|307327771|ref|ZP_07606955.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|11933034|emb|CAC19354.1| cold-shock like protein [Streptomyces hygroscopicus] gi|297158355|gb|ADI08067.1| putative cold shock protein [Streptomyces bingchenggensis BCW-1] gi|302462085|gb|EFL25178.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653] gi|306886669|gb|EFN17671.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 68 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQK 56 Query: 62 NGKYSAENLKL 72 A+ +++ Sbjct: 57 G--PQADMVRV 65 >gi|148544717|ref|YP_001272087.1| cold-shock DNA-binding protein family protein [Lactobacillus reuteri DSM 20016] gi|184154069|ref|YP_001842410.1| cold shock protein [Lactobacillus reuteri JCM 1112] gi|194466976|ref|ZP_03072963.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri 100-23] gi|227363842|ref|ZP_03847947.1| cold-shock protein [Lactobacillus reuteri MM2-3] gi|325683052|ref|ZP_08162568.1| cold-shock domain family protein [Lactobacillus reuteri MM4-1A] gi|148531751|gb|ABQ83750.1| cold-shock DNA-binding protein family [Lactobacillus reuteri DSM 20016] gi|183225413|dbj|BAG25930.1| cold shock protein [Lactobacillus reuteri JCM 1112] gi|194454012|gb|EDX42909.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri 100-23] gi|227071069|gb|EEI09387.1| cold-shock protein [Lactobacillus reuteri MM2-3] gi|324977402|gb|EGC14353.1| cold-shock domain family protein [Lactobacillus reuteri MM4-1A] Length = 66 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKGYGFIT E SGDDVF+H SA+ G +L+EGQ VT+D + + Sbjct: 1 MEQGTVKWFNDDKGYGFITRE----SGDDVFVHFSAIQGDGFKSLSEGQHVTFDVEEGE- 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGLQAANVVK 65 >gi|293606230|ref|ZP_06688593.1| cold shock transcription regulator protein [Achromobacter piechaudii ATCC 43553] gi|292815377|gb|EFF74495.1| cold shock transcription regulator protein [Achromobacter piechaudii ATCC 43553] gi|317407692|gb|EFV87625.1| cold-shock protein [Achromobacter xylosoxidans C54] Length = 81 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP+ + G+D+F H S++ G L EGQ V ++ +Q G Sbjct: 17 TGTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQG-PKG 72 Query: 64 KYS 66 K + Sbjct: 73 KQA 75 >gi|251810833|ref|ZP_04825306.1| cold shock protein CspA [Staphylococcus epidermidis BCM-HMP0060] gi|293366631|ref|ZP_06613308.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W2(grey)] gi|251805668|gb|EES58325.1| cold shock protein CspA [Staphylococcus epidermidis BCM-HMP0060] gi|291319400|gb|EFE59769.1| cold shock protein CspA [Staphylococcus epidermidis M23864:W2(grey)] Length = 77 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 11 IMKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD 66 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 67 -RGPQAANVVKL 77 >gi|256397223|ref|YP_003118787.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256363449|gb|ACU76946.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 67 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G +L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGSDVFVHYSAIQMDGYRSLEENQRVEFEISQGQK 56 Query: 62 NGKYSAENLKLV 73 A+ ++++ Sbjct: 57 G--PQADMVRVI 66 >gi|15924392|ref|NP_371926.1| major cold shock protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926982|ref|NP_374515.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus N315] gi|21283019|ref|NP_646107.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus MW2] gi|49483592|ref|YP_040816.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486243|ref|YP_043464.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651902|ref|YP_186289.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus COL] gi|82750994|ref|YP_416735.1| cold shock protein [Staphylococcus aureus RF122] gi|87161577|ref|YP_493992.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195129|ref|YP_499930.1| cold shock protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267890|ref|YP_001246833.1| cold-shock DNA-binding domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150393953|ref|YP_001316628.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus JH1] gi|151221525|ref|YP_001332347.1| major cold-shock protein CspA [Staphylococcus aureus subsp. aureus str. Newman] gi|156979721|ref|YP_001441980.1| major cold shock protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509568|ref|YP_001575227.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140629|ref|ZP_03565122.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315273|ref|ZP_04838486.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732039|ref|ZP_04866204.1| major cold shock protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733351|ref|ZP_04867516.1| major cold shock protein [Staphylococcus aureus subsp. aureus TCH130] gi|255006191|ref|ZP_05144792.2| CSD family cold shock protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425466|ref|ZP_05601891.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428126|ref|ZP_05604524.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus 65-1322] gi|257430757|ref|ZP_05607139.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus 68-397] gi|257433517|ref|ZP_05609875.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus E1410] gi|257436358|ref|ZP_05612405.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus M876] gi|257795543|ref|ZP_05644522.1| major cold shock protein CspA [Staphylococcus aureus A9781] gi|258413351|ref|ZP_05681627.1| major cold shock protein CspA [Staphylococcus aureus A9763] gi|258420542|ref|ZP_05683484.1| major cold shock protein CspA [Staphylococcus aureus A9719] gi|258423666|ref|ZP_05686554.1| CSD family cold shock protein [Staphylococcus aureus A9635] gi|258434686|ref|ZP_05688760.1| major cold-shock protein CspA [Staphylococcus aureus A9299] gi|258444738|ref|ZP_05693067.1| major cold shock protein [Staphylococcus aureus A8115] gi|258447427|ref|ZP_05695571.1| major cold shock protein CspA [Staphylococcus aureus A6300] gi|258449268|ref|ZP_05697371.1| major cold shock protein CspA [Staphylococcus aureus A6224] gi|258452191|ref|ZP_05700206.1| cold shock protein cspA [Staphylococcus aureus A5948] gi|258454648|ref|ZP_05702612.1| major cold shock protein CspA [Staphylococcus aureus A5937] gi|262050357|ref|ZP_06023200.1| major cold shock protein CspA [Staphylococcus aureus D30] gi|269203025|ref|YP_003282294.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus ED98] gi|282892895|ref|ZP_06301130.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A8117] gi|282903982|ref|ZP_06311870.1| conserved domain protein [Staphylococcus aureus subsp. aureus C160] gi|282905747|ref|ZP_06313602.1| cold shock protein beta-ribbon CspA family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908718|ref|ZP_06316536.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910982|ref|ZP_06318784.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WBG10049] gi|282914190|ref|ZP_06321977.1| conserved domain protein [Staphylococcus aureus subsp. aureus M899] gi|282916668|ref|ZP_06324426.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus D139] gi|282919112|ref|ZP_06326847.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus C427] gi|282924295|ref|ZP_06331969.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus C101] gi|282927926|ref|ZP_06335535.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A10102] gi|282929069|ref|ZP_06336651.1| cold shock protein cspA [Staphylococcus aureus A9765] gi|283770473|ref|ZP_06343365.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus aureus subsp. aureus H19] gi|283958164|ref|ZP_06375615.1| conserved domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284024402|ref|ZP_06378800.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus 132] gi|293501217|ref|ZP_06667068.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus 58-424] gi|293510178|ref|ZP_06668886.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus M809] gi|293526770|ref|ZP_06671455.1| conserved domain protein [Staphylococcus aureus subsp. aureus M1015] gi|294850737|ref|ZP_06791456.1| cold shock protein [Staphylococcus aureus A9754] gi|295406349|ref|ZP_06816156.1| cold shock protein [Staphylococcus aureus A8819] gi|295427915|ref|ZP_06820547.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275262|ref|ZP_06857769.1| stationary phase/starvation inducible regulatory protein CspD [Staphylococcus aureus subsp. aureus MR1] gi|297207943|ref|ZP_06924375.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244578|ref|ZP_06928461.1| cold shock protein CspB [Staphylococcus aureus A8796] gi|297591124|ref|ZP_06949762.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8] gi|300912027|ref|ZP_07129470.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus TCH70] gi|304381021|ref|ZP_07363676.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81827857|sp|Q6G9F9|CSPA_STAAS RecName: Full=Cold shock protein CspA gi|81828019|sp|Q6GH06|CSPA_STAAR RecName: Full=Cold shock protein CspA gi|81832398|sp|Q7A0X3|CSPA_STAAW RecName: Full=Cold shock protein CspA gi|81832432|sp|Q7A2R8|CSPA_STAAM RecName: Full=Cold shock protein CspA gi|81832507|sp|Q7A5P3|CSPA_STAAN RecName: Full=Cold shock protein CspA gi|81859588|sp|Q5HG18|CSPA_STAAC RecName: Full=Cold shock protein CspA gi|118572254|sp|Q2FH36|CSPA_STAA3 RecName: Full=Cold shock protein CspA gi|118572255|sp|Q2FYN2|CSPA_STAA8 RecName: Full=Cold shock protein CspA gi|118572256|sp|Q2YY16|CSPA_STAAB RecName: Full=Cold shock protein CspA gi|8101860|gb|AAF72664.1|AF259960_1 major cold shock protein CspA [Staphylococcus aureus] gi|13701199|dbj|BAB42494.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus N315] gi|14247173|dbj|BAB57564.1| major cold shock protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204458|dbj|BAB95155.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus MW2] gi|49241721|emb|CAG40411.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244686|emb|CAG43119.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286088|gb|AAW38182.1| cold shock protein, CSD family [Staphylococcus aureus subsp. aureus COL] gi|82656525|emb|CAI80947.1| cold shock protein [Staphylococcus aureus RF122] gi|87127551|gb|ABD22065.1| cold shock protein, CSD family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202687|gb|ABD30497.1| cold shock protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740959|gb|ABQ49257.1| cold-shock DNA-binding protein family [Staphylococcus aureus subsp. aureus JH9] gi|149946405|gb|ABR52341.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus JH1] gi|150374325|dbj|BAF67585.1| major cold-shock protein CspA [Staphylococcus aureus subsp. aureus str. Newman] gi|156721856|dbj|BAF78273.1| major cold shock protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368377|gb|ABX29348.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724230|gb|EES92959.1| major cold shock protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728703|gb|EES97432.1| major cold shock protein [Staphylococcus aureus subsp. aureus TCH130] gi|257271923|gb|EEV04061.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 55/2053] gi|257274967|gb|EEV06454.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus 65-1322] gi|257278885|gb|EEV09504.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus 68-397] gi|257281610|gb|EEV11747.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus E1410] gi|257284640|gb|EEV14760.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus M876] gi|257789515|gb|EEV27855.1| major cold shock protein CspA [Staphylococcus aureus A9781] gi|257839915|gb|EEV64383.1| major cold shock protein CspA [Staphylococcus aureus A9763] gi|257843490|gb|EEV67897.1| major cold shock protein CspA [Staphylococcus aureus A9719] gi|257846164|gb|EEV70190.1| CSD family cold shock protein [Staphylococcus aureus A9635] gi|257849047|gb|EEV73029.1| major cold-shock protein CspA [Staphylococcus aureus A9299] gi|257850231|gb|EEV74184.1| major cold shock protein [Staphylococcus aureus A8115] gi|257853618|gb|EEV76577.1| major cold shock protein CspA [Staphylococcus aureus A6300] gi|257857256|gb|EEV80154.1| major cold shock protein CspA [Staphylococcus aureus A6224] gi|257860128|gb|EEV82961.1| cold shock protein cspA [Staphylococcus aureus A5948] gi|257863031|gb|EEV85795.1| major cold shock protein CspA [Staphylococcus aureus A5937] gi|259161556|gb|EEW46155.1| major cold shock protein CspA [Staphylococcus aureus D30] gi|262075315|gb|ACY11288.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus ED98] gi|269940897|emb|CBI49280.1| cold shock protein [Staphylococcus aureus subsp. aureus TW20] gi|282313682|gb|EFB44075.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus C101] gi|282316922|gb|EFB47296.1| cold shock protein cspA [Staphylococcus aureus subsp. aureus C427] gi|282319155|gb|EFB49507.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus D139] gi|282322258|gb|EFB52582.1| conserved domain protein [Staphylococcus aureus subsp. aureus M899] gi|282324677|gb|EFB54987.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WBG10049] gi|282326982|gb|EFB57277.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331039|gb|EFB60553.1| cold shock protein beta-ribbon CspA family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282590223|gb|EFB95303.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A10102] gi|282591856|gb|EFB96900.1| cold shock protein cspA [Staphylococcus aureus A9765] gi|282595600|gb|EFC00564.1| conserved domain protein [Staphylococcus aureus subsp. aureus C160] gi|282764892|gb|EFC05017.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A8117] gi|283460620|gb|EFC07710.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus aureus subsp. aureus H19] gi|283470617|emb|CAQ49828.1| cold shock protein, CSD family [Staphylococcus aureus subsp. aureus ST398] gi|283790313|gb|EFC29130.1| conserved domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|285817080|gb|ADC37567.1| Cold shock protein CspA [Staphylococcus aureus 04-02981] gi|290920842|gb|EFD97905.1| conserved domain protein [Staphylococcus aureus subsp. aureus M1015] gi|291096222|gb|EFE26483.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus 58-424] gi|291467122|gb|EFF09640.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus M809] gi|294822413|gb|EFG38863.1| cold shock protein [Staphylococcus aureus A9754] gi|294968937|gb|EFG44959.1| cold shock protein [Staphylococcus aureus A8819] gi|295128273|gb|EFG57907.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887411|gb|EFH26312.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178608|gb|EFH37854.1| cold shock protein CspB [Staphylococcus aureus A8796] gi|297576010|gb|EFH94726.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8] gi|298694697|gb|ADI97919.1| cold shock protein [Staphylococcus aureus subsp. aureus ED133] gi|300886273|gb|EFK81475.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus TCH70] gi|302333015|gb|ADL23208.1| putative cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302751231|gb|ADL65408.1| putative cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340437|gb|EFM06376.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438198|gb|ADQ77269.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus TCH60] gi|312829797|emb|CBX34639.1| cold shock protein cspD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131210|gb|EFT87194.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus CGS03] gi|315195294|gb|EFU25681.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus CGS00] gi|315195914|gb|EFU26279.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus CGS01] gi|320140790|gb|EFW32639.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus MRSA131] gi|320142182|gb|EFW34000.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus MRSA177] gi|323438687|gb|EGA96429.1| cold shock protein [Staphylococcus aureus O11] gi|323444056|gb|EGB01667.1| cold shock protein [Staphylococcus aureus O46] gi|329314078|gb|AEB88491.1| Cold shock protein cspA [Staphylococcus aureus subsp. aureus T0131] gi|329725310|gb|EGG61794.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 21189] gi|329733434|gb|EGG69766.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 21193] Length = 66 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQAVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|332971719|gb|EGK10667.1| cold shock protein CspA [Desmospora sp. 8437] Length = 65 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI E GDDVF+H SA+ G L EGQ V ++ V+ G Sbjct: 2 QGKVKWFNAEKGYGFIERE----GGDDVFVHYSAIQEEGFKTLDEGQTVEFEIVEG-PRG 56 Query: 64 KYSAENLK 71 +A +K Sbjct: 57 PQAANVIK 64 >gi|300312332|ref|YP_003776424.1| cold shock-like transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075117|gb|ADJ64516.1| cold shock-like transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 68 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E G+D+F H SA+ S G +L E Q V+++ Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAIQSNGFKSLKENQRVSFEVT-TGP 56 Query: 62 NGKYSAENL 70 GK ++ + Sbjct: 57 KGKQASNIV 65 >gi|239929627|ref|ZP_04686580.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291437949|ref|ZP_06577339.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|294630786|ref|ZP_06709346.1| cold shock transcription regulator protein [Streptomyces sp. e14] gi|291340844|gb|EFE67800.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|292834119|gb|EFF92468.1| cold shock transcription regulator protein [Streptomyces sp. e14] Length = 67 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q V++D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINATGFRSLEENQQVSFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN+ V Sbjct: 58 G--PQAENVTPV 67 >gi|76811741|ref|YP_332524.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|83720401|ref|YP_441317.1| cold-shock domain-contain protein [Burkholderia thailandensis E264] gi|76581194|gb|ABA50669.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|83654226|gb|ABC38289.1| cold-shock domain family protein-related protein [Burkholderia thailandensis E264] Length = 81 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ VQ Sbjct: 15 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQGPK 71 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 72 G--KQASNIQ 79 >gi|169827740|ref|YP_001697898.1| cold shock protein [Lysinibacillus sphaericus C3-41] gi|168992228|gb|ACA39768.1| Cold shock protein [Lysinibacillus sphaericus C3-41] Length = 68 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ +G +KW+N +KGYGFI + G+DVF+H + + G L EGQ V++D V+ + Sbjct: 2 LMQQGIVKWFNNEKGYGFIE----CDDGEDVFVHFTGIQEEGFRTLEEGQKVSFDVVEGN 57 Query: 61 ANGKYSAENLKL 72 G ++ +KL Sbjct: 58 -RGPQASNVVKL 68 >gi|114332012|ref|YP_748234.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas eutropha C91] gi|114309026|gb|ABI60269.1| cold-shock DNA-binding protein family [Nitrosomonas eutropha C91] Length = 67 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + +D+F H SA+ +G L EGQ V+++ Q Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMSGFKTLKEGQKVSFEVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|237746806|ref|ZP_04577286.1| cold-shock DNA-binding family protein [Oxalobacter formigenes HOxBLS] gi|229378157|gb|EEO28248.1| cold-shock DNA-binding family protein [Oxalobacter formigenes HOxBLS] Length = 67 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E G+DVF H SA+ S G +L E Q V++D Sbjct: 1 MATGTVKWFNDSKGFGFITPD---EGGEDVFAHFSAINSEGFKSLKENQRVSFDITTGPK 57 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 58 G--KQASNITVI 67 >gi|41052630|dbj|BAD08139.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group] gi|41052743|dbj|BAD07599.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group] gi|125580606|gb|EAZ21537.1| hypothetical protein OsJ_05164 [Oryza sativa Japonica Group] gi|187609561|gb|ACD13288.1| cold shock domain protein 1 [Oryza sativa Japonica Group] gi|215767546|dbj|BAG99774.1| unnamed protein product [Oryza sativa Japonica Group] Length = 241 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 47/70 (67%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 HRG++KW+N KG+GFI+P+ + +D+F+H+S++ + G +L EG+ V + +++ Sbjct: 6 RHRGTVKWFNDTKGFGFISPD---DGSEDLFVHQSSIKADGFRSLAEGEQVEFAISESE- 61 Query: 62 NGKYSAENLK 71 +G+ A ++ Sbjct: 62 DGRTKAVDVT 71 >gi|220933677|ref|YP_002512576.1| putative cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994987|gb|ACL71589.1| putative cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 67 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFITPE + G DVF+H SA+ ++G L EGQ+V+++ Sbjct: 1 MSKGTVKWFNESKGFGFITPE---DGGKDVFVHFSAIEASGFRTLAEGQMVSFEVTNGPK 57 Query: 62 NGKYSAENLKLV 73 +A N+K V Sbjct: 58 G--LAAANVKPV 67 >gi|295688501|ref|YP_003592194.1| cold-shock DNA-binding domain-containing protein [Caulobacter segnis ATCC 21756] gi|295430404|gb|ADG09576.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC 21756] Length = 175 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ V Y+ Q+ +G Sbjct: 109 TGVVKWFNTTKGFGFIQPD---NGGGDVFVHISAVERAGLRGLNEGQQVGYELEQDRRSG 165 Query: 64 KYSAENLKLV 73 K SA NL+++ Sbjct: 166 KTSAGNLRIL 175 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+NP KG+GFI PE + G DVF+H +AV +GL L EG V Y+ ++ Sbjct: 1 MANGVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRR 57 Query: 62 NGKYSAENLKL 72 +GK SA L++ Sbjct: 58 SGKTSAGQLRV 68 >gi|209547690|ref|YP_002279607.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533446|gb|ACI53381.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 69 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D +++ Sbjct: 1 MTTGTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFDLERDNK 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKMSACNLQ 67 >gi|302530604|ref|ZP_07282946.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] gi|302439499|gb|EFL11315.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] Length = 67 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI + G DVF+H SA+ + G L EG V ++ VQ+ Sbjct: 1 MAVGTVKWFNSEKGYGFIE----SPEGPDVFVHYSAIQADGFRTLDEGDRVEFE-VQSGR 55 Query: 62 NGKYSAENLKLV 73 +G+ A +++ V Sbjct: 56 DGRSQAADVRKV 67 >gi|302878597|ref|YP_003847161.1| cold-shock DNA-binding domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581386|gb|ADL55397.1| cold-shock DNA-binding domain protein [Gallionella capsiferriformans ES-2] Length = 68 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI+P+ + GDD+F H SA+ +G +L EGQ +++D Q Sbjct: 1 MATGTVKWFNDEKGFGFISPD---DGGDDLFAHFSAINISGFKSLKEGQKISFDVAQGPK 57 Query: 62 NGKYSAENLKLV 73 A N+++V Sbjct: 58 G--RQASNIQIV 67 >gi|220911902|ref|YP_002487211.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|219858780|gb|ACL39122.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] Length = 67 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI+P+ +S DVF H SA+ S+G +L E Q V++D Q Sbjct: 1 MATGTVKWFNAEKGFGFISPD---DSSQDVFAHYSAINSSGFRSLEENQKVSFDTEQGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--PQATNIQAL 67 >gi|325981354|ref|YP_004293756.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas sp. AL212] gi|325530873|gb|ADZ25594.1| cold-shock DNA-binding domain protein [Nitrosomonas sp. AL212] Length = 67 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + +D+F H SA+ +G L EGQ V++D Q Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMSGFKTLKEGQKVSFDVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|221639814|ref|YP_002526076.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] gi|221160595|gb|ACM01575.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] Length = 83 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL L++ Q + Y+ Q+ Sbjct: 16 MPTGTVKWFNSTKGFGFIAPD---DGGKDVFVHISAVERAGLKGLSDNQKIGYEL-QSGR 71 Query: 62 NGKYSAENLKLV 73 +G+ SA +L+L+ Sbjct: 72 DGRSSAGDLRLL 83 >gi|253989236|ref|YP_003040592.1| cold shock protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780686|emb|CAQ83848.1| cold shock protein [Photorhabdus asymbiotica] Length = 69 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP + DVF+H SA+ S G L EGQ V ++ Q+ G Sbjct: 5 TGTVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSDGFKTLAEGQKVEFEI-QDGQKG 60 Query: 64 KYSAEN 69 +A Sbjct: 61 PSAANV 66 >gi|170745312|ref|YP_001766769.1| cold-shock DNA-binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170658913|gb|ACB27967.1| cold-shock DNA-binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 69 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AG+ L EGQ V+Y+ + Sbjct: 1 MTIGTVKWFNDTKGFGFIQPD---DGGKDVFVHISAVERAGMQGLNEGQKVSYEMETDRR 57 Query: 62 NGKYSAENLK 71 GK SA +L+ Sbjct: 58 TGKQSAGSLQ 67 >gi|89098567|ref|ZP_01171450.1| cold shock protein [Bacillus sp. NRRL B-14911] gi|89086812|gb|EAR65930.1| cold shock protein [Bacillus sp. NRRL B-14911] Length = 66 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ S G +L EGQ V+++ V+ A Sbjct: 1 MKNGKVKWFNAEKGFGFIE----AEDGNDVFVHYSAIQSEGFKSLEEGQEVSFEVVEG-A 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAANVTKL 66 >gi|241518615|ref|YP_002979243.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863028|gb|ACS60692.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 69 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + ++ +++ Sbjct: 1 MTTGTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFELERDNK 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKMSACNLQ 67 >gi|163856975|ref|YP_001631273.1| cold-shock protein [Bordetella petrii DSM 12804] gi|163260703|emb|CAP43005.1| cold-shock protein [Bordetella petrii] Length = 81 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP+ + G+D+F H S++ G L EGQ V ++ +Q G Sbjct: 17 TGTVKWFNDAKGFGFITPD---DGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIIQG-PKG 72 Query: 64 KYS 66 K + Sbjct: 73 KQA 75 >gi|254786018|ref|YP_003073447.1| cold shock domain-containing protein CspD [Teredinibacter turnerae T7901] gi|237686702|gb|ACR13966.1| cold shock domain protein CspD [Teredinibacter turnerae T7901] Length = 95 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S+V G L GQ V++D Q D Sbjct: 1 MPTGTVKWFNNAKGFGFILPEG---GGEDLFAHYSSVEMDGYRTLKAGQPVSFDIEQGDK 57 Query: 62 NGKYSAENLKLVPKSSN 78 A++++++ ++ Sbjct: 58 G--LHAKHIRVLKTPAS 72 >gi|238749794|ref|ZP_04611299.1| Cold shock-like protein cspD [Yersinia rohdei ATCC 43380] gi|238712449|gb|EEQ04662.1| Cold shock-like protein cspD [Yersinia rohdei ATCC 43380] Length = 85 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|313900176|ref|ZP_07833676.1| cold shock protein CspB [Clostridium sp. HGF2] gi|312955228|gb|EFR36896.1| cold shock protein CspB [Clostridium sp. HGF2] Length = 66 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFIT ++ G D+F+H S++ S G L EGQ V +D V++D Sbjct: 1 MSTGKVKWFNAEKGYGFIT----SDEGKDIFVHYSSIQSDGFRTLEEGQAVNFDVVESDR 56 Query: 62 NGKYSAENLKL 72 A N+ + Sbjct: 57 G--QQAANVTV 65 >gi|163853561|ref|YP_001641604.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218532421|ref|YP_002423237.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240140980|ref|YP_002965460.1| DNA-binding transcriptional repressor [Methylobacterium extorquens AM1] gi|254563491|ref|YP_003070586.1| DNA-binding transcriptional repressor [Methylobacterium extorquens DM4] gi|163665166|gb|ABY32533.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|218524724|gb|ACK85309.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|240010957|gb|ACS42183.1| DNA-binding transcriptional repressor [Methylobacterium extorquens AM1] gi|254270769|emb|CAX26774.1| DNA-binding transcriptional repressor [Methylobacterium extorquens DM4] Length = 69 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE + DVF+H SAV AGL LTEGQ V+Y+ + Sbjct: 1 MSIGTVKWFNEQKGFGFIQPE---DGSKDVFVHISAVERAGLRGLTEGQKVSYEMETDRR 57 Query: 62 NGKYSAENLKL 72 +GK SA L++ Sbjct: 58 SGKQSAGQLQV 68 >gi|90021330|ref|YP_527157.1| cold-shock DNA-binding protein family protein [Saccharophagus degradans 2-40] gi|89950930|gb|ABD80945.1| cold-shock DNA-binding protein family [Saccharophagus degradans 2-40] Length = 89 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 7/79 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G+D+F H S++ G L GQ VT++ + D Sbjct: 1 MPTGTVKWFNNAKGFGFILPDA---GGEDLFAHYSSIEMEGYRTLKAGQPVTFEIEKGDK 57 Query: 62 NGKYSAENLKL--VPKSSN 78 A+N++ +P++S Sbjct: 58 G--LHAKNIQCTDLPETSE 74 >gi|148258722|ref|YP_001243307.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp. BTAi1] gi|146410895|gb|ABQ39401.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1] Length = 69 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI P + G DVF+H SAV AGL L EGQ V +D + Sbjct: 1 MPQGTVKWFNGQKGFGFIQP---QDGGTDVFVHISAVERAGLGGLAEGQKVNFDLKTDKM 57 Query: 62 NGKYSAENLKL 72 GK SAENL L Sbjct: 58 RGKVSAENLSL 68 >gi|116250220|ref|YP_766058.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254868|emb|CAK05942.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] Length = 69 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G D F+H SAV AG+ +L EGQ + +D +++ Sbjct: 1 MTTGTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRDLVEGQKIGFDLERDNK 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKMSACNLQ 67 >gi|290476206|ref|YP_003469106.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus bovienii SS-2004] gi|289175539|emb|CBJ82342.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus bovienii SS-2004] Length = 69 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEITEG-AKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVVPI 69 >gi|261343563|ref|ZP_05971208.1| conserved domain protein [Providencia rustigianii DSM 4541] gi|282568712|gb|EFB74247.1| conserved domain protein [Providencia rustigianii DSM 4541] Length = 69 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAITSDGFKTLAEGQRVEFEITEG-PKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVISL 69 >gi|329936006|ref|ZP_08285806.1| cold shock protein [Streptomyces griseoaurantiacus M045] gi|329304484|gb|EGG48362.1| cold shock protein [Streptomyces griseoaurantiacus M045] Length = 67 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q V++D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVSFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 58 G--PQAENVTPM 67 >gi|182679940|ref|YP_001834086.1| cold-shock DNA-binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635823|gb|ACB96597.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 69 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P + DVF+H SAV + L L EGQ+V+Y+ ++ Sbjct: 1 MANGTVKWFNTTKGYGFIAP---QDGSKDVFVHISAVERSQLRELVEGQVVSYELQRDQR 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKESAVNLR 67 >gi|15800338|ref|NP_286350.1| cold shock protein CspE [Escherichia coli O157:H7 EDL933] gi|15829916|ref|NP_308689.1| cold shock protein CspE [Escherichia coli O157:H7 str. Sakai] gi|16128606|ref|NP_415156.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. MG1655] gi|30062187|ref|NP_836358.1| cold shock protein CspE [Shigella flexneri 2a str. 2457T] gi|56479711|ref|NP_706586.2| cold shock protein CspE [Shigella flexneri 2a str. 301] gi|74311159|ref|YP_309578.1| cold shock protein CspE [Shigella sonnei Ss046] gi|82543070|ref|YP_407017.1| cold shock protein CspE [Shigella boydii Sb227] gi|82775893|ref|YP_402240.1| cold shock protein CspE [Shigella dysenteriae Sd197] gi|89107492|ref|AP_001272.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. W3110] gi|110640853|ref|YP_668581.1| cold shock protein CspE [Escherichia coli 536] gi|157157595|ref|YP_001461790.1| cold shock protein CspE [Escherichia coli E24377A] gi|157160119|ref|YP_001457437.1| cold shock protein CspE [Escherichia coli HS] gi|161486286|ref|NP_752643.2| cold shock protein CspE [Escherichia coli CFT073] gi|161504197|ref|YP_001571309.1| cold shock protein CspE [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|168752651|ref|ZP_02777673.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4113] gi|168754726|ref|ZP_02779733.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4401] gi|168770227|ref|ZP_02795234.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4486] gi|168774688|ref|ZP_02799695.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4196] gi|168779115|ref|ZP_02804122.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4076] gi|168786472|ref|ZP_02811479.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC869] gi|168798185|ref|ZP_02823192.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC508] gi|170021018|ref|YP_001725972.1| cold shock protein CspE [Escherichia coli ATCC 8739] gi|170080204|ref|YP_001729524.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170080305|ref|YP_001729625.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170682098|ref|YP_001742740.1| cold shock protein CspE [Escherichia coli SMS-3-5] gi|170767751|ref|ZP_02902204.1| cold shock protein CspE [Escherichia albertii TW07627] gi|187731707|ref|YP_001879293.1| cold shock protein CspE [Shigella boydii CDC 3083-94] gi|188493277|ref|ZP_03000547.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|191167329|ref|ZP_03029145.1| cold shock protein CspE [Escherichia coli B7A] gi|191172339|ref|ZP_03033881.1| cold shock protein CspE [Escherichia coli F11] gi|193063391|ref|ZP_03044481.1| cold shock protein CspE [Escherichia coli E22] gi|193069066|ref|ZP_03050024.1| cold shock protein CspE [Escherichia coli E110019] gi|194427975|ref|ZP_03060520.1| cold shock protein CspE [Escherichia coli B171] gi|194432522|ref|ZP_03064808.1| cold shock protein CspE [Shigella dysenteriae 1012] gi|194437525|ref|ZP_03069622.1| cold shock protein CspE [Escherichia coli 101-1] gi|195936173|ref|ZP_03081555.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4024] gi|208816170|ref|ZP_03257349.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4045] gi|208823205|ref|ZP_03263523.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4042] gi|209399192|ref|YP_002269259.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4115] gi|209917882|ref|YP_002291966.1| cold shock protein CspE [Escherichia coli SE11] gi|215485665|ref|YP_002328096.1| cold shock protein CspE [Escherichia coli O127:H6 str. E2348/69] gi|217324540|ref|ZP_03440624.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14588] gi|218549799|ref|YP_002383590.1| cold shock protein CspE [Escherichia fergusonii ATCC 35469] gi|218553166|ref|YP_002386079.1| cold shock protein CspE [Escherichia coli IAI1] gi|218557563|ref|YP_002390476.1| cold shock protein CspE [Escherichia coli S88] gi|218688447|ref|YP_002396659.1| cold shock protein CspE [Escherichia coli ED1a] gi|218694064|ref|YP_002401731.1| cold shock protein CspE [Escherichia coli 55989] gi|218698996|ref|YP_002406625.1| cold shock protein CspE [Escherichia coli IAI39] gi|218703957|ref|YP_002411476.1| cold shock protein CspE [Escherichia coli UMN026] gi|227884397|ref|ZP_04002202.1| cold shock protein CspE [Escherichia coli 83972] gi|238899902|ref|YP_002925698.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|253774390|ref|YP_003037221.1| cold shock protein CspE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160706|ref|YP_003043814.1| cold shock protein CspE [Escherichia coli B str. REL606] gi|254791790|ref|YP_003076627.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14359] gi|256020576|ref|ZP_05434441.1| cold shock protein CspE [Shigella sp. D9] gi|256023764|ref|ZP_05437629.1| cold shock protein CspE [Escherichia sp. 4_1_40B] gi|260842850|ref|YP_003220628.1| DNA-binding transcriptional repressor CspE [Escherichia coli O103:H2 str. 12009] gi|260853876|ref|YP_003227767.1| DNA-binding transcriptional repressor CspE [Escherichia coli O26:H11 str. 11368] gi|260866772|ref|YP_003233174.1| DNA-binding transcriptional repressor CspE [Escherichia coli O111:H- str. 11128] gi|261224091|ref|ZP_05938372.1| cold shock protein CspE [Escherichia coli O157:H7 str. FRIK2000] gi|261257785|ref|ZP_05950318.1| cold shock protein CspE [Escherichia coli O157:H7 str. FRIK966] gi|291281575|ref|YP_003498393.1| hypothetical protein G2583_0787 [Escherichia coli O55:H7 str. CB9615] gi|293403886|ref|ZP_06647880.1| cold shock-like protein cspE [Escherichia coli FVEC1412] gi|293408749|ref|ZP_06652588.1| cold shock protein cspE [Escherichia coli B354] gi|293413920|ref|ZP_06656569.1| cold shock-like protein cspE [Escherichia coli B185] gi|293418735|ref|ZP_06661170.1| cold shock protein [Escherichia coli B088] gi|298379662|ref|ZP_06989267.1| cold shock protein CspG [Escherichia coli FVEC1302] gi|300817859|ref|ZP_07098073.1| cold shock protein CspE [Escherichia coli MS 107-1] gi|300823062|ref|ZP_07103196.1| cold shock protein CspE [Escherichia coli MS 119-7] gi|300901127|ref|ZP_07119236.1| cold shock protein CspE [Escherichia coli MS 198-1] gi|300907798|ref|ZP_07125415.1| cold shock protein CspE [Escherichia coli MS 84-1] gi|300920567|ref|ZP_07136990.1| cold shock protein CspE [Escherichia coli MS 115-1] gi|300927278|ref|ZP_07143006.1| cold shock protein CspE [Escherichia coli MS 182-1] gi|300931553|ref|ZP_07146869.1| cold shock protein CspE [Escherichia coli MS 187-1] gi|300939622|ref|ZP_07154275.1| cold shock protein CspE [Escherichia coli MS 21-1] gi|300951119|ref|ZP_07164985.1| cold shock protein CspE [Escherichia coli MS 116-1] gi|300959188|ref|ZP_07171269.1| cold shock protein CspE [Escherichia coli MS 175-1] gi|300990086|ref|ZP_07179098.1| cold shock protein CspE [Escherichia coli MS 45-1] gi|300996792|ref|ZP_07181533.1| cold shock protein CspE [Escherichia coli MS 200-1] gi|301025248|ref|ZP_07188814.1| cold shock protein CspE [Escherichia coli MS 69-1] gi|301028903|ref|ZP_07192073.1| cold shock protein CspE [Escherichia coli MS 196-1] gi|301049818|ref|ZP_07196758.1| cold shock protein CspE [Escherichia coli MS 185-1] gi|301302102|ref|ZP_07208235.1| cold shock protein CspE [Escherichia coli MS 124-1] gi|301329140|ref|ZP_07222141.1| cold shock protein CspE [Escherichia coli MS 78-1] gi|301643967|ref|ZP_07243991.1| cold shock protein CspE [Escherichia coli MS 146-1] gi|306812944|ref|ZP_07447137.1| cold shock protein CspE [Escherichia coli NC101] gi|307137241|ref|ZP_07496597.1| cold shock protein CspE [Escherichia coli H736] gi|307312660|ref|ZP_07592292.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|309785945|ref|ZP_07680574.1| cold shock-like protein cspI [Shigella dysenteriae 1617] gi|309795509|ref|ZP_07689926.1| cold shock protein CspE [Escherichia coli MS 145-7] gi|312965070|ref|ZP_07779307.1| cold shock-like protein cspI [Escherichia coli 2362-75] gi|312970704|ref|ZP_07784885.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|331656651|ref|ZP_08357613.1| cold shock protein [Escherichia coli TA206] gi|331661988|ref|ZP_08362911.1| cold shock protein [Escherichia coli TA143] gi|331666976|ref|ZP_08367850.1| cold shock protein [Escherichia coli TA271] gi|331682045|ref|ZP_08382669.1| cold shock protein [Escherichia coli H299] gi|71154156|sp|P0A974|CSPE_ECO57 RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|71154157|sp|P0A973|CSPE_ECOL6 RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|71154158|sp|P0A972|CSPE_ECOLI RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|71154159|sp|P0A975|CSPE_SHIFL RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|12513525|gb|AAG54958.1|AE005242_2 cold shock protein [Escherichia coli O157:H7 str. EDL933] gi|471099|dbj|BAA05856.1| CspE (MsmC) [Escherichia coli] gi|833769|gb|AAA67556.1| gicA [Escherichia coli str. K-12 substr. W3110] gi|1651256|dbj|BAA35266.1| DNA-binding transcriptional repressor [Escherichia coli str. K12 substr. W3110] gi|1786841|gb|AAC73724.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. MG1655] gi|3851642|gb|AAC72388.1| unknown [Vibrio cholerae] gi|13360120|dbj|BAB34085.1| cold shock protein [Escherichia coli O157:H7 str. Sakai] gi|26986712|gb|AAN86720.1| CspE [Escherichia coli] gi|30040432|gb|AAP16164.1| cold shock protein [Shigella flexneri 2a str. 2457T] gi|56383262|gb|AAN42293.2| cold shock protein [Shigella flexneri 2a str. 301] gi|73854636|gb|AAZ87343.1| cold shock protein [Shigella sonnei Ss046] gi|81240041|gb|ABB60751.1| cold shock protein [Shigella dysenteriae Sd197] gi|81244481|gb|ABB65189.1| cold shock protein [Shigella boydii Sb227] gi|110342445|gb|ABG68682.1| cold shock-like protein CspE [Escherichia coli 536] gi|157065799|gb|ABV05054.1| cold shock protein CspE [Escherichia coli HS] gi|157079625|gb|ABV19333.1| cold shock protein CspE [Escherichia coli E24377A] gi|160865544|gb|ABX22167.1| hypothetical protein SARI_02304 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|169755946|gb|ACA78645.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|169888039|gb|ACB01746.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|169888140|gb|ACB01847.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170123239|gb|EDS92170.1| cold shock protein CspE [Escherichia albertii TW07627] gi|170519816|gb|ACB17994.1| cold shock protein CspE [Escherichia coli SMS-3-5] gi|187428699|gb|ACD07973.1| cold shock protein CspE [Shigella boydii CDC 3083-94] gi|187769726|gb|EDU33570.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4196] gi|188013582|gb|EDU51704.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4113] gi|188488476|gb|EDU63579.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|189002843|gb|EDU71829.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4076] gi|189358116|gb|EDU76535.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4401] gi|189360875|gb|EDU79294.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4486] gi|189373655|gb|EDU92071.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC869] gi|189379324|gb|EDU97740.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC508] gi|190902578|gb|EDV62311.1| cold shock protein CspE [Escherichia coli B7A] gi|190907438|gb|EDV67035.1| cold shock protein CspE [Escherichia coli F11] gi|192930975|gb|EDV83579.1| cold shock protein CspE [Escherichia coli E22] gi|192957610|gb|EDV88055.1| cold shock protein CspE [Escherichia coli E110019] gi|194413950|gb|EDX30227.1| cold shock protein CspE [Escherichia coli B171] gi|194419083|gb|EDX35166.1| cold shock protein CspE [Shigella dysenteriae 1012] gi|194423694|gb|EDX39684.1| cold shock protein CspE [Escherichia coli 101-1] gi|208732818|gb|EDZ81506.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4045] gi|208737398|gb|EDZ85082.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4042] gi|209160592|gb|ACI38025.1| cold shock protein CspE [Escherichia coli O157:H7 str. EC4115] gi|209777218|gb|ACI86921.1| cold shock protein [Escherichia coli] gi|209777220|gb|ACI86922.1| cold shock protein [Escherichia coli] gi|209777222|gb|ACI86923.1| cold shock protein [Escherichia coli] gi|209777224|gb|ACI86924.1| cold shock protein [Escherichia coli] gi|209777226|gb|ACI86925.1| cold shock protein [Escherichia coli] gi|209911141|dbj|BAG76215.1| cold shock-like protein [Escherichia coli SE11] gi|215263737|emb|CAS08072.1| DNA-binding transcriptional repressor [Escherichia coli O127:H6 str. E2348/69] gi|217320761|gb|EEC29185.1| cold shock protein CspE [Escherichia coli O157:H7 str. TW14588] gi|218350796|emb|CAU96488.1| DNA-binding transcriptional repressor [Escherichia coli 55989] gi|218357340|emb|CAQ89977.1| DNA-binding transcriptional repressor [Escherichia fergusonii ATCC 35469] gi|218359934|emb|CAQ97477.1| DNA-binding transcriptional repressor [Escherichia coli IAI1] gi|218364332|emb|CAR02005.1| DNA-binding transcriptional repressor [Escherichia coli S88] gi|218368982|emb|CAR16736.1| DNA-binding transcriptional repressor [Escherichia coli IAI39] gi|218426011|emb|CAR06828.1| DNA-binding transcriptional repressor [Escherichia coli ED1a] gi|218431054|emb|CAR11930.1| DNA-binding transcriptional repressor [Escherichia coli UMN026] gi|222032384|emb|CAP75123.1| Cold shock-like protein cspE [Escherichia coli LF82] gi|227838483|gb|EEJ48949.1| cold shock protein CspE [Escherichia coli 83972] gi|238860974|gb|ACR62972.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|242376400|emb|CAQ31099.1| transcription antiterminator and regulator of RNA stability [Escherichia coli BL21(DE3)] gi|253325434|gb|ACT30036.1| cold-shock DNA-binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972607|gb|ACT38278.1| cold shock protein E [Escherichia coli B str. REL606] gi|253976801|gb|ACT42471.1| cold shock protein E [Escherichia coli BL21(DE3)] gi|254591190|gb|ACT70551.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. TW14359] gi|257752525|dbj|BAI24027.1| DNA-binding transcriptional repressor CspE [Escherichia coli O26:H11 str. 11368] gi|257757997|dbj|BAI29494.1| DNA-binding transcriptional repressor CspE [Escherichia coli O103:H2 str. 12009] gi|257763128|dbj|BAI34623.1| DNA-binding transcriptional repressor CspE [Escherichia coli O111:H- str. 11128] gi|260450208|gb|ACX40630.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|281177773|dbj|BAI54103.1| cold shock-like protein [Escherichia coli SE15] gi|284920424|emb|CBG33485.1| cold shock-like protein [Escherichia coli 042] gi|290761448|gb|ADD55409.1| hypothetical protein G2583_0787 [Escherichia coli O55:H7 str. CB9615] gi|291325263|gb|EFE64678.1| cold shock protein [Escherichia coli B088] gi|291428472|gb|EFF01497.1| cold shock-like protein cspE [Escherichia coli FVEC1412] gi|291433978|gb|EFF06951.1| cold shock-like protein cspE [Escherichia coli B185] gi|291471927|gb|EFF14410.1| cold shock protein cspE [Escherichia coli B354] gi|294494060|gb|ADE92816.1| cold shock protein CspE [Escherichia coli IHE3034] gi|298279360|gb|EFI20868.1| cold shock protein CspG [Escherichia coli FVEC1302] gi|299878114|gb|EFI86325.1| cold shock protein CspE [Escherichia coli MS 196-1] gi|300298413|gb|EFJ54798.1| cold shock protein CspE [Escherichia coli MS 185-1] gi|300304394|gb|EFJ58914.1| cold shock protein CspE [Escherichia coli MS 200-1] gi|300314212|gb|EFJ63996.1| cold shock protein CspE [Escherichia coli MS 175-1] gi|300355435|gb|EFJ71305.1| cold shock protein CspE [Escherichia coli MS 198-1] gi|300396117|gb|EFJ79655.1| cold shock protein CspE [Escherichia coli MS 69-1] gi|300400487|gb|EFJ84025.1| cold shock protein CspE [Escherichia coli MS 84-1] gi|300407161|gb|EFJ90699.1| cold shock protein CspE [Escherichia coli MS 45-1] gi|300412430|gb|EFJ95740.1| cold shock protein CspE [Escherichia coli MS 115-1] gi|300416766|gb|EFK00077.1| cold shock protein CspE [Escherichia coli MS 182-1] gi|300449605|gb|EFK13225.1| cold shock protein CspE [Escherichia coli MS 116-1] gi|300455497|gb|EFK18990.1| cold shock protein CspE [Escherichia coli MS 21-1] gi|300460695|gb|EFK24188.1| cold shock protein CspE [Escherichia coli MS 187-1] gi|300524411|gb|EFK45480.1| cold shock protein CspE [Escherichia coli MS 119-7] gi|300529556|gb|EFK50618.1| cold shock protein CspE [Escherichia coli MS 107-1] gi|300842654|gb|EFK70414.1| cold shock protein CspE [Escherichia coli MS 124-1] gi|300844528|gb|EFK72288.1| cold shock protein CspE [Escherichia coli MS 78-1] gi|301077663|gb|EFK92469.1| cold shock protein CspE [Escherichia coli MS 146-1] gi|305853707|gb|EFM54146.1| cold shock protein CspE [Escherichia coli NC101] gi|306907362|gb|EFN37867.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|307552494|gb|ADN45269.1| cold shock-like protein CspE [Escherichia coli ABU 83972] gi|307627938|gb|ADN72242.1| cold shock protein CspE [Escherichia coli UM146] gi|308120884|gb|EFO58146.1| cold shock protein CspE [Escherichia coli MS 145-7] gi|308926056|gb|EFP71534.1| cold shock-like protein cspI [Shigella dysenteriae 1617] gi|309700862|emb|CBJ00159.1| cold shock-like protein [Escherichia coli ETEC H10407] gi|310337353|gb|EFQ02491.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|312290161|gb|EFR18044.1| cold shock-like protein cspI [Escherichia coli 2362-75] gi|312945171|gb|ADR25998.1| cold shock protein CspE [Escherichia coli O83:H1 str. NRG 857C] gi|313649731|gb|EFS14155.1| cold shock-like protein cspI [Shigella flexneri 2a str. 2457T] gi|315059879|gb|ADT74206.1| DNA-binding transcriptional repressor [Escherichia coli W] gi|315135289|dbj|BAJ42448.1| cold shock protein CspE [Escherichia coli DH1] gi|315255074|gb|EFU35042.1| cold shock protein CspE [Escherichia coli MS 85-1] gi|315287050|gb|EFU46465.1| cold shock protein CspE [Escherichia coli MS 110-3] gi|315292127|gb|EFU51479.1| cold shock protein CspE [Escherichia coli MS 153-1] gi|315299117|gb|EFU58371.1| cold shock protein CspE [Escherichia coli MS 16-3] gi|315616459|gb|EFU97076.1| cold shock-like protein cspI [Escherichia coli 3431] gi|320175134|gb|EFW50246.1| Cold shock protein CspE [Shigella dysenteriae CDC 74-1112] gi|320178413|gb|EFW53381.1| Cold shock protein CspE [Shigella boydii ATCC 9905] gi|320185402|gb|EFW60172.1| Cold shock protein CspE [Shigella flexneri CDC 796-83] gi|320193030|gb|EFW67670.1| Cold shock protein CspE [Escherichia coli O157:H7 str. EC1212] gi|320194194|gb|EFW68826.1| Cold shock protein CspE [Escherichia coli WV_060327] gi|320198250|gb|EFW72854.1| Cold shock protein CspE [Escherichia coli EC4100B] gi|320638073|gb|EFX07837.1| cold shock protein CspE [Escherichia coli O157:H7 str. G5101] gi|320643479|gb|EFX12649.1| cold shock protein CspE [Escherichia coli O157:H- str. 493-89] gi|320648814|gb|EFX17441.1| cold shock protein CspE [Escherichia coli O157:H- str. H 2687] gi|320654400|gb|EFX22447.1| cold shock protein CspE [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660081|gb|EFX27611.1| cold shock protein CspE [Escherichia coli O55:H7 str. USDA 5905] gi|320664878|gb|EFX32013.1| cold shock protein CspE [Escherichia coli O157:H7 str. LSU-61] gi|323153655|gb|EFZ39903.1| cold shock-like protein cspI [Escherichia coli EPECa14] gi|323158923|gb|EFZ44934.1| cold shock-like protein cspI [Escherichia coli E128010] gi|323164078|gb|EFZ49886.1| cold shock-like protein cspI [Shigella sonnei 53G] gi|323170751|gb|EFZ56401.1| cold shock-like protein cspI [Escherichia coli LT-68] gi|323179900|gb|EFZ65457.1| cold shock-like protein cspI [Escherichia coli 1180] gi|323184883|gb|EFZ70251.1| cold shock-like protein cspI [Escherichia coli 1357] gi|323191262|gb|EFZ76526.1| cold shock-like protein cspI [Escherichia coli RN587/1] gi|323379557|gb|ADX51825.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323938386|gb|EGB34640.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1520] gi|323943038|gb|EGB39197.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323945099|gb|EGB41161.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323952798|gb|EGB48666.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H252] gi|323958382|gb|EGB54088.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H263] gi|323963193|gb|EGB58761.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H489] gi|323967571|gb|EGB62987.1| cold-shock DNA-binding domain-containing protein [Escherichia coli M863] gi|323972078|gb|EGB67292.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|323976394|gb|EGB71484.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TW10509] gi|324006340|gb|EGB75559.1| cold shock protein CspE [Escherichia coli MS 57-2] gi|324010499|gb|EGB79718.1| cold shock protein CspE [Escherichia coli MS 60-1] gi|324016114|gb|EGB85333.1| cold shock protein CspE [Escherichia coli MS 117-3] gi|324114747|gb|EGC08715.1| cold-shock DNA-binding domain-containing protein [Escherichia fergusonii B253] gi|324116698|gb|EGC10613.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1167] gi|325498195|gb|EGC96054.1| cold shock protein CspE [Escherichia fergusonii ECD227] gi|326341375|gb|EGD65167.1| Cold shock protein CspE [Escherichia coli O157:H7 str. 1044] gi|326345847|gb|EGD69586.1| Cold shock protein CspE [Escherichia coli O157:H7 str. 1125] gi|327254308|gb|EGE65930.1| cold shock-like protein cspI [Escherichia coli STEC_7v] gi|330910385|gb|EGH38895.1| cold shock protein CspE [Escherichia coli AA86] gi|331054899|gb|EGI26908.1| cold shock protein [Escherichia coli TA206] gi|331060410|gb|EGI32374.1| cold shock protein [Escherichia coli TA143] gi|331066200|gb|EGI38084.1| cold shock protein [Escherichia coli TA271] gi|331080724|gb|EGI51898.1| cold shock protein [Escherichia coli H299] gi|332094296|gb|EGI99347.1| cold shock-like protein cspI [Shigella boydii 5216-82] gi|332096862|gb|EGJ01852.1| cold shock-like protein cspI [Shigella dysenteriae 155-74] gi|332341970|gb|AEE55304.1| cold shock-like protein CspI [Escherichia coli UMNK88] gi|332761006|gb|EGJ91294.1| cold shock-like protein cspI [Shigella flexneri 4343-70] gi|332761185|gb|EGJ91471.1| cold shock-like protein cspI [Shigella flexneri 2747-71] gi|332763377|gb|EGJ93617.1| cold shock-like protein cspI [Shigella flexneri K-671] gi|332768274|gb|EGJ98459.1| transcription antiterminator and regulator of RNA stability [Shigella flexneri 2930-71] gi|333007465|gb|EGK26945.1| cold shock-like protein cspI [Shigella flexneri VA-6] gi|333008038|gb|EGK27514.1| cold shock-like protein cspI [Shigella flexneri K-218] gi|333010035|gb|EGK29470.1| cold shock-like protein cspI [Shigella flexneri K-272] gi|333020868|gb|EGK40128.1| cold shock-like protein cspI [Shigella flexneri K-227] gi|333021570|gb|EGK40820.1| cold shock-like protein cspI [Shigella flexneri K-304] Length = 69 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ N A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVIAL 69 >gi|83589095|ref|YP_429104.1| cold-shock DNA-binding protein family protein [Moorella thermoacetica ATCC 39073] gi|83572009|gb|ABC18561.1| cold-shock DNA-binding protein family [Moorella thermoacetica ATCC 39073] Length = 65 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+NP+KGYGFI E G DVF+H SA+ G L EGQ V +D V+ G Sbjct: 2 QGKVKWFNPEKGYGFIERE----DGKDVFVHFSAIQEEGFKTLAEGQEVEFDIVEG-PRG 56 Query: 64 KYSAENLK 71 +A +K Sbjct: 57 PQAANVIK 64 >gi|239980196|ref|ZP_04702720.1| cold shock protein [Streptomyces albus J1074] gi|291452050|ref|ZP_06591440.1| cold shock protein [Streptomyces albus J1074] gi|291354999|gb|EFE81901.1| cold shock protein [Streptomyces albus J1074] Length = 67 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q VT+D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVTFDVTQGPK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENVT 65 >gi|225574379|ref|ZP_03782989.1| hypothetical protein RUMHYD_02448 [Blautia hydrogenotrophica DSM 10507] gi|225038381|gb|EEG48627.1| hypothetical protein RUMHYD_02448 [Blautia hydrogenotrophica DSM 10507] Length = 66 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ V+YD + A Sbjct: 1 MNKGTVKWFNAEKGYGFIT----GEDGADVFVHFSAINGEGFKSLEEGQSVSYDLTEG-A 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGMQAANVTKL 66 >gi|283784399|ref|YP_003364264.1| cold shock-like protein [Citrobacter rodentium ICC168] gi|62126861|gb|AAX64564.1| RNA chaperone, negative regulator of cspA transcription [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|282947853|emb|CBG87413.1| cold shock-like protein [Citrobacter rodentium ICC168] Length = 79 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ N A G Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 70 Query: 64 KYSAENLKL 72 +A L Sbjct: 71 PSAANVTAL 79 >gi|300790362|ref|YP_003770653.1| cold shock protein CspA [Amycolatopsis mediterranei U32] gi|299799876|gb|ADJ50251.1| cold shock protein CspA [Amycolatopsis mediterranei U32] Length = 68 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI + G DVF+H SA+ S G L EG V ++ VQ+ Sbjct: 1 MAVGTVKWFNSEKGYGFIE----STEGPDVFVHYSAIQSEGFRTLDEGDRVEFE-VQSGR 55 Query: 62 NGKYSAENLKLV 73 +G+ A +++ V Sbjct: 56 DGRSQAADVRKV 67 >gi|225023806|ref|ZP_03712998.1| hypothetical protein EIKCOROL_00671 [Eikenella corrodens ATCC 23834] gi|224943405|gb|EEG24614.1| hypothetical protein EIKCOROL_00671 [Eikenella corrodens ATCC 23834] Length = 67 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMNGFKTLKEGQKVSFEVTTGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|227544424|ref|ZP_03974473.1| cold-shock protein [Lactobacillus reuteri CF48-3A] gi|300908271|ref|ZP_07125736.1| cold-shock domain family protein [Lactobacillus reuteri SD2112] gi|77745315|gb|ABB02558.1| putative cold shock protein [Lactobacillus reuteri] gi|227185587|gb|EEI65658.1| cold-shock protein [Lactobacillus reuteri CF48-3A] gi|300894518|gb|EFK87875.1| cold-shock domain family protein [Lactobacillus reuteri SD2112] Length = 66 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKGYGFIT E SGDDVF+H SA+ G +L+EGQ VT++ + + Sbjct: 1 MEQGTVKWFNDDKGYGFITRE----SGDDVFVHFSAIQGDGFKSLSEGQHVTFEVEEGE- 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGLQAANVVK 65 >gi|168185844|ref|ZP_02620479.1| conserved domain protein [Clostridium botulinum C str. Eklund] gi|253681085|ref|ZP_04861888.1| conserved domain protein [Clostridium botulinum D str. 1873] gi|331270523|ref|YP_004397015.1| major cold shock protein [Clostridium botulinum BKT015925] gi|169296006|gb|EDS78139.1| conserved domain protein [Clostridium botulinum C str. Eklund] gi|253562934|gb|EES92380.1| conserved domain protein [Clostridium botulinum D str. 1873] gi|329127073|gb|AEB77018.1| major cold shock protein [Clostridium botulinum BKT015925] Length = 66 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI+ EG DDVF+H SA+ G L EGQ V ++ + A Sbjct: 1 MKTGIVKWFNAEKGFGFISVEGE----DDVFVHFSAIQGDGFKTLEEGQKVEFEVTEG-A 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|163851320|ref|YP_001639363.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|163662925|gb|ABY30292.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] Length = 69 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE + DVF+H SAV AG+ NL EGQ V+Y+ + Sbjct: 1 MSIGTVKWFNDTKGFGFIQPE---DGSKDVFVHISAVERAGMRNLIEGQKVSYEMETDRR 57 Query: 62 NGKYSAENLK 71 +GK SA +L+ Sbjct: 58 SGKQSAGSLQ 67 >gi|281490768|ref|YP_003352748.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|281374537|gb|ADA64058.1| Cold-shock protein [Lactococcus lactis subsp. lactis KF147] Length = 91 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFIT +E G D+F H SA+ S G +L EGQ V +D + Sbjct: 25 IMANGTVKWFNATKGFGFIT----SEDGQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQ 80 Query: 61 ANGKYSAENLK 71 A N+ Sbjct: 81 RG--PQAVNIT 89 >gi|260425753|ref|ZP_05779733.1| conserved domain protein [Citreicella sp. SE45] gi|260423693|gb|EEX16943.1| conserved domain protein [Citreicella sp. SE45] Length = 68 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G DVF+H SA+ AGL L + Q VTYD V++ Sbjct: 1 MANGTVKWFNSTKGFGFIEPE---NGGRDVFVHISAIERAGLTGLADAQKVTYD-VESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESAINLAL 67 >gi|260433151|ref|ZP_05787122.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416979|gb|EEX10238.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 68 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V+Y+ ++ Sbjct: 1 MPTGTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERSGLTGLADNQKVSYEL-EDGR 56 Query: 62 NGKYSAENLKLV 73 +G+ A +LK + Sbjct: 57 DGRQMAADLKPM 68 >gi|332295652|ref|YP_004437575.1| cold-shock DNA-binding domain protein [Thermodesulfobium narugense DSM 14796] gi|332178755|gb|AEE14444.1| cold-shock DNA-binding domain protein [Thermodesulfobium narugense DSM 14796] Length = 70 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFI+ + G+DVF+H SA+ S G +L EGQ VT+D ++ Sbjct: 1 MNKGTVKWFNAEKGYGFIS---NANGGEDVFVHFSAIVSDGFKSLNEGQQVTFDIEKDPK 57 Query: 62 N-GKYSAENLKLV 73 N K A N+K + Sbjct: 58 NSKKLRAVNVKAL 70 >gi|310641348|ref|YP_003946106.1| cold shock-like protein cspb [Paenibacillus polymyxa SC2] gi|309246298|gb|ADO55865.1| Cold shock-like protein cspB [Paenibacillus polymyxa SC2] Length = 65 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI E G+DVF+H SA+ G L EGQ V ++ + + G Sbjct: 2 KGTVKWFNAEKGYGFIQVE----GGEDVFVHFSAIQGDGFKTLEEGQEVEFEITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|115526308|ref|YP_783219.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115520255|gb|ABJ08239.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisA53] Length = 66 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP KGYGFI P + G DVF+H SAV+ AGL L EGQ + ++ V N Sbjct: 1 MASGTVKWFNPTKGYGFIQP---SNGGKDVFVHISAVSRAGLSTLNEGQSLEFEEVAN-- 55 Query: 62 NGKYSAENLKL 72 G+ SAENL++ Sbjct: 56 RGRTSAENLRV 66 >gi|77464163|ref|YP_353667.1| cold-shock DNA-binding protein family protein [Rhodobacter sphaeroides 2.4.1] gi|126463006|ref|YP_001044120.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|146276547|ref|YP_001166706.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|221640032|ref|YP_002526294.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] gi|332559039|ref|ZP_08413361.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides WS8N] gi|77388581|gb|ABA79766.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides 2.4.1] gi|126104670|gb|ABN77348.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17029] gi|145554788|gb|ABP69401.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17025] gi|221160813|gb|ACM01793.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] gi|332276751|gb|EGJ22066.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides WS8N] Length = 68 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFI PEG DVF+H +A+ AG+ L +GQ VT+D ++ Sbjct: 1 MAKGTVKWFNATKGYGFIAPEG---GKKDVFVHITALERAGIRALNDGQAVTFDI-ESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N+ + Sbjct: 57 DGRESATNISI 67 >gi|16974809|pdb|1I5F|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability gi|16974810|pdb|1I5F|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability Length = 66 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQEGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|27378265|ref|NP_769794.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27351412|dbj|BAC48419.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 69 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G+DVF+H SAV AGL L EGQ V ++ + Sbjct: 1 MPTGTVKWFNGQKGFGFIQPD---DGGNDVFVHVSAVERAGLSGLAEGQKVNFEAKTDKM 57 Query: 62 NGKYSAENLKL 72 GK SAENL L Sbjct: 58 RGKVSAENLSL 68 >gi|332974564|gb|EGK11484.1| cold shock transcription regulator protein [Kingella kingae ATCC 23330] Length = 67 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFDVT-TGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|253990644|ref|YP_003042000.1| cold shock protein CspE [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782094|emb|CAQ85258.1| cold shock-like protein cspe [Photorhabdus asymbiotica] Length = 79 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + A G Sbjct: 15 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQKVEFEIT-DGAKG 70 Query: 64 KYSAENLKL 72 + + + Sbjct: 71 PSAVNVVAI 79 >gi|70726510|ref|YP_253424.1| major cold shock protein CspA [Staphylococcus haemolyticus JCSC1435] gi|223043278|ref|ZP_03613325.1| conserved domain protein [Staphylococcus capitis SK14] gi|239637089|ref|ZP_04678083.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|289550810|ref|YP_003471714.1| Cold shock protein CspA [Staphylococcus lugdunensis HKU09-01] gi|314933579|ref|ZP_07840944.1| conserved domain protein [Staphylococcus caprae C87] gi|118572258|sp|Q4L6A7|CSPA_STAHJ RecName: Full=Cold shock protein CspA gi|68447234|dbj|BAE04818.1| major cold shock protein CspA [Staphylococcus haemolyticus JCSC1435] gi|222443489|gb|EEE49587.1| conserved domain protein [Staphylococcus capitis SK14] gi|239597439|gb|EEQ79942.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|289180342|gb|ADC87587.1| Cold shock protein CspA [Staphylococcus lugdunensis HKU09-01] gi|313653729|gb|EFS17486.1| conserved domain protein [Staphylococcus caprae C87] gi|330684708|gb|EGG96406.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121] Length = 66 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQSVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|302538788|ref|ZP_07291130.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302447683|gb|EFL19499.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 67 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H SA+ S G L EGQ VT+D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSTGYRELQEGQAVTFDVTQGQK 57 Query: 62 NGKYSAENLKL 72 AEN+ L Sbjct: 58 G--PQAENINL 66 >gi|52079019|ref|YP_077810.1| cold-shock protein [Bacillus licheniformis ATCC 14580] gi|52784391|ref|YP_090220.1| hypothetical protein BLi00578 [Bacillus licheniformis ATCC 14580] gi|319648678|ref|ZP_08002889.1| cold shock-like protein cspLA [Bacillus sp. BT1B_CT2] gi|52002230|gb|AAU22172.1| cold-shock protein [Bacillus licheniformis ATCC 14580] gi|52346893|gb|AAU39527.1| CspC [Bacillus licheniformis ATCC 14580] gi|317389097|gb|EFV69913.1| cold shock-like protein cspLA [Bacillus sp. BT1B_CT2] Length = 67 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E +GDDVF+H SA+ S G +L EGQ VT+D Q Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQG-P 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGAQAANVQK 65 >gi|86157415|ref|YP_464200.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|197121458|ref|YP_002133409.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|220916162|ref|YP_002491466.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|85773926|gb|ABC80763.1| cold-shock DNA-binding protein family [Anaeromyxobacter dehalogenans 2CP-C] gi|196171307|gb|ACG72280.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|219954016|gb|ACL64400.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 67 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +G GDDVF H +A+ + G L EGQ V +D + Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGDDVFCHHTAIQADGFRTLAEGQKVEFDVTRGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--LQAANVRAI 67 >gi|332715811|ref|YP_004443277.1| cold shock protein cspA [Agrobacterium sp. H13-3] gi|325062496|gb|ADY66186.1| cold shock protein cspA [Agrobacterium sp. H13-3] Length = 74 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D +++ Sbjct: 5 IMTTGTVKWFNSTKGFGFIQPD---NGGTDAFVHISAVERAGMRELVEGQKIGFDLERDN 61 Query: 61 ANGKYSAENLK 71 +GK SA NL+ Sbjct: 62 KSGKMSACNLQ 72 >gi|304385436|ref|ZP_07367781.1| cold shock protein CspA [Pediococcus acidilactici DSM 20284] gi|304328643|gb|EFL95864.1| cold shock protein CspA [Pediococcus acidilactici DSM 20284] Length = 69 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ +G++KW+N DKG+GFIT E G DVF+H SA+ S G L EGQ V++D ++D Sbjct: 3 IMEQGTVKWFNADKGFGFITRE----DGSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESD 58 Query: 61 ANGKYSAENLK 71 A N++ Sbjct: 59 RG--PQAVNVE 67 >gi|224476532|ref|YP_002634138.1| putative cold shock protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222421139|emb|CAL27953.1| putative cold shock protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 66 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQAVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|23098034|ref|NP_691500.1| cold shock protein [Oceanobacillus iheyensis HTE831] gi|22776259|dbj|BAC12535.1| cold shock protein [Oceanobacillus iheyensis HTE831] Length = 65 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFI E GDDVF+H SA+ + G L EGQ V ++ V+ + G Sbjct: 2 TGKVKWFNAEKGFGFIERE----DGDDVFVHFSAIQADGFKTLEEGQDVEFEIVEGN-RG 56 Query: 64 KYSAENLKL 72 +A ++L Sbjct: 57 PQAANVVRL 65 >gi|82703364|ref|YP_412930.1| cold-shock DNA-binding domain-containing protein [Nitrosospira multiformis ATCC 25196] gi|82411429|gb|ABB75538.1| cold-shock DNA-binding protein family [Nitrosospira multiformis ATCC 25196] Length = 67 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + +D+F H SA+ +G L EGQ VT++ Q Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMSGFKTLKEGQKVTFEVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|30265215|ref|NP_847592.1| cold shock protein CspC [Bacillus anthracis str. Ames] gi|47778401|ref|YP_022086.2| cold shock protein CspC [Bacillus anthracis str. 'Ames Ancestor'] gi|196039541|ref|ZP_03106846.1| cold shock protein CspC [Bacillus cereus NVH0597-99] gi|218232486|ref|YP_002369965.1| cold shock protein CspC [Bacillus cereus B4264] gi|218900310|ref|YP_002448721.1| cold shock protein CspC [Bacillus cereus G9842] gi|227817950|ref|YP_002817959.1| cold shock protein CspC [Bacillus anthracis str. CDC 684] gi|228911024|ref|ZP_04074832.1| hypothetical protein bthur0013_51650 [Bacillus thuringiensis IBL 200] gi|228917794|ref|ZP_04081333.1| hypothetical protein bthur0012_49970 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228955435|ref|ZP_04117440.1| hypothetical protein bthur0006_47910 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228968291|ref|ZP_04129289.1| hypothetical protein bthur0004_50700 [Bacillus thuringiensis serovar sotto str. T04001] gi|229050851|ref|ZP_04194403.1| hypothetical protein bcere0027_48060 [Bacillus cereus AH676] gi|229063847|ref|ZP_04200151.1| hypothetical protein bcere0026_49080 [Bacillus cereus AH603] gi|229072644|ref|ZP_04205846.1| hypothetical protein bcere0025_48050 [Bacillus cereus F65185] gi|229112598|ref|ZP_04242135.1| hypothetical protein bcere0018_48380 [Bacillus cereus Rock1-15] gi|229158754|ref|ZP_04286812.1| hypothetical protein bcere0010_49270 [Bacillus cereus ATCC 4342] gi|229169899|ref|ZP_04297595.1| hypothetical protein bcere0007_48390 [Bacillus cereus AH621] gi|229181451|ref|ZP_04308779.1| hypothetical protein bcere0005_47920 [Bacillus cereus 172560W] gi|254724384|ref|ZP_05186168.1| cold shock protein CspC [Bacillus anthracis str. A1055] gi|254735591|ref|ZP_05193298.1| cold shock protein CspC [Bacillus anthracis str. Western North America USA6153] gi|49040749|sp|P62169|CSPC_BACAN RecName: Full=Cold shock-like protein CspC gi|49061093|sp|P62170|CSPC_BACCE RecName: Full=Cold shock-like protein CspC gi|49061097|sp|P62171|CSPC_BACCR RecName: Full=Cold shock-like protein CspC gi|1405474|emb|CAA63609.1| CspC protein [Bacillus cereus] gi|30259892|gb|AAP29078.1| cold shock protein CspC [Bacillus anthracis str. Ames] gi|47552106|gb|AAT34561.2| cold shock protein CspC [Bacillus anthracis str. 'Ames Ancestor'] gi|196029701|gb|EDX68303.1| cold shock protein CspC [Bacillus cereus NVH0597-99] gi|218160443|gb|ACK60435.1| cold shock protein CspC [Bacillus cereus B4264] gi|218544035|gb|ACK96429.1| cold shock protein CspC [Bacillus cereus G9842] gi|227003474|gb|ACP13217.1| cold shock protein CspC [Bacillus anthracis str. CDC 684] gi|228602026|gb|EEK59519.1| hypothetical protein bcere0005_47920 [Bacillus cereus 172560W] gi|228613613|gb|EEK70742.1| hypothetical protein bcere0007_48390 [Bacillus cereus AH621] gi|228624738|gb|EEK81507.1| hypothetical protein bcere0010_49270 [Bacillus cereus ATCC 4342] gi|228670978|gb|EEL26285.1| hypothetical protein bcere0018_48380 [Bacillus cereus Rock1-15] gi|228710620|gb|EEL62593.1| hypothetical protein bcere0025_48050 [Bacillus cereus F65185] gi|228716484|gb|EEL68188.1| hypothetical protein bcere0026_49080 [Bacillus cereus AH603] gi|228722507|gb|EEL73900.1| hypothetical protein bcere0027_48060 [Bacillus cereus AH676] gi|228791464|gb|EEM39068.1| hypothetical protein bthur0004_50700 [Bacillus thuringiensis serovar sotto str. T04001] gi|228804227|gb|EEM50841.1| hypothetical protein bthur0006_47910 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228841843|gb|EEM86951.1| hypothetical protein bthur0012_49970 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228848679|gb|EEM93525.1| hypothetical protein bthur0013_51650 [Bacillus thuringiensis IBL 200] Length = 65 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + A G Sbjct: 2 QGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|325168917|ref|YP_004280707.1| cold-shock DNA-binding domain protein [Agrobacterium sp. H13-3] gi|325064640|gb|ADY68329.1| cold-shock DNA-binding domain protein [Agrobacterium sp. H13-3] Length = 69 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + ++ +++ Sbjct: 1 MTTGTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFELERDNK 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKMSATNLQ 67 >gi|256831549|ref|YP_003160276.1| cold-shock DNA-binding domain-containing protein [Jonesia denitrificans DSM 20603] gi|256685080|gb|ACV07973.1| cold-shock DNA-binding domain protein [Jonesia denitrificans DSM 20603] Length = 67 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI PE + DVF H SA+ + G L E Q V +D Q Sbjct: 1 MAFGTVKWFNAEKGFGFIAPE---DGSADVFAHYSAIQTNGYRTLEENQRVEFDVAQGPK 57 Query: 62 NGKYSAENLK 71 AEN++ Sbjct: 58 G--LQAENIR 65 >gi|296115123|ref|ZP_06833764.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769] gi|295978224|gb|EFG84961.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769] Length = 67 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ + G DVF+H +AV +AGL L E Q V+YD Sbjct: 1 MATGKVKWFNATKGFGFIMPD---DGGKDVFVHITAVQAAGLRGLDENQAVSYDITME-- 55 Query: 62 NGKYSAENLKLV 73 GK +A NLK + Sbjct: 56 RGKAAASNLKPL 67 >gi|237732132|ref|ZP_04562613.1| stationary phase/starvation inducible regulatory protein CspD [Citrobacter sp. 30_2] gi|283832491|ref|ZP_06352232.1| cold shock domain protein CspD [Citrobacter youngae ATCC 29220] gi|226907671|gb|EEH93589.1| stationary phase/starvation inducible regulatory protein CspD [Citrobacter sp. 30_2] gi|291072151|gb|EFE10260.1| cold shock domain protein CspD [Citrobacter youngae ATCC 29220] Length = 74 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQG-P 56 Query: 62 NGKYSAENLKLVPKSS 77 G +++ + ++ + Sbjct: 57 KGNHASVIVPVIEAEA 72 >gi|92118857|ref|YP_578586.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91801751|gb|ABE64126.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 66 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P G G DVF+H SAV AGL L EGQ V ++ V N Sbjct: 1 MAKGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLSTLNEGQTVEFEEVAN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKV 66 >gi|154245503|ref|YP_001416461.1| cold-shock DNA-binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154159588|gb|ABS66804.1| putative cold-shock DNA-binding domain protein [Xanthobacter autotrophicus Py2] Length = 70 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G D F+H SAV AG+ +L EGQ V ++ V + Sbjct: 1 MAEGTVKWFNAQKGFGFITPDS---GGSDAFVHISAVERAGMSDLREGQKVAFELVTDRK 57 Query: 62 NGKYSAENLK 71 +GK SA+ LK Sbjct: 58 SGKLSADQLK 67 >gi|313671995|ref|YP_004050106.1| cold-shock DNA-binding domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312938751|gb|ADR17943.1| cold-shock DNA-binding domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 67 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M + G++KW+N KGYGFIT + +G+DVF+H SA+ G +L EG V +D V+ Sbjct: 1 MSNTGTVKWFNDTKGYGFIT----SSTGEDVFVHYSAITMDGFKSLKEGDKVNFDIVKG- 55 Query: 61 ANGKYSAENLK 71 G +A K Sbjct: 56 PKGPQAANVTK 66 >gi|197106095|ref|YP_002131472.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] gi|196479515|gb|ACG79043.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] Length = 69 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G+DVF+H SAV AG+ NL+EGQ V+++ ++ Sbjct: 1 MTIGTVKWFNGQKGFGFIQPD---DGGNDVFVHISAVERAGMSNLSEGQKVSFELQKDSR 57 Query: 62 NGKYSAENLK 71 +GK SAE L+ Sbjct: 58 SGKMSAEQLQ 67 >gi|167647171|ref|YP_001684834.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp. K31] gi|167349601|gb|ABZ72336.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31] Length = 67 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ + G DVF+H SAV AGL L EGQ V++D + Sbjct: 1 MATGVVKWFNGTKGFGFIQPD---DGGKDVFVHISAVERAGLRGLDEGQKVSFDTAEE-- 55 Query: 62 NGKYSAENLKLV 73 GK +A NLK + Sbjct: 56 RGKIAANNLKPL 67 >gi|284990904|ref|YP_003409458.1| cold-shock DNA-binding domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284064149|gb|ADB75087.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus DSM 43160] Length = 67 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI +G G DVF H SA++ +G +L E Q V +D Q Sbjct: 1 MTQGTVKWFNAEKGFGFIEQDG---GGPDVFCHFSAISGSGYRSLDEAQRVEFDVTQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENVRAI 67 >gi|154253600|ref|YP_001414424.1| cold-shock DNA-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154157550|gb|ABS64767.1| putative cold-shock DNA-binding domain protein [Parvibaculum lavamentivorans DS-1] Length = 69 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G DVF+H SAV AG+ +L EGQ + YD + Sbjct: 1 MANGTVKWFNSQKGFGFIQPDGGD---KDVFVHISAVERAGMSSLNEGQKIGYDLETDQR 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKVSAANLR 67 >gi|110678559|ref|YP_681566.1| cold shock protein CspA [Roseobacter denitrificans OCh 114] gi|109454675|gb|ABG30880.1| cold shock protein CspA [Roseobacter denitrificans OCh 114] Length = 68 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G DVF+H SAV AGL L + Q VT+D ++ Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLADNQKVTFDI-EDGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRQSATNLAL 67 >gi|85860247|ref|YP_462449.1| cold shock protein [Syntrophus aciditrophicus SB] gi|85723338|gb|ABC78281.1| cold shock protein [Syntrophus aciditrophicus SB] Length = 67 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G++KW+N KG+GFI + SG+DVF+H SA+ G L E + V++D VQ Sbjct: 1 MMPEGTVKWFNDSKGFGFIAQD----SGNDVFVHYSAIQGTGFKTLAESERVSFDVVQGA 56 Query: 61 ANGKYSAENLKLV 73 SAEN++ + Sbjct: 57 KG--PSAENVRKL 67 >gi|325962509|ref|YP_004240415.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] gi|323468596|gb|ADX72281.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] Length = 67 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI+P+ +S DVF H SA+ S G +L E Q V++D Q Sbjct: 1 MATGTVKWFNAEKGFGFISPD---DSSQDVFAHYSAINSNGFRSLEENQKVSFDTEQGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--PQATNIQAL 67 >gi|319936790|ref|ZP_08011202.1| cold-shock DNA-binding domain-containing protein [Coprobacillus sp. 29_1] gi|319808058|gb|EFW04630.1| cold-shock DNA-binding domain-containing protein [Coprobacillus sp. 29_1] Length = 66 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFIT + G D+F+H SA+A +G L EGQ V+++ + D Sbjct: 1 MNTGKVKWFNSEKGFGFITVD----GGKDIFVHFSAIAGSGYKTLEEGQNVSFEITEGDR 56 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 57 G--PQASNVTVL 66 >gi|269792592|ref|YP_003317496.1| cold-shock DNA-binding domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100227|gb|ACZ19214.1| cold-shock DNA-binding domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 83 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KGYGFIT E G DVF+H SA+ G L EGQ V+++ V+ + G Sbjct: 20 NGVVKWFNATKGYGFIT----AEDGKDVFVHFSAIQQEGFKTLEEGQRVSFEVVEG-SKG 74 Query: 64 KYSAENLKL 72 +A KL Sbjct: 75 PQAANVEKL 83 >gi|206561070|ref|YP_002231835.1| cold shock-like protein [Burkholderia cenocepacia J2315] gi|198037112|emb|CAR53033.1| cold shock-like protein [Burkholderia cenocepacia J2315] Length = 67 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D VQ Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAITMNGFKTLKEGQKVSFDVVQGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 58 G--KQASNIQAV 67 >gi|229544252|ref|ZP_04433311.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] gi|229325391|gb|EEN91067.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] Length = 67 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI E GDDVF+H SA+ G L EGQ V++D V+ + Sbjct: 1 MEHGTVKWFNSEKGYGFIERE----GGDDVFVHFSAIQGEGYKTLEEGQKVSFD-VEEGS 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|92117563|ref|YP_577292.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91800457|gb|ABE62832.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 67 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G DVF+H SAV AGL +L EG V+Y+ V N Sbjct: 1 MATGTVKWFNATKGFGFIQPDS---GGKDVFVHISAVERAGLSSLNEGAKVSYEEVAN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENL++ Sbjct: 56 KGKTSAENLRV 66 >gi|83944376|ref|ZP_00956831.1| cold shock family protein [Sulfitobacter sp. EE-36] gi|83953418|ref|ZP_00962140.1| cold shock family protein [Sulfitobacter sp. NAS-14.1] gi|83842386|gb|EAP81554.1| cold shock family protein [Sulfitobacter sp. NAS-14.1] gi|83844920|gb|EAP82802.1| cold shock family protein [Sulfitobacter sp. EE-36] Length = 68 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+G G D+F+H SAV AGL L + Q VT+D V+ Sbjct: 1 MATGTVKWFNTTKGYGFIAPDG---GGKDIFVHISAVERAGLTGLADNQKVTFD-VEAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N+ L Sbjct: 57 DGRESAANIAL 67 >gi|149928086|ref|ZP_01916333.1| Cold-shock DNA-binding domain protein [Limnobacter sp. MED105] gi|149823172|gb|EDM82409.1| Cold-shock DNA-binding domain protein [Limnobacter sp. MED105] Length = 73 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 5/76 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + D++F H SA+ ++G L EGQ VT++ V + Sbjct: 1 MATGTVKWFNDAKGFGFITPD---QGSDELFAHFSAIQASGFRTLKEGQKVTFEVV-DGP 56 Query: 62 NGKYSAENLKLVPKSS 77 GK A+N+ ++ +S Sbjct: 57 KGKQ-AQNISVMDATS 71 >gi|89101277|ref|ZP_01174096.1| cold-shock protein [Bacillus sp. NRRL B-14911] gi|89084011|gb|EAR63193.1| cold-shock protein [Bacillus sp. NRRL B-14911] Length = 66 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E GDDVF+H +A+ G +L EGQ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIQGDGFKSLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|37526673|ref|NP_930017.1| cold shock protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786105|emb|CAE15157.1| cold shock protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 69 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP + DVF+H SA+ S G L EGQ V ++ Q+ G Sbjct: 5 TGTVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSEGFKTLAEGQKVEFEI-QDGQKG 60 Query: 64 KYSAEN 69 +A Sbjct: 61 PSAANV 66 >gi|110635634|ref|YP_675842.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp. BNC1] gi|110286618|gb|ABG64677.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1] Length = 69 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 49/70 (70%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI P+ + DVF+H SAV AG+ + EGQ +++D V+++ Sbjct: 1 MTIGTVKFFNATKGFGFIQPD---DGAADVFVHISAVERAGMRTIVEGQKLSFDVVRDNR 57 Query: 62 NGKYSAENLK 71 +GK +AENL+ Sbjct: 58 SGKSAAENLQ 67 >gi|15923806|ref|NP_371340.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu50] gi|15926469|ref|NP_374002.1| cold-shock protein C [Staphylococcus aureus subsp. aureus N315] gi|21282499|ref|NP_645587.1| cold-shock protein C [Staphylococcus aureus subsp. aureus MW2] gi|49483048|ref|YP_040272.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49485662|ref|YP_042883.1| putative cold shock protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57650136|ref|YP_185734.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus COL] gi|82750501|ref|YP_416242.1| cold-shock protein C [Staphylococcus aureus RF122] gi|87161313|ref|YP_493477.1| cold shock protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194578|ref|YP_499374.1| hypothetical protein SAOUHSC_00819 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267252|ref|YP_001246195.1| cold-shock DNA-binding domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150393301|ref|YP_001315976.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus JH1] gi|151220973|ref|YP_001331795.1| cold-shock protein CSD family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156979143|ref|YP_001441402.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu3] gi|161509065|ref|YP_001574724.1| cold-shock protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141194|ref|ZP_03565687.1| cold-shock protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316731|ref|ZP_04839944.1| cold shock protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731424|ref|ZP_04865589.1| cold-shock protein C [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732760|ref|ZP_04866925.1| cold-shock protein C [Staphylococcus aureus subsp. aureus TCH130] gi|255005605|ref|ZP_05144206.2| cold shock protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424912|ref|ZP_05601339.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 55/2053] gi|257427580|ref|ZP_05603979.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 65-1322] gi|257430213|ref|ZP_05606596.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 68-397] gi|257432912|ref|ZP_05609272.1| cold-shock protein C [Staphylococcus aureus subsp. aureus E1410] gi|257435816|ref|ZP_05611864.1| cold-shock protein C [Staphylococcus aureus subsp. aureus M876] gi|257794886|ref|ZP_05643865.1| cold shock protein [Staphylococcus aureus A9781] gi|258418202|ref|ZP_05682467.1| cold shock protein [Staphylococcus aureus A9763] gi|258421499|ref|ZP_05684424.1| cold-shock protein [Staphylococcus aureus A9719] gi|258423441|ref|ZP_05686332.1| cold shock protein [Staphylococcus aureus A9635] gi|258439159|ref|ZP_05690203.1| cold-shock protein C [Staphylococcus aureus A9299] gi|258440913|ref|ZP_05690748.1| cold-shock protein DNA-binding [Staphylococcus aureus A8115] gi|258445743|ref|ZP_05693920.1| cold-shock protein C [Staphylococcus aureus A6300] gi|258449556|ref|ZP_05697658.1| cold-shock protein CSD family protein [Staphylococcus aureus A6224] gi|258452159|ref|ZP_05700175.1| cold-shock protein CSD family protein [Staphylococcus aureus A5948] gi|258453956|ref|ZP_05701928.1| cold-shock protein C [Staphylococcus aureus A5937] gi|262050053|ref|ZP_06022910.1| cold-shock protein C [Staphylococcus aureus D30] gi|262053165|ref|ZP_06025326.1| cold-shock protein C [Staphylococcus aureus 930918-3] gi|269202417|ref|YP_003281686.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus ED98] gi|282894625|ref|ZP_06302852.1| cold shock protein cspC [Staphylococcus aureus A8117] gi|282903424|ref|ZP_06311315.1| conserved domain protein [Staphylococcus aureus subsp. aureus C160] gi|282905203|ref|ZP_06313060.1| cold shock protein beta-ribbon CspA family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908183|ref|ZP_06316014.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910439|ref|ZP_06318243.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WBG10049] gi|282913636|ref|ZP_06321425.1| conserved domain protein [Staphylococcus aureus subsp. aureus M899] gi|282916136|ref|ZP_06323899.1| cold shock protein [Staphylococcus aureus subsp. aureus D139] gi|282918587|ref|ZP_06326324.1| cold shock protein [Staphylococcus aureus subsp. aureus C427] gi|282923553|ref|ZP_06331233.1| cold shock-like protein cspC [Staphylococcus aureus subsp. aureus C101] gi|282926148|ref|ZP_06333783.1| cold shock-like protein cspC [Staphylococcus aureus A9765] gi|282926662|ref|ZP_06334292.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A10102] gi|283769955|ref|ZP_06342847.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus H19] gi|283957625|ref|ZP_06375078.1| conserved domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284023816|ref|ZP_06378214.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus 132] gi|293500678|ref|ZP_06666529.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509628|ref|ZP_06668339.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus M809] gi|293524214|ref|ZP_06670901.1| conserved domain protein [Staphylococcus aureus subsp. aureus M1015] gi|294850139|ref|ZP_06790875.1| cold shock protein [Staphylococcus aureus A9754] gi|295406518|ref|ZP_06816324.1| cold shock-like protein cspC [Staphylococcus aureus A8819] gi|295427371|ref|ZP_06820006.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297208480|ref|ZP_06924909.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245243|ref|ZP_06929117.1| cold shock-like protein cspC [Staphylococcus aureus A8796] gi|297590271|ref|ZP_06948910.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8] gi|300912553|ref|ZP_07129996.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus TCH70] gi|304381582|ref|ZP_07364232.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|2226349|gb|AAB61744.1| CspC [Staphylococcus aureus RN4220] gi|13700683|dbj|BAB41980.1| cold-shock protein C [Staphylococcus aureus subsp. aureus N315] gi|14246585|dbj|BAB56978.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu50] gi|21203936|dbj|BAB94635.1| cold-shock protein C [Staphylococcus aureus subsp. aureus MW2] gi|49241177|emb|CAG39856.1| putative cold shock protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244105|emb|CAG42531.1| putative cold shock protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57284322|gb|AAW36416.1| cold shock protein, CSD family [Staphylococcus aureus subsp. aureus COL] gi|82656032|emb|CAI80437.1| cold-shock protein C [Staphylococcus aureus RF122] gi|87127287|gb|ABD21801.1| cold shock protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202136|gb|ABD29946.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740321|gb|ABQ48619.1| cold-shock DNA-binding protein family [Staphylococcus aureus subsp. aureus JH9] gi|149945753|gb|ABR51689.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus JH1] gi|150373773|dbj|BAF67033.1| cold-shock protein CSD family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721278|dbj|BAF77695.1| cold-shock protein C [Staphylococcus aureus subsp. aureus Mu3] gi|160367874|gb|ABX28845.1| cold-shock protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724824|gb|EES93553.1| cold-shock protein C [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729280|gb|EES98009.1| cold-shock protein C [Staphylococcus aureus subsp. aureus TCH130] gi|257272482|gb|EEV04605.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 55/2053] gi|257275773|gb|EEV07246.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 65-1322] gi|257278990|gb|EEV09601.1| cold-shock protein C [Staphylococcus aureus subsp. aureus 68-397] gi|257282327|gb|EEV12462.1| cold-shock protein C [Staphylococcus aureus subsp. aureus E1410] gi|257285007|gb|EEV15126.1| cold-shock protein C [Staphylococcus aureus subsp. aureus M876] gi|257788858|gb|EEV27198.1| cold shock protein [Staphylococcus aureus A9781] gi|257838995|gb|EEV63474.1| cold shock protein [Staphylococcus aureus A9763] gi|257842425|gb|EEV66849.1| cold-shock protein [Staphylococcus aureus A9719] gi|257846502|gb|EEV70525.1| cold shock protein [Staphylococcus aureus A9635] gi|257847731|gb|EEV71728.1| cold-shock protein C [Staphylococcus aureus A9299] gi|257852427|gb|EEV76348.1| cold-shock protein DNA-binding [Staphylococcus aureus A8115] gi|257855319|gb|EEV78257.1| cold-shock protein C [Staphylococcus aureus A6300] gi|257857064|gb|EEV79963.1| cold-shock protein CSD family protein [Staphylococcus aureus A6224] gi|257860374|gb|EEV83206.1| cold-shock protein CSD family protein [Staphylococcus aureus A5948] gi|257863821|gb|EEV86577.1| cold-shock protein C [Staphylococcus aureus A5937] gi|259158935|gb|EEW44018.1| cold-shock protein C [Staphylococcus aureus 930918-3] gi|259161849|gb|EEW46434.1| cold-shock protein C [Staphylococcus aureus D30] gi|262074707|gb|ACY10680.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus ED98] gi|269940369|emb|CBI48746.1| putative cold shock protein [Staphylococcus aureus subsp. aureus TW20] gi|282314421|gb|EFB44811.1| cold shock-like protein cspC [Staphylococcus aureus subsp. aureus C101] gi|282317721|gb|EFB48093.1| cold shock protein [Staphylococcus aureus subsp. aureus C427] gi|282320084|gb|EFB50431.1| cold shock protein [Staphylococcus aureus subsp. aureus D139] gi|282322668|gb|EFB52990.1| conserved domain protein [Staphylococcus aureus subsp. aureus M899] gi|282325831|gb|EFB56139.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WBG10049] gi|282327848|gb|EFB58130.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331610|gb|EFB61122.1| cold shock protein beta-ribbon CspA family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282591555|gb|EFB96627.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A10102] gi|282592289|gb|EFB97306.1| cold shock-like protein cspC [Staphylococcus aureus A9765] gi|282596379|gb|EFC01340.1| conserved domain protein [Staphylococcus aureus subsp. aureus C160] gi|282762902|gb|EFC03035.1| cold shock protein cspC [Staphylococcus aureus A8117] gi|283460102|gb|EFC07192.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus H19] gi|283470089|emb|CAQ49300.1| conserved domain protein [Staphylococcus aureus subsp. aureus ST398] gi|283791076|gb|EFC29891.1| conserved domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|285816495|gb|ADC36982.1| Cold shock protein CspC [Staphylococcus aureus 04-02981] gi|290921177|gb|EFD98238.1| conserved domain protein [Staphylococcus aureus subsp. aureus M1015] gi|291095683|gb|EFE25944.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467725|gb|EFF10240.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus M809] gi|294822913|gb|EFG39346.1| cold shock protein [Staphylococcus aureus A9754] gi|294968663|gb|EFG44686.1| cold shock-like protein cspC [Staphylococcus aureus A8819] gi|295128759|gb|EFG58390.1| cold shock protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886735|gb|EFH25639.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177914|gb|EFH37163.1| cold shock-like protein cspC [Staphylococcus aureus A8796] gi|297576570|gb|EFH95285.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus MN8] gi|298694126|gb|ADI97348.1| cold-shock protein C [Staphylococcus aureus subsp. aureus ED133] gi|300886799|gb|EFK82001.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus TCH70] gi|302332502|gb|ADL22695.1| cold-shock DNA-binding domain protein, CspC [Staphylococcus aureus subsp. aureus JKD6159] gi|302750688|gb|ADL64865.1| cold-shock DNA-binding domain protein, CspC [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339945|gb|EFM05889.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438777|gb|ADQ77848.1| cold shock protein CspA [Staphylococcus aureus subsp. aureus TCH60] gi|315128997|gb|EFT84994.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS03] gi|315194411|gb|EFU24803.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS00] gi|315196274|gb|EFU26628.1| cold-shock protein [Staphylococcus aureus subsp. aureus CGS01] gi|320140093|gb|EFW31953.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus MRSA131] gi|320141733|gb|EFW33562.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus MRSA177] gi|323438537|gb|EGA96285.1| cold-shock protein C [Staphylococcus aureus O11] gi|323441972|gb|EGA99609.1| cold-shock protein C [Staphylococcus aureus O46] gi|329313533|gb|AEB87946.1| Cold-shock DNA-binding protein family [Staphylococcus aureus subsp. aureus T0131] gi|329724582|gb|EGG61089.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 21172] gi|329726262|gb|EGG62732.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 21189] gi|329733929|gb|EGG70251.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 21193] Length = 66 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E G DVF+H SA+A G +L EGQ V +D V+ D Sbjct: 1 MNNGTVKWFNAEKGFGFIERE----DGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGD- 55 Query: 62 NGKYSAENLKL 72 G+ +A +K+ Sbjct: 56 RGEQAANVVKM 66 >gi|238753480|ref|ZP_04614843.1| Cold shock-like protein cspD [Yersinia ruckeri ATCC 29473] gi|238708433|gb|EEQ00788.1| Cold shock-like protein cspD [Yersinia ruckeri ATCC 29473] Length = 73 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G+D+F H S + G L GQ V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPE---NGGEDIFAHYSTIQMDGYRTLKAGQQVNFDIHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|238784506|ref|ZP_04628514.1| Cold shock-like protein cspD [Yersinia bercovieri ATCC 43970] gi|238714569|gb|EEQ06573.1| Cold shock-like protein cspD [Yersinia bercovieri ATCC 43970] Length = 85 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|116669616|ref|YP_830549.1| cold-shock DNA-binding protein family protein [Arthrobacter sp. FB24] gi|116609725|gb|ABK02449.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24] Length = 67 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI+P+ +S DVF H SA+ S+G +L E Q V+++ Q Sbjct: 1 MATGTVKWFNAEKGFGFISPD---DSSQDVFAHYSAINSSGFRSLEENQKVSFETEQGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--PQATNIQAI 67 >gi|237748947|ref|ZP_04579427.1| cold shock transcription regulator [Oxalobacter formigenes OXCC13] gi|229380309|gb|EEO30400.1| cold shock transcription regulator [Oxalobacter formigenes OXCC13] Length = 67 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E G+DVF H SA+ S G +L E Q V+++ Sbjct: 1 MATGTVKWFNDSKGFGFITPD---EGGEDVFAHFSAIKSDGFKSLKENQRVSFEVT-TGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|308234392|ref|ZP_07665129.1| cold-shock DNA-binding protein family [Atopobium vaginae DSM 15829] gi|328944208|ref|ZP_08241672.1| cold shock protein B [Atopobium vaginae DSM 15829] gi|327491127|gb|EGF22902.1| cold shock protein B [Atopobium vaginae DSM 15829] Length = 67 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NPDKGYGFI+ E GDD+F+H S + G L EGQ V +D Sbjct: 1 MAQGTVKWFNPDKGYGFISRE----DGDDLFVHFSEIKMDGFKTLDEGQAVEFDIT-TGQ 55 Query: 62 NGKYSAENLK 71 NGK A N++ Sbjct: 56 NGKLQASNVR 65 >gi|85703999|ref|ZP_01035102.1| cold shock family protein [Roseovarius sp. 217] gi|85671319|gb|EAQ26177.1| cold shock family protein [Roseovarius sp. 217] Length = 68 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KWYN KG+GFI P+ G DVF+H SA+ AGL L + Q VT+D ++ Sbjct: 1 MANGTVKWYNSTKGFGFIAPD---NGGKDVFVHVSAIERAGLTGLADNQKVTFDI-ESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL+L Sbjct: 57 DGRESASNLQL 67 >gi|149179855|ref|ZP_01858360.1| cold shock protein [Bacillus sp. SG-1] gi|148852047|gb|EDL66192.1| cold shock protein [Bacillus sp. SG-1] Length = 66 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ + Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAITGEGFKSLDEGQRVEFEVVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|332670111|ref|YP_004453119.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339149|gb|AEE45732.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484] Length = 67 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI +G G DVF+H SA+ + G +L EGQ V ++ Q D Sbjct: 1 MAQGAVKWFNAEKGYGFIAQDG---GGADVFVHYSAIDTQGYRSLDEGQRVEFEITQGDK 57 Query: 62 NGKYSAENLKLV 73 AE+++ + Sbjct: 58 G--PQAEHVRPL 67 >gi|158317202|ref|YP_001509710.1| cold-shock DNA-binding domain-containing protein [Frankia sp. EAN1pec] gi|158112607|gb|ABW14804.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec] Length = 94 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+N +KG+GFI+ +G G DVF H S++ G +L EGQ V++D Q Sbjct: 27 VSEGTVKWFNAEKGFGFISVDG---GGPDVFAHFSSIVGDGYKSLEEGQRVSFDIEQGQ- 82 Query: 62 NGKYSAEN 69 G +A+ Sbjct: 83 KGPQAAKV 90 >gi|260425469|ref|ZP_05779449.1| conserved domain protein [Citreicella sp. SE45] gi|260423409|gb|EEX16659.1| conserved domain protein [Citreicella sp. SE45] Length = 68 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE DVF+H SA+ +GL L +GQ VT+D V++ Sbjct: 1 MATGTVKWFNTTKGFGFIEPE---NGSRDVFVHISALQRSGLDRLEDGQKVTFD-VESGR 56 Query: 62 NGKYSAENLKL 72 +G+ +A NL L Sbjct: 57 DGRENANNLAL 67 >gi|319892401|ref|YP_004149276.1| Cold shock protein CspA [Staphylococcus pseudintermedius HKU10-03] gi|317162097|gb|ADV05640.1| Cold shock protein CspA [Staphylococcus pseudintermedius HKU10-03] gi|323464494|gb|ADX76647.1| cold shock protein [Staphylococcus pseudintermedius ED99] Length = 66 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLDEGQSVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|123441828|ref|YP_001005812.1| cold shock-like protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088789|emb|CAL11595.1| cold shock-like protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 85 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|170723167|ref|YP_001750855.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida W619] gi|169761170|gb|ACA74486.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619] Length = 197 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D Sbjct: 128 MRDTGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRD 183 Query: 61 ANGKYSAENLKLV 73 AE++ V Sbjct: 184 KG--LQAEDVVAV 194 >gi|118445055|ref|YP_879083.1| cold shock protein cspB [Clostridium novyi NT] gi|118135511|gb|ABK62555.1| cold shock protein cspB [Clostridium novyi NT] Length = 66 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI+ EG DDVF+H SA+ G L EGQ V ++ + A Sbjct: 1 MKTGIVKWFNAEKGFGFISVEGE----DDVFVHFSAIQGEGFKTLEEGQKVEFEVTEG-A 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|70729479|ref|YP_259217.1| cold shock protein capa, fragment-like protein [Pseudomonas fluorescens Pf-5] gi|312961945|ref|ZP_07776442.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] gi|68343778|gb|AAY91384.1| cold shock protein capa [Pseudomonas fluorescens Pf-5] gi|311283755|gb|EFQ62339.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] Length = 91 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ + Sbjct: 25 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAEKGQ 80 Query: 62 NGKYSAEN 69 G +A+ Sbjct: 81 KGMQAAQV 88 >gi|295094368|emb|CBK83459.1| cold-shock DNA-binding protein family [Coprococcus sp. ART55/1] Length = 71 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI+ + E+G DVF+H SA+ S G L EGQ VT+D + Sbjct: 1 MKNGTVKWFNGEKGYGFISDD---ETGKDVFVHFSAINSDGYKTLNEGQKVTFDVEADPK 57 Query: 62 NG-KYSAENLKLV 73 + K A N+ +V Sbjct: 58 DASKERATNVTVV 70 >gi|307546021|ref|YP_003898500.1| cold shock protein CspA [Halomonas elongata DSM 2581] gi|307218045|emb|CBV43315.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas elongata DSM 2581] Length = 68 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI+PE + GDD+F+H S + + G +L +GQ V+++ Q Sbjct: 1 MATGTVKWFNDTKGYGFISPE---DGGDDLFVHFSEIQAEGFKSLQDGQKVSFEVTQGKK 57 Query: 62 NGKYSAENLKL 72 A N+++ Sbjct: 58 G--LQASNVRV 66 >gi|349561|gb|AAB66357.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 70 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H SA+ + G +L EGQ V++ ++ A G Sbjct: 6 TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 61 Query: 64 KYSAENLKL 72 +A L Sbjct: 62 PAAANVTSL 70 >gi|254382460|ref|ZP_04997819.1| cold shock protein [Streptomyces sp. Mg1] gi|194341364|gb|EDX22330.1| cold shock protein [Streptomyces sp. Mg1] Length = 67 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E QLV +D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQLVNFDVTQGPK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENVT 65 >gi|157369432|ref|YP_001477421.1| cold shock protein CspE [Serratia proteamaculans 568] gi|157321196|gb|ABV40293.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] Length = 69 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ Q A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFEITQG-AKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|148257897|ref|YP_001242482.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp. BTAi1] gi|146410070|gb|ABQ38576.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1] Length = 66 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P G D+F+H SAV AGL L EGQ + Y+ + N Sbjct: 1 MAKGTVKWFNPTKGYGFIQP---AAGGKDIFVHISAVQKAGLTTLNEGQTIEYEEIAN-- 55 Query: 62 NGKYSAENLKL 72 G+ SAENLK+ Sbjct: 56 RGRSSAENLKV 66 >gi|226939300|ref|YP_002794371.1| cspD2 [Laribacter hongkongensis HLHK9] gi|226714224|gb|ACO73362.1| cspD2 [Laribacter hongkongensis HLHK9] Length = 68 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H SA+ G L EGQ V +D Q Sbjct: 1 MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSAINMNGFKTLKEGQRVNFDVNQG-P 56 Query: 62 NGKYSAE 68 GK ++ Sbjct: 57 KGKQASN 63 >gi|163739594|ref|ZP_02147003.1| cold shock protein CspA-related protein, putative [Phaeobacter gallaeciensis BS107] gi|161387053|gb|EDQ11413.1| cold shock protein CspA-related protein, putative [Phaeobacter gallaeciensis BS107] Length = 68 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG DVF+H SA+ AGL L + Q VT+D + Sbjct: 1 MANGTVKWFNSTKGFGFIAPEG---GSRDVFVHISALERAGLTTLNDDQKVTFDI-EAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESAANLAL 67 >gi|21222890|ref|NP_628669.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|256785998|ref|ZP_05524429.1| cold shock protein [Streptomyces lividans TK24] gi|289769893|ref|ZP_06529271.1| cold shock protein [Streptomyces lividans TK24] gi|7242722|emb|CAB77296.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|289700092|gb|EFD67521.1| cold shock protein [Streptomyces lividans TK24] Length = 67 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q V++D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQEG---GGPDVFVHYSAINAQGFRSLEENQQVSFDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN+ V Sbjct: 58 G--PQAENVTPV 67 >gi|257869655|ref|ZP_05649308.1| cold-shock protein [Enterococcus gallinarum EG2] gi|257803819|gb|EEV32641.1| cold-shock protein [Enterococcus gallinarum EG2] Length = 66 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFIT + GDDVF+H SA+ G +L EGQ V + V+ A Sbjct: 1 MEHGKVKWFNNEKGFGFITVD----GGDDVFVHFSAIQGDGFKSLEEGQEVEFSIVEG-A 55 Query: 62 NGKYSAENLKL 72 G +AE K+ Sbjct: 56 RGPQAAEVTKI 66 >gi|85860950|ref|YP_463154.1| cold shock protein [Syntrophus aciditrophicus SB] gi|85724041|gb|ABC78984.1| cold shock protein [Syntrophus aciditrophicus SB] Length = 132 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + +G+DVF+H SA+ G L EG V +D V+ + Sbjct: 67 MSEGTVKWFNASKGFGFIAQD----NGNDVFVHFSAIKMEGYKALEEGARVRFDVVKGNK 122 Query: 62 NGKYSAENLKLV 73 +A+N++L+ Sbjct: 123 G--PAADNVELL 132 >gi|242238529|ref|YP_002986710.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] gi|242130586|gb|ACS84888.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] Length = 69 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ N A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSTGFKTLAEGQRVEFEIT-NGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|261404404|ref|YP_003240645.1| cold-shock DNA-binding domain-containing protein [Paenibacillus sp. Y412MC10] gi|315644849|ref|ZP_07897978.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|329929715|ref|ZP_08283401.1| major cold shock protein CspA [Paenibacillus sp. HGF5] gi|261280867|gb|ACX62838.1| cold-shock DNA-binding domain protein [Paenibacillus sp. Y412MC10] gi|315279791|gb|EFU43092.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|328935932|gb|EGG32391.1| major cold shock protein CspA [Paenibacillus sp. HGF5] Length = 66 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ V+ + Sbjct: 1 MQTGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIQGDGFKTLDEGQRVEFNIVEGN- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQAENVVKL 66 >gi|261409631|ref|YP_003245872.1| cold-shock DNA-binding domain-containing protein [Paenibacillus sp. Y412MC10] gi|329928767|ref|ZP_08282616.1| cold shock-like protein CspE [Paenibacillus sp. HGF5] gi|261286094|gb|ACX68065.1| cold-shock DNA-binding domain protein [Paenibacillus sp. Y412MC10] gi|328937548|gb|EGG33966.1| cold shock-like protein CspE [Paenibacillus sp. HGF5] Length = 65 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI TE G DVF+H SA+ S G L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFNAEKGYGFIE----TEDGGDVFVHFSAIQSEGFKTLEEGQSVEFEIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|27468004|ref|NP_764641.1| major cold shock protein CspA [Staphylococcus epidermidis ATCC 12228] gi|73662658|ref|YP_301439.1| cold shock protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|228476062|ref|ZP_04060770.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|282876159|ref|ZP_06285026.1| major cold shock protein CspA [Staphylococcus epidermidis SK135] gi|314936453|ref|ZP_07843800.1| conserved domain protein [Staphylococcus hominis subsp. hominis C80] gi|81842847|sp|Q8CP90|CSPA_STAES RecName: Full=Cold shock protein CspA gi|118572257|sp|Q5HPE0|CSPA_STAEQ RecName: Full=Cold shock protein CspA gi|118572259|sp|Q49XK3|CSPA_STAS1 RecName: Full=Cold shock protein CspA gi|27315549|gb|AAO04683.1|AE016747_180 major cold shock protein CspA [Staphylococcus epidermidis ATCC 12228] gi|72495173|dbj|BAE18494.1| cold shock protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|228269885|gb|EEK11365.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|281295184|gb|EFA87711.1| major cold shock protein CspA [Staphylococcus epidermidis SK135] gi|313655072|gb|EFS18817.1| conserved domain protein [Staphylococcus hominis subsp. hominis C80] gi|319400756|gb|EFV88975.1| cold shock protein cspB [Staphylococcus epidermidis FRI909] gi|329729371|gb|EGG65777.1| major cold shock protein CspA [Staphylococcus epidermidis VCU144] gi|329732908|gb|EGG69253.1| major cold shock protein CspA [Staphylococcus epidermidis VCU028] gi|329735220|gb|EGG71512.1| major cold shock protein CspA [Staphylococcus epidermidis VCU045] Length = 66 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|294811207|ref|ZP_06769850.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|294323806|gb|EFG05449.1| Cold shock protein [Streptomyces clavuligerus ATCC 27064] Length = 92 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 26 MAQGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELREGQRVSFDVTQGQK 82 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 83 G--PQAENI 89 >gi|154685002|ref|YP_001420163.1| hypothetical protein RBAM_005400 [Bacillus amyloliquefaciens FZB42] gi|154350853|gb|ABS72932.1| CspC [Bacillus amyloliquefaciens FZB42] Length = 67 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E +GDDVF+H SA+ S G +L EGQ VT+D Q A Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQG-A 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGAQAANVQK 65 >gi|299821570|ref|ZP_07053458.1| cold shock protein CspA [Listeria grayi DSM 20601] gi|299817235|gb|EFI84471.1| cold shock protein CspA [Listeria grayi DSM 20601] Length = 66 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V+ Sbjct: 1 MQTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIQGDGFKTLDEGQSVEFEIVEGQ- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQAENVVKL 66 >gi|90962451|ref|YP_536367.1| cold shock protein [Lactobacillus salivarius UCC118] gi|227891500|ref|ZP_04009305.1| cold shock protein [Lactobacillus salivarius ATCC 11741] gi|301299206|ref|ZP_07205493.1| cold shock protein CspB [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821645|gb|ABE00284.1| Cold shock protein [Lactobacillus salivarius UCC118] gi|227866647|gb|EEJ74068.1| cold shock protein [Lactobacillus salivarius ATCC 11741] gi|300853166|gb|EFK80763.1| cold shock protein CspB [Lactobacillus salivarius ACS-116-V-Col5a] Length = 66 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFIT E +GDDVF+H +A+ G L EGQ VT+D V++ Sbjct: 1 MEQGTVKWFNAEKGFGFITRE----NGDDVFVHFTAIQGEGYKTLEEGQHVTFD-VESSD 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGLQAANVVK 65 >gi|222147128|ref|YP_002548085.1| cold shock protein [Agrobacterium vitis S4] gi|221734118|gb|ACM35081.1| cold shock protein [Agrobacterium vitis S4] Length = 74 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ + YD +++ Sbjct: 5 IMTTGTVKWFNSTKGFGFIQPD---NGGPDAFVHISAVERAGMREIVEGQKIAYDMERDN 61 Query: 61 ANGKYSAENLK 71 +GK SA NL+ Sbjct: 62 KSGKMSACNLQ 72 >gi|311066997|ref|YP_003971920.1| cold-shock protein [Bacillus atrophaeus 1942] gi|310867514|gb|ADP30989.1| cold-shock protein [Bacillus atrophaeus 1942] Length = 67 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E +GDDVF+H SA+ S G +L EGQ VT+D Q A Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQG-A 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGAQAANVQK 65 >gi|92114621|ref|YP_574549.1| cold-shock DNA-binding protein family protein [Chromohalobacter salexigens DSM 3043] gi|91797711|gb|ABE59850.1| cold-shock DNA-binding protein family [Chromohalobacter salexigens DSM 3043] Length = 68 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI+P+ + GDD+F H S + + G +L +GQ V+++ Q Sbjct: 1 MATGTVKWFNDTKGYGFISPD---DGGDDLFAHFSEIQAEGFKSLQDGQKVSFEVTQGKK 57 Query: 62 NGKYSAENLKLV 73 A N+K+V Sbjct: 58 G--LQASNIKVV 67 >gi|86139271|ref|ZP_01057841.1| cold shock family protein [Roseobacter sp. MED193] gi|85824115|gb|EAQ44320.1| cold shock family protein [Roseobacter sp. MED193] Length = 68 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G DVF+H SAV +GL L + Q V+Y+ Q Sbjct: 1 MATGTVKWFNTTKGFGFIAPD---NGGSDVFVHISAVERSGLTGLADNQKVSYEM-QPGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA +L L+ Sbjct: 57 DGRESAVDLALL 68 >gi|85713889|ref|ZP_01044878.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] gi|85699015|gb|EAQ36883.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] Length = 66 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+NP KGYGFI P G G DVF+H SAV AGL L EGQ V ++ V N Sbjct: 1 MAKGIVKWFNPTKGYGFIQPAG---GGKDVFVHISAVERAGLSTLNEGQTVEFEEVAN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKV 66 >gi|297562583|ref|YP_003681557.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847031|gb|ADH69051.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 67 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+P+G G D F+H SA+ G NL E Q V ++ VQ Sbjct: 1 MAQGTVKWFNGEKGFGFISPDG---GGPDAFVHYSAIQGTGFRNLEENQRVEFEVVQGTR 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENV 64 >gi|225867733|ref|YP_002743681.1| cold shock protein [Streptococcus equi subsp. zooepidemicus] gi|225869669|ref|YP_002745616.1| cold shock protein [Streptococcus equi subsp. equi 4047] gi|225699073|emb|CAW92213.1| cold shock protein [Streptococcus equi subsp. equi 4047] gi|225701009|emb|CAW97768.1| cold shock protein [Streptococcus equi subsp. zooepidemicus] Length = 69 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ TE+G DVF H SA+ S G +L EGQ VT+D V++ Sbjct: 3 MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQSDGFRSLDEGQRVTFD-VEDGQ 57 Query: 62 NGKYSAENLKL 72 G + KL Sbjct: 58 RGPQAVNITKL 68 >gi|207856095|ref|YP_002242746.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206707898|emb|CAR32186.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|301157230|emb|CBW16717.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 70 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 6/74 (8%) Query: 1 MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M+ + G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ Sbjct: 1 MMSKIKGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT- 56 Query: 59 NDANGKYSAENLKL 72 N A G +A L Sbjct: 57 NGAKGPSAANVTAL 70 >gi|146338511|ref|YP_001203559.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278] gi|146191317|emb|CAL75322.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278] Length = 66 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P G D+F+H SAV AGL L EGQ + Y+ + N Sbjct: 1 MAKGTVKWFNPTKGYGFIQP---AAGGKDIFVHISAVQKAGLATLNEGQTIEYEEIAN-- 55 Query: 62 NGKYSAENLKL 72 G+ SAENLK+ Sbjct: 56 RGRSSAENLKV 66 >gi|153003150|ref|YP_001377475.1| cold-shock DNA-binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026723|gb|ABS24491.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 67 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT + G+DVF H SA+ G +L EGQ V +D V+ Sbjct: 1 MATGTVKWFNDAKGFGFITQD---NGGEDVFCHYSAIQGDGFKSLAEGQKVEFDVVKG-P 56 Query: 62 NGKYSAEN 69 G +A Sbjct: 57 KGLQAANV 64 >gi|57866866|ref|YP_188550.1| CSD family cold shock protein [Staphylococcus epidermidis RP62A] gi|242242680|ref|ZP_04797125.1| cold shock protein CspA [Staphylococcus epidermidis W23144] gi|57637524|gb|AAW54312.1| cold shock protein, CSD family [Staphylococcus epidermidis RP62A] gi|242233816|gb|EES36128.1| cold shock protein CspA [Staphylococcus epidermidis W23144] Length = 77 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 12 MKQGTVKWFNAEKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGD- 66 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 67 RGPQAANVVKL 77 >gi|15617086|ref|NP_240299.1| cold shock protein CspE [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|21672738|ref|NP_660805.1| cold shock protein CspE [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|219681838|ref|YP_002468224.1| cold shock protein E [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682393|ref|YP_002468777.1| cold shock protein E [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471542|ref|ZP_05635541.1| cold shock protein CspE [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|54036912|sp|P63237|CSPE_BUCAI RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|54036913|sp|P63238|CSPE_BUCAP RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|25296105|pir||A84987 cold shock-like protein cspE [imported] - Buchnera sp. (strain APS) gi|10039151|dbj|BAB13185.1| cold shock-like protein cspE [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|21623383|gb|AAM68016.1| cold shock like protein CspE [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|219622126|gb|ACL30282.1| cold shock protein E [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624681|gb|ACL30836.1| cold shock protein E [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086213|gb|ADP66295.1| cold shock protein CspE [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086791|gb|ADP66872.1| cold shock protein CspE [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087378|gb|ADP67458.1| cold shock protein CspE [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087874|gb|ADP67953.1| cold shock protein CspE [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 69 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEG-AKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVISL 69 >gi|293376634|ref|ZP_06622862.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis PC909] gi|325839413|ref|ZP_08166852.1| cold shock protein CspD [Turicibacter sp. HGF1] gi|292644860|gb|EFF62942.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis PC909] gi|325490533|gb|EGC92849.1| cold shock protein CspD [Turicibacter sp. HGF1] Length = 66 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI+ E G+DVF+H SA+ G L EGQ V++D V+ + Sbjct: 1 MNTGTVKWFNAEKGFGFISVE----GGEDVFVHYSAITGEGFKTLEEGQKVSFDIVEGN- 55 Query: 62 NGKYSAENLKL 72 G ++ +KL Sbjct: 56 RGAQASNVVKL 66 >gi|302536155|ref|ZP_07288497.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302445050|gb|EFL16866.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 67 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q V +D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVNFDVTQGPK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENVT 65 >gi|220931385|ref|YP_002508293.1| putative cold-shock DNA-binding domain protein [Halothermothrix orenii H 168] gi|219992695|gb|ACL69298.1| putative cold-shock DNA-binding domain protein [Halothermothrix orenii H 168] Length = 67 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 MV+ G +KW++ KGYGFI E GDDVF+H SA+ + G +L +G+ V ++ ++ D Sbjct: 1 MVYTGKVKWFDAKKGYGFIERE----DGDDVFVHFSAIQADGFKSLEDGEEVEFEIIEGD 56 Query: 61 ANGKYSAENLKL 72 G +A + L Sbjct: 57 -RGPQAANVVTL 67 >gi|312115752|ref|YP_004013348.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311220881|gb|ADP72249.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 69 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KWYN KGYGFI P+ + G DVF+H SA+ AGL L EGQ V+++ + Sbjct: 1 MNMGVVKWYNSQKGYGFIQPD---DGGKDVFVHVSALERAGLRGLVEGQKVSFEIQTDRR 57 Query: 62 NGKYSAENLKL 72 K SA NL++ Sbjct: 58 TDKTSAGNLQV 68 >gi|26246906|ref|NP_752946.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli CFT073] gi|91209916|ref|YP_539902.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli UTI89] gi|110804882|ref|YP_688402.1| stationary phase/starvation inducible regulatory protein CspD [Shigella flexneri 5 str. 8401] gi|237707154|ref|ZP_04537635.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia sp. 3_2_53FAA] gi|291281884|ref|YP_003498702.1| Cold shock protein [Escherichia coli O55:H7 str. CB9615] gi|293414163|ref|ZP_06656812.1| cold shock domain-containing protein CspD [Escherichia coli B185] gi|293433178|ref|ZP_06661606.1| cold shock domain-containing protein CspD [Escherichia coli B088] gi|332282225|ref|ZP_08394638.1| stationary phase/starvation inducible regulatory protein CspD [Shigella sp. D9] gi|26107306|gb|AAN79489.1|AE016758_93 Cold shock-like protein cspD [Escherichia coli CFT073] gi|91071490|gb|ABE06371.1| cold shock-like protein CspD [Escherichia coli UTI89] gi|110614430|gb|ABF03097.1| cold shock protein [Shigella flexneri 5 str. 8401] gi|222032609|emb|CAP75348.1| Cold shock-like protein cspD [Escherichia coli LF82] gi|226898364|gb|EEH84623.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia sp. 3_2_53FAA] gi|281600209|gb|ADA73193.1| putative Cold shock protein [Shigella flexneri 2002017] gi|290761757|gb|ADD55718.1| Cold shock protein [Escherichia coli O55:H7 str. CB9615] gi|291323997|gb|EFE63419.1| cold shock domain-containing protein CspD [Escherichia coli B088] gi|291434221|gb|EFF07194.1| cold shock domain-containing protein CspD [Escherichia coli B185] gi|332104577|gb|EGJ07923.1| stationary phase/starvation inducible regulatory protein CspD [Shigella sp. D9] Length = 84 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 11 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQG-P 66 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 67 KGNHASVIVPV 77 >gi|290963038|ref|YP_003494220.1| cold shock protein [Streptomyces scabiei 87.22] gi|260652564|emb|CBG75697.1| putative cold shock protein [Streptomyces scabiei 87.22] Length = 94 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +++ G L EGQ V +D Q Sbjct: 28 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNISAQGFRELLEGQKVNFDIAQGQK 84 Query: 62 NGKYSAENLKLV 73 +AEN+ LV Sbjct: 85 G--PTAENIVLV 94 >gi|251794338|ref|YP_003009069.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] gi|247541964|gb|ACS98982.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] Length = 66 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V ++ VQ + Sbjct: 1 MEQGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIQGDGFKSLDEGQRVEFNIVQGN- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQAENVVKL 66 >gi|77917987|ref|YP_355802.1| cold shock protein [Pelobacter carbinolicus DSM 2380] gi|77544070|gb|ABA87632.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus DSM 2380] Length = 66 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + +G DVF+H SA+ G +L EG V++D VQ Sbjct: 1 MAEGTVKWFNDAKGFGFIEQD----NGPDVFVHFSAIQGEGFKSLAEGDRVSFDVVQGQ- 55 Query: 62 NGKYSAENLKL 72 G SA K+ Sbjct: 56 KGPQSANVCKI 66 >gi|312880250|ref|ZP_07740050.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM 12260] gi|310783541|gb|EFQ23939.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM 12260] Length = 67 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KGYGFIT TE G DVF+H SA+ G L EGQ V+++ Q Sbjct: 1 MKTNGTVKWFNATKGYGFIT----TEDGKDVFVHFSAIQGDGFKTLDEGQRVSFEVTQG- 55 Query: 61 ANGKYSAENLKL 72 + G +++ KL Sbjct: 56 SKGPQASDVEKL 67 >gi|328951178|ref|YP_004368513.1| cold-shock DNA-binding domain protein [Marinithermus hydrothermalis DSM 14884] gi|328451502|gb|AEB12403.1| cold-shock DNA-binding domain protein [Marinithermus hydrothermalis DSM 14884] Length = 73 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N KGYGFI EG + DVF+H +A+ G L EG +VT++ Sbjct: 1 MQRGRVKWFNATKGYGFIEREGDS----DVFVHYTAINGTGFRTLNEGDIVTFEVEPGRP 56 Query: 62 NGKYSAENLKLVPKS 76 A N+ +V + Sbjct: 57 GKGPQATNVTVVEPA 71 >gi|326406197|gb|ADZ63268.1| cold shock protein beta-ribbon [Lactococcus lactis subsp. lactis CV56] Length = 91 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFIT +E G D+F H S++ S G +L EGQ V +D + Sbjct: 25 IMANGTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEGQKVEFDVEEGQ 80 Query: 61 ANGKYSAENLK 71 A N+ Sbjct: 81 RG--PQAVNIT 89 >gi|28377937|ref|NP_784829.1| cold shock protein CspP [Lactobacillus plantarum WCFS1] gi|254556121|ref|YP_003062538.1| cold shock protein CspP [Lactobacillus plantarum JDM1] gi|300766640|ref|ZP_07076557.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180118|ref|YP_003924246.1| cold shock protein CspP [Lactobacillus plantarum subsp. plantarum ST-III] gi|2493768|sp|P71478|CSP1_LACPL RecName: Full=Cold shock protein 1 gi|1620431|emb|CAA70005.1| csp [Lactobacillus plantarum] gi|9968450|emb|CAC06094.1| cold shock protein [Lactobacillus plantarum] gi|28270771|emb|CAD63676.1| cold shock protein CspP [Lactobacillus plantarum WCFS1] gi|254045048|gb|ACT61841.1| cold shock protein CspP [Lactobacillus plantarum JDM1] gi|300495740|gb|EFK30891.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045609|gb|ADN98152.1| cold shock protein CspP [Lactobacillus plantarum subsp. plantarum ST-III] Length = 66 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKGYGFIT E G+DVF+H SA+ + G L EGQ VT+D ++ Sbjct: 1 MKNGTVKWFNADKGYGFIT----GEDGNDVFVHFSAIQTDGFKTLEEGQKVTFD-EESSD 55 Query: 62 NGKYSAENL 70 G +A + Sbjct: 56 RGPQAANVV 64 >gi|74316697|ref|YP_314437.1| cold-shock DNA-binding protein family protein [Thiobacillus denitrificans ATCC 25259] gi|74056192|gb|AAZ96632.1| Possible Cold-shock DNA-binding domain protein [Thiobacillus denitrificans ATCC 25259] Length = 68 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H SA+ + G +L E Q V+++ Sbjct: 1 METGTVKWFNDAKGFGFITPD---NGGEDLFAHFSAINANGFKSLQENQRVSFEVTTGPK 57 Query: 62 NGKYSAENLKLV 73 A N+++V Sbjct: 58 G--KQASNIQVV 67 >gi|226223965|ref|YP_002758072.1| cold shock protein [Listeria monocytogenes Clip81459] gi|1001878|emb|CAA62903.1| CspA protein [Listeria monocytogenes] gi|225876427|emb|CAS05136.1| Putative cold shock protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|313608931|gb|EFR84686.1| conserved domain protein [Listeria monocytogenes FSL F2-208] Length = 68 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E +GDDVF+H SA+ G +L EGQ VT+D V+ Sbjct: 3 MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQGDGFKSLDEGQAVTFD-VEEGQ 57 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 58 RGPQAANVQK 67 >gi|306821247|ref|ZP_07454861.1| cold shock protein CspA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550759|gb|EFM38736.1| cold shock protein CspA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 65 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFI E GDDVF+H SA+ + G L EGQ V ++ + A G Sbjct: 2 TGKVKWFNAEKGFGFIERE----GGDDVFVHFSAIQTDGFKTLDEGQNVEFEIT-DGARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|229121251|ref|ZP_04250482.1| Cold shock-like protein cspB [Bacillus cereus 95/8201] gi|228662096|gb|EEL17705.1| Cold shock-like protein cspB [Bacillus cereus 95/8201] Length = 77 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + + G Sbjct: 14 QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 68 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 69 PQAANVVKL 77 >gi|163791309|ref|ZP_02185723.1| cold shock protein [Carnobacterium sp. AT7] gi|159873450|gb|EDP67540.1| cold shock protein [Carnobacterium sp. AT7] Length = 66 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E GDD+F+H SA+ G +L EGQ V ++ V+ + Sbjct: 1 MEKGTVKWFNAEKGFGFIEVE----GGDDIFVHFSAITGDGFKSLEEGQAVEFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGAQAANVVKL 66 >gi|159042565|ref|YP_001531359.1| cold-shock DNA-binding domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157910325|gb|ABV91758.1| cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL 12] Length = 68 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G DVF+H SAV AGL L + Q VT+D ++ Sbjct: 1 MATGTVKWFNATKGFGFIAPDG---GSRDVFVHISAVERAGLTGLEDNQKVTFDI-ESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESAANLAL 67 >gi|94676996|ref|YP_588711.1| cold shock protein CspE [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220146|gb|ABF14305.1| cold shock-like protein CspE [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 69 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ N A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 60 Query: 64 KYSAENLKL 72 +A+ + + Sbjct: 61 PSAADVIAI 69 >gi|319651256|ref|ZP_08005386.1| cold shock protein cspD [Bacillus sp. 2_A_57_CT2] gi|317397036|gb|EFV77744.1| cold shock protein cspD [Bacillus sp. 2_A_57_CT2] Length = 66 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E GDDVF+H +A+ G +L EGQ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIQGEGFKSLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|56964834|ref|YP_176565.1| cold shock protein CspC [Bacillus clausii KSM-K16] gi|56911077|dbj|BAD65604.1| cold shock protein CspC [Bacillus clausii KSM-K16] Length = 65 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ S G L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFNAEKGFGFIERE----DGDDVFVHFSAINSDGFKTLDEGQDVEFEIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|269956067|ref|YP_003325856.1| cold-shock DNA-binding domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269304748|gb|ACZ30298.1| cold-shock DNA-binding domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 67 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +GS+KW+N +KGYGFI +G G DVF+H SA+ S G +L E Q V ++ Q Sbjct: 1 MAQGSVKWFNAEKGYGFIAQDG---GGADVFVHYSAIQSNGYRSLEEAQRVEFEITQG-P 56 Query: 62 NGKYSAENLKL 72 G + + + L Sbjct: 57 KGPQAEQVVPL 67 >gi|325920664|ref|ZP_08182574.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC 19865] gi|325548854|gb|EGD19798.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC 19865] Length = 68 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 5/73 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+PE + DVF H SA+ S G +L EGQ V+YD Q Sbjct: 1 MQNGTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVSYDVTQGPK 57 Query: 62 NGKYSAENLKLVP 74 A N+ V Sbjct: 58 G--AQASNITPVE 68 >gi|312115790|ref|YP_004013386.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311220919|gb|ADP72287.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 69 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K++N +KGYGFI P+ DVF+H SAV AG+ + EGQ ++++ V++ Sbjct: 1 MNTGTVKFFNVNKGYGFIQPDS---GSADVFVHISAVERAGMRTIVEGQKLSFEIVRDAR 57 Query: 62 NGKYSAENLK 71 +GK SAENL+ Sbjct: 58 SGKSSAENLQ 67 >gi|225427973|ref|XP_002277628.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 214 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP+ + GDD+F+H+S++ S G +L EG+ V + V++ +G Sbjct: 5 TGTVKWFNDQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDG 60 Query: 64 KYSAENLK 71 + A ++ Sbjct: 61 RTKAVDVT 68 >gi|110835605|ref|YP_694464.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2] gi|110648716|emb|CAL18192.1| cold-shock domain family protein [Alcanivorax borkumensis SK2] Length = 67 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+ + + G DVF+H SA+ +G L EGQ V+++ Q Sbjct: 1 MATGTVKWFNESKGFGFISQD---DGGADVFVHFSAITGSGFKTLAEGQKVSFEIQQG-P 56 Query: 62 NGKYSAENL 70 G +A + Sbjct: 57 KGPQAANVV 65 >gi|77463958|ref|YP_353462.1| cold-shock DNA-binding protein family protein [Rhodobacter sphaeroides 2.4.1] gi|126462801|ref|YP_001043915.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|146276900|ref|YP_001167059.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|332558830|ref|ZP_08413152.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides WS8N] gi|77388376|gb|ABA79561.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides 2.4.1] gi|126104465|gb|ABN77143.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17029] gi|145555141|gb|ABP69754.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17025] gi|332276542|gb|EGJ21857.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 68 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL L++ Q + Y+ Q+ Sbjct: 1 MPTGTVKWFNSTKGFGFIAPD---DGGKDVFVHISAVERAGLKGLSDNQKIGYEL-QSGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA +L+L+ Sbjct: 57 DGRSSAGDLRLL 68 >gi|291561124|emb|CBL39923.1| cold-shock DNA-binding protein family [butyrate-producing bacterium SS3/4] Length = 70 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KGYGFI+ + GDDVF+H SA+ G L EGQ VT+D Q+ Sbjct: 1 MNNGTVKWFNSEKGYGFISND---NGGDDVFVHFSAIVGDGFKTLEEGQKVTFDTEQDPK 57 Query: 62 N-GKYSAENL 70 N K A N+ Sbjct: 58 NSKKLRAVNV 67 >gi|281500776|pdb|3I2Z|B Chain B, Structure Of Cold Shock Protein E From Salmonella Typhimurium gi|281500777|pdb|3I2Z|A Chain A, Structure Of Cold Shock Protein E From Salmonella Typhimurium Length = 71 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ N A G Sbjct: 7 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 62 Query: 64 KYSAENLKL 72 +A L Sbjct: 63 PSAANVTAL 71 >gi|220932483|ref|YP_002509391.1| putative cold-shock DNA-binding domain protein [Halothermothrix orenii H 168] gi|219993793|gb|ACL70396.1| putative cold-shock DNA-binding domain protein [Halothermothrix orenii H 168] Length = 67 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M++ G +KW++P KGYGFI + GDDVF+H SA+ G L EGQ V ++ V+++ Sbjct: 1 MIYSGKVKWFDPKKGYGFIERD----EGDDVFVHFSAIKEEGFKTLEEGQEVEFEIVESE 56 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 57 -RGPQAANVVKL 67 >gi|262200536|ref|YP_003271744.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] gi|262083883|gb|ACY19851.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] Length = 79 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+ + G DVF+H SA+ +G NL E Q V +D Q Sbjct: 13 MAQGTVKWFNGEKGFGFIAPD---DQGADVFVHFSAIQGSGFRNLEEAQRVEFDVEQGAK 69 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 70 G--LQATNVSVI 79 >gi|29827367|ref|NP_822001.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29604466|dbj|BAC68536.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 67 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF+H SA+ SAG L EGQ V +D Q Sbjct: 1 MATGTVKWFNAEKGFGFIEQEG---GGPDVFVHYSAINSAGFRELQEGQKVNFDVTQGPK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENVT 65 >gi|90425745|ref|YP_534115.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90107759|gb|ABD89796.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB18] Length = 66 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI P + G DVF+H SAV AGL L EGQ V ++ V N Sbjct: 1 MAKGTVKWFNATKGFGFIQP---SNGGKDVFVHISAVEKAGLSTLNEGQTVEFEEVAN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKV 66 >gi|322382422|ref|ZP_08056325.1| major cold-shock protein RNA helicase co-factor RNA co-chaperone-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153639|gb|EFX46018.1| major cold-shock protein RNA helicase co-factor RNA co-chaperone-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 65 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V +D V+ A G Sbjct: 2 QGKVKWFNAEKGYGFIERE----DGGDVFVHFSAIQGEGFKTLEEGQSVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|319949463|ref|ZP_08023522.1| cold-shock DNA-binding domain protein [Dietzia cinnamea P4] gi|319436867|gb|EFV91928.1| cold-shock DNA-binding domain protein [Dietzia cinnamea P4] Length = 67 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFI P+ + DVF H SA+ +G +L E Q V++D Q Sbjct: 1 MATGTVKWFNADKGFGFIAPD---DGSADVFAHFSAIQGSGYRSLEENQQVSFDVAQGAK 57 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 58 G--LQAENITPM 67 >gi|13472379|ref|NP_103946.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|260467123|ref|ZP_05813302.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|319781908|ref|YP_004141384.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14023125|dbj|BAB49732.1| probable cold shock protein [Mesorhizobium loti MAFF303099] gi|259029135|gb|EEW30432.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|317167796|gb|ADV11334.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 70 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N KG+GFITP+G DVF+H SA+ ++GL L +GQ VT+D + Sbjct: 1 MAQTGTVKFFNATKGFGFITPDG---GAKDVFVHISAIEASGLRTLVDGQKVTFDVEPDR 57 Query: 61 ANGKYSAENLK 71 A NL+ Sbjct: 58 MGKGPKAVNLR 68 >gi|134297915|ref|YP_001111411.1| cold-shock DNA-binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134050615|gb|ABO48586.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens MI-1] Length = 66 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI TE G DVF+H SA+ G L EGQ V+++ VQ + Sbjct: 1 MQKGTVKWFNAEKGYGFIE----TEEGSDVFVHFSAITGDGFKTLEEGQRVSFNVVQGN- 55 Query: 62 NGKYSAENLKL 72 G + E +KL Sbjct: 56 RGPQAEEVVKL 66 >gi|296332857|ref|ZP_06875317.1| cold-shock protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673203|ref|YP_003864875.1| cold-shock protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296150137|gb|EFG91026.1| cold-shock protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411447|gb|ADM36566.1| cold-shock protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 67 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI + +GDDVF+H SA+ G +L EGQ VT+D Q A Sbjct: 1 MEQGTVKWFNAEKGFGFIERD----NGDDVFVHFSAIQGDGFKSLDEGQKVTFDVEQG-A 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGAQAANVQK 65 >gi|27904911|ref|NP_778037.1| cold shock protein CspE [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372204|sp|Q89A90|CSPE_BUCBP RecName: Full=Cold shock-like protein CspE; Short=CSP-E gi|27904309|gb|AAO27142.1| cold shock protein CspA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 69 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L+EGQ V ++ + A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLSEGQSVEFEITEG-AKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVISL 69 >gi|223985451|ref|ZP_03635510.1| hypothetical protein HOLDEFILI_02816 [Holdemania filiformis DSM 12042] gi|223962540|gb|EEF66993.1| hypothetical protein HOLDEFILI_02816 [Holdemania filiformis DSM 12042] Length = 66 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFIT T+ G DVF+H SA+ + G L +G+ V+++ VQ+D Sbjct: 1 MVTGKVKWFNAEKGYGFIT----TDEGKDVFVHYSAIQTDGFKTLDDGEAVSFEVVQSD- 55 Query: 62 NGKYSAENLKL 72 G+ +A KL Sbjct: 56 RGEQAANVCKL 66 >gi|30249693|ref|NP_841763.1| cold shock DNA-binding domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30180730|emb|CAD85642.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718] Length = 67 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + +D+F H SA+ G L EGQ V+++ Q Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMTGFKTLKEGQKVSFEVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|331004967|ref|ZP_08328377.1| Cold shock protein [gamma proteobacterium IMCC1989] gi|330421209|gb|EGG95465.1| Cold shock protein [gamma proteobacterium IMCC1989] Length = 98 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G+D+F H S++ G L GQ V++D + D Sbjct: 1 MATGTVKWFNNAKGYGFILPD---DGGEDLFAHYSSIEMDGYKTLKAGQPVSFDTIGGDK 57 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 58 G--LHATNIT 65 >gi|284030059|ref|YP_003379990.1| cold-shock DNA-binding domain-containing protein [Kribbella flavida DSM 17836] gi|283809352|gb|ADB31191.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM 17836] Length = 67 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI+ +G G DVF+H SA+A+ G L E Q V +D Q Sbjct: 1 MASGTVKWFNGEKGFGFISQDG---GGADVFVHYSAIATDGFRTLDENQKVEFDLAQGPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ V Sbjct: 58 G--PQAENVRPV 67 >gi|237809065|ref|YP_002893505.1| cold-shock DNA-binding domain-containing protein [Tolumonas auensis DSM 9187] gi|237501326|gb|ACQ93919.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM 9187] Length = 72 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ E GDD+F H S + G L GQ V ++ VQ Sbjct: 1 MATGTVKWFNNAKGFGFICPD---EGGDDIFAHYSTIDMNGYKTLKAGQPVEFE-VQAGP 56 Query: 62 NGKYSAENLKLVPKSSN 78 G ++ +VP +S Sbjct: 57 KGSHA---TSIVPTASQ 70 >gi|84687901|ref|ZP_01015768.1| cold shock family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664095|gb|EAQ10592.1| cold shock family protein [Rhodobacterales bacterium HTCC2654] Length = 68 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H SAV AG+ L + Q V+Y+ + Sbjct: 1 MATGTVKWFNATKGYGFIAPD---DGGKDVFVHISAVERAGMTGLADNQKVSYEMI-PGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA +LK + Sbjct: 57 DGRESAGDLKAL 68 >gi|303257728|ref|ZP_07343740.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47] gi|303257776|ref|ZP_07343787.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47] gi|331000987|ref|ZP_08324623.1| putative cold shock domain protein CspD [Parasutterella excrementihominis YIT 11859] gi|302859458|gb|EFL82538.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47] gi|302859698|gb|EFL82777.1| putative cold-shock protein [Burkholderiales bacterium 1_1_47] gi|329569762|gb|EGG51526.1| putative cold shock domain protein CspD [Parasutterella excrementihominis YIT 11859] Length = 67 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFITP+ + G+D+F H SA+ G L +GQ VT+D + + Sbjct: 1 MATGTVKWFNDAKGYGFITPD---DGGEDLFAHFSAIKMDGFKTLKQGQRVTFDLKEGEK 57 Query: 62 NGKYSAENLK 71 A+N+K Sbjct: 58 G--KQADNIK 65 >gi|261341246|ref|ZP_05969104.1| putative cold shock protein [Enterobacter cancerogenus ATCC 35316] gi|288316550|gb|EFC55488.1| putative cold shock protein [Enterobacter cancerogenus ATCC 35316] Length = 69 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ N A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVMAL 69 >gi|254466858|ref|ZP_05080269.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] gi|206687766|gb|EDZ48248.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] Length = 69 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE + G D+F+H SAV +GL L + Q VTY+ + Sbjct: 1 MATGTVKWFNTTKGYGFIAPE---DGGKDIFVHISAVERSGLTGLADNQKVTYEL-RAGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA ++ LV Sbjct: 57 DGRESAVDIALV 68 >gi|126739561|ref|ZP_01755253.1| cold-shock DNA-binding domain protein [Roseobacter sp. SK209-2-6] gi|126719207|gb|EBA15917.1| cold-shock DNA-binding domain protein [Roseobacter sp. SK209-2-6] Length = 68 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+G DVF+H SAV +GL L + Q VT+D + Sbjct: 1 MASGTVKWFNSTKGYGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVTFDI-EPGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESAVNLAL 67 >gi|307943089|ref|ZP_07658434.1| putative cold shock protein [Roseibium sp. TrichSKD4] gi|307773885|gb|EFO33101.1| putative cold shock protein [Roseibium sp. TrichSKD4] Length = 69 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KGYGFI PE + DVF+H SAV AG+ L+EGQ V+++ VQ+ Sbjct: 1 MAIGTVKFFNTTKGYGFIQPE---DGSQDVFVHISAVERAGMTTLSEGQKVSFEVVQDRR 57 Query: 62 NGKYSAENLKLV 73 +GK +A+ L V Sbjct: 58 SGKSAADGLAAV 69 >gi|251790554|ref|YP_003005275.1| cold shock protein CspE [Dickeya zeae Ech1591] gi|271499690|ref|YP_003332715.1| cold-shock DNA-binding domain-containing protein [Dickeya dadantii Ech586] gi|307130032|ref|YP_003882048.1| DNA-binding transcriptional repressor [Dickeya dadantii 3937] gi|247539175|gb|ACT07796.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591] gi|270343245|gb|ACZ76010.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586] gi|306527561|gb|ADM97491.1| DNA-binding transcriptional repressor [Dickeya dadantii 3937] Length = 69 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-SGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|160914188|ref|ZP_02076410.1| hypothetical protein EUBDOL_00197 [Eubacterium dolichum DSM 3991] gi|158433999|gb|EDP12288.1| hypothetical protein EUBDOL_00197 [Eubacterium dolichum DSM 3991] Length = 66 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFIT T+ G DVF+H S++ + G L EGQ VT+D V++D Sbjct: 1 MSTGKVKWFNAEKGYGFIT----TDEGKDVFVHYSSINADGFKTLEEGQAVTFDVVESDR 56 Query: 62 NGKYSAENLKL 72 A N+ + Sbjct: 57 G--EQAANVTV 65 >gi|147856673|emb|CAN81359.1| hypothetical protein VITISV_040408 [Vitis vinifera] Length = 219 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP+ + GDD+F+H+S++ S G +L EG+ V + V++ +G Sbjct: 5 TGTVKWFNDQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLGEGEAVEF-VVESSDDG 60 Query: 64 KYSAENLK 71 + A ++ Sbjct: 61 RTKAVDVT 68 >gi|16974805|pdb|1HZB|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability gi|16974806|pdb|1HZB|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability Length = 66 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGPQAANVVK 65 >gi|312962258|ref|ZP_07776750.1| cold-shock protein, DNA-binding [Pseudomonas fluorescens WH6] gi|311283595|gb|EFQ62184.1| cold-shock protein, DNA-binding [Pseudomonas fluorescens WH6] Length = 67 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFIT +G G DVF+H SA+ S G L E Q V ++ Q Sbjct: 1 MATGTVKWFNAEKGFGFITQDG---GGADVFVHFSAIQSDGFKTLEENQKVEFEIEQGQK 57 Query: 62 NGKYSAENLKLV 73 A ++++V Sbjct: 58 G--PQATSVRVV 67 >gi|46200113|ref|YP_005780.1| cold shock protein [Thermus thermophilus HB27] gi|46197741|gb|AAS82153.1| cold shock protein [Thermus thermophilus HB27] Length = 85 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI EG T DVF+H +A+ + G L EG +VT+D Sbjct: 13 MQKGRVKWFNAEKGYGFIEREGDT----DVFVHYTAINAKGFRTLNEGDIVTFDVEPGRN 68 Query: 62 NGKYSAENLKLVPKS 76 A N+ +V + Sbjct: 69 GKGPQAVNVTVVEPA 83 >gi|229099617|ref|ZP_04230545.1| hypothetical protein bcere0020_48350 [Bacillus cereus Rock3-29] gi|229105794|ref|ZP_04236423.1| hypothetical protein bcere0019_49200 [Bacillus cereus Rock3-28] gi|228677683|gb|EEL31931.1| hypothetical protein bcere0019_49200 [Bacillus cereus Rock3-28] gi|228683913|gb|EEL37863.1| hypothetical protein bcere0020_48350 [Bacillus cereus Rock3-29] Length = 65 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V +D V + A G Sbjct: 2 QGKVKWFNAEKGFGFIERE----DGEDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|92115994|ref|YP_575723.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91798888|gb|ABE61263.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 73 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI P+ G DVF+H SAV AGL +L EG V+Y+ V N G Sbjct: 9 TGTVKWFNATKGFGFIQPDS---GGKDVFVHISAVERAGLSSLNEGAKVSYEVVAN--RG 63 Query: 64 KYSAENLKL 72 K SAE+L++ Sbjct: 64 KESAEDLRV 72 >gi|257867783|ref|ZP_05647436.1| cold-shock protein [Enterococcus casseliflavus EC30] gi|257874110|ref|ZP_05653763.1| cold-shock protein [Enterococcus casseliflavus EC10] gi|257876671|ref|ZP_05656324.1| cold-shock protein [Enterococcus casseliflavus EC20] gi|325571022|ref|ZP_08146594.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] gi|257801866|gb|EEV30769.1| cold-shock protein [Enterococcus casseliflavus EC30] gi|257808274|gb|EEV37096.1| cold-shock protein [Enterococcus casseliflavus EC10] gi|257810837|gb|EEV39657.1| cold-shock protein [Enterococcus casseliflavus EC20] gi|325156107|gb|EGC68293.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] Length = 66 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFIT + GDDVF+H SA+ G +L EGQ V + V+ A Sbjct: 1 MEHGKVKWFNNEKGFGFITVD----GGDDVFVHFSAIQGDGFKSLEEGQEVEFTIVEG-A 55 Query: 62 NGKYSAENLKL 72 G +AE K+ Sbjct: 56 RGPQAAEVTKV 66 >gi|75759683|ref|ZP_00739766.1| Cold shock protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492830|gb|EAO55963.1| Cold shock protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 77 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + + G Sbjct: 14 QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 68 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 69 PQAANVVKL 77 >gi|78067321|ref|YP_370090.1| cold-shock DNA-binding protein family protein [Burkholderia sp. 383] gi|107023458|ref|YP_621785.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia AU 1054] gi|116690540|ref|YP_836163.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia HI2424] gi|170733881|ref|YP_001765828.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|254247419|ref|ZP_04940740.1| Cold shock protein [Burkholderia cenocepacia PC184] gi|77968066|gb|ABB09446.1| cold-shock DNA-binding protein family [Burkholderia sp. 383] gi|105893647|gb|ABF76812.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia AU 1054] gi|116648629|gb|ABK09270.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia HI2424] gi|124872195|gb|EAY63911.1| Cold shock protein [Burkholderia cenocepacia PC184] gi|169817123|gb|ACA91706.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia MC0-3] Length = 67 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D VQ Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAITMNGFKTLKEGQKVSFDVVQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|16127133|ref|NP_421697.1| cold-shock domain-contain protein [Caulobacter crescentus CB15] gi|221235933|ref|YP_002518370.1| cold shock protein [Caulobacter crescentus NA1000] gi|13424521|gb|AAK24865.1| cold-shock domain family protein [Caulobacter crescentus CB15] gi|220965106|gb|ACL96462.1| cold shock protein [Caulobacter crescentus NA1000] Length = 69 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G D+F+H SAV +GL +L EGQ ++Y+ + Sbjct: 1 MATGTVKWFNSTKGFGFIQPD---NGGADIFVHISAVERSGLGSLNEGQKISYEPEVDRR 57 Query: 62 NGKYSAENLK 71 +GK SA L+ Sbjct: 58 SGKTSAGQLQ 67 >gi|283479166|emb|CAY75082.1| Cold shock-like protein cspE (CSP-E) [Erwinia pyrifoliae DSM 12163] Length = 79 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ N A G Sbjct: 15 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 70 Query: 64 KYSAEN 69 +A Sbjct: 71 PSAANV 76 >gi|163814818|ref|ZP_02206207.1| hypothetical protein COPEUT_00969 [Coprococcus eutactus ATCC 27759] gi|158450453|gb|EDP27448.1| hypothetical protein COPEUT_00969 [Coprococcus eutactus ATCC 27759] Length = 71 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI+ + E+G DVF+H SA+ + G L EGQ V++D + Sbjct: 1 MKNGTVKWFNGEKGYGFISDD---ETGKDVFVHFSAINADGYKTLNEGQKVSFDVEADPK 57 Query: 62 NG-KYSAENLKLV 73 + K A N+ +V Sbjct: 58 DASKERATNVTVV 70 >gi|226227592|ref|YP_002761698.1| cold shock protein [Gemmatimonas aurantiaca T-27] gi|226090783|dbj|BAH39228.1| cold shock protein [Gemmatimonas aurantiaca T-27] Length = 69 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KG+GFITP ++ D F+H SA+ G +LTEG+ V +D VQ Sbjct: 1 MRTTGTVKWFNDAKGFGFITP---SDGQKDCFVHHSAIQGNGFKSLTEGETVEFDIVQGQ 57 Query: 61 ANGKYSAENLK 71 +AEN+ Sbjct: 58 KG--PAAENVT 66 >gi|116334505|ref|YP_796032.1| cold shock protein [Lactobacillus brevis ATCC 367] gi|116099852|gb|ABJ65001.1| cold-shock DNA-binding protein family [Lactobacillus brevis ATCC 367] Length = 67 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKGYGFIT E+G DVF+H SA+ S G L EGQ V+ D Q D Sbjct: 1 MEQGTVKWFNADKGYGFIT----LENGSDVFVHFSAINSEGFKTLEEGQHVSLDVEQGDR 56 Query: 62 NGKYSAENLKLV 73 A N+ +V Sbjct: 57 G--PQAANVSVV 66 >gi|145595639|ref|YP_001159936.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440] gi|159038893|ref|YP_001538146.1| cold-shock DNA-binding domain-containing protein [Salinispora arenicola CNS-205] gi|145304976|gb|ABP55558.1| cold-shock DNA-binding protein family [Salinispora tropica CNB-440] gi|157917728|gb|ABV99155.1| cold-shock DNA-binding domain protein [Salinispora arenicola CNS-205] Length = 67 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H S+++ +G L+EGQ V +D Q Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGPDVFVHYSSISMSGYRELSEGQKVDFDVTQGQK 57 Query: 62 NGKYSAENLKLV 73 A+N++ + Sbjct: 58 G--PQADNVRPM 67 >gi|21230743|ref|NP_636660.1| cold shock protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21242090|ref|NP_641672.1| cold shock protein [Xanthomonas axonopodis pv. citri str. 306] gi|66769261|ref|YP_244023.1| cold shock protein [Xanthomonas campestris pv. campestris str. 8004] gi|78046945|ref|YP_363120.1| cold shock protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84623422|ref|YP_450794.1| cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166712821|ref|ZP_02244028.1| cold shock protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188577268|ref|YP_001914197.1| hypothetical protein PXO_01731 [Xanthomonas oryzae pv. oryzae PXO99A] gi|188992412|ref|YP_001904422.1| cold shock protein [Xanthomonas campestris pv. campestris str. B100] gi|289662812|ref|ZP_06484393.1| cold shock protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670308|ref|ZP_06491383.1| cold shock protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325915841|ref|ZP_08178140.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] gi|325926981|ref|ZP_08188256.1| cold-shock DNA-binding protein family [Xanthomonas perforans 91-118] gi|21107498|gb|AAM36208.1| cold shock protein [Xanthomonas axonopodis pv. citri str. 306] gi|21112338|gb|AAM40584.1| cold shock protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574593|gb|AAY50003.1| cold shock protein [Xanthomonas campestris pv. campestris str. 8004] gi|78035375|emb|CAJ23020.1| cold shock protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84367362|dbj|BAE68520.1| cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|167734172|emb|CAP52380.1| cold shock protein [Xanthomonas campestris pv. campestris] gi|188521720|gb|ACD59665.1| conserved domain protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|325537962|gb|EGD09659.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] gi|325542640|gb|EGD14107.1| cold-shock DNA-binding protein family [Xanthomonas perforans 91-118] Length = 68 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 5/73 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+PE + DVF H SA+ S G +L EGQ V+YD Q Sbjct: 1 MPNGTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVSYDVTQGPK 57 Query: 62 NGKYSAENLKLVP 74 A N+ V Sbjct: 58 G--AQASNITPVE 68 >gi|238795829|ref|ZP_04639342.1| Cold shock-like protein cspD [Yersinia mollaretii ATCC 43969] gi|238720292|gb|EEQ12095.1| Cold shock-like protein cspD [Yersinia mollaretii ATCC 43969] Length = 85 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D + Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHEGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|16126859|ref|NP_421423.1| cold-shock domain-contain protein [Caulobacter crescentus CB15] gi|221235641|ref|YP_002518078.1| cold shock protein [Caulobacter crescentus NA1000] gi|13424199|gb|AAK24591.1| cold-shock domain family protein [Caulobacter crescentus CB15] gi|220964814|gb|ACL96170.1| cold shock protein [Caulobacter crescentus NA1000] Length = 69 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+NP KG+GFI PE + G DVF+H +AV +GL L EG V Y+ ++ Sbjct: 1 MANGVVKWFNPAKGFGFIQPE---DGGQDVFVHIAAVERSGLSGLNEGDQVAYELEEDRR 57 Query: 62 NGKYSAENLKLV 73 +GK SA NL+++ Sbjct: 58 SGKTSAGNLRIL 69 >gi|330502213|ref|YP_004379082.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] gi|328916499|gb|AEB57330.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] Length = 204 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + +Q D Sbjct: 134 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRVLIEGQRVEFSVMQRDK 189 Query: 62 NGKYSAENL 70 AE++ Sbjct: 190 G--LQAEDV 196 >gi|296444335|ref|ZP_06886300.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] gi|296257982|gb|EFH05044.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] Length = 70 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ ++Y+ V + Sbjct: 1 MQTGVVKWFNSQKGFGFIQPDS---GGADVFVHISAVERAGLRGLAEGQKISYETVIDKR 57 Query: 62 NGKYSAENLKL 72 +GK SA+ L++ Sbjct: 58 SGKSSADQLQV 68 >gi|95929691|ref|ZP_01312433.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] gi|95134388|gb|EAT16045.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] Length = 66 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + +G DVF+H SA+ S G +L EG V++D + Sbjct: 1 MAEGTVKWFNDTKGFGFIEQD----NGPDVFVHFSAIQSEGFKSLAEGDRVSFDVTEGQ- 55 Query: 62 NGKYSAENLKL 72 G SA K+ Sbjct: 56 KGPQSANVCKI 66 >gi|332283953|ref|YP_004415864.1| cold-shock protein [Pusillimonas sp. T7-7] gi|330427906|gb|AEC19240.1| cold-shock protein [Pusillimonas sp. T7-7] Length = 80 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP+ G+D+F H S++ G L EGQ V ++ Q G Sbjct: 16 TGTVKWFNDAKGFGFITPD---NGGEDLFAHFSSIQMNGFKTLKEGQKVAFEIAQG-PKG 71 Query: 64 KYS 66 K + Sbjct: 72 KQA 74 >gi|291295051|ref|YP_003506449.1| cold-shock DNA-binding domain-containing protein [Meiothermus ruber DSM 1279] gi|290470010|gb|ADD27429.1| cold-shock DNA-binding domain protein [Meiothermus ruber DSM 1279] Length = 75 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI E E DVF+H SA+ S G L EG +VT++ Sbjct: 1 MQKGKVKWFNAEKGYGFIQRE---EGEPDVFVHYSAIQSRGFRTLNEGDVVTFEIEPGKN 57 Query: 62 NGKYSAENLKLVPKS 76 A N+ +V + Sbjct: 58 GKGPQAANVSVVEPA 72 >gi|329295571|ref|ZP_08252907.1| cold shock protein CspE [Plautia stali symbiont] Length = 69 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-DGAKG 60 Query: 64 KYSAENLKL 72 +A L Sbjct: 61 PSAANVTAL 69 >gi|270291153|ref|ZP_06197376.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus acidilactici 7_4] gi|270280549|gb|EFA26384.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus acidilactici 7_4] Length = 66 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFIT E G DVF+H SA+ S G L EGQ V++D ++D Sbjct: 1 MEQGTVKWFNADKGFGFITRE----DGSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESDR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQAVNVE 64 >gi|238762119|ref|ZP_04623092.1| Cold shock-like protein cspD [Yersinia kristensenii ATCC 33638] gi|238699847|gb|EEP92591.1| Cold shock-like protein cspD [Yersinia kristensenii ATCC 33638] Length = 85 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D + Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHEGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|311743915|ref|ZP_07717721.1| CspA family cold shock transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311313045|gb|EFQ82956.1| CspA family cold shock transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 67 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFI P+G G+D+F H S++A++G +L E Q V +D Q Sbjct: 1 MATGTVKWFNADKGFGFIAPDG---GGEDLFAHFSSIAASGFRSLDENQKVEFDVEQGQK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--LQAANIRPL 67 >gi|298292879|ref|YP_003694818.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296929390|gb|ADH90199.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 70 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G D F+H SAV AG+ +L EGQ V ++ V + Sbjct: 1 MTTGTVKWFNSQKGFGFIAPD---DGGSDAFVHISAVERAGMSDLREGQKVDFELVADQR 57 Query: 62 NGKYSAENLK 71 +GK SA+ L+ Sbjct: 58 SGKMSADKLQ 67 >gi|228923915|ref|ZP_04087192.1| hypothetical protein bthur0011_48890 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835714|gb|EEM81078.1| hypothetical protein bthur0011_48890 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 65 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + A G Sbjct: 2 QGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGFKSLEEGQQVEFDIV-DGARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|227329249|ref|ZP_03833273.1| cold shock-like protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 73 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|308172349|ref|YP_003919054.1| cold-shock protein [Bacillus amyloliquefaciens DSM 7] gi|307605213|emb|CBI41584.1| cold-shock protein [Bacillus amyloliquefaciens DSM 7] gi|328552171|gb|AEB22663.1| cold-shock protein [Bacillus amyloliquefaciens TA208] gi|328910438|gb|AEB62034.1| cold-shock protein [Bacillus amyloliquefaciens LL3] Length = 66 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E +GDDVF+H SA+ S G +L EGQ VT+D Q A Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQG-A 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGAQAANVQK 65 >gi|291303552|ref|YP_003514830.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290572772|gb|ADD45737.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis DSM 44728] Length = 66 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +GS+KW+N +KGYGF+ + G+DVF+H SA+ + G +L +GQ V +D Q Sbjct: 1 MAQGSVKWFNAEKGYGFLAVD----GGEDVFVHFSAIQADGYRSLEDGQRVEFDIAQGQK 56 Query: 62 NGKYSAENLKLV 73 AEN+++V Sbjct: 57 G--PQAENVRIV 66 >gi|218670224|ref|ZP_03519895.1| probable cold shock protein [Rhizobium etli GR56] Length = 69 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D ++ Sbjct: 1 MTTGTVKWFNSTKGFGFIQPD---NGGTDAFVHISAVERAGMRELVEGQKIGFDLERDHK 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKMSACNLQ 67 >gi|163735233|ref|ZP_02142668.1| cold shock protein CspA [Roseobacter litoralis Och 149] gi|161391447|gb|EDQ15781.1| cold shock protein CspA [Roseobacter litoralis Och 149] Length = 68 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G DVF+H SAV AGL L + Q VT+D ++ Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLADNQKVTFDI-EDGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N+ L Sbjct: 57 DGRQSATNIAL 67 >gi|86156680|ref|YP_463465.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|197120682|ref|YP_002132633.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|220915394|ref|YP_002490698.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|85773191|gb|ABC80028.1| cold-shock DNA-binding protein family [Anaeromyxobacter dehalogenans 2CP-C] gi|196170531|gb|ACG71504.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|219953248|gb|ACL63632.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 67 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT + + G+DVF H SA++ G +L EGQ V +D V+ Sbjct: 1 MATGTVKWFNDAKGFGFITQD---DGGEDVFCHYSAISGDGFKSLAEGQKVEFDVVKG-P 56 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 57 KGLQAANVRKV 67 >gi|319653292|ref|ZP_08007394.1| cold shock protein [Bacillus sp. 2_A_57_CT2] gi|317395213|gb|EFV75949.1| cold shock protein [Bacillus sp. 2_A_57_CT2] Length = 66 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ S G +L EGQ V+++ V+ A Sbjct: 1 MKNGKVKWFNAEKGFGFIE----GEDGNDVFVHYSAIQSEGFKSLEEGQEVSFEVVEG-A 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAANVTKL 66 >gi|222082689|ref|YP_002542054.1| cold shock protein [Agrobacterium radiobacter K84] gi|221727368|gb|ACM30457.1| cold shock protein [Agrobacterium radiobacter K84] Length = 74 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFI P+ + G D F+H SAV AG+ + EGQ + Y+ +++ Sbjct: 5 IMTTGTVKWFNSTKGFGFIQPD---DGGADAFVHISAVERAGMREIVEGQKIAYELERDN 61 Query: 61 ANGKYSAENLK 71 +GK SA NL+ Sbjct: 62 KSGKLSACNLQ 72 >gi|56695352|ref|YP_165700.1| cold shock family protein [Ruegeria pomeroyi DSS-3] gi|56677089|gb|AAV93755.1| cold shock family protein [Ruegeria pomeroyi DSS-3] Length = 68 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE E G DVF+H SAV +GL L + Q V+Y+ + Sbjct: 1 MATGTVKWFNTTKGFGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYEL-KPGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA +LKL+ Sbjct: 57 DGRESAVDLKLL 68 >gi|91776492|ref|YP_546248.1| cold-shock DNA-binding protein family protein [Methylobacillus flagellatus KT] gi|91710479|gb|ABE50407.1| cold-shock DNA-binding protein family [Methylobacillus flagellatus KT] Length = 67 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H SA+ AG +L EGQ V++D + Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVEAGYKSLKEGQRVSFDVTEGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|158312417|ref|YP_001504925.1| cold-shock DNA-binding domain-containing protein [Frankia sp. EAN1pec] gi|158107822|gb|ABW10019.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec] Length = 67 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI +G G DVF+H SA+ SAG +L E Q V +D Q Sbjct: 1 MAQGTVKWFNGEKGFGFIAQDG---GGPDVFVHYSAIDSAGFRSLDENQRVEFDVTQGQK 57 Query: 62 NGKYSAENLKLV 73 AE+++ V Sbjct: 58 G--PQAEHVRPV 67 >gi|289628626|ref|ZP_06461580.1| cold-shock protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651512|ref|ZP_06482855.1| cold-shock protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330868605|gb|EGH03314.1| cold-shock protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 202 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 135 TGTVKWFNASKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 190 LQAEDVIAALPR 201 >gi|239636591|ref|ZP_04677593.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239637686|ref|ZP_04678656.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239596711|gb|EEQ79238.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239597946|gb|EEQ80441.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|330684330|gb|EGG96063.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121] gi|330684668|gb|EGG96370.1| major cold shock protein CspA [Staphylococcus epidermidis VCU121] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E G DVF+H SA+A G +L EGQ V +D V+ D Sbjct: 1 MNNGTVKWFNSEKGFGFIERE----DGSDVFVHFSAIAEEGYKSLEEGQKVEFDIVEGD- 55 Query: 62 NGKYSAENLKL 72 G+ +A +K+ Sbjct: 56 RGEQAANVVKM 66 >gi|156934624|ref|YP_001438540.1| hypothetical protein ESA_02458 [Cronobacter sakazakii ATCC BAA-894] gi|156532878|gb|ABU77704.1| hypothetical protein ESA_02458 [Cronobacter sakazakii ATCC BAA-894] Length = 76 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQVVRFDVHQG-P 56 Query: 62 NGKYSAENLKLVPKSSN 78 G +++ + L ++++ Sbjct: 57 KGNHASVIVPLEAEAAS 73 >gi|146337756|ref|YP_001202804.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278] gi|146190562|emb|CAL74564.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278] Length = 68 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI P + G+DVF+H SAV AGL L EGQ + YD + G Sbjct: 2 QGTVKWFNGQKGFGFIQP---QDGGNDVFVHISAVERAGLAGLAEGQKLNYDVKTDKMRG 58 Query: 64 KYSAENLKLV 73 K SAENL L+ Sbjct: 59 KTSAENLSLI 68 >gi|328957137|ref|YP_004374523.1| cold shock protein CspA [Carnobacterium sp. 17-4] gi|328673461|gb|AEB29507.1| cold shock protein CspA [Carnobacterium sp. 17-4] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V ++ V+ + Sbjct: 1 MEKGTVKWFNAEKGFGFIEVE----GGEDVFVHFSAITGDGFKSLEEGQAVEFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGAQAANVVKL 66 >gi|289643269|ref|ZP_06475394.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] gi|289506909|gb|EFD27883.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ +G G DVF+H SA+ G +L EGQ V + Q Sbjct: 1 MAQGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIDMDGYKSLEEGQRVEFQVTQGQK 57 Query: 62 NGKYSAENLKLV 73 A+ +++V Sbjct: 58 G--PQADAVRVV 67 >gi|253995969|ref|YP_003048033.1| cold-shock DNA-binding domain-containing protein [Methylotenera mobilis JLW8] gi|253982648|gb|ACT47506.1| cold-shock DNA-binding domain protein [Methylotenera mobilis JLW8] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H SA+ +G +L EGQ V++D + Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVESGYKSLKEGQRVSFDLTEGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|95928508|ref|ZP_01311255.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] gi|95135298|gb|EAT16950.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +GS+KW+N KG+GFI + G DVF+H SA+ G +L EG V ++ + Sbjct: 1 MAQGSVKWFNDAKGFGFIEQD----GGPDVFVHFSAIQGDGFKSLAEGDRVEFEIT-DGQ 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 KGPQAANVIKL 66 >gi|304406586|ref|ZP_07388242.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] gi|304344644|gb|EFM10482.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G DVF+H SA+ G L EGQ V ++ VQ + Sbjct: 1 MQQGTVKWFNAEKGFGFIEVE----GGSDVFVHFSAIQGEGFKTLDEGQRVEFNVVQGN- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQAENVVKL 66 >gi|71908706|ref|YP_286293.1| cold-shock DNA-binding protein family protein [Dechloromonas aromatica RCB] gi|71848327|gb|AAZ47823.1| cold-shock DNA-binding protein family [Dechloromonas aromatica RCB] Length = 72 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + +D+F H SA+ G L EGQ V++D VQ Sbjct: 6 MAIGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMNGFKTLKEGQKVSFDVVQGPK 62 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 63 G--KQASNIQ 70 >gi|16077579|ref|NP_388393.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|221308339|ref|ZP_03590186.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|221312661|ref|ZP_03594466.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317584|ref|ZP_03598878.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221321860|ref|ZP_03603154.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. SMY] gi|321314161|ref|YP_004206448.1| cold-shock protein [Bacillus subtilis BSn5] gi|729220|sp|P39158|CSPC_BACSU RecName: Full=Cold shock protein CspC gi|1230546|dbj|BAA04956.1| cold shock protein [Bacillus subtilis] gi|1881321|dbj|BAA19348.1| COLD SHOCK PROTEIN [Bacillus subtilis] gi|2393787|gb|AAC45646.1| cold shock protein C [Bacillus subtilis] gi|2632812|emb|CAB12319.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|291482931|dbj|BAI84006.1| cold-shock protein [Bacillus subtilis subsp. natto BEST195] gi|320020435|gb|ADV95421.1| cold-shock protein [Bacillus subtilis BSn5] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E +GDDVF+H SA+ S G +L EGQ V++D Q A Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSDGFKSLDEGQKVSFDVEQG-A 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGAQAANVQK 65 >gi|300722306|ref|YP_003711591.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus nematophila ATCC 19061] gi|297628808|emb|CBJ89386.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus nematophila ATCC 19061] Length = 69 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S+G L EGQ V ++ + D G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIKSSGFKTLAEGQKVEFEITEGD-KG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVVAI 69 >gi|302829474|ref|XP_002946304.1| nucleic acid binding protein [Volvox carteri f. nagariensis] gi|121077603|gb|ABM47305.1| nucleic acid binding protein [Volvox carteri f. nagariensis] gi|300269119|gb|EFJ53299.1| nucleic acid binding protein [Volvox carteri f. nagariensis] Length = 242 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + RG++KW+N KG+GFITPEG G+D F+H++ + S G +L EG+ V ++ V+ Sbjct: 5 LRQRGTVKWFNATKGFGFITPEG---GGEDFFVHQTNINSDGFRSLREGEAVEFE-VEAG 60 Query: 61 ANGKYSAENLK 71 +G+ A ++ Sbjct: 61 PDGRSKAVSVS 71 >gi|320527168|ref|ZP_08028355.1| major cold shock protein CspA [Solobacterium moorei F0204] gi|320132496|gb|EFW25039.1| major cold shock protein CspA [Solobacterium moorei F0204] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFIT T+ G DVF+H SA+ S G L EG V++D +++ Sbjct: 1 MATGKVKWFNAEKGYGFIT----TDEGKDVFVHYSAIQSEGFKTLDEGAAVSFDITESN- 55 Query: 62 NGKYSAENLKL 72 G ++ KL Sbjct: 56 RGPQASNVTKL 66 >gi|315649820|ref|ZP_07902903.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|315274794|gb|EFU38175.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] Length = 65 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI TE G DVF+H SA+ S G L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFNAEKGYGFIE----TEDGGDVFVHFSAIQSEGFKTLEEGQSVEFEIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +K+ Sbjct: 57 PQAANVIKI 65 >gi|237746974|ref|ZP_04577454.1| cold-shock DNA-binding family protein [Oxalobacter formigenes HOxBLS] gi|229378325|gb|EEO28416.1| cold-shock DNA-binding family protein [Oxalobacter formigenes HOxBLS] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITPE + G+D+F H SA+ +G L EGQ V ++ Q Sbjct: 1 MATGTVKWFNDSKGFGFITPE---DGGEDLFAHFSAINMSGFKTLKEGQKVQFEVTQGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 58 G--KQASNIQSV 67 >gi|319786935|ref|YP_004146410.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317465447|gb|ADV27179.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 68 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+PE + DVF H SA+ + G +L EGQ V+Y+ Q Sbjct: 1 MANGTVKWFNDAKGFGFISPE---DGSADVFAHFSAINAKGFRSLREGQRVSYEVTQGPK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--AQASNITPL 67 >gi|296127882|ref|YP_003635132.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] gi|296019697|gb|ADG72933.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P ++ DVF H SA+AS+G L E Q V ++ Q Sbjct: 1 MATGTVKWFNAEKGFGFIAP---SDGSADVFAHYSAIASSGFRTLEENQQVEFEVTQGPK 57 Query: 62 NGKYSAENLKLV 73 A +++ + Sbjct: 58 G--LQASDIRPL 67 >gi|253998300|ref|YP_003050363.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. SIP3-4] gi|255599837|ref|XP_002537322.1| cold shock domain containing proteins, putative [Ricinus communis] gi|313200374|ref|YP_004039032.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. MP688] gi|223516741|gb|EEF25061.1| cold shock domain containing proteins, putative [Ricinus communis] gi|253984979|gb|ACT49836.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4] gi|312439690|gb|ADQ83796.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H SA+ +G +L EGQ V++D + Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVESGYKSLKEGQRVSFDVTEGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|152977181|ref|YP_001376698.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025933|gb|ABS23703.1| putative cold-shock DNA-binding domain protein [Bacillus cytotoxicus NVH 391-98] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E GDDVF+H SA+ S G L EGQ V+++ V+ + Sbjct: 1 MQTGKVKWFNSEKGFGFIEVE----GGDDVFVHFSAIQSEGFKTLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|238790450|ref|ZP_04634220.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641] gi|238721476|gb|EEQ13146.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641] Length = 69 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ A G Sbjct: 5 KGSVKWFNEAKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFEIT-TGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|56962604|ref|YP_174330.1| cold shock protein CspC [Bacillus clausii KSM-K16] gi|56908842|dbj|BAD63369.1| cold shock protein CspC [Bacillus clausii KSM-K16] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ V++D Q A Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----DGDDVFVHFSAIQSEGFKSLDEGQKVSFDIEQG-A 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGAQAANVQK 65 >gi|330965607|gb|EGH65867.1| cold shock domain family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 94 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G + +D+F H SA+ G L GQ V++D +Q Sbjct: 3 MLNGKVKWFNNAKGYGFILEDGKPD--EDLFAHFSAIQMDGYKTLKAGQPVSFDIIQGPK 60 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 61 G--LHAVNIQ 68 >gi|291615324|ref|YP_003525481.1| cold-shock DNA-binding domain protein [Sideroxydans lithotrophicus ES-1] gi|291585436|gb|ADE13094.1| cold-shock DNA-binding domain protein [Sideroxydans lithotrophicus ES-1] Length = 68 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP + GDD+F H SA+ S+G LTEGQ V++D Sbjct: 1 MATGTVKWFNDSKGFGFITP---SNGGDDLFAHFSAIQSSGFKTLTEGQQVSFDITAGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--QQASNIR 65 >gi|253573284|ref|ZP_04850627.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846812|gb|EES74817.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 65 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI E G+DVF+H SA+ G L EGQ V ++ + G Sbjct: 2 KGTVKWFNAEKGYGFIQVE----GGEDVFVHFSAIQGEGFKTLEEGQAVEFEIT-DGNRG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|146340323|ref|YP_001205371.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278] gi|146193129|emb|CAL77140.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278] Length = 69 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++GS+KW+NP KGYGFI P G DVF+H SAV AGL L E Q + YD V++ Sbjct: 4 YKGSVKWFNPTKGYGFIKPTGGD---KDVFVHISAVERAGLTTLNENQAIEYDLVES--R 58 Query: 63 GKYSAENLKL 72 GK SAENLKL Sbjct: 59 GKTSAENLKL 68 >gi|311895414|dbj|BAJ27822.1| putative cold shock protein [Kitasatospora setae KM-6054] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI +G G DVF H S + S G L EGQ V +D Q Sbjct: 1 MATGTVKWFNSEKGYGFIEQDG---GGADVFAHYSNIQSTGFRELIEGQKVEFDVTQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPI 67 >gi|229102298|ref|ZP_04233007.1| Cold shock-like protein cspB [Bacillus cereus Rock3-28] gi|228681199|gb|EEL35367.1| Cold shock-like protein cspB [Bacillus cereus Rock3-28] Length = 77 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI +G+ DDVF+H SA+ G L EGQ V++D + + G Sbjct: 14 QGKVKWFNNEKGFGFIEMDGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 68 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 69 PQAANVVKL 77 >gi|85704998|ref|ZP_01036098.1| cold shock family protein [Roseovarius sp. 217] gi|149202366|ref|ZP_01879339.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035] gi|85670320|gb|EAQ25181.1| cold shock family protein [Roseovarius sp. 217] gi|149144464|gb|EDM32495.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035] Length = 68 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+G G DVF+H SAV +GL L + Q V ++ Q Sbjct: 1 MPTGTVKWFNTTKGYGFIAPDG---GGKDVFVHISAVERSGLTGLADNQKVGFEL-QEGR 56 Query: 62 NGKYSAENLKLV 73 +G+ A +L+L+ Sbjct: 57 DGRQMASDLRLL 68 >gi|333027864|ref|ZP_08455928.1| putative cold shock protein [Streptomyces sp. Tu6071] gi|332747716|gb|EGJ78157.1| putative cold shock protein [Streptomyces sp. Tu6071] Length = 86 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +AS+G L EGQ V +D Q Sbjct: 19 MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIASSGFRELIEGQKVEFDVTQGQK 75 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 76 G--LQAENIT 83 >gi|269125062|ref|YP_003298432.1| cold-shock DNA-binding domain-containing protein [Thermomonospora curvata DSM 43183] gi|268310020|gb|ACY96394.1| cold-shock DNA-binding domain protein [Thermomonospora curvata DSM 43183] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L +GQ V ++ ++ Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGRDVFVHYSAILMDGYRTLEQGQRVEFEIAHSER 56 Query: 62 NGKYSAENLKLV 73 AE+++ + Sbjct: 57 G--PQAESVRTL 66 >gi|225181189|ref|ZP_03734635.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168158|gb|EEG76963.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI GDDVF+H SA+ S G L EGQ V ++ V+ + Sbjct: 2 QGKVKWFNAEKGFGFIE----RSDGDDVFVHFSAIQSEGFKTLEEGQTVEFEVVEGNRG- 56 Query: 64 KYSAENLKLVP 74 A N+ +VP Sbjct: 57 -LQAANVTVVP 66 >gi|226944903|ref|YP_002799976.1| cold shock protein, CspD [Azotobacter vinelandii DJ] gi|226719830|gb|ACO79001.1| cold shock protein, CspD [Azotobacter vinelandii DJ] Length = 92 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G E D+F H SA+ G L GQ VT++ +Q Sbjct: 1 MLSGKVKWFNNAKGYGFIVADGRDE---DLFAHYSAIQMDGYKTLKAGQAVTFELLQGPK 57 Query: 62 NGKYSAENLKLVP 74 A N+ P Sbjct: 58 G--LHAINIHPCP 68 >gi|259502488|ref|ZP_05745390.1| cold-shock domain family protein [Lactobacillus antri DSM 16041] gi|259169631|gb|EEW54126.1| cold-shock domain family protein [Lactobacillus antri DSM 16041] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKGYGFI+ E SGDDVF+H SA+ G +L EGQ VT+D + D Sbjct: 1 MEQGTVKWFNNDKGYGFISRE----SGDDVFVHFSAIQGEGFKSLDEGQKVTFDVEEGD- 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGLQAVNVVK 65 >gi|134098028|ref|YP_001103689.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291007208|ref|ZP_06565181.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|133910651|emb|CAM00764.1| cold-shock DNA-binding domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+G G DVF+H SA+ G L E Q VT++ Q Sbjct: 1 MAQGTVKWFNSEKGFGFIAPDG---GGADVFVHYSAIEGNGFRTLEENQTVTFEITQGQK 57 Query: 62 NGKYSAENLKLV 73 A +++V Sbjct: 58 G--PQASGVRVV 67 >gi|15595653|ref|NP_249147.1| cold-shock protein [Pseudomonas aeruginosa PAO1] gi|107099440|ref|ZP_01363358.1| hypothetical protein PaerPA_01000452 [Pseudomonas aeruginosa PACS2] gi|116054185|ref|YP_788629.1| putative cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14] gi|152984051|ref|YP_001345954.1| putative cold-shock protein [Pseudomonas aeruginosa PA7] gi|218889196|ref|YP_002438060.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58] gi|254237314|ref|ZP_04930637.1| hypothetical protein PACG_03384 [Pseudomonas aeruginosa C3719] gi|254243552|ref|ZP_04936874.1| hypothetical protein PA2G_04371 [Pseudomonas aeruginosa 2192] gi|296386954|ref|ZP_06876453.1| putative cold-shock protein [Pseudomonas aeruginosa PAb1] gi|313111918|ref|ZP_07797708.1| putative major cold shock protein [Pseudomonas aeruginosa 39016] gi|9946316|gb|AAG03845.1|AE004483_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1] gi|115589406|gb|ABJ15421.1| putative major cold shock protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126169245|gb|EAZ54756.1| hypothetical protein PACG_03384 [Pseudomonas aeruginosa C3719] gi|126196930|gb|EAZ60993.1| hypothetical protein PA2G_04371 [Pseudomonas aeruginosa 2192] gi|150959209|gb|ABR81234.1| probable cold-shock protein [Pseudomonas aeruginosa PA7] gi|218769419|emb|CAW25179.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58] gi|310884210|gb|EFQ42804.1| putative major cold shock protein [Pseudomonas aeruginosa 39016] Length = 69 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFITPE SG DVF+H A+ G L EGQ V+++ VQ Sbjct: 3 RQNGTVKWFNETKGYGFITPE----SGPDVFVHFRAIEGNGFKTLAEGQKVSFEVVQGQK 58 Query: 62 NGKYSAENLKLV 73 AE ++++ Sbjct: 59 G--MQAERVQVI 68 >gi|251798553|ref|YP_003013284.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] gi|247546179|gb|ACT03198.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E +GDDVF+H SA+ S G +L EGQ V ++ V+ Sbjct: 1 METGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSEGFKSLDEGQRVEFNVVKGQ- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQAENVVKL 66 >gi|188586832|ref|YP_001918377.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351519|gb|ACB85789.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 65 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N D+GYGFI + GDDVF+H SA+ G L +GQ V ++ V+ G Sbjct: 2 QGKVKWFNADRGYGFIERD----GGDDVFVHYSAIQEEGFKTLEDGQDVEFEIVEG-PRG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|167745412|ref|ZP_02417539.1| hypothetical protein ANACAC_00103 [Anaerostipes caccae DSM 14662] gi|317473040|ref|ZP_07932340.1| cold-shock DNA-binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167655133|gb|EDR99262.1| hypothetical protein ANACAC_00103 [Anaerostipes caccae DSM 14662] gi|316899469|gb|EFV21483.1| cold-shock DNA-binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KGYGFI+ E GDDVF+H SA++ G L EGQ V+++ + Sbjct: 1 MNTGTVKWFNSEKGYGFISQE----GGDDVFVHFSAISGDGFKTLEEGQQVSFEIAEGPR 56 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 57 G--KQAENVSKL 66 >gi|291613435|ref|YP_003523592.1| cold-shock DNA-binding domain protein [Sideroxydans lithotrophicus ES-1] gi|291583547|gb|ADE11205.1| cold-shock DNA-binding domain protein [Sideroxydans lithotrophicus ES-1] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + +D+F H SA+ +G +L EGQ VT++ VQ Sbjct: 1 MANGTVKWFNDAKGFGFITPD---DGSEDLFAHFSAINMSGFKSLKEGQKVTFEVVQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|229544073|ref|ZP_04433132.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] gi|229325212|gb|EEN90888.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V++D + + Sbjct: 1 MEQGKVKWFNSEKGYGFIERE----GGSDVFVHFSAIQGEGFKTLEEGQSVSFDIEEGN- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAANVSKL 66 >gi|188025725|ref|ZP_02959593.2| hypothetical protein PROSTU_01464 [Providencia stuartii ATCC 25827] gi|188020258|gb|EDU58298.1| hypothetical protein PROSTU_01464 [Providencia stuartii ATCC 25827] Length = 81 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ + A G Sbjct: 17 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIASEGFKTLAEGQKVEFEITEG-AKG 72 Query: 64 KYSAENLKL 72 + + L Sbjct: 73 PSAVNVVSL 81 >gi|119476170|ref|ZP_01616522.1| CspA-like protein [marine gamma proteobacterium HTCC2143] gi|119450797|gb|EAW32031.1| CspA-like protein [marine gamma proteobacterium HTCC2143] Length = 91 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 5/77 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G DVF H S ++ G L GQ V++D V N Sbjct: 1 MQTGTVKWFNNAKGFGFILPEG---GGADVFAHYSTISMDGYKTLKAGQPVSFDTV-NGP 56 Query: 62 NGKYSAENLKLVPKSSN 78 G + A N++ S++ Sbjct: 57 KGLH-ATNIQAAQDSAD 72 >gi|54301716|ref|YP_131709.1| putative cold shock-like protein [Photobacterium profundum SS9] gi|46915136|emb|CAG21909.1| putative Cold shock-like protein [Photobacterium profundum SS9] Length = 79 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFIT + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 15 TGLVKWFNEDKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 70 Query: 64 KYSAENLKL 72 +A + L Sbjct: 71 PQAANVVAL 79 >gi|217969795|ref|YP_002355029.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] gi|217507122|gb|ACK54133.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITPE GDD+F H SA+ G L EGQ VT+D Sbjct: 1 MANGTVKWFNDSKGFGFITPEA---GGDDLFAHFSAIQGQGFKTLAEGQRVTFDVTTGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--LQASNIR 65 >gi|116493183|ref|YP_804918.1| cold-shock DNA-binding protein family protein [Pediococcus pentosaceus ATCC 25745] gi|116103333|gb|ABJ68476.1| cold-shock DNA-binding protein family [Pediococcus pentosaceus ATCC 25745] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFIT E G DVF+H SA+ G L EGQ V++D ++D Sbjct: 1 MEQGTVKWFNADKGFGFITRE----DGSDVFVHFSAIQGDGFKTLEEGQAVSFDVEESDR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--PQAVNV 63 >gi|304408316|ref|ZP_07389964.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] gi|304342785|gb|EFM08631.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G DVF+H SA+ G L EGQ V + Q + Sbjct: 1 MQQGTVKWFNAEKGFGFIEVE----GGSDVFVHFSAIQGDGFKTLDEGQRVEFTIAQGN- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQAENVVKL 66 >gi|302557416|ref|ZP_07309758.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302475034|gb|EFL38127.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H SA+ + G L EGQ VT+D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINATGFRELQEGQAVTFDVTQGQK 57 Query: 62 NGKYSAENLKL 72 AEN+ L Sbjct: 58 G--PQAENINL 66 >gi|302870196|ref|YP_003838833.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029] gi|315503526|ref|YP_004082413.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|330470396|ref|YP_004408139.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] gi|302573055|gb|ADL49257.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC 27029] gi|315410145|gb|ADU08262.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|328813367|gb|AEB47539.1| cold-shock DNA-binding domain protein [Verrucosispora maris AB-18-032] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L +GQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGQDVFVHFSAIEMDGYKALDDGQRVEFEIAQGQK 56 Query: 62 NGKYSAENLKLV 73 AE ++++ Sbjct: 57 G--PQAERVRVI 66 >gi|254464633|ref|ZP_05078044.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] gi|206685541|gb|EDZ46023.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] Length = 68 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G DVF+H SAV +GL L + Q VT+D + Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVTFDI-EAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL+L Sbjct: 57 DGRESAVNLQL 67 >gi|312870567|ref|ZP_07730683.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3] gi|311093907|gb|EFQ52235.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKGYGFI+ E SGDDVF+H SA+ G +L EGQ V++D + D Sbjct: 1 MEQGTVKWFNNDKGYGFISRE----SGDDVFVHFSAIQGEGFKSLDEGQKVSFDVEEGD- 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGLQAVNVVK 65 >gi|153006954|ref|YP_001381279.1| cold-shock DNA-binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152030527|gb|ABS28295.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +G G+DVF H +A+ + G L EGQ V +D VQ Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQTQGFRTLAEGQKVEFD-VQRGP 56 Query: 62 NGKYSAEN 69 G +A Sbjct: 57 KGLQAANV 64 >gi|86738977|ref|YP_479377.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3] gi|111220090|ref|YP_710884.1| cold-shock protein [Frankia alni ACN14a] gi|158318310|ref|YP_001510818.1| cold-shock DNA-binding domain-containing protein [Frankia sp. EAN1pec] gi|86565839|gb|ABD09648.1| cold-shock DNA-binding protein family [Frankia sp. CcI3] gi|111147622|emb|CAJ59277.1| Cold-shock protein; nucleic acid-binding domain [Frankia alni ACN14a] gi|158113715|gb|ABW15912.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ +G G DVF+H SA+ G L EGQ V + Q Sbjct: 1 MAQGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIQMDGYKALEEGQRVEFQVTQGQK 57 Query: 62 NGKYSAENLKLV 73 A+ +++V Sbjct: 58 G--PQADAVRVV 67 >gi|253688097|ref|YP_003017287.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754675|gb|ACT12751.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 73 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|16800469|ref|NP_470737.1| hypothetical protein lin1401 [Listeria innocua Clip11262] gi|16803404|ref|NP_464889.1| hypothetical protein lmo1364 [Listeria monocytogenes EGD-e] gi|46907590|ref|YP_013979.1| cold-shock domain-contain protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093751|ref|ZP_00231501.1| cold-shock domain family protein [Listeria monocytogenes str. 4b H7858] gi|47095947|ref|ZP_00233550.1| cold-shock domain family protein [Listeria monocytogenes str. 1/2a F6854] gi|116872795|ref|YP_849576.1| cold shock protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217964490|ref|YP_002350168.1| hypothetical protein LMHCC_1207 [Listeria monocytogenes HCC23] gi|224499943|ref|ZP_03668292.1| hypothetical protein LmonF1_09789 [Listeria monocytogenes Finland 1988] gi|224501693|ref|ZP_03670000.1| hypothetical protein LmonFR_04122 [Listeria monocytogenes FSL R2-561] gi|254824577|ref|ZP_05229578.1| cold-shock domain-containing protein [Listeria monocytogenes FSL J1-194] gi|254827625|ref|ZP_05232312.1| cspL [Listeria monocytogenes FSL N3-165] gi|254829879|ref|ZP_05234534.1| cold shock protein [Listeria monocytogenes 10403S] gi|254852588|ref|ZP_05241936.1| cspL [Listeria monocytogenes FSL R2-503] gi|254898471|ref|ZP_05258395.1| cold shock protein [Listeria monocytogenes J0161] gi|254912038|ref|ZP_05262050.1| CspA protein [Listeria monocytogenes J2818] gi|254932321|ref|ZP_05265680.1| cspL [Listeria monocytogenes HPB2262] gi|254936365|ref|ZP_05268062.1| cspL [Listeria monocytogenes F6900] gi|255027593|ref|ZP_05299579.1| cold shock protein [Listeria monocytogenes FSL J2-003] gi|255521546|ref|ZP_05388783.1| cold shock protein [Listeria monocytogenes FSL J1-175] gi|284801749|ref|YP_003413614.1| hypothetical protein LM5578_1503 [Listeria monocytogenes 08-5578] gi|284994891|ref|YP_003416659.1| hypothetical protein LM5923_1456 [Listeria monocytogenes 08-5923] gi|290893527|ref|ZP_06556510.1| cold shock-like protein cspLA [Listeria monocytogenes FSL J2-071] gi|300765396|ref|ZP_07075378.1| cold-shock domain family protein [Listeria monocytogenes FSL N1-017] gi|315303031|ref|ZP_07873741.1| conserved domain protein [Listeria ivanovii FSL F6-596] gi|61221523|sp|P0A355|CSPA_LISMO RecName: Full=Cold shock-like protein CspLA; Short=CspL gi|61221525|sp|P0A356|CSPA_LISIN RecName: Full=Cold shock-like protein CspLA; Short=CspL gi|12054787|emb|CAC20630.1| cold shock protein L [Listeria monocytogenes] gi|16410780|emb|CAC99442.1| cspL [Listeria monocytogenes EGD-e] gi|16413874|emb|CAC96632.1| cspL [Listeria innocua Clip11262] gi|46880858|gb|AAT04156.1| cold-shock domain family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47015693|gb|EAL06623.1| cold-shock domain family protein [Listeria monocytogenes str. 1/2a F6854] gi|47017872|gb|EAL08655.1| cold-shock domain family protein [Listeria monocytogenes str. 4b H7858] gi|116741673|emb|CAK20797.1| cold shock protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217333760|gb|ACK39554.1| conserved domain protein [Listeria monocytogenes HCC23] gi|258600003|gb|EEW13328.1| cspL [Listeria monocytogenes FSL N3-165] gi|258605901|gb|EEW18509.1| cspL [Listeria monocytogenes FSL R2-503] gi|258608956|gb|EEW21564.1| cspL [Listeria monocytogenes F6900] gi|284057311|gb|ADB68252.1| hypothetical protein LM5578_1503 [Listeria monocytogenes 08-5578] gi|284060358|gb|ADB71297.1| hypothetical protein LM5923_1456 [Listeria monocytogenes 08-5923] gi|290556872|gb|EFD90403.1| cold shock-like protein cspLA [Listeria monocytogenes FSL J2-071] gi|293583877|gb|EFF95909.1| cspL [Listeria monocytogenes HPB2262] gi|293590004|gb|EFF98338.1| CspA protein [Listeria monocytogenes J2818] gi|293593815|gb|EFG01576.1| cold-shock domain-containing protein [Listeria monocytogenes FSL J1-194] gi|300513833|gb|EFK40898.1| cold-shock domain family protein [Listeria monocytogenes FSL N1-017] gi|307570946|emb|CAR84125.1| cold-shock family protein [Listeria monocytogenes L99] gi|313619068|gb|EFR90876.1| conserved domain protein [Listeria innocua FSL S4-378] gi|313623888|gb|EFR94003.1| conserved domain protein [Listeria innocua FSL J1-023] gi|313628598|gb|EFR97021.1| conserved domain protein [Listeria ivanovii FSL F6-596] gi|328467502|gb|EGF38571.1| cold shock protein [Listeria monocytogenes 1816] gi|328475078|gb|EGF45866.1| cold shock protein [Listeria monocytogenes 220] gi|332311805|gb|EGJ24900.1| Cold shock-like protein CspLA [Listeria monocytogenes str. Scott A] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E +GDDVF+H SA+ G +L EGQ VT+D V+ Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQGDGFKSLDEGQAVTFD-VEEGQ 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|323489356|ref|ZP_08094586.1| cold shock protein [Planococcus donghaensis MPA1U2] gi|323396997|gb|EGA89813.1| cold shock protein [Planococcus donghaensis MPA1U2] Length = 69 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFI GDDVF+H + + G LTEG+ V++D + + Sbjct: 1 MNQGTVKWFNSEKGYGFIE----YNDGDDVFVHFTGIQGDGFRTLTEGKTVSFDII-DGN 55 Query: 62 NGKYSAENLKLVPK 75 G +A +++ P+ Sbjct: 56 RGPQAANVIEVDPE 69 >gi|254487779|ref|ZP_05100984.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp. GAI101] gi|214044648|gb|EEB85286.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp. GAI101] Length = 68 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+G G D+F+H SAV AGL L + Q VT+D + Sbjct: 1 MATGTVKWFNTTKGYGFIAPDG---GGKDIFVHISAVERAGLTGLADNQKVTFDI-EAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N+ L Sbjct: 57 DGRESAGNIAL 67 >gi|227112016|ref|ZP_03825672.1| cold shock-like protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 73 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|16759589|ref|NP_455206.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764006|ref|NP_459621.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142638|ref|NP_805980.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414236|ref|YP_151311.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|146310817|ref|YP_001175891.1| cold shock protein CspE [Enterobacter sp. 638] gi|161615160|ref|YP_001589125.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|162139604|ref|YP_215645.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167990632|ref|ZP_02571732.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|194444501|ref|YP_002039870.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448211|ref|YP_002044662.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472567|ref|ZP_03078551.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735055|ref|YP_002113746.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195873911|ref|ZP_02699682.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197251616|ref|YP_002145603.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262485|ref|ZP_03162559.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197300846|ref|ZP_02661676.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197363159|ref|YP_002142796.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244715|ref|YP_002214617.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390458|ref|ZP_03217069.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930521|ref|ZP_03221451.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351917|ref|YP_002225718.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205357082|ref|ZP_02344593.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205358472|ref|ZP_02656696.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205358940|ref|ZP_02665405.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205359626|ref|ZP_02830749.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205360370|ref|ZP_02682831.2| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|213053415|ref|ZP_03346293.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425108|ref|ZP_03357858.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580429|ref|ZP_03362255.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648627|ref|ZP_03378680.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857366|ref|ZP_03384337.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582464|ref|YP_002636262.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911579|ref|ZP_04655416.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289809995|ref|ZP_06540624.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|311280471|ref|YP_003942702.1| cold-shock DNA-binding domain-containing protein [Enterobacter cloacae SCF1] gi|25296131|pir||AH0579 cold shock-like protein cspE [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419141|gb|AAL19580.1| RNA chaperone, negative regulator of cspA transcription [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501881|emb|CAD05106.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Typhi] gi|29138269|gb|AAO69840.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128493|gb|AAV77999.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|145317693|gb|ABP59840.1| cold shock protein E (CspE) [Enterobacter sp. 638] gi|161364524|gb|ABX68292.1| hypothetical protein SPAB_02928 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403164|gb|ACF63386.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406515|gb|ACF66734.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458931|gb|EDX47770.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710557|gb|ACF89778.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631943|gb|EDX50463.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094636|emb|CAR60158.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197215319|gb|ACH52716.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240740|gb|EDY23360.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290243|gb|EDY29599.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939231|gb|ACH76564.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602903|gb|EDZ01449.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320455|gb|EDZ05658.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271698|emb|CAR36529.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324288|gb|EDZ12127.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330839|gb|EDZ17603.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334064|gb|EDZ20828.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340419|gb|EDZ27183.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344148|gb|EDZ30912.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349743|gb|EDZ36374.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224466991|gb|ACN44821.1| cold shock protein E [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245902|emb|CBG23703.1| cold shock-like protein cspE [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992359|gb|ACY87244.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|308749666|gb|ADO49418.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1] gi|312911660|dbj|BAJ35634.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084898|emb|CBY94688.1| Cold shock-like protein cspE CSP-E [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226208|gb|EFX51259.1| Cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613239|gb|EFY10182.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621307|gb|EFY18164.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623727|gb|EFY20565.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628999|gb|EFY25778.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631721|gb|EFY28475.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637543|gb|EFY34245.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641883|gb|EFY38513.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646727|gb|EFY43233.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651428|gb|EFY47808.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653121|gb|EFY49455.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658841|gb|EFY55096.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664889|gb|EFY61082.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668891|gb|EFY65043.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670603|gb|EFY66736.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675344|gb|EFY71420.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682185|gb|EFY78210.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684985|gb|EFY80982.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713693|gb|EFZ05264.1| RNA chaperone, negative regulator of cspA transcription [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128946|gb|ADX16376.1| cold shock-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193956|gb|EFZ79158.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197952|gb|EFZ83074.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202001|gb|EFZ87061.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207134|gb|EFZ92087.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210399|gb|EFZ95290.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214339|gb|EFZ99090.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221490|gb|EGA05904.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225534|gb|EGA09764.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231092|gb|EGA15208.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234076|gb|EGA18165.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238229|gb|EGA22287.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242537|gb|EGA26561.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248486|gb|EGA32420.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251298|gb|EGA35170.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259226|gb|EGA42869.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261634|gb|EGA45209.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264816|gb|EGA48317.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272347|gb|EGA55754.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622372|gb|EGE28717.1| RNA chaperone, negative regulator of cspA transcription [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626956|gb|EGE33299.1| cold shock-like protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987574|gb|AEF06557.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 69 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ N A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT-NGAKG 60 Query: 64 KYSAENLKL 72 +A L Sbjct: 61 PSAANVTAL 69 >gi|225848261|ref|YP_002728424.1| hypothetical protein SULAZ_0432 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644220|gb|ACN99270.1| conserved domain protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 68 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW++ KG+GFIT + ++G D+F+H SA+ G NL EGQ V ++ VQ + Sbjct: 1 MKVTGTVKWFDSKKGFGFITRD---DNGQDIFVHFSAIQGRGFKNLEEGQKVEFEIVQEE 57 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 58 -KGPRAANVVKL 68 >gi|195977285|ref|YP_002122529.1| major cold-shock protein [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195973990|gb|ACG61516.1| major cold-shock protein [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ TE+G DVF H SA+ S G +L EGQ VT+D V++ Sbjct: 1 MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQSDGFRSLDEGQRVTFD-VEDGQ 55 Query: 62 NGKYSAENLKL 72 G + KL Sbjct: 56 RGPQAVNITKL 66 >gi|169828062|ref|YP_001698220.1| cold shock protein [Lysinibacillus sphaericus C3-41] gi|168992550|gb|ACA40090.1| cold shock protein [Lysinibacillus sphaericus C3-41] Length = 71 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G DVF H SA+ G +L EGQ V + ++ Sbjct: 6 MTQGTVKWFNSEKGFGFIEVE----GGQDVFAHFSAIQGEGFKSLEEGQKVEFTI-EDGQ 60 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 61 RGPQAANIVKL 71 >gi|123443227|ref|YP_001007201.1| cold shock protein CspE [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238752587|ref|ZP_04614060.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380] gi|332160847|ref|YP_004297424.1| cold shock protein CspE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122090188|emb|CAL13051.1| cold shock-like protein cspE1 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238709178|gb|EEQ01423.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380] gi|318604749|emb|CBY26247.1| cold shock protein CspE [Yersinia enterocolitica subsp. palearctica Y11] gi|325665077|gb|ADZ41721.1| cold shock protein CspE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863376|emb|CBX73498.1| cold shock-like protein cspE [Yersinia enterocolitica W22703] Length = 69 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ + A G Sbjct: 5 KGSVKWFNEAKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFEIT-SGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|30022927|ref|NP_834558.1| cold shock protein [Bacillus cereus ATCC 14579] gi|30264924|ref|NP_847301.1| cold shock protein CspD [Bacillus anthracis str. Ames] gi|42784065|ref|NP_981312.1| cold shock protein CspD [Bacillus cereus ATCC 10987] gi|47530419|ref|YP_021768.1| cold shock protein CspD [Bacillus anthracis str. 'Ames Ancestor'] gi|47568038|ref|ZP_00238744.1| cold-shock domain family protein-related protein [Bacillus cereus G9241] gi|49187745|ref|YP_030998.1| cold shock protein CspD [Bacillus anthracis str. Sterne] gi|49478797|ref|YP_038904.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140641|ref|YP_086189.1| cold shock protein [Bacillus cereus E33L] gi|65322228|ref|ZP_00395187.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012] gi|118479979|ref|YP_897130.1| cold-shock DNA-binding protein family protein [Bacillus thuringiensis str. Al Hakam] gi|165869712|ref|ZP_02214370.1| cold shock protein CspD [Bacillus anthracis str. A0488] gi|167633815|ref|ZP_02392138.1| cold shock protein CspD [Bacillus anthracis str. A0442] gi|167637994|ref|ZP_02396272.1| cold shock protein CspD [Bacillus anthracis str. A0193] gi|170685769|ref|ZP_02876992.1| cold shock protein CspD [Bacillus anthracis str. A0465] gi|170705396|ref|ZP_02895860.1| cold shock protein CspD [Bacillus anthracis str. A0389] gi|177651104|ref|ZP_02933935.1| cold shock protein CspD [Bacillus anthracis str. A0174] gi|190567127|ref|ZP_03020042.1| cold shock protein CspD [Bacillus anthracis Tsiankovskii-I] gi|196032813|ref|ZP_03100226.1| cold shock protein CspD [Bacillus cereus W] gi|196041478|ref|ZP_03108771.1| cold shock protein CspD [Bacillus cereus NVH0597-99] gi|196044044|ref|ZP_03111281.1| cold shock protein CspD [Bacillus cereus 03BB108] gi|206969776|ref|ZP_03230730.1| cold shock protein CspD [Bacillus cereus AH1134] gi|206977004|ref|ZP_03237905.1| cold shock protein CspD [Bacillus cereus H3081.97] gi|217962350|ref|YP_002340922.1| cold shock protein CspD [Bacillus cereus AH187] gi|218234055|ref|YP_002369674.1| cold shock protein CspD [Bacillus cereus B4264] gi|218906084|ref|YP_002453918.1| cold shock protein CspD [Bacillus cereus AH820] gi|222098335|ref|YP_002532392.1| cold shock protein [Bacillus cereus Q1] gi|225866859|ref|YP_002752237.1| cold shock protein CspD [Bacillus cereus 03BB102] gi|227817655|ref|YP_002817664.1| cold shock protein CspD [Bacillus anthracis str. CDC 684] gi|228917511|ref|ZP_04081060.1| Cold shock protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923616|ref|ZP_04086896.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228929909|ref|ZP_04092924.1| Cold shock protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936170|ref|ZP_04098973.1| Cold shock protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948606|ref|ZP_04110885.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228955142|ref|ZP_04117156.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961133|ref|ZP_04122759.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228988125|ref|ZP_04148224.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229048573|ref|ZP_04194133.1| Cold shock protein cspB [Bacillus cereus AH676] gi|229072368|ref|ZP_04205572.1| Cold shock protein cspB [Bacillus cereus F65185] gi|229082122|ref|ZP_04214595.1| Cold shock protein cspB [Bacillus cereus Rock4-2] gi|229087391|ref|ZP_04219530.1| Cold shock protein cspB [Bacillus cereus Rock3-44] gi|229093978|ref|ZP_04225069.1| Cold shock protein cspB [Bacillus cereus Rock3-42] gi|229112327|ref|ZP_04241866.1| Cold shock protein cspB [Bacillus cereus Rock1-15] gi|229124425|ref|ZP_04253613.1| Cold shock protein cspB [Bacillus cereus 95/8201] gi|229130142|ref|ZP_04259103.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4] gi|229141600|ref|ZP_04270132.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26] gi|229147434|ref|ZP_04275783.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|229153070|ref|ZP_04281251.1| Cold shock protein cspB [Bacillus cereus m1550] gi|229158481|ref|ZP_04286542.1| Cold shock protein cspB [Bacillus cereus ATCC 4342] gi|229181180|ref|ZP_04308512.1| Cold shock protein cspB [Bacillus cereus 172560W] gi|229187123|ref|ZP_04314271.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1] gi|229193146|ref|ZP_04320101.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|229199032|ref|ZP_04325717.1| Cold shock protein cspB [Bacillus cereus m1293] gi|229601378|ref|YP_002869129.1| cold shock protein CspD [Bacillus anthracis str. A0248] gi|254687666|ref|ZP_05151522.1| cold shock protein CspD [Bacillus anthracis str. CNEVA-9066] gi|254725230|ref|ZP_05187013.1| cold shock protein CspD [Bacillus anthracis str. A1055] gi|254736972|ref|ZP_05194678.1| cold shock protein CspD [Bacillus anthracis str. Western North America USA6153] gi|254742006|ref|ZP_05199693.1| cold shock protein CspD [Bacillus anthracis str. Kruger B] gi|254754395|ref|ZP_05206430.1| cold shock protein CspD [Bacillus anthracis str. Vollum] gi|254757227|ref|ZP_05209254.1| cold shock protein CspD [Bacillus anthracis str. Australia 94] gi|296505326|ref|YP_003667026.1| cold shock protein [Bacillus thuringiensis BMB171] gi|301056373|ref|YP_003794584.1| cold shock protein [Bacillus anthracis CI] gi|49035522|sp|Q816H3|CSPD_BACCR RecName: Full=Cold shock-like protein CspD gi|49035525|sp|Q81K90|CSPD_BACAN RecName: Full=Cold shock-like protein CspD gi|29898486|gb|AAP11759.1| Cold shock protein [Bacillus cereus ATCC 14579] gi|30259599|gb|AAP28787.1| cold shock protein CspD [Bacillus anthracis str. Ames] gi|30408066|gb|AAP30080.1| CspD [Bacillus thuringiensis] gi|42739996|gb|AAS43920.1| cold shock protein CspD [Bacillus cereus ATCC 10987] gi|47505567|gb|AAT34243.1| cold shock protein CspD [Bacillus anthracis str. 'Ames Ancestor'] gi|47555341|gb|EAL13686.1| cold-shock domain family protein-related protein [Bacillus cereus G9241] gi|49181672|gb|AAT57048.1| cold shock protein CspD [Bacillus anthracis str. Sterne] gi|49330353|gb|AAT60999.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974110|gb|AAU15660.1| cold shock protein [Bacillus cereus E33L] gi|57020677|gb|AAW32928.1| cold-shock protein D [Bacillus thuringiensis] gi|118419204|gb|ABK87623.1| cold-shock DNA-binding protein family [Bacillus thuringiensis str. Al Hakam] gi|164714541|gb|EDR20060.1| cold shock protein CspD [Bacillus anthracis str. A0488] gi|167513811|gb|EDR89179.1| cold shock protein CspD [Bacillus anthracis str. A0193] gi|167530616|gb|EDR93318.1| cold shock protein CspD [Bacillus anthracis str. A0442] gi|170129521|gb|EDS98384.1| cold shock protein CspD [Bacillus anthracis str. A0389] gi|170670233|gb|EDT20973.1| cold shock protein CspD [Bacillus anthracis str. A0465] gi|172082930|gb|EDT67992.1| cold shock protein CspD [Bacillus anthracis str. A0174] gi|190561631|gb|EDV15601.1| cold shock protein CspD [Bacillus anthracis Tsiankovskii-I] gi|195994242|gb|EDX58197.1| cold shock protein CspD [Bacillus cereus W] gi|196025380|gb|EDX64050.1| cold shock protein CspD [Bacillus cereus 03BB108] gi|196027726|gb|EDX66340.1| cold shock protein CspD [Bacillus cereus NVH0597-99] gi|206735464|gb|EDZ52632.1| cold shock protein CspD [Bacillus cereus AH1134] gi|206744809|gb|EDZ56215.1| cold shock protein CspD [Bacillus cereus H3081.97] gi|217066836|gb|ACJ81086.1| cold shock protein CspD [Bacillus cereus AH187] gi|218162012|gb|ACK62004.1| cold shock protein CspD [Bacillus cereus B4264] gi|218537043|gb|ACK89441.1| cold shock protein CspD [Bacillus cereus AH820] gi|221242393|gb|ACM15103.1| cold shock protein [Bacillus cereus Q1] gi|225785799|gb|ACO26016.1| cold shock protein CspD [Bacillus cereus 03BB102] gi|227007679|gb|ACP17422.1| cold shock protein CspD [Bacillus anthracis str. CDC 684] gi|228584445|gb|EEK42578.1| Cold shock protein cspB [Bacillus cereus m1293] gi|228590410|gb|EEK48274.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|228596364|gb|EEK54036.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1] gi|228602371|gb|EEK59860.1| Cold shock protein cspB [Bacillus cereus 172560W] gi|228625000|gb|EEK81766.1| Cold shock protein cspB [Bacillus cereus ATCC 4342] gi|228630490|gb|EEK87138.1| Cold shock protein cspB [Bacillus cereus m1550] gi|228636116|gb|EEK92597.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|228641880|gb|EEK98179.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26] gi|228653357|gb|EEL09234.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4] gi|228659077|gb|EEL14729.1| Cold shock protein cspB [Bacillus cereus 95/8201] gi|228671167|gb|EEL26472.1| Cold shock protein cspB [Bacillus cereus Rock1-15] gi|228689460|gb|EEL43274.1| Cold shock protein cspB [Bacillus cereus Rock3-42] gi|228695920|gb|EEL48766.1| Cold shock protein cspB [Bacillus cereus Rock3-44] gi|228701187|gb|EEL53700.1| Cold shock protein cspB [Bacillus cereus Rock4-2] gi|228710793|gb|EEL62764.1| Cold shock protein cspB [Bacillus cereus F65185] gi|228722775|gb|EEL74160.1| Cold shock protein cspB [Bacillus cereus AH676] gi|228771623|gb|EEM20090.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228798576|gb|EEM45563.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804553|gb|EEM51158.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228811105|gb|EEM57447.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823515|gb|EEM69344.1| Cold shock protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829825|gb|EEM75447.1| Cold shock protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228836085|gb|EEM81446.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228842183|gb|EEM87282.1| Cold shock protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265786|gb|ACQ47423.1| cold shock protein CspD [Bacillus anthracis str. A0248] gi|296326378|gb|ADH09306.1| cold shock protein [Bacillus thuringiensis BMB171] gi|300378542|gb|ADK07446.1| cold shock protein [Bacillus cereus biovar anthracis str. CI] gi|324328763|gb|ADY24023.1| cold shock protein CspD [Bacillus thuringiensis serovar finitimus YBT-020] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 MQTGKVKWFNSEKGFGFIEVE----GGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|331700983|ref|YP_004397942.1| cold-shock DNA-binding domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329128326|gb|AEB72879.1| cold-shock DNA-binding domain protein [Lactobacillus buchneri NRRL B-30929] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKGYGFIT E G DVF+H SA+ + G L EGQ VT D V++ Sbjct: 1 MEQGTVKWFNGDKGYGFIT----LEDGKDVFVHFSAINADGYKTLEEGQKVTLD-VEDSD 55 Query: 62 NGKYSAENLKLVP 74 G +A N+ +V Sbjct: 56 RGPQAA-NVTVVE 67 >gi|154496406|ref|ZP_02035102.1| hypothetical protein BACCAP_00695 [Bacteroides capillosus ATCC 29799] gi|150274489|gb|EDN01566.1| hypothetical protein BACCAP_00695 [Bacteroides capillosus ATCC 29799] Length = 70 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KG+GFI+ + + DVF+H SA+ G L EGQ V+YD + Sbjct: 1 MYQGTVKWFNETKGFGFISND---DGSGDVFVHFSAILVDGFKTLAEGQKVSYDTEPDPK 57 Query: 62 N-GKYSAENLKLV 73 + GK A N++ + Sbjct: 58 DAGKLRAVNVRPL 70 >gi|86356092|ref|YP_467984.1| cold shock protein [Rhizobium etli CFN 42] gi|190890106|ref|YP_001976648.1| cold shock protein [Rhizobium etli CIAT 652] gi|218461048|ref|ZP_03501139.1| probable cold shock protein [Rhizobium etli Kim 5] gi|218515057|ref|ZP_03511897.1| probable cold shock protein [Rhizobium etli 8C-3] gi|86280194|gb|ABC89257.1| probable cold shock protein [Rhizobium etli CFN 42] gi|190695385|gb|ACE89470.1| probable cold shock protein [Rhizobium etli CIAT 652] Length = 74 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D ++ Sbjct: 5 IMTTGTVKWFNSTKGFGFIQPD---NGGADAFVHISAVERAGMRELVEGQKIGFDLERDH 61 Query: 61 ANGKYSAENLK 71 +GK SA NL+ Sbjct: 62 KSGKMSACNLQ 72 >gi|84502886|ref|ZP_01000999.1| cold shock family protein [Oceanicola batsensis HTCC2597] gi|84388869|gb|EAQ01739.1| cold shock family protein [Oceanicola batsensis HTCC2597] Length = 68 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PEG DVF+H SAV +GL L +G V++D ++ Sbjct: 1 MATGTVKWFNTTKGYGFIAPEG---GSKDVFVHISAVERSGLTGLQDGAKVSFDL-ESGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA NL L+ Sbjct: 57 DGRESASNLALL 68 >gi|332637467|ref|ZP_08416330.1| cold shock protein [Weissella cibaria KACC 11862] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GF++ E SGDDVF+H SA+ G +L EGQ V+++ Q D Sbjct: 1 MEQGTVKWFNADKGFGFLSRE----SGDDVFVHFSAIQGDGFKSLEEGQAVSFEVQQGD- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGLQAANVTKL 66 >gi|294499467|ref|YP_003563167.1| cold shock protein [Bacillus megaterium QM B1551] gi|295704817|ref|YP_003597892.1| cold shock protein [Bacillus megaterium DSM 319] gi|294349404|gb|ADE69733.1| cold shock protein [Bacillus megaterium QM B1551] gi|294802476|gb|ADF39542.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E +GDDVF+H SA+ S G +L EGQ VT+D V+ Sbjct: 1 MEKGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSEGFKSLDEGQAVTFD-VEEGQ 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|260463314|ref|ZP_05811515.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|259030904|gb|EEW32179.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] Length = 69 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + DVF+H SAV AG+ ++ EGQ V Y+ V+++ Sbjct: 1 MSTGTVKWFNATKGFGFIQPD---DGSADVFVHISAVERAGMRDIVEGQKVGYEMVRDNK 57 Query: 62 NGKYSAENLK 71 +GK SA+ LK Sbjct: 58 SGKMSADQLK 67 >gi|183598325|ref|ZP_02959818.1| hypothetical protein PROSTU_01715 [Providencia stuartii ATCC 25827] gi|188020499|gb|EDU58539.1| hypothetical protein PROSTU_01715 [Providencia stuartii ATCC 25827] Length = 83 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G+D+F H S + G L GQ V + Sbjct: 1 METGTVKWFNNAKGFGFICPE---NGGEDIFAHYSCIQMEGYRTLKAGQKVNFSI-NTGP 56 Query: 62 NGKYSAENLKLVPKSSN 78 G ++ NL ++P S+ Sbjct: 57 KGNHA--NL-IIPIESS 70 >gi|197123689|ref|YP_002135640.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|196173538|gb|ACG74511.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +G G+DVF H +A+ S G +L EGQ V +D + Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQSEGFRSLAEGQKVEFDVTKGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--LQAANVRPL 67 >gi|149915747|ref|ZP_01904272.1| cold shock protein CspA [Roseobacter sp. AzwK-3b] gi|149810329|gb|EDM70174.1| cold shock protein CspA [Roseobacter sp. AzwK-3b] Length = 68 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PEG G DVF+H SAV AGL L + Q VT+D + Sbjct: 1 MANGTVKWFNTTKGYGFIAPEG---GGKDVFVHISAVERAGLTGLADNQKVTFDI-EAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N+ L Sbjct: 57 DGRESAANIAL 67 >gi|85858086|ref|YP_460288.1| cold shock protein [Syntrophus aciditrophicus SB] gi|85721177|gb|ABC76120.1| cold shock protein [Syntrophus aciditrophicus SB] Length = 90 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI + G DVF+H SA+ S+G L EGQ V+++ VQ Sbjct: 25 MPEGKVKWFNEQKGFGFIEKD----EGGDVFVHYSAIQSSGFKTLYEGQRVSFE-VQTGQ 79 Query: 62 NGKYSAENLKLV 73 G +A N+K + Sbjct: 80 KGP-AAVNVKPI 90 >gi|148255251|ref|YP_001239836.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp. BTAi1] gi|146407424|gb|ABQ35930.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1] Length = 69 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++GS+KW+NP KGYGFI P G DVF+H SAV AGL L E Q + YD V++ Sbjct: 4 YKGSVKWFNPTKGYGFIKPAGGD---KDVFVHISAVERAGLTTLNENQAIEYDLVES--R 58 Query: 63 GKYSAENLKL 72 GK SAENLKL Sbjct: 59 GKTSAENLKL 68 >gi|260589144|ref|ZP_05855057.1| cold-shock domain protein [Blautia hansenii DSM 20583] gi|331082560|ref|ZP_08331685.1| cold shock-like protein cspLA [Lachnospiraceae bacterium 6_1_63FAA] gi|260540564|gb|EEX21133.1| cold-shock domain protein [Blautia hansenii DSM 20583] gi|330400538|gb|EGG80168.1| cold shock-like protein cspLA [Lachnospiraceae bacterium 6_1_63FAA] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFIT E G DVF+H SA+ G +L EGQ V+YD + A Sbjct: 1 MNKGTVKWFNAEKGYGFIT----GEDGQDVFVHFSAINGEGFKSLEEGQAVSYDLTEG-A 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGMQAANVEKL 66 >gi|210622637|ref|ZP_03293297.1| hypothetical protein CLOHIR_01245 [Clostridium hiranonis DSM 13275] gi|210154138|gb|EEA85144.1| hypothetical protein CLOHIR_01245 [Clostridium hiranonis DSM 13275] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI+ EG DDVF+H SA+ + G +L EGQ V ++ V + A Sbjct: 1 MKTGVVKWFNNEKGFGFISVEGE----DDVFVHFSAIQTEGYKSLEEGQKVEFEVV-DGA 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 KGPQAANVVKL 66 >gi|182436795|ref|YP_001824514.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|239943459|ref|ZP_04695396.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998] gi|239989914|ref|ZP_04710578.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379] gi|282860706|ref|ZP_06269772.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|291446930|ref|ZP_06586320.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|297192805|ref|ZP_06910203.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|326777390|ref|ZP_08236655.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465311|dbj|BAG19831.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|282564442|gb|EFB69978.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|291349877|gb|EFE76781.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|297151505|gb|EFH31205.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|320009215|gb|ADW04065.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] gi|326657723|gb|EGE42569.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q+V +D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQVVNFDVTQGPK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENVT 65 >gi|157691252|ref|YP_001485714.1| cold-shock protein [Bacillus pumilus SAFR-032] gi|157680010|gb|ABV61154.1| cold-shock protein [Bacillus pumilus SAFR-032] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V++D Q Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----EGDDVFVHFSAIQGDGFKSLDEGQKVSFDVEQGSR 56 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 57 G--AQAANVQKI 66 >gi|77917817|ref|YP_355632.1| cold shock protein [Pelobacter carbinolicus DSM 2380] gi|77543900|gb|ABA87462.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus DSM 2380] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFIT + G DVF+H SA+ G +L EG+ V+++ Q Sbjct: 1 MIQGTVKWFNDAKGYGFITQD----DGPDVFVHYSAIQVDGYKSLNEGERVSFEVSQGSK 56 Query: 62 NGKYSAENLKLV 73 A N+ V Sbjct: 57 G--PQASNVAKV 66 >gi|126724626|ref|ZP_01740469.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2150] gi|126705790|gb|EBA04880.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2150] Length = 68 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ G+DVF+H SAV AGL L + Q VTY+ + Sbjct: 1 MANGTVKWFNSTKGYGFIAPDA---GGNDVFVHISAVERAGLTGLKDNQKVTYEL-ETGR 56 Query: 62 NGKYSAENLKL 72 +GK SA +L L Sbjct: 57 DGKQSAGDLAL 67 >gi|261821256|ref|YP_003259362.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] gi|261605269|gb|ACX87755.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] Length = 73 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|89056116|ref|YP_511567.1| cold-shock DNA-binding protein family protein [Jannaschia sp. CCS1] gi|88865665|gb|ABD56542.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1] Length = 68 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G DVF+H SAV +GL L + Q VTYD + Sbjct: 1 MANGTVKWFNSTKGFGFIAPET---GGKDVFVHISAVERSGLTGLADNQKVTYDL-EAGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA NLK V Sbjct: 57 DGRESAVNLKAV 68 >gi|172057695|ref|YP_001814155.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|172057697|ref|YP_001814157.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990216|gb|ACB61138.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum 255-15] gi|171990218|gb|ACB61140.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum 255-15] Length = 66 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E +GDDVF+H SA+ + G +L EGQ V+++ V+ Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQTDGFKSLDEGQEVSFE-VEEGQ 55 Query: 62 NGKYSAENLKL 72 G + KL Sbjct: 56 RGPQATNVTKL 66 >gi|51595435|ref|YP_069626.1| cold shock protein CspE [Yersinia pseudotuberculosis IP 32953] gi|108808497|ref|YP_652413.1| cold shock protein CspE [Yersinia pestis Antiqua] gi|145599922|ref|YP_001163998.1| cold shock protein CspE [Yersinia pestis Pestoides F] gi|149365504|ref|ZP_01887539.1| putative cold shock protein [Yersinia pestis CA88-4125] gi|153947984|ref|YP_001401920.1| cold shock protein CspE [Yersinia pseudotuberculosis IP 31758] gi|161484846|ref|NP_668492.2| cold shock protein CspE [Yersinia pestis KIM 10] gi|161511416|ref|NP_992489.2| cold shock protein CspE [Yersinia pestis biovar Microtus str. 91001] gi|162418633|ref|YP_001606345.1| cold shock protein CspE [Yersinia pestis Angola] gi|165925190|ref|ZP_02221022.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165937609|ref|ZP_02226171.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008509|ref|ZP_02229407.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212360|ref|ZP_02238395.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167398559|ref|ZP_02304083.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422542|ref|ZP_02314295.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423259|ref|ZP_02315012.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025252|ref|YP_001721757.1| cold shock protein CspE [Yersinia pseudotuberculosis YPIII] gi|186894465|ref|YP_001871577.1| cold shock protein CspE [Yersinia pseudotuberculosis PB1/+] gi|218929676|ref|YP_002347551.1| cold shock protein CspE [Yersinia pestis CO92] gi|229838141|ref|ZP_04458300.1| DNA-binding transcriptional repressor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895932|ref|ZP_04511102.1| DNA-binding transcriptional repressor [Yersinia pestis Pestoides A] gi|229898749|ref|ZP_04513894.1| DNA-binding transcriptional repressor [Yersinia pestis biovar Orientalis str. India 195] gi|229901480|ref|ZP_04516602.1| DNA-binding transcriptional repressor [Yersinia pestis Nepal516] gi|238755048|ref|ZP_04616396.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473] gi|238758047|ref|ZP_04619228.1| hypothetical protein yaldo0001_9270 [Yersinia aldovae ATCC 35236] gi|238762891|ref|ZP_04623859.1| Cold shock-like protein cspE [Yersinia kristensenii ATCC 33638] gi|238785727|ref|ZP_04629701.1| Cold shock-like protein cspE [Yersinia bercovieri ATCC 43970] gi|238791629|ref|ZP_04635267.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909] gi|238795419|ref|ZP_04638934.1| Cold shock-like protein cspE [Yersinia mollaretii ATCC 43969] gi|270263689|ref|ZP_06191958.1| Cold shock-like protein CspE [Serratia odorifera 4Rx13] gi|270489665|ref|ZP_06206739.1| cold shock protein CspE [Yersinia pestis KIM D27] gi|284988376|ref|YP_003422335.1| cold shock protein [Yersinia pestis Nepal516] gi|293392426|ref|ZP_06636748.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] gi|51588717|emb|CAH20328.1| putative cold shock protein [Yersinia pseudotuberculosis IP 32953] gi|108780410|gb|ABG14468.1| cold shock protein E (CspE) [Yersinia pestis Antiqua] gi|115348287|emb|CAL21218.1| putative cold shock protein [Yersinia pestis CO92] gi|145211618|gb|ABP41025.1| cold shock protein E (CspE) [Yersinia pestis Pestoides F] gi|149291917|gb|EDM41991.1| putative cold shock protein [Yersinia pestis CA88-4125] gi|152959479|gb|ABS46940.1| cold shock DNA-binding domain protein [Yersinia pseudotuberculosis IP 31758] gi|162351448|gb|ABX85396.1| cold shock DNA-binding domain protein [Yersinia pestis Angola] gi|165914359|gb|EDR32974.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922797|gb|EDR39948.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992891|gb|EDR45192.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206291|gb|EDR50771.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166958556|gb|EDR55577.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051063|gb|EDR62471.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057429|gb|EDR67175.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751786|gb|ACA69304.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186697491|gb|ACC88120.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|229681409|gb|EEO77503.1| DNA-binding transcriptional repressor [Yersinia pestis Nepal516] gi|229688297|gb|EEO80368.1| DNA-binding transcriptional repressor [Yersinia pestis biovar Orientalis str. India 195] gi|229694507|gb|EEO84554.1| DNA-binding transcriptional repressor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700855|gb|EEO88884.1| DNA-binding transcriptional repressor [Yersinia pestis Pestoides A] gi|238698902|gb|EEP91651.1| Cold shock-like protein cspE [Yersinia kristensenii ATCC 33638] gi|238703801|gb|EEP96337.1| hypothetical protein yaldo0001_9270 [Yersinia aldovae ATCC 35236] gi|238706752|gb|EEP99121.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473] gi|238713367|gb|EEQ05405.1| Cold shock-like protein cspE [Yersinia bercovieri ATCC 43970] gi|238720538|gb|EEQ12339.1| Cold shock-like protein cspE [Yersinia mollaretii ATCC 43969] gi|238729245|gb|EEQ20761.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909] gi|270042573|gb|EFA15668.1| Cold shock-like protein CspE [Serratia odorifera 4Rx13] gi|270338169|gb|EFA48946.1| cold shock protein CspE [Yersinia pestis KIM D27] gi|291425080|gb|EFE98287.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] Length = 69 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ N A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQRVEFEIT-NGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|302879451|ref|YP_003848015.1| cold-shock DNA-binding domain-containing protein [Gallionella capsiferriformans ES-2] gi|302582240|gb|ADL56251.1| cold-shock DNA-binding domain protein [Gallionella capsiferriformans ES-2] Length = 67 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + +D+F H SA+ +G +L EGQ V++D V+ Sbjct: 1 MATGTVKWFNDAKGFGFITPD---DGSEDLFAHFSAINMSGFKSLKEGQKVSFDVVKGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--NQASNIQ 65 >gi|126729016|ref|ZP_01744831.1| cold shock family protein [Sagittula stellata E-37] gi|126710946|gb|EBA09997.1| cold shock family protein [Sagittula stellata E-37] Length = 68 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V+Y+ + Sbjct: 1 MPNGTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYEL-REGR 56 Query: 62 NGKYSAENLKLV 73 +G+ A +LK++ Sbjct: 57 DGRTMASDLKVI 68 >gi|270261164|ref|ZP_06189437.1| hypothetical protein SOD_a03890 [Serratia odorifera 4Rx13] gi|270044648|gb|EFA17739.1| hypothetical protein SOD_a03890 [Serratia odorifera 4Rx13] Length = 73 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V++D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVSFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|289434645|ref|YP_003464517.1| cold-shock domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170889|emb|CBH27431.1| cold-shock domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 66 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E +GDDVF+H SA+ G +L EGQ V++D V+ Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQGDGFKSLDEGQAVSFD-VEEGQ 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|71909004|ref|YP_286591.1| cold-shock DNA-binding protein family protein [Dechloromonas aromatica RCB] gi|71848625|gb|AAZ48121.1| cold-shock DNA-binding protein family [Dechloromonas aromatica RCB] Length = 68 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P +E G+D+F H SA+ G L E Q VT+D V N Sbjct: 1 MANGTVKWFNDSKGFGFISP---SEGGEDLFAHFSAIQGNGFKTLAENQKVTFDVV-NGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|15805932|ref|NP_294631.1| CSD family cold shock protein [Deinococcus radiodurans R1] gi|6458627|gb|AAF10483.1|AE001943_3 cold shock protein, CSD family [Deinococcus radiodurans R1] Length = 133 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI TE DVF H SA+ S+G L EG V ++ Sbjct: 48 MATGRVKWFNAEKGFGFIE----TEGSADVFAHYSAINSSGFRKLNEGDEVEFEIEPGQN 103 Query: 62 NGKYSAENLKLVPKS 76 A+N+ + + Sbjct: 104 GKGPQAKNIVVTKAA 118 >gi|218681656|ref|ZP_03529457.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894] Length = 69 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N KG+GFI P+ + DVF+H SAV AG+ L EGQ + YD V++ Sbjct: 1 MNSGVVKWFNGTKGFGFIQPD---DGSTDVFVHISAVERAGMRELVEGQKIRYDLVRDKR 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKNSADNLQ 67 >gi|229029377|ref|ZP_04185462.1| Cold shock-like protein cspB [Bacillus cereus AH1271] gi|228731937|gb|EEL82834.1| Cold shock-like protein cspB [Bacillus cereus AH1271] Length = 77 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + + G Sbjct: 14 QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 68 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 69 PQAANVVKL 77 >gi|206579703|ref|YP_002239721.1| cold shock protein CspE [Klebsiella pneumoniae 342] gi|288936563|ref|YP_003440622.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|206568761|gb|ACI10537.1| cold shock protein CspE [Klebsiella pneumoniae 342] gi|288891272|gb|ADC59590.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] Length = 69 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ N A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVMAI 69 >gi|288554127|ref|YP_003426062.1| cold shock protein CspC [Bacillus pseudofirmus OF4] gi|288545287|gb|ADC49170.1| cold shock protein CspC [Bacillus pseudofirmus OF4] Length = 65 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFNAEKGFGFIERE----DGDDVFVHFSAINSEGFKSLDEGQDVEFEIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|145592834|ref|YP_001157131.1| cold-shock DNA-binding domain-containing protein [Salinispora tropica CNB-440] gi|159035978|ref|YP_001535231.1| cold-shock DNA-binding domain-containing protein [Salinispora arenicola CNS-205] gi|238061348|ref|ZP_04606057.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|145302171|gb|ABP52753.1| cold-shock DNA-binding protein family [Salinispora tropica CNB-440] gi|157914813|gb|ABV96240.1| cold-shock DNA-binding domain protein [Salinispora arenicola CNS-205] gi|237883159|gb|EEP71987.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] Length = 67 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + G DVF+H SA+ G L +GQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFIAVD----GGQDVFVHFSAIEMDGYKALDDGQRVEFEIAQGQK 56 Query: 62 NGKYSAENLKLV 73 AE +++V Sbjct: 57 G--PQAERVRVV 66 >gi|86743144|ref|YP_483544.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3] gi|86570006|gb|ABD13815.1| cold-shock DNA-binding protein family [Frankia sp. CcI3] Length = 67 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ +G G DVF+H S++ + G +L EGQ V ++ VQ Sbjct: 1 MAQGTVKWFNAEKGFGFISVDG---GGPDVFVHYSSIVADGYKSLDEGQSVQFEIVQGQK 57 Query: 62 NGKYSAENLKLV 73 A+N++ V Sbjct: 58 G--PQADNVQPV 67 >gi|308067105|ref|YP_003868710.1| Cold shock-like protein cspLB (CspB) [Paenibacillus polymyxa E681] gi|305856384|gb|ADM68172.1| Cold shock-like protein cspLB (CspB) [Paenibacillus polymyxa E681] Length = 66 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E G DVF+H SA+ G +L EGQ V ++ V+ + Sbjct: 1 MQTGTVKWFNAEKGFGFIEVE----GGSDVFVHFSAIQGDGFKSLDEGQRVEFNVVEGN- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQAENVVKL 66 >gi|116515229|ref|YP_802858.1| cold shock protein CspE [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257083|gb|ABJ90765.1| RNA chaperone, transcription antiterminator [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 69 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEG-AKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVVSV 69 >gi|299822994|ref|ZP_07054880.1| cold shock protein CspA [Listeria grayi DSM 20601] gi|299816523|gb|EFI83761.1| cold shock protein CspA [Listeria grayi DSM 20601] Length = 66 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E +GDDVF+H SA+ G +L EGQ V++D V+ Sbjct: 1 METGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQGDGFKSLDEGQAVSFD-VEEGQ 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|53718538|ref|YP_107524.1| cold shock-like protein [Burkholderia pseudomallei K96243] gi|53725849|ref|YP_103842.1| cold-shock domain-contain protein [Burkholderia mallei ATCC 23344] gi|67642114|ref|ZP_00440875.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8 horse 4] gi|115352619|ref|YP_774458.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria AMMD] gi|121599049|ref|YP_991922.1| cold-shock domain-contain protein [Burkholderia mallei SAVP1] gi|124383933|ref|YP_001027037.1| cold-shock domain-contain protein [Burkholderia mallei NCTC 10229] gi|126441710|ref|YP_001058009.1| cold shock protein [Burkholderia pseudomallei 668] gi|126450006|ref|YP_001081686.1| cold-shock domain-contain protein [Burkholderia mallei NCTC 10247] gi|126453970|ref|YP_001065243.1| cold shock protein [Burkholderia pseudomallei 1106a] gi|134281301|ref|ZP_01768010.1| cold-shock domain family protein [Burkholderia pseudomallei 305] gi|134296693|ref|YP_001120428.1| cold-shock DNA-binding protein family protein [Burkholderia vietnamiensis G4] gi|161523955|ref|YP_001578967.1| cold-shock DNA-binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|167003876|ref|ZP_02269655.1| cold-shock DNA-binding domain protein [Burkholderia mallei PRL-20] gi|167561845|ref|ZP_02354761.1| cold-shock domain family protein-related protein [Burkholderia oklahomensis EO147] gi|167569068|ref|ZP_02361942.1| cold-shock domain family protein-related protein [Burkholderia oklahomensis C6786] gi|167580101|ref|ZP_02372975.1| cold-shock domain family protein-related protein [Burkholderia thailandensis TXDOH] gi|167585698|ref|ZP_02378086.1| cold-shock domain family protein-related protein [Burkholderia ubonensis Bu] gi|167618166|ref|ZP_02386797.1| cold-shock domain family protein-related protein [Burkholderia thailandensis Bt4] gi|167718444|ref|ZP_02401680.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei DM98] gi|167737494|ref|ZP_02410268.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei 14] gi|167814612|ref|ZP_02446292.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei 91] gi|167823082|ref|ZP_02454553.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei 9] gi|167835723|ref|ZP_02462606.1| cold-shock domain family protein-related protein [Burkholderia thailandensis MSMB43] gi|167844643|ref|ZP_02470151.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei B7210] gi|167901628|ref|ZP_02488833.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei NCTC 13177] gi|167909877|ref|ZP_02496968.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei 112] gi|167917900|ref|ZP_02504991.1| cold-shock domain family protein-related protein [Burkholderia pseudomallei BCC215] gi|170697706|ref|ZP_02888794.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171319749|ref|ZP_02908837.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|172061480|ref|YP_001809132.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria MC40-6] gi|189351284|ref|YP_001946912.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|217419769|ref|ZP_03451275.1| cold shock family protein [Burkholderia pseudomallei 576] gi|221199249|ref|ZP_03572293.1| cold shock protein [Burkholderia multivorans CGD2M] gi|221205849|ref|ZP_03578864.1| cold shock protein [Burkholderia multivorans CGD2] gi|221211471|ref|ZP_03584450.1| cold shock protein [Burkholderia multivorans CGD1] gi|237811160|ref|YP_002895611.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|242316861|ref|ZP_04815877.1| cold shock family protein [Burkholderia pseudomallei 1106b] gi|254181506|ref|ZP_04888103.1| cold shock protein [Burkholderia pseudomallei 1655] gi|254196847|ref|ZP_04903271.1| cold shock protein [Burkholderia pseudomallei S13] gi|254202546|ref|ZP_04908909.1| cold-shock domain family protein [Burkholderia mallei FMH] gi|254207883|ref|ZP_04914233.1| cold-shock domain family protein [Burkholderia mallei JHU] gi|254262054|ref|ZP_04953108.1| cold shock family protein [Burkholderia pseudomallei 1710a] gi|254296417|ref|ZP_04963874.1| cold shock protein [Burkholderia pseudomallei 406e] gi|254298241|ref|ZP_04965693.1| cold shock protein [Burkholderia pseudomallei 406e] gi|257140008|ref|ZP_05588270.1| cold-shock domain-contain protein [Burkholderia thailandensis E264] gi|52208952|emb|CAH34891.1| cold shock-like protein [Burkholderia pseudomallei K96243] gi|52429272|gb|AAU49865.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344] gi|115282607|gb|ABI88124.1| cold-shock DNA-binding protein family [Burkholderia ambifaria AMMD] gi|121227859|gb|ABM50377.1| cold-shock domain family protein [Burkholderia mallei SAVP1] gi|124291953|gb|ABN01222.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC 10229] gi|126221203|gb|ABN84709.1| cold shock family protein [Burkholderia pseudomallei 668] gi|126227612|gb|ABN91152.1| cold shock family protein [Burkholderia pseudomallei 1106a] gi|126242876|gb|ABO05969.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC 10247] gi|134139850|gb|ABO55593.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis G4] gi|134247607|gb|EBA47692.1| cold-shock domain family protein [Burkholderia pseudomallei 305] gi|147746793|gb|EDK53870.1| cold-shock domain family protein [Burkholderia mallei FMH] gi|147751777|gb|EDK58844.1| cold-shock domain family protein [Burkholderia mallei JHU] gi|157806110|gb|EDO83280.1| cold shock protein [Burkholderia pseudomallei 406e] gi|157808249|gb|EDO85419.1| cold shock protein [Burkholderia pseudomallei 406e] gi|160341384|gb|ABX14470.1| cold-shock DNA-binding domain protein [Burkholderia multivorans ATCC 17616] gi|169653590|gb|EDS86283.1| cold shock protein [Burkholderia pseudomallei S13] gi|170137454|gb|EDT05694.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171095021|gb|EDT40044.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|171993997|gb|ACB64916.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MC40-6] gi|184212044|gb|EDU09087.1| cold shock protein [Burkholderia pseudomallei 1655] gi|189335306|dbj|BAG44376.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|217397073|gb|EEC37089.1| cold shock family protein [Burkholderia pseudomallei 576] gi|221168832|gb|EEE01300.1| cold shock protein [Burkholderia multivorans CGD1] gi|221174687|gb|EEE07119.1| cold shock protein [Burkholderia multivorans CGD2] gi|221180534|gb|EEE12937.1| cold shock protein [Burkholderia multivorans CGD2M] gi|237506154|gb|ACQ98472.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|238523194|gb|EEP86634.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8 horse 4] gi|242140100|gb|EES26502.1| cold shock family protein [Burkholderia pseudomallei 1106b] gi|243060670|gb|EES42856.1| cold-shock DNA-binding domain protein [Burkholderia mallei PRL-20] gi|254220743|gb|EET10127.1| cold shock family protein [Burkholderia pseudomallei 1710a] gi|325526419|gb|EGD04007.1| cold-shock domain-containing protein [Burkholderia sp. TJI49] Length = 67 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ VQ Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|84495365|ref|ZP_00994484.1| cold shock protein [Janibacter sp. HTCC2649] gi|84384858|gb|EAQ00738.1| cold shock protein [Janibacter sp. HTCC2649] Length = 67 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAIDTQGYRSLDENQQVEFEVTQGPK 57 Query: 62 NGKYSAENLKLV 73 AE ++ + Sbjct: 58 G--PQAEQVRPL 67 >gi|251783434|ref|YP_002997739.1| cold shock protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392066|dbj|BAH82525.1| cold shock protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 69 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ TE+G DVF H SA+ + G L EGQ V +D + Sbjct: 3 MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQTNGFKTLEEGQKVEFDVEEGQR 58 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 59 G--PQAVNITKL 68 >gi|91199641|emb|CAI77996.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|96771688|emb|CAI78270.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|114049906|emb|CAK50923.1| putative cold shock protein [Streptomyces ambofaciens] gi|114050128|emb|CAK51161.1| putative cold shock protein [Streptomyces ambofaciens] gi|117164235|emb|CAJ87776.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|126347347|emb|CAJ89054.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] Length = 67 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+P+ E G DVF+H SA+ +G NL E Q V ++ Q Sbjct: 1 MAQGTVKWFNGEKGFGFISPD---EGGPDVFVHFSAIQGSGFRNLEENQRVEFEITQGQR 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|332526271|ref|ZP_08402400.1| cold-shock DNA-binding protein family protein [Rubrivivax benzoatilyticus JA2] gi|332110105|gb|EGJ10733.1| cold-shock DNA-binding protein family protein [Rubrivivax benzoatilyticus JA2] Length = 79 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 5/76 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G DVF H SAV G L +G V ++ VQ Sbjct: 1 MAVGTVKWFNDAKGFGFIEPEG---GGADVFAHFSAVQMDGFRTLKQGSRVEFELVQGPK 57 Query: 62 NGKYSAENLKLVPKSS 77 A+N++ V ++ Sbjct: 58 G--NLAQNIRPVATAT 71 >gi|256826371|ref|YP_003150331.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM 20547] gi|256689764|gb|ACV07566.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM 20547] Length = 67 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI +G GDDVF+H SA+ + G +L E Q V ++ Q Sbjct: 1 MAQGIVKWFNAEKGFGFIQQDG---GGDDVFVHFSAIQTNGYRSLEENQRVEFEITQGPK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--QQAENV 64 >gi|15616172|ref|NP_244477.1| cold-shock protein [Bacillus halodurans C-125] gi|10176234|dbj|BAB07329.1| cold-shock protein [Bacillus halodurans C-125] Length = 65 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ + G L EGQ V +D V+ A G Sbjct: 2 QGKVKWFNAEKGFGFIERE----DGDDVFVHFSAINTDGFKTLDEGQSVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A KL Sbjct: 57 PQAANVTKL 65 >gi|322384501|ref|ZP_08058183.1| cold-shock protein molecular chaperone RNA-helicase co-factor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150711|gb|EFX44186.1| cold-shock protein molecular chaperone RNA-helicase co-factor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 76 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ V+ + Sbjct: 11 VQTGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIQGDGFKTLDEGQRVEFNVVEGN- 65 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 66 RGPQAENVVKL 76 >gi|251799709|ref|YP_003014440.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] gi|247547335|gb|ACT04354.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] Length = 65 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI TE G DVF+H SA+ + G L EGQ V +D V+ A G Sbjct: 2 QGKVKWFNAEKGYGFIE----TEQGGDVFVHFSAIQAEGFKTLEEGQAVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|134282646|ref|ZP_01769350.1| cold-shock domain family protein [Burkholderia pseudomallei 305] gi|254204405|ref|ZP_04910758.1| cold-shock domain family protein [Burkholderia mallei JHU] gi|134246203|gb|EBA46293.1| cold-shock domain family protein [Burkholderia pseudomallei 305] gi|147753991|gb|EDK61055.1| cold-shock domain family protein [Burkholderia mallei JHU] Length = 83 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFITP+ GDD+F H S + S G L E Q V+++ + Sbjct: 16 LMDTGTVKWFNETKGFGFITPDS---GGDDLFAHFSEIRSEGYKTLAENQKVSFE-TKRG 71 Query: 61 ANGKYSAENLKLV 73 G +A N+K + Sbjct: 72 PKGLQAA-NIKPL 83 >gi|21322752|dbj|BAB78536.2| cold shock protein-1 [Triticum aestivum] Length = 229 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI+PE + +D+F+H+SA+ S G +L E V ++ + D +G Sbjct: 6 KGTVKWFNVTKGFGFISPE---DGSEDLFVHQSAIKSDGYRSLNENDTVEFEVITGD-DG 61 Query: 64 KYSAENLK 71 + A ++ Sbjct: 62 RTKASDVT 69 >gi|221195898|ref|ZP_03568948.1| conserved domain protein [Atopobium rimae ATCC 49626] gi|221184232|gb|EEE16629.1| conserved domain protein [Atopobium rimae ATCC 49626] Length = 67 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP+KGYGFI+ E GDD+F+H S + G L EGQ V ++ Sbjct: 1 MAQGTVKWFNPEKGYGFISRE----DGDDLFVHYSEIEMDGYKTLDEGQPVEFEIT-TGQ 55 Query: 62 NGKYSAENL 70 NGK A ++ Sbjct: 56 NGKLQASSV 64 >gi|299535166|ref|ZP_07048491.1| cold shock protein [Lysinibacillus fusiformis ZC1] gi|298729483|gb|EFI70033.1| cold shock protein [Lysinibacillus fusiformis ZC1] Length = 66 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI + G+DVF+H + + G L EGQ V++D V+ + Sbjct: 1 MQQGIVKWFNNEKGYGFIE----CDDGEDVFVHFTGIQEEGFRTLEEGQKVSFDVVEGN- 55 Query: 62 NGKYSAENLKL 72 G ++ +KL Sbjct: 56 RGPQASNVVKL 66 >gi|237749127|ref|ZP_04579607.1| cold-shock DNA-binding domain-containing protein [Oxalobacter formigenes OXCC13] gi|229380489|gb|EEO30580.1| cold-shock DNA-binding domain-containing protein [Oxalobacter formigenes OXCC13] Length = 67 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITPE + G+D+F H SA+ G L EGQ V ++ Q Sbjct: 1 MATGTVKWFNDSKGFGFITPE---DGGEDLFAHFSAINMNGFKTLKEGQKVQFEVTQGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 58 G--KQASNIQSV 67 >gi|9968446|emb|CAC06102.1| cold shock protein [Lactobacillus plantarum] Length = 66 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT E +G DVF+H SA+ G +L EGQ V +D ++D Sbjct: 1 MEHGTVKWFNADKGFGFITRE----NGSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESD- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPPAANVTK 65 >gi|253575890|ref|ZP_04853224.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844684|gb|EES72698.1| cold-shock protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 65 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI TE G DVF+H SA+ + G L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFNAEKGYGFIE----TEEGGDVFVHFSAIQAEGFKTLEEGQSVEFEIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|291301635|ref|YP_003512913.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290570855|gb|ADD43820.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis DSM 44728] Length = 67 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G+ DVF+H SA+ + G L+EGQ V ++ Q Sbjct: 1 MANGTVKWFNAEKGFGFIERDGNE---PDVFVHFSAIQTQGYRELSEGQKVEFEVTQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN+K + Sbjct: 58 G--PQAENVKPL 67 >gi|317130282|ref|YP_004096564.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] gi|315475230|gb|ADU31833.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] Length = 67 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V+ Sbjct: 1 MNMQGKVKWFNAEKGFGFIERE----GGDDVFVHFSAIEQEGFKTLEEGQEVEFEIVEG- 55 Query: 61 ANGKYSAENLKL 72 A G ++ +KL Sbjct: 56 ARGPQASNVVKL 67 >gi|260655196|ref|ZP_05860684.1| conserved domain protein [Jonquetella anthropi E3_33 E1] gi|260630118|gb|EEX48312.1| conserved domain protein [Jonquetella anthropi E3_33 E1] Length = 65 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFIT TE G DVF+H SA+ G +L E V +D V+ + G Sbjct: 2 KGTVKWFNATKGYGFIT----TEEGKDVFVHFSAINMTGYKSLDENDSVEFDVVEGE-KG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|291296663|ref|YP_003508061.1| cold-shock DNA-binding domain-containing protein [Meiothermus ruber DSM 1279] gi|290471622|gb|ADD29041.1| cold-shock DNA-binding domain protein [Meiothermus ruber DSM 1279] Length = 68 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KGYGFI E SG DVF+H +A+ G +L EG V ++ Sbjct: 1 MNKGTVKWFNAEKGYGFIAQE----SGPDVFVHFTAIQGQGFKSLNEGDRVEFEIEPGKN 56 Query: 62 NGKYSAENLKL 72 A+N+KL Sbjct: 57 GKGPQAKNVKL 67 >gi|172041529|ref|YP_001801243.1| putative cold shock protein [Corynebacterium urealyticum DSM 7109] gi|171852833|emb|CAQ05809.1| putative cold shock protein [Corynebacterium urealyticum DSM 7109] Length = 67 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI PE + D+F+H S + S+G L E Q V ++ + Sbjct: 1 MAQGTVKWFNAEKGYGFIAPE---DGSADLFVHYSEIQSSGFRTLEEDQKVEFEVGEGAK 57 Query: 62 NGKYSAENLKLV 73 A+N++ + Sbjct: 58 G--PQAQNVQPL 67 >gi|114330329|ref|YP_746551.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas eutropha C91] gi|114307343|gb|ABI58586.1| cold shock protein E (CspE) [Nitrosomonas eutropha C91] Length = 67 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ + +D+F H SA++ G L EGQ V++D Q Sbjct: 1 MTTGIVKWFNDAKGFGFITPD---DGSEDLFAHFSAISMNGFKTLREGQRVSFDVTQGQK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|116494613|ref|YP_806347.1| cold shock protein [Lactobacillus casei ATCC 334] gi|191638050|ref|YP_001987216.1| Similar to cold shock protein, CspA family [Lactobacillus casei BL23] gi|239631790|ref|ZP_04674821.1| cold-shock DNA-binding family protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066162|ref|YP_003788185.1| cold shock protein [Lactobacillus casei str. Zhang] gi|116104763|gb|ABJ69905.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC 334] gi|190712352|emb|CAQ66358.1| Similar to cold shock protein, CspA family [Lactobacillus casei BL23] gi|239526255|gb|EEQ65256.1| cold-shock DNA-binding family protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438569|gb|ADK18335.1| Cold shock protein [Lactobacillus casei str. Zhang] gi|327382135|gb|AEA53611.1| Cold-shock domain family protein [Lactobacillus casei LC2W] gi|327385278|gb|AEA56752.1| Cold-shock domain family protein [Lactobacillus casei BD-II] Length = 66 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT++ +D Sbjct: 1 MEHGTVKWFNAEKGYGFITRE----DGSDVFVHFSAIQGDGYKTLEEGQAVTFEVEDSDR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--PQAVNV 63 >gi|114765785|ref|ZP_01444880.1| cold shock family protein [Pelagibaca bermudensis HTCC2601] gi|114541892|gb|EAU44928.1| cold shock family protein [Roseovarius sp. HTCC2601] Length = 68 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G DVF+H SAV AGL L++ Q VTYD V+ Sbjct: 1 MATGTVKWFNTTKGFGFIAPDA---GGKDVFVHISAVERAGLTGLSDDQKVTYD-VEAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESASNLAL 67 >gi|311029190|ref|ZP_07707280.1| cold-shock protein [Bacillus sp. m3-13] Length = 67 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E +GDDVF+H SA+ S G +L EGQ VT+D Q Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSEGFKSLDEGQKVTFDVEQGAR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--AQASNVQ 64 >gi|317127033|ref|YP_004093315.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] gi|315471981|gb|ADU28584.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] Length = 65 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V D G Sbjct: 2 TGKVKWFNSEKGFGFIERE----GGDDVFVHFSAIQGEGFKTLEEGQEVEFEIVDGD-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|163744665|ref|ZP_02152025.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45] gi|161381483|gb|EDQ05892.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45] Length = 68 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G D+F+H SAV AGL L + Q VT+D V+ Sbjct: 1 MATGTVKWFNTTKGFGFIAPDT---GGKDIFVHISAVERAGLTGLADNQKVTFD-VEAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N+ L Sbjct: 57 DGRESASNIAL 67 >gi|84499705|ref|ZP_00997993.1| cold shock protein CspA [Oceanicola batsensis HTCC2597] gi|84392849|gb|EAQ05060.1| cold shock protein CspA [Oceanicola batsensis HTCC2597] Length = 68 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + D+F+H SA+ AGL L +GQ VT+D ++ Sbjct: 1 MASGTVKWFNSTKGFGFIEP---ADGKKDIFVHISALERAGLSELKDGQAVTFDI-EDGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRSSAANLAL 67 >gi|32490926|ref|NP_871180.1| cold shock protein CspE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166132|dbj|BAC24323.1| cspE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 69 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ N A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 60 Query: 64 KYSAENLKL 72 +A + Sbjct: 61 PSAAHVTTI 69 >gi|197284318|ref|YP_002150190.1| cold shock protein CspE [Proteus mirabilis HI4320] gi|227358541|ref|ZP_03842866.1| cold shock protein [Proteus mirabilis ATCC 29906] gi|194681805|emb|CAR41046.1| putative cold shock protein [Proteus mirabilis HI4320] gi|227161252|gb|EEI46326.1| cold shock protein [Proteus mirabilis ATCC 29906] Length = 69 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + A G Sbjct: 5 KGNVKWFNETKGFGFITPE---DGSKDVFVHFSAIVSEGFKTLAEGQKVEFEVT-DGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVVAI 69 >gi|16974803|pdb|1HZA|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability gi|16974804|pdb|1HZA|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability Length = 67 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQRGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|116491359|ref|YP_810903.1| cold-shock DNA-binding protein family protein [Oenococcus oeni PSU-1] gi|118586607|ref|ZP_01544047.1| cold-shock protein E [Oenococcus oeni ATCC BAA-1163] gi|290890924|ref|ZP_06553988.1| hypothetical protein AWRIB429_1378 [Oenococcus oeni AWRIB429] gi|116092084|gb|ABJ57238.1| cold-shock DNA-binding protein family [Oenococcus oeni PSU-1] gi|118432922|gb|EAV39648.1| cold-shock protein E [Oenococcus oeni ATCC BAA-1163] gi|290479323|gb|EFD87983.1| hypothetical protein AWRIB429_1378 [Oenococcus oeni AWRIB429] Length = 67 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKGYGFIT + +G DVF+H SA+ + G +L EGQ VT++ V++ Sbjct: 1 METGTVKWFNADKGYGFITRD----NGGDVFVHFSAIQTDGFKSLDEGQKVTFE-VEDGQ 55 Query: 62 NGKYSAEN 69 G + Sbjct: 56 RGPQAVNV 63 >gi|332976448|gb|EGK13296.1| cold shock protein CspA [Desmospora sp. 8437] Length = 77 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFI EG DDVF+H SA+ S G +L EG V+++ VQ + Sbjct: 12 MIEGTVKWFNADKGFGFIEVEGR----DDVFVHFSAIQSEGFKSLDEGDKVSFEIVQGN- 66 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 67 RGDQAANVVKL 77 >gi|296129427|ref|YP_003636677.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] gi|296021242|gb|ADG74478.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] Length = 67 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI + + G DVF+H SA+ + G +L EGQ V ++ Q Sbjct: 1 MAQGAVKWFNAEKGFGFIAQD---DGGADVFVHYSAIDTQGYRSLDEGQRVEFEITQGQK 57 Query: 62 NGKYSAENLKLV 73 AE+++ + Sbjct: 58 G--PQAEHVRPL 67 >gi|37725743|gb|AAO32341.1| cold shock protein 1 [Streptomyces sp. AA8321] Length = 65 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ ++G +L E Q VT+D Q Sbjct: 1 MASGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVTFDVTQGPK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENIT 65 >gi|326692849|ref|ZP_08229854.1| cold shock protein [Leuconostoc argentinum KCTC 3773] Length = 66 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT E +GDDVF H SA+ S G L EGQ VT+D V++ Sbjct: 1 METGTVKWFNGDKGFGFITRE----NGDDVFAHFSAIQSDGFKTLDEGQSVTFD-VESGD 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGLQAANIVK 65 >gi|312144474|ref|YP_003995920.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] gi|311905125|gb|ADQ15566.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] Length = 67 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M++ G++KW++ KG+GFI E GDDVF H SA+ G NL EGQ V ++ V+ D Sbjct: 1 MIYTGTVKWFDGKKGFGFIERE----DGDDVFAHFSAIQEDGFKNLEEGQEVEFEIVEGD 56 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 57 -RGPQAANIVKL 67 >gi|315499666|ref|YP_004088469.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] gi|315417678|gb|ADU14318.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] Length = 67 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ E G DVF+H SAV SAGL +L++GQ V+Y+ + Sbjct: 1 MALGTVKWFNSIKGFGFIQPD---EGGIDVFVHASAVESAGLRSLSDGQKVSYEVQLD-- 55 Query: 62 NGKYSAENLKLV 73 G+ SA NL+++ Sbjct: 56 RGRSSASNLQII 67 >gi|20302392|emb|CAC80094.1| cold shock protein [Staphylococcus aureus] Length = 66 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DV +H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGE----NDVLVHFSAINQDGYKSLEEGQAVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|83950568|ref|ZP_00959301.1| cold shock family protein [Roseovarius nubinhibens ISM] gi|83838467|gb|EAP77763.1| cold shock family protein [Roseovarius nubinhibens ISM] Length = 68 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H SAV AGL L + Q VTYD + Sbjct: 1 MANGTVKWFNTTKGYGFIAPD---DGGKDVFVHISAVERAGLTGLADNQKVTYDL-EAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N+ L Sbjct: 57 DGRESAGNIVL 67 >gi|327441552|dbj|BAK17917.1| cold shock protein [Solibacillus silvestris StLB046] Length = 66 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V +D + + Sbjct: 1 MQQGTVKWFNSEKGFGFIEVE----GGNDVFVHFSAIQGEGFKTLDEGQKVEFDVEEGN- 55 Query: 62 NGKYSAENLKL 72 G + KL Sbjct: 56 RGPQATNVTKL 66 >gi|205373098|ref|ZP_03225902.1| CspD [Bacillus coahuilensis m4-4] Length = 66 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E +DVF+H SA+ G +L EGQ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGFGFIE----IEGAEDVFVHFSAIEGEGYKSLEEGQEVSFEIVEG-S 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|49082304|gb|AAT50552.1| PA0456 [synthetic construct] Length = 70 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFITPE SG DVF+H A+ G L EGQ V+++ VQ Sbjct: 3 RQNGTVKWFNETKGYGFITPE----SGPDVFVHFRAIEGNGFKTLAEGQKVSFEVVQGQK 58 Query: 62 NGKYSAENLKLV 73 AE ++++ Sbjct: 59 G--MQAERVQVI 68 >gi|82702420|ref|YP_411986.1| cold-shock DNA-binding domain-containing protein [Nitrosospira multiformis ATCC 25196] gi|82410485|gb|ABB74594.1| cold-shock DNA-binding protein family [Nitrosospira multiformis ATCC 25196] Length = 67 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP + +D+F H SA+ +G L EGQ VT++ Q Sbjct: 1 MATGTVKWFNEAKGFGFITP---VDGSEDLFAHFSAINMSGFKTLKEGQKVTFEITQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|23098474|ref|NP_691940.1| cold shock protein [Oceanobacillus iheyensis HTE831] gi|22776700|dbj|BAC12975.1| cold shock protein [Oceanobacillus iheyensis HTE831] Length = 66 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ GS+KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V++D + + Sbjct: 1 MNTGSVKWFNAEKGFGFIEVE----GGDDVFVHFSAIQGEGFKTLEEGQSVSFDIEEGN- 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGPQAANVVK 65 >gi|126654483|ref|ZP_01726209.1| cold shock protein [Bacillus sp. B14905] gi|169828303|ref|YP_001698461.1| cold shock protein [Lysinibacillus sphaericus C3-41] gi|299537124|ref|ZP_07050427.1| cold shock protein [Lysinibacillus fusiformis ZC1] gi|126589048|gb|EAZ83279.1| cold shock protein [Bacillus sp. B14905] gi|168992791|gb|ACA40331.1| Cold shock protein [Lysinibacillus sphaericus C3-41] gi|298727365|gb|EFI67937.1| cold shock protein [Lysinibacillus fusiformis ZC1] Length = 66 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G L EGQ V ++ V + Sbjct: 1 MKQGTVKWFNSEKGFGFIEVEGE----NDVFVHFSAIQGEGFKTLDEGQKVEFEVV-DGN 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAANVTKL 66 >gi|114569736|ref|YP_756416.1| cold-shock DNA-binding protein family protein [Maricaulis maris MCS10] gi|114340198|gb|ABI65478.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10] Length = 69 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 50/72 (69%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI PE + DVF+H SAV +G+ +TEGQ ++++ VQ+ Sbjct: 1 MATGTVKFFNTTKGFGFIQPE---DGSTDVFVHISAVERSGMTTITEGQKLSFEVVQDKR 57 Query: 62 NGKYSAENLKLV 73 +GK +AENL+ V Sbjct: 58 SGKNAAENLQAV 69 >gi|328472753|gb|EGF43604.1| hypothetical protein LM220_15640 [Listeria monocytogenes 220] Length = 72 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V+ Sbjct: 1 MQTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQR 56 Query: 62 NGK 64 + Sbjct: 57 GPQ 59 >gi|291616885|ref|YP_003519627.1| CspD [Pantoea ananatis LMG 20103] gi|291151915|gb|ADD76499.1| CspD [Pantoea ananatis LMG 20103] gi|327393313|dbj|BAK10735.1| cold shock-like protein CspD [Pantoea ananatis AJ13355] Length = 100 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G G+D+F H S + G L GQ V +D Q Sbjct: 27 METGTVKWFNNAKGFGFICPIG---GGEDIFAHYSTIQMDGYRTLKAGQQVHFDVHQGPK 83 Query: 62 N 62 Sbjct: 84 G 84 >gi|294498189|ref|YP_003561889.1| cold shock protein [Bacillus megaterium QM B1551] gi|295703539|ref|YP_003596614.1| cold shock protein [Bacillus megaterium DSM 319] gi|294348126|gb|ADE68455.1| cold shock protein [Bacillus megaterium QM B1551] gi|294801198|gb|ADF38264.1| cold shock protein [Bacillus megaterium DSM 319] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N +KG+GFI G +DVF+H SA+ S G L EGQ V ++ V+ Sbjct: 1 MATTGTVKWFNSEKGFGFIEVPGE----NDVFVHFSAIQSEGFKTLEEGQKVEFEIVEGQ 56 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 57 -RGPQAENVVKL 67 >gi|163736889|ref|ZP_02144307.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis BS107] gi|163740688|ref|ZP_02148082.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis 2.10] gi|161386546|gb|EDQ10921.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis 2.10] gi|161389493|gb|EDQ13844.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis BS107] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE G DVF+H SAV +GL L + Q V+Y+ + Sbjct: 1 MANGTVKWFNATKGYGFIEPES---GGKDVFVHISAVERSGLNGLNDNQKVSYEL-ETGR 56 Query: 62 NGKYSAENLKLV 73 +GK SA +L+L+ Sbjct: 57 DGKQSAGSLELL 68 >gi|158423022|ref|YP_001524314.1| cold shock protein [Azorhizobium caulinodans ORS 571] gi|158329911|dbj|BAF87396.1| cold shock protein [Azorhizobium caulinodans ORS 571] Length = 69 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P+ G DVF+H SAV AG+ L EGQ + ++ ++++ Sbjct: 1 MNFGTVKWFNATKGFGFIQPD---NGGSDVFVHISAVERAGMQGLAEGQKLQFEIIRDNK 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKNSAGNLQ 67 >gi|320539592|ref|ZP_08039257.1| cold shock protein [Serratia symbiotica str. Tucson] gi|320030351|gb|EFW12365.1| cold shock protein [Serratia symbiotica str. Tucson] Length = 73 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G+DVF H S + G L GQ V++D Q Sbjct: 1 MEMGTVKWFNNAKGFGFICPES---GGEDVFAHYSTIKMDGYRTLKAGQQVSFDVYQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|326792190|ref|YP_004310011.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] gi|326542954|gb|ADZ84813.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] Length = 65 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ Q + Sbjct: 2 TGTVKWFNAEKGFGFIARE----DGDDVFVHFSAIQGDGYKTLEEGQKVNFEITQGNRG- 56 Query: 64 KYSAENLK 71 AEN+ Sbjct: 57 -AQAENVT 63 >gi|160894411|ref|ZP_02075187.1| hypothetical protein CLOL250_01963 [Clostridium sp. L2-50] gi|156863722|gb|EDO57153.1| hypothetical protein CLOL250_01963 [Clostridium sp. L2-50] Length = 71 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KGYGFI+ + + DVF+H SA+ G L EGQ VT+D ++ Sbjct: 1 MNNGTVKWFNAEKGYGFIS---NNDGSGDVFVHFSAIQGEGYKTLVEGQQVTFDTEEDPK 57 Query: 62 NG-KYSAENLKLVP 74 G + A N+ +V Sbjct: 58 GGSRTRATNVVIVK 71 >gi|118477138|ref|YP_894289.1| cold-shock DNA-binding protein family protein [Bacillus thuringiensis str. Al Hakam] gi|228926734|ref|ZP_04089802.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932984|ref|ZP_04095847.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|118416363|gb|ABK84782.1| cold-shock DNA-binding protein family [Bacillus thuringiensis str. Al Hakam] gi|228826585|gb|EEM72356.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832847|gb|EEM78416.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 77 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + + G Sbjct: 14 QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 68 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 69 PQAANVVKL 77 >gi|226330617|ref|ZP_03806135.1| hypothetical protein PROPEN_04536 [Proteus penneri ATCC 35198] gi|225201412|gb|EEG83766.1| hypothetical protein PROPEN_04536 [Proteus penneri ATCC 35198] Length = 70 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFITP + DVF+H SA+ S +L EGQ V++ +N A G Sbjct: 6 TGTVKWFNDDKGFGFITP---KDGSKDVFVHFSAIQSDSFKSLKEGQEVSFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVIAL 70 >gi|68537049|ref|YP_251754.1| putative cold shock protein [Corynebacterium jeikeium K411] gi|260579394|ref|ZP_05847276.1| cold shock protein [Corynebacterium jeikeium ATCC 43734] gi|68264648|emb|CAI38136.1| putative cold shock protein [Corynebacterium jeikeium K411] gi|258602523|gb|EEW15818.1| cold shock protein [Corynebacterium jeikeium ATCC 43734] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+ + DVF+H S + +G L E Q V ++ + Sbjct: 1 MAQGTVKWFNAEKGFGFIAPD---DGSSDVFVHYSEIQGSGFRTLEENQKVEFEIGEGAK 57 Query: 62 NGKYSAENLKLV 73 A+N+ + Sbjct: 58 G--PQAQNVTAL 67 >gi|310639812|ref|YP_003944570.1| cold shock-like protein csplb [Paenibacillus polymyxa SC2] gi|309244762|gb|ADO54329.1| Cold shock-like protein cspLB [Paenibacillus polymyxa SC2] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E G DVF+H SA+ G +L EGQ V ++ V+ + Sbjct: 1 MQTGTVKWFNAEKGFGFIEVE----GGSDVFVHFSAIQGEGFKSLDEGQRVEFNVVEGN- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQAENVVKL 66 >gi|308049339|ref|YP_003912905.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM 9799] gi|307631529|gb|ADN75831.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM 9799] Length = 69 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFIT + G DVF+H A+ G L EGQ V++D Q G Sbjct: 5 TGTVKWFNEDKGFGFITQD---NGGADVFVHFRAIQGDGFKTLAEGQQVSFDIEQG-PKG 60 Query: 64 KYSAENLKL 72 +A K+ Sbjct: 61 PQAANVTKI 69 >gi|86157661|ref|YP_464446.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|197123033|ref|YP_002134984.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|220917823|ref|YP_002493127.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|85774172|gb|ABC81009.1| cold-shock DNA-binding protein family [Anaeromyxobacter dehalogenans 2CP-C] gi|196172882|gb|ACG73855.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|219955677|gb|ACL66061.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI+ E G+DVF+H +A+ G L EG+ V +D Q Sbjct: 1 MALGTVKWFNDAKGYGFISQE----GGEDVFVHHTAIQMDGFRTLKEGERVEFDVTQG-P 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 KGLQAANV 63 >gi|147679090|ref|YP_001213305.1| cold shock proteins [Pelotomaculum thermopropionicum SI] gi|146275187|dbj|BAF60936.1| cold shock proteins [Pelotomaculum thermopropionicum SI] Length = 65 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V +D V+ A G Sbjct: 3 GKVKWFNQEKGYGFIERE----DGGDVFVHFSAIQEEGFKTLAEGQKVEFDIVEG-ARGP 57 Query: 65 YSAENLKL 72 +A +KL Sbjct: 58 QAANVIKL 65 >gi|190575401|ref|YP_001973246.1| putative cold shock protein [Stenotrophomonas maltophilia K279a] gi|194366737|ref|YP_002029347.1| cold-shock DNA-binding domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|254524874|ref|ZP_05136929.1| putative 'Cold-shock' DNA-binding domain protein [Stenotrophomonas sp. SKA14] gi|190013323|emb|CAQ46957.1| putative cold shock protein [Stenotrophomonas maltophilia K279a] gi|194349541|gb|ACF52664.1| cold-shock DNA-binding domain protein [Stenotrophomonas maltophilia R551-3] gi|219722465|gb|EED40990.1| putative 'Cold-shock' DNA-binding domain protein [Stenotrophomonas sp. SKA14] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+PE + DVF H SA+ S G +L EGQ VTYD Q Sbjct: 1 MPNGTVKWFNDAKGFGFISPE---DGSADVFAHFSAINSKGFRSLQEGQRVTYDVTQGPK 57 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 58 G--AQASNIT 65 >gi|326491571|dbj|BAJ94263.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 191 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI+P+ + +D+F+H+S++ + G +L EG++V + + D +G Sbjct: 8 KGTVKWFNDTKGFGFISPD---DGSEDLFVHQSSIKADGFRSLAEGEVVEFSVSEGD-DG 63 Query: 64 KYSAENLK 71 + A ++ Sbjct: 64 RTKAVDVT 71 >gi|327440173|dbj|BAK16538.1| cold shock protein [Solibacillus silvestris StLB046] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V ++ V + Sbjct: 1 MKQGTVKWFNSEKGFGFIELEGE----DDVFVHFSAIQGEGFKTLEEGQKVEFEVV-DGN 55 Query: 62 NGKYSAENLKL 72 G ++ +KL Sbjct: 56 RGPQASNVIKL 66 >gi|114778644|ref|ZP_01453460.1| cold shock protein [Mariprofundus ferrooxydans PV-1] gi|114551109|gb|EAU53670.1| cold shock protein [Mariprofundus ferrooxydans PV-1] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + + GDDVF+H SA+ + G +L EGQ V ++ ++ Sbjct: 1 MATGTVKWFNDTKGFGFIAQD---DGGDDVFVHFSAIQTDGFKSLQEGQKVEFEI-EDGQ 56 Query: 62 NGKYSAENLK 71 G A N+ Sbjct: 57 KGPQ-ARNVT 65 >gi|116696515|ref|YP_842091.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] gi|113531014|emb|CAJ97361.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] Length = 98 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N KG+GFI P+ GDD+F H S + + G +L E Q V ++ V+N Sbjct: 17 IMQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEIRADGFKSLQENQRVQFE-VKNG 72 Query: 61 ANGKYSAE 68 G +A Sbjct: 73 PKGLQAAN 80 >gi|312795894|ref|YP_004028816.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] gi|312167669|emb|CBW74672.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+G G+D+F H S + G +L E Q VTY+ V+ Sbjct: 1 METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRMDGFKSLQENQKVTYE-VKMGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|294500562|ref|YP_003564262.1| cold shock protein [Bacillus megaterium QM B1551] gi|295705915|ref|YP_003598990.1| cold shock protein [Bacillus megaterium DSM 319] gi|294350499|gb|ADE70828.1| cold shock protein [Bacillus megaterium QM B1551] gi|294803574|gb|ADF40640.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MTEGTVKWFNAEKGFGFIE----IEGGEDVFVHFSAIQGDGFKSLDEGQKVTFDIEQGQ- 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGAQAANVVK 65 >gi|261408402|ref|YP_003244643.1| cold-shock DNA-binding domain-containing protein [Paenibacillus sp. Y412MC10] gi|315648512|ref|ZP_07901611.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|329929384|ref|ZP_08283132.1| major cold shock protein CspA [Paenibacillus sp. HGF5] gi|261284865|gb|ACX66836.1| cold-shock DNA-binding domain protein [Paenibacillus sp. Y412MC10] gi|315276206|gb|EFU39552.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|328936471|gb|EGG32916.1| major cold shock protein CspA [Paenibacillus sp. HGF5] Length = 65 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI+ E G+DVF+H SA+ G +L EGQ V +D + + G Sbjct: 2 KGTVKWFNAEKGYGFISVE----GGEDVFVHFSAIQEEGFKSLEEGQAVEFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A KL Sbjct: 57 PQAANVTKL 65 >gi|56696164|ref|YP_166520.1| cold shock family protein [Ruegeria pomeroyi DSS-3] gi|56677901|gb|AAV94567.1| cold shock family protein [Ruegeria pomeroyi DSS-3] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H SAV +GL L + Q V+++ + + Sbjct: 1 MPTGTVKWFNATKGYGFIAPD---DGGKDVFVHISAVERSGLTGLADNQKVSFEML-DGR 56 Query: 62 NGKYSAENLKLV 73 +G+ A ++K + Sbjct: 57 DGRKMAGDIKPL 68 >gi|17987793|ref|NP_540427.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M] gi|62289409|ref|YP_221202.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|82699335|ref|YP_413909.1| ATP/GTP-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023660|ref|YP_001934428.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19] gi|225626929|ref|ZP_03784968.1| cold shock protein CSPA [Brucella ceti str. Cudo] gi|225851957|ref|YP_002732190.1| ATP/GTP-binding domain-containing protein [Brucella melitensis ATCC 23457] gi|237814894|ref|ZP_04593892.1| cold shock protein CSPA [Brucella abortus str. 2308 A] gi|254688721|ref|ZP_05151975.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus bv. 6 str. 870] gi|254693204|ref|ZP_05155032.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus bv. 3 str. Tulya] gi|254696849|ref|ZP_05158677.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus bv. 2 str. 86/8/59] gi|254701228|ref|ZP_05163056.1| ATP/GTP-binding site motif A, P-loop protein [Brucella suis bv. 5 str. 513] gi|254707848|ref|ZP_05169676.1| ATP/GTP-binding site motif A, P-loop protein [Brucella pinnipedialis M163/99/10] gi|254709571|ref|ZP_05171382.1| ATP/GTP-binding site motif A, P-loop protein [Brucella pinnipedialis B2/94] gi|254713013|ref|ZP_05174824.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti M644/93/1] gi|254716633|ref|ZP_05178444.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti M13/05/1] gi|254718601|ref|ZP_05180412.1| ATP/GTP-binding site motif A, P-loop protein [Brucella sp. 83/13] gi|254729754|ref|ZP_05188332.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus bv. 4 str. 292] gi|256031063|ref|ZP_05444677.1| ATP/GTP-binding site motif A, P-loop protein [Brucella pinnipedialis M292/94/1] gi|256044140|ref|ZP_05447047.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060557|ref|ZP_05450725.1| ATP/GTP-binding site motif A, P-loop protein [Brucella neotomae 5K33] gi|256112943|ref|ZP_05453851.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis bv. 3 str. Ether] gi|256159127|ref|ZP_05456948.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti M490/95/1] gi|256254466|ref|ZP_05460002.1| ATP/GTP-binding site motif A, P-loop protein [Brucella ceti B1/94] gi|256256968|ref|ZP_05462504.1| ATP/GTP-binding site motif A, P-loop protein [Brucella abortus bv. 9 str. C68] gi|256264533|ref|ZP_05467065.1| predicted protein [Brucella melitensis bv. 2 str. 63/9] gi|256368878|ref|YP_003106384.1| cold shock protein CspA [Brucella microti CCM 4915] gi|260168194|ref|ZP_05755005.1| cold shock protein CspA [Brucella sp. F5/99] gi|260545840|ref|ZP_05821581.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC 8038] gi|260563497|ref|ZP_05833983.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv. 1 str. 16M] gi|260754199|ref|ZP_05866547.1| cold shock protein cspA [Brucella abortus bv. 6 str. 870] gi|260757419|ref|ZP_05869767.1| cold shock protein cspA [Brucella abortus bv. 4 str. 292] gi|260761244|ref|ZP_05873587.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883224|ref|ZP_05894838.1| cold shock protein cspA [Brucella abortus bv. 9 str. C68] gi|261213446|ref|ZP_05927727.1| cold shock protein cspA [Brucella abortus bv. 3 str. Tulya] gi|261218434|ref|ZP_05932715.1| predicted protein [Brucella ceti M13/05/1] gi|261221638|ref|ZP_05935919.1| cold shock protein cspA [Brucella ceti B1/94] gi|261315336|ref|ZP_05954533.1| cold shock protein cspA [Brucella pinnipedialis M163/99/10] gi|261317099|ref|ZP_05956296.1| predicted protein [Brucella pinnipedialis B2/94] gi|261320717|ref|ZP_05959914.1| cold shock protein cspA [Brucella ceti M644/93/1] gi|261324552|ref|ZP_05963749.1| predicted protein [Brucella neotomae 5K33] gi|261751767|ref|ZP_05995476.1| predicted protein [Brucella suis bv. 5 str. 513] gi|261757654|ref|ZP_06001363.1| ATP/GTP-binding site domain-containing protein A [Brucella sp. F5/99] gi|265983577|ref|ZP_06096312.1| cold shock protein cspA [Brucella sp. 83/13] gi|265988135|ref|ZP_06100692.1| cold shock protein cspA [Brucella pinnipedialis M292/94/1] gi|265990551|ref|ZP_06103108.1| cold shock protein cspA [Brucella melitensis bv. 1 str. Rev.1] gi|265994381|ref|ZP_06106938.1| cold shock protein cspA [Brucella melitensis bv. 3 str. Ether] gi|265997600|ref|ZP_06110157.1| cold shock protein cspA [Brucella ceti M490/95/1] gi|294851801|ref|ZP_06792474.1| cold shock protein [Brucella sp. NVSL 07-0026] gi|297247821|ref|ZP_06931539.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv. 5 str. B3196] gi|306839881|ref|ZP_07472679.1| cold shock protein CSPA [Brucella sp. NF 2653] gi|306842293|ref|ZP_07474955.1| cold shock protein CSPA [Brucella sp. BO2] gi|306845051|ref|ZP_07477632.1| cold shock protein CSPA [Brucella sp. BO1] gi|17983518|gb|AAL52691.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M] gi|62195541|gb|AAX73841.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|82615436|emb|CAJ10405.1| ATP/GTP-binding site motif A (P-loop):Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus 2308] gi|189019232|gb|ACD71954.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19] gi|225618586|gb|EEH15629.1| cold shock protein CSPA [Brucella ceti str. Cudo] gi|225640322|gb|ACO00236.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis ATCC 23457] gi|237789731|gb|EEP63941.1| cold shock protein CSPA [Brucella abortus str. 2308 A] gi|255999036|gb|ACU47435.1| cold shock protein CspA [Brucella microti CCM 4915] gi|260097247|gb|EEW81122.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC 8038] gi|260153513|gb|EEW88605.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv. 1 str. 16M] gi|260667737|gb|EEX54677.1| cold shock protein cspA [Brucella abortus bv. 4 str. 292] gi|260671676|gb|EEX58497.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59] gi|260674307|gb|EEX61128.1| cold shock protein cspA [Brucella abortus bv. 6 str. 870] gi|260872752|gb|EEX79821.1| cold shock protein cspA [Brucella abortus bv. 9 str. C68] gi|260915053|gb|EEX81914.1| cold shock protein cspA [Brucella abortus bv. 3 str. Tulya] gi|260920222|gb|EEX86875.1| cold shock protein cspA [Brucella ceti B1/94] gi|260923523|gb|EEX90091.1| predicted protein [Brucella ceti M13/05/1] gi|261293407|gb|EEX96903.1| cold shock protein cspA [Brucella ceti M644/93/1] gi|261296322|gb|EEX99818.1| predicted protein [Brucella pinnipedialis B2/94] gi|261300532|gb|EEY04029.1| predicted protein [Brucella neotomae 5K33] gi|261304362|gb|EEY07859.1| cold shock protein cspA [Brucella pinnipedialis M163/99/10] gi|261737638|gb|EEY25634.1| ATP/GTP-binding site domain-containing protein A [Brucella sp. F5/99] gi|261741520|gb|EEY29446.1| predicted protein [Brucella suis bv. 5 str. 513] gi|262552068|gb|EEZ08058.1| cold shock protein cspA [Brucella ceti M490/95/1] gi|262765494|gb|EEZ11283.1| cold shock protein cspA [Brucella melitensis bv. 3 str. Ether] gi|263001335|gb|EEZ13910.1| cold shock protein cspA [Brucella melitensis bv. 1 str. Rev.1] gi|263094866|gb|EEZ18604.1| predicted protein [Brucella melitensis bv. 2 str. 63/9] gi|264660332|gb|EEZ30593.1| cold shock protein cspA [Brucella pinnipedialis M292/94/1] gi|264662169|gb|EEZ32430.1| cold shock protein cspA [Brucella sp. 83/13] gi|294820390|gb|EFG37389.1| cold shock protein [Brucella sp. NVSL 07-0026] gi|297174990|gb|EFH34337.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv. 5 str. B3196] gi|306274683|gb|EFM56472.1| cold shock protein CSPA [Brucella sp. BO1] gi|306287601|gb|EFM59052.1| cold shock protein CSPA [Brucella sp. BO2] gi|306405067|gb|EFM61348.1| cold shock protein CSPA [Brucella sp. NF 2653] gi|326408455|gb|ADZ65520.1| ATP/GTP-binding site motif A (P-loop) [Brucella melitensis M28] gi|326538172|gb|ADZ86387.1| ATP/GTP-binding site motif A, P-loop protein [Brucella melitensis M5-90] Length = 69 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI P+ + DVF+H SAV AGL +L EGQ V Y+ V + Sbjct: 1 MANGTVKFFNSTKGFGFIQPD---DGSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKSAAANLE 67 >gi|87119411|ref|ZP_01075308.1| cold-shock DNA-binding domain protein [Marinomonas sp. MED121] gi|86164887|gb|EAQ66155.1| cold-shock DNA-binding domain protein [Marinomonas sp. MED121] Length = 97 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E G DVF+H A+ G L EGQ VT++ Q Sbjct: 35 GIVKWFNDEKGFGFIERE----GGPDVFVHFRAINGTGRRTLQEGQKVTFEVTQGQKG-- 88 Query: 65 YSAENLKLV 73 AEN+ +V Sbjct: 89 PQAENVSIV 97 >gi|307545830|ref|YP_003898309.1| cold shock protein CspA [Halomonas elongata DSM 2581] gi|307217854|emb|CBV43124.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas elongata DSM 2581] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ ++GDD+F H S + + G +L +GQ V++D Q Sbjct: 1 MATGTVKWFNDTKGFGFISPD---DNGDDLFAHFSEIQAEGFKSLQDGQKVSFDVTQGKK 57 Query: 62 NGKYSAENLKLV 73 A N+K+V Sbjct: 58 G--LQASNIKVV 67 >gi|254391125|ref|ZP_05006332.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|294814384|ref|ZP_06773027.1| Cold shock-like protein [Streptomyces clavuligerus ATCC 27064] gi|326442775|ref|ZP_08217509.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|197704819|gb|EDY50631.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|294326983|gb|EFG08626.1| Cold shock-like protein [Streptomyces clavuligerus ATCC 27064] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E Q+V +D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINATGFRSLEENQVVNFDVTQGPK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENVS 65 >gi|194016016|ref|ZP_03054631.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|194012371|gb|EDW21938.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MEQGTVKWFNAEKGFGFIERE----EGDDVFVHFSAIQGDGFKSLDEGQKVTFDVEQGSR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--AQAANVQ 64 >gi|116255743|ref|YP_771576.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|209546040|ref|YP_002277930.1| cold-shock protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|241666510|ref|YP_002984594.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115260391|emb|CAK03495.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|209538897|gb|ACI58830.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240861967|gb|ACS59632.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 69 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G D F+H SAV AG+ + EGQ + Y+ +++ Sbjct: 1 MTTGTVKWFNSTKGFGFIQPD---DGGADAFVHISAVERAGMREIVEGQKIGYELERDNK 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKMSACNLQ 67 >gi|20803889|emb|CAD31467.1| PROBABLE TRANSCRIPTION REGULATOR COLD SHOCK PROTEIN [Mesorhizobium loti R7A] Length = 70 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AGL NL +GQ + Y+ Q+ Sbjct: 1 MATGTVKWFNSTKGFGFIQPD---DDGQDVFVHISAVERAGLSNLVDGQKIKYEIEQDRR 57 Query: 62 NGKYSAENLKLV 73 +GK SA +L V Sbjct: 58 SGKSSAGSLSKV 69 >gi|16974807|pdb|1HZC|A Chain A, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability gi|16974808|pdb|1HZC|B Chain B, Bacillus Caldolyticus Cold-Shock Protein Mutants To Study Determinants Of Protein Stability Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI E G DVF+H +A+ G L EGQ V+++ VQ + Sbjct: 1 MQEGKVKWFNNEKGYGFIEVE----GGSDVFVHFTAIQGEGFKTLEEGQAVSFEIVQGN- 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGPQAANVVK 65 >gi|329727663|gb|EGG64119.1| major cold shock protein CspA [Staphylococcus aureus subsp. aureus 21172] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG VF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 MKQGTVKWFNAEKGFGFIEVEGENN----VFVHFSAINQDGYKSLEEGQAVEFEVVEGD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANVVKL 66 >gi|312200500|ref|YP_004020561.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] gi|311231836|gb|ADP84691.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ + G +L EGQ V +D Q Sbjct: 1 MASGTVKWFNSEKGFGFIAVDG---GGPDVFVHYSAIQTDGFRSLDEGQRVEFDIEQGQK 57 Query: 62 NGKYS 66 + Sbjct: 58 GPQAG 62 >gi|237800557|ref|ZP_04589018.1| cold shock domain family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023417|gb|EGI03474.1| cold shock domain family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 96 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G + +D+F H SA+ G L GQ V++D +Q Sbjct: 1 MLNGKVKWFNNAKGYGFILEDGKPD--EDLFAHYSAIQMEGYKTLKAGQPVSFDIIQGPK 58 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 59 G--NHAVNIS 66 >gi|199598334|ref|ZP_03211754.1| Cold shock protein [Lactobacillus rhamnosus HN001] gi|258508067|ref|YP_003170818.1| CspA family cold shock protein_ [Lactobacillus rhamnosus GG] gi|258539340|ref|YP_003173839.1| Cold shock protein [Lactobacillus rhamnosus Lc 705] gi|199590787|gb|EDY98873.1| Cold shock protein [Lactobacillus rhamnosus HN001] gi|257147994|emb|CAR86967.1| Cold shock protein [Lactobacillus rhamnosus GG] gi|257151016|emb|CAR89988.1| Cold shock protein [Lactobacillus rhamnosus Lc 705] gi|259649389|dbj|BAI41551.1| cold shock protein [Lactobacillus rhamnosus GG] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFIT E G DVF+H SA+ G L EGQ VT++ +D Sbjct: 1 MEHGTVKWFNAEKGYGFITRE----DGSDVFVHFSAIQGEGYKTLEEGQAVTFEVEDSDR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--PQAVNV 63 >gi|126650394|ref|ZP_01722622.1| cold shock protein [Bacillus sp. B14905] gi|126593044|gb|EAZ87026.1| cold shock protein [Bacillus sp. B14905] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G DVF H SA+ G +L EGQ V + ++ Sbjct: 1 MTQGTVKWFNSEKGFGFIEVE----GGQDVFAHFSAIQGEGFKSLEEGQKVEFTI-EDGQ 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANIVKL 66 >gi|254461151|ref|ZP_05074567.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium HTCC2083] gi|206677740|gb|EDZ42227.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacteraceae bacterium HTCC2083] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+DVF+H SAV +GL L + Q ++++ ++ Sbjct: 1 MPNGTVKWFNTTKGFGFIEPEG---GGNDVFVHISAVERSGLTGLADNQKISFEL-EDGR 56 Query: 62 NGKYSAENLKLV 73 +G+ A NL L+ Sbjct: 57 DGRQMAANLALL 68 >gi|115376123|ref|ZP_01463367.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|310824812|ref|YP_003957170.1| Cold shock family protein, CspA [Stigmatella aurantiaca DW4/3-1] gi|115366846|gb|EAU65837.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|309397884|gb|ADO75343.1| Cold shock family protein, CspA [Stigmatella aurantiaca DW4/3-1] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+T +G G+DVF H SA+ G L EGQ V++D + Sbjct: 1 MATGTVKWFNDAKGFGFLTQDG---GGEDVFCHHSAINMDGFRTLAEGQKVSFDVTRGPK 57 Query: 62 NGKYSAENLK 71 A+N++ Sbjct: 58 G--LQAQNVR 65 >gi|313902955|ref|ZP_07836350.1| cold-shock DNA-binding protein family [Thermaerobacter subterraneus DSM 13965] gi|313466679|gb|EFR62198.1| cold-shock DNA-binding protein family [Thermaerobacter subterraneus DSM 13965] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KGYGFIT + + DVF+H SA+ AG L EGQ VT+D V+ + Sbjct: 2 TGTVKWFNAEKGYGFITRD---DGQGDVFVHFSAIVGAGYRTLEEGQKVTFDVVEGEKGP 58 Query: 64 KYSAENLKLV 73 K A+N+ ++ Sbjct: 59 K--AQNVIVL 66 >gi|309389742|gb|ADO77622.1| cold-shock DNA-binding protein family [Halanaerobium praevalens DSM 2228] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 MV+ G++KW++ KGYGFI E GDDVF+H SA+ G L EGQ V ++ V+ D Sbjct: 1 MVYTGNVKWFDEKKGYGFIERE----DGDDVFVHFSALQQEGFKTLEEGQEVEFEIVEGD 56 Query: 61 ANGKYSAENLKLV 73 AEN++++ Sbjct: 57 RG--PQAENVEVI 67 >gi|308178448|ref|YP_003917854.1| cold shock protein [Arthrobacter arilaitensis Re117] gi|307745911|emb|CBT76883.1| cold shock protein [Arthrobacter arilaitensis Re117] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI P+ DVF H SA+ + G L EGQ V ++ V+ Sbjct: 1 MATGIVKWFNAEKGFGFIAPDSGD---PDVFAHFSAIQTQGFRTLDEGQKVEFEVVEG-P 56 Query: 62 NGKYSAE 68 G +A+ Sbjct: 57 KGLQAAD 63 >gi|297565513|ref|YP_003684485.1| cold-shock DNA-binding domain-containing protein [Meiothermus silvanus DSM 9946] gi|296849962|gb|ADH62977.1| cold-shock DNA-binding domain protein [Meiothermus silvanus DSM 9946] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI E G DVF+H SA+ + G L EGQ V ++ Sbjct: 1 MKTGTVKWFNAEKGYGFIAQE----DGPDVFVHYSAIETDGFRTLQEGQRVQFEVEPGKN 56 Query: 62 NGKYSAENLK 71 A ++ Sbjct: 57 GKGPQAAKVR 66 >gi|116335083|ref|YP_802578.1| cold shock protein [Candidatus Carsonella ruddii PV] gi|116235364|dbj|BAF35212.1| cold shock protein [Candidatus Carsonella ruddii PV] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ + GDD+F+H S + G +L +GQ V++D Q Sbjct: 1 MSNGTVKWFNDTKGFGFISPD---DGGDDLFVHFSEIRVDGFKSLQDGQRVSFDVTQGKK 57 Query: 62 NGKYSAENLKLV 73 A N+K++ Sbjct: 58 G--LQASNVKVI 67 >gi|110678721|ref|YP_681728.1| cold shock protein CspA-related protein, putative [Roseobacter denitrificans OCh 114] gi|109454837|gb|ABG31042.1| cold shock protein CspA-related protein, putative [Roseobacter denitrificans OCh 114] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G DVF+H SAV AGL L + Q VT+D + Sbjct: 1 MATGTVKWFNATKGFGFIAPDG---GSKDVFVHISAVERAGLTGLNDDQKVTFDI-EAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESASNLAL 67 >gi|55980144|ref|YP_143441.1| cold shock protein [Thermus thermophilus HB8] gi|291463422|pdb|3A0J|A Chain A, Crystal Structure Of Cold Shock Protein 1 From Thermus Thermophilus Hb8 gi|291463423|pdb|3A0J|B Chain B, Crystal Structure Of Cold Shock Protein 1 From Thermus Thermophilus Hb8 gi|27374959|dbj|BAC53777.1| cold shock protein homolog [Thermus thermophilus] gi|55771557|dbj|BAD69998.1| cold shock protein [Thermus thermophilus HB8] Length = 73 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI EG T DVF+H +A+ + G L EG +VT+D Sbjct: 1 MQKGRVKWFNAEKGYGFIEREGDT----DVFVHYTAINAKGFRTLNEGDIVTFDVEPGRN 56 Query: 62 NGKYSAENLKLVPKS 76 A N+ +V + Sbjct: 57 GKGPQAVNVTVVEPA 71 >gi|238789312|ref|ZP_04633099.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641] gi|238722644|gb|EEQ14297.1| Cold shock-like protein cspE [Yersinia frederiksenii ATCC 33641] Length = 84 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y Q+ Sbjct: 19 KTGQVKWFNEAKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPR 74 Query: 63 GKYSAENLKL 72 G +A + L Sbjct: 75 GPAAANVIAL 84 >gi|254461497|ref|ZP_05074913.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium HTCC2083] gi|206678086|gb|EDZ42573.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacteraceae bacterium HTCC2083] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G DVF+H SAV +GL L + Q VT+D + Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVTFDI-EPGR 56 Query: 62 NGKYSAENLKL 72 +G+ +A N+ L Sbjct: 57 DGREAAINIAL 67 >gi|220918462|ref|YP_002493766.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956316|gb|ACL66700.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +G G+DVF H +A+ + G +L EGQ V +D + Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQAEGFRSLAEGQKVEFDVTKGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--LQAANVRPI 67 >gi|146306295|ref|YP_001186760.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina ymp] gi|145574496|gb|ABP84028.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp] Length = 205 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + +Q D Sbjct: 135 RETGTVKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRVLIEGQRVEFSVMQRDK 190 Query: 62 NGKYSAENL 70 AE++ Sbjct: 191 G--LQAEDV 197 >gi|81428762|ref|YP_395762.1| cold shock protein CspA family protein [Lactobacillus sakei subsp. sakei 23K] gi|78610404|emb|CAI55454.1| Similar to cold shock protein, CspA family [Lactobacillus sakei subsp. sakei 23K] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFIT E G DVF H SA+ G +L EGQ V++D V++ Sbjct: 1 MNNGTVKWFNADKGFGFIT----GEDGKDVFAHFSAIQGDGYKSLDEGQAVSFD-VEDSD 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQATNIVKL 66 >gi|209884203|ref|YP_002288060.1| hypothetical protein OCAR_5060 [Oligotropha carboxidovorans OM5] gi|209872399|gb|ACI92195.1| conserved domain protein [Oligotropha carboxidovorans OM5] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P G G DVF+H SAV AGL +L EGQ + ++ V N Sbjct: 1 MAKGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLSSLNEGQTIEFEEVAN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKV 66 >gi|322833919|ref|YP_004213946.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|321169120|gb|ADW74819.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] Length = 69 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA++S G L EGQ V ++ N A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAISSNGFKTLAEGQRVEFEIT-NGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|294499464|ref|YP_003563164.1| cold shock protein [Bacillus megaterium QM B1551] gi|295704814|ref|YP_003597889.1| cold shock protein [Bacillus megaterium DSM 319] gi|294349401|gb|ADE69730.1| cold shock protein [Bacillus megaterium QM B1551] gi|294802473|gb|ADF39539.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ VT+D Q Sbjct: 1 MEQGKVKWFNAEKGFGFIERE----GGDDVFVHFSAIQSEGFKSLDEGQAVTFDVEQGQ- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|258652266|ref|YP_003201422.1| cold-shock DNA-binding domain-containing protein [Nakamurella multipartita DSM 44233] gi|258555491|gb|ACV78433.1| cold-shock DNA-binding domain protein [Nakamurella multipartita DSM 44233] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI+P+ + DVF+H SA++ G +L EGQ V ++ Q+ Sbjct: 1 MAQGTVKWFNAEKGYGFISPD---DGSGDVFVHYSAISGTGYKSLEEGQRVNFEVEQS-P 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPQA 61 >gi|149915750|ref|ZP_01904275.1| glycine dehydrogenase [Roseobacter sp. AzwK-3b] gi|149810332|gb|EDM70177.1| glycine dehydrogenase [Roseobacter sp. AzwK-3b] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G DVF+H SAV +GL L + Q VTYD V+ Sbjct: 1 MANGTVKWFNSTKGFGFIAPET---GGKDVFVHISAVERSGLTGLADDQKVTYD-VEAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL+L Sbjct: 57 DGRESATNLQL 67 >gi|148259024|ref|YP_001233151.1| cold-shock DNA-binding domain-containing protein [Acidiphilium cryptum JF-5] gi|326402151|ref|YP_004282232.1| hypothetical protein ACMV_00030 [Acidiphilium multivorum AIU301] gi|146400705|gb|ABQ29232.1| putative cold-shock DNA-binding domain protein [Acidiphilium cryptum JF-5] gi|325049012|dbj|BAJ79350.1| hypothetical protein ACMV_00030 [Acidiphilium multivorum AIU301] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + G DVF+H +AV +AG+ L EGQ ++Y+ Q Sbjct: 1 MAIGTVKWFNTTKGFGFIVP---QDGGKDVFVHITAVQAAGMRGLNEGQKISYEVTQE-- 55 Query: 62 NGKYSAENLKLV 73 GK +A NLK V Sbjct: 56 RGKAAATNLKAV 67 >gi|69247317|ref|ZP_00604299.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] gi|257879979|ref|ZP_05659632.1| cold-shock protein [Enterococcus faecium 1,230,933] gi|257883090|ref|ZP_05662743.1| cold-shock protein [Enterococcus faecium 1,231,502] gi|257884117|ref|ZP_05663770.1| cold-shock protein [Enterococcus faecium 1,231,501] gi|257890488|ref|ZP_05670141.1| cold-shock protein [Enterococcus faecium 1,231,410] gi|257894415|ref|ZP_05674068.1| cold-shock protein [Enterococcus faecium 1,231,408] gi|258614362|ref|ZP_05712132.1| cold-shock domain-contain protein [Enterococcus faecium DO] gi|260558929|ref|ZP_05831116.1| cold-shock protein [Enterococcus faecium C68] gi|261209452|ref|ZP_05923815.1| cold-shock protein [Enterococcus faecium TC 6] gi|289567727|ref|ZP_06448016.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF] gi|293553822|ref|ZP_06674437.1| cold-shock protein [Enterococcus faecium E1039] gi|293559767|ref|ZP_06676287.1| cold shock protein [Enterococcus faecium E1162] gi|293571661|ref|ZP_06682682.1| cold-shock protein [Enterococcus faecium E980] gi|294616363|ref|ZP_06696156.1| cold-shock protein [Enterococcus faecium E1636] gi|294619946|ref|ZP_06699319.1| cold shock protein [Enterococcus faecium E1679] gi|294622017|ref|ZP_06701160.1| cold shock protein [Enterococcus faecium U0317] gi|314940163|ref|ZP_07847341.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|314942420|ref|ZP_07849263.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|314950182|ref|ZP_07853467.1| major cold shock protein CspA [Enterococcus faecium TX0082] gi|314952304|ref|ZP_07855315.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|314994253|ref|ZP_07859556.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|314997168|ref|ZP_07862154.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|68194887|gb|EAN09358.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] gi|257814207|gb|EEV42965.1| cold-shock protein [Enterococcus faecium 1,230,933] gi|257818748|gb|EEV46076.1| cold-shock protein [Enterococcus faecium 1,231,502] gi|257819955|gb|EEV47103.1| cold-shock protein [Enterococcus faecium 1,231,501] gi|257826848|gb|EEV53474.1| cold-shock protein [Enterococcus faecium 1,231,410] gi|257830794|gb|EEV57401.1| cold-shock protein [Enterococcus faecium 1,231,408] gi|260075037|gb|EEW63352.1| cold-shock protein [Enterococcus faecium C68] gi|260076580|gb|EEW64344.1| cold-shock protein [Enterococcus faecium TC 6] gi|289160477|gb|EFD08488.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF] gi|291590877|gb|EFF22593.1| cold-shock protein [Enterococcus faecium E1636] gi|291593803|gb|EFF25304.1| cold shock protein [Enterococcus faecium E1679] gi|291598407|gb|EFF29481.1| cold shock protein [Enterococcus faecium U0317] gi|291602028|gb|EFF32265.1| cold-shock protein [Enterococcus faecium E1039] gi|291606250|gb|EFF35664.1| cold shock protein [Enterococcus faecium E1162] gi|291608331|gb|EFF37632.1| cold-shock protein [Enterococcus faecium E980] gi|313588742|gb|EFR67587.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|313591340|gb|EFR70185.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|313595563|gb|EFR74408.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|313598820|gb|EFR77665.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|313640602|gb|EFS05182.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|313643492|gb|EFS08072.1| major cold shock protein CspA [Enterococcus faecium TX0082] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFIT E+G+DVF+H SA+ G L EGQ VT+D + Sbjct: 1 METGTVKWFNSEKGFGFIT----AENGNDVFVHFSAIQGDGFKTLEEGQAVTFDVEEGQR 56 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 57 G--PQATNVT 64 >gi|297537796|ref|YP_003673565.1| cold-shock DNA-binding domain-containing protein [Methylotenera sp. 301] gi|297257143|gb|ADI28988.1| cold-shock DNA-binding domain protein [Methylotenera sp. 301] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H SA+ AG +L EGQ V+++ + Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVEAGYKSLKEGQRVSFEVT-DGP 56 Query: 62 NGKYSAENLK 71 GK A N++ Sbjct: 57 KGKQ-ASNIQ 65 >gi|295696398|ref|YP_003589636.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] gi|295412000|gb|ADG06492.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] Length = 65 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI E G DVF+H SA+ G +L EGQLV +D V+ A G Sbjct: 2 QGRVKWFNAEKGYGFIERE----DGGDVFVHFSAIQQDGFKSLEEGQLVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +K+ Sbjct: 57 PQAANVVKV 65 >gi|238028419|ref|YP_002912650.1| Cold shock transcription regulator protein [Burkholderia glumae BGR1] gi|330818078|ref|YP_004361783.1| Cold shock transcription regulator protein [Burkholderia gladioli BSR3] gi|237877613|gb|ACR29946.1| Cold shock transcription regulator protein [Burkholderia glumae BGR1] gi|327370471|gb|AEA61827.1| Cold shock transcription regulator protein [Burkholderia gladioli BSR3] Length = 73 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ VQ Sbjct: 7 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQKVSFEVVQGPK 63 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 64 G--KQASNIQ 71 >gi|268590420|ref|ZP_06124641.1| conserved domain protein [Providencia rettgeri DSM 1131] gi|291314334|gb|EFE54787.1| conserved domain protein [Providencia rettgeri DSM 1131] Length = 69 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE + DVF+H SA+ G L EGQ V ++ + A G Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIMGDGFKTLAEGQKVEFEITEG-AKG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PSAANVIPL 69 >gi|167747330|ref|ZP_02419457.1| hypothetical protein ANACAC_02047 [Anaerostipes caccae DSM 14662] gi|167653308|gb|EDR97437.1| hypothetical protein ANACAC_02047 [Anaerostipes caccae DSM 14662] Length = 91 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFIT E + G+DVF+H S +A+ G +L +GQ VT++ Q + Sbjct: 25 MNNGTVKWFNSTKGFGFITNEST---GEDVFVHFSGIAAEGFKSLEDGQKVTFETTQGNR 81 Query: 62 NGKYSAENL 70 A N+ Sbjct: 82 G--LQAVNV 88 >gi|89071112|ref|ZP_01158315.1| cold shock family protein [Oceanicola granulosus HTCC2516] gi|89043360|gb|EAR49581.1| cold shock family protein [Oceanicola granulosus HTCC2516] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI PE G DVF+H SAV AGL L + Q VTYD V+ Sbjct: 1 MAKGTVKWFNSTKGFGFIAPET---GGKDVFVHISAVERAGLTGLADDQKVTYD-VEAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N++L Sbjct: 57 DGRESAVNIQL 67 >gi|326523669|dbj|BAJ93005.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 231 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI+PE + +D+F+H+SA+ S G +L E +V +D + D +G Sbjct: 6 KGTVKWFNVTKGFGFISPE---DGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGD-DG 61 Query: 64 KYSAENLK 71 + A ++ Sbjct: 62 RTKASDVT 69 >gi|330975335|gb|EGH75401.1| cold-shock protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 202 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 190 LQAEDVIAALPR 201 >gi|330968898|gb|EGH68964.1| cold-shock protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 202 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 190 LQAEDVIAALPR 201 >gi|330964818|gb|EGH65078.1| cold-shock protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 202 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 190 LQAEDVIAALPR 201 >gi|330959259|gb|EGH59519.1| cold-shock protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 189 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 122 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 176 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 177 LQAEDVIAALPR 188 >gi|330950615|gb|EGH50875.1| cold-shock protein [Pseudomonas syringae Cit 7] Length = 202 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 190 LQAEDVIAALPR 201 >gi|330896121|gb|EGH28342.1| cold-shock protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 202 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 190 LQAEDVIAALPR 201 >gi|312962766|ref|ZP_07777254.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] gi|311282983|gb|EFQ61576.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] Length = 200 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 133 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 187 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 188 LQAEDVIAALPR 199 >gi|289674663|ref|ZP_06495553.1| cold-shock protein [Pseudomonas syringae pv. syringae FF5] Length = 202 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 190 LQAEDVIAALPR 201 >gi|257869999|ref|ZP_05649652.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2] gi|257804163|gb|EEV32985.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ E G DVF+H SA+ G L EGQ VT+D ++D Sbjct: 1 MEQGTVKWFNAEKGFGFISRE----DGTDVFVHFSAIQGEGFKTLEEGQAVTFDVEESDR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--PQAVNV 63 >gi|257487017|ref|ZP_05641058.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488215|ref|ZP_07006251.1| DNA-binding cold-shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157273|gb|EFH98357.1| DNA-binding cold-shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330988962|gb|EGH87065.1| cold-shock protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 202 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 190 LQAEDVIAALPR 201 >gi|237800212|ref|ZP_04588673.1| cold-shock protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023069|gb|EGI03126.1| cold-shock protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 202 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 190 LQAEDVIAALPR 201 >gi|213969178|ref|ZP_03397317.1| Cold-shock DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301384826|ref|ZP_07233244.1| cold-shock protein [Pseudomonas syringae pv. tomato Max13] gi|302130616|ref|ZP_07256606.1| cold-shock protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926176|gb|EEB59732.1| Cold-shock DNA-binding protein [Pseudomonas syringae pv. tomato T1] Length = 202 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 135 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 189 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 190 LQAEDVIAALPR 201 >gi|70732095|ref|YP_261851.1| cold-shock domain-contain protein [Pseudomonas fluorescens Pf-5] gi|68346394|gb|AAY94000.1| cold-shock domain family protein [Pseudomonas fluorescens Pf-5] Length = 201 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 134 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 188 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 189 LQAEDVIAALPR 200 >gi|77460636|ref|YP_350143.1| cold-shock DNA-binding protein [Pseudomonas fluorescens Pf0-1] gi|77384639|gb|ABA76152.1| putative cold shock protein [Pseudomonas fluorescens Pf0-1] Length = 200 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 133 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 187 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 188 LQAEDVIAALPR 199 >gi|328957164|ref|YP_004374550.1| cold-shock protein [Carnobacterium sp. 17-4] gi|328673488|gb|AEB29534.1| cold-shock protein [Carnobacterium sp. 17-4] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG+ DDVF+H SA+ S G +L EGQ VT+D + + Sbjct: 1 MEQGTVKWFNAEKGFGFIEREGA----DDVFVHFSAIQSEGFKSLEEGQAVTFDVEEGN- 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGPQAANV 63 >gi|331695978|ref|YP_004332217.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326950667|gb|AEA24364.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans CB1190] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGF+ P+G G DVF+H SA+ G +L EGQ V++D Q Sbjct: 1 MAEGTVKWFNSEKGYGFLAPDG---GGADVFVHYSAIQVNGYKSLDEGQRVSFDIEQGQK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|299534886|ref|ZP_07048215.1| cold shock protein [Lysinibacillus fusiformis ZC1] gi|298729731|gb|EFI70277.1| cold shock protein [Lysinibacillus fusiformis ZC1] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G DVF H SA+ G +L EGQ V + V+ Sbjct: 1 MTQGTVKWFNAEKGFGFIEVE----GGQDVFAHFSAIQGEGFKSLEEGQKVEF-TVEEGQ 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGPQAANIVKL 66 >gi|271961744|ref|YP_003335940.1| cold-shock DNA-binding domain-containing protein [Streptosporangium roseum DSM 43021] gi|270504919|gb|ACZ83197.1| putative cold-shock DNA-binding domain protein [Streptosporangium roseum DSM 43021] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+G DVF+H S + G +L +GQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAPDG---GAPDVFVHFSEIQGNGYRSLEDGQRVEFEITQGQK 57 Query: 62 NGKYS 66 + S Sbjct: 58 GPQAS 62 >gi|157692698|ref|YP_001487160.1| cold shock protein [Bacillus pumilus SAFR-032] gi|194016855|ref|ZP_03055468.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|157681456|gb|ABV62600.1| cold shock protein [Bacillus pumilus SAFR-032] gi|194011461|gb|EDW21030.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E GDDVF+H +A+ G +L EGQ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIEGDGYKSLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 RGPQAANVTKI 66 >gi|220933692|ref|YP_002512591.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995002|gb|ACL71604.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI PE E G DVF+H SA+ + G L EGQ V++ Q Sbjct: 1 MSTGIVKWFNESKGFGFIAPE---EGGADVFVHYSAIQAEGFKTLAEGQRVSFQVQQGPK 57 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 58 G--LQAVNVT 65 >gi|325267631|ref|ZP_08134283.1| cold shock transcription regulator protein [Kingella denitrificans ATCC 33394] gi|324980981|gb|EGC16641.1| cold shock transcription regulator protein [Kingella denitrificans ATCC 33394] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFDVTTGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|315659813|ref|ZP_07912672.1| cold-shock protein [Staphylococcus lugdunensis M23590] gi|315495101|gb|EFU83437.1| cold-shock protein [Staphylococcus lugdunensis M23590] Length = 82 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E G+DVF+H S +A G L EGQ V +D + Sbjct: 17 MNNGTVKWFNAEKGFGFIERE----DGNDVFVHFSGIAGEGYKTLEEGQKVEFDITEGQR 72 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 73 G--DQATNVVVM 82 >gi|229542762|ref|ZP_04431822.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] gi|229327182|gb|EEN92857.1| cold-shock DNA-binding domain protein [Bacillus coagulans 36D1] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI GDDVF+H SA+ G L EGQ VT+D Q + Sbjct: 1 MEQGTVKWFNGEKGFGFIE----RNGGDDVFVHFSAIQGEGFKTLDEGQKVTFDVEQG-S 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGPQAANV 63 >gi|72383861|ref|YP_293215.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72123204|gb|AAZ65358.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S V +G +L EGQ V+++ Q Sbjct: 1 MATGTVKWFNDAKGFGFITPD---DGGDDLFAHFSEVQGSGFKSLQEGQKVSFEVKQG-P 56 Query: 62 NGKYSA 67 GK +A Sbjct: 57 KGKQAA 62 >gi|50915110|ref|YP_061082.1| cold shock protein [Streptococcus pyogenes MGAS10394] gi|50904184|gb|AAT87899.1| Cold shock protein [Streptococcus pyogenes MGAS10394] Length = 69 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ TE+G DVF H SA+ ++G L EGQ V +D + Sbjct: 3 MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQTSGFKTLEEGQKVAFDVEEGQR 58 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 59 G--PQAVNITKL 68 >gi|108763346|ref|YP_634172.1| cold-shock protein CspE [Myxococcus xanthus DK 1622] gi|4193398|gb|AAD10037.1| CspE [Myxococcus xanthus] gi|108467226|gb|ABF92411.1| cold-shock protein CspE [Myxococcus xanthus DK 1622] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +G G+DVF H +A+ G L EGQ V ++ + Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLAEGQKVEFEVTRGPK 57 Query: 62 NGKYSAENLK 71 A+N++ Sbjct: 58 G--LQAQNVR 65 >gi|299132091|ref|ZP_07025286.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] gi|298592228|gb|EFI52428.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP KGYGFI P G G DVF+H SAV AGL +L EGQ + ++ V N Sbjct: 1 MAKGTVKWFNPTKGYGFIQPAG---GGKDVFVHISAVEKAGLTSLNEGQTIEFEEVAN-- 55 Query: 62 NGKYSAENLKL 72 GK SAENLK+ Sbjct: 56 RGKTSAENLKV 66 >gi|238920383|ref|YP_002933898.1| cold shock domain protein CspD, [Edwardsiella ictaluri 93-146] gi|238869952|gb|ACR69663.1| cold shock domain protein CspD, putative [Edwardsiella ictaluri 93-146] Length = 73 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P GDD+F H +A+ G L GQ V +D Sbjct: 1 METGTVKWFNNAKGFGFICP---ASGGDDIFAHYTAIQMEGYRTLKAGQQVQFDL-HTGP 56 Query: 62 NGKYSAENLKLVPKSSN 78 G ++ + ++ + ++ Sbjct: 57 KGNHANTIIPILSEPAS 73 >gi|226311237|ref|YP_002771131.1| cold shock protein [Brevibacillus brevis NBRC 100599] gi|226094185|dbj|BAH42627.1| cold shock protein [Brevibacillus brevis NBRC 100599] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KG+GFI + GDDVF+H SA+ G +L EGQ V +D V+N Sbjct: 1 MERGRVKWFNSEKGFGFIERD----GGDDVFVHFSAIQGEGYKSLDEGQEVEFD-VENGQ 55 Query: 62 NGKYSAENLKL 72 G + KL Sbjct: 56 RGPQATNVRKL 66 >gi|310815352|ref|YP_003963316.1| cold shock family protein [Ketogulonicigenium vulgare Y25] gi|308754087|gb|ADO42016.1| cold shock family protein [Ketogulonicigenium vulgare Y25] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+G DVF+H SAV +GL L + Q V +D ++ Sbjct: 1 MATGTVKWFNTTKGYGFIAPDG---GSKDVFVHISAVQRSGLEGLKDNQKVRFDI-ESSR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL + Sbjct: 57 DGRESAVNLSV 67 >gi|114767284|ref|ZP_01446124.1| cold shock family protein [Pelagibaca bermudensis HTCC2601] gi|114540590|gb|EAU43663.1| cold shock family protein [Roseovarius sp. HTCC2601] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V+YD + Sbjct: 1 MPSGTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYDLKEG-R 56 Query: 62 NGKYSAENLKLV 73 +G+ A +LK + Sbjct: 57 DGRMMASDLKPL 68 >gi|29375934|ref|NP_815088.1| cold-shock domain-contain protein [Enterococcus faecalis V583] gi|227518631|ref|ZP_03948680.1| cold-shock protein [Enterococcus faecalis TX0104] gi|227553162|ref|ZP_03983211.1| cold-shock protein [Enterococcus faecalis HH22] gi|229545951|ref|ZP_04434676.1| cold-shock protein [Enterococcus faecalis TX1322] gi|229550143|ref|ZP_04438868.1| cold-shock protein [Enterococcus faecalis ATCC 29200] gi|255972920|ref|ZP_05423506.1| cold-shock protein [Enterococcus faecalis T1] gi|255975974|ref|ZP_05426560.1| cold-shock protein [Enterococcus faecalis T2] gi|256618947|ref|ZP_05475793.1| cold-shock protein [Enterococcus faecalis ATCC 4200] gi|256762374|ref|ZP_05502954.1| cold-shock protein [Enterococcus faecalis T3] gi|256853004|ref|ZP_05558374.1| cold-shock domain-contain protein [Enterococcus faecalis T8] gi|256958857|ref|ZP_05563028.1| cold-shock protein [Enterococcus faecalis DS5] gi|256962049|ref|ZP_05566220.1| cold-shock protein [Enterococcus faecalis Merz96] gi|256965247|ref|ZP_05569418.1| cold-shock protein [Enterococcus faecalis HIP11704] gi|257078889|ref|ZP_05573250.1| cold-shock protein [Enterococcus faecalis JH1] gi|257082664|ref|ZP_05577025.1| cold-shock domain-containing protein [Enterococcus faecalis E1Sol] gi|257085373|ref|ZP_05579734.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1] gi|257086868|ref|ZP_05581229.1| cold-shock protein [Enterococcus faecalis D6] gi|257089761|ref|ZP_05584122.1| cold-shock protein [Enterococcus faecalis CH188] gi|257415977|ref|ZP_05592971.1| cold-shock protein [Enterococcus faecalis AR01/DG] gi|257419179|ref|ZP_05596173.1| cold-shock protein [Enterococcus faecalis T11] gi|257422743|ref|ZP_05599733.1| cold shock protein [Enterococcus faecalis X98] gi|293383071|ref|ZP_06628989.1| conserved domain protein [Enterococcus faecalis R712] gi|293387776|ref|ZP_06632320.1| conserved domain protein [Enterococcus faecalis S613] gi|294779559|ref|ZP_06744953.1| cold-shock DNA-binding domain protein [Enterococcus faecalis PC1.1] gi|300860884|ref|ZP_07106971.1| cold shock protein CspB [Enterococcus faecalis TUSoD Ef11] gi|307271144|ref|ZP_07552427.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|307273351|ref|ZP_07554596.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|307277496|ref|ZP_07558588.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|307279174|ref|ZP_07560232.1| major cold shock protein CspA [Enterococcus faecalis TX0860] gi|307288138|ref|ZP_07568148.1| major cold shock protein CspA [Enterococcus faecalis TX0109] gi|307291351|ref|ZP_07571235.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|312900628|ref|ZP_07759925.1| major cold shock protein CspA [Enterococcus faecalis TX0470] gi|312904110|ref|ZP_07763278.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|312907339|ref|ZP_07766330.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512] gi|312909956|ref|ZP_07768804.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516] gi|312952370|ref|ZP_07771245.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|29343396|gb|AAO81158.1| cold-shock domain family protein [Enterococcus faecalis V583] gi|227073926|gb|EEI11889.1| cold-shock protein [Enterococcus faecalis TX0104] gi|227177688|gb|EEI58660.1| cold-shock protein [Enterococcus faecalis HH22] gi|229304729|gb|EEN70725.1| cold-shock protein [Enterococcus faecalis ATCC 29200] gi|229308914|gb|EEN74901.1| cold-shock protein [Enterococcus faecalis TX1322] gi|255963938|gb|EET96414.1| cold-shock protein [Enterococcus faecalis T1] gi|255968846|gb|EET99468.1| cold-shock protein [Enterococcus faecalis T2] gi|256598474|gb|EEU17650.1| cold-shock protein [Enterococcus faecalis ATCC 4200] gi|256683625|gb|EEU23320.1| cold-shock protein [Enterococcus faecalis T3] gi|256711463|gb|EEU26501.1| cold-shock domain-contain protein [Enterococcus faecalis T8] gi|256949353|gb|EEU65985.1| cold-shock protein [Enterococcus faecalis DS5] gi|256952545|gb|EEU69177.1| cold-shock protein [Enterococcus faecalis Merz96] gi|256955743|gb|EEU72375.1| cold-shock protein [Enterococcus faecalis HIP11704] gi|256986919|gb|EEU74221.1| cold-shock protein [Enterococcus faecalis JH1] gi|256990694|gb|EEU77996.1| cold-shock domain-containing protein [Enterococcus faecalis E1Sol] gi|256993403|gb|EEU80705.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1] gi|256994898|gb|EEU82200.1| cold-shock protein [Enterococcus faecalis D6] gi|256998573|gb|EEU85093.1| cold-shock protein [Enterococcus faecalis CH188] gi|257157805|gb|EEU87765.1| cold-shock protein [Enterococcus faecalis ARO1/DG] gi|257161007|gb|EEU90967.1| cold-shock protein [Enterococcus faecalis T11] gi|257164567|gb|EEU94527.1| cold shock protein [Enterococcus faecalis X98] gi|291079736|gb|EFE17100.1| conserved domain protein [Enterococcus faecalis R712] gi|291082846|gb|EFE19809.1| conserved domain protein [Enterococcus faecalis S613] gi|294453349|gb|EFG21757.1| cold-shock DNA-binding domain protein [Enterococcus faecalis PC1.1] gi|295112888|emb|CBL31525.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76] gi|300849923|gb|EFK77673.1| cold shock protein CspB [Enterococcus faecalis TUSoD Ef11] gi|306497582|gb|EFM67115.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|306500874|gb|EFM70192.1| major cold shock protein CspA [Enterococcus faecalis TX0109] gi|306504299|gb|EFM73511.1| major cold shock protein CspA [Enterococcus faecalis TX0860] gi|306505761|gb|EFM74939.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|306509878|gb|EFM78903.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|306512642|gb|EFM81291.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|310626367|gb|EFQ09650.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512] gi|310629754|gb|EFQ13037.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|310632586|gb|EFQ15869.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|311289914|gb|EFQ68470.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516] gi|311292109|gb|EFQ70665.1| major cold shock protein CspA [Enterococcus faecalis TX0470] gi|315027392|gb|EFT39324.1| major cold shock protein CspA [Enterococcus faecalis TX2137] gi|315030013|gb|EFT41945.1| major cold shock protein CspA [Enterococcus faecalis TX4000] gi|315033768|gb|EFT45700.1| major cold shock protein CspA [Enterococcus faecalis TX0017] gi|315036854|gb|EFT48786.1| major cold shock protein CspA [Enterococcus faecalis TX0027] gi|315145675|gb|EFT89691.1| major cold shock protein CspA [Enterococcus faecalis TX2141] gi|315147863|gb|EFT91879.1| major cold shock protein CspA [Enterococcus faecalis TX4244] gi|315150659|gb|EFT94675.1| major cold shock protein CspA [Enterococcus faecalis TX0012] gi|315153333|gb|EFT97349.1| major cold shock protein CspA [Enterococcus faecalis TX0031] gi|315155889|gb|EFT99905.1| major cold shock protein CspA [Enterococcus faecalis TX0043] gi|315157943|gb|EFU01960.1| major cold shock protein CspA [Enterococcus faecalis TX0312] gi|315160238|gb|EFU04255.1| major cold shock protein CspA [Enterococcus faecalis TX0645] gi|315164246|gb|EFU08263.1| major cold shock protein CspA [Enterococcus faecalis TX1302] gi|315166660|gb|EFU10677.1| major cold shock protein CspA [Enterococcus faecalis TX1341] gi|315170056|gb|EFU14073.1| major cold shock protein CspA [Enterococcus faecalis TX1342] gi|315174446|gb|EFU18463.1| major cold shock protein CspA [Enterococcus faecalis TX1346] gi|315575578|gb|EFU87769.1| major cold shock protein CspA [Enterococcus faecalis TX0309B] gi|315578455|gb|EFU90646.1| major cold shock protein CspA [Enterococcus faecalis TX0630] gi|315579980|gb|EFU92171.1| major cold shock protein CspA [Enterococcus faecalis TX0309A] gi|323480602|gb|ADX80041.1| Major cold shock protein, CspB [Enterococcus faecalis 62] gi|327535008|gb|AEA93842.1| cold shock protein CspA [Enterococcus faecalis OG1RF] gi|329571445|gb|EGG53132.1| major cold shock protein CspA [Enterococcus faecalis TX1467] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT E+G+DVF+H SA+ G L EGQ VT++ + Sbjct: 1 METGTVKWFNSDKGFGFIT----AENGNDVFVHFSAIQGDGFKTLEEGQAVTFEIEEGQR 56 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 57 G--PQATNVT 64 >gi|33596619|ref|NP_884262.1| cold shock-like protein [Bordetella parapertussis 12822] gi|33601234|ref|NP_888794.1| cold shock-like protein [Bordetella bronchiseptica RB50] gi|33573320|emb|CAE37303.1| cold shock-like protein [Bordetella parapertussis] gi|33575669|emb|CAE32747.1| cold shock-like protein [Bordetella bronchiseptica RB50] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI P+ + D+F H S + S G +L E Q V+++ Q Sbjct: 1 MATGIVKWFNAEKGYGFIMPD---DGSKDLFAHYSEIRSEGYKSLQENQRVSFEVGQGPK 57 Query: 62 NGKYSAENLKLV 73 SA+N+K++ Sbjct: 58 G--PSAKNIKVI 67 >gi|332669153|ref|YP_004452161.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338191|gb|AEE44774.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFITP G G D+F+H SA+ G L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNAEKGYGFITPTG---GGQDLFVHFSAIQVDGYRTLEEGQQVDFEVGQGTK 57 Query: 62 NGKYSAENLKLV 73 AE ++ V Sbjct: 58 G--PQAEQVRPV 67 >gi|110679166|ref|YP_682173.1| cold shock family protein-related protein, putative [Roseobacter denitrificans OCh 114] gi|163735034|ref|ZP_02142471.1| cold shock family protein-related protein, putative [Roseobacter litoralis Och 149] gi|109455282|gb|ABG31487.1| cold shock family protein-related protein, putative [Roseobacter denitrificans OCh 114] gi|161391816|gb|EDQ16148.1| cold shock family protein-related protein, putative [Roseobacter litoralis Och 149] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PEG G DVF+H SAV +GL L + Q V ++ + Sbjct: 1 MPTGTVKWFNTTKGYGFIAPEG---GGSDVFVHISAVERSGLTGLADDQKVDFELTEG-R 56 Query: 62 NGKYSAENLKLV 73 +G+ A +LKL+ Sbjct: 57 DGRQMASDLKLL 68 >gi|72383849|ref|YP_293203.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72123192|gb|AAZ65346.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 67 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S V +G +L EGQ V+++ Q Sbjct: 1 MATGTVKWFNDTKGFGFITPD---DGGDDLFAHFSEVQGSGFKSLQEGQKVSFEVKQG-P 56 Query: 62 NGKYSA 67 GK +A Sbjct: 57 KGKQAA 62 >gi|83951672|ref|ZP_00960404.1| cold shock family protein [Roseovarius nubinhibens ISM] gi|83836678|gb|EAP75975.1| cold shock family protein [Roseovarius nubinhibens ISM] Length = 68 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H SAV +GL L + Q V Y+ Q+ Sbjct: 1 MPTGTVKWFNTTKGYGFIAPD---DGGKDVFVHISAVERSGLTGLADEQKVGYEL-QDGR 56 Query: 62 NGKYSAENLKLV 73 +G+ A +L L+ Sbjct: 57 DGRQMASDLTLL 68 >gi|167768567|ref|ZP_02440620.1| hypothetical protein CLOSS21_03126 [Clostridium sp. SS2/1] gi|317498676|ref|ZP_07956968.1| cold-shock' DNA-binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710091|gb|EDS20670.1| hypothetical protein CLOSS21_03126 [Clostridium sp. SS2/1] gi|291560528|emb|CBL39328.1| cold-shock DNA-binding protein family [butyrate-producing bacterium SSC/2] gi|316894018|gb|EFV16208.1| cold-shock' DNA-binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 66 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI+ E SGDDVF+H SA+ G L EGQ V+++ + Sbjct: 1 MSNGTVKWFNAEKGYGFISQE----SGDDVFVHFSAIQGKGFKTLEEGQSVSFEIEEG-P 55 Query: 62 NGKYSAENLKL 72 GK ++ KL Sbjct: 56 RGKQASNVTKL 66 >gi|296115724|ref|ZP_06834350.1| cold-shock DNA-binding domain protein [Gluconacetobacter hansenii ATCC 23769] gi|295977701|gb|EFG84453.1| cold-shock DNA-binding domain protein [Gluconacetobacter hansenii ATCC 23769] Length = 68 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ + + DVF+H SAV AGL L EGQ V+Y+ + Sbjct: 1 MATGTVKWFNAQKGFGFLEAD---DGTADVFVHISAVERAGLHGLNEGQKVSYEL-ETGR 56 Query: 62 NGKYSAENLKLV 73 NGK SA NL++V Sbjct: 57 NGKTSAANLQVV 68 >gi|227551933|ref|ZP_03981982.1| cold-shock protein [Enterococcus faecium TX1330] gi|257886902|ref|ZP_05666555.1| cold-shock protein [Enterococcus faecium 1,141,733] gi|257895473|ref|ZP_05675126.1| cold-shock protein [Enterococcus faecium Com12] gi|257898089|ref|ZP_05677742.1| cold-shock protein [Enterococcus faecium Com15] gi|293378339|ref|ZP_06624508.1| major cold shock protein CspA [Enterococcus faecium PC4.1] gi|293568617|ref|ZP_06679932.1| cold-shock protein [Enterococcus faecium E1071] gi|227178934|gb|EEI59906.1| cold-shock protein [Enterococcus faecium TX1330] gi|257822956|gb|EEV49888.1| cold-shock protein [Enterococcus faecium 1,141,733] gi|257832038|gb|EEV58459.1| cold-shock protein [Enterococcus faecium Com12] gi|257836001|gb|EEV61075.1| cold-shock protein [Enterococcus faecium Com15] gi|291588577|gb|EFF20410.1| cold-shock protein [Enterococcus faecium E1071] gi|292643203|gb|EFF61344.1| major cold shock protein CspA [Enterococcus faecium PC4.1] Length = 66 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFIT E+G+DVF+H SA+ G L EGQ VT+D + Sbjct: 1 METGTVKWFNSEKGFGFIT----AENGNDVFVHFSAIQGDGFKTLEEGQTVTFDVEEGQR 56 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 57 G--PQATNVT 64 >gi|149202227|ref|ZP_01879200.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035] gi|149144325|gb|EDM32356.1| cold-shock DNA-binding domain protein [Roseovarius sp. TM1035] Length = 68 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+G G DVF+H SAV AGL L + Q V +D + Sbjct: 1 MATGTVKWFNATKGYGFIAPDG---GGKDVFVHISAVERAGLTGLADNQKVKFDI-EAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N+ L Sbjct: 57 DGRESASNIVL 67 >gi|256374377|ref|YP_003098037.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] gi|255918680|gb|ACU34191.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] Length = 67 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI +G G DVF+H +A+ ++G +L E Q VT++ Q Sbjct: 1 MATGKVKWFNAEKGFGFIEQDG---GGPDVFVHFTAINASGYRSLEENQAVTFEVTQGPK 57 Query: 62 NGKYSAENLK 71 AEN++ Sbjct: 58 G--PQAENVQ 65 >gi|115379755|ref|ZP_01466829.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|115363242|gb|EAU62403.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] Length = 85 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT +G G+DVF H +A+ + G +LTEGQ V ++ + Sbjct: 19 MATGVVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQADGFRSLTEGQRVEFEVSRGPK 75 Query: 62 NGKYSAENLKLV 73 A+N+K + Sbjct: 76 G--LQAQNVKPI 85 >gi|119386361|ref|YP_917416.1| cold-shock DNA-binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119376956|gb|ABL71720.1| cold-shock DNA-binding protein family [Paracoccus denitrificans PD1222] Length = 80 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G DVF+H SA+ A + +L +GQ V+++ + Sbjct: 13 MANGTVKWFNATKGFGFIAP---ANGGKDVFVHISALERANISHLADGQAVSFEI-ETGR 68 Query: 62 NGKYSAENLKL 72 +G+ SA +L L Sbjct: 69 DGRQSARDLAL 79 >gi|169334115|ref|ZP_02861308.1| hypothetical protein ANASTE_00508 [Anaerofustis stercorihominis DSM 17244] gi|169258832|gb|EDS72798.1| hypothetical protein ANASTE_00508 [Anaerofustis stercorihominis DSM 17244] Length = 70 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KGYGFI+ + E+G+DVF+H SA++ G +L EGQ VTYD + Sbjct: 1 MNNGTVKWFNQEKGYGFISND---ETGEDVFVHYSAISGEGFKSLNEGQKVTYDVEADTK 57 Query: 62 NG-KYSAENL 70 N ++ A N+ Sbjct: 58 NKSRFRAVNV 67 >gi|164688479|ref|ZP_02212507.1| hypothetical protein CLOBAR_02124 [Clostridium bartlettii DSM 16795] gi|164602892|gb|EDQ96357.1| hypothetical protein CLOBAR_02124 [Clostridium bartlettii DSM 16795] Length = 66 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI+ EG DVF+H SA+ G +L EGQ V +D V+ A Sbjct: 1 MKTGVVKWFNNEKGFGFISVEGEG----DVFVHFSAIQCDGYKSLEEGQNVEFDVVEG-A 55 Query: 62 NGKYSAENLKL 72 G +A ++L Sbjct: 56 KGPQAANVVRL 66 >gi|85715497|ref|ZP_01046478.1| cold shock protein [Nitrobacter sp. Nb-311A] gi|85697692|gb|EAQ35568.1| cold shock protein [Nitrobacter sp. Nb-311A] Length = 70 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFI P+ G DVF+H SAV AGL +L EG ++Y+ V N G Sbjct: 6 TGTVKWFNGQKGYGFIQPDS---GGKDVFVHISAVERAGLNSLNEGDKISYEVVAN--RG 60 Query: 64 KYSAENLKL 72 K SAENL++ Sbjct: 61 KESAENLRV 69 >gi|116669342|ref|YP_830275.1| cold-shock DNA-binding protein family protein [Arthrobacter sp. FB24] gi|116609451|gb|ABK02175.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24] Length = 67 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFIT +GS GDDVF+H SA+ G L EGQ V ++ + + Sbjct: 1 MALGTVKWFNAEKGYGFITVDGS---GDDVFVHWSAIEREGYRALDEGQRVQFEVGEGEK 57 Query: 62 NGKYSAENLK 71 AEN++ Sbjct: 58 G--PQAENVR 65 >gi|119775193|ref|YP_927933.1| cold-shock DNA-binding domain-containing protein [Shewanella amazonensis SB2B] gi|119767693|gb|ABM00264.1| cold-shock DNA-binding protein family [Shewanella amazonensis SB2B] Length = 68 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ E G+DVF H S + G L GQ V ++ Q Sbjct: 1 MASGTVKWFNNAKGFGFICPD---EGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEQGPK 57 Query: 62 NGKYSA 67 SA Sbjct: 58 GMHASA 63 >gi|313890412|ref|ZP_07824043.1| cold shock protein CspA [Streptococcus pseudoporcinus SPIN 20026] gi|332523883|ref|ZP_08400135.1| cold shock protein CspA [Streptococcus porcinus str. Jelinkova 176] gi|313121255|gb|EFR44363.1| cold shock protein CspA [Streptococcus pseudoporcinus SPIN 20026] gi|332315147|gb|EGJ28132.1| cold shock protein CspA [Streptococcus porcinus str. Jelinkova 176] Length = 67 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ TE G DVF H SA+ S G L EGQ V +D + Sbjct: 1 MAQGTVKWFNAEKGFGFIS----TEEGQDVFAHFSAIQSDGFKTLDEGQKVEFDVEEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--PQAVNITKL 66 >gi|163791280|ref|ZP_02185694.1| cold-shock domain family protein [Carnobacterium sp. AT7] gi|159873421|gb|EDP67511.1| cold-shock domain family protein [Carnobacterium sp. AT7] Length = 66 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG+ DDVF+H SA+ + G +L EGQ VT+D + + Sbjct: 1 MEQGTVKWFNAEKGFGFIEREGA----DDVFVHFSAIQTDGFKSLEEGQTVTFDVEEGN- 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGPQAANV 63 >gi|157369915|ref|YP_001477904.1| cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] gi|157321679|gb|ABV40776.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] Length = 73 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V++D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVSFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|297196688|ref|ZP_06914086.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|297153348|gb|EFH32317.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] Length = 67 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP+KG+GFI +G G DVF+H SA+AS G L EGQ V +D Q Sbjct: 1 MATGTVKWFNPEKGFGFIEQDG---GGPDVFVHYSAIASTGFRELFEGQKVQFDVTQGPK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENVT 65 >gi|225181192|ref|ZP_03734638.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168161|gb|EEG76966.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] Length = 65 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI G+DVF+H SA+ + G L EGQ V +D V+ + G Sbjct: 2 QGKVKWFNAEKGFGFIE----RPDGEDVFVHFSAIQAEGFKTLEEGQDVEFDVVEGN-RG 56 Query: 64 KYSAENLKL 72 +A +++ Sbjct: 57 PQAANVVRI 65 >gi|116251065|ref|YP_766903.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|209548412|ref|YP_002280329.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|241203661|ref|YP_002974757.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115255713|emb|CAK06794.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|209534168|gb|ACI54103.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240857551|gb|ACS55218.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 69 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N KG+GFI P+ + DVF+H SAV AG+ L EGQ + YD V++ Sbjct: 1 MNSGVVKWFNGTKGFGFIQPD---DGSTDVFVHISAVERAGMRELVEGQKIRYDLVRDKK 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKNSADNLQ 67 >gi|116510999|ref|YP_808215.1| cold-shock DNA-binding protein family protein [Lactococcus lactis subsp. cremoris SK11] gi|125623057|ref|YP_001031540.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris MG1363] gi|3892590|emb|CAA76698.1| cold shock protein E [Lactococcus lactis subsp. cremoris MG1363] gi|116106653|gb|ABJ71793.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp. cremoris SK11] gi|124491865|emb|CAL96786.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris MG1363] gi|300069804|gb|ADJ59204.1| cold shock-like protein cspE [Lactococcus lactis subsp. cremoris NZ9000] Length = 65 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFIT TE G+DVF H SA+ + G L EGQ VT+D + Sbjct: 1 MAQGTVKWFNATKGFGFIT----TEEGNDVFAHFSAIQTDGFKTLDEGQKVTFDVEEGPR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQAVNIQ 64 >gi|311897073|dbj|BAJ29481.1| putative cold shock protein [Kitasatospora setae KM-6054] Length = 67 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S + ++G L EGQ V +D Q Sbjct: 1 MANGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNINASGFRELLEGQKVEFDVTQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PQAENIRPL 67 >gi|229825450|ref|ZP_04451519.1| hypothetical protein GCWU000182_00809 [Abiotrophia defectiva ATCC 49176] gi|229790013|gb|EEP26127.1| hypothetical protein GCWU000182_00809 [Abiotrophia defectiva ATCC 49176] Length = 71 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KGYGFIT + GDDVF+H SA+ G L EGQ VT++ + Sbjct: 1 MNTGVVKWFNSEKGYGFITND---NGGDDVFVHFSAINVEGFKTLNEGQKVTFETETDPK 57 Query: 62 N-GKYSAENLKL 72 N K A N+ + Sbjct: 58 NSSKLRAVNVSI 69 >gi|86140176|ref|ZP_01058738.1| cold shock family protein [Roseobacter sp. MED193] gi|85823113|gb|EAQ43326.1| cold shock family protein [Roseobacter sp. MED193] Length = 68 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G DVF+H SAV +GL L + Q VT+D + Sbjct: 1 MASGTVKWFNSTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVTFDI-EPGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL+L Sbjct: 57 DGRESAVNLEL 67 >gi|288555145|ref|YP_003427080.1| cold shock protein [Bacillus pseudofirmus OF4] gi|288546305|gb|ADC50188.1| cold shock protein [Bacillus pseudofirmus OF4] Length = 65 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V+++ Q A Sbjct: 1 MTQGTVKWFNAEKGFGFIEVE----GGDDVFVHFSAIQGEGFKSLEEGQAVSFEIEQG-A 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|299537233|ref|ZP_07050536.1| major cold shock protein [Lysinibacillus fusiformis ZC1] gi|298727474|gb|EFI68046.1| major cold shock protein [Lysinibacillus fusiformis ZC1] Length = 66 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G+DVF+H SA+ S G L EGQ V + V+ + Sbjct: 1 MTQGTVKWFNAEKGFGFIAVE----GGNDVFVHFSAIQSDGFKTLEEGQKVEFG-VEEGS 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQATNVVKL 66 >gi|154252646|ref|YP_001413470.1| cold-shock DNA-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154156596|gb|ABS63813.1| putative cold-shock DNA-binding domain protein [Parvibaculum lavamentivorans DS-1] Length = 67 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI P ++ G DVF+H SAV AG+ L EGQ + Y+ V Sbjct: 1 MATGVVKWFNTQKGYGFIQP---SDGGRDVFVHISAVERAGMSTLNEGQKINYELVTE-- 55 Query: 62 NGKYSAENLKL 72 GK SA NL + Sbjct: 56 KGKTSAANLTV 66 >gi|116619951|ref|YP_822107.1| cold-shock DNA-binding protein family protein [Candidatus Solibacter usitatus Ellin6076] gi|116223113|gb|ABJ81822.1| cold-shock DNA-binding protein family [Candidatus Solibacter usitatus Ellin6076] Length = 67 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N KGYGFI GDDVF+H SA+ + G +L EG V ++ Q Sbjct: 1 MKEKGTVKWFNAAKGYGFIQ----RSGGDDVFVHFSAIQANGYRSLDEGAEVEFEVKQGP 56 Query: 61 ANGKYSAENLKLV 73 AEN+ LV Sbjct: 57 KG--LQAENVALV 67 >gi|188534489|ref|YP_001908286.1| cold shock protein CspE [Erwinia tasmaniensis Et1/99] gi|259909137|ref|YP_002649493.1| cold shock protein CspE [Erwinia pyrifoliae Ep1/96] gi|292487595|ref|YP_003530467.1| cold shock-like protein CspE [Erwinia amylovora CFBP1430] gi|292898834|ref|YP_003538203.1| cold shock-like protein [Erwinia amylovora ATCC 49946] gi|300715812|ref|YP_003740615.1| Cold shock protein [Erwinia billingiae Eb661] gi|188029531|emb|CAO97408.1| Putative cold shock-like protein [Erwinia tasmaniensis Et1/99] gi|224964759|emb|CAX56276.1| similar to cold shock protein CspE [Erwinia pyrifoliae Ep1/96] gi|291198682|emb|CBJ45791.1| cold shock-like protein [Erwinia amylovora ATCC 49946] gi|291553014|emb|CBA20059.1| Cold shock-like protein cspE (CSP-E) [Erwinia amylovora CFBP1430] gi|299061648|emb|CAX58764.1| Cold shock protein [Erwinia billingiae Eb661] gi|310766962|gb|ADP11912.1| Cold shock-like protein cspE (CSP-E) [Erwinia sp. Ejp617] gi|312171701|emb|CBX79959.1| Cold shock-like protein cspE (CSP-E) [Erwinia amylovora ATCC BAA-2158] Length = 69 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ N A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-NGAKG 60 Query: 64 KYSAEN 69 +A Sbjct: 61 PSAANV 66 >gi|152969470|ref|YP_001334579.1| DNA replication inhibitor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580364|ref|YP_002239468.1| cold shock domain protein CspD [Klebsiella pneumoniae 342] gi|238893942|ref|YP_002918676.1| cold shock-like protein [Klebsiella pneumoniae NTUH-K2044] gi|262041018|ref|ZP_06014238.1| cold-shock protein CspD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936316|ref|YP_003440375.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|290510628|ref|ZP_06549998.1| cold shock domain-containing protein CspD [Klebsiella sp. 1_1_55] gi|329998509|ref|ZP_08303131.1| cold shock domain protein CspD [Klebsiella sp. MS 92-3] gi|150954319|gb|ABR76349.1| DNA replication inhibitor, nucleic acid-binding domain [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569422|gb|ACI11198.1| cold shock domain protein CspD [Klebsiella pneumoniae 342] gi|238546258|dbj|BAH62609.1| cold shock-like protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041634|gb|EEW42685.1| cold-shock protein CspD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288891025|gb|ADC59343.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|289777344|gb|EFD85342.1| cold shock domain-containing protein CspD [Klebsiella sp. 1_1_55] gi|328538654|gb|EGF64751.1| cold shock domain protein CspD [Klebsiella sp. MS 92-3] Length = 73 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQAVRFDVHQG-P 56 Query: 62 NGKYSAENLKLVPKSS 77 G +++ + + +++ Sbjct: 57 KGNHASVIVPVEAETA 72 >gi|50121583|ref|YP_050750.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043] gi|49612109|emb|CAG75559.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043] Length = 73 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG GDD+F H S + G L GQ+V +D + Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGDDIFAHYSTIQMDGYRTLKAGQVVRFDVHEGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|254380603|ref|ZP_04995969.1| cold shock protein scoF [Streptomyces sp. Mg1] gi|194339514|gb|EDX20480.1| cold shock protein scoF [Streptomyces sp. Mg1] Length = 67 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H SA+ S+G L EGQ+VT+D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSSGFRELQEGQIVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|89093060|ref|ZP_01166011.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp. MED92] gi|89082710|gb|EAR61931.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp. MED92] Length = 67 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N +KG+GFI E +G DVF+H SA+ G L EGQ V + Q Sbjct: 1 MSTTGTVKWFNEEKGFGFIEQE----NGPDVFVHFSAIQGDGFKTLAEGQKVEFSVTQGQ 56 Query: 61 ANGKYSAENLK 71 AEN+ Sbjct: 57 KG--PQAENVT 65 >gi|330811400|ref|YP_004355862.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379508|gb|AEA70858.1| Putative transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 201 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 134 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 188 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 189 LQAEDVIAALPR 200 >gi|323137446|ref|ZP_08072524.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] gi|322397433|gb|EFX99956.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] Length = 69 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AG+ +L+EGQ ++YD + + Sbjct: 1 MFYGTVKWFNSQKGFGFIQPD---DGGKDVFVHISAVEQAGMRDLSEGQKLSYDIIDDRR 57 Query: 62 NGKYSAENLK 71 +GK SA L+ Sbjct: 58 SGKASAGKLQ 67 >gi|317122838|ref|YP_004102841.1| cold-shock DNA-binding protein family [Thermaerobacter marianensis DSM 12885] gi|315592818|gb|ADU52114.1| cold-shock DNA-binding protein family [Thermaerobacter marianensis DSM 12885] Length = 66 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KGYGFIT + + DVF+H SA+ G L EGQ VT+D V+ + Sbjct: 2 TGTVKWFNAEKGYGFITRD---DGQGDVFVHFSAIVGTGYRTLEEGQKVTFDVVEGEKGP 58 Query: 64 KYSAENLKLV 73 K A+N+ ++ Sbjct: 59 K--AQNVVVL 66 >gi|304407680|ref|ZP_07389331.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] gi|304343163|gb|EFM09006.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] Length = 65 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI TE G DVF+H SA+ + G L EGQ V +D V+ A G Sbjct: 2 QGKVKWFNAEKGYGFIE----TEQGGDVFVHFSAIQADGFKTLEEGQAVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A KL Sbjct: 57 PQAANVTKL 65 >gi|294787952|ref|ZP_06753196.1| putative cold-shock protein [Simonsiella muelleri ATCC 29453] gi|294484245|gb|EFG31928.1| putative cold-shock protein [Simonsiella muelleri ATCC 29453] Length = 67 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMEGFKTLKEGQKVSFEVTTGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|302381609|ref|YP_003817432.1| cold-shock DNA-binding domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192237|gb|ADK99808.1| cold-shock DNA-binding domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 70 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KWYN KGYGFI P ++ G DVF+H SAV AG+ L EGQ V+Y+ ++ Sbjct: 1 MATGTVKWYNSTKGYGFIEP---SDGGKDVFVHVSAVEGAGMNGLNEGQKVSYEVEKDRR 57 Query: 62 NGKYSAENLK 71 GK SA LK Sbjct: 58 TGKESAGQLK 67 >gi|222152818|ref|YP_002561995.1| cold shock protein [Streptococcus uberis 0140J] gi|222113631|emb|CAR41517.1| cold shock protein [Streptococcus uberis 0140J] Length = 67 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ E +GDDVF H SA+ S G +L EGQ V +D Q Sbjct: 1 MAQGTVKWFNAEKGFGFISQE----NGDDVFAHFSAIQSDGFKSLDEGQKVEFDIEQGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ V Sbjct: 57 G--LQATNITKV 66 >gi|16119742|ref|NP_396448.1| cold shock protein [Agrobacterium tumefaciens str. C58] gi|15162334|gb|AAK90889.1| cold shock protein [Agrobacterium tumefaciens str. C58] Length = 74 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFI P+ G D F+H SAV AG+ L EGQ + +D ++ Sbjct: 5 IMTTGTVKWFNSTKGFGFIQPD---NGGVDAFVHISAVERAGMRELVEGQKIGFDLERDM 61 Query: 61 ANGKYSAENLK 71 +GK SA NL+ Sbjct: 62 KSGKMSACNLQ 72 >gi|330875784|gb|EGH09933.1| cold shock domain family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 92 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G + +D+F H SA+ G L GQ V++D +Q Sbjct: 1 MLYGKVKWFNNAKGYGFILEDGKPD--EDLFAHFSAIQMDGYKTLKAGQPVSFDIIQGPK 58 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 59 G--LHAVNIQ 66 >gi|126699928|ref|YP_001088825.1| cold shock protein [Clostridium difficile 630] gi|254975893|ref|ZP_05272365.1| cold shock protein [Clostridium difficile QCD-66c26] gi|255093279|ref|ZP_05322757.1| cold shock protein [Clostridium difficile CIP 107932] gi|255101459|ref|ZP_05330436.1| cold shock protein [Clostridium difficile QCD-63q42] gi|255307332|ref|ZP_05351503.1| cold shock protein [Clostridium difficile ATCC 43255] gi|255315026|ref|ZP_05356609.1| cold shock protein [Clostridium difficile QCD-76w55] gi|255517696|ref|ZP_05385372.1| cold shock protein [Clostridium difficile QCD-97b34] gi|255650808|ref|ZP_05397710.1| cold shock protein [Clostridium difficile QCD-37x79] gi|255656285|ref|ZP_05401694.1| cold shock protein [Clostridium difficile QCD-23m63] gi|260683889|ref|YP_003215174.1| cold shock protein [Clostridium difficile CD196] gi|260687549|ref|YP_003218683.1| cold shock protein [Clostridium difficile R20291] gi|296450274|ref|ZP_06892035.1| cold shock protein CspA [Clostridium difficile NAP08] gi|296878689|ref|ZP_06902694.1| cold shock protein CspA [Clostridium difficile NAP07] gi|306520707|ref|ZP_07407054.1| cold shock protein [Clostridium difficile QCD-32g58] gi|115251365|emb|CAJ69197.1| Cold shock protein D [Clostridium difficile] gi|260210052|emb|CBA64132.1| cold shock protein [Clostridium difficile CD196] gi|260213566|emb|CBE05331.1| cold shock protein [Clostridium difficile R20291] gi|296261037|gb|EFH07871.1| cold shock protein CspA [Clostridium difficile NAP08] gi|296430496|gb|EFH16338.1| cold shock protein CspA [Clostridium difficile NAP07] Length = 66 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFI+ ESGDDVF H SA+ ++G +L EGQ V++D V+ Sbjct: 1 MNNGIVKWFNNEKGFGFIS----MESGDDVFAHFSAIQTSGFKSLEEGQKVSFDIVKGAR 56 Query: 62 NGKYSAENLKLV 73 AEN+ ++ Sbjct: 57 G--PQAENITIL 66 >gi|256391325|ref|YP_003112889.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256357551|gb|ACU71048.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 69 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI +G G DVF+H SA+ +G NL E Q V ++ Q Sbjct: 1 MATGTVKWFNGEKGYGFIAQDG---GGPDVFVHFSAIEGSGYRNLEENQPVEFEITQGPK 57 Query: 62 NGKYSAENLKLVPK 75 AE ++ + + Sbjct: 58 G--PQAEKVRALAQ 69 >gi|296100584|ref|YP_003610730.1| major cold shock protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055043|gb|ADF59781.1| major cold shock protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295095151|emb|CBK84241.1| cold-shock DNA-binding protein family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 70 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H SA+ + G +L EGQ V++ ++ A G Sbjct: 6 TGLVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PAAGNVVSL 70 >gi|258650835|ref|YP_003199991.1| cold-shock DNA-binding domain-containing protein [Nakamurella multipartita DSM 44233] gi|258554060|gb|ACV77002.1| cold-shock DNA-binding domain protein [Nakamurella multipartita DSM 44233] Length = 67 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFITP E G DVF+H S + + G +L E Q VTY Q Sbjct: 1 MAQGTVKWFNAEKGFGFITP---NEGGPDVFVHYSEIQAGGYRSLEENQQVTYTVTQGT- 56 Query: 62 NGKYSAENLKL 72 G + + L Sbjct: 57 KGPQATQVTPL 67 >gi|126653234|ref|ZP_01725352.1| cold shock protein [Bacillus sp. B14905] gi|126589985|gb|EAZ84113.1| cold shock protein [Bacillus sp. B14905] Length = 66 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI + G+DVF+H + + G L EGQ V++D V+ + Sbjct: 1 MQHGIVKWFNNEKGYGFIE----CDDGEDVFVHFTGIQEEGFRTLEEGQKVSFDVVEGN- 55 Query: 62 NGKYSAENLKL 72 G ++ +KL Sbjct: 56 RGPQASNVVKL 66 >gi|119897425|ref|YP_932638.1| cold-shock protein [Azoarcus sp. BH72] gi|119669838|emb|CAL93751.1| cold-shock protein [Azoarcus sp. BH72] Length = 67 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + +D+F H SA+ G L EG+ V+++ Q Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMNGFKTLKEGEKVSFEVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|111226121|ref|YP_716915.1| major cold shock protein, ssDNA-binding property [Frankia alni ACN14a] gi|111153653|emb|CAJ65413.1| major cold shock protein, ssDNA-binding property [Frankia alni ACN14a] Length = 67 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ +G G DVF+H S++ + G +L EGQ V ++ VQ Sbjct: 1 MAQGTVKWFNAEKGFGFISVDG---GGPDVFVHYSSIVADGYKSLDEGQSVQFEIVQGQK 57 Query: 62 NGKYSAENLK 71 A+N+ Sbjct: 58 G--PQADNVT 65 >gi|295688372|ref|YP_003592065.1| cold-shock DNA-binding domain-containing protein [Caulobacter segnis ATCC 21756] gi|295430275|gb|ADG09447.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC 21756] Length = 69 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G D+F+H SAV AGL L EGQ ++++ + Sbjct: 1 MATGTVKWFNSAKGFGFIQPD---NGGQDIFVHISAVERAGLNGLNEGQKLSFEPEVDRR 57 Query: 62 NGKYSAENLKLV 73 +GK SA L+ V Sbjct: 58 SGKTSAGQLQAV 69 >gi|271970090|ref|YP_003344286.1| cold-shock DNA-binding domain-containing protein [Streptosporangium roseum DSM 43021] gi|270513265|gb|ACZ91543.1| putative cold-shock DNA-binding domain protein [Streptosporangium roseum DSM 43021] Length = 66 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKGYGFI + G DVF+H SA+ G L +GQ V ++ Q Sbjct: 1 MAQGTVKWFNADKGYGFIAVD----GGKDVFVHYSAIMMDGYRALEQGQRVEFEITQGQK 56 Query: 62 NGKYSAENLKLV 73 AE+++ V Sbjct: 57 G--PQAESVRAV 66 >gi|209521754|ref|ZP_03270439.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|209497821|gb|EDZ97991.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] Length = 67 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H S + ++G +L E Q V+++ Q Sbjct: 1 MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIQASGFKSLQENQKVSFEVKQG-P 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|327440557|dbj|BAK16922.1| cold shock protein [Solibacillus silvestris StLB046] Length = 66 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G+DVF H SA+ G +L EGQ V ++ ++ Sbjct: 1 MTQGTVKWFNAEKGFGFIEVE----GGNDVFAHFSAIQGEGFKSLDEGQKVEFEI-EDGQ 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQATNIVKL 66 >gi|218548403|ref|YP_002382194.1| cold shock protein-like protein [Escherichia fergusonii ATCC 35469] gi|218355944|emb|CAQ88559.1| cold shock protein homolog [Escherichia fergusonii ATCC 35469] gi|324113824|gb|EGC07799.1| cold shock domain-containing protein CspD [Escherichia fergusonii B253] gi|325496824|gb|EGC94683.1| cold shock protein [Escherichia fergusonii ECD227] Length = 73 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQPVQFDVTQG-P 56 Query: 62 NGKYSAENLKLVPKSSN 78 G +++ +VP + Sbjct: 57 KGNHASV---IVPYEAE 70 >gi|156936422|ref|YP_001440338.1| major cold shock protein [Cronobacter sakazakii ATCC BAA-894] gi|156534676|gb|ABU79502.1| hypothetical protein ESA_04323 [Cronobacter sakazakii ATCC BAA-894] Length = 70 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFITP+ DVF+H SA+ + G L EGQ V++ V++ A G Sbjct: 6 TGLVKWFNAEKGFGFITPD---NGSKDVFVHFSAIQNNGFKTLEEGQKVSFS-VESGAKG 61 Query: 64 KYSAENLKL 72 +A + Sbjct: 62 PAAANVTAI 70 >gi|149180594|ref|ZP_01859098.1| cold-shock domain family protein [Bacillus sp. SG-1] gi|148851747|gb|EDL65893.1| cold-shock domain family protein [Bacillus sp. SG-1] Length = 66 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MEKGTVKWFNAEKGFGFIEVE----GGEDVFVHFSAIQGEGFKSLDEGQAVTFDIEQGQ- 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGPQAANV 63 >gi|153005392|ref|YP_001379717.1| cold-shock DNA-binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028965|gb|ABS26733.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 65 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+ E G+DVF+H +A+ G L EG+ V +D Q Sbjct: 1 MATGTVKWFNDAKGFGFISQE----GGEDVFVHHTAIQMDGFRTLKEGERVEFDVTQG-P 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 KGLQAANV 63 >gi|328951487|ref|YP_004368822.1| cold-shock DNA-binding domain protein [Marinithermus hydrothermalis DSM 14884] gi|328451811|gb|AEB12712.1| cold-shock DNA-binding domain protein [Marinithermus hydrothermalis DSM 14884] Length = 72 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 6/77 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI E SG DVF+H SA+ G L EG +VT++ Q Sbjct: 1 MEKGRVKWFNAEKGYGFIERE----SGGDVFVHFSAINGTGFRTLNEGDVVTFEIKQAAK 56 Query: 62 NGKYSAENLKLVPKSSN 78 +A+N+ +V +S Sbjct: 57 G--PAADNVTVVEPASQ 71 >gi|283784647|ref|YP_003364512.1| cold shock-like protein CspD [Citrobacter rodentium ICC168] gi|282948101|emb|CBG87666.1| cold shock-like protein CspD [Citrobacter rodentium ICC168] Length = 73 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQPVQFDVHQG-P 56 Query: 62 NGKYSAENLKLVPKS 76 G +++ + + ++ Sbjct: 57 KGNHASVIVPIEAEA 71 >gi|314935260|ref|ZP_07842613.1| conserved domain protein [Staphylococcus hominis subsp. hominis C80] gi|313656595|gb|EFS20334.1| conserved domain protein [Staphylococcus hominis subsp. hominis C80] Length = 75 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E GDDVF+H S +A+ G L EGQ V +D + Sbjct: 10 MNNGTVKWFNAEKGFGFIERE----DGDDVFVHFSGIATDGYKTLEEGQKVEFDITEGQR 65 Query: 62 NGKYSAENLKLV 73 A N+ V Sbjct: 66 G--EQATNVVPV 75 >gi|311280210|ref|YP_003942441.1| cold-shock DNA-binding domain-containing protein [Enterobacter cloacae SCF1] gi|308749405|gb|ADO49157.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1] Length = 73 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQPVRFDVHQG-P 56 Query: 62 NGKYSAENLKLVPKSS 77 G +++ + + +++ Sbjct: 57 KGNHASVIIPVEAETA 72 >gi|28896678|ref|NP_803028.1| cold shock protein [Streptococcus pyogenes SSI-1] gi|71904413|ref|YP_281216.1| cold shock protein [Streptococcus pyogenes MGAS6180] gi|71911578|ref|YP_283128.1| cold shock protein [Streptococcus pyogenes MGAS5005] gi|94989406|ref|YP_597507.1| cold shock protein [Streptococcus pyogenes MGAS9429] gi|94993297|ref|YP_601396.1| cold shock protein [Streptococcus pyogenes MGAS2096] gi|94995255|ref|YP_603353.1| Cold shock protein [Streptococcus pyogenes MGAS10750] gi|209560193|ref|YP_002286665.1| Major cold-shock protein [Streptococcus pyogenes NZ131] gi|306826514|ref|ZP_07459824.1| cold shock protein CspA [Streptococcus pyogenes ATCC 10782] gi|28811932|dbj|BAC64861.1| putative cold shock protein [Streptococcus pyogenes SSI-1] gi|71803508|gb|AAX72861.1| cold shock protein [Streptococcus pyogenes MGAS6180] gi|71854360|gb|AAZ52383.1| cold shock protein [Streptococcus pyogenes MGAS5005] gi|94542914|gb|ABF32963.1| cold shock protein [Streptococcus pyogenes MGAS9429] gi|94546805|gb|ABF36852.1| Cold shock protein [Streptococcus pyogenes MGAS2096] gi|94548763|gb|ABF38809.1| Cold shock protein [Streptococcus pyogenes MGAS10750] gi|209541394|gb|ACI61970.1| Major cold-shock protein [Streptococcus pyogenes NZ131] gi|304431301|gb|EFM34300.1| cold shock protein CspA [Streptococcus pyogenes ATCC 10782] Length = 69 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ TE+G DVF H SA+ + G L EGQ V +D + Sbjct: 3 MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 58 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 59 G--PQAVNITKL 68 >gi|312138659|ref|YP_004005995.1| cold shock protein [Rhodococcus equi 103S] gi|325676272|ref|ZP_08155951.1| cold shock protein CspA [Rhodococcus equi ATCC 33707] gi|311887998|emb|CBH47310.1| cold shock protein [Rhodococcus equi 103S] gi|325552833|gb|EGD22516.1| cold shock protein CspA [Rhodococcus equi ATCC 33707] Length = 67 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+ + DVF+H SA+ + G L E Q V ++ Q + Sbjct: 1 MAEGTVKWFNAEKGFGFIAPD---DGSADVFVHYSAIQTNGFRTLEENQRVRFEIGQGNK 57 Query: 62 NGKYSAENLKLV 73 A ++ V Sbjct: 58 G--PQATDVTAV 67 >gi|251794220|ref|YP_003008951.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] gi|247541846|gb|ACS98864.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] Length = 66 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ VQ + Sbjct: 1 MQQGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAIVGEGFKTLEEGQRVEFNVVQGN- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQAENVVKL 66 >gi|170696311|ref|ZP_02887442.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] gi|170138792|gb|EDT06989.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] Length = 67 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H S + S G +L E Q V+++ Q Sbjct: 1 MPTGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRSEGFKSLQENQKVSFEVKQG-P 56 Query: 62 NGKYSAE 68 GK +A+ Sbjct: 57 KGKQAAD 63 >gi|163744653|ref|ZP_02152013.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45] gi|161381471|gb|EDQ05880.1| cold shock protein CspA [Oceanibulbus indolifex HEL-45] Length = 68 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G DVF+H SAV AGL L + Q VT+D + Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLADNQKVTFDI-EAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N+ L Sbjct: 57 DGRESATNIAL 67 >gi|16079252|ref|NP_390076.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus subtilis subsp. subtilis str. 168] gi|221310107|ref|ZP_03591954.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|221314429|ref|ZP_03596234.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319351|ref|ZP_03600645.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221323627|ref|ZP_03604921.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. SMY] gi|321311659|ref|YP_004203946.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus subtilis BSn5] gi|1706171|sp|P51777|CSPD_BACSU RecName: Full=Cold shock protein CspD gi|1256629|gb|AAA96623.1| cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|2634613|emb|CAB14111.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus subtilis subsp. subtilis str. 168] gi|291484613|dbj|BAI85688.1| cold-shock protein [Bacillus subtilis subsp. natto BEST195] gi|320017933|gb|ADV92919.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus subtilis BSn5] Length = 66 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E GDDVF+H +A+ G +L EGQ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIEGDGYKSLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G ++ +KL Sbjct: 56 RGPQASNVVKL 66 >gi|125974357|ref|YP_001038267.1| cold-shock DNA-binding protein family protein [Clostridium thermocellum ATCC 27405] gi|256005564|ref|ZP_05430524.1| cold-shock DNA-binding domain protein [Clostridium thermocellum DSM 2360] gi|281418904|ref|ZP_06249922.1| cold-shock DNA-binding domain protein [Clostridium thermocellum JW20] gi|125714582|gb|ABN53074.1| cold-shock DNA-binding protein family [Clostridium thermocellum ATCC 27405] gi|255990472|gb|EEU00594.1| cold-shock DNA-binding domain protein [Clostridium thermocellum DSM 2360] gi|281407361|gb|EFB37621.1| cold-shock DNA-binding domain protein [Clostridium thermocellum JW20] gi|316941515|gb|ADU75549.1| cold-shock DNA-binding domain protein [Clostridium thermocellum DSM 1313] Length = 66 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KG+GFI E G DVF+H SA+ G L EG V ++ V+ A Sbjct: 1 MERGRVKWFNAEKGFGFIERE----GGKDVFVHFSAINMDGYKTLEEGAEVEFEVVEG-A 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 KGPQAANVTK 65 >gi|304403836|ref|ZP_07385498.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] gi|304346814|gb|EFM12646.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] Length = 65 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI E +G+DVF+H SA+ G L EGQ V +D + G Sbjct: 2 KGTVKWFNAEKGYGFIQVE----NGEDVFVHFSAITGEGFKTLEEGQAVEFDIT-DGNRG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|16759816|ref|NP_455433.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764305|ref|NP_459920.1| stress response protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142411|ref|NP_805753.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414004|ref|YP_151079.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179468|ref|YP_215885.1| CspA-like protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157146440|ref|YP_001453759.1| hypothetical protein CKO_02200 [Citrobacter koseri ATCC BAA-895] gi|161503927|ref|YP_001571039.1| hypothetical protein SARI_02018 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161614826|ref|YP_001588791.1| hypothetical protein SPAB_02579 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550382|ref|ZP_02344139.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168230817|ref|ZP_02655875.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236854|ref|ZP_02661912.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240791|ref|ZP_02665723.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263571|ref|ZP_02685544.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466527|ref|ZP_02700389.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819926|ref|ZP_02831926.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446783|ref|YP_002040144.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451466|ref|YP_002044937.1| cold shock domain-containing protein CspD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470525|ref|ZP_03076509.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734305|ref|YP_002114000.1| cold shock domain-containing protein CspD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248616|ref|YP_002145861.1| cold shock domain-containing protein CspD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264137|ref|ZP_03164211.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362927|ref|YP_002142564.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245012|ref|YP_002214871.1| cold shock domain-containing protein CspD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200391092|ref|ZP_03217703.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930059|ref|ZP_03221080.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352154|ref|YP_002225955.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856338|ref|YP_002242989.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213053362|ref|ZP_03346240.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419933|ref|ZP_03352999.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428023|ref|ZP_03360773.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581371|ref|ZP_03363197.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213620716|ref|ZP_03373499.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649853|ref|ZP_03379906.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865355|ref|ZP_03387474.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582755|ref|YP_002636553.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913423|ref|ZP_04657260.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289805674|ref|ZP_06536303.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289825001|ref|ZP_06544364.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25296125|pir||AG0609 cold shock-like protein CspD [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419455|gb|AAL19879.1| CspA-like protein but not cold shock induced [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502109|emb|CAD05345.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi] gi|29138041|gb|AAO69602.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128261|gb|AAV77767.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127101|gb|AAX64804.1| CspA-like protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157083645|gb|ABV13323.1| hypothetical protein CKO_02200 [Citrobacter koseri ATCC BAA-895] gi|160865274|gb|ABX21897.1| hypothetical protein SARI_02018 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161364190|gb|ABX67958.1| hypothetical protein SPAB_02579 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405446|gb|ACF65668.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409770|gb|ACF69989.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456889|gb|EDX45728.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709807|gb|ACF89028.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630992|gb|EDX49578.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094404|emb|CAR59920.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212319|gb|ACH49716.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242392|gb|EDY25012.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290126|gb|EDY29483.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939528|gb|ACH76861.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603537|gb|EDZ02083.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321053|gb|EDZ06254.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271935|emb|CAR36779.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324550|gb|EDZ12389.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334822|gb|EDZ21586.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339865|gb|EDZ26629.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343272|gb|EDZ30036.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347672|gb|EDZ34303.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708141|emb|CAR32434.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467282|gb|ACN45112.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246160|emb|CBG23964.1| cold shock-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992672|gb|ACY87557.1| stress response protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157488|emb|CBW16978.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911933|dbj|BAJ35907.1| cold shock protein CspD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085180|emb|CBY94967.1| Cold shock-like protein cspD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223268|gb|EFX48337.1| Cold shock protein CspD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616380|gb|EFY13289.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619630|gb|EFY16505.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622674|gb|EFY19519.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628587|gb|EFY25374.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631523|gb|EFY28279.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637050|gb|EFY33753.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641752|gb|EFY38388.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644456|gb|EFY40996.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649574|gb|EFY46005.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654124|gb|EFY50447.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658039|gb|EFY54306.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663513|gb|EFY59715.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670249|gb|EFY66389.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671485|gb|EFY67607.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676841|gb|EFY72908.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682766|gb|EFY78785.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686445|gb|EFY82427.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713938|gb|EFZ05509.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129210|gb|ADX16640.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323196101|gb|EFZ81264.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196753|gb|EFZ81897.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202967|gb|EFZ88001.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209008|gb|EFZ93945.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211913|gb|EFZ96741.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215155|gb|EFZ99900.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222358|gb|EGA06736.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226879|gb|EGA11062.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229833|gb|EGA13956.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233058|gb|EGA17154.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240793|gb|EGA24835.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243110|gb|EGA27130.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247431|gb|EGA31387.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251653|gb|EGA35520.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257359|gb|EGA41057.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261948|gb|EGA45514.1| cold shock domain protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267963|gb|EGA51442.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271970|gb|EGA55385.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622624|gb|EGE28969.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627198|gb|EGE33541.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987837|gb|AEF06820.1| stress response protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 73 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQG-P 56 Query: 62 NGKYSAENLKLVPKS 76 G +++ + + ++ Sbjct: 57 KGNHASVIVPIEAEA 71 >gi|322381500|ref|ZP_08055480.1| cold-shock protein molecular chaperone RNA-helicase co-factor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|322382685|ref|ZP_08056543.1| cold-shock protein molecular chaperone-like protein/RNA-helicase-like protein co-factor [Paenibacillus larvae subsp. larvae B-3650] gi|321153346|gb|EFX45776.1| cold-shock protein molecular chaperone-like protein/RNA-helicase-like protein co-factor [Paenibacillus larvae subsp. larvae B-3650] gi|321154542|gb|EFX46838.1| cold-shock protein molecular chaperone RNA-helicase co-factor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 68 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E G+DVF+H S++ G +L EGQ V ++ Q + Sbjct: 1 MQTGTVKWFNAEKGFGFIE----IEQGNDVFVHFSSIEGDGYKSLDEGQRVQFNVTQGNR 56 Query: 62 NGKYSAENLKLV 73 AEN+ V Sbjct: 57 G--PQAENVSKV 66 >gi|238927666|ref|ZP_04659426.1| major cold shock protein [Selenomonas flueggei ATCC 43531] gi|238884382|gb|EEQ48020.1| major cold shock protein [Selenomonas flueggei ATCC 43531] Length = 88 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ DKGYGFI+ E GDDVF+H S++ G L+EGQ V +D V+ A G Sbjct: 24 TGKVKWFSADKGYGFISRE----DGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVEG-ARG 78 Query: 64 KYSAENLK 71 + +K Sbjct: 79 PQADNVVK 86 >gi|261404186|ref|YP_003240427.1| cold-shock DNA-binding domain-containing protein [Paenibacillus sp. Y412MC10] gi|261280649|gb|ACX62620.1| cold-shock DNA-binding domain protein [Paenibacillus sp. Y412MC10] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E G+DVF+H SA+A G +L EGQ V ++ VQ + Sbjct: 1 MQTGTVKWFNAEKGFGFIEVE----GGEDVFVHFSAIAGDGFKSLDEGQRVEFNVVQGNR 56 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 57 G--QQAENV 63 >gi|23099198|ref|NP_692664.1| cold shock protein [Oceanobacillus iheyensis HTE831] gi|22777426|dbj|BAC13699.1| cold shock protein [Oceanobacillus iheyensis HTE831] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI E G+DVF+H SA+ G +L EGQ V+++ V+ + Sbjct: 1 MENGVVKWFNAEKGYGFIQ----LEEGNDVFVHYSAIQEEGFKSLEEGQEVSFEIVEGE- 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGPQAANVVK 65 >gi|298292870|ref|YP_003694809.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296929381|gb|ADH90190.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 69 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G DVF+H SAV AGL L EGQ ++Y+ + Sbjct: 1 MAAGTVKWFNGQKGFGFIQPD---NGGPDVFVHISAVERAGLVGLNEGQKISYEVETDRR 57 Query: 62 NGKYSAENLKLV 73 +GK SA +L+ V Sbjct: 58 SGKSSAGSLQAV 69 >gi|294678657|ref|YP_003579272.1| cold shock-like protein CspD [Rhodobacter capsulatus SB 1003] gi|294477477|gb|ADE86865.1| cold shock-like protein CspD [Rhodobacter capsulatus SB 1003] Length = 68 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI PE G DVF+H SAV AGL L +GQ + YD + Sbjct: 1 MAKGTVKWFNQTKGFGFIAPES---GGKDVFVHISAVERAGLRGLNDGQAINYDL-EKGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL + Sbjct: 57 DGRESAINLAI 67 >gi|293396849|ref|ZP_06641123.1| cold shock domain protein CspD [Serratia odorifera DSM 4582] gi|291420320|gb|EFE93575.1| cold shock domain protein CspD [Serratia odorifera DSM 4582] Length = 73 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIKMDGYRTLKAGQQVRFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|169828200|ref|YP_001698358.1| major cold shock protein [Lysinibacillus sphaericus C3-41] gi|168992688|gb|ACA40228.1| Major cold shock protein [Lysinibacillus sphaericus C3-41] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G+DVF+H SA+ + G L EGQ V + + + Sbjct: 1 MTQGTVKWFNAEKGFGFIAVE----GGNDVFVHFSAIQTDGFKTLEEGQKVEFGVEEGN- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQATNVVKL 66 >gi|91777186|ref|YP_552394.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|91689846|gb|ABE33044.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] Length = 77 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H S V +G +L E Q VT++ Q Sbjct: 11 MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEVQGSGFKSLQENQKVTFEVKQG-P 66 Query: 62 NGKYSAE 68 GK +A Sbjct: 67 KGKQAAN 73 >gi|329116681|ref|ZP_08245398.1| major cold shock protein CspA [Streptococcus parauberis NCFD 2020] gi|326907086|gb|EGE54000.1| major cold shock protein CspA [Streptococcus parauberis NCFD 2020] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ TE+G DVF H SA+ S G +L EGQ V +D V+ Sbjct: 1 MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQSNGFKSLDEGQKVEFD-VEEGQ 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQAVNIVKL 66 >gi|331694459|ref|YP_004330698.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949148|gb|AEA22845.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans CB1190] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI + ++G DVF+H SA+ + G L E Q V ++ Q Sbjct: 1 MPQGTVKWFNAEKGFGFIATD---DNGPDVFVHYSAIQTDGFRTLEENQRVDFEASQGAK 57 Query: 62 NGKYSAENLKLV 73 A++++ + Sbjct: 58 G--PQADSVRPI 67 >gi|295700731|ref|YP_003608624.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|295439944|gb|ADG19113.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H S + ++G +L E Q V+++ Q Sbjct: 1 MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIQASGFKSLQENQKVSFEVKQG-P 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|159044762|ref|YP_001533556.1| putative cold-shock DNA-binding domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157912522|gb|ABV93955.1| putative cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL 12] Length = 68 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+G DVF+H SAV AGL L + Q VT+D + Sbjct: 1 MATGTVKWFNETKGYGFIAPDG---GSRDVFVHISAVERAGLTGLKDNQKVTFDI-EAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N+ L Sbjct: 57 DGRESATNIVL 67 >gi|300933731|ref|ZP_07148987.1| putative cold shock protein [Corynebacterium resistens DSM 45100] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H S + G L E Q V ++ + Sbjct: 1 MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQKVEFEIGEGAK 57 Query: 62 NGKYSAENLKLV 73 A+N+ + Sbjct: 58 G--PQAQNVTAL 67 >gi|229118682|ref|ZP_04248034.1| hypothetical protein bcere0017_49470 [Bacillus cereus Rock1-3] gi|228664874|gb|EEL20364.1| hypothetical protein bcere0017_49470 [Bacillus cereus Rock1-3] Length = 65 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V +D V + A G Sbjct: 2 QGKVKWFNAEKGFGFIERE----DGEDVFVHFSAIQQDGYKSLEEGQQVKFDIV-DGARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|15672150|ref|NP_266324.1| cold shock protein E [Lactococcus lactis subsp. lactis Il1403] gi|281490655|ref|YP_003352635.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|12723019|gb|AAK04266.1|AE006254_7 cold shock protein E [Lactococcus lactis subsp. lactis Il1403] gi|281374424|gb|ADA63945.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|326405743|gb|ADZ62814.1| cold shock protein [Lactococcus lactis subsp. lactis CV56] Length = 65 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFIT TE G+DVF H SA+ + G L EGQ VT+D V++ Sbjct: 1 MAQGTVKWFNATKGFGFIT----TEEGNDVFAHFSAIQTDGFKTLDEGQKVTFD-VEDGP 55 Query: 62 NGKYSAENLK 71 G A N++ Sbjct: 56 RGPQ-AVNIQ 64 >gi|317124225|ref|YP_004098337.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] gi|315588313|gb|ADU47610.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P G DVF+H S + + G +L E Q V +D Q Sbjct: 1 MAQGTVKWFNSEKGFGFIAP----TEGPDVFVHYSEIQTNGYRSLEENQAVEFDVEQGPK 56 Query: 62 NGKYSAENLKLV 73 A ++LV Sbjct: 57 G--PQAMRVRLV 66 >gi|156933606|ref|YP_001437522.1| hypothetical protein ESA_01428 [Cronobacter sakazakii ATCC BAA-894] gi|156531860|gb|ABU76686.1| hypothetical protein ESA_01428 [Cronobacter sakazakii ATCC BAA-894] Length = 90 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 26 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 81 Query: 64 KYSAENLKL 72 + + + Sbjct: 82 PAAVNVVAI 90 >gi|121535516|ref|ZP_01667325.1| cold-shock DNA-binding domain protein [Thermosinus carboxydivorans Nor1] gi|121305935|gb|EAX46868.1| cold-shock DNA-binding domain protein [Thermosinus carboxydivorans Nor1] Length = 68 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI E G DVF+H SA+ G +LTEGQ V +D V+ G Sbjct: 3 GKVKWFNAEKGYGFIERE----DGGDVFVHFSAIQEQGFKSLTEGQTVEFDIVEGT-RGP 57 Query: 65 YSAENLKLVP 74 +A +KLV Sbjct: 58 QAANVVKLVK 67 >gi|228993599|ref|ZP_04153507.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] gi|228999635|ref|ZP_04159212.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|229163862|ref|ZP_04291803.1| Cold shock protein cspB [Bacillus cereus R309803] gi|228619604|gb|EEK76489.1| Cold shock protein cspB [Bacillus cereus R309803] gi|228760161|gb|EEM09130.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|228766190|gb|EEM14836.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 MQTGKVKWFNGEKGFGFIEVE----GGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|83944389|ref|ZP_00956843.1| cold shock family protein [Sulfitobacter sp. EE-36] gi|83953430|ref|ZP_00962152.1| cold shock family protein [Sulfitobacter sp. NAS-14.1] gi|254486516|ref|ZP_05099721.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp. GAI101] gi|83842398|gb|EAP81566.1| cold shock family protein [Sulfitobacter sp. NAS-14.1] gi|83844712|gb|EAP82595.1| cold shock family protein [Sulfitobacter sp. EE-36] gi|214043385|gb|EEB84023.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp. GAI101] Length = 68 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G DVF+H SAV AGL L + Q VT+D + Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLADNQKVTFDI-EAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N+ L Sbjct: 57 DGRESASNIAL 67 >gi|217969672|ref|YP_002354906.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] gi|217506999|gb|ACK54010.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + +D+F H SA+ +G +L EG+ V++D Q Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAITMSGFKSLKEGEKVSFDVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|323488057|ref|ZP_08093310.1| cold shock protein [Planococcus donghaensis MPA1U2] gi|323398325|gb|EGA91118.1| cold shock protein [Planococcus donghaensis MPA1U2] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ + + Sbjct: 1 MQEGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIQGEGFKTLDEGQRVEFEVEEGNR 56 Query: 62 NGKYSAENLKLV 73 A N+ V Sbjct: 57 G--PQATNVTKV 66 >gi|293376790|ref|ZP_06623011.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis PC909] gi|325838186|ref|ZP_08166522.1| cold shock protein CspB [Turicibacter sp. HGF1] gi|292644572|gb|EFF62661.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis PC909] gi|325490857|gb|EGC93158.1| cold shock protein CspB [Turicibacter sp. HGF1] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKGYGFIT + +GD+VF H S + S G L EGQ V ++ Q + Sbjct: 1 MATGTVKWFNADKGYGFITVD----NGDEVFAHFSEIQSDGFKTLEEGQKVEFEITQGN- 55 Query: 62 NGKYSAENLKL 72 G ++ +KL Sbjct: 56 RGPQASHIVKL 66 >gi|257784693|ref|YP_003179910.1| cold-shock DNA-binding domain-containing protein [Atopobium parvulum DSM 20469] gi|257473200|gb|ACV51319.1| cold-shock DNA-binding domain protein [Atopobium parvulum DSM 20469] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NPDKGYGFI+ E GDD+F+H S + G L EGQ V ++ Sbjct: 1 MAQGTVKWFNPDKGYGFISRE----DGDDLFVHFSEIQMDGFKTLDEGQPVEFEIT-TGQ 55 Query: 62 NGKYSAENL 70 NGK A ++ Sbjct: 56 NGKLQASSV 64 >gi|225571084|ref|ZP_03780101.1| hypothetical protein CLOHYLEM_07184 [Clostridium hylemonae DSM 15053] gi|225160165|gb|EEG72784.1| hypothetical protein CLOHYLEM_07184 [Clostridium hylemonae DSM 15053] Length = 103 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFIT + G DVF+H SA+ S G L EGQ VT+D + Sbjct: 35 MNSGTVKWFNSQKGFGFITDDQ----GGDVFVHFSAIVSNGFKTLEEGQKVTFDTETDPK 90 Query: 62 N-GKYSAENL 70 + K A N+ Sbjct: 91 DSSKLKAVNV 100 >gi|213024594|ref|ZP_03339041.1| cold shock-like protein CspD [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 71 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQG-P 56 Query: 62 NGKYSAENLKLVPKS 76 G +++ + + ++ Sbjct: 57 KGNHASVIVPIEAEA 71 >gi|50120233|ref|YP_049400.1| cold shock protein CspE [Pectobacterium atrosepticum SCRI1043] gi|227114408|ref|ZP_03828064.1| cold shock protein CspE [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227329730|ref|ZP_03833754.1| cold shock protein CspE [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253687566|ref|YP_003016756.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261822402|ref|YP_003260508.1| cold shock protein CspE [Pectobacterium wasabiae WPP163] gi|49610759|emb|CAG74204.1| cold shock-like protein [Pectobacterium atrosepticum SCRI1043] gi|251754144|gb|ACT12220.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261606415|gb|ACX88901.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] Length = 69 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+ S G L EGQ V ++ + A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIQSNGFKTLAEGQRVEFEIT-DGAKG 60 Query: 64 KYSAEN 69 +A Sbjct: 61 PSAANV 66 >gi|322412804|gb|EFY03712.1| Major cold-shock protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323128184|gb|ADX25481.1| Major cold-shock protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI STE+G DVF H SA+ + G L EGQ V +D + Sbjct: 1 MAQGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVEFDVEEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--PQAVNITKL 66 >gi|94991342|ref|YP_599442.1| cold shock protein [Streptococcus pyogenes MGAS10270] gi|94544850|gb|ABF34898.1| Cold shock protein [Streptococcus pyogenes MGAS10270] Length = 69 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ E+G DVF H SA+ + G L EGQ V +D + Sbjct: 3 MAQGTVKWFNAEKGFGFIS----AENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 58 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 59 G--PQAVNITKL 68 >gi|313679366|ref|YP_004057105.1| cold-shock DNA-binding protein family [Oceanithermus profundus DSM 14977] gi|313152081|gb|ADR35932.1| cold-shock DNA-binding protein family [Oceanithermus profundus DSM 14977] Length = 71 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI E G DVF+H SA+ S+G L EG +V ++ V++ Sbjct: 1 MEKGKVKWFNAEKGYGFIERE----GGSDVFVHFSAINSSGFRTLNEGDVVEFE-VEDGP 55 Query: 62 NGKYSAENLKLVPKSS 77 G +A N+ +V + Sbjct: 56 KGPSAA-NVTVVESAG 70 >gi|152967548|ref|YP_001363332.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] gi|151362065|gb|ABS05068.1| putative cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P T+ G DVF+H SA+A G NL E V Y+ Q A Sbjct: 1 MAQGTVKWFNGEKGFGFIAP---TDGGPDVFVHYSAIAGNGFRNLEENDQVEYEVTQG-A 56 Query: 62 NGKYSAENLKL 72 G ++ +L Sbjct: 57 KGPQASNVTRL 67 >gi|312144475|ref|YP_003995921.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] gi|309388505|gb|ADO76385.1| cold-shock DNA-binding protein family [Halanaerobium praevalens DSM 2228] gi|311905126|gb|ADQ15567.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M++ G++KW++ KG+GFI E GDDVF H SA+ G NL EGQ V ++ V+ D Sbjct: 1 MIYTGTVKWFDGKKGFGFIERE----DGDDVFAHFSAIEEEGFKNLDEGQEVEFEIVEGD 56 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 57 -RGPQAANIVKL 67 >gi|294498556|ref|YP_003562256.1| cold shock protein [Bacillus megaterium QM B1551] gi|295703859|ref|YP_003596934.1| cold shock protein [Bacillus megaterium DSM 319] gi|294348493|gb|ADE68822.1| cold shock protein [Bacillus megaterium QM B1551] gi|294801518|gb|ADF38584.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI E GDDVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MTQGTVKWFNADKGFGFIE----IEGGDDVFVHFSAIQGEGFKSLEEGQKVTFDIEQGQ- 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGAQAANV 63 >gi|163857106|ref|YP_001631404.1| cold shock-like protein [Bordetella petrii DSM 12804] gi|163260834|emb|CAP43136.1| cold shock-like protein [Bordetella petrii] Length = 68 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFITP+ + D+F H S ++S G +L E Q VT++ Q Sbjct: 1 MATGIVKWFNAEKGYGFITPD---DGSKDLFAHYSEISSEGYKSLQENQRVTFEVGQGPK 57 Query: 62 NGKYSAENLKL 72 SA+N+K+ Sbjct: 58 G--PSAKNIKV 66 >gi|260431448|ref|ZP_05785419.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415276|gb|EEX08535.1| conserved domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 68 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE + G DVF+H S+V +GL L + Q VTY+ + Sbjct: 1 MPAGTVKWFNTTKGFGFIAPE---DGGKDVFVHISSVERSGLTGLADNQKVTYEL-RAGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA+N++LV Sbjct: 57 DGRESADNIELV 68 >gi|226310435|ref|YP_002770329.1| cold shock protein [Brevibacillus brevis NBRC 100599] gi|226093383|dbj|BAH41825.1| cold shock protein [Brevibacillus brevis NBRC 100599] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG +DVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MEQGTVKWFNAEKGFGFIEREGK----EDVFVHFSAIQGDGFKSLDEGQKVTFDVEQGQR 56 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 57 G--PQATNVQKV 66 >gi|163735236|ref|ZP_02142671.1| cold shock protein CspA [Roseobacter litoralis Och 149] gi|161391450|gb|EDQ15784.1| cold shock protein CspA [Roseobacter litoralis Och 149] Length = 68 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ G D+F+H SAV AGL L + Q VT++ + Sbjct: 1 MASGTVKWFNTTKGYGFIAPD---NGGKDIFVHISAVERAGLTGLADNQKVTFEI-ETSR 56 Query: 62 NGKYSAENLKL 72 +G+ SA +L + Sbjct: 57 DGRESASDLAI 67 >gi|328957165|ref|YP_004374551.1| putative cold shock protein, CspA family [Carnobacterium sp. 17-4] gi|328673489|gb|AEB29535.1| putative cold shock protein, CspA family [Carnobacterium sp. 17-4] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG+ DDVF+H SA+ G +L EGQ VT+D + + Sbjct: 1 MEQGTVKWFNAEKGFGFIEREGA----DDVFVHFSAIQGEGFKSLEEGQAVTFDVEEGN- 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGPQAANV 63 >gi|104783080|ref|YP_609578.1| cold shock protein [Pseudomonas entomophila L48] gi|95112067|emb|CAK16794.1| putative cold shock protein [Pseudomonas entomophila L48] Length = 196 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D Sbjct: 130 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMHRDKG- 184 Query: 64 KYSAENLKLVPK 75 AE++ V + Sbjct: 185 -LQAEDVVAVSR 195 >gi|323139562|ref|ZP_08074607.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] gi|322395181|gb|EFX97737.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] Length = 69 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AG+ +L+EGQ ++YD + + Sbjct: 1 MFYGTVKWFNAQKGFGFIQPD---DGGKDVFVHISAVEQAGMRDLSEGQKLSYDVIDDRR 57 Query: 62 NGKYSAENL 70 +GK SA L Sbjct: 58 SGKASAGKL 66 >gi|309388512|gb|ADO76392.1| cold-shock DNA-binding protein family [Halanaerobium praevalens DSM 2228] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M++ G++KW++ KG+GFI E GDDVF H SA+ G NL EGQ V ++ V+ D Sbjct: 1 MIYTGTVKWFDGKKGFGFIERE----DGDDVFAHFSAIEEEGFKNLEEGQEVEFEIVEGD 56 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 57 -RGPQAANIVKL 67 >gi|296103113|ref|YP_003613259.1| DNA replication inhibitor [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057572|gb|ADF62310.1| DNA replication inhibitor [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 73 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|91783753|ref|YP_558959.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|187924184|ref|YP_001895826.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|296163324|ref|ZP_06846084.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|91687707|gb|ABE30907.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] gi|187715378|gb|ACD16602.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|295886416|gb|EFG66274.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H S + S G +L E Q V+++ Q Sbjct: 1 MPTGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRSEGFKSLQENQKVSFEIKQG-P 56 Query: 62 NGKYSAE 68 GK +A+ Sbjct: 57 KGKQAAD 63 >gi|320449421|ref|YP_004201517.1| cold shock protein, CSD family [Thermus scotoductus SA-01] gi|320149590|gb|ADW20968.1| cold shock protein, CSD family [Thermus scotoductus SA-01] Length = 73 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI EG T DVF+H SA+ + G L EG +VT+D Sbjct: 1 MQKGRVKWFNAEKGYGFIEREGDT----DVFVHFSAINAKGFRTLNEGDIVTFDVEPGKN 56 Query: 62 NGKYSAENLKLVPKS 76 A N+ +V + Sbjct: 57 GKGPQAVNVTVVEPA 71 >gi|254512032|ref|ZP_05124099.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae bacterium KLH11] gi|221535743|gb|EEE38731.1| putative 'Cold-shock' DNA-binding domain [Rhodobacteraceae bacterium KLH11] Length = 68 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE E G DVF+H SAV +GL L + Q VTY+ + Sbjct: 1 MPAGTVKWFNTTKGFGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVTYEL-RAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA+N++L Sbjct: 57 DGRESADNIEL 67 >gi|254381183|ref|ZP_04996548.1| cold shock protein scoF [Streptomyces sp. Mg1] gi|254381243|ref|ZP_04996608.1| cold shock protein scoF [Streptomyces sp. Mg1] gi|254381451|ref|ZP_04996815.1| cold shock protein scoF [Streptomyces sp. Mg1] gi|194340093|gb|EDX21059.1| cold shock protein scoF [Streptomyces sp. Mg1] gi|194340153|gb|EDX21119.1| cold shock protein scoF [Streptomyces sp. Mg1] gi|194340360|gb|EDX21326.1| cold shock protein scoF [Streptomyces sp. Mg1] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H SA+ S+G L EGQ+VT+D Q Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSAINSSGFRELQEGQVVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|328952776|ref|YP_004370110.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453100|gb|AEB08929.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans DSM 11109] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KG+GFI+ E SG DVF+H SA+ + G +L+E Q V ++ VQ Sbjct: 1 MKENGTVKWFNNSKGFGFISRE----SGPDVFVHHSAIQTDGYRSLSENQAVEFEVVQGP 56 Query: 61 ANGKYSAENLKLV 73 A+N+ ++ Sbjct: 57 KG--VQAQNVVIL 67 >gi|319944075|ref|ZP_08018354.1| cold shock transcription regulator protein [Lautropia mirabilis ATCC 51599] gi|319742652|gb|EFV95060.1| cold shock transcription regulator protein [Lautropia mirabilis ATCC 51599] Length = 68 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E G+D+F H S+V + G L EGQ V++D VQ Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSSVQTQGFKTLKEGQKVSFDVVQG-P 56 Query: 62 NGKYSAE 68 GK ++ Sbjct: 57 KGKQASN 63 >gi|294498464|ref|YP_003562164.1| cold shock protein [Bacillus megaterium QM B1551] gi|294500157|ref|YP_003563857.1| cold shock protein [Bacillus megaterium QM B1551] gi|295705519|ref|YP_003598594.1| cold shock protein [Bacillus megaterium DSM 319] gi|294348401|gb|ADE68730.1| cold shock protein [Bacillus megaterium QM B1551] gi|294350094|gb|ADE70423.1| cold shock protein [Bacillus megaterium QM B1551] gi|294803178|gb|ADF40244.1| cold shock protein [Bacillus megaterium DSM 319] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI E GDDVF+H S++ G +L EGQ VT+D Q Sbjct: 1 MEQGTVKWFNADKGFGFIE----IEGGDDVFVHFSSIQGEGFKSLEEGQKVTFDIEQGQ- 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 RGAQAANVHKV 66 >gi|72160788|ref|YP_288445.1| cold-shock DNA-binding protein family protein [Thermobifida fusca YX] gi|71914520|gb|AAZ54422.1| cold-shock DNA-binding protein family [Thermobifida fusca YX] Length = 67 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI +G G DVF+H SA+A G NL E Q V ++ V Sbjct: 1 MAQGTVKWFNSEKGFGFIAVDG---GGPDVFVHYSAIAGTGFRNLEENQAVEFEIV-PGP 56 Query: 62 NGKYSAEN 69 G +A+ Sbjct: 57 KGPQAADV 64 >gi|312882977|ref|ZP_07742708.1| putative cold shock protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309369137|gb|EFP96658.1| putative cold shock protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 70 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFITPE G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 6 NGTVKWFNEEKGFGFITPE---NGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQ-KG 61 Query: 64 KYSAENL 70 +A + Sbjct: 62 PQAANVV 68 >gi|288959551|ref|YP_003449892.1| cold shock protein [Azospirillum sp. B510] gi|288911859|dbj|BAI73348.1| cold shock protein [Azospirillum sp. B510] Length = 69 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE DVF+H +AV +GL L+EGQ V ++ + + Sbjct: 1 MTNGTVKWFNTTKGYGFIAPEA---GAKDVFVHITAVQRSGLHALSEGQRVQFEVARGN- 56 Query: 62 NGKYSAENLKLVP 74 NGK SA N+ +V Sbjct: 57 NGKDSAVNISVVE 69 >gi|315639698|ref|ZP_07894837.1| cold shock protein CspA [Enterococcus italicus DSM 15952] gi|315484475|gb|EFU74932.1| cold shock protein CspA [Enterococcus italicus DSM 15952] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFIT E G+DVF+H SA+ G L EGQ VT+D + Sbjct: 1 MNNGTVKWFNSEKGFGFIT----AEDGNDVFVHFSAIQGDGFKTLEEGQAVTFDVEEGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQATNVE 64 >gi|28377002|ref|NP_783894.1| cold shock protein CspL [Lactobacillus plantarum WCFS1] gi|254555197|ref|YP_003061614.1| cold shock protein CspL [Lactobacillus plantarum JDM1] gi|308179219|ref|YP_003923347.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ST-III] gi|2493769|sp|P96349|CSP2_LACPL RecName: Full=Cold shock protein 2 gi|1869948|emb|CAA70139.1| cold shock protein [Lactobacillus plantarum] gi|9968448|emb|CAC06093.1| cold shock protein [Lactobacillus plantarum] gi|28269833|emb|CAD62730.1| cold shock protein CspL [Lactobacillus plantarum WCFS1] gi|254044124|gb|ACT60917.1| cold shock protein CspL [Lactobacillus plantarum JDM1] gi|308044710|gb|ADN97253.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT E G DVF+H SA+ + G L EGQ VTYD Q D Sbjct: 1 MKNGTVKWFNADKGFGFIT----GEDGTDVFVHFSAIQTDGFKTLDEGQKVTYDEEQGDR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQATNVQ 64 >gi|172058938|ref|YP_001815398.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171991459|gb|ACB62381.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum 255-15] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V ++ + A Sbjct: 1 MNTGKVKWFNAEKGFGFIEVE----GGEDVFVHFSAITGEGFKSLDEGQEVEFEITEG-A 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGAQAANVVKL 66 >gi|317127375|ref|YP_004093657.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472323|gb|ADU28926.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MQQGTVKWFNAEKGFGFIEVE----GGDDVFVHFSAIQGEGFKSLDEGQAVTFDVEQGQR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--PQATNV 63 >gi|218778358|ref|YP_002429676.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759742|gb|ACL02208.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 66 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI E G DVF+H SA++ +G L EG V++D V+ Sbjct: 1 MANGTVKWFNDSKGYGFIERE----EGGDVFVHYSAISGSGFKTLAEGDRVSFD-VEEGQ 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 KGPAAANVIKL 66 >gi|282856781|ref|ZP_06266042.1| conserved domain protein [Pyramidobacter piscolens W5455] gi|282585404|gb|EFB90711.1| conserved domain protein [Pyramidobacter piscolens W5455] Length = 70 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFIT TE G DVF+H SA+ G +L E + V +D V + G Sbjct: 7 KGKVKWFNSTKGFGFIT----TEEGKDVFVHFSAIKMDGYKSLEENEEVEFDVV-DGEKG 61 Query: 64 KYSAENLKL 72 +A ++L Sbjct: 62 PQAANVVRL 70 >gi|91785349|ref|YP_560555.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|187925500|ref|YP_001897142.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|209516559|ref|ZP_03265413.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|296159494|ref|ZP_06842318.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|307731142|ref|YP_003908366.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1003] gi|323527488|ref|YP_004229641.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1001] gi|91689303|gb|ABE32503.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] gi|187716694|gb|ACD17918.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|209503000|gb|EEA03002.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295890202|gb|EFG69996.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|307585677|gb|ADN59075.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003] gi|323384490|gb|ADX56581.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001] Length = 67 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+G G+D+F H S + + G L E Q VT++ V+ Sbjct: 1 METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRTEGFKTLQENQKVTFE-VKTGP 56 Query: 62 NGKYSAENLKLV 73 GK +A N+K V Sbjct: 57 KGKQAA-NIKPV 67 >gi|53717183|ref|YP_105587.1| cold-shock domain-contain protein [Burkholderia mallei ATCC 23344] gi|53722389|ref|YP_111374.1| cold shock-like protein [Burkholderia pseudomallei K96243] gi|67640593|ref|ZP_00439394.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8 horse 4] gi|76818479|ref|YP_335547.1| cold shock transcriptional regulator protein [Burkholderia pseudomallei 1710b] gi|121596928|ref|YP_990092.1| cold-shock domain-contain protein [Burkholderia mallei SAVP1] gi|124383143|ref|YP_001023992.1| cold-shock domain-contain protein [Burkholderia mallei NCTC 10229] gi|126444073|ref|YP_001062939.1| hypothetical protein BURPS668_A1944 [Burkholderia pseudomallei 668] gi|126447704|ref|YP_001078627.1| cold-shock domain-contain protein [Burkholderia mallei NCTC 10247] gi|126455982|ref|YP_001075887.1| cold-shock domain-contain protein [Burkholderia pseudomallei 1106a] gi|166999526|ref|ZP_02265363.1| cold-shock DNA-binding domain protein [Burkholderia mallei PRL-20] gi|167723959|ref|ZP_02407195.1| cold-shock domain family protein [Burkholderia pseudomallei DM98] gi|167742930|ref|ZP_02415704.1| cold-shock domain family protein [Burkholderia pseudomallei 14] gi|167820105|ref|ZP_02451785.1| cold-shock domain family protein [Burkholderia pseudomallei 91] gi|167828481|ref|ZP_02459952.1| cold-shock domain family protein [Burkholderia pseudomallei 9] gi|167849936|ref|ZP_02475444.1| cold-shock domain family protein [Burkholderia pseudomallei B7210] gi|167898541|ref|ZP_02485942.1| cold-shock domain family protein [Burkholderia pseudomallei 7894] gi|167906890|ref|ZP_02494095.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC 13177] gi|167915247|ref|ZP_02502338.1| cold-shock domain family protein [Burkholderia pseudomallei 112] gi|167923078|ref|ZP_02510169.1| cold-shock domain family protein [Burkholderia pseudomallei BCC215] gi|217425337|ref|ZP_03456831.1| cold-shock domain family protein [Burkholderia pseudomallei 576] gi|226199127|ref|ZP_03794689.1| cold-shock domain family protein [Burkholderia pseudomallei Pakistan 9] gi|237510263|ref|ZP_04522978.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|242312121|ref|ZP_04811138.1| cold-shock domain family protein [Burkholderia pseudomallei 1106b] gi|254176187|ref|ZP_04882845.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399] gi|254183753|ref|ZP_04890345.1| cold-shock domain family protein [Burkholderia pseudomallei 1655] gi|254186667|ref|ZP_04893183.1| cold-shock domain family protein [Burkholderia pseudomallei Pasteur 52237] gi|254194434|ref|ZP_04900866.1| cold-shock domain family protein [Burkholderia pseudomallei S13] gi|254200381|ref|ZP_04906746.1| cold-shock domain family protein [Burkholderia mallei FMH] gi|254263480|ref|ZP_04954345.1| cold-shock domain family protein [Burkholderia pseudomallei 1710a] gi|254301649|ref|ZP_04969093.1| cold-shock domain family protein [Burkholderia pseudomallei 406e] gi|254356632|ref|ZP_04972907.1| cold-shock domain family protein [Burkholderia mallei 2002721280] gi|52212803|emb|CAH38835.1| putative cold shock-like protein [Burkholderia pseudomallei K96243] gi|52423153|gb|AAU46723.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344] gi|76582952|gb|ABA52426.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|121224726|gb|ABM48257.1| cold-shock domain family protein [Burkholderia mallei SAVP1] gi|124291163|gb|ABN00433.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC 10229] gi|126223564|gb|ABN87069.1| conserved domain protein [Burkholderia pseudomallei 668] gi|126229750|gb|ABN93163.1| cold-shock domain family protein [Burkholderia pseudomallei 1106a] gi|126240558|gb|ABO03670.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC 10247] gi|147747993|gb|EDK55068.1| cold-shock domain family protein [Burkholderia mallei FMH] gi|148025659|gb|EDK83782.1| cold-shock domain family protein [Burkholderia mallei 2002721280] gi|157810787|gb|EDO87957.1| cold-shock domain family protein [Burkholderia pseudomallei 406e] gi|157934351|gb|EDO90021.1| cold-shock domain family protein [Burkholderia pseudomallei Pasteur 52237] gi|160697229|gb|EDP87199.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399] gi|169651185|gb|EDS83878.1| cold-shock domain family protein [Burkholderia pseudomallei S13] gi|184214286|gb|EDU11329.1| cold-shock domain family protein [Burkholderia pseudomallei 1655] gi|217391588|gb|EEC31616.1| cold-shock domain family protein [Burkholderia pseudomallei 576] gi|225928902|gb|EEH24927.1| cold-shock domain family protein [Burkholderia pseudomallei Pakistan 9] gi|235002468|gb|EEP51892.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|238521343|gb|EEP84795.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8 horse 4] gi|242135360|gb|EES21763.1| cold-shock domain family protein [Burkholderia pseudomallei 1106b] gi|243064365|gb|EES46551.1| cold-shock DNA-binding domain protein [Burkholderia mallei PRL-20] gi|254214482|gb|EET03867.1| cold-shock domain family protein [Burkholderia pseudomallei 1710a] Length = 67 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ GDD+F H S + S G L E Q V+++ + Sbjct: 1 MDTGTVKWFNETKGFGFITPDS---GGDDLFAHFSEIRSEGYKTLAENQKVSFE-TKRGP 56 Query: 62 NGKYSAENLKLV 73 G +A N+K + Sbjct: 57 KGLQAA-NIKPL 67 >gi|224824174|ref|ZP_03697282.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] gi|224603593|gb|EEG09768.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] Length = 67 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E GDD+F H S + + G L E Q V++D Sbjct: 1 MATGTVKWFNDSKGFGFITPD---EGGDDIFAHFSQIKANGFKTLAENQRVSFDVTMGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--KQASNIQPL 67 >gi|163733825|ref|ZP_02141267.1| cold shock protein CspA-related protein, putative [Roseobacter litoralis Och 149] gi|161392936|gb|EDQ17263.1| cold shock protein CspA-related protein, putative [Roseobacter litoralis Och 149] Length = 68 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G DVF+H SAV AGL L++ Q VT+D + Sbjct: 1 MATGTVKWFNSTKGFGFIAPDG---GSKDVFVHISAVERAGLTGLSDDQKVTFDI-EAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESASNLAL 67 >gi|134300024|ref|YP_001113520.1| cold-shock DNA-binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052724|gb|ABO50695.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens MI-1] Length = 65 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI +E G DVF+H SA+ S G L EG+ V ++ ++ G Sbjct: 2 QGKVKWFNANKGYGFIE----SEIGTDVFVHYSAIQSEGYRTLEEGEPVDFEIIEGT-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVIKL 65 >gi|307729849|ref|YP_003907073.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1003] gi|323525902|ref|YP_004228055.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1001] gi|307584384|gb|ADN57782.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003] gi|323382904|gb|ADX54995.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001] Length = 67 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H S + + G +L E Q V+++ Q Sbjct: 1 MPTGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRAEGFKSLQENQKVSFEVKQG-P 56 Query: 62 NGKYSAE 68 GK +A+ Sbjct: 57 KGKQAAD 63 >gi|52080703|ref|YP_079494.1| cold-shock protein [Bacillus licheniformis ATCC 14580] gi|52786076|ref|YP_091905.1| CspD [Bacillus licheniformis ATCC 14580] gi|154686439|ref|YP_001421600.1| CspD [Bacillus amyloliquefaciens FZB42] gi|296329499|ref|ZP_06871986.1| CspD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674824|ref|YP_003866496.1| RNA-helicase co-factor [Bacillus subtilis subsp. spizizenii str. W23] gi|308173984|ref|YP_003920689.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus amyloliquefaciens DSM 7] gi|311068704|ref|YP_003973627.1| RNA-helicase co-factor [Bacillus atrophaeus 1942] gi|319645338|ref|ZP_07999571.1| cold shock protein cspD [Bacillus sp. BT1B_CT2] gi|52003914|gb|AAU23856.1| cold-shock protein [Bacillus licheniformis ATCC 14580] gi|52348578|gb|AAU41212.1| CspD [Bacillus licheniformis ATCC 14580] gi|154352290|gb|ABS74369.1| CspD [Bacillus amyloliquefaciens FZB42] gi|296153381|gb|EFG94243.1| CspD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413068|gb|ADM38187.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus subtilis subsp. spizizenii str. W23] gi|307606848|emb|CBI43219.1| cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus amyloliquefaciens DSM 7] gi|310869221|gb|ADP32696.1| RNA-helicase co-factor [Bacillus atrophaeus 1942] gi|317393147|gb|EFV73941.1| cold shock protein cspD [Bacillus sp. BT1B_CT2] gi|328553088|gb|AEB23580.1| RNA-helicase co-factor [Bacillus amyloliquefaciens TA208] gi|328912139|gb|AEB63735.1| Cold-shock protein, molecular chaperone, RNA-helicase co-factor [Bacillus amyloliquefaciens LL3] Length = 66 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E GDDVF+H +A+ G +L EGQ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFTAIEGEGYKSLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLKL 72 G ++ +KL Sbjct: 56 RGPQASNVVKL 66 >gi|299821691|ref|ZP_07053579.1| cold shock protein CspA [Listeria grayi DSM 20601] gi|299817356|gb|EFI84592.1| cold shock protein CspA [Listeria grayi DSM 20601] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI TE+G+D+F H +A+ G L EGQ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGYGFIE----TENGEDIFAHFTAIQGDGYKTLEEGQSVSFEVVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAANIEKL 66 >gi|261345563|ref|ZP_05973207.1| conserved domain protein [Providencia rustigianii DSM 4541] gi|282566611|gb|EFB72146.1| conserved domain protein [Providencia rustigianii DSM 4541] Length = 70 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP + DVF+H SA+ S L EGQ V++ V++ A G Sbjct: 6 TGLVKWFNDDKGFGFITP---ADGSKDVFVHFSAIQSDDFKTLHEGQKVSFS-VESGAKG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVVAL 70 >gi|228475724|ref|ZP_04060442.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|228270506|gb|EEK11941.1| conserved hypothetical protein [Staphylococcus hominis SK119] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E GDDVF+H S +A+ G L EGQ V +D + Sbjct: 1 MNNGTVKWFNAEKGFGFIERE----DGDDVFVHFSGIATDGYKTLEEGQKVEFDITEGQ- 55 Query: 62 NGKYSAENLKL 72 GK + + + Sbjct: 56 RGKQATNVVPV 66 >gi|226312661|ref|YP_002772555.1| cold shock protein [Brevibacillus brevis NBRC 100599] gi|226095609|dbj|BAH44051.1| cold shock protein [Brevibacillus brevis NBRC 100599] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ VQ + Sbjct: 1 MQTNGTVKWFNAEKGFGFIQVE----GGDDVFVHFSAIQGDGFKTLDEGQKVQFNIVQGN 56 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 57 -RGPQAENVVKL 67 >gi|304317414|ref|YP_003852559.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|323704655|ref|ZP_08116233.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|302778916|gb|ADL69475.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|323536117|gb|EGB25890.1| cold-shock DNA-binding domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V +D V+ + Sbjct: 1 MVRGKVKWFNAEKGYGFIERE----GGSDVFVHYSAIEQDGFKTLEEGQEVEFDIVEAE- 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 KGPQAANVKKV 66 >gi|114776511|ref|ZP_01451556.1| Cold-shock protein, DNA-binding [Mariprofundus ferrooxydans PV-1] gi|114553341|gb|EAU55739.1| Cold-shock protein, DNA-binding [Mariprofundus ferrooxydans PV-1] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+ + + GDDVF+H S++ G +L EGQLV +D V+N A Sbjct: 1 MATGTVKWFNDTKGFGFISQD---DGGDDVFVHFSSIQGDGFKSLAEGQLVEFD-VENGA 56 Query: 62 NGKYSAEN 69 G ++ Sbjct: 57 KGPQASNV 64 >gi|307298799|ref|ZP_07578601.1| cold-shock DNA-binding domain protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915224|gb|EFN45609.1| cold-shock DNA-binding domain protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFIT + G DVF+H SA+ G L EGQ V ++ V++ G Sbjct: 2 TGTVKWFNGTKGYGFITKD----DGGDVFVHFSAIEMDGFKTLDEGQRVEFE-VEDGPKG 56 Query: 64 KYSAEN 69 +A+ Sbjct: 57 PQAAKV 62 >gi|73539164|ref|YP_299531.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|94314737|ref|YP_587946.1| cold-shock DNA-binding protein family [Cupriavidus metallidurans CH34] gi|116693962|ref|YP_728173.1| cold-shock protein, DNA-binding [Ralstonia eutropha H16] gi|188591849|ref|YP_001796447.1| cold shock-like protein [Cupriavidus taiwanensis LMG 19424] gi|72122501|gb|AAZ64687.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] gi|93358589|gb|ABF12677.1| cold-shock DNA-binding protein family [Cupriavidus metallidurans CH34] gi|113528461|emb|CAJ94808.1| Cold-shock protein, DNA-binding [Ralstonia eutropha H16] gi|170938223|emb|CAP63208.1| Cold shock-like protein [Cupriavidus taiwanensis LMG 19424] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G D+F H S + +G L +GQ VT++ Q Sbjct: 1 MATGTVKWFNETKGFGFITPD---DGGADLFAHFSEIQGSGFKTLKDGQRVTFEVKQGPK 57 Query: 62 NGKYSA 67 + SA Sbjct: 58 GLQASA 63 >gi|319891930|ref|YP_004148805.1| Cold shock protein CspC [Staphylococcus pseudintermedius HKU10-03] gi|317161626|gb|ADV05169.1| Cold shock protein CspC [Staphylococcus pseudintermedius HKU10-03] gi|323464979|gb|ADX77132.1| cold shock protein B [Staphylococcus pseudintermedius ED99] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E +GDDVF+H SA+ G +L EGQ V +D V+ + Sbjct: 1 MNNGTVKWFNAEKGFGFIERE----NGDDVFVHFSAIVGDGYKSLEEGQNVDFDIVEGE- 55 Query: 62 NGKYSAENLKL 72 G +A +K+ Sbjct: 56 RGAQAANVVKM 66 >gi|150389111|ref|YP_001319160.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948973|gb|ABR47501.1| putative cold-shock DNA-binding domain protein [Alkaliphilus metalliredigens QYMF] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V+ + Sbjct: 1 MKTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAITGDGFKTLEEGQKVEFNVVEGNR 56 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 57 G--PQAENVAKL 66 >gi|81429174|ref|YP_396175.1| cold shock protein CspA family protein [Lactobacillus sakei subsp. sakei 23K] gi|78610817|emb|CAI55868.1| Similar to cold shock protein, CspA family [Lactobacillus sakei subsp. sakei 23K] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGF+T E G DVF+H SA+ G L EGQ V++D ++D Sbjct: 1 MENGTVKWFNAEKGYGFVTRE----DGSDVFVHFSAIQGEGYKTLEEGQSVSFDIEESDR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--PQAVNV 63 >gi|315644644|ref|ZP_07897776.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|329928423|ref|ZP_08282293.1| major cold shock protein CspA [Paenibacillus sp. HGF5] gi|315280151|gb|EFU43448.1| cold-shock DNA-binding domain protein [Paenibacillus vortex V453] gi|328937859|gb|EGG34265.1| major cold shock protein CspA [Paenibacillus sp. HGF5] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V ++ VQ + Sbjct: 1 MQTGTVKWFNAEKGFGFIEVE----GGEDVFVHFSAITGDGFKSLDEGQRVEFNVVQGNR 56 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 57 G--QQAENV 63 >gi|74316873|ref|YP_314613.1| cold-shock DNA-binding protein family protein [Thiobacillus denitrificans ATCC 25259] gi|74056368|gb|AAZ96808.1| Possible Cold-shock DNA-binding domain protein [Thiobacillus denitrificans ATCC 25259] Length = 68 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ KG+GFITP+ + G+DVF H SA+ + G L EGQ V+++ Q Sbjct: 1 MATGTVKWFSDAKGFGFITPD---DGGEDVFAHFSAIQTNGFKTLKEGQKVSFEVSQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|299065937|emb|CBJ37118.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum CMR15] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V +D Q+ Sbjct: 1 MANGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQSPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQATNIQ 65 >gi|212633937|ref|YP_002310462.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3] gi|212555421|gb|ACJ27875.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3] Length = 70 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFIT + G DVF+H A+AS G L EGQ V++D Q G Sbjct: 6 TGIVKWFNEDKGFGFITQD---NGGADVFVHFRAIASDGFKTLAEGQKVSFDLEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + + Sbjct: 62 PQAANVVAI 70 >gi|229917667|ref|YP_002886313.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b] gi|229469096|gb|ACQ70868.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KGYGFI E GDDVF+H SA+ G L EGQ VT++ + A Sbjct: 1 MNTGKVKWFNSEKGYGFIE----MEGGDDVFVHFSAIQGDGFKTLEEGQEVTFEIT-DGA 55 Query: 62 NGKYSAENLKL 72 G ++ K+ Sbjct: 56 RGPQASNVEKI 66 >gi|226228145|ref|YP_002762251.1| cold shock protein [Gemmatimonas aurantiaca T-27] gi|226091336|dbj|BAH39781.1| cold shock protein [Gemmatimonas aurantiaca T-27] Length = 70 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N KG+GFITP+ + D F+H SA+ G L EG+ V +D VQ Sbjct: 1 MRTTGKVKWFNDAKGFGFITPD---DGSKDCFVHHSAIQGGGFRTLAEGERVEFDIVQGQ 57 Query: 61 ANGKYSAENLKLV 73 +AE + V Sbjct: 58 KG--PAAEQVTKV 68 >gi|162149571|ref|YP_001604032.1| cold shock protein [Gluconacetobacter diazotrophicus PAl 5] gi|209544805|ref|YP_002277034.1| cold-shock DNA-binding domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|148530010|gb|ABQ82211.1| cold shock protein [Gluconacetobacter diazotrophicus PAl 5] gi|161788148|emb|CAP57753.1| putative cold shock protein [Gluconacetobacter diazotrophicus PAl 5] gi|209532482|gb|ACI52419.1| cold-shock DNA-binding domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 68 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + DVF+H SAV AGL L EGQ ++Y+ + Sbjct: 1 MATGTVKWFNSQKGFGFIQP---NDGSSDVFVHISAVERAGLRGLNEGQTISYEL-ETGR 56 Query: 62 NGKYSAENLK 71 N K SA NLK Sbjct: 57 NNKTSAVNLK 66 >gi|110678556|ref|YP_681563.1| cold shock protein CspA [Roseobacter denitrificans OCh 114] gi|109454672|gb|ABG30877.1| cold shock protein CspA [Roseobacter denitrificans OCh 114] Length = 68 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ G D+F+H SAV AGL L + Q VT++ + Sbjct: 1 MASGTVKWFNTTKGYGFIAPDS---GGKDIFVHISAVERAGLTGLADNQKVTFEI-ETSR 56 Query: 62 NGKYSAENLKL 72 +G+ SA +L + Sbjct: 57 DGRESASDLAI 67 >gi|90414568|ref|ZP_01222542.1| putative cold shock-like protein [Photobacterium profundum 3TCK] gi|90414570|ref|ZP_01222544.1| putative cold shock-like protein [Photobacterium profundum 3TCK] gi|90324375|gb|EAS40941.1| putative cold shock-like protein [Photobacterium profundum 3TCK] gi|90324377|gb|EAS40943.1| putative cold shock-like protein [Photobacterium profundum 3TCK] Length = 69 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V++D Q G Sbjct: 5 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQGQ-KG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PQAANVVAL 69 >gi|294500155|ref|YP_003563855.1| cold shock protein [Bacillus megaterium QM B1551] gi|295705517|ref|YP_003598592.1| cold shock protein [Bacillus megaterium DSM 319] gi|294350092|gb|ADE70421.1| cold shock protein [Bacillus megaterium QM B1551] gi|294803176|gb|ADF40242.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI E +GDDVF+H SA+ S G +L EGQ VT+D Q Sbjct: 1 MEQGKVKWFNAEKGFGFIERE----NGDDVFVHFSAIQSEGFKSLDEGQAVTFDVEQGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQASNVQ 64 >gi|323703019|ref|ZP_08114675.1| cold-shock DNA-binding domain protein [Desulfotomaculum nigrificans DSM 574] gi|323532032|gb|EGB21915.1| cold-shock DNA-binding domain protein [Desulfotomaculum nigrificans DSM 574] Length = 65 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI E G DVF+H SA+ G +LTEGQ V +D V+ A G Sbjct: 3 GKVKWFNAEKGYGFIERE----EGGDVFVHFSAIQEEGFKSLTEGQEVEFDIVEG-ARGP 57 Query: 65 YSAENLKL 72 +A +KL Sbjct: 58 QAANVVKL 65 >gi|110834144|ref|YP_693003.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2] gi|110647255|emb|CAL16731.1| cold-shock domain family protein [Alcanivorax borkumensis SK2] Length = 84 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 5/77 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGF+ P+ E G+D+F+H S + G +L GQ V YD A Sbjct: 1 MATGRVKWFNNAKGYGFVRPD---EGGEDLFVHYSYIQMDGYKSLKAGQPVEYDV--QPA 55 Query: 62 NGKYSAENLKLVPKSSN 78 N Y A NL+ ++SN Sbjct: 56 NKGYHAINLRTDEEASN 72 >gi|13488430|ref|NP_109437.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|14028184|dbj|BAB54776.1| cold shock protein [Mesorhizobium loti MAFF303099] Length = 69 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ + Y+ ++ Sbjct: 1 MTTGTVKWFNSTKGFGFIQPDS---GGADAFVHISAVERAGMREIVEGQKIGYEMERDSK 57 Query: 62 NGKYSAENLKLV 73 +GK SA NL+ V Sbjct: 58 SGKMSACNLQAV 69 >gi|332162229|ref|YP_004298806.1| cold shock-like protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606292|emb|CBY27790.1| cold shock protein CspD [Yersinia enterocolitica subsp. palearctica Y11] gi|325666459|gb|ADZ43103.1| cold shock-like protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860565|emb|CBX70864.1| cold shock-like protein cspD [Yersinia enterocolitica W22703] Length = 85 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ+V + Q Sbjct: 1 METGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQMVNFAVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|289705593|ref|ZP_06501984.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58] gi|289557674|gb|EFD50974.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI PE ++ DVF+H SA+ +G L E V ++ Q+ Sbjct: 1 MAVGTVKWFNAEKGYGFIAPE---DNSADVFVHFSAIQGSGFKELQENDRVEFE-TQDGP 56 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 57 KGLQAANVTKL 67 >gi|260599717|ref|YP_003212288.1| RNA chaperone/anti-terminator [Cronobacter turicensis z3032] gi|260218894|emb|CBA34249.1| Cold shock protein cspA [Cronobacter turicensis z3032] Length = 70 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFITP+ DVF+H SA+ G L EGQ V++ V++ A G Sbjct: 6 TGLVKWFNAEKGFGFITPD---NGSKDVFVHFSAIQDNGFKTLEEGQKVSF-TVESGAKG 61 Query: 64 KYSAENLKL 72 +A + Sbjct: 62 PAAANVTAI 70 >gi|92112688|ref|YP_572616.1| cold-shock DNA-binding protein family protein [Chromohalobacter salexigens DSM 3043] gi|91795778|gb|ABE57917.1| cold-shock DNA-binding protein family [Chromohalobacter salexigens DSM 3043] Length = 155 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N +KGYGFIT + SG+DVF+H A+ G L EGQ V Y V+N+ Sbjct: 89 REIGEVKWFNVNKGYGFITRD----SGEDVFVHFRAIRGKGHRTLAEGQKVRYHVVENER 144 Query: 62 NGKYSAENLKLV 73 A+++ ++ Sbjct: 145 G--LQADDVTVI 154 >gi|77462500|ref|YP_352004.1| cold-shock DNA-binding protein family protein [Rhodobacter sphaeroides 2.4.1] gi|77386918|gb|ABA78103.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides 2.4.1] Length = 77 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G DVF+H +A+ AG+ L +GQ V++D + D Sbjct: 10 MANGTVKWFNATKGFGFIAPAG---GSKDVFVHVTALERAGIRQLDDGQAVSFDL-ERDR 65 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 66 NGRESATNLVL 76 >gi|319651118|ref|ZP_08005251.1| cold shock protein [Bacillus sp. 2_A_57_CT2] gi|317397172|gb|EFV77877.1| cold shock protein [Bacillus sp. 2_A_57_CT2] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFI + G DVF+H SA+ + G L EGQ VT++ V+ + Sbjct: 1 MNTGKVKWFNAEKGFGFIE----SSEGQDVFVHFSAIQTEGFKTLEEGQDVTFEIVEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|288918768|ref|ZP_06413114.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] gi|288349853|gb|EFC84084.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] Length = 68 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFIT +G G DVF H S++ G +L EGQ V++ Q Sbjct: 1 MSEGTVKWFNAEKGFGFITVDG---GGPDVFAHFSSIVGDGYKSLEEGQRVSFTIEQGQ- 56 Query: 62 NGKYSAENLKLV 73 G +A+ L+ Sbjct: 57 KGPQAAQVQPLI 68 >gi|260427897|ref|ZP_05781876.1| conserved domain protein [Citreicella sp. SE45] gi|260422389|gb|EEX15640.1| conserved domain protein [Citreicella sp. SE45] Length = 68 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V+Y+ + Sbjct: 1 MPSGTVKWFNTTKGYGFIAPE---EGGKDVFVHISAVERSGLTGLADNQKVSYELKEG-R 56 Query: 62 NGKYSAENLKLV 73 +G+ A +LK + Sbjct: 57 DGRMMASDLKTL 68 >gi|300723585|ref|YP_003712890.1| cold shock protein, transcription antiterminator [Xenorhabdus nematophila ATCC 19061] gi|297630107|emb|CBJ90744.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus nematophila ATCC 19061] Length = 69 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP + DVF+H SA+ G L+EGQ V ++ Q+ G Sbjct: 5 TGTVKWFNESKGFGFITP---ADGSKDVFVHFSAIVKDGFKTLSEGQQVEFEI-QDGPKG 60 Query: 64 KYSAEN 69 +A Sbjct: 61 PAAANV 66 >gi|269139181|ref|YP_003295882.1| cold shock protein [Edwardsiella tarda EIB202] gi|267984842|gb|ACY84671.1| cold shock protein [Edwardsiella tarda EIB202] gi|304559100|gb|ADM41764.1| Cold shock protein [Edwardsiella tarda FL6-60] Length = 69 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFITP + DVF+H SA+ + G L EGQ V + Q+ Sbjct: 4 KTGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQNDGFKTLAEGQQVEFSI-QDSPR 59 Query: 63 GKYSAENLKL 72 G +A+ + L Sbjct: 60 GPAAADVVAL 69 >gi|227515455|ref|ZP_03945504.1| CspA family cold shock transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227086169|gb|EEI21481.1| CspA family cold shock transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|299783543|gb|ADJ41541.1| CspA family cold shock transcriptional regulator [Lactobacillus fermentum CECT 5716] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G+IKW+N +KGYGFI+ E GDDVF+H SA+ G L EGQ VT+D V+N Sbjct: 1 MEQGTIKWFNDEKGYGFISREA----GDDVFVHFSAIQGDGFKTLEEGQSVTFD-VENGD 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGLQAANV 63 >gi|212710131|ref|ZP_03318259.1| hypothetical protein PROVALCAL_01185 [Providencia alcalifaciens DSM 30120] gi|212687338|gb|EEB46866.1| hypothetical protein PROVALCAL_01185 [Providencia alcalifaciens DSM 30120] Length = 81 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI+P + DVF+H SA+ S L EGQ V++ V+N A G Sbjct: 17 TGLVKWFNESKGFGFISP---ADGSKDVFVHFSAIQSDSFKTLNEGQKVSFS-VENGAKG 72 Query: 64 KYSAENLKL 72 +A + L Sbjct: 73 PAAANVVAL 81 >gi|56477397|ref|YP_158986.1| cold shock transcriptional regulator [Aromatoleum aromaticum EbN1] gi|56313440|emb|CAI08085.1| probably cold shock transcription regulator protein [Aromatoleum aromaticum EbN1] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H SA+ +G +LTEGQ V YD + Sbjct: 1 MATGTVKWFNDSKGFGFITPD---NGGEDLFAHFSAIQGSGFKSLTEGQKVQYD-ETSGP 56 Query: 62 NGKYSAENLKLV 73 GK A N++ + Sbjct: 57 KGKQ-AGNIRPL 67 >gi|309701157|emb|CBJ00457.1| cold shock-like protein CspD [Escherichia coli ETEC H10407] gi|323937987|gb|EGB34249.1| cold shock domain-containing protein CspD [Escherichia coli E1520] Length = 74 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQG-P 56 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 57 KGNHASVIVPV 67 >gi|288918913|ref|ZP_06413256.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] gi|288349665|gb|EFC83899.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ +G G DVF+H SA+ G L EGQ V + Q Sbjct: 1 MAQGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIVMDGYKALEEGQRVEFQVTQGQK 57 Query: 62 NGKYSAENLKLV 73 A+ +++V Sbjct: 58 G--PQADAVRVV 67 >gi|188025849|ref|ZP_02960049.2| hypothetical protein PROSTU_01951 [Providencia stuartii ATCC 25827] gi|188020731|gb|EDU58771.1| hypothetical protein PROSTU_01951 [Providencia stuartii ATCC 25827] Length = 85 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ AG L EGQ V + +N A G Sbjct: 21 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGAGFKTLAEGQQVEFTI-ENGAKG 76 Query: 64 KYSAENLKL 72 +A + Sbjct: 77 PAAANVTAI 85 >gi|262273606|ref|ZP_06051420.1| cold shock protein CspA [Grimontia hollisae CIP 101886] gi|262273607|ref|ZP_06051421.1| cold shock protein CspD [Grimontia hollisae CIP 101886] gi|262222584|gb|EEY73895.1| cold shock protein CspA [Grimontia hollisae CIP 101886] gi|262222585|gb|EEY73896.1| cold shock protein CspD [Grimontia hollisae CIP 101886] Length = 70 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V++D Q G Sbjct: 6 TGLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASDGFKTLAEGQKVSFDVEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PQAANVVAL 70 >gi|212639235|ref|YP_002315755.1| cold shock protein, CspA family [Anoxybacillus flavithermus WK1] gi|212560715|gb|ACJ33770.1| Cold shock protein, CspA family [Anoxybacillus flavithermus WK1] Length = 81 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFI T+ G DVF+H +A+ G L EG+ VT+D V N Sbjct: 16 MNTGKVKWFNAEKGFGFIE----TDGGTDVFVHFTAIQGTGFKTLEEGEKVTFDIV-NGN 70 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 71 RGPQAANVQK 80 >gi|134094972|ref|YP_001100047.1| RNA chaperone [Herminiimonas arsenicoxydans] gi|152983242|ref|YP_001353208.1| cold shock transcription regulator protein [Janthinobacterium sp. Marseille] gi|329903345|ref|ZP_08273438.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480] gi|133738875|emb|CAL61922.1| Cold shock-like protein cspE (CSP-E) [Herminiimonas arsenicoxydans] gi|151283319|gb|ABR91729.1| cold shock transcription regulator protein [Janthinobacterium sp. Marseille] gi|327548423|gb|EGF33101.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ E G+D+F H SA+ S+G +L E Q V+++ Sbjct: 1 MATGIVKWFNDSKGFGFITPD---EGGEDLFAHFSAIQSSGFKSLQENQRVSFEVT-AGP 56 Query: 62 NGKYSAENLKLV 73 GK A N++ + Sbjct: 57 KGKQ-ASNIQPI 67 >gi|17547185|ref|NP_520587.1| cold shock-like transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17429487|emb|CAD16173.1| probable cold shock-like cspd transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V +D Q Sbjct: 1 MANGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQATNIQ 65 >gi|329850898|ref|ZP_08265743.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] gi|328841213|gb|EGF90784.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G DVF+H +AV AGL L +GQ +TY+ Sbjct: 1 MATGTVKWFNSTKGFGFIQPDA---GGSDVFVHITAVERAGLRGLNDGQKITYELATE-- 55 Query: 62 NGKYSAENLK 71 GK SA NL+ Sbjct: 56 KGKTSAVNLQ 65 >gi|319939553|ref|ZP_08013913.1| cold shock protein [Streptococcus anginosus 1_2_62CV] gi|319811539|gb|EFW07834.1| cold shock protein [Streptococcus anginosus 1_2_62CV] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ E +G DVF H SA+ S G +L EG+ VT+D + Sbjct: 1 MAQGTVKWFNAEKGFGFISQE----NGPDVFAHFSAIQSDGFKSLNEGEKVTFDIEEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--LQAINITKL 66 >gi|313671996|ref|YP_004050107.1| cold-shock DNA-binding domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312938752|gb|ADR17944.1| cold-shock DNA-binding domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M + G++KW+N KGYGFIT + +G+DVF+H SA+ G +L EG V +D V+ Sbjct: 1 MSNTGTVKWFNDTKGYGFIT----STTGEDVFVHYSAITMGGFKSLKEGDRVKFDIVKG- 55 Query: 61 ANGKYSAEN 69 G +A Sbjct: 56 PKGPQAANV 64 >gi|284007335|emb|CBA72699.1| cold shock protein CspE [Arsenophonus nasoniae] Length = 88 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITPEG G DVF+H +A+ G LT GQ V +D + Sbjct: 24 TGTVKWFNETKGFGFITPEG---GGKDVFVHYTAIDVNGFKTLTVGQKVEFDIQEGSKG- 79 Query: 64 KYSAENLKLV 73 +A N+ ++ Sbjct: 80 -SAANNVTII 88 >gi|145299398|ref|YP_001142239.1| cold shock domain-containing protein CspD [Aeromonas salmonicida subsp. salmonicida A449] gi|330829988|ref|YP_004392940.1| Cold shock-like protein cspD [Aeromonas veronii B565] gi|142852170|gb|ABO90491.1| cold shock domain protein CspD [Aeromonas salmonicida subsp. salmonicida A449] gi|328805124|gb|AEB50323.1| Cold shock-like protein cspD [Aeromonas veronii B565] Length = 72 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V ++ Q Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMEGYKTLKAGQAVNFELQQG-P 56 Query: 62 NGKYSAENLKLVPKSSN 78 G +++ +VP + Sbjct: 57 KGNHASV---IVPNEAQ 70 >gi|56698445|ref|YP_168819.1| cold shock protein CspA [Ruegeria pomeroyi DSS-3] gi|56680182|gb|AAV96848.1| cold shock protein CspA [Ruegeria pomeroyi DSS-3] Length = 68 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE + DVF+H SA+ +G+ L +GQ VT+D ++ Sbjct: 1 MANGTVKWFNSQKGFGFIAPE---QGSKDVFVHISALERSGIQKLDDGQAVTFDI-ESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESAINLAL 67 >gi|69244300|ref|ZP_00602768.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] gi|227551568|ref|ZP_03981617.1| cold-shock protein [Enterococcus faecium TX1330] gi|257878362|ref|ZP_05658015.1| cold-shock protein [Enterococcus faecium 1,230,933] gi|257887333|ref|ZP_05666986.1| cold-shock protein [Enterococcus faecium 1,141,733] gi|257889438|ref|ZP_05669091.1| cold-shock protein [Enterococcus faecium 1,231,410] gi|257892619|ref|ZP_05672272.1| cold-shock protein [Enterococcus faecium 1,231,408] gi|257895824|ref|ZP_05675477.1| cold-shock protein [Enterococcus faecium Com12] gi|257898451|ref|ZP_05678104.1| cold-shock protein [Enterococcus faecium Com15] gi|258616116|ref|ZP_05713886.1| cold shock protein CspA family protein [Enterococcus faecium DO] gi|260559947|ref|ZP_05832126.1| cold-shock protein [Enterococcus faecium C68] gi|293377552|ref|ZP_06623744.1| cold-shock DNA-binding domain protein [Enterococcus faecium PC4.1] gi|293553922|ref|ZP_06674527.1| cold-shock protein [Enterococcus faecium E1039] gi|293560530|ref|ZP_06677020.1| cold-shock protein [Enterococcus faecium E1162] gi|293568855|ref|ZP_06680168.1| cold-shock protein [Enterococcus faecium E1071] gi|293572948|ref|ZP_06683895.1| cold-shock protein [Enterococcus faecium E980] gi|294615473|ref|ZP_06695341.1| cold-shock protein [Enterococcus faecium E1636] gi|294618750|ref|ZP_06698279.1| cold shock protein [Enterococcus faecium E1679] gi|294621893|ref|ZP_06701048.1| cold shock protein [Enterococcus faecium U0317] gi|314940515|ref|ZP_07847657.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|314943280|ref|ZP_07850062.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|314948444|ref|ZP_07851829.1| major cold shock protein CspA [Enterococcus faecium TX0082] gi|314952991|ref|ZP_07855953.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|314994198|ref|ZP_07859503.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|314997118|ref|ZP_07862106.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|68196486|gb|EAN10913.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] gi|227179245|gb|EEI60217.1| cold-shock protein [Enterococcus faecium TX1330] gi|257812590|gb|EEV41348.1| cold-shock protein [Enterococcus faecium 1,230,933] gi|257823387|gb|EEV50319.1| cold-shock protein [Enterococcus faecium 1,141,733] gi|257825798|gb|EEV52424.1| cold-shock protein [Enterococcus faecium 1,231,410] gi|257828998|gb|EEV55605.1| cold-shock protein [Enterococcus faecium 1,231,408] gi|257832389|gb|EEV58810.1| cold-shock protein [Enterococcus faecium Com12] gi|257836363|gb|EEV61437.1| cold-shock protein [Enterococcus faecium Com15] gi|260074171|gb|EEW62494.1| cold-shock protein [Enterococcus faecium C68] gi|291588288|gb|EFF20123.1| cold-shock protein [Enterococcus faecium E1071] gi|291591676|gb|EFF23317.1| cold-shock protein [Enterococcus faecium E1636] gi|291595003|gb|EFF26351.1| cold shock protein [Enterococcus faecium E1679] gi|291598552|gb|EFF29614.1| cold shock protein [Enterococcus faecium U0317] gi|291601910|gb|EFF32157.1| cold-shock protein [Enterococcus faecium E1039] gi|291605497|gb|EFF34941.1| cold-shock protein [Enterococcus faecium E1162] gi|291606989|gb|EFF36364.1| cold-shock protein [Enterococcus faecium E980] gi|292643809|gb|EFF61927.1| cold-shock DNA-binding domain protein [Enterococcus faecium PC4.1] gi|313588788|gb|EFR67633.1| major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|313591379|gb|EFR70224.1| major cold shock protein CspA [Enterococcus faecium TX0133B] gi|313594927|gb|EFR73772.1| major cold shock protein CspA [Enterococcus faecium TX0133A] gi|313598008|gb|EFR76853.1| major cold shock protein CspA [Enterococcus faecium TX0133C] gi|313640286|gb|EFS04867.1| major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|313645102|gb|EFS09682.1| major cold shock protein CspA [Enterococcus faecium TX0082] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ V+YD V++ Sbjct: 1 MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQGDGFKTLEEGQAVSYD-VEDGQ 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGPQATNIVK 65 >gi|329117514|ref|ZP_08246231.1| major cold shock protein CspA [Streptococcus parauberis NCFD 2020] gi|326907919|gb|EGE54833.1| major cold shock protein CspA [Streptococcus parauberis NCFD 2020] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFIT E +G DVF H S + S G +L EGQ V +D + Sbjct: 1 MAQGTVKWFNAEKGFGFITQE----NGSDVFAHFSEIQSDGYKSLDEGQKVEFDVT-DGQ 55 Query: 62 NGKYSAENLKL 72 G ++ KL Sbjct: 56 RGPQASNITKL 66 >gi|315498412|ref|YP_004087216.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] gi|315416424|gb|ADU13065.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P E G+DVF+H +AV AGL L +GQ ++Y+ Sbjct: 1 MAEGTVKWFNATKGFGFIQP---AEGGNDVFVHITAVQRAGLQGLADGQKLSYELQTE-- 55 Query: 62 NGKYSAENLKLV 73 GK +A NL+L+ Sbjct: 56 RGKTAAVNLQLL 67 >gi|89073826|ref|ZP_01160333.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|90581460|ref|ZP_01237254.1| putative Cold shock-like protein [Vibrio angustum S14] gi|89050361|gb|EAR55862.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|90437321|gb|EAS62518.1| putative Cold shock-like protein [Vibrio angustum S14] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 1 MSTGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ- 56 Query: 62 NGKYSAENLKL 72 G +A + L Sbjct: 57 KGLQAANVVAL 67 >gi|295096413|emb|CBK85503.1| cold-shock DNA-binding protein family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 73 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|227549696|ref|ZP_03979745.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078192|gb|EEI16155.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+ + DVF+H S + G L E Q V ++ Sbjct: 1 MATGTVKWFNAEKGFGFIAPD---DGSADVFVHYSEIQGNGFRTLEENQQVEFEIGDGAK 57 Query: 62 NGKYSAE 68 + A Sbjct: 58 GPQAQAV 64 >gi|172057694|ref|YP_001814154.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|172057696|ref|YP_001814156.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990215|gb|ACB61137.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum 255-15] gi|171990217|gb|ACB61139.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum 255-15] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI E SGDDVF+H SA+ + G +L EGQ V+++ V+ Sbjct: 1 MEQGKVKWFNAEKGFGFIERE----SGDDVFVHFSAIQTDGFKSLDEGQEVSFE-VEEGQ 55 Query: 62 NGKYSAENLKL 72 G + KL Sbjct: 56 RGPQATNVTKL 66 >gi|326384649|ref|ZP_08206327.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] gi|326196616|gb|EGD53812.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+ G+DVF+H SA+A +G NL E Q V +D Q Sbjct: 1 MTQGTVKWFNGEKGFGFIAPD---NGGEDVFVHFSAIAGSGFRNLEEAQRVEFDLEQGAK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--PQATNVTAI 67 >gi|261339213|ref|ZP_05967071.1| hypothetical protein ENTCAN_05441 [Enterobacter cancerogenus ATCC 35316] gi|288319062|gb|EFC58000.1| cold shock domain protein CspD [Enterobacter cancerogenus ATCC 35316] Length = 73 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|126650270|ref|ZP_01722498.1| cold shock protein [Bacillus sp. B14905] gi|126592920|gb|EAZ86902.1| cold shock protein [Bacillus sp. B14905] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G+DVF+H SA+ + G L EGQ V + + + Sbjct: 1 MTQGTVKWFNAEKGFGFIAVE----GGNDVFVHFSAIQTDGFKTLEEGQKVEFGVEEGN- 55 Query: 62 NGKYSAENLKL 72 G + +K+ Sbjct: 56 RGPQATNVVKI 66 >gi|313906442|ref|ZP_07839778.1| cold-shock DNA-binding domain protein [Eubacterium cellulosolvens 6] gi|313468709|gb|EFR64075.1| cold-shock DNA-binding domain protein [Eubacterium cellulosolvens 6] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N DKGYGFIT E G DVF+H SA+ G +L EGQ V+Y+ V+ A Sbjct: 1 MNKGTVKWFNADKGYGFIT----GEDGKDVFVHFSAIQGEGFKSLDEGQSVSYELVEG-A 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 KGMQAANV 63 >gi|13476765|ref|NP_108334.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|319784316|ref|YP_004143792.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14027526|dbj|BAB53795.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|317170204|gb|ADV13742.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 69 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + DVF+H SAV AG+ ++ EGQ + Y+ V+++ Sbjct: 1 MSTGTVKWFNATKGFGFIQPD---DGSADVFVHISAVERAGMRDIVEGQKLGYEMVRDNK 57 Query: 62 NGKYSAENLK 71 +GK SA+ LK Sbjct: 58 SGKMSADQLK 67 >gi|296446943|ref|ZP_06888878.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] gi|296255510|gb|EFH02602.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] Length = 70 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N KG+GFI P G DVF+H +AV AGL L EGQ ++Y+ V + Sbjct: 1 MNTGVVKWFNAHKGFGFIQP---AAGGADVFVHITAVERAGLRGLAEGQKISYEIVVDSR 57 Query: 62 NGKYSAENLKL 72 +GK SA+ +++ Sbjct: 58 SGKSSADRIEV 68 >gi|302544963|ref|ZP_07297305.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302462581|gb|EFL25674.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653] Length = 68 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI EG G DVF+H S++ G +L + Q V + VQ Sbjct: 1 MAQGTVKWFNAEKGYGFIAQEG---GGPDVFVHYSSINGNGYRSLADDQRVEFQIVQGRK 57 Query: 62 NGKYSAENLKLV 73 AE ++++ Sbjct: 58 G--PQAEEVRVL 67 >gi|302877658|ref|YP_003846222.1| cold-shock DNA-binding domain-containing protein [Gallionella capsiferriformans ES-2] gi|302580447|gb|ADL54458.1| cold-shock DNA-binding domain protein [Gallionella capsiferriformans ES-2] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+TP+ + +D+F H SA+ G L EGQ V+++ Q Sbjct: 1 MATGTVKWFNDAKGFGFVTPD---DGSEDLFAHFSAINMNGFKTLQEGQKVSFEVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|56477977|ref|YP_159566.1| putative cold-shock protein [Aromatoleum aromaticum EbN1] gi|56314020|emb|CAI08665.1| putative cold-shock protein [Aromatoleum aromaticum EbN1] Length = 67 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + +D+F H SA+ G L EG+ V+++ Q Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGSEDLFAHFSAINMNGFKTLKEGEKVSFEVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|307544234|ref|YP_003896713.1| cold shock protein CspA [Halomonas elongata DSM 2581] gi|307216258|emb|CBV41528.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas elongata DSM 2581] Length = 68 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P + GDDVF H S + + G +L EGQ V++D Q Sbjct: 1 MTTGTVKWFNDSKGFGFISP---ADGGDDVFAHFSEIQAEGFKSLQEGQSVSFDVTQGKK 57 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 58 G--LQASNIKAL 67 >gi|294678414|ref|YP_003579029.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003] gi|294477234|gb|ADE86622.1| cold shock protein CspA-3 [Rhodobacter capsulatus SB 1003] Length = 68 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE T DVF+H +A+ AGL L +GQ V++D + D Sbjct: 1 MANGTVKWFNAIKGFGFIAPESGT---KDVFVHVTALERAGLRGLNDGQAVSFDL-ERDR 56 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 57 NGRESATNLVL 67 >gi|197106500|ref|YP_002131877.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] gi|196479920|gb|ACG79448.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] Length = 69 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP KG+GFI P+ G DVF+H SAV + L +L+EGQ V ++ ++ Sbjct: 1 MTIGTVKWFNPAKGFGFIQPD---NGGPDVFVHISAVERSTLGSLSEGQKVGFELERDQR 57 Query: 62 NGKYSAENLK 71 +GK SA L+ Sbjct: 58 SGKTSAGQLQ 67 >gi|188586205|ref|YP_001917750.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350892|gb|ACB85162.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 66 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N DKGYGFI EG DDVF+H SA+ G L EGQ V ++ V+ Sbjct: 1 MTKGIVKWFNSDKGYGFIQVEGE----DDVFVHFSAIQEEGFKTLDEGQQVEFNVVEGQ- 55 Query: 62 NGKYSAENLKL 72 G +AE +KL Sbjct: 56 RGPQAAEVVKL 66 >gi|90409803|ref|ZP_01217820.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|90329156|gb|EAS45413.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] Length = 70 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFIT + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 6 TGLVKWFNEDKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PQAANVVAL 70 >gi|325529192|gb|EGD06159.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. TJI49] Length = 67 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S + G L EGQ V+Y+ + Sbjct: 1 MDTGTVKWFNDTKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYETKRGPK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--LQASNITPL 67 >gi|292487806|ref|YP_003530681.1| cold shock-like protein CspD [Erwinia amylovora CFBP1430] gi|292899035|ref|YP_003538404.1| cold shock-like protein [Erwinia amylovora ATCC 49946] gi|291198883|emb|CBJ45993.1| cold shock-like protein [Erwinia amylovora ATCC 49946] gi|291553228|emb|CBA20273.1| Cold shock-like protein cspD (CPS-D) [Erwinia amylovora CFBP1430] gi|312171924|emb|CBX80181.1| Cold shock-like protein cspD (CPS-D) [Erwinia amylovora ATCC BAA-2158] Length = 75 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D Q Sbjct: 1 MMTGTVKWFNNAKGFGFICPAG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|289523010|ref|ZP_06439864.1| putative cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503553|gb|EFD24717.1| putative cold shock protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 65 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFIT +E G DVF+H SA+ G L EG V ++ V+ A G Sbjct: 3 GTVKWFNATKGYGFIT----SEDGKDVFVHYSAIDMKGFKTLEEGDKVEFEVVEG-AKGP 57 Query: 65 YSAENLKL 72 +A ++ Sbjct: 58 QAAHVKRV 65 >gi|187477996|ref|YP_786020.1| cold shock-like protein [Bordetella avium 197N] gi|115422582|emb|CAJ49107.1| cold shock-like protein [Bordetella avium 197N] Length = 68 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI P+ + G D+F H S + S G +L E Q V+++ + Sbjct: 1 MATGIVKWFNAEKGYGFILPD---DGGKDLFAHYSEIRSEGYKSLQENQRVSFEIGEGPK 57 Query: 62 NGKYSAENLKLV 73 SA+++K++ Sbjct: 58 G--PSAKDIKVI 67 >gi|258541245|ref|YP_003186678.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-01] gi|329114852|ref|ZP_08243608.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001] gi|256632323|dbj|BAH98298.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-01] gi|256635380|dbj|BAI01349.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-03] gi|256638435|dbj|BAI04397.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-07] gi|256641489|dbj|BAI07444.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-22] gi|256644544|dbj|BAI10492.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-26] gi|256647599|dbj|BAI13540.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-32] gi|256650652|dbj|BAI16586.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653643|dbj|BAI19570.1| transcriptional regulator cold shock protein DNA-binding protein [Acetobacter pasteurianus IFO 3283-12] gi|326695749|gb|EGE47434.1| Putative cold shock protein Y4cH [Acetobacter pomorum DM001] Length = 68 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP KG+GFI P+ G D F+H S + AG+ LTEGQ V+Y+ + Sbjct: 1 MATGTVKWFNPTKGFGFIQPD---NGGQDAFVHISELERAGMHTLTEGQQVSYEL-EAGR 56 Query: 62 NGKYSAENLKLV 73 NGK SA ++K + Sbjct: 57 NGKTSAVSIKAI 68 >gi|218900031|ref|YP_002448442.1| cold shock protein CspD [Bacillus cereus G9842] gi|228903378|ref|ZP_04067509.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|228910715|ref|ZP_04074526.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|228942044|ref|ZP_04104587.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228967983|ref|ZP_04128992.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228974975|ref|ZP_04135536.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981568|ref|ZP_04141865.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|229020116|ref|ZP_04176895.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|229026344|ref|ZP_04182702.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|229175579|ref|ZP_04303089.1| Cold shock protein cspB [Bacillus cereus MM3] gi|218540595|gb|ACK92989.1| cold shock protein CspD [Bacillus cereus G9842] gi|228607975|gb|EEK65287.1| Cold shock protein cspB [Bacillus cereus MM3] gi|228734944|gb|EEL85581.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|228741182|gb|EEL91401.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|228778247|gb|EEM26517.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|228784828|gb|EEM32846.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791707|gb|EEM39300.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228817713|gb|EEM63795.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228848983|gb|EEM93826.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|228856339|gb|EEN00868.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|326942646|gb|AEA18542.1| cold shock protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 66 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 MQTGKVKWFNGEKGFGFIEVE----GGEDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|123441858|ref|YP_001005841.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332162200|ref|YP_004298777.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122088819|emb|CAL11625.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606256|emb|CBY27754.1| cold shock proteins [Yersinia enterocolitica subsp. palearctica Y11] gi|325666430|gb|ADZ43074.1| putative cold shock protein CspE2 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862901|emb|CBX73038.1| cold shock-like protein cspE [Yersinia enterocolitica W22703] Length = 69 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y Q+ Sbjct: 4 KTGQVKWFNEAKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPR 59 Query: 63 GKYSAENLKL 72 G +A + L Sbjct: 60 GPAAANVVAL 69 >gi|257867741|ref|ZP_05647394.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC30] gi|257869629|ref|ZP_05649282.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2] gi|257874069|ref|ZP_05653722.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC10] gi|257876646|ref|ZP_05656299.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC20] gi|325571055|ref|ZP_08146627.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] gi|257801824|gb|EEV30727.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC30] gi|257803793|gb|EEV32615.1| cold-shock domain-contain protein [Enterococcus gallinarum EG2] gi|257808233|gb|EEV37055.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC10] gi|257810812|gb|EEV39632.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC20] gi|325156140|gb|EGC68326.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] Length = 66 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT E+G+DVF+H SA+ G L EGQ VT+D ++ Sbjct: 1 METGTVKWFNSDKGFGFIT----AENGNDVFVHFSAIQGEGFKTLEEGQAVTFDI-EDGQ 55 Query: 62 NGKYSAEN 69 G + Sbjct: 56 RGPQATNV 63 >gi|221369644|ref|YP_002520740.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131] gi|221162696|gb|ACM03667.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131] Length = 77 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G DVF+H +A+ AG+ L +GQ V++D + D Sbjct: 10 MANGTVKWFNATKGFGFIAPAG---GSKDVFVHVTALERAGIRQLDDGQAVSFDL-ERDR 65 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 66 NGRESATNLVL 76 >gi|209520011|ref|ZP_03268789.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295676690|ref|YP_003605214.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|209499550|gb|EDZ99627.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295436533|gb|ADG15703.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] Length = 67 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H S + + G +L E Q V+++ Q Sbjct: 1 MPTGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRTEGFKSLQENQKVSFEIKQG-P 56 Query: 62 NGKYSAE 68 GK +A+ Sbjct: 57 KGKQAAD 63 >gi|73918922|sp|Q5X9L4|CSPA_STRP6 RecName: Full=Major cold shock protein Length = 67 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI STE+G DVF H SA+ ++G L EGQ V +D + Sbjct: 1 MAQGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTSGFKTLEEGQKVAFDVEEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--PQAVNITKL 66 >gi|170769983|ref|ZP_02904436.1| cold shock DNA-binding protein [Escherichia albertii TW07627] gi|170121167|gb|EDS90098.1| cold shock DNA-binding protein [Escherichia albertii TW07627] Length = 70 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P ++ G DVF+H +A+ S L E Q V + Q G Sbjct: 6 TGLVKWFNADKGFGFISP---SDGGKDVFVHFTAIQSNEFRTLNENQKVEFSIEQG-PRG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVVTL 70 >gi|153006879|ref|YP_001381204.1| cold-shock DNA-binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152030452|gb|ABS28220.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 67 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT + G+DVF H +A+ + G L EGQ V +D + Sbjct: 1 MSTGTVKWFNDAKGFGFITQDS---GGEDVFCHHTAINAQGFRTLAEGQKVEFDVTKGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--LQAANVRPL 67 >gi|77465631|ref|YP_355134.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1] gi|77390049|gb|ABA81233.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1] Length = 77 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G DVF+H +A+ AG+ L +GQ V++D + D Sbjct: 10 MANGTVKWFNATKGFGFIAPTG---GSKDVFVHVTALERAGIRQLDDGQAVSFDL-ERDR 65 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 66 NGRESATNLVL 76 >gi|238749763|ref|ZP_04611268.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380] gi|238712418|gb|EEQ04631.1| Cold shock-like protein cspE [Yersinia rohdei ATCC 43380] Length = 69 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y Q+ Sbjct: 4 KTGQVKWFNEAKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPR 59 Query: 63 GKYSAENLKL 72 G +A + L Sbjct: 60 GPAAANVIAL 69 >gi|294636954|ref|ZP_06715278.1| cold shock domain protein CspD [Edwardsiella tarda ATCC 23685] gi|291089847|gb|EFE22408.1| cold shock domain protein CspD [Edwardsiella tarda ATCC 23685] Length = 73 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G GDD+F H +++ G L GQ V ++ Sbjct: 1 METGTVKWFNNAKGFGFICPAG---GGDDIFAHYTSIQMEGYRTLKAGQRVQFELHIGPK 57 Query: 62 NGKYSAENLKLVPKS 76 A+ + +P Sbjct: 58 G--NHADTIIPLPNE 70 >gi|227499116|ref|ZP_03929251.1| cold-shock DNA-binding protein [Acidaminococcus sp. D21] gi|284047580|ref|YP_003397919.1| cold-shock DNA-binding domain protein [Acidaminococcus fermentans DSM 20731] gi|226904563|gb|EEH90481.1| cold-shock DNA-binding protein [Acidaminococcus sp. D21] gi|283951801|gb|ADB46604.1| cold-shock DNA-binding domain protein [Acidaminococcus fermentans DSM 20731] Length = 65 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V +D V+ + G Sbjct: 2 TGKVKWFNAEKGYGFIERE----DGGDVFVHFSAIQGEGFKTLEEGQAVEFDVVEGN-RG 56 Query: 64 KYSAENLKL 72 + +A +KL Sbjct: 57 EQAANVVKL 65 >gi|157374396|ref|YP_001472996.1| putative cold shock-like protein [Shewanella sediminis HAW-EB3] gi|157316770|gb|ABV35868.1| putative Cold shock-like protein [Shewanella sediminis HAW-EB3] Length = 70 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI+ E GDDVF+H A+AS G L EGQ V+++ Q G Sbjct: 6 TGTVKWFNEEKGFGFISQE---NGGDDVFVHFRAIASDGFKTLAEGQKVSFEVEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + + Sbjct: 62 LQAANVVAI 70 >gi|308071085|ref|YP_003872690.1| Cold shock-like protein cspC [Paenibacillus polymyxa E681] gi|305860364|gb|ADM72152.1| Cold shock-like protein cspC [Paenibacillus polymyxa E681] Length = 65 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI T G DVF+H SA+ + G L EGQ V +D V+ A G Sbjct: 2 QGKVKWFNAEKGYGFIE----TSDGGDVFVHFSAIQTEGFKTLEEGQDVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A KL Sbjct: 57 PQAANVTKL 65 >gi|226322941|ref|ZP_03798459.1| hypothetical protein COPCOM_00713 [Coprococcus comes ATCC 27758] gi|225208727|gb|EEG91081.1| hypothetical protein COPCOM_00713 [Coprococcus comes ATCC 27758] Length = 67 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGFIT E + G+DVF+H S +A G +L EGQ VT+D + + Sbjct: 1 MNKGTVKWFNAQKGYGFITNEST---GEDVFVHFSGIAGEGYKSLEEGQNVTFDITEGNR 57 Query: 62 NGKYSAENLKL 72 A N+ + Sbjct: 58 G--LQAVNVTV 66 >gi|146283150|ref|YP_001173303.1| cold-shock DNA-binding protein [Pseudomonas stutzeri A1501] gi|145571355|gb|ABP80461.1| cold-shock DNA-binding protein [Pseudomonas stutzeri A1501] Length = 243 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI+ + SGDDVF+H A+ G L EGQ V + + D Sbjct: 174 REAGTVKWFNTSKGFGFISRD----SGDDVFVHFRAIRGEGHRILVEGQRVEFTIMMRDK 229 Query: 62 NGKYSAENLKLVP 74 AE++ V Sbjct: 230 G--LQAEDVVPVE 240 >gi|84514336|ref|ZP_01001700.1| cold shock protein CspA [Loktanella vestfoldensis SKA53] gi|84511387|gb|EAQ07840.1| cold shock protein CspA [Loktanella vestfoldensis SKA53] Length = 68 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG DVF+H SAV +GL L + Q VT+D ++ Sbjct: 1 MANGTVKWFNATKGFGFIAPEG---GSKDVFVHISAVERSGLTGLKDDQKVTFDI-ESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESAINLAL 67 >gi|119384797|ref|YP_915853.1| cold-shock DNA-binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119374564|gb|ABL70157.1| cold-shock DNA-binding protein family [Paracoccus denitrificans PD1222] Length = 68 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE D+F+H SAV AG+ L +GQ V++D + D Sbjct: 1 MANGTVKWFNSAKGFGFIQPES---GSKDIFVHISAVERAGIHQLNDGQAVSFDL-ERDR 56 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 57 NGRDSATNLVL 67 >gi|254438790|ref|ZP_05052284.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter antarcticus 307] gi|198254236|gb|EDY78550.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter antarcticus 307] Length = 68 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G DVF+H SAV +GL L + Q VT+D V+ Sbjct: 1 MANGTVKWFNTTKGFGFIAPET---GGKDVFVHISAVERSGLTGLADDQKVTFD-VEAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESAVNLAL 67 >gi|146280255|ref|YP_001170411.1| hypothetical protein Rsph17025_4258 [Rhodobacter sphaeroides ATCC 17025] gi|145558496|gb|ABP73106.1| hypothetical protein Rsph17025_4258 [Rhodobacter sphaeroides ATCC 17025] Length = 68 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G DVF+H +A+ AG+ L +GQ VT+D + D Sbjct: 1 MANGTVKWFNATKGFGFIAPTG---GSKDVFVHVTALERAGIRQLNDGQTVTFDL-ERDR 56 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 57 NGRESATNLVL 67 >gi|320540138|ref|ZP_08039793.1| putative cold-shock DNA-binding domain-containing protein [Serratia symbiotica str. Tucson] gi|320029804|gb|EFW11828.1| putative cold-shock DNA-binding domain-containing protein [Serratia symbiotica str. Tucson] Length = 69 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITPE + DVF+H SA+AS G L EGQ V ++ N A G Sbjct: 5 KGSVKWFNESKGFGFITPE---DGSKDVFVHFSAIASNGFKTLAEGQHVEFEIT-NGAKG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PSAANVIAI 69 >gi|310644316|ref|YP_003949075.1| cold shock-like protein cspc [Paenibacillus polymyxa SC2] gi|309249267|gb|ADO58834.1| Cold shock-like protein cspC [Paenibacillus polymyxa SC2] Length = 65 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI T G DVF+H SA+ + G L EGQ V +D V+ A G Sbjct: 2 QGKVKWFNAEKGYGFIE----TADGGDVFVHFSAIQTEGFKTLEEGQDVEFDIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A KL Sbjct: 57 PQAANVTKL 65 >gi|304311205|ref|YP_003810803.1| Cold-shock protein CspD [gamma proteobacterium HdN1] gi|301796938|emb|CBL45151.1| Cold-shock protein CspD [gamma proteobacterium HdN1] Length = 97 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 5/77 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI P+G GDD+F+H S + G +L GQ+VTY+ + Sbjct: 1 MATGKVKWFNNAKGYGFIRPDGE---GDDLFVHYSYIHMDGYKSLKAGQVVTYEIREAPK 57 Query: 62 NGKYSAENLKLVPKSSN 78 A N+ LV + + Sbjct: 58 G--LHAVNIGLVEHAHD 72 >gi|184201878|ref|YP_001856085.1| cold shock protein [Kocuria rhizophila DC2201] gi|183582108|dbj|BAG30579.1| cold shock protein [Kocuria rhizophila DC2201] Length = 68 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFI PE + DDVF H S + S G +L EG V ++ Q D Sbjct: 1 MTTGTVKWFNADKGFGFIAPE---DGSDDVFAHFSGINSGGFRSLNEGDKVEFEVQQGDR 57 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 58 G--LQATNISVI 67 >gi|225850576|ref|YP_002730810.1| hypothetical protein PERMA_1024 [Persephonella marina EX-H1] gi|225644787|gb|ACO02973.1| conserved domain protein [Persephonella marina EX-H1] Length = 68 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KGYGFIT + + DVF+H SA+A G L EGQ V +D VQ D Sbjct: 1 MRLTGTVKWFNSKKGYGFITRD---DGQGDVFVHFSAIAENGFKTLEEGQKVEFDVVQED 57 Query: 61 ANGKYSAENLKL 72 G+ + +K+ Sbjct: 58 -KGQKAQNVVKI 68 >gi|29377389|ref|NP_816543.1| cold-shock domain-contain protein [Enterococcus faecalis V583] gi|227518209|ref|ZP_03948258.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis TX0104] gi|227554372|ref|ZP_03984419.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis HH22] gi|229547598|ref|ZP_04436323.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis TX1322] gi|229548194|ref|ZP_04436919.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255970846|ref|ZP_05421432.1| cold-shock protein [Enterococcus faecalis T1] gi|255974421|ref|ZP_05425007.1| cold-shock domain-containing protein [Enterococcus faecalis T2] gi|256618291|ref|ZP_05475137.1| cold-shock DNA-binding protein [Enterococcus faecalis ATCC 4200] gi|256761221|ref|ZP_05501801.1| cold-shock DNA-binding protein family [Enterococcus faecalis T3] gi|256852484|ref|ZP_05557860.1| cold-shock domain-contain protein [Enterococcus faecalis T8] gi|256958160|ref|ZP_05562331.1| cold-shock DNA-binding protein [Enterococcus faecalis DS5] gi|256960306|ref|ZP_05564477.1| cold-shock DNA-binding protein [Enterococcus faecalis Merz96] gi|256962742|ref|ZP_05566913.1| cold-shock DNA-binding protein [Enterococcus faecalis HIP11704] gi|257077433|ref|ZP_05571794.1| cold-shock DNA-binding protein [Enterococcus faecalis JH1] gi|257080702|ref|ZP_05575063.1| cold-shock DNA-binding family protein [Enterococcus faecalis E1Sol] gi|257083376|ref|ZP_05577737.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1] gi|257088066|ref|ZP_05582427.1| cold-shock DNA-binding protein family [Enterococcus faecalis D6] gi|257091145|ref|ZP_05585506.1| cold-shock DNA-binding protein [Enterococcus faecalis CH188] gi|257417092|ref|ZP_05594086.1| cold-shock DNA-binding protein [Enterococcus faecalis AR01/DG] gi|257417806|ref|ZP_05594800.1| cold-shock protein [Enterococcus faecalis T11] gi|257420576|ref|ZP_05597566.1| cold shock protein [Enterococcus faecalis X98] gi|293382174|ref|ZP_06628117.1| conserved domain protein [Enterococcus faecalis R712] gi|293388515|ref|ZP_06633019.1| conserved domain protein [Enterococcus faecalis S613] gi|294779646|ref|ZP_06745037.1| cold-shock DNA-binding domain protein [Enterococcus faecalis PC1.1] gi|300860161|ref|ZP_07106248.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11] gi|307268850|ref|ZP_07550217.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|307272662|ref|ZP_07553910.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|307275091|ref|ZP_07556245.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|307278556|ref|ZP_07559628.1| major cold shock protein CspA [Enterococcus faecalis TX0860] gi|307287380|ref|ZP_07567439.1| major cold shock protein CspA [Enterococcus faecalis TX0109] gi|307290818|ref|ZP_07570712.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|312900401|ref|ZP_07759711.1| major cold shock protein CspA [Enterococcus faecalis TX0470] gi|312902908|ref|ZP_07762105.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|312905731|ref|ZP_07764753.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512] gi|312909074|ref|ZP_07767934.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516] gi|312952213|ref|ZP_07771091.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|29344856|gb|AAO82613.1| cold-shock domain family protein [Enterococcus faecalis V583] gi|227074365|gb|EEI12328.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis TX0104] gi|227176491|gb|EEI57463.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis HH22] gi|229306673|gb|EEN72669.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|229307288|gb|EEN73275.1| CspA family cold shock transcriptional regulator [Enterococcus faecalis TX1322] gi|255961864|gb|EET94340.1| cold-shock protein [Enterococcus faecalis T1] gi|255967293|gb|EET97915.1| cold-shock domain-containing protein [Enterococcus faecalis T2] gi|256597818|gb|EEU16994.1| cold-shock DNA-binding protein [Enterococcus faecalis ATCC 4200] gi|256682472|gb|EEU22167.1| cold-shock DNA-binding protein family [Enterococcus faecalis T3] gi|256712338|gb|EEU27370.1| cold-shock domain-contain protein [Enterococcus faecalis T8] gi|256948656|gb|EEU65288.1| cold-shock DNA-binding protein [Enterococcus faecalis DS5] gi|256950802|gb|EEU67434.1| cold-shock DNA-binding protein [Enterococcus faecalis Merz96] gi|256953238|gb|EEU69870.1| cold-shock DNA-binding protein [Enterococcus faecalis HIP11704] gi|256985463|gb|EEU72765.1| cold-shock DNA-binding protein [Enterococcus faecalis JH1] gi|256988732|gb|EEU76034.1| cold-shock DNA-binding family protein [Enterococcus faecalis E1Sol] gi|256991406|gb|EEU78708.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1] gi|256996096|gb|EEU83398.1| cold-shock DNA-binding protein family [Enterococcus faecalis D6] gi|256999957|gb|EEU86477.1| cold-shock DNA-binding protein [Enterococcus faecalis CH188] gi|257158920|gb|EEU88880.1| cold-shock DNA-binding protein [Enterococcus faecalis ARO1/DG] gi|257159634|gb|EEU89594.1| cold-shock protein [Enterococcus faecalis T11] gi|257162400|gb|EEU92360.1| cold shock protein [Enterococcus faecalis X98] gi|291080457|gb|EFE17821.1| conserved domain protein [Enterococcus faecalis R712] gi|291082119|gb|EFE19082.1| conserved domain protein [Enterococcus faecalis S613] gi|294453303|gb|EFG21714.1| cold-shock DNA-binding domain protein [Enterococcus faecalis PC1.1] gi|295114296|emb|CBL32933.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76] gi|300849200|gb|EFK76950.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11] gi|306498127|gb|EFM67650.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|306501553|gb|EFM70849.1| major cold shock protein CspA [Enterococcus faecalis TX0109] gi|306504793|gb|EFM73991.1| major cold shock protein CspA [Enterococcus faecalis TX0860] gi|306508209|gb|EFM77325.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|306510657|gb|EFM79679.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|306514854|gb|EFM83402.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|310628210|gb|EFQ11493.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512] gi|310629869|gb|EFQ13152.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|310633680|gb|EFQ16963.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|311290636|gb|EFQ69192.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516] gi|311292491|gb|EFQ71047.1| major cold shock protein CspA [Enterococcus faecalis TX0470] gi|315028141|gb|EFT40073.1| major cold shock protein CspA [Enterococcus faecalis TX2137] gi|315030878|gb|EFT42810.1| major cold shock protein CspA [Enterococcus faecalis TX4000] gi|315032295|gb|EFT44227.1| major cold shock protein CspA [Enterococcus faecalis TX0017] gi|315036226|gb|EFT48158.1| major cold shock protein CspA [Enterococcus faecalis TX0027] gi|315145411|gb|EFT89427.1| major cold shock protein CspA [Enterococcus faecalis TX2141] gi|315148797|gb|EFT92813.1| major cold shock protein CspA [Enterococcus faecalis TX4244] gi|315151664|gb|EFT95680.1| major cold shock protein CspA [Enterococcus faecalis TX0012] gi|315154536|gb|EFT98552.1| major cold shock protein CspA [Enterococcus faecalis TX0031] gi|315156405|gb|EFU00422.1| major cold shock protein CspA [Enterococcus faecalis TX0043] gi|315160103|gb|EFU04120.1| major cold shock protein CspA [Enterococcus faecalis TX0312] gi|315163277|gb|EFU07294.1| major cold shock protein CspA [Enterococcus faecalis TX0645] gi|315165918|gb|EFU09935.1| major cold shock protein CspA [Enterococcus faecalis TX1302] gi|315169325|gb|EFU13342.1| major cold shock protein CspA [Enterococcus faecalis TX1341] gi|315171820|gb|EFU15837.1| major cold shock protein CspA [Enterococcus faecalis TX1342] gi|315174742|gb|EFU18759.1| major cold shock protein CspA [Enterococcus faecalis TX1346] gi|315576277|gb|EFU88468.1| major cold shock protein CspA [Enterococcus faecalis TX0309B] gi|315578917|gb|EFU91108.1| major cold shock protein CspA [Enterococcus faecalis TX0630] gi|315582769|gb|EFU94960.1| major cold shock protein CspA [Enterococcus faecalis TX0309A] gi|323478890|gb|ADX78329.1| cold shock protein cspC [Enterococcus faecalis 62] gi|327536078|gb|AEA94912.1| cold shock protein CspA [Enterococcus faecalis OG1RF] gi|329573421|gb|EGG55031.1| major cold shock protein CspA [Enterococcus faecalis TX1467] Length = 66 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ E G DVF+H SA+ G L EGQ VT+D +D Sbjct: 1 MEQGTVKWFNAEKGFGFISRE----DGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSDR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQAVNVE 64 >gi|152975126|ref|YP_001374643.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023878|gb|ABS21648.1| putative cold-shock DNA-binding domain protein [Bacillus cytotoxicus NVH 391-98] Length = 65 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E DDVF+H +A+ G +L EGQ V++D V+ + G Sbjct: 2 QGKVKWFNNEKGFGFIE----IEGADDVFVHFTAIQGEGYKSLEEGQEVSFDIVEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|313884810|ref|ZP_07818562.1| major cold shock protein CspA [Eremococcus coleocola ACS-139-V-Col8] gi|312619501|gb|EFR30938.1| major cold shock protein CspA [Eremococcus coleocola ACS-139-V-Col8] Length = 66 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N DKG+GFI +G DDVF+H SA+ S G L EGQ V++D ++ A Sbjct: 1 MAEGKVKWFNADKGFGFIERDGE----DDVFVHFSAIQSEGFKTLEEGQAVSFDI-EDGA 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 RGPQAANVEKI 66 >gi|257865157|ref|ZP_05644810.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC30] gi|257871481|ref|ZP_05651134.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC10] gi|257874772|ref|ZP_05654425.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC20] gi|325571583|ref|ZP_08147083.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] gi|257799091|gb|EEV28143.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC30] gi|257805645|gb|EEV34467.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC10] gi|257808938|gb|EEV37758.1| cold-shock domain-contain protein [Enterococcus casseliflavus EC20] gi|325156059|gb|EGC68255.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] Length = 66 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ E G DVF+H SA+ G L EGQ VT+D +D Sbjct: 1 MEQGTVKWFNAEKGFGFISRE----DGTDVFVHFSAIQGEGFKTLEEGQAVTFDVEDSDR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--PQAVNV 63 >gi|271967211|ref|YP_003341407.1| cold-shock DNA-binding domain-containing protein [Streptosporangium roseum DSM 43021] gi|270510386|gb|ACZ88664.1| putative cold-shock DNA-binding domain protein [Streptosporangium roseum DSM 43021] Length = 67 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+ + DVF+H SA+ S G L E Q V++ Q Sbjct: 1 MSEGTVKWFNAEKGFGFIAPD---DGTADVFVHYSAINSGGYRTLEENQRVSFTTTQGQK 57 Query: 62 NGKYSAENLKLV 73 A+ ++++ Sbjct: 58 G--PQADQVQVI 67 >gi|126650361|ref|ZP_01722589.1| cold-shock domain family protein [Bacillus sp. B14905] gi|126593011|gb|EAZ86993.1| cold-shock domain family protein [Bacillus sp. B14905] Length = 67 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ VT+D + Sbjct: 1 MEKGNVKWFNGEKGFGFIERE----GGDDVFVHFSAIQGEGYKTLKEGQAVTFDVEEGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQASNVR 64 >gi|148261824|ref|YP_001235951.1| cold-shock DNA-binding domain-containing protein [Acidiphilium cryptum JF-5] gi|326405328|ref|YP_004285410.1| cold shock protein [Acidiphilium multivorum AIU301] gi|146403505|gb|ABQ32032.1| cold-shock DNA-binding protein family [Acidiphilium cryptum JF-5] gi|325052190|dbj|BAJ82528.1| cold shock protein [Acidiphilium multivorum AIU301] Length = 68 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + DVF+H SAV AGL + EGQ + ++ V+ Sbjct: 1 MSTGTVKWFNATKGYGFIQPD---DGSKDVFVHISAVERAGLGRIDEGQRLEFE-VRKGR 56 Query: 62 NGKYSAENLK 71 GK SAENLK Sbjct: 57 EGKMSAENLK 66 >gi|260102778|ref|ZP_05753015.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083418|gb|EEW67538.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 67 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT + DVF+H SA+ + G +L EGQ V+YD Q + Sbjct: 1 MQTGTVKWFNADKGFGFIT---GSSDNKDVFVHFSAIKTDGFKSLEEGQKVSYDVEQG-S 56 Query: 62 NGKYSAENL 70 G + + Sbjct: 57 RGPQATNVV 65 >gi|291279814|ref|YP_003496649.1| cold shock protein [Deferribacter desulfuricans SSM1] gi|290754516|dbj|BAI80893.1| cold shock protein [Deferribacter desulfuricans SSM1] Length = 67 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KGYGFIT + G+DVF+H +A+ G +L EG V +D V+ Sbjct: 1 MSKTGTVKWFNDSKGYGFIT----SSDGNDVFVHFTAIKMDGFKSLKEGDQVQFDIVEG- 55 Query: 61 ANGKYSAENLKL 72 G ++ +K+ Sbjct: 56 PKGPQASNVVKI 67 >gi|290475740|ref|YP_003468629.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus bovienii SS-2004] gi|289175062|emb|CBJ81865.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus bovienii SS-2004] Length = 69 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP + DVF+H SA+ + G L+EGQ V ++ QN G Sbjct: 5 TGIVKWFNESKGFGFITP---ADGSKDVFVHFSAIMNDGFKTLSEGQQVEFEI-QNGPKG 60 Query: 64 KYSAENLKL 72 +A L Sbjct: 61 PAAANVTAL 69 >gi|261346879|ref|ZP_05974523.1| conserved domain protein [Providencia rustigianii DSM 4541] gi|282565065|gb|EFB70600.1| conserved domain protein [Providencia rustigianii DSM 4541] Length = 70 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P T+ DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFNSDKGFGFISP---TDGSKDVFVHFSAIQSDNFRTLDEGQKVEFTI-ENGAKG 61 Query: 64 KYSAENLKL 72 +A + + Sbjct: 62 PAAANVVAI 70 >gi|294101499|ref|YP_003553357.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] gi|293616479|gb|ADE56633.1| cold-shock DNA-binding domain protein [Aminobacterium colombiense DSM 12261] Length = 66 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFIT E G D F+H SA+ G L EGQ V++D ++ Sbjct: 1 MTQGTVKWFNGTKGYGFIT----GEDGKDYFVHFSAIQVDGFKTLDEGQKVSFDI-ESGQ 55 Query: 62 NGKYSAENLKLV 73 G +A N+K + Sbjct: 56 KGPQAA-NVKPL 66 >gi|73538959|ref|YP_299326.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72122296|gb|AAZ64482.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 67 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFITP+ + G D+F H S + +G +L EG V +D Q Sbjct: 1 MATGIVKWFNNEKGYGFITPD---DGGKDLFAHHSEIQGSGFKSLDEGAKVEFDVTQGQK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--LQASNIRKL 67 >gi|326693593|ref|ZP_08230598.1| cold shock protein [Leuconostoc argentinum KCTC 3773] Length = 66 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGF+T E +G+DVF H SA+ G L EGQ V ++ +D Sbjct: 1 MEKGTVKWFNGEKGYGFVTRE----NGEDVFAHFSAIQGDGFKTLEEGQAVEFEVETSD- 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGLQAANIVKL 66 >gi|253574512|ref|ZP_04851853.1| cold-shock DNA-binding domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846217|gb|EES74224.1| cold-shock DNA-binding domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 66 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ VQ + Sbjct: 1 METGTVKWFNAEKGFGFIEVE----GGNDVFVHFSAITGEGFKTLDEGQRVQFNVVQGN- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQAENVVKL 66 >gi|83717433|ref|YP_439199.1| cold-shock domain-contain protein [Burkholderia thailandensis E264] gi|167577641|ref|ZP_02370515.1| cold-shock domain family protein-related protein [Burkholderia thailandensis TXDOH] gi|167615783|ref|ZP_02384418.1| cold-shock domain family protein-related protein [Burkholderia thailandensis Bt4] gi|257142321|ref|ZP_05590583.1| cold-shock domain-contain protein [Burkholderia thailandensis E264] gi|83651258|gb|ABC35322.1| cold-shock domain family protein-related protein [Burkholderia thailandensis E264] Length = 67 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ GDD+F H S + S G L + Q V+++ + Sbjct: 1 METGTVKWFNETKGFGFITPDS---GGDDLFAHFSEIRSEGYKTLADNQKVSFE-TKRGP 56 Query: 62 NGKYSAENLKLV 73 G +A N+K + Sbjct: 57 KGLQAA-NIKPL 67 >gi|163794103|ref|ZP_02188076.1| Cold-shock DNA-binding domain protein [alpha proteobacterium BAL199] gi|159180717|gb|EDP65236.1| Cold-shock DNA-binding domain protein [alpha proteobacterium BAL199] Length = 68 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G DVF+H +AV +GL L EGQ + Y+ + Sbjct: 1 MPTGTVKWFNTTKGYGFIKPD---DGGADVFVHITAVQRSGLQGLNEGQAIMYEM-KPQR 56 Query: 62 NGKYSAENLKLV 73 NGK +AE LK + Sbjct: 57 NGKMAAEELKPL 68 >gi|125624064|ref|YP_001032547.1| cold shock-like protein cspD2 [Lactococcus lactis subsp. cremoris MG1363] gi|125624081|ref|YP_001032564.1| cold shock protein cspD [Lactococcus lactis subsp. cremoris MG1363] gi|3850776|emb|CAA76697.1| cold shock protein D [Lactococcus lactis subsp. cremoris MG1363] gi|124492872|emb|CAL97830.1| cold shock-like protein cspD2 [Lactococcus lactis subsp. cremoris MG1363] gi|124492889|emb|CAL97848.1| cold shock protein cspD [Lactococcus lactis subsp. cremoris MG1363] gi|300070833|gb|ADJ60233.1| Cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000] gi|300070850|gb|ADJ60250.1| Cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000] gi|326407854|gb|ADZ64925.1| cold shock protein [Lactococcus lactis subsp. lactis CV56] Length = 66 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +E G D+F H SA+ S G +L EGQ V +D + Sbjct: 1 MANGTVKWFNATKGFGFIT----SEDGQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQR 56 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 57 G--PQAVNIT 64 >gi|114561918|ref|YP_749431.1| cold-shock DNA-binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114333211|gb|ABI70593.1| cold-shock DNA-binding protein family [Shewanella frigidimarina NCIMB 400] gi|149675718|dbj|BAF64739.1| cold shock protein [Shewanella livingstonensis] Length = 70 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ G DVF+H ++ S G L EGQ V++D Q G Sbjct: 6 TGLVKWFNEDKGFGFITPD---NGGADVFVHFRSITSEGFKTLAEGQKVSFDVEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + + Sbjct: 62 PQAANVVAV 70 >gi|197284696|ref|YP_002150568.1| cold shock protein [Proteus mirabilis HI4320] gi|227357693|ref|ZP_03842042.1| cold shock protein [Proteus mirabilis ATCC 29906] gi|194682183|emb|CAR41839.1| putative cold shock protein [Proteus mirabilis HI4320] gi|227162022|gb|EEI47036.1| cold shock protein [Proteus mirabilis ATCC 29906] Length = 70 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFITP + DVF+H SA+ S +L EGQ V++ +N A G Sbjct: 6 TGTVKWFNDDKGFGFITP---KDGSKDVFVHFSAIQSDSFKSLKEGQEVSFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVIGL 70 >gi|289435359|ref|YP_003465231.1| cold-shock domain family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|315283050|ref|ZP_07871326.1| putative cold-shock protein [Listeria marthii FSL S4-120] gi|315304007|ref|ZP_07874446.1| putative cold-shock protein [Listeria ivanovii FSL F6-596] gi|289171603|emb|CBH28149.1| cold-shock domain family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313613309|gb|EFR87177.1| putative cold-shock protein [Listeria marthii FSL S4-120] gi|313627624|gb|EFR96318.1| putative cold-shock protein [Listeria ivanovii FSL F6-596] Length = 66 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V+ Sbjct: 1 MQTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIEGDGFKTLDEGQSVEFEIVEGQ- 55 Query: 62 NGKYSAENLKL 72 G + + KL Sbjct: 56 RGPQAEKVTKL 66 >gi|229016986|ref|ZP_04173906.1| Cold shock-like protein cspB [Bacillus cereus AH1273] gi|229023167|ref|ZP_04179678.1| Cold shock-like protein cspB [Bacillus cereus AH1272] gi|228738092|gb|EEL88577.1| Cold shock-like protein cspB [Bacillus cereus AH1272] gi|228744257|gb|EEL94339.1| Cold shock-like protein cspB [Bacillus cereus AH1273] Length = 65 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI + DDVF+H SA+ G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIE----MDGSDDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|126733685|ref|ZP_01749432.1| cold shock protein CspA-related protein, putative [Roseobacter sp. CCS2] gi|126716551|gb|EBA13415.1| cold shock protein CspA-related protein, putative [Roseobacter sp. CCS2] Length = 68 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G DVF+H SAV +GL L + Q VT+D V+ Sbjct: 1 MATGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLQDDQKVTFD-VEAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESAVNLAL 67 >gi|108758693|ref|YP_628940.1| cold-shock protein CspC [Myxococcus xanthus DK 1622] gi|4193394|gb|AAD10035.1| CspC [Myxococcus xanthus] gi|108462573|gb|ABF87758.1| cold-shock protein CspC [Myxococcus xanthus DK 1622] Length = 67 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI +G G+DVF+H SA+ G L EGQ V ++ + Sbjct: 1 MATGTVKWFNDAKGFGFIVQDG---GGEDVFVHHSAINMDGFRTLQEGQKVEFEVGRGPK 57 Query: 62 NGKYSAENLK 71 A+N++ Sbjct: 58 G--LQAQNVR 65 >gi|89093186|ref|ZP_01166136.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp. MED92] gi|89082482|gb|EAR61704.1| cold-shock DNA-binding domain family protein [Oceanospirillum sp. MED92] Length = 67 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N +KG+GFI E +G DVF H SA+ G +L EGQ V + Q Sbjct: 1 MATTGTVKWFNDEKGFGFIEQE----NGPDVFAHFSAIQGDGFKSLAEGQKVEFTITQGQ 56 Query: 61 ANGKYSAENLKLV 73 AEN+ V Sbjct: 57 KG--PQAENIVKV 67 >gi|296536432|ref|ZP_06898531.1| cold shock protein [Roseomonas cervicalis ATCC 49957] gi|296263249|gb|EFH09775.1| cold shock protein [Roseomonas cervicalis ATCC 49957] Length = 81 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP KG+GFI PE + DVF+H S V AGL L EG+ V ++ Q Sbjct: 14 MPIGTVKWFNPTKGFGFIQPE---DGSKDVFVHISDVQRAGLQGLNEGERVEFEL-QRGR 69 Query: 62 NGKYSAENLKLV 73 GK SA NLK V Sbjct: 70 EGKVSAGNLKQV 81 >gi|238919761|ref|YP_002933276.1| hypothetical protein NT01EI_1865 [Edwardsiella ictaluri 93-146] gi|238869330|gb|ACR69041.1| conserved domain protein [Edwardsiella ictaluri 93-146] Length = 69 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFITP + DVF+H SA+ S G L EGQ V + Q+ Sbjct: 4 KNGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQSDGFKTLAEGQQVEFSI-QDSPR 59 Query: 63 GKYSAENLKL 72 G +A+ + L Sbjct: 60 GPAAADVIAL 69 >gi|187929805|ref|YP_001900292.1| cold-shock DNA-binding domain-containing protein [Ralstonia pickettii 12J] gi|241663931|ref|YP_002982291.1| cold-shock DNA-binding domain-containing protein [Ralstonia pickettii 12D] gi|309781480|ref|ZP_07676216.1| cold-shock protein [Ralstonia sp. 5_7_47FAA] gi|187726695|gb|ACD27860.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|240865958|gb|ACS63619.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] gi|308919893|gb|EFP65554.1| cold-shock protein [Ralstonia sp. 5_7_47FAA] Length = 67 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ E G+++F H SA+ AG L E Q V+++ Q Sbjct: 1 MALGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMAGFKTLKENQRVSFEVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQATNIQ 65 >gi|92113792|ref|YP_573720.1| cold-shock DNA-binding protein family protein [Chromohalobacter salexigens DSM 3043] gi|91796882|gb|ABE59021.1| cold-shock DNA-binding protein family [Chromohalobacter salexigens DSM 3043] Length = 67 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+PE + GDD+F H S + + G +L +GQ V++D Q Sbjct: 1 MATGTVKWFNDAKGFGFISPE---DGGDDLFAHFSEIQAEGFKSLQDGQKVSFDVTQGKK 57 Query: 62 NGKYSAENLK 71 A N+K Sbjct: 58 G--LQASNIK 65 >gi|54303515|ref|YP_133508.1| putative cold shock-like protein [Photobacterium profundum SS9] gi|46916945|emb|CAG23708.1| putative Cold shock-like protein [Photobacterium profundum SS9] Length = 69 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+A+ G L EGQ V++D Q G Sbjct: 5 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIATEGFKTLAEGQKVSFDVEQGQ-KG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PQAANVVAL 69 >gi|288556195|ref|YP_003428130.1| major cold shock protein [Bacillus pseudofirmus OF4] gi|288547355|gb|ADC51238.1| major cold shock protein [Bacillus pseudofirmus OF4] Length = 66 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ VT++ V+ + Sbjct: 1 MLEGTVKWFNAEKGFGFIERE----GGDDVFVHFSAIQIDGFKTLEEGQAVTFEIVEGNR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--EQAANVQ 64 >gi|209809400|ref|YP_002264938.1| cold shock-like protein [Aliivibrio salmonicida LFI1238] gi|208010962|emb|CAQ81368.1| cold shock-like protein [Aliivibrio salmonicida LFI1238] Length = 69 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFIT E G DVF H SA+ S G L EGQ VT++ Q G Sbjct: 5 TGTVKWFNEDKGFGFITQE---NGGPDVFAHFSAIQSEGFKTLKEGQAVTFEVEQG-PKG 60 Query: 64 KYSA 67 +A Sbjct: 61 PQAA 64 >gi|220931393|ref|YP_002508301.1| putative cold-shock DNA-binding domain protein [Halothermothrix orenii H 168] gi|219992703|gb|ACL69306.1| putative cold-shock DNA-binding domain protein [Halothermothrix orenii H 168] Length = 68 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +++ G +KW++ KG+GFI E GDDVF+H SA+ G +L EGQ V ++ VQ D Sbjct: 2 IIYNGKVKWFSDKKGFGFIEREA----GDDVFVHFSAIQKEGFKSLDEGQEVEFEVVQGD 57 Query: 61 ANGKYSAENLKL 72 G +A + L Sbjct: 58 -RGPQAANVVTL 68 >gi|311032516|ref|ZP_07710606.1| major cold shock protein [Bacillus sp. m3-13] Length = 66 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI + GDDVF+H SA+ G +L EGQ VT++ VQ + Sbjct: 1 MLQGTVKWFNAEKGFGFIE----RQDGDDVFVHFSAIQGEGFKSLEEGQSVTFEIVQGNR 56 Query: 62 NGKYSAEN 69 + + N Sbjct: 57 GDQAANVN 64 >gi|310823940|ref|YP_003956298.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1] gi|309397012|gb|ADO74471.1| Cold-shock protein CspD [Stigmatella aurantiaca DW4/3-1] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +G G+DVF H +A+ G L EGQ V +D + Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAINMDGFRTLQEGQKVQFDVARGPK 57 Query: 62 NGKYSAENLK 71 A+N++ Sbjct: 58 G--LQAQNVR 65 >gi|91793188|ref|YP_562839.1| CspD, cold shock [Shewanella denitrificans OS217] gi|91715190|gb|ABE55116.1| cold-shock DNA-binding protein family [Shewanella denitrificans OS217] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + GDDVF H S + G L GQ V ++ Q Sbjct: 1 MANGTVKWFNNAKGFGFICPD---QGGDDVFAHYSTIEMEGYRTLKAGQPVQFEVEQGPK 57 Query: 62 NGKYSA 67 SA Sbjct: 58 GMHASA 63 >gi|239918416|ref|YP_002957974.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC 2665] gi|281415387|ref|ZP_06247129.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC 2665] gi|6225210|sp|O30875|CSPA_MICLC RecName: Full=Major cold shock protein gi|2425105|gb|AAB70836.1| major cold-shock protein [Micrococcus luteus NCTC 2665] gi|239839623|gb|ACS31420.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC 2665] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI PE ++ DVF+H SA+ G L E V ++ Q+ Sbjct: 1 MAVGTVKWFNAEKGYGFIAPE---DNSADVFVHFSAIQGNGFKELQENDRVEFE-TQDGP 56 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 57 KGLQAANVTKL 67 >gi|75758582|ref|ZP_00738701.1| Cold shock protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206972882|ref|ZP_03233804.1| conserved domain protein [Bacillus cereus AH1134] gi|228905763|ref|ZP_04069678.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|228943462|ref|ZP_04105906.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976283|ref|ZP_04136754.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229073834|ref|ZP_04206924.1| Cold shock protein cspB [Bacillus cereus F65185] gi|229191418|ref|ZP_04318403.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|74493928|gb|EAO57025.1| Cold shock protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206731766|gb|EDZ48966.1| conserved domain protein [Bacillus cereus AH1134] gi|228592100|gb|EEK49934.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|228709285|gb|EEL61369.1| Cold shock protein cspB [Bacillus cereus F65185] gi|228783387|gb|EEM31495.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816242|gb|EEM62423.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853880|gb|EEM98623.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ VT+D Q Sbjct: 1 MEKGNVKWFNGEKGFGFIERE----GGDDVFVHFSAIQGEGYKTLEEGQAVTFDLEQGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQASNVR 64 >gi|15800638|ref|NP_286652.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H7 EDL933] gi|15830220|ref|NP_308993.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H7 str. Sakai] gi|16128848|ref|NP_415401.1| inhibitor of DNA replication, cold shock protein homolog [Escherichia coli str. K-12 substr. MG1655] gi|24112256|ref|NP_706766.1| stationary phase/starvation inducible regulatory protein CspD [Shigella flexneri 2a str. 301] gi|30062368|ref|NP_836539.1| stationary phase/starvation inducible regulatory protein CspD [Shigella flexneri 2a str. 2457T] gi|74311425|ref|YP_309844.1| stationary phase/starvation inducible regulatory protein CspD [Shigella sonnei Ss046] gi|82543367|ref|YP_407314.1| stationary phase/starvation inducible regulatory protein CspD [Shigella boydii Sb227] gi|82777597|ref|YP_403946.1| stationary phase/starvation inducible regulatory protein CspD [Shigella dysenteriae Sd197] gi|89107731|ref|AP_001511.1| cold shock protein homolog [Escherichia coli str. K-12 substr. W3110] gi|110641081|ref|YP_668811.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli 536] gi|157156996|ref|YP_001462077.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli E24377A] gi|157160403|ref|YP_001457721.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli HS] gi|168752461|ref|ZP_02777483.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4113] gi|168758796|ref|ZP_02783803.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4401] gi|168765085|ref|ZP_02790092.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4501] gi|168769857|ref|ZP_02794864.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4486] gi|168772142|ref|ZP_02797149.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4486] gi|168777873|ref|ZP_02802880.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4196] gi|168783791|ref|ZP_02808798.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4076] gi|168789132|ref|ZP_02814139.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC869] gi|168802711|ref|ZP_02827718.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC508] gi|170020717|ref|YP_001725671.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli ATCC 8739] gi|170080539|ref|YP_001729859.1| cold shock protein-like protein [Escherichia coli str. K-12 substr. DH10B] gi|170683368|ref|YP_001744327.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli SMS-3-5] gi|170769169|ref|ZP_02903622.1| cold shock domain protein CspD [Escherichia albertii TW07627] gi|187731789|ref|YP_001880922.1| stationary phase/starvation inducible regulatory protein CspD [Shigella boydii CDC 3083-94] gi|188495418|ref|ZP_03002688.1| cold shock domain protein CspD [Escherichia coli 53638] gi|191167603|ref|ZP_03029414.1| cold shock domain protein CspD [Escherichia coli B7A] gi|191172141|ref|ZP_03033685.1| cold shock domain protein CspD [Escherichia coli F11] gi|193064669|ref|ZP_03045748.1| cold shock domain protein CspD [Escherichia coli E22] gi|193071761|ref|ZP_03052657.1| cold shock domain protein CspD [Escherichia coli E110019] gi|194428406|ref|ZP_03060947.1| cold shock domain protein CspD [Escherichia coli B171] gi|194433169|ref|ZP_03065451.1| cold shock domain protein CspD [Shigella dysenteriae 1012] gi|194438741|ref|ZP_03070828.1| cold shock domain protein CspD [Escherichia coli 101-1] gi|195939543|ref|ZP_03084925.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H7 str. EC4024] gi|208807912|ref|ZP_03250249.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4206] gi|208814789|ref|ZP_03255968.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4045] gi|208822048|ref|ZP_03262367.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4042] gi|209400231|ref|YP_002269554.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4115] gi|209918129|ref|YP_002292213.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli SE11] gi|215486011|ref|YP_002328442.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O127:H6 str. E2348/69] gi|217324268|ref|ZP_03440352.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. TW14588] gi|218553466|ref|YP_002386379.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli IAI1] gi|218557784|ref|YP_002390697.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli S88] gi|218688662|ref|YP_002396874.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli ED1a] gi|218694354|ref|YP_002402021.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli 55989] gi|218700605|ref|YP_002408234.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli IAI39] gi|218704309|ref|YP_002411828.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli UMN026] gi|227884154|ref|ZP_04001959.1| cold shock family protein CspD [Escherichia coli 83972] gi|238900139|ref|YP_002925935.1| cold shock protein-like protein [Escherichia coli BW2952] gi|253774090|ref|YP_003036921.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160995|ref|YP_003044103.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli B str. REL606] gi|254792081|ref|YP_003076918.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H7 str. TW14359] gi|256020999|ref|ZP_05434864.1| stationary phase/starvation inducible regulatory protein CspD [Shigella sp. D9] gi|256023493|ref|ZP_05437358.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia sp. 4_1_40B] gi|260843131|ref|YP_003220909.1| cold shock protein homolog CspD [Escherichia coli O103:H2 str. 12009] gi|260854172|ref|YP_003228063.1| cold shock protein homolog CspD [Escherichia coli O26:H11 str. 11368] gi|260867053|ref|YP_003233455.1| cold shock protein homolog CspD [Escherichia coli O111:H- str. 11128] gi|261225536|ref|ZP_05939817.1| cold shock protein-like protein [Escherichia coli O157:H7 str. FRIK2000] gi|261258495|ref|ZP_05951028.1| hypothetical protein EscherichiacoliO157EcO_22126 [Escherichia coli O157:H7 str. FRIK966] gi|293404188|ref|ZP_06648182.1| cold shock-like protein cspD [Escherichia coli FVEC1412] gi|293409259|ref|ZP_06652835.1| cold shock domain-containing protein CspD [Escherichia coli B354] gi|297516223|ref|ZP_06934609.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli OP50] gi|298379969|ref|ZP_06989574.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli FVEC1302] gi|300817018|ref|ZP_07097237.1| cold shock domain protein CspD [Escherichia coli MS 107-1] gi|300823618|ref|ZP_07103745.1| cold shock domain protein CspD [Escherichia coli MS 119-7] gi|300895697|ref|ZP_07114293.1| cold shock domain protein CspD [Escherichia coli MS 198-1] gi|300902416|ref|ZP_07120398.1| cold shock domain protein CspD [Escherichia coli MS 84-1] gi|300921088|ref|ZP_07137472.1| cold shock domain protein CspD [Escherichia coli MS 115-1] gi|300922549|ref|ZP_07138650.1| cold shock domain protein CspD [Escherichia coli MS 182-1] gi|300928423|ref|ZP_07143956.1| cold shock domain protein CspD [Escherichia coli MS 187-1] gi|300935726|ref|ZP_07150694.1| cold shock domain protein CspD [Escherichia coli MS 21-1] gi|300950108|ref|ZP_07164054.1| cold shock domain protein CspD [Escherichia coli MS 116-1] gi|300954452|ref|ZP_07166904.1| cold shock domain protein CspD [Escherichia coli MS 175-1] gi|300978556|ref|ZP_07174309.1| cold shock domain protein CspD [Escherichia coli MS 45-1] gi|300991781|ref|ZP_07179644.1| cold shock domain protein CspD [Escherichia coli MS 200-1] gi|301020524|ref|ZP_07184608.1| cold shock domain protein CspD [Escherichia coli MS 69-1] gi|301024393|ref|ZP_07188080.1| cold shock domain protein CspD [Escherichia coli MS 196-1] gi|301051190|ref|ZP_07198020.1| cold shock domain protein CspD [Escherichia coli MS 185-1] gi|301305346|ref|ZP_07211441.1| cold shock domain protein CspD [Escherichia coli MS 124-1] gi|301328606|ref|ZP_07221667.1| cold shock domain protein CspD [Escherichia coli MS 78-1] gi|301646324|ref|ZP_07246212.1| cold shock domain protein CspD [Escherichia coli MS 146-1] gi|306812670|ref|ZP_07446863.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli NC101] gi|307137508|ref|ZP_07496864.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli H736] gi|307311732|ref|ZP_07591372.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|309783998|ref|ZP_07678642.1| cold shock domain protein CspD [Shigella dysenteriae 1617] gi|309795323|ref|ZP_07689741.1| cold shock domain protein CspD [Escherichia coli MS 145-7] gi|312969051|ref|ZP_07783258.1| cold shock domain protein CspD [Escherichia coli 2362-75] gi|312971007|ref|ZP_07785186.1| cold shock domain protein CspD [Escherichia coli 1827-70] gi|331641401|ref|ZP_08342536.1| cold shock domain protein CspD [Escherichia coli H736] gi|331646148|ref|ZP_08347251.1| cold shock domain protein CspD [Escherichia coli M605] gi|331651899|ref|ZP_08352918.1| cold shock domain protein CspD [Escherichia coli M718] gi|331656952|ref|ZP_08357914.1| cold shock domain protein CspD [Escherichia coli TA206] gi|331662294|ref|ZP_08363217.1| cold shock domain protein CspD [Escherichia coli TA143] gi|331667254|ref|ZP_08368119.1| cold shock domain protein CspD [Escherichia coli TA271] gi|331672417|ref|ZP_08373208.1| cold shock domain protein CspD [Escherichia coli TA280] gi|331676668|ref|ZP_08377364.1| cold shock domain protein CspD [Escherichia coli H591] gi|331682389|ref|ZP_08383008.1| cold shock domain protein CspD [Escherichia coli H299] gi|71154152|sp|P0A970|CSPD_ECO57 RecName: Full=Cold shock-like protein CspD; Short=CSP-D gi|71154153|sp|P0A969|CSPD_ECOL6 RecName: Full=Cold shock-like protein CspD; Short=CSP-D gi|71154154|sp|P0A968|CSPD_ECOLI RecName: Full=Cold shock-like protein CspD; Short=CSP-D gi|71154155|sp|P0A971|CSPD_SHIFL RecName: Full=Cold shock-like protein CspD; Short=CSP-D gi|12513910|gb|AAG55262.1|AE005269_6 cold shock protein [Escherichia coli O157:H7 str. EDL933] gi|1651400|dbj|BAA35599.1| cold shock protein homolog [Escherichia coli str. K12 substr. W3110] gi|1787107|gb|AAC73967.1| inhibitor of DNA replication, cold shock protein homolog [Escherichia coli str. K-12 substr. MG1655] gi|13360425|dbj|BAB34389.1| cold shock protein [Escherichia coli O157:H7 str. Sakai] gi|24051106|gb|AAN42473.1| cold shock protein [Shigella flexneri 2a str. 301] gi|30040613|gb|AAP16345.1| cold shock protein [Shigella flexneri 2a str. 2457T] gi|73854902|gb|AAZ87609.1| cold shock protein [Shigella sonnei Ss046] gi|81241745|gb|ABB62455.1| cold shock protein [Shigella dysenteriae Sd197] gi|81244778|gb|ABB65486.1| cold shock protein [Shigella boydii Sb227] gi|110342673|gb|ABG68910.1| cold shock-like protein CspD [Escherichia coli 536] gi|157066083|gb|ABV05338.1| cold shock domain protein CspD [Escherichia coli HS] gi|157079026|gb|ABV18734.1| cold shock domain protein CspD [Escherichia coli E24377A] gi|169755645|gb|ACA78344.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|169888374|gb|ACB02081.1| cold shock protein-like protein [Escherichia coli str. K-12 substr. DH10B] gi|170121821|gb|EDS90752.1| cold shock domain protein CspD [Escherichia albertii TW07627] gi|170521086|gb|ACB19264.1| cold shock domain protein CspD [Escherichia coli SMS-3-5] gi|187428781|gb|ACD08055.1| cold shock domain protein CspD [Shigella boydii CDC 3083-94] gi|187766991|gb|EDU30835.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4196] gi|188013698|gb|EDU51820.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4113] gi|188490617|gb|EDU65720.1| cold shock domain protein CspD [Escherichia coli 53638] gi|188998900|gb|EDU67886.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4076] gi|189354451|gb|EDU72870.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4401] gi|189359394|gb|EDU77813.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4486] gi|189361135|gb|EDU79554.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4486] gi|189365045|gb|EDU83461.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4501] gi|189371144|gb|EDU89560.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC869] gi|189375363|gb|EDU93779.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC508] gi|190902364|gb|EDV62102.1| cold shock domain protein CspD [Escherichia coli B7A] gi|190907668|gb|EDV67263.1| cold shock domain protein CspD [Escherichia coli F11] gi|192927726|gb|EDV82341.1| cold shock domain protein CspD [Escherichia coli E22] gi|192954918|gb|EDV85425.1| cold shock domain protein CspD [Escherichia coli E110019] gi|194413621|gb|EDX29902.1| cold shock domain protein CspD [Escherichia coli B171] gi|194418666|gb|EDX34753.1| cold shock domain protein CspD [Shigella dysenteriae 1012] gi|194422373|gb|EDX38373.1| cold shock domain protein CspD [Escherichia coli 101-1] gi|208727713|gb|EDZ77314.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4206] gi|208731437|gb|EDZ80125.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4045] gi|208737533|gb|EDZ85216.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4042] gi|209161631|gb|ACI39064.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. EC4115] gi|209911388|dbj|BAG76462.1| cold shock-like protein [Escherichia coli SE11] gi|215264083|emb|CAS08425.1| cold shock protein homolog [Escherichia coli O127:H6 str. E2348/69] gi|217320489|gb|EEC28913.1| cold shock domain protein CspD [Escherichia coli O157:H7 str. TW14588] gi|218351086|emb|CAU96790.1| cold shock protein homolog [Escherichia coli 55989] gi|218360234|emb|CAQ97784.1| cold shock protein homolog [Escherichia coli IAI1] gi|218364553|emb|CAR02237.1| cold shock protein homolog [Escherichia coli S88] gi|218370591|emb|CAR18398.1| cold shock protein homolog [Escherichia coli IAI39] gi|218426226|emb|CAR07051.1| cold shock protein homolog [Escherichia coli ED1a] gi|218431406|emb|CAR12284.1| cold shock protein homolog [Escherichia coli UMN026] gi|227838906|gb|EEJ49372.1| cold shock family protein CspD [Escherichia coli 83972] gi|238860165|gb|ACR62163.1| cold shock protein-like protein [Escherichia coli BW2952] gi|242376695|emb|CAQ31408.1| DNA replication inhibitor [Escherichia coli BL21(DE3)] gi|253325134|gb|ACT29736.1| cold-shock DNA-binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972896|gb|ACT38567.1| cold shock protein-like protein [Escherichia coli B str. REL606] gi|253977110|gb|ACT42780.1| cold shock protein-like protein [Escherichia coli BL21(DE3)] gi|254591481|gb|ACT70842.1| cold shock protein-like protein [Escherichia coli O157:H7 str. TW14359] gi|257752821|dbj|BAI24323.1| cold shock protein homolog CspD [Escherichia coli O26:H11 str. 11368] gi|257758278|dbj|BAI29775.1| cold shock protein homolog CspD [Escherichia coli O103:H2 str. 12009] gi|257763409|dbj|BAI34904.1| cold shock protein homolog CspD [Escherichia coli O111:H- str. 11128] gi|260449973|gb|ACX40395.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|281178015|dbj|BAI54345.1| cold shock-like protein [Escherichia coli SE15] gi|284920734|emb|CBG33797.1| cold shock-like protein CspD [Escherichia coli 042] gi|291428774|gb|EFF01799.1| cold shock-like protein cspD [Escherichia coli FVEC1412] gi|291469727|gb|EFF12211.1| cold shock domain-containing protein CspD [Escherichia coli B354] gi|294490756|gb|ADE89512.1| cold shock domain protein CspD [Escherichia coli IHE3034] gi|298279667|gb|EFI21175.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli FVEC1302] gi|299880400|gb|EFI88611.1| cold shock domain protein CspD [Escherichia coli MS 196-1] gi|300297211|gb|EFJ53596.1| cold shock domain protein CspD [Escherichia coli MS 185-1] gi|300305535|gb|EFJ60055.1| cold shock domain protein CspD [Escherichia coli MS 200-1] gi|300318602|gb|EFJ68386.1| cold shock domain protein CspD [Escherichia coli MS 175-1] gi|300360366|gb|EFJ76236.1| cold shock domain protein CspD [Escherichia coli MS 198-1] gi|300398657|gb|EFJ82195.1| cold shock domain protein CspD [Escherichia coli MS 69-1] gi|300405448|gb|EFJ88986.1| cold shock domain protein CspD [Escherichia coli MS 84-1] gi|300409635|gb|EFJ93173.1| cold shock domain protein CspD [Escherichia coli MS 45-1] gi|300411939|gb|EFJ95249.1| cold shock domain protein CspD [Escherichia coli MS 115-1] gi|300421095|gb|EFK04406.1| cold shock domain protein CspD [Escherichia coli MS 182-1] gi|300450523|gb|EFK14143.1| cold shock domain protein CspD [Escherichia coli MS 116-1] gi|300459089|gb|EFK22582.1| cold shock domain protein CspD [Escherichia coli MS 21-1] gi|300463586|gb|EFK27079.1| cold shock domain protein CspD [Escherichia coli MS 187-1] gi|300523818|gb|EFK44887.1| cold shock domain protein CspD [Escherichia coli MS 119-7] gi|300530370|gb|EFK51432.1| cold shock domain protein CspD [Escherichia coli MS 107-1] gi|300839364|gb|EFK67124.1| cold shock domain protein CspD [Escherichia coli MS 124-1] gi|300844998|gb|EFK72758.1| cold shock domain protein CspD [Escherichia coli MS 78-1] gi|301075427|gb|EFK90233.1| cold shock domain protein CspD [Escherichia coli MS 146-1] gi|305853433|gb|EFM53872.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli NC101] gi|306908287|gb|EFN38786.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|307552723|gb|ADN45498.1| cold shock-like protein CspD [Escherichia coli ABU 83972] gi|307627710|gb|ADN72014.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli UM146] gi|308120973|gb|EFO58235.1| cold shock domain protein CspD [Escherichia coli MS 145-7] gi|308928141|gb|EFP73604.1| cold shock domain protein CspD [Shigella dysenteriae 1617] gi|310336768|gb|EFQ01935.1| cold shock domain protein CspD [Escherichia coli 1827-70] gi|312286453|gb|EFR14366.1| cold shock domain protein CspD [Escherichia coli 2362-75] gi|312945398|gb|ADR26225.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O83:H1 str. NRG 857C] gi|313650207|gb|EFS14619.1| cold shock domain protein CspD [Shigella flexneri 2a str. 2457T] gi|315060166|gb|ADT74493.1| cold shock protein-like protein [Escherichia coli W] gi|315135529|dbj|BAJ42688.1| cold shock protein [Escherichia coli DH1] gi|315257918|gb|EFU37886.1| cold shock domain protein CspD [Escherichia coli MS 85-1] gi|315287286|gb|EFU46697.1| cold shock domain protein CspD [Escherichia coli MS 110-3] gi|315291074|gb|EFU50437.1| cold shock domain protein CspD [Escherichia coli MS 153-1] gi|315296656|gb|EFU55951.1| cold shock domain protein CspD [Escherichia coli MS 16-3] gi|315619192|gb|EFU99771.1| cold shock domain protein CspD [Escherichia coli 3431] gi|320175321|gb|EFW50427.1| Cold shock protein CspD [Shigella dysenteriae CDC 74-1112] gi|320180598|gb|EFW55527.1| Cold shock protein CspD [Shigella boydii ATCC 9905] gi|320183181|gb|EFW58039.1| Cold shock protein CspD [Shigella flexneri CDC 796-83] gi|320192634|gb|EFW67275.1| Cold shock protein CspD [Escherichia coli O157:H7 str. EC1212] gi|320196625|gb|EFW71248.1| Cold shock protein CspD [Escherichia coli WV_060327] gi|320202275|gb|EFW76846.1| Cold shock protein CspD [Escherichia coli EC4100B] gi|320637751|gb|EFX07543.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H7 str. G5101] gi|320642874|gb|EFX12075.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H- str. 493-89] gi|320648331|gb|EFX16986.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H- str. H 2687] gi|320654169|gb|EFX22237.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659793|gb|EFX27349.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O55:H7 str. USDA 5905] gi|320664263|gb|EFX31414.1| stationary phase/starvation inducible regulatory protein CspD [Escherichia coli O157:H7 str. LSU-61] gi|323155746|gb|EFZ41915.1| cold shock domain protein CspD [Escherichia coli EPECa14] gi|323159505|gb|EFZ45485.1| cold shock domain protein CspD [Escherichia coli E128010] gi|323165817|gb|EFZ51603.1| cold shock domain protein CspD [Shigella sonnei 53G] gi|323172149|gb|EFZ57787.1| cold shock domain protein CspD [Escherichia coli LT-68] gi|323175498|gb|EFZ61093.1| cold shock domain protein CspD [Escherichia coli 1180] gi|323185155|gb|EFZ70520.1| cold shock domain protein CspD [Escherichia coli 1357] gi|323190702|gb|EFZ75971.1| cold shock domain protein CspD [Escherichia coli RN587/1] gi|323379277|gb|ADX51545.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323942797|gb|EGB38962.1| cold shock domain-containing protein CspD [Escherichia coli E482] gi|323947162|gb|EGB43172.1| cold shock domain-containing protein CspD [Escherichia coli H120] gi|323953416|gb|EGB49282.1| cold shock domain-containing protein CspD [Escherichia coli H252] gi|323958169|gb|EGB53878.1| cold shock domain-containing protein CspD [Escherichia coli H263] gi|323962993|gb|EGB58565.1| cold shock domain-containing protein CspD [Escherichia coli H489] gi|323967316|gb|EGB62739.1| cold shock domain-containing protein CspD [Escherichia coli M863] gi|323969635|gb|EGB64922.1| cold shock domain-containing protein CspD [Escherichia coli TA007] gi|323976733|gb|EGB71821.1| cold shock domain-containing protein CspD [Escherichia coli TW10509] gi|324009834|gb|EGB79053.1| cold shock domain protein CspD [Escherichia coli MS 57-2] gi|324012987|gb|EGB82206.1| cold shock domain protein CspD [Escherichia coli MS 60-1] gi|324019030|gb|EGB88249.1| cold shock domain protein CspD [Escherichia coli MS 117-3] gi|324116094|gb|EGC10018.1| cold shock domain-containing protein CspD [Escherichia coli E1167] gi|326346202|gb|EGD69940.1| Cold shock protein CspD [Escherichia coli O157:H7 str. 1044] gi|327253668|gb|EGE65297.1| cold shock domain protein CspD [Escherichia coli STEC_7v] gi|330910662|gb|EGH39172.1| cold shock protein CspD [Escherichia coli AA86] gi|331038199|gb|EGI10419.1| cold shock domain protein CspD [Escherichia coli H736] gi|331044900|gb|EGI17027.1| cold shock domain protein CspD [Escherichia coli M605] gi|331050177|gb|EGI22235.1| cold shock domain protein CspD [Escherichia coli M718] gi|331055200|gb|EGI27209.1| cold shock domain protein CspD [Escherichia coli TA206] gi|331060716|gb|EGI32680.1| cold shock domain protein CspD [Escherichia coli TA143] gi|331065610|gb|EGI37503.1| cold shock domain protein CspD [Escherichia coli TA271] gi|331070612|gb|EGI41976.1| cold shock domain protein CspD [Escherichia coli TA280] gi|331075357|gb|EGI46655.1| cold shock domain protein CspD [Escherichia coli H591] gi|331080020|gb|EGI51199.1| cold shock domain protein CspD [Escherichia coli H299] gi|332088860|gb|EGI93972.1| cold shock domain protein CspD [Shigella boydii 5216-82] gi|332091104|gb|EGI96194.1| cold shock domain protein CspD [Shigella dysenteriae 155-74] gi|332097053|gb|EGJ02036.1| cold shock domain protein CspD [Shigella boydii 3594-74] gi|332342268|gb|AEE55602.1| cold shock domain protein CspD [Escherichia coli UMNK88] gi|332759795|gb|EGJ90098.1| cold shock domain protein CspD [Shigella flexneri 4343-70] gi|332760573|gb|EGJ90862.1| cold shock domain protein CspD [Shigella flexneri 2747-71] gi|332762936|gb|EGJ93186.1| cold shock domain protein CspD [Shigella flexneri K-671] gi|332768058|gb|EGJ98244.1| cold shock domain protein CspD [Shigella flexneri 2930-71] gi|333006683|gb|EGK26182.1| cold shock domain protein CspD [Shigella flexneri VA-6] gi|333006920|gb|EGK26415.1| cold shock domain protein CspD [Shigella flexneri K-218] gi|333008808|gb|EGK28268.1| cold shock domain protein CspD [Shigella flexneri K-272] gi|333020115|gb|EGK39385.1| cold shock domain protein CspD [Shigella flexneri K-227] gi|333021002|gb|EGK40260.1| cold shock domain protein CspD [Shigella flexneri K-304] Length = 74 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D Q Sbjct: 1 MEKGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQG-P 56 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 57 KGNHASVIVPV 67 >gi|317491463|ref|ZP_07949899.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921010|gb|EFV42333.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 69 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI + G DVF+H SA+AS G L EGQ V Y Q+ Sbjct: 4 KTGQVKWFNESKGFGFIEQH---DGGKDVFVHFSAIASEGFKTLAEGQRVEYTI-QDSPR 59 Query: 63 GKYSAENLKL 72 G +A + L Sbjct: 60 GPAAANVVAL 69 >gi|206896315|ref|YP_002247470.1| hypothetical protein COPRO5265_1162 [Coprothermobacter proteolyticus DSM 5265] gi|206738932|gb|ACI18010.1| conserved domain protein [Coprothermobacter proteolyticus DSM 5265] Length = 84 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW++ KGYGFIT + + DVF+H SA+ G L EG+ V ++ + A Sbjct: 18 MYAGTVKWFDAQKGYGFITRD---DGEGDVFVHFSAIEGDGFKTLNEGEKVEFEVSRG-A 73 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 74 KGPQAAHVVK 83 >gi|28870519|ref|NP_793138.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28853767|gb|AAO56833.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 89 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G + +D+F H SA+ G L GQ V ++ +Q Sbjct: 1 MLNGKVKWFNNAKGYGFILEDGKPD--EDLFAHYSAIQMDGYKTLKAGQPVRFEIIQGPK 58 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 59 G--LHAVNIQ 66 >gi|114321823|ref|YP_743506.1| cold-shock DNA-binding protein family protein [Alkalilimnicola ehrlichii MLHE-1] gi|114228217|gb|ABI58016.1| cold-shock DNA-binding protein family [Alkalilimnicola ehrlichii MLHE-1] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ KG+GFITP T+ G DVF+H SA+ +G +L EGQ V ++ QN Sbjct: 1 MITGTVKWFDDAKGFGFITP---TDGGKDVFVHHSAINGSGFKSLAEGQQVQFE-TQNTP 56 Query: 62 NGKYSAEN 69 G +A Sbjct: 57 KGLAAANV 64 >gi|313891994|ref|ZP_07825595.1| cold shock-like protein CspE [Dialister microaerophilus UPII 345-E] gi|329120945|ref|ZP_08249576.1| cold shock protein [Dialister micraerophilus DSM 19965] gi|313119637|gb|EFR42828.1| cold shock-like protein CspE [Dialister microaerophilus UPII 345-E] gi|327471107|gb|EGF16561.1| cold shock protein [Dialister micraerophilus DSM 19965] Length = 65 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ +KGYGFI E G DVF+H SA+ + G LTEGQ V +D ++ A G Sbjct: 2 KGTVKWFSAEKGYGFIERE----EGGDVFVHFSAIQTEGFKTLTEGQKVEFDIIEG-ARG 56 Query: 64 KYSAENL 70 +A + Sbjct: 57 PQAANVV 63 >gi|257884506|ref|ZP_05664159.1| cold-shock protein [Enterococcus faecium 1,231,501] gi|257820344|gb|EEV47492.1| cold-shock protein [Enterococcus faecium 1,231,501] Length = 66 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ V+YD V++ Sbjct: 1 MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQGDGFKTLEEGQAVSYD-VEDGQ 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGPQAINIVK 65 >gi|325983251|ref|YP_004295653.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas sp. AL212] gi|325532770|gb|ADZ27491.1| cold-shock DNA-binding domain protein [Nitrosomonas sp. AL212] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H SA++S G +L E Q VT+D Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGGEDIFAHFSAISSGGYKSLREAQRVTFDIT-TGP 56 Query: 62 NGKYSAENL 70 GK ++ + Sbjct: 57 KGKQASNIV 65 >gi|297560234|ref|YP_003679208.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844682|gb|ADH66702.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI +G G DVF H SA+ + G L EGQ V +D Q Sbjct: 1 MATGKVKWFNGEKGFGFIEQDG---GGPDVFAHYSAIQANGYRELAEGQNVEFDVTQGAK 57 Query: 62 NGKYSAENLKLV 73 A+N+ L+ Sbjct: 58 G--LQADNITLI 67 >gi|262200587|ref|YP_003271795.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] gi|262083934|gb|ACY19902.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+ E DDVF+H S + +G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAPD---EGSDDVFVHYSEIQGSGFRTLEENQRVEFEVGQGTK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|170725719|ref|YP_001759745.1| cold-shock DNA-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169811066|gb|ACA85650.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC 51908] Length = 70 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI+ E G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 6 TGTVKWFNEEKGFGFISQE---NGGADVFVHFRAIASDGFKTLAEGQKVSFEVEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 LQAANVVAL 70 >gi|326202744|ref|ZP_08192612.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens DSM 2782] gi|325987328|gb|EGD48156.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens DSM 2782] Length = 66 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFIT + G+DVF+H S++ S+G +L EGQ V +D + Sbjct: 1 MNTGIVKWFNAEKGFGFITVD----GGEDVFVHFSSIQSSGYKSLDEGQRVNFDIEKGQR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--LQATNV 63 >gi|254463779|ref|ZP_05077190.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] gi|206684687|gb|EDZ45169.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] Length = 68 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE D+F+H SA+ AG+ L +GQ VT+D ++ Sbjct: 1 MANGTVKWFNSQKGFGFIAPEH---GSRDIFVHISALERAGIQQLDDGQAVTFDI-ESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESASNLAL 67 >gi|114563427|ref|YP_750940.1| cold-shock DNA-binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114334720|gb|ABI72102.1| cold-shock DNA-binding protein family [Shewanella frigidimarina NCIMB 400] gi|149675688|dbj|BAF64723.1| cold shock protein [Shewanella livingstonensis] Length = 68 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G+DVF H S + G L GQ V ++ + Sbjct: 1 MANGTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVCFEVEEGPK 57 Query: 62 NGKYSA 67 SA Sbjct: 58 GMHASA 63 >gi|288556391|ref|YP_003428326.1| cold-shock DNA-binding protein family protein [Bacillus pseudofirmus OF4] gi|288547551|gb|ADC51434.1| cold-shock DNA-binding protein family protein [Bacillus pseudofirmus OF4] Length = 66 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ VT++ Q Sbjct: 1 MEQGTVKWFNAEKGFGFIE----IEGGDDVFVHFSAIQGEGFKSLDEGQKVTFETEQGQR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--LQAVNV 63 >gi|229084702|ref|ZP_04216967.1| Cold shock-like protein cspB [Bacillus cereus Rock3-44] gi|228698586|gb|EEL51306.1| Cold shock-like protein cspB [Bacillus cereus Rock3-44] Length = 65 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D V+ + G Sbjct: 2 QGKVKWFNNEKGFGFIE----IEGADDVFVHFSAIQGDGYKALEEGQEVSFDIVEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|146307418|ref|YP_001187883.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina ymp] gi|145575619|gb|ABP85151.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp] Length = 89 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G E D+F H SA+ G L GQ V ++ VQ Sbjct: 1 MLSGKVKWFNNAKGYGFILADGRDE---DLFAHYSAIQMDGYKTLKAGQPVRFEIVQGPK 57 Query: 62 NGKYSAENLKLV 73 A N+ V Sbjct: 58 G--LHAVNISAV 67 >gi|71726094|gb|AAZ39217.1| cold shock transcription regulator [Janthinobacterium lividum] gi|323530566|gb|ADX95748.1| cold shock-like protein CspD [Janthinobacterium sp. Ant5-2] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ E G+D+F H SA+ S G +L E Q V+++ Sbjct: 1 MATGIVKWFNDSKGFGFITPD---EGGEDLFAHFSAIQSNGFKSLQENQRVSFEVT-AGP 56 Query: 62 NGKYSAENLKLV 73 GK A N++ + Sbjct: 57 KGKQ-ASNIQPI 67 >gi|146312144|ref|YP_001177218.1| cold-shock DNA-binding protein family protein [Enterobacter sp. 638] gi|145319020|gb|ABP61167.1| cold-shock DNA-binding protein family [Enterobacter sp. 638] Length = 70 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFITP + DVF+H SA+ S+ L EGQ V + +N A G Sbjct: 6 TGLVKWFNSEKGFGFITP---ADGSKDVFVHFSAIQSSDYKTLDEGQKVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 +A L Sbjct: 62 PAAANVTAL 70 >gi|15830399|ref|NP_309172.1| cold shock protein CspG [Escherichia coli O157:H7 str. Sakai] gi|16128956|ref|NP_415510.1| cold shock protein homolog, cold-inducible [Escherichia coli str. K-12 substr. MG1655] gi|26247008|ref|NP_753048.1| cold shock protein CspG [Escherichia coli CFT073] gi|74311547|ref|YP_309966.1| cold shock protein CspG [Shigella sonnei Ss046] gi|82544687|ref|YP_408634.1| cold shock protein CspG [Shigella boydii Sb227] gi|89107840|ref|AP_001620.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|91210080|ref|YP_540066.1| cold shock protein CspG [Escherichia coli UTI89] gi|110641171|ref|YP_668901.1| cold shock protein CspG [Escherichia coli 536] gi|157157933|ref|YP_001462221.1| cold shock protein CspG [Escherichia coli E24377A] gi|157160508|ref|YP_001457826.1| cold shock protein CspG [Escherichia coli HS] gi|168747396|ref|ZP_02772418.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|168754310|ref|ZP_02779317.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|168763226|ref|ZP_02788233.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|168767487|ref|ZP_02792494.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|168773676|ref|ZP_02798683.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|168781006|ref|ZP_02806013.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|168787495|ref|ZP_02812502.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|168800619|ref|ZP_02825626.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|170020611|ref|YP_001725565.1| cold shock protein CspG [Escherichia coli ATCC 8739] gi|170080648|ref|YP_001729968.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|170683191|ref|YP_001744186.1| cold shock protein CspG [Escherichia coli SMS-3-5] gi|187730656|ref|YP_001880813.1| cold shock protein CspG [Shigella boydii CDC 3083-94] gi|188493174|ref|ZP_03000444.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|191166565|ref|ZP_03028394.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|191172438|ref|ZP_03033979.1| cold shock DNA-binding protein [Escherichia coli F11] gi|193066327|ref|ZP_03047377.1| cold shock DNA-binding protein [Escherichia coli E22] gi|193070805|ref|ZP_03051739.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194429832|ref|ZP_03062345.1| cold shock DNA-binding protein [Escherichia coli B171] gi|194432411|ref|ZP_03064698.1| cold shock DNA-binding protein [Shigella dysenteriae 1012] gi|194438072|ref|ZP_03070165.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|195935247|ref|ZP_03080629.1| cold shock protein CspG [Escherichia coli O157:H7 str. EC4024] gi|208806958|ref|ZP_03249295.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208814978|ref|ZP_03256157.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208822652|ref|ZP_03262971.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209398274|ref|YP_002269715.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209918242|ref|YP_002292326.1| cold shock protein CspG [Escherichia coli SE11] gi|215486106|ref|YP_002328537.1| cold shock protein CspG [Escherichia coli O127:H6 str. E2348/69] gi|217324361|ref|ZP_03440445.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|218553577|ref|YP_002386490.1| cold shock protein CspG [Escherichia coli IAI1] gi|218557881|ref|YP_002390794.1| cold shock protein CspG [Escherichia coli S88] gi|218688878|ref|YP_002397090.1| cold shock protein CspG [Escherichia coli ED1a] gi|218694525|ref|YP_002402192.1| cold shock protein CspG [Escherichia coli 55989] gi|218700498|ref|YP_002408127.1| cold shock protein CspG [Escherichia coli IAI39] gi|218704406|ref|YP_002411925.1| cold shock protein CspG [Escherichia coli UMN026] gi|227884058|ref|ZP_04001863.1| CspA family cold shock transcriptional regulator [Escherichia coli 83972] gi|237707032|ref|ZP_04537513.1| cold shock protein CspG [Escherichia sp. 3_2_53FAA] gi|238900249|ref|YP_002926045.1| DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|253773981|ref|YP_003036812.1| cold shock protein CspG [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161102|ref|YP_003044210.1| cold shock protein CspG [Escherichia coli B str. REL606] gi|254792247|ref|YP_003077084.1| cold shock protein CspG [Escherichia coli O157:H7 str. TW14359] gi|256018751|ref|ZP_05432616.1| cold shock protein CspG [Shigella sp. D9] gi|256023309|ref|ZP_05437174.1| cold shock protein CspG [Escherichia sp. 4_1_40B] gi|260843237|ref|YP_003221015.1| DNA-binding transcriptional regulator CspG [Escherichia coli O103:H2 str. 12009] gi|260854693|ref|YP_003228584.1| DNA-binding transcriptional regulator CspG [Escherichia coli O26:H11 str. 11368] gi|260867198|ref|YP_003233600.1| DNA-binding transcriptional regulator CspG [Escherichia coli O111:H- str. 11128] gi|261227159|ref|ZP_05941440.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261255727|ref|ZP_05948260.1| DNA-binding transcriptional regulator CspG [Escherichia coli O157:H7 str. FRIK966] gi|291281988|ref|YP_003498806.1| Cold shock-like protein cspG [Escherichia coli O55:H7 str. CB9615] gi|293404283|ref|ZP_06648277.1| cold shock-like protein cspG [Escherichia coli FVEC1412] gi|293409367|ref|ZP_06652943.1| conserved hypothetical protein [Escherichia coli B354] gi|293414265|ref|ZP_06656914.1| cold shock protein [Escherichia coli B185] gi|293433284|ref|ZP_06661712.1| cold shock-like protein CspC [Escherichia coli B088] gi|297519754|ref|ZP_06938140.1| cold shock protein CspG [Escherichia coli OP50] gi|298380066|ref|ZP_06989671.1| cold shock-like protein cspG [Escherichia coli FVEC1302] gi|300819431|ref|ZP_07099628.1| transcriptional repressor activity CueR [Escherichia coli MS 107-1] gi|300823951|ref|ZP_07104074.1| transcriptional repressor activity CueR [Escherichia coli MS 119-7] gi|300896362|ref|ZP_07114904.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300902844|ref|ZP_07120792.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300920966|ref|ZP_07137356.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300925325|ref|ZP_07141215.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|300929241|ref|ZP_07144720.1| transcriptional repressor activity CueR [Escherichia coli MS 187-1] gi|300937663|ref|ZP_07152469.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|300949634|ref|ZP_07163620.1| transcriptional repressor activity CueR [Escherichia coli MS 116-1] gi|300957866|ref|ZP_07170042.1| transcriptional repressor activity CueR [Escherichia coli MS 175-1] gi|300978251|ref|ZP_07174199.1| transcriptional repressor activity CueR [Escherichia coli MS 45-1] gi|300982793|ref|ZP_07176303.1| transcriptional repressor activity CueR [Escherichia coli MS 200-1] gi|301022616|ref|ZP_07186487.1| transcriptional repressor activity CueR [Escherichia coli MS 196-1] gi|301023111|ref|ZP_07186918.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|301047756|ref|ZP_07194812.1| transcriptional repressor activity CueR [Escherichia coli MS 185-1] gi|301302393|ref|ZP_07208524.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|301327177|ref|ZP_07220443.1| transcriptional repressor activity CueR [Escherichia coli MS 78-1] gi|301646375|ref|ZP_07246260.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|306812571|ref|ZP_07446764.1| cold shock protein CspG [Escherichia coli NC101] gi|307137622|ref|ZP_07496978.1| cold shock protein CspG [Escherichia coli H736] gi|307311625|ref|ZP_07591265.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|309795021|ref|ZP_07689441.1| transcriptional repressor activity CueR [Escherichia coli MS 145-7] gi|312968952|ref|ZP_07783159.1| cold shock-like protein cspG [Escherichia coli 2362-75] gi|331641521|ref|ZP_08342656.1| conserved domain protein [Escherichia coli H736] gi|331646244|ref|ZP_08347347.1| conserved domain protein [Escherichia coli M605] gi|331652014|ref|ZP_08353033.1| conserved domain protein [Escherichia coli M718] gi|331657050|ref|ZP_08358012.1| conserved domain protein [Escherichia coli TA206] gi|331662397|ref|ZP_08363320.1| conserved domain protein [Escherichia coli TA143] gi|331667381|ref|ZP_08368245.1| conserved domain protein [Escherichia coli TA271] gi|331672524|ref|ZP_08373313.1| conserved domain protein [Escherichia coli TA280] gi|331676780|ref|ZP_08377476.1| conserved domain protein [Escherichia coli H591] gi|331682495|ref|ZP_08383114.1| conserved domain protein [Escherichia coli H299] gi|332279828|ref|ZP_08392241.1| cold shock protein CspG [Shigella sp. D9] gi|71154162|sp|P0A980|CSPG_ECO57 RecName: Full=Cold shock-like protein CspG; Short=CPS-G gi|71154163|sp|P0A979|CSPG_ECOL6 RecName: Full=Cold shock-like protein CspG; Short=CPS-G gi|71154164|sp|P0A978|CSPG_ECOLI RecName: Full=Cold shock-like protein CspG; Short=CPS-G gi|71154165|sp|P0A981|CSPG_SHIFL RecName: Full=Cold shock-like protein CspG; Short=CPS-G gi|26107408|gb|AAN79591.1|AE016758_195 Cold shock-like protein cspG [Escherichia coli CFT073] gi|1468921|dbj|BAA09669.1| cold shock potein CspG [Escherichia coli K-12] gi|2226344|gb|AAB61741.1| CspG [Escherichia coli str. K-12 substr. W3110] gi|2367114|gb|AAC74075.1| cold shock protein homolog, cold-inducible [Escherichia coli str. K-12 substr. MG1655] gi|4062549|dbj|BAA35756.1| DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|13360605|dbj|BAB34568.1| cold shock-like protein CspG [Escherichia coli O157:H7 str. Sakai] gi|73855024|gb|AAZ87731.1| cold shock protein-like protein [Shigella sonnei Ss046] gi|81246098|gb|ABB66806.1| CspG [Shigella boydii Sb227] gi|91071654|gb|ABE06535.1| cold shock-like protein G [Escherichia coli UTI89] gi|110342763|gb|ABG69000.1| cold shock-like protein CspG [Escherichia coli 536] gi|157066188|gb|ABV05443.1| cold shock DNA-binding protein [Escherichia coli HS] gi|157079963|gb|ABV19671.1| cold shock DNA-binding protein [Escherichia coli E24377A] gi|169755539|gb|ACA78238.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|169888483|gb|ACB02190.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|170520909|gb|ACB19087.1| cold shock DNA-binding protein [Escherichia coli SMS-3-5] gi|187427648|gb|ACD06922.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94] gi|187770523|gb|EDU34367.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|188018100|gb|EDU56222.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|188488373|gb|EDU63476.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|189001168|gb|EDU70154.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|189358364|gb|EDU76783.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|189363259|gb|EDU81678.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|189366600|gb|EDU85016.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|189372631|gb|EDU91047.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|189377110|gb|EDU95526.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|190903370|gb|EDV63090.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|190907322|gb|EDV66920.1| cold shock DNA-binding protein [Escherichia coli F11] gi|192926034|gb|EDV80678.1| cold shock DNA-binding protein [Escherichia coli E22] gi|192955916|gb|EDV86385.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194412114|gb|EDX28423.1| cold shock DNA-binding protein [Escherichia coli B171] gi|194419298|gb|EDX35380.1| cold shock DNA-binding protein [Shigella dysenteriae 1012] gi|194423008|gb|EDX39002.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|208726759|gb|EDZ76360.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208731626|gb|EDZ80314.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208738137|gb|EDZ85820.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209159674|gb|ACI37107.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209774128|gb|ACI85376.1| cold shock-like protein CspG [Escherichia coli] gi|209774130|gb|ACI85377.1| cold shock-like protein CspG [Escherichia coli] gi|209774132|gb|ACI85378.1| cold shock-like protein CspG [Escherichia coli] gi|209774134|gb|ACI85379.1| cold shock-like protein CspG [Escherichia coli] gi|209774136|gb|ACI85380.1| cold shock-like protein CspG [Escherichia coli] gi|209911501|dbj|BAG76575.1| cold shock-like protein [Escherichia coli SE11] gi|215264178|emb|CAS08522.1| DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|217320582|gb|EEC29006.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|218351257|emb|CAU96961.1| DNA-binding transcriptional regulator [Escherichia coli 55989] gi|218360345|emb|CAQ97895.1| DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|218364650|emb|CAR02336.1| DNA-binding transcriptional regulator [Escherichia coli S88] gi|218370484|emb|CAR18291.1| DNA-binding transcriptional regulator [Escherichia coli IAI39] gi|218426442|emb|CAR07268.1| DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|218431503|emb|CAR12381.1| DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|222032705|emb|CAP75444.1| Cold shock-like protein cspG [Escherichia coli LF82] gi|226898242|gb|EEH84501.1| cold shock protein CspG [Escherichia sp. 3_2_53FAA] gi|227838810|gb|EEJ49276.1| CspA family cold shock transcriptional regulator [Escherichia coli 83972] gi|238860954|gb|ACR62952.1| DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|242376803|emb|CAQ31516.1| cold shock protein CspG [Escherichia coli BL21(DE3)] gi|253325025|gb|ACT29627.1| cold-shock DNA-binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973003|gb|ACT38674.1| DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253977217|gb|ACT42887.1| DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|254591647|gb|ACT71008.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|257753342|dbj|BAI24844.1| DNA-binding transcriptional regulator CspG [Escherichia coli O26:H11 str. 11368] gi|257758384|dbj|BAI29881.1| DNA-binding transcriptional regulator CspG [Escherichia coli O103:H2 str. 12009] gi|257763554|dbj|BAI35049.1| DNA-binding transcriptional regulator CspG [Escherichia coli O111:H- str. 11128] gi|260449865|gb|ACX40287.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|281178106|dbj|BAI54436.1| cold shock-like protein [Escherichia coli SE15] gi|284920825|emb|CBG33888.1| cold shock-like protein [Escherichia coli 042] gi|290761861|gb|ADD55822.1| Cold shock-like protein cspG [Escherichia coli O55:H7 str. CB9615] gi|291324103|gb|EFE63525.1| cold shock-like protein CspC [Escherichia coli B088] gi|291428869|gb|EFF01894.1| cold shock-like protein cspG [Escherichia coli FVEC1412] gi|291434323|gb|EFF07296.1| cold shock protein [Escherichia coli B185] gi|291469835|gb|EFF12319.1| conserved hypothetical protein [Escherichia coli B354] gi|294493742|gb|ADE92498.1| cold shock DNA-binding protein [Escherichia coli IHE3034] gi|298279764|gb|EFI21272.1| cold shock-like protein cspG [Escherichia coli FVEC1302] gi|299881188|gb|EFI89399.1| transcriptional repressor activity CueR [Escherichia coli MS 196-1] gi|300300365|gb|EFJ56750.1| transcriptional repressor activity CueR [Escherichia coli MS 185-1] gi|300307058|gb|EFJ61578.1| transcriptional repressor activity CueR [Escherichia coli MS 200-1] gi|300315437|gb|EFJ65221.1| transcriptional repressor activity CueR [Escherichia coli MS 175-1] gi|300359773|gb|EFJ75643.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300397232|gb|EFJ80770.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|300405111|gb|EFJ88649.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300409716|gb|EFJ93254.1| transcriptional repressor activity CueR [Escherichia coli MS 45-1] gi|300412086|gb|EFJ95396.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300418547|gb|EFK01858.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|300450965|gb|EFK14585.1| transcriptional repressor activity CueR [Escherichia coli MS 116-1] gi|300457311|gb|EFK20804.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|300462807|gb|EFK26300.1| transcriptional repressor activity CueR [Escherichia coli MS 187-1] gi|300523583|gb|EFK44652.1| transcriptional repressor activity CueR [Escherichia coli MS 119-7] gi|300528027|gb|EFK49089.1| transcriptional repressor activity CueR [Escherichia coli MS 107-1] gi|300842232|gb|EFK69992.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|300846210|gb|EFK73970.1| transcriptional repressor activity CueR [Escherichia coli MS 78-1] gi|301075411|gb|EFK90217.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|305853334|gb|EFM53773.1| cold shock protein CspG [Escherichia coli NC101] gi|306908180|gb|EFN38679.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|307552814|gb|ADN45589.1| cold shock-like protein CspG [Escherichia coli ABU 83972] gi|307627598|gb|ADN71902.1| cold shock protein CspG [Escherichia coli UM146] gi|308121325|gb|EFO58587.1| transcriptional repressor activity CueR [Escherichia coli MS 145-7] gi|309701267|emb|CBJ00567.1| cold shock-like protein [Escherichia coli ETEC H10407] gi|312286354|gb|EFR14267.1| cold shock-like protein cspG [Escherichia coli 2362-75] gi|312945495|gb|ADR26322.1| cold shock protein CspG [Escherichia coli O83:H1 str. NRG 857C] gi|315060274|gb|ADT74601.1| DNA-binding transcriptional regulator [Escherichia coli W] gi|315135640|dbj|BAJ42799.1| cold shock-like protein cspG [Escherichia coli DH1] gi|315258037|gb|EFU38005.1| transcriptional repressor activity CueR [Escherichia coli MS 85-1] gi|315287611|gb|EFU47017.1| transcriptional repressor activity CueR [Escherichia coli MS 110-3] gi|315291158|gb|EFU50521.1| transcriptional repressor activity CueR [Escherichia coli MS 153-1] gi|315296282|gb|EFU55588.1| transcriptional repressor activity CueR [Escherichia coli MS 16-3] gi|320175185|gb|EFW50295.1| Cold shock protein CspG [Shigella dysenteriae CDC 74-1112] gi|320178568|gb|EFW53533.1| Cold shock protein CspG [Shigella boydii ATCC 9905] gi|320187200|gb|EFW61901.1| Cold shock protein CspG [Shigella flexneri CDC 796-83] gi|320192513|gb|EFW67155.1| Cold shock protein CspG [Escherichia coli O157:H7 str. EC1212] gi|320196522|gb|EFW71145.1| Cold shock protein CspG [Escherichia coli WV_060327] gi|320200218|gb|EFW74806.1| Cold shock protein CspG [Escherichia coli EC4100B] gi|320637857|gb|EFX07649.1| cold shock protein CspG [Escherichia coli O157:H7 str. G5101] gi|320642982|gb|EFX12183.1| cold shock protein CspG [Escherichia coli O157:H- str. 493-89] gi|320648439|gb|EFX17094.1| cold shock protein CspG [Escherichia coli O157:H- str. H 2687] gi|320653756|gb|EFX21830.1| cold shock protein CspG [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659598|gb|EFX27161.1| cold shock protein CspG [Escherichia coli O55:H7 str. USDA 5905] gi|320664369|gb|EFX31520.1| cold shock protein CspG [Escherichia coli O157:H7 str. LSU-61] gi|323157489|gb|EFZ43599.1| cold shock-like protein cspG [Escherichia coli EPECa14] gi|323158184|gb|EFZ44278.1| cold shock-like protein cspG [Escherichia coli E128010] gi|323165477|gb|EFZ51264.1| cold shock-like protein cspG [Shigella sonnei 53G] gi|323174903|gb|EFZ60518.1| cold shock-like protein cspG [Escherichia coli LT-68] gi|323175877|gb|EFZ61471.1| cold shock-like protein cspG [Escherichia coli 1180] gi|323185302|gb|EFZ70666.1| cold shock-like protein cspG [Escherichia coli 1357] gi|323379166|gb|ADX51434.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323938094|gb|EGB34356.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1520] gi|323942904|gb|EGB39069.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323947221|gb|EGB43229.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323953315|gb|EGB49181.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H252] gi|323958282|gb|EGB53991.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H263] gi|323962875|gb|EGB58450.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H489] gi|323967237|gb|EGB62661.1| cold-shock DNA-binding domain-containing protein [Escherichia coli M863] gi|323973135|gb|EGB68327.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|323976631|gb|EGB71719.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TW10509] gi|324009920|gb|EGB79139.1| transcriptional repressor activity CueR [Escherichia coli MS 57-2] gi|324013378|gb|EGB82597.1| transcriptional repressor activity CueR [Escherichia coli MS 60-1] gi|324019120|gb|EGB88339.1| transcriptional repressor activity CueR [Escherichia coli MS 117-3] gi|324117147|gb|EGC11055.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1167] gi|326338568|gb|EGD62395.1| Cold shock protein CspG [Escherichia coli O157:H7 str. 1125] gi|326347791|gb|EGD71507.1| Cold shock protein CspG [Escherichia coli O157:H7 str. 1044] gi|327253387|gb|EGE65025.1| cold shock-like protein cspG [Escherichia coli STEC_7v] gi|330910756|gb|EGH39266.1| cold shock protein CspG [Escherichia coli AA86] gi|331038319|gb|EGI10539.1| conserved domain protein [Escherichia coli H736] gi|331044996|gb|EGI17123.1| conserved domain protein [Escherichia coli M605] gi|331050292|gb|EGI22350.1| conserved domain protein [Escherichia coli M718] gi|331055298|gb|EGI27307.1| conserved domain protein [Escherichia coli TA206] gi|331060819|gb|EGI32783.1| conserved domain protein [Escherichia coli TA143] gi|331064966|gb|EGI36861.1| conserved domain protein [Escherichia coli TA271] gi|331070167|gb|EGI41533.1| conserved domain protein [Escherichia coli TA280] gi|331075469|gb|EGI46767.1| conserved domain protein [Escherichia coli H591] gi|331080126|gb|EGI51305.1| conserved domain protein [Escherichia coli H299] gi|332092462|gb|EGI97535.1| cold shock-like protein cspG [Shigella boydii 5216-82] gi|332093343|gb|EGI98401.1| cold shock-like protein cspG [Shigella boydii 3594-74] gi|332095879|gb|EGJ00886.1| cold shock-like protein cspG [Shigella dysenteriae 155-74] gi|332102180|gb|EGJ05526.1| cold shock protein CspG [Shigella sp. D9] gi|332342432|gb|AEE55766.1| cold shock-like protein CspG [Escherichia coli UMNK88] Length = 70 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H +A+ S L E Q V + Q G Sbjct: 6 TGLVKWFNADKGFGFITPD---DGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQ-RG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVVTL 70 >gi|296271250|ref|YP_003653882.1| cold-shock DNA-binding domain-containing protein [Thermobispora bispora DSM 43833] gi|296094037|gb|ADG89989.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM 43833] Length = 66 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW++ +KGYGFI + G DVF+H +A+ G +L +GQ V +D + Sbjct: 1 MAQGTVKWFDAEKGYGFIAVD----GGKDVFVHYTAILMDGFKSLEQGQRVEFDITEGRK 56 Query: 62 NGKYSAE 68 + A Sbjct: 57 GPQAEAV 63 >gi|224824762|ref|ZP_03697869.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] gi|224603255|gb|EEG09431.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ E G+D+F H SA+ + G +L EGQ V++D V N Sbjct: 1 MATGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINTQGFKSLKEGQRVSFDVV-NGP 56 Query: 62 NGKYSAENLK 71 GK A N++ Sbjct: 57 KGKQ-ASNIQ 65 >gi|170690994|ref|ZP_02882160.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] gi|307726662|ref|YP_003909875.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1003] gi|323529135|ref|YP_004231287.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1001] gi|170144243|gb|EDT12405.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] gi|307587187|gb|ADN60584.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003] gi|323386137|gb|ADX58227.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H S V +G +L E Q V+++ Q Sbjct: 1 MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEVQGSGFKSLQENQKVSFEVKQG-P 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|108763112|ref|YP_629869.1| cold-shock protein CspA [Myxococcus xanthus DK 1622] gi|4193390|gb|AAD10033.1| CspA [Myxococcus xanthus] gi|108466992|gb|ABF92177.1| cold-shock protein CspA [Myxococcus xanthus DK 1622] Length = 68 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + + G DVF H +A+ + G L EGQ V ++ + Sbjct: 1 MATGTVKWFNDAKGFGFIAQD---DGGADVFCHHTAIQTDGFRTLAEGQKVEFETRKGPK 57 Query: 62 NGKYSAENLKLV 73 AEN+++V Sbjct: 58 G--LQAENVRVV 67 >gi|126461377|ref|YP_001042491.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126103041|gb|ABN75719.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17029] Length = 68 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G DVF+H +A+ AG+ L +GQ V++D + D Sbjct: 1 MANGTVKWFNATKGFGFIAPAG---GSKDVFVHVTALERAGIRQLDDGQAVSFDL-ERDR 56 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 57 NGRESATNLVL 67 >gi|239617864|ref|YP_002941186.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF 19.5.1] gi|239506695|gb|ACR80182.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF 19.5.1] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KGYGFIT + G D+F+H SA+ G L EGQ V ++ + G Sbjct: 2 KGTVKWFSGKKGYGFIT----MDDGGDIFVHFSAIEMDGYKTLNEGQRVEFEIEEG-PKG 56 Query: 64 KYSAENLKLVP 74 + A ++++ Sbjct: 57 RPQAAKVRVIE 67 >gi|184156018|ref|YP_001844358.1| cold shock protein [Lactobacillus fermentum IFO 3956] gi|260662726|ref|ZP_05863620.1| cold shock protein [Lactobacillus fermentum 28-3-CHN] gi|183227362|dbj|BAG27878.1| cold shock protein [Lactobacillus fermentum IFO 3956] gi|260552807|gb|EEX25806.1| cold shock protein [Lactobacillus fermentum 28-3-CHN] Length = 66 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G+IKW+N +KGYGFI+ E GDDVF+H SA+ G L EGQ VT+D V+ Sbjct: 1 MEKGTIKWFNDEKGYGFISREA----GDDVFVHFSAIQGDGFKTLEEGQSVTFD-VETGD 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGLQAANV 63 >gi|330503289|ref|YP_004380158.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] gi|328917575|gb|AEB58406.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] Length = 95 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G E D+F H SA+ G L GQ V ++ VQ Sbjct: 7 MLSGKVKWFNNAKGYGFILADGRDE---DLFAHYSAIQMDGYKTLKAGQPVRFEIVQGPK 63 Query: 62 NGKYSAENLKLVPKSSN 78 A N+ + + Sbjct: 64 G--LHAVNISAASATQD 78 >gi|326510343|dbj|BAJ87388.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 192 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI+PE + DD+F+H+SA+ + G +L E +V +D + D +G Sbjct: 6 KGTVKWFNVTKGFGFISPE---DGSDDLFVHQSAIKADGYRSLNENDVVEFDVITGD-DG 61 Query: 64 KYSAENLK 71 + A ++ Sbjct: 62 RTKASDVT 69 >gi|254418771|ref|ZP_05032495.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp. BAL3] gi|196184948|gb|EDX79924.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp. BAL3] Length = 70 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KWYNP KGYGFI P+ + G DVF+H SAV ++ + +L EGQ ++Y+ ++ Sbjct: 1 MATGTVKWYNPTKGYGFIAPD---DGGKDVFVHASAVETSSVGSLNEGQKISYEIERDSR 57 Query: 62 NGKYSAENLK 71 +GK SA L Sbjct: 58 SGKESAGRLT 67 >gi|134097136|ref|YP_001102797.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291009809|ref|ZP_06567782.1| cold shock protein [Saccharopolyspora erythraea NRRL 2338] gi|133909759|emb|CAL99871.1| cold-shock DNA-binding domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI T+ G DVF+H SA+ +G L EG V ++ V+ Sbjct: 1 MAVGTVKWFNSEKGYGFIA----TDGGSDVFVHYSAINMSGFRTLAEGDRVEFE-VKAGR 55 Query: 62 NGKYSAENLKLV 73 +G+ A+ ++ + Sbjct: 56 DGRSQADGVRKL 67 >gi|312200656|ref|YP_004020717.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] gi|311231992|gb|ADP84847.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ +G G DVF+H SA+ G +L EGQ V + Q Sbjct: 1 MAQGTVKWFNSEKGFGFISVDG---GGSDVFVHYSAIDMDGYKSLEEGQRVEFQVTQGQK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|256380782|ref|YP_003104442.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] gi|255925085|gb|ACU40596.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI + G DVF+H S + G L E Q V ++ Q Sbjct: 1 MAEGTVKWFNAEKGYGFIAQ---SNGGPDVFVHYSEIQGNGFRTLEENQRVEFEIGQGTK 57 Query: 62 NGKYSAENLK 71 A+N++ Sbjct: 58 G--PQAQNVR 65 >gi|218294620|ref|ZP_03495474.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23] gi|218244528|gb|EED11052.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23] Length = 73 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI EG T DVF+H SA+ + G L EG +VT++ Sbjct: 1 MQKGRVKWFNAEKGYGFIEREGDT----DVFVHFSAINAKGFRTLNEGDIVTFEVEPGKN 56 Query: 62 NGKYSAENLKLVPKS 76 A N+ +V + Sbjct: 57 GKGPQAVNVTVVEPA 71 >gi|85717084|ref|ZP_01048045.1| cold shock protein [Nitrobacter sp. Nb-311A] gi|85696122|gb|EAQ34019.1| cold shock protein [Nitrobacter sp. Nb-311A] Length = 70 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI PE G DVF+H SAV AG +L EG V+Y+ V N GK Sbjct: 7 GTVKWFNGQKGYGFIEPES---GGKDVFVHISAVEKAGFTSLAEGAKVSYEVVMN--RGK 61 Query: 65 YSAENLKL 72 SAENL++ Sbjct: 62 ESAENLRI 69 >gi|152977400|ref|YP_001376917.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026152|gb|ABS23922.1| putative cold-shock DNA-binding domain protein [Bacillus cytotoxicus NVH 391-98] Length = 65 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDD+F+H SA+ G L EGQ V +D V + A G Sbjct: 2 QGRVKWFNAEKGFGFIERE----DGDDIFVHFSAIQQEGYKTLEEGQNVEFDIV-DGARG 56 Query: 64 KYSAENLKL 72 + +KL Sbjct: 57 PQAVNVVKL 65 >gi|170785227|pdb|3CAM|A Chain A, Crystal Structure Of The Cold Shock Domain Protein From Neisseria Meningitidis gi|170785228|pdb|3CAM|B Chain B, Crystal Structure Of The Cold Shock Domain Protein From Neisseria Meningitidis Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V++D G Sbjct: 3 TGIVKWFNDAKGFGFITPD---EGGEDLFAHFSAINXEGFKTLKEGQRVSFDVT-TGPKG 58 Query: 64 KYSAE 68 K +A Sbjct: 59 KQAAN 63 >gi|115375364|ref|ZP_01462627.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|310819145|ref|YP_003951503.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1] gi|115367648|gb|EAU66620.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|309392217|gb|ADO69676.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +G G+D+F H +A+ + G +L EGQ V +D + Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDLFCHHTAIQTQGFRSLQEGQKVEFDVARGPK 57 Query: 62 NGKYSAENLKLV 73 A+N++ V Sbjct: 58 G--LQAQNVRPV 67 >gi|260576175|ref|ZP_05844168.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] gi|259021655|gb|EEW24958.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] Length = 68 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P DVF+H SA+ AG+ L +GQ VT+D ++ Sbjct: 1 MANGTVKWFNATKGFGFIAP---ANGNKDVFVHVSAMERAGIRQLDDGQAVTFDI-ESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESAINLAL 67 >gi|323487951|ref|ZP_08093207.1| cold shock protein [Planococcus donghaensis MPA1U2] gi|323398375|gb|EGA91165.1| cold shock protein [Planococcus donghaensis MPA1U2] Length = 66 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ VT+D Q Sbjct: 1 MEQGKVKWFNSEKGFGFIERE----GGDDVFVHFSAIQSEGFKSLDEGQEVTFDIEQGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--LQATNVQ 64 >gi|323529334|ref|YP_004231486.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1001] gi|323386336|gb|ADX58426.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S + + G L E Q V+++ Q Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRADGFKTLAENQKVSFETKQGPK 57 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 58 G--LQAANIKPL 67 >gi|254389689|ref|ZP_05004914.1| cold shock protein scoF [Streptomyces clavuligerus ATCC 27064] gi|326445343|ref|ZP_08220077.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|197703401|gb|EDY49213.1| cold shock protein scoF [Streptomyces clavuligerus ATCC 27064] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S + S+G L EGQ VT+D Q Sbjct: 1 MASGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSNINSSGYRELQEGQAVTFDITQGQK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENIT 65 >gi|325274567|ref|ZP_08140625.1| cold-shock protein [Pseudomonas sp. TJI-51] gi|324100294|gb|EGB98082.1| cold-shock protein [Pseudomonas sp. TJI-51] Length = 197 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D Sbjct: 131 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 185 Query: 64 KYSAENLKLV 73 AE++ V Sbjct: 186 -LQAEDVVAV 194 >gi|269139554|ref|YP_003296255.1| cold shock protein [Edwardsiella tarda EIB202] gi|267985215|gb|ACY85044.1| cold shock protein [Edwardsiella tarda EIB202] gi|304559442|gb|ADM42106.1| Cold shock protein CspD [Edwardsiella tarda FL6-60] Length = 73 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P GDD+F H +A+ G L GQ V +D Sbjct: 1 METGTVKWFNNAKGFGFICP---ASGGDDIFAHYTAIQMEGYRTLKAGQQVQFDLHIGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|229032524|ref|ZP_04188490.1| Cold shock protein cspB [Bacillus cereus AH1271] gi|229099341|ref|ZP_04230272.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|229105500|ref|ZP_04236141.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|229118352|ref|ZP_04247708.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|228665182|gb|EEL20668.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|228677925|gb|EEL32161.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|228684159|gb|EEL38106.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|228728782|gb|EEL79792.1| Cold shock protein cspB [Bacillus cereus AH1271] Length = 66 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 MQTGKVKWFNGEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|167035202|ref|YP_001670433.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida GB-1] gi|166861690|gb|ABZ00098.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1] Length = 197 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D Sbjct: 131 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 185 Query: 64 KYSAENLKLV 73 AE++ V Sbjct: 186 -LQAEDVVAV 194 >gi|115373612|ref|ZP_01460907.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|310824928|ref|YP_003957286.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1] gi|115369315|gb|EAU68255.1| conserved domain protein [Stigmatella aurantiaca DW4/3-1] gi|309398000|gb|ADO75459.1| Cold-shock protein, CspA family [Stigmatella aurantiaca DW4/3-1] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +G+ G+D+F H SA+ + G +L EGQ V +D + Sbjct: 1 MANGTVKWFNDAKGFGFITQDGA---GEDLFCHHSAIQADGFRSLQEGQKVQFDVARGPK 57 Query: 62 NGKYSAENLKLV 73 A+N++ V Sbjct: 58 G--LQAQNVRPV 67 >gi|119961765|ref|YP_946790.1| cold shock protein [Arthrobacter aurescens TC1] gi|119948624|gb|ABM07535.1| putative cold shock protein [Arthrobacter aurescens TC1] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFIT + ESGDDVF+H SA+ G L EGQ V ++ + Sbjct: 1 MALGTVKWFNAEKGYGFITVD---ESGDDVFVHWSAIQMDGFRALEEGQRVEFELGEGQK 57 Query: 62 NGKYSAENLKL 72 AE +++ Sbjct: 58 G--PQAEGVRV 66 >gi|15675836|ref|NP_270010.1| putative cold shock protein [Streptococcus pyogenes M1 GAS] gi|19746951|ref|NP_608087.1| cold shock protein [Streptococcus pyogenes MGAS8232] gi|21911305|ref|NP_665573.1| putative cold-shock protein [Streptococcus pyogenes MGAS315] gi|61221535|sp|P0A360|CSPA_STRP3 RecName: Full=Major cold shock protein gi|61221536|sp|P0A361|CSPA_STRP8 RecName: Full=Major cold shock protein gi|81175243|sp|P0C0F1|CSPA_STRP1 RecName: Full=Major cold shock protein gi|13623066|gb|AAK34731.1| putative cold shock protein [Streptococcus pyogenes M1 GAS] gi|19749202|gb|AAL98586.1| putative cold shock protein [Streptococcus pyogenes MGAS8232] gi|21905519|gb|AAM80376.1| putative cold-shock protein [Streptococcus pyogenes MGAS315] Length = 67 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI STE+G DVF H SA+ + G L EGQ V +D + Sbjct: 1 MAQGTVKWFNAEKGFGFI----STENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--PQAVNITKL 66 >gi|229096187|ref|ZP_04227160.1| Cold shock-like protein cspB [Bacillus cereus Rock3-29] gi|229115142|ref|ZP_04244552.1| Cold shock-like protein cspB [Bacillus cereus Rock1-3] gi|228668282|gb|EEL23714.1| Cold shock-like protein cspB [Bacillus cereus Rock1-3] gi|228687147|gb|EEL41052.1| Cold shock-like protein cspB [Bacillus cereus Rock3-29] Length = 65 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI +G+ DDVF+H SA+ G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIEMDGA----DDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|34499122|ref|NP_903337.1| cold shock transcription regulator protein [Chromobacterium violaceum ATCC 12472] gi|34104973|gb|AAQ61329.1| cold shock transcription regulator protein [Chromobacterium violaceum ATCC 12472] Length = 67 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E G+D+F H SA+ G L EGQ V+++ V + Sbjct: 1 MAFGTVKWFNDAKGFGFITPD---EGGEDLFAHFSAINMQGFKTLKEGQRVSFEVV-SGP 56 Query: 62 NGKYSAENLK 71 GK A N++ Sbjct: 57 KGKQ-ASNIQ 65 >gi|296268070|ref|YP_003650702.1| cold-shock DNA-binding domain-containing protein [Thermobispora bispora DSM 43833] gi|296090857|gb|ADG86809.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM 43833] Length = 67 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NPDKG+GFI P+G DVF+H SA+ +G NL +GQ V +D V + Sbjct: 1 MAQGTVKWFNPDKGFGFIAPDGGE---PDVFVHFSAIIGSGYRNLEDGQRVEFDIVSSPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--PQASNVR 65 >gi|284045400|ref|YP_003395740.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] gi|283949621|gb|ADB52365.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] Length = 67 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFITP+ + D+F+H SA+ G +L EG V+YD Q Sbjct: 1 MATGTVKWFNDDKGFGFITPDDQS---KDLFVHHSAITGDGFKSLAEGAKVSYDAEQG-P 56 Query: 62 NGKYSAENLKL 72 G +A + Sbjct: 57 KGPNAANVTTI 67 >gi|59714277|ref|YP_207052.1| DNA-binding transcriptional regulator [Vibrio fischeri ES114] gi|197337532|ref|YP_002158749.1| hypothetical protein VFMJ11_A1204 [Vibrio fischeri MJ11] gi|59482525|gb|AAW88164.1| DNA-binding transcriptional regulator [Vibrio fischeri ES114] gi|197314784|gb|ACH64233.1| conserved domain protein [Vibrio fischeri MJ11] Length = 69 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 5 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PQAANVVAL 69 >gi|40363759|dbj|BAD06324.1| putative glycine-rich protein [Triticum aestivum] gi|42391853|dbj|BAD08700.1| cold shock domain protein 2 [Triticum aestivum] Length = 205 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI+PE + +D+F+H+SA+ + G +L E +V ++ + D +G Sbjct: 6 KGTVKWFNVTKGFGFISPE---DGSEDLFVHQSAIKADGYRSLNENDVVEFEVITGD-DG 61 Query: 64 KYSAENLK 71 + A ++ Sbjct: 62 RTKATDVT 69 >gi|146309833|ref|YP_001174907.1| major cold shock protein [Enterobacter sp. 638] gi|261341820|ref|ZP_05969678.1| hypothetical protein ENTCAN_08306 [Enterobacter cancerogenus ATCC 35316] gi|145316709|gb|ABP58856.1| cold-shock DNA-binding protein family [Enterobacter sp. 638] gi|288316195|gb|EFC55133.1| putative cold shock protein [Enterobacter cancerogenus ATCC 35316] Length = 70 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H SA+ + G +L EGQ V++ ++ A G Sbjct: 6 TGLVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNEGYKSLDEGQKVSFTI-ESGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PAAGNVVSL 70 >gi|78043760|ref|YP_359027.1| cold shock protein CspC [Carboxydothermus hydrogenoformans Z-2901] gi|77995875|gb|ABB14774.1| cold shock protein CspC [Carboxydothermus hydrogenoformans Z-2901] Length = 65 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KGYGFI E G DVF+H SA+ G L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFDPKKGYGFIERE----DGGDVFVHFSAIQEKGFKTLEEGQRVEFEIVEG-ARG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|329851859|ref|ZP_08266540.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] gi|328839708|gb|EGF89281.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] Length = 67 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + G+DVF+H SAV AGL L +GQ V+Y+ + Sbjct: 1 MAEGTVKWFNSTKGFGFIQP---SSGGNDVFVHISAVQRAGLQGLADGQKVSYEL--QNE 55 Query: 62 NGKYSAENLKLV 73 GK +A ++KL+ Sbjct: 56 RGKTAAVDIKLL 67 >gi|261251826|ref|ZP_05944400.1| cold shock protein CspA [Vibrio orientalis CIP 102891] gi|260938699|gb|EEX94687.1| cold shock protein CspA [Vibrio orientalis CIP 102891] Length = 70 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFITPE G DVF+H A+ S G L EGQ V+++ Q G Sbjct: 6 TGIVKWFNEEKGFGFITPE---NGGADVFVHFRAITSDGFKTLKEGQQVSFEVEQGQ-KG 61 Query: 64 KYSAENL 70 +A + Sbjct: 62 PQAANVV 68 >gi|167756812|ref|ZP_02428939.1| hypothetical protein CLORAM_02361 [Clostridium ramosum DSM 1402] gi|237734529|ref|ZP_04565010.1| cold shock protein [Mollicutes bacterium D7] gi|167702987|gb|EDS17566.1| hypothetical protein CLORAM_02361 [Clostridium ramosum DSM 1402] gi|229382349|gb|EEO32440.1| cold shock protein [Coprobacillus sp. D7] Length = 66 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFIT + G D+F+H SA+ +G +L EG V++D V++D Sbjct: 1 MNTGTVKWFNSEKGFGFITKDT----GGDLFVHFSAIQGSGFKSLEEGAKVSFDIVESDR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--EQAANVAAL 66 >gi|260904248|ref|ZP_05912570.1| cold-shock DNA-binding domain protein [Brevibacterium linens BL2] Length = 67 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFIT EG+ DVF+H SA+ G L EGQ V ++ + Sbjct: 1 MAQGTVKWFNAEKGYGFITLEGNN---QDVFVHWSAIQMDGYRALEEGQQVEFEVGEGQK 57 Query: 62 NGKYSAENLKLV 73 AE++ L+ Sbjct: 58 G--PQAESVTLL 67 >gi|71737155|ref|YP_275269.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557708|gb|AAZ36919.1| cold shock domain protein CspD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 94 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G + DD+F H S + G L GQ V+++ +Q Sbjct: 3 MLNGKVKWFNNAKGYGFIIKDGKPD--DDLFAHFSTIQMEGYKTLKAGQPVSFEIIQGPK 60 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 61 G--LHAVNIAPL 70 >gi|154251388|ref|YP_001412212.1| cold-shock DNA-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154155338|gb|ABS62555.1| putative cold-shock DNA-binding domain protein [Parvibaculum lavamentivorans DS-1] Length = 68 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI P + G D+F+H SAV AG +L EGQ + Y+ V+ Sbjct: 1 MASGVVKWFNATKGYGFIAP---ADGGKDIFVHISAVERAGQKSLQEGQQIQYELVEG-R 56 Query: 62 NGKYSAENLKL 72 NG++SAENL L Sbjct: 57 NGRFSAENLVL 67 >gi|116326593|ref|YP_796514.1| cold-shock DNA-binding protein family protein [Lactococcus lactis subsp. cremoris SK11] gi|190571792|ref|YP_001966471.1| CSPD [Lactococcus lactis] gi|281491666|ref|YP_003353646.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|76574948|gb|ABA47417.1| cold shock protein D [Lactococcus lactis] gi|108736191|gb|ABG00320.1| CSPD [Lactococcus lactis] gi|116108961|gb|ABJ74083.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp. cremoris SK11] gi|281375384|gb|ADA64897.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] Length = 66 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT +E G D+F H SA+ S G L EGQ V +D + Sbjct: 1 MANGTVKWFNADKGFGFIT----SEEGKDLFAHFSAIQSDGFKTLDEGQKVEFDVEEGQR 56 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 57 G--PQAVNIT 64 >gi|323356496|ref|YP_004222892.1| cold shock proteins [Microbacterium testaceum StLB037] gi|323272867|dbj|BAJ73012.1| cold shock proteins [Microbacterium testaceum StLB037] Length = 67 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI P+ + D+F H SA+ G LTE Q V +D Q Sbjct: 1 MATGTVKWFNSEKGYGFIAPD---DGSADLFAHFSAIQGNGFKELTEAQKVEFDAEQGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--MQAANIRPL 67 >gi|255545420|ref|XP_002513770.1| cold shock protein, putative [Ricinus communis] gi|223546856|gb|EEF48353.1| cold shock protein, putative [Ricinus communis] Length = 184 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 43/66 (65%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KG+GFI P+ + G+D+F+H++++ S G L+EGQ V + V +G+ Sbjct: 9 GTVKWFSAQKGFGFIAPD---DGGEDLFVHQTSIQSDGFRTLSEGQPVEFS-VDFGEDGR 64 Query: 65 YSAENL 70 A ++ Sbjct: 65 TKAVDV 70 >gi|257095586|ref|YP_003169227.1| cold-shock DNA-binding domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048110|gb|ACV37298.1| cold-shock DNA-binding domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 67 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + +D+F H SA+ G L EG+ V++D Q Sbjct: 1 MATGTVKWFNDAKGFGFITPD---DGSEDLFAHFSAITMGGFKTLKEGEKVSFDVTQG-P 56 Query: 62 NGKYSAE 68 GK ++ Sbjct: 57 KGKQASN 63 >gi|119898412|ref|YP_933625.1| cold shock-like protein [Azoarcus sp. BH72] gi|119670825|emb|CAL94738.1| cold shock-like protein [Azoarcus sp. BH72] Length = 69 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KG+GFITPE GDD+F H S + S+G +L E Q V ++ V++ Sbjct: 4 QTGTVKWFNDAKGFGFITPE---NGGDDLFAHFSEIQSSGFKSLAENQRVEFE-VKSGPK 59 Query: 63 GKYSA 67 G +A Sbjct: 60 GLQAA 64 >gi|327440809|dbj|BAK17174.1| cold shock protein [Solibacillus silvestris StLB046] Length = 66 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E G DVF H SA+ G L EGQ V + V++ Sbjct: 1 MTQGTVKWFNSEKGFGFIEVE----GGSDVFAHFSAIQGDGFKTLEEGQKVEFS-VEDGQ 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 RGPQATNIVKL 66 >gi|325261145|ref|ZP_08127883.1| conserved domain protein [Clostridium sp. D5] gi|324032599|gb|EGB93876.1| conserved domain protein [Clostridium sp. D5] Length = 67 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFIT + +G+DVF+H S +AS G +L EGQ V++D + + Sbjct: 1 MNNGTVKWFNAQKGFGFITNDA---NGEDVFVHFSGIASDGYKSLEEGQKVSFDITEGNR 57 Query: 62 NGKYSAENL 70 A N+ Sbjct: 58 G--PQAVNV 64 >gi|295677819|ref|YP_003606343.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|295437662|gb|ADG16832.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] Length = 67 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+G G+D+F H S + G L E Q VT++ V+ Sbjct: 1 METGTVKWFNDAKGFGFITPDG---GGEDLFAHFSEIRVDGFKTLQENQKVTFE-VKTGP 56 Query: 62 NGKYSAENLKLV 73 GK +A N+K V Sbjct: 57 KGKQAA-NIKPV 67 >gi|257485426|ref|ZP_05639467.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625414|ref|ZP_06458368.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649303|ref|ZP_06480646.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. aesculi str. 2250] gi|298487538|ref|ZP_07005580.1| Cold shock-like protein cspD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157922|gb|EFH99000.1| Cold shock-like protein cspD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866849|gb|EGH01558.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889670|gb|EGH22331.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. mori str. 301020] Length = 94 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G + DD+F H S + G L GQ V+++ +Q Sbjct: 3 MLNGKVKWFNNAKGYGFIIEDGKPD--DDLFAHFSTIQMEGYKTLKAGQPVSFEIIQGPK 60 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 61 G--LHAVNIAPL 70 >gi|20808157|ref|NP_623328.1| cold shock proteins [Thermoanaerobacter tengcongensis MB4] gi|20516747|gb|AAM24932.1| Cold shock proteins [Thermoanaerobacter tengcongensis MB4] Length = 66 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V ++ VQ A Sbjct: 1 MVRGKVKWFNAEKGYGFIERE----DGTDVFVHYSAIEGEGFKTLEEGQAVEFEVVQA-A 55 Query: 62 NGKYSAENLKL 72 G +++ KL Sbjct: 56 KGPQASKVRKL 66 >gi|84501623|ref|ZP_00999795.1| cold shock family protein [Oceanicola batsensis HTCC2597] gi|84390244|gb|EAQ02803.1| cold shock family protein [Oceanicola batsensis HTCC2597] Length = 68 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V Y+ Q+ Sbjct: 1 MPVGTVKWFNTTKGYGFIEPE---EGGKDVFVHISAVERSGLTGLADNQKVGYEL-QDGR 56 Query: 62 NGKYSAENLKLV 73 +G+ A +LKL+ Sbjct: 57 DGRKMASDLKLL 68 >gi|290473959|ref|YP_003466833.1| DNA replication inhibitor, nucleic acid-binding domain [Xenorhabdus bovienii SS-2004] gi|289173266|emb|CBJ80041.1| DNA replication inhibitor, nucleic acid-binding domain [Xenorhabdus bovienii SS-2004] Length = 76 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P GDD+F H S + G L GQ V + Q Sbjct: 1 METGTVKWFNNAKGFGFICP---ASGGDDIFAHYSTIQMDGYRTLKAGQKVNFSIHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|54026196|ref|YP_120438.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54017704|dbj|BAD59074.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 68 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI +G G DVF+H SAV+ +G +L EGQ V ++ Q Sbjct: 1 MAQGIVKWFNSEKGFGFIAQDG---GGPDVFVHYSAVSGSGFRSLDEGQRVEFEIGQGQK 57 Query: 62 NGKYSAENLKLV 73 A+++++V Sbjct: 58 G--PQAQDVRVV 67 >gi|115360542|ref|YP_777679.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria AMMD] gi|115285870|gb|ABI91345.1| cold-shock DNA-binding protein family [Burkholderia ambifaria AMMD] Length = 67 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S + G L EGQ V+Y+ +N Sbjct: 1 MDTGTVKWFNDGKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYE-TKNGP 56 Query: 62 NGKYSAE 68 G +A Sbjct: 57 KGLQAAN 63 >gi|99081568|ref|YP_613722.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TM1040] gi|99037848|gb|ABF64460.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040] Length = 68 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE E G DVF+H SAV +GL L + Q V Y+ + Sbjct: 1 MPTGTVKWFNTTKGYGFIEPE---EGGKDVFVHISAVERSGLTGLADNQKVGYELTEG-R 56 Query: 62 NGKYSAENLKLV 73 +G+ A +++ + Sbjct: 57 DGRQMAGDIRPL 68 >gi|16801190|ref|NP_471458.1| hypothetical protein lin2124 [Listeria innocua Clip11262] gi|16804055|ref|NP_465540.1| hypothetical protein lmo2016 [Listeria monocytogenes EGD-e] gi|46908245|ref|YP_014634.1| cold-shock domain-contain protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093186|ref|ZP_00230960.1| cold-shock domain family protein [Listeria monocytogenes str. 4b H7858] gi|47096659|ref|ZP_00234246.1| cold-shock domain family protein [Listeria monocytogenes str. 1/2a F6854] gi|116873452|ref|YP_850233.1| cold shock-like protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217963837|ref|YP_002349515.1| hypothetical protein LMHCC_0544 [Listeria monocytogenes HCC23] gi|224498533|ref|ZP_03666882.1| hypothetical protein LmonF1_02104 [Listeria monocytogenes Finland 1988] gi|224501183|ref|ZP_03669490.1| hypothetical protein LmonFR_01460 [Listeria monocytogenes FSL R2-561] gi|226224613|ref|YP_002758720.1| major cold-shock protein [Listeria monocytogenes Clip81459] gi|254825493|ref|ZP_05230494.1| cold-shock domain family protein [Listeria monocytogenes FSL J1-194] gi|254827097|ref|ZP_05231784.1| cspB [Listeria monocytogenes FSL N3-165] gi|254831742|ref|ZP_05236397.1| major cold-shock protein [Listeria monocytogenes 10403S] gi|254854374|ref|ZP_05243722.1| cold-shock domain family protein [Listeria monocytogenes FSL R2-503] gi|254899286|ref|ZP_05259210.1| major cold-shock protein [Listeria monocytogenes J0161] gi|254912575|ref|ZP_05262587.1| cspB [Listeria monocytogenes J2818] gi|254931816|ref|ZP_05265175.1| cold-shock domain family protein [Listeria monocytogenes HPB2262] gi|254936901|ref|ZP_05268598.1| cold-shock domain family protein [Listeria monocytogenes F6900] gi|255022834|ref|ZP_05294820.1| major cold-shock protein [Listeria monocytogenes FSL J1-208] gi|255029500|ref|ZP_05301451.1| major cold-shock protein [Listeria monocytogenes LO28] gi|255521591|ref|ZP_05388828.1| major cold-shock protein [Listeria monocytogenes FSL J1-175] gi|284802462|ref|YP_003414327.1| hypothetical protein LM5578_2218 [Listeria monocytogenes 08-5578] gi|284995604|ref|YP_003417372.1| hypothetical protein LM5923_2169 [Listeria monocytogenes 08-5923] gi|290892166|ref|ZP_06555162.1| cold-shock domain-containing protein [Listeria monocytogenes FSL J2-071] gi|300763679|ref|ZP_07073676.1| cold-shock domain family protein [Listeria monocytogenes FSL N1-017] gi|61221528|sp|P0A357|CSPB_LISMO RecName: Full=Cold shock-like protein CspLB; Short=CspB gi|61221529|sp|P0A358|CSPB_LISIN RecName: Full=Cold shock-like protein CspLB; Short=CspB gi|12054789|emb|CAC20631.1| cold shock protein (CspLB) [Listeria monocytogenes] gi|16411469|emb|CAD00094.1| cspB [Listeria monocytogenes EGD-e] gi|16414638|emb|CAC97354.1| cspB [Listeria innocua Clip11262] gi|46881516|gb|AAT04811.1| cold-shock domain family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47014981|gb|EAL05927.1| cold-shock domain family protein [Listeria monocytogenes str. 1/2a F6854] gi|47018437|gb|EAL09196.1| cold-shock domain family protein [Listeria monocytogenes str. 4b H7858] gi|116742330|emb|CAK21454.1| cold shock-like protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217333107|gb|ACK38901.1| conserved domain protein [Listeria monocytogenes HCC23] gi|225877075|emb|CAS05786.1| Putative major cold-shock protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599480|gb|EEW12805.1| cspB [Listeria monocytogenes FSL N3-165] gi|258607773|gb|EEW20381.1| cold-shock domain family protein [Listeria monocytogenes FSL R2-503] gi|258609499|gb|EEW22107.1| cold-shock domain family protein [Listeria monocytogenes F6900] gi|284058024|gb|ADB68965.1| hypothetical protein LM5578_2218 [Listeria monocytogenes 08-5578] gi|284061071|gb|ADB72010.1| hypothetical protein LM5923_2169 [Listeria monocytogenes 08-5923] gi|290558289|gb|EFD91807.1| cold-shock domain-containing protein [Listeria monocytogenes FSL J2-071] gi|293583370|gb|EFF95402.1| cold-shock domain family protein [Listeria monocytogenes HPB2262] gi|293590564|gb|EFF98898.1| cspB [Listeria monocytogenes J2818] gi|293594735|gb|EFG02496.1| cold-shock domain family protein [Listeria monocytogenes FSL J1-194] gi|300515415|gb|EFK42465.1| cold-shock domain family protein [Listeria monocytogenes FSL N1-017] gi|307571592|emb|CAR84771.1| cold-shock domain family protein [Listeria monocytogenes L99] gi|313607794|gb|EFR83992.1| putative cold-shock protein [Listeria monocytogenes FSL F2-208] gi|313618008|gb|EFR90155.1| putative cold-shock protein [Listeria innocua FSL S4-378] gi|313623004|gb|EFR93297.1| putative cold-shock protein [Listeria innocua FSL J1-023] gi|328466357|gb|EGF37514.1| hypothetical protein LM1816_12332 [Listeria monocytogenes 1816] gi|332312449|gb|EGJ25544.1| Cold shock-like protein CspD [Listeria monocytogenes str. Scott A] Length = 66 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ V+ Sbjct: 1 MQTGTVKWFNSEKGFGFIEVE----GGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQ- 55 Query: 62 NGKYSAENLKL 72 G + + KL Sbjct: 56 RGPQAEKVTKL 66 >gi|170017900|ref|YP_001728819.1| cold shock protein [Leuconostoc citreum KM20] gi|169804757|gb|ACA83375.1| Cold shock protein [Leuconostoc citreum KM20] Length = 66 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGF+T E +G+DVF H SA+ G L EGQ V ++ V++ Sbjct: 1 MEKGTVKWFNGEKGYGFVTRE----NGEDVFAHFSAIQGDGFKTLEEGQAVEFE-VESSD 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 RGLQAANIVKL 66 >gi|327481503|gb|AEA84813.1| cold-shock DNA-binding protein [Pseudomonas stutzeri DSM 4166] Length = 177 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 6/75 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI+ + SGDDVF+H A+ G L EGQ V + + D Sbjct: 108 RESGTVKWFNTSKGFGFISRD----SGDDVFVHFRAIRGEGHRILVEGQRVEFTIMMRDK 163 Query: 62 NGKYSAENLKLVPKS 76 AE++ V + Sbjct: 164 G--LQAEDVVTVDSA 176 >gi|311029540|ref|ZP_07707630.1| cold shock protein [Bacillus sp. m3-13] Length = 65 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ A Sbjct: 1 MLQGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQEVSFEIVEG-A 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|319948998|ref|ZP_08023098.1| cold-shock protein [Dietzia cinnamea P4] gi|319437339|gb|EFV92359.1| cold-shock protein [Dietzia cinnamea P4] Length = 67 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI PE + D+F+H S++ G +L E Q V ++ + Sbjct: 1 MAQGTVKWFNAEKGYGFIAPE---DGSADLFVHYSSIEGTGFKSLEENQRVEFEVGEGQK 57 Query: 62 NGKYS 66 + Sbjct: 58 GPQAQ 62 >gi|226939860|ref|YP_002794933.1| CspA [Laribacter hongkongensis HLHK9] gi|226714786|gb|ACO73924.1| CspA [Laribacter hongkongensis HLHK9] Length = 67 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI+P+ E G+D+F H SA+ S G L EGQ V++D Sbjct: 1 MATGIVKWFNESKGFGFISPD---EGGEDLFAHFSAIQSKGFKTLAEGQRVSFDVTTGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|186477475|ref|YP_001858945.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184193934|gb|ACC71899.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 67 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H S + G L E Q VTYD V+ Sbjct: 1 METGTVKWFNDAKGFGFITPDA---GGEDLFAHFSEIRVEGFKTLQENQKVTYD-VKTGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|304407201|ref|ZP_07388854.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] gi|304343642|gb|EFM09483.1| cold-shock DNA-binding domain protein [Paenibacillus curdlanolyticus YK9] Length = 66 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI+ E G+DVF+H SA+ G +L EGQ V ++ VQ + Sbjct: 1 MVTGTVKWFNAEKGFGFISVE----GGEDVFVHFSAIQGDGYKSLDEGQSVEFNIVQGNR 56 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 57 G--AQAENV 63 >gi|84514337|ref|ZP_01001701.1| cold shock family protein [Loktanella vestfoldensis SKA53] gi|84511388|gb|EAQ07841.1| cold shock family protein [Loktanella vestfoldensis SKA53] Length = 80 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PEG DVF+H SAV +GL L + Q V +D + Sbjct: 12 MASGTVKWFNTTKGYGFIAPEG---GSKDVFVHISAVERSGLTGLKDNQKVNFDI-EASR 67 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 68 DGRESAVNLTL 78 >gi|30062528|ref|NP_836699.1| cold shock protein CspG [Shigella flexneri 2a str. 2457T] gi|56479790|ref|NP_706912.2| cold shock protein CspG [Shigella flexneri 2a str. 301] gi|110805005|ref|YP_688525.1| cold shock protein CspG [Shigella flexneri 5 str. 8401] gi|312971120|ref|ZP_07785299.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|30040774|gb|AAP16505.1| putative cold shock protein [Shigella flexneri 2a str. 2457T] gi|56383341|gb|AAN42619.2| putative cold shock protein [Shigella flexneri 2a str. 301] gi|110614553|gb|ABF03220.1| cold shock-like protein CspG [Shigella flexneri 5 str. 8401] gi|281600354|gb|ADA73338.1| Cold shock-like protein cspG [Shigella flexneri 2002017] gi|310336881|gb|EFQ02048.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|313650757|gb|EFS15158.1| cold shock-like protein cspG [Shigella flexneri 2a str. 2457T] gi|315619077|gb|EFU99658.1| cold shock-like protein cspG [Escherichia coli 3431] gi|323190646|gb|EFZ75916.1| cold shock-like protein cspG [Escherichia coli RN587/1] gi|332762777|gb|EGJ93040.1| cold shock-like protein cspG [Shigella flexneri K-671] gi|332767786|gb|EGJ97977.1| cold shock protein CspG [Shigella flexneri 2930-71] gi|333008663|gb|EGK28129.1| cold shock-like protein cspG [Shigella flexneri K-272] gi|333020008|gb|EGK39279.1| cold shock-like protein cspG [Shigella flexneri K-304] Length = 66 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H +A+ S L E Q V + Q G Sbjct: 2 TGLVKWFNADKGFGFITPD---DGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQ-RG 57 Query: 64 KYSAENLKL 72 +A + L Sbjct: 58 PAAANVVTL 66 >gi|296118095|ref|ZP_06836677.1| putative cold shock protein [Corynebacterium ammoniagenes DSM 20306] gi|295968981|gb|EFG82224.1| putative cold shock protein [Corynebacterium ammoniagenes DSM 20306] Length = 67 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H S + G L E Q V+++ + Sbjct: 1 MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQQVSFEIGEGQK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--PQATNVNAL 67 >gi|300722953|ref|YP_003712249.1| Qin prophage; cold shock protein [Xenorhabdus nematophila ATCC 19061] gi|297629466|emb|CBJ90067.1| Qin prophage; cold shock protein [Xenorhabdus nematophila ATCC 19061] Length = 71 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P ++ DVF+H SA+ S L+EGQ V + +N A G Sbjct: 6 TGLVKWFNADKGFGFISP---SDGSKDVFVHFSAIQSNDYRTLSEGQKVEFTI-ENGAKG 61 Query: 64 KYSAENL 70 +A + Sbjct: 62 PAAANVV 68 >gi|209517087|ref|ZP_03265934.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295677385|ref|YP_003605909.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|209502480|gb|EEA02489.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|295437228|gb|ADG16398.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] Length = 67 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S + G L E Q V+++ Q Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAENQKVSFETKQGPK 57 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 58 G--LQAANIKPL 67 >gi|58582344|ref|YP_201360.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426938|gb|AAW75975.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 121 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 58 NGIVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQKG- 112 Query: 64 KYSAENLKLV 73 A+ ++ V Sbjct: 113 -MQADQVQAV 121 >gi|308049700|ref|YP_003913266.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM 9799] gi|307631890|gb|ADN76192.1| cold-shock DNA-binding protein family [Ferrimonas balearica DSM 9799] Length = 69 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI PEG G+DVF H S + G L GQ+V ++ Sbjct: 1 MAQGTVKWFNNAKGFGFICPEG---GGEDVFAHYSTIEMEGYRTLKAGQVVEFEMEAGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 58 G--MHASNIQPV 67 >gi|295397227|ref|ZP_06807326.1| cold shock protein CspA [Aerococcus viridans ATCC 11563] gi|294974536|gb|EFG50264.1| cold shock protein CspA [Aerococcus viridans ATCC 11563] Length = 66 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI DDVF+H +A+ G +L EGQ V+++ ++ Sbjct: 1 MEQGKVKWFNAEKGFGFIE----RSGADDVFVHFTAIQGDGFKSLEEGQEVSFEI-EDGN 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGPQAANVVK 65 >gi|269124786|ref|YP_003298156.1| cold-shock DNA-binding domain-containing protein [Thermomonospora curvata DSM 43183] gi|268309744|gb|ACY96118.1| cold-shock DNA-binding domain protein [Thermomonospora curvata DSM 43183] Length = 67 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NPDKG+GFI+P+ + D+F+H SA+ G L E Q V Y VQ Sbjct: 1 MAQGTVKWFNPDKGFGFISPD---DGSADIFVHHSAIQMRGFRTLVEEQRVEYTAVQGPK 57 Query: 62 NGKYSAENLKLV 73 A+ ++ + Sbjct: 58 G--LQADVVRAL 67 >gi|189426235|ref|YP_001953412.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ] gi|189422494|gb|ACD96892.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ] Length = 67 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI E G+DVF H SA+ S G +L EG+ V++D VQ Sbjct: 1 MAQGKVKWFNDTKGFGFIEQE----GGEDVFAHFSAIQSEGFKSLAEGESVSFDIVQG-P 55 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 56 KGLQAANIVKL 66 >gi|297624347|ref|YP_003705781.1| cold-shock DNA-binding domain-containing protein [Truepera radiovictrix DSM 17093] gi|297165527|gb|ADI15238.1| cold-shock DNA-binding domain protein [Truepera radiovictrix DSM 17093] Length = 84 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ +KG+GFI +G G DVF H SA+ ++G +L EG V ++ Q Sbjct: 1 MATGRVKWFSNEKGFGFIEQDG---GGADVFCHFSAINASGYRSLNEGDEVEFEVEQGQK 57 Query: 62 NGKYSAENLKLV 73 A+N++++ Sbjct: 58 G--LQAKNVEVI 67 >gi|289209718|ref|YP_003461784.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. K90mix] gi|288945349|gb|ADC73048.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. K90mix] Length = 67 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N KG+GFITP+ + G DVF+H SA++ +G L EGQ V+++ Q A Sbjct: 1 MNTGVVKWFNESKGFGFITPD---DGGKDVFVHFSAISGSGFKTLAEGQKVSFEI-QETA 56 Query: 62 NGKYSAENLKL 72 G + E L Sbjct: 57 KGLAAGEVTAL 67 >gi|139474525|ref|YP_001129241.1| cold shock protein [Streptococcus pyogenes str. Manfredo] gi|134272772|emb|CAM31047.1| cold shock protein [Streptococcus pyogenes str. Manfredo] Length = 67 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ TE+G D+F H SA+ + G L EGQ V +D + Sbjct: 1 MAQGTVKWFNAEKGFGFIS----TENGQDIFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--PQAVNITKL 66 >gi|317492161|ref|ZP_07950591.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919866|gb|EFV41195.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 69 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFITP + DVF+H SA+ S G L EGQ V + +Q+ Sbjct: 4 KTGHVKWFNESKGFGFITP---ADGSKDVFVHFSAIKSDGFKTLAEGQQVEF-AIQDSPR 59 Query: 63 GKYSAENLKL 72 G +A+ + L Sbjct: 60 GPSAADVIAL 69 >gi|239995438|ref|ZP_04715962.1| putative Cold shock-like protein [Alteromonas macleodii ATCC 27126] Length = 70 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFITPE G DVF+H ++AS G L EGQ V+++ Q G Sbjct: 6 NGTVKWFNEEKGFGFITPEA---GGKDVFVHFRSIASDGFKTLKEGQEVSFEVEQGQ-KG 61 Query: 64 KYSAENL 70 +A + Sbjct: 62 PQAANVV 68 >gi|90019067|gb|ABD84187.1| unknown [Yersinia sp. MH-1] Length = 77 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP + G DVF+H SA+ S L EGQ V + +N A G Sbjct: 13 TGLVKWFDAGKGFGFITP---ADGGKDVFVHFSAIQSNDFKTLDEGQRVEFSI-ENGAKG 68 Query: 64 KYSAENLKL 72 +A + L Sbjct: 69 PSAANVVAL 77 >gi|297584713|ref|YP_003700493.1| cold-shock DNA-binding domain-containing protein [Bacillus selenitireducens MLS10] gi|297143170|gb|ADH99927.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens MLS10] Length = 65 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG DDVF+H SA+ G L EGQ VT+D Q Sbjct: 1 MTQGTVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVTFDIEQGQ- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|118595187|ref|ZP_01552534.1| Possible Cold-shock DNA-binding domain protein [Methylophilales bacterium HTCC2181] gi|118440965|gb|EAV47592.1| Possible Cold-shock DNA-binding domain protein [Methylophilales bacterium HTCC2181] Length = 68 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H SA+ G +L EG V+++ + Sbjct: 1 MATGTVKWFNDSKGFGFITPD---DGGDDLFAHFSAIVDDGYKSLKEGARVSFEVT-DGP 56 Query: 62 NGKYSAENLK 71 GK A N++ Sbjct: 57 KGKQ-ASNIQ 65 >gi|28377809|ref|NP_784701.1| cold shock protein CspC [Lactobacillus plantarum WCFS1] gi|254555993|ref|YP_003062410.1| cold shock protein CspC [Lactobacillus plantarum JDM1] gi|300767794|ref|ZP_07077704.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179985|ref|YP_003924113.1| cold shock protein CspC [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270642|emb|CAD63548.1| cold shock protein CspC [Lactobacillus plantarum WCFS1] gi|254044920|gb|ACT61713.1| cold shock protein CspC [Lactobacillus plantarum JDM1] gi|300494779|gb|EFK29937.1| cold shock protein CspA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045476|gb|ADN98019.1| cold shock protein CspC [Lactobacillus plantarum subsp. plantarum ST-III] Length = 66 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT E +G DVF+H SA+ G +L EGQ V +D ++D Sbjct: 1 MEHGTVKWFNADKGFGFITRE----NGSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESDR 56 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 57 G--PQAVNVT 64 >gi|118578996|ref|YP_900246.1| cold-shock DNA-binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501706|gb|ABK98188.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM 2379] Length = 67 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI E G+DVF+H SA+ G +L+EG VT+D Q Sbjct: 1 MAKGKVKWFNDTKGFGFIEQE----GGEDVFVHFSAIQGEGFKSLSEGDEVTFDITQG-P 55 Query: 62 NGKYSAENLKL 72 G SA +K+ Sbjct: 56 KGLQSANVVKV 66 >gi|237732149|ref|ZP_04562630.1| cspB [Citrobacter sp. 30_2] gi|226907688|gb|EEH93606.1| cspB [Citrobacter sp. 30_2] Length = 97 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+NP+KG+GFITP + DVF+H SA+ S L E Q V + Q G Sbjct: 33 TGLVKWFNPEKGFGFITP---ADGSKDVFVHFSAIQSNEFKTLNENQKVEFGVEQG-PKG 88 Query: 64 KYSAENLKL 72 + + L Sbjct: 89 PSAINVVAL 97 >gi|160894675|ref|ZP_02075450.1| hypothetical protein CLOL250_02226 [Clostridium sp. L2-50] gi|156863609|gb|EDO57040.1| hypothetical protein CLOL250_02226 [Clostridium sp. L2-50] Length = 66 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI S E+GDD+F+H SA+ +G L EG V ++ ++ + Sbjct: 1 MKTGTVKWFNAKKGYGFI----SDENGDDIFVHFSALNMSGFKVLEEGDKVEFEVIEGE- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 KGPQAANVTKL 66 >gi|77920396|ref|YP_358211.1| cold shock proteins [Pelobacter carbinolicus DSM 2380] gi|77546479|gb|ABA90041.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus DSM 2380] Length = 85 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + +G DVF+H SA+ G +L EG V++D V + Sbjct: 20 MAEGTVKWFNDAKGFGFIEQD----NGPDVFVHFSAIQGEGFKSLVEGDRVSFDVV-DGP 74 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 75 KGPQAANVQK 84 >gi|319440471|ref|ZP_07989627.1| hypothetical protein CvarD4_01780 [Corynebacterium variabile DSM 44702] Length = 67 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI P + G DVF+H S + G L E Q V ++ + A Sbjct: 1 MAQGTVKWFNAEKGYGFIAP---NDGGADVFVHYSEIQGNGFRTLEENQQVEFEIGEG-A 56 Query: 62 NGKYSAENLKL 72 G + + L Sbjct: 57 KGPQAQQVTAL 67 >gi|317493995|ref|ZP_07952411.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917768|gb|EFV39111.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 70 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + DVF+H SA+ S +L EGQ V + +N A G Sbjct: 6 TGLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSDSYKSLDEGQSVEFTI-ENGAKG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVVAL 70 >gi|310767159|gb|ADP12109.1| cold shock-like protein [Erwinia sp. Ejp617] Length = 75 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D Q Sbjct: 1 MMTGTVKWFNNAKGFGFICPVG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|145588771|ref|YP_001155368.1| cold-shock DNA-binding domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047177|gb|ABP33804.1| cold-shock DNA-binding protein family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 67 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITPE G+D+F H SA+ S G +L EGQ VT+D Sbjct: 1 MANGIVKWFNDAKGFGFITPEL---GGEDLFAHFSAINSNGFKSLAEGQKVTFDIT-TGP 56 Query: 62 NGKYSAENLKLV 73 GK A N++ V Sbjct: 57 KGKL-ASNIQPV 67 >gi|187921538|ref|YP_001890570.1| cold-shock DNA-binding domain-containing protein [Burkholderia phytofirmans PsJN] gi|296158545|ref|ZP_06841375.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|187719976|gb|ACD21199.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|295891113|gb|EFG70901.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] Length = 67 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H S V +G +L E Q VT++ Q Sbjct: 1 MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEVQGSGFKSLQENQKVTFEVKQG-P 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|24374170|ref|NP_718213.1| stress response protein CspD [Shewanella oneidensis MR-1] gi|113969986|ref|YP_733779.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-4] gi|114047221|ref|YP_737771.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-7] gi|117920198|ref|YP_869390.1| cold-shock DNA-binding protein family protein [Shewanella sp. ANA-3] gi|146293325|ref|YP_001183749.1| cold-shock DNA-binding domain-containing protein [Shewanella putrefaciens CN-32] gi|24348677|gb|AAN55657.1|AE015704_8 stress response protein CspD [Shewanella oneidensis MR-1] gi|113884670|gb|ABI38722.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4] gi|113888663|gb|ABI42714.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7] gi|117612530|gb|ABK47984.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3] gi|145565015|gb|ABP75950.1| cold-shock DNA-binding protein family [Shewanella putrefaciens CN-32] gi|319426625|gb|ADV54699.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens 200] Length = 68 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G+DVF H S + G L GQ V ++ Q Sbjct: 1 MASGTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEQGPK 57 Query: 62 NGKYSA 67 SA Sbjct: 58 GMHASA 63 >gi|30019750|ref|NP_831381.1| cold shock protein [Bacillus cereus ATCC 14579] gi|206970763|ref|ZP_03231715.1| cold shock protein CspB [Bacillus cereus AH1134] gi|218233734|ref|YP_002366385.1| cold shock protein CspB [Bacillus cereus B4264] gi|218896633|ref|YP_002445044.1| cold shock protein CspB [Bacillus cereus G9842] gi|228900283|ref|ZP_04064513.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222] gi|228907338|ref|ZP_04071196.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 200] gi|228920413|ref|ZP_04083758.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228938814|ref|ZP_04101414.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952082|ref|ZP_04114177.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957979|ref|ZP_04119716.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964684|ref|ZP_04125791.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228971695|ref|ZP_04132316.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978304|ref|ZP_04138681.1| Cold shock-like protein cspB [Bacillus thuringiensis Bt407] gi|229043455|ref|ZP_04191165.1| Cold shock-like protein cspB [Bacillus cereus AH676] gi|229069255|ref|ZP_04202545.1| Cold shock-like protein cspB [Bacillus cereus F65185] gi|229078885|ref|ZP_04211437.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2] gi|229109158|ref|ZP_04238757.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15] gi|229127029|ref|ZP_04256028.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4] gi|229144315|ref|ZP_04272721.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST24] gi|229149903|ref|ZP_04278131.1| Cold shock-like protein cspB [Bacillus cereus m1550] gi|229172343|ref|ZP_04299903.1| Cold shock-like protein cspB [Bacillus cereus MM3] gi|229189784|ref|ZP_04316797.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876] gi|296502284|ref|YP_003663984.1| cold shock protein [Bacillus thuringiensis BMB171] gi|29895295|gb|AAP08582.1| Cold shock protein [Bacillus cereus ATCC 14579] gi|206734399|gb|EDZ51569.1| cold shock protein CspB [Bacillus cereus AH1134] gi|218161691|gb|ACK61683.1| cold shock protein CspB [Bacillus cereus B4264] gi|218544906|gb|ACK97300.1| cold shock protein CspB [Bacillus cereus G9842] gi|228593698|gb|EEK51504.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876] gi|228611139|gb|EEK68401.1| Cold shock-like protein cspB [Bacillus cereus MM3] gi|228633584|gb|EEK90185.1| Cold shock-like protein cspB [Bacillus cereus m1550] gi|228639102|gb|EEK95526.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST24] gi|228656382|gb|EEL12221.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4] gi|228674168|gb|EEL29413.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15] gi|228704299|gb|EEL56733.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2] gi|228713742|gb|EEL65627.1| Cold shock-like protein cspB [Bacillus cereus F65185] gi|228725833|gb|EEL77080.1| Cold shock-like protein cspB [Bacillus cereus AH676] gi|228781321|gb|EEM29522.1| Cold shock-like protein cspB [Bacillus thuringiensis Bt407] gi|228787785|gb|EEM35743.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794934|gb|EEM42433.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228801686|gb|EEM48566.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807614|gb|EEM54138.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820663|gb|EEM66688.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228839043|gb|EEM84339.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852199|gb|EEM96995.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 200] gi|228859318|gb|EEN03748.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222] gi|296323336|gb|ADH06264.1| cold shock protein [Bacillus thuringiensis BMB171] gi|326939318|gb|AEA15214.1| cold shock protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 65 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|127512493|ref|YP_001093690.1| cold-shock DNA-binding domain-containing protein [Shewanella loihica PV-4] gi|126637788|gb|ABO23431.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4] Length = 68 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G+DVF H S + G L GQ V ++ Q Sbjct: 1 MANGTVKWFNNAKGFGFICPEA---GGEDVFAHYSTIEMEGYRTLKAGQSVQFEVEQGPK 57 Query: 62 NGKYSA 67 SA Sbjct: 58 GMHASA 63 >gi|108761073|ref|YP_631772.1| cold-shock protein CspD [Myxococcus xanthus DK 1622] gi|4193396|gb|AAD10036.1| CspD [Myxococcus xanthus] gi|108464953|gb|ABF90138.1| cold-shock protein CspD [Myxococcus xanthus DK 1622] Length = 67 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+T +G G+DVF H +A+ G L EGQ V ++ + Sbjct: 1 MATGTVKWFNDAKGFGFLTQDG---GGEDVFCHHTAINMDGFRTLQEGQKVEFEVTRGPK 57 Query: 62 NGKYSAENLK 71 A+N++ Sbjct: 58 G--LQAQNVR 65 >gi|322832164|ref|YP_004212191.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|321167365|gb|ADW73064.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] Length = 73 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G+D+F H S + G L GQ V +D + Sbjct: 1 MQTGTVKWFNNAKGFGFICP---QNGGEDIFAHYSTIQMEGYRTLKAGQQVNFDVHEGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|311030382|ref|ZP_07708472.1| cold shock protein [Bacillus sp. m3-13] Length = 66 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E GDDVF+H SA+ G +L EG+ V+++ V+ + Sbjct: 1 MQNGKVKWFNNEKGFGFIEVE----GGDDVFVHFSAITGDGFKSLEEGEEVSFEVVEGN- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAANVTKL 66 >gi|284007908|emb|CBA73854.1| cold shock-like protein [Arsenophonus nasoniae] Length = 70 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G+D+F H S++ G L GQ V + + Sbjct: 1 METGTVKWFNNAKGFGFICPE---NGGEDIFAHYSSIQMEGYRTLKAGQKVNFSSTKGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|256751272|ref|ZP_05492152.1| cold-shock DNA-binding domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|289578721|ref|YP_003477348.1| cold-shock DNA-binding domain protein [Thermoanaerobacter italicus Ab9] gi|297544955|ref|YP_003677257.1| cold-shock DNA-binding domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|307266235|ref|ZP_07547777.1| cold-shock DNA-binding domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326390559|ref|ZP_08212115.1| cold-shock DNA-binding domain protein [Thermoanaerobacter ethanolicus JW 200] gi|256749827|gb|EEU62851.1| cold-shock DNA-binding domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|289528434|gb|ADD02786.1| cold-shock DNA-binding domain protein [Thermoanaerobacter italicus Ab9] gi|296842730|gb|ADH61246.1| cold-shock DNA-binding domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|306918765|gb|EFN48997.1| cold-shock DNA-binding domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325993384|gb|EGD51820.1| cold-shock DNA-binding domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 67 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V ++ V+ A Sbjct: 1 MVRGKVKWFNAEKGYGFIERE----DGTDVFVHYSAIEGDGFKTLEEGQKVEFEVVEA-A 55 Query: 62 NGKYSAENLKL 72 G +++ K+ Sbjct: 56 KGPQASKVRKV 66 >gi|186473959|ref|YP_001861301.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184196291|gb|ACC74255.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 67 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H S + + G +L E Q V+++ V+ Sbjct: 1 MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIRTEGFKSLQENQKVSFE-VKMGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|117619345|ref|YP_858396.1| hypothetical protein AHA_3962 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560752|gb|ABK37700.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 70 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N +KG+GFI+P T+ DVF+H SA+ + G L EGQ V + Q G Sbjct: 6 TGTVKFFNAEKGFGFISP---TDGSKDVFVHFSAIQTPGFKTLDEGQRVEFTIEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVVAL 70 >gi|54022330|ref|YP_116572.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54013838|dbj|BAD55208.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 68 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H S + +G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGSGFRTLEENQKVEFEVGQGTK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|312200428|ref|YP_004020489.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] gi|311231764|gb|ADP84619.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] Length = 67 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ +G G DVF+H SA+ + G +L EGQ V ++ VQ Sbjct: 1 MAQGTVKWFNAEKGFGFISVDG---GGPDVFVHFSAILTDGYKSLDEGQSVQFEIVQGQK 57 Query: 62 NGKYSAENLKLV 73 A+ ++ V Sbjct: 58 G--PQADKVQPV 67 >gi|320012608|gb|ADW07458.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] Length = 67 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H SA+ + G L EGQ VT+D Q Sbjct: 1 MASGTVKWFNAEKGFGFIQQDG---GGPDVFAHYSAINATGFRELQEGQAVTFDVTQGQK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENIT 65 >gi|255264493|ref|ZP_05343835.1| conserved domain protein [Thalassiobium sp. R2A62] gi|255106828|gb|EET49502.1| conserved domain protein [Thalassiobium sp. R2A62] Length = 69 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+G DVF+H SAV +GL L + Q V +D + Sbjct: 1 MATGTVKWFNTTKGYGFIAPDG---GSKDVFVHISAVERSGLTGLADNQKVNFDI-EAGR 56 Query: 62 NGKYSAENLK 71 +G+ SA N+ Sbjct: 57 DGRESAINIT 66 >gi|253999063|ref|YP_003051126.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. SIP3-4] gi|313201165|ref|YP_004039823.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. MP688] gi|253985742|gb|ACT50599.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4] gi|312440481|gb|ADQ84587.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688] Length = 67 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H SA+AS G +L E + V++D Sbjct: 1 MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSAIASNGFKSLKENERVSFDITTGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQASNIQ 65 >gi|145225805|ref|YP_001136483.1| cold-shock DNA-binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315442490|ref|YP_004075369.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] gi|145218291|gb|ABP47695.1| cold-shock DNA-binding protein family [Mycobacterium gilvum PYR-GCK] gi|315260793|gb|ADT97534.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] Length = 67 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 3/68 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+ + DVF+H S ++ +G +L E Q V ++ Q + Sbjct: 1 MAQGTVKWFNGEKGFGFIAPD---DGSKDVFVHYSEISGSGYRSLEENQRVEFEVEQGNK 57 Query: 62 NGKYSAEN 69 + N Sbjct: 58 GPQAVRVN 65 >gi|226358070|ref|YP_002787809.1| Cold shock protein [Deinococcus deserti VCD115] gi|226319713|gb|ACO47707.1| putative Cold shock protein [Deinococcus deserti VCD115] Length = 87 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI T G DVF H SA++ +G L EG V ++ + Sbjct: 1 MPAGKVKWFNAEKGFGFIE----TPGGPDVFAHFSAISGSGFKKLNEGDEVEFELEEGQR 56 Query: 62 NGKYSAENLKL 72 A+N+ + Sbjct: 57 GKGPQAKNIVV 67 >gi|94498414|ref|ZP_01304972.1| cold-shock DNA-binding domain protein [Sphingomonas sp. SKA58] gi|94422169|gb|EAT07212.1| cold-shock DNA-binding domain protein [Sphingomonas sp. SKA58] Length = 70 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKGYGFI P+ + D F+H +AV AGL L E V+YD Q D Sbjct: 1 MAITGTVKFFNADKGYGFIAPD---DGTPDAFVHITAVERAGLATLREKDRVSYDLEQ-D 56 Query: 61 ANGKYSAENLK 71 GK +A NL Sbjct: 57 RRGKMAAVNLT 67 >gi|1864167|gb|AAB48629.1| major cold-shock protein homolog CspB [Listeria monocytogenes] Length = 66 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E GDD+F+H SA+ G L EGQ V ++ V+ Sbjct: 1 MQTGTVKWFNSEKGFGFIEVE----GGDDIFVHFSAIEGEGFKTLDEGQSVEFEIVEGQ- 55 Query: 62 NGKYSAENLKL 72 G + + KL Sbjct: 56 RGPQAEKVTKL 66 >gi|83942901|ref|ZP_00955361.1| cold shock family protein [Sulfitobacter sp. EE-36] gi|83954075|ref|ZP_00962795.1| cold shock family protein [Sulfitobacter sp. NAS-14.1] gi|83841112|gb|EAP80282.1| cold shock family protein [Sulfitobacter sp. NAS-14.1] gi|83845909|gb|EAP83786.1| cold shock family protein [Sulfitobacter sp. EE-36] Length = 68 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PEG G DVF+H SAV +GL L + Q V+++ + Sbjct: 1 MPTGTVKWFNTTKGYGFIAPEG---GGSDVFVHISAVERSGLTGLADEQKVSFEMSEG-R 56 Query: 62 NGKYSAENLKLV 73 +G+ A +L+L+ Sbjct: 57 DGRQMATDLELL 68 >gi|323467067|gb|ADX70754.1| cold shock-like protein, CspA family [Lactobacillus helveticus H10] Length = 66 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT G DVF+H S++ + G +L EGQ V+YD Q Sbjct: 1 MQNGTVKWFNADKGFGFIT----GSDGTDVFVHFSSIKTDGFKSLEEGQKVSYDVEQG-R 55 Query: 62 NGKYSAENL 70 G + + Sbjct: 56 RGPQATNVV 64 >gi|229160646|ref|ZP_04288640.1| Cold shock-like protein cspB [Bacillus cereus R309803] gi|228622845|gb|EEK79677.1| Cold shock-like protein cspB [Bacillus cereus R309803] Length = 65 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIE----IEGADDVFVHFSAIQGDGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|224370369|ref|YP_002604533.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2] gi|223693086|gb|ACN16369.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2] Length = 86 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E +G+D+F+H S++ + G +L EG VT+D Q Sbjct: 21 MANGTVKWFNDSKGFGFIEQE----NGEDLFVHHSSINATGFKSLNEGDKVTFDVEQGQK 76 Query: 62 NGKYSAENLKLV 73 +A N+ +V Sbjct: 77 G--PAAGNVTVV 86 >gi|24347442|gb|AAN54703.1|AE015611_1 cold shock domain family protein [Shewanella oneidensis MR-1] Length = 81 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V+Y+ Q G Sbjct: 17 TGVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSDGFKTLAEGQKVSYEVEQGQ-KG 72 Query: 64 KYSAENLKL 72 +A + L Sbjct: 73 PQAANVVVL 81 >gi|323492820|ref|ZP_08097962.1| cold-shock DNA-binding domain-containing protein [Vibrio brasiliensis LMG 20546] gi|323312891|gb|EGA66013.1| cold-shock DNA-binding domain-containing protein [Vibrio brasiliensis LMG 20546] Length = 70 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFITPE G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 6 TGIVKWFNEEKGFGFITPE---NGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQ-KG 61 Query: 64 KYSAENL 70 +A + Sbjct: 62 PQAANVV 68 >gi|116695961|ref|YP_841537.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] gi|113530460|emb|CAJ96807.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] Length = 67 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFITP+ + G D+F H S + G +L EG V ++ Q Sbjct: 1 MATGIVKWFNSEKGYGFITPD---DGGKDLFAHHSEIQGTGFKSLEEGARVEFEVTQGQK 57 Query: 62 NGKYS 66 + S Sbjct: 58 GPQAS 62 >gi|94971382|ref|YP_593430.1| cold-shock DNA-binding protein family protein [Candidatus Koribacter versatilis Ellin345] gi|94553432|gb|ABF43356.1| cold-shock DNA-binding protein family [Candidatus Koribacter versatilis Ellin345] Length = 66 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGF+T +SG+DVF+H SA+ S G +L EGQ V++ V+ Sbjct: 1 MEQGTVKWFNDAKGYGFLT----RQSGEDVFVHFSAIQSKGFRSLQEGQTVSFSVVKGPK 56 Query: 62 NGKYSAENLKLV 73 AEN+++V Sbjct: 57 G--LQAENVQIV 66 >gi|254253023|ref|ZP_04946341.1| Cold shock protein [Burkholderia dolosa AUO158] gi|124895632|gb|EAY69512.1| Cold shock protein [Burkholderia dolosa AUO158] Length = 67 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ GDD+F H S + G L EGQ V+Y+ + Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---NGGDDLFAHFSEIRGDGFKTLAEGQKVSYETKKGPK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--LQASNITPL 67 >gi|330447209|ref|ZP_08310859.1| 'Cold-shock' DNA-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491400|dbj|GAA05356.1| 'Cold-shock' DNA-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 71 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V++D Q G Sbjct: 7 TGSVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQGQ-KG 62 Query: 64 KYSAENLKL 72 +A + L Sbjct: 63 LQAANVVAL 71 >gi|270261198|ref|ZP_06189471.1| hypothetical protein SOD_a04230 [Serratia odorifera 4Rx13] gi|270044682|gb|EFA17773.1| hypothetical protein SOD_a04230 [Serratia odorifera 4Rx13] Length = 69 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y Q+ Sbjct: 4 KTGQVKWFNESKGFGFIEQ---NDGGKDVFVHFSAIATDGFKTLAEGQRVEYSI-QDSPR 59 Query: 63 GKYSAENLKL 72 G +A + L Sbjct: 60 GPAAANVVAL 69 >gi|154250399|ref|YP_001411224.1| cold-shock DNA-binding domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154154335|gb|ABS61567.1| putative cold-shock DNA-binding domain protein [Fervidobacterium nodosum Rt17-B1] Length = 66 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KGYGFIT E+G DVF+H SA+ G L EG V +D QN G Sbjct: 2 KGTVKWFDSSKGYGFIT----GENGQDVFVHFSAIQMDGFKTLKEGDKVEFDI-QNGQKG 56 Query: 64 KYSAENLKLVP 74 +A N+KLV Sbjct: 57 PQAA-NVKLVK 66 >gi|213966043|ref|ZP_03394232.1| conserved domain protein [Corynebacterium amycolatum SK46] gi|213951338|gb|EEB62731.1| conserved domain protein [Corynebacterium amycolatum SK46] Length = 67 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P + G+DVF+H S + G L E Q V ++ + Sbjct: 1 MAQGTVKWFNSEKGFGFIAP---ADGGNDVFVHYSEIQGTGFKTLEENQAVEFEIGEGQK 57 Query: 62 NGKYSAENLKLV 73 A ++K + Sbjct: 58 G--PQALDVKPL 67 >gi|157962355|ref|YP_001502389.1| cold-shock DNA-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|167623650|ref|YP_001673944.1| cold-shock DNA-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|212634693|ref|YP_002311218.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3] gi|157847355|gb|ABV87854.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC 700345] gi|167353672|gb|ABZ76285.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis HAW-EB4] gi|212556177|gb|ACJ28631.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3] Length = 68 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G+DVF H S + G L GQ V+++ Sbjct: 1 MASGTVKWFNNAKGFGFICPDA---GGEDVFAHYSTIEMEGYRTLKAGQPVSFEVEAGPK 57 Query: 62 NGKYSA 67 SA Sbjct: 58 GMHASA 63 >gi|89073384|ref|ZP_01159908.1| putative cold shock-like protein CspD [Photobacterium sp. SKA34] gi|90579121|ref|ZP_01234931.1| putative cold shock-like protein CspD [Vibrio angustum S14] gi|89050871|gb|EAR56345.1| putative cold shock-like protein CspD [Photobacterium sp. SKA34] gi|90439954|gb|EAS65135.1| putative cold shock-like protein CspD [Vibrio angustum S14] Length = 73 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE + DD+F H S + G L GQ V Y+ VQ Sbjct: 1 MATGTVKWFNNAKGFGFICPE---DGEDDIFAHYSTIQMEGYRTLKAGQQVNYE-VQTGP 56 Query: 62 NGKYSAENL 70 G +++E + Sbjct: 57 KGYHASEII 65 >gi|320323777|gb|EFW79861.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. glycinea str. B076] gi|320327917|gb|EFW83922.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. glycinea str. race 4] gi|330881200|gb|EGH15349.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. glycinea str. race 4] gi|330987930|gb|EGH86033.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010738|gb|EGH90794.1| cold shock domain-containing protein CspD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 92 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G + DD+F H S + G L GQ V+++ +Q Sbjct: 1 MLNGKVKWFNNAKGYGFIIEDGKPD--DDLFAHFSTIQMEGYKTLKAGQPVSFEIIQGPK 58 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 59 G--LHAVNIAPL 68 >gi|325676595|ref|ZP_08156273.1| cold shock transcription regulator protein [Rhodococcus equi ATCC 33707] gi|325552773|gb|EGD22457.1| cold shock transcription regulator protein [Rhodococcus equi ATCC 33707] Length = 98 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI PE + DVF H S + G +L E Q V+YD Q Sbjct: 32 MANGTVKWFNAEKGFGFIAPE---DGSADVFAHYSEIQGGGFRSLDENQRVSYDLGQGAK 88 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 89 G--PQATNITAI 98 >gi|210608483|ref|ZP_03287859.1| hypothetical protein CLONEX_00038 [Clostridium nexile DSM 1787] gi|210153059|gb|EEA84065.1| hypothetical protein CLONEX_00038 [Clostridium nexile DSM 1787] Length = 66 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGFI S E+G+DVF+H S + G +L EGQ V ++ + A Sbjct: 1 MNKGTVKWFNNQKGYGFI----SDEAGNDVFVHYSGLNMEGFKSLEEGQEVEFEVTEG-A 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 KGPQAVNVVKL 66 >gi|167758030|ref|ZP_02430157.1| hypothetical protein CLOSCI_00368 [Clostridium scindens ATCC 35704] gi|167663927|gb|EDS08057.1| hypothetical protein CLOSCI_00368 [Clostridium scindens ATCC 35704] Length = 80 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +V +G++KW+N KGYGFI+ E+G+DVF+H S + G +L EGQ V YD + Sbjct: 14 IVMKGTVKWFNNQKGYGFIS----DEAGNDVFVHYSGLNMDGFKSLEEGQEVEYDVTEG- 68 Query: 61 ANGKYSAENLKL 72 A G + +L Sbjct: 69 AKGPQAVNVTRL 80 >gi|300857641|ref|YP_003782624.1| cold shock-like protein A [Corynebacterium pseudotuberculosis FRC41] gi|300685095|gb|ADK28017.1| cold shock-like protein A [Corynebacterium pseudotuberculosis FRC41] gi|302205379|gb|ADL09721.1| Cold-shock protein [Corynebacterium pseudotuberculosis C231] gi|302329933|gb|ADL20127.1| Cold-shock protein [Corynebacterium pseudotuberculosis 1002] gi|308275617|gb|ADO25516.1| Cold-shock protein [Corynebacterium pseudotuberculosis I19] Length = 67 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+ + DVF+H S + G L E Q V ++ + Sbjct: 1 MAQGTVKWFNAEKGFGFIAPD---DGSADVFVHYSEIQGNGFRTLEENQKVEFEIGEGAK 57 Query: 62 NGKYS 66 + Sbjct: 58 GPQAQ 62 >gi|312138017|ref|YP_004005353.1| cold shock protein [Rhodococcus equi 103S] gi|325675220|ref|ZP_08154905.1| cold shock protein A [Rhodococcus equi ATCC 33707] gi|311887356|emb|CBH46667.1| cold shock protein [Rhodococcus equi 103S] gi|325553926|gb|EGD23603.1| cold shock protein A [Rhodococcus equi ATCC 33707] Length = 67 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H S + +G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGSGFRTLEENQRVEFEVGQGTK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|238792393|ref|ZP_04636027.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909] gi|238728319|gb|EEQ19839.1| Cold shock-like protein cspE [Yersinia intermedia ATCC 29909] Length = 72 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y Q+ Sbjct: 7 KTGQVKWFNESKGFGFIEQH---DGGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPR 62 Query: 63 GKYSAENLKL 72 G +A + L Sbjct: 63 GPAAANVVAL 72 >gi|170702637|ref|ZP_02893506.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171319239|ref|ZP_02908355.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|172064865|ref|YP_001815577.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria MC40-6] gi|170132457|gb|EDT00916.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171095541|gb|EDT40505.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|171997107|gb|ACB68024.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MC40-6] Length = 67 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S + G L EGQ V+Y+ ++ Sbjct: 1 MDTGTVKWFNDGKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAEGQKVSYE-TKSGP 56 Query: 62 NGKYSAE 68 G +A Sbjct: 57 KGLQAAN 63 >gi|16801058|ref|NP_471326.1| hypothetical protein lin1992 [Listeria innocua Clip11262] gi|16803918|ref|NP_465403.1| hypothetical protein lmo1879 [Listeria monocytogenes EGD-e] gi|46908111|ref|YP_014500.1| cold-shock domain-contain protein [Listeria monocytogenes serotype 4b str. F2365] gi|116873314|ref|YP_850095.1| cold shock-like protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217963969|ref|YP_002349647.1| hypothetical protein LMHCC_0678 [Listeria monocytogenes HCC23] gi|224500231|ref|ZP_03668580.1| hypothetical protein LmonF1_11339 [Listeria monocytogenes Finland 1988] gi|224501322|ref|ZP_03669629.1| hypothetical protein LmonFR_02165 [Listeria monocytogenes FSL R2-561] gi|226224482|ref|YP_002758589.1| cold shock protein [Listeria monocytogenes Clip81459] gi|254826079|ref|ZP_05231080.1| cspD [Listeria monocytogenes FSL J1-194] gi|254827237|ref|ZP_05231924.1| cspD [Listeria monocytogenes FSL N3-165] gi|254831521|ref|ZP_05236176.1| cold shock protein [Listeria monocytogenes 10403S] gi|254852782|ref|ZP_05242130.1| cspD [Listeria monocytogenes FSL R2-503] gi|254899425|ref|ZP_05259349.1| cold shock protein [Listeria monocytogenes J0161] gi|254912436|ref|ZP_05262448.1| cspD [Listeria monocytogenes J2818] gi|254931951|ref|ZP_05265310.1| cspD [Listeria monocytogenes HPB2262] gi|254936763|ref|ZP_05268460.1| cspD [Listeria monocytogenes F6900] gi|254992229|ref|ZP_05274419.1| cold shock protein [Listeria monocytogenes FSL J2-064] gi|255025065|ref|ZP_05297051.1| cold shock protein [Listeria monocytogenes FSL J1-208] gi|255521585|ref|ZP_05388822.1| cold shock protein [Listeria monocytogenes FSL J1-175] gi|284802324|ref|YP_003414189.1| hypothetical protein LM5578_2080 [Listeria monocytogenes 08-5578] gi|284995466|ref|YP_003417234.1| hypothetical protein LM5923_2031 [Listeria monocytogenes 08-5923] gi|289435225|ref|YP_003465097.1| cold shock protein CspD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290892995|ref|ZP_06555984.1| cspD protein [Listeria monocytogenes FSL J2-071] gi|300763811|ref|ZP_07073808.1| hypothetical protein LMHG_10648 [Listeria monocytogenes FSL N1-017] gi|315282896|ref|ZP_07871202.1| conserved domain protein [Listeria marthii FSL S4-120] gi|16411332|emb|CAC99957.1| cspD [Listeria monocytogenes EGD-e] gi|16414493|emb|CAC97222.1| cspD [Listeria innocua Clip11262] gi|46881381|gb|AAT04677.1| cold-shock domain family protein [Listeria monocytogenes serotype 4b str. F2365] gi|116742192|emb|CAK21316.1| cold shock-like protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217333239|gb|ACK39033.1| conserved domain protein [Listeria monocytogenes HCC23] gi|225876944|emb|CAS05653.1| Putative cold shock protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599620|gb|EEW12945.1| cspD [Listeria monocytogenes FSL N3-165] gi|258606109|gb|EEW18717.1| cspD [Listeria monocytogenes FSL R2-503] gi|258609359|gb|EEW21967.1| cspD [Listeria monocytogenes F6900] gi|284057886|gb|ADB68827.1| hypothetical protein LM5578_2080 [Listeria monocytogenes 08-5578] gi|284060933|gb|ADB71872.1| hypothetical protein LM5923_2031 [Listeria monocytogenes 08-5923] gi|289171469|emb|CBH28013.1| cold shock protein CspD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290557355|gb|EFD90880.1| cspD protein [Listeria monocytogenes FSL J2-071] gi|293583503|gb|EFF95535.1| cspD [Listeria monocytogenes HPB2262] gi|293590418|gb|EFF98752.1| cspD [Listeria monocytogenes J2818] gi|293595320|gb|EFG03081.1| cspD [Listeria monocytogenes FSL J1-194] gi|300515547|gb|EFK42597.1| hypothetical protein LMHG_10648 [Listeria monocytogenes FSL N1-017] gi|307571461|emb|CAR84640.1| cold-shock domain family protein [Listeria monocytogenes L99] gi|313608061|gb|EFR84139.1| conserved domain protein [Listeria monocytogenes FSL F2-208] gi|313613460|gb|EFR87298.1| conserved domain protein [Listeria marthii FSL S4-120] gi|313618218|gb|EFR90291.1| conserved domain protein [Listeria innocua FSL S4-378] gi|313623202|gb|EFR93457.1| conserved domain protein [Listeria innocua FSL J1-023] gi|313632692|gb|EFR99666.1| conserved domain protein [Listeria seeligeri FSL N1-067] gi|313637242|gb|EFS02750.1| conserved domain protein [Listeria seeligeri FSL S4-171] gi|328466229|gb|EGF37386.1| cold shock protein CspD [Listeria monocytogenes 1816] gi|328473596|gb|EGF44433.1| cold shock protein CspD [Listeria monocytogenes 220] gi|332312320|gb|EGJ25415.1| Cold shock-like protein CspD [Listeria monocytogenes str. Scott A] Length = 66 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI ++ G+D+F+H +A+ G +L EGQ VT++ V+ + Sbjct: 1 MQNGKVKWFNNEKGYGFIE----SDGGEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGNR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--AQAANVE 64 >gi|319936791|ref|ZP_08011203.1| cold shock protein cspD [Coprobacillus sp. 29_1] gi|319808059|gb|EFW04631.1| cold shock protein cspD [Coprobacillus sp. 29_1] Length = 66 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFIT + G D+F+H +++A G +L EGQ V++D Q D Sbjct: 1 MNTGKVKWFNSEKGFGFITVD----GGKDIFVHYTSIAGHGYKSLEEGQNVSFDVTQGDR 56 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 57 G--DQASNVTVL 66 >gi|304415296|ref|ZP_07395986.1| cold shock protein [Candidatus Regiella insecticola LSR1] gi|304282851|gb|EFL91324.1| cold shock protein [Candidatus Regiella insecticola LSR1] Length = 71 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 H+G +KW+N KG+GFITPE + DVF+H SA+ G L EGQ V++ +N A Sbjct: 6 HKGQVKWFNESKGFGFITPE---DGSKDVFVHFSAIQDNGFKTLAEGQNVSFSI-ENGAK 61 Query: 63 GKYSAENLKL 72 G +A L Sbjct: 62 GPSAANVTPL 71 >gi|301381401|ref|ZP_07229819.1| cold shock domain family protein [Pseudomonas syringae pv. tomato Max13] gi|302058399|ref|ZP_07249940.1| cold shock domain family protein [Pseudomonas syringae pv. tomato K40] gi|302130352|ref|ZP_07256342.1| cold shock domain family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 91 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G +D+F H SA+ G L GQ V ++ +Q Sbjct: 3 MLNGKVKWFNNAKGYGFILEDGKPN--EDLFAHYSAIQMDGYKTLKAGQSVRFEIIQGPK 60 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 61 G--LHAVNIQ 68 >gi|301160186|emb|CBW19708.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323179480|gb|EFZ65047.1| cold shock-like protein cspG [Escherichia coli 1180] Length = 66 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H SA+ + G +L EGQ V++ ++ A G Sbjct: 2 TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 57 Query: 64 KYSAENLK 71 +A N+ Sbjct: 58 P-AAGNVT 64 >gi|310826977|ref|YP_003959334.1| cold shock protein [Eubacterium limosum KIST612] gi|308738711|gb|ADO36371.1| cold shock protein [Eubacterium limosum KIST612] Length = 66 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N +KG+GFI+ E GDDVF+H SA+ G L EGQ VT+D + Sbjct: 1 MNKGTVKWFNSEKGFGFISRE----EGDDVFVHFSAITGDGFKTLNEGQEVTFDTEEGPR 56 Query: 62 NGKYSAENLKL 72 A+N+ + Sbjct: 57 G--LQAKNVSV 65 >gi|288941930|ref|YP_003444170.1| cold-shock DNA-binding domain-containing protein [Allochromatium vinosum DSM 180] gi|288897302|gb|ADC63138.1| cold-shock DNA-binding domain protein [Allochromatium vinosum DSM 180] Length = 68 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGF+ PEG E DVF+H S++ G L EGQ V ++ + Sbjct: 1 MITGIVKWFNNAKGYGFVQPEGREE---DVFVHFSSIDMDGYKTLREGQKVEFELSEG-P 56 Query: 62 NGKYSAENLKLV 73 G ++A ++V Sbjct: 57 KGLHAANVHRVV 68 >gi|188584960|ref|YP_001916505.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349647|gb|ACB83917.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 68 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW++P KGYGFI E + G+DVF+H SA+ G L EGQ V ++ Q D Sbjct: 2 RGTVKWFDPKKGYGFIEKE---DDGEDVFVHFSAIQQEGFKTLEEGQKVEFEVTQGDKG- 57 Query: 64 KYSAENLKLVP 74 AEN+ ++ Sbjct: 58 -PQAENVVVME 67 >gi|317130365|ref|YP_004096647.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] gi|315475313|gb|ADU31916.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] Length = 66 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ VT++ + Sbjct: 1 MEQGKVKWFNSEKGFGFIERE----DGDDVFVHFSAIQGEGFKTLDEGQEVTFEIEEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ V Sbjct: 57 G--PQATNVNKV 66 >gi|291326350|ref|ZP_06124178.2| conserved domain protein [Providencia rettgeri DSM 1131] gi|291314673|gb|EFE55126.1| conserved domain protein [Providencia rettgeri DSM 1131] Length = 66 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFITP + DVF+H SA+ S +L EGQ V++ +N A G Sbjct: 2 TGTVKWFNDDKGFGFITP---ADGSKDVFVHFSAIQSDNFKSLAEGQQVSFTI-ENGAKG 57 Query: 64 KYSAENL 70 +A + Sbjct: 58 PAAANVI 64 >gi|22124143|ref|NP_667566.1| cold shock-like protein [Yersinia pestis KIM 10] gi|108809648|ref|YP_653564.1| major cold shock protein Cspa1 [Yersinia pestis Antiqua] gi|108813686|ref|YP_649453.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516] gi|21956898|gb|AAM83817.1|AE013622_6 cold shock-like protein [Yersinia pestis KIM 10] gi|108777334|gb|ABG19853.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108781561|gb|ABG15619.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] Length = 102 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + +N A G Sbjct: 38 TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 93 Query: 64 KYSAENLKL 72 + + L Sbjct: 94 PSAVNVIAL 102 >gi|300722511|ref|YP_003711801.1| DNA replication inhibitor [Xenorhabdus nematophila ATCC 19061] gi|297629018|emb|CBJ89603.1| DNA replication inhibitor, nucleic acid-binding domain [Xenorhabdus nematophila ATCC 19061] Length = 76 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + GDD+F H S + G L GQ V + Q Sbjct: 1 METGTVKWFNNAKGFGFICP---SSGGDDIFAHYSTIQMDGYRTLKAGQKVNFSVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|332686444|ref|YP_004456218.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311] gi|332370453|dbj|BAK21409.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311] Length = 66 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT E+G+DVF+H SA+ G L EG VT+D + Sbjct: 1 METGTVKWFNSDKGFGFIT----AENGNDVFVHFSAIQGDGFKTLEEGHTVTFDIEEGQ- 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGPQATNVVK 65 >gi|302187164|ref|ZP_07263837.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. syringae 642] Length = 139 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 72 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 126 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 127 LQAEDVIAALPR 138 >gi|295704907|ref|YP_003597982.1| cold shock protein [Bacillus megaterium DSM 319] gi|294802566|gb|ADF39632.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N DKG+GFI E G+DVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MEHGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQGEGFKSLDEGQEVTFDIEQGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQATNVR 64 >gi|149182243|ref|ZP_01860723.1| cold-shock domain family protein [Bacillus sp. SG-1] gi|148850012|gb|EDL64182.1| cold-shock domain family protein [Bacillus sp. SG-1] Length = 66 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ VT+D + Sbjct: 1 MEHGKVKWFNSEKGFGFIERE----GGDDVFVHFSAIQGEGYKSLDEGQEVTFDIEEGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQATNVQ 64 >gi|37725747|gb|AAO32342.1| cold shock protein 2 [Streptomyces sp. AA8321] Length = 65 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW N +KG+GFI +G G DVF+H SA+ ++G +L E Q VT+D Q Sbjct: 1 MACGTVKWLNAEKGFGFIAQDG---GGPDVFVHYSAINASGFRSLEENQQVTFDVTQGPK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENIT 65 >gi|297194957|ref|ZP_06912355.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152559|gb|EFH31845.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] Length = 67 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ VT+D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|163942598|ref|YP_001647482.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229014070|ref|ZP_04171193.1| Cold shock protein cspB [Bacillus mycoides DSM 2048] gi|229062554|ref|ZP_04199865.1| Cold shock protein cspB [Bacillus cereus AH603] gi|229135709|ref|ZP_04264485.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196] gi|229169605|ref|ZP_04297308.1| Cold shock protein cspB [Bacillus cereus AH621] gi|2493764|sp|Q45099|CSPD_BACCE RecName: Full=Cold shock-like protein CspD gi|1405476|emb|CAA63610.1| CspD protein [Bacillus cereus] gi|163864795|gb|ABY45854.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] gi|228613880|gb|EEK71002.1| Cold shock protein cspB [Bacillus cereus AH621] gi|228647746|gb|EEL03805.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196] gi|228716728|gb|EEL68422.1| Cold shock protein cspB [Bacillus cereus AH603] gi|228747216|gb|EEL97096.1| Cold shock protein cspB [Bacillus mycoides DSM 2048] Length = 66 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V+++ V + Sbjct: 1 MQTGKVKWFNGEKGFGFIEVE----GGEDVFVHFSAIQGDGFKTLEEGQEVSFEIV-DGN 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|229135998|ref|ZP_04264758.1| hypothetical protein bcere0014_48750 [Bacillus cereus BDRD-ST196] gi|228647456|gb|EEL03531.1| hypothetical protein bcere0014_48750 [Bacillus cereus BDRD-ST196] Length = 65 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EGQ V +D V + A G Sbjct: 2 QGRVKWFNAEKGFGFIERE----DGDDVFVHFSAIQQDGYKSLEEGQQVEFDIV-DGARG 56 Query: 64 KYSAENLKL 72 + +KL Sbjct: 57 PQADNVVKL 65 >gi|255659158|ref|ZP_05404567.1| conserved domain protein [Mitsuokella multacida DSM 20544] gi|260848608|gb|EEX68615.1| conserved domain protein [Mitsuokella multacida DSM 20544] Length = 66 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P+KGYGFI E GDDVF+H SA+ G L EGQ V ++ V+ A G Sbjct: 3 GKVKWFSPEKGYGFIARE----GGDDVFVHFSAIQDEGFKTLNEGQDVEFEIVEG-ARGP 57 Query: 65 YSAENLK 71 +A +K Sbjct: 58 QAANVIK 64 >gi|254390979|ref|ZP_05006188.1| cold-shock DNA-binding domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|326445565|ref|ZP_08220299.1| cold-shock DNA-binding domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|197704675|gb|EDY50487.1| cold-shock DNA-binding domain-containing protein [Streptomyces clavuligerus ATCC 27064] Length = 70 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT++ VQ Sbjct: 4 RQNGTVKWFNDEKGYGFITPE----SGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++++ Sbjct: 60 G--MQADRVQVL 69 >gi|163842703|ref|YP_001627107.1| ATP/GTP-binding motif-containing protein [Brucella suis ATCC 23445] gi|163673426|gb|ABY37537.1| ATP/GTP-binding site motif A (P-loop) protein [Brucella suis ATCC 23445] Length = 69 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI P+ + DVF+H SAV AGL +L +GQ V Y+ V + Sbjct: 1 MANGTVKFFNSTKGFGFIQPD---DGSSDVFVHISAVERAGLHSLVQGQKVGYEVVADRR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKSAAANLE 67 >gi|154248732|ref|YP_001409557.1| cold-shock DNA-binding domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154152668|gb|ABS59900.1| putative cold-shock DNA-binding domain protein [Fervidobacterium nodosum Rt17-B1] Length = 66 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KGYGFIT E G+D+F+H SA+ + G L EG V ++ VQN G Sbjct: 2 KGTVKWFDAKKGYGFIT----KEDGEDIFVHYSAIQAEGYKTLKEGDKVEFE-VQNGQKG 56 Query: 64 KYSAENLKLVP 74 +A N+K++ Sbjct: 57 PQAA-NVKVIK 66 >gi|330992259|ref|ZP_08316207.1| putative cold shock protein y4cH [Gluconacetobacter sp. SXCC-1] gi|329760458|gb|EGG76954.1| putative cold shock protein y4cH [Gluconacetobacter sp. SXCC-1] Length = 68 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + D F+H SAV AG L EGQ VTYD + Sbjct: 1 MAAGTVKWFNAQKGFGFIQPD---DGSADAFVHISAVEQAGQQTLNEGQAVTYDL-ERGR 56 Query: 62 NGKYSAENLKL 72 NGK SA NLK+ Sbjct: 57 NGKSSAVNLKI 67 >gi|153875276|ref|ZP_02003150.1| Cold-shock DNA-binding domain protein [Beggiatoa sp. PS] gi|152068260|gb|EDN66850.1| Cold-shock DNA-binding domain protein [Beggiatoa sp. PS] Length = 67 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG+IKW+N KG+GFI+P T+ G DVF+H S + G L EGQ V ++ + Sbjct: 1 MMRGTIKWFNETKGFGFISP---TDDGRDVFVHYSCIQQKGFKTLKEGQEVEFEATEG-P 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPQA 61 >gi|227509605|ref|ZP_03939654.1| CspA family cold shock transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512551|ref|ZP_03942600.1| CspA family cold shock transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227522777|ref|ZP_03952826.1| CspA family cold shock transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227084235|gb|EEI19547.1| CspA family cold shock transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227090041|gb|EEI25353.1| CspA family cold shock transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227190967|gb|EEI71034.1| CspA family cold shock transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 79 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 7/73 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ +G++KW+N DKGYGFIT + DVF+H SA+ G +L EGQ VT D V++ Sbjct: 12 IMKQGTVKWFNADKGYGFITTDDG-----DVFVHFSAINKDGFKSLDEGQHVTLD-VEDS 65 Query: 61 ANGKYSAENLKLV 73 G +A N+ +V Sbjct: 66 DRGPQAA-NVTVV 77 >gi|309388475|gb|ADO76355.1| cold-shock DNA-binding protein family [Halanaerobium praevalens DSM 2228] Length = 67 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M++ G++KW++ KGYGFI E GDDVF+H SA+ G L + Q V ++ V+ D Sbjct: 1 MIYTGTVKWFDAKKGYGFIERE----DGDDVFVHFSAIEDEGFKTLEDEQEVEFEIVEGD 56 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 57 -RGPQAENVVKL 67 >gi|157691644|ref|YP_001486106.1| major cold shock protein [Bacillus pumilus SAFR-032] gi|157680402|gb|ABV61546.1| major cold shock protein [Bacillus pumilus SAFR-032] Length = 79 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 14 MLEGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN- 68 Query: 62 NGKYSAEN 69 G +A Sbjct: 69 RGPQAANV 76 >gi|29375372|ref|NP_814526.1| cold shock domain-contain protein [Enterococcus faecalis V583] gi|227517748|ref|ZP_03947797.1| cold-shock protein [Enterococcus faecalis TX0104] gi|227554895|ref|ZP_03984942.1| cold-shock protein [Enterococcus faecalis HH22] gi|229546635|ref|ZP_04435360.1| cold-shock protein [Enterococcus faecalis TX1322] gi|229548721|ref|ZP_04437446.1| cold-shock protein [Enterococcus faecalis ATCC 29200] gi|255971235|ref|ZP_05421821.1| cold-shock protein [Enterococcus faecalis T1] gi|255973859|ref|ZP_05424445.1| cold-shock protein [Enterococcus faecalis T2] gi|256617665|ref|ZP_05474511.1| cold-shock protein [Enterococcus faecalis ATCC 4200] gi|256761545|ref|ZP_05502125.1| cold-shock protein [Enterococcus faecalis T3] gi|256854357|ref|ZP_05559721.1| cold shock domain-contain protein [Enterococcus faecalis T8] gi|256957355|ref|ZP_05561526.1| cold-shock protein [Enterococcus faecalis DS5] gi|256959910|ref|ZP_05564081.1| cold-shock protein [Enterococcus faecalis Merz96] gi|256964386|ref|ZP_05568557.1| cold-shock protein [Enterococcus faecalis HIP11704] gi|257077649|ref|ZP_05572010.1| cold-shock protein [Enterococcus faecalis JH1] gi|257081040|ref|ZP_05575401.1| cold shock domain-containing protein [Enterococcus faecalis E1Sol] gi|257083701|ref|ZP_05578062.1| cold shock domain-containing protein [Enterococcus faecalis Fly1] gi|257086135|ref|ZP_05580496.1| cold-shock protein [Enterococcus faecalis D6] gi|257089207|ref|ZP_05583568.1| cold-shock protein [Enterococcus faecalis CH188] gi|257415348|ref|ZP_05592342.1| cold-shock protein [Enterococcus faecalis AR01/DG] gi|257418385|ref|ZP_05595379.1| cold-shock protein [Enterococcus faecalis T11] gi|257421034|ref|ZP_05598024.1| cold shock protein [Enterococcus faecalis X98] gi|293385225|ref|ZP_06631042.1| cold shock protein B [Enterococcus faecalis R712] gi|293388340|ref|ZP_06632852.1| cold shock protein B [Enterococcus faecalis S613] gi|294781498|ref|ZP_06746837.1| cold-shock DNA-binding domain protein [Enterococcus faecalis PC1.1] gi|300859962|ref|ZP_07106050.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11] gi|307270162|ref|ZP_07551479.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX4248] gi|307271388|ref|ZP_07552663.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0855] gi|307276241|ref|ZP_07557370.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX2134] gi|307284456|ref|ZP_07564619.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0860] gi|307289526|ref|ZP_07569472.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0109] gi|307296199|ref|ZP_07576027.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0411] gi|312901759|ref|ZP_07761028.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0470] gi|312904195|ref|ZP_07763358.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0635] gi|312907148|ref|ZP_07766140.1| cold-shock DNA-binding domain protein [Enterococcus faecalis DAPTO 512] gi|312951852|ref|ZP_07770741.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0102] gi|312979273|ref|ZP_07790972.1| cold-shock DNA-binding domain protein [Enterococcus faecalis DAPTO 516] gi|29342832|gb|AAO80596.1| cold shock domain family protein [Enterococcus faecalis V583] gi|227074804|gb|EEI12767.1| cold-shock protein [Enterococcus faecalis TX0104] gi|227175977|gb|EEI56949.1| cold-shock protein [Enterococcus faecalis HH22] gi|229306158|gb|EEN72154.1| cold-shock protein [Enterococcus faecalis ATCC 29200] gi|229308202|gb|EEN74189.1| cold-shock protein [Enterococcus faecalis TX1322] gi|255962253|gb|EET94729.1| cold-shock protein [Enterococcus faecalis T1] gi|255966731|gb|EET97353.1| cold-shock protein [Enterococcus faecalis T2] gi|256597192|gb|EEU16368.1| cold-shock protein [Enterococcus faecalis ATCC 4200] gi|256682796|gb|EEU22491.1| cold-shock protein [Enterococcus faecalis T3] gi|256709917|gb|EEU24961.1| cold shock domain-contain protein [Enterococcus faecalis T8] gi|256947851|gb|EEU64483.1| cold-shock protein [Enterococcus faecalis DS5] gi|256950406|gb|EEU67038.1| cold-shock protein [Enterococcus faecalis Merz96] gi|256954882|gb|EEU71514.1| cold-shock protein [Enterococcus faecalis HIP11704] gi|256985679|gb|EEU72981.1| cold-shock protein [Enterococcus faecalis JH1] gi|256989070|gb|EEU76372.1| cold shock domain-containing protein [Enterococcus faecalis E1Sol] gi|256991731|gb|EEU79033.1| cold shock domain-containing protein [Enterococcus faecalis Fly1] gi|256994165|gb|EEU81467.1| cold-shock protein [Enterococcus faecalis D6] gi|256998019|gb|EEU84539.1| cold-shock protein [Enterococcus faecalis CH188] gi|257157176|gb|EEU87136.1| cold-shock protein [Enterococcus faecalis ARO1/DG] gi|257160213|gb|EEU90173.1| cold-shock protein [Enterococcus faecalis T11] gi|257162858|gb|EEU92818.1| cold shock protein [Enterococcus faecalis X98] gi|291077522|gb|EFE14886.1| cold shock protein B [Enterococcus faecalis R712] gi|291082282|gb|EFE19245.1| cold shock protein B [Enterococcus faecalis S613] gi|294451428|gb|EFG19891.1| cold-shock DNA-binding domain protein [Enterococcus faecalis PC1.1] gi|300850780|gb|EFK78529.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11] gi|306496073|gb|EFM65655.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0411] gi|306499544|gb|EFM68915.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0109] gi|306503264|gb|EFM72517.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0860] gi|306507097|gb|EFM76238.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX2134] gi|306511920|gb|EFM80915.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0855] gi|306513531|gb|EFM82146.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX4248] gi|310626859|gb|EFQ10142.1| cold-shock DNA-binding domain protein [Enterococcus faecalis DAPTO 512] gi|310630150|gb|EFQ13433.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0102] gi|310632460|gb|EFQ15743.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0635] gi|311287931|gb|EFQ66487.1| cold-shock DNA-binding domain protein [Enterococcus faecalis DAPTO 516] gi|311291228|gb|EFQ69784.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0470] gi|315027570|gb|EFT39502.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX2137] gi|315029859|gb|EFT41791.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX4000] gi|315031281|gb|EFT43213.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0017] gi|315035333|gb|EFT47265.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0027] gi|315145280|gb|EFT89296.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX2141] gi|315148239|gb|EFT92255.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX4244] gi|315151651|gb|EFT95667.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0012] gi|315153201|gb|EFT97217.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0031] gi|315154850|gb|EFT98866.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0043] gi|315159935|gb|EFU03952.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0312] gi|315161978|gb|EFU05995.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0645] gi|315164631|gb|EFU08648.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX1302] gi|315167012|gb|EFU11029.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX1341] gi|315170889|gb|EFU14906.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX1342] gi|315174689|gb|EFU18706.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX1346] gi|315573437|gb|EFU85628.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0309B] gi|315578025|gb|EFU90216.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0630] gi|315581320|gb|EFU93511.1| cold-shock DNA-binding domain protein [Enterococcus faecalis TX0309A] gi|323479972|gb|ADX79411.1| cold shock protein CspC [Enterococcus faecalis 62] gi|327534366|gb|AEA93200.1| cold shock protein B [Enterococcus faecalis OG1RF] gi|329577634|gb|EGG59065.1| cold shock protein CspA [Enterococcus faecalis TX1467] Length = 66 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFIT E G+DVF H SA+ S G L EGQ VT+D + Sbjct: 1 MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQSDGFKTLDEGQAVTFD-TEEGP 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGLQATNIVK 65 >gi|227519332|ref|ZP_03949381.1| cold shock protein CspC [Enterococcus faecalis TX0104] gi|227555460|ref|ZP_03985507.1| cold shock protein CspC [Enterococcus faecalis HH22] gi|229545427|ref|ZP_04434152.1| cold shock protein CspC [Enterococcus faecalis TX1322] gi|229549671|ref|ZP_04438396.1| cold shock protein CspC [Enterococcus faecalis ATCC 29200] gi|307268123|ref|ZP_07549510.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|307272817|ref|ZP_07554064.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|307275929|ref|ZP_07557062.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|307295893|ref|ZP_07575725.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|312902769|ref|ZP_07761973.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|312951269|ref|ZP_07770171.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|227073226|gb|EEI11189.1| cold shock protein CspC [Enterococcus faecalis TX0104] gi|227175400|gb|EEI56372.1| cold shock protein CspC [Enterococcus faecalis HH22] gi|229305151|gb|EEN71147.1| cold shock protein CspC [Enterococcus faecalis ATCC 29200] gi|229309463|gb|EEN75450.1| cold shock protein CspC [Enterococcus faecalis TX1322] gi|306496224|gb|EFM65803.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|306507259|gb|EFM76396.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|306510431|gb|EFM79454.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|306515513|gb|EFM84041.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|310630803|gb|EFQ14086.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|310633823|gb|EFQ17106.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|315025996|gb|EFT37928.1| major cold shock protein CspA [Enterococcus faecalis TX2137] gi|315028917|gb|EFT40849.1| major cold shock protein CspA [Enterococcus faecalis TX4000] gi|315033307|gb|EFT45239.1| major cold shock protein CspA [Enterococcus faecalis TX0017] gi|315034545|gb|EFT46477.1| major cold shock protein CspA [Enterococcus faecalis TX0027] gi|315143420|gb|EFT87436.1| major cold shock protein CspA [Enterococcus faecalis TX2141] gi|315147653|gb|EFT91669.1| major cold shock protein CspA [Enterococcus faecalis TX4244] gi|315157261|gb|EFU01278.1| major cold shock protein CspA [Enterococcus faecalis TX0043] gi|315159904|gb|EFU03921.1| major cold shock protein CspA [Enterococcus faecalis TX0312] gi|315161387|gb|EFU05404.1| major cold shock protein CspA [Enterococcus faecalis TX0645] gi|315167485|gb|EFU11502.1| major cold shock protein CspA [Enterococcus faecalis TX1341] gi|315574539|gb|EFU86730.1| major cold shock protein CspA [Enterococcus faecalis TX0309B] gi|315576700|gb|EFU88891.1| major cold shock protein CspA [Enterococcus faecalis TX0630] gi|315581819|gb|EFU94010.1| major cold shock protein CspA [Enterococcus faecalis TX0309A] Length = 73 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFIT E G+DVF H SA+ + G +L EGQ VT+D + Sbjct: 8 MNNGTVKWFNSDKGFGFIT----GEDGNDVFAHFSAIQADGFKSLEEGQAVTFDIEEGQR 63 Query: 62 NGKYSAENL 70 A N+ Sbjct: 64 G--MQAVNI 70 >gi|167564263|ref|ZP_02357179.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis EO147] gi|167571414|ref|ZP_02364288.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis C6786] Length = 67 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITPEG G+D+F H S + S G L E Q V ++ V+ Sbjct: 1 MATGTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRSEGFKTLQENQKVEFE-VKTGP 56 Query: 62 NGKYSAENLKLV 73 G +A N+K + Sbjct: 57 KGLQAA-NIKPL 67 >gi|269103742|ref|ZP_06156439.1| cold shock protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163640|gb|EEZ42136.1| cold shock protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 69 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFI+ + G DVF+H A+AS G L EGQ V++D Q G Sbjct: 5 TGIVKWFNEEKGFGFISQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQGQ-KG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PQAANVVAL 69 >gi|226357786|ref|YP_002787526.1| cold shock protein [Deinococcus deserti VCD115] gi|226320029|gb|ACO48022.1| putative cold shock protein [Deinococcus deserti VCD115] Length = 87 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI T G DVF H SA++ +G L EG V ++ + Sbjct: 1 MPAGKVKWFNAEKGFGFIE----TPGGPDVFAHFSAISGSGFKKLNEGDEVEFELEEGQR 56 Query: 62 NGKYSAENLKLVPKS 76 A+N+ + + Sbjct: 57 GKGPQAKNIVVTKAA 71 >gi|217970098|ref|YP_002355332.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] gi|217507425|gb|ACK54436.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] Length = 69 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 4/66 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KG+GFITPEG GDD+F H S + S G +L E Q V ++ V+ Sbjct: 4 QTGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIQSKGFKSLAENQRVEFE-VKTGPK 59 Query: 63 GKYSAE 68 G +A Sbjct: 60 GLQAAN 65 >gi|30261699|ref|NP_844076.1| cold shock protein CspB [Bacillus anthracis str. Ames] gi|47526914|ref|YP_018263.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor'] gi|49184527|ref|YP_027779.1| cold shock protein CspB [Bacillus anthracis str. Sterne] gi|49480968|ref|YP_035816.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318968|ref|ZP_00391927.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012] gi|165869260|ref|ZP_02213919.1| cold shock protein CspB [Bacillus anthracis str. A0488] gi|167633426|ref|ZP_02391751.1| cold shock protein CspB [Bacillus anthracis str. A0442] gi|167639155|ref|ZP_02397428.1| cold shock protein CspB [Bacillus anthracis str. A0193] gi|170686113|ref|ZP_02877335.1| cold shock protein CspB [Bacillus anthracis str. A0465] gi|170706544|ref|ZP_02897004.1| cold shock protein CspB [Bacillus anthracis str. A0389] gi|177650384|ref|ZP_02933351.1| cold shock protein CspB [Bacillus anthracis str. A0174] gi|190566507|ref|ZP_03019425.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I] gi|196033540|ref|ZP_03100952.1| cold shock protein CspB [Bacillus cereus W] gi|196038892|ref|ZP_03106199.1| cold shock protein CspB [Bacillus cereus NVH0597-99] gi|196046644|ref|ZP_03113868.1| cold shock protein CspB [Bacillus cereus 03BB108] gi|225863558|ref|YP_002748936.1| cold shock protein CspB [Bacillus cereus 03BB102] gi|227815548|ref|YP_002815557.1| cold shock protein CspB [Bacillus anthracis str. CDC 684] gi|228914278|ref|ZP_04077893.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228945302|ref|ZP_04107657.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229183890|ref|ZP_04311106.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1] gi|229602706|ref|YP_002866103.1| cold shock protein CspB [Bacillus anthracis str. A0248] gi|254683188|ref|ZP_05147049.1| cold-shock DNA-binding protein family protein [Bacillus anthracis str. CNEVA-9066] gi|254723778|ref|ZP_05185564.1| cold-shock DNA-binding protein family protein [Bacillus anthracis str. A1055] gi|254734540|ref|ZP_05192252.1| cold-shock DNA-binding protein family protein [Bacillus anthracis str. Western North America USA6153] gi|254740949|ref|ZP_05198637.1| cold-shock DNA-binding protein family protein [Bacillus anthracis str. Kruger B] gi|254755191|ref|ZP_05207225.1| cold-shock DNA-binding protein family protein [Bacillus anthracis str. Vollum] gi|254759728|ref|ZP_05211752.1| cold-shock DNA-binding protein family protein [Bacillus anthracis str. Australia 94] gi|301053238|ref|YP_003791449.1| cold shock protein [Bacillus anthracis CI] gi|30255927|gb|AAP25562.1| cold shock protein CspB [Bacillus anthracis str. Ames] gi|47502062|gb|AAT30738.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor'] gi|49178454|gb|AAT53830.1| cold shock protein CspB [Bacillus anthracis str. Sterne] gi|49332524|gb|AAT63170.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164714700|gb|EDR20218.1| cold shock protein CspB [Bacillus anthracis str. A0488] gi|167512945|gb|EDR88318.1| cold shock protein CspB [Bacillus anthracis str. A0193] gi|167531464|gb|EDR94142.1| cold shock protein CspB [Bacillus anthracis str. A0442] gi|170128642|gb|EDS97509.1| cold shock protein CspB [Bacillus anthracis str. A0389] gi|170669810|gb|EDT20551.1| cold shock protein CspB [Bacillus anthracis str. A0465] gi|172083528|gb|EDT68588.1| cold shock protein CspB [Bacillus anthracis str. A0174] gi|190562642|gb|EDV16609.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I] gi|195993974|gb|EDX57930.1| cold shock protein CspB [Bacillus cereus W] gi|196022577|gb|EDX61260.1| cold shock protein CspB [Bacillus cereus 03BB108] gi|196030037|gb|EDX68637.1| cold shock protein CspB [Bacillus cereus NVH0597-99] gi|225786101|gb|ACO26318.1| cold shock protein CspB [Bacillus cereus 03BB102] gi|227005644|gb|ACP15387.1| cold shock protein CspB [Bacillus anthracis str. CDC 684] gi|228599542|gb|EEK57146.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1] gi|228814274|gb|EEM60540.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228845272|gb|EEM90308.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267114|gb|ACQ48751.1| cold shock protein CspB [Bacillus anthracis str. A0248] gi|300375407|gb|ADK04311.1| cold shock protein [Bacillus cereus biovar anthracis str. CI] Length = 65 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|323160675|gb|EFZ46614.1| cold shock-like protein cspG [Escherichia coli E128010] Length = 70 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H SA+ + G +L EGQ V++ ++ A G Sbjct: 6 TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFSI-ESGAKG 61 Query: 64 KYSAENLK 71 +A N+ Sbjct: 62 P-AAGNVT 68 >gi|284990776|ref|YP_003409330.1| cold-shock DNA-binding domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284064021|gb|ADB74959.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus DSM 43160] Length = 310 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KG+GFI P+ + G DVF+H SA+A G L EGQ V ++ Q Sbjct: 1 MPQGTVKWFNAEKGFGFIEPD---DGGQDVFVHFSAIADEGGFRTLDEGQQVEFEASQGQ 57 Query: 61 ANGKYSAENLKLV 73 A++++ V Sbjct: 58 RG--LQADSVRPV 68 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 5/64 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N +KG+GFI + + G DVF+H SA+ G +L EGQ V ++ + Sbjct: 245 NGTVKWFNAEKGFGFIEAD---DGGPDVFVHFSAISDRGGYRSLDEGQRVEFE-ASDGQR 300 Query: 63 GKYS 66 G+ + Sbjct: 301 GRQA 304 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDANGKY 65 + W++ DKG+GFI P+ E G DVF+H S +A + G +L EGQ V + Q Sbjct: 122 VTWFDNDKGFGFIQPD---EDGPDVFVHFSQIADSGGYRSLDEGQRVEFAVTQGQRG--P 176 Query: 66 SAENLK 71 AE+++ Sbjct: 177 QAEDVR 182 >gi|227509828|ref|ZP_03939877.1| CspA family cold shock transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512764|ref|ZP_03942813.1| CspA family cold shock transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227522888|ref|ZP_03952937.1| CspA family cold shock transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227083964|gb|EEI19276.1| CspA family cold shock transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227089917|gb|EEI25229.1| CspA family cold shock transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227190752|gb|EEI70819.1| CspA family cold shock transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 66 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKGYGFIT E+G DVF+H SA+ + G L EGQ VT D + D Sbjct: 1 MEQGTVKWFNGDKGYGFIT----LENGSDVFVHFSAINADGFKTLEEGQKVTLDVEKGD- 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGLQAANV 63 >gi|27467496|ref|NP_764133.1| cold-shock protein C [Staphylococcus epidermidis ATCC 12228] gi|57866355|ref|YP_188058.1| CSD family cold shock protein [Staphylococcus epidermidis RP62A] gi|242242178|ref|ZP_04796623.1| cold-shock protein [Staphylococcus epidermidis W23144] gi|251810255|ref|ZP_04824728.1| cold-shock protein [Staphylococcus epidermidis BCM-HMP0060] gi|282875621|ref|ZP_06284492.1| cold-shock DNA-binding domain protein [Staphylococcus epidermidis SK135] gi|293368262|ref|ZP_06614891.1| cold-shock protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27315039|gb|AAO04175.1|AE016745_274 cold-shock protein C [Staphylococcus epidermidis ATCC 12228] gi|57637013|gb|AAW53801.1| cold shock protein, CSD family [Staphylococcus epidermidis RP62A] gi|242234351|gb|EES36663.1| cold-shock protein [Staphylococcus epidermidis W23144] gi|251806307|gb|EES58964.1| cold-shock protein [Staphylococcus epidermidis BCM-HMP0060] gi|281295648|gb|EFA88171.1| cold-shock DNA-binding domain protein [Staphylococcus epidermidis SK135] gi|291317685|gb|EFE58102.1| cold-shock protein [Staphylococcus epidermidis M23864:W2(grey)] gi|319401831|gb|EFV90039.1| cold shock protein cspC [Staphylococcus epidermidis FRI909] gi|329723353|gb|EGG59883.1| major cold shock protein CspA [Staphylococcus epidermidis VCU144] gi|329736857|gb|EGG73122.1| major cold shock protein CspA [Staphylococcus epidermidis VCU028] gi|329737950|gb|EGG74174.1| major cold shock protein CspA [Staphylococcus epidermidis VCU045] Length = 66 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E +G DVF+H SA+ G +L EGQ V +D V+ + Sbjct: 1 MNNGTVKWFNAEKGFGFIERE----NGGDVFVHFSAIVEDGYKSLEEGQSVEFDIVEGE- 55 Query: 62 NGKYSAENLKL 72 G+ +A +K+ Sbjct: 56 RGEQAANVVKM 66 >gi|218676106|ref|YP_002394925.1| cold shock protein [Vibrio splendidus LGP32] gi|218324374|emb|CAV25748.1| cold shock protein [Vibrio splendidus LGP32] Length = 76 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + G++KW+N +KG+GFI+ + G DVF+H A+AS G L EGQ V+++ V+N Sbjct: 11 NTGTVKWFNEEKGFGFISQD---NGGADVFVHFRAIASEGFKTLKEGQKVSFE-VENGQK 66 Query: 63 GKYSAENL 70 G +A + Sbjct: 67 GLQAANVV 74 >gi|46199928|ref|YP_005595.1| cold shock protein [Thermus thermophilus HB27] gi|55980328|ref|YP_143625.1| cold shock protein [Thermus thermophilus HB8] gi|46197555|gb|AAS81968.1| cold shock protein [Thermus thermophilus HB27] gi|55771741|dbj|BAD70182.1| cold shock protein [Thermus thermophilus HB8] Length = 68 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G +KW+N +KGYGFI E G DVF+H SA+ + G L+EG+ V ++ Sbjct: 1 MNKGIVKWFNAEKGYGFIQQE----EGPDVFVHFSAIEADGFRTLSEGERVEFEVEPGRN 56 Query: 62 NGKYSAENLKLV 73 A ++ + Sbjct: 57 GKGPQARRVRRL 68 >gi|293396765|ref|ZP_06641041.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] gi|291421029|gb|EFE94282.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] Length = 69 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI + G DVF+H SA+ + G L EGQ V Y Q+ Sbjct: 4 KTGQVKWFNESKGFGFIEQH---DGGKDVFVHFSAIMTDGFKTLAEGQRVEYTI-QDSPR 59 Query: 63 GKYSAENLKL 72 G +A + L Sbjct: 60 GPAAANVVAL 69 >gi|167037174|ref|YP_001664752.1| cold-shock DNA-binding domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040687|ref|YP_001663672.1| cold-shock DNA-binding domain-containing protein [Thermoanaerobacter sp. X514] gi|300914728|ref|ZP_07132044.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp. X561] gi|307724038|ref|YP_003903789.1| cold-shock DNA-binding domain-containing protein [Thermoanaerobacter sp. X513] gi|320115592|ref|YP_004185751.1| Cold-shock protein DNA-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854927|gb|ABY93336.1| putative cold-shock DNA-binding domain protein [Thermoanaerobacter sp. X514] gi|166856008|gb|ABY94416.1| putative cold-shock DNA-binding domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889663|gb|EFK84809.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp. X561] gi|307581099|gb|ADN54498.1| cold-shock DNA-binding domain protein [Thermoanaerobacter sp. X513] gi|319928683|gb|ADV79368.1| Cold-shock protein DNA-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 67 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KGYGFI E G DVF+H SA+ G L EGQ V ++ V+ Sbjct: 1 MVRGKVKWFNAEKGYGFIERE----DGTDVFVHYSAIEGDGFKTLEEGQKVEFEVVEATK 56 Query: 62 NGKYS 66 + S Sbjct: 57 GPQAS 61 >gi|238920340|ref|YP_002933855.1| hypothetical protein NT01EI_2450 [Edwardsiella ictaluri 93-146] gi|269139515|ref|YP_003296216.1| old-shock domain family protein [Edwardsiella tarda EIB202] gi|238869909|gb|ACR69620.1| conserved domain protein [Edwardsiella ictaluri 93-146] gi|267985176|gb|ACY85005.1| old-shock domain family protein [Edwardsiella tarda EIB202] gi|304559404|gb|ADM42068.1| putative cold shock protein CspE2 [Edwardsiella tarda FL6-60] Length = 69 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI + G DVF+H SA+ G L EGQ V Y Q+ Sbjct: 4 KTGQVKWFNESKGFGFIEQH---DGGKDVFVHFSAITGDGFKTLAEGQRVEYTI-QDSPR 59 Query: 63 GKYSAENLKL 72 G +A + L Sbjct: 60 GPAAANVVAL 69 >gi|304413830|ref|ZP_07395247.1| Cold shock protein [Candidatus Regiella insecticola LSR1] gi|304283550|gb|EFL91945.1| Cold shock protein [Candidatus Regiella insecticola LSR1] Length = 88 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFITP+ + DVF+H SA+ G L EGQ V +D + G Sbjct: 24 KGSVKWFNEAKGFGFITPDDKS---KDVFVHFSAIQGDGFKTLGEGQQVEFDIEEG-KKG 79 Query: 64 KYSAENLKL 72 + + L Sbjct: 80 PAAINVVTL 88 >gi|304395415|ref|ZP_07377298.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|308185821|ref|YP_003929952.1| Cold shock-like protein cspG (CPS-G) [Pantoea vagans C9-1] gi|304356709|gb|EFM21073.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|308056331|gb|ADO08503.1| Cold shock-like protein cspG (CPS-G) [Pantoea vagans C9-1] Length = 70 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW+N +KG+GFI+P + DVF+H SA+ +L EGQ V + V+N A G Sbjct: 6 RGTVKWFNAEKGFGFISP---ADGSKDVFVHFSAIQGTDFRSLDEGQQVEF-TVENGAKG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVVGL 70 >gi|281492698|ref|YP_003354678.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|281376355|gb|ADA65845.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +E G D+F H S++ S G +L EGQ V +D + Sbjct: 1 MANGTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEGQKVEFDVEEGQR 56 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 57 G--PQAVNIT 64 >gi|81428382|ref|YP_395382.1| cold shock protein CspA family protein [Lactobacillus sakei subsp. sakei 23K] gi|78610024|emb|CAI55072.1| Similar to cold shock protein, CspA family [Lactobacillus sakei subsp. sakei 23K] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ EG DD+F+H SA+ G +L EGQ V +D V+ Sbjct: 1 MEKGTVKWFNNEKGFGFISVEGQ----DDIFVHFSAIQDEGFKSLEEGQAVEFDIVEGTR 56 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 57 G--AQAANVKKL 66 >gi|15804102|ref|NP_290141.1| major cold shock protein [Escherichia coli O157:H7 EDL933] gi|15833695|ref|NP_312468.1| major cold shock protein [Escherichia coli O157:H7 str. Sakai] gi|16131427|ref|NP_418012.1| RNA chaperone and anti-terminator, cold-inducible [Escherichia coli str. K-12 substr. MG1655] gi|16762659|ref|NP_458276.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|24114823|ref|NP_709333.1| major cold shock protein [Shigella flexneri 2a str. 301] gi|26250199|ref|NP_756239.1| major cold shock protein [Escherichia coli CFT073] gi|29144146|ref|NP_807488.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30065165|ref|NP_839336.1| major cold shock protein [Shigella flexneri 2a str. 2457T] gi|56415543|ref|YP_152618.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182151|ref|YP_218568.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|74314190|ref|YP_312609.1| major cold shock protein [Shigella sonnei Ss046] gi|82545921|ref|YP_409868.1| major cold shock protein [Shigella boydii Sb227] gi|82779380|ref|YP_405729.1| major cold shock protein [Shigella dysenteriae Sd197] gi|89110458|ref|AP_004238.1| major cold shock protein [Escherichia coli str. K-12 substr. W3110] gi|91213070|ref|YP_543056.1| major cold shock protein [Escherichia coli UTI89] gi|110643804|ref|YP_671534.1| major cold shock protein [Escherichia coli 536] gi|110807352|ref|YP_690872.1| major cold shock protein [Shigella flexneri 5 str. 8401] gi|152972426|ref|YP_001337572.1| major cold shock protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157149172|ref|YP_001456492.1| major cold shock protein [Citrobacter koseri ATCC BAA-895] gi|157155319|ref|YP_001465032.1| major cold shock protein [Escherichia coli E24377A] gi|157163031|ref|YP_001460349.1| major cold shock protein [Escherichia coli HS] gi|161616716|ref|YP_001590682.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168232491|ref|ZP_02657549.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235252|ref|ZP_02660310.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|170018215|ref|YP_001723169.1| major cold shock protein [Escherichia coli ATCC 8739] gi|170083064|ref|YP_001732384.1| major cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|170683736|ref|YP_001745842.1| major cold shock protein [Escherichia coli SMS-3-5] gi|170766842|ref|ZP_02901295.1| cold shock DNA-binding protein [Escherichia albertii TW07627] gi|187730606|ref|YP_001882251.1| major cold shock protein [Shigella boydii CDC 3083-94] gi|187775668|ref|ZP_02797489.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|188024513|ref|ZP_02771920.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|188493329|ref|ZP_03000599.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|189010109|ref|ZP_02804714.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|189401797|ref|ZP_02778383.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|189402745|ref|ZP_02790978.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|189403738|ref|ZP_02784655.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|189404722|ref|ZP_02810435.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|189405473|ref|ZP_02822401.2| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|191165334|ref|ZP_03027177.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|191170525|ref|ZP_03032078.1| cold shock DNA-binding protein [Escherichia coli F11] gi|193061815|ref|ZP_03042912.1| cold shock DNA-binding protein [Escherichia coli E22] gi|193068536|ref|ZP_03049498.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194427483|ref|ZP_03060032.1| cold shock DNA-binding protein [Escherichia coli B171] gi|194431091|ref|ZP_03063384.1| cold shock DNA-binding protein [Shigella dysenteriae 1012] gi|194435705|ref|ZP_03067808.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|194443289|ref|YP_002042899.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450219|ref|YP_002047680.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469960|ref|ZP_03075944.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736943|ref|YP_002116583.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195935087|ref|ZP_03080469.1| major cold shock protein [Escherichia coli O157:H7 str. EC4024] gi|197249244|ref|YP_002148580.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262466|ref|ZP_03162540.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364470|ref|YP_002144107.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198241852|ref|YP_002217610.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386615|ref|ZP_03213227.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928494|ref|ZP_03219693.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354743|ref|YP_002228544.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205356895|ref|ZP_02342874.2| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205357597|ref|ZP_02571979.2| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205359051|ref|ZP_02666750.2| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205359542|ref|ZP_02830526.2| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205360333|ref|ZP_02682580.2| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206575782|ref|YP_002236070.1| cold shock-like protein CspA [Klebsiella pneumoniae 342] gi|207858886|ref|YP_002245537.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208807153|ref|ZP_03249490.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208812180|ref|ZP_03253509.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208821921|ref|ZP_03262241.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209400365|ref|YP_002273042.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209921021|ref|YP_002295105.1| major cold shock protein [Escherichia coli SE11] gi|213022040|ref|ZP_03336487.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163585|ref|ZP_03349295.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213422161|ref|ZP_03355227.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428098|ref|ZP_03360848.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582746|ref|ZP_03364572.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213607995|ref|ZP_03368821.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650792|ref|ZP_03380845.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852850|ref|ZP_03382382.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|215488841|ref|YP_002331272.1| major cold shock protein [Escherichia coli O127:H6 str. E2348/69] gi|217326515|ref|ZP_03442599.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|218550842|ref|YP_002384633.1| major cold shock protein [Escherichia fergusonii ATCC 35469] gi|218556117|ref|YP_002389030.1| major cold shock protein [Escherichia coli IAI1] gi|218560633|ref|YP_002393546.1| major cold shock protein [Escherichia coli S88] gi|218691847|ref|YP_002400059.1| major cold shock protein [Escherichia coli ED1a] gi|218697273|ref|YP_002404940.1| major cold shock protein [Escherichia coli 55989] gi|218702321|ref|YP_002409950.1| major cold shock protein [Escherichia coli IAI39] gi|218707191|ref|YP_002414710.1| major cold shock protein [Escherichia coli UMN026] gi|224585449|ref|YP_002639248.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|227883723|ref|ZP_04001528.1| major cold shock protein [Escherichia coli 83972] gi|237703327|ref|ZP_04533808.1| major cold shock protein [Escherichia sp. 3_2_53FAA] gi|237728871|ref|ZP_04559352.1| major cold shock protein [Citrobacter sp. 30_2] gi|238897019|ref|YP_002921765.1| major cold shock protein [Klebsiella pneumoniae NTUH-K2044] gi|238902644|ref|YP_002928440.1| major cold shock protein [Escherichia coli BW2952] gi|238910323|ref|ZP_04654160.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|253771610|ref|YP_003034441.1| major cold shock protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038740|ref|ZP_04872796.1| major cold shock protein [Escherichia sp. 1_1_43] gi|254163479|ref|YP_003046587.1| major cold shock protein [Escherichia coli B str. REL606] gi|254795513|ref|YP_003080350.1| major cold shock protein [Escherichia coli O157:H7 str. TW14359] gi|256020905|ref|ZP_05434770.1| major cold shock protein [Shigella sp. D9] gi|256025717|ref|ZP_05439582.1| major cold shock protein [Escherichia sp. 4_1_40B] gi|260846729|ref|YP_003224507.1| major cold shock protein CspA [Escherichia coli O103:H2 str. 12009] gi|260858048|ref|YP_003231939.1| major cold shock protein CspA [Escherichia coli O26:H11 str. 11368] gi|260870287|ref|YP_003236689.1| major cold shock protein CspA [Escherichia coli O111:H- str. 11128] gi|261224875|ref|ZP_05939156.1| major cold shock protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254226|ref|ZP_05946759.1| major cold shock protein CspA [Escherichia coli O157:H7 str. FRIK966] gi|283835935|ref|ZP_06355676.1| putative cold shock protein [Citrobacter youngae ATCC 29220] gi|288933068|ref|YP_003437127.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|289805377|ref|ZP_06536006.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289828312|ref|ZP_06546237.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|290511862|ref|ZP_06551230.1| cold shock protein cspA [Klebsiella sp. 1_1_55] gi|291284933|ref|YP_003501751.1| Cold shock protein cspA [Escherichia coli O55:H7 str. CB9615] gi|293407179|ref|ZP_06651103.1| cold shock protein CspB [Escherichia coli FVEC1412] gi|293412991|ref|ZP_06655659.1| cold shock protein cspA [Escherichia coli B354] gi|293417005|ref|ZP_06659642.1| cold shock protein cspA [Escherichia coli B185] gi|293453866|ref|ZP_06664285.1| cold shock protein cspA [Escherichia coli B088] gi|298382928|ref|ZP_06992523.1| cold shock protein CspB [Escherichia coli FVEC1302] gi|300815217|ref|ZP_07095442.1| transcriptional repressor activity CueR [Escherichia coli MS 107-1] gi|300822041|ref|ZP_07102184.1| transcriptional repressor activity CueR [Escherichia coli MS 119-7] gi|300898732|ref|ZP_07117043.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300902747|ref|ZP_07120703.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300920437|ref|ZP_07136871.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300925632|ref|ZP_07141498.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|300928228|ref|ZP_07143767.1| transcriptional repressor activity CueR [Escherichia coli MS 187-1] gi|300937162|ref|ZP_07152015.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|300950904|ref|ZP_07164783.1| transcriptional repressor activity CueR [Escherichia coli MS 116-1] gi|300955049|ref|ZP_07167457.1| transcriptional repressor activity CueR [Escherichia coli MS 175-1] gi|300971382|ref|ZP_07171451.1| transcriptional repressor activity CueR [Escherichia coli MS 45-1] gi|300976956|ref|ZP_07173691.1| transcriptional repressor activity CueR [Escherichia coli MS 200-1] gi|301026237|ref|ZP_07189700.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|301028176|ref|ZP_07191447.1| transcriptional repressor activity CueR [Escherichia coli MS 196-1] gi|301047090|ref|ZP_07194190.1| transcriptional repressor activity CueR [Escherichia coli MS 185-1] gi|301304609|ref|ZP_07210718.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|301646011|ref|ZP_07245917.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|306816090|ref|ZP_07450228.1| major cold shock protein [Escherichia coli NC101] gi|307140246|ref|ZP_07499602.1| major cold shock protein [Escherichia coli H736] gi|307314309|ref|ZP_07593916.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|309787759|ref|ZP_07682370.1| cold shock-like protein cspG [Shigella dysenteriae 1617] gi|309796198|ref|ZP_07690609.1| transcriptional repressor activity CueR [Escherichia coli MS 145-7] gi|312968101|ref|ZP_07782312.1| cold shock-like protein cspG [Escherichia coli 2362-75] gi|312972169|ref|ZP_07786343.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|329999877|ref|ZP_08303546.1| cold shock protein [Klebsiella sp. MS 92-3] gi|331644267|ref|ZP_08345396.1| conserved domain protein [Escherichia coli H736] gi|331649387|ref|ZP_08350473.1| conserved domain protein [Escherichia coli M605] gi|331655193|ref|ZP_08356192.1| conserved domain protein [Escherichia coli M718] gi|331659872|ref|ZP_08360810.1| conserved domain protein [Escherichia coli TA206] gi|331665179|ref|ZP_08366080.1| conserved domain protein [Escherichia coli TA143] gi|331670390|ref|ZP_08371229.1| conserved domain protein [Escherichia coli TA271] gi|331675046|ref|ZP_08375803.1| conserved domain protein [Escherichia coli TA280] gi|331679637|ref|ZP_08380307.1| conserved domain protein [Escherichia coli H591] gi|331685219|ref|ZP_08385805.1| conserved domain protein [Escherichia coli H299] gi|332282124|ref|ZP_08394537.1| major cold shock protein [Shigella sp. D9] gi|76364240|sp|P0A9X9|CSPA_ECOLI RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|76364241|sp|P0A9Y5|CSPA_SALEN RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|76364242|sp|P0A9Y2|CSPA_SALTY RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|76364243|sp|P0A9Y4|CSPA_SHIFL RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|85687548|sp|P0A9Y1|CSPA_ECO57 RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|85687549|sp|P0A9Y0|CSPA_ECOL6 RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|85687550|sp|P0A9Y3|CSPA_SALTI RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4 gi|25296126|pir||AG0981 cold shock protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|306991504|pdb|2L15|A Chain A, Solution Structure Of Cold Shock Protein Cspa Using Combined Nmr And Cs-Rosetta Method gi|12518291|gb|AAG58705.1|AE005582_8 cold shock protein 7.4, transcriptional activator of hns [Escherichia coli O157:H7 str. EDL933] gi|26110628|gb|AAN82813.1|AE016768_231 Cold shock protein cspA [Escherichia coli CFT073] gi|145633|gb|AAA23617.1| cold shock protein (cspA) [Escherichia coli] gi|466694|gb|AAB18533.1| cold regulated [Escherichia coli str. K-12 substr. MG1655] gi|1789979|gb|AAC76580.1| RNA chaperone and anti-terminator, cold-inducible [Escherichia coli str. K-12 substr. MG1655] gi|2353338|gb|AAB69447.1| cold shock protein [Salmonella enterica subsp. enterica serovar Enteritidis] gi|2970683|gb|AAC06036.1| cold shock protein A [Salmonella enterica subsp. enterica serovar Typhimurium] gi|13363915|dbj|BAB37864.1| cold shock protein 7.4 [Escherichia coli O157:H7 str. Sakai] gi|16422214|gb|AAL22509.1| major cold shock protein 7.4 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504965|emb|CAD07979.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi] gi|24054054|gb|AAN45040.1| cold shock protein 7.4, transcriptional activator of hns [Shigella flexneri 2a str. 301] gi|29139783|gb|AAO71348.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30043427|gb|AAP19147.1| cold shock protein 7.4, transcriptional activator of hns [Shigella flexneri 2a str. 2457T] gi|56129800|gb|AAV79306.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129784|gb|AAX67487.1| Cold shock protein cspA (CSP-A) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|73857667|gb|AAZ90374.1| cold shock protein 7.4, transcriptional activator of hns [Shigella sonnei Ss046] gi|81243528|gb|ABB64238.1| cold shock protein 7.4 [Shigella dysenteriae Sd197] gi|81247332|gb|ABB68040.1| cold shock protein 7.4 [Shigella boydii Sb227] gi|85676489|dbj|BAE77739.1| major cold shock protein [Escherichia coli str. K12 substr. W3110] gi|91074644|gb|ABE09525.1| cold shock protein 7.4, transcriptional activator of hns [Escherichia coli UTI89] gi|110345396|gb|ABG71633.1| cold shock protein CspA [Escherichia coli 536] gi|110616900|gb|ABF05567.1| Cold shock protein cspA [Shigella flexneri 5 str. 8401] gi|150957275|gb|ABR79305.1| cold shock protein 7.4, transcriptional activator of hns [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157068711|gb|ABV07966.1| cold shock DNA-binding protein [Escherichia coli HS] gi|157077349|gb|ABV17057.1| cold shock DNA-binding protein [Escherichia coli E24377A] gi|157086377|gb|ABV16055.1| hypothetical protein CKO_05012 [Citrobacter koseri ATCC BAA-895] gi|161366080|gb|ABX69848.1| hypothetical protein SPAB_04535 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|169753143|gb|ACA75842.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|169890899|gb|ACB04606.1| major cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|170124280|gb|EDS93211.1| cold shock DNA-binding protein [Escherichia albertii TW07627] gi|170521454|gb|ACB19632.1| cold shock DNA-binding protein [Escherichia coli SMS-3-5] gi|187427598|gb|ACD06872.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94] gi|187771551|gb|EDU35395.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|188018410|gb|EDU56532.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|188488528|gb|EDU63631.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|189002424|gb|EDU71410.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|189358854|gb|EDU77273.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|189364591|gb|EDU83010.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|189369849|gb|EDU88265.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|189374634|gb|EDU93050.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|189379895|gb|EDU98311.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|190904736|gb|EDV64442.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|190909333|gb|EDV68919.1| cold shock DNA-binding protein [Escherichia coli F11] gi|192932605|gb|EDV85202.1| cold shock DNA-binding protein [Escherichia coli E22] gi|192958187|gb|EDV88628.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194401952|gb|ACF62174.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408523|gb|ACF68742.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194414523|gb|EDX30796.1| cold shock DNA-binding protein [Escherichia coli B171] gi|194420546|gb|EDX36622.1| cold shock DNA-binding protein [Shigella dysenteriae 1012] gi|194425248|gb|EDX41232.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|194456324|gb|EDX45163.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712445|gb|ACF91666.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197095947|emb|CAR61529.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212947|gb|ACH50344.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240721|gb|EDY23341.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291255|gb|EDY30607.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936368|gb|ACH73701.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603713|gb|EDZ02258.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321927|gb|EDZ07125.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274524|emb|CAR39563.1| cold shock protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325852|gb|EDZ13691.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330662|gb|EDZ17426.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333305|gb|EDZ20069.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338837|gb|EDZ25601.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344312|gb|EDZ31076.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350328|gb|EDZ36959.1| cold shock DNA-binding protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206564840|gb|ACI06616.1| cold shock-like protein CspA [Klebsiella pneumoniae 342] gi|206710689|emb|CAR35049.1| cold shock protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208726954|gb|EDZ76555.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208733457|gb|EDZ82144.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208742044|gb|EDZ89726.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209161765|gb|ACI39198.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209755208|gb|ACI75916.1| cold shock protein 7.4 [Escherichia coli] gi|209755210|gb|ACI75917.1| cold shock protein 7.4 [Escherichia coli] gi|209755212|gb|ACI75918.1| cold shock protein 7.4 [Escherichia coli] gi|209755214|gb|ACI75919.1| cold shock protein 7.4 [Escherichia coli] gi|209755216|gb|ACI75920.1| cold shock protein 7.4 [Escherichia coli] gi|209914280|dbj|BAG79354.1| cold shock protein [Escherichia coli SE11] gi|215266913|emb|CAS11356.1| major cold shock protein [Escherichia coli O127:H6 str. E2348/69] gi|217322736|gb|EEC31160.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|218354005|emb|CAV00495.1| major cold shock protein [Escherichia coli 55989] gi|218358383|emb|CAQ91030.1| major cold shock protein [Escherichia fergusonii ATCC 35469] gi|218362885|emb|CAR00519.1| major cold shock protein [Escherichia coli IAI1] gi|218367402|emb|CAR05184.1| major cold shock protein [Escherichia coli S88] gi|218372307|emb|CAR20172.1| major cold shock protein [Escherichia coli IAI39] gi|218429411|emb|CAR10372.2| major cold shock protein [Escherichia coli ED1a] gi|218434288|emb|CAR15210.1| major cold shock protein [Escherichia coli UMN026] gi|222035271|emb|CAP78016.1| Cold shock protein cspA [Escherichia coli LF82] gi|224469977|gb|ACN47807.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|226839246|gb|EEH71269.1| major cold shock protein [Escherichia sp. 1_1_43] gi|226902591|gb|EEH88850.1| major cold shock protein [Escherichia sp. 3_2_53FAA] gi|226909493|gb|EEH95411.1| major cold shock protein [Citrobacter sp. 30_2] gi|227839303|gb|EEJ49769.1| major cold shock protein [Escherichia coli 83972] gi|238549347|dbj|BAH65698.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|238861704|gb|ACR63702.1| major cold shock protein [Escherichia coli BW2952] gi|242379073|emb|CAQ33874.1| CspA transcriptional activator [Escherichia coli BL21(DE3)] gi|253322654|gb|ACT27256.1| cold-shock DNA-binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975380|gb|ACT41051.1| major cold shock protein [Escherichia coli B str. REL606] gi|253979536|gb|ACT45206.1| major cold shock protein [Escherichia coli BL21(DE3)] gi|254594913|gb|ACT74274.1| major cold shock protein [Escherichia coli O157:H7 str. TW14359] gi|257756697|dbj|BAI28199.1| major cold shock protein CspA [Escherichia coli O26:H11 str. 11368] gi|257761876|dbj|BAI33373.1| major cold shock protein CspA [Escherichia coli O103:H2 str. 12009] gi|257766643|dbj|BAI38138.1| major cold shock protein CspA [Escherichia coli O111:H- str. 11128] gi|260447428|gb|ACX37850.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|261248799|emb|CBG26652.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995899|gb|ACY90784.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|281180601|dbj|BAI56931.1| cold shock protein [Escherichia coli SE15] gi|281602915|gb|ADA75899.1| Cold-shock DNA-binding protein family [Shigella flexneri 2002017] gi|284923590|emb|CBG36686.1| cold shock protein [Escherichia coli 042] gi|288887797|gb|ADC56115.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|289775652|gb|EFD83652.1| cold shock protein cspA [Klebsiella sp. 1_1_55] gi|290764806|gb|ADD58767.1| Cold shock protein cspA [Escherichia coli O55:H7 str. CB9615] gi|291068112|gb|EFE06221.1| putative cold shock protein [Citrobacter youngae ATCC 29220] gi|291321992|gb|EFE61423.1| cold shock protein cspA [Escherichia coli B088] gi|291425990|gb|EFE99024.1| cold shock protein CspB [Escherichia coli FVEC1412] gi|291431581|gb|EFF04566.1| cold shock protein cspA [Escherichia coli B185] gi|291468638|gb|EFF11131.1| cold shock protein cspA [Escherichia coli B354] gi|294490956|gb|ADE89712.1| cold shock DNA-binding protein [Escherichia coli IHE3034] gi|298276764|gb|EFI18282.1| cold shock protein CspB [Escherichia coli FVEC1302] gi|299878753|gb|EFI86964.1| transcriptional repressor activity CueR [Escherichia coli MS 196-1] gi|300300977|gb|EFJ57362.1| transcriptional repressor activity CueR [Escherichia coli MS 185-1] gi|300308426|gb|EFJ62946.1| transcriptional repressor activity CueR [Escherichia coli MS 200-1] gi|300318019|gb|EFJ67803.1| transcriptional repressor activity CueR [Escherichia coli MS 175-1] gi|300357611|gb|EFJ73481.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300395621|gb|EFJ79159.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|300405208|gb|EFJ88746.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300411306|gb|EFJ94844.1| transcriptional repressor activity CueR [Escherichia coli MS 45-1] gi|300412570|gb|EFJ95880.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300418272|gb|EFK01583.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|300449807|gb|EFK13427.1| transcriptional repressor activity CueR [Escherichia coli MS 116-1] gi|300457748|gb|EFK21241.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|300463773|gb|EFK27266.1| transcriptional repressor activity CueR [Escherichia coli MS 187-1] gi|300525404|gb|EFK46473.1| transcriptional repressor activity CueR [Escherichia coli MS 119-7] gi|300532109|gb|EFK53171.1| transcriptional repressor activity CueR [Escherichia coli MS 107-1] gi|300840087|gb|EFK67847.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|301075763|gb|EFK90569.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|305850486|gb|EFM50943.1| major cold shock protein [Escherichia coli NC101] gi|306906024|gb|EFN36544.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|307555662|gb|ADN48437.1| cold shock protein CspA [Escherichia coli ABU 83972] gi|307628638|gb|ADN72942.1| major cold shock protein [Escherichia coli UM146] gi|308120259|gb|EFO57521.1| transcriptional repressor activity CueR [Escherichia coli MS 145-7] gi|308924509|gb|EFP70005.1| cold shock-like protein cspG [Shigella dysenteriae 1617] gi|310334546|gb|EFQ00751.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|312287360|gb|EFR15269.1| cold shock-like protein cspG [Escherichia coli 2362-75] gi|312914675|dbj|BAJ38649.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312948122|gb|ADR28949.1| major cold shock protein [Escherichia coli O83:H1 str. NRG 857C] gi|313647586|gb|EFS12036.1| cold shock-like protein cspG [Shigella flexneri 2a str. 2457T] gi|315062841|gb|ADT77168.1| major cold shock protein [Escherichia coli W] gi|315138132|dbj|BAJ45291.1| cold shock protein cspA [Escherichia coli DH1] gi|315254086|gb|EFU34054.1| transcriptional repressor activity CueR [Escherichia coli MS 85-1] gi|315285298|gb|EFU44743.1| transcriptional repressor activity CueR [Escherichia coli MS 110-3] gi|315294135|gb|EFU53487.1| transcriptional repressor activity CueR [Escherichia coli MS 153-1] gi|315300090|gb|EFU59328.1| transcriptional repressor activity CueR [Escherichia coli MS 16-3] gi|315618408|gb|EFU98995.1| cold shock-like protein cspG [Escherichia coli 3431] gi|320088070|emb|CBY97832.1| Cold shock-like protein cspG CPS-G [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|320177195|gb|EFW52205.1| Cold shock protein CspA [Shigella dysenteriae CDC 74-1112] gi|320182073|gb|EFW56978.1| Cold shock protein CspA [Shigella boydii ATCC 9905] gi|320187079|gb|EFW61787.1| Cold shock protein CspA [Shigella flexneri CDC 796-83] gi|320191387|gb|EFW66037.1| Cold shock protein CspA [Escherichia coli O157:H7 str. EC1212] gi|320193931|gb|EFW68564.1| Cold shock protein CspA [Escherichia coli WV_060327] gi|320201422|gb|EFW76003.1| Cold shock protein CspA [Escherichia coli EC4100B] gi|320639877|gb|EFX09471.1| RNA chaperone/anti-terminator [Escherichia coli O157:H7 str. G5101] gi|320645040|gb|EFX14064.1| RNA chaperone/anti-terminator [Escherichia coli O157:H- str. 493-89] gi|320650307|gb|EFX18790.1| RNA chaperone/anti-terminator [Escherichia coli O157:H- str. H 2687] gi|320655882|gb|EFX23805.1| RNA chaperone/anti-terminator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661662|gb|EFX29077.1| RNA chaperone/anti-terminator [Escherichia coli O55:H7 str. USDA 5905] gi|320666686|gb|EFX33669.1| RNA chaperone/anti-terminator [Escherichia coli O157:H7 str. LSU-61] gi|321226705|gb|EFX51755.1| Cold shock protein CspA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613962|gb|EFY10898.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620331|gb|EFY17199.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625336|gb|EFY22163.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629997|gb|EFY26770.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634187|gb|EFY30922.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635912|gb|EFY32621.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643170|gb|EFY39744.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644609|gb|EFY41145.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650851|gb|EFY47243.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652985|gb|EFY49320.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659948|gb|EFY56188.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663281|gb|EFY59485.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668767|gb|EFY64920.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674430|gb|EFY70523.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678362|gb|EFY74423.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680868|gb|EFY76902.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687196|gb|EFY83169.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716639|gb|EFZ08210.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132010|gb|ADX19440.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323153885|gb|EFZ40119.1| cold shock-like protein cspG [Escherichia coli EPECa14] gi|323166951|gb|EFZ52690.1| cold shock-like protein cspG [Shigella sonnei 53G] gi|323174215|gb|EFZ59843.1| cold shock-like protein cspG [Escherichia coli LT-68] gi|323182712|gb|EFZ68114.1| cold shock-like protein cspG [Escherichia coli 1357] gi|323189283|gb|EFZ74566.1| cold shock-like protein cspG [Escherichia coli RN587/1] gi|323192155|gb|EFZ77388.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200659|gb|EFZ85733.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201369|gb|EFZ86435.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206769|gb|EFZ91723.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211801|gb|EFZ96633.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216160|gb|EGA00888.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220383|gb|EGA04837.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226240|gb|EGA10455.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228360|gb|EGA12491.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234181|gb|EGA18269.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237166|gb|EGA21233.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244685|gb|EGA28689.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249166|gb|EGA33084.1| RNA chaperone/anti-terminator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250715|gb|EGA34595.1| RNA chaperone/anti-terminator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257590|gb|EGA41277.1| RNA chaperone/anti-terminator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262299|gb|EGA45860.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266146|gb|EGA49637.1| RNA chaperone/anti-terminator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268781|gb|EGA52239.1| RNA chaperone/anti-terminator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323376568|gb|ADX48836.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323934742|gb|EGB31129.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1520] gi|323939545|gb|EGB35753.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323944546|gb|EGB40617.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323949800|gb|EGB45684.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H252] gi|323954899|gb|EGB50679.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H263] gi|323959439|gb|EGB55098.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H489] gi|323966026|gb|EGB61467.1| cold-shock DNA-binding domain-containing protein [Escherichia coli M863] gi|323971361|gb|EGB66602.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|323975031|gb|EGB70140.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TW10509] gi|324007334|gb|EGB76553.1| transcriptional repressor activity CueR [Escherichia coli MS 57-2] gi|324014208|gb|EGB83427.1| transcriptional repressor activity CueR [Escherichia coli MS 60-1] gi|324021129|gb|EGB90348.1| transcriptional repressor activity CueR [Escherichia coli MS 117-3] gi|324111895|gb|EGC05875.1| cold-shock DNA-binding domain-containing protein [Escherichia fergusonii B253] gi|324116564|gb|EGC10481.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1167] gi|325499116|gb|EGC96975.1| major cold shock protein [Escherichia fergusonii ECD227] gi|326337439|gb|EGD61274.1| Cold shock protein CspA [Escherichia coli O157:H7 str. 1044] gi|326339964|gb|EGD63771.1| Cold shock protein CspA [Escherichia coli O157:H7 str. 1125] gi|326625395|gb|EGE31740.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629882|gb|EGE36225.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|327251207|gb|EGE62900.1| cold shock-like protein cspG [Escherichia coli STEC_7v] gi|328538186|gb|EGF64339.1| cold shock protein [Klebsiella sp. MS 92-3] gi|330909619|gb|EGH38133.1| cold shock protein CspA [Escherichia coli AA86] gi|331036561|gb|EGI08787.1| conserved domain protein [Escherichia coli H736] gi|331041885|gb|EGI14029.1| conserved domain protein [Escherichia coli M605] gi|331047208|gb|EGI19286.1| conserved domain protein [Escherichia coli M718] gi|331053087|gb|EGI25120.1| conserved domain protein [Escherichia coli TA206] gi|331057689|gb|EGI29675.1| conserved domain protein [Escherichia coli TA143] gi|331062452|gb|EGI34372.1| conserved domain protein [Escherichia coli TA271] gi|331067955|gb|EGI39353.1| conserved domain protein [Escherichia coli TA280] gi|331072809|gb|EGI44134.1| conserved domain protein [Escherichia coli H591] gi|331077590|gb|EGI48802.1| conserved domain protein [Escherichia coli H299] gi|332085082|gb|EGI90262.1| cold shock-like protein cspG [Shigella boydii 5216-82] gi|332085822|gb|EGI90986.1| cold shock-like protein cspG [Shigella dysenteriae 155-74] gi|332089367|gb|EGI94471.1| cold shock-like protein cspG [Shigella boydii 3594-74] gi|332104476|gb|EGJ07822.1| major cold shock protein [Shigella sp. D9] gi|332345523|gb|AEE58857.1| cold shock-like protein CspG [Escherichia coli UMNK88] gi|332750008|gb|EGJ80420.1| cold shock-like protein cspG [Shigella flexneri K-671] gi|332750165|gb|EGJ80576.1| cold shock-like protein cspG [Shigella flexneri 4343-70] gi|332751185|gb|EGJ81588.1| cold shock-like protein cspG [Shigella flexneri 2747-71] gi|332763435|gb|EGJ93674.1| cspA transcriptional activator [Shigella flexneri 2930-71] gi|332990500|gb|AEF09483.1| major cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] gi|332996874|gb|EGK16493.1| cold shock-like protein cspG [Shigella flexneri K-272] gi|332997304|gb|EGK16920.1| cold shock-like protein cspG [Shigella flexneri K-218] gi|333012564|gb|EGK31945.1| cold shock-like protein cspG [Shigella flexneri K-304] gi|333013441|gb|EGK32813.1| cold shock-like protein cspG [Shigella flexneri K-227] Length = 70 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H SA+ + G +L EGQ V++ ++ A G Sbjct: 6 TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 61 Query: 64 KYSAENLK 71 +A N+ Sbjct: 62 P-AAGNVT 68 >gi|323934238|gb|EGB30662.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1520] Length = 71 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFNSDKGFGFISP---ADGSKDVFVHFSAIQSNNFRTLEEGQQVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVVAL 70 >gi|296134263|ref|YP_003641510.1| cold-shock DNA-binding domain protein [Thermincola sp. JR] gi|296032841|gb|ADG83609.1| cold-shock DNA-binding domain protein [Thermincola potens JR] Length = 65 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E G DVF+H SA+ G L EGQ V ++ V+ A G Sbjct: 3 GKVKWFNQEKGFGFIERE----DGGDVFVHFSAIQEEGFKTLAEGQEVEFEIVEG-ARGP 57 Query: 65 YSAENLKL 72 +A +KL Sbjct: 58 QAANVVKL 65 >gi|293395718|ref|ZP_06640000.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291421655|gb|EFE94902.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 69 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP + DVF+H SA+ S G L EGQ V + Q+ G Sbjct: 5 TGHVKWFNESKGFGFITP---ADGSKDVFVHFSAIVSDGFKTLAEGQQVEFSI-QDSQRG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 PAAANVVAI 69 >gi|238794631|ref|ZP_04638237.1| Cold shock-like protein cspB [Yersinia intermedia ATCC 29909] gi|238726020|gb|EEQ17568.1| Cold shock-like protein cspB [Yersinia intermedia ATCC 29909] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + +N A G Sbjct: 2 TGLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ENGAKG 57 Query: 64 KYSAENLKL 72 +A + L Sbjct: 58 PAAANVIAL 66 >gi|108799262|ref|YP_639459.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. MCS] gi|119868378|ref|YP_938330.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. KMS] gi|126434920|ref|YP_001070611.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. JLS] gi|108769681|gb|ABG08403.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS] gi|119694467|gb|ABL91540.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS] gi|126234720|gb|ABN98120.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+G DDVF+H S + G +L E Q V ++ Q A Sbjct: 1 MTQGTVKWFNSEKGFGFIAPDG---GSDDVFVHYSEIQGGGFRSLEENQRVEFEIGQG-A 56 Query: 62 NGKYSAENLKL 72 G + + Sbjct: 57 KGPQATSVTAI 67 >gi|229916626|ref|YP_002885272.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b] gi|229468055|gb|ACQ69827.1| cold-shock DNA-binding domain protein [Exiguobacterium sp. AT1b] Length = 65 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E G DVF+H SA+ S G +L EGQ V ++ V + G Sbjct: 3 GKVKWFNSEKGFGFIEVE----GGKDVFVHFSAIQSEGYKSLDEGQDVEFEIV-DGERGP 57 Query: 65 YSAENLKL 72 +A +KL Sbjct: 58 QAANVVKL 65 >gi|42780794|ref|NP_978041.1| cold shock protein CspB [Bacillus cereus ATCC 10987] gi|47566079|ref|ZP_00237117.1| cold shock protein-related protein [Bacillus cereus G9241] gi|52143761|ref|YP_083069.1| cold shock protein [Bacillus cereus E33L] gi|206974820|ref|ZP_03235735.1| cold shock protein CspB [Bacillus cereus H3081.97] gi|217959179|ref|YP_002337727.1| cold shock protein CspB [Bacillus cereus AH187] gi|222095321|ref|YP_002529381.1| cold shock protein [Bacillus cereus Q1] gi|228984782|ref|ZP_04144954.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229090659|ref|ZP_04221892.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42] gi|229138395|ref|ZP_04266986.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26] gi|229155270|ref|ZP_04283381.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342] gi|229195910|ref|ZP_04322664.1| Cold shock-like protein cspB [Bacillus cereus m1293] gi|300117378|ref|ZP_07055168.1| cold shock protein CspB [Bacillus cereus SJ1] gi|42736714|gb|AAS40649.1| cold shock protein CspB [Bacillus cereus ATCC 10987] gi|47556996|gb|EAL15326.1| cold shock protein-related protein [Bacillus cereus G9241] gi|51977230|gb|AAU18780.1| cold shock protein [Bacillus cereus E33L] gi|206746839|gb|EDZ58231.1| cold shock protein CspB [Bacillus cereus H3081.97] gi|217064802|gb|ACJ79052.1| cold shock protein CspB [Bacillus cereus AH187] gi|221239379|gb|ACM12089.1| cold shock protein [Bacillus cereus Q1] gi|228587552|gb|EEK45616.1| Cold shock-like protein cspB [Bacillus cereus m1293] gi|228628195|gb|EEK84911.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342] gi|228645066|gb|EEL01307.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26] gi|228692601|gb|EEL46327.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42] gi|228774980|gb|EEM23374.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|298725213|gb|EFI65865.1| cold shock protein CspB [Bacillus cereus SJ1] gi|324325719|gb|ADY20979.1| cold shock protein CspB [Bacillus thuringiensis serovar finitimus YBT-020] Length = 65 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIE----IEGADDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|317047537|ref|YP_004115185.1| cold-shock DNA-binding domain-containing protein [Pantoea sp. At-9b] gi|316949154|gb|ADU68629.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b] Length = 73 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D + Sbjct: 1 METGTVKWFNNAKGFGFICPIG---GGDDIFAHYSTIQMEGYRTLKAGQQVQFDVHEGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|218898929|ref|YP_002447340.1| hypothetical protein BCG9842_B1369 [Bacillus cereus G9842] gi|218545380|gb|ACK97774.1| conserved domain protein [Bacillus cereus G9842] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ VT++ Q Sbjct: 1 MEQGKVKWFNAEKGFGFIERE----GGEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--LQATNVQ 64 >gi|92112880|ref|YP_572808.1| cold-shock DNA-binding protein family protein [Chromohalobacter salexigens DSM 3043] gi|91795970|gb|ABE58109.1| cold-shock DNA-binding protein family [Chromohalobacter salexigens DSM 3043] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P E GDD+F+H S + + G +L +GQ V++D Q Sbjct: 1 MATGTVKWFNDAKGFGFISP---AEGGDDLFVHFSEIQAEGFKSLQDGQEVSFDVTQGKK 57 Query: 62 NGKYSAENLK 71 A N+K Sbjct: 58 G--LQASNVK 65 >gi|37525256|ref|NP_928600.1| cold shock protein CspE [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784683|emb|CAE13583.1| cold shock-like protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 70 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 6/74 (8%) Query: 1 MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M+ + G++KW+N KG+GFITPE + DVF+H SA+ G L EGQ V ++ Sbjct: 1 MMSKIKGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQITGFKTLAEGQKVEFEIT- 56 Query: 59 NDANGKYSAENLKL 72 + A G + + + Sbjct: 57 DGAKGPSAVNVVAI 70 >gi|84387543|ref|ZP_00990561.1| putative Cold shock-like protein [Vibrio splendidus 12B01] gi|86144453|ref|ZP_01062785.1| putative Cold shock-like protein [Vibrio sp. MED222] gi|84377591|gb|EAP94456.1| putative Cold shock-like protein [Vibrio splendidus 12B01] gi|85837352|gb|EAQ55464.1| putative Cold shock-like protein [Vibrio sp. MED222] Length = 70 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + G++KW+N +KG+GFI+ + G DVF+H A+AS G L EGQ V+++ V+N Sbjct: 5 NTGTVKWFNEEKGFGFISQD---NGGADVFVHFRAIASEGFKTLKEGQKVSFE-VENGQK 60 Query: 63 GKYSAENL 70 G +A + Sbjct: 61 GLQAANVV 68 >gi|319651116|ref|ZP_08005249.1| cold shock protein [Bacillus sp. 2_A_57_CT2] gi|317397170|gb|EFV77875.1| cold shock protein [Bacillus sp. 2_A_57_CT2] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ + G L EGQ V +D Q Sbjct: 1 MATGKVKWFNSEKGFGFIEVE----GGEDVFVHYSAIQTEGFKTLDEGQEVNFDIEQGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--PQAVNVTKL 66 >gi|326789293|ref|YP_004307114.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] gi|326540057|gb|ADZ81916.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] Length = 65 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI+ E GDDVF+H SA+ G +L EGQ V +D + Sbjct: 2 TGTVKWFNAEKGFGFISRE----DGDDVFVHFSAIQGDGFKSLDEGQRVNFDITKGARG- 56 Query: 64 KYSAENLK 71 AEN+ Sbjct: 57 -AQAENVT 63 >gi|186474439|ref|YP_001863410.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184198398|gb|ACC76360.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + G+D+F H S + + G +L E Q V++D V+ Sbjct: 1 MATGTVKWFNDAKGFGFITPD---DGGEDLFAHFSEIKTEGFKSLQENQKVSFD-VKMGP 56 Query: 62 NGKYSAENLKLV 73 GK +A N+K V Sbjct: 57 KGKQAA-NIKPV 67 >gi|15641155|ref|NP_230787.1| cold shock-like protein CspD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587431|ref|ZP_01677200.1| cold shock-like protein CspD [Vibrio cholerae 2740-80] gi|121726283|ref|ZP_01679573.1| cold shock-like protein CspD [Vibrio cholerae V52] gi|147674134|ref|YP_001216662.1| cold shock-like protein CspD [Vibrio cholerae O395] gi|153214227|ref|ZP_01949262.1| cold shock-like protein CspD [Vibrio cholerae 1587] gi|153802582|ref|ZP_01957168.1| cold shock-like protein CspD [Vibrio cholerae MZO-3] gi|153816958|ref|ZP_01969625.1| cold shock-like protein CspD [Vibrio cholerae NCTC 8457] gi|153822008|ref|ZP_01974675.1| cold shock-like protein CspD [Vibrio cholerae B33] gi|153826040|ref|ZP_01978707.1| cold shock-like protein CspD [Vibrio cholerae MZO-2] gi|153828664|ref|ZP_01981331.1| cold shock-like protein CspD [Vibrio cholerae 623-39] gi|227081315|ref|YP_002809866.1| cold shock-like protein CspD [Vibrio cholerae M66-2] gi|254291567|ref|ZP_04962357.1| cold shock-like protein CspD [Vibrio cholerae AM-19226] gi|254848270|ref|ZP_05237620.1| cold shock-like protein CspD [Vibrio cholerae MO10] gi|297578744|ref|ZP_06940672.1| predicted protein [Vibrio cholerae RC385] gi|298498753|ref|ZP_07008560.1| cold shock domain-containing protein CspD [Vibrio cholerae MAK 757] gi|20138015|sp|Q9KSW4|CSPD_VIBCH RecName: Full=Cold shock-like protein CspD gi|9655615|gb|AAF94301.1| cold shock-like protein CspD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548351|gb|EAX58415.1| cold shock-like protein CspD [Vibrio cholerae 2740-80] gi|121631229|gb|EAX63602.1| cold shock-like protein CspD [Vibrio cholerae V52] gi|124115476|gb|EAY34296.1| cold shock-like protein CspD [Vibrio cholerae 1587] gi|124121896|gb|EAY40639.1| cold shock-like protein CspD [Vibrio cholerae MZO-3] gi|126512545|gb|EAZ75139.1| cold shock-like protein CspD [Vibrio cholerae NCTC 8457] gi|126520473|gb|EAZ77696.1| cold shock-like protein CspD [Vibrio cholerae B33] gi|146316017|gb|ABQ20556.1| cold shock-like protein CspD [Vibrio cholerae O395] gi|148875817|gb|EDL73952.1| cold shock-like protein CspD [Vibrio cholerae 623-39] gi|149740260|gb|EDM54407.1| cold shock-like protein CspD [Vibrio cholerae MZO-2] gi|150422519|gb|EDN14476.1| cold shock-like protein CspD [Vibrio cholerae AM-19226] gi|227009203|gb|ACP05415.1| cold shock-like protein CspD [Vibrio cholerae M66-2] gi|227013009|gb|ACP09219.1| cold shock-like protein CspD [Vibrio cholerae O395] gi|254843975|gb|EET22389.1| cold shock-like protein CspD [Vibrio cholerae MO10] gi|297536338|gb|EFH75171.1| predicted protein [Vibrio cholerae RC385] gi|297543086|gb|EFH79136.1| cold shock domain-containing protein CspD [Vibrio cholerae MAK 757] Length = 76 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG D+F H S + G L GQ V+Y Q Sbjct: 4 MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMDGYRTLKAGQQVSYQVEQG-P 59 Query: 62 NGKYSAENLKLVPKSSN 78 G +++ + + +S+ Sbjct: 60 KGYHASCVVPIEGQSAK 76 >gi|310816002|ref|YP_003963966.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium vulgare Y25] gi|308754737|gb|ADO42666.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium vulgare Y25] Length = 68 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE DVF+H S++ +G+ +L +GQ V++D + Sbjct: 1 MANGTVKWFNATKGFGFIAPES---GSKDVFVHISSMQRSGISDLADGQKVSFDIEEG-R 56 Query: 62 NGKYSAENLKL 72 +G+ +A N+ L Sbjct: 57 DGRENAINITL 67 >gi|300779976|ref|ZP_07089832.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030] gi|300534086|gb|EFK55145.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+ + DVF+H S + +G L E Q V ++ + Sbjct: 1 MATGTVKWFNAEKGFGFIAPD---DGSSDVFVHYSEIQGSGFRTLEENQQVEFEIGEGSK 57 Query: 62 NGKYSAENLKLV 73 A+ ++ + Sbjct: 58 G--PQAQQVRAL 67 >gi|291326366|ref|ZP_06124240.2| conserved domain protein [Providencia rettgeri DSM 1131] gi|291314630|gb|EFE55083.1| conserved domain protein [Providencia rettgeri DSM 1131] Length = 77 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + +N A G Sbjct: 13 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQQVEFTI-ENGAKG 68 Query: 64 KYSAENLKL 72 +A + Sbjct: 69 PAAANVTAI 77 >gi|126698954|ref|YP_001087851.1| putative cold shock protein [Clostridium difficile 630] gi|254974900|ref|ZP_05271372.1| putative cold shock protein [Clostridium difficile QCD-66c26] gi|255092289|ref|ZP_05321767.1| putative cold shock protein [Clostridium difficile CIP 107932] gi|255100373|ref|ZP_05329350.1| putative cold shock protein [Clostridium difficile QCD-63q42] gi|255306315|ref|ZP_05350486.1| putative cold shock protein [Clostridium difficile ATCC 43255] gi|255314027|ref|ZP_05355610.1| putative cold shock protein [Clostridium difficile QCD-76w55] gi|255516707|ref|ZP_05384383.1| putative cold shock protein [Clostridium difficile QCD-97b34] gi|255649806|ref|ZP_05396708.1| putative cold shock protein [Clostridium difficile QCD-37x79] gi|255655364|ref|ZP_05400773.1| putative cold shock protein [Clostridium difficile QCD-23m63] gi|260682964|ref|YP_003214249.1| putative cold shock protein [Clostridium difficile CD196] gi|260686562|ref|YP_003217695.1| putative cold shock protein [Clostridium difficile R20291] gi|296451352|ref|ZP_06893090.1| cold shock protein CspA [Clostridium difficile NAP08] gi|296880298|ref|ZP_06904263.1| cold shock protein CspA [Clostridium difficile NAP07] gi|306519907|ref|ZP_07406254.1| putative cold shock protein [Clostridium difficile QCD-32g58] gi|115250391|emb|CAJ68213.1| Cold shock protein CspB [Clostridium difficile] gi|260209127|emb|CBA62316.1| putative cold shock protein [Clostridium difficile CD196] gi|260212578|emb|CBE03568.1| putative cold shock protein [Clostridium difficile R20291] gi|296259768|gb|EFH06625.1| cold shock protein CspA [Clostridium difficile NAP08] gi|296428741|gb|EFH14623.1| cold shock protein CspA [Clostridium difficile NAP07] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI+ EG DVF+H SA+ G L EGQ V ++ V + A Sbjct: 1 MKTGVVKWFNNEKGFGFISVEGEG----DVFVHFSAITGDGYKTLEEGQSVEFEVV-DGA 55 Query: 62 NGKYSAENLKL 72 G +A ++L Sbjct: 56 KGPQAANVVRL 66 >gi|331702398|ref|YP_004399357.1| cold-shock DNA-binding domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129741|gb|AEB74294.1| cold-shock DNA-binding domain protein [Lactobacillus buchneri NRRL B-30929] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKGYGFIT + DVF+H SA+ G +L EGQ VT D V++ Sbjct: 1 MKQGTVKWFNADKGYGFITTDDG-----DVFVHFSAINKDGFKSLDEGQKVTLD-VEDSD 54 Query: 62 NGKYSAENLKL 72 G +A + Sbjct: 55 RGPQAANVTPI 65 >gi|259418300|ref|ZP_05742218.1| conserved domain protein [Silicibacter sp. TrichCH4B] gi|259345695|gb|EEW57539.1| conserved domain protein [Silicibacter sp. TrichCH4B] Length = 68 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ E G DVF+H SAV +GL L + Q V Y+ + Sbjct: 1 MPTGTVKWFNTTKGYGFIEPD---EGGKDVFVHISAVERSGLTGLADNQKVGYELSEG-R 56 Query: 62 NGKYSAENLKLV 73 +G+ A +++ + Sbjct: 57 DGRQMAGDIRPL 68 >gi|209520217|ref|ZP_03268987.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|209499333|gb|EDZ99418.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ GDD+F H S ++ G L E Q V+Y+ + Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---NGGDDLFAHFSEISGDGFKTLAENQKVSYE-TKRGP 56 Query: 62 NGKYSAENLKLV 73 G +A N+K + Sbjct: 57 KGLQAA-NIKPL 67 >gi|159576908|dbj|BAF92769.1| hypothetical protein [Photobacterium phosphoreum] Length = 70 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 6 TGLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 LQAANVVAL 70 >gi|33592839|ref|NP_880483.1| cold shock-like protein [Bordetella pertussis Tohama I] gi|33572487|emb|CAE42059.1| cold shock-like protein [Bordetella pertussis Tohama I] gi|332382252|gb|AEE67099.1| cold shock-like protein [Bordetella pertussis CS] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI P+ + D+F H S + S G +L E Q V+++ Q Sbjct: 1 MATGIVKWFNAEKGYGFIMPD---DGSKDLFAHYSEICSEGYKSLQENQRVSFEVGQGPK 57 Query: 62 NGKYSA 67 + A Sbjct: 58 GPRGQA 63 >gi|213970046|ref|ZP_03398178.1| cold shock domain family protein [Pseudomonas syringae pv. tomato T1] gi|213925150|gb|EEB58713.1| cold shock domain family protein [Pseudomonas syringae pv. tomato T1] Length = 89 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G +D+F H SA+ G L GQ V ++ +Q Sbjct: 1 MLNGKVKWFNNAKGYGFILEDGKPN--EDLFAHYSAIQMDGYKTLKAGQSVRFEIIQGPK 58 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 59 G--LHAVNIQ 66 >gi|205373573|ref|ZP_03226376.1| CspB [Bacillus coahuilensis m4-4] Length = 65 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI EG DDVF+H SA+ G +L EGQ V+++ V+ + Sbjct: 1 MLQGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKSLEEGQEVSFEIVEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|157369958|ref|YP_001477947.1| cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] gi|238753509|ref|ZP_04614872.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473] gi|157321722|gb|ABV40819.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] gi|238708462|gb|EEQ00817.1| Cold shock-like protein cspE [Yersinia ruckeri ATCC 29473] Length = 69 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y V++ Sbjct: 4 KTGQVKWFNESKGFGFIEQ---NDGGKDVFVHFSAIATDGFKTLAEGQRVEY-TVEDSPR 59 Query: 63 GKYSAENLKL 72 G +A + L Sbjct: 60 GPAAANVVAL 69 >gi|326439837|ref|ZP_08214571.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 1 MAQGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELREGQRVSFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|148234211|ref|NP_001091131.1| hypothetical protein LOC100036881 [Xenopus laevis] gi|120538253|gb|AAI29585.1| LOC100036881 protein [Xenopus laevis] Length = 131 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 3/68 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G+ KW+N +KGYGF+TP+ + D+F+H+S + + G +L EG+ V + + ++ +G Sbjct: 5 TGTCKWFNAEKGYGFLTPD---DGSPDIFVHQSTIHADGFRSLAEGEPVEFSVITDERSG 61 Query: 64 KYSAENLK 71 K A ++ Sbjct: 62 KLKAADVT 69 >gi|293606144|ref|ZP_06688509.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292815599|gb|EFF74715.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 68 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI P+ + D+F H S + S G +L E Q VT++ Sbjct: 1 MATGIVKWFNAEKGYGFIMPD---DGSKDLFAHYSEIRSEGYKSLQENQRVTFEVGTGPK 57 Query: 62 NGKYSAENLKL 72 SA+N+K+ Sbjct: 58 G--PSAKNIKV 66 >gi|228905155|ref|ZP_04069162.1| hypothetical protein bthur0014_62460 [Bacillus thuringiensis IBL 4222] gi|229077228|ref|ZP_04209922.1| hypothetical protein bcere0024_58750 [Bacillus cereus Rock4-18] gi|228706059|gb|EEL58354.1| hypothetical protein bcere0024_58750 [Bacillus cereus Rock4-18] gi|228854477|gb|EEM99128.1| hypothetical protein bthur0014_62460 [Bacillus thuringiensis IBL 4222] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N DKG+GFI E G+DVF+H SA+ G +L EGQ VT++ Q Sbjct: 1 MEQGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--LQATNVQ 64 >gi|205374414|ref|ZP_03227211.1| cold shock protein [Bacillus coahuilensis m4-4] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ VT+D + + Sbjct: 1 MNTGKVKWFNAEKGFGFIEVE----GGDDVFVHFSAIQGEGFKTLEEGQSVTFDIEEGNR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--PQATNV 63 >gi|161505814|ref|YP_001572926.1| major cold shock protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867161|gb|ABX23784.1| hypothetical protein SARI_03990 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 70 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H SA+ + G +L EGQ V++ ++ A G Sbjct: 6 TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 61 Query: 64 KYSAENL 70 +A N+ Sbjct: 62 P-AAGNV 67 >gi|95929274|ref|ZP_01312018.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] gi|95134772|gb|EAT16427.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + +G DVF+H S + G +L EG+ VT++ + Sbjct: 1 MAEGTVKWFNDAKGFGFIEQD----NGPDVFVHFSEIQGDGFKSLAEGERVTFEIT-DGQ 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 KGPQAANVVK 65 >gi|312880812|ref|ZP_07740612.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM 12260] gi|310784103|gb|EFQ24501.1| cold-shock DNA-binding protein family [Aminomonas paucivorans DSM 12260] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N KGYGFIT T+ G DVF H SA+ G L EG V+ D V+ Sbjct: 1 MATQGTVKWFNATKGYGFIT----TDEGRDVFCHFSAIKMDGYKALDEGVRVSLD-VEMG 55 Query: 61 ANGKYSAENLKL 72 G+ +A +KL Sbjct: 56 PKGEQAANVVKL 67 >gi|307331134|ref|ZP_07610261.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306883214|gb|EFN14273.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 69 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI E + G DVF+H S++ +G +L + Q V + VQ Sbjct: 1 MAQGTVKWFNAEKGYGFIAQE---DGGPDVFVHYSSIDGSGYRSLVDEQRVEFQIVQGRK 57 Query: 62 NGKYSAENLKLV 73 AE ++++ Sbjct: 58 G--PQAEEVRIL 67 >gi|253990328|ref|YP_003041684.1| cold shock-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781778|emb|CAQ84941.1| cold shock-like protein cspd (csp-d) [Photorhabdus asymbiotica] Length = 73 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G+D+F H S + G L GQ V + Q Sbjct: 1 METGTVKWFNNAKGFGFICP---ASGGEDIFAHYSTIQMDGYRTLKAGQKVHFSVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|254500655|ref|ZP_05112806.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] gi|222436726|gb|EEE43405.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] Length = 74 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFI P+ G D F+H SAV AG+ + EGQ + YD ++ Sbjct: 5 IMTTGTVKWFNSTKGFGFIQPD---NGGPDAFVHISAVERAGMHEIVEGQKIGYDMERDS 61 Query: 61 ANGKYSAENLK 71 +GK SA NL+ Sbjct: 62 KSGKMSACNLQ 72 >gi|111021327|ref|YP_704299.1| cold shock protein A [Rhodococcus jostii RHA1] gi|226363671|ref|YP_002781453.1| cold shock protein [Rhodococcus opacus B4] gi|110820857|gb|ABG96141.1| cold shock protein A [Rhodococcus jostii RHA1] gi|226242160|dbj|BAH52508.1| cold shock protein [Rhodococcus opacus B4] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H S + +G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGSGFRTLEENQRVEFEVGQGTK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|89097885|ref|ZP_01170772.1| cold shock protein [Bacillus sp. NRRL B-14911] gi|89087387|gb|EAR66501.1| cold shock protein [Bacillus sp. NRRL B-14911] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ S G +L EGQ V +D + Sbjct: 1 MATGKVKWFNAEKGFGFIEVE----GGEDVFVHFSAIQSEGFKSLDEGQEVEFDIEEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--PQAVNVTKL 66 >gi|311107157|ref|YP_003980010.1| cold-shock DNA-binding domain-containing protein 2 [Achromobacter xylosoxidans A8] gi|310761846|gb|ADP17295.1| cold-shock DNA-binding domain protein 2 [Achromobacter xylosoxidans A8] gi|317405217|gb|EFV85556.1| cold shock-like protein [Achromobacter xylosoxidans C54] Length = 68 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI P+ + D+F H S + S G +L E Q VT++ Sbjct: 1 MATGIVKWFNAEKGYGFIMPD---DGSKDLFAHYSEIRSEGYKSLQENQRVTFEVGTGPK 57 Query: 62 NGKYSAENLKL 72 SA+N+K+ Sbjct: 58 G--PSAKNIKV 66 >gi|94314090|ref|YP_587299.1| cold-shock DNA-binding domain-containing protein [Cupriavidus metallidurans CH34] gi|93357942|gb|ABF12030.1| cold-shock DNA-binding domain protein [Cupriavidus metallidurans CH34] Length = 126 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ GDD+F H S V G +L EGQ V Y Sbjct: 60 METGTVKWFNDSKGFGFITPDA---GGDDLFAHFSEVQGNGFKSLQEGQKVRY-VAGVGQ 115 Query: 62 NGKYS 66 G + Sbjct: 116 KGPAA 120 >gi|323136343|ref|ZP_08071425.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] gi|322398417|gb|EFY00937.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] Length = 70 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI P+ G DVF+H SA+ AGL L EGQ V Y+ V + Sbjct: 1 MQIGVVKWFNANKGFGFIQPDA---GGADVFVHISALERAGLHGLAEGQKVGYELVVDKR 57 Query: 62 NGKYSAENLKL 72 +GK+SA+ L+L Sbjct: 58 SGKFSADALQL 68 >gi|301058337|ref|ZP_07199370.1| cold-shock DNA-binding domain protein [delta proteobacterium NaphS2] gi|300447573|gb|EFK11305.1| cold-shock DNA-binding domain protein [delta proteobacterium NaphS2] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E G DVF+H SA+ +AG +L EG+ VT+D Q Sbjct: 1 MANGTVKWFNDQKGFGFIEQE----DGPDVFVHHSAINAAGFKSLNEGERVTFDIEQGPK 56 Query: 62 NGKYSAENLKLV 73 SA N+ V Sbjct: 57 G--LSAANVTAV 66 >gi|255027485|ref|ZP_05299471.1| cold shock protein [Listeria monocytogenes FSL J2-003] Length = 65 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI ++ G+D+F+H +A+ G +L EGQ VT++ V+ + Sbjct: 1 MQNGKVKWFNNEKGYGFIE----SDGGEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGNR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--AQAANVE 64 >gi|167754667|ref|ZP_02426794.1| hypothetical protein CLORAM_00170 [Clostridium ramosum DSM 1402] gi|237733540|ref|ZP_04564021.1| cold shock DNA-binding protein [Mollicutes bacterium D7] gi|167705499|gb|EDS20078.1| hypothetical protein CLORAM_00170 [Clostridium ramosum DSM 1402] gi|229383373|gb|EEO33464.1| cold shock DNA-binding protein [Coprobacillus sp. D7] Length = 68 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFIT + E G D+F+H SA+ + G L EGQ+V +D ++D Sbjct: 1 MSTGKVKWFNQEKGFGFITND---EDGKDIFVHFSAINAEGFKTLEEGQVVEFDINESDR 57 Query: 62 NGKYSAENLKL 72 A+N+ + Sbjct: 58 G--PQAQNVTV 66 >gi|13095918|ref|NP_076827.1| Csp [Lactococcus phage bIL312] gi|15672511|ref|NP_266685.1| cold shock protein D [Lactococcus lactis subsp. lactis Il1403] gi|12723413|gb|AAK04627.1|AE006287_6 cold shock protein D [Lactococcus lactis subsp. lactis Il1403] gi|12831129|gb|AAK08480.1|AF323673_27 Csp [Lactococcus phage bIL312] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT +E G D+F H SA+ S G +L EGQ V +D + Sbjct: 1 MANGTVKWFNADKGFGFIT----SEEGKDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQR 56 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 57 G--LQAVNIT 64 >gi|302533879|ref|ZP_07286221.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302442774|gb|EFL14590.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G LTEGQ VT+D Q Sbjct: 1 MANGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELTEGQRVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|212709693|ref|ZP_03317821.1| hypothetical protein PROVALCAL_00741 [Providencia alcalifaciens DSM 30120] gi|212687504|gb|EEB47032.1| hypothetical protein PROVALCAL_00741 [Providencia alcalifaciens DSM 30120] Length = 76 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFI P T+ GDDVF H S + G L GQ V Y Sbjct: 1 MNTGTVKWFNNAKGFGFICP---TDGGDDVFAHYSTIQMDGYRTLKAGQKVNYSVGAGPK 57 Query: 62 NGKYSAENLKLVPKSSN 78 A+ + + +S Sbjct: 58 G--SHADVIIPITESGE 72 >gi|312144105|ref|YP_003995551.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] gi|311904756|gb|ADQ15197.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 MV+ G +KW++ KGYGFI E GDDVF+H SA+ G L+E Q V ++ V+ D Sbjct: 1 MVYTGKVKWFDEKKGYGFIERE----DGDDVFVHFSAIEQEGFKTLSEDQEVEFEIVEGD 56 Query: 61 ANGKYSAENLKLV 73 AEN+ ++ Sbjct: 57 RG--PQAENVVVI 67 >gi|295114004|emb|CBL32641.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFIT E G+D+F H SA+ S G L EGQ VT+D + Sbjct: 1 MNNGTVKWFNADKGFGFIT----GEDGNDIFAHFSAIQSDGFKTLDEGQAVTFD-TEEGP 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGLQATNIVK 65 >gi|260769345|ref|ZP_05878278.1| cold shock protein CspA [Vibrio furnissii CIP 102972] gi|260614683|gb|EEX39869.1| cold shock protein CspA [Vibrio furnissii CIP 102972] gi|315181877|gb|ADT88790.1| cold-shock DNA-binding domain protein [Vibrio furnissii NCTC 11218] Length = 70 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFITP+ G D+F+H ++AS G L EGQ V+++ Q + Sbjct: 6 TGTVKWFNETKGFGFITPD---NGGADLFVHFRSIASEGFKTLAEGQKVSFNVEQGNKG- 61 Query: 64 KYSAENLKLV 73 A N+ ++ Sbjct: 62 -PQAGNVTVI 70 >gi|238025342|ref|YP_002909574.1| Cold-shock DNA-binding domain-containing protein [Burkholderia glumae BGR1] gi|237880007|gb|ACR32339.1| Cold-shock DNA-binding domain protein [Burkholderia glumae BGR1] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFITP+ + +DVF+H S + +G +L + Q V Y+ V+ Sbjct: 1 MYTGTVKWFNDAKGFGFITPD---DGSEDVFVHFSEIQVSGFKSLQDSQRVRYE-VRTGP 56 Query: 62 NGKYSAEN 69 GK +A+ Sbjct: 57 KGKQAADV 64 >gi|167584235|ref|ZP_02376623.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S + G L E Q V+Y+ + Sbjct: 1 MDTGTVKWFNETKGFGFITPD---KGGDDLFAHFSEIRGTGFKTLAENQKVSYEVKRGPK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--LQASNITPL 67 >gi|116618954|ref|YP_819325.1| cold-shock DNA-binding protein family protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227431399|ref|ZP_03913450.1| CspA family cold shock transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|48727558|gb|AAT46080.1| cold shock protein [Leuconostoc mesenteroides] gi|116097801|gb|ABJ62952.1| cold-shock DNA-binding protein family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227352862|gb|EEJ43037.1| CspA family cold shock transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFIT E SG+DVF H SA+ G L EGQ VT+D +D Sbjct: 1 MEKGTVKWFNGEKGYGFITRE----SGEDVFAHFSAIQGDGFKTLDEGQAVTFDVETSDR 56 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 57 G--LQATNIT 64 >gi|39934248|ref|NP_946524.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris CGA009] gi|39648096|emb|CAE26616.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009] Length = 86 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +LTEGQ ++++ + Sbjct: 16 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 72 Query: 61 ANGKYSAENLKLVP 74 A NL + P Sbjct: 73 KGKGPKAVNLVISP 86 >gi|296111480|ref|YP_003621862.1| cold-shock domain family protein [Leuconostoc kimchii IMSNU 11154] gi|295833012|gb|ADG40893.1| cold-shock domain family protein [Leuconostoc kimchii IMSNU 11154] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGF+T E +G+DVF H SA+ G L EGQ V ++ +D Sbjct: 1 MEKGTVKWFNGEKGYGFVTRE----NGEDVFAHFSAIQGDGFKTLEEGQAVEFEVETSD- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGLQAANITKL 66 >gi|226304760|ref|YP_002764718.1| cold shock protein [Rhodococcus erythropolis PR4] gi|229492328|ref|ZP_04386135.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|226183875|dbj|BAH31979.1| probable cold shock protein [Rhodococcus erythropolis PR4] gi|229320737|gb|EEN86551.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +GS+KW+N +KG+GFI EG G DVF+H S + +G +L EGQ V ++ Q Sbjct: 1 MAQGSVKWFNGEKGFGFIEQEG---GGPDVFVHYSEIQGSGYKSLDEGQKVEFEIGQGQK 57 Query: 62 NGKYSAENLKLV 73 A+N++ + Sbjct: 58 G--PQAQNVRAI 67 >gi|110634483|ref|YP_674691.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp. BNC1] gi|110285467|gb|ABG63526.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1] Length = 70 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N KG+GFITP+ DVF+H SAV ++G+ +L +GQ V++D + Sbjct: 1 MAQTGTVKFFNATKGFGFITPDNGQ---KDVFVHISAVEASGMRSLVDGQKVSFDVEPDR 57 Query: 61 ANGKYSAENLK 71 A NL Sbjct: 58 MGKGPKAVNLS 68 >gi|320353121|ref|YP_004194460.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus DSM 2032] gi|320121623|gb|ADW17169.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus DSM 2032] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + G DVF+H SA+ + G +L EG+ V+++ V + A Sbjct: 1 MAEGTVKWFNDSKGFGFIAQD----GGKDVFVHHSAIQADGFKSLQEGERVSFNVV-DGA 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 KGPAAANVIK 65 >gi|300715528|ref|YP_003740331.1| Cold shock protein [Erwinia billingiae Eb661] gi|299061364|emb|CAX58473.1| Cold shock protein [Erwinia billingiae Eb661] Length = 70 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFI+P T+ DVF+H SA+ + G L EGQ V + +N G Sbjct: 6 TGLVKWFNAEKGFGFISP---TDGSKDVFVHFSAIQNGGFKTLEEGQKVEFSI-ENGQKG 61 Query: 64 KYSAENLKL 72 +A L Sbjct: 62 PAAANVTAL 70 >gi|291616468|ref|YP_003519210.1| CspB [Pantoea ananatis LMG 20103] gi|291151498|gb|ADD76082.1| CspB [Pantoea ananatis LMG 20103] gi|327392905|dbj|BAK10327.1| cold shock-like protein CspB [Pantoea ananatis AJ13355] Length = 70 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW+N +KG+GFI+P + DVF+H SA+ +L EGQ V + V+N A G Sbjct: 6 RGTVKWFNAEKGFGFISP---QDGSKDVFVHFSAIQGTDFRSLDEGQQVEF-TVENGAKG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVVGL 70 >gi|259418670|ref|ZP_05742587.1| conserved domain protein [Silicibacter sp. TrichCH4B] gi|259344892|gb|EEW56746.1| conserved domain protein [Silicibacter sp. TrichCH4B] Length = 68 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI EG + DVF+H SAV +GL L +GQ VT++ Q+ Sbjct: 1 MANGTVKWFNSTKGYGFIAVEGRSN---DVFVHISAVERSGLTGLADGQAVTFEI-QSGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA +L+L Sbjct: 57 DGRESASDLQL 67 >gi|242239695|ref|YP_002987876.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] gi|242131752|gb|ACS86054.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] Length = 73 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE + G+D+F H S + G L GQ+V + Q Sbjct: 1 METGTVKWFNNAKGFGFICPE---DGGEDIFAHYSTIQMDGYRTLKAGQIVKFTVHQG-P 56 Query: 62 NGKYSAENLKLVPKS 76 G +++ + +V ++ Sbjct: 57 KGNHASLIVPVVGET 71 >gi|111021610|ref|YP_704582.1| cold shock protein [Rhodococcus jostii RHA1] gi|226364145|ref|YP_002781927.1| cold shock protein [Rhodococcus opacus B4] gi|110821140|gb|ABG96424.1| cold shock protein [Rhodococcus jostii RHA1] gi|226242634|dbj|BAH52982.1| cold shock protein [Rhodococcus opacus B4] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI P+ + DVF+H S ++ +G +L E Q V ++ Q Sbjct: 1 MAQGVVKWFNSEKGFGFIAPD---DGSADVFVHYSEISGSGYKSLEENQRVEFEVGQGQK 57 Query: 62 NGKYSAENLKLV 73 A+N++ V Sbjct: 58 G--PQAQNVRAV 67 >gi|90409640|ref|ZP_01217657.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|90410063|ref|ZP_01218080.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|90413803|ref|ZP_01221790.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|90325114|gb|EAS41617.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|90328993|gb|EAS45250.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|90329416|gb|EAS45673.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] Length = 69 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 5 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 LQAANVVAL 69 >gi|307824911|ref|ZP_07655133.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307733958|gb|EFO04813.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + G+DVF+H S + G LTEG VT+D ++ Sbjct: 1 MATGTVKWFNNTKGFGFIAP---ADGGEDVFVHHSVIQGEGFKTLTEGDTVTFDI-ESGP 56 Query: 62 NGKYSAEN 69 G +A Sbjct: 57 KGLTAANV 64 >gi|260768242|ref|ZP_05877176.1| cold shock protein [Vibrio furnissii CIP 102972] gi|260616272|gb|EEX41457.1| cold shock protein [Vibrio furnissii CIP 102972] gi|315179943|gb|ADT86857.1| Cold shock protein [Vibrio furnissii NCTC 11218] Length = 70 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFIT + G+DVF+H +++ S G L EGQ V++D Q G Sbjct: 6 TGSVKWFNETKGFGFITQD---NGGNDVFVHFASIVSEGFKTLAEGQRVSFDVEQG-KKG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PQAANVVAL 70 >gi|222153624|ref|YP_002562801.1| cold shock protein CspC [Streptococcus uberis 0140J] gi|222114437|emb|CAR43247.1| cold shock protein CspC [Streptococcus uberis 0140J] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFIT E +G DVF H S + S G +L EGQ V++D Q Sbjct: 1 MTNGTVKWFNAEKGFGFITQE----NGTDVFAHFSEIQSNGFKSLDEGQKVSFDLEQGQR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--LQATNI 63 >gi|326489997|dbj|BAJ94072.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 85 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ + DVF+H SA++ AG L EGQ V + Y+Q+ G Sbjct: 7 TGVVKWFNESKGFGFITPD---DGSKDVFVHFSAISGAGFKTLAEGQRVEF-YIQDGQKG 62 Query: 64 KYSAENLKL 72 + + + L Sbjct: 63 PSAVDVMAL 71 >gi|157831974|pdb|1MJC|A Chain A, Crystal Structure Of Cspa, The Major Cold Shock Protein Of Escherichia Coli Length = 69 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H SA+ + G +L EGQ V++ ++ A G Sbjct: 5 TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 60 Query: 64 KYSAENLK 71 +A N+ Sbjct: 61 P-AAGNVT 67 >gi|310825508|ref|YP_003957866.1| cold-shock DNA-binding domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309398580|gb|ADO76039.1| Cold-shock DNA-binding domain protein [Stigmatella aurantiaca DW4/3-1] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT +G G+DVF H +A+ + G +LTEGQ V ++ + Sbjct: 1 MATGVVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQADGFRSLTEGQRVEFEVSRGPK 57 Query: 62 NGKYSAENLKLV 73 A+N+K + Sbjct: 58 G--LQAQNVKPI 67 >gi|157963078|ref|YP_001503112.1| cold-shock DNA-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|167625248|ref|YP_001675542.1| cold-shock DNA-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|157848078|gb|ABV88577.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC 700345] gi|167355270|gb|ABZ77883.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis HAW-EB4] Length = 69 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+ S G L EGQ V+++ Q G Sbjct: 5 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAITSDGFKTLAEGQKVSFEVEQGQ-KG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 LQAANVIAL 69 >gi|134301076|ref|YP_001114572.1| cold-shock DNA-binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134053776|gb|ABO51747.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens MI-1] Length = 65 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFI E G DVF H SA+ G L EGQ V +D V+ + Sbjct: 2 QGTVKWFNAEKGFGFIEVE----GGKDVFAHFSAITGDGYKTLEEGQRVEFDVVEGNRG- 56 Query: 64 KYSAENL 70 AEN+ Sbjct: 57 -PQAENI 62 >gi|331091468|ref|ZP_08340306.1| cold shock protein cspA [Lachnospiraceae bacterium 2_1_46FAA] gi|330404024|gb|EGG83574.1| cold shock protein cspA [Lachnospiraceae bacterium 2_1_46FAA] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGFI+ E+G+DVF+H + + G +L EGQ V ++ + A Sbjct: 1 MNKGTVKWFNNQKGYGFIS----DEAGNDVFVHYTGLNMEGFKSLEEGQAVEFEITEG-A 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 KGPQAVNVVKL 66 >gi|328880509|emb|CCA53748.1| cold shock protein [Streptomyces venezuelae ATCC 10712] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF H S +A++G L EGQ VT+D Q Sbjct: 1 MANGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|317506528|ref|ZP_07964325.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255167|gb|EFV14440.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 68 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KG+GFITP+ + G D+F+H SA+ + G L E Q V ++ VQ Sbjct: 1 MPQGTVKWFNEEKGFGFITPD---DGGKDLFVHFSAITGSTGFRTLQENQRVQFE-VQAS 56 Query: 61 ANGKYSAEN 69 G +A Sbjct: 57 DRGPQAASV 65 >gi|308177559|ref|YP_003916965.1| cold shock protein [Arthrobacter arilaitensis Re117] gi|307745022|emb|CBT75994.1| cold shock protein [Arthrobacter arilaitensis Re117] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P ++ DVF H SA+ S G +L EGQ V Y + Sbjct: 1 MATGTVKWFNAEKGFGFIAP---SDGSADVFAHYSAIQSFGFRSLEEGQTVEYTL-EAGP 56 Query: 62 NGKYSAENLK 71 G A N++ Sbjct: 57 KGPQ-ATNIQ 65 >gi|49487482|ref|YP_044703.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253730390|ref|ZP_04864555.1| cold-shock protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257793529|ref|ZP_05642508.1| cold shock protein CspB [Staphylococcus aureus A9781] gi|258411165|ref|ZP_05681444.1| cold shock protein cspB [Staphylococcus aureus A9763] gi|258420930|ref|ZP_05683864.1| cold shock protein [Staphylococcus aureus A9719] gi|258438570|ref|ZP_05689793.1| cold shock protein [Staphylococcus aureus A9299] gi|258443974|ref|ZP_05692312.1| cold shock protein [Staphylococcus aureus A8115] gi|258446209|ref|ZP_05694369.1| cold shock protein [Staphylococcus aureus A6300] gi|258449132|ref|ZP_05697238.1| cold shock protein [Staphylococcus aureus A6224] gi|258454390|ref|ZP_05702358.1| cold shock protein cspB [Staphylococcus aureus A5937] gi|282894269|ref|ZP_06302499.1| cold shock protein cspLA [Staphylococcus aureus A8117] gi|282927740|ref|ZP_06335354.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A10102] gi|295406853|ref|ZP_06816657.1| cold shock protein [Staphylococcus aureus A8819] gi|297245888|ref|ZP_06929750.1| cold shock protein [Staphylococcus aureus A8796] gi|49245925|emb|CAG44406.1| cold shock protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253725870|gb|EES94599.1| cold-shock protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257787501|gb|EEV25841.1| cold shock protein CspB [Staphylococcus aureus A9781] gi|257840050|gb|EEV64515.1| cold shock protein cspB [Staphylococcus aureus A9763] gi|257843120|gb|EEV67535.1| cold shock protein [Staphylococcus aureus A9719] gi|257848129|gb|EEV72121.1| cold shock protein [Staphylococcus aureus A9299] gi|257850858|gb|EEV74802.1| cold shock protein [Staphylococcus aureus A8115] gi|257855035|gb|EEV77978.1| cold shock protein [Staphylococcus aureus A6300] gi|257857565|gb|EEV80460.1| cold shock protein [Staphylococcus aureus A6224] gi|257863484|gb|EEV86244.1| cold shock protein cspB [Staphylococcus aureus A5937] gi|282590500|gb|EFB95578.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A10102] gi|282763314|gb|EFC03444.1| cold shock protein cspLA [Staphylococcus aureus A8117] gi|294968318|gb|EFG44343.1| cold shock protein [Staphylococcus aureus A8819] gi|297177253|gb|EFH36506.1| cold shock protein [Staphylococcus aureus A8796] Length = 75 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E +G DVF+H S +AS G L EGQ VT++ + Sbjct: 10 MNNGTVKWFNAEKGFGFIEQE----NGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQR 65 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 66 G--DQAVNVQTV 75 >gi|49484900|ref|YP_042124.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252] gi|87160637|ref|YP_495273.1| cold shock protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196660|ref|YP_501491.1| cold shock protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|257424187|ref|ZP_05600616.1| cold shock protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426864|ref|ZP_05603266.1| cold shock protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257429500|ref|ZP_05605887.1| cold shock protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432147|ref|ZP_05608510.1| cold shock protein [Staphylococcus aureus subsp. aureus E1410] gi|257435108|ref|ZP_05611159.1| cold shock protein [Staphylococcus aureus subsp. aureus M876] gi|258423247|ref|ZP_05686139.1| cold shock protein [Staphylococcus aureus A9635] gi|258451377|ref|ZP_05699408.1| cold shock protein [Staphylococcus aureus A5948] gi|282902622|ref|ZP_06310515.1| conserved domain protein [Staphylococcus aureus subsp. aureus C160] gi|282907038|ref|ZP_06314886.1| cold shock protein beta-ribbon CspA family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282910016|ref|ZP_06317824.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912264|ref|ZP_06320060.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WBG10049] gi|282912904|ref|ZP_06320696.1| conserved domain protein [Staphylococcus aureus subsp. aureus M899] gi|282918059|ref|ZP_06325809.1| cold shock protein [Staphylococcus aureus subsp. aureus D139] gi|282920709|ref|ZP_06328428.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A9765] gi|282921281|ref|ZP_06328999.1| cold shock protein [Staphylococcus aureus subsp. aureus C427] gi|282922532|ref|ZP_06330222.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus C101] gi|283767781|ref|ZP_06340696.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus aureus subsp. aureus H19] gi|283959475|ref|ZP_06376916.1| conserved domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293497957|ref|ZP_06665811.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus 58-424] gi|293511547|ref|ZP_06670241.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293550156|ref|ZP_06672828.1| conserved domain protein [Staphylococcus aureus subsp. aureus M1015] gi|294849818|ref|ZP_06790558.1| cold shock protein [Staphylococcus aureus A9754] gi|49243029|emb|CAG41763.1| cold shock protein [Staphylococcus aureus subsp. aureus MRSA252] gi|87126611|gb|ABD21125.1| cold shock protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87204218|gb|ABD32028.1| cold shock protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|257273205|gb|EEV05307.1| cold shock protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276495|gb|EEV07946.1| cold shock protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279981|gb|EEV10568.1| cold shock protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283026|gb|EEV13158.1| cold shock protein [Staphylococcus aureus subsp. aureus E1410] gi|257285704|gb|EEV15820.1| cold shock protein [Staphylococcus aureus subsp. aureus M876] gi|257846576|gb|EEV70598.1| cold shock protein [Staphylococcus aureus A9635] gi|257860907|gb|EEV83724.1| cold shock protein [Staphylococcus aureus A5948] gi|282314753|gb|EFB45139.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus C101] gi|282315696|gb|EFB46080.1| cold shock protein [Staphylococcus aureus subsp. aureus C427] gi|282318344|gb|EFB48704.1| cold shock protein [Staphylococcus aureus subsp. aureus D139] gi|282323004|gb|EFB53323.1| conserved domain protein [Staphylococcus aureus subsp. aureus M899] gi|282323960|gb|EFB54276.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WBG10049] gi|282326082|gb|EFB56387.1| cold shock domain-containing protein CspD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329937|gb|EFB59458.1| cold shock protein beta-ribbon CspA family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282594117|gb|EFB99105.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus A9765] gi|282597081|gb|EFC02040.1| conserved domain protein [Staphylococcus aureus subsp. aureus C160] gi|283461660|gb|EFC08744.1| cold shock protein (beta-ribbon CspA family) [Staphylococcus aureus subsp. aureus H19] gi|283789067|gb|EFC27894.1| conserved domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290919203|gb|EFD96279.1| conserved domain protein [Staphylococcus aureus subsp. aureus M1015] gi|291096888|gb|EFE27146.1| cold shock protein (beta-ribbon, CspA family) [Staphylococcus aureus subsp. aureus 58-424] gi|291465505|gb|EFF08037.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|294823366|gb|EFG39795.1| cold shock protein [Staphylococcus aureus A9754] Length = 75 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E +G DVF+H S +AS G L EGQ VT++ + Sbjct: 10 MNNGTVKWFNAEKGFGFIEQE----NGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQR 65 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 66 G--DQAVNVQTV 75 >gi|226943301|ref|YP_002798374.1| Cold shock domain family protein [Azotobacter vinelandii DJ] gi|226718228|gb|ACO77399.1| Cold shock domain family protein [Azotobacter vinelandii DJ] Length = 70 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ V+++ VQ Sbjct: 4 RQTGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIEGTGFKSLKEGQKVSFEAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++++ Sbjct: 60 G--MQADKVQIL 69 >gi|310815277|ref|YP_003963241.1| cold shock family protein [Ketogulonicigenium vulgare Y25] gi|308754012|gb|ADO41941.1| cold shock family protein [Ketogulonicigenium vulgare Y25] Length = 68 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PEG G DVF+H SAV AGL L++ Q VT+D ++ Sbjct: 1 MPNGTVKWFNTTKGYGFIAPEG---GGKDVFVHISAVEQAGLTGLSDDQKVTFDLIEG-R 56 Query: 62 NGKYSAENLK 71 +G+ A NLK Sbjct: 57 DGRQMAGNLK 66 >gi|317496049|ref|ZP_07954409.1| cold-shock' DNA-binding domain-containing protein [Gemella moribillum M424] gi|316913624|gb|EFV35110.1| cold-shock' DNA-binding domain-containing protein [Gemella moribillum M424] Length = 66 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG DVF+H S++ G L EG V ++ V++ A Sbjct: 1 MKQGTVKWFNEEKGFGFIAVEGE----KDVFVHFSSIQKDGFKTLKEGDKVEFE-VEDGA 55 Query: 62 NGKYSAENLKL 72 G +A + L Sbjct: 56 RGPQAANVVVL 66 >gi|295394500|ref|ZP_06804723.1| cold shock protein CspA [Brevibacterium mcbrellneri ATCC 49030] gi|294972679|gb|EFG48531.1| cold shock protein CspA [Brevibacterium mcbrellneri ATCC 49030] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFIT +GS D+F+H S + G +L EGQ V ++ Q D Sbjct: 1 MTQGTVKWFNAEKGYGFITVDGSD---QDIFVHYSEIQMDGYRSLQEGQQVEFNVGQGDK 57 Query: 62 NGKYSAENLKLV 73 AE + + Sbjct: 58 G--PQAEGVTPL 67 >gi|302552862|ref|ZP_07305204.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] gi|302470480|gb|EFL33573.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] Length = 67 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF H S +A++G L EGQ VT+D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|299140055|ref|ZP_07033224.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX8] gi|298597901|gb|EFI54070.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX8] Length = 94 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++G++KW+N KG+GF+ + SG DVF+H SA+ G +L EG V +D +Q Sbjct: 27 YKGTVKWFNNAKGFGFLARD----SGPDVFVHYSAIQLDGYKSLKEGDEVEFDVIQGT-K 81 Query: 63 GKYSAENLK 71 G + + ++ Sbjct: 82 GPQADQVVR 90 >gi|188534694|ref|YP_001908491.1| Cold shock protein [Erwinia tasmaniensis Et1/99] gi|259909319|ref|YP_002649675.1| Cold shock protein [Erwinia pyrifoliae Ep1/96] gi|188029736|emb|CAO97615.1| Cold shock protein [Erwinia tasmaniensis Et1/99] gi|224964941|emb|CAX56469.1| Cold shock protein [Erwinia pyrifoliae Ep1/96] gi|283479388|emb|CAY75304.1| Cold shock-like protein cspG (CPS-G) [Erwinia pyrifoliae DSM 12163] gi|310766775|gb|ADP11725.1| Cold shock protein [Erwinia sp. Ejp617] Length = 70 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFI+P T+ DVF+H SA+ + G L EGQ V + +N G Sbjct: 6 TGLVKWFNAEKGFGFISP---TDGSKDVFVHFSAIQNGGFKTLEEGQKVEFTI-ENGQKG 61 Query: 64 KYSAENLKL 72 +A L Sbjct: 62 PAAANVTAL 70 >gi|218780300|ref|YP_002431618.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761684|gb|ACL04150.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 66 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + G DVF+H SA+ S+G +L EG VT+D Q Sbjct: 1 MANGTVKWFNDQKGFGFIEQD----GGPDVFVHHSAINSSGFRSLNEGDRVTFDIEQGAK 56 Query: 62 NGKYSAENLKL 72 SA+N+ + Sbjct: 57 G--PSAKNVTV 65 >gi|108801761|ref|YP_641958.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. MCS] gi|118473705|ref|YP_890379.1| hypothetical protein MSMEG_6159 [Mycobacterium smegmatis str. MC2 155] gi|119870912|ref|YP_940864.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. KMS] gi|126437748|ref|YP_001073439.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. JLS] gi|302595677|sp|A0R5E1|CSPA_MYCS2 RecName: Full=Probable cold shock protein A gi|9587215|gb|AAF89211.1|AF281675_1 cold-shock protein CspA [Mycobacterium smegmatis] gi|108772180|gb|ABG10902.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS] gi|118174992|gb|ABK75888.1| conserved domain protein [Mycobacterium smegmatis str. MC2 155] gi|119697001|gb|ABL94074.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS] gi|126237548|gb|ABO00949.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS] Length = 67 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H + + +G L E Q V ++ Q+ Sbjct: 1 MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|225175289|ref|ZP_03729284.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] gi|225169041|gb|EEG77840.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] Length = 65 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI E G DVF+H SA+ G +L EG+ V ++ V+ G Sbjct: 3 GKVKWFNQEKGYGFIERE----DGGDVFVHYSAIQQEGFKSLAEGEEVEFEIVEGT-RGP 57 Query: 65 YSAENLKL 72 +A +KL Sbjct: 58 QAANVVKL 65 >gi|169349912|ref|ZP_02866850.1| hypothetical protein CLOSPI_00651 [Clostridium spiroforme DSM 1552] gi|169293480|gb|EDS75613.1| hypothetical protein CLOSPI_00651 [Clostridium spiroforme DSM 1552] Length = 67 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFIT + E G D+F+H SA+ + G L EGQ+V ++ + D Sbjct: 1 MSTGKVKWFNQEKGFGFITND---EDGKDIFVHFSAINAEGFKTLEEGQIVEFEINETDR 57 Query: 62 NGKYSAENLKL 72 A+N+ + Sbjct: 58 G--PQAQNVTV 66 >gi|77465630|ref|YP_355133.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1] gi|77390048|gb|ABA81232.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides 2.4.1] Length = 68 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P DVF+H +A+ AG+ L +GQ +TYD + D Sbjct: 1 MANGTVKWFNATKGFGFIAP---AHGSKDVFVHVTALERAGIRQLNDGQALTYDM-ETDR 56 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 57 NGRESATNLVL 67 >gi|148546265|ref|YP_001266367.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida F1] gi|148510323|gb|ABQ77183.1| cold-shock DNA-binding protein family [Pseudomonas putida F1] Length = 69 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFITPE SG D+F+H A+ +G +L EGQ VT++ VQ Sbjct: 4 RQNGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGSGFKSLKEGQKVTFEAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++ V Sbjct: 60 G--MQADKVQPV 69 >gi|326692606|ref|ZP_08229611.1| cold-shock DNA-binding protein family protein [Leuconostoc argentinum KCTC 3773] Length = 66 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT E +GDDVF H SA+ S G L EGQ VT+D V++ Sbjct: 1 METGTVKWFNGDKGFGFITRE----NGDDVFAHFSAIQSNGFKTLDEGQSVTFD-VESGD 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGLQATNIVK 65 >gi|309779238|ref|ZP_07674001.1| cold-shock protein [Ralstonia sp. 5_7_47FAA] gi|308922042|gb|EFP67676.1| cold-shock protein [Ralstonia sp. 5_7_47FAA] Length = 67 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+G G D+F H S + +G L +GQ VT++ Q Sbjct: 1 MATGTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVTFEVKQGPK 57 Query: 62 NGKYSA 67 + SA Sbjct: 58 GLQASA 63 >gi|283787799|ref|YP_003367664.1| cold shock protein [Citrobacter rodentium ICC168] gi|282951253|emb|CBG90947.1| cold shock protein [Citrobacter rodentium ICC168] Length = 70 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H SA+ + G +L EGQ V++ ++ A G Sbjct: 6 TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 61 Query: 64 KYSAENL 70 +A N+ Sbjct: 62 P-AAGNV 67 >gi|302545223|ref|ZP_07297565.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302462841|gb|EFL25934.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653] Length = 67 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI +G G DVF H S +A+ G L EGQ VT+D Q Sbjct: 1 MATGTVKWFNAEKGYGFIEQDG---GGADVFAHYSNIATQGFRELQEGQKVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|120406346|ref|YP_956175.1| cold-shock DNA-binding domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119959164|gb|ABM16169.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii PYR-1] Length = 67 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H + + +G L E Q V ++ Q+ Sbjct: 1 MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|163941513|ref|YP_001646397.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|163863710|gb|ABY44769.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] Length = 66 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N DKG+GFI E G+DVF+H SA+ G +L EGQ VT++ Q Sbjct: 1 MEQGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQIDGFKSLDEGQSVTFEVEQGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQATNVQ 64 >gi|328462059|gb|EGF34235.1| putative cold shock protein [Lactobacillus helveticus MTCC 5463] Length = 66 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT DVF+H SA+ + G +L EGQ V+YD Q Sbjct: 1 MQTGTVKWFNADKGFGFIT----GSDNKDVFVHFSAIKTDGFKSLEEGQKVSYDVEQGG- 55 Query: 62 NGKYSAENL 70 G + + Sbjct: 56 RGPQATNVV 64 >gi|303239877|ref|ZP_07326400.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus CD2] gi|302592587|gb|EFL62312.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus CD2] Length = 65 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 6/68 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E GDDVF+H SA+ S G +L EGQ V +D + Sbjct: 3 GKVKWFNAEKGFGFIERE----GGDDVFVHFSAIQSQGYKSLDEGQRVEFDLEKGQRG-- 56 Query: 65 YSAENLKL 72 A N++L Sbjct: 57 LQATNVRL 64 >gi|326407203|gb|ADZ64274.1| cold shock protein ,beta-ribbon, CspA family [Lactococcus lactis subsp. lactis CV56] Length = 66 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI S+E G D+F H SA+ S G +L EGQ V +D + Sbjct: 1 MANGTVKWFNATKGFGFI----SSEDGQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQR 56 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 57 G--LQAVNIT 64 >gi|239942860|ref|ZP_04694797.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998] gi|239989320|ref|ZP_04709984.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379] gi|291446332|ref|ZP_06585722.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|291349279|gb|EFE76183.1| cold shock protein [Streptomyces roseosporus NRRL 15998] Length = 67 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +AS+G L EGQ V++D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIASSGFRELQEGQKVSFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|237786535|ref|YP_002907240.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385] gi|237759447|gb|ACR18697.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385] Length = 67 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H + + +G L E Q V ++ + Sbjct: 1 MAQGTVKWFNAEKGFGFIAPE---DGSQDVFVHYTEIQGSGFRTLEENQKVEFEIGEGAK 57 Query: 62 NGKYS 66 + Sbjct: 58 GPQAQ 62 >gi|149911304|ref|ZP_01899925.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] gi|149805619|gb|EDM65621.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] Length = 67 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG++KW+N DKG+GFITP+ E G+D+F+H S + ++G L +GQ V ++ Sbjct: 1 MSRGTVKWFNADKGFGFITPD---EGGNDLFVHHSEIQTSGYATLEDGQKVEFEVGSGQK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--PCATNVTAI 67 >gi|238757625|ref|ZP_04618809.1| Cold shock-like protein cspE [Yersinia aldovae ATCC 35236] gi|238704130|gb|EEP96663.1| Cold shock-like protein cspE [Yersinia aldovae ATCC 35236] Length = 65 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y Q+ G Sbjct: 1 MGQVKWFNESKGFGFIEQ---ADGGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPRG 56 Query: 64 KYSAENLKL 72 +A + L Sbjct: 57 PAAANVVAL 65 >gi|188996314|ref|YP_001930565.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931381|gb|ACD66011.1| cold-shock DNA-binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 68 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 3/64 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW++ KG+GFIT + ++G D+F+H SA+ +G NL EGQ V ++ VQ++ Sbjct: 1 MAVTGTVKWFDSKKGFGFITRD---DNGQDIFVHFSAIQGSGFKNLEEGQKVRFEIVQDE 57 Query: 61 ANGK 64 + Sbjct: 58 KGPR 61 >gi|126699599|ref|YP_001088496.1| cold shock protein [Clostridium difficile 630] gi|254975590|ref|ZP_05272062.1| cold shock protein [Clostridium difficile QCD-66c26] gi|255092978|ref|ZP_05322456.1| cold shock protein [Clostridium difficile CIP 107932] gi|255101124|ref|ZP_05330101.1| cold shock protein [Clostridium difficile QCD-63q42] gi|255306991|ref|ZP_05351162.1| cold shock protein [Clostridium difficile ATCC 43255] gi|255314719|ref|ZP_05356302.1| cold shock protein [Clostridium difficile QCD-76w55] gi|255517393|ref|ZP_05385069.1| cold shock protein [Clostridium difficile QCD-97b34] gi|255650500|ref|ZP_05397402.1| cold shock protein [Clostridium difficile QCD-37x79] gi|260683608|ref|YP_003214893.1| cold shock protein [Clostridium difficile CD196] gi|260687268|ref|YP_003218402.1| cold shock protein [Clostridium difficile R20291] gi|306520461|ref|ZP_07406808.1| cold shock protein [Clostridium difficile QCD-32g58] gi|115251036|emb|CAJ68867.1| Major cold shock protein CspC [Clostridium difficile] gi|260209771|emb|CBA63577.1| cold shock protein [Clostridium difficile CD196] gi|260213285|emb|CBE04832.1| cold shock protein [Clostridium difficile R20291] Length = 66 Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFI+ EG DDVF H SA+ ++G +L EGQ V++D V+ Sbjct: 1 MNNGIVKWFNNEKGFGFISMEGR----DDVFAHFSAIQTSGFKSLEEGQQVSFDIVKGAR 56 Query: 62 NGKYSAENLKLV 73 AEN+ ++ Sbjct: 57 G--PQAENITIL 66 >gi|322832237|ref|YP_004212264.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|321167438|gb|ADW73137.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] Length = 69 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI + G DVF+H SA+A+ G L EGQ V Y Q+ Sbjct: 4 KNGQVKWFNESKGFGFIEQ---ADGGKDVFVHFSAIATDGFKTLAEGQRVEYTI-QDSPR 59 Query: 63 GKYSAENLKL 72 G +A + L Sbjct: 60 GPAAANVIAL 69 >gi|254467917|ref|ZP_05081323.1| 'Cold-shock' DNA-binding domain, putative [beta proteobacterium KB13] gi|207086727|gb|EDZ64010.1| 'Cold-shock' DNA-binding domain, putative [beta proteobacterium KB13] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + +D+F H S++ G +L EGQ VT++ + Sbjct: 1 MAEGTVKWFNDAKGFGFITPD---DGSEDLFAHFSSITGDGYKSLKEGQRVTFEVT-DGP 56 Query: 62 NGKYSAE 68 GK ++ Sbjct: 57 KGKQASN 63 >gi|229823989|ref|ZP_04450058.1| hypothetical protein GCWU000282_01293 [Catonella morbi ATCC 51271] gi|229786343|gb|EEP22457.1| hypothetical protein GCWU000282_01293 [Catonella morbi ATCC 51271] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI E +G+DVF+H SA+ G L EGQ+V ++ V+ A Sbjct: 1 MEQGKVKWFNSEKGFGFIERE----NGNDVFVHFSAILGEGYKTLEEGQVVNFE-VEEGA 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAANVEKL 66 >gi|222528760|ref|YP_002572642.1| cold-shock DNA-binding domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222455607|gb|ACM59869.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+NP+KGYGFI S ++G+DVF+H SA+ G L EGQ V +D V+ + Sbjct: 2 RGKVKWFNPEKGYGFI----SADNGEDVFVHFSAINMEGYKTLAEGQTVEFDIVKTERG- 56 Query: 64 KYSAENLKLVP 74 A N++ V Sbjct: 57 -NQALNVRKVK 66 >gi|146295937|ref|YP_001179708.1| cold-shock DNA-binding domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409513|gb|ABP66517.1| cold-shock DNA-binding protein family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+NP+KGYGFI+ TE+GDDVF+H SA+ G L EGQ+V +D V+++ Sbjct: 2 RGRVKWFNPEKGYGFIS----TENGDDVFVHFSAINMEGYKTLAEGQMVEFDVVKSERG- 56 Query: 64 KYSAENLKLVP 74 A N++ V Sbjct: 57 -NQAVNVRKVK 66 >gi|284009245|emb|CBA76349.1| cold shock protein [Arsenophonus nasoniae] Length = 70 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 7/75 (9%) Query: 1 MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M+ + G++KW+N KG+GFITPE + DVF+H +A+ S G L EGQ V +D + Sbjct: 1 MMSKVKGNVKWFNEAKGFGFITPE---DGSKDVFVHFTAIKSEGFKTLAEGQKVEFDITE 57 Query: 59 NDANGKYSAENLKLV 73 + SA N+ + Sbjct: 58 GEKG--PSAINVVAI 70 >gi|223043029|ref|ZP_03613077.1| conserved domain protein [Staphylococcus capitis SK14] gi|314933099|ref|ZP_07840464.1| conserved domain protein [Staphylococcus caprae C87] gi|222443883|gb|EEE49980.1| conserved domain protein [Staphylococcus capitis SK14] gi|313653249|gb|EFS17006.1| conserved domain protein [Staphylococcus caprae C87] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E +G DVF+H SA+ G +L EGQ V +D V+ + Sbjct: 1 MNNGTVKWFNSEKGFGFIERE----NGGDVFVHFSAIVEDGYKSLEEGQNVEFDIVEGE- 55 Query: 62 NGKYSAENLKL 72 G+ +A +K+ Sbjct: 56 RGEQAANVVKM 66 >gi|317491427|ref|ZP_07949863.1| cold shock domain-containing protein CspD [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920974|gb|EFV42297.1| cold shock domain-containing protein CspD [Enterobacteriaceae bacterium 9_2_54FAA] Length = 73 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + G+D+F H S++ G L GQ V ++ VQ Sbjct: 1 METGTVKWFNNAKGFGFICP---LKGGEDIFAHYSSIQMEGYRTLKAGQQVQFN-VQEGP 56 Query: 62 NGKYSAENLKLVPKSSN 78 G ++ +VP S Sbjct: 57 KGNHA---NTIVPIESE 70 >gi|296532321|ref|ZP_06895059.1| CspA family cold shock transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296267345|gb|EFH13232.1| CspA family cold shock transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P + G DVF+H +AV AGL L E Q ++YD V Sbjct: 1 MAIGTVKWFNATKGFGFIVP---QDGGKDVFVHITAVQKAGLQGLNENQKISYDVVME-- 55 Query: 62 NGKYSAENLKLV 73 GK +A NLK + Sbjct: 56 RGKAAATNLKPL 67 >gi|326789721|ref|YP_004307542.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] gi|326540485|gb|ADZ82344.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] Length = 65 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFI E GDDVF+H +A+ G L EGQ V +D V+ + G Sbjct: 2 TGKVKWFNAEKGFGFIERE----GGDDVFVHFTAIQGDGFKTLEEGQEVNFDIVEGN-RG 56 Query: 64 KYSAENLK 71 +A K Sbjct: 57 PQAANVTK 64 >gi|255263028|ref|ZP_05342370.1| conserved domain protein [Thalassiobium sp. R2A62] gi|255105363|gb|EET48037.1| conserved domain protein [Thalassiobium sp. R2A62] Length = 68 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G+DVF+H SAV +G+ L + Q V ++ + Sbjct: 1 MASGTVKWFNTTKGFGFIAPD---DGGNDVFVHISAVERSGMTGLADDQKVEFELEEG-R 56 Query: 62 NGKYSAENLKLV 73 +G+ A NLK V Sbjct: 57 DGRQMAGNLKAV 68 >gi|238758373|ref|ZP_04619551.1| Cold shock-like protein cspB [Yersinia aldovae ATCC 35236] gi|238703496|gb|EEP96035.1| Cold shock-like protein cspB [Yersinia aldovae ATCC 35236] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP + DVF+H SA+ S L EGQ V + ++ A G Sbjct: 2 TGLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ESGAKG 57 Query: 64 KYSAENLKL 72 +A + L Sbjct: 58 PAAANVVVL 66 >gi|254248343|ref|ZP_04941663.1| Cold shock protein [Burkholderia cenocepacia PC184] gi|124874844|gb|EAY64834.1| Cold shock protein [Burkholderia cenocepacia PC184] Length = 83 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+N KG+GFI+P+ GDD+F H S + G L EGQ V+++ + Sbjct: 17 VDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSFEVKRGPK 73 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 74 G--LQASNIT 81 >gi|117929224|ref|YP_873775.1| cold-shock DNA-binding protein family protein [Acidothermus cellulolyticus 11B] gi|117649687|gb|ABK53789.1| cold-shock DNA-binding protein family [Acidothermus cellulolyticus 11B] Length = 65 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI + G DVF+H SA+ G L E Q V ++ Q Sbjct: 2 QGVVKWFNAEKGFGFIAVD----GGSDVFVHYSAIQGEGYRTLAENQRVDFEITQGQKG- 56 Query: 64 KYSAENLKLV 73 A N++ + Sbjct: 57 -PQAANVRPI 65 >gi|126698469|ref|YP_001087366.1| cold shock protein [Clostridium difficile 630] gi|254974514|ref|ZP_05270986.1| cold shock protein [Clostridium difficile QCD-66c26] gi|255091905|ref|ZP_05321383.1| cold shock protein [Clostridium difficile CIP 107932] gi|255100004|ref|ZP_05328981.1| cold shock protein [Clostridium difficile QCD-63q42] gi|255305891|ref|ZP_05350063.1| cold shock protein [Clostridium difficile ATCC 43255] gi|255313639|ref|ZP_05355222.1| cold shock protein [Clostridium difficile QCD-76w55] gi|255516323|ref|ZP_05383999.1| cold shock protein [Clostridium difficile QCD-97b34] gi|255649422|ref|ZP_05396324.1| cold shock protein [Clostridium difficile QCD-37x79] gi|255654944|ref|ZP_05400353.1| cold shock protein [Clostridium difficile QCD-23m63] gi|260682590|ref|YP_003213875.1| cold shock protein [Clostridium difficile CD196] gi|260686190|ref|YP_003217323.1| cold shock protein [Clostridium difficile R20291] gi|296449689|ref|ZP_06891459.1| cold shock protein CspA [Clostridium difficile NAP08] gi|296877994|ref|ZP_06902013.1| cold shock protein CspA [Clostridium difficile NAP07] gi|306519503|ref|ZP_07405850.1| cold shock protein [Clostridium difficile QCD-32g58] gi|115249906|emb|CAJ67725.1| Cold shock protein [Clostridium difficile] gi|260208753|emb|CBA61608.1| cold shock protein [Clostridium difficile CD196] gi|260212206|emb|CBE02896.1| cold shock protein [Clostridium difficile R20291] gi|296261413|gb|EFH08238.1| cold shock protein CspA [Clostridium difficile NAP08] gi|296431062|gb|EFH16890.1| cold shock protein CspA [Clostridium difficile NAP07] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI+ EG DDVF+H SA+ + G L EG+ V++D Q + Sbjct: 1 MKNGIVKWFNNEKGFGFISVEGE----DDVFVHFSAIQNDGYKTLEEGEKVSFDITQGNR 56 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 57 G--PQAENVNRI 66 >gi|146280285|ref|YP_001170441.1| hypothetical protein Rsph17025_4290 [Rhodobacter sphaeroides ATCC 17025] gi|145558526|gb|ABP73136.1| hypothetical protein Rsph17025_4290 [Rhodobacter sphaeroides ATCC 17025] Length = 68 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P DVF+H +A+ AG+ L +GQ VTYD + D Sbjct: 1 MANGTVKWFNATKGFGFIAP---AHGSKDVFVHVTALERAGIHQLNDGQAVTYDM-ETDR 56 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 57 NGRESATNLVL 67 >gi|38232941|ref|NP_938708.1| cold-shock protein [Corynebacterium diphtheriae NCTC 13129] gi|38199199|emb|CAE48825.1| cold-shock protein [Corynebacterium diphtheriae] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H S + G L E Q V ++ + Sbjct: 1 MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQKVEFEVGEGAK 57 Query: 62 NGKYSAENLKLV 73 A+ ++ + Sbjct: 58 G--PQAQQVRAI 67 >gi|290473777|ref|YP_003466651.1| Qin prophage; cold shock protein [Xenorhabdus bovienii SS-2004] gi|289173084|emb|CBJ79857.1| Qin prophage; cold shock protein [Xenorhabdus bovienii SS-2004] Length = 71 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V++ V++ A G Sbjct: 6 TGTVKWFNSDKGFGFISP---KDGSKDVFVHFSAIQSNDYKTLDEGQEVSFS-VESGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSATNVIAL 70 >gi|262274512|ref|ZP_06052323.1| cold shock protein CspD [Grimontia hollisae CIP 101886] gi|262221075|gb|EEY72389.1| cold shock protein CspD [Grimontia hollisae CIP 101886] Length = 73 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ E D+F H S + G L GQ V Y+ VQ Sbjct: 1 MATGTVKWFNNAKGFGFICPD---EGEGDIFAHYSTIQMDGYRTLKAGQTVNYE-VQEGP 56 Query: 62 NGKYSAENLKL 72 G ++++ + + Sbjct: 57 KGYHASQIVPV 67 >gi|239926846|ref|ZP_04683799.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291435186|ref|ZP_06574576.1| cold shock protein scoF [Streptomyces ghanaensis ATCC 14672] gi|291338081|gb|EFE65037.1| cold shock protein scoF [Streptomyces ghanaensis ATCC 14672] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S + ++G L EGQ VT+D Q Sbjct: 1 MASGTVKWFNAEKGFGFIAQDG---GGPDVFAHYSNINASGFRELQEGQAVTFDVTQGQK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENIT 65 >gi|330467479|ref|YP_004405222.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] gi|328810450|gb|AEB44622.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFI+ + + G DVF H SA++++G +L E Q V ++ Q Sbjct: 1 MATGTVKWFNGDKGFGFISQD---DGGADVFAHFSAISASGFRSLDENQRVQFEITQGPK 57 Query: 62 NGKYS 66 + S Sbjct: 58 GPQAS 62 >gi|319653577|ref|ZP_08007676.1| cold-shock domain family protein [Bacillus sp. 2_A_57_CT2] gi|317394776|gb|EFV75515.1| cold-shock domain family protein [Bacillus sp. 2_A_57_CT2] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MENGKVKWFNSEKGFGFIERE----GGEDVFVHFSAIQGEGYKSLEEGQEVTFDVEQGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--AQAANVR 64 >gi|206602877|gb|EDZ39358.1| cold shock protein [Leptospirillum sp. Group II '5-way CG'] Length = 68 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KGYGFI+ E +G+D+F+H SA+ +G L EGQLV ++ Q+ A Sbjct: 1 MARGHVKWFNANKGYGFISQE----NGEDIFVHYSAIGGSGFKTLEEGQLVEFEI-QSGA 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 KGPQAANVQKV 66 >gi|3891780|pdb|3MEF|A Chain A, Major Cold-Shock Protein From Escherichia Coli Solution Nmr Structure Length = 69 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H SA+ + G +L EGQ V++ ++ A G Sbjct: 5 TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 60 Query: 64 KYSAENLKL 72 + L Sbjct: 61 PAAGNVTSL 69 >gi|325571663|ref|ZP_08147113.1| cold-shock domain family protein [Enterococcus casseliflavus ATCC 12755] gi|325155708|gb|EGC67905.1| cold-shock domain family protein [Enterococcus casseliflavus ATCC 12755] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N DKG+GFIT E G DVF H SA+ + G +L EGQ VT+D + Sbjct: 1 MNKGTVKWFNSDKGFGFIT----GEDGQDVFAHFSAIQADGFKSLDEGQAVTFD-TEEGQ 55 Query: 62 NGKYSAE 68 G +A Sbjct: 56 RGLQAAN 62 >gi|283796457|ref|ZP_06345610.1| cold shock protein [Clostridium sp. M62/1] gi|291075865|gb|EFE13229.1| cold shock protein [Clostridium sp. M62/1] gi|295091398|emb|CBK77505.1| cold-shock DNA-binding protein family [Clostridium cf. saccharolyticum K10] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H+G++KW+N KGYGFI E G+DVF+H S + G +L EG V ++ V N A Sbjct: 1 MHKGTVKWFNNQKGYGFIC----DEEGNDVFVHYSGLNMEGFKSLDEGAQVEFEVV-NGA 55 Query: 62 NGKYSAENLKL 72 G + KL Sbjct: 56 KGPQATNVTKL 66 >gi|254429153|ref|ZP_05042860.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881] gi|196195322|gb|EDX90281.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881] Length = 84 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGF+ P+ E G+D+F+H S + G +L GQ V Y+ A Sbjct: 1 MATGRVKWFNNAKGYGFVRPD---EGGEDLFVHYSYIQMDGYKSLKAGQPVEYEV--QPA 55 Query: 62 NGKYSAENLKLVPKSSN 78 N + A NL+ ++SN Sbjct: 56 NKGFHAINLRANEEASN 72 >gi|187921398|ref|YP_001890430.1| cold-shock DNA-binding domain-containing protein [Burkholderia phytofirmans PsJN] gi|187719836|gb|ACD21059.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S ++ G L E Q V+++ Q Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGDGFKTLAENQKVSFETKQGPK 57 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 58 G--LQAANIKPL 67 >gi|108759696|ref|YP_631543.1| CspA family cold-shock protein [Myxococcus xanthus DK 1622] gi|108463576|gb|ABF88761.1| cold-shock protein, CspA family [Myxococcus xanthus DK 1622] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI +G G+D+F H +A+ + G L EGQ V +D + Sbjct: 1 MATGTVKWFNDAKGFGFIMQDG---GGEDLFCHHTAIQTQGFRTLQEGQKVEFDVARGPK 57 Query: 62 NGKYSAENLKLV 73 A+N++ V Sbjct: 58 G--LQAQNVRPV 67 >gi|257078464|ref|ZP_05572825.1| cold-shock protein [Enterococcus faecalis JH1] gi|257091195|ref|ZP_05585556.1| cold-shock protein [Enterococcus faecalis CH188] gi|294779596|ref|ZP_06744987.1| major cold shock protein CspA [Enterococcus faecalis PC1.1] gi|307269865|ref|ZP_07551192.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|312902662|ref|ZP_07761867.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|256986494|gb|EEU73796.1| cold-shock protein [Enterococcus faecalis JH1] gi|257000007|gb|EEU86527.1| cold-shock protein [Enterococcus faecalis CH188] gi|294453253|gb|EFG21664.1| major cold shock protein CspA [Enterococcus faecalis PC1.1] gi|306513772|gb|EFM82377.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|310634000|gb|EFQ17283.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|315162264|gb|EFU06281.1| major cold shock protein CspA [Enterococcus faecalis TX0645] gi|315579305|gb|EFU91496.1| major cold shock protein CspA [Enterococcus faecalis TX0630] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFIT E G+DVF H SA+ + G L EGQ VT+D + Sbjct: 1 MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQTDGFKTLDEGQTVTFDTEEGPR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--PQATNI 63 >gi|225568420|ref|ZP_03777445.1| hypothetical protein CLOHYLEM_04497 [Clostridium hylemonae DSM 15053] gi|225162648|gb|EEG75267.1| hypothetical protein CLOHYLEM_04497 [Clostridium hylemonae DSM 15053] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++RG++KW+N KGYGFI+ E+G+DVF+H S + G +L EGQ V ++ + Sbjct: 1 MNRGTVKWFNNQKGYGFIS----DETGNDVFVHYSGLNMDGFKSLEEGQEVEFEVTEGSK 56 Query: 62 NGKYSAENLKLV 73 A N+ V Sbjct: 57 G--PQAVNVTRV 66 >gi|149182147|ref|ZP_01860630.1| CspB [Bacillus sp. SG-1] gi|148850179|gb|EDL64346.1| CspB [Bacillus sp. SG-1] Length = 65 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI EG +DVF+H SA+ G L EGQ V+++ ++ A Sbjct: 1 MLQGKVKWFNAEKGFGFIEVEGQ----EDVFVHFSAIQGEGFKTLEEGQTVSFEI-EDGA 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|119475889|ref|ZP_01616241.1| Cold shock protein [marine gamma proteobacterium HTCC2143] gi|119450516|gb|EAW31750.1| Cold shock protein [marine gamma proteobacterium HTCC2143] Length = 69 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF+H SA+ S+G L EGQ V + Q Sbjct: 6 TGTVKWFNESKGFGFIEQE----SGPDVFVHFSAINSSGFKTLAEGQKVEFTVTQGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 61 -PQAENVVPL 69 >gi|294142287|ref|YP_003558265.1| cold shock-like protein cspG [Shewanella violacea DSS12] gi|22256741|sp|Q9S170|CSPG_SHEVD RecName: Full=Cold shock-like protein CspG gi|5869509|dbj|BAA84218.1| CspG [Shewanella violacea] gi|293328756|dbj|BAJ03487.1| cold shock-like protein cspG [Shewanella violacea DSS12] Length = 70 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + GDDVF+H ++ S G L EGQ V+++ Q G Sbjct: 6 TGLVKWFNEEKGFGFITQD---NGGDDVFVHFRSITSDGFKTLAEGQKVSFEVEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 LQAANVVAL 70 >gi|253681971|ref|ZP_04862768.1| conserved domain protein [Clostridium botulinum D str. 1873] gi|253561683|gb|EES91135.1| conserved domain protein [Clostridium botulinum D str. 1873] Length = 65 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT TE G+DVF H S + G L EGQ V++D V+ Sbjct: 2 TGTVKWFNAEKGFGFIT----TEEGNDVFAHFSQINREGFKTLDEGQNVSFDVVEGAKG- 56 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 57 -PQAENITIL 65 >gi|297583376|ref|YP_003699156.1| cold-shock DNA-binding domain-containing protein [Bacillus selenitireducens MLS10] gi|297141833|gb|ADH98590.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens MLS10] Length = 65 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ V+ A G Sbjct: 2 QGKVKWFNAEKGFGFIERE----DGEDVFVHYSAIDQEGFKTLDEGQDVEFEVVEG-ARG 56 Query: 64 KYSAENLKL 72 ++ +KL Sbjct: 57 PQASNVVKL 65 >gi|161507089|ref|YP_001577043.1| putative cold shock protein [Lactobacillus helveticus DPC 4571] gi|160348078|gb|ABX26752.1| putative cold shock protein [Lactobacillus helveticus DPC 4571] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT DVF+H SA+ + G +L EGQ V+YD Q + Sbjct: 1 MQTGTVKWFNADKGFGFIT----GSDNKDVFVHFSAIKTDGFKSLEEGQKVSYDVEQG-S 55 Query: 62 NGKYSAENL 70 G + + Sbjct: 56 RGPQATNVV 64 >gi|331017260|gb|EGH97316.1| cold shock domain family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 77 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G + +D+F H SA+ G L GQ V ++ +Q Sbjct: 3 MLNGKVKWFNNAKGYGFILEDGKPD--EDLFAHYSAIQMDGYKTLKAGQPVRFEIIQGPK 60 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 61 G--LHAVNIQ 68 >gi|228990713|ref|ZP_04150678.1| Cold shock-like protein cspB [Bacillus pseudomycoides DSM 12442] gi|228996815|ref|ZP_04156449.1| Cold shock-like protein cspB [Bacillus mycoides Rock3-17] gi|229004492|ref|ZP_04162232.1| Cold shock-like protein cspB [Bacillus mycoides Rock1-4] gi|228756753|gb|EEM06058.1| Cold shock-like protein cspB [Bacillus mycoides Rock1-4] gi|228762876|gb|EEM11789.1| Cold shock-like protein cspB [Bacillus mycoides Rock3-17] gi|228769239|gb|EEM17837.1| Cold shock-like protein cspB [Bacillus pseudomycoides DSM 12442] Length = 65 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E DDVF+H +A+ G L EGQ V++D V+ + G Sbjct: 2 QGKVKWFNNEKGFGFIE----IEGADDVFVHFTAIQGEGYKALEEGQEVSFDIVEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|52220784|ref|YP_086797.1| putative cold shock protein [Lactobacillus plantarum] gi|254555218|ref|YP_003061635.1| cold shock protein CspL [Lactobacillus plantarum JDM1] gi|300766776|ref|ZP_07076690.1| cold-shock protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|21541531|gb|AAM61873.1|AF508808_2 cold shock protein [Lactobacillus plantarum] gi|51965675|emb|CAF32413.1| putative cold shock protein [Lactobacillus plantarum] gi|254044145|gb|ACT60938.1| cold shock protein CspL [Lactobacillus plantarum JDM1] gi|300495652|gb|EFK30806.1| cold-shock protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT DVF+H S++ + G +L EGQ V+Y+ Q D Sbjct: 1 MQSGTVKWFNADKGFGFIT----GSDNKDVFVHFSSIQTDGFKSLDEGQKVSYEVEQGD- 55 Query: 62 NGKYSAENL 70 G + + Sbjct: 56 RGPQATNVV 64 >gi|262040627|ref|ZP_06013865.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041991|gb|EEW43024.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 70 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + D+F+H SA+ + G +L EGQ V++ ++ A G Sbjct: 6 TGIVKWFNADKGFGFITPD---DGSKDLFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKG 61 Query: 64 KYSAENLK 71 +A N+ Sbjct: 62 P-AAGNVT 68 >gi|226304000|ref|YP_002763958.1| cold shock protein [Rhodococcus erythropolis PR4] gi|229494807|ref|ZP_04388563.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|226183115|dbj|BAH31219.1| probable cold shock protein [Rhodococcus erythropolis PR4] gi|229318303|gb|EEN84168.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H S + G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAPE---DGSADVFVHYSEIQGNGFRTLEENQRVEFEVGQGTK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|297197159|ref|ZP_06914556.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|197716555|gb|EDY60589.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MAKGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIAAQGFRELQEGQKVEFDVTQGQK 57 Query: 62 NGKYSAENLK 71 AEN++ Sbjct: 58 G--PQAENIR 65 >gi|221133721|ref|ZP_03560026.1| putative cold shock-like protein cspG [Glaciecola sp. HTCC2999] Length = 69 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKGYGFIT + G DVF+H A+ S G L EGQ V+++ + Sbjct: 5 TGSVKWFNADKGYGFITQD---NGGKDVFVHFRAIQSEGYKTLPEGQKVSFEIEEGQKG- 60 Query: 64 KYSAENLKLV 73 A N+ + Sbjct: 61 -LQAANVNAI 69 >gi|78044182|ref|YP_359029.1| cold shock protein CspC [Carboxydothermus hydrogenoformans Z-2901] gi|77996297|gb|ABB15196.1| cold shock protein CspC [Carboxydothermus hydrogenoformans Z-2901] Length = 65 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KGYGFI E G DVF+H SA+ G L EGQ V ++ V+ G Sbjct: 2 QGKVKWFDPAKGYGFIERE----DGGDVFVHFSAIKGNGFKTLEEGQRVEFNIVEGT-RG 56 Query: 64 KYSAENLKL 72 +A+ +KL Sbjct: 57 PQAADVVKL 65 >gi|317126004|ref|YP_004100116.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] gi|315590092|gb|ADU49389.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ S G L EGQ V +D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFVHYSAIESGGYRELQEGQKVEFDVTQGPK 57 Query: 62 NGKYSAENLK 71 AE ++ Sbjct: 58 G--PQAEKVR 65 >gi|167565863|ref|ZP_02358779.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis EO147] gi|167574414|ref|ZP_02367288.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis C6786] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S + G L E Q V+Y+ + Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRGDGFKTLAENQKVSYETKRGPK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--LQASNITPL 67 >gi|308274453|emb|CBX31052.1| Cold shock-like protein cspLA [uncultured Desulfobacterium sp.] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E +G+DVF+H SA+ S G +L+EG VT+D V N Sbjct: 1 MANGTVKWFNDRKGFGFIEQE----NGNDVFVHHSAINSNGFKSLSEGDRVTFDVV-NGP 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 KGPGAANVTKL 66 >gi|302871348|ref|YP_003839984.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor obsidiansis OB47] gi|312128141|ref|YP_003993015.1| cold-shock DNA-binding domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|312134639|ref|YP_004001977.1| cold-shock DNA-binding domain-containing protein [Caldicellulosiruptor owensensis OL] gi|312622949|ref|YP_004024562.1| cold-shock DNA-binding domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312794129|ref|YP_004027052.1| cold-shock DNA-binding domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|302574207|gb|ADL41998.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor obsidiansis OB47] gi|311774690|gb|ADQ04177.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor owensensis OL] gi|311778160|gb|ADQ07646.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor hydrothermalis 108] gi|312181269|gb|ADQ41439.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312203416|gb|ADQ46743.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+NP+KGYGFI S ++G+DVF+H SA+ G L EGQ V +D V+ + Sbjct: 2 RGRVKWFNPEKGYGFI----SADNGEDVFVHFSAINMEGYKTLAEGQTVEFDIVKTERG- 56 Query: 64 KYSAENLKLVP 74 A N++ V Sbjct: 57 -NQAMNVRKVK 66 >gi|225873243|ref|YP_002754702.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] gi|225794371|gb|ACO34461.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] Length = 72 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++G +KW+N KGYGFI + G DVF+H SA+ G +L EG V +D VQ Sbjct: 4 YKGKVKWFNNAKGYGFI----GRDDGPDVFVHYSAIQIDGYKSLKEGDEVEFDIVQGQKG 59 Query: 63 GK 64 + Sbjct: 60 PQ 61 >gi|328883551|emb|CCA56790.1| cold shock protein [Streptomyces venezuelae ATCC 10712] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ V++D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIAASGFRELQEGQKVSFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|255587236|ref|XP_002534193.1| cold shock domain containing proteins, putative [Ricinus communis] gi|223525720|gb|EEF28187.1| cold shock domain containing proteins, putative [Ricinus communis] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E G+D+F H S + + G +L E Q V+++ V+ Sbjct: 1 MATGTVKWFNDAKGFGFITPD---EGGEDLFAHFSEIKTEGFKSLQENQKVSFE-VKMGP 56 Query: 62 NGKYSAENLKLV 73 GK +A N+K V Sbjct: 57 KGKQAA-NIKPV 67 >gi|161526063|ref|YP_001581075.1| cold-shock DNA-binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|167587642|ref|ZP_02380030.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu] gi|189349222|ref|YP_001944850.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|221201715|ref|ZP_03574753.1| cold-shock domain family protein [Burkholderia multivorans CGD2M] gi|221207210|ref|ZP_03580220.1| cold-shock domain family protein [Burkholderia multivorans CGD2] gi|221213338|ref|ZP_03586313.1| cold-shock domain family protein [Burkholderia multivorans CGD1] gi|160343492|gb|ABX16578.1| cold-shock DNA-binding domain protein [Burkholderia multivorans ATCC 17616] gi|189333244|dbj|BAG42314.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|221166790|gb|EED99261.1| cold-shock domain family protein [Burkholderia multivorans CGD1] gi|221172798|gb|EEE05235.1| cold-shock domain family protein [Burkholderia multivorans CGD2] gi|221178531|gb|EEE10940.1| cold-shock domain family protein [Burkholderia multivorans CGD2M] gi|325518815|gb|EGC98394.1| CspA family cold shock protein [Burkholderia sp. TJI49] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITPEG GDD+F H S + G L E Q V ++ V+ Sbjct: 1 MATGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVEGFKTLQENQKVEFE-VKTGP 56 Query: 62 NGKYSAE 68 G +A Sbjct: 57 KGLQAAN 63 >gi|238026086|ref|YP_002910317.1| Cold shock-like protein CspD [Burkholderia glumae BGR1] gi|330815379|ref|YP_004359084.1| Cold shock-like protein CspD [Burkholderia gladioli BSR3] gi|237875280|gb|ACR27613.1| Cold shock-like protein CspD [Burkholderia glumae BGR1] gi|327367772|gb|AEA59128.1| Cold shock-like protein CspD [Burkholderia gladioli BSR3] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITPEG GDD+F H S + G L E Q V ++ V+ Sbjct: 1 MATGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVDGFKTLQENQKVEFE-VKTGP 56 Query: 62 NGKYSAENLKLV 73 G +A N+K + Sbjct: 57 KGLQAA-NIKPL 67 >gi|59713778|ref|YP_206553.1| cold shock protein [Vibrio fischeri ES114] gi|197337528|ref|YP_002158152.1| hypothetical protein VFMJ11_A0603 [Vibrio fischeri MJ11] gi|59482026|gb|AAW87665.1| cold shock protein [Vibrio fischeri ES114] gi|197314780|gb|ACH64229.1| conserved domain protein [Vibrio fischeri MJ11] Length = 68 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI E +G DVF H S + S G L EGQ V++D Q G Sbjct: 5 TGTVKWFNEEKGFGFIAQE----NGPDVFAHFSQIQSEGFKTLKEGQAVSFDVEQGQ-KG 59 Query: 64 KYSAENLKL 72 +A + L Sbjct: 60 PQAANIVAL 68 >gi|300782274|ref|YP_003762565.1| cold shock protein CspA [Amycolatopsis mediterranei U32] gi|299791788|gb|ADJ42163.1| cold shock protein CspA [Amycolatopsis mediterranei U32] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFITP+ G DVF+H S + G +L E V ++ Q Sbjct: 1 MTQGTVKWFNSEKGFGFITPD---NGGGDVFVHYSEIQGNGFKSLEENARVEFEIGQGQK 57 Query: 62 NGKYSAENL 70 + ++ + Sbjct: 58 GPQATSVTV 66 >gi|291523520|emb|CBK81813.1| cold-shock DNA-binding protein family [Coprococcus catus GD/7] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KG+GFI S E G+DVF+H S + S G +L EGQ V ++ ++ Sbjct: 1 MNKGTVKWFNNQKGFGFI----SDEQGNDVFVHYSGIQSNGFKSLEEGQEVEFEVIEGQ- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 KGPQAVNVVKL 66 >gi|209809774|ref|YP_002265313.1| cold shock-like protein CspG [Aliivibrio salmonicida LFI1238] gi|208011337|emb|CAQ81788.1| cold shock-like protein CspG [Aliivibrio salmonicida LFI1238] Length = 69 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 5 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 60 Query: 64 KYSAENL 70 +A + Sbjct: 61 PQAANVV 67 >gi|326789294|ref|YP_004307115.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] gi|326540058|gb|ADZ81917.1| cold-shock DNA-binding domain protein [Clostridium lentocellum DSM 5427] Length = 65 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI+ E GDDVF+H SA+ G +L EGQ V +D + Sbjct: 2 TGTVKWFNAEKGFGFISRE----GGDDVFVHFSAIQGDGFKSLEEGQAVNFDITKGPRG- 56 Query: 64 KYSAENLK 71 AEN+ Sbjct: 57 -AQAENVT 63 >gi|50955888|ref|YP_063176.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952370|gb|AAT90071.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFI P+ + DVF H + + G L E Q V Y+ Q Sbjct: 1 MAIGTVKWFNAEKGYGFIAPD---DGSVDVFAHFREIQTQGFRTLEENQKVEYELTQGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 58 G--MQASNIRAV 67 >gi|331005216|ref|ZP_08328609.1| Cold shock protein CspC [gamma proteobacterium IMCC1989] gi|330420959|gb|EGG95232.1| Cold shock protein CspC [gamma proteobacterium IMCC1989] Length = 68 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF H SA+ +G LTEGQ V + Q Sbjct: 5 TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAIQGSGFKTLTEGQKVEFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ V Sbjct: 60 -PQAENINPV 68 >gi|298292419|ref|YP_003694358.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296928930|gb|ADH89739.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 71 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N +KGYGFI P+ + G DVF+H SAV +GL L EGQ V+++ + Sbjct: 1 MATMGTVKFFNTEKGYGFIRPD---DGGRDVFVHVSAVTRSGLGTLAEGQRVSFEVEPDK 57 Query: 61 ANGKYSAENLKL 72 A +L+L Sbjct: 58 RGKGPKAIDLQL 69 >gi|291534217|emb|CBL07330.1| cold-shock DNA-binding protein family [Megamonas hypermegale ART12/1] Length = 71 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 4/74 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFIT + + D+F+H SA+ S G L EGQ VT+D + Sbjct: 1 MGTGTVKWFNSGKGYGFITND---DGSGDLFVHFSAINSEGFKTLEEGQKVTFDTEADSR 57 Query: 62 NG-KYSAENLKLVP 74 + K A N+ +V Sbjct: 58 DASKLRAVNVTVVK 71 >gi|311067393|ref|YP_003972316.1| CspB protein [Bacillus atrophaeus 1942] gi|310867910|gb|ADP31385.1| CspB [Bacillus atrophaeus 1942] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 MLEGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQTVSFEIVEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|307243261|ref|ZP_07525432.1| major cold shock protein CspA [Peptostreptococcus stomatis DSM 17678] gi|306493389|gb|EFM65371.1| major cold shock protein CspA [Peptostreptococcus stomatis DSM 17678] Length = 66 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI+ EG +D+F+H SA+ G +L EGQ V ++ V + Sbjct: 1 MKIGTVKWFNNEKGFGFISVEGE----NDMFVHFSAIQGDGYKSLEEGQKVEFEVV-DGE 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGPQAANVTRI 66 >gi|295107075|emb|CBL04618.1| cold-shock DNA-binding protein family [Gordonibacter pamelaeae 7-10-1-b] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP+KGYGFI+ G+D+F+H S + G L EGQ V +D Sbjct: 1 MAEGTVKWFNPEKGYGFISQ----NDGEDLFVHFSEIKMDGFKTLDEGQAVQFDVT-TGQ 55 Query: 62 NGKYSAENLK 71 NGK A N+ Sbjct: 56 NGKLQASNVT 65 >gi|239940492|ref|ZP_04692429.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998] gi|239986973|ref|ZP_04707637.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379] gi|291443921|ref|ZP_06583311.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|291346868|gb|EFE73772.1| cold shock protein [Streptomyces roseosporus NRRL 15998] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S + ++G L EGQ V++D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNINASGFRELQEGQKVSFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|239930071|ref|ZP_04687024.1| putative cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291438408|ref|ZP_06577798.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291341303|gb|EFE68259.1| cold shock protein [Streptomyces ghanaensis ATCC 14672] Length = 67 Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ VT+D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|297583350|ref|YP_003699130.1| cold-shock DNA-binding domain-containing protein [Bacillus selenitireducens MLS10] gi|297141807|gb|ADH98564.1| cold-shock DNA-binding domain protein [Bacillus selenitireducens MLS10] Length = 65 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V +D Q Sbjct: 1 MTQGTVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLDEGQTVNFDIEQGQ- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|91783230|ref|YP_558436.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|91687184|gb|ABE30384.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ GDD+F H S + G L E Q V+Y+ + Sbjct: 1 MDTGTVKWFNDSKGFGFITPDA---GGDDLFAHFSEIRGDGFKTLAENQKVSYE-TKRGP 56 Query: 62 NGKYSAE 68 G +A Sbjct: 57 KGMQAAN 63 >gi|16077975|ref|NP_388791.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|221308749|ref|ZP_03590596.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313071|ref|ZP_03594876.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317997|ref|ZP_03599291.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221322271|ref|ZP_03603565.1| major cold-shock protein [Bacillus subtilis subsp. subtilis str. SMY] gi|296332331|ref|ZP_06874792.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673610|ref|YP_003865282.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis subsp. spizizenii str. W23] gi|321314635|ref|YP_004206922.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis BSn5] gi|416834|sp|P32081|CSPB_BACSU RecName: Full=Cold shock protein CspB; AltName: Full=Major cold shock protein gi|114793771|pdb|2ES2|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Cold Shock Protein Bs-Cspb In Complex With Hexathymidine gi|116667125|pdb|2F52|A Chain A, Solution Structure Of Cold Shock Protein Cspb From Bacillus Subtilis In Complex With Heptathymidine gi|157830704|pdb|1CSP|A Chain A, Crystal Structure Of The Bacillus Subtilis Major Cold Shock Protein, Cspb: A Universal Nucleic-Acid Binding Domain gi|157830705|pdb|1CSQ|A Chain A, Crystal Structure Of The Bacillus Subtilis Major Cold Shock Protein, Cspb: A Universal Nucleic-Acid Binding Domain gi|157832148|pdb|1NMF|A Chain A, Major Cold-Shock Protein, Nmr, 20 Structures gi|157832149|pdb|1NMG|A Chain A, Major Cold-Shock Protein, Nmr, Minimized Average Structure gi|297761|emb|CAA42235.1| cold shock protein (CspB) [Bacillus subtilis] gi|1239985|emb|CAA65693.1| cold shock protein [Bacillus subtilis subsp. subtilis str. 168] gi|1336658|gb|AAB01346.1| cold shock protein CspB [Bacillus subtilis subsp. subtilis str. JH642] gi|2633233|emb|CAB12738.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis subsp. subtilis str. 168] gi|291483360|dbj|BAI84435.1| major cold-shock protein [Bacillus subtilis subsp. natto BEST195] gi|296150249|gb|EFG91137.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411854|gb|ADM36973.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis subsp. spizizenii str. W23] gi|320020909|gb|ADV95895.1| major cold-shock protein, RNA helicase co-factor, RNA co-chaperone [Bacillus subtilis BSn5] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 MLEGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|308188556|ref|YP_003932687.1| Cold shock-like protein cspA [Pantoea vagans C9-1] gi|308059066|gb|ADO11238.1| Cold shock-like protein cspA [Pantoea vagans C9-1] Length = 70 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H SA+ + L EGQ V++ +N A G Sbjct: 6 TGLVKWFNSDKGFGFITPD---DGSKDVFVHFSAIQADNYKTLDEGQKVSFTI-ENGAKG 61 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 62 P-AAGNVTAL 70 >gi|160933904|ref|ZP_02081291.1| hypothetical protein CLOLEP_02766 [Clostridium leptum DSM 753] gi|156866577|gb|EDO59949.1| hypothetical protein CLOLEP_02766 [Clostridium leptum DSM 753] Length = 70 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GF++ + G+DVF+H SA+ G +L EGQ VT+D + Sbjct: 1 MNNGTVKWFNSEKGFGFLSND---NGGEDVFVHFSAIVGEGFKSLAEGQKVTFDTETDPK 57 Query: 62 N-GKYSAENLKLV 73 N K A N+ V Sbjct: 58 NSKKLRAVNVCPV 70 >gi|126735271|ref|ZP_01751017.1| cold shock family protein [Roseobacter sp. CCS2] gi|126715826|gb|EBA12691.1| cold shock family protein [Roseobacter sp. CCS2] Length = 69 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ + G D+F+H SAV +GL L + Q VT+D ++ Sbjct: 1 MPNGTVKWFNTTKGYGFIAPD---DGGADIFVHISAVEQSGLTGLADDQKVTFDLIEG-R 56 Query: 62 NGKYSAENLKLVP 74 +G+ A N+ V Sbjct: 57 DGRQMAGNIAKVE 69 >gi|99080915|ref|YP_613069.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TM1040] gi|99037195|gb|ABF63807.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040] Length = 68 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI EG + DVF+H SAV +GL L +GQ VT++ Q+ Sbjct: 1 MANGTVKWFNSTKGYGFIAVEGRSN---DVFVHISAVERSGLTGLADGQAVTFEI-QSGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA +L L Sbjct: 57 DGRESATDLAL 67 >gi|317053824|ref|YP_004117849.1| cold-shock DNA-binding domain-containing protein [Pantoea sp. At-9b] gi|316951819|gb|ADU71293.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b] Length = 70 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW+N +KG+GFI+PE DVF+H SA+ +L EGQ V + V++ G Sbjct: 6 RGTVKWFNSEKGFGFISPE---NGSKDVFVHYSAIQGTDYRSLDEGQRVEFS-VEDGQKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVVGL 70 >gi|242373029|ref|ZP_04818603.1| cold-shock protein [Staphylococcus epidermidis M23864:W1] gi|242349183|gb|EES40784.1| cold-shock protein [Staphylococcus epidermidis M23864:W1] Length = 75 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E G DVF+H SA+ G +L EGQ V +D V+ + Sbjct: 10 MNNGTVKWFNAEKGFGFIERE----DGGDVFVHFSAIVEDGYKSLEEGQSVEFDIVEGE- 64 Query: 62 NGKYSAENLKL 72 G+ ++ +K+ Sbjct: 65 RGEQASNVVKM 75 >gi|126725654|ref|ZP_01741496.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2150] gi|126704858|gb|EBA03949.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2150] Length = 68 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE + G DVF+H SAV AGL L++ Q V YD + Sbjct: 1 MPNGTVKWFNQTKGFGFIAPE---DGGSDVFVHISAVERAGLTGLSDNQKVQYDLEEG-R 56 Query: 62 NGKYSAENLKL 72 +G+ A N+ L Sbjct: 57 DGRSLAANIVL 67 >gi|16262519|ref|NP_435312.1| CspA8 Cold shock family protein [Sinorhizobium meliloti 1021] gi|307300737|ref|ZP_07580512.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307319148|ref|ZP_07598578.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|14523127|gb|AAK64724.1| CspA8 Cold shock family protein [Sinorhizobium meliloti 1021] gi|306895255|gb|EFN26011.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306904271|gb|EFN34856.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 69 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + DVF+H SAV AG+ ++ EGQ + ++ +++ Sbjct: 1 MTTGTVKWFNSTKGFGFIAPD---DGSADVFVHISAVERAGMNSIVEGQKLGFELERDNK 57 Query: 62 NGKYSAENLK 71 +GK SA L+ Sbjct: 58 SGKMSAGQLR 67 >gi|78062001|ref|YP_371909.1| cold-shock DNA-binding protein family protein [Burkholderia sp. 383] gi|115358813|ref|YP_775951.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria AMMD] gi|134293656|ref|YP_001117392.1| cold-shock DNA-binding protein family protein [Burkholderia vietnamiensis G4] gi|170700879|ref|ZP_02891866.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171318778|ref|ZP_02907917.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|172063543|ref|YP_001811194.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria MC40-6] gi|206563659|ref|YP_002234422.1| putative cold shock protein [Burkholderia cenocepacia J2315] gi|77969886|gb|ABB11265.1| cold-shock DNA-binding protein family [Burkholderia sp. 383] gi|115284101|gb|ABI89617.1| cold-shock DNA-binding protein family [Burkholderia ambifaria AMMD] gi|134136813|gb|ABO57927.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis G4] gi|170134197|gb|EDT02538.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171096010|gb|EDT40941.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|171996060|gb|ACB66978.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MC40-6] gi|198039699|emb|CAR55669.1| putative cold shock protein [Burkholderia cenocepacia J2315] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ GDD+F H S + + G L E Q V+++ Q Sbjct: 1 MDTGIVKWFNDSKGFGFITPD---NGGDDLFAHFSEIRADGFKTLAENQKVSFETKQGPK 57 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 58 G--LQAANIKPL 67 >gi|146311055|ref|YP_001176129.1| cold-shock DNA-binding protein family protein [Enterobacter sp. 638] gi|145317931|gb|ABP60078.1| cold-shock DNA-binding protein family [Enterobacter sp. 638] Length = 73 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V +D V Sbjct: 1 MEMGTVKWFNNAKGFGFICPEG---GGEDIFAHYSTIQMDGYRTLKAGQSVQFD-VHLGP 56 Query: 62 NGKYSAENLKLVPKS 76 G +++ + + ++ Sbjct: 57 KGNHASVIVPIEAEA 71 >gi|330817033|ref|YP_004360738.1| Cold-shock DNA-binding domain protein [Burkholderia gladioli BSR3] gi|327369426|gb|AEA60782.1| Cold-shock DNA-binding domain protein [Burkholderia gladioli BSR3] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFITP+ + G+D+F+H S + G +L + Q V Y+ V+N Sbjct: 1 MNTGTVKWFNDAKGFGFITPD---DGGEDLFVHFSEIKITGFKSLYDNQRVRYE-VRNGP 56 Query: 62 NGKYSAEN 69 GK++A+ Sbjct: 57 KGKHAADV 64 >gi|294816656|ref|ZP_06775298.1| Cold-shock domain family protein [Streptomyces clavuligerus ATCC 27064] gi|294321471|gb|EFG03606.1| Cold-shock domain family protein [Streptomyces clavuligerus ATCC 27064] Length = 74 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT++ VQ Sbjct: 8 RQNGTVKWFNDEKGYGFITPE----SGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQGQK 63 Query: 62 NGKYSAENLKLV 73 A+ ++++ Sbjct: 64 G--MQADRVQVL 73 >gi|258517067|ref|YP_003193289.1| cold-shock DNA-binding domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780772|gb|ACV64666.1| cold-shock DNA-binding domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 65 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KGYGFI E G DVF+H SA+ S G L EGQ V +D V+ A G Sbjct: 3 GKVKWFSAEKGYGFIERE----DGGDVFVHFSAIQSEGFKTLEEGQEVEFDIVEG-ARGP 57 Query: 65 YSAENLKL 72 +A +K+ Sbjct: 58 QAANVMKV 65 >gi|254387116|ref|ZP_05002389.1| cold shock protein [Streptomyces sp. Mg1] gi|194345934|gb|EDX26900.1| cold shock protein [Streptomyces sp. Mg1] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G LTEGQ V++D Q Sbjct: 1 MALGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELTEGQRVSFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|90581342|ref|ZP_01237138.1| putative Cold shock-like protein [Vibrio angustum S14] gi|90437452|gb|EAS62647.1| putative Cold shock-like protein [Vibrio angustum S14] gi|119116583|dbj|BAF40852.1| cold-shock protein CspV [Photobacterium phosphoreum] Length = 70 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 6 TGLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 LQAANVVAL 70 >gi|51244812|ref|YP_064696.1| cold-shock protein [Desulfotalea psychrophila LSv54] gi|50875849|emb|CAG35689.1| probable cold-shock protein [Desulfotalea psychrophila LSv54] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E GDD+F+H S+++ G L EG V++D Q Sbjct: 1 MAEGTVKWFNDAKGFGFIEQE----GGDDLFVHYSSISGEGFKTLQEGTRVSFDIEQG-P 55 Query: 62 NGKYSAENLKL 72 G +A + L Sbjct: 56 KGPAAANVVVL 66 >gi|207723599|ref|YP_002253998.1| cold shock-like protein cspd [Ralstonia solanacearum MolK2] gi|206588801|emb|CAQ35764.1| cold shock-like protein cspd [Ralstonia solanacearum MolK2] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V ++ Q Sbjct: 1 MASGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMDGFKTLKEGQRVVFEVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQATNIQ 65 >gi|197284583|ref|YP_002150455.1| cold shock-like protein [Proteus mirabilis HI4320] gi|227356765|ref|ZP_03841150.1| cold shock family protein [Proteus mirabilis ATCC 29906] gi|194682070|emb|CAR41608.1| cold shock-like protein [Proteus mirabilis HI4320] gi|227163055|gb|EEI47990.1| cold shock family protein [Proteus mirabilis ATCC 29906] Length = 69 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP G+D+F H S++ G L GQ V Y ++ Sbjct: 1 METGTVKWFNNAKGFGFITP---AAGGEDIFAHYSSIRMEGYRTLKAGQKVNYSTIKGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|312138714|ref|YP_004006050.1| cold shock protein [Rhodococcus equi 103S] gi|311888053|emb|CBH47365.1| cold shock protein [Rhodococcus equi 103S] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI PE + DVF H S + G +L E Q V+YD Q Sbjct: 1 MANGTVKWFNAEKGFGFIAPE---DGSADVFAHYSEIQGGGFRSLDENQRVSYDLGQGAK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--PQATNITAI 67 >gi|229086124|ref|ZP_04218344.1| Cold shock protein cspB [Bacillus cereus Rock3-44] gi|228697183|gb|EEL49948.1| Cold shock protein cspB [Bacillus cereus Rock3-44] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGDGFKTLEEGQEVTFEVEQGN- 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGPQATNVVK 65 >gi|226308783|ref|YP_002768743.1| cold shock protein [Rhodococcus erythropolis PR4] gi|229488570|ref|ZP_04382436.1| putative cold-shock DNA-binding domain protein [Rhodococcus erythropolis SK121] gi|226187900|dbj|BAH36004.1| probable cold shock protein [Rhodococcus erythropolis PR4] gi|229324074|gb|EEN89829.1| putative cold-shock DNA-binding domain protein [Rhodococcus erythropolis SK121] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI P+ + DVF+H S ++ G +L E Q V ++ Q Sbjct: 1 MAQGIVKWFNGEKGFGFIAPD---DGTPDVFVHYSEISGNGYKSLDENQRVEFEVGQGQK 57 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 58 G--PQATNVRAV 67 >gi|33596617|ref|NP_884260.1| cold shock-like protein [Bordetella parapertussis 12822] gi|33601232|ref|NP_888792.1| cold shock-like protein [Bordetella bronchiseptica RB50] gi|33573318|emb|CAE37301.1| cold shock-like protein [Bordetella parapertussis] gi|33575667|emb|CAE32745.1| cold shock-like protein [Bordetella bronchiseptica RB50] Length = 81 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFITPE G D+F H S + + G +L E Q V++ Sbjct: 15 METGVVKWFNAEKGYGFITPEA---GGKDLFAHFSEIQANGFKSLEENQRVSF-VTAMGP 70 Query: 62 NGKYS 66 G + Sbjct: 71 KGPQA 75 >gi|145221984|ref|YP_001132662.1| cold-shock DNA-binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315446276|ref|YP_004079155.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] gi|145214470|gb|ABP43874.1| cold-shock DNA-binding protein family [Mycobacterium gilvum PYR-GCK] gi|315264579|gb|ADU01321.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H + + +G L E Q V ++ Q+ Sbjct: 1 MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|294630558|ref|ZP_06709118.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292833891|gb|EFF92240.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MATGTVKWFNAEKGFGFIQQDG---GGPDVFAHYSNIAAQGFRELQEGQRVNFDVTQGQK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENIT 65 >gi|253733849|ref|ZP_04868014.1| cold-shock protein [Staphylococcus aureus subsp. aureus TCH130] gi|297209461|ref|ZP_06925859.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911485|ref|ZP_07128934.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH70] gi|253728152|gb|EES96881.1| cold-shock protein [Staphylococcus aureus subsp. aureus TCH130] gi|296885922|gb|EFH24857.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887664|gb|EFK82860.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH70] Length = 71 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E +G DVF+H S +AS G L EGQ VT++ + Sbjct: 6 MNNGTVKWFNAEKGFGFIEQE----NGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQR 61 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 62 G--DQAVNVQTV 71 >gi|89072407|ref|ZP_01158986.1| cold shock protein [Photobacterium sp. SKA34] gi|90577241|ref|ZP_01233052.1| cold shock protein [Vibrio angustum S14] gi|89051939|gb|EAR57391.1| cold shock protein [Photobacterium sp. SKA34] gi|90440327|gb|EAS65507.1| cold shock protein [Vibrio angustum S14] Length = 69 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 5 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 LQAANVVAL 69 >gi|266621457|ref|ZP_06114392.1| cold shock protein B [Clostridium hathewayi DSM 13479] gi|288866898|gb|EFC99196.1| cold shock protein B [Clostridium hathewayi DSM 13479] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KGYGFIT + E+G++VF+H S + + G L EGQ VTYD + + Sbjct: 1 MNNGTVKWFNGAKGYGFITND---ETGEEVFVHFSGIMADGYKTLEEGQKVTYDTTEGNR 57 Query: 62 NGKYSAENL 70 A N+ Sbjct: 58 G--LQAVNV 64 >gi|257865258|ref|ZP_05644911.1| cold shock protein CspC [Enterococcus casseliflavus EC30] gi|257871586|ref|ZP_05651239.1| cold shock protein CspC [Enterococcus casseliflavus EC10] gi|257799192|gb|EEV28244.1| cold shock protein CspC [Enterococcus casseliflavus EC30] gi|257805750|gb|EEV34572.1| cold shock protein CspC [Enterococcus casseliflavus EC10] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N DKG+GFIT E+G DVF H SA+ + G +L EGQ VT+D + Sbjct: 1 MNKGTVKWFNADKGFGFIT----GENGQDVFAHFSAIQADGFKSLDEGQAVTFDTEEGQR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--MQAVNI 63 >gi|218134817|ref|ZP_03463621.1| hypothetical protein BACPEC_02720 [Bacteroides pectinophilus ATCC 43243] gi|217990202|gb|EEC56213.1| hypothetical protein BACPEC_02720 [Bacteroides pectinophilus ATCC 43243] Length = 111 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI S ESG+DVF+H S + G +L EG V +D V N A G Sbjct: 48 KGTVKWFNNQKGYGFI----SDESGNDVFVHYSGLNMEGFKSLDEGAEVEFDVV-NGAKG 102 Query: 64 KYSAENLKL 72 + KL Sbjct: 103 PQATNVTKL 111 >gi|153832932|ref|ZP_01985599.1| conserved domain protein [Vibrio harveyi HY01] gi|156976622|ref|YP_001447528.1| hypothetical protein VIBHAR_05396 [Vibrio harveyi ATCC BAA-1116] gi|269963648|ref|ZP_06177971.1| cold shock DNA-binding domain protein [Vibrio harveyi 1DA3] gi|148870855|gb|EDL69754.1| conserved domain protein [Vibrio harveyi HY01] gi|156528216|gb|ABU73301.1| hypothetical protein VIBHAR_05396 [Vibrio harveyi ATCC BAA-1116] gi|269831661|gb|EEZ85797.1| cold shock DNA-binding domain protein [Vibrio harveyi 1DA3] Length = 69 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H SA+ G L EGQ V ++ Q Sbjct: 6 TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAIQGDGFRTLVEGQKVEFEITQGQKG- 60 Query: 64 KYSAENLKLV 73 AE + LV Sbjct: 61 -PQAEKITLV 69 >gi|52079383|ref|YP_078174.1| major cold-shock protein [Bacillus licheniformis ATCC 14580] gi|52784743|ref|YP_090572.1| CspB [Bacillus licheniformis ATCC 14580] gi|154685371|ref|YP_001420532.1| CspB [Bacillus amyloliquefaciens FZB42] gi|308172897|ref|YP_003919602.1| major cold-shock protein [Bacillus amyloliquefaciens DSM 7] gi|319646836|ref|ZP_08001065.1| cold shock protein cspB [Bacillus sp. BT1B_CT2] gi|52002594|gb|AAU22536.1| major cold-shock protein [Bacillus licheniformis ATCC 14580] gi|52347245|gb|AAU39879.1| CspB [Bacillus licheniformis ATCC 14580] gi|154351222|gb|ABS73301.1| CspB [Bacillus amyloliquefaciens FZB42] gi|307605761|emb|CBI42132.1| major cold-shock protein [Bacillus amyloliquefaciens DSM 7] gi|317391424|gb|EFV72222.1| cold shock protein cspB [Bacillus sp. BT1B_CT2] gi|328552537|gb|AEB23029.1| major cold-shock protein [Bacillus amyloliquefaciens TA208] gi|328910937|gb|AEB62533.1| major cold-shock protein [Bacillus amyloliquefaciens LL3] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 MLEGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQSVSFEIVEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|99081593|ref|YP_613747.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TM1040] gi|99037873|gb|ABF64485.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040] Length = 68 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE + DVFLH SAV AG+ + +GQ VT+D +N Sbjct: 1 MANGTVKWFNATKGFGFIQPE---DGTQDVFLHISAVERAGINRIDDGQKVTFDL-ENGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRTSASNLAL 67 >gi|294636901|ref|ZP_06715229.1| conserved domain protein [Edwardsiella tarda ATCC 23685] gi|291089892|gb|EFE22453.1| conserved domain protein [Edwardsiella tarda ATCC 23685] Length = 81 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI + G DVF+H SA+ G L EGQ V Y Q+ Sbjct: 16 KTGQVKWFNESKGFGFIEQH---DGGKDVFVHFSAITGDGFKTLAEGQRVEYTI-QDSPR 71 Query: 63 GKYSAENLKL 72 G +A + L Sbjct: 72 GPAAANVVAL 81 >gi|271965975|ref|YP_003340171.1| cold-shock DNA-binding domain-containing protein [Streptosporangium roseum DSM 43021] gi|270509150|gb|ACZ87428.1| putative cold-shock DNA-binding domain protein [Streptosporangium roseum DSM 43021] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIAAQGYRELQEGQKVSFDITQGQK 57 Query: 62 NGKYSAENLKLV 73 AEN+ V Sbjct: 58 G--PQAENIVPV 67 >gi|223986942|ref|ZP_03636915.1| hypothetical protein HOLDEFILI_04238 [Holdemania filiformis DSM 12042] gi|223961089|gb|EEF65628.1| hypothetical protein HOLDEFILI_04238 [Holdemania filiformis DSM 12042] Length = 69 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N DKGYGFIT + D+F+H S + G +L EGQ V+++ + Sbjct: 1 MSTGKVKWFNGDKGYGFITDDQGQ---GDIFVHFSGINGNGYKSLEEGQKVSFEVENDAR 57 Query: 62 NGKYSAENLKLV 73 + K A N+ ++ Sbjct: 58 SNKSRAVNVTVL 69 >gi|182439288|ref|YP_001827007.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|282862092|ref|ZP_06271155.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|302559563|ref|ZP_07311905.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] gi|326779940|ref|ZP_08239205.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|178467804|dbj|BAG22324.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|282563117|gb|EFB68656.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|302477181|gb|EFL40274.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] gi|320011359|gb|ADW06209.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] gi|326660273|gb|EGE45119.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ V++D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVSFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|152975949|ref|YP_001375466.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024701|gb|ABS22471.1| putative cold-shock DNA-binding domain protein [Bacillus cytotoxicus NVH 391-98] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNAEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN- 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGPQATNVVK 65 >gi|54303583|ref|YP_133576.1| putative cold shock-like protein [Photobacterium profundum SS9] gi|54309095|ref|YP_130115.1| putative cold shock-like protein [Photobacterium profundum SS9] gi|46913527|emb|CAG20313.1| putative Cold shock-like protein [Photobacterium profundum SS9] gi|46917014|emb|CAG23776.1| putative Cold shock-like protein [Photobacterium profundum SS9] Length = 69 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 5 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 60 Query: 64 KYSAENLKL 72 +A + + Sbjct: 61 LQAANVVAI 69 >gi|84497345|ref|ZP_00996167.1| putative cold shock protein [Janibacter sp. HTCC2649] gi|84382233|gb|EAP98115.1| putative cold shock protein [Janibacter sp. HTCC2649] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ S G L EGQ V +D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFVHYSAIESGGYRELQEGQKVEFDVTQGPK 57 Query: 62 NGKYSAENLK 71 AE +K Sbjct: 58 G--PQAEKVK 65 >gi|119717093|ref|YP_924058.1| cold-shock DNA-binding protein family protein [Nocardioides sp. JS614] gi|119537754|gb|ABL82371.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI +G G DVF+H +A+A G +L + Q V ++ Q Sbjct: 1 MAQGTVKWFNDDKGFGFIAQDG---GGPDVFVHHTAIAGTGFKSLKDDQRVEFEVTQGPK 57 Query: 62 NGKYSAENLK 71 AEN++ Sbjct: 58 G--PQAENVR 65 >gi|115474635|ref|NP_001060914.1| Os08g0129200 [Oryza sativa Japonica Group] gi|29467522|dbj|BAC66711.1| putative cold shock protein-1 [Oryza sativa Japonica Group] gi|113622883|dbj|BAF22828.1| Os08g0129200 [Oryza sativa Japonica Group] gi|187609563|gb|ACD13289.1| cold shock domain protein 2 [Oryza sativa Japonica Group] gi|215715378|dbj|BAG95129.1| unnamed protein product [Oryza sativa Japonica Group] Length = 197 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KG+GFITP+ + G+D+F+H+S++ S G +L +G +V + + +G Sbjct: 7 KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVG-SGNDG 62 Query: 64 KYSAENLK 71 + A ++ Sbjct: 63 RTKAVDVT 70 >gi|107027431|ref|YP_624942.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia AU 1054] gi|105896805|gb|ABF79969.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia AU 1054] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFITP+ GDD+F H S + G L EGQ V+Y+ +N Sbjct: 1 MDTGTVKWFNDNKGFGFITPDS---GGDDLFAHFSEIRGDGFKTLAEGQKVSYE-TKNGP 56 Query: 62 NGKYSAENL 70 G ++ + Sbjct: 57 KGLQASNIV 65 >gi|260772638|ref|ZP_05881554.1| cold shock protein CspD [Vibrio metschnikovii CIP 69.14] gi|260611777|gb|EEX36980.1| cold shock protein CspD [Vibrio metschnikovii CIP 69.14] Length = 73 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG E D+F H S + G L GQ V Y+ Q Sbjct: 1 MATGTVKWFNNAKGFGFICPEGGNE---DIFAHYSTIKMDGYRTLKAGQQVAYEVEQG-P 56 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 57 KGYHASNVVPI 67 >gi|332560384|ref|ZP_08414706.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N] gi|332278096|gb|EGJ23411.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N] Length = 68 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G DVF+H +A+ AG+ L +GQ V++D + D Sbjct: 1 MANGTVKWFNATKGFGFIAPAG---GSKDVFIHVTALERAGIRQLDDGQAVSFDL-ERDR 56 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 57 NGRESATNLVL 67 >gi|320449142|ref|YP_004201238.1| cold shock protein, CSD family [Thermus scotoductus SA-01] gi|320149311|gb|ADW20689.1| cold shock protein, CSD family [Thermus scotoductus SA-01] Length = 68 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI E G DVF+H +A+ + G L EG V ++ Sbjct: 1 MKKGTVKWFNAEKGYGFIQQE----EGPDVFVHFTAIEAEGFRTLNEGDRVEFEVEAGRG 56 Query: 62 NGKYSAENLKLV 73 A+ ++ + Sbjct: 57 GKGPQAKKVRRL 68 >gi|310658174|ref|YP_003935895.1| major cold shock protein [Clostridium sticklandii DSM 519] gi|308824952|emb|CBH20990.1| major cold shock protein [Clostridium sticklandii] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI+ EG DVF+H SA+ S G +L EGQ V ++ V D Sbjct: 1 MKNGIVKWFNAEKGFGFISVEGE----KDVFVHFSAIQSEGYRSLEEGQEVQFEIVDGD- 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGPQAANVTRI 66 >gi|254293790|ref|YP_003059813.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] gi|254042321|gb|ACT59116.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] Length = 69 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K+YN KG+GFI P+ G+DVF+H +A+ AG+ L+EGQ V++D Q+ Sbjct: 1 METGTVKFYNDTKGFGFIAPD---NGGNDVFVHATALERAGMNGLSEGQKVSFDTAQDKR 57 Query: 62 NGKYSAENLK 71 +GK + +N++ Sbjct: 58 SGKMAVDNIQ 67 >gi|145294439|ref|YP_001137260.1| hypothetical protein cgR_0394 [Corynebacterium glutamicum R] gi|140844359|dbj|BAF53358.1| hypothetical protein [Corynebacterium glutamicum R] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP+KG+GFI P ++ DVF+H S + G L E QLV ++ + Sbjct: 1 MAQGTVKWFNPEKGFGFIAP---SDGSADVFVHYSEIQGNGFRTLEENQLVEFEIGEGAK 57 Query: 62 NGKYSAE 68 + A Sbjct: 58 GLQAQAV 64 >gi|91792287|ref|YP_561938.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217] gi|91714289|gb|ABE54215.1| cold-shock DNA-binding protein family [Shewanella denitrificans OS217] Length = 70 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ G DVF+H ++ S G L EGQ V+++ Q G Sbjct: 6 TGLVKWFNEDKGFGFITPD---NGGADVFVHFRSITSEGFKTLAEGQKVSFEVEQGQ-KG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PQAANV 67 >gi|26989186|ref|NP_744611.1| cold shock protein CspA [Pseudomonas putida KT2440] gi|148548435|ref|YP_001268537.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida F1] gi|325276815|ref|ZP_08142516.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] gi|24984025|gb|AAN68075.1|AE016439_10 cold shock protein CspA [Pseudomonas putida KT2440] gi|63034352|gb|AAY28469.1| cold shock protein A-2 [Pseudomonas putida] gi|148512493|gb|ABQ79353.1| cold-shock DNA-binding protein family [Pseudomonas putida F1] gi|313499448|gb|ADR60814.1| Cold shock protein capa, fragment-related protein [Pseudomonas putida BIRD-1] gi|324098053|gb|EGB96198.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] Length = 70 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G++KW+N +KGYGFITP G GDD+F+H A+ S G +L EGQ V++ + Sbjct: 4 RQQGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAERGQ 59 Query: 62 NGKYSAEN 69 G +A+ Sbjct: 60 KGMQAAQV 67 >gi|148975746|ref|ZP_01812577.1| putative Cold shock-like protein [Vibrionales bacterium SWAT-3] gi|145964819|gb|EDK30071.1| putative Cold shock-like protein [Vibrionales bacterium SWAT-3] Length = 70 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + G++KW+N +KG+GFI+ + G DVF+H A+ S G L EGQ V+++ V+N Sbjct: 5 NTGTVKWFNEEKGFGFISQD---NGGADVFVHFRAIVSEGFKTLKEGQKVSFE-VENGQK 60 Query: 63 GKYSAENL 70 G +A + Sbjct: 61 GLQAANVV 68 >gi|127512097|ref|YP_001093294.1| cold-shock DNA-binding domain-containing protein [Shewanella loihica PV-4] gi|126637392|gb|ABO23035.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4] Length = 69 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFI G DVF+H A+ S G L EGQ VT+D Q G Sbjct: 5 TGTVKWFNEDKGFGFIEQ---ANGGADVFVHFRAIVSDGYKTLAEGQKVTFDIEQGQ-KG 60 Query: 64 KYSAENL 70 +A + Sbjct: 61 LQAANVV 67 >gi|327440660|dbj|BAK17025.1| cold shock protein [Solibacillus silvestris StLB046] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H+G++KW++ +KGYGFI + G+DVF+H + + G +L EGQ+V +D V + Sbjct: 1 MHQGTVKWFDNEKGYGFIE----SADGEDVFVHFTGIQEEGFRSLDEGQVVEFDLV-DGI 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 RGPQAANVIK 65 >gi|294499936|ref|YP_003563636.1| cold shock protein [Bacillus megaterium QM B1551] gi|295705319|ref|YP_003598394.1| cold shock protein [Bacillus megaterium DSM 319] gi|294349873|gb|ADE70202.1| cold shock protein [Bacillus megaterium QM B1551] gi|294802978|gb|ADF40044.1| cold shock protein [Bacillus megaterium DSM 319] Length = 65 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ VT++ V+ + Sbjct: 1 MLQGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQEVTFEIVEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|257868635|ref|ZP_05648288.1| DNA-binding cold-shock protein [Enterococcus gallinarum EG2] gi|257802799|gb|EEV31621.1| DNA-binding cold-shock protein [Enterococcus gallinarum EG2] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ VT+D V+ Sbjct: 1 MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQGDGFKTLDEGQAVTFD-VEEGQ 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGLQATNIVK 65 >gi|295839487|ref|ZP_06826420.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|302518459|ref|ZP_07270801.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] gi|318062555|ref|ZP_07981276.1| cold shock protein [Streptomyces sp. SA3_actG] gi|318078420|ref|ZP_07985752.1| cold shock protein [Streptomyces sp. SA3_actF] gi|295827504|gb|EFG65433.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|302427354|gb|EFK99169.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] Length = 68 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +AS+G L EGQ V +D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIASSGFRELIEGQKVEFDVTQGQK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--LQAENIT 65 >gi|229178110|ref|ZP_04305481.1| Cold shock-like protein cspB [Bacillus cereus 172560W] gi|228605240|gb|EEK62690.1| Cold shock-like protein cspB [Bacillus cereus 172560W] Length = 65 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E DDVF+H SA+ G L +GQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGDGYKALEDGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A +KL Sbjct: 57 PQAANVVKL 65 >gi|261343363|ref|ZP_05971008.1| cold shock domain protein CspD [Providencia rustigianii DSM 4541] gi|282568501|gb|EFB74036.1| cold shock domain protein CspD [Providencia rustigianii DSM 4541] Length = 79 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P ++ G+D+F H S + G L GQ V + + Sbjct: 1 MDTGTVKWFNNAKGFGFICP---SDGGEDIFAHYSCIQMEGYRTLKAGQKVNFSVIIG-P 56 Query: 62 NGKYSAENLKLVP 74 G ++ + +V Sbjct: 57 KGNHANVIIPVVE 69 >gi|126733686|ref|ZP_01749433.1| cold shock protein CspA-related protein, putative [Roseobacter sp. CCS2] gi|126716552|gb|EBA13416.1| cold shock protein CspA-related protein, putative [Roseobacter sp. CCS2] Length = 69 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+G DVF+H SAV +GL L + Q V +D + Sbjct: 1 MASGTVKWFNTTKGFGFIAPDG---GSKDVFVHISAVERSGLTGLKDDQKVNFDI-EAGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESAVNLTL 67 >gi|115358650|ref|YP_775788.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria AMMD] gi|170699551|ref|ZP_02890592.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171317033|ref|ZP_02906238.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|172063386|ref|YP_001811037.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria MC40-6] gi|115283938|gb|ABI89454.1| cold-shock DNA-binding protein family [Burkholderia ambifaria AMMD] gi|170135569|gb|EDT03856.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171097817|gb|EDT42639.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|171995903|gb|ACB66821.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MC40-6] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ GDD+F H S + G L EGQ V+Y+ + Sbjct: 1 MDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSYEVKRGPK 57 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 58 G--LQASNIT 65 >gi|257880622|ref|ZP_05660275.1| cold shock protein CspC [Enterococcus faecium 1,230,933] gi|257883616|ref|ZP_05663269.1| cold shock protein CspC [Enterococcus faecium 1,231,502] gi|261209714|ref|ZP_05924033.1| cold shock protein CspC [Enterococcus faecium TC 6] gi|289567769|ref|ZP_06448041.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF] gi|293556143|ref|ZP_06674737.1| cold-shock protein [Enterococcus faecium E1039] gi|293556264|ref|ZP_06674851.1| cold-shock protein [Enterococcus faecium E1039] gi|293568900|ref|ZP_06680213.1| cold-shock protein [Enterococcus faecium E1071] gi|293572638|ref|ZP_06683609.1| cold-shock protein [Enterococcus faecium E980] gi|294615448|ref|ZP_06695318.1| cold-shock protein [Enterococcus faecium E1636] gi|294615452|ref|ZP_06695321.1| cold-shock protein [Enterococcus faecium E1636] gi|294623464|ref|ZP_06702315.1| cold shock protein [Enterococcus faecium U0317] gi|257814850|gb|EEV43608.1| cold shock protein CspC [Enterococcus faecium 1,230,933] gi|257819274|gb|EEV46602.1| cold shock protein CspC [Enterococcus faecium 1,231,502] gi|260076316|gb|EEW64124.1| cold shock protein CspC [Enterococcus faecium TC 6] gi|289160436|gb|EFD08464.1| cold shock-like protein cspLA [Enterococcus faecium D344SRF] gi|291588333|gb|EFF20168.1| cold-shock protein [Enterococcus faecium E1071] gi|291591688|gb|EFF23328.1| cold-shock protein [Enterococcus faecium E1636] gi|291591694|gb|EFF23333.1| cold-shock protein [Enterococcus faecium E1636] gi|291597125|gb|EFF28325.1| cold shock protein [Enterococcus faecium U0317] gi|291601573|gb|EFF31838.1| cold-shock protein [Enterococcus faecium E1039] gi|291601684|gb|EFF31942.1| cold-shock protein [Enterococcus faecium E1039] gi|291607335|gb|EFF36686.1| cold-shock protein [Enterococcus faecium E980] Length = 65 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFIT E G+DVF H SA+ G +L EGQ VTYD + Sbjct: 1 MNNGTVKWFNSDKGFGFIT----GEDGNDVFAHFSAIQGEGFKSLDEGQAVTYDIEEGQ- 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGPQAVNIVK 65 >gi|268590196|ref|ZP_06124417.1| cold shock domain protein CspD [Providencia rettgeri DSM 1131] gi|291314477|gb|EFE54930.1| cold shock domain protein CspD [Providencia rettgeri DSM 1131] Length = 81 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P + G+D+F H S + G L GQ V + Sbjct: 1 METGIVKWFNNAKGFGFICP---ADGGEDIFAHYSCIQMDGYRTLKAGQKVQFSVTIGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|125560025|gb|EAZ05473.1| hypothetical protein OsI_27689 [Oryza sativa Indica Group] Length = 193 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KG+GFITP+ + G+D+F+H+S++ S G +L +G +V + + +G Sbjct: 7 KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVG-SGNDG 62 Query: 64 KYSAENLK 71 + A ++ Sbjct: 63 RTKAVDVT 70 >gi|238782952|ref|ZP_04626980.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970] gi|238716155|gb|EEQ08139.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970] Length = 70 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLEEGQNVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVVAL 70 >gi|239618424|ref|YP_002941746.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF 19.5.1] gi|239507255|gb|ACR80742.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF 19.5.1] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFIT + G DVF+H SA+ G L EGQ V ++ + Sbjct: 2 TGTVKWFNSSKGYGFITKD----EGGDVFVHFSAIEVDGFKTLDEGQRVEFEIGEGPKG- 56 Query: 64 KYSAENLKLV 73 A N+K + Sbjct: 57 -PQAINVKPI 65 >gi|239827200|ref|YP_002949824.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70] gi|239807493|gb|ACS24558.1| cold-shock DNA-binding domain protein [Geobacillus sp. WCH70] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G +KW+N +KGYGFI + G+DVF+H +A+ G L EGQ V +D + + Sbjct: 1 MNKGKVKWFNAEKGYGFIE----MDGGNDVFVHFTAIQGEGFKTLEEGQTVMFDII-DGN 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|148557537|ref|YP_001265119.1| cold-shock DNA-binding protein family protein [Sphingomonas wittichii RW1] gi|148502727|gb|ABQ70981.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1] Length = 68 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKGYGFI PE E GDD F+H SAV AG+ L + Q ++Y+ V+ D Sbjct: 1 MPIGTVKFFNADKGYGFIAPE---EGGDDSFVHISAVERAGMATLNKDQRISYE-VETDR 56 Query: 62 NGKYSAENLKLV 73 GK SA NL+ V Sbjct: 57 RGKSSAVNLQAV 68 >gi|325263633|ref|ZP_08130367.1| conserved domain protein [Clostridium sp. D5] gi|324031342|gb|EGB92623.1| conserved domain protein [Clostridium sp. D5] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KG+GFIT + G+DVF+H S +A G L +GQ VT+D Q + Sbjct: 1 MNNGTVKWFNAQKGFGFIT---NAADGEDVFVHFSGLAMDGFKTLEDGQNVTFDITQGNR 57 Query: 62 NGKYSAENL 70 A N+ Sbjct: 58 G--LQAVNV 64 >gi|320323059|gb|EFW79148.1| cold-shock protein [Pseudomonas syringae pv. glycinea str. B076] Length = 120 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 53 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 107 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 108 LQAEDVIAALPR 119 >gi|254420854|ref|ZP_05034578.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp. BAL3] gi|196187031|gb|EDX82007.1| 'Cold-shock' DNA-binding domain, putative [Brevundimonas sp. BAL3] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP KGYGFI P+ G DVF+H +AV AGL L E V Y+ + Sbjct: 1 MATGTVKWFNPTKGYGFIQPDS---GGSDVFVHVTAVQKAGLQGLDENAKVEYEL--ENQ 55 Query: 62 NGKYSAENLKLV 73 GK SA +LKL+ Sbjct: 56 RGKTSAIDLKLL 67 >gi|163816662|ref|ZP_02208025.1| hypothetical protein COPEUT_02852 [Coprococcus eutactus ATCC 27759] gi|158447919|gb|EDP24914.1| hypothetical protein COPEUT_02852 [Coprococcus eutactus ATCC 27759] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI E G DVF+H SA+ G L EG V Y+ V + Sbjct: 1 MKTGKVKWFNAKKGYGFIC----DEDGTDVFVHFSALNMEGFKALEEGDTVEYEVV-DGE 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 KGPQAANVTKL 66 >gi|149242121|pdb|2I5M|X Chain X, Crystal Structure Of Bacillus Subtilis Cold Shock Protein Cspb Variant A46k S48r Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V ++ V+ + Sbjct: 1 MLEGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQKVRFEIVEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVTK 65 >gi|46206172|ref|ZP_00047626.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 69 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE + DVF+H SAV AGL LTEGQ V+Y + Sbjct: 1 MDTGTVKWFNEQKGYGFIQPE---DGSKDVFVHISAVERAGLRGLTEGQKVSYVMETDRR 57 Query: 62 NGKYSAENLKL 72 +GK S L++ Sbjct: 58 SGKQSGGKLQV 68 >gi|229076838|ref|ZP_04209743.1| Cold shock protein 2 [Bacillus cereus Rock4-18] gi|228706282|gb|EEL58550.1| Cold shock protein 2 [Bacillus cereus Rock4-18] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N DKG+GFI G DVF+H SA+ G +L EGQ VT++ Q Sbjct: 1 MEQGKVKWFNADKGFGFIE----RADGADVFVHFSAIQIDGYKSLDEGQSVTFEVEQGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--LQATNVQ 64 >gi|118616248|ref|YP_904580.1| cold shock protein a, CspA [Mycobacterium ulcerans Agy99] gi|118568358|gb|ABL03109.1| cold shock protein a, CspA [Mycobacterium ulcerans Agy99] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFITP+ + D+F+H S + +G +L E Q V ++ Q Sbjct: 1 MAQGTVKWFNGEKGFGFITPD---DGTKDLFVHYSEIQCSGYRSLEENQRVQFEVEQGTK 57 Query: 62 NGKYSAENLKLV 73 A + V Sbjct: 58 G--PQAVGVSAV 67 >gi|229505263|ref|ZP_04394773.1| cold shock protein CspD [Vibrio cholerae BX 330286] gi|229511067|ref|ZP_04400546.1| cold shock protein CspD [Vibrio cholerae B33] gi|229515525|ref|ZP_04404984.1| cold shock protein CspD [Vibrio cholerae TMA 21] gi|229518187|ref|ZP_04407631.1| cold shock protein CspD [Vibrio cholerae RC9] gi|229520428|ref|ZP_04409853.1| cold shock protein CspD [Vibrio cholerae TM 11079-80] gi|229525753|ref|ZP_04415158.1| cold shock protein CspD [Vibrio cholerae bv. albensis VL426] gi|229529769|ref|ZP_04419159.1| cold shock protein CspD [Vibrio cholerae 12129(1)] gi|229608282|ref|YP_002878930.1| cold shock protein CspD [Vibrio cholerae MJ-1236] gi|255745554|ref|ZP_05419502.1| cold shock protein CspD [Vibrio cholera CIRS 101] gi|262158372|ref|ZP_06029488.1| cold shock protein CspD [Vibrio cholerae INDRE 91/1] gi|262170184|ref|ZP_06037872.1| cold shock protein CspD [Vibrio cholerae RC27] gi|229333543|gb|EEN99029.1| cold shock protein CspD [Vibrio cholerae 12129(1)] gi|229339334|gb|EEO04351.1| cold shock protein CspD [Vibrio cholerae bv. albensis VL426] gi|229342526|gb|EEO07519.1| cold shock protein CspD [Vibrio cholerae TM 11079-80] gi|229344902|gb|EEO09876.1| cold shock protein CspD [Vibrio cholerae RC9] gi|229347294|gb|EEO12254.1| cold shock protein CspD [Vibrio cholerae TMA 21] gi|229351032|gb|EEO15973.1| cold shock protein CspD [Vibrio cholerae B33] gi|229357486|gb|EEO22403.1| cold shock protein CspD [Vibrio cholerae BX 330286] gi|229370937|gb|ACQ61360.1| cold shock protein CspD [Vibrio cholerae MJ-1236] gi|255736629|gb|EET92026.1| cold shock protein CspD [Vibrio cholera CIRS 101] gi|262021353|gb|EEY40066.1| cold shock protein CspD [Vibrio cholerae RC27] gi|262029813|gb|EEY48461.1| cold shock protein CspD [Vibrio cholerae INDRE 91/1] gi|327483846|gb|AEA78253.1| Cold shock protein CspD [Vibrio cholerae LMA3894-4] Length = 73 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG D+F H S + G L GQ V+Y Q Sbjct: 1 MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMDGYRTLKAGQQVSYQVEQG-P 56 Query: 62 NGKYSAENLKLVPKSSN 78 G +++ + + +S+ Sbjct: 57 KGYHASCVVPIEGQSAK 73 >gi|94984745|ref|YP_604109.1| cold-shock DNA-binding domain-containing protein [Deinococcus geothermalis DSM 11300] gi|94555026|gb|ABF44940.1| cold-shock DNA-binding domain protein [Deinococcus geothermalis DSM 11300] Length = 87 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI TE +DVF H SA+ + G L EG V ++ Sbjct: 1 MAVGKVKWFNAEKGYGFIE----TEGSEDVFAHFSAIQAQGFKKLNEGDEVEFEIEPGQR 56 Query: 62 NGKYSAENLKLVPKS 76 A N+ + + Sbjct: 57 GKGPQARNIVVTKAA 71 >gi|294498468|ref|YP_003562168.1| cold shock protein [Bacillus megaterium QM B1551] gi|295703813|ref|YP_003596888.1| cold shock protein [Bacillus megaterium DSM 319] gi|294348405|gb|ADE68734.1| cold shock protein [Bacillus megaterium QM B1551] gi|294801472|gb|ADF38538.1| cold shock protein [Bacillus megaterium DSM 319] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N DKG+GFI E G+DVF+H SA+ G +L EGQ VT+D Q Sbjct: 1 MEHGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQGEGFKSLDEGQEVTFDIEQGQR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--PQATNV 63 >gi|302382206|ref|YP_003818029.1| cold-shock DNA-binding domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192834|gb|ADL00406.1| cold-shock DNA-binding domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP KG+GFI P+ G DVF+H +AV AGL L E V Y+ Sbjct: 1 MATGTVKWFNPTKGFGFIQPDS---GGADVFVHITAVQKAGLTGLDENAKVEYEL--ESQ 55 Query: 62 NGKYSAENLKLV 73 GK SA +LK++ Sbjct: 56 RGKTSAIDLKVL 67 >gi|229100140|ref|ZP_04231042.1| hypothetical protein bcere0020_53410 [Bacillus cereus Rock3-29] gi|229106964|ref|ZP_04237064.1| hypothetical protein bcere0019_56300 [Bacillus cereus Rock3-28] gi|229176343|ref|ZP_04303799.1| hypothetical protein bcere0006_53830 [Bacillus cereus MM3] gi|228607130|gb|EEK64496.1| hypothetical protein bcere0006_53830 [Bacillus cereus MM3] gi|228676519|gb|EEL31265.1| hypothetical protein bcere0019_56300 [Bacillus cereus Rock3-28] gi|228683275|gb|EEL37251.1| hypothetical protein bcere0020_53410 [Bacillus cereus Rock3-29] Length = 66 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N DKG+GFI + G+DVF+H SA+ G +L EGQ VT++ Q Sbjct: 1 MEQGKVKWFNADKGFGFIE----RQGGEDVFVHFSAIQIDGYKSLDEGQSVTFEVEQGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--LQATNVQ 64 >gi|94971209|ref|YP_593257.1| cold-shock DNA-binding protein family protein [Candidatus Koribacter versatilis Ellin345] gi|94553259|gb|ABF43183.1| cold-shock DNA-binding protein family [Candidatus Koribacter versatilis Ellin345] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N KGYGFI +G+DVF+H SA+ G L EG+ V +D ++ Sbjct: 1 MREKGTVKWFNGAKGYGFIQ----RSTGEDVFVHFSAIQENGYRTLNEGETVEFDLLKG- 55 Query: 61 ANGKYSAENLK 71 G +A ++ Sbjct: 56 PKGFQAANVVR 66 >gi|330719414|ref|ZP_08314014.1| cold shock protein [Leuconostoc fallax KCTC 3537] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N +KGYGFIT E +G+DVF H SA+ G L EGQ V+++ V++ Sbjct: 1 MSEQGTVKWFNGEKGYGFITRE----NGEDVFAHFSAIQGDGFKTLEEGQSVSFE-VESS 55 Query: 61 ANGKYSAENLK 71 G + +K Sbjct: 56 DRGLQATNIVK 66 >gi|227502480|ref|ZP_03932529.1| cold shock protein [Corynebacterium accolens ATCC 49725] gi|306835053|ref|ZP_07468097.1| cold shock protein CspA [Corynebacterium accolens ATCC 49726] gi|227076849|gb|EEI14812.1| cold shock protein [Corynebacterium accolens ATCC 49725] gi|304569064|gb|EFM44585.1| cold shock protein CspA [Corynebacterium accolens ATCC 49726] Length = 67 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI E + G D+F+H S + +G L E Q V+++ Sbjct: 1 MTQGTVKWFNSEKGYGFIERE---DGGGDIFVHYSEIQGSGFRTLEENQKVSFEVGSGPK 57 Query: 62 NGKYSAENL 70 + A ++ Sbjct: 58 GDQAQAVSI 66 >gi|54308343|ref|YP_129363.1| putative cold shock-like protein CspD [Photobacterium profundum SS9] gi|46912771|emb|CAG19561.1| putative cold shock-like protein CspD [Photobacterium profundum SS9] Length = 73 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE E D+F H S + G L GQ V Y+ Q Sbjct: 1 MATGTVKWFNNAKGFGFICPE---EGEGDIFAHYSTIQMDGYRTLKAGQQVNYEI-QTGP 56 Query: 62 NGKYSAENLKL 72 G +++E + + Sbjct: 57 KGHHASEIVPV 67 >gi|54309148|ref|YP_130168.1| putative cold shock-like protein cspG [Photobacterium profundum SS9] gi|46913580|emb|CAG20366.1| Putative cold shock-like protein cspG [Photobacterium profundum SS9] Length = 82 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT + G DVF+H A+ G L EGQ V+Y+ Q Sbjct: 18 TGTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLAEGQKVSYETEQGPKG- 73 Query: 64 KYSAENLKLV 73 A N++ + Sbjct: 74 -LQAANVEAI 82 >gi|308186235|ref|YP_003930366.1| Cold shock-like protein cspD [Pantoea vagans C9-1] gi|308056745|gb|ADO08917.1| Cold shock-like protein cspD [Pantoea vagans C9-1] Length = 73 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D + Sbjct: 1 METGTVKWFNNSKGFGFICPVG---GGDDIFAHYSTIQMEGYRTLKAGQQVQFDVHEGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|15800910|ref|NP_286926.1| cold shock protein CspG [Escherichia coli O157:H7 EDL933] gi|25296143|pir||E85634 homolog of Salmonella cold shock protein [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12514257|gb|AAG55537.1|AE005293_1 homolog of Salmonella cold shock protein [Escherichia coli O157:H7 str. EDL933] Length = 70 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H +A+ S L E Q V + Q G Sbjct: 6 TGLVKWFNADKGFGFITPD---DGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQ-RG 61 Query: 64 KYSAENLK 71 +A + Sbjct: 62 PAAANVVT 69 >gi|90413211|ref|ZP_01221206.1| putative cold shock-like protein CspD [Photobacterium profundum 3TCK] gi|90325763|gb|EAS42221.1| putative cold shock-like protein CspD [Photobacterium profundum 3TCK] Length = 73 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE E D+F H S + G L GQ V Y+ Q Sbjct: 1 MATGTVKWFNNAKGFGFICPE---EGEGDIFAHYSTIQMDGYRTLKAGQQVNYEI-QTGP 56 Query: 62 NGKYSAENLKL 72 G +++E + + Sbjct: 57 KGHHASEIIPV 67 >gi|150377277|ref|YP_001313872.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150031824|gb|ABR63939.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] Length = 69 Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + DVF+H SAV AG+ ++ EGQ + ++ +++ Sbjct: 1 MTTGTVKWFNSTKGFGFIQPD---DGSADVFVHISAVERAGMNSIVEGQKLGFELERDNK 57 Query: 62 NGKYSAENLK 71 +GK SA L+ Sbjct: 58 SGKMSAGQLR 67 >gi|326383466|ref|ZP_08205153.1| cold shock protein [Gordonia neofelifaecis NRRL B-59395] gi|326197872|gb|EGD55059.1| cold shock protein [Gordonia neofelifaecis NRRL B-59395] Length = 67 Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+ + DVF+H S + G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAPD---DGDADVFVHYSEIQGNGFRTLEEDQRVEFEVGQGTK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|296141549|ref|YP_003648792.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola DSM 20162] gi|296029683|gb|ADG80453.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola DSM 20162] Length = 67 Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P + DDVF+H S + G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAP---ADGSDDVFVHYSEIQGNGFRTLEENQQVEFEVGQGTK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|291166639|gb|EFE28685.1| hypothetical protein HMPREF0389_00602 [Filifactor alocis ATCC 35896] Length = 66 Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI+ EG +DVF+H SA+ + G L EGQ V ++ V + A Sbjct: 1 MKQGKVKWFNAEKGFGFISVEGE----NDVFVHFSAIQTEGFKTLEEGQDVEFEIV-DGA 55 Query: 62 NGKYSAENLKL 72 G ++ KL Sbjct: 56 RGPQASNVTKL 66 >gi|116626278|ref|YP_828434.1| cold-shock DNA-binding protein family protein [Candidatus Solibacter usitatus Ellin6076] gi|116229440|gb|ABJ88149.1| cold-shock DNA-binding protein family [Candidatus Solibacter usitatus Ellin6076] Length = 67 Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N KGYGFI E +G+DVF+H SA+ + G L EG V ++ + Sbjct: 1 MKEKGTVKWFNAAKGYGFIQRE----NGEDVFVHFSAIQTEGYRTLDEGSSVEFEVTKGP 56 Query: 61 ANGKYSAENLK 71 A N+ Sbjct: 57 KG--LQATNVT 65 >gi|182434255|ref|YP_001821974.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|239946053|ref|ZP_04697990.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998] gi|239992524|ref|ZP_04713188.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379] gi|291449502|ref|ZP_06588892.1| cold shock protein scoF [Streptomyces roseosporus NRRL 15998] gi|326774768|ref|ZP_08234033.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|178462771|dbj|BAG17291.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|291352449|gb|EFE79353.1| cold shock protein scoF [Streptomyces roseosporus NRRL 15998] gi|326655101|gb|EGE39947.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 67 Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S + S G L EGQ VT+D Q Sbjct: 1 MASGTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNINSTGFRELQEGQAVTFDITQGQK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENIT 65 >gi|260769456|ref|ZP_05878389.1| cold shock protein CspE [Vibrio furnissii CIP 102972] gi|260614794|gb|EEX39980.1| cold shock protein CspE [Vibrio furnissii CIP 102972] gi|315181988|gb|ADT88901.1| cold shock DNA-binding domain-containing protein [Vibrio furnissii NCTC 11218] Length = 69 Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V + Q Sbjct: 6 TGTVKWFNETKGFGFI----KQENGPDVFAHFSAIQGDGFRTLAEGQKVEFVITQGQKG- 60 Query: 64 KYSAENLKLV 73 AE++KL+ Sbjct: 61 -PQAESIKLL 69 >gi|217076694|ref|YP_002334410.1| hypothetical protein THA_582 [Thermosipho africanus TCF52B] gi|217036547|gb|ACJ75069.1| conserved domain protein [Thermosipho africanus TCF52B] Length = 65 Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KGYGFIT E G+D+F+H SA+ + G L EGQ V +D VQ+ G Sbjct: 2 KGTVKWFDAKKGYGFIT----KEDGEDIFVHWSAIQTDGFKTLKEGQEVEFD-VQDGQKG 56 Query: 64 KYSAENLKLV 73 +A N+K + Sbjct: 57 PQAA-NVKPL 65 >gi|146309868|ref|YP_001174942.1| cold-shock DNA-binding protein family protein [Enterobacter sp. 638] gi|145316744|gb|ABP58891.1| cold-shock DNA-binding protein family [Enterobacter sp. 638] Length = 70 Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+NP+KG+GFITP + DVF+H SA+ S+ L EGQ V + +N A G Sbjct: 6 TGLVKWFNPEKGFGFITP---QDGSKDVFVHFSAIQSSDFKTLDEGQKVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVIAL 70 >gi|29827434|ref|NP_822068.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29604533|dbj|BAC68603.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 67 Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +AS+G L EGQ V +D Q Sbjct: 1 MASGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIASSGFRELQEGQKVNFDVTQGQK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENIT 65 >gi|21219062|ref|NP_624841.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|256789924|ref|ZP_05528355.1| cold shock protein [Streptomyces lividans TK24] gi|289773805|ref|ZP_06533183.1| cold shock protein scoF [Streptomyces lividans TK24] gi|1345847|sp|P48859|CSPF_STRCO RecName: Full=Cold shock protein ScoF gi|1067201|emb|CAA63367.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|6137029|emb|CAB59584.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|117164740|emb|CAJ88288.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|289704004|gb|EFD71433.1| cold shock protein scoF [Streptomyces lividans TK24] Length = 67 Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S + + G L EGQ VT+D Q Sbjct: 1 MASGTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNINAQGYRELQEGQAVTFDITQGQK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENIT 65 >gi|231915|sp|Q01761|CSP7_STRCL RecName: Full=Cold shock-like protein 7.0 gi|46789|emb|CAA48316.1| 7 kDa cold shock like protein [Streptomyces clavuligerus ATCC 27064] Length = 66 Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF+H SA+ + G +L E Q+V +D + Sbjct: 1 MATGTVKWFNAEKGFGFIAQDG---GGPDVFVHYSAINATGFRSLEENQVVNFDVTHGEG 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 ---PQAENVS 64 >gi|326204316|ref|ZP_08194175.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens DSM 2782] gi|325985591|gb|EGD46428.1| cold-shock DNA-binding domain protein [Clostridium papyrosolvens DSM 2782] Length = 66 Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI + G+DVF+H SA+ G L EG V +D V+ A Sbjct: 1 MEKGRVKWFNAEKGFGFIERD----GGNDVFVHFSAINMDGYKTLEEGSEVVFDVVEG-A 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 KGPQAANV 63 >gi|329298247|ref|ZP_08255583.1| cold shock-like protein CspD [Plautia stali symbiont] Length = 73 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G D+F H S + G L GQ V +D + Sbjct: 1 METGTVKWFNNTKGFGFICPIGGDN---DIFAHYSTIQMEGYRTLKAGQHVQFDVHEGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|332996322|gb|EGK15949.1| cold shock-like protein cspG [Shigella flexneri VA-6] Length = 70 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP+ + DVF+H SA+ + G +L EGQ V++ ++ A G Sbjct: 6 TGIVKWFNADKGFGFITPD---DGSKDVFVHFSAIQNYGYKSLDEGQKVSFTI-ESGAKG 61 Query: 64 KYSAENLK 71 +A N+ Sbjct: 62 P-AAGNVT 68 >gi|332685716|ref|YP_004455490.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311] gi|332369725|dbj|BAK20681.1| cold shock protein CspA [Melissococcus plutonius ATCC 35311] Length = 66 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI+ E G DVF+H SA+ G L E Q VT+D +++ Sbjct: 1 MEHGTVKWFNAEKGFGFISRE----DGSDVFVHFSAIQGDGFKTLEEDQPVTFDVEESER 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQAVNVQ 64 >gi|323499460|ref|ZP_08104431.1| cold shock-like protein CspD [Vibrio sinaloensis DSM 21326] gi|323315447|gb|EGA68487.1| cold shock-like protein CspD [Vibrio sinaloensis DSM 21326] Length = 73 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG DVF H S + G L GQ V ++ + Sbjct: 1 MATGTVKWFNNAKGFGFICPEGED---GDVFAHYSTIQMDGYRTLKAGQQVNFEVEEGPK 57 Query: 62 NGKYSAENLKLVPKS 76 Y A + V Sbjct: 58 G--YHASVVTPVESQ 70 >gi|85860691|ref|YP_462893.1| cold shock protein [Syntrophus aciditrophicus SB] gi|85723782|gb|ABC78725.1| cold shock protein [Syntrophus aciditrophicus SB] Length = 66 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + G DVF+H SA+ + G +L+EG V++D V Sbjct: 1 MPEGTVKWFNDSKGFGFIEQD----GGKDVFVHHSAIQAEGFKSLSEGDRVSFDVVVGKK 56 Query: 62 NGKYSAENLKLV 73 SAEN++ V Sbjct: 57 G--PSAENVRKV 66 >gi|119385862|ref|YP_916917.1| cold-shock DNA-binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119376457|gb|ABL71221.1| cold-shock DNA-binding protein family [Paracoccus denitrificans PD1222] Length = 68 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI PE DVF+H SA+ AG+ +L +GQ + YD + D Sbjct: 1 MANGTVKWFNSNKGFGFIAPET---GSKDVFIHISALERAGIHHLNDGQAIAYDI-ERDR 56 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 57 NGRESATNLVL 67 >gi|317129010|ref|YP_004095292.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] gi|315473958|gb|ADU30561.1| cold-shock DNA-binding domain protein [Bacillus cellulosilyticus DSM 2522] Length = 66 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V+++ Q Sbjct: 1 MEQGKVKWFNAEKGFGFIEVE----GGDDVFVHFSAINGEGFKTLEEGQDVSFEVEQGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--PQATNVNKL 66 >gi|134300911|ref|YP_001114407.1| cold-shock DNA-binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134053611|gb|ABO51582.1| cold-shock DNA-binding protein family [Desulfotomaculum reducens MI-1] Length = 65 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KGYGFI E G DVF+H SA+ G +L EGQ V +D V+ A G Sbjct: 3 GKVKWFNAEKGYGFIERE----EGGDVFVHFSAIQEEGFKSLAEGQEVEFDIVEG-ARGP 57 Query: 65 YSAENLK 71 +A K Sbjct: 58 QAANVTK 64 >gi|78065067|ref|YP_367836.1| cold-shock DNA-binding protein family protein [Burkholderia sp. 383] gi|107024146|ref|YP_622473.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia AU 1054] gi|115350462|ref|YP_772301.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria AMMD] gi|116688527|ref|YP_834150.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia HI2424] gi|134294597|ref|YP_001118332.1| cold-shock DNA-binding protein family protein [Burkholderia vietnamiensis G4] gi|170701451|ref|ZP_02892407.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|170731829|ref|YP_001763776.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|171319075|ref|ZP_02908199.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|172059495|ref|YP_001807147.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria MC40-6] gi|206558773|ref|YP_002229533.1| cold shock-like protein CspD [Burkholderia cenocepacia J2315] gi|254246471|ref|ZP_04939792.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184] gi|254253382|ref|ZP_04946700.1| Cold-shock protein [Burkholderia dolosa AUO158] gi|77965812|gb|ABB07192.1| cold-shock DNA-binding protein family [Burkholderia sp. 383] gi|105894335|gb|ABF77500.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia AU 1054] gi|115280450|gb|ABI85967.1| cold-shock DNA-binding protein family [Burkholderia ambifaria AMMD] gi|116646616|gb|ABK07257.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia HI2424] gi|124871247|gb|EAY62963.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184] gi|124895991|gb|EAY69871.1| Cold-shock protein [Burkholderia dolosa AUO158] gi|134137754|gb|ABO53497.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis G4] gi|169815071|gb|ACA89654.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia MC0-3] gi|170133648|gb|EDT02020.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171095714|gb|EDT40670.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|171992012|gb|ACB62931.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MC40-6] gi|198034810|emb|CAR50678.1| cold shock-like protein CspD [Burkholderia cenocepacia J2315] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITPEG GDD+F H S + G L E Q V ++ V+ Sbjct: 1 MATGTVKWFNDAKGFGFITPEG---GGDDLFAHFSEIRVEGFKTLQENQKVEFE-VKTGP 56 Query: 62 NGKYSAENLKLV 73 G +A N++ V Sbjct: 57 KGLQAA-NIRPV 67 >gi|228992244|ref|ZP_04152177.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] gi|228998299|ref|ZP_04157894.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|229005782|ref|ZP_04163480.1| Cold shock protein cspB [Bacillus mycoides Rock1-4] gi|228755458|gb|EEM04805.1| Cold shock protein cspB [Bacillus mycoides Rock1-4] gi|228761451|gb|EEM10402.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|228767497|gb|EEM16127.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] Length = 66 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN- 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGPQATNVVK 65 >gi|78062299|ref|YP_372207.1| cold-shock DNA-binding protein family protein [Burkholderia sp. 383] gi|107026255|ref|YP_623766.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia AU 1054] gi|116692558|ref|YP_838091.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia HI2424] gi|170738189|ref|YP_001779449.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|206563468|ref|YP_002234231.1| putative DNA-binding cold-shock protein [Burkholderia cenocepacia J2315] gi|77970184|gb|ABB11563.1| cold-shock DNA-binding protein family [Burkholderia sp. 383] gi|105895629|gb|ABF78793.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia AU 1054] gi|116650558|gb|ABK11198.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia HI2424] gi|169820377|gb|ACA94959.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia MC0-3] gi|198039508|emb|CAR55475.1| putative DNA-binding cold-shock protein [Burkholderia cenocepacia J2315] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ GDD+F H S + G L EGQ V+++ + Sbjct: 1 MDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSFEVKRGPK 57 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 58 G--LQASNIT 65 >gi|239997241|ref|ZP_04717765.1| putative cold shock-like protein cspG [Alteromonas macleodii ATCC 27126] gi|332142943|ref|YP_004428681.1| putative cold shock-like protein cspG [Alteromonas macleodii str. 'Deep ecotype'] gi|332143012|ref|YP_004428750.1| putative cold shock-like protein cspG [Alteromonas macleodii str. 'Deep ecotype'] gi|327552965|gb|AEA99683.1| putative cold shock-like protein cspG [Alteromonas macleodii str. 'Deep ecotype'] gi|327553034|gb|AEA99752.1| putative cold shock-like protein cspG [Alteromonas macleodii str. 'Deep ecotype'] Length = 69 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKGYGF+T + G DVF+H A+ S G L EGQ V ++ + Sbjct: 5 TGTVKWFNADKGYGFLTQD---NGGKDVFVHFRAIISDGYKTLPEGQRVEFEVEEGQKG- 60 Query: 64 KYSAENLKLV 73 A N++ + Sbjct: 61 -LQAANVQAI 69 >gi|312877876|ref|ZP_07737822.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311795339|gb|EFR11722.1| cold-shock DNA-binding domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 66 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+NP+KGYGFI S ++G+DVF+H SA+ G L EGQ+V +D V+ + Sbjct: 2 RGRVKWFNPEKGYGFI----SADNGEDVFVHFSAINMEGYKTLAEGQMVEFDIVKTERG- 56 Query: 64 KYSAENLKLVP 74 A N++ V Sbjct: 57 -NQAMNVRKVK 66 >gi|182437305|ref|YP_001825024.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777925|ref|ZP_08237190.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465821|dbj|BAG20341.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658258|gb|EGE43104.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ V +D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIAASGFRELQEGQKVNFDVTQGQK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENIT 65 >gi|157364579|ref|YP_001471346.1| cold-shock DNA-binding domain-containing protein [Thermotoga lettingae TMO] gi|157315183|gb|ABV34282.1| putative cold-shock DNA-binding domain protein [Thermotoga lettingae TMO] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW++ KGYGFIT E G+DVF+H SA+ + G L EGQ V ++ Q + Sbjct: 1 MFKGTVKWFDSKKGYGFIT----KEGGEDVFVHFSAIKTDGFKTLREGQEVEFEVQQGNK 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--PQAVNVTPI 66 >gi|169627591|ref|YP_001701240.1| cold shock protein A (CspA) [Mycobacterium abscessus ATCC 19977] gi|169239558|emb|CAM60586.1| Probable cold shock protein A (CspA) [Mycobacterium abscessus] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H + + G L E Q V ++ Q+ Sbjct: 1 MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGNGFRTLEENQKVEFEVGQSPK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|73539162|ref|YP_299529.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72122499|gb|AAZ64685.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 83 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW+N KG+GFI P+ GDD+F H S + S G +L E Q V+++ V+N Sbjct: 16 IMQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEIRSEGFKSLQENQRVSFE-VKNG 71 Query: 61 ANGKYSAE 68 G +A Sbjct: 72 PKGLQAAN 79 >gi|95929679|ref|ZP_01312421.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] gi|95134376|gb|EAT16033.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] Length = 66 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + GS+KW+N KG+GFI + +G DVF+H SA+ G +L EG V++D + Sbjct: 1 MAEGSVKWFNDSKGFGFIEQD----NGPDVFVHFSAIQGDGFKSLAEGDRVSFDVT-DGQ 55 Query: 62 NGKYSAENLKL 72 G SA ++ Sbjct: 56 KGPQSANVRRI 66 >gi|120402055|ref|YP_951884.1| cold-shock DNA-binding domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119954873|gb|ABM11878.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii PYR-1] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI P+G DVF+H S ++ G +L E Q V ++ Q + Sbjct: 1 MAQGTVKWFNGDKGFGFIAPDG---GAPDVFVHYSEISGNGYRSLEENQRVEFEVEQGNK 57 Query: 62 NGKYSAENLKLV 73 A + V Sbjct: 58 G--PQAVRVTAV 67 >gi|163939506|ref|YP_001644390.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229011015|ref|ZP_04168209.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048] gi|229058330|ref|ZP_04196715.1| Cold shock-like protein cspB [Bacillus cereus AH603] gi|229132514|ref|ZP_04261364.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196] gi|229166538|ref|ZP_04294291.1| Cold shock-like protein cspB [Bacillus cereus AH621] gi|163861703|gb|ABY42762.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] gi|228616942|gb|EEK74014.1| Cold shock-like protein cspB [Bacillus cereus AH621] gi|228650951|gb|EEL06936.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196] gi|228720004|gb|EEL71593.1| Cold shock-like protein cspB [Bacillus cereus AH603] gi|228750187|gb|EEM00019.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048] Length = 65 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E +DVF+H SA+ S G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIE----MEGSEDVFVHFSAIQSDGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A KL Sbjct: 57 PQAANVAKL 65 >gi|148546481|ref|YP_001266583.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida F1] gi|148510539|gb|ABQ77399.1| cold-shock DNA-binding protein family [Pseudomonas putida F1] Length = 197 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D Sbjct: 131 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 185 Query: 64 KYSAENLKLV 73 AE++ V Sbjct: 186 -LQAEDVVAV 194 >gi|260777147|ref|ZP_05886041.1| cold shock protein CspE [Vibrio coralliilyticus ATCC BAA-450] gi|260606813|gb|EEX33087.1| cold shock protein CspE [Vibrio coralliilyticus ATCC BAA-450] Length = 69 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H SA+ G L EGQ V + Q Sbjct: 6 TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAITGDGFRTLVEGQKVEFTVSQGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+KLV Sbjct: 61 -PQAENIKLV 69 >gi|269793598|ref|YP_003313053.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM 10542] gi|269095783|gb|ACZ20219.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM 10542] Length = 62 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +KG+GFI PE + DVF H SA+AS+G +L E Q V +D Q Sbjct: 1 MKWFNAEKGFGFIAPE---DGSADVFAHYSAIASSGYRSLDENQKVEFDVTQGPKG--PQ 55 Query: 67 AENLKLV 73 AEN++ + Sbjct: 56 AENIRPL 62 >gi|251789968|ref|YP_003004689.1| cold-shock DNA-binding domain-containing protein [Dickeya zeae Ech1591] gi|271500838|ref|YP_003333863.1| cold-shock DNA-binding domain-containing protein [Dickeya dadantii Ech586] gi|307130778|ref|YP_003882794.1| cold shock protein [Dickeya dadantii 3937] gi|247538589|gb|ACT07210.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591] gi|270344393|gb|ACZ77158.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586] gi|306528307|gb|ADM98237.1| cold shock protein [Dickeya dadantii 3937] Length = 73 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G+D+F H S + G L GQ+V + Q Sbjct: 1 METGTVKWFNNAKGFGFICPES---GGEDIFAHYSTIQMDGYRTLKAGQVVQFTVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|157375023|ref|YP_001473623.1| cold-shock DNA-binding domain-containing protein [Shewanella sediminis HAW-EB3] gi|170727046|ref|YP_001761072.1| cold-shock DNA-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|157317397|gb|ABV36495.1| cold-shock DNA-binding domain protein [Shewanella sediminis HAW-EB3] gi|169812393|gb|ACA86977.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC 51908] Length = 68 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G+DVF H S + G L GQ V ++ Sbjct: 1 MANGTVKWFNNAKGFGFICPEA---GGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEAGPK 57 Query: 62 NGKYSA 67 SA Sbjct: 58 GMHASA 63 >gi|226330749|ref|ZP_03806267.1| hypothetical protein PROPEN_04669 [Proteus penneri ATCC 35198] gi|225201544|gb|EEG83898.1| hypothetical protein PROPEN_04669 [Proteus penneri ATCC 35198] Length = 69 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITPE + G+D+F H S + G L GQ V Y ++ Sbjct: 1 METGTVKWFNNAKGFGFITPE---KGGEDIFAHYSTIRMEGYRTLKAGQKVNYSTIKGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|56707866|ref|YP_169762.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670337|ref|YP_666894.1| cold shock protein [Francisella tularensis subsp. tularensis FSC198] gi|115315074|ref|YP_763797.1| cold shock protein [Francisella tularensis subsp. holarctica OSU18] gi|134301709|ref|YP_001121677.1| cold shock DNA-binding domain-containing protein [Francisella tularensis subsp. tularensis WY96-3418] gi|187931528|ref|YP_001891512.1| cold shock protein, DNA-binding [Francisella tularensis subsp. mediasiatica FSC147] gi|224456944|ref|ZP_03665417.1| cold shock protein, DNA-binding [Francisella tularensis subsp. tularensis MA00-2987] gi|254369526|ref|ZP_04985537.1| hypothetical protein FTAG_01407 [Francisella tularensis subsp. holarctica FSC022] gi|254370361|ref|ZP_04986366.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874681|ref|ZP_05247391.1| cold shock protein [Francisella tularensis subsp. tularensis MA00-2987] gi|54113247|gb|AAV29257.1| NT02FT0936 [synthetic construct] gi|56604358|emb|CAG45384.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320670|emb|CAL08767.1| cold shock protein [Francisella tularensis subsp. tularensis FSC198] gi|115129973|gb|ABI83160.1| cold shock protein [Francisella tularensis subsp. holarctica OSU18] gi|134049486|gb|ABO46557.1| cold shock DNA-binding domain protein [Francisella tularensis subsp. tularensis WY96-3418] gi|151568604|gb|EDN34258.1| hypothetical protein FTBG_00121 [Francisella tularensis subsp. tularensis FSC033] gi|157122480|gb|EDO66615.1| hypothetical protein FTAG_01407 [Francisella tularensis subsp. holarctica FSC022] gi|187712437|gb|ACD30734.1| cold shock protein, DNA-binding [Francisella tularensis subsp. mediasiatica FSC147] gi|254840680|gb|EET19116.1| cold shock protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159046|gb|ADA78437.1| cold shock DNA-binding domain protein [Francisella tularensis subsp. tularensis NE061598] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFI P + G DVF+H SAV +AGL +L EG+ V+++ +N Sbjct: 1 MRQGTVKFFNTSKGFGFIEP---QDGGKDVFVHISAVENAGLSSLREGEKVSFEVEEN-- 55 Query: 62 NGKYSAENLK 71 GK +A N+K Sbjct: 56 RGKMAAVNIK 65 >gi|317493065|ref|ZP_07951489.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919187|gb|EFV40522.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 70 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP+ D+F+H SA+ S L EGQ V + V+N G Sbjct: 6 TGLVKWFDAGKGFGFITPD---NGSKDIFVHFSAIQSTAFKTLDEGQRVEF-TVENGQKG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PSAANVVAL 70 >gi|313497560|gb|ADR58926.1| Cold-shock DNA-binding domain-containing protein [Pseudomonas putida BIRD-1] Length = 197 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D Sbjct: 131 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 185 Query: 64 KYSAENLKLV 73 AE++ V Sbjct: 186 -LQAEDVVAV 194 >gi|29376512|ref|NP_815666.1| cold shock protein CspC [Enterococcus faecalis V583] gi|255972368|ref|ZP_05422954.1| cold-shock protein [Enterococcus faecalis T1] gi|256619465|ref|ZP_05476311.1| cold-shock protein [Enterococcus faecalis ATCC 4200] gi|256853505|ref|ZP_05558875.1| cold shock protein CspC [Enterococcus faecalis T8] gi|256959303|ref|ZP_05563474.1| cold-shock protein [Enterococcus faecalis DS5] gi|256964738|ref|ZP_05568909.1| cold-shock protein [Enterococcus faecalis HIP11704] gi|257079369|ref|ZP_05573730.1| cold-shock protein [Enterococcus faecalis JH1] gi|257087195|ref|ZP_05581556.1| cold-shock protein [Enterococcus faecalis D6] gi|257090271|ref|ZP_05584632.1| cold-shock protein [Enterococcus faecalis CH188] gi|257422222|ref|ZP_05599212.1| cold shock protein [Enterococcus faecalis X98] gi|300860380|ref|ZP_07106467.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11] gi|29343976|gb|AAO81736.1| cold shock protein CspC [Enterococcus faecalis V583] gi|255963386|gb|EET95862.1| cold-shock protein [Enterococcus faecalis T1] gi|256598992|gb|EEU18168.1| cold-shock protein [Enterococcus faecalis ATCC 4200] gi|256711964|gb|EEU27002.1| cold shock protein CspC [Enterococcus faecalis T8] gi|256949799|gb|EEU66431.1| cold-shock protein [Enterococcus faecalis DS5] gi|256955234|gb|EEU71866.1| cold-shock protein [Enterococcus faecalis HIP11704] gi|256987399|gb|EEU74701.1| cold-shock protein [Enterococcus faecalis JH1] gi|256995225|gb|EEU82527.1| cold-shock protein [Enterococcus faecalis D6] gi|256999083|gb|EEU85603.1| cold-shock protein [Enterococcus faecalis CH188] gi|257164046|gb|EEU94006.1| cold shock protein [Enterococcus faecalis X98] gi|300849419|gb|EFK77169.1| cold shock protein CspA [Enterococcus faecalis TUSoD Ef11] gi|323481125|gb|ADX80564.1| cold shock protein cspC [Enterococcus faecalis 62] gi|329568749|gb|EGG50549.1| major cold shock protein CspA [Enterococcus faecalis TX1467] Length = 66 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFIT E G+DVF H SA+ + G +L EGQ VT+D + Sbjct: 1 MNNGTVKWFNSDKGFGFIT----GEDGNDVFAHFSAIQADGFKSLEEGQAVTFDIEEGQR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--MQAVNI 63 >gi|148265690|ref|YP_001232396.1| cold-shock DNA-binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146399190|gb|ABQ27823.1| cold-shock DNA-binding protein family [Geobacter uraniireducens Rf4] Length = 66 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI E +G+DVF+H S++ G +L EGQ VT+D VQ A Sbjct: 1 MANGVVKWFNDSKGFGFIEQE----NGEDVFVHFSSIQGDGFKSLAEGQAVTFDIVQG-A 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 KGPQAANVYK 65 >gi|310659567|ref|YP_003937288.1| DNA-binding transcriptional repressor [Clostridium sticklandii DSM 519] gi|308826345|emb|CBH22383.1| DNA-binding transcriptional repressor [Clostridium sticklandii] Length = 65 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E GDDVF+H SA+ G L EGQ V ++ Q + G Sbjct: 3 GKVKWFNAEKGFGFIERE----DGDDVFVHFSAIQGDGFKTLEEGQTVEFEITQGN-RGP 57 Query: 65 YSAENLK 71 ++ ++ Sbjct: 58 QASNVVR 64 >gi|303242124|ref|ZP_07328614.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus CD2] gi|302590311|gb|EFL60069.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus CD2] Length = 66 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N +KG+GFI + G+DVF+H SA+ G L EG V ++ V+ A Sbjct: 1 MERGRVKWFNAEKGFGFIERD----GGNDVFVHFSAINMDGYKTLEEGTEVQFEVVEG-A 55 Query: 62 NGKYSAENLK 71 G ++ + Sbjct: 56 KGPQASNVTR 65 >gi|163751227|ref|ZP_02158455.1| stress response protein CspD [Shewanella benthica KT99] gi|294140596|ref|YP_003556574.1| stress response protein CspD [Shewanella violacea DSS12] gi|161328941|gb|EDQ00015.1| stress response protein CspD [Shewanella benthica KT99] gi|293327065|dbj|BAJ01796.1| stress response protein CspD [Shewanella violacea DSS12] Length = 68 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G+DVF H S + G L GQ V ++ V+ Sbjct: 1 MANGTVKWFNNAKGFGFICPDA---GGEDVFAHYSTIEMEGYRTLKAGQPVQFE-VEAGP 56 Query: 62 NGKYSAE 68 G +++ Sbjct: 57 KGMHASV 63 >gi|163800347|ref|ZP_02194248.1| cold shock DNA-binding domain protein [Vibrio sp. AND4] gi|159175790|gb|EDP60584.1| cold shock DNA-binding domain protein [Vibrio sp. AND4] Length = 69 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H SA+ G L EGQ V ++ Q Sbjct: 6 TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAIQGDGFKTLAEGQKVEFEVTQGQKG- 60 Query: 64 KYSAENLKLV 73 AE + ++ Sbjct: 61 -PQAEKITVL 69 >gi|149909599|ref|ZP_01898252.1| cold shock-like protein [Moritella sp. PE36] gi|149807303|gb|EDM67256.1| cold shock-like protein [Moritella sp. PE36] Length = 73 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE GDDVF H S + G L GQLV Y+ + Sbjct: 1 MATGTVKWFNNAKGFGFICPES---GGDDVFAHFSIIQMDGYRTLKAGQLVDYEIDEGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|118470416|ref|YP_884970.1| hypothetical protein MSMEG_0559 [Mycobacterium smegmatis str. MC2 155] gi|118171703|gb|ABK72599.1| conserved domain protein [Mycobacterium smegmatis str. MC2 155] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+G DVF+H S ++ +G +L E Q V ++ Q A Sbjct: 1 MAQGTVKWFNGEKGFGFIAPDG---GAPDVFVHYSEISGSGFRSLEENQRVEFEITQG-A 56 Query: 62 NGKYSAENLKL 72 G + + Sbjct: 57 KGPQAVGVTAV 67 >gi|86159596|ref|YP_466381.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776107|gb|ABC82944.1| cold-shock DNA-binding protein family [Anaeromyxobacter dehalogenans 2CP-C] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +G G+DVF H +A+ + G ++ EGQ V +D + Sbjct: 1 MATGTVKWFNDAKGFGFITQDG---GGEDVFCHHTAIQAEGFRSVAEGQKVEFDVAKGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--LQAANVRPL 67 >gi|160937355|ref|ZP_02084716.1| hypothetical protein CLOBOL_02246 [Clostridium bolteae ATCC BAA-613] gi|158439424|gb|EDP17174.1| hypothetical protein CLOBOL_02246 [Clostridium bolteae ATCC BAA-613] Length = 72 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGFIT E E+G D+F+H S +AS G +L EGQ VT+D + Sbjct: 6 MNKGTVKWFNSQKGYGFITNE---ENGMDIFVHFSGIASNGFKSLEEGQAVTFDITNSPR 62 Query: 62 NGKYSAENL 70 A N+ Sbjct: 63 G--LQAVNV 69 >gi|297160336|gb|ADI10048.1| cold shock protein [Streptomyces bingchenggensis BCW-1] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELHEGQKVSFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|296166503|ref|ZP_06848934.1| cold shock protein Csp [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898115|gb|EFG77690.1| cold shock protein Csp [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+G DVF+H S + G +L E Q V ++ Q A Sbjct: 1 MTQGTVKWFNSEKGFGFIAPDG---GAADVFVHYSEIQGNGYRSLEENQRVEFNVEQG-A 56 Query: 62 NGKYSAENLKL 72 G + + Sbjct: 57 KGPQAVGVTAV 67 >gi|118592774|ref|ZP_01550163.1| cold shock protein [Stappia aggregata IAM 12614] gi|118434544|gb|EAV41196.1| cold shock protein [Stappia aggregata IAM 12614] Length = 69 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G D F+H +AV AG+ + EGQ + YD ++ Sbjct: 1 MTTGTVKWFNSSKGFGFIQPD---NGGPDAFVHITAVERAGMHEIVEGQKIGYDMERDTK 57 Query: 62 NGKYSAENLK 71 +GK SA NL+ Sbjct: 58 SGKMSACNLQ 67 >gi|332526824|ref|ZP_08402924.1| cold-shock DNA-binding protein family protein [Rubrivivax benzoatilyticus JA2] gi|332111225|gb|EGJ11257.1| cold-shock DNA-binding protein family protein [Rubrivivax benzoatilyticus JA2] Length = 69 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KGYGFITP+ G D+F H + G L E Q V ++ Q Sbjct: 4 ETGTVKWFNESKGYGFITPDA---GGKDLFAHFKEIQGTGFKTLAENQRVEFEVTQGQKG 60 Query: 63 GKYS 66 + S Sbjct: 61 PQAS 64 >gi|159043321|ref|YP_001532115.1| cold-shock DNA-binding domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157911081|gb|ABV92514.1| cold-shock DNA-binding domain protein [Dinoroseobacter shibae DFL 12] Length = 69 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ E G DVF+H SAV AGL L + + Y+ + Sbjct: 1 MPTGTVKWFNTTKGYGFIAPD---EGGKDVFVHISAVERAGLTGLADNTKIEYEL-REGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA LK+V Sbjct: 57 DGRSSATELKVV 68 >gi|192289774|ref|YP_001990379.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] gi|192283523|gb|ACE99903.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] Length = 71 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +LTEGQ ++++ + Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57 Query: 61 ANGKYSAENLKLVP 74 A NL + P Sbjct: 58 KGKGPKAVNLVISP 71 >gi|238797907|ref|ZP_04641398.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969] gi|238718212|gb|EEQ10037.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969] Length = 66 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + +N A G Sbjct: 2 TGLVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLEEGQNVEFSI-ENGAKG 57 Query: 64 KYSAENLKL 72 +A + L Sbjct: 58 PAAANVVAL 66 >gi|330958172|gb|EGH58432.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. maculicola str. ES4326] Length = 101 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%) Query: 2 VHRGSIKWYNPDKGYGFIT-------PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW+N KGYGFI PE GDD+F+H S + G + GQ V + Sbjct: 1 MKEGKVKWFNNAKGYGFINAKVNGKNPEKDEYGGDDLFVHFSTIEMEGYKTIKAGQKVIF 60 Query: 55 DYVQNDANGKYSAENLKLVPKSSN 78 D ++ A N++ V Sbjct: 61 DIIEGPKG--QHAVNIRAVKDDQE 82 >gi|329895883|ref|ZP_08271211.1| Cold shock protein CspE [gamma proteobacterium IMCC3088] gi|328922101|gb|EGG29460.1| Cold shock protein CspE [gamma proteobacterium IMCC3088] Length = 68 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E G DVF+H SA+ G L +GQ V +D Sbjct: 5 TGTVKWFNETKGFGFIERE----GGPDVFVHFSAIKGDGFKTLADGQKVEFDVTDGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 60 -PQAENVVPL 68 >gi|269104191|ref|ZP_06156887.1| putative Cold shock-like protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268160831|gb|EEZ39328.1| putative Cold shock-like protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 69 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT + G DVF+H A+ G L EGQ VT+D Q G Sbjct: 5 TGTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVTFDIEQGQ-KG 60 Query: 64 KYSAEN 69 +A Sbjct: 61 PQAANV 66 >gi|107028274|ref|YP_625369.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia AU 1054] gi|116686267|ref|YP_839514.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia HI2424] gi|170734893|ref|YP_001774007.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|105897438|gb|ABF80396.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia AU 1054] gi|116651982|gb|ABK12621.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia HI2424] gi|169820931|gb|ACA95512.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia MC0-3] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ + GDD+F H S + + G L E Q V+++ Q Sbjct: 1 MDTGIVKWFNDSKGFGFITPD---KGGDDLFAHFSEIRADGFKTLAENQKVSFETKQGPK 57 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 58 G--LQAANIKPL 67 >gi|53720688|ref|YP_109674.1| cold shock-like protein CspD [Burkholderia pseudomallei K96243] gi|53723938|ref|YP_104309.1| cold-shock domain-contain protein [Burkholderia mallei ATCC 23344] gi|67641928|ref|ZP_00440693.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8 horse 4] gi|76811091|ref|YP_334974.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|83720047|ref|YP_443443.1| cold-shock domain-contain protein [Burkholderia thailandensis E264] gi|124383483|ref|YP_001027729.1| cold-shock domain-contain protein [Burkholderia mallei NCTC 10229] gi|126440312|ref|YP_001060602.1| CspE-related protein [Burkholderia pseudomallei 668] gi|126449743|ref|YP_001082701.1| cold-shock domain-contain protein [Burkholderia mallei NCTC 10247] gi|126452091|ref|YP_001067852.1| cold-shock domain-contain protein [Burkholderia pseudomallei 1106a] gi|134283275|ref|ZP_01769976.1| cold-shock domain family protein [Burkholderia pseudomallei 305] gi|167582495|ref|ZP_02375369.1| cold-shock domain family protein [Burkholderia thailandensis TXDOH] gi|167620585|ref|ZP_02389216.1| cold-shock domain family protein [Burkholderia thailandensis Bt4] gi|167721415|ref|ZP_02404651.1| cold-shock domain family protein [Burkholderia pseudomallei DM98] gi|167740382|ref|ZP_02413156.1| cold-shock domain family protein [Burkholderia pseudomallei 14] gi|167817600|ref|ZP_02449280.1| cold-shock domain family protein [Burkholderia pseudomallei 91] gi|167826001|ref|ZP_02457472.1| cold-shock domain family protein [Burkholderia pseudomallei 9] gi|167896076|ref|ZP_02483478.1| cold-shock domain family protein [Burkholderia pseudomallei 7894] gi|167904462|ref|ZP_02491667.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC 13177] gi|167912723|ref|ZP_02499814.1| cold-shock domain family protein [Burkholderia pseudomallei 112] gi|167920683|ref|ZP_02507774.1| cold-shock domain family protein [Burkholderia pseudomallei BCC215] gi|217424876|ref|ZP_03456373.1| cold-shock domain family protein [Burkholderia pseudomallei 576] gi|226198244|ref|ZP_03793815.1| cold-shock domain family protein [Burkholderia pseudomallei Pakistan 9] gi|237813987|ref|YP_002898438.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|242317385|ref|ZP_04816401.1| cold-shock domain family protein [Burkholderia pseudomallei 1106b] gi|254175079|ref|ZP_04881740.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399] gi|254180483|ref|ZP_04887081.1| cold-shock domain family protein [Burkholderia pseudomallei 1655] gi|254190465|ref|ZP_04896973.1| cold-shock domain family protein [Burkholderia pseudomallei Pasteur 52237] gi|254198469|ref|ZP_04904890.1| cold-shock domain family protein [Burkholderia pseudomallei S13] gi|254201381|ref|ZP_04907745.1| cold-shock domain family protein [Burkholderia mallei FMH] gi|254206723|ref|ZP_04913074.1| cold-shock domain family protein [Burkholderia mallei JHU] gi|254258676|ref|ZP_04949730.1| cold-shock domain family protein [Burkholderia pseudomallei 1710a] gi|254300718|ref|ZP_04968163.1| cold-shock domain family protein [Burkholderia pseudomallei 406e] gi|254357313|ref|ZP_04973587.1| cold-shock domain family protein [Burkholderia mallei 2002721280] gi|257137775|ref|ZP_05586037.1| cold-shock DNA-binding domain protein [Burkholderia thailandensis E264] gi|52211102|emb|CAH37090.1| cold shock-like protein CspD [Burkholderia pseudomallei K96243] gi|52427361|gb|AAU47954.1| cold-shock domain family protein [Burkholderia mallei ATCC 23344] gi|76580544|gb|ABA50019.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|83653872|gb|ABC37935.1| cold-shock domain family protein-related protein [Burkholderia thailandensis E264] gi|124291503|gb|ABN00772.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC 10229] gi|126219805|gb|ABN83311.1| CspE-like protein [Burkholderia pseudomallei 668] gi|126225733|gb|ABN89273.1| cold-shock domain family protein [Burkholderia pseudomallei 1106a] gi|126242613|gb|ABO05706.1| cold-shock DNA-binding domain protein [Burkholderia mallei NCTC 10247] gi|134245470|gb|EBA45563.1| cold-shock domain family protein [Burkholderia pseudomallei 305] gi|147747275|gb|EDK54351.1| cold-shock domain family protein [Burkholderia mallei FMH] gi|147752265|gb|EDK59331.1| cold-shock domain family protein [Burkholderia mallei JHU] gi|148026377|gb|EDK84462.1| cold-shock domain family protein [Burkholderia mallei 2002721280] gi|157810480|gb|EDO87650.1| cold-shock domain family protein [Burkholderia pseudomallei 406e] gi|157938141|gb|EDO93811.1| cold-shock domain family protein [Burkholderia pseudomallei Pasteur 52237] gi|160696124|gb|EDP86094.1| cold-shock domain family protein [Burkholderia mallei ATCC 10399] gi|169655209|gb|EDS87902.1| cold-shock domain family protein [Burkholderia pseudomallei S13] gi|184211022|gb|EDU08065.1| cold-shock domain family protein [Burkholderia pseudomallei 1655] gi|217392332|gb|EEC32357.1| cold-shock domain family protein [Burkholderia pseudomallei 576] gi|225929764|gb|EEH25780.1| cold-shock domain family protein [Burkholderia pseudomallei Pakistan 9] gi|237506828|gb|ACQ99146.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|238522943|gb|EEP86385.1| cold-shock DNA-binding domain protein [Burkholderia mallei GB8 horse 4] gi|242140624|gb|EES27026.1| cold-shock domain family protein [Burkholderia pseudomallei 1106b] gi|254217365|gb|EET06749.1| cold-shock domain family protein [Burkholderia pseudomallei 1710a] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITPEG G+D+F H S + G L E Q V ++ V+ Sbjct: 1 MATGTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRVDGFKTLQENQKVEFE-VKTGP 56 Query: 62 NGKYSAENLKLV 73 G +A N+K + Sbjct: 57 KGLQAA-NIKPL 67 >gi|304397050|ref|ZP_07378929.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|304355199|gb|EFM19567.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] Length = 74 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G G+D+F H S + G L GQ V +D + Sbjct: 1 METGTVKWFNNSKGFGFICPVG---GGEDIFAHYSTIQMEGYRTLKAGQQVQFDVHEG-P 56 Query: 62 NGKYSAENLKLVPKSS 77 G +++ + +V + Sbjct: 57 KGNHASLIVPVVEVQA 72 >gi|89075956|ref|ZP_01162328.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|89048305|gb|EAR53884.1| putative Cold shock-like protein [Photobacterium sp. SKA34] Length = 70 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 6 TGLVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + + Sbjct: 62 LQAANVVAI 70 >gi|224063128|ref|XP_002301004.1| predicted protein [Populus trichocarpa] gi|222842730|gb|EEE80277.1| predicted protein [Populus trichocarpa] Length = 184 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 3/67 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW++ KG+GFI P+ + G+D+F+H++++ S G L++GQ V + + Sbjct: 8 TGTVKWFSAQKGFGFIAPD---DGGEDLFVHQTSIQSDGFRTLSDGQPVEFSVGSGEDGR 64 Query: 64 KYSAENL 70 +A+ + Sbjct: 65 AKAADVV 71 >gi|300703253|ref|YP_003744855.1| cold shock-like protein cspd (csp-d) [Ralstonia solanacearum CFBP2957] gi|299070916|emb|CBJ42220.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum CFBP2957] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V ++ Q Sbjct: 1 MASGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMNGFKTLKEGQRVVFEVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQATNIQ 65 >gi|186475442|ref|YP_001856912.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184191901|gb|ACC69866.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFIT + G+D+F H S + + G +L E Q V++D V+ Sbjct: 1 METGIVKWFNDAKGYGFITSDT---GGEDLFAHFSEIRADGFKSLKENQRVSFD-VKAGP 56 Query: 62 NGKYSAENLKLV 73 G+ +A N++ + Sbjct: 57 KGRQAA-NIQPL 67 >gi|70727397|ref|YP_254313.1| cold-shock protein C [Staphylococcus haemolyticus JCSC1435] gi|68448123|dbj|BAE05707.1| cold-shock protein C [Staphylococcus haemolyticus JCSC1435] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E G DVF+H S +A G L EGQ V +D + Sbjct: 1 MNNGTVKWFNAEKGFGFIERE----DGSDVFVHFSGIAGEGYKTLEEGQKVDFDITEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 57 G--EQATNVVVL 66 >gi|313497351|gb|ADR58717.1| Cold-shock domain-containing protein [Pseudomonas putida BIRD-1] Length = 69 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT++ VQ Sbjct: 4 RQKGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQQVTFEAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++ V Sbjct: 60 G--MQADKVQPV 69 >gi|254447090|ref|ZP_05060557.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium HTCC5015] gi|198263229|gb|EDY87507.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium HTCC5015] Length = 68 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KG+GFI P TE GDD+F+H SA+ G L EG VT++ V+ Sbjct: 1 MATAGTVKWFNNAKGFGFIVP---TEGGDDIFVHYSAIIGDGFKTLVEGDSVTFE-VEEG 56 Query: 61 ANGKYSAENLK 71 GK + +K Sbjct: 57 PKGKLAQNVVK 67 >gi|157372097|ref|YP_001480086.1| cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] gi|157323861|gb|ABV42958.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] Length = 70 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP + DVF+H SA+ S+ L EGQ V + +N A G Sbjct: 6 TGLVKWFNADKGFGFITP---QDGSKDVFVHFSAIQSSDFKTLDEGQKVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVIAL 70 >gi|294141223|ref|YP_003557201.1| cold shock-like protein cspA [Shewanella violacea DSS12] gi|22256742|sp|Q9S1B7|CSPA_SHEVD RecName: Full=Cold shock-like protein CspA gi|5869504|dbj|BAA84217.1| CspA [Shewanella violacea] gi|293327692|dbj|BAJ02423.1| cold shock-like protein cspA [Shewanella violacea DSS12] Length = 70 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + G++KW+N DKG+GF+T + G DVF+H A+AS G L EGQ VT++ Q Sbjct: 5 NTGTVKWFNEDKGFGFLTQD---NGGADVFVHFRAIASEGFKTLDEGQKVTFEVEQG-PK 60 Query: 63 GKYSAENLKL 72 G ++ + L Sbjct: 61 GLQASNVIAL 70 >gi|330810451|ref|YP_004354913.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378559|gb|AEA69909.1| putative Transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 89 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KGYGFI G + +D+F H SA+ G L GQ VT+D +Q Sbjct: 7 NGKVKWFNNAKGYGFIIAAGRDD--EDLFAHYSAINMEGYKTLKAGQPVTFDVIQGPKG- 63 Query: 64 KYSAENLKLV 73 A N+++V Sbjct: 64 -LHAVNIRVV 72 >gi|300173985|ref|YP_003773151.1| cold shock protein [Leuconostoc gasicomitatum LMG 18811] gi|299888364|emb|CBL92332.1| Cold shock protein [Leuconostoc gasicomitatum LMG 18811] Length = 66 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGF+T E +G+DVF H SA+ G L EGQ V ++ +D Sbjct: 1 MEKGTVKWFNGEKGYGFVTRE----NGEDVFAHFSAIQGDGFKTLEEGQAVEFEVETSD- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGLQAANISKL 66 >gi|317053579|ref|YP_004118713.1| cold-shock DNA-binding domain-containing protein [Pantoea sp. At-9b] gi|316952684|gb|ADU72157.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b] Length = 70 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG GFITPE DVF+H SA+ +L EGQ V + ++N G Sbjct: 7 GTVKWFNAEKGLGFITPE---NGSKDVFVHFSAIQGNDYRSLDEGQRVEF-ILENGQKGP 62 Query: 65 YSAE 68 +A Sbjct: 63 AAAN 66 >gi|163749217|ref|ZP_02156467.1| putative Cold shock-like protein [Shewanella benthica KT99] gi|161331287|gb|EDQ02176.1| putative Cold shock-like protein [Shewanella benthica KT99] Length = 70 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H ++ S G L EGQ V+++ Q G Sbjct: 6 TGLVKWFNEEKGFGFITQD---NGGADVFVHFRSITSDGFKTLAEGQKVSFEVEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 LQAANVVAL 70 >gi|229085316|ref|ZP_04217558.1| Cold shock protein cspB [Bacillus cereus Rock3-44] gi|228698035|gb|EEL50778.1| Cold shock protein cspB [Bacillus cereus Rock3-44] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V+++ V++ Sbjct: 1 MTLTGKVKWFNSEKGFGFIEVE----DGNDVFVHFSAITGDGFKSLDEGQEVSFE-VEDG 55 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 56 NRGPQAKNVVKL 67 >gi|121631|sp|P27484|GRP2_NICSY RecName: Full=Glycine-rich protein 2 gi|19743|emb|CAA42622.1| nsGRP-2 [Nicotiana sylvestris] Length = 214 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KG+GFITP+ + G+D+F+H+S + S G +L EG+ V ++ V++ +G Sbjct: 10 KGTVKWFSDQKGFGFITPD---DGGEDLFVHQSGIRSEGFRSLAEGETVEFE-VESGGDG 65 Query: 64 KYSAENLK 71 + A ++ Sbjct: 66 RTKAVDVT 73 >gi|300716061|ref|YP_003740864.1| Cold-shock DNA-binding protein [Erwinia billingiae Eb661] gi|299061897|emb|CAX59013.1| Cold-shock DNA-binding protein [Erwinia billingiae Eb661] Length = 75 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G+D+F H S + G L GQ V +D + Sbjct: 1 METGTVKWFNNAKGFGFICP---VSGGEDIFAHYSTIKMDGYRTLKAGQQVQFDVHEGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|288817819|ref|YP_003432166.1| cold shock protein [Hydrogenobacter thermophilus TK-6] gi|288787218|dbj|BAI68965.1| cold shock protein [Hydrogenobacter thermophilus TK-6] gi|308751417|gb|ADO44900.1| cold-shock DNA-binding domain protein [Hydrogenobacter thermophilus TK-6] Length = 69 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW++ +KGYGFIT + ++ DVF+H SA+ G L +GQ V ++ ++ Sbjct: 1 MALKGTVKWFSKEKGYGFITRD---DNQGDVFVHFSAIQQRGFKTLEQGQRVEFEIEEDS 57 Query: 61 ANGKYSAENLKLV 73 + A+N++ + Sbjct: 58 KGPR--AKNVRPI 68 >gi|325003541|ref|ZP_08124653.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia sp. P1] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI + + G DVF+H SA+ + G L E Q V + Q Sbjct: 1 MPQGTVKWFNAEKGFGFIATD---DEGPDVFVHYSAIEANGFRTLEENQRVDFQSSQGKK 57 Query: 62 NGKYSAENLKLV 73 A+ ++++ Sbjct: 58 G--PQADTVRVI 67 >gi|300690669|ref|YP_003751664.1| cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum PSI07] gi|299077729|emb|CBJ50367.1| Cold shock-like protein CspD (CSP-D) [Ralstonia solanacearum PSI07] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ E G+++F H SA+ G L EGQ V ++ Q Sbjct: 1 MANGTVKWFNDAKGFGFISPD---EGGEELFAHFSAIQMGGFKTLKEGQRVVFEVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQATNIQ 65 >gi|30262422|ref|NP_844799.1| cold shock protein CspA [Bacillus anthracis str. Ames] gi|42781516|ref|NP_978763.1| cold shock protein CspA [Bacillus cereus ATCC 10987] gi|47527715|ref|YP_019064.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor'] gi|47570638|ref|ZP_00241249.1| cold-shock domain family protein-related protein [Bacillus cereus G9241] gi|49185266|ref|YP_028518.1| cold shock protein CspA [Bacillus anthracis str. Sterne] gi|49477693|ref|YP_036543.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143060|ref|YP_083768.1| cold shock protein [Bacillus cereus E33L] gi|118477820|ref|YP_894971.1| cold-shock DNA-binding protein family protein [Bacillus thuringiensis str. Al Hakam] gi|170687065|ref|ZP_02878284.1| cold shock protein CspA [Bacillus anthracis str. A0465] gi|177649670|ref|ZP_02932672.1| cold shock protein CspA [Bacillus anthracis str. A0174] gi|190565634|ref|ZP_03018554.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I] gi|196033810|ref|ZP_03101221.1| cold shock protein CspA [Bacillus cereus W] gi|196039884|ref|ZP_03107187.1| cold shock protein CspA [Bacillus cereus NVH0597-99] gi|196043556|ref|ZP_03110794.1| cold shock protein CspA [Bacillus cereus 03BB108] gi|206973608|ref|ZP_03234526.1| cold shock protein CspA [Bacillus cereus H3081.97] gi|217959917|ref|YP_002338473.1| cold shock protein CspA [Bacillus cereus AH187] gi|218903556|ref|YP_002451390.1| cold shock protein CspA [Bacillus cereus AH820] gi|222096006|ref|YP_002530063.1| cold shock protein [Bacillus cereus Q1] gi|225864386|ref|YP_002749764.1| cold shock protein CspA [Bacillus cereus 03BB102] gi|227814766|ref|YP_002814775.1| cold shock protein CspA [Bacillus anthracis str. CDC 684] gi|228915013|ref|ZP_04078615.1| Cold shock protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927471|ref|ZP_04090526.1| Cold shock protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933740|ref|ZP_04096587.1| Cold shock protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946025|ref|ZP_04108365.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228985510|ref|ZP_04145667.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229030123|ref|ZP_04186185.1| Cold shock protein cspB [Bacillus cereus AH1271] gi|229091398|ref|ZP_04222612.1| Cold shock protein cspB [Bacillus cereus Rock3-42] gi|229121965|ref|ZP_04251183.1| Cold shock protein cspB [Bacillus cereus 95/8201] gi|229139109|ref|ZP_04267686.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26] gi|229155998|ref|ZP_04284099.1| Cold shock protein cspB [Bacillus cereus ATCC 4342] gi|229184633|ref|ZP_04311834.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1] gi|229196632|ref|ZP_04323376.1| Cold shock protein cspB [Bacillus cereus m1293] gi|229602363|ref|YP_002866754.1| cold shock protein CspA [Bacillus anthracis str. A0248] gi|254684998|ref|ZP_05148858.1| cold shock protein CspA [Bacillus anthracis str. CNEVA-9066] gi|254722404|ref|ZP_05184192.1| cold shock protein CspA [Bacillus anthracis str. A1055] gi|254737445|ref|ZP_05195149.1| cold shock protein CspA [Bacillus anthracis str. Western North America USA6153] gi|254743370|ref|ZP_05201055.1| cold shock protein CspA [Bacillus anthracis str. Kruger B] gi|254751761|ref|ZP_05203798.1| cold shock protein CspA [Bacillus anthracis str. Vollum] gi|254760279|ref|ZP_05212303.1| cold shock protein CspA [Bacillus anthracis str. Australia 94] gi|301053941|ref|YP_003792152.1| cold shock protein [Bacillus anthracis CI] gi|49035526|sp|Q81QK2|CSPE_BACAN RecName: Full=Cold shock-like protein CspE gi|30257053|gb|AAP26285.1| cold shock protein CspA [Bacillus anthracis str. Ames] gi|42737439|gb|AAS41371.1| cold shock protein CspA [Bacillus cereus ATCC 10987] gi|47502863|gb|AAT31539.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor'] gi|47552693|gb|EAL11133.1| cold-shock domain family protein-related protein [Bacillus cereus G9241] gi|49179193|gb|AAT54569.1| cold shock protein CspA [Bacillus anthracis str. Sterne] gi|49329249|gb|AAT59895.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51976529|gb|AAU18079.1| cold shock protein [Bacillus cereus E33L] gi|118417045|gb|ABK85464.1| cold-shock DNA-binding protein family [Bacillus thuringiensis str. Al Hakam] gi|170669116|gb|EDT19860.1| cold shock protein CspA [Bacillus anthracis str. A0465] gi|172084744|gb|EDT69802.1| cold shock protein CspA [Bacillus anthracis str. A0174] gi|190563661|gb|EDV17626.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I] gi|195993490|gb|EDX57447.1| cold shock protein CspA [Bacillus cereus W] gi|196025865|gb|EDX64534.1| cold shock protein CspA [Bacillus cereus 03BB108] gi|196029143|gb|EDX67747.1| cold shock protein CspA [Bacillus cereus NVH0597-99] gi|206747764|gb|EDZ59153.1| cold shock protein CspA [Bacillus cereus H3081.97] gi|217064050|gb|ACJ78300.1| cold shock protein CspA [Bacillus cereus AH187] gi|218534973|gb|ACK87371.1| cold shock protein CspA [Bacillus cereus AH820] gi|221240064|gb|ACM12774.1| cold shock protein [Bacillus cereus Q1] gi|225787378|gb|ACO27595.1| cold shock protein CspA [Bacillus cereus 03BB102] gi|227007633|gb|ACP17376.1| cold shock protein CspA [Bacillus anthracis str. CDC 684] gi|228586988|gb|EEK45062.1| Cold shock protein cspB [Bacillus cereus m1293] gi|228598846|gb|EEK56465.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1] gi|228627605|gb|EEK84331.1| Cold shock protein cspB [Bacillus cereus ATCC 4342] gi|228644464|gb|EEL00719.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26] gi|228661493|gb|EEL17115.1| Cold shock protein cspB [Bacillus cereus 95/8201] gi|228691940|gb|EEL45683.1| Cold shock protein cspB [Bacillus cereus Rock3-42] gi|228731181|gb|EEL82101.1| Cold shock protein cspB [Bacillus cereus AH1271] gi|228774275|gb|EEM22684.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228813671|gb|EEM59952.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825973|gb|EEM71759.1| Cold shock protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832190|gb|EEM77772.1| Cold shock protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844631|gb|EEM89680.1| Cold shock protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266771|gb|ACQ48408.1| cold shock protein CspA [Bacillus anthracis str. A0248] gi|300376110|gb|ADK05014.1| cold shock protein [Bacillus cereus biovar anthracis str. CI] gi|324326434|gb|ADY21694.1| cold shock protein CspA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ V+++ V++ Sbjct: 1 MTLTGKVKWFNSEKGFGFIEVE----GGNDVFVHFSAITGDGFKSLDEGQEVSFE-VEDG 55 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 56 NRGPQAKNVVKL 67 >gi|258516119|ref|YP_003192341.1| cold-shock DNA-binding domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257779824|gb|ACV63718.1| cold-shock DNA-binding domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 65 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI E G D+F+H SA+ G L EGQ V ++ V+ + G Sbjct: 2 EGTVKWFNAEKGFGFIEQE----GGGDIFVHFSAIQGDGFKTLDEGQKVKFEVVEGN-RG 56 Query: 64 KYSAENLKL 72 +A ++ Sbjct: 57 PQAANVSRI 65 >gi|228919954|ref|ZP_04083308.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228938352|ref|ZP_04100963.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971230|ref|ZP_04131859.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977839|ref|ZP_04138221.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|228781857|gb|EEM30053.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|228788465|gb|EEM36415.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821298|gb|EEM67312.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228839667|gb|EEM84954.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|326938860|gb|AEA14756.1| cold shock protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G+DVF+H SA+ + G +L EGQ V+++ ++ Sbjct: 1 MAVTGQVKWFNNEKGFGFIE----VPGGNDVFVHFSAIETDGFKSLEEGQKVSFEI-EDG 55 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 56 NRGPQAKNVIKL 67 >gi|227551594|ref|ZP_03981643.1| cold shock protein CspC [Enterococcus faecium TX1330] gi|257884481|ref|ZP_05664134.1| cold shock protein CspC [Enterococcus faecium 1,231,501] gi|257895800|ref|ZP_05675453.1| cold shock protein CspC [Enterococcus faecium Com12] gi|257898422|ref|ZP_05678075.1| cold shock protein CspC [Enterococcus faecium Com15] gi|293377586|ref|ZP_06623775.1| cold-shock DNA-binding domain protein [Enterococcus faecium PC4.1] gi|293571778|ref|ZP_06682794.1| cold-shock protein [Enterococcus faecium E980] gi|227179271|gb|EEI60243.1| cold shock protein CspC [Enterococcus faecium TX1330] gi|257820319|gb|EEV47467.1| cold shock protein CspC [Enterococcus faecium 1,231,501] gi|257832365|gb|EEV58786.1| cold shock protein CspC [Enterococcus faecium Com12] gi|257836334|gb|EEV61408.1| cold shock protein CspC [Enterococcus faecium Com15] gi|291608032|gb|EFF37338.1| cold-shock protein [Enterococcus faecium E980] gi|292643586|gb|EFF61707.1| cold-shock DNA-binding domain protein [Enterococcus faecium PC4.1] Length = 65 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N DKG+GFIT E G+DVF H SA+ G +L EGQ VTYD + Sbjct: 1 MNKGTVKWFNSDKGFGFIT----GEDGNDVFAHFSAIQGEGFKSLDEGQAVTYDIEEGQR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--LQAVNI 63 >gi|251796131|ref|YP_003010862.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] gi|247543757|gb|ACT00776.1| cold-shock DNA-binding domain protein [Paenibacillus sp. JDR-2] Length = 65 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KGYGFI+ E +G+DVF+H S++ G L EGQ V ++ Q + G Sbjct: 2 KGTVKWFNAEKGYGFISVE----NGEDVFVHYSSIQGDGFKALEEGQSVEFEITQGN-RG 56 Query: 64 KYSAENLKL 72 ++ +KL Sbjct: 57 AQASNVIKL 65 >gi|39995688|ref|NP_951639.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA] gi|39982452|gb|AAR33912.1| cold-shock domain family protein [Geobacter sulfurreducens PCA] gi|298504699|gb|ADI83422.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens KN400] Length = 66 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KGYGFI E +G+DVF+H S++ G L EGQ VT+D VQ A Sbjct: 1 MAKGVVKWFNDSKGYGFIEQE----NGEDVFVHFSSIQGDGFKTLVEGQAVTFDVVQG-A 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 KGLQAANVMK 65 >gi|297624311|ref|YP_003705745.1| cold-shock DNA-binding domain-containing protein [Truepera radiovictrix DSM 17093] gi|297165491|gb|ADI15202.1| cold-shock DNA-binding domain protein [Truepera radiovictrix DSM 17093] Length = 79 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ +KG+GFI + + G DVF H SA+ +G +L EG V ++ Q Sbjct: 1 MATGRVKWFSNEKGFGFIEQD---DGGADVFCHFSAITGSGYRSLNEGDEVEFEVEQGQK 57 Query: 62 NGKYSAENLKL 72 A+N+ + Sbjct: 58 G--LQAKNVTV 66 >gi|289549550|ref|YP_003470454.1| Cold shock protein CspC [Staphylococcus lugdunensis HKU09-01] gi|289179082|gb|ADC86327.1| Cold shock protein CspC [Staphylococcus lugdunensis HKU09-01] Length = 66 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E G+DVF+H S +A G L EGQ V +D + Sbjct: 1 MNNGTVKWFNAEKGFGFIERE----DGNDVFVHFSGIAGEGYKTLEEGQKVEFDITEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 57 G--DQATNVVVM 66 >gi|297565415|ref|YP_003684387.1| cold-shock DNA-binding domain-containing protein [Meiothermus silvanus DSM 9946] gi|296849864|gb|ADH62879.1| cold-shock DNA-binding domain protein [Meiothermus silvanus DSM 9946] Length = 74 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI EG T DVF+H SA+ S G L EG +V +D Sbjct: 1 MAKGKVKWFNAEKGFGFIEREGDT----DVFVHYSAIQSKGFRTLNEGDVVEFDVEPGKN 56 Query: 62 NGKYSAENLKLVPKS 76 A N+ +V + Sbjct: 57 GKGPQAANVNVVEAA 71 >gi|108803141|ref|YP_643078.1| cold-shock DNA-binding protein family protein [Rubrobacter xylanophilus DSM 9941] gi|108764384|gb|ABG03266.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus DSM 9941] Length = 67 Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW++ +KGYGFI+P+ + +D+F+H + +A G L EG V+Y+ + Sbjct: 1 MAQGTVKWFSDEKGYGFISPD---DGSEDLFVHYTGIAGEGFKTLEEGARVSYEATRGRK 57 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 58 G--MQAENVSPL 67 >gi|315651983|ref|ZP_07904985.1| cold shock protein Csp [Eubacterium saburreum DSM 3986] gi|315485812|gb|EFU76192.1| cold shock protein Csp [Eubacterium saburreum DSM 3986] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++RG++KW+N KGYGFI S E G+DVF+H S + G L EG V YD + Sbjct: 1 MNRGTVKWFNNQKGYGFI----SDEGGNDVFVHFSDLNMDGFKTLDEGNSVEYDLTEGAK 56 Query: 62 NGKYSAENLKLV 73 A N+ +V Sbjct: 57 G--PQAVNVTVV 66 >gi|240145038|ref|ZP_04743639.1| cold shock protein B [Roseburia intestinalis L1-82] gi|257202861|gb|EEV01146.1| cold shock protein B [Roseburia intestinalis L1-82] gi|291535362|emb|CBL08474.1| cold-shock DNA-binding protein family [Roseburia intestinalis M50/1] gi|291538173|emb|CBL11284.1| cold-shock DNA-binding protein family [Roseburia intestinalis XB6B4] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFI S E G+DVF+H SA+ G L +G+ V ++ + + Sbjct: 1 MQQGTVKWFNAKKGYGFI----SDEQGNDVFVHFSALNMDGFKELKDGERVEFEVTEGE- 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGPQAANVSRI 66 >gi|303240450|ref|ZP_07326967.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus CD2] gi|302592015|gb|EFL61746.1| cold-shock DNA-binding domain protein [Acetivibrio cellulolyticus CD2] Length = 66 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E G+DVF+H SA+ + G L EGQ V ++ V+N Sbjct: 1 MLNGTVKWFNAGKGFGFIERE----DGEDVFVHFSAINADGYKTLNEGQKVQFE-VENGQ 55 Query: 62 NGKYSAENL 70 G + + Sbjct: 56 RGLQAKNVI 64 >gi|238019427|ref|ZP_04599853.1| hypothetical protein VEIDISOL_01296 [Veillonella dispar ATCC 17748] gi|313893700|ref|ZP_07827267.1| cold shock protein CspB [Veillonella sp. oral taxon 158 str. F0412] gi|237864126|gb|EEP65416.1| hypothetical protein VEIDISOL_01296 [Veillonella dispar ATCC 17748] gi|313441714|gb|EFR60139.1| cold shock protein CspB [Veillonella sp. oral taxon 158 str. F0412] Length = 65 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KGYGFI E G DVF+H SA+ G +LTEGQ V +D V + G Sbjct: 3 GKVKWFSAEKGYGFIERE----DGSDVFVHYSAIQDEGFKSLTEGQNVEFDIV-DGNRGP 57 Query: 65 YSAENLK 71 +A +K Sbjct: 58 QAANVVK 64 >gi|315303807|ref|ZP_07874300.1| conserved domain protein [Listeria ivanovii FSL F6-596] gi|313627819|gb|EFR96459.1| conserved domain protein [Listeria ivanovii FSL F6-596] Length = 66 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI ++ G+D+F+H +A+ G +L EGQ V ++ V+ + Sbjct: 1 MQNGKVKWFNNEKGYGFIE----SDGGEDIFVHFTAIQGDGYKSLEEGQAVIFEVVEGNR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--AQAANVE 64 >gi|312144553|ref|YP_003995999.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] gi|311905204|gb|ADQ15645.1| cold-shock DNA-binding domain protein [Halanaerobium sp. 'sapolanicus'] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M++ G +KW++ KGYGFI E GDDVF+H SA+ G L + Q V ++ V+ D Sbjct: 1 MIYTGKVKWFDAKKGYGFIERE----DGDDVFVHFSAIEDEGFKTLEDEQEVEFEIVEGD 56 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 57 -RGPQAENVVKL 67 >gi|304310767|ref|YP_003810365.1| Cold shock-like protein [gamma proteobacterium HdN1] gi|301796500|emb|CBL44708.1| Cold shock-like protein [gamma proteobacterium HdN1] Length = 69 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT + G DVF+H A+ + G L EGQ V+++ V+ G Sbjct: 5 TGTVKWFNEEKGFGFITQD---NGGPDVFVHFRAIQAEGFKTLKEGQPVSFN-VEKGQKG 60 Query: 64 KYSAENL 70 +A + Sbjct: 61 LQAANVV 67 >gi|307726451|ref|YP_003909664.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1003] gi|307586976|gb|ADN60373.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S + G L E Q V+++ Q Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEIKGNGFKTLAENQKVSFETKQG-P 56 Query: 62 NGKYSAE 68 G +A Sbjct: 57 KGLQAAN 63 >gi|147791391|emb|CAN59784.1| hypothetical protein VITISV_042163 [Vitis vinifera] Length = 247 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G ++W++ KG+GFITP E G+D+F+H+S++ S G +L EG+ V + V + +G Sbjct: 7 TGVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGE-DG 62 Query: 64 KYSAENLK 71 + A ++ Sbjct: 63 RTKAVDVT 70 >gi|55820886|ref|YP_139328.1| cold shock protein B [Streptococcus thermophilus LMG 18311] gi|55822803|ref|YP_141244.1| cold shock protein B [Streptococcus thermophilus CNRZ1066] gi|55736871|gb|AAV60513.1| cold shock protein B [Streptococcus thermophilus LMG 18311] gi|55738788|gb|AAV62429.1| cold shock protein B [Streptococcus thermophilus CNRZ1066] Length = 88 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFIT +E G D+F H S++ S G +L E Q V +D Sbjct: 22 IMANGTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFDVEVGQ 77 Query: 61 ANGKYSAENLK 71 A N+ Sbjct: 78 RG--PQAVNIT 86 >gi|15925694|ref|NP_373228.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu50] gi|15928289|ref|NP_375822.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus N315] gi|21284352|ref|NP_647440.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus MW2] gi|57651099|ref|YP_187517.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus COL] gi|82752283|ref|YP_418024.1| cold shock protein [Staphylococcus aureus RF122] gi|148269136|ref|YP_001248079.1| cold-shock DNA-binding domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150395218|ref|YP_001317893.1| cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus JH1] gi|151222817|ref|YP_001333639.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus str. Newman] gi|156981019|ref|YP_001443278.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu3] gi|221142463|ref|ZP_03566956.1| cold shock protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316706|ref|ZP_04839919.1| cold shock protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255007476|ref|ZP_05146077.2| cold shock protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|269204342|ref|YP_003283611.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus ED98] gi|284023028|ref|ZP_06377426.1| cold shock protein [Staphylococcus aureus subsp. aureus 132] gi|295429287|ref|ZP_06821909.1| cold shock-like protein cspLA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589211|ref|ZP_06947852.1| cold shock protein B [Staphylococcus aureus subsp. aureus MN8] gi|304379938|ref|ZP_07362667.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|2226347|gb|AAB61743.1| CspB [Staphylococcus aureus RN4220] gi|13702661|dbj|BAB43801.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus N315] gi|14248479|dbj|BAB58866.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu50] gi|21205796|dbj|BAB96488.1| cold shock protein cspB [Staphylococcus aureus subsp. aureus MW2] gi|57285285|gb|AAW37379.1| cold shock protein, CSD family [Staphylococcus aureus subsp. aureus COL] gi|82657814|emb|CAI82269.1| cold shock protein [Staphylococcus aureus RF122] gi|147742205|gb|ABQ50503.1| cold-shock DNA-binding protein family [Staphylococcus aureus subsp. aureus JH9] gi|149947670|gb|ABR53606.1| Cold-shock protein DNA-binding [Staphylococcus aureus subsp. aureus JH1] gi|150375617|dbj|BAF68877.1| cold shock protein CspB [Staphylococcus aureus subsp. aureus str. Newman] gi|156723154|dbj|BAF79571.1| cold shock protein [Staphylococcus aureus subsp. aureus Mu3] gi|262076632|gb|ACY12605.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus ED98] gi|269942290|emb|CBI50705.1| cold shock protein [Staphylococcus aureus subsp. aureus TW20] gi|283471919|emb|CAQ51130.1| conserved domain protein [Staphylococcus aureus subsp. aureus ST398] gi|285818367|gb|ADC38854.1| Cold shock protein CspG [Staphylococcus aureus 04-02981] gi|295127046|gb|EFG56690.1| cold shock-like protein cspLA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577722|gb|EFH96435.1| cold shock protein B [Staphylococcus aureus subsp. aureus MN8] gi|298695962|gb|ADI99184.1| cold shock protein, CSD family [Staphylococcus aureus subsp. aureus ED133] gi|302334319|gb|ADL24512.1| cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302752582|gb|ADL66759.1| cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341518|gb|EFM07428.1| cold shock protein B [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436869|gb|ADQ75940.1| cold shock protein B [Staphylococcus aureus subsp. aureus TCH60] gi|312831043|emb|CBX35885.1| cold shock protein cspC [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129533|gb|EFT85525.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS03] gi|315195215|gb|EFU25603.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS00] gi|315197908|gb|EFU28241.1| cold shock protein [Staphylococcus aureus subsp. aureus CGS01] gi|320141408|gb|EFW33251.1| cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144390|gb|EFW36155.1| cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323439708|gb|EGA97426.1| cold shock protein [Staphylococcus aureus O11] gi|323443281|gb|EGB00898.1| cold shock protein [Staphylococcus aureus O46] gi|329315425|gb|AEB89838.1| Cold shock protein [Staphylococcus aureus subsp. aureus T0131] gi|329725714|gb|EGG62193.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus 21172] gi|329731711|gb|EGG68071.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus 21189] gi|329732388|gb|EGG68738.1| cold shock protein CspD [Staphylococcus aureus subsp. aureus 21193] Length = 66 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E +G DVF+H S +AS G L EGQ VT++ + Sbjct: 1 MNNGTVKWFNAEKGFGFIEQE----NGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQR 56 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 57 G--DQAVNVQTV 66 >gi|310823251|ref|YP_003955609.1| Cold-shock protein CspB [Stigmatella aurantiaca DW4/3-1] gi|309396323|gb|ADO73782.1| Cold-shock protein CspB [Stigmatella aurantiaca DW4/3-1] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E +G+DVF H SA+ G L EGQ V ++ + Sbjct: 1 MAIGTVKWFNDAKGFGFIAQE----NGEDVFCHHSAINMDGFRTLAEGQKVEFEVTRGPK 56 Query: 62 NGKYSAENLKLV 73 + A+N++ V Sbjct: 57 G--FQAQNVRAV 66 >gi|113970957|ref|YP_734750.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-4] gi|114048181|ref|YP_738731.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-7] gi|113885641|gb|ABI39693.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4] gi|113889623|gb|ABI43674.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7] Length = 69 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V+Y+ Q G Sbjct: 5 TGIVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSEGFKTLAEGQKVSYEVEQGQ-KG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PQAANVVVL 69 >gi|320333925|ref|YP_004170636.1| cold-shock DNA-binding domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319755214|gb|ADV66971.1| cold-shock DNA-binding domain protein [Deinococcus maricopensis DSM 21211] Length = 86 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI +GS DVF H SA+ +AG L EG V +D + Sbjct: 1 MAVGRVKWFNAEKGFGFIEVDGS----PDVFAHFSAIKAAGFKKLNEGDEVEFDIEEGQR 56 Query: 62 NGKYSAENLKLVPKSSN 78 A N+ + + Sbjct: 57 GKGPQAANIVVTKAAPE 73 >gi|160880994|ref|YP_001559962.1| cold-shock DNA-binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160429660|gb|ABX43223.1| cold-shock DNA-binding domain protein [Clostridium phytofermentans ISDg] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KG+GFIT ++E+G+DVF+H S +AS G +L EGQ VT++ + Sbjct: 1 MNKGTVKWFNAQKGFGFIT---NSETGEDVFVHFSGIASEGFKSLEEGQNVTFEITKGAR 57 Query: 62 NGKYSAENLKL 72 A N+ + Sbjct: 58 G--MQATNVSI 66 >gi|322433205|ref|YP_004210426.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321165597|gb|ADW71299.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 69 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGF+ E DVF+H S + G +L EG VT+D +Q + Sbjct: 1 MYKGTVKWFNNAKGYGFL----GREGDPDVFVHYSPIQIDGYKSLEEGDAVTFDIIQGET 56 Query: 62 NGKYSAENLK 71 G+ A+ + Sbjct: 57 -GRPQADRVS 65 >gi|270264889|ref|ZP_06193153.1| Cold shock-like protein CspJ [Serratia odorifera 4Rx13] gi|270041187|gb|EFA14287.1| Cold shock-like protein CspJ [Serratia odorifera 4Rx13] Length = 70 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP + DVF+H SA+ S+ L EGQ V + V++ A G Sbjct: 6 TGLVKWFNADKGFGFITP---QDGSKDVFVHFSAIQSSDFKTLDEGQKVEFS-VESGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVIAL 70 >gi|254506150|ref|ZP_05118294.1| cold shock domain protein CspD [Vibrio parahaemolyticus 16] gi|219550968|gb|EED27949.1| cold shock domain protein CspD [Vibrio parahaemolyticus 16] Length = 73 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG DVF H S + G L GQ V ++ + Sbjct: 1 MATGTVKWFNNAKGFGFICPEGED---GDVFAHYSTIQMDGYRTLKAGQQVNFEVEEGPK 57 Query: 62 NGKYSAENLKLVPKS 76 A + V Sbjct: 58 G--SHASVVTPVEAQ 70 >gi|148559223|ref|YP_001258444.1| cold-shock family protein [Brucella ovis ATCC 25840] gi|148370480|gb|ABQ60459.1| cold-shock family protein [Brucella ovis ATCC 25840] Length = 69 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+G I P+ + DVF+H SAV AGL +L EGQ V Y+ V + Sbjct: 1 MANGTVKFFNSTKGFGSIQPD---DGSSDVFVHISAVERAGLHSLVEGQKVGYEVVADRR 57 Query: 62 NGKYSAENLK 71 +GK +A NL+ Sbjct: 58 SGKSAAANLE 67 >gi|41406767|ref|NP_959603.1| CspA_2 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118467308|ref|YP_880121.1| hypothetical protein MAV_0852 [Mycobacterium avium 104] gi|254773743|ref|ZP_05215259.1| hypothetical protein MaviaA2_03582 [Mycobacterium avium subsp. avium ATCC 25291] gi|41395117|gb|AAS02986.1| CspA_2 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118168595|gb|ABK69492.1| conserved domain protein [Mycobacterium avium 104] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFITP+ + D+F+H S + +G +L E Q V +D Q A Sbjct: 1 MAQGTVKWFNGEKGFGFITPD---DGTKDLFVHYSEIQGSGYRSLDENQRVQFDVEQG-A 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPQA 61 >gi|90420715|ref|ZP_01228621.1| cold-shock protein [Aurantimonas manganoxydans SI85-9A1] gi|90335006|gb|EAS48767.1| cold-shock protein [Aurantimonas manganoxydans SI85-9A1] Length = 70 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI+P+ G DVF+H S+V +G+ +LTE Q V++D + Sbjct: 1 MAQTGTVKFFNMDKGFGFISPDA---GGSDVFVHISSVERSGMTSLTENQKVSFDTEPDP 57 Query: 61 ANGKYSAENLK 71 A N++ Sbjct: 58 RGKGPKAVNIQ 68 >gi|220930266|ref|YP_002507175.1| cold-shock DNA-binding domain protein [Clostridium cellulolyticum H10] gi|220000594|gb|ACL77195.1| cold-shock DNA-binding domain protein [Clostridium cellulolyticum H10] Length = 66 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI + G+DVF+H SA+ G L EG V +D V+ A Sbjct: 1 MEKGRVKWFNAEKGFGFIERD----GGNDVFVHFSAITMDGYKTLEEGSEVVFDVVEG-A 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 KGPQAANV 63 >gi|170691171|ref|ZP_02882337.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] gi|170144420|gb|EDT12582.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S ++ G L E Q V+++ Q Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGNGFKTLAENQKVSFETKQG-P 56 Query: 62 NGKYSAE 68 G +A Sbjct: 57 KGLQAAN 63 >gi|167566047|ref|ZP_02358963.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis EO147] gi|167573125|ref|ZP_02365999.1| cold-shock DNA-binding domain protein [Burkholderia oklahomensis C6786] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ GDD+F H S + G L E Q V+++ + Sbjct: 1 MDTGTVKWFNDSKGFGFISPDS---GGDDLFAHFSEIRGEGFKTLAENQKVSFE-TKRGP 56 Query: 62 NGKYSAENLKLV 73 G +A N+K + Sbjct: 57 KGLQAA-NIKAL 67 >gi|54025407|ref|YP_119649.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54016915|dbj|BAD58285.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +GS+KW+N +KG+GFI +G G DVF+H SA+ +G L EGQ V ++ Q Sbjct: 1 MAQGSVKWFNGEKGFGFIAQDG---GGPDVFVHYSAIGGSGFKTLDEGQRVEFEIGQGQK 57 Query: 62 NGKYSAENLKLV 73 A++++ + Sbjct: 58 G--PQAQDVRAI 67 >gi|328545836|ref|YP_004305945.1| cold shock transcription regulator [polymorphum gilvum SL003B-26A1] gi|326415576|gb|ADZ72639.1| Probable cold shock transcription regulator [Polymorphum gilvum SL003B-26A1] Length = 68 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI PE + DVF+H SAV +G+ L EGQ V ++ Q D Sbjct: 1 MKTGTVKFFNGQKGFGFIQPE---DGSRDVFVHISAVERSGIGRLDEGQKVQFELEQ-DR 56 Query: 62 NGKYSAENLKLV 73 G+ SA NL+L+ Sbjct: 57 QGRSSAANLQLL 68 >gi|225431120|ref|XP_002266115.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 241 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G ++W++ KG+GFITP E G+D+F+H+S++ S G +L EG+ V + V + +G Sbjct: 7 TGVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGE-DG 62 Query: 64 KYSAENLK 71 + A ++ Sbjct: 63 RTKAVDVT 70 >gi|149196184|ref|ZP_01873239.1| stress protein, member of the CspA-family [Lentisphaera araneosa HTCC2155] gi|149140445|gb|EDM28843.1| stress protein, member of the CspA-family [Lentisphaera araneosa HTCC2155] Length = 68 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI + G DVF+H SA+ G L EGQ V +D V++ G Sbjct: 5 QGRVKWFNETKGFGFIEQD----GGKDVFVHFSAIQGQGFKTLEEGQKVEFD-VEDGQKG 59 Query: 64 KYSAENLKLV 73 A NL ++ Sbjct: 60 PQ-AVNLTVL 68 >gi|145225802|ref|YP_001136480.1| cold-shock DNA-binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315442494|ref|YP_004075373.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] gi|145218288|gb|ABP47692.1| cold-shock DNA-binding protein family [Mycobacterium gilvum PYR-GCK] gi|315260797|gb|ADT97538.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI P+ ++E DVF+H S++ +G +L E Q V ++ Q A Sbjct: 1 MAQGTVKWFNGDKGFGFIAPDNASE---DVFVHYSSITGSGFKSLDENQRVEFEIEQG-A 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPQA 61 >gi|89097883|ref|ZP_01170770.1| cold shock protein [Bacillus sp. NRRL B-14911] gi|89087385|gb|EAR66499.1| cold shock protein [Bacillus sp. NRRL B-14911] Length = 66 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFI T G DVF+H SA+ S G +L EG+ VT++ V+ + Sbjct: 1 MNTGKVKWFNAEKGFGFIE----TSEGQDVFVHFSAIQSEGFKSLEEGEAVTFEIVEGN- 55 Query: 62 NGKYSAENLK 71 G ++ +K Sbjct: 56 RGPQASNVVK 65 >gi|170723394|ref|YP_001751082.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida W619] gi|169761397|gb|ACA74713.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619] Length = 70 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT++ VQ Sbjct: 4 RQNGTVKWFNDEKGYGFITPE----SGADLFVHFRAIEGNGFKSLKEGQKVTFEAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++++ Sbjct: 60 G--LQADKVQVL 69 >gi|123444003|ref|YP_001007973.1| major cold shock protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163163|ref|YP_004299740.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|1778828|gb|AAB40924.1| major cold shock protein CSPA2 [Yersinia enterocolitica] gi|122090964|emb|CAL13846.1| major cold shock protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318603953|emb|CBY25451.1| cold shock protein CspG [Yersinia enterocolitica subsp. palearctica Y11] gi|325667393|gb|ADZ44037.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862836|emb|CBX72977.1| cold shock-like protein cspB [Yersinia enterocolitica W22703] Length = 70 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP + DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVIAL 70 >gi|108757963|ref|YP_633461.1| cold-shock protein CspB [Myxococcus xanthus DK 1622] gi|4193392|gb|AAD10034.1| CspB [Myxococcus xanthus] gi|108461843|gb|ABF87028.1| cold-shock protein CspB [Myxococcus xanthus DK 1622] Length = 66 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + +G+DVF H +A+ G L EGQ V ++ + Sbjct: 1 MAIGTVKWFNDAKGFGFIAQD----NGEDVFCHHTAINMDGFRTLQEGQQVEFEVTRGPK 56 Query: 62 NGKYSAENLKLV 73 A+N++ V Sbjct: 57 G--LQAQNVRAV 66 >gi|62180569|ref|YP_216986.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128202|gb|AAX65905.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715045|gb|EFZ06616.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 136 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+NP+KG+GFITP + DVF+H SA+ S L E Q V + Q Sbjct: 6 TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGQK 60 >gi|332140725|ref|YP_004426463.1| putative Cold shock-like protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550747|gb|AEA97465.1| putative Cold shock-like protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 70 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GF+TPE G DVF+H ++AS G L EGQ V+++ Q G Sbjct: 6 NGTVKWFNEEKGFGFLTPEA---GGKDVFVHFRSIASDGFKTLAEGQEVSFEVEQGQ-KG 61 Query: 64 KYSAENL 70 +A + Sbjct: 62 PQAANVV 68 >gi|320352985|ref|YP_004194324.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus DSM 2032] gi|320121487|gb|ADW17033.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus DSM 2032] Length = 66 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI E G DVF+H SA++ +G L EG V ++ V + Sbjct: 1 MLKGTVKWFNESKGFGFIEQEA----GKDVFVHYSAISGSGFKTLNEGDKVQFEIV-DGP 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 KGPAAANVTK 65 >gi|319938152|ref|ZP_08012550.1| cold shock DNA-binding protein [Coprobacillus sp. 29_1] gi|319806673|gb|EFW03322.1| cold shock DNA-binding protein [Coprobacillus sp. 29_1] Length = 68 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+ DKG+GFIT EG DVF+H SA+ + G L EGQ V +D V+ D Sbjct: 1 MSTGKVKWFKSDKGFGFITLEGEN---KDVFVHFSAINTDGFKTLEEGQTVEFDIVEGDR 57 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 58 G--PQAANVTVI 67 >gi|297586963|ref|ZP_06945608.1| cold shock protein CspA [Finegoldia magna ATCC 53516] gi|297574944|gb|EFH93663.1| cold shock protein CspA [Finegoldia magna ATCC 53516] Length = 81 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++KW+N KG+GFIT E D+F+H+SA+ G L EGQ V+YD V+ Sbjct: 15 IMSNGTVKWFNSTKGFGFIT----GEDNKDIFVHQSAIQQEGFRTLEEGQKVSYD-VEAS 69 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 70 EKGDRAVNVVKL 81 >gi|50952760|gb|AAT90293.1| putative cold shock protein [uncultured proteobacterium eBACred25D05] Length = 68 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI P ++ G+DVF+H SAV +GL L E QLV ++ V+ Sbjct: 1 MPQGKVKWFNTTKGFGFIEP---SDGGNDVFVHISAVQKSGLKGLAEDQLVNFELVEG-R 56 Query: 62 NGKYSAENLKL 72 +G+ A+ L L Sbjct: 57 DGRQMADELSL 67 >gi|91777357|ref|YP_552565.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|296159608|ref|ZP_06842431.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|91690017|gb|ABE33215.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] gi|158187225|gb|ABW22844.1| hypothetical protein [Burkholderia sp. NCIMB 10467] gi|295890052|gb|EFG69847.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S ++ G L E Q V+++ Q Sbjct: 1 MDTGTVKWFNDSKGFGFITPD---KGGDDLFAHFSEISGDGFKTLAENQKVSFETKQGPK 57 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 58 G--LQAANIKPM 67 >gi|119385865|ref|YP_916920.1| cold-shock DNA-binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119376460|gb|ABL71224.1| cold-shock DNA-binding protein family [Paracoccus denitrificans PD1222] Length = 68 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE G DVFLH SA+ AGL ++ +GQ VT++ ++ Sbjct: 1 MANGTVKWFNAAKGFGFIAPEH---GGKDVFLHISALERAGLNSVADGQAVTFEI-ESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA L L Sbjct: 57 DGRESASRLAL 67 >gi|290958776|ref|YP_003489958.1| cold shock protein [Streptomyces scabiei 87.22] gi|260648302|emb|CBG71413.1| cold shock protein [Streptomyces scabiei 87.22] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF H S +A++G L EGQ VT+D Q Sbjct: 1 MASGTVKWFNSEKGFGFIEQEG---GGPDVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|163760029|ref|ZP_02167113.1| cold-shock DNA-binding domain protein [Hoeflea phototrophica DFL-43] gi|162282987|gb|EDQ33274.1| cold-shock DNA-binding domain protein [Hoeflea phototrophica DFL-43] Length = 69 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K+YN KG+GFI P+ + DVF+H +A+ AG+ L EGQ V++D ++ Sbjct: 1 MQIGTVKFYNDQKGFGFIAPD---DGSKDVFVHATALERAGMRGLAEGQKVSFDTAEDRR 57 Query: 62 NGKYSAENLK 71 GK + +N++ Sbjct: 58 TGKTAVQNIQ 67 >gi|29831319|ref|NP_825953.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|307324568|ref|ZP_07603775.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|29608434|dbj|BAC72488.1| putative cold shock protein [Streptomyces avermitilis MA-4680] gi|306889812|gb|EFN20791.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 67 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATQGFRELQEGQKVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|329296326|ref|ZP_08253662.1| Cold shock-like protein cspC [Plautia stali symbiont] Length = 69 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLVEGQRVEFEI-QDGQKG 60 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 61 P-AAVNVTAI 69 >gi|184200633|ref|YP_001854840.1| cold shock protein [Kocuria rhizophila DC2201] gi|183580863|dbj|BAG29334.1| cold shock protein [Kocuria rhizophila DC2201] Length = 67 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFITP+ + DVF+H S + S G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFITPDDAD---GDVFVHYSEIQSGGFRTLEENQRVEFEIGQGQK 57 Query: 62 NGKYSAENL 70 + + + Sbjct: 58 GPQATGVTV 66 >gi|19551558|ref|NP_599560.1| cold shock protein [Corynebacterium glutamicum ATCC 13032] gi|62389205|ref|YP_224607.1| cold-shock protein CspA [Corynebacterium glutamicum ATCC 13032] gi|21323072|dbj|BAB97701.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032] gi|41324538|emb|CAF18878.1| COLD-SHOCK PROTEIN CSPA [Corynebacterium glutamicum ATCC 13032] Length = 67 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP+KG+GFI P ++ DVF+H S + G L E QLV ++ + Sbjct: 1 MAQGTVKWFNPEKGFGFIAP---SDGSADVFVHYSEIEGNGFRTLEENQLVEFEIGEGAK 57 Query: 62 NGKYSAE 68 + A Sbjct: 58 GLQAQAV 64 >gi|332995286|gb|AEF05341.1| putative cold shock-like protein cspG [Alteromonas sp. SN2] Length = 69 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKGYGF+T + G DVF+H A+ S G L EGQ V ++ V+ G Sbjct: 5 TGTVKWFNADKGYGFLTQD---NGGKDVFVHFRAIVSDGYKTLPEGQRVEFE-VEEGQKG 60 Query: 64 KYSAEN 69 +A Sbjct: 61 LQAANV 66 >gi|325278203|ref|ZP_08143698.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] gi|324096664|gb|EGB95015.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] Length = 70 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT++ VQ Sbjct: 4 RQNGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQKVTFEAVQGQK 59 Query: 62 NGKYSAENLKL 72 A+ +++ Sbjct: 60 G--MQADKVQV 68 >gi|294139962|ref|YP_003555940.1| stress response protein CspD [Shewanella violacea DSS12] gi|293326431|dbj|BAJ01162.1| stress response protein CspD [Shewanella violacea DSS12] Length = 73 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI P G+DVF H SA+ G L GQ V Y V+ Sbjct: 1 MMKGTVKWFNNTKGFGFICP---GAGGEDVFAHYSAIQMEGYRTLVAGQTVEYK-VEAGP 56 Query: 62 NGKYS 66 G ++ Sbjct: 57 KGMHA 61 >gi|254508069|ref|ZP_05120196.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus 16] gi|323496408|ref|ZP_08101466.1| cold-shock protein, DNA-binding [Vibrio sinaloensis DSM 21326] gi|219549036|gb|EED26034.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus 16] gi|323318685|gb|EGA71638.1| cold-shock protein, DNA-binding [Vibrio sinaloensis DSM 21326] Length = 70 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT E G DVF+H A+ G L EGQ V ++ Q Sbjct: 6 TGTVKWFNEEKGFGFITQE---NGGADVFVHFRAITGEGFKTLAEGQKVAFEVEQGQKG- 61 Query: 64 KYSAENLKLV 73 A N++++ Sbjct: 62 -PQAANVEVL 70 >gi|58039299|ref|YP_191263.1| cold shock protein [Gluconobacter oxydans 621H] gi|58001713|gb|AAW60607.1| Cold shock protein [Gluconobacter oxydans 621H] Length = 68 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI S++ DVF+H SA+ AGL NL EGQ V+Y+ ++ Sbjct: 1 MATGTVKWFNATKGFGFIQ---SSDGTTDVFVHISALEKAGLQNLNEGQQVSYEI-EDGR 56 Query: 62 NGKYSAENLKLV 73 NG+ SA +LK + Sbjct: 57 NGRKSAGSLKAL 68 >gi|297201136|ref|ZP_06918533.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|197713662|gb|EDY57696.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] Length = 67 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ VT+D Q Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|194014976|ref|ZP_03053593.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|194014002|gb|EDW23567.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 66 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 MLEGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN- 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGPQAANV 63 >gi|149242120|pdb|2I5L|X Chain X, Crystal Structure Of Bacillus Subtilis Cold Shock Protein Variant Bs-Cspb M1rE3KK65I Length = 67 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + G Sbjct: 3 KGKVKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN-RG 57 Query: 64 KYSAEN 69 +A Sbjct: 58 PQAANV 63 >gi|170722579|ref|YP_001750267.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida W619] gi|169760582|gb|ACA73898.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619] Length = 83 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G T+ D+F H SA+ G L GQ VT++ VQ Sbjct: 1 MASGKVKWFNNAKGYGFINEDGKTD---DLFAHYSAIKMDGYKTLKAGQAVTFEIVQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|134293708|ref|YP_001117444.1| cold-shock DNA-binding protein family protein [Burkholderia vietnamiensis G4] gi|134136865|gb|ABO57979.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis G4] Length = 67 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ GDD+F H S + G L EGQ V+Y+ Sbjct: 1 MDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAEGQKVSYEV----K 53 Query: 62 NGKYSAENLKLVPK 75 G + + P+ Sbjct: 54 RGPKGLQASSITPQ 67 >gi|240173035|ref|ZP_04751693.1| putative cold shock protein A [Mycobacterium kansasii ATCC 12478] gi|254821833|ref|ZP_05226834.1| putative cold shock protein A [Mycobacterium intracellulare ATCC 13950] Length = 67 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H + + +G L E Q V ++ + Sbjct: 1 MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEIGHS-P 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPQA 61 >gi|28199264|ref|NP_779578.1| cold shock protein [Xylella fastidiosa Temecula1] gi|71276139|ref|ZP_00652419.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon] gi|71898360|ref|ZP_00680533.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|71902362|ref|ZP_00684335.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|170730633|ref|YP_001776066.1| cold-shock DNA-binding domain-containing protein [Xylella fastidiosa M12] gi|182681990|ref|YP_001830150.1| cold-shock DNA-binding domain-containing protein [Xylella fastidiosa M23] gi|28057370|gb|AAO29227.1| cold shock protein [Xylella fastidiosa Temecula1] gi|71163057|gb|EAO12779.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon] gi|71727903|gb|EAO30135.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|71731883|gb|EAO33941.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|167965426|gb|ACA12436.1| putative cold-shock DNA-binding domain protein [Xylella fastidiosa M12] gi|182632100|gb|ACB92876.1| cold-shock DNA-binding domain protein [Xylella fastidiosa M23] gi|307578255|gb|ADN62224.1| cold shock protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 67 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ KG+GFI P+ + +VF+H S + S G +L EGQ VTYD Q Sbjct: 1 MQSGTVKWFSDQKGFGFILPD---DGTPEVFVHYSGINSKGFRSLHEGQRVTYDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--PQASNITPI 67 >gi|148273662|ref|YP_001223223.1| putative cold shock protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170783059|ref|YP_001711393.1| putative cold shock protein [Clavibacter michiganensis subsp. sepedonicus] gi|147831592|emb|CAN02560.1| putative cold shock protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157629|emb|CAQ02827.1| putative cold shock protein [Clavibacter michiganensis subsp. sepedonicus] Length = 72 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTES--GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 + G++KW+N +KG+GFIT + DVF+H SA+ +G L EGQ V ++ Q Sbjct: 1 MANGTVKWFNGEKGFGFITVDAVEGGPAQQDVFVHYSAIEMSGYKVLEEGQRVAFEIGQG 60 Query: 60 DANGKYSAENLKL 72 AEN+ L Sbjct: 61 SKG--LQAENVTL 71 >gi|325660793|ref|ZP_08149421.1| cold shock protein cspA [Lachnospiraceae bacterium 4_1_37FAA] gi|331085477|ref|ZP_08334562.1| cold shock protein cspA [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472867|gb|EGC76077.1| cold shock protein cspA [Lachnospiraceae bacterium 4_1_37FAA] gi|330407715|gb|EGG87213.1| cold shock protein cspA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 66 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW++ KGYGFI+ E+G+DVF+H S + G L EGQ V ++ + A Sbjct: 1 MNKGTVKWFSNQKGYGFIS----DEAGNDVFVHYSGLNMEGFKTLEEGQAVEFEVTEG-A 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 KGPQAINVVKL 66 >gi|94985111|ref|YP_604475.1| cold-shock DNA-binding domain-containing protein [Deinococcus geothermalis DSM 11300] gi|94555392|gb|ABF45306.1| cold-shock DNA-binding domain protein [Deinococcus geothermalis DSM 11300] Length = 89 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI DVF+H SA+ S+G L EG V ++ Sbjct: 1 MAQGRVKWFNVEKGYGFIE----HPGNPDVFVHYSAIQSSGFRKLNEGDEVEFEVEPGQG 56 Query: 62 NGKYSAENLKL 72 N A+N+ + Sbjct: 57 NKGPQAKNVVV 67 >gi|126174687|ref|YP_001050836.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS155] gi|153000986|ref|YP_001366667.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS185] gi|160875699|ref|YP_001555015.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS195] gi|217973054|ref|YP_002357805.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS223] gi|304409064|ref|ZP_07390685.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183] gi|307303067|ref|ZP_07582822.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175] gi|125997892|gb|ABN61967.1| cold-shock DNA-binding protein family [Shewanella baltica OS155] gi|151365604|gb|ABS08604.1| putative cold-shock DNA-binding domain protein [Shewanella baltica OS185] gi|160861221|gb|ABX49755.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195] gi|217498189|gb|ACK46382.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223] gi|304352885|gb|EFM17282.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183] gi|306913427|gb|EFN43849.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175] gi|315267888|gb|ADT94741.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678] Length = 68 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G+DVF H S + G L GQ V ++ Sbjct: 1 MASGTVKWFNNAKGFGFICPD---QGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEAGPK 57 Query: 62 NGKYSA 67 SA Sbjct: 58 GMHASA 63 >gi|311068850|ref|YP_003973773.1| cold shock protein [Bacillus atrophaeus 1942] gi|310869367|gb|ADP32842.1| cold shock protein [Bacillus atrophaeus 1942] Length = 66 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI E GDDVF+H SA+ G +L EG+ V++D Q Sbjct: 1 MEQGKVKWFNAEKGFGFIEREA----GDDVFVHFSAIQGEGFKSLEEGESVSFDVEQGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQASNVQ 64 >gi|295092996|emb|CBK82087.1| cold-shock DNA-binding protein family [Coprococcus sp. ART55/1] Length = 66 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI E G DVF+H SA+ G L EG V Y+ V + Sbjct: 1 MKTGKVKWFNAKKGYGFIC----DEDGADVFVHFSALNMEGFKVLEEGDTVEYEVV-DGE 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 KGPQAANVTKL 66 >gi|260779178|ref|ZP_05888070.1| cold shock protein CspD [Vibrio coralliilyticus ATCC BAA-450] gi|260605342|gb|EEX31637.1| cold shock protein CspD [Vibrio coralliilyticus ATCC BAA-450] Length = 73 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG DVF H S + G L GQ VT++ V+ Sbjct: 1 MATGTVKWFNNAKGFGFICPEGED---GDVFAHYSTIKMDGYRTLKAGQQVTFE-VEEGP 56 Query: 62 NGKYSAENLKLVPKS 76 G +++ + + ++ Sbjct: 57 KGYHASSVVPVEAQA 71 >gi|149377667|ref|ZP_01895403.1| cold-shock DNA-binding domain family protein [Marinobacter algicola DG893] gi|149358020|gb|EDM46506.1| cold-shock DNA-binding domain family protein [Marinobacter algicola DG893] Length = 68 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT E G DVF+H SA+ +G L EGQ V + Q Sbjct: 5 TGTVKFFNEAKGFGFITRE----GGPDVFVHYSAIQGSGFKTLAEGQQVEFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 60 -PQAENVTAI 68 >gi|147812546|emb|CAN68380.1| hypothetical protein VITISV_018906 [Vitis vinifera] Length = 189 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW++ KG+GFI P+ + G+D+F+H++++ S G L+EG+ V + V + +G Sbjct: 8 TGTVKWFSGQKGFGFIAPD---DGGEDLFVHQTSIRSDGFRTLSEGETVEF-AVDHGEDG 63 Query: 64 KYSAENLKLV 73 + A + V Sbjct: 64 RTKAVEVTAV 73 >gi|28275223|ref|NP_717259.2| cold shock domain-contain protein [Shewanella oneidensis MR-1] Length = 69 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V+Y+ Q G Sbjct: 5 TGVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSDGFKTLAEGQKVSYEVEQGQ-KG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PQAANVVVL 69 >gi|269216140|ref|ZP_06159994.1| cold shock protein B [Slackia exigua ATCC 700122] gi|269130399|gb|EEZ61477.1| cold shock protein B [Slackia exigua ATCC 700122] Length = 79 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++P+KGYGFI+ G+D+F+H S + G L EG V ++ + Sbjct: 13 MAEGTVKWFSPEKGYGFISQ----ADGEDLFVHFSEIKMDGYKTLEEGARVQFEVT-TGS 67 Query: 62 NGKYSAENLKLV 73 NGK A N+ + Sbjct: 68 NGKLQASNVSPL 79 >gi|285017895|ref|YP_003375606.1| cold-shock protein [Xanthomonas albilineans GPE PC73] gi|283473113|emb|CBA15619.1| probable cold-shock protein [Xanthomonas albilineans] Length = 81 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFITPE T+ D+F+H A+ G +L EGQ V++ VQ Sbjct: 15 QGTVKWFNDAKGFGFITPEAGTDLS-DLFVHFRAIQGTGFKSLQEGQKVSFVAVQGQKG- 72 Query: 64 KYSAENLKLV 73 A+ +++V Sbjct: 73 -MQADQVQVV 81 >gi|257068250|ref|YP_003154505.1| cold-shock DNA-binding protein family [Brachybacterium faecium DSM 4810] gi|256559068|gb|ACU84915.1| cold-shock DNA-binding protein family [Brachybacterium faecium DSM 4810] Length = 67 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +GS+KW+N +KGYGFI +G G DVF+H S + G L EGQ V ++ Q D Sbjct: 1 MAQGSVKWFNAEKGYGFIEIDG---GGADVFVHHSKIDMDGYRALDEGQRVEFEVSQGDK 57 Query: 62 NGKYSAENLKLV 73 AE ++ + Sbjct: 58 G--PQAEQVRPL 67 >gi|163761575|ref|ZP_02168646.1| cold shock protein [Hoeflea phototrophica DFL-43] gi|162281171|gb|EDQ31471.1| cold shock protein [Hoeflea phototrophica DFL-43] Length = 70 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI P+ G D+F+H SAV ++G+ L E Q V++D + Sbjct: 1 MAETGTVKFFNVDKGFGFIKPD---NGGADIFVHISAVQASGMTGLEENQKVSFDTEPDR 57 Query: 61 ANGKYSAENLKL 72 A NL+L Sbjct: 58 RGKGPKAVNLRL 69 >gi|15966083|ref|NP_386436.1| putative cold shock transcription regulator protein [Sinorhizobium meliloti 1021] gi|150397438|ref|YP_001327905.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|307305637|ref|ZP_07585384.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307317640|ref|ZP_07597079.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|15075353|emb|CAC46909.1| Putative cold shock transcription regulator [Sinorhizobium meliloti 1021] gi|150028953|gb|ABR61070.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] gi|306896798|gb|EFN27545.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306902340|gb|EFN32936.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 71 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI PE G D+F+H SAV ++GL LTE Q V++D + Sbjct: 1 MAETGTVKFFNTDKGFGFIKPE---NGGADIFVHISAVQASGLSGLTENQKVSFDTEPDR 57 Query: 61 ANGKYSAENLKLV 73 A NL++V Sbjct: 58 RGKGPKAVNLQIV 70 >gi|51244214|ref|YP_064098.1| cold-shock protein (CspB) [Desulfotalea psychrophila LSv54] gi|50875251|emb|CAG35091.1| probable cold-shock protein (CspB) [Desulfotalea psychrophila LSv54] Length = 66 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E GDD+F+H +++ ++G L EG VT+D Q Sbjct: 1 MAEGTVKWFNDAKGFGFIEQE----GGDDLFVHHTSINASGFKTLEEGARVTFDIEQGPK 56 Query: 62 NGKYSAENLKLV 73 +A N+ ++ Sbjct: 57 G--PAAANVTVI 66 >gi|27382579|ref|NP_774108.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27355751|dbj|BAC52733.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 71 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +L EGQ +T++ + Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLAEGQRITFEVEPDK 57 Query: 61 ANGKYSAENLKLV 73 A NL ++ Sbjct: 58 KGKGPKAVNLVIL 70 >gi|325962239|ref|YP_004240145.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] gi|323468326|gb|ADX72011.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] Length = 68 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG+++W+N +KGYGFIT +GS GDDVF+H SA+ G L EGQ V + + + Sbjct: 1 MARGTVRWFNAEKGYGFITVDGS---GDDVFVHWSAIQGEGYRALDEGQRVELEVGEGEK 57 Query: 62 NGKYSAENLKLV 73 AE+++ V Sbjct: 58 G--PQAESVRPV 67 >gi|288941163|ref|YP_003443403.1| cold-shock DNA-binding domain-containing protein [Allochromatium vinosum DSM 180] gi|288896535|gb|ADC62371.1| cold-shock DNA-binding domain protein [Allochromatium vinosum DSM 180] Length = 70 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI E G DVF+H SA+ AG L EGQ VT + Q Sbjct: 8 GTVKWFNDEKGYGFIERE----GGKDVFVHYSAINGAGRKTLAEGQQVTMEVTQGPKG-- 61 Query: 65 YSAENLK 71 AEN+ Sbjct: 62 PQAENVT 68 >gi|150020181|ref|YP_001305535.1| cold-shock DNA-binding domain-containing protein [Thermosipho melanesiensis BI429] gi|149792702|gb|ABR30150.1| putative cold-shock DNA-binding domain protein [Thermosipho melanesiensis BI429] Length = 65 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KGYGFIT E G+D+F+H SA+ + G L EGQ V ++ VQ+ G Sbjct: 2 KGTVKWFDAKKGYGFIT----KEDGEDIFVHWSAIQTEGFKTLKEGQEVEFE-VQDGQKG 56 Query: 64 KYSAENLKLV 73 +A N+K + Sbjct: 57 PQAA-NVKPL 65 >gi|258621691|ref|ZP_05716722.1| cold shock-like protein CspD [Vibrio mimicus VM573] gi|258626362|ref|ZP_05721209.1| cold shock-like protein CspD [Vibrio mimicus VM603] gi|262171824|ref|ZP_06039502.1| cold shock protein CspD [Vibrio mimicus MB-451] gi|262402499|ref|ZP_06079060.1| cold shock protein CspD [Vibrio sp. RC586] gi|258581414|gb|EEW06316.1| cold shock-like protein CspD [Vibrio mimicus VM603] gi|258585922|gb|EEW10640.1| cold shock-like protein CspD [Vibrio mimicus VM573] gi|261892900|gb|EEY38886.1| cold shock protein CspD [Vibrio mimicus MB-451] gi|262351281|gb|EEZ00414.1| cold shock protein CspD [Vibrio sp. RC586] Length = 73 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG D+F H S + G L GQ V+Y Q Sbjct: 1 MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMDGYRTLKAGQQVSYQVEQG-P 56 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 57 KGYHASCVVPI 67 >gi|238026492|ref|YP_002910723.1| Cold-shock DNA-binding domain-containing protein [Burkholderia glumae BGR1] gi|237875686|gb|ACR28019.1| Cold-shock DNA-binding domain protein [Burkholderia glumae BGR1] Length = 67 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKTGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|269797859|ref|YP_003311759.1| cold-shock DNA-binding domain protein [Veillonella parvula DSM 2008] gi|282848848|ref|ZP_06258238.1| cold-shock DNA-binding domain protein [Veillonella parvula ATCC 17745] gi|294791752|ref|ZP_06756900.1| conserved domain protein [Veillonella sp. 6_1_27] gi|294793613|ref|ZP_06758750.1| conserved domain protein [Veillonella sp. 3_1_44] gi|269094488|gb|ACZ24479.1| cold-shock DNA-binding domain protein [Veillonella parvula DSM 2008] gi|282581353|gb|EFB86746.1| cold-shock DNA-binding domain protein [Veillonella parvula ATCC 17745] gi|294455183|gb|EFG23555.1| conserved domain protein [Veillonella sp. 3_1_44] gi|294456982|gb|EFG25344.1| conserved domain protein [Veillonella sp. 6_1_27] Length = 65 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KGYGFI E G DVF+H SA+ G +LTEGQ V ++ V + G Sbjct: 3 GKVKWFSAEKGYGFIERE----DGSDVFVHYSAIQDEGFKSLTEGQNVEFEIV-DGNRGP 57 Query: 65 YSAENLK 71 +A +K Sbjct: 58 QAANVVK 64 >gi|197285535|ref|YP_002151407.1| cold shock-like protein [Proteus mirabilis HI4320] gi|227356030|ref|ZP_03840421.1| cold shock family protein [Proteus mirabilis ATCC 29906] gi|194683022|emb|CAR43496.1| cold shock-like protein [Proteus mirabilis HI4320] gi|227163807|gb|EEI48715.1| cold shock family protein [Proteus mirabilis ATCC 29906] Length = 70 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + +N A G Sbjct: 6 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFTI-ENGAKG 61 Query: 64 KYSAENLKL 72 +A L Sbjct: 62 PAAANVTAL 70 >gi|183984791|ref|YP_001853082.1| cold shock protein a, CspA [Mycobacterium marinum M] gi|183178117|gb|ACC43227.1| cold shock protein a, CspA [Mycobacterium marinum M] Length = 67 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFITP+ + D+F+H S + +G +L E Q V ++ Q Sbjct: 1 MAQGTVKWFNGEKGFGFITPD---DGTKDLFVHYSEIQGSGYRSLEENQRVQFEVEQGTK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|167583194|ref|ZP_02376068.1| cold-shock DNA-binding domain protein [Burkholderia thailandensis TXDOH] Length = 67 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFITP+G GDD+F H S + G L EGQ V+Y+ ++ Sbjct: 1 MDTGTVKWFNDNKGFGFITPDG---GGDDLFAHFSEIRGDGFKTLAEGQKVSYE-TKHGP 56 Query: 62 NGKYSAENL 70 G ++ + Sbjct: 57 KGLQASNIV 65 >gi|255640679|gb|ACU20624.1| unknown [Glycine max] Length = 170 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP + DD+F+H +++ S G +L+EGQ V + + +G Sbjct: 8 TGMVKWFNSQKGFGFITP---QDGTDDLFVHFTSIRSDGYRSLSEGQSVEF-LLDYGDDG 63 Query: 64 KYSAENLK 71 + A ++ Sbjct: 64 RTMAVDVT 71 >gi|295426499|ref|ZP_06819149.1| cold shock protein CspA [Lactobacillus amylolyticus DSM 11664] gi|295063867|gb|EFG54825.1| cold shock protein CspA [Lactobacillus amylolyticus DSM 11664] Length = 66 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N D+G+GFIT G DVF+H S++ + G +L EGQ V+YD Q D Sbjct: 1 MQNGTVKWFNADRGFGFIT----GSDGKDVFVHFSSIKTNGFKSLEEGQKVSYDVEQED- 55 Query: 62 NGKYSAENL 70 G + + Sbjct: 56 RGPQATNVV 64 >gi|260774155|ref|ZP_05883070.1| cold shock protein CspE [Vibrio metschnikovii CIP 69.14] gi|260611116|gb|EEX36320.1| cold shock protein CspE [Vibrio metschnikovii CIP 69.14] Length = 69 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E+G DVF H SA+ S G L EGQ V + Q Sbjct: 6 TGTVKWFNETKGFGFI----KQENGPDVFAHFSAIQSEGFRTLAEGQKVEFVITQGQKG- 60 Query: 64 KYSAENLKLV 73 AE++K++ Sbjct: 61 -PQAESIKVL 69 >gi|256396570|ref|YP_003118134.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256362796|gb|ACU76293.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 68 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V+++ Q Sbjct: 1 MTDGTVKWFNAEKGFGFIEQDG---GGADVFAHFSNIAADGYRELQEGQRVSFEVTQGQK 57 Query: 62 NGKYSAENL 70 A N+ Sbjct: 58 G--PQAVNI 64 >gi|323483950|ref|ZP_08089323.1| hypothetical protein HMPREF9474_01072 [Clostridium symbiosum WAL-14163] gi|323693454|ref|ZP_08107665.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14673] gi|323402666|gb|EGA94991.1| hypothetical protein HMPREF9474_01072 [Clostridium symbiosum WAL-14163] gi|323502509|gb|EGB18360.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14673] Length = 66 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KG+GFI E+G+D+F+H S +A G +L +GQ VTYD Q + Sbjct: 1 MNKGTVKWFNSQKGFGFIC----GENGEDIFVHFSGLAMDGYKSLEDGQEVTYDIAQGNR 56 Query: 62 NGKYSAENLKL 72 A N+ + Sbjct: 57 G--LQAVNVSV 65 >gi|320109064|ref|YP_004184654.1| cold-shock DNA-binding domain-containing protein [Terriglobus saanensis SP1PR4] gi|319927585|gb|ADV84660.1| cold-shock DNA-binding domain protein [Terriglobus saanensis SP1PR4] Length = 67 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GF++ + +G+DVF+H +A+ + G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFLSRD----NGEDVFVHHTAIQAQGFRSLQEGQRVEFNVVKGPK 56 Query: 62 NGKYSAENLKLV 73 + AEN++ V Sbjct: 57 G--WQAENVRAV 66 >gi|260467130|ref|ZP_05813309.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|259029142|gb|EEW30439.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] Length = 68 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K+YN KG+GFI P + G DVF+H SA+ AG L EGQ + ++ + DA Sbjct: 1 MNTGTVKFYNGQKGFGFIQP---ADGGKDVFVHVSALERAGFPGLAEGQKLQFEL-ERDA 56 Query: 62 NGKYSAENLKLV 73 G+ SA NL+L+ Sbjct: 57 KGRESAANLQLI 68 >gi|116511521|ref|YP_808737.1| cold-shock DNA-binding protein family protein [Lactococcus lactis subsp. cremoris SK11] gi|125624635|ref|YP_001033118.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris MG1363] gi|2370256|emb|CAA71254.1| cold shock protein [Lactococcus lactis] gi|3850773|emb|CAA76695.1| cold shock protein B [Lactococcus lactis subsp. cremoris MG1363] gi|116107175|gb|ABJ72315.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp. cremoris SK11] gi|124493443|emb|CAL98417.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris MG1363] gi|300071426|gb|ADJ60826.1| cold shock-like protein cspB [Lactococcus lactis subsp. cremoris NZ9000] Length = 66 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NPDKG+GFIT +E G DVF H S + ++G L EGQ VT+D Sbjct: 1 MTKGTVKWFNPDKGFGFIT----SEDGQDVFAHFSQIQTSGFKTLDEGQKVTFDVEAGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQAVNIE 64 >gi|224542054|ref|ZP_03682593.1| hypothetical protein CATMIT_01228 [Catenibacterium mitsuokai DSM 15897] gi|224524987|gb|EEF94092.1| hypothetical protein CATMIT_01228 [Catenibacterium mitsuokai DSM 15897] Length = 67 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+ +KGYGFIT EG + D+F+H SA+ + G L EGQ V +D V+ D Sbjct: 2 TGKVKWFKAEKGYGFITVEGQS---KDIFVHFSAINADGYKTLEEGQTVEFDVVEGDRG- 57 Query: 64 KYSAENLKLVP 74 A N+ +V Sbjct: 58 -PQAANVTVVE 67 >gi|323486640|ref|ZP_08091961.1| hypothetical protein HMPREF9474_03712 [Clostridium symbiosum WAL-14163] gi|323692214|ref|ZP_08106457.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14673] gi|323400021|gb|EGA92398.1| hypothetical protein HMPREF9474_03712 [Clostridium symbiosum WAL-14163] gi|323503788|gb|EGB19607.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14673] Length = 66 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGFI S E G+DVF+H S + G +L EG V ++ V N A Sbjct: 1 MNKGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLEEGAQVEFEVV-NGA 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 KGPQATNVVKL 66 >gi|170736784|ref|YP_001778044.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169818972|gb|ACA93554.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia MC0-3] Length = 67 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFITP+ GDD+F H S + G L EGQ V+Y+ ++ Sbjct: 1 MDTGTVKWFNDNKGFGFITPDS---GGDDLFAHFSEIRGDGFKTLAEGQKVSYE-TKHGP 56 Query: 62 NGKYSAENL 70 G ++ + Sbjct: 57 KGLQASNIV 65 >gi|168334103|ref|ZP_02692316.1| cold shock protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 65 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+NP+KG+GFI E GDDVF+H +A+ S G L EGQ V ++ + + Sbjct: 2 TGKVKWFNPEKGFGFIERE----DGDDVFVHFTAIQSEGFKTLEEGQEVEFEITEGNRG- 56 Query: 64 KYSAENLK 71 A N+ Sbjct: 57 -PQASNVT 63 >gi|251789584|ref|YP_003004305.1| cold shock-like protein CspC [Dickeya zeae Ech1591] gi|271500505|ref|YP_003333530.1| cold-shock DNA-binding domain-containing protein [Dickeya dadantii Ech586] gi|307131152|ref|YP_003883168.1| stress protein, member of the CspA-family [Dickeya dadantii 3937] gi|247538205|gb|ACT06826.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591] gi|270344060|gb|ACZ76825.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586] gi|306528681|gb|ADM98611.1| stress protein, member of the CspA-family [Dickeya dadantii 3937] Length = 69 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60 Query: 64 KYSAENLKL 72 + + L Sbjct: 61 PSAVNVVAL 69 >gi|218902814|ref|YP_002450648.1| cold shock protein CspB [Bacillus cereus AH820] gi|218536202|gb|ACK88600.1| cold shock protein CspB [Bacillus cereus AH820] Length = 65 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI E DDVF+H SA+ G L EGQ V++D + + G Sbjct: 2 QGKVKWFNNEKGFGFIE----MEGADDVFVHFSAIQGEGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 A +KL Sbjct: 57 PQVANVVKL 65 >gi|167034479|ref|YP_001669710.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida GB-1] gi|166860967|gb|ABY99374.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1] Length = 70 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ + Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAERGQ 59 Query: 62 NGKYSAEN 69 G +A+ Sbjct: 60 KGMQAAQV 67 >gi|257865337|ref|ZP_05644990.1| cold-shock protein [Enterococcus casseliflavus EC30] gi|257871667|ref|ZP_05651320.1| cold-shock protein [Enterococcus casseliflavus EC10] gi|325571430|ref|ZP_08146930.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] gi|257799271|gb|EEV28323.1| cold-shock protein [Enterococcus casseliflavus EC30] gi|257805831|gb|EEV34653.1| cold-shock protein [Enterococcus casseliflavus EC10] gi|325155906|gb|EGC68102.1| cold shock protein CspA [Enterococcus casseliflavus ATCC 12755] Length = 66 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ VT+D V+ Sbjct: 1 MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQGDGFKTLEEGQAVTFD-VEEGQ 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGLQATNIVK 65 >gi|148550775|ref|YP_001260214.1| cold-shock DNA-binding protein family protein [Sphingomonas wittichii RW1] gi|148503194|gb|ABQ71447.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1] Length = 71 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N DKGYGFI PE G D F+H SAV AG L + Q ++Y+ + D G Sbjct: 5 TGTVKFFNADKGYGFIAPET---GGQDAFVHISAVERAGFNTLNQNQRLSYEL-ETDRRG 60 Query: 64 KYSAENLK 71 K SA NL+ Sbjct: 61 KTSAVNLQ 68 >gi|94968551|ref|YP_590599.1| cold-shock DNA-binding protein family protein [Candidatus Koribacter versatilis Ellin345] gi|94550601|gb|ABF40525.1| cold-shock DNA-binding protein family [Candidatus Koribacter versatilis Ellin345] Length = 66 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI E G DVF+H SA++S G +L EG V ++ V+ G Sbjct: 2 KGTVKWFNNAKGYGFI----GREEGPDVFVHYSAISSEGYKSLAEGDAVEFEIVEGQ-KG 56 Query: 64 KYSAENLK 71 + +K Sbjct: 57 PQAGNVIK 64 >gi|89074299|ref|ZP_01160789.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|90578632|ref|ZP_01234442.1| putative Cold shock-like protein [Vibrio angustum S14] gi|89050003|gb|EAR55537.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|90439465|gb|EAS64646.1| putative Cold shock-like protein [Vibrio angustum S14] Length = 69 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+A G +L EGQ V++D Q G Sbjct: 5 TGIVKWFNDEKGFGFITQD---NGGADVFVHFRAIAGEGFKSLAEGQKVSFDVEQGQ-KG 60 Query: 64 KYSAENLKL 72 +A ++ Sbjct: 61 PQAANVERI 69 >gi|315500325|ref|YP_004089128.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] gi|315418337|gb|ADU14977.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] Length = 67 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+NP+KG+GFI P+ + G+DVF+H SA+ AG L EGQ + Y+ + Sbjct: 1 MAVGIVKWFNPNKGFGFIQPD---DGGNDVFVHISAIERAGWRMLVEGQKIAYEVQSD-- 55 Query: 62 NGKYSAENLK 71 GK +A NL+ Sbjct: 56 RGKAAAVNLQ 65 >gi|116249765|ref|YP_765603.1| putative cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841] gi|115254413|emb|CAK04052.1| putative cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841] Length = 68 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ KG GFI P+ + DVF+H SAV AG L +GQ + Y+ V++ Sbjct: 1 MATGTVKWFDATKGSGFIQPD---DGSIDVFVHISAVERAGRLGLNDGQKIAYELVKDRM 57 Query: 62 NGKYSAENLK 71 +GK SA+NL+ Sbjct: 58 SGKMSADNLQ 67 >gi|45441597|ref|NP_993136.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001] gi|51596736|ref|YP_070927.1| cold shock protein [Yersinia pseudotuberculosis IP 32953] gi|108807860|ref|YP_651776.1| cold shock protein [Yersinia pestis Antiqua] gi|108812136|ref|YP_647903.1| cold shock protein [Yersinia pestis Nepal516] gi|123442814|ref|YP_001008382.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145599073|ref|YP_001163149.1| cold shock protein [Yersinia pestis Pestoides F] gi|149366382|ref|ZP_01888416.1| cold shock protein [Yersinia pestis CA88-4125] gi|165925512|ref|ZP_02221344.1| conserved domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938445|ref|ZP_02227002.1| conserved domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008118|ref|ZP_02229016.1| conserved domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166210711|ref|ZP_02236746.1| conserved domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167422600|ref|ZP_02314353.1| conserved domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426330|ref|ZP_02318083.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466596|ref|ZP_02331300.1| cold shock protein [Yersinia pestis FV-1] gi|170023981|ref|YP_001720486.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|186895799|ref|YP_001872911.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|218928790|ref|YP_002346665.1| cold shock protein [Yersinia pestis CO92] gi|229841646|ref|ZP_04461804.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843763|ref|ZP_04463906.1| cold shock protein [Yersinia pestis biovar Orientalis str. India 195] gi|229894506|ref|ZP_04509688.1| cold shock protein [Yersinia pestis Pestoides A] gi|229902455|ref|ZP_04517574.1| cold shock protein [Yersinia pestis Nepal516] gi|257168075|ref|YP_003169743.1| cold shock protein [Yersinia pestis KIM 10] gi|270490364|ref|ZP_06207438.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|284988615|ref|YP_003422336.1| cold shock protein [Yersinia pseudotuberculosis IP 31758] gi|332161292|ref|YP_004297869.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|45436458|gb|AAS62013.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001] gi|51590018|emb|CAH21652.1| cold shock protein [Yersinia pseudotuberculosis IP 32953] gi|108775784|gb|ABG18303.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108779773|gb|ABG13831.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] gi|115347401|emb|CAL20300.1| cold shock protein [Yersinia pestis CO92] gi|122089775|emb|CAL12628.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145210769|gb|ABP40176.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|149290756|gb|EDM40831.1| cold shock protein [Yersinia pestis CA88-4125] gi|165913560|gb|EDR32180.1| conserved domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922621|gb|EDR39772.1| conserved domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992500|gb|EDR44801.1| conserved domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207891|gb|EDR52371.1| conserved domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166958447|gb|EDR55468.1| conserved domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167054685|gb|EDR64489.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750515|gb|ACA68033.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186698825|gb|ACC89454.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|229680501|gb|EEO76598.1| cold shock protein [Yersinia pestis Nepal516] gi|229689371|gb|EEO81434.1| cold shock protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694109|gb|EEO84157.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703525|gb|EEO90542.1| cold shock protein [Yersinia pestis Pestoides A] gi|270338868|gb|EFA49645.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|318605204|emb|CBY26702.1| cold shock protein CspA [Yersinia enterocolitica subsp. palearctica Y11] gi|320014803|gb|ADV98374.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin 35] gi|325665522|gb|ADZ42166.1| cold shock-like protein CspC2 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860359|emb|CBX70670.1| cold shock-like protein cspC [Yersinia enterocolitica W22703] Length = 70 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + +N A Sbjct: 4 MMKGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQNVQFSI-ENGA 59 Query: 62 NGKYSAENLKL 72 G +A + Sbjct: 60 KGPSAANVTAI 70 >gi|297563398|ref|YP_003682372.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847846|gb|ADH69866.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 67 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S + + G L EGQ V +D V Sbjct: 1 MATGTVKWFNGEKGFGFIEQDG---GGPDVFAHYSNIQATGYRELAEGQAVQFDAVAGAK 57 Query: 62 NGKYSAENLKLV 73 AEN+ LV Sbjct: 58 G--PQAENITLV 67 >gi|222054676|ref|YP_002537038.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] gi|221563965|gb|ACM19937.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] Length = 66 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI E +G+DVF+H S++ G +L EGQ VT+D +Q A Sbjct: 1 MAKGVVKWFNDAKGFGFIEQE----NGEDVFVHFSSIQGDGFKSLAEGQAVTFDVIQG-A 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 KGPQAANV 63 >gi|284103679|ref|ZP_06386113.1| cold shock protein [Candidatus Poribacteria sp. WGA-A3] gi|283830241|gb|EFC34486.1| cold shock protein [Candidatus Poribacteria sp. WGA-A3] Length = 76 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI EG DVF+H SA+ G L EG+ V +D V+ A Sbjct: 4 RKSGTVKWFNDRKGFGFIRVEGE----QDVFVHYSALQGEGFKTLKEGEPVEFDLVEG-A 58 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 59 KGPQAANVVK 68 >gi|254254112|ref|ZP_04947429.1| Cold shock protein [Burkholderia dolosa AUO158] gi|124898757|gb|EAY70600.1| Cold shock protein [Burkholderia dolosa AUO158] Length = 83 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+N KG+GFI+P+ GDD+F H S + G L E Q V+Y+ + Sbjct: 17 VDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLAENQKVSYEVKRGPK 73 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 74 G--LQASNITPL 83 >gi|90410344|ref|ZP_01218360.1| Putative cold shock-like protein cspG [Photobacterium profundum 3TCK] gi|90328585|gb|EAS44869.1| Putative cold shock-like protein cspG [Photobacterium profundum 3TCK] Length = 69 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT + G DVF+H A+ G L EGQ V+Y+ Q Sbjct: 5 TGTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLAEGQKVSYETEQGPKG- 60 Query: 64 KYSAENLKLV 73 A N++ + Sbjct: 61 -LQAANVEAI 69 >gi|291615935|ref|YP_003518677.1| CspB [Pantoea ananatis LMG 20103] gi|291150965|gb|ADD75549.1| CspB [Pantoea ananatis LMG 20103] gi|327396192|dbj|BAK13614.1| cold shock-like protein CspB [Pantoea ananatis AJ13355] Length = 79 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + DVF+H SA+ S+ L EGQ V + +N G Sbjct: 15 TGLVKWFNADKGFGFISP---QDGSKDVFVHFSAIQSSDFKTLDEGQKVEFSI-ENGPKG 70 Query: 64 KYSAENLKL 72 + + L Sbjct: 71 PSAGNVVAL 79 >gi|256822338|ref|YP_003146301.1| cold-shock DNA-binding domain-containing protein [Kangiella koreensis DSM 16069] gi|256795877|gb|ACV26533.1| cold-shock DNA-binding domain protein [Kangiella koreensis DSM 16069] Length = 68 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E G+DVF+H A+ G L EGQ V +D Q G Sbjct: 5 TGTVKWFNESKGFGFIEQEQ----GEDVFVHFRAIQGDGFKTLAEGQRVEFDIEQG-PKG 59 Query: 64 KYSAENLKL 72 +A K+ Sbjct: 60 AQAANVTKV 68 >gi|15600954|ref|NP_232584.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586738|ref|ZP_01676521.1| cold shock DNA-binding domain protein [Vibrio cholerae 2740-80] gi|121728217|ref|ZP_01681251.1| cold shock DNA-binding domain protein [Vibrio cholerae V52] gi|147671812|ref|YP_001215928.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae O395] gi|153214423|ref|ZP_01949394.1| cold shock DNA-binding domain protein [Vibrio cholerae 1587] gi|153802359|ref|ZP_01956945.1| cold shock DNA-binding domain protein [Vibrio cholerae MZO-3] gi|153816780|ref|ZP_01969447.1| cold shock DNA-binding domain protein [Vibrio cholerae NCTC 8457] gi|153825010|ref|ZP_01977677.1| conserved domain protein [Vibrio cholerae MZO-2] gi|153830508|ref|ZP_01983175.1| cold shock DNA-binding domain protein [Vibrio cholerae 623-39] gi|227811808|ref|YP_002811818.1| cold shock DNA-binding domain protein [Vibrio cholerae M66-2] gi|229506650|ref|ZP_04396159.1| cold shock protein CspE [Vibrio cholerae BX 330286] gi|229510552|ref|ZP_04400032.1| cold shock protein CspE [Vibrio cholerae B33] gi|229514684|ref|ZP_04404145.1| cold shock protein CspE [Vibrio cholerae TMA 21] gi|229517316|ref|ZP_04406761.1| cold shock protein CspE [Vibrio cholerae RC9] gi|229522853|ref|ZP_04412267.1| cold shock protein CspE [Vibrio cholerae TM 11079-80] gi|229526190|ref|ZP_04415594.1| cold shock protein CspE [Vibrio cholerae bv. albensis VL426] gi|229527836|ref|ZP_04417227.1| cold shock protein CspE [Vibrio cholerae 12129(1)] gi|229605127|ref|YP_002875831.1| cold shock protein CspE [Vibrio cholerae MJ-1236] gi|254225227|ref|ZP_04918840.1| cold shock DNA-binding domain protein [Vibrio cholerae V51] gi|254286678|ref|ZP_04961633.1| cold shock DNA-binding domain protein [Vibrio cholerae AM-19226] gi|254850617|ref|ZP_05239967.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae MO10] gi|255746005|ref|ZP_05419952.1| cold shock protein CspE [Vibrio cholera CIRS 101] gi|258620062|ref|ZP_05715101.1| cold shock DNA-binding domain protein [Vibrio mimicus VM573] gi|258624862|ref|ZP_05719790.1| cold shock DNA-binding domain protein [Vibrio mimicus VM603] gi|261212646|ref|ZP_05926930.1| cold shock protein CspE [Vibrio sp. RC341] gi|262162157|ref|ZP_06031172.1| cold shock protein CspE [Vibrio cholerae INDRE 91/1] gi|262164800|ref|ZP_06032538.1| cold shock protein CspE [Vibrio mimicus VM223] gi|262167820|ref|ZP_06035521.1| cold shock protein CspE [Vibrio cholerae RC27] gi|262172987|ref|ZP_06040664.1| cold shock protein CspE [Vibrio mimicus MB-451] gi|262403363|ref|ZP_06079923.1| cold shock protein CspE [Vibrio sp. RC586] gi|297579689|ref|ZP_06941616.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae RC385] gi|298500039|ref|ZP_07009845.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae MAK 757] gi|9657576|gb|AAF96097.1| cold shock DNA-binding domain protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549035|gb|EAX59072.1| cold shock DNA-binding domain protein [Vibrio cholerae 2740-80] gi|121629540|gb|EAX61964.1| cold shock DNA-binding domain protein [Vibrio cholerae V52] gi|124115372|gb|EAY34192.1| cold shock DNA-binding domain protein [Vibrio cholerae 1587] gi|124122078|gb|EAY40821.1| cold shock DNA-binding domain protein [Vibrio cholerae MZO-3] gi|125622326|gb|EAZ50647.1| cold shock DNA-binding domain protein [Vibrio cholerae V51] gi|126512583|gb|EAZ75177.1| cold shock DNA-binding domain protein [Vibrio cholerae NCTC 8457] gi|146314195|gb|ABQ18735.1| cold shock DNA-binding domain protein [Vibrio cholerae O395] gi|148874003|gb|EDL72138.1| cold shock DNA-binding domain protein [Vibrio cholerae 623-39] gi|149741335|gb|EDM55369.1| conserved domain protein [Vibrio cholerae MZO-2] gi|150423262|gb|EDN15208.1| cold shock DNA-binding domain protein [Vibrio cholerae AM-19226] gi|227010950|gb|ACP07161.1| cold shock DNA-binding domain protein [Vibrio cholerae M66-2] gi|227014809|gb|ACP11018.1| cold shock DNA-binding domain protein [Vibrio cholerae O395] gi|229334198|gb|EEN99683.1| cold shock protein CspE [Vibrio cholerae 12129(1)] gi|229336348|gb|EEO01366.1| cold shock protein CspE [Vibrio cholerae bv. albensis VL426] gi|229340070|gb|EEO05078.1| cold shock protein CspE [Vibrio cholerae TM 11079-80] gi|229345352|gb|EEO10325.1| cold shock protein CspE [Vibrio cholerae RC9] gi|229348664|gb|EEO13622.1| cold shock protein CspE [Vibrio cholerae TMA 21] gi|229352997|gb|EEO17937.1| cold shock protein CspE [Vibrio cholerae B33] gi|229357001|gb|EEO21919.1| cold shock protein CspE [Vibrio cholerae BX 330286] gi|229371613|gb|ACQ62035.1| cold shock protein CspE [Vibrio cholerae MJ-1236] gi|254846322|gb|EET24736.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae MO10] gi|255735759|gb|EET91157.1| cold shock protein CspE [Vibrio cholera CIRS 101] gi|258582860|gb|EEW07681.1| cold shock DNA-binding domain protein [Vibrio mimicus VM603] gi|258587420|gb|EEW12130.1| cold shock DNA-binding domain protein [Vibrio mimicus VM573] gi|260837711|gb|EEX64388.1| cold shock protein CspE [Vibrio sp. RC341] gi|261890345|gb|EEY36332.1| cold shock protein CspE [Vibrio mimicus MB-451] gi|262023728|gb|EEY42428.1| cold shock protein CspE [Vibrio cholerae RC27] gi|262027180|gb|EEY45847.1| cold shock protein CspE [Vibrio mimicus VM223] gi|262028232|gb|EEY46890.1| cold shock protein CspE [Vibrio cholerae INDRE 91/1] gi|262350862|gb|EEY99995.1| cold shock protein CspE [Vibrio sp. RC586] gi|297535335|gb|EFH74169.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae RC385] gi|297542020|gb|EFH78071.1| cold shock DNA-binding domain-containing protein [Vibrio cholerae MAK 757] gi|327485405|gb|AEA79811.1| Cold shock protein CspE [Vibrio cholerae LMA3894-4] Length = 69 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V + Q Sbjct: 6 TGTVKWFNETKGFGFI----KQENGPDVFAHFSAIQGDGFRTLAEGQKVEFVITQGQKG- 60 Query: 64 KYSAENLKLV 73 AE++K++ Sbjct: 61 -PQAESIKVL 69 >gi|310829807|ref|YP_003962164.1| cold-shock protein [Eubacterium limosum KIST612] gi|308741541|gb|ADO39201.1| cold-shock protein [Eubacterium limosum KIST612] Length = 66 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFI+ E GDDVF+H S++ G L EG V++D Q Sbjct: 1 MNNGTVKWFNSDKGFGFISRE----EGDDVFVHFSSIMGGGFKTLNEGDKVSFDIEQGAR 56 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 57 G--LQASNVSVI 66 >gi|302543183|ref|ZP_07295525.1| conserved domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302460801|gb|EFL23894.1| conserved domain protein [Streptomyces himastatinicus ATCC 53653] Length = 67 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGADVFAHYSNIATQGFRELQEGQKVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|152999996|ref|YP_001365677.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS185] gi|160874617|ref|YP_001553933.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS195] gi|217974041|ref|YP_002358792.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS223] gi|304409581|ref|ZP_07391201.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183] gi|307303939|ref|ZP_07583692.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175] gi|151364614|gb|ABS07614.1| putative cold-shock DNA-binding domain protein [Shewanella baltica OS185] gi|160860139|gb|ABX48673.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195] gi|217499176|gb|ACK47369.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223] gi|304352099|gb|EFM16497.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183] gi|306912837|gb|EFN43260.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175] gi|315266858|gb|ADT93711.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678] Length = 69 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V++D Q G Sbjct: 5 TGVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQGQ-KG 60 Query: 64 KYSAENL 70 +A + Sbjct: 61 PQAANVV 67 >gi|260768159|ref|ZP_05877093.1| cold shock protein CspD [Vibrio furnissii CIP 102972] gi|260616189|gb|EEX41374.1| cold shock protein CspD [Vibrio furnissii CIP 102972] gi|315179859|gb|ADT86773.1| cold shock-like protein CspD [Vibrio furnissii NCTC 11218] Length = 73 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG D+F H S + G L GQ V+Y+ Q Sbjct: 1 MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIKMDGYRTLKAGQQVSYEVEQG-P 56 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 57 KGYHASSVVPI 67 >gi|302523728|ref|ZP_07276070.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] gi|302432623|gb|EFL04439.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] Length = 67 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFITP+ G DVF+H S + G L E V ++ Q Sbjct: 1 MTEGTVKWFNSEKGFGFITPD---NGGGDVFVHYSEIQGNGFRTLEENARVQFEIGQGQK 57 Query: 62 NGKYSAENLKLV 73 A ++ L+ Sbjct: 58 G--PQATSVSLI 67 >gi|224033259|gb|ACN35705.1| unknown [Zea mays] Length = 110 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 RG++KW+N KG+GFI+PE + +D+F+H+S++ S G +L EG+ V + + Sbjct: 6 RQRGTVKWFNDTKGFGFISPE---DGSEDLFVHQSSIKSEGFRSLAEGEEVEFSVSEGG 61 >gi|104781331|ref|YP_607829.1| cold-shock protein CspD [Pseudomonas entomophila L48] gi|95110318|emb|CAK15025.1| cold-shock protein CspD [Pseudomonas entomophila L48] Length = 87 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI EG E D+F H SA+ G L GQ VT++ +Q Sbjct: 1 MASGKVKWFNNAKGYGFINEEGKDE---DLFAHYSAIQMDGYKTLKAGQAVTFELLQG-P 56 Query: 62 NGKYSAENLK 71 GK+ A N++ Sbjct: 57 KGKH-AVNIQ 65 >gi|2493762|sp|Q45097|CSPB_BACCE RecName: Full=Cold shock-like protein CspB gi|1405472|emb|CAA63608.1| CspB protein [Bacillus cereus] Length = 65 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFI E +DVF+H SA+ S G L EGQ V++D + + G Sbjct: 2 NGKVKWFNNEKGFGFIE----MEGSEDVFVHFSAIQSDGYKALEEGQEVSFDITEGN-RG 56 Query: 64 KYSAENLKL 72 +A KL Sbjct: 57 PQAANVAKL 65 >gi|229031192|ref|ZP_04187201.1| Cold shock protein cspB [Bacillus cereus AH1271] gi|229075433|ref|ZP_04208422.1| Cold shock protein cspB [Bacillus cereus Rock4-18] gi|229097982|ref|ZP_04228932.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|229104067|ref|ZP_04234742.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|229117001|ref|ZP_04246383.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|228666405|gb|EEL21865.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|228679347|gb|EEL33549.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|228685419|gb|EEL39347.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|228707682|gb|EEL59866.1| Cold shock protein cspB [Bacillus cereus Rock4-18] gi|228730119|gb|EEL81090.1| Cold shock protein cspB [Bacillus cereus AH1271] Length = 66 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGDGFKTLEEGQEVTFEVEQGNR 56 Query: 62 NGKYSAENLK 71 + + N K Sbjct: 57 GPQATNVNKK 66 >gi|183396658|dbj|BAG28257.1| hypothetical protein [Desulfotignum balticum] Length = 67 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E + G DVF+H S + + G +L EG V++D + Sbjct: 1 MANGTVKWFNDAKGFGFIEQE---DGGKDVFVHHSGINAMGFKSLNEGDRVSFDISEGQR 57 Query: 62 NGKYSAENLKLV 73 +A N+ +V Sbjct: 58 G--PAATNVTVV 67 >gi|22124144|ref|NP_667567.1| cold shock-like protein [Yersinia pestis KIM 10] gi|45443633|ref|NP_995172.1| cold shock-like protein [Yersinia pestis biovar Microtus str. 91001] gi|21956899|gb|AAM83818.1|AE013622_7 cold shock-like protein [Yersinia pestis KIM 10] gi|45438503|gb|AAS64049.1| cold shock-like protein [Yersinia pestis biovar Microtus str. 91001] Length = 95 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + +N A G Sbjct: 31 TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 86 Query: 64 KYSAENLKL 72 + + L Sbjct: 87 PAAVNVIAL 95 >gi|89093057|ref|ZP_01166008.1| Cold shock protein [Oceanospirillum sp. MED92] gi|89082707|gb|EAR61928.1| Cold shock protein [Oceanospirillum sp. MED92] Length = 69 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI +SG DVF H SA+A G +L EGQ V + Q Sbjct: 6 TGTVKWFNDEKGFGFIEQ----QSGPDVFAHFSAIAGDGFKSLQEGQQVEFTVAQGQKG- 60 Query: 64 KYSAENLKLV 73 AEN++ + Sbjct: 61 -PQAENIRPL 69 >gi|329941300|ref|ZP_08290579.1| cold-shock protein [Streptomyces griseoaurantiacus M045] gi|329299831|gb|EGG43730.1| cold-shock protein [Streptomyces griseoaurantiacus M045] Length = 67 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELLEGQKVSFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|302529053|ref|ZP_07281395.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] gi|302437948|gb|EFL09764.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] Length = 67 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+P+ + DVF+H S + G +L E V ++ Q Sbjct: 1 MTQGTVKWFNAEKGFGFISPD---DGSADVFVHYSEIQGNGFRSLDENARVEFEVGQGQK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|254495825|ref|ZP_05108737.1| cold shock protein CspD [Legionella drancourtii LLAP12] gi|254354982|gb|EET13605.1| cold shock protein CspD [Legionella drancourtii LLAP12] Length = 76 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N KG+GFI PE + GDD+F+H SA+ +G L GQ+VTYD Q D Sbjct: 1 MARGEVKWFNNAKGWGFIIPE---QGGDDIFVHFSAIHGSGYKTLVPGQMVTYDVGQGD- 56 Query: 62 NGKYSAENL 70 G ++A L Sbjct: 57 KGLHAANVL 65 >gi|312881480|ref|ZP_07741272.1| cold shock-like protein CspD [Vibrio caribbenthicus ATCC BAA-2122] gi|309370846|gb|EFP98306.1| cold shock-like protein CspD [Vibrio caribbenthicus ATCC BAA-2122] Length = 73 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG DVF H S + G L GQ V ++ + Sbjct: 1 MATGTVKWFNNAKGFGFICPEGED---GDVFAHYSTIQMDGYRTLKAGQQVNFEVEEGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|163941162|ref|YP_001646046.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229012730|ref|ZP_04169900.1| Cold shock protein cspB [Bacillus mycoides DSM 2048] gi|229018744|ref|ZP_04175594.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|229024986|ref|ZP_04181415.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|229061117|ref|ZP_04198468.1| Cold shock protein cspB [Bacillus cereus AH603] gi|229134360|ref|ZP_04263173.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196] gi|229168275|ref|ZP_04296000.1| Cold shock protein cspB [Bacillus cereus AH621] gi|229174199|ref|ZP_04301734.1| Cold shock protein cspB [Bacillus cereus MM3] gi|163863359|gb|ABY44418.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] gi|228609320|gb|EEK66607.1| Cold shock protein cspB [Bacillus cereus MM3] gi|228615101|gb|EEK72201.1| Cold shock protein cspB [Bacillus cereus AH621] gi|228648981|gb|EEL05003.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196] gi|228718200|gb|EEL69838.1| Cold shock protein cspB [Bacillus cereus AH603] gi|228736321|gb|EEL86887.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|228742550|gb|EEL92700.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|228748565|gb|EEL98420.1| Cold shock protein cspB [Bacillus mycoides DSM 2048] Length = 66 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ G +L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNAEKGFGFIEVE----GGEDVFVHFSAIQGDGFKSLEEGQEVTFEVEQGNR 56 Query: 62 NGKYSAENLK 71 + + N K Sbjct: 57 GPQATNVNKK 66 >gi|37525539|ref|NP_928883.1| cold shock protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784967|emb|CAE13885.1| cold shock protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 73 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G+D+F H S + G L GQ V + V Sbjct: 1 METGTVKWFNNAKGFGFICP---ASGGEDIFAHYSTIQMDGYRTLKAGQKVNFS-VHLGP 56 Query: 62 NGKYSAENLKL 72 G +++ + L Sbjct: 57 KGNHASIIVPL 67 >gi|88799572|ref|ZP_01115148.1| Cold shock protein [Reinekea sp. MED297] gi|88777657|gb|EAR08856.1| Cold shock protein [Reinekea sp. MED297] Length = 69 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H SA+ G L EGQ VT+ Q Sbjct: 6 TGTVKWFNETKGFGFIEQE----NGPDVFAHFSAIQGTGFKTLAEGQKVTFTITQGQKG- 60 Query: 64 KYSAENLKLV 73 AEN++ V Sbjct: 61 -PQAENIEKV 69 >gi|283785560|ref|YP_003365425.1| cold shock-like protein CspC [Citrobacter rodentium ICC168] gi|282949014|emb|CBG88617.1| cold shock-like protein CspC [Citrobacter rodentium ICC168] Length = 71 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 7 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 62 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 63 P-AAVNVTAI 71 >gi|170721149|ref|YP_001748837.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida W619] gi|169759152|gb|ACA72468.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619] Length = 70 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G++KW+N +KGYGFITP G GDD+F+H A+ S G +L EGQ V++ + Sbjct: 4 RQQGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAEKGQ 59 Query: 62 NGKYSAEN 69 G +A+ Sbjct: 60 KGMQAAQV 67 >gi|260597574|ref|YP_003210145.1| Cold shock-like protein cspB [Cronobacter turicensis z3032] gi|260216751|emb|CBA30171.1| Cold shock-like protein cspB [Cronobacter turicensis z3032] Length = 70 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI P T+ DVF+H SA+ S LTEGQ V + V+N A G Sbjct: 6 NGSVKWFNADKGFGFIAP---TDGSKDVFVHFSAIQSDNFRTLTEGQQVEFS-VENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVVAL 70 >gi|297563005|ref|YP_003681979.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847453|gb|ADH69473.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 67 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG DVF+H SA++ G NL E Q VT+D +Q Sbjct: 1 MAQGTVKWFNSEKGFGFIAVEGGQ---PDVFVHYSAISGTGFRNLEEDQKVTFDIIQG-P 56 Query: 62 NGKYSAEN 69 G +A+ Sbjct: 57 KGPQAADV 64 >gi|237727875|ref|ZP_04558356.1| major cold shock protein CSPA2 [Citrobacter sp. 30_2] gi|226910432|gb|EEH96350.1| major cold shock protein CSPA2 [Citrobacter sp. 30_2] Length = 70 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP + DVF+H SA+ S L EGQ V + V+N A G Sbjct: 6 TGLVKWFNSDKGFGFITP---QDGSKDVFVHFSAIQSNDFKTLDEGQKVEFS-VENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVVAL 70 >gi|254381082|ref|ZP_04996447.1| cold shock protein [Streptomyces sp. Mg1] gi|194339992|gb|EDX20958.1| cold shock protein [Streptomyces sp. Mg1] Length = 67 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI +G GDDVF H S +A+ G L EGQ VT+D Q Sbjct: 1 MATGTVKWFNAAKGFGFIEQDG---GGDDVFAHFSNIAAQGFRELLEGQKVTFDIAQGQK 57 Query: 62 NGKYSAENLKL 72 +AEN+ L Sbjct: 58 G--PTAENIVL 66 >gi|158523075|ref|YP_001530945.1| cold-shock DNA-binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511901|gb|ABW68868.1| cold-shock DNA-binding domain protein [Desulfococcus oleovorans Hxd3] Length = 66 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI + +G DVF+H SA+ ++G L EG VT+D V + Sbjct: 1 MADGIVKWFNDSKGFGFIEQD----NGPDVFVHHSAINASGFKTLNEGDRVTFDIV-DGK 55 Query: 62 NGKYSAENLKLV 73 G +A N+ +V Sbjct: 56 KGPAAA-NVTVV 66 >gi|322832644|ref|YP_004212671.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|321167845|gb|ADW73544.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] Length = 69 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + +N A Sbjct: 3 MMKGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQNVQFTI-ENGA 58 Query: 62 NGKYSAENLKL 72 G +A + Sbjct: 59 KGPSAANVTAI 69 >gi|253997134|ref|YP_003049198.1| cold-shock DNA-binding domain-containing protein [Methylotenera mobilis JLW8] gi|253983813|gb|ACT48671.1| cold-shock DNA-binding domain protein [Methylotenera mobilis JLW8] Length = 67 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ GDD+F H SA+ +G +L E + V++D + Sbjct: 1 MATGLVKWFNDSKGFGFITPDA---GGDDLFAHFSAINDSGYKSLKENERVSFDVT-DGP 56 Query: 62 NGKYSAENLKLV 73 GK A N++ + Sbjct: 57 KGKQ-ASNIQKI 67 >gi|238919617|ref|YP_002933132.1| cold shock-like protein CspC [Edwardsiella ictaluri 93-146] gi|269138905|ref|YP_003295606.1| cold shock protein [Edwardsiella tarda EIB202] gi|294636002|ref|ZP_06714441.1| conserved domain protein [Edwardsiella tarda ATCC 23685] gi|317492183|ref|ZP_07950613.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|238869186|gb|ACR68897.1| conserved domain protein [Edwardsiella ictaluri 93-146] gi|267984566|gb|ACY84395.1| cold shock protein [Edwardsiella tarda EIB202] gi|291090679|gb|EFE23240.1| conserved domain protein [Edwardsiella tarda ATCC 23685] gi|304558891|gb|ADM41555.1| Cold shock protein CspC [Edwardsiella tarda FL6-60] gi|316919888|gb|EFV41217.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 69 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNEAKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQHVEFEI-QDGQKG 60 Query: 64 KYSAENLKLV 73 SA N+ + Sbjct: 61 P-SAVNVTAI 69 >gi|260855295|ref|YP_003229186.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368] gi|257753944|dbj|BAI25446.1| predicted cold shock protein [Escherichia coli O26:H11 str. 11368] gi|323156712|gb|EFZ42850.1| cold shock-like protein cspG [Escherichia coli EPECa14] Length = 71 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + DVF+H SA+ + L EGQ VT+ + A G Sbjct: 6 TGLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSI-ERGAKG 61 Query: 64 KYSAENL 70 +A + Sbjct: 62 PAAANVI 68 >gi|89096927|ref|ZP_01169818.1| cold shock protein [Bacillus sp. NRRL B-14911] gi|89088307|gb|EAR67417.1| cold shock protein [Bacillus sp. NRRL B-14911] Length = 66 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI T G DVF+H SA+ G L EGQ V++D + Sbjct: 1 MATGKVKWFNAEKGFGFIE----TSEGQDVFVHFSAIQGEGFKTLDEGQEVSFDIEEGQ- 55 Query: 62 NGKYSAENLK 71 G ++ +K Sbjct: 56 RGPQASNVVK 65 >gi|254820163|ref|ZP_05225164.1| hypothetical protein MintA_09561 [Mycobacterium intracellulare ATCC 13950] Length = 67 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI P+G DVF+H S + +G +L E Q V ++ Q Sbjct: 1 MTQGTVKWFNSDKGFGFIAPDGGE---KDVFVHHSEIQESGFRSLEENQRVQFEITQG-P 56 Query: 62 NGKYSAENLKL 72 G + L Sbjct: 57 KGPQAVGVTAL 67 >gi|300786398|ref|YP_003766689.1| cold shock protein CspA [Amycolatopsis mediterranei U32] gi|299795912|gb|ADJ46287.1| cold shock protein CspA [Amycolatopsis mediterranei U32] Length = 67 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +GS+KW+N +KG+GFI +G G DVF+H S + +G +L EGQ V ++ Q Sbjct: 1 MAQGSVKWFNGEKGFGFIAQDG---GGPDVFVHYSEIQGSGFKSLDEGQRVEFEIGQGQK 57 Query: 62 NGKYSAENLKLV 73 A+ + ++ Sbjct: 58 G--PQAQRVSVI 67 >gi|218709066|ref|YP_002416687.1| Cold shock-like protein cspD [Vibrio splendidus LGP32] gi|218322085|emb|CAV18171.1| Cold shock-like protein cspD [Vibrio splendidus LGP32] Length = 76 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG D+F H S + G L GQ V Y+ V++ Sbjct: 4 MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMEGYRTLKAGQQVDYE-VESGP 59 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 60 KGSHASSVVPV 70 >gi|160878713|ref|YP_001557681.1| cold-shock DNA-binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160427379|gb|ABX40942.1| cold-shock DNA-binding domain protein [Clostridium phytofermentans ISDg] Length = 66 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KG+GFI S E G+DVF+H S + G +L EGQ V ++ VQ A Sbjct: 1 MNKGTVKWFNNQKGFGFI----SDEQGNDVFVHYSGLNMDGFKSLEEGQEVAFEVVQG-A 55 Query: 62 NGKYSAENLKL 72 G + ++ Sbjct: 56 KGPQATNVTRI 66 >gi|20135600|gb|AAM09094.1| cold-shock protein CspD [Burkholderia multivorans] Length = 68 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|259908938|ref|YP_002649294.1| Cold shock protein [Erwinia pyrifoliae Ep1/96] gi|224964560|emb|CAX56073.1| Cold shock protein [Erwinia pyrifoliae Ep1/96] Length = 74 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KG+GFI P G GDD+F H S + G L GQ V +D Q Sbjct: 2 TGTVKWFNNAKGFGFICPVG---GGDDIFAHYSTIQMDGYRTLKAGQQVQFDVHQGPKG 57 >gi|212709456|ref|ZP_03317584.1| hypothetical protein PROVALCAL_00497 [Providencia alcalifaciens DSM 30120] gi|261344215|ref|ZP_05971859.1| conserved domain protein [Providencia rustigianii DSM 4541] gi|212687794|gb|EEB47322.1| hypothetical protein PROVALCAL_00497 [Providencia alcalifaciens DSM 30120] gi|282567812|gb|EFB73347.1| conserved domain protein [Providencia rustigianii DSM 4541] Length = 70 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + +N A G Sbjct: 6 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQQVEFTI-ENGAKG 61 Query: 64 KYSAENLKL 72 +A + Sbjct: 62 PAAANVTAI 70 >gi|163749964|ref|ZP_02157208.1| putative Cold shock-like protein [Shewanella benthica KT99] gi|161330238|gb|EDQ01219.1| putative Cold shock-like protein [Shewanella benthica KT99] Length = 70 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + G++KW+N DKG+GF+T + G DVF+H A+AS G L EGQ V+++ Q + Sbjct: 5 NTGTVKWFNEDKGFGFLTQD---NGGADVFVHFRAIASEGFKTLDEGQKVSFEVEQGE-K 60 Query: 63 GKYSAENLKL 72 G ++ + L Sbjct: 61 GLQASNVIAL 70 >gi|161520712|ref|YP_001584139.1| cold-shock DNA-binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189353104|ref|YP_001948731.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|221196347|ref|ZP_03569394.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans CGD2M] gi|221203021|ref|ZP_03576040.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans CGD2] gi|221209974|ref|ZP_03582955.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans CGD1] gi|160344762|gb|ABX17847.1| cold-shock DNA-binding domain protein [Burkholderia multivorans ATCC 17616] gi|189337126|dbj|BAG46195.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|221170662|gb|EEE03128.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans CGD1] gi|221176955|gb|EEE09383.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans CGD2] gi|221182901|gb|EEE15301.1| putative cold-shock' DNA-binding domain [Burkholderia multivorans CGD2M] Length = 67 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ GDD+F H S + G LT+ Q V+Y+ + Sbjct: 1 MDTGTVKWFNETKGFGFISPD---NGGDDLFAHFSEIRGTGFKTLTDNQKVSYEVKRGPK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--LQASNITPL 67 >gi|111017609|ref|YP_700581.1| cold shock protein [Rhodococcus jostii RHA1] gi|111025401|ref|YP_707821.1| CspA family cold-shock protein [Rhodococcus jostii RHA1] gi|110817139|gb|ABG92423.1| cold shock protein [Rhodococcus jostii RHA1] gi|110824380|gb|ABG99663.1| cold-shock protein, CspA family protein [Rhodococcus jostii RHA1] Length = 67 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI P+ + DVF+H S ++ +G +L E Q V ++ Q Sbjct: 1 MAQGIVKWFNGEKGFGFIAPD---DGTPDVFVHYSEISGSGFKSLDENQRVEFEVGQGQK 57 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 58 G--PQATNVRSV 67 >gi|284043353|ref|YP_003393693.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] gi|283947574|gb|ADB50318.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] Length = 67 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ DKG+GFITP+ + G D+F+H S ++ G +L EG V+Y+ Q D Sbjct: 1 MATGTVKWFSDDKGFGFITPD---DGGRDLFVHYSGISGDGYRSLPEGSKVSYEEEQGDK 57 Query: 62 NGKYSAENLKLV 73 K A N+ + Sbjct: 58 GPK--AVNVTKI 67 >gi|15889479|ref|NP_355160.1| cold shock protein [Agrobacterium tumefaciens str. C58] gi|325293560|ref|YP_004279424.1| cold shock protein [Agrobacterium sp. H13-3] gi|15157349|gb|AAK87945.1| cold shock protein [Agrobacterium tumefaciens str. C58] gi|325061413|gb|ADY65104.1| cold shock protein [Agrobacterium sp. H13-3] Length = 71 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI P+ G D+F+H SAV ++GL L+E Q V++D + Sbjct: 1 MAETGTVKFFNTDKGFGFIKPD---NGGADIFVHISAVQASGLSGLSENQKVSFDTEPDR 57 Query: 61 ANGKYSAENLKL 72 A NL++ Sbjct: 58 RGKGPKAVNLQI 69 >gi|254441253|ref|ZP_05054746.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter antarcticus 307] gi|198251331|gb|EDY75646.1| 'Cold-shock' DNA-binding domain, putative [Octadecabacter antarcticus 307] Length = 68 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG DVF+H SAV AGL L + Q VT+D ++ Sbjct: 1 MANGTVKWFNSTKGFGFIAPEG---GSKDVFVHISAVEQAGLTGLNDDQKVTFDI-ESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N+ L Sbjct: 57 DGRESAANIVL 67 >gi|158321201|ref|YP_001513708.1| cold-shock DNA-binding domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158141400|gb|ABW19712.1| cold-shock DNA-binding domain protein [Alkaliphilus oremlandii OhILAs] Length = 66 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI+ +G +DVF+H SA+ G L EGQ V ++ V + A Sbjct: 1 MKTGIVKWFNNEKGFGFISVQGE----EDVFVHFSAINGDGFKTLEEGQEVEFEVV-SGA 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 RGPQAANVSRI 66 >gi|304438239|ref|ZP_07398181.1| cold shock protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368846|gb|EFM22529.1| cold shock protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 72 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ DKGYGFI+ E GDDVF+H S++ G L+EGQ V +D V+ A G Sbjct: 8 TGKVKWFSADKGYGFISRE----DGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVEG-ARG 62 Query: 64 KYSAENLK 71 + +K Sbjct: 63 PQADNVVK 70 >gi|304396175|ref|ZP_07378057.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|308187103|ref|YP_003931234.1| Cold shock-like protein cspC [Pantoea vagans C9-1] gi|304356544|gb|EFM20909.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|308057613|gb|ADO09785.1| Cold shock-like protein cspC [Pantoea vagans C9-1] Length = 69 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQSVEFEI-QDGQKG 60 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 61 P-AAVNVTAI 69 >gi|322436156|ref|YP_004218368.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321163883|gb|ADW69588.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 92 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 5/74 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G + W++ KG+GF++ + G DVF+H SA+ + G +L EG+ V++D VQ D G Sbjct: 6 GKVMWFSNAKGFGFLSRD----GGADVFVHFSAIVNDGYKSLAEGEDVSFDVVQGD-KGP 60 Query: 65 YSAENLKLVPKSSN 78 +AE ++V S+ Sbjct: 61 QAAEVRRVVMGSTQ 74 >gi|114768941|ref|ZP_01446567.1| Cold-shock DNA-binding domain protein [alpha proteobacterium HTCC2255] gi|114549858|gb|EAU52739.1| Cold-shock DNA-binding domain protein [alpha proteobacterium HTCC2255] Length = 68 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P + G DVF+H +AV +AGL L + Q V+Y+ + + Sbjct: 1 MPNGTVKWFNGTKGYGFIAP---ADGGADVFVHITAVQAAGLQGLEDDQKVSYELEEGN- 56 Query: 62 NGKYSAENLKL 72 NGK +A N+ L Sbjct: 57 NGKQNATNIAL 67 >gi|15610784|ref|NP_218165.1| cold shock protein A [Mycobacterium tuberculosis H37Rv] gi|15843260|ref|NP_338297.1| cold-shock domain-contain protein [Mycobacterium tuberculosis CDC1551] gi|31794818|ref|NP_857311.1| cold shock protein A [Mycobacterium bovis AF2122/97] gi|41406521|ref|NP_959357.1| CspA_1 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464580|ref|YP_879797.1| hypothetical protein MAV_0516 [Mycobacterium avium 104] gi|121639561|ref|YP_979785.1| putative cold shock protein A cspA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663511|ref|YP_001285034.1| putative cold shock protein A [Mycobacterium tuberculosis H37Ra] gi|148824850|ref|YP_001289604.1| cold shock protein A cspA [Mycobacterium tuberculosis F11] gi|167968570|ref|ZP_02550847.1| cold shock protein A cspA [Mycobacterium tuberculosis H37Ra] gi|215405695|ref|ZP_03417876.1| cold shock protein A cspA [Mycobacterium tuberculosis 02_1987] gi|215413568|ref|ZP_03422240.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A] gi|215424892|ref|ZP_03422811.1| cold shock protein A cspA [Mycobacterium tuberculosis T92] gi|215447984|ref|ZP_03434736.1| cold shock protein A cspA [Mycobacterium tuberculosis T85] gi|218755426|ref|ZP_03534222.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503] gi|219559719|ref|ZP_03538795.1| cold shock protein A cspA [Mycobacterium tuberculosis T17] gi|224992058|ref|YP_002646747.1| putative cold shock protein A [Mycobacterium bovis BCG str. Tokyo 172] gi|253800688|ref|YP_003033689.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 1435] gi|254233144|ref|ZP_04926470.1| cold shock protein A cspA [Mycobacterium tuberculosis C] gi|254366198|ref|ZP_04982242.1| cold shock protein A cspA [Mycobacterium tuberculosis str. Haarlem] gi|254552760|ref|ZP_05143207.1| cold shock protein A cspA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|254773485|ref|ZP_05215001.1| putative cold shock protein A [Mycobacterium avium subsp. avium ATCC 25291] gi|260184565|ref|ZP_05762039.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A] gi|260198688|ref|ZP_05766179.1| cold shock protein A cspA [Mycobacterium tuberculosis T46] gi|260202831|ref|ZP_05770322.1| cold shock protein A cspA [Mycobacterium tuberculosis K85] gi|289441078|ref|ZP_06430822.1| cold shock protein A cspA [Mycobacterium tuberculosis T46] gi|289445242|ref|ZP_06434986.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A] gi|289555909|ref|ZP_06445119.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 605] gi|289571885|ref|ZP_06452112.1| cold shock protein A cspA [Mycobacterium tuberculosis T17] gi|289572295|ref|ZP_06452522.1| cold shock protein A cspA [Mycobacterium tuberculosis K85] gi|289747484|ref|ZP_06506862.1| cold shock protein A [Mycobacterium tuberculosis 02_1987] gi|289748162|ref|ZP_06507540.1| cold shock protein A cspA [Mycobacterium tuberculosis T92] gi|289759803|ref|ZP_06519181.1| cold shock protein A [Mycobacterium tuberculosis T85] gi|289763825|ref|ZP_06523203.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503] gi|294995441|ref|ZP_06801132.1| cold shock protein A cspA [Mycobacterium tuberculosis 210] gi|297636323|ref|ZP_06954103.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 4207] gi|297733316|ref|ZP_06962434.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN R506] gi|298527122|ref|ZP_07014531.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A] gi|306778001|ref|ZP_07416338.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu001] gi|306778534|ref|ZP_07416871.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu002] gi|306786555|ref|ZP_07424877.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu003] gi|306790921|ref|ZP_07429243.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu004] gi|306791241|ref|ZP_07429543.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu005] gi|306796028|ref|ZP_07434330.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu006] gi|306801275|ref|ZP_07437943.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu008] gi|306805489|ref|ZP_07442157.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu007] gi|306969780|ref|ZP_07482441.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu009] gi|306974119|ref|ZP_07486780.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu010] gi|307081827|ref|ZP_07490997.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu011] gi|307086441|ref|ZP_07495554.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu012] gi|313660648|ref|ZP_07817528.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN V2475] gi|54036917|sp|P63849|CSPA_MYCBO RecName: Full=Probable cold shock protein A gi|54040914|sp|P63848|CSPA_MYCTU RecName: Full=Probable cold shock protein A gi|2105046|emb|CAB08840.1| PROBABLE COLD SHOCK PROTEIN A CSPA [Mycobacterium tuberculosis H37Rv] gi|13883617|gb|AAK48111.1| cold-shock domain family protein [Mycobacterium tuberculosis CDC1551] gi|31620415|emb|CAD95858.1| PROBABLE COLD SHOCK PROTEIN A CSPA [Mycobacterium bovis AF2122/97] gi|41394870|gb|AAS02740.1| CspA_1 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165867|gb|ABK66764.1| conserved domain protein [Mycobacterium avium 104] gi|121495209|emb|CAL73695.1| Probable cold shock protein A cspA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602937|gb|EAY61212.1| cold shock protein A cspA [Mycobacterium tuberculosis C] gi|134151710|gb|EBA43755.1| cold shock protein A cspA [Mycobacterium tuberculosis str. Haarlem] gi|148507663|gb|ABQ75472.1| putative cold shock protein A [Mycobacterium tuberculosis H37Ra] gi|148723377|gb|ABR08002.1| cold shock protein A cspA [Mycobacterium tuberculosis F11] gi|224775173|dbj|BAH27979.1| putative cold shock protein A [Mycobacterium bovis BCG str. Tokyo 172] gi|253322191|gb|ACT26794.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 1435] gi|289413997|gb|EFD11237.1| cold shock protein A cspA [Mycobacterium tuberculosis T46] gi|289418200|gb|EFD15401.1| cold shock protein A cspA [Mycobacterium tuberculosis CPHL_A] gi|289440541|gb|EFD23034.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 605] gi|289536726|gb|EFD41304.1| cold shock protein A cspA [Mycobacterium tuberculosis K85] gi|289545639|gb|EFD49287.1| cold shock protein A cspA [Mycobacterium tuberculosis T17] gi|289688012|gb|EFD55500.1| cold shock protein A [Mycobacterium tuberculosis 02_1987] gi|289688749|gb|EFD56178.1| cold shock protein A cspA [Mycobacterium tuberculosis T92] gi|289711331|gb|EFD75347.1| cold shock protein A cspA [Mycobacterium tuberculosis GM 1503] gi|289715367|gb|EFD79379.1| cold shock protein A [Mycobacterium tuberculosis T85] gi|298496916|gb|EFI32210.1| cold shock protein A cspA [Mycobacterium tuberculosis 94_M4241A] gi|308213712|gb|EFO73111.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu001] gi|308328442|gb|EFP17293.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu002] gi|308328877|gb|EFP17728.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu003] gi|308332717|gb|EFP21568.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu004] gi|308340210|gb|EFP29061.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu005] gi|308343496|gb|EFP32347.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu006] gi|308347996|gb|EFP36847.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu007] gi|308351938|gb|EFP40789.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu008] gi|308352698|gb|EFP41549.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu009] gi|308356572|gb|EFP45423.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu010] gi|308360530|gb|EFP49381.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu011] gi|308364142|gb|EFP52993.1| cold shock protein A cspA [Mycobacterium tuberculosis SUMu012] gi|323717697|gb|EGB26898.1| cold shock protein A cspA [Mycobacterium tuberculosis CDC1551A] gi|326905483|gb|EGE52416.1| cold shock protein A cspA [Mycobacterium tuberculosis W-148] gi|328460418|gb|AEB05841.1| cold shock protein A cspA [Mycobacterium tuberculosis KZN 4207] Length = 67 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H + + G L E Q V ++ + Sbjct: 1 MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHS-P 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPQA 61 >gi|330446455|ref|ZP_08310107.1| cold shock domain protein CspD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490646|dbj|GAA04604.1| cold shock domain protein CspD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 73 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE + D+F H S + G L GQ V Y+ VQ Sbjct: 1 MATGTVKWFNNAKGFGFICPE---DGEGDIFAHYSTIQMEGYRTLKAGQQVNYE-VQAGP 56 Query: 62 NGKYSAENL 70 G +++E + Sbjct: 57 KGYHASEIV 65 >gi|289423507|ref|ZP_06425308.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] gi|289156009|gb|EFD04673.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] Length = 66 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI+ +G +DVF+H SA+ G +L EGQ V ++ V + + Sbjct: 1 MKVGVVKWFNNEKGFGFISVDGE----NDVFVHFSAIQGDGYKSLEEGQQVEFEIV-DGS 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGPQAANVTRV 66 >gi|225027993|ref|ZP_03717185.1| hypothetical protein EUBHAL_02262 [Eubacterium hallii DSM 3353] gi|224954707|gb|EEG35916.1| hypothetical protein EUBHAL_02262 [Eubacterium hallii DSM 3353] Length = 89 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFI ESG D+F+H + + G +L EG V +D VQ + Sbjct: 22 MFKGTVKWFNNQKGYGFIQ----DESGKDIFVHYTGLNMPGFKSLEEGNEVEFDIVQGE- 76 Query: 62 NGKYSAENLKL 72 G ++ +KL Sbjct: 77 KGPQASNVVKL 87 >gi|118595186|ref|ZP_01552533.1| putative cold-shock protein [Methylophilales bacterium HTCC2181] gi|118440964|gb|EAV47591.1| putative cold-shock protein [Methylophilales bacterium HTCC2181] Length = 67 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITPE + GDD+F H SA+ G +L EG+ VT++ + Sbjct: 1 MATGTVKWFNDSKGFGFITPE---DGGDDLFAHFSAIVDDGYKSLKEGETVTFEVT-DGP 56 Query: 62 NGKYSAENLK 71 GK A N++ Sbjct: 57 KGKQ-ASNIQ 65 >gi|21222143|ref|NP_627922.1| cold-shock protein [Streptomyces coelicolor A3(2)] gi|256786771|ref|ZP_05525202.1| cold-shock protein [Streptomyces lividans TK24] gi|289770662|ref|ZP_06530040.1| cold-shock protein [Streptomyces lividans TK24] gi|7210998|emb|CAB76978.1| cold-shock protein [Streptomyces coelicolor A3(2)] gi|289700861|gb|EFD68290.1| cold-shock protein [Streptomyces lividans TK24] Length = 67 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S + + G L EGQ VT+D Q Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNINAQGFRELLEGQKVTFDIAQGQK 57 Query: 62 NGKYSAENLK 71 +AEN+ Sbjct: 58 G--PTAENIT 65 >gi|330446013|ref|ZP_08309665.1| 'Cold-shock' DNA-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490204|dbj|GAA04162.1| 'Cold-shock' DNA-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 69 Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT + G DVF+H A+ G L EGQ V+++ Q G Sbjct: 5 TGTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLAEGQKVSFETEQG-PKG 60 Query: 64 KYSAENLKL 72 +A K+ Sbjct: 61 LQAANVEKV 69 >gi|332187928|ref|ZP_08389661.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17] gi|332012089|gb|EGI54161.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17] Length = 70 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKGYGFI+P+G G+D F+H SAV AG+ +L + Q + Y+ Q D Sbjct: 1 MSMSGTVKFFNADKGYGFISPDG---GGNDAFVHISAVERAGMISLNQNQRLNYELEQ-D 56 Query: 61 ANGKYSAENLK 71 GK SA NL+ Sbjct: 57 RRGKTSAVNLQ 67 >gi|37525773|ref|NP_929117.1| hypothetical protein plu1842 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785202|emb|CAE14135.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 70 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + +N A G Sbjct: 6 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFTI-ENGAKG 61 Query: 64 KYSAENLKL 72 +A + + Sbjct: 62 PAAANVMAI 70 >gi|257874927|ref|ZP_05654580.1| cold-shock protein [Enterococcus casseliflavus EC20] gi|257809093|gb|EEV37913.1| cold-shock protein [Enterococcus casseliflavus EC20] Length = 66 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFIT E G+DVF H SA+ G L EGQ VT+D V+ Sbjct: 1 MNNGTVKWFNADKGFGFIT----GEDGNDVFAHFSAIQGEGFKTLEEGQAVTFD-VEEGQ 55 Query: 62 NGKYSAENLK 71 G + +K Sbjct: 56 RGLQATNIVK 65 >gi|156934364|ref|YP_001438280.1| hypothetical protein ESA_02195 [Cronobacter sakazakii ATCC BAA-894] gi|156532618|gb|ABU77444.1| hypothetical protein ESA_02195 [Cronobacter sakazakii ATCC BAA-894] Length = 70 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI P + DVF+H SA+ S LTEGQ V + V+N A G Sbjct: 6 NGSVKWFNADKGFGFIAP---ADGSKDVFVHFSAIQSDNFRTLTEGQQVEFS-VENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVVAL 70 >gi|16124918|ref|NP_419482.1| cold-shock domain-contain protein [Caulobacter crescentus CB15] gi|221233638|ref|YP_002516074.1| cold shock protein [Caulobacter crescentus NA1000] gi|13421882|gb|AAK22650.1| cold-shock domain family protein [Caulobacter crescentus CB15] gi|220962810|gb|ACL94166.1| cold shock protein [Caulobacter crescentus NA1000] Length = 69 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P ++ D F+H SAV +GL ++ EGQ + Y+ ++ Sbjct: 1 MATGTVKWFNAAKGFGFIQP---SDGSADAFVHISAVERSGLGSIDEGQKLNYELERDQR 57 Query: 62 NGKYSAENLK 71 +GK SA L Sbjct: 58 SGKMSAGQLT 67 >gi|319400562|gb|EFV88792.1| cold shock protein cspD [Staphylococcus epidermidis FRI909] Length = 66 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFI + +G+DVF+H S +A G +L EGQ V +D V+ Sbjct: 1 MNNGTVKWFNADKGFGFIERD----NGNDVFVHYSGIAGEGYKSLEEGQNVDFDIVEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 57 G--EQATNVVVM 66 >gi|307313742|ref|ZP_07593360.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|306899232|gb|EFN29869.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKG+GFITPE G DVF+H SA+ G +L EG V+Y+ Q+ Sbjct: 1 MPTGTVKFFNDDKGFGFITPE---NGGTDVFVHVSALQRGG--SLKEGDKVSYEVGQDRK 55 Query: 62 NGKYSAENLKLV 73 GK AEN+ ++ Sbjct: 56 TGKSKAENVSVL 67 >gi|294497748|ref|YP_003561448.1| cold shock protein [Bacillus megaterium QM B1551] gi|295703123|ref|YP_003596198.1| cold shock protein [Bacillus megaterium DSM 319] gi|294347685|gb|ADE68014.1| cold shock protein [Bacillus megaterium QM B1551] gi|294800782|gb|ADF37848.1| cold shock protein [Bacillus megaterium DSM 319] Length = 65 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KG+GFI EG DDVF+H SA+ G +L EGQ VT++ ++ A Sbjct: 1 MVQGKVKWFNAEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKSLEEGQEVTFEI-EDGA 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|225377225|ref|ZP_03754446.1| hypothetical protein ROSEINA2194_02871 [Roseburia inulinivorans DSM 16841] gi|225210929|gb|EEG93283.1| hypothetical protein ROSEINA2194_02871 [Roseburia inulinivorans DSM 16841] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGFI S E G+DVF+H S + G +L EG V ++ V+ Sbjct: 1 MNKGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMEGFKSLEEGAAVEFEVVEGAK 56 Query: 62 NGKYSAENLKLV 73 A N+ +V Sbjct: 57 G--PQATNVTVV 66 >gi|50121319|ref|YP_050486.1| cold shock-like protein CspC [Pectobacterium atrosepticum SCRI1043] gi|85059298|ref|YP_455000.1| cold shock-like protein CspC [Sodalis glossinidius str. 'morsitans'] gi|227111514|ref|ZP_03825170.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327800|ref|ZP_03831824.1| cold shock-like protein CspC [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253688307|ref|YP_003017497.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261821484|ref|YP_003259590.1| cold shock-like protein CspC [Pectobacterium wasabiae WPP163] gi|49611845|emb|CAG75294.1| cold shock protein [Pectobacterium atrosepticum SCRI1043] gi|84779818|dbj|BAE74595.1| cold shock protein [Sodalis glossinidius str. 'morsitans'] gi|251754885|gb|ACT12961.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261605497|gb|ACX87983.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] Length = 69 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60 Query: 64 KYSAENLKLV 73 SA N+ + Sbjct: 61 P-SAVNVTAL 69 >gi|117618294|ref|YP_856386.1| cold shock domain-containing protein CspD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559701|gb|ABK36649.1| cold shock domain protein CspD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 72 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG G+D+F H S + G L GQ V ++ Q Sbjct: 1 MATGTVKWFNNAKGFGFICPEG---GGEDIFAHDSTIQMEGYKTLKAGQAVNFELQQG-P 56 Query: 62 NGKYSAENLKLVPKSSN 78 G +++ +VP + Sbjct: 57 KGNHASV---IVPNEAQ 70 >gi|291285774|ref|YP_003502592.1| Cold shock-like protein cspB [Escherichia coli O55:H7 str. CB9615] gi|331666060|ref|ZP_08366954.1| conserved domain protein [Escherichia coli TA143] gi|290765647|gb|ADD59608.1| Cold shock-like protein cspB [Escherichia coli O55:H7 str. CB9615] gi|331057111|gb|EGI29105.1| conserved domain protein [Escherichia coli TA143] Length = 71 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + DVF+H SA+ + L EGQ VT+ V++ A G Sbjct: 6 TGLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFS-VESGAKG 61 Query: 64 KYSAENL 70 +A + Sbjct: 62 PAAANVI 68 >gi|227822821|ref|YP_002826793.1| putative cold shock protein [Sinorhizobium fredii NGR234] gi|227341822|gb|ACP26040.1| putative cold shock protein [Sinorhizobium fredii NGR234] Length = 71 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI PE G D+F+H SAV ++GL L+E Q V++D + Sbjct: 1 MAETGTVKFFNTDKGFGFIKPE---NGGADIFVHISAVQASGLNGLSENQKVSFDTEPDR 57 Query: 61 ANGKYSAENLKLV 73 A NL++V Sbjct: 58 RGKGPKAVNLQIV 70 >gi|293400346|ref|ZP_06644492.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306746|gb|EFE47989.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 6/69 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI S+E G DVF+H S + G +L EGQ VT++ V++D Sbjct: 2 KGKVKWFNAEKGYGFI----SSEDGKDVFVHYSQILQDGYKSLEEGQTVTFEAVESDKG- 56 Query: 64 KYSAENLKL 72 A N+++ Sbjct: 57 -LQARNVEV 64 >gi|218189944|gb|EEC72371.1| hypothetical protein OsI_05633 [Oryza sativa Indica Group] Length = 131 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 47/70 (67%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 HRG++KW+N KG+GFI+P+ + +D+F+H+S++ + G +L EG+ V + +++ Sbjct: 6 RHRGTVKWFNDTKGFGFISPD---DGSEDLFVHQSSIKADGFRSLAEGEQVEFAISESE- 61 Query: 62 NGKYSAENLK 71 +G+ A ++ Sbjct: 62 DGRTKAVDVT 71 >gi|189485194|ref|YP_001956135.1| cold shock RNA chaperon protein [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287153|dbj|BAG13674.1| cold shock RNA chaperon protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KGYGFI+ + + DVF H SA+ S G +L EG V ++ V +D Sbjct: 1 MAQGKVKWFNDQKGYGFISND---DGSGDVFAHYSAIQSDGFKSLAEGDSVEFEIVNSDK 57 Query: 62 NGKYSAENLKLV 73 K A N+K + Sbjct: 58 GPK--AANIKKI 67 >gi|290474928|ref|YP_003467812.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus bovienii SS-2004] gi|300722620|ref|YP_003711910.1| cold shock protein, transcription antiterminator [Xenorhabdus nematophila ATCC 19061] gi|289174245|emb|CBJ81034.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus bovienii SS-2004] gi|297629127|emb|CBJ89717.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Xenorhabdus nematophila ATCC 19061] Length = 70 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + +N A G Sbjct: 6 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFTI-ENGAKG 61 Query: 64 KYSAENLKL 72 +A + Sbjct: 62 PAAANVTAI 70 >gi|260772014|ref|ZP_05880931.1| putative Cold shock-like protein [Vibrio metschnikovii CIP 69.14] gi|260612881|gb|EEX38083.1| putative Cold shock-like protein [Vibrio metschnikovii CIP 69.14] Length = 70 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GF++ + G DVF+H +A+AS G L EGQ V++ V+N G Sbjct: 6 TGTVKWFNETKGFGFLSQD---NGGADVFVHFNAIASEGFKTLIEGQKVSF-VVENGQKG 61 Query: 64 KYSAENLKL 72 +A+ + L Sbjct: 62 LQAAQVVTL 70 >gi|118443638|ref|YP_878429.1| cold shock protein -related protein [Clostridium novyi NT] gi|168186566|ref|ZP_02621201.1| conserved domain protein [Clostridium botulinum C str. Eklund] gi|118134094|gb|ABK61138.1| cold shock protein -related protein [Clostridium novyi NT] gi|169295395|gb|EDS77528.1| conserved domain protein [Clostridium botulinum C str. Eklund] Length = 65 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT TE G+DVF H S + G L EGQ V++D V+ Sbjct: 2 TGTVKWFNAEKGFGFIT----TEEGNDVFAHFSQINKDGFKTLEEGQNVSFDVVEGAKG- 56 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 57 -PQAENISVL 65 >gi|53720168|ref|YP_109154.1| cold shock-like protein [Burkholderia pseudomallei K96243] gi|76811439|ref|YP_334418.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|83720914|ref|YP_442133.1| cold-shock domain-contain protein [Burkholderia thailandensis E264] gi|126441090|ref|YP_001059958.1| cold-shock domain-contain protein [Burkholderia pseudomallei 668] gi|126452235|ref|YP_001067250.1| cold-shock domain-contain protein [Burkholderia pseudomallei 1106a] gi|167581004|ref|ZP_02373878.1| cold-shock domain family protein [Burkholderia thailandensis TXDOH] gi|167619082|ref|ZP_02387713.1| cold-shock domain family protein [Burkholderia thailandensis Bt4] gi|167720733|ref|ZP_02403969.1| cold-shock domain family protein [Burkholderia pseudomallei DM98] gi|167739716|ref|ZP_02412490.1| cold-shock domain family protein [Burkholderia pseudomallei 14] gi|167816920|ref|ZP_02448600.1| cold-shock domain family protein [Burkholderia pseudomallei 91] gi|167825323|ref|ZP_02456794.1| cold-shock domain family protein [Burkholderia pseudomallei 9] gi|167846825|ref|ZP_02472333.1| cold-shock domain family protein [Burkholderia pseudomallei B7210] gi|167895416|ref|ZP_02482818.1| cold-shock domain family protein [Burkholderia pseudomallei 7894] gi|167903800|ref|ZP_02491005.1| cold-shock domain family protein [Burkholderia pseudomallei NCTC 13177] gi|167912067|ref|ZP_02499158.1| cold-shock domain family protein [Burkholderia pseudomallei 112] gi|167920041|ref|ZP_02507132.1| cold-shock domain family protein [Burkholderia pseudomallei BCC215] gi|217421179|ref|ZP_03452684.1| cold shock family protein [Burkholderia pseudomallei 576] gi|226193900|ref|ZP_03789502.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9] gi|226197837|ref|ZP_03793411.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9] gi|237813374|ref|YP_002897825.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|242316730|ref|ZP_04815746.1| cold shock family protein [Burkholderia pseudomallei 1106b] gi|254181035|ref|ZP_04887633.1| cold-shock domain family protein [Burkholderia pseudomallei 1655] gi|52210582|emb|CAH36565.1| cold shock-like protein [Burkholderia pseudomallei K96243] gi|76580892|gb|ABA50367.1| cold shock transcription regulator protein [Burkholderia pseudomallei 1710b] gi|83654739|gb|ABC38802.1| cold-shock domain family protein-related protein [Burkholderia thailandensis E264] gi|126220583|gb|ABN84089.1| cold shock family protein [Burkholderia pseudomallei 668] gi|126225877|gb|ABN89417.1| cold shock family protein [Burkholderia pseudomallei 1106a] gi|184211574|gb|EDU08617.1| cold-shock domain family protein [Burkholderia pseudomallei 1655] gi|217396591|gb|EEC36608.1| cold shock family protein [Burkholderia pseudomallei 576] gi|225930025|gb|EEH26038.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9] gi|225934205|gb|EEH30190.1| cold shock family protein [Burkholderia pseudomallei Pakistan 9] gi|237503488|gb|ACQ95806.1| cold-shock DNA-binding domain protein [Burkholderia pseudomallei MSHR346] gi|242139969|gb|EES26371.1| cold shock family protein [Burkholderia pseudomallei 1106b] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V+++ V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMEGFKTLKENQRVSFE-VKTGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|119776095|ref|YP_928835.1| cold-shock DNA-binding domain-containing protein [Shewanella amazonensis SB2B] gi|119768595|gb|ABM01166.1| cold-shock DNA-binding protein family [Shewanella amazonensis SB2B] Length = 70 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFITP+ G DVF+H A+A G L EGQ V ++ Q + Sbjct: 6 TGSVKWFNETKGFGFITPD---NGGADVFVHFRAIAVDGFKTLAEGQQVQFNVEQGNKG- 61 Query: 64 KYSAENLKLV 73 A N+ L+ Sbjct: 62 -PQAANVTLL 70 >gi|228908166|ref|ZP_04072014.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|229017742|ref|ZP_04174631.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|229023958|ref|ZP_04180438.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|229096909|ref|ZP_04227878.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|229103017|ref|ZP_04233706.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|229115898|ref|ZP_04245295.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|229161370|ref|ZP_04289355.1| Cold shock protein cspB [Bacillus cereus R309803] gi|229173122|ref|ZP_04300673.1| Cold shock protein cspB [Bacillus cereus MM3] gi|228610455|gb|EEK67726.1| Cold shock protein cspB [Bacillus cereus MM3] gi|228622184|gb|EEK79025.1| Cold shock protein cspB [Bacillus cereus R309803] gi|228667560|gb|EEL23005.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|228680432|gb|EEL34620.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|228686519|gb|EEL40428.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|228737336|gb|EEL87851.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|228743558|gb|EEL93669.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|228851584|gb|EEM96390.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G+DVF+H SA+ G +L EGQ V+++ V++ Sbjct: 1 MTLTGKVKWFNSEKGFGFIE----VADGNDVFVHFSAITGDGFKSLDEGQEVSFE-VEDG 55 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 56 NRGPQAKNVVKL 67 >gi|254492515|ref|ZP_05105687.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga thiooxidans DMS010] gi|224462407|gb|EEF78684.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga thiooxydans DMS010] Length = 68 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF H S + G L EGQ V + Q Sbjct: 5 TGTVKWFNEAKGFGFIEQE----SGPDVFAHFSQIKGDGFRTLNEGQRVEFTVTQGAKG- 59 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 60 -PQAENITAL 68 >gi|146283032|ref|YP_001173185.1| cold shock protein CspA [Pseudomonas stutzeri A1501] gi|145571237|gb|ABP80343.1| cold shock protein CspA [Pseudomonas stutzeri A1501] Length = 136 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFI +G DVF+H A+ G +L EGQ V + +Q Sbjct: 71 RETGTVKWFNDAKGYGFIQ----RGNGADVFVHYRAIRGDGHRSLAEGQQVEFSVIQGQK 126 Query: 62 NGKYSAENL 70 AE++ Sbjct: 127 G--LQAEDV 133 >gi|303229892|ref|ZP_07316668.1| cold shock protein CspB [Veillonella atypica ACS-134-V-Col7a] gi|303232195|ref|ZP_07318898.1| cold shock protein CspB [Veillonella atypica ACS-049-V-Sch6] gi|302513301|gb|EFL55340.1| cold shock protein CspB [Veillonella atypica ACS-049-V-Sch6] gi|302515448|gb|EFL57414.1| cold shock protein CspB [Veillonella atypica ACS-134-V-Col7a] Length = 65 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KGYGFI E G DVF+H SA+ G +L+EGQ VT+D V + G Sbjct: 3 GKVKWFSAEKGYGFIERE----DGSDVFVHFSAIQDEGFKSLSEGQNVTFDIV-DGNRGP 57 Query: 65 YSAENLK 71 +A +K Sbjct: 58 QAANVVK 64 >gi|228991370|ref|ZP_04151325.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] gi|228997469|ref|ZP_04157086.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|229008676|ref|ZP_04166076.1| Cold shock protein cspB [Bacillus mycoides Rock1-4] gi|228752529|gb|EEM02157.1| Cold shock protein cspB [Bacillus mycoides Rock1-4] gi|228762265|gb|EEM11194.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|228768300|gb|EEM16908.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI E G DVF+H SA+ G +L EGQ V+++ + + Sbjct: 1 MTLTGKVKWFNSEKGFGFIEVE----DGSDVFVHFSAITGEGFKSLDEGQEVSFEVEEGN 56 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 57 -RGPQAKNVVKL 67 >gi|15838943|ref|NP_299631.1| cold shock protein [Xylella fastidiosa 9a5c] gi|9107526|gb|AAF85151.1|AE004045_9 cold shock protein [Xylella fastidiosa 9a5c] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ KG+GFI+P+ + +VF H S + S G +L EGQ VTYD Q Sbjct: 1 MQSGTVKWFSDQKGFGFISPD---DGTPEVFAHYSGINSKGFRSLHEGQRVTYDVTQGPK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--PQASNITPI 67 >gi|16129516|ref|NP_416075.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. MG1655] gi|89108399|ref|AP_002179.1| cold shock protein [Escherichia coli str. K-12 substr. W3110] gi|170020092|ref|YP_001725046.1| cold-shock DNA-binding domain-containing protein [Escherichia coli ATCC 8739] gi|170081225|ref|YP_001730545.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|193066912|ref|ZP_03047881.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194436474|ref|ZP_03068575.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|218554119|ref|YP_002387032.1| cold shock protein; Qin prophage [Escherichia coli IAI1] gi|218699873|ref|YP_002407502.1| cold shock protein; Qin prophage [Escherichia coli IAI39] gi|218705059|ref|YP_002412578.1| cold shock protein; Qin prophage [Escherichia coli UMN026] gi|238900777|ref|YP_002926573.1| Qin prophage; cold shock protein [Escherichia coli BW2952] gi|293405060|ref|ZP_06649052.1| cold shock-like protein cspB [Escherichia coli FVEC1412] gi|298380705|ref|ZP_06990304.1| cold shock-like protein cspB [Escherichia coli FVEC1302] gi|300899666|ref|ZP_07117897.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300903929|ref|ZP_07121824.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300919925|ref|ZP_07136387.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300938348|ref|ZP_07153102.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|301025117|ref|ZP_07188711.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|301306487|ref|ZP_07212553.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|301326428|ref|ZP_07219780.1| transcriptional repressor activity CueR [Escherichia coli MS 78-1] gi|301647720|ref|ZP_07247513.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|307138212|ref|ZP_07497568.1| cold shock protein; Qin prophage [Escherichia coli H736] gi|307310877|ref|ZP_07590523.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|312969569|ref|ZP_07783752.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|331642145|ref|ZP_08343280.1| conserved domain protein [Escherichia coli H736] gi|331652935|ref|ZP_08353940.1| conserved domain protein [Escherichia coli M718] gi|544108|sp|P36995|CSPB_ECOLI RecName: Full=Cold shock-like protein CspB; Short=CSP-B gi|479003|gb|AAA23618.1| cold-shock protein [Escherichia coli] gi|1742552|dbj|BAA15256.1| cold shock protein [Escherichia coli str. K12 substr. W3110] gi|1787839|gb|AAC74630.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. MG1655] gi|2226341|gb|AAB61739.1| CspB [Escherichia coli str. K-12 substr. W3110] gi|169755020|gb|ACA77719.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|169889060|gb|ACB02767.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|192959502|gb|EDV89936.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194424506|gb|EDX40492.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|218360887|emb|CAQ98457.1| cold shock protein; Qin prophage [Escherichia coli IAI1] gi|218369859|emb|CAR17633.1| cold shock protein; Qin prophage [Escherichia coli IAI39] gi|218432156|emb|CAR13044.1| cold shock protein; Qin prophage [Escherichia coli UMN026] gi|238863368|gb|ACR65366.1| Qin prophage; cold shock protein [Escherichia coli BW2952] gi|260449320|gb|ACX39742.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|284921462|emb|CBG34531.1| cold shock-like protein [Escherichia coli 042] gi|291427268|gb|EFF00295.1| cold shock-like protein cspB [Escherichia coli FVEC1412] gi|298278147|gb|EFI19661.1| cold shock-like protein cspB [Escherichia coli FVEC1302] gi|300356791|gb|EFJ72661.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300396226|gb|EFJ79764.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|300404089|gb|EFJ87627.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300413046|gb|EFJ96356.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300456684|gb|EFK20177.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|300838293|gb|EFK66053.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|300846844|gb|EFK74604.1| transcriptional repressor activity CueR [Escherichia coli MS 78-1] gi|301074155|gb|EFK88961.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|306909055|gb|EFN39551.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|310337854|gb|EFQ02943.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|312946160|gb|ADR26987.1| Qin prophage; cold shock protein [Escherichia coli O83:H1 str. NRG 857C] gi|315060857|gb|ADT75184.1| Qin prophage; cold shock protein [Escherichia coli W] gi|315136198|dbj|BAJ43357.1| cold shock-like protein cspB [Escherichia coli DH1] gi|315253261|gb|EFU33229.1| transcriptional repressor activity CueR [Escherichia coli MS 85-1] gi|320197745|gb|EFW72353.1| Cold shock protein CspB [Escherichia coli EC4100B] gi|320643977|gb|EFX13064.1| Qin prophage; cold shock protein [Escherichia coli O157:H- str. 493-89] gi|320649406|gb|EFX17948.1| Qin prophage; cold shock protein [Escherichia coli O157:H- str. H 2687] gi|320660405|gb|EFX27873.1| Qin prophage; cold shock protein [Escherichia coli O55:H7 str. USDA 5905] gi|323169849|gb|EFZ55505.1| cold shock-like protein cspG [Escherichia coli LT-68] gi|323185905|gb|EFZ71262.1| cold shock-like protein cspG [Escherichia coli 1357] gi|323378572|gb|ADX50840.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323942036|gb|EGB38214.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323947934|gb|EGB43929.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323973801|gb|EGB68975.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|331038943|gb|EGI11163.1| conserved domain protein [Escherichia coli H736] gi|331049033|gb|EGI21105.1| conserved domain protein [Escherichia coli M718] gi|332343266|gb|AEE56600.1| cold shock-like protein CspG [Escherichia coli UMNK88] Length = 71 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + DVF+H SA+ + L EGQ VT+ ++ A G Sbjct: 6 TGLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSI-ESGAKG 61 Query: 64 KYSAENL 70 +A + Sbjct: 62 PAAANVI 68 >gi|331269838|ref|YP_004396330.1| cold shock protein [Clostridium botulinum BKT015925] gi|329126388|gb|AEB76333.1| cold shock protein [Clostridium botulinum BKT015925] Length = 65 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT TE G+DVF H S + G L EGQ V++D V+ Sbjct: 2 TGTVKWFNAEKGFGFIT----TEEGNDVFAHFSQINKEGFKTLEEGQNVSFDVVEGAKG- 56 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 57 -PQAENITIL 65 >gi|220911667|ref|YP_002486976.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|219858545|gb|ACL38887.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] Length = 68 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGFIT +GS GDD+F+H SA+ G L EGQ V + + + Sbjct: 1 MALGTVKWFNAEKGYGFITVDGS---GDDIFVHWSAIQGEGYRALDEGQRVELEVGEGEK 57 Query: 62 NGKYSAENLK 71 AE+++ Sbjct: 58 G--PQAESVR 65 >gi|149276323|ref|ZP_01882467.1| stress protein, member of the CspA-family [Pedobacter sp. BAL39] gi|149232843|gb|EDM38218.1| stress protein, member of the CspA-family [Pedobacter sp. BAL39] Length = 68 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N KG+GFITPE G D+F+H SA+A L EG V ++ + Sbjct: 1 MRTTGKVKWFNSAKGFGFITPE---NGGKDIFVHFSAIAGDSFRELNEGDSVEFEL-NDG 56 Query: 61 ANGKYSAENLKLV 73 G +A N+ ++ Sbjct: 57 KKGPEAA-NVTVL 68 >gi|37725749|gb|AAO32343.1| cold shock protein 3 [Streptomyces sp. AA8321] Length = 65 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI + G DVF H S + ++G +L E Q V ++ Q Sbjct: 1 MASGTVKWFNAEKGFGFIEQDT---GGPDVFAHYSNIRASGFRSLEEAQRVEFNVTQGQK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENVS 65 >gi|30021641|ref|NP_833272.1| cold shock protein [Bacillus cereus ATCC 14579] gi|30263487|ref|NP_845864.1| cold shock protein CspB [Bacillus anthracis str. Ames] gi|42782603|ref|NP_979850.1| cold shock protein CspB [Bacillus cereus ATCC 10987] gi|47528880|ref|YP_020229.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor'] gi|47569978|ref|ZP_00240642.1| cold-shock domain family protein-related protein [Bacillus cereus G9241] gi|49186338|ref|YP_029590.1| cold shock protein CspB [Bacillus anthracis str. Sterne] gi|49479281|ref|YP_037619.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141994|ref|YP_084834.1| cold shock protein [Bacillus cereus E33L] gi|118478788|ref|YP_895939.1| cold-shock DNA-binding protein family protein [Bacillus thuringiensis str. Al Hakam] gi|167637065|ref|ZP_02395345.1| cold shock protein CspB [Bacillus anthracis str. A0193] gi|190564523|ref|ZP_03017444.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I] gi|196034229|ref|ZP_03101639.1| cold shock protein CspB [Bacillus cereus W] gi|196038347|ref|ZP_03105656.1| cold shock protein CspB [Bacillus cereus NVH0597-99] gi|196043023|ref|ZP_03110262.1| cold shock protein CspB [Bacillus cereus 03BB108] gi|206969007|ref|ZP_03229962.1| cold shock protein CspB [Bacillus cereus AH1134] gi|206975495|ref|ZP_03236408.1| cold shock protein CspB [Bacillus cereus H3081.97] gi|217960932|ref|YP_002339500.1| cold shock protein CspB [Bacillus cereus AH187] gi|218232785|ref|YP_002368351.1| cold shock protein CspB [Bacillus cereus B4264] gi|218898630|ref|YP_002447041.1| cold shock protein CspB [Bacillus cereus G9842] gi|218904664|ref|YP_002452498.1| cold shock protein CspB [Bacillus cereus AH820] gi|222096990|ref|YP_002531047.1| cold shock protein [Bacillus cereus Q1] gi|225865502|ref|YP_002750880.1| cold shock protein CspB [Bacillus cereus 03BB102] gi|227813634|ref|YP_002813643.1| cold shock protein CspB [Bacillus anthracis str. CDC 684] gi|228902007|ref|ZP_04066172.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|228912180|ref|ZP_04075895.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|228916152|ref|ZP_04079722.1| Cold shock protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228922246|ref|ZP_04085553.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228928576|ref|ZP_04091613.1| Cold shock protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934813|ref|ZP_04097644.1| Cold shock protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228940621|ref|ZP_04103187.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228947154|ref|ZP_04109448.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228953805|ref|ZP_04115844.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959724|ref|ZP_04121399.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228969486|ref|ZP_04130298.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228973540|ref|ZP_04134124.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980099|ref|ZP_04140415.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|228986625|ref|ZP_04146756.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229047204|ref|ZP_04192818.1| Cold shock protein cspB [Bacillus cereus AH676] gi|229071035|ref|ZP_04204261.1| Cold shock protein cspB [Bacillus cereus F65185] gi|229080742|ref|ZP_04213260.1| Cold shock protein cspB [Bacillus cereus Rock4-2] gi|229092502|ref|ZP_04223658.1| Cold shock protein cspB [Bacillus cereus Rock3-42] gi|229110960|ref|ZP_04240521.1| Cold shock protein cspB [Bacillus cereus Rock1-15] gi|229123055|ref|ZP_04252262.1| Cold shock protein cspB [Bacillus cereus 95/8201] gi|229128809|ref|ZP_04257786.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4] gi|229140143|ref|ZP_04268701.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26] gi|229146104|ref|ZP_04274481.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|229151732|ref|ZP_04279933.1| Cold shock protein cspB [Bacillus cereus m1550] gi|229159169|ref|ZP_04287204.1| Cold shock protein cspB [Bacillus cereus ATCC 4342] gi|229162371|ref|ZP_04290334.1| Cold shock protein cspB [Bacillus cereus R309803] gi|229179821|ref|ZP_04307168.1| Cold shock protein cspB [Bacillus cereus 172560W] gi|229185756|ref|ZP_04312933.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1] gi|229191625|ref|ZP_04318604.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|229197647|ref|ZP_04324368.1| Cold shock protein cspB [Bacillus cereus m1293] gi|229600528|ref|YP_002867733.1| cold shock protein CspB [Bacillus anthracis str. A0248] gi|254686104|ref|ZP_05149963.1| cold shock protein CspB [Bacillus anthracis str. CNEVA-9066] gi|254723505|ref|ZP_05185293.1| cold shock protein CspB [Bacillus anthracis str. A1055] gi|254738577|ref|ZP_05196280.1| cold shock protein CspB [Bacillus anthracis str. Western North America USA6153] gi|254744864|ref|ZP_05202542.1| cold shock protein CspB [Bacillus anthracis str. Kruger B] gi|296504044|ref|YP_003665744.1| cold shock protein [Bacillus thuringiensis BMB171] gi|300117665|ref|ZP_07055447.1| cold shock protein CspB [Bacillus cereus SJ1] gi|301055025|ref|YP_003793236.1| cold shock protein [Bacillus anthracis CI] gi|29897196|gb|AAP10473.1| Cold shock protein [Bacillus cereus ATCC 14579] gi|30258122|gb|AAP27350.1| cold shock protein CspB [Bacillus anthracis str. Ames] gi|42738529|gb|AAS42458.1| cold shock protein CspB [Bacillus cereus ATCC 10987] gi|47504028|gb|AAT32704.1| cold shock protein CspB [Bacillus anthracis str. 'Ames Ancestor'] gi|47553376|gb|EAL11763.1| cold-shock domain family protein-related protein [Bacillus cereus G9241] gi|49180265|gb|AAT55641.1| cold shock protein CspB [Bacillus anthracis str. Sterne] gi|49330837|gb|AAT61483.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975463|gb|AAU17013.1| cold shock protein [Bacillus cereus E33L] gi|118418013|gb|ABK86432.1| cold-shock DNA-binding protein family [Bacillus thuringiensis str. Al Hakam] gi|167514572|gb|EDR89938.1| cold shock protein CspB [Bacillus anthracis str. A0193] gi|190563840|gb|EDV17804.1| cold shock protein CspB [Bacillus anthracis Tsiankovskii-I] gi|195993303|gb|EDX57261.1| cold shock protein CspB [Bacillus cereus W] gi|196026507|gb|EDX65175.1| cold shock protein CspB [Bacillus cereus 03BB108] gi|196030755|gb|EDX69353.1| cold shock protein CspB [Bacillus cereus NVH0597-99] gi|206736048|gb|EDZ53206.1| cold shock protein CspB [Bacillus cereus AH1134] gi|206746397|gb|EDZ57791.1| cold shock protein CspB [Bacillus cereus H3081.97] gi|217063996|gb|ACJ78246.1| cold shock protein CspB [Bacillus cereus AH187] gi|218160742|gb|ACK60734.1| cold shock protein CspB [Bacillus cereus B4264] gi|218538592|gb|ACK90990.1| cold shock protein CspB [Bacillus cereus AH820] gi|218542988|gb|ACK95382.1| cold shock protein CspB [Bacillus cereus G9842] gi|221241048|gb|ACM13758.1| cold shock protein [Bacillus cereus Q1] gi|225790203|gb|ACO30420.1| cold shock protein CspB [Bacillus cereus 03BB102] gi|227002717|gb|ACP12460.1| cold shock protein CspB [Bacillus anthracis str. CDC 684] gi|228585836|gb|EEK43933.1| Cold shock protein cspB [Bacillus cereus m1293] gi|228591787|gb|EEK49627.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|228597728|gb|EEK55371.1| Cold shock protein cspB [Bacillus cereus BGSC 6E1] gi|228603650|gb|EEK61124.1| Cold shock protein cspB [Bacillus cereus 172560W] gi|228621055|gb|EEK77918.1| Cold shock protein cspB [Bacillus cereus R309803] gi|228624303|gb|EEK81095.1| Cold shock protein cspB [Bacillus cereus ATCC 4342] gi|228631793|gb|EEK88421.1| Cold shock protein cspB [Bacillus cereus m1550] gi|228637444|gb|EEK93897.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|228643229|gb|EEK99502.1| Cold shock protein cspB [Bacillus cereus BDRD-ST26] gi|228654697|gb|EEL10558.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4] gi|228660349|gb|EEL15982.1| Cold shock protein cspB [Bacillus cereus 95/8201] gi|228672541|gb|EEL27824.1| Cold shock protein cspB [Bacillus cereus Rock1-15] gi|228690789|gb|EEL44564.1| Cold shock protein cspB [Bacillus cereus Rock3-42] gi|228702476|gb|EEL54944.1| Cold shock protein cspB [Bacillus cereus Rock4-2] gi|228711975|gb|EEL63924.1| Cold shock protein cspB [Bacillus cereus F65185] gi|228724165|gb|EEL75508.1| Cold shock protein cspB [Bacillus cereus AH676] gi|228773110|gb|EEM21545.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228779685|gb|EEM27936.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|228786235|gb|EEM34230.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228790229|gb|EEM37999.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228799854|gb|EEM46796.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805773|gb|EEM52353.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228812401|gb|EEM58728.1| Cold shock protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228819127|gb|EEM65186.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228824713|gb|EEM70514.1| Cold shock protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228831088|gb|EEM76688.1| Cold shock protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228837301|gb|EEM82635.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228843350|gb|EEM88428.1| Cold shock protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228847517|gb|EEM92456.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|228857593|gb|EEN02088.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|229264936|gb|ACQ46573.1| cold shock protein CspB [Bacillus anthracis str. A0248] gi|296325096|gb|ADH08024.1| cold shock protein [Bacillus thuringiensis BMB171] gi|298724998|gb|EFI65658.1| cold shock protein CspB [Bacillus cereus SJ1] gi|300377194|gb|ADK06098.1| cold shock protein [Bacillus cereus biovar anthracis str. CI] gi|324327436|gb|ADY22696.1| cold shock protein CspB [Bacillus thuringiensis serovar finitimus YBT-020] gi|326941254|gb|AEA17150.1| cold shock protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 66 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNR 56 Query: 62 NGKYSAENLK 71 + + N K Sbjct: 57 GPQATNVNKK 66 >gi|300121901|emb|CBK22475.2| Cold-shock protein DNA-binding [Blastocystis hominis] Length = 101 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V+ G KW+N KGYGFI P+ ++ D+F+H+S++ S+G L EG+ V +D + Sbjct: 22 VYTGKCKWFNNKKGYGFIIPDPGSDLTTDIFVHQSSIKSSGFRFLKEGESVEFDVT-DGQ 80 Query: 62 NGKYSAEN 69 GK + Sbjct: 81 KGKVATNV 88 >gi|15802236|ref|NP_288259.1| cold shock-like protein CspC [Escherichia coli O157:H7 EDL933] gi|15831787|ref|NP_310560.1| cold shock-like protein CspC [Escherichia coli O157:H7 str. Sakai] gi|16129777|ref|NP_416337.1| stress protein, member of the CspA-family [Escherichia coli str. K-12 substr. MG1655] gi|16760726|ref|NP_456343.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765178|ref|NP_460793.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|26248085|ref|NP_754125.1| cold shock-like protein CspC [Escherichia coli CFT073] gi|29141516|ref|NP_804858.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30062921|ref|NP_837092.1| cold shock-like protein CspC [Shigella flexneri 2a str. 2457T] gi|56413244|ref|YP_150319.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180401|ref|YP_216818.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|74311864|ref|YP_310283.1| cold shock-like protein CspC [Shigella sonnei Ss046] gi|82777211|ref|YP_403560.1| cold shock-like protein CspC [Shigella dysenteriae Sd197] gi|89108662|ref|AP_002442.1| stress protein, member of the CspA-family [Escherichia coli str. K-12 substr. W3110] gi|91211042|ref|YP_541028.1| cold shock-like protein CspC [Escherichia coli UTI89] gi|110641940|ref|YP_669670.1| cold shock-like protein CspC [Escherichia coli 536] gi|110805383|ref|YP_688903.1| cold shock-like protein CspC [Shigella flexneri 5 str. 8401] gi|146312039|ref|YP_001177113.1| cold shock-like protein CspC [Enterobacter sp. 638] gi|152970887|ref|YP_001335996.1| cold shock-like protein CspC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157145410|ref|YP_001452730.1| cold shock-like protein CspC [Citrobacter koseri ATCC BAA-895] gi|157157347|ref|YP_001463124.1| cold shock-like protein CspC [Escherichia coli E24377A] gi|157161289|ref|YP_001458607.1| cold shock-like protein CspC [Escherichia coli HS] gi|161503039|ref|YP_001570151.1| cold shock-like protein CspC [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161613652|ref|YP_001587617.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553480|ref|ZP_02347229.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993785|ref|ZP_02574878.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234267|ref|ZP_02659325.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168241432|ref|ZP_02666364.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259923|ref|ZP_02681896.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462668|ref|ZP_02696599.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820589|ref|ZP_02832589.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|170081478|ref|YP_001730798.1| CspA family stress protein [Escherichia coli str. K-12 substr. DH10B] gi|170682897|ref|YP_001743423.1| cold shock-like protein CspC [Escherichia coli SMS-3-5] gi|170769370|ref|ZP_02903823.1| cold shock protein CspC [Escherichia albertii TW07627] gi|170770188|ref|ZP_02904641.1| cold shock protein CspC [Escherichia albertii TW07627] gi|187733001|ref|YP_001880620.1| cold shock-like protein CspC [Shigella boydii CDC 3083-94] gi|188492990|ref|ZP_03000260.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|188533664|ref|YP_001907461.1| cold shock-like protein CspC [Erwinia tasmaniensis Et1/99] gi|189403500|ref|ZP_02795809.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC4486] gi|189404552|ref|ZP_02790213.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC4501] gi|189405077|ref|ZP_02813248.2| cold shock protein CspC [Escherichia coli O157:H7 str. EC869] gi|191171767|ref|ZP_03033314.1| cold shock protein CspC [Escherichia coli F11] gi|194430509|ref|ZP_03062983.1| cold shock protein CspC [Escherichia coli B171] gi|194434939|ref|ZP_03067183.1| cold shock protein CspC [Shigella dysenteriae 1012] gi|194446619|ref|YP_002041093.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447468|ref|YP_002045883.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471139|ref|ZP_03077123.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735301|ref|YP_002114871.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195940304|ref|ZP_03085686.1| cold shock-like protein CspC [Escherichia coli O157:H7 str. EC4024] gi|197247963|ref|YP_002146187.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265795|ref|ZP_03165869.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362170|ref|YP_002141807.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245948|ref|YP_002215303.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200391118|ref|ZP_03217729.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205352499|ref|YP_002226300.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206580814|ref|YP_002237792.1| cold shock protein CspC [Klebsiella pneumoniae 342] gi|207856657|ref|YP_002243308.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208810722|ref|ZP_03252598.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4206] gi|208816517|ref|ZP_03257637.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4045] gi|208819312|ref|ZP_03259632.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4042] gi|209397128|ref|YP_002270903.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4115] gi|209919188|ref|YP_002293272.1| cold shock-like protein CspC [Escherichia coli SE11] gi|213028972|ref|ZP_03343419.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213162944|ref|ZP_03348654.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420305|ref|ZP_03353371.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424204|ref|ZP_03357069.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581262|ref|ZP_03363088.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213620853|ref|ZP_03373636.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649656|ref|ZP_03379709.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855888|ref|ZP_03384128.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|215487035|ref|YP_002329466.1| cold shock-like protein CspC [Escherichia coli O127:H6 str. E2348/69] gi|217328839|ref|ZP_03444920.1| cold shock protein CspC [Escherichia coli O157:H7 str. TW14588] gi|218548618|ref|YP_002382409.1| cold shock-like protein CspC [Escherichia fergusonii ATCC 35469] gi|218554396|ref|YP_002387309.1| cold shock-like protein CspC [Escherichia coli IAI1] gi|218558685|ref|YP_002391598.1| cold shock-like protein CspC [Escherichia coli S88] gi|218689759|ref|YP_002397971.1| cold shock-like protein CspC [Escherichia coli ED1a] gi|218695386|ref|YP_002403053.1| cold shock-like protein CspC [Escherichia coli 55989] gi|218699608|ref|YP_002407237.1| cold shock-like protein CspC [Escherichia coli IAI39] gi|218705322|ref|YP_002412841.1| cold shock-like protein CspC [Escherichia coli UMN026] gi|224583673|ref|YP_002637471.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|227885751|ref|ZP_04003556.1| cold shock family protein CspC [Escherichia coli 83972] gi|237705773|ref|ZP_04536254.1| cold shock protein [Escherichia sp. 3_2_53FAA] gi|237731860|ref|ZP_04562341.1| cold shock-like protein cspC [Citrobacter sp. 30_2] gi|238895399|ref|YP_002920134.1| cold shock-like protein CspC [Klebsiella pneumoniae NTUH-K2044] gi|238901037|ref|YP_002926833.1| stress protein, member of the CspA-family [Escherichia coli BW2952] gi|238912099|ref|ZP_04655936.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|253773223|ref|YP_003036054.1| cold shock-like protein CspC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161882|ref|YP_003044990.1| cold shock-like protein CspC [Escherichia coli B str. REL606] gi|254793446|ref|YP_003078283.1| cold shock-like protein CspC [Escherichia coli O157:H7 str. TW14359] gi|256017989|ref|ZP_05431854.1| cold shock-like protein CspC [Shigella sp. D9] gi|256022513|ref|ZP_05436378.1| cold shock-like protein CspC [Escherichia sp. 4_1_40B] gi|259908254|ref|YP_002648610.1| cold shock-like protein CspC [Erwinia pyrifoliae Ep1/96] gi|260844168|ref|YP_003221946.1| stress protein CspC [Escherichia coli O103:H2 str. 12009] gi|260855683|ref|YP_003229574.1| stress protein CspC [Escherichia coli O26:H11 str. 11368] gi|260868343|ref|YP_003234745.1| stress protein CspC [Escherichia coli O111:H- str. 11128] gi|261227680|ref|ZP_05941961.1| stress protein, member of the CspA-family [Escherichia coli O157:H7 str. FRIK2000] gi|261258154|ref|ZP_05950687.1| Cold shock-like protein cspC [Escherichia coli O157:H7 str. FRIK966] gi|261340207|ref|ZP_05968065.1| conserved domain protein [Enterobacter cancerogenus ATCC 35316] gi|262041935|ref|ZP_06015118.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|283832781|ref|ZP_06352522.1| conserved domain protein [Citrobacter youngae ATCC 29220] gi|288934716|ref|YP_003438775.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|289804519|ref|ZP_06535148.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289825969|ref|ZP_06545128.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|290508848|ref|ZP_06548219.1| cold shock protein CspG [Klebsiella sp. 1_1_55] gi|291283004|ref|YP_003499822.1| hypothetical protein G2583_2272 [Escherichia coli O55:H7 str. CB9615] gi|292488490|ref|YP_003531374.1| cold shock-like protein CspC [Erwinia amylovora CFBP1430] gi|292899677|ref|YP_003539046.1| cold shock-like protein [Erwinia amylovora ATCC 49946] gi|293405319|ref|ZP_06649311.1| cold shock protein CspG [Escherichia coli FVEC1412] gi|293410131|ref|ZP_06653707.1| cold shock protein cspC [Escherichia coli B354] gi|293415138|ref|ZP_06657781.1| cold shock protein CspG [Escherichia coli B185] gi|293446195|ref|ZP_06662617.1| cold shock protein CspG [Escherichia coli B088] gi|296101843|ref|YP_003611989.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|298380961|ref|ZP_06990560.1| cold shock-like protein cspC [Escherichia coli FVEC1302] gi|300717038|ref|YP_003741841.1| cold shock protein [Erwinia billingiae Eb661] gi|300816289|ref|ZP_07096511.1| cold shock protein CspE [Escherichia coli MS 107-1] gi|300825532|ref|ZP_07105593.1| cold shock protein CspE [Escherichia coli MS 119-7] gi|300899064|ref|ZP_07117350.1| cold shock protein CspE [Escherichia coli MS 198-1] gi|300904686|ref|ZP_07122520.1| cold shock protein CspE [Escherichia coli MS 84-1] gi|300917606|ref|ZP_07134258.1| cold shock protein CspE [Escherichia coli MS 115-1] gi|300924891|ref|ZP_07140823.1| cold shock protein CspE [Escherichia coli MS 182-1] gi|300928850|ref|ZP_07144356.1| cold shock protein CspE [Escherichia coli MS 187-1] gi|300938827|ref|ZP_07153537.1| cold shock protein CspE [Escherichia coli MS 21-1] gi|300951435|ref|ZP_07165274.1| cold shock protein CspE [Escherichia coli MS 116-1] gi|300956672|ref|ZP_07168948.1| cold shock protein CspE [Escherichia coli MS 175-1] gi|300981990|ref|ZP_07175834.1| cold shock protein CspE [Escherichia coli MS 200-1] gi|300994227|ref|ZP_07180784.1| cold shock protein CspE [Escherichia coli MS 45-1] gi|301020113|ref|ZP_07184242.1| cold shock protein CspE [Escherichia coli MS 196-1] gi|301026567|ref|ZP_07189993.1| cold shock protein CspE [Escherichia coli MS 69-1] gi|301050830|ref|ZP_07197684.1| cold shock protein CspE [Escherichia coli MS 185-1] gi|301305922|ref|ZP_07212005.1| cold shock protein CspE [Escherichia coli MS 124-1] gi|301327584|ref|ZP_07220801.1| cold shock protein CspE [Escherichia coli MS 78-1] gi|301645665|ref|ZP_07245593.1| cold shock protein CspE [Escherichia coli MS 146-1] gi|306814930|ref|ZP_07449086.1| Cold shock-like protein cspC [Escherichia coli NC101] gi|307138483|ref|ZP_07497839.1| Cold shock-like protein cspC [Escherichia coli H736] gi|307314098|ref|ZP_07593710.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|309788269|ref|ZP_07682873.1| cold shock-like protein cspI [Shigella dysenteriae 1617] gi|309794201|ref|ZP_07688625.1| cold shock protein CspE [Escherichia coli MS 145-7] gi|311279278|ref|YP_003941509.1| cold-shock DNA-binding domain-containing protein [Enterobacter cloacae SCF1] gi|312967022|ref|ZP_07781240.1| cold shock-like protein cspI [Escherichia coli 2362-75] gi|312969860|ref|ZP_07784043.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|317048459|ref|YP_004116107.1| cold-shock DNA-binding domain-containing protein [Pantoea sp. At-9b] gi|330002884|ref|ZP_08304436.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3] gi|331642433|ref|ZP_08343568.1| conserved domain protein [Escherichia coli H736] gi|331647319|ref|ZP_08348413.1| conserved domain protein [Escherichia coli M605] gi|331653228|ref|ZP_08354233.1| conserved domain protein [Escherichia coli M718] gi|331657867|ref|ZP_08358829.1| conserved domain protein [Escherichia coli TA206] gi|331663313|ref|ZP_08364223.1| conserved domain protein [Escherichia coli TA143] gi|331668514|ref|ZP_08369362.1| conserved domain protein [Escherichia coli TA271] gi|331673355|ref|ZP_08374123.1| conserved domain protein [Escherichia coli TA280] gi|331677700|ref|ZP_08378375.1| conserved domain protein [Escherichia coli H591] gi|331683325|ref|ZP_08383926.1| conserved domain protein [Escherichia coli H299] gi|332279025|ref|ZP_08391438.1| cold shock protein [Shigella sp. D9] gi|76364245|sp|P0A9Y6|CSPC_ECOLI RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|76364246|sp|P0A9Y9|CSPC_SALTY RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|85687551|sp|P0A9Y8|CSPC_ECO57 RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|85687552|sp|P0A9Y7|CSPC_ECOL6 RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|85687553|sp|P0A9Z0|CSPC_SALTI RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|25296121|pir||AE0727 cold shock-like protein CspC [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|12515869|gb|AAG56812.1|AE005405_3 cold shock protein [Escherichia coli O157:H7 str. EDL933] gi|26108488|gb|AAN80690.1|AE016761_265 Cold shock-like protein cspC [Escherichia coli CFT073] gi|460698|dbj|BAA05854.1| CspC (MsmB) [Escherichia coli] gi|479005|gb|AAA23619.1| cold-shock protein [Escherichia coli] gi|1736467|dbj|BAA15634.1| stress protein, member of the CspA-family [Escherichia coli str. K12 substr. W3110] gi|1788126|gb|AAC74893.1| stress protein, member of the CspA-family [Escherichia coli str. K-12 substr. MG1655] gi|13362000|dbj|BAB35956.1| cold shock protein [Escherichia coli O157:H7 str. Sakai] gi|16420370|gb|AAL20752.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503023|emb|CAD05519.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi] gi|29137143|gb|AAO68707.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30041170|gb|AAP16899.1| cold shock protein [Shigella flexneri 2a str. 2457T] gi|56127501|gb|AAV77007.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128034|gb|AAX65737.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|73855341|gb|AAZ88048.1| cold shock protein [Shigella sonnei Ss046] gi|81241359|gb|ABB62069.1| cold shock protein [Shigella dysenteriae Sd197] gi|91072616|gb|ABE07497.1| cold shock protein CspC [Escherichia coli UTI89] gi|110343532|gb|ABG69769.1| cold shock-like protein CspC [Escherichia coli 536] gi|110614931|gb|ABF03598.1| cold shock protein [Shigella flexneri 5 str. 8401] gi|145318915|gb|ABP61062.1| cold-shock DNA-binding protein family [Enterobacter sp. 638] gi|150955736|gb|ABR77766.1| cold shock protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157066969|gb|ABV06224.1| cold shock protein CspC [Escherichia coli HS] gi|157079377|gb|ABV19085.1| cold shock protein CspC [Escherichia coli E24377A] gi|157082615|gb|ABV12293.1| hypothetical protein CKO_01152 [Citrobacter koseri ATCC BAA-895] gi|160864386|gb|ABX21009.1| hypothetical protein SARI_01103 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161363016|gb|ABX66784.1| hypothetical protein SPAB_01376 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|169889313|gb|ACB03020.1| stress protein, member of the CspA-family [Escherichia coli str. K-12 substr. DH10B] gi|170120949|gb|EDS89880.1| cold shock protein CspC [Escherichia albertii TW07627] gi|170121694|gb|EDS90625.1| cold shock protein CspC [Escherichia albertii TW07627] gi|170520615|gb|ACB18793.1| cold shock protein CspC [Escherichia coli SMS-3-5] gi|187429993|gb|ACD09267.1| cold shock protein CspC [Shigella boydii CDC 3083-94] gi|188028706|emb|CAO96568.1| Cold shock protein [Erwinia tasmaniensis Et1/99] gi|188488189|gb|EDU63292.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|189360403|gb|EDU78822.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4486] gi|189364970|gb|EDU83386.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4501] gi|189371934|gb|EDU90350.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC869] gi|190908097|gb|EDV67689.1| cold shock protein CspC [Escherichia coli F11] gi|194405282|gb|ACF65504.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405772|gb|ACF65991.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194411450|gb|EDX27798.1| cold shock protein CspC [Escherichia coli B171] gi|194416827|gb|EDX32952.1| cold shock protein CspC [Shigella dysenteriae 1012] gi|194457503|gb|EDX46342.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710803|gb|ACF90024.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634080|gb|EDX52432.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093647|emb|CAR59117.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211666|gb|ACH49063.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197244050|gb|EDY26670.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197940464|gb|ACH77797.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603563|gb|EDZ02109.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205272280|emb|CAR37158.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322083|gb|EDZ09922.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328182|gb|EDZ14946.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331766|gb|EDZ18530.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339519|gb|EDZ26283.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342665|gb|EDZ29429.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350669|gb|EDZ37300.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206569872|gb|ACI11648.1| cold shock protein CspC [Klebsiella pneumoniae 342] gi|206708460|emb|CAR32781.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208725238|gb|EDZ74945.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4206] gi|208730860|gb|EDZ79549.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4045] gi|208739435|gb|EDZ87117.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4042] gi|209158528|gb|ACI35961.1| cold shock protein CspC [Escherichia coli O157:H7 str. EC4115] gi|209767848|gb|ACI82236.1| cold shock protein [Escherichia coli] gi|209767850|gb|ACI82237.1| cold shock protein [Escherichia coli] gi|209767852|gb|ACI82238.1| cold shock protein [Escherichia coli] gi|209767854|gb|ACI82239.1| cold shock protein [Escherichia coli] gi|209767856|gb|ACI82240.1| cold shock protein [Escherichia coli] gi|209912447|dbj|BAG77521.1| cold shock protein [Escherichia coli SE11] gi|215265107|emb|CAS09495.1| stress protein, member of the CspA-family [Escherichia coli O127:H6 str. E2348/69] gi|217318186|gb|EEC26613.1| cold shock protein CspC [Escherichia coli O157:H7 str. TW14588] gi|218352118|emb|CAU97855.1| stress protein, member of the CspA-family [Escherichia coli 55989] gi|218356159|emb|CAQ88776.1| stress protein, member of the CspA-family [Escherichia fergusonii ATCC 35469] gi|218361164|emb|CAQ98747.1| stress protein, member of the CspA-family [Escherichia coli IAI1] gi|218365454|emb|CAR03181.1| stress protein, member of the CspA-family [Escherichia coli S88] gi|218369594|emb|CAR17363.1| stress protein, member of the CspA-family [Escherichia coli IAI39] gi|218427323|emb|CAR08218.2| stress protein, member of the CspA-family [Escherichia coli ED1a] gi|218432419|emb|CAR13310.1| stress protein, member of the CspA-family [Escherichia coli UMN026] gi|222033570|emb|CAP76311.1| Cold shock-like protein cspC [Escherichia coli LF82] gi|224468200|gb|ACN46030.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224963876|emb|CAX55379.1| Cold shock-like protein CspC [Erwinia pyrifoliae Ep1/96] gi|226900530|gb|EEH86789.1| cold shock protein [Escherichia sp. 3_2_53FAA] gi|226907399|gb|EEH93317.1| cold shock-like protein cspC [Citrobacter sp. 30_2] gi|227837324|gb|EEJ47790.1| cold shock family protein CspC [Escherichia coli 83972] gi|238547716|dbj|BAH64067.1| cold shock-like protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|238863580|gb|ACR65578.1| stress protein, member of the CspA-family [Escherichia coli BW2952] gi|242377543|emb|CAQ32298.1| stress protein, member of the CspA family; predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|253324267|gb|ACT28869.1| cold-shock DNA-binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973783|gb|ACT39454.1| stress protein, member of the CspA-family [Escherichia coli B str. REL606] gi|253977977|gb|ACT43647.1| stress protein, member of the CspA-family [Escherichia coli BL21(DE3)] gi|254592846|gb|ACT72207.1| stress protein, member of the CspA-family [Escherichia coli O157:H7 str. TW14359] gi|257754332|dbj|BAI25834.1| stress protein CspC [Escherichia coli O26:H11 str. 11368] gi|257759315|dbj|BAI30812.1| stress protein CspC [Escherichia coli O103:H2 str. 12009] gi|257764699|dbj|BAI36194.1| stress protein CspC [Escherichia coli O111:H- str. 11128] gi|259040741|gb|EEW41829.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|260449056|gb|ACX39478.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|261247022|emb|CBG24839.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993798|gb|ACY88683.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|281178889|dbj|BAI55219.1| cold shock protein [Escherichia coli SE15] gi|281600822|gb|ADA73806.1| Cold shock-like protein cspC [Shigella flexneri 2002017] gi|283478185|emb|CAY74101.1| Cold shock-like protein cspC (CSP-C) [Erwinia pyrifoliae DSM 12163] gi|284921742|emb|CBG34814.1| cold shock-like protein CspC [Escherichia coli 042] gi|288317723|gb|EFC56661.1| conserved domain protein [Enterobacter cancerogenus ATCC 35316] gi|288889425|gb|ADC57743.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|289152142|gb|ADC84001.1| cold shock-like protein [Escherichia coli] gi|289152144|gb|ADC84002.1| cold shock-like protein [Escherichia coli] gi|289152146|gb|ADC84003.1| cold shock-like protein [Escherichia coli] gi|289152148|gb|ADC84004.1| cold shock-like protein [Escherichia coli] gi|289152150|gb|ADC84005.1| cold shock-like protein [Escherichia coli] gi|289152152|gb|ADC84006.1| cold shock-like protein [Escherichia coli] gi|289152154|gb|ADC84007.1| cold shock-like protein [Escherichia coli] gi|289152156|gb|ADC84008.1| cold shock-like protein [Escherichia coli] gi|289152160|gb|ADC84010.1| cold shock-like protein [Escherichia coli] gi|289152162|gb|ADC84011.1| cold shock-like protein [Escherichia coli] gi|289152164|gb|ADC84012.1| cold shock-like protein [Escherichia coli] gi|289152166|gb|ADC84013.1| cold shock-like protein [Escherichia coli] gi|289152168|gb|ADC84014.1| cold shock-like protein [Escherichia coli] gi|289152170|gb|ADC84015.1| cold shock-like protein [Escherichia coli] gi|289152172|gb|ADC84016.1| cold shock-like protein [Escherichia coli] gi|289152174|gb|ADC84017.1| cold shock-like protein [Escherichia coli] gi|289152176|gb|ADC84018.1| cold shock-like protein [Escherichia coli] gi|289152178|gb|ADC84019.1| cold shock-like protein [Escherichia coli] gi|289152180|gb|ADC84020.1| cold shock-like protein [Escherichia coli] gi|289152182|gb|ADC84021.1| cold shock-like protein [Escherichia coli] gi|289152184|gb|ADC84022.1| cold shock-like protein [Escherichia coli] gi|289152186|gb|ADC84023.1| cold shock-like protein [Escherichia coli] gi|289152188|gb|ADC84024.1| cold shock-like protein [Escherichia coli] gi|289152190|gb|ADC84025.1| cold shock-like protein [Escherichia coli] gi|289152192|gb|ADC84026.1| cold shock-like protein [Escherichia coli] gi|289152194|gb|ADC84027.1| cold shock-like protein [Escherichia coli] gi|289152196|gb|ADC84028.1| cold shock-like protein [Escherichia coli] gi|289152198|gb|ADC84029.1| cold shock-like protein [Escherichia coli] gi|289152200|gb|ADC84030.1| cold shock-like protein [Escherichia coli] gi|289152202|gb|ADC84031.1| cold shock-like protein [Escherichia coli] gi|289778242|gb|EFD86239.1| cold shock protein CspG [Klebsiella sp. 1_1_55] gi|290762877|gb|ADD56838.1| hypothetical protein G2583_2272 [Escherichia coli O55:H7 str. CB9615] gi|291072468|gb|EFE10577.1| conserved domain protein [Citrobacter youngae ATCC 29220] gi|291199525|emb|CBJ46642.1| cold shock-like protein [Erwinia amylovora ATCC 49946] gi|291323025|gb|EFE62453.1| cold shock protein CspG [Escherichia coli B088] gi|291427527|gb|EFF00554.1| cold shock protein CspG [Escherichia coli FVEC1412] gi|291432786|gb|EFF05765.1| cold shock protein CspG [Escherichia coli B185] gi|291470599|gb|EFF13083.1| cold shock protein cspC [Escherichia coli B354] gi|291553921|emb|CBA20966.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora CFBP1430] gi|294492772|gb|ADE91528.1| cold shock protein CspC [Escherichia coli IHE3034] gi|295056302|gb|ADF61040.1| Cold shock-like protein cspC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295095573|emb|CBK84663.1| Cold shock proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] gi|298278403|gb|EFI19917.1| cold shock-like protein cspC [Escherichia coli FVEC1302] gi|299062874|emb|CAX59994.1| cold shock protein [Erwinia billingiae Eb661] gi|299881920|gb|EFI90131.1| cold shock protein CspE [Escherichia coli MS 196-1] gi|300297519|gb|EFJ53904.1| cold shock protein CspE [Escherichia coli MS 185-1] gi|300307364|gb|EFJ61884.1| cold shock protein CspE [Escherichia coli MS 200-1] gi|300316550|gb|EFJ66334.1| cold shock protein CspE [Escherichia coli MS 175-1] gi|300357308|gb|EFJ73178.1| cold shock protein CspE [Escherichia coli MS 198-1] gi|300395440|gb|EFJ78978.1| cold shock protein CspE [Escherichia coli MS 69-1] gi|300403385|gb|EFJ86923.1| cold shock protein CspE [Escherichia coli MS 84-1] gi|300406355|gb|EFJ89893.1| cold shock protein CspE [Escherichia coli MS 45-1] gi|300415174|gb|EFJ98484.1| cold shock protein CspE [Escherichia coli MS 115-1] gi|300418941|gb|EFK02252.1| cold shock protein CspE [Escherichia coli MS 182-1] gi|300449309|gb|EFK12929.1| cold shock protein CspE [Escherichia coli MS 116-1] gi|300456260|gb|EFK19753.1| cold shock protein CspE [Escherichia coli MS 21-1] gi|300463140|gb|EFK26633.1| cold shock protein CspE [Escherichia coli MS 187-1] gi|300522015|gb|EFK43084.1| cold shock protein CspE [Escherichia coli MS 119-7] gi|300530979|gb|EFK52041.1| cold shock protein CspE [Escherichia coli MS 107-1] gi|300838848|gb|EFK66608.1| cold shock protein CspE [Escherichia coli MS 124-1] gi|300845833|gb|EFK73593.1| cold shock protein CspE [Escherichia coli MS 78-1] gi|301076094|gb|EFK90900.1| cold shock protein CspE [Escherichia coli MS 146-1] gi|301158361|emb|CBW17860.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|305851578|gb|EFM52031.1| Cold shock-like protein cspC [Escherichia coli NC101] gi|306906236|gb|EFN36753.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|307553841|gb|ADN46616.1| cold shock-like protein CspC [Escherichia coli ABU 83972] gi|307626698|gb|ADN71002.1| Cold shock-like protein cspC [Escherichia coli UM146] gi|308122106|gb|EFO59368.1| cold shock protein CspE [Escherichia coli MS 145-7] gi|308748473|gb|ADO48225.1| cold-shock DNA-binding domain protein [Enterobacter cloacae SCF1] gi|308923651|gb|EFP69154.1| cold shock-like protein cspI [Shigella dysenteriae 1617] gi|310338145|gb|EFQ03234.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|310767829|gb|ADP12779.1| Cold shock-like protein cspC [Erwinia sp. Ejp617] gi|312172634|emb|CBX80890.1| Cold shock-like protein cspC (CSP-C) [Erwinia amylovora ATCC BAA-2158] gi|312288486|gb|EFR16388.1| cold shock-like protein cspI [Escherichia coli 2362-75] gi|312912826|dbj|BAJ36800.1| cold shock protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312946419|gb|ADR27246.1| cold shock-like protein CspC [Escherichia coli O83:H1 str. NRG 857C] gi|313649142|gb|EFS13576.1| cold shock-like protein cspI [Shigella flexneri 2a str. 2457T] gi|315061126|gb|ADT75453.1| stress protein, member of the CspA-family [Escherichia coli W] gi|315136465|dbj|BAJ43624.1| cold shock-like protein cspC [Escherichia coli DH1] gi|315257366|gb|EFU37334.1| cold shock protein CspE [Escherichia coli MS 85-1] gi|315286527|gb|EFU45962.1| cold shock protein CspE [Escherichia coli MS 110-3] gi|315290383|gb|EFU49759.1| cold shock protein CspE [Escherichia coli MS 153-1] gi|315299954|gb|EFU59192.1| cold shock protein CspE [Escherichia coli MS 16-3] gi|316950076|gb|ADU69551.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b] gi|320085656|emb|CBY95434.1| Cold shock-like protein cspE CSP-E [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|320173186|gb|EFW48398.1| Cold shock protein CspC [Shigella dysenteriae CDC 74-1112] gi|320181137|gb|EFW56056.1| Cold shock protein CspC [Shigella boydii ATCC 9905] gi|320185016|gb|EFW59797.1| Cold shock protein CspC [Shigella flexneri CDC 796-83] gi|320188522|gb|EFW63184.1| Cold shock protein CspC [Escherichia coli O157:H7 str. EC1212] gi|320194464|gb|EFW69095.1| Cold shock protein CspC [Escherichia coli WV_060327] gi|320198003|gb|EFW72611.1| Cold shock protein CspC [Escherichia coli EC4100B] gi|320641674|gb|EFX11062.1| cold shock-like protein cspc [Escherichia coli O157:H7 str. G5101] gi|320647033|gb|EFX15866.1| cold shock-like protein cspc [Escherichia coli O157:H- str. 493-89] gi|320652316|gb|EFX20614.1| cold shock-like protein cspc [Escherichia coli O157:H- str. H 2687] gi|320657918|gb|EFX25680.1| cold shock-like protein cspc [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658491|gb|EFX26185.1| cold shock-like protein cspc [Escherichia coli O55:H7 str. USDA 5905] gi|320668389|gb|EFX35216.1| cold shock-like protein cspc [Escherichia coli O157:H7 str. LSU-61] gi|321224470|gb|EFX49533.1| Cold shock protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616832|gb|EFY13740.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618071|gb|EFY14963.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625742|gb|EFY22561.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626192|gb|EFY23002.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633798|gb|EFY30538.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638952|gb|EFY35645.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640770|gb|EFY37420.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644157|gb|EFY40702.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649229|gb|EFY45667.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655388|gb|EFY51696.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660856|gb|EFY57087.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662847|gb|EFY59054.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668031|gb|EFY64190.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674207|gb|EFY70301.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675438|gb|EFY71512.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683147|gb|EFY79163.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686841|gb|EFY82819.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714876|gb|EFZ06447.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130112|gb|ADX17542.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323152935|gb|EFZ39204.1| cold shock-like protein cspI [Escherichia coli EPECa14] gi|323175099|gb|EFZ60713.1| cold shock-like protein cspI [Escherichia coli LT-68] gi|323180603|gb|EFZ66148.1| cold shock-like protein cspI [Escherichia coli 1180] gi|323186429|gb|EFZ71777.1| cold shock-like protein cspI [Escherichia coli 1357] gi|323186827|gb|EFZ72146.1| cold shock-like protein cspI [Escherichia coli RN587/1] gi|323195267|gb|EFZ80447.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199160|gb|EFZ84255.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203311|gb|EFZ88338.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207416|gb|EFZ92364.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213768|gb|EFZ98550.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217399|gb|EGA02118.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223230|gb|EGA07571.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224674|gb|EGA08947.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231422|gb|EGA15535.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235862|gb|EGA19941.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240431|gb|EGA24474.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245324|gb|EGA29324.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246691|gb|EGA30663.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253546|gb|EGA37374.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258076|gb|EGA41754.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259373|gb|EGA43012.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266797|gb|EGA50283.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269003|gb|EGA52459.1| Cold shock-like protein cspC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323378298|gb|ADX50566.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323937081|gb|EGB33361.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1520] gi|323940511|gb|EGB36702.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323948292|gb|EGB44280.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323952324|gb|EGB48197.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H252] gi|323956452|gb|EGB52194.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H263] gi|323961877|gb|EGB57476.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H489] gi|323968590|gb|EGB63996.1| cold-shock DNA-binding domain-containing protein [Escherichia coli M863] gi|323972670|gb|EGB67873.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|323977994|gb|EGB73080.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TW10509] gi|324007189|gb|EGB76408.1| cold shock protein CspE [Escherichia coli MS 57-2] gi|324011600|gb|EGB80819.1| cold shock protein CspE [Escherichia coli MS 60-1] gi|324018044|gb|EGB87263.1| cold shock protein CspE [Escherichia coli MS 117-3] gi|324113559|gb|EGC07534.1| cold-shock DNA-binding domain-containing protein [Escherichia fergusonii B253] gi|324118883|gb|EGC12772.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1167] gi|325497031|gb|EGC94890.1| cold shock-like protein CspC [Escherichia fergusonii ECD227] gi|326342201|gb|EGD65982.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1044] gi|326343751|gb|EGD67513.1| Cold shock protein CspC [Escherichia coli O157:H7 str. 1125] gi|326627557|gb|EGE33900.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|327252944|gb|EGE64598.1| cold shock-like protein cspI [Escherichia coli STEC_7v] gi|328537175|gb|EGF63445.1| cold shock-like protein CspE [Klebsiella sp. MS 92-3] gi|330911630|gb|EGH40140.1| cold shock protein CspC [Escherichia coli AA86] gi|331039231|gb|EGI11451.1| conserved domain protein [Escherichia coli H736] gi|331044102|gb|EGI16238.1| conserved domain protein [Escherichia coli M605] gi|331049326|gb|EGI21398.1| conserved domain protein [Escherichia coli M718] gi|331056115|gb|EGI28124.1| conserved domain protein [Escherichia coli TA206] gi|331059112|gb|EGI31089.1| conserved domain protein [Escherichia coli TA143] gi|331063708|gb|EGI35619.1| conserved domain protein [Escherichia coli TA271] gi|331069553|gb|EGI40940.1| conserved domain protein [Escherichia coli TA280] gi|331074160|gb|EGI45480.1| conserved domain protein [Escherichia coli H591] gi|331079540|gb|EGI50737.1| conserved domain protein [Escherichia coli H299] gi|332089944|gb|EGI95044.1| cold shock-like protein cspI [Shigella boydii 5216-82] gi|332093283|gb|EGI98342.1| cold shock-like protein cspI [Shigella dysenteriae 155-74] gi|332096604|gb|EGJ01598.1| cold shock-like protein cspI [Shigella boydii 3594-74] gi|332101377|gb|EGJ04723.1| cold shock protein [Shigella sp. D9] gi|332343548|gb|AEE56882.1| cold shock-like protein CspI [Escherichia coli UMNK88] gi|332760591|gb|EGJ90880.1| cold shock-like protein cspI [Shigella flexneri 2747-71] gi|332762433|gb|EGJ92698.1| cold shock-like protein cspI [Shigella flexneri 4343-70] gi|332762911|gb|EGJ93165.1| cold shock-like protein cspI [Shigella flexneri K-671] gi|332767108|gb|EGJ97303.1| cold shock protein [Shigella flexneri 2930-71] gi|332988724|gb|AEF07707.1| cold shock-like protein CspC [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] gi|333003646|gb|EGK23182.1| cold shock-like protein cspI [Shigella flexneri VA-6] gi|333004280|gb|EGK23811.1| cold shock-like protein cspI [Shigella flexneri K-218] gi|333006745|gb|EGK26242.1| cold shock-like protein cspI [Shigella flexneri K-272] gi|333018379|gb|EGK37678.1| cold shock-like protein cspI [Shigella flexneri K-304] gi|333018661|gb|EGK37954.1| cold shock-like protein cspI [Shigella flexneri K-227] Length = 69 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 61 P-AAVNVTAI 69 >gi|242239458|ref|YP_002987639.1| cold shock-like protein CspC [Dickeya dadantii Ech703] gi|242131515|gb|ACS85817.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] Length = 69 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGTGFKTLAEGQNVEFEI-QDGQKG 60 Query: 64 KYSAENLKLV 73 SA N+ + Sbjct: 61 P-SAVNVTAL 69 >gi|218297043|ref|ZP_03497720.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23] gi|218242598|gb|EED09135.1| cold-shock DNA-binding domain protein [Thermus aquaticus Y51MC23] Length = 68 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI E G DVF+H +A+ + G L EG+ V ++ Sbjct: 1 MKKGTVKWFNAEKGYGFIQQE----EGPDVFVHFTAIEADGFRTLNEGEHVEFEVEPGRG 56 Query: 62 NGKYSAENLKLV 73 A+ ++ + Sbjct: 57 GKGPQAKKVRRI 68 >gi|297171013|gb|ADI22027.1| cold shock proteins [uncultured myxobacterium HF0200_05J13] Length = 69 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P G G+DVF+H S + G L EGQ V Y+ + +D Sbjct: 1 MLTGTVKWFNNKKGFGFILPAG---GGEDVFVHFSVIEGDGFKTLAEGQGVEYELMDSD- 56 Query: 62 NGKYSAEN 69 G +A Sbjct: 57 KGMRAAVV 64 >gi|294637324|ref|ZP_06715621.1| conserved domain protein [Edwardsiella tarda ATCC 23685] gi|291089507|gb|EFE22068.1| conserved domain protein [Edwardsiella tarda ATCC 23685] Length = 71 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + V+N G Sbjct: 6 TGSVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNEFRTLDEGQKVEFS-VENGPKG 61 Query: 64 KYSAENLKL 72 + + + Sbjct: 62 PSAVNVVAI 70 >gi|255531845|ref|YP_003092217.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366] gi|255344829|gb|ACU04155.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366] Length = 68 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N KG+GFITPE + G D+F+H SA+A L EG V ++ ND Sbjct: 1 MRTTGKVKWFNSAKGFGFITPE---DGGKDIFVHFSAIAGDSFRELNEGDSVEFEL--ND 55 Query: 61 ANGKYSAENLKLV 73 A+N+ ++ Sbjct: 56 GKKGPEAQNVTVL 68 >gi|224826638|ref|ZP_03699739.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] gi|224601239|gb|EEG07421.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ G+D+F H S + + G +L EGQ V+Y + Sbjct: 1 METGTVKWFNDAKGFGFISPDA---GGEDLFAHFSEIRADGFKSLQEGQKVSYQSGKGQK 57 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 58 G--PQATNIQPL 67 >gi|187925980|ref|YP_001892325.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|241665465|ref|YP_002983824.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] gi|187727734|gb|ACD28898.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|240867492|gb|ACS65152.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+G G D+F H S + +G L +GQ V+++ Q Sbjct: 1 MATGTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|187477994|ref|YP_786018.1| cold shock-like protein [Bordetella avium 197N] gi|115422580|emb|CAJ49105.1| cold shock-like protein [Bordetella avium 197N] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFITPE G D+F H S + S G L E Q V+Y Sbjct: 1 METGVVKWFNAEKGYGFITPES---GGKDLFAHFSEIQSNGFKTLEENQRVSY-VTAMGP 56 Query: 62 NGKYSAENLKLV 73 G A ++L+ Sbjct: 57 KGPQ-ATKIQLI 67 >gi|22538234|ref|NP_689085.1| CSD family cold shock protein [Streptococcus agalactiae 2603V/R] gi|25012091|ref|NP_736486.1| hypothetical protein gbs2053 [Streptococcus agalactiae NEM316] gi|76788151|ref|YP_330629.1| cold shock protein [Streptococcus agalactiae A909] gi|77405153|ref|ZP_00782252.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae H36B] gi|77408137|ref|ZP_00784883.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae COH1] gi|77410841|ref|ZP_00787198.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae CJB111] gi|77414028|ref|ZP_00790199.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae 515] gi|22535146|gb|AAN00958.1|AE014286_21 cold shock protein, CSD family [Streptococcus agalactiae 2603V/R] gi|24413635|emb|CAD47712.1| Unknown [Streptococcus agalactiae NEM316] gi|76563208|gb|ABA45792.1| cold shock protein [Streptococcus agalactiae A909] gi|77159910|gb|EAO71050.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae 515] gi|77163059|gb|EAO74013.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae CJB111] gi|77173237|gb|EAO76360.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae COH1] gi|77176296|gb|EAO79066.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae H36B] gi|319745994|gb|EFV98276.1| cold shock protein CspA [Streptococcus agalactiae ATCC 13813] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI S+E+G DVF H S + G L EGQ VT+D Q+ Sbjct: 1 MTQGTVKWFNSEKGFGFI----SSETGTDVFAHFSEIKVDGFKTLEEGQKVTFDI-QDGQ 55 Query: 62 NGKYSAENLKLVP 74 G A N+ LV Sbjct: 56 RGPQ-ATNINLVK 67 >gi|291459899|ref|ZP_06599289.1| conserved domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291417240|gb|EFE90959.1| conserved domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 65 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW+N KGYGFI S E+G DVF+H S +A G +L EGQ V +D V + A G Sbjct: 2 RGTVKWFNNQKGYGFI----SDETGKDVFVHYSGLAGEGFKSLEEGQAVEFDVV-DGAKG 56 Query: 64 KYSAENLKL 72 + +KL Sbjct: 57 PQATNVVKL 65 >gi|119944855|ref|YP_942535.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119863459|gb|ABM02936.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFITPE E G+D+F+H S + + G L EGQ V Y+ + Sbjct: 1 MSIGTVKWFNADKGFGFITPE---EGGNDLFVHHSQIKTGGYATLNEGQKVEYEVGEGQK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--PCANNVVPL 67 >gi|242074456|ref|XP_002447164.1| hypothetical protein SORBIDRAFT_06g029650 [Sorghum bicolor] gi|241938347|gb|EES11492.1| hypothetical protein SORBIDRAFT_06g029650 [Sorghum bicolor] Length = 215 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFITP+ ++E D+F+H+S++ G +L EG+ V Y + +G Sbjct: 7 TGTVKWFNVDKGFGFITPDDASE---DLFVHQSSIKCDGYRSLKEGEAVEYTVG-SGQDG 62 Query: 64 KYSAENLK 71 + A ++ Sbjct: 63 RTKAMDVT 70 >gi|188591773|ref|YP_001796372.1| major cold shock protein [Cupriavidus taiwanensis] gi|170939168|emb|CAP64206.1| major cold shock protein [Cupriavidus taiwanensis LMG 19424] Length = 67 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFITP+ + G D+F H + AG +L EG V ++ Q Sbjct: 1 MATGIVKWFNSEKGYGFITPD---DGGKDLFAHYKEIQGAGFKSLEEGAKVEFEITQGMK 57 Query: 62 NGKYS 66 + S Sbjct: 58 GPQAS 62 >gi|54309149|ref|YP_130169.1| putative cold shock-like protein [Photobacterium profundum SS9] gi|90410345|ref|ZP_01218361.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] gi|46913581|emb|CAG20367.1| putative Cold shock-like protein [Photobacterium profundum SS9] gi|90328586|gb|EAS44870.1| putative Cold shock-like protein [Photobacterium profundum 3TCK] Length = 69 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+ G +L EGQ V++D Q G Sbjct: 5 TGIVKWFNDEKGFGFITQD---NGGADVFVHFRAITGDGFKSLAEGQKVSFDVEQGQ-KG 60 Query: 64 KYSAEN 69 +A Sbjct: 61 PQAANV 66 >gi|152988646|ref|YP_001347949.1| cold shock domain-containing protein CspD [Pseudomonas aeruginosa PA7] gi|150963804|gb|ABR85829.1| cold shock domain protein CspD [Pseudomonas aeruginosa PA7] Length = 90 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI EG E D+F H SA+ G L GQ V ++ +Q Sbjct: 1 MLSGKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPK 57 Query: 62 NGKYSAENL 70 A N+ Sbjct: 58 G--LHAINI 64 >gi|157371292|ref|YP_001479281.1| cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] gi|270262466|ref|ZP_06190737.1| hypothetical protein SOD_c00830 [Serratia odorifera 4Rx13] gi|293395496|ref|ZP_06639780.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] gi|320539351|ref|ZP_08039020.1| putative cold-shock DNA-binding domain-containing protein [Serratia symbiotica str. Tucson] gi|157323056|gb|ABV42153.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] gi|270043150|gb|EFA16243.1| hypothetical protein SOD_c00830 [Serratia odorifera 4Rx13] gi|291422180|gb|EFE95425.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] gi|320030476|gb|EFW12486.1| putative cold-shock DNA-binding domain-containing protein [Serratia symbiotica str. Tucson] Length = 70 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + +N A Sbjct: 4 MIKGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQNVQFSI-ENGA 59 Query: 62 NGKYSAENLKL 72 G +A + Sbjct: 60 KGPSAANVTAI 70 >gi|71892224|ref|YP_277957.1| cold shock-like protein CspC [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796330|gb|AAZ41081.1| cold shock-like protein [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 69 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP ++ DVF+H SA+ G L+EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---SDGSKDVFVHFSAIQGNGFKTLSEGQSVEFEI-QDGHKG 60 Query: 64 KYSAENLKLV 73 SA N+ + Sbjct: 61 P-SAVNVTAL 69 >gi|78222480|ref|YP_384227.1| cold-shock DNA-binding protein family protein [Geobacter metallireducens GS-15] gi|78193735|gb|ABB31502.1| cold-shock DNA-binding protein family [Geobacter metallireducens GS-15] Length = 66 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI E +G+DVF+H SA+ S G L EG+ VT+D V Sbjct: 1 MAQGKVKWFNDAKGFGFIEQE----NGEDVFVHFSAIQSDGFKTLAEGEAVTFDVVTGPK 56 Query: 62 NGKYSAENLK 71 A N+K Sbjct: 57 G--LQAANVK 64 >gi|330720265|gb|EGG98627.1| Cold shock protein [gamma proteobacterium IMCC2047] Length = 145 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G++KW+N KG+GFIT + SG+DVF+H +V G L EGQ V + V+ + Sbjct: 79 REQGTVKWFNVTKGFGFITRD----SGEDVFVHYRSVRGNGRRTLREGQRVLFKVVEGEK 134 Query: 62 NGKYSAENLKL 72 AE++ + Sbjct: 135 G--LQAEDVSV 143 >gi|302391175|ref|YP_003826995.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] gi|302203252|gb|ADL11930.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] Length = 67 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G++KW++ KGYGFI +E G+DVF+H SA+ G L +GQ V ++ V+ D Sbjct: 1 MILSGTVKWFDTKKGYGFIE----SEEGEDVFVHYSAIDEDGFKTLEDGQEVEFEIVEGD 56 Query: 61 ANGKYSAENLKL 72 G + +K+ Sbjct: 57 -KGPQAENVVKI 67 >gi|150398072|ref|YP_001328539.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150029587|gb|ABR61704.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] Length = 68 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKG+GFITPE G DVF+H SA+ G +L+EGQ V+Y+ Q+ Sbjct: 1 MATGTVKFFNGDKGFGFITPE---NGGTDVFVHVSALQEGG--SLSEGQRVSYEIGQDRK 55 Query: 62 NGKYSAENLKLV 73 GK AEN++++ Sbjct: 56 TGKSRAENVRVL 67 >gi|91775760|ref|YP_545516.1| cold-shock DNA-binding protein family protein [Methylobacillus flagellatus KT] gi|91709747|gb|ABE49675.1| cold-shock DNA-binding protein family [Methylobacillus flagellatus KT] Length = 67 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+P+ E GDD+F H S + ++G +L E V ++ Q A Sbjct: 1 MALGTVKWFNDAKGFGFISPD---EGGDDLFAHFSEIQTSGYKSLKENDRVQFEITQT-A 56 Query: 62 NGKYSAENLK 71 GK A N++ Sbjct: 57 KGKQ-ASNIQ 65 >gi|30020489|ref|NP_832120.1| cold shock protein [Bacillus cereus ATCC 14579] gi|206971664|ref|ZP_03232614.1| cold shock protein CspA [Bacillus cereus AH1134] gi|218231164|ref|YP_002367103.1| cold shock protein CspA [Bacillus cereus B4264] gi|218897365|ref|YP_002445776.1| cold shock protein CspA [Bacillus cereus G9842] gi|228901011|ref|ZP_04065222.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|228921113|ref|ZP_04084445.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228939557|ref|ZP_04102143.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952772|ref|ZP_04114844.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958674|ref|ZP_04120390.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228965387|ref|ZP_04126478.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228972409|ref|ZP_04133019.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979023|ref|ZP_04139386.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|229044152|ref|ZP_04191834.1| Cold shock protein cspB [Bacillus cereus AH676] gi|229069923|ref|ZP_04203203.1| Cold shock protein cspB [Bacillus cereus F65185] gi|229079591|ref|ZP_04212127.1| Cold shock protein cspB [Bacillus cereus Rock4-2] gi|229109840|ref|ZP_04239424.1| Cold shock protein cspB [Bacillus cereus Rock1-15] gi|229127796|ref|ZP_04256782.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4] gi|229144998|ref|ZP_04273393.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|229150609|ref|ZP_04278823.1| Cold shock protein cspB [Bacillus cereus m1550] gi|229178759|ref|ZP_04306122.1| Cold shock protein cspB [Bacillus cereus 172560W] gi|229190497|ref|ZP_04317494.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|296502953|ref|YP_003664653.1| cold shock protein [Bacillus thuringiensis BMB171] gi|49035523|sp|Q81DK5|CSPE_BACCR RecName: Full=Cold shock-like protein CspE gi|29896040|gb|AAP09321.1| Cold shock protein [Bacillus cereus ATCC 14579] gi|206733649|gb|EDZ50821.1| cold shock protein CspA [Bacillus cereus AH1134] gi|218159121|gb|ACK59113.1| cold shock protein CspA [Bacillus cereus B4264] gi|218544454|gb|ACK96848.1| cold shock protein CspA [Bacillus cereus G9842] gi|228592842|gb|EEK50664.1| Cold shock protein cspB [Bacillus cereus ATCC 10876] gi|228604698|gb|EEK62156.1| Cold shock protein cspB [Bacillus cereus 172560W] gi|228632696|gb|EEK89311.1| Cold shock protein cspB [Bacillus cereus m1550] gi|228638447|gb|EEK94882.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|228655561|gb|EEL11413.1| Cold shock protein cspB [Bacillus cereus BDRD-Cer4] gi|228673592|gb|EEL28852.1| Cold shock protein cspB [Bacillus cereus Rock1-15] gi|228703705|gb|EEL56155.1| Cold shock protein cspB [Bacillus cereus Rock4-2] gi|228713191|gb|EEL65086.1| Cold shock protein cspB [Bacillus cereus F65185] gi|228725177|gb|EEL76452.1| Cold shock protein cspB [Bacillus cereus AH676] gi|228780687|gb|EEM28902.1| Cold shock protein cspB [Bacillus thuringiensis Bt407] gi|228787284|gb|EEM35253.1| Cold shock protein cspB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794301|gb|EEM41816.1| Cold shock protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228800990|gb|EEM47891.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228806891|gb|EEM53438.1| Cold shock protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820100|gb|EEM66139.1| Cold shock protein cspB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228838529|gb|EEM83838.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228858608|gb|EEN03057.1| Cold shock protein cspB [Bacillus thuringiensis IBL 4222] gi|296324005|gb|ADH06933.1| cold shock protein [Bacillus thuringiensis BMB171] gi|326940103|gb|AEA15999.1| cold shock protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 67 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G+DVF+H SA+ G +L EGQ V+++ + + Sbjct: 1 MTLTGKVKWFNSEKGFGFIE----VADGNDVFVHFSAITGDGFKSLDEGQEVSFEVEEGN 56 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 57 -RGPQAKNVVKL 67 >gi|302552922|ref|ZP_07305264.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] gi|302470540|gb|EFL33633.1| cold shock domain-containing protein CspD [Streptomyces viridochromogenes DSM 40736] Length = 67 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ V++D Q Sbjct: 1 MATGTVKWFNAEKGFGFIEQEG---GGPDVFAHYSNIAAQGFRELLEGQKVSFDVAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|222099783|ref|YP_002534351.1| Cold-shock DNA-binding protein family [Thermotoga neapolitana DSM 4359] gi|221572173|gb|ACM22985.1| Cold-shock DNA-binding protein family [Thermotoga neapolitana DSM 4359] Length = 78 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW++ KGYGFIT E+G+D+F+H SA+ G L E + V +D Q Sbjct: 14 RGTVKWFDSKKGYGFIT----MENGEDIFVHWSAIQMDGFKTLRENEPVEFDVQQGTKG- 68 Query: 64 KYSAENLKLV 73 A N++ V Sbjct: 69 -PQAVNVRPV 77 >gi|329769588|ref|ZP_08260993.1| cold shock protein cspA [Gemella sanguinis M325] gi|328838540|gb|EGF88147.1| cold shock protein cspA [Gemella sanguinis M325] Length = 66 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI EG DVF+H S++ G L EG V + V+ A Sbjct: 1 MKQGTVKWFNEEKGFGFIAVEGE----KDVFVHFSSIQKEGFKTLKEGDKVEFS-VEEGA 55 Query: 62 NGKYSAENLKL 72 G +A + L Sbjct: 56 RGPQAANVVVL 66 >gi|118497319|ref|YP_898369.1| cold shock protein [Francisella tularensis subsp. novicida U112] gi|167627835|ref|YP_001678335.1| cold-shock DNA-binding domain-containing protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|195536005|ref|ZP_03079012.1| cold-shock' DNA-binding domain, putative [Francisella tularensis subsp. novicida FTE] gi|208779106|ref|ZP_03246452.1| cold-shock' DNA-binding domain protein, putative [Francisella novicida FTG] gi|241668393|ref|ZP_04755971.1| cold-shock DNA-binding domain-containing protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254372686|ref|ZP_04988175.1| hypothetical protein FTCG_00251 [Francisella tularensis subsp. novicida GA99-3549] gi|254374143|ref|ZP_04989625.1| hypothetical protein FTDG_00305 [Francisella novicida GA99-3548] gi|254876926|ref|ZP_05249636.1| cold shock protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|118423225|gb|ABK89615.1| cold shock protein, DNA-binding [Francisella novicida U112] gi|151570413|gb|EDN36067.1| hypothetical protein FTCG_00251 [Francisella novicida GA99-3549] gi|151571863|gb|EDN37517.1| hypothetical protein FTDG_00305 [Francisella novicida GA99-3548] gi|167597836|gb|ABZ87834.1| putative cold-shock DNA-binding domain protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|194372482|gb|EDX27193.1| cold-shock' DNA-binding domain, putative [Francisella tularensis subsp. novicida FTE] gi|208744906|gb|EDZ91204.1| cold-shock' DNA-binding domain protein, putative [Francisella novicida FTG] gi|254842947|gb|EET21361.1| cold shock protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|328676804|gb|AEB27674.1| Cold shock protein CspC [Francisella cf. novicida Fx1] Length = 67 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFI P + G DVF+H SAV +AGL +L EG+ ++++ +N Sbjct: 1 MRQGTVKFFNTSKGFGFIEP---QDGGKDVFVHISAVENAGLSSLREGEKISFEVEEN-- 55 Query: 62 NGKYSAENLK 71 GK +A N+K Sbjct: 56 RGKMAAVNIK 65 >gi|289549228|ref|YP_003474216.1| cold-shock DNA-binding domain protein [Thermocrinis albus DSM 14484] gi|289182845|gb|ADC90089.1| cold-shock DNA-binding domain protein [Thermocrinis albus DSM 14484] Length = 69 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 MV RG++KW++ +KGYGFIT + ++ DVF+H SA+ G L +GQ V ++ ++ Sbjct: 1 MVVRGTVKWFSKEKGYGFITRD---DNQGDVFVHFSAIQQRGFKTLEQGQKVEFEIEEDS 57 Query: 61 ANGKYSAENLKLV 73 + A+N++++ Sbjct: 58 KGPR--AKNVRVI 68 >gi|73542439|ref|YP_296959.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72119852|gb|AAZ62115.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 69 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ E +++F H SA+ AG L EGQ V+++ VQ Sbjct: 1 MASGIVKWFNDAKGFGFIKPD---EGEEELFAHFSAIQMAGFKTLKEGQRVSFEVVQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQATNIQ 65 >gi|85058123|ref|YP_453825.1| major cold shock protein [Sodalis glossinidius str. 'morsitans'] gi|84778643|dbj|BAE73420.1| major cold shock protein [Sodalis glossinidius str. 'morsitans'] Length = 70 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + Q G Sbjct: 6 TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQRVEFTIEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PSAANVVAL 70 >gi|222082370|ref|YP_002541735.1| cold shock protein [Agrobacterium radiobacter K84] gi|221727049|gb|ACM30138.1| cold shock protein [Agrobacterium radiobacter K84] Length = 67 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKG+GFITPE G DVF+H SA+ G +L EG+ V+Y+ Q+ Sbjct: 1 MPTGTVKFFNEDKGFGFITPE---NGGTDVFVHVSALQRGG--SLREGEKVSYELGQDRK 55 Query: 62 NGKYSAENLKLV 73 GK AEN+ ++ Sbjct: 56 TGKSKAENVSVL 67 >gi|104781104|ref|YP_607602.1| cold shock protein CapA [Pseudomonas entomophila L48] gi|95110091|emb|CAK14796.1| cold shock protein CapA [Pseudomonas entomophila L48] Length = 70 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFITP G GDD+F+H A+ S G +L EGQ VT+ + Sbjct: 4 RQNGTVKWFNDEKGYGFITPAG---GGDDLFVHFKAIESDGFKSLKEGQAVTF-VAEKGQ 59 Query: 62 NGKYSAEN 69 G +A+ Sbjct: 60 KGMQAAQV 67 >gi|15827003|ref|NP_301266.1| cold shock protein [Mycobacterium leprae TN] gi|118619394|ref|YP_907726.1| cold shock protein A CspA_1 [Mycobacterium ulcerans Agy99] gi|183985108|ref|YP_001853399.1| cold shock protein A CspA_1 [Mycobacterium marinum M] gi|221229481|ref|YP_002502897.1| putative cold shock protein [Mycobacterium leprae Br4923] gi|296166704|ref|ZP_06849129.1| cold shock protein CspA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|3097243|emb|CAA18820.1| small cold-shock protein [Mycobacterium leprae] gi|13092550|emb|CAC29706.1| putative cold shock protein [Mycobacterium leprae] gi|118571504|gb|ABL06255.1| cold shock protein A CspA_1 [Mycobacterium ulcerans Agy99] gi|183178434|gb|ACC43544.1| cold shock protein A CspA_1 [Mycobacterium marinum M] gi|219932588|emb|CAR70291.1| putative cold shock protein [Mycobacterium leprae Br4923] gi|295897969|gb|EFG77550.1| cold shock protein CspA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 67 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H + + +G L E Q V ++ + Sbjct: 1 MPQGTVKWFNAEKGFGFIAPE---DGSADVFVHYTEIQGSGFRTLEENQKVEFEIGHSPK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|254505942|ref|ZP_05118087.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus 16] gi|323498518|ref|ZP_08103511.1| cold shock protein CspE [Vibrio sinaloensis DSM 21326] gi|219551165|gb|EED28145.1| putative 'Cold-shock' DNA-binding domain [Vibrio parahaemolyticus 16] gi|323316407|gb|EGA69425.1| cold shock protein CspE [Vibrio sinaloensis DSM 21326] Length = 69 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V + Q Sbjct: 6 TGTVKWFNETKGFGFI----KQENGPDVFAHFSAITGDGFRTLAEGQKVEFVITQGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+K V Sbjct: 61 -PQAENIKAV 69 >gi|186473789|ref|YP_001861131.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184196121|gb|ACC74085.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 67 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ + GDD+F H S + G L E Q V+++ + Sbjct: 1 METGIVKWFNDSKGFGFITPD---KGGDDLFAHFSEITGEGFKTLAENQKVSFEIKKGPK 57 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 58 G--LQAANIKPL 67 >gi|24112787|ref|NP_707297.1| cold shock-like protein CspC [Shigella flexneri 2a str. 301] gi|82543745|ref|YP_407692.1| cold shock-like protein CspC [Shigella boydii Sb227] gi|33301070|sp|Q83RI9|CSPC_SHIFL RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|24051715|gb|AAN43004.1| cold shock protein [Shigella flexneri 2a str. 301] gi|81245156|gb|ABB65864.1| cold shock protein [Shigella boydii Sb227] Length = 69 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ GL L EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGLKTLAEGQNVEFEI-QDGQKG 60 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 61 P-AAVNVTAI 69 >gi|228911418|ref|ZP_04075217.1| hypothetical protein bthur0013_55540 [Bacillus thuringiensis IBL 200] gi|228848225|gb|EEM93080.1| hypothetical protein bthur0013_55540 [Bacillus thuringiensis IBL 200] Length = 66 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N DKG+GFI E G+DVF+H SA+ G +L EGQ VT++ + Sbjct: 1 MEQGKVKWFNADKGFGFIERE----GGEDVFVHFSAIQIDGFKSLDEGQSVTFEVEKGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--LQATNVQ 64 >gi|45441309|ref|NP_992848.1| cold shock-like protein CspC [Yersinia pestis biovar Microtus str. 91001] gi|51595960|ref|YP_070151.1| cold shock-like protein CspC [Yersinia pseudotuberculosis IP 32953] gi|108807116|ref|YP_651032.1| cold shock-like protein CspC [Yersinia pestis Antiqua] gi|108812537|ref|YP_648304.1| cold shock-like protein CspC [Yersinia pestis Nepal516] gi|123442059|ref|YP_001006042.1| cold shock-like protein CspC [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145598663|ref|YP_001162739.1| cold shock-like protein CspC [Yersinia pestis Pestoides F] gi|149366301|ref|ZP_01888336.1| cold shock protein [Yersinia pestis CA88-4125] gi|157371062|ref|YP_001479051.1| cold shock-like protein CspC [Serratia proteamaculans 568] gi|165927969|ref|ZP_02223801.1| conserved domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|166010855|ref|ZP_02231753.1| conserved domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211069|ref|ZP_02237104.1| conserved domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167420033|ref|ZP_02311786.1| conserved domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427111|ref|ZP_02318864.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024699|ref|YP_001721204.1| cold shock-like protein CspC [Yersinia pseudotuberculosis YPIII] gi|186895059|ref|YP_001872171.1| cold shock-like protein CspC [Yersinia pseudotuberculosis PB1/+] gi|218928871|ref|YP_002346746.1| cold shock-like protein CspC [Yersinia pestis CO92] gi|229894196|ref|ZP_04509379.1| stress protein, member of the CspA-family [Yersinia pestis Pestoides A] gi|229897121|ref|ZP_04512277.1| stress protein, member of the CspA-family [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897848|ref|ZP_04512999.1| stress protein, member of the CspA-family [Yersinia pestis biovar Orientalis str. India 195] gi|229902921|ref|ZP_04518038.1| stress protein, member of the CspA-family [Yersinia pestis Nepal516] gi|257168081|ref|YP_003169746.1| cold shock-like protein CspC [Yersinia pestis KIM 10] gi|270262270|ref|ZP_06190542.1| Cold shock-like protein CspC [Serratia odorifera 4Rx13] gi|270486706|ref|ZP_06203780.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|284988616|ref|YP_003422337.1| cold shock protein [Yersinia pseudotuberculosis IP 31758] gi|293395700|ref|ZP_06639982.1| MerR family copper efflux regulator [Serratia odorifera DSM 4582] gi|322833600|ref|YP_004213627.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|332162025|ref|YP_004298602.1| cold shock-like protein CspC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|45436169|gb|AAS61725.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001] gi|51589242|emb|CAH20863.1| cold shock protein [Yersinia pseudotuberculosis IP 32953] gi|108776185|gb|ABG18704.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108779029|gb|ABG13087.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] gi|115347482|emb|CAL20388.1| cold shock protein [Yersinia pestis CO92] gi|122089020|emb|CAL11834.1| cold shock-like protein cspC1 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145210359|gb|ABP39766.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|149292714|gb|EDM42788.1| cold shock protein [Yersinia pestis CA88-4125] gi|157322826|gb|ABV41923.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] gi|165920026|gb|EDR37327.1| conserved domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165990199|gb|EDR42500.1| conserved domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166208249|gb|EDR52729.1| conserved domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961728|gb|EDR57749.1| conserved domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167053904|gb|EDR63736.1| conserved domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751233|gb|ACA68751.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186698085|gb|ACC88714.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|229680368|gb|EEO76467.1| stress protein, member of the CspA-family [Yersinia pestis Nepal516] gi|229688889|gb|EEO80954.1| stress protein, member of the CspA-family [Yersinia pestis biovar Orientalis str. India 195] gi|229693458|gb|EEO83507.1| stress protein, member of the CspA-family [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703594|gb|EEO90610.1| stress protein, member of the CspA-family [Yersinia pestis Pestoides A] gi|270044146|gb|EFA17238.1| Cold shock-like protein CspC [Serratia odorifera 4Rx13] gi|270335210|gb|EFA45987.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|291421637|gb|EFE94884.1| MerR family copper efflux regulator [Serratia odorifera DSM 4582] gi|320015521|gb|ADV99092.1| stress protein, member of the CspA-family [Yersinia pestis biovar Medievalis str. Harbin 35] gi|321168801|gb|ADW74500.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|325666255|gb|ADZ42899.1| cold shock-like protein CspC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860843|emb|CBX71127.1| cold shock-like protein cspC [Yersinia enterocolitica W22703] Length = 69 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60 Query: 64 KYSAENLKLV 73 SA N+ + Sbjct: 61 P-SAVNVTAI 69 >gi|284046161|ref|YP_003396501.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] gi|283950382|gb|ADB53126.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] Length = 67 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ +KG+GFITP+ E D+F+H + + S G +L EG V+YD Q D Sbjct: 1 MPTGTVKWFSDEKGFGFITPD---EGSRDLFVHHTGINSDGYRSLAEGAKVSYDEEQGDK 57 Query: 62 NGKYSAENLKLV 73 K A N+ + Sbjct: 58 GPK--AVNVSAI 67 >gi|261251425|ref|ZP_05943999.1| cold shock protein CspE [Vibrio orientalis CIP 102891] gi|260938298|gb|EEX94286.1| cold shock protein CspE [Vibrio orientalis CIP 102891] Length = 69 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H SA+ G L EGQ V + V G Sbjct: 6 TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAITGDGFRTLVEGQKVEF-VVTTGQKG 60 Query: 64 KYSAENLKLV 73 AEN+K++ Sbjct: 61 PQ-AENIKVL 69 >gi|222153840|ref|YP_002563017.1| cold shock protein [Streptococcus uberis 0140J] gi|222114653|emb|CAR43704.1| cold shock protein [Streptococcus uberis 0140J] Length = 67 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ TE G + F H SA+ + G L EGQ VT+D V Sbjct: 1 MAQGTVKWFNAEKGFGFIS----TEEGQEYFAHFSAIQTKGYKTLDEGQQVTFDIVDGHR 56 Query: 62 NGKYSAENLKLVP 74 A N+ +P Sbjct: 57 G--LQAVNITKLP 67 >gi|29830697|ref|NP_825331.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29607810|dbj|BAC71866.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 67 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELQEGQKVNFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|15606511|ref|NP_213891.1| cold shock protein [Aquifex aeolicus VF5] gi|6225213|sp|O67327|CSP_AQUAE RecName: Full=Cold shock-like protein gi|2983729|gb|AAC07291.1| cold shock protein [Aquifex aeolicus VF5] Length = 70 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 5/75 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M RG++KW++ DKGYGFIT E ++ DVF+H + + G L +GQ V +D V++ Sbjct: 1 MSFRGTVKWFSKDKGYGFITRE---DTNADVFVHFTDIQMEGFKTLQKGQKVEFDVVEDT 57 Query: 61 ANGKYSAENLKLVPK 75 + A+N++++ + Sbjct: 58 KGPR--AKNVRVLGE 70 >gi|258645332|ref|ZP_05732801.1| putative cold shock protein [Dialister invisus DSM 15470] gi|260402681|gb|EEW96228.1| putative cold shock protein [Dialister invisus DSM 15470] Length = 66 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ DKG+GFI E G DVF+H SA+ + G L+EGQ V +D + + A G Sbjct: 2 KGTVKWFSADKGFGFIERE----EGGDVFVHYSAIQTEGFKTLSEGQKVDFDII-DGARG 56 Query: 64 KYSAENLKLV 73 +A N+K+V Sbjct: 57 PQAA-NVKVV 65 >gi|71725895|gb|AAZ39066.1| cold shock protein [Exiguobacterium sibiricum 255-15] Length = 67 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E +GDDVF+H SA+ + G +L EGQ V+++ V+ G Sbjct: 4 GKVKWFNSEKGFGFIERE----NGDDVFVHFSAIQTDGFKSLDEGQEVSFE-VEEGQRGP 58 Query: 65 YSAENLK 71 +A + Sbjct: 59 QAANVTR 65 >gi|237746308|ref|ZP_04576788.1| cold-shock DNA-binding family protein [Oxalobacter formigenes HOxBLS] gi|229377659|gb|EEO27750.1| cold-shock DNA-binding family protein [Oxalobacter formigenes HOxBLS] Length = 67 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G D+F H S + +G +LTEGQ V ++ Sbjct: 1 METGTVKWFNDSKGFGFITPDSH---GADLFAHFSEIQGSGFKSLTEGQKVRFETGAGQK 57 Query: 62 NGKYSAENLKLV 73 A+N++ V Sbjct: 58 G--PQAKNIQPV 67 >gi|309702046|emb|CBJ01360.1| cold shock-like protein CspC [Escherichia coli ETEC H10407] Length = 69 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDSQKG 60 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 61 P-AAVNVTAI 69 >gi|152975554|ref|YP_001375071.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024306|gb|ABS22076.1| putative cold-shock DNA-binding domain protein [Bacillus cytotoxicus NVH 391-98] Length = 67 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ V ++ + + Sbjct: 1 MTLTGKVKWFNSEKGFGFIEVE----DGNDVFVHFSAITGEGFKTLDEGQEVNFEVEEGN 56 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 57 -RGPQAKNVVKL 67 >gi|190573988|ref|YP_001971833.1| putative cold shock protein [Stenotrophomonas maltophilia K279a] gi|194365403|ref|YP_002028013.1| cold-shock DNA-binding domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|254524777|ref|ZP_05136832.1| putative 'Cold-shock' DNA-binding domain protein [Stenotrophomonas sp. SKA14] gi|190011910|emb|CAQ45531.1| putative cold shock protein [Stenotrophomonas maltophilia K279a] gi|194348207|gb|ACF51330.1| cold-shock DNA-binding domain protein [Stenotrophomonas maltophilia R551-3] gi|219722368|gb|EED40893.1| putative 'Cold-shock' DNA-binding domain protein [Stenotrophomonas sp. SKA14] Length = 69 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFITPE SG D+F+H A+ G L EGQ VT+ VQ Sbjct: 4 RQTGTVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKTLQEGQKVTFIAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++ V Sbjct: 60 G--MQADQVQAV 69 >gi|83647395|ref|YP_435830.1| cold shock protein [Hahella chejuensis KCTC 2396] gi|83635438|gb|ABC31405.1| Cold shock protein [Hahella chejuensis KCTC 2396] Length = 69 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF H SA+ +G LTEGQ V + Q Sbjct: 6 TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAITGSGFKTLTEGQKVEFTITQGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 61 -PQAENIVPL 69 >gi|320540284|ref|ZP_08039936.1| putative stress protein, member of the CspA-family [Serratia symbiotica str. Tucson] gi|320029604|gb|EFW11631.1| putative stress protein, member of the CspA-family [Serratia symbiotica str. Tucson] Length = 69 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60 Query: 64 KYSAENLKL 72 + + + Sbjct: 61 PSAVNVIAV 69 >gi|163839238|ref|YP_001623643.1| cold shock protein [Renibacterium salmoninarum ATCC 33209] gi|162952714|gb|ABY22229.1| cold shock protein [Renibacterium salmoninarum ATCC 33209] Length = 67 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFIT +G G DVF+H +A+ G +L EGQ V +D Q Sbjct: 1 MAQGTVKWFNAEKGFGFITVDG---DGGDVFVHWAAIEMDGYRSLEEGQRVEFDIGQGQK 57 Query: 62 NGKYSAENLK 71 AE ++ Sbjct: 58 G--AQAEKVR 65 >gi|240146141|ref|ZP_04744742.1| putative cold shock protein [Roseburia intestinalis L1-82] gi|257201740|gb|EEV00025.1| putative cold shock protein [Roseburia intestinalis L1-82] gi|291537505|emb|CBL10617.1| cold-shock DNA-binding protein family [Roseburia intestinalis M50/1] gi|291540033|emb|CBL13144.1| cold-shock DNA-binding protein family [Roseburia intestinalis XB6B4] Length = 67 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGFI S E G+DVF+H S + G +L EG V ++ V+ Sbjct: 1 MNKGTVKWFNNQKGYGFI----SDEQGNDVFVHYSGLNMDGFKSLEEGATVEFEVVEGAK 56 Query: 62 NGKYSAENLKLVP 74 A N+ +V Sbjct: 57 G--PQATNVTVVK 67 >gi|239930668|ref|ZP_04687621.1| cold-shock domain-containing protein [Streptomyces ghanaensis ATCC 14672] gi|291439030|ref|ZP_06578420.1| cold-shock domain-containing protein [Streptomyces ghanaensis ATCC 14672] gi|291341925|gb|EFE68881.1| cold-shock domain-containing protein [Streptomyces ghanaensis ATCC 14672] Length = 67 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVSFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|187925052|ref|YP_001896694.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] gi|187716246|gb|ACD17470.1| cold-shock DNA-binding domain protein [Burkholderia phytofirmans PsJN] Length = 67 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + + G +L E Q V++D V+ Sbjct: 1 METGIVKWFNDAKGFGFITSDS---GGEDLFAHFSEIRAEGFKSLKENQRVSFD-VKAGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|253990173|ref|YP_003041529.1| cold shock-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781623|emb|CAQ84786.1| cold shock-like protein cspc (csp-c) [Photorhabdus asymbiotica] Length = 70 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ V + ++ A G Sbjct: 6 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFTI-ESGAKG 61 Query: 64 KYSAENLKL 72 +A + Sbjct: 62 PAAANVTAI 70 >gi|222056887|ref|YP_002539249.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] gi|221566176|gb|ACM22148.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] Length = 66 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + +G+DVF+H SA+ G +LTEG+ VT++ VQ Sbjct: 1 MANGTVKWFNDSKGFGFIEQD----NGEDVFVHFSAIMGDGFKSLTEGEAVTFE-VQKGP 55 Query: 62 NGKYSAENLK 71 G +A ++ Sbjct: 56 KGLQAANVVR 65 >gi|239978906|ref|ZP_04701430.1| cold shock protein [Streptomyces albus J1074] gi|291450789|ref|ZP_06590179.1| cold shock protein [Streptomyces albus J1074] gi|291353738|gb|EFE80640.1| cold shock protein [Streptomyces albus J1074] Length = 67 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A G L EGQ VT+D Q Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAGRGFRELLEGQKVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--LQAENI 64 >gi|163940200|ref|YP_001645084.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229011681|ref|ZP_04168864.1| Cold shock protein cspB [Bacillus mycoides DSM 2048] gi|229060078|ref|ZP_04197449.1| Cold shock protein cspB [Bacillus cereus AH603] gi|229133259|ref|ZP_04262090.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196] gi|229167245|ref|ZP_04294986.1| Cold shock protein cspB [Bacillus cereus AH621] gi|163862397|gb|ABY43456.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] gi|228616283|gb|EEK73367.1| Cold shock protein cspB [Bacillus cereus AH621] gi|228650203|gb|EEL06207.1| Cold shock protein cspB [Bacillus cereus BDRD-ST196] gi|228719297|gb|EEL70905.1| Cold shock protein cspB [Bacillus cereus AH603] gi|228749639|gb|EEL99481.1| Cold shock protein cspB [Bacillus mycoides DSM 2048] Length = 67 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G DVF+H SA+ G +L EGQ V+++ V++ Sbjct: 1 MTLTGKVKWFNSEKGFGFIE----VADGSDVFVHFSAITGDGFKSLDEGQEVSFE-VEDG 55 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 56 NRGPQAKNVVKL 67 >gi|120556517|ref|YP_960868.1| cold-shock DNA-binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120326366|gb|ABM20681.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei VT8] gi|311696264|gb|ADP99137.1| cold shock, CspA [marine bacterium HP15] Length = 68 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT E G DVF+H SA+ +G L EGQ V + Q Sbjct: 5 TGTVKFFNEAKGFGFITRE----GGPDVFVHYSAIQGSGFKTLAEGQQVEFTVTQGQKG- 59 Query: 64 KYSAENL 70 AEN+ Sbjct: 60 -PQAENV 65 >gi|107102143|ref|ZP_01366061.1| hypothetical protein PaerPA_01003193 [Pseudomonas aeruginosa PACS2] Length = 92 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI EG E D+F H SA+ G L GQ V ++ +Q Sbjct: 3 MLSGKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPK 59 Query: 62 NGKYSAENL 70 A N+ Sbjct: 60 G--LHAINI 66 >gi|153005354|ref|YP_001379679.1| cold-shock DNA-binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028927|gb|ABS26695.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 67 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + GS+KW+N KG+GFI +G G+DVF H +A+ S G L EGQ V ++ Q Sbjct: 1 MASGSVKWFNDAKGFGFIQQDG---GGEDVFCHHTAIQSQGFRTLQEGQRVEFEVKQGPK 57 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 58 G--LQAANVRPV 67 >gi|294635687|ref|ZP_06714158.1| conserved domain protein [Edwardsiella tarda ATCC 23685] gi|291090958|gb|EFE23519.1| conserved domain protein [Edwardsiella tarda ATCC 23685] Length = 71 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + V+N G Sbjct: 6 TGSVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNEFRTLDEGQKVEFS-VENSPKG 61 Query: 64 KYSAENLKL 72 + + + Sbjct: 62 PSAVNVVAI 70 >gi|261210697|ref|ZP_05924989.1| cold shock protein CspD [Vibrio sp. RC341] gi|260840182|gb|EEX66762.1| cold shock protein CspD [Vibrio sp. RC341] Length = 73 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG D+F H S + G L GQ V+Y Q Sbjct: 1 MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMDGYRTLKAGQQVSYQVEQG-P 56 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 57 KGYHASCVVPV 67 >gi|229106451|ref|ZP_04236811.1| hypothetical protein bcere0019_53380 [Bacillus cereus Rock3-28] gi|228676997|gb|EEL31483.1| hypothetical protein bcere0019_53380 [Bacillus cereus Rock3-28] Length = 66 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N DKG+GFI + G+DVF+H SA+ G +L EGQ VT++ + Sbjct: 1 MEQGKVKWFNADKGFGFIE----RQGGEDVFVHFSAIQIDGYKSLDEGQSVTFEVEKGQR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--LQATNVQ 64 >gi|182677655|ref|YP_001831801.1| cold-shock DNA-binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633538|gb|ACB94312.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 70 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++K++N DKGYGFI P+ + G D+F+H +AV AGL L EGQ ++Y+ + Sbjct: 1 MSQQGTVKFFNSDKGYGFIKPD---DGGRDIFVHITAVERAGLQALNEGQRLSYEIEPDK 57 Query: 61 ANGKYSAENLKL 72 A +LK+ Sbjct: 58 KGKGPKAVDLKV 69 >gi|86358607|ref|YP_470499.1| cold shock protein [Rhizobium etli CFN 42] gi|116253191|ref|YP_769029.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|190892746|ref|YP_001979288.1| cold shock protein [Rhizobium etli CIAT 652] gi|209550323|ref|YP_002282240.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|218663420|ref|ZP_03519350.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771] gi|241205705|ref|YP_002976801.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|86282709|gb|ABC91772.1| cold shock protein [Rhizobium etli CFN 42] gi|115257839|emb|CAK08937.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|190698025|gb|ACE92110.1| cold shock protein [Rhizobium etli CIAT 652] gi|209536079|gb|ACI56014.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240859595|gb|ACS57262.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|327188379|gb|EGE55596.1| cold shock protein [Rhizobium etli CNPAF512] Length = 71 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI P+ G D+F+H SAV ++GL LTE Q V++D + Sbjct: 1 MAETGTVKFFNTDKGFGFIKPDR---GGADIFVHISAVQASGLAGLTENQKVSFDTEPDR 57 Query: 61 ANGKYSAENLKL 72 A NL++ Sbjct: 58 RGKGPKAVNLQI 69 >gi|84393766|ref|ZP_00992514.1| cold shock-like protein CspD [Vibrio splendidus 12B01] gi|84375628|gb|EAP92527.1| cold shock-like protein CspD [Vibrio splendidus 12B01] Length = 73 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG D+F H S + G L GQ V Y+ V++ Sbjct: 1 MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMEGYRTLKAGQQVDYE-VESGP 56 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 57 KGSHASSVVPV 67 >gi|330446014|ref|ZP_08309666.1| cold-shock domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490205|dbj|GAA04163.1| cold-shock domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 69 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+ G +L EGQ V++D Q G Sbjct: 5 TGIVKWFNDEKGFGFITQD---NGGADVFVHFRAITGEGFKSLKEGQKVSFDVEQGQ-KG 60 Query: 64 KYSAEN 69 +A Sbjct: 61 PQAANV 66 >gi|302671806|ref|YP_003831766.1| cold shock domain protein CspD1 [Butyrivibrio proteoclasticus B316] gi|302396279|gb|ADL35184.1| cold shock domain protein CspD1 [Butyrivibrio proteoclasticus B316] Length = 66 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGFI+ E+G+DVF+H S + G +L EG V YD +Q + Sbjct: 1 MNKGTVKWFNNQKGYGFIS----DEAGNDVFVHYSGLNMEGFKSLEEGASVEYDVIQGEK 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--PQAVNVNKL 66 >gi|89074300|ref|ZP_01160790.1| Putative cold shock-like protein cspG [Photobacterium sp. SKA34] gi|90578631|ref|ZP_01234441.1| Putative cold shock-like protein cspG [Vibrio angustum S14] gi|89050004|gb|EAR55538.1| Putative cold shock-like protein cspG [Photobacterium sp. SKA34] gi|90439464|gb|EAS64645.1| Putative cold shock-like protein cspG [Vibrio angustum S14] Length = 69 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT + G DVF+H A+ G LTEGQ V+Y+ Q G Sbjct: 5 TGTVKWFNEEKGFGFITQD---NGGADVFVHFRAITGDGFKTLTEGQKVSYETEQG-PKG 60 Query: 64 KYSAEN 69 +A Sbjct: 61 LQAANV 66 >gi|330830328|ref|YP_004393280.1| Cold shock-like protein cspE [Aeromonas veronii B565] gi|328805464|gb|AEB50663.1| Cold shock-like protein cspE [Aeromonas veronii B565] Length = 66 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI E +G DVF+H SA+ G L EGQ V + Q Sbjct: 1 MITGTVKFFNETKGFGFIQQE----NGPDVFVHFSAIQGNGFRTLAEGQRVQFSVTQGQK 56 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 57 G--PQAENVTAL 66 >gi|323493244|ref|ZP_08098373.1| cold shock-like protein CspD [Vibrio brasiliensis LMG 20546] gi|323312510|gb|EGA65645.1| cold shock-like protein CspD [Vibrio brasiliensis LMG 20546] Length = 73 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG DVF H S + G L GQ V ++ V+ Sbjct: 1 MATGTVKWFNNAKGFGFICPEGED---GDVFAHYSTIKMDGYRTLKAGQQVNFE-VEEGP 56 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 57 KGYHASSVVPV 67 >gi|197284798|ref|YP_002150670.1| cold shock protein [Proteus mirabilis HI4320] gi|227357798|ref|ZP_03842147.1| cold shock protein [Proteus mirabilis ATCC 29906] gi|194682285|emb|CAR42037.1| cold shock protein [Proteus mirabilis HI4320] gi|227162127|gb|EEI47141.1| cold shock protein [Proteus mirabilis ATCC 29906] Length = 70 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFITP + DVF+H SA+ S +L EGQ V++ +N G Sbjct: 6 TGTVKWFNDDKGFGFITP---KDGSKDVFVHYSAIQSDDFKSLMEGQEVSFTM-ENGMKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PAAGNVVAL 70 >gi|170693647|ref|ZP_02884805.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] gi|170141429|gb|EDT09599.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] Length = 67 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + S G +L E Q V++D V+ Sbjct: 1 METGIVKWFNDAKGFGFITSDS---GGEDLFAHFSEIRSEGFKSLKENQRVSFD-VKAGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|29830990|ref|NP_825624.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29608104|dbj|BAC72159.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 67 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A++G L EGQ V +D Q Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVNFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|322417715|ref|YP_004196938.1| cold-shock DNA-binding domain-containing protein [Geobacter sp. M18] gi|320124102|gb|ADW11662.1| cold-shock DNA-binding domain protein [Geobacter sp. M18] Length = 66 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI E +G+DVF+H SA+ S G +L EG VT+D VQ Sbjct: 1 MAKGVVKWFNDSKGFGFIEQE----NGEDVFVHFSAIQSDGFKSLAEGDSVTFD-VQQGP 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGLQAANVTRV 66 >gi|148360957|ref|YP_001252164.1| cold shock protein CspD [Legionella pneumophila str. Corby] gi|148282730|gb|ABQ56818.1| cold shock protein CspD [Legionella pneumophila str. Corby] Length = 77 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N KG+GFI PEG G+D+F+H S++ G L GQ VTYD V N Sbjct: 1 MARGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLAPGQAVTYDVV-NGE 56 Query: 62 NGKYSAENLKLVPKSSN 78 G +++ + L + Sbjct: 57 RGLHASNVVALSENAEQ 73 >gi|297560839|ref|YP_003679813.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845287|gb|ADH67307.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 70 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ V+++ VQ Sbjct: 4 RQTGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIEGTGFKSLQEGQTVSFEAVQGQK 59 Query: 62 NGKYSAENLKL 72 A+ +++ Sbjct: 60 G--MQADKVQV 68 >gi|209547434|ref|YP_002279352.1| cold-shock DNA-binding domain-containing protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538678|gb|ACI58612.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 67 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKG+GFITPE + G DVF+H SA+ G +L EG V++D Q+ Sbjct: 1 MPTGTVKFFNDDKGFGFITPE---DGGQDVFVHVSALQRGG--SLREGDKVSFDVGQDRK 55 Query: 62 NGKYSAENLKLV 73 GK AEN+ + Sbjct: 56 TGKSKAENVSTL 67 >gi|85059078|ref|YP_454780.1| cold shock-like protein [Sodalis glossinidius str. 'morsitans'] gi|84779598|dbj|BAE74375.1| cold shock-like protein [Sodalis glossinidius str. 'morsitans'] Length = 73 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI PE G+D+F H S + G L GQ+V ++ Q Sbjct: 1 METGKVKWFNNAKGFGFICPE---NGGEDIFAHYSMIHMDGYRTLKAGQVVRFEVHQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|237808041|ref|YP_002892481.1| cold-shock DNA-binding domain-containing protein [Tolumonas auensis DSM 9187] gi|237500302|gb|ACQ92895.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM 9187] Length = 68 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KW+N KG+GFI + G DVF+H A+ S G L EGQ V + Q Sbjct: 3 VRTGKVKWFNEAKGFGFIQQD----EGPDVFVHFRAINSTGFKTLAEGQRVQFTVTQGQK 58 Query: 62 NGKYSAENLKLV 73 AEN+ ++ Sbjct: 59 G--PQAENVTVL 68 >gi|146342873|ref|YP_001207921.1| DNA binding cold shock protein [Bradyrhizobium sp. ORS278] gi|146195679|emb|CAL79706.1| Cold shock protein, DNA binding [Bradyrhizobium sp. ORS278] Length = 71 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +LTEGQ ++++ + Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57 Query: 61 ANGKYSAENLKL 72 A NL L Sbjct: 58 KGKGPKAVNLVL 69 >gi|91784878|ref|YP_560084.1| cold-shock DNA-binding protein family protein [Burkholderia xenovorans LB400] gi|296160038|ref|ZP_06842858.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] gi|91688832|gb|ABE32032.1| cold-shock DNA-binding protein family [Burkholderia xenovorans LB400] gi|295889784|gb|EFG69582.1| cold-shock DNA-binding domain protein [Burkholderia sp. Ch1-1] Length = 67 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + + G +L E Q V++D V+ Sbjct: 1 METGIVKWFNDAKGFGFITSDS---GGEDLFAHFSEIRADGFKSLKENQRVSFD-VKAGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|260598404|ref|YP_003210975.1| RNA chaperone/anti-terminator [Cronobacter turicensis z3032] gi|260217581|emb|CBA31827.1| Cold shock protein cspA [Cronobacter turicensis z3032] Length = 70 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP + DVF+H SA+ S L EGQ V++ +N A G Sbjct: 6 TGLVKWFNADKGFGFITP---NDGSKDVFVHFSAIQSDNFKTLDEGQQVSFTI-ENGAKG 61 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 62 P-AAGNVTPL 70 >gi|148253260|ref|YP_001237845.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp. BTAi1] gi|146405433|gb|ABQ33939.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1] Length = 71 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +L+EGQ ++++ + Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLSEGQRISFEVEPDK 57 Query: 61 ANGKYSAENLKL 72 A NL L Sbjct: 58 KGKGPKAVNLVL 69 >gi|114562869|ref|YP_750382.1| cold-shock DNA-binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114334162|gb|ABI71544.1| cold-shock DNA-binding protein family [Shewanella frigidimarina NCIMB 400] gi|149675700|dbj|BAF64729.1| cold shock protein [Shewanella livingstonensis] Length = 68 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V++ Q Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ +V Sbjct: 60 -PQAENVSIV 68 >gi|239981276|ref|ZP_04703800.1| cold shock protein [Streptomyces albus J1074] gi|291453133|ref|ZP_06592523.1| cold shock protein [Streptomyces albus J1074] gi|291356082|gb|EFE82984.1| cold shock protein [Streptomyces albus J1074] Length = 67 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +++ G L EGQ V++D Q Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNISAQGFRELIEGQKVSFDVTQGQK 57 Query: 62 NGKYSAENLKL 72 AEN+ + Sbjct: 58 G--PQAENIVV 66 >gi|146283383|ref|YP_001173536.1| cold acclimation protein B [Pseudomonas stutzeri A1501] gi|146308538|ref|YP_001189003.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina ymp] gi|145571588|gb|ABP80694.1| cold acclimation protein B [Pseudomonas stutzeri A1501] gi|145576739|gb|ABP86271.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp] gi|327481776|gb|AEA85086.1| cold acclimation protein B [Pseudomonas stutzeri DSM 4166] Length = 70 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ V++ VQ Sbjct: 4 RQNGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQKVSFIAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++++ Sbjct: 60 G--MQADQVQIL 69 >gi|153950481|ref|YP_001399368.1| cold shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|152961976|gb|ABS49437.1| cold shock DNA-binding domain protein [Yersinia pseudotuberculosis IP 31758] Length = 70 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP + DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVIAL 70 >gi|192360440|ref|YP_001982658.1| cold shock protein-like protein [Cellvibrio japonicus Ueda107] gi|190686605|gb|ACE84283.1| cold shock protein-related protein [Cellvibrio japonicus Ueda107] Length = 78 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI ESG DVF+H SA++ +G L EGQ V +D Sbjct: 15 TGTVKWFNESKGFGFIA----AESGQDVFVHYSAISGSGFKTLAEGQRVEFDVKPGQKG- 69 Query: 64 KYSAENLK 71 AEN+ Sbjct: 70 -PQAENVT 76 >gi|148266031|ref|YP_001232737.1| cold-shock DNA-binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146399531|gb|ABQ28164.1| cold-shock DNA-binding protein family [Geobacter uraniireducens Rf4] Length = 66 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ E +G+DVF+H SA+ G +L EG VT+D N Sbjct: 1 MANGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAITGDGFKSLAEGDRVTFDVT-NGP 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGLQAANVTRV 66 >gi|262278327|ref|ZP_06056112.1| cold shock protein [Acinetobacter calcoaceticus RUH2202] gi|299769266|ref|YP_003731292.1| cold shock protein [Acinetobacter sp. DR1] gi|262258678|gb|EEY77411.1| cold shock protein [Acinetobacter calcoaceticus RUH2202] gi|298699354|gb|ADI89919.1| cold shock protein [Acinetobacter sp. DR1] Length = 71 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI PE SG DVF H S +A++G L EGQ V + Q Sbjct: 6 IMKGTVKWFNEAKGFGFIQPE----SGPDVFAHFSEIANSGFRTLAEGQRVEFSVAQGQ- 60 Query: 62 NGKYSAENLKL 72 G + + L Sbjct: 61 KGPNAVNIVAL 71 >gi|260886462|ref|ZP_05897725.1| conserved domain protein [Selenomonas sputigena ATCC 35185] gi|330839687|ref|YP_004414267.1| cold-shock DNA-binding domain protein [Selenomonas sputigena ATCC 35185] gi|260863801|gb|EEX78301.1| conserved domain protein [Selenomonas sputigena ATCC 35185] gi|329747451|gb|AEC00808.1| cold-shock DNA-binding domain protein [Selenomonas sputigena ATCC 35185] Length = 66 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KGYGFI E GDDVF+H SA+ G L EGQ V ++ V+ A G Sbjct: 3 GKVKWFSAEKGYGFIERE----DGDDVFVHFSAIQGDGFKTLAEGQGVEFEIVEG-ARGP 57 Query: 65 YSAENLK 71 ++ +K Sbjct: 58 QASNVVK 64 >gi|194290614|ref|YP_002006521.1| cold shock protein, RNA chaperone, transcription antiterminator, affects expression of rpos and uspa [Cupriavidus taiwanensis LMG 19424] gi|193224449|emb|CAQ70460.1| cold shock protein, RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Cupriavidus taiwanensis LMG 19424] Length = 68 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ E +++F H SA+ AG L EGQ V+++ VQ Sbjct: 1 MASGIVKWFNDAKGFGFIKPD---EGEEELFAHFSAIQMAGFKTLKEGQRVSFEVVQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQATNIQ 65 >gi|27550093|gb|AAO18076.1| unknown [Photorhabdus luminescens] Length = 71 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V++ +N A G Sbjct: 6 TGSVKWFNNDKGFGFISP---KDGSKDVFVHYSAIQSNNFKTLEEGQEVSFSI-ENGAKG 61 Query: 64 KYSAENLKLV 73 SA N+ ++ Sbjct: 62 P-SAVNVIVL 70 >gi|331700130|ref|YP_004336369.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326954819|gb|AEA28516.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans CB1190] Length = 67 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI +G G DVF+H S + ++G +L EGQ V ++ Q Sbjct: 1 MAQGTVKWFNGEKGFGFIQQDG---GGADVFVHYSEIDASGFRSLDEGQRVEFEVGQG-K 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPQA 61 >gi|153814427|ref|ZP_01967095.1| hypothetical protein RUMTOR_00637 [Ruminococcus torques ATCC 27756] gi|145848823|gb|EDK25741.1| hypothetical protein RUMTOR_00637 [Ruminococcus torques ATCC 27756] Length = 70 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFI+ G+D+F+H S + G L EGQ V ++ + A G Sbjct: 7 TGTVKWFNNQKGYGFIS----DSEGNDIFVHYSGLVMDGFKTLEEGQAVEFEVTEG-AKG 61 Query: 64 KYSAENLKL 72 + +KL Sbjct: 62 PQATNVVKL 70 >gi|119963512|ref|YP_948311.1| cold shock protein [Arthrobacter aurescens TC1] gi|119950371|gb|ABM09282.1| putative cold shock protein [Arthrobacter aurescens TC1] Length = 95 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFITP+ + DVF+H S + + G L E Q V ++ Q Sbjct: 29 MALGTVKWFNAEKGFGFITPDDAD---GDVFVHYSEIQTGGFKTLDENQRVQFEIGQGAK 85 Query: 62 NGKYSAENLKLV 73 A + +V Sbjct: 86 G--PQATGVTVV 95 >gi|330872660|gb|EGH06809.1| cold-shock protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 106 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 39 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 93 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 94 LQAEDVIAALPR 105 >gi|194293032|ref|YP_002008939.1| cold shock-like protein [Cupriavidus taiwanensis LMG 19424] gi|193226936|emb|CAQ72887.1| Cold shock-like protein [Cupriavidus taiwanensis LMG 19424] Length = 67 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ GDD+F H S + + G +L E Q V ++ V+N Sbjct: 1 MQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEIRAEGFKSLQENQRVQFE-VKNGP 56 Query: 62 NGKYSAE 68 G +A Sbjct: 57 KGLQAAN 63 >gi|78221561|ref|YP_383308.1| cold-shock DNA-binding protein family protein [Geobacter metallireducens GS-15] gi|78192816|gb|ABB30583.1| cold-shock DNA-binding protein family [Geobacter metallireducens GS-15] Length = 66 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ E +G+DVF+H SA+ G +LTEG VT+D V+ Sbjct: 1 MANGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAINGDGFKSLTEGDRVTFDVVKG-P 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGLQAANVTRV 66 >gi|26249026|ref|NP_755066.1| cold shock-like protein cspB [Escherichia coli CFT073] gi|218551643|ref|YP_002385435.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC 35469] gi|218561570|ref|YP_002394483.1| cold shock protein; Qin prophage [Escherichia coli S88] gi|300925265|ref|ZP_07141160.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|331680503|ref|ZP_08381162.1| conserved domain protein [Escherichia coli H591] gi|26109433|gb|AAN81636.1|AE016765_38 Cold shock-like protein cspB [Escherichia coli CFT073] gi|218359185|emb|CAQ91849.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC 35469] gi|218368339|emb|CAR06158.1| cold shock protein; Qin prophage [Escherichia coli S88] gi|300418598|gb|EFK01909.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|323190390|gb|EFZ75666.1| cold shock-like protein cspG [Escherichia coli RN587/1] gi|324112033|gb|EGC06011.1| cold-shock DNA-binding domain-containing protein [Escherichia fergusonii B253] gi|331071966|gb|EGI43302.1| conserved domain protein [Escherichia coli H591] Length = 71 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + DVF+H SA+ + L EGQ VT+ V++ A G Sbjct: 6 TGLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNFRTLFEGQKVTFS-VESGAKG 61 Query: 64 KYSAENL 70 +A + Sbjct: 62 PAAANVI 68 >gi|37527652|ref|NP_930996.1| cold shock-like protein (CPS-I) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787087|emb|CAE16162.1| cold shock-like protein (CPS-I) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 71 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V++ +N A G Sbjct: 6 TGSVKWFNNDKGFGFISP---KDGSKDVFVHYSAIQSNNFKTLEEGQEVSFSI-ENGAKG 61 Query: 64 KYSAENLKLV 73 SA N+ ++ Sbjct: 62 P-SAVNVIVL 70 >gi|94314735|ref|YP_587944.1| major cold shock protein [Cupriavidus metallidurans CH34] gi|93358587|gb|ABF12675.1| major cold shock protein [Cupriavidus metallidurans CH34] Length = 67 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ GDD+F H S V + G +L E Q V+++ V+N Sbjct: 1 MQTGIVKWFNDAKGFGFIKPDA---GGDDLFAHFSEVRADGFKSLQENQRVSFE-VKNGP 56 Query: 62 NGKYSAE 68 G +A Sbjct: 57 KGLQAAN 63 >gi|331016432|gb|EGH96488.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 106 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 39 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 93 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 94 LQAEDVIAALPR 105 >gi|329888180|ref|ZP_08266778.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC 11568] gi|328846736|gb|EGF96298.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC 11568] Length = 67 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP KG+GFI P+ G DVF+H +AV AGL L + V Y+ Sbjct: 1 MATGTVKWFNPTKGFGFIQPDT---GGADVFVHITAVQKAGLVGLDDNAKVEYEL--ETQ 55 Query: 62 NGKYSAENLKLV 73 GK SA +LKL+ Sbjct: 56 RGKTSAVDLKLL 67 >gi|320009867|gb|ADW04717.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] Length = 67 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQEG---GGADVFAHYSNIAAQGFRELQEGQKVNFDVTQGQK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENIT 65 >gi|148266390|ref|YP_001233096.1| cold-shock DNA-binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146399890|gb|ABQ28523.1| cold-shock DNA-binding protein family [Geobacter uraniireducens Rf4] Length = 66 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + +GDDVF+H SA+ G +L EG+ VT++ VQ Sbjct: 1 MANGTVKWFNDSKGFGFIEQD----NGDDVFVHFSAIMGDGFKSLAEGEAVTFE-VQKGP 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGLQAANVNRV 66 >gi|207722622|ref|YP_002253058.1| cold shock-like protein [Ralstonia solanacearum MolK2] gi|300696567|ref|YP_003747228.1| Cold shock DNA binding protein (transcriptional regulator) [Ralstonia solanacearum CFBP2957] gi|206587804|emb|CAQ18386.1| cold shock-like protein [Ralstonia solanacearum MolK2] gi|299073291|emb|CBJ52800.1| Cold shock DNA binding protein (transcription regulator) [Ralstonia solanacearum CFBP2957] Length = 67 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+G G D+F H S + AG L +GQ V+++ Q Sbjct: 1 MATGTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGAGFKTLKDGQKVSFEVKQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|253699301|ref|YP_003020490.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] gi|251774151|gb|ACT16732.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] Length = 66 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI + +G DVF+H S++ G +L EG VT+D VQ A Sbjct: 1 MANGVVKWFNDAKGFGFIEQD----NGVDVFVHFSSIQGDGFKSLVEGDAVTFDVVQG-A 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 KGPQAANVVK 65 >gi|25026862|ref|NP_736916.1| putative cold shock protein [Corynebacterium efficiens YS-314] gi|259506076|ref|ZP_05748978.1| cold shock protein [Corynebacterium efficiens YS-314] gi|23492142|dbj|BAC17116.1| putative cold shock protein [Corynebacterium efficiens YS-314] gi|259166364|gb|EEW50918.1| cold shock protein [Corynebacterium efficiens YS-314] Length = 67 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+NP+KG+GFI P ++ DVF+H S + G L E QLV ++ + Sbjct: 1 MAQGTVKWFNPEKGFGFIAP---SDGSADVFVHYSEIEGNGFRTLEENQLVEFEIGEGAK 57 Query: 62 NGKYSAENLKLV 73 A++++ V Sbjct: 58 G--LQAQSVRAV 67 >gi|167838062|ref|ZP_02464921.1| cold-shock domain family protein [Burkholderia thailandensis MSMB43] Length = 67 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITPEG G+D+F H S + G L E Q V ++ V+ Sbjct: 1 MAIGTVKWFNDAKGFGFITPEG---GGEDLFAHFSEIRVDGFKTLQENQKVEFE-VKTGP 56 Query: 62 NGKYSAENLKLV 73 G +A N+K + Sbjct: 57 KGLQAA-NIKPL 67 >gi|330810595|ref|YP_004355057.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378703|gb|AEA70053.1| putative Transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 70 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ + Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAEKGQ 59 Query: 62 NGKYSAEN 69 G +A+ Sbjct: 60 KGMQAAQV 67 >gi|310287193|ref|YP_003938451.1| Cold shock protein [Bifidobacterium bifidum S17] gi|313139892|ref|ZP_07802085.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium bifidum NCIMB 41171] gi|309251129|gb|ADO52877.1| Cold shock protein [Bifidobacterium bifidum S17] gi|313132402|gb|EFR50019.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium bifidum NCIMB 41171] Length = 89 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K+++ KGYGFIT + GDDVF+H S + + G L EG V Y+ + Sbjct: 23 MAQGTVKFFSAGKGYGFITSDA---GGDDVFVHYSVIQADGFKTLNEGDKVEYE-AERGP 78 Query: 62 NGKYSAENLKL 72 G + + +KL Sbjct: 79 KGMQATKVVKL 89 >gi|302822137|ref|XP_002992728.1| hypothetical protein SELMODRAFT_186937 [Selaginella moellendorffii] gi|300139469|gb|EFJ06209.1| hypothetical protein SELMODRAFT_186937 [Selaginella moellendorffii] Length = 159 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 45/67 (67%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ + G+D+F+H+S++ + G +L +G+ V + +++ +G+ Sbjct: 10 GKVKWFNSAKGFGFITPD---DGGEDLFVHQSSIHADGFRSLKDGEAVEFTIDRSE-DGR 65 Query: 65 YSAENLK 71 A ++ Sbjct: 66 TKALDVT 72 >gi|126731842|ref|ZP_01747646.1| cold shock protein CspA [Sagittula stellata E-37] gi|126707669|gb|EBA06731.1| cold shock protein CspA [Sagittula stellata E-37] Length = 68 Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE DVFLH SAV AG+ + +GQ VT+D V++ Sbjct: 1 MANGTVKWFNSTKGFGFIQPEH---GSKDVFLHISAVERAGINRIEDGQAVTFD-VESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRESAINLAL 67 >gi|296132465|ref|YP_003639712.1| cold-shock DNA-binding domain protein [Thermincola sp. JR] gi|296031043|gb|ADG81811.1| cold-shock DNA-binding domain protein [Thermincola potens JR] Length = 65 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI +G DVF+H SA+ + G L EG+ V +D VQ + G Sbjct: 2 EGTVKWFNAEKGFGFIE----ASNGSDVFVHFSAIQNEGFKTLEEGEKVFFDIVQGN-RG 56 Query: 64 KYSAENLK 71 +A ++ Sbjct: 57 PQAANVVR 64 >gi|188586202|ref|YP_001917747.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350889|gb|ACB85159.1| cold-shock DNA-binding protein family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ KGYGFI E DVF+H SA+ G +L +GQ V ++ V+ D Sbjct: 1 MTTGTVKWFDSKKGYGFIERESGE---GDVFVHFSAINEEGFKSLEDGQEVEFEVVEAD- 56 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 57 RGPQAANVNKL 67 >gi|167563689|ref|ZP_02356605.1| cold-shock domain family protein [Burkholderia oklahomensis EO147] gi|167570839|ref|ZP_02363713.1| cold-shock domain family protein [Burkholderia oklahomensis C6786] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V+++ V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIKMDGFKTLKENQRVSFE-VKTGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|241554075|ref|YP_002979288.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863381|gb|ACS61043.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKG+GFITPE G DVF+H SA+ G +L EG V+++ Q+ Sbjct: 1 MATGTVKFFNDDKGFGFITPE---NGGQDVFVHVSALQRGG--SLREGDKVSFEVGQDRK 55 Query: 62 NGKYSAENLKLV 73 GK AEN+ ++ Sbjct: 56 TGKSKAENVSVL 67 >gi|259416628|ref|ZP_05740548.1| conserved domain protein [Silicibacter sp. TrichCH4B] gi|259348067|gb|EEW59844.1| conserved domain protein [Silicibacter sp. TrichCH4B] Length = 68 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE + DVFLH SAV AG+ + +GQ VTYD ++ Sbjct: 1 MANGTVKWFNSTKGFGFIQPE---DGTQDVFLHVSAVERAGINRIDDGQKVTYDL-ESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA NL L Sbjct: 57 DGRTSASNLAL 67 >gi|323342986|ref|ZP_08083217.1| cold shock protein CspA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463050|gb|EFY08245.1| cold shock protein CspA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 66 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N +KGYGFIT E G D+F+H SA+ + G L EGQ V+++ V+ Sbjct: 1 MSTGKVKFFNAEKGYGFIT----IEGGQDIFVHYSAIVADGYKTLEEGQEVSFEVVEGPR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--EQAANVR 64 >gi|222086573|ref|YP_002545107.1| cold shock protein [Agrobacterium radiobacter K84] gi|221724021|gb|ACM27177.1| cold shock protein [Agrobacterium radiobacter K84] Length = 71 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI P+ + G D+F+H SAV ++GL L+E Q V++D + Sbjct: 1 MAETGTVKFFNTDKGFGFIKPD---KGGADIFVHISAVQASGLAGLSENQKVSFDTEPDR 57 Query: 61 ANGKYSAENLKL 72 A NL++ Sbjct: 58 RGKGPKAVNLQI 69 >gi|83858279|ref|ZP_00951801.1| cold-shock domain family protein [Oceanicaulis alexandrii HTCC2633] gi|83853102|gb|EAP90954.1| cold-shock domain family protein [Oceanicaulis alexandrii HTCC2633] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI P+ + DVF+H SAV AG+ L EGQ ++++ + Sbjct: 1 MATGIVKWFNSTKGYGFIQPD---DGSKDVFVHASAVERAGMPELKEGQRISFEEEVDKR 57 Query: 62 NGKYSAENL 70 +GK SA +L Sbjct: 58 SGKTSAGSL 66 >gi|323483687|ref|ZP_08089070.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14163] gi|323692654|ref|ZP_08106885.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14673] gi|323403023|gb|EGA95338.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14163] gi|323503291|gb|EGB19122.1| cold-shock DNA-binding domain-containing protein [Clostridium symbiosum WAL-14673] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGFI+ E G+D+F+H S +A G L +GQ V+++ + Sbjct: 1 MNKGTVKWFNSQKGYGFIS----DEQGNDIFVHFSGLAMDGYKTLEDGQSVSFEVTEGAR 56 Query: 62 NGKYSAENLKL 72 A N+ + Sbjct: 57 G--LQAVNVTV 65 >gi|171058345|ref|YP_001790694.1| cold-shock DNA-binding domain-containing protein [Leptothrix cholodnii SP-6] gi|170775790|gb|ACB33929.1| cold-shock DNA-binding domain protein [Leptothrix cholodnii SP-6] Length = 79 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N KG+GFI PE E G+DVF H SA+ G L +G V +D V + Sbjct: 1 MPRGIVKWFNDVKGFGFIEPE---EGGEDVFAHFSAIQMEGFRTLKQGSSVDFDLV-DGP 56 Query: 62 NGKYSAENLK 71 GK A+N++ Sbjct: 57 KGKL-AQNIR 65 >gi|222054862|ref|YP_002537224.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] gi|221564151|gb|ACM20123.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] Length = 66 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GF+ E +G+DVF+H SA+ G +LTEG VT+D + Sbjct: 1 MEKGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAITGDGFKSLTEGDKVTFDVTRG-P 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGLQAANVTRM 66 >gi|331002349|ref|ZP_08325867.1| cold shock-like protein cspLB [Lachnospiraceae oral taxon 107 str. F0167] gi|330410165|gb|EGG89599.1| cold shock-like protein cspLB [Lachnospiraceae oral taxon 107 str. F0167] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++RG++KW+N KGYGFI S E G DVF+H S + G L EG V YD + Sbjct: 1 MNRGTVKWFNNQKGYGFI----SDEGGSDVFVHFSDLNMEGFKTLDEGISVEYDLTEGAK 56 Query: 62 NGKYSAENLKLV 73 A N+ +V Sbjct: 57 G--PQAVNVTVV 66 >gi|317500145|ref|ZP_07958378.1| cold shock protein CspA [Lachnospiraceae bacterium 8_1_57FAA] gi|331087628|ref|ZP_08336556.1| cold shock-like protein cspC [Lachnospiraceae bacterium 3_1_46FAA] gi|316898434|gb|EFV20472.1| cold shock protein CspA [Lachnospiraceae bacterium 8_1_57FAA] gi|330399807|gb|EGG79467.1| cold shock-like protein cspC [Lachnospiraceae bacterium 3_1_46FAA] Length = 65 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFI+ G+D+F+H S + G L EGQ V ++ + A G Sbjct: 2 TGTVKWFNNQKGYGFIS----DSEGNDIFVHYSGLVMDGFKTLEEGQAVEFEVTEG-AKG 56 Query: 64 KYSAENLKL 72 + +KL Sbjct: 57 PQATNVVKL 65 >gi|296135805|ref|YP_003643047.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12] gi|294339970|emb|CAZ88333.1| Cold shock protein [Thiomonas sp. 3As] gi|295795927|gb|ADG30717.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ E G+D+F H S + + G L E Q V + Sbjct: 1 MATGTVKWFNESKGFGFIKPD---EGGEDLFAHFSEIQAKGFRTLQENQRVEFTVKAGPK 57 Query: 62 NGKYSA 67 + SA Sbjct: 58 GPQASA 63 >gi|70731246|ref|YP_260987.1| cold shock domain-containing protein CspD [Pseudomonas fluorescens Pf-5] gi|68345545|gb|AAY93151.1| cold shock domain protein CspD [Pseudomonas fluorescens Pf-5] Length = 85 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI EG T+ D+F H SA+ G L GQ V+++ +Q Sbjct: 1 MASGKVKWFNNAKGYGFINEEGKTD---DLFAHYSAIDMDGYKTLKAGQAVSFEIIQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|330504702|ref|YP_004381571.1| cold-shock domain-containing protein [Pseudomonas mendocina NK-01] gi|328918988|gb|AEB59819.1| cold-shock domain-containing protein [Pseudomonas mendocina NK-01] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ V++ VQ Sbjct: 4 RQNGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIEGNGFKSLKEGQKVSFVAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++++ Sbjct: 60 G--MQADQVQIL 69 >gi|302824155|ref|XP_002993723.1| hypothetical protein SELMODRAFT_187582 [Selaginella moellendorffii] gi|300138447|gb|EFJ05215.1| hypothetical protein SELMODRAFT_187582 [Selaginella moellendorffii] Length = 165 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 45/67 (67%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITP+ + G+D+F+H+S++ + G +L +G+ V + +++ +G+ Sbjct: 10 GKVKWFNSAKGFGFITPD---DGGEDLFVHQSSIHADGFRSLKDGEAVEFTIDRSE-DGR 65 Query: 65 YSAENLK 71 A ++ Sbjct: 66 TKALDVT 72 >gi|146318066|ref|YP_001197778.1| cold shock protein [Streptococcus suis 05ZYH33] gi|146320244|ref|YP_001199955.1| cold shock protein [Streptococcus suis 98HAH33] gi|253751260|ref|YP_003024401.1| cold shock protein [Streptococcus suis SC84] gi|253753161|ref|YP_003026301.1| cold shock protein [Streptococcus suis P1/7] gi|253754984|ref|YP_003028124.1| cold shock protein [Streptococcus suis BM407] gi|145688872|gb|ABP89378.1| Cold shock protein [Streptococcus suis 05ZYH33] gi|145691050|gb|ABP91555.1| Cold shock protein [Streptococcus suis 98HAH33] gi|251815549|emb|CAZ51132.1| cold shock protein [Streptococcus suis SC84] gi|251817448|emb|CAZ55189.1| cold shock protein [Streptococcus suis BM407] gi|251819406|emb|CAR44864.1| cold shock protein [Streptococcus suis P1/7] gi|292557828|gb|ADE30829.1| Cold shock protein [Streptococcus suis GZ1] gi|319757539|gb|ADV69481.1| cold shock protein [Streptococcus suis JS14] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E +G DVF H S + S G +L +GQ VT++ Q Sbjct: 1 MVQGTVKWFNAEKGFGFIAQE----NGPDVFAHFSEIQSNGFKSLEDGQKVTFEVEQGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--LQATNITKI 66 >gi|226531123|ref|NP_001151606.1| LOC100285240 [Zea mays] gi|195638850|gb|ACG38893.1| glycine-rich protein 2b [Zea mays] Length = 208 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + +D+F+H+S++ S G +L +G V Y + +G+ Sbjct: 8 GTVKWFNGTKGFGFITPD---DGSEDLFVHQSSIKSDGYRSLNDGDAVEYTVG-SGNDGR 63 Query: 65 YSAENLK 71 A ++ Sbjct: 64 AKALDVT 70 >gi|195609518|gb|ACG26589.1| glycine-rich protein 2b [Zea mays] Length = 208 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + +D+F+H+S++ S G +L +G V Y + +G+ Sbjct: 8 GTVKWFNGTKGFGFITPD---DGSEDLFVHQSSIKSDGYRSLNDGDAVEYTVG-SGNDGR 63 Query: 65 YSAENLK 71 A ++ Sbjct: 64 AKALDVT 70 >gi|154502556|ref|ZP_02039616.1| hypothetical protein RUMGNA_00369 [Ruminococcus gnavus ATCC 29149] gi|153796748|gb|EDN79168.1| hypothetical protein RUMGNA_00369 [Ruminococcus gnavus ATCC 29149] Length = 65 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFI+ G+DVF+H S + G +L EGQ V ++ + A G Sbjct: 2 TGTVKWFNNQKGYGFIS----DSEGNDVFVHYSGLVMDGFKSLEEGQAVEFEVTEG-AKG 56 Query: 64 KYSAENLKL 72 + +KL Sbjct: 57 PQATNVVKL 65 >gi|113869008|ref|YP_727497.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] gi|113527784|emb|CAJ94129.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] Length = 68 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ E +++F H SA+ +G L EGQ V+++ VQ Sbjct: 1 MASGIVKWFNDAKGFGFIKPD---EGEEELFAHFSAIQMSGFKTLKEGQRVSFEVVQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQATNIQ 65 >gi|313896973|ref|ZP_07830520.1| 7.4 kDa cold shock protein [Selenomonas sp. oral taxon 137 str. F0430] gi|320530494|ref|ZP_08031552.1| cold-shock DNA-binding domain protein [Selenomonas artemidis F0399] gi|312974420|gb|EFR39888.1| 7.4 kDa cold shock protein [Selenomonas sp. oral taxon 137 str. F0430] gi|320137327|gb|EFW29251.1| cold-shock DNA-binding domain protein [Selenomonas artemidis F0399] Length = 66 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ DKGYGFI+ + GDDVF+H S++ G L+EGQ V +D V+ A G Sbjct: 2 TGKVKWFSADKGYGFISRD----DGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVEG-ARG 56 Query: 64 KYSAENLK 71 + +K Sbjct: 57 PQADNVVK 64 >gi|300718875|ref|YP_003743678.1| Cold-shock DNA-binding protein family [Erwinia billingiae Eb661] gi|299064711|emb|CAX61831.1| Cold-shock DNA-binding protein family [Erwinia billingiae Eb661] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+PE + DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFNSDKGFGFISPE---DGSKDVFVHFSAIQSNDFKTLDEGQKVEFTI-ENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAGNVVAL 70 >gi|148378284|ref|YP_001252825.1| cold shock protein [Clostridium botulinum A str. ATCC 3502] gi|153932083|ref|YP_001382685.1| cold shock protein [Clostridium botulinum A str. ATCC 19397] gi|153937821|ref|YP_001386236.1| cold shock protein [Clostridium botulinum A str. Hall] gi|153940157|ref|YP_001389651.1| cold shock protein [Clostridium botulinum F str. Langeland] gi|168177625|ref|ZP_02612289.1| cold shock protein [Clostridium botulinum NCTC 2916] gi|168182105|ref|ZP_02616769.1| cold shock protein [Clostridium botulinum Bf] gi|170755331|ref|YP_001779935.1| cold shock protein [Clostridium botulinum B1 str. Okra] gi|187777110|ref|ZP_02993583.1| hypothetical protein CLOSPO_00655 [Clostridium sporogenes ATCC 15579] gi|226947506|ref|YP_002802597.1| cold shock protein [Clostridium botulinum A2 str. Kyoto] gi|237793603|ref|YP_002861155.1| cold shock protein [Clostridium botulinum Ba4 str. 657] gi|148287768|emb|CAL81834.1| cold shock protein [Clostridium botulinum A str. ATCC 3502] gi|152928127|gb|ABS33627.1| cold shock protein [Clostridium botulinum A str. ATCC 19397] gi|152933735|gb|ABS39234.1| cold shock protein [Clostridium botulinum A str. Hall] gi|152936053|gb|ABS41551.1| cold shock protein [Clostridium botulinum F str. Langeland] gi|169120543|gb|ACA44379.1| cold shock protein [Clostridium botulinum B1 str. Okra] gi|182670885|gb|EDT82859.1| cold shock protein [Clostridium botulinum NCTC 2916] gi|182674516|gb|EDT86477.1| cold shock protein [Clostridium botulinum Bf] gi|187774038|gb|EDU37840.1| hypothetical protein CLOSPO_00655 [Clostridium sporogenes ATCC 15579] gi|226842860|gb|ACO85526.1| cold shock protein [Clostridium botulinum A2 str. Kyoto] gi|229261379|gb|ACQ52412.1| cold shock protein [Clostridium botulinum Ba4 str. 657] gi|295317741|gb|ADF98118.1| cold shock protein [Clostridium botulinum F str. 230613] gi|322804547|emb|CBZ02098.1| cold shock protein CspG [Clostridium botulinum H04402 065] Length = 65 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT E G+DVF H S + S G +L EGQ V+YD V+ Sbjct: 2 NGTVKWFNGEKGFGFIT----GEDGNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKG- 56 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 57 -PQAENITII 65 >gi|13472380|ref|NP_103947.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|260467122|ref|ZP_05813301.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|14023126|dbj|BAB49733.1| probable cold shock protein [Mesorhizobium loti MAFF303099] gi|259029134|gb|EEW30431.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N KG+GFITP+ + DVF+H SAV ++GL L +GQ VT+D + Sbjct: 1 MPQTGTVKFFNHAKGFGFITPD---DGAKDVFVHISAVQASGLPGLEDGQKVTFDTEPDK 57 Query: 61 ANGKYSAENLKL 72 A NL + Sbjct: 58 RGKGPKAVNLSV 69 >gi|319760574|ref|YP_004124512.1| cold shock-like protein cspC [Candidatus Blochmannia vafer str. BVAF] gi|318039288|gb|ADV33838.1| cold shock-like protein cspC [Candidatus Blochmannia vafer str. BVAF] Length = 69 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP ++ DVF+H SA+ G L+EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---SDGSKDVFVHFSAIQGNGFKTLSEGQNVEFEI-QDGHKG 60 Query: 64 KYSAENLKLV 73 SA N+ + Sbjct: 61 P-SAVNVTTI 69 >gi|269103590|ref|ZP_06156287.1| cold shock protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163488|gb|EEZ41984.1| cold shock protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 68 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI+ G DVF+H SA+ S G L EGQ V + V + G Sbjct: 5 TGTVKWFNDEKGFGFIS----GVDGKDVFVHYSAIQSQGRRTLREGQSVEF-IVTDGQKG 59 Query: 64 KYSAENLKL 72 ++E + L Sbjct: 60 PQASEVVAL 68 >gi|160938586|ref|ZP_02085938.1| hypothetical protein CLOBOL_03481 [Clostridium bolteae ATCC BAA-613] gi|158438285|gb|EDP16044.1| hypothetical protein CLOBOL_03481 [Clostridium bolteae ATCC BAA-613] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KG+GFIT E E+G+D+F+H S +A+ G +L +GQ VT+D + Sbjct: 1 MNKGTVKWFNSQKGFGFITNE---ENGEDIFVHFSGIATDGFKSLEDGQSVTFDITNGNR 57 Query: 62 NGKYSAENL 70 A N+ Sbjct: 58 G--LQAVNV 64 >gi|167032005|ref|YP_001667236.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida GB-1] gi|166858493|gb|ABY96900.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQNGTVKWFNDEKGYGFITPE----SGADLFVHFRAIEGNGFKSLKEGQKVTFVAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ +++V Sbjct: 60 G--LQADQVQVV 69 >gi|27366937|ref|NP_762464.1| cold shock protein [Vibrio vulnificus CMCP6] gi|37676712|ref|NP_937108.1| cold shock protein [Vibrio vulnificus YJ016] gi|320158815|ref|YP_004191193.1| cold shock protein CspG [Vibrio vulnificus MO6-24/O] gi|27358504|gb|AAO07454.1|AE016809_216 Cold shock protein [Vibrio vulnificus CMCP6] gi|37201255|dbj|BAC97078.1| cold shock protein [Vibrio vulnificus YJ016] gi|319934127|gb|ADV88990.1| cold shock protein CspG [Vibrio vulnificus MO6-24/O] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI+ + G+DVF+H +++ S G L EGQ VT++ Q G Sbjct: 6 TGSVKWFNETKGFGFISQD---NGGNDVFVHFNSIVSTGFKTLAEGQRVTFEVEQG-KKG 61 Query: 64 KYSAENLKL 72 +A L Sbjct: 62 PQAANVTAL 70 >gi|226943910|ref|YP_002798983.1| Cold-shock DNA-binding domain-containing protein [Azotobacter vinelandii DJ] gi|226718837|gb|ACO78008.1| Cold-shock DNA-binding domain-containing protein [Azotobacter vinelandii DJ] Length = 69 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H ++ S+G +L EGQ V++ V+ Sbjct: 4 RQTGTVKWFNDEKGFGFITPE----SGPDLFVHYRSIQSSGFKSLQEGQRVSFVAVKGQK 59 Query: 62 NGKYSAENLKLV 73 A+ +++V Sbjct: 60 G--MQADEVQVV 69 >gi|332798799|ref|YP_004460298.1| cold-shock DNA-binding domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696534|gb|AEE90991.1| cold-shock DNA-binding domain protein [Tepidanaerobacter sp. Re1] Length = 66 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI EG DVF+H SA+ G L EG V +D V+ Sbjct: 2 QGKVKWFNQEKGYGFIEVEGD----KDVFVHYSAIQQEGFKTLKEGDSVEFDVVEGQKG- 56 Query: 64 KYSAENLKLV 73 AEN+ LV Sbjct: 57 -PQAENVTLV 65 >gi|315221882|ref|ZP_07863794.1| cold-shock DNA-binding domain protein [Streptococcus anginosus F0211] gi|315189115|gb|EFU22818.1| cold-shock DNA-binding domain protein [Streptococcus anginosus F0211] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ E +G DVF H SA+ S G +L EG V ++ + Sbjct: 1 MAQGTVKWFNAEKGFGFISQE----NGPDVFAHFSAIQSDGFKSLNEGDKVMFNIEKGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--LQAVNITTL 66 >gi|290476552|ref|YP_003469457.1| low-temperature-responsive gene, nucleic acid-binding domain [Xenorhabdus bovienii SS-2004] gi|289175890|emb|CBJ82693.1| low-temperature-responsive gene, nucleic acid-binding domain [Xenorhabdus bovienii SS-2004] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+PE + DVF+H SA+ L EGQ V + ++ A G Sbjct: 6 TGLVKWFDAGKGFGFISPE---DGSKDVFVHFSAIQGNDFKTLDEGQKVEFSI-ESGAKG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PSAANVIAL 70 >gi|312200423|ref|YP_004020484.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] gi|311231759|gb|ADP84614.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ +G G DVF+H SA+ + G +L EGQ V ++ VQ Sbjct: 1 MAQGAVKWFNAEKGFGFISVDG---GGPDVFVHFSAIVADGYKSLDEGQTVQFEIVQGQK 57 Query: 62 NGK 64 + Sbjct: 58 GPQ 60 >gi|224369509|ref|YP_002603673.1| CspA [Desulfobacterium autotrophicum HRM2] gi|223692226|gb|ACN15509.1| CspA [Desulfobacterium autotrophicum HRM2] Length = 66 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E +G+DVF+H S + ++G +L EG VT+D Q Sbjct: 1 MANGTVKWFNDSKGFGFIEQE----NGEDVFVHHSGINASGFKSLNEGDKVTFDIEQGQK 56 Query: 62 NGKYSAENLKLV 73 +A N+ +V Sbjct: 57 G--PAATNVTVV 66 >gi|27365451|ref|NP_760979.1| cold shock domain-containing protein CspD [Vibrio vulnificus CMCP6] gi|37680508|ref|NP_935117.1| cold shock-like protein CspD [Vibrio vulnificus YJ016] gi|27361599|gb|AAO10506.1| cold shock domain protein CspD [Vibrio vulnificus CMCP6] gi|37199256|dbj|BAC95088.1| cold shock-like protein CspD [Vibrio vulnificus YJ016] Length = 76 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + D+F H S + G L GQ VTY+ + Sbjct: 4 MATGTVKWFNNAKGFGFICSDQEE---GDIFAHYSTIQMDGYRTLKAGQQVTYEI-EKGP 59 Query: 62 NGKYSAENLKLVPKSSN 78 G +++ + L +++ Sbjct: 60 KGCHASSVVPLEVQATK 76 >gi|27366046|ref|NP_761574.1| Cold shock protein [Vibrio vulnificus CMCP6] gi|37679688|ref|NP_934297.1| cold shock protein [Vibrio vulnificus YJ016] gi|320156560|ref|YP_004188939.1| cold shock protein CspA [Vibrio vulnificus MO6-24/O] gi|27362246|gb|AAO11101.1| Cold shock protein [Vibrio vulnificus CMCP6] gi|37198433|dbj|BAC94268.1| cold shock protein [Vibrio vulnificus YJ016] gi|319931872|gb|ADV86736.1| cold shock protein CspA [Vibrio vulnificus MO6-24/O] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + G DVF+H A+ S G L EGQ V+++ + Sbjct: 6 TGTVKWFNETKGFGFISQD---NGGKDVFVHFRAIVSEGFKTLAEGQKVSFNVEEGQKG- 61 Query: 64 KYSAENLKLV 73 A N+ ++ Sbjct: 62 -PQASNVTVI 70 >gi|226355888|ref|YP_002785628.1| cold-shock DNA-binding domain-containing protein [Deinococcus deserti VCD115] gi|226317878|gb|ACO45874.1| putative Cold-shock DNA-binding domain protein [Deinococcus deserti VCD115] Length = 94 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI DVF+H SA+ S G L EG V ++ Sbjct: 1 MAQGRVKWFNVEKGYGFIE----HPGNPDVFVHYSAIQSGGFRKLNEGDEVEFEVESGQG 56 Query: 62 NGKYSAENLKL 72 N A+N+ + Sbjct: 57 NKGPQAKNVVV 67 >gi|17548223|ref|NP_521563.1| cold shock-like transcription regulator protein [Ralstonia solanacearum GMI1000] gi|300693045|ref|YP_003749018.1| cold shock DNA binding protein (transcription regulator) [Ralstonia solanacearum PSI07] gi|17430469|emb|CAD17153.1| probable cold shock-like transcription regulator protein [Ralstonia solanacearum GMI1000] gi|299068439|emb|CBJ39662.1| Cold shock DNA binding protein (transcription regulator) [Ralstonia solanacearum CMR15] gi|299075082|emb|CBJ34363.1| Cold shock DNA binding protein (transcription regulator) [Ralstonia solanacearum PSI07] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+G G D+F H S + +G L +GQ V+++ Q Sbjct: 1 MATGTVKWFNETKGFGFITPDG---GGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|330502376|ref|YP_004379245.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] gi|328916662|gb|AEB57493.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] Length = 69 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFITP +SGDD+F+H A+ S G L EGQ V++ + Sbjct: 4 RQTGTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQSDGFKTLKEGQQVSFVATRGQK 59 Query: 62 NGKYSAENLKLV 73 AE ++++ Sbjct: 60 G--MQAEEVQVI 69 >gi|312897558|ref|ZP_07756978.1| major cold shock protein CspA [Megasphaera micronuciformis F0359] gi|310621410|gb|EFQ04950.1| major cold shock protein CspA [Megasphaera micronuciformis F0359] Length = 65 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++ +KGYGFI E G DVF+H SA+ G +LTEGQ V +D V + A G Sbjct: 2 QGKVKWFSAEKGYGFIERE----DGGDVFVHFSAIQEDGFKSLTEGQEVEFDIV-DGARG 56 Query: 64 KYSAENLK 71 +A K Sbjct: 57 PQAANVTK 64 >gi|308274214|emb|CBX30813.1| Major cold shock protein [uncultured Desulfobacterium sp.] Length = 66 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E +G DVF+H SA+ + G +L EG V+++ Q + Sbjct: 1 MVDGTVKWFNDKKGFGFIEQE----NGPDVFVHHSAINATGFKSLREGDKVSFEIEQGNK 56 Query: 62 NGKYSAENLKL 72 SA N+ + Sbjct: 57 G--PSAVNVTV 65 >gi|261211013|ref|ZP_05925303.1| cold shock protein CspA [Vibrio sp. RC341] gi|260839988|gb|EEX66588.1| cold shock protein CspA [Vibrio sp. RC341] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ G D+F+H ++ S G L EGQ V ++ Q + Sbjct: 6 TGLVKWFNETKGFGFITPD---NGGADLFVHFKSIVSDGFKTLAEGQKVAFNVEQGNKG- 61 Query: 64 KYSAENLKLV 73 A N+ L+ Sbjct: 62 -PQAANVTLL 70 >gi|322421190|ref|YP_004200413.1| cold-shock DNA-binding domain-containing protein [Geobacter sp. M18] gi|320127577|gb|ADW15137.1| cold-shock DNA-binding domain protein [Geobacter sp. M18] Length = 66 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI E +G DVF+H S++ G +L EG VT++ VQ A Sbjct: 1 MANGVVKWFNDAKGFGFIEQE----NGGDVFVHFSSIQGDGFKSLAEGDSVTFEVVQG-A 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 KGPQAANVVK 65 >gi|254241055|ref|ZP_04934377.1| cold-shock protein CspD [Pseudomonas aeruginosa 2192] gi|126194433|gb|EAZ58496.1| cold-shock protein CspD [Pseudomonas aeruginosa 2192] Length = 90 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI EG E D+F H SA+ G L GQ V ++ +Q Sbjct: 1 MLSGKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPK 57 Query: 62 NGKYSAENL 70 A N+ Sbjct: 58 G--LHAINI 64 >gi|15597818|ref|NP_251312.1| cold-shock protein CspD [Pseudomonas aeruginosa PAO1] gi|116050609|ref|YP_790572.1| cold-shock protein CspD [Pseudomonas aeruginosa UCBPP-PA14] gi|218891217|ref|YP_002440083.1| cold-shock protein CspD [Pseudomonas aeruginosa LESB58] gi|254235608|ref|ZP_04928931.1| cold-shock protein CspD [Pseudomonas aeruginosa C3719] gi|296388918|ref|ZP_06878393.1| cold-shock protein CspD [Pseudomonas aeruginosa PAb1] gi|313107659|ref|ZP_07793842.1| cold-shock protein CspD [Pseudomonas aeruginosa 39016] gi|9948689|gb|AAG06010.1|AE004691_1 cold-shock protein CspD [Pseudomonas aeruginosa PAO1] gi|115585830|gb|ABJ11845.1| cold-shock protein CspD [Pseudomonas aeruginosa UCBPP-PA14] gi|126167539|gb|EAZ53050.1| cold-shock protein CspD [Pseudomonas aeruginosa C3719] gi|218771442|emb|CAW27209.1| cold-shock protein CspD [Pseudomonas aeruginosa LESB58] gi|310880344|gb|EFQ38938.1| cold-shock protein CspD [Pseudomonas aeruginosa 39016] Length = 90 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI EG E D+F H SA+ G L GQ V ++ +Q Sbjct: 1 MLSGKVKWFNNAKGYGFILAEGRDE---DLFAHYSAIQMDGYKTLKAGQPVNFEIIQGPK 57 Query: 62 NGKYSAENL 70 A N+ Sbjct: 58 G--LHAINI 64 >gi|319781907|ref|YP_004141383.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167795|gb|ADV11333.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N KG+GFITP+ + DVF+H SAV ++GL L +GQ V++D + Sbjct: 1 MPQTGTVKFFNHAKGFGFITPD---DGAKDVFVHISAVQASGLPGLEDGQKVSFDTEPDK 57 Query: 61 ANGKYSAENLKL 72 A NL + Sbjct: 58 RGKGPKAVNLSV 69 >gi|170761832|ref|YP_001785618.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree] gi|169408821|gb|ACA57232.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree] Length = 65 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFIT E G+DVF H S + S G +L EGQ V+YD V+ Sbjct: 2 NGTVKWFNGDKGFGFIT----GEDGNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKG- 56 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 57 -PQAENITII 65 >gi|266620956|ref|ZP_06113891.1| cold shock protein B [Clostridium hathewayi DSM 13479] gi|288867377|gb|EFC99675.1| cold shock protein B [Clostridium hathewayi DSM 13479] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KGYGFIT + E+G++VF+H S + + G +L +GQ VT+D Q + Sbjct: 1 MNKGTVKWFNSSKGYGFITND---ETGEEVFVHFSGIMTDGYKSLEDGQKVTFDTTQGNR 57 Query: 62 NGKYSAENL 70 A N+ Sbjct: 58 G--IQAVNV 64 >gi|254380611|ref|ZP_04995977.1| cold-shock domain containing protein [Streptomyces sp. Mg1] gi|194339522|gb|EDX20488.1| cold-shock domain containing protein [Streptomyces sp. Mg1] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q Sbjct: 1 MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELNEGQKVTFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|59712374|ref|YP_205150.1| DNA replication inhibitor [Vibrio fischeri ES114] gi|197334669|ref|YP_002156589.1| cold shock domain protein CspD [Vibrio fischeri MJ11] gi|59480475|gb|AAW86262.1| DNA replication inhibitor [Vibrio fischeri ES114] gi|197316159|gb|ACH65606.1| cold shock domain protein CspD [Vibrio fischeri MJ11] Length = 73 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG D+F H S + G L GQ VTY+ + Sbjct: 1 MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIEMEGYRTLKAGQAVTYEIHEGPK 57 Query: 62 NGKYSAENLKLVPKS 76 + A +KL+ Sbjct: 58 G--FHASEIKLLEGE 70 >gi|294470718|gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum] Length = 263 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + W+N KGYGFITP+ + G+++F+H+SA+ S G +LT G V + Q +G Sbjct: 12 TGKVNWFNDSKGYGFITPD---DDGEELFVHQSAILSEGFRSLTVGDSVEFAVTQGT-DG 67 Query: 64 KYSAENLK 71 K A N+ Sbjct: 68 KTKAVNVT 75 >gi|212712025|ref|ZP_03320153.1| hypothetical protein PROVALCAL_03101 [Providencia alcalifaciens DSM 30120] gi|212685547|gb|EEB45075.1| hypothetical protein PROVALCAL_03101 [Providencia alcalifaciens DSM 30120] Length = 66 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI+P + DVF+H SA+ S L EGQ V++ V+N A G Sbjct: 2 TGLVKWFNESKGFGFISP---ADGSKDVFVHFSAIQSDSFKTLNEGQKVSFS-VENGAKG 57 Query: 64 KYSAENLKL 72 + + L Sbjct: 58 PAAVNVVAL 66 >gi|197301371|ref|ZP_03166452.1| hypothetical protein RUMLAC_00098 [Ruminococcus lactaris ATCC 29176] gi|197299528|gb|EDY34047.1| hypothetical protein RUMLAC_00098 [Ruminococcus lactaris ATCC 29176] Length = 65 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFI+ G+D+F+H S + G +L EGQ V +D + A G Sbjct: 2 TGTVKWFNNQKGYGFIS----DSEGNDIFVHYSGLVMDGFKSLEEGQAVEFDVTEG-AKG 56 Query: 64 KYSAENLKL 72 + +KL Sbjct: 57 PQATNVVKL 65 >gi|86146448|ref|ZP_01064771.1| cold shock-like protein CspD [Vibrio sp. MED222] gi|85835711|gb|EAQ53846.1| cold shock-like protein CspD [Vibrio sp. MED222] Length = 73 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG D+F H S + G L GQ V Y+ V++ Sbjct: 1 MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIQMEGYRTLKAGQQVDYE-VESGP 56 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 57 KGSHASSVVPV 67 >gi|290968845|ref|ZP_06560382.1| cold-shock DNA-binding domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290781141|gb|EFD93732.1| cold-shock DNA-binding domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 65 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +KGYGFI + G DVF+H SA+ G +L EGQ V +D VQ A G Sbjct: 3 GKVKWFSAEKGYGFIEKD----GGGDVFVHFSAIQEDGFKSLAEGQEVEFD-VQEGARGP 57 Query: 65 YSAENLK 71 +A +K Sbjct: 58 QAANVVK 64 >gi|225387921|ref|ZP_03757685.1| hypothetical protein CLOSTASPAR_01691 [Clostridium asparagiforme DSM 15981] gi|225045964|gb|EEG56210.1| hypothetical protein CLOSTASPAR_01691 [Clostridium asparagiforme DSM 15981] Length = 86 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KG+GFIT ++E+G+D+F+H S +AS G +L +GQ VT+D + Sbjct: 20 MNKGTVKWFNSQKGFGFIT---NSENGEDIFVHYSGIASNGFKSLEDGQSVTFDITNGNR 76 Query: 62 NGKYSAENL 70 A N+ Sbjct: 77 G--LQAVNV 83 >gi|320355243|ref|YP_004196582.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus DSM 2032] gi|320123745|gb|ADW19291.1| cold-shock DNA-binding protein family [Desulfobulbus propionicus DSM 2032] Length = 66 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + G DVF+H SA+ G +L EG+ V ++ V Sbjct: 1 MAEGTVKWFNDSKGFGFIQQD----GGKDVFVHYSAIQGQGFKSLKEGERVKFEVVSGAK 56 Query: 62 NGKYSAENLKLV 73 +AEN+ + Sbjct: 57 G--PAAENVTKL 66 >gi|148977558|ref|ZP_01814137.1| cold shock-like protein CspD [Vibrionales bacterium SWAT-3] gi|145963209|gb|EDK28476.1| cold shock-like protein CspD [Vibrionales bacterium SWAT-3] Length = 73 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG D+F H S + G L GQ V Y+ V++ Sbjct: 1 MATGTVKWFNNAKGFGFICPEGEE---GDIFAHYSTIQMEGYRTLKAGQQVDYE-VESGP 56 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 57 KGSHASSVVPV 67 >gi|28897786|ref|NP_797391.1| cold shock-like protein CspD [Vibrio parahaemolyticus RIMD 2210633] gi|28805999|dbj|BAC59275.1| cold shock-like protein CspD [Vibrio parahaemolyticus RIMD 2210633] Length = 79 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + E D+F H S + G L GQ V+Y+ + Sbjct: 8 MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYEI-EKGP 63 Query: 62 NGKYSAENLKLVPKS 76 G +++ + + ++ Sbjct: 64 KGCHASSVVPIEAQA 78 >gi|120599254|ref|YP_963828.1| cold-shock DNA-binding domain-containing protein [Shewanella sp. W3-18-1] gi|146292672|ref|YP_001183096.1| cold-shock DNA-binding domain-containing protein [Shewanella putrefaciens CN-32] gi|120559347|gb|ABM25274.1| cold-shock DNA-binding protein family [Shewanella sp. W3-18-1] gi|145564362|gb|ABP75297.1| cold-shock DNA-binding protein family [Shewanella putrefaciens CN-32] gi|319425976|gb|ADV54050.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens 200] Length = 69 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V++ Q Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 60 -PQAENVTII 68 >gi|295798071|emb|CAX68890.1| Cold-shock protein DNA-binding domain [uncultured bacterium] Length = 73 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KGYGF+ P+G E G DVF+H SA+ G LT GQ V ++ V Sbjct: 6 LTKGKVKWFNNQKGYGFVNPDG--EEGRDVFVHYSAIQGDGYKTLTTGQDVEFELV-TGP 62 Query: 62 NGKYSAENLKL 72 G + +K+ Sbjct: 63 KGDMAQNVVKI 73 >gi|86358177|ref|YP_470069.1| cold shock protein [Rhizobium etli CFN 42] gi|86282279|gb|ABC91342.1| cold shock protein [Rhizobium etli CFN 42] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++K++N DKG+GFITP+G DVF+H SA+ ++G+ +L EGQ VT+D + Sbjct: 1 MATKGTVKFFNQDKGFGFITPDG---GAKDVFVHISALQASGIQSLREGQQVTFDTEPDR 57 Query: 61 ANGKYSAENLK 71 A N+ Sbjct: 58 MGKGPKAVNIS 68 >gi|21223064|ref|NP_628843.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|256785836|ref|ZP_05524267.1| cold shock protein [Streptomyces lividans TK24] gi|289769728|ref|ZP_06529106.1| cold shock protein [Streptomyces lividans TK24] gi|7321274|emb|CAB82052.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|289699927|gb|EFD67356.1| cold shock protein [Streptomyces lividans TK24] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MATGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQK 57 Query: 62 NGKYSAENLKL 72 +AEN+ L Sbjct: 58 G--PTAENIVL 66 >gi|197117042|ref|YP_002137469.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|197086402|gb|ACH37673.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] Length = 66 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI + +G DVF+H S++ G +L EG VT+D VQ A Sbjct: 1 MANGVVKWFNDAKGFGFIEQD----NGVDVFVHFSSIQGDGFKSLVEGDSVTFDVVQG-A 55 Query: 62 NGKYSAENLK 71 G +A +K Sbjct: 56 KGPQAANVVK 65 >gi|167034611|ref|YP_001669842.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida GB-1] gi|166861099|gb|ABY99506.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1] Length = 84 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G TE D+F H SA+ G L GQ VT++ +Q Sbjct: 1 MASGKVKWFNNAKGYGFINEDGGTE---DLFAHYSAIQMDGYKTLKAGQAVTFNIIQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|116671146|ref|YP_832079.1| cold-shock DNA-binding protein family protein [Arthrobacter sp. FB24] gi|220913078|ref|YP_002488387.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|116611255|gb|ABK03979.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24] gi|219859956|gb|ACL40298.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFITP+ S DVF+H S + + G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFITPDDSD---GDVFVHYSEIQTGGFKTLDENQRVQFEIGQGAK 57 Query: 62 NGKYSAENLKLV 73 A + LV Sbjct: 58 G--PQATGVTLV 67 >gi|168022724|ref|XP_001763889.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684894|gb|EDQ71293.1| predicted protein [Physcomitrella patens subsp. patens] Length = 198 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFITP+ + GDD+F+H++++ + G +L EG++V + V++ + Sbjct: 14 ETGKVKWFNSSKGFGFITPD---KGGDDLFVHQTSIHAEGFRSLREGEVVEFQ-VESSED 69 Query: 63 GKYSAENLK 71 G+ A + Sbjct: 70 GRTKALAVT 78 >gi|163751591|ref|ZP_02158812.1| cold shock domain family protein [Shewanella benthica KT99] gi|294141301|ref|YP_003557279.1| cold shock domain family protein [Shewanella violacea DSS12] gi|161328503|gb|EDP99657.1| cold shock domain family protein [Shewanella benthica KT99] gi|293327770|dbj|BAJ02501.1| cold shock domain family protein [Shewanella violacea DSS12] Length = 68 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V + Q Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAIQSDGFKTLDEGQKVQFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ +V Sbjct: 60 -PQAENVTIV 68 >gi|145300857|ref|YP_001143698.1| major cold shock protein [Aeromonas salmonicida subsp. salmonicida A449] gi|330828121|ref|YP_004391073.1| Cold shock-like protein cspI [Aeromonas veronii B565] gi|142853629|gb|ABO91950.1| major cold shock protein [Aeromonas salmonicida subsp. salmonicida A449] gi|328803257|gb|AEB48456.1| Cold shock-like protein cspI [Aeromonas veronii B565] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N +KG+GFI+P + DVF+H SA+ S L EGQ V + Q G Sbjct: 6 TGTVKFFNAEKGFGFISP---ADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 PAAANVVGL 70 >gi|310778967|ref|YP_003967300.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] gi|309748290|gb|ADO82952.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFIT +E G+D+F+H S + G L EG+ VT+D V+ Sbjct: 1 MLKGTVKWFNSEKGFGFIT----SEEGNDLFVHFSEINKPGFKTLEEGEEVTFDVVEGQ- 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 KGPQAANV 63 >gi|237747860|ref|ZP_04578340.1| cold-shock DNA-binding protein family protein [Oxalobacter formigenes OXCC13] gi|229379222|gb|EEO29313.1| cold-shock DNA-binding protein family protein [Oxalobacter formigenes OXCC13] Length = 78 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ +G D+F H S + + G +L EGQ V ++ Sbjct: 12 METGTVKWFNNSKGFGFITPD---NNGADLFAHFSEIQAGGFKSLEEGQKVKFESGVGQK 68 Query: 62 NGKYSAENLKLV 73 A+N++ + Sbjct: 69 G--PQAKNIQPM 78 >gi|239627019|ref|ZP_04670050.1| cold-shock DNA-binding domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239517165|gb|EEQ57031.1| cold-shock DNA-binding domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KG+GFIT + E+G+D+F+H S +A+ G +L +GQ VT+D + Sbjct: 1 MNKGTVKWFNSQKGFGFIT---NAENGEDIFVHFSGIATDGFKSLDDGQSVTFDITNGNR 57 Query: 62 NGKYSAENL 70 A N+ Sbjct: 58 G--LQAVNV 64 >gi|197119555|ref|YP_002139982.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|253699707|ref|YP_003020896.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] gi|197088915|gb|ACH40186.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|251774557|gb|ACT17138.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] Length = 66 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + +GDDVF+H SA+ G +L EG VT+D V+ Sbjct: 1 MANGTVKWFNDSKGFGFIEQD----NGDDVFVHFSAITGDGFKSLAEGDSVTFDVVKG-P 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 KGLQAANV 63 >gi|307730691|ref|YP_003907915.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1003] gi|323527027|ref|YP_004229180.1| cold-shock DNA-binding domain-containing protein [Burkholderia sp. CCGE1001] gi|307585226|gb|ADN58624.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1003] gi|323384029|gb|ADX56120.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1001] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + + G +L E Q V++D V+ Sbjct: 1 METGIVKWFNDAKGFGFITSDS---GGEDLFAHFSEIRTEGFKSLKENQRVSFD-VKAGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|307823940|ref|ZP_07654168.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307735234|gb|EFO06083.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 68 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 + G++KW+N KG+GFI+P ++ DVF+H SA+AS G L EGQ V YD V++ Sbjct: 1 MATGTVKWFNEAKGFGFISP---SDGSADVFVHFSAIASDGGYRTLAEGQAVKYD-VESG 56 Query: 61 ANGKYSAEN 69 G +++ Sbjct: 57 PKGPQASQV 65 >gi|84516461|ref|ZP_01003820.1| cold shock family protein [Loktanella vestfoldensis SKA53] gi|84509497|gb|EAQ05955.1| cold shock family protein [Loktanella vestfoldensis SKA53] Length = 69 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G+D+F+H SAV +G+ L + Q +T+D V+ Sbjct: 1 MPSGTVKWFNTTKGFGFIAPD---DGGNDIFVHISAVEQSGMTGLADNQKITFDLVEG-R 56 Query: 62 NGKYSAENL 70 +G+ A NL Sbjct: 57 DGRKMAGNL 65 >gi|312795412|ref|YP_004028334.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] gi|312167187|emb|CBW74190.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFIT + G+D+F H S + + G +L E Q V+++ V+N Sbjct: 1 METGIVKWFNDAKGYGFITADS---GGEDLFAHFSEIRAEGFKSLKESQRVSFE-VKNGX 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|312883132|ref|ZP_07742863.1| cold shock protein CspE [Vibrio caribbenthicus ATCC BAA-2122] gi|309369292|gb|EFP96813.1| cold shock protein CspE [Vibrio caribbenthicus ATCC BAA-2122] Length = 69 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H SA+ G L EGQ V + Q Sbjct: 6 TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAITGDGFRTLVEGQKVEFVVSQGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+K+V Sbjct: 61 -PQAENIKVV 69 >gi|293606147|ref|ZP_06688512.1| cold-shock domain family protein [Achromobacter piechaudii ATCC 43553] gi|311107159|ref|YP_003980012.1| cold-shock DNA-binding domain-containing protein 3 [Achromobacter xylosoxidans A8] gi|292815602|gb|EFF74718.1| cold-shock domain family protein [Achromobacter piechaudii ATCC 43553] gi|310761848|gb|ADP17297.1| cold-shock DNA-binding domain protein 3 [Achromobacter xylosoxidans A8] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFITPE G D+F H S + +G +L E Q V++ N Sbjct: 1 METGVVKWFNSEKGYGFITPEA---GGKDLFAHFSEIQGSGFKSLEENQRVSF-VTANGP 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPQA 61 >gi|254818580|ref|ZP_05223581.1| cold-shock DNA-binding protein family protein [Mycobacterium intracellulare ATCC 13950] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P+ + DVF+H S + G +L E Q V ++ Q A Sbjct: 1 MTQGTVKWFNGEKGFGFIAPD---DGSADVFVHYSEIQGGGYRSLEENQRVQFEVGQG-A 56 Query: 62 NGKYSAENLKL 72 G + + Sbjct: 57 KGPQATGVTAV 67 >gi|238916449|ref|YP_002929966.1| cold shock protein (beta-ribbon, CspA family) [Eubacterium eligens ATCC 27750] gi|238871809|gb|ACR71519.1| cold shock protein (beta-ribbon, CspA family) [Eubacterium eligens ATCC 27750] Length = 84 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI S ESG DVF+H S + G +L EG V +D + A G Sbjct: 21 KGTVKWFNNQKGYGFI----SDESGKDVFVHYSGLNMEGFKSLEEGAQVEFDVTEG-AKG 75 Query: 64 KYSAENLKL 72 + KL Sbjct: 76 PQATNVTKL 84 >gi|302538395|ref|ZP_07290737.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302447290|gb|EFL19106.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIATQGYRELQEGQKVNFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|149190926|ref|ZP_01869189.1| putative Cold shock-like protein [Vibrio shilonii AK1] gi|148835281|gb|EDL52255.1| putative Cold shock-like protein [Vibrio shilonii AK1] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GF+ E G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 6 NGTVKWFNEEKGFGFLAQE---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 LQAANVVAL 70 >gi|116252711|ref|YP_768549.1| cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841] gi|190892268|ref|YP_001978810.1| cold shock protein [Rhizobium etli CIAT 652] gi|209549797|ref|YP_002281714.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|218463687|ref|ZP_03503778.1| cold-shock DNA-binding domain protein [Rhizobium etli Kim 5] gi|218510076|ref|ZP_03507954.1| cold-shock DNA-binding domain protein [Rhizobium etli Brasil 5] gi|218660216|ref|ZP_03516146.1| cold-shock DNA-binding domain protein [Rhizobium etli IE4771] gi|218674774|ref|ZP_03524443.1| cold-shock DNA-binding domain protein [Rhizobium etli GR56] gi|241205217|ref|YP_002976313.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115257359|emb|CAK08454.1| putative cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841] gi|190697547|gb|ACE91632.1| cold shock protein [Rhizobium etli CIAT 652] gi|209535553|gb|ACI55488.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240859107|gb|ACS56774.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|327192667|gb|EGE59605.1| cold shock protein CspA [Rhizobium etli CNPAF512] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++K++N DKG+GFITP+G DVF+H SA+ ++G+ +L EGQ VT+D + Sbjct: 1 MATKGTVKFFNQDKGFGFITPDG---GAKDVFVHISALQASGIQSLREGQQVTFDTEPDR 57 Query: 61 ANGKYSAENLK 71 A N+ Sbjct: 58 MGKGPKAVNIS 68 >gi|47567592|ref|ZP_00238303.1| hypothetical protein BCE_G9241_1119 [Bacillus cereus G9241] gi|52144195|ref|YP_082633.1| cold shock protein [Bacillus cereus E33L] gi|206968178|ref|ZP_03229134.1| cold shock protein CspA [Bacillus cereus AH1134] gi|206976513|ref|ZP_03237419.1| cold shock protein CspA [Bacillus cereus H3081.97] gi|217958711|ref|YP_002337259.1| cold shock protein CspA [Bacillus cereus AH187] gi|218235518|ref|YP_002365918.1| cold shock protein CspA [Bacillus cereus B4264] gi|218896171|ref|YP_002444582.1| cold shock protein CspA [Bacillus cereus G9842] gi|222094856|ref|YP_002528916.1| cold shock protein [Bacillus cereus Q1] gi|225863086|ref|YP_002748464.1| cold shock protein CspA [Bacillus cereus 03BB102] gi|228899812|ref|ZP_04064058.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222] gi|228951597|ref|ZP_04113701.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228964179|ref|ZP_04125302.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|229068787|ref|ZP_04202083.1| Cold shock-like protein cspB [Bacillus cereus F65185] gi|229078421|ref|ZP_04210982.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2] gi|229108691|ref|ZP_04238301.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15] gi|229137920|ref|ZP_04266519.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26] gi|229154797|ref|ZP_04282912.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342] gi|229177647|ref|ZP_04305024.1| Cold shock-like protein cspB [Bacillus cereus 172560W] gi|229189322|ref|ZP_04316342.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876] gi|47555787|gb|EAL14127.1| unknown [Bacillus cereus G9241] gi|51977664|gb|AAU19214.1| cold shock protein [Bacillus cereus E33L] gi|206737098|gb|EDZ54245.1| cold shock protein CspA [Bacillus cereus AH1134] gi|206745196|gb|EDZ56597.1| cold shock protein CspA [Bacillus cereus H3081.97] gi|209972080|gb|ACJ03551.1| cold shock protein [Bacillus thuringiensis serovar kurstaki] gi|209972086|gb|ACJ03554.1| cold shock protein [Bacillus thuringiensis serovar israelensis] gi|209972090|gb|ACJ03556.1| cold shock protein [Bacillus thuringiensis serovar alesti] gi|209972094|gb|ACJ03558.1| cold shock protein [Bacillus mycoides] gi|210077341|gb|ACJ06957.1| cold shock protein [Bacillus thuringiensis serovar asturiensis] gi|217067961|gb|ACJ82211.1| cold shock protein CspA [Bacillus cereus AH187] gi|218163475|gb|ACK63467.1| cold shock protein CspA [Bacillus cereus B4264] gi|218545113|gb|ACK97507.1| cold shock protein CspA [Bacillus cereus G9842] gi|221238914|gb|ACM11624.1| cold shock protein [Bacillus cereus Q1] gi|225786180|gb|ACO26397.1| cold shock protein CspA [Bacillus cereus 03BB102] gi|228594116|gb|EEK51915.1| Cold shock-like protein cspB [Bacillus cereus ATCC 10876] gi|228605837|gb|EEK63281.1| Cold shock-like protein cspB [Bacillus cereus 172560W] gi|228628745|gb|EEK85457.1| Cold shock-like protein cspB [Bacillus cereus ATCC 4342] gi|228645577|gb|EEL01810.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST26] gi|228674721|gb|EEL29955.1| Cold shock-like protein cspB [Bacillus cereus Rock1-15] gi|228704843|gb|EEL57268.1| Cold shock-like protein cspB [Bacillus cereus Rock4-2] gi|228714295|gb|EEL66174.1| Cold shock-like protein cspB [Bacillus cereus F65185] gi|228795529|gb|EEM43013.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar sotto str. T04001] gi|228808058|gb|EEM54573.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228859831|gb|EEN04245.1| Cold shock-like protein cspB [Bacillus thuringiensis IBL 4222] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ ++ Sbjct: 1 MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFEI-EDG 55 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 56 NRGPQAKNVIKL 67 >gi|328880109|emb|CCA53348.1| cold shock protein [Streptomyces venezuelae ATCC 10712] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S + G LTEG+ VT+D Q Sbjct: 1 MASGTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNIQGNGYRELTEGEAVTFDITQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|313898450|ref|ZP_07831987.1| 7.4 kDa cold shock protein [Clostridium sp. HGF2] gi|312956832|gb|EFR38463.1| 7.4 kDa cold shock protein [Clostridium sp. HGF2] Length = 66 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N DKGYGFIT T++G D+F+H S + ++G L EG V ++ ND Sbjct: 1 MSTGKVKWFNADKGYGFIT----TDAGQDLFVHYSEIQTSGFRTLEEGAKVNFEINTNDR 56 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 57 G--DHAANVTVI 66 >gi|241889467|ref|ZP_04776767.1| putative cold shock protein [Gemella haemolysans ATCC 10379] gi|329768516|ref|ZP_08260004.1| cold shock protein cspA [Gemella haemolysans M341] gi|241863863|gb|EER68245.1| putative cold shock protein [Gemella haemolysans ATCC 10379] gi|328836666|gb|EGF86323.1| cold shock protein cspA [Gemella haemolysans M341] Length = 66 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI G D+F+H S++ G L EG V ++ V++ A Sbjct: 1 MKQGTVKWFNEEKGFGFIEVAGE----KDIFVHFSSIKKDGFKTLKEGDKVEFE-VEDGA 55 Query: 62 NGKYSAENLKL 72 G +A + L Sbjct: 56 RGPQAANVVVL 66 >gi|89073823|ref|ZP_01160330.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|89050358|gb|EAR55859.1| putative Cold shock-like protein [Photobacterium sp. SKA34] Length = 70 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GF+T + G DVF+H A+AS G LTEGQ V++D Q G Sbjct: 7 GLVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQGQ-KGL 62 Query: 65 YSAENLKL 72 +A + L Sbjct: 63 QAANVIAL 70 >gi|30019286|ref|NP_830917.1| cold shock protein [Bacillus cereus ATCC 14579] gi|30261242|ref|NP_843619.1| cold shock protein CspA [Bacillus anthracis str. Ames] gi|47526404|ref|YP_017753.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor'] gi|49184074|ref|YP_027326.1| cold shock protein CspA [Bacillus anthracis str. Sterne] gi|49479225|ref|YP_035367.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318514|ref|ZP_00391473.1| COG1278: Cold shock proteins [Bacillus anthracis str. A2012] gi|118476719|ref|YP_893870.1| cold-shock DNA-binding protein family protein [Bacillus thuringiensis str. Al Hakam] gi|167635405|ref|ZP_02393719.1| cold shock protein CspA [Bacillus anthracis str. A0442] gi|167640251|ref|ZP_02398517.1| cold shock protein CspA [Bacillus anthracis str. A0193] gi|170688025|ref|ZP_02879237.1| cold shock protein CspA [Bacillus anthracis str. A0465] gi|170707660|ref|ZP_02898112.1| cold shock protein CspA [Bacillus anthracis str. A0389] gi|190566579|ref|ZP_03019496.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I] gi|196036231|ref|ZP_03103630.1| cold shock protein CspA [Bacillus cereus W] gi|196037508|ref|ZP_03104819.1| cold shock protein CspA [Bacillus cereus NVH0597-99] gi|196044203|ref|ZP_03111439.1| cold shock protein CspA [Bacillus cereus 03BB108] gi|227816020|ref|YP_002816029.1| cold shock protein CspA [Bacillus anthracis str. CDC 684] gi|228913810|ref|ZP_04077435.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926273|ref|ZP_04089347.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932510|ref|ZP_04095391.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944843|ref|ZP_04107206.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090176|ref|ZP_04221425.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42] gi|229120758|ref|ZP_04250001.1| Cold shock-like protein cspB [Bacillus cereus 95/8201] gi|229126542|ref|ZP_04255556.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4] gi|229183437|ref|ZP_04310662.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1] gi|229604794|ref|YP_002865665.1| cold shock protein CspA [Bacillus anthracis str. A0248] gi|254682697|ref|ZP_05146558.1| cold shock protein CspA [Bacillus anthracis str. CNEVA-9066] gi|254725490|ref|ZP_05187272.1| cold shock protein CspA [Bacillus anthracis str. A1055] gi|254734115|ref|ZP_05191828.1| cold shock protein CspA [Bacillus anthracis str. Western North America USA6153] gi|254740241|ref|ZP_05197933.1| cold shock protein CspA [Bacillus anthracis str. Kruger B] gi|254753581|ref|ZP_05205617.1| cold shock protein CspA [Bacillus anthracis str. Vollum] gi|254758678|ref|ZP_05210705.1| cold shock protein CspA [Bacillus anthracis str. Australia 94] gi|301052771|ref|YP_003790982.1| cold shock protein [Bacillus anthracis CI] gi|49035524|sp|Q81GQ6|CSPA_BACCR RecName: Full=Major cold shock protein CspA gi|49035527|sp|Q81TW8|CSPA_BACAN RecName: Full=Major cold shock protein CspA gi|29894829|gb|AAP08118.1| Cold shock protein [Bacillus cereus ATCC 14579] gi|30254856|gb|AAP25105.1| cold shock protein CspA [Bacillus anthracis str. Ames] gi|47501552|gb|AAT30228.1| cold shock protein CspA [Bacillus anthracis str. 'Ames Ancestor'] gi|49178001|gb|AAT53377.1| cold shock protein CspA [Bacillus anthracis str. Sterne] gi|49330781|gb|AAT61427.1| cold shock protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415944|gb|ABK84363.1| cold-shock DNA-binding protein family [Bacillus thuringiensis str. Al Hakam] gi|167511852|gb|EDR87232.1| cold shock protein CspA [Bacillus anthracis str. A0193] gi|167529233|gb|EDR91986.1| cold shock protein CspA [Bacillus anthracis str. A0442] gi|170127435|gb|EDS96310.1| cold shock protein CspA [Bacillus anthracis str. A0389] gi|170667920|gb|EDT18671.1| cold shock protein CspA [Bacillus anthracis str. A0465] gi|190562131|gb|EDV16099.1| cold shock protein CspA [Bacillus anthracis Tsiankovskii-I] gi|195991206|gb|EDX55175.1| cold shock protein CspA [Bacillus cereus W] gi|196024842|gb|EDX63513.1| cold shock protein CspA [Bacillus cereus 03BB108] gi|196031750|gb|EDX70346.1| cold shock protein CspA [Bacillus cereus NVH0597-99] gi|227005778|gb|ACP15521.1| cold shock protein CspA [Bacillus anthracis str. CDC 684] gi|228600021|gb|EEK57616.1| Cold shock-like protein cspB [Bacillus cereus BGSC 6E1] gi|228656931|gb|EEL12755.1| Cold shock-like protein cspB [Bacillus cereus BDRD-Cer4] gi|228662763|gb|EEL18360.1| Cold shock-like protein cspB [Bacillus cereus 95/8201] gi|228693159|gb|EEL46871.1| Cold shock-like protein cspB [Bacillus cereus Rock3-42] gi|228814871|gb|EEM61129.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827200|gb|EEM72953.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833370|gb|EEM78933.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845749|gb|EEM90775.1| Cold shock-like protein cspB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269202|gb|ACQ50839.1| cold shock protein CspA [Bacillus anthracis str. A0248] gi|300374940|gb|ADK03844.1| cold shock protein [Bacillus cereus biovar anthracis str. CI] Length = 67 Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ + + Sbjct: 1 MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFEIEEGN 56 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 57 -RGPQAKNVIKL 67 >gi|319778247|ref|YP_004129160.1| cold-shock DNA-binding domain protein [Taylorella equigenitalis MCE9] gi|317108271|gb|ADU91017.1| cold-shock DNA-binding domain protein [Taylorella equigenitalis MCE9] Length = 76 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GF+TPEGS E D+F+H S++ G L E Q ++++ + Sbjct: 12 TGTVKWFNDTKGFGFVTPEGSNE---DLFIHFSSIQMEGFKTLKENQKISFEITEGPKG- 67 Query: 64 KYSAENLK 71 A N++ Sbjct: 68 -KQAINIQ 74 >gi|282863823|ref|ZP_06272881.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|282561524|gb|EFB67068.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF H S + + G L EGQ V +D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQEG---GGADVFAHYSNILAQGFRELQEGQKVNFDVTQGQK 57 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 58 G--PQAENIT 65 >gi|294630457|ref|ZP_06709017.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292833790|gb|EFF92139.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q Sbjct: 1 MATGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSNIATQGFRELLEGQKVTFDIGQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|167837494|ref|ZP_02464377.1| cold-shock domain family protein [Burkholderia thailandensis MSMB43] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V+++ V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIKMEGFKTLKENQRVSFE-VKTGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|319787046|ref|YP_004146521.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317465558|gb|ADV27290.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFITPE SG D+F+H ++ +G +L EGQ V++ VQ Sbjct: 4 RQTGTVKWFNDAKGFGFITPE----SGADLFVHFRSIQGSGFKSLQEGQKVSFIVVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++ + Sbjct: 60 G--LQADQVQAL 69 >gi|258620199|ref|ZP_05715238.1| cold shock transcriptional regulator [Vibrio mimicus VM573] gi|258624440|ref|ZP_05719387.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603] gi|262171708|ref|ZP_06039386.1| cold shock protein CspA [Vibrio mimicus MB-451] gi|258583287|gb|EEW08089.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603] gi|258587557|gb|EEW12267.1| cold shock transcriptional regulator [Vibrio mimicus VM573] gi|261892784|gb|EEY38770.1| cold shock protein CspA [Vibrio mimicus MB-451] Length = 70 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ G D+F+H ++ S G L+EGQ V ++ Q + Sbjct: 6 TGLVKWFNETKGFGFITPD---NGGADLFVHFKSIVSDGFKTLSEGQKVAFNVEQGNKG- 61 Query: 64 KYSAENLKLV 73 A N+ L+ Sbjct: 62 -PQAANVTLL 70 >gi|225872220|ref|YP_002753675.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] gi|225791808|gb|ACO31898.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] Length = 66 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GF+ S + G+DVF+H +A+ + G +L EGQ V +D V+ Sbjct: 1 MEQGTVKWFNDAKGFGFL----SRQGGEDVFVHYTAIKTNGFRSLQEGQAVQFDVVKGPK 56 Query: 62 NGKYSAENLKLV 73 + A+N++++ Sbjct: 57 G--WQADNVQVL 66 >gi|238924737|ref|YP_002938253.1| putative cold-shock DNA-binding domain protein [Eubacterium rectale ATCC 33656] gi|238876412|gb|ACR76119.1| putative cold-shock DNA-binding domain protein [Eubacterium rectale ATCC 33656] gi|291526111|emb|CBK91698.1| cold-shock DNA-binding protein family [Eubacterium rectale DSM 17629] gi|291527154|emb|CBK92740.1| cold-shock DNA-binding protein family [Eubacterium rectale M104/1] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFIT E G DVF+H S + G L EG V +D + A Sbjct: 1 MSKGTVKWFNNQKGYGFIT----AEDGKDVFVHFSGLNMEGFKTLEEGAAVEFDIT-DGA 55 Query: 62 NGKYSAENLKLVP 74 G A N+++V Sbjct: 56 KGPQ-AVNVEVVK 67 >gi|209519137|ref|ZP_03267942.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] gi|209500437|gb|EEA00488.1| cold-shock DNA-binding domain protein [Burkholderia sp. H160] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + S G +L E Q V+++ + Sbjct: 1 METGVVKWFNDAKGFGFITSDA---GGEDLFAHFSEIRSEGFKSLKENQRVSFEI-KTSP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|148266030|ref|YP_001232736.1| cold-shock DNA-binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146399530|gb|ABQ28163.1| cold-shock DNA-binding protein family [Geobacter uraniireducens Rf4] Length = 66 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI E +G+DVF+H SA+ G L EG VT+D V+ Sbjct: 1 MEKGTVKWFNESKGFGFIARE----NGEDVFVHFSAITGEGFKTLAEGDTVTFDVVKG-P 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 KGLQAANVKKV 66 >gi|330448696|ref|ZP_08312344.1| cold-shock domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492887|dbj|GAA06841.1| cold-shock domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+ G L EGQ V++D Q G Sbjct: 5 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVSFDIEQGQ-KG 60 Query: 64 KYSAEN 69 +A Sbjct: 61 PQAANV 66 >gi|295677335|ref|YP_003605859.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] gi|295437178|gb|ADG16348.1| cold-shock DNA-binding domain protein [Burkholderia sp. CCGE1002] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + S G +L E Q V+++ V+ Sbjct: 1 METGVVKWFNDAKGFGFITSDA---GGEDLFAHFSEIRSEGFKSLKENQRVSFE-VKTSP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|218512700|ref|ZP_03509540.1| cold-shock DNA-binding domain protein [Rhizobium etli 8C-3] Length = 92 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI P+ G D+F+H SAV ++GL LTE Q V++D + Sbjct: 1 MAETGTVKFFNTDKGFGFIKPDR---GGADIFVHISAVQASGLAGLTENQNVSFDTEPDR 57 Query: 61 ANGKYSAENLKLVPK 75 A L++ + Sbjct: 58 RGKGPQAVILQIAAE 72 >gi|126173937|ref|YP_001050086.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS155] gi|153000230|ref|YP_001365911.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS185] gi|160874863|ref|YP_001554179.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS195] gi|217973821|ref|YP_002358572.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS223] gi|304409808|ref|ZP_07391428.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183] gi|307304164|ref|ZP_07583917.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175] gi|125997142|gb|ABN61217.1| cold-shock DNA-binding protein family [Shewanella baltica OS155] gi|151364848|gb|ABS07848.1| putative cold-shock DNA-binding domain protein [Shewanella baltica OS185] gi|160860385|gb|ABX48919.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195] gi|217498956|gb|ACK47149.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223] gi|304352326|gb|EFM16724.1| cold-shock DNA-binding domain protein [Shewanella baltica OS183] gi|306913062|gb|EFN43485.1| cold-shock DNA-binding domain protein [Shewanella baltica BA175] gi|315267099|gb|ADT93952.1| cold-shock DNA-binding domain protein [Shewanella baltica OS678] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V++ Q Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ +V Sbjct: 60 -PQAENVTIV 68 >gi|120599534|ref|YP_964108.1| cold-shock DNA-binding domain-containing protein [Shewanella sp. W3-18-1] gi|146292469|ref|YP_001182893.1| cold-shock DNA-binding domain-containing protein [Shewanella putrefaciens CN-32] gi|120559627|gb|ABM25554.1| cold-shock DNA-binding protein family [Shewanella sp. W3-18-1] gi|145564159|gb|ABP75094.1| cold-shock DNA-binding protein family [Shewanella putrefaciens CN-32] gi|319425771|gb|ADV53845.1| cold-shock DNA-binding domain protein [Shewanella putrefaciens 200] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFI+P+ G D F+H A+ S G L EGQ V++D Q G Sbjct: 5 TGVVKWFNEEKGFGFISPD---NGGADAFVHFRAIVSEGFKTLGEGQKVSFDIEQGQ-KG 60 Query: 64 KYSAENLKL 72 +A + L Sbjct: 61 PQAANVVVL 69 >gi|325499887|gb|EGC97746.1| cold shock-like protein cspB [Escherichia fergusonii ECD227] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + DVF+H SA+ + L EGQ VT+ V++ A G Sbjct: 2 TGLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNFRTLFEGQKVTFS-VESGAKG 57 Query: 64 KYSAENL 70 +A + Sbjct: 58 PAAANVI 64 >gi|221369643|ref|YP_002520739.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131] gi|221162695|gb|ACM03666.1| Cold-shock DNA-binding protein [Rhodobacter sphaeroides KD131] Length = 68 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+G I P DVF+H +A+ AG+ L +GQ VTYD + D Sbjct: 1 MANGTVKWFNSTKGFGSIAP---AHGSKDVFVHVTALERAGIRQLNDGQAVTYDM-ETDR 56 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 57 NGRESAMNLVL 67 >gi|145297910|ref|YP_001140751.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850682|gb|ABO89003.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI G DVF+H S++ S G L EGQ V + Q Sbjct: 4 IRTGQVKWFNETKGFGFIEQSQ----GPDVFVHFSSIQSTGFKTLAEGQKVQFTVTQGQK 59 Query: 62 NGKYSAENLKLV 73 AEN+ L+ Sbjct: 60 G--PQAENVTLL 69 >gi|15894094|ref|NP_347443.1| cold shock protein [Clostridium acetobutylicum ATCC 824] gi|15023696|gb|AAK78783.1|AE007596_4 Cold shock protein [Clostridium acetobutylicum ATCC 824] gi|325508221|gb|ADZ19857.1| Cold shock protein [Clostridium acetobutylicum EA 2018] Length = 65 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT E G+DVF H S + G L EGQ V+YD V+ Sbjct: 2 TGTVKWFNGEKGFGFIT----GEDGNDVFAHYSQINVDGYKTLEEGQKVSYDVVKGPKG- 56 Query: 64 KYSAENLKL 72 AEN+ L Sbjct: 57 -LQAENITL 64 >gi|73663810|ref|YP_302589.1| cold shock protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496387|dbj|BAE19644.1| cold shock protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 66 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E +G D+F+H S + + G +L EGQ V +D + Sbjct: 1 MNNGTVKWFNAEKGFGFIERE----NGSDLFVHFSGIVAEGYKSLEEGQKVEFDITEGQ- 55 Query: 62 NGKYSAENLKL 72 G+ + + + Sbjct: 56 RGEQATNVVTV 66 >gi|33519902|ref|NP_878734.1| cold shock-like protein CspC [Candidatus Blochmannia floridanus] gi|33504247|emb|CAD83510.1| cold shock-like protein CspC [Candidatus Blochmannia floridanus] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP + DVF+H SA+ G L+EGQ V ++ VQ+ G Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLSEGQNVEFE-VQDGHKG 60 Query: 64 KYSAENLKL 72 + L Sbjct: 61 PSAVNVTSL 69 >gi|330815856|ref|YP_004359561.1| cold-shock DNA-binding protein family protein [Burkholderia gladioli BSR3] gi|327368249|gb|AEA59605.1| cold-shock DNA-binding protein family protein [Burkholderia gladioli BSR3] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIKMDGFKTLKENQRVSFD-VKTGP 56 Query: 62 NGKYSAENLKLV 73 GK +A N++ V Sbjct: 57 KGKQAA-NIQAV 67 >gi|168031977|ref|XP_001768496.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680209|gb|EDQ66647.1| predicted protein [Physcomitrella patens subsp. patens] Length = 178 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFITP+ + G+D+F+H++++ + G +L EG++V + V++ + Sbjct: 3 ETGKVKWFNSSKGFGFITPD---KGGEDLFVHQTSIHAEGFRSLREGEVVEFQ-VESSED 58 Query: 63 GKYSAENLK 71 G+ A + Sbjct: 59 GRTKALAVT 67 >gi|302532074|ref|ZP_07284416.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302440969|gb|EFL12785.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MAAGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELNEGQKVNFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|197116608|ref|YP_002137035.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|197085968|gb|ACH37239.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] Length = 66 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI E +G+DVF+H SA+ G +L EG VT+D VQ Sbjct: 1 MAKGVVKWFNDSKGFGFIEQE----NGEDVFVHFSAIQGDGFKSLAEGDSVTFD-VQQGP 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGLQAANVTRV 66 >gi|119945576|ref|YP_943256.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119864180|gb|ABM03657.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q Sbjct: 6 QGTVKWFNESKGFGFIEQ----ASGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQGQKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -PQAENI 66 >gi|238898407|ref|YP_002924088.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466166|gb|ACQ67940.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 72 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +GS+KW+N KG+GFITP + DVF+H SA+ S+G L EGQ+V + +N A Sbjct: 6 QKGSVKWFNESKGFGFITP---ADGSKDVFVHFSAIDSSGFKTLGEGQMVEFSI-ENGAK 61 Query: 63 GKYSAENLKLV 73 G +A N+ ++ Sbjct: 62 GPSAA-NVSVI 71 >gi|111022638|ref|YP_705610.1| cold shock protein [Rhodococcus jostii RHA1] gi|110822168|gb|ABG97452.1| cold shock protein [Rhodococcus jostii RHA1] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI PE + DVF+H S + S G L E Q V+++ Q + Sbjct: 1 MAEGIVKWFNSEKGFGFIAPE---DGSADVFVHYSEIQSGGFRTLEENQRVSFEIGQGNK 57 Query: 62 NGKYSAENLKLV 73 A + L+ Sbjct: 58 G--PQATGVTLI 67 >gi|77458156|ref|YP_347661.1| cold-shock DNA-binding protein family protein [Pseudomonas fluorescens Pf0-1] gi|77382159|gb|ABA73672.1| major cold shock protein [Pseudomonas fluorescens Pf0-1] Length = 70 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITP+G GDD+F+H A+ + G +L EGQ V++ + Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIETDGFKSLKEGQTVSF-VAEKGQ 59 Query: 62 NGKYSAEN 69 G +A+ Sbjct: 60 KGMQAAQV 67 >gi|332993404|gb|AEF03459.1| stress response protein CspD [Alteromonas sp. SN2] Length = 72 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI PE + G+D+F H S + G +L GQ VTYD Q Sbjct: 1 MAIGKVKWFNNAKGFGFIVPE---DGGEDIFAHYSTIQMEGYRSLKAGQEVTYDVQQGPK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--LHAENI 64 >gi|83645150|ref|YP_433585.1| cold shock protein [Hahella chejuensis KCTC 2396] gi|83633193|gb|ABC29160.1| Cold shock protein [Hahella chejuensis KCTC 2396] Length = 116 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTES--GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 + +G +KW+N KGYGFI + +D+F+H S++ G L GQ V +D Q Sbjct: 1 MPQGKVKWFNNAKGYGFIIADEGNGDLCKEDLFVHFSSIQMEGYKTLKAGQAVNFD-AQP 59 Query: 60 DANGKYSAENLKLVPKSSN 78 G ++ + +VP S Sbjct: 60 SGKGFHA---VNIVPLESE 75 >gi|163857107|ref|YP_001631405.1| cold shock-like protein [Bordetella petrii DSM 12804] gi|163260835|emb|CAP43137.1| cold shock-like protein [Bordetella petrii] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFITPE G D+F H S + + G +L E Q V++ N Sbjct: 1 METGVVKWFNSEKGYGFITPEA---GGKDLFAHFSEIQANGFKSLEENQRVSF-VTANGP 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPQA 61 >gi|117619984|ref|YP_857934.1| hypothetical protein AHA_3450 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561391|gb|ABK38339.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI G DVF+H S++ SAG L EGQ V + Q Sbjct: 4 IRTGQVKWFNETKGFGFIEQSQ----GPDVFVHFSSIQSAGFKTLAEGQKVQFTVTQGKK 59 Query: 62 NGKYSAENLKLV 73 AEN+ L+ Sbjct: 60 G--PQAENVTLL 69 >gi|116748887|ref|YP_845574.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697951|gb|ABK17139.1| cold-shock DNA-binding protein family [Syntrophobacter fumaroxidans MPOB] Length = 66 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI E G DVF+H SA+ G +L EG V++ + A Sbjct: 1 MAEGRVKWFNDSKGFGFIERE----GGSDVFVHYSAIEGEGFKSLAEGDRVSF-VAEQGA 55 Query: 62 NGKYSAENLKL 72 G +A+ KL Sbjct: 56 KGPQAAQVRKL 66 >gi|21222160|ref|NP_627939.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|256786753|ref|ZP_05525184.1| cold shock protein [Streptomyces lividans TK24] gi|289770647|ref|ZP_06530025.1| cold shock protein [Streptomyces lividans TK24] gi|5732895|gb|AAD49327.1|AF162937_1 F40 [Streptomyces coelicolor A3(2)] gi|7211015|emb|CAB76995.1| cold shock protein [Streptomyces coelicolor A3(2)] gi|289700846|gb|EFD68275.1| cold shock protein [Streptomyces lividans TK24] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MASGTVKWFNAEKGFGFIAQDG---GGADVFAHYSNIATQGFRELQEGQRVNFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|15601687|ref|NP_233318.1| cold shock domain-contain protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586695|ref|ZP_01676479.1| cold shock domain family protein [Vibrio cholerae 2740-80] gi|121726380|ref|ZP_01679654.1| cold shock domain family protein [Vibrio cholerae V52] gi|147671933|ref|YP_001215147.1| cold shock domain-contain protein [Vibrio cholerae O395] gi|153212370|ref|ZP_01948152.1| cold shock domain family protein [Vibrio cholerae 1587] gi|153801420|ref|ZP_01956006.1| cold shock domain family protein [Vibrio cholerae MZO-3] gi|153818328|ref|ZP_01970995.1| cold shock domain family protein [Vibrio cholerae NCTC 8457] gi|153821071|ref|ZP_01973738.1| cold shock domain family protein [Vibrio cholerae B33] gi|153828039|ref|ZP_01980706.1| cold shock domain family protein [Vibrio cholerae 623-39] gi|227812499|ref|YP_002812509.1| cold shock domain family protein [Vibrio cholerae M66-2] gi|229505926|ref|ZP_04395435.1| cold shock protein CspA [Vibrio cholerae BX 330286] gi|229510220|ref|ZP_04399700.1| cold shock protein CspA [Vibrio cholerae B33] gi|229514346|ref|ZP_04403807.1| cold shock protein CspA [Vibrio cholerae TMA 21] gi|229517650|ref|ZP_04407095.1| cold shock protein CspA [Vibrio cholerae RC9] gi|229522460|ref|ZP_04411876.1| cold shock protein CspA [Vibrio cholerae TM 11079-80] gi|229526515|ref|ZP_04415919.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426] gi|229528166|ref|ZP_04417557.1| cold shock protein CspA [Vibrio cholerae 12129(1)] gi|229605458|ref|YP_002876162.1| cold shock protein CspA [Vibrio cholerae MJ-1236] gi|254224759|ref|ZP_04918375.1| cold shock domain family protein [Vibrio cholerae V51] gi|254284560|ref|ZP_04959527.1| cold shock domain family protein [Vibrio cholerae AM-19226] gi|254850097|ref|ZP_05239447.1| cold-shock protein CspV [Vibrio cholerae MO10] gi|255746324|ref|ZP_05420271.1| cold shock protein CspA [Vibrio cholera CIRS 101] gi|262158205|ref|ZP_06029323.1| cold shock protein CspA [Vibrio cholerae INDRE 91/1] gi|262169196|ref|ZP_06036889.1| cold shock protein CspA [Vibrio cholerae RC27] gi|297580016|ref|ZP_06941943.1| cold-shock protein CspV [Vibrio cholerae RC385] gi|298499709|ref|ZP_07009515.1| cold shock domain family protein [Vibrio cholerae MAK 757] gi|20138009|sp|Q9KL16|CSPV_VIBCH RecName: Full=Cold shock protein CspV gi|15425982|gb|AAK97640.1|AF409091_1 cold-shock protein CspV [Vibrio cholerae] gi|9658370|gb|AAF96830.1| cold shock domain family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549123|gb|EAX59158.1| cold shock domain family protein [Vibrio cholerae 2740-80] gi|121631128|gb|EAX63503.1| cold shock domain family protein [Vibrio cholerae V52] gi|124116578|gb|EAY35398.1| cold shock domain family protein [Vibrio cholerae 1587] gi|124123086|gb|EAY41829.1| cold shock domain family protein [Vibrio cholerae MZO-3] gi|125622822|gb|EAZ51140.1| cold shock domain family protein [Vibrio cholerae V51] gi|126511141|gb|EAZ73735.1| cold shock domain family protein [Vibrio cholerae NCTC 8457] gi|126521445|gb|EAZ78668.1| cold shock domain family protein [Vibrio cholerae B33] gi|146314316|gb|ABQ18856.1| cold shock domain family protein [Vibrio cholerae O395] gi|148876448|gb|EDL74583.1| cold shock domain family protein [Vibrio cholerae 623-39] gi|150425345|gb|EDN17121.1| cold shock domain family protein [Vibrio cholerae AM-19226] gi|227011641|gb|ACP07852.1| cold shock domain family protein [Vibrio cholerae M66-2] gi|227015580|gb|ACP11789.1| cold shock domain family protein [Vibrio cholerae O395] gi|229334528|gb|EEO00014.1| cold shock protein CspA [Vibrio cholerae 12129(1)] gi|229336673|gb|EEO01691.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426] gi|229340445|gb|EEO05451.1| cold shock protein CspA [Vibrio cholerae TM 11079-80] gi|229345686|gb|EEO10659.1| cold shock protein CspA [Vibrio cholerae RC9] gi|229348326|gb|EEO13284.1| cold shock protein CspA [Vibrio cholerae TMA 21] gi|229352665|gb|EEO17605.1| cold shock protein CspA [Vibrio cholerae B33] gi|229356277|gb|EEO21195.1| cold shock protein CspA [Vibrio cholerae BX 330286] gi|229371944|gb|ACQ62366.1| cold shock protein CspA [Vibrio cholerae MJ-1236] gi|254845802|gb|EET24216.1| cold-shock protein CspV [Vibrio cholerae MO10] gi|255736078|gb|EET91476.1| cold shock protein CspA [Vibrio cholera CIRS 101] gi|262022477|gb|EEY41185.1| cold shock protein CspA [Vibrio cholerae RC27] gi|262030083|gb|EEY48729.1| cold shock protein CspA [Vibrio cholerae INDRE 91/1] gi|297535662|gb|EFH74496.1| cold-shock protein CspV [Vibrio cholerae RC385] gi|297541690|gb|EFH77741.1| cold shock domain family protein [Vibrio cholerae MAK 757] Length = 70 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF+T + G+DVF+H +++ S G L EGQ V++ V+ G Sbjct: 6 TGSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLAEGQRVSF-IVEQGKKG 61 Query: 64 KYSAENLKL 72 ++ + L Sbjct: 62 PQASNVVAL 70 >gi|161525563|ref|YP_001580575.1| cold-shock DNA-binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189349709|ref|YP_001945337.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|221201211|ref|ZP_03574251.1| conserved domain protein [Burkholderia multivorans CGD2M] gi|221206335|ref|ZP_03579348.1| conserved domain protein [Burkholderia multivorans CGD2] gi|221213617|ref|ZP_03586591.1| conserved domain protein [Burkholderia multivorans CGD1] gi|160342992|gb|ABX16078.1| cold-shock DNA-binding domain protein [Burkholderia multivorans ATCC 17616] gi|189333731|dbj|BAG42801.1| CspA family cold shock protein [Burkholderia multivorans ATCC 17616] gi|221166406|gb|EED98878.1| conserved domain protein [Burkholderia multivorans CGD1] gi|221173644|gb|EEE06078.1| conserved domain protein [Burkholderia multivorans CGD2] gi|221179061|gb|EEE11468.1| conserved domain protein [Burkholderia multivorans CGD2M] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|146306439|ref|YP_001186904.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina ymp] gi|145574640|gb|ABP84172.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFITP +SGDD+F+H A+ S G +L EGQ V++ + Sbjct: 4 RQTGTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSFVATRGQK 59 Query: 62 NGKYSAENLKLV 73 AE ++++ Sbjct: 60 G--MQAEEVQVI 69 >gi|91200067|emb|CAJ73110.1| strongly similar to cold shock protein A [Candidatus Kuenenia stuttgartiensis] Length = 66 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI+ + +G+DVF+H++A+ G L EG V ++ V+ D Sbjct: 1 MPQGTVKWFNDSKGFGFISQD----NGEDVFVHQTAIECEGFRTLAEGDKVEFEVVK-DQ 55 Query: 62 NGKYSAENLKL 72 G + + +KL Sbjct: 56 KGYKATKVVKL 66 >gi|254477809|ref|ZP_05091195.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp. R11] gi|214032052|gb|EEB72887.1| putative 'Cold-shock' DNA-binding domain protein [Ruegeria sp. R11] Length = 68 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PEG G DVF+H S V +GL L + Q V ++ ++ Sbjct: 1 MANGTVKWFNTTKGYGFIEPEG---GGKDVFVHISQVERSGLTGLADNQKVEFEMIEG-R 56 Query: 62 NGKYSAENLK 71 +G+ A ++ Sbjct: 57 DGRQMASEIR 66 >gi|197119112|ref|YP_002139539.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|197088472|gb|ACH39743.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] Length = 68 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI + +G+DVF+H SA+ G +L EG+ V++D N Sbjct: 1 MAQGKVKWFNDAKGFGFIEQD----NGEDVFVHFSAITGDGFKSLAEGESVSFDVT-NGP 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 KGLQAANVKKL 66 >gi|186474053|ref|YP_001861395.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184196385|gb|ACC74349.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ + GDD+F H S V G +L E Q V +D Q Sbjct: 1 MAEGTVKWFNDAKGFGFITPD---DGGDDLFAHFSEVRVNGFKSLQENQRVKFDVKQG-P 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|86748304|ref|YP_484800.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris HaA2] gi|86571332|gb|ABD05889.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris HaA2] Length = 70 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M + G++K++N ++GYGFI P+ + G DVF+H +AV AGL +LTEGQ ++++ + Sbjct: 1 MPNTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57 Query: 61 ANGKYSAENLKL 72 A NL + Sbjct: 58 KGKGPKAVNLVI 69 >gi|288574158|ref|ZP_06392515.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569899|gb|EFC91456.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 66 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFIT E G D F+H SA+ G L EGQ VT+ +N Sbjct: 1 MTQGTVKWFNGTKGYGFIT----GEDGKDYFVHFSAINIDGFKTLDEGQAVTFTI-ENGQ 55 Query: 62 NGKYSAENLKLV 73 G A N+ V Sbjct: 56 KGPQ-ASNVSPV 66 >gi|119775105|ref|YP_927845.1| cold-shock DNA-binding domain-containing protein [Shewanella amazonensis SB2B] gi|119767605|gb|ABM00176.1| cold-shock DNA-binding protein family [Shewanella amazonensis SB2B] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI E G DVF+H A+ + G L EGQ V++ Q Sbjct: 5 TGVVKWFNADKGFGFIAQEA----GPDVFVHFRAINTDGFKTLDEGQKVSFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 60 -PQAENVTVI 68 >gi|24374322|ref|NP_718365.1| cold shock domain-contain protein [Shewanella oneidensis MR-1] gi|113970742|ref|YP_734535.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-4] gi|114047969|ref|YP_738519.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-7] gi|117921010|ref|YP_870202.1| cold-shock DNA-binding protein family protein [Shewanella sp. ANA-3] gi|24348871|gb|AAN55809.1|AE015718_1 cold shock domain family protein [Shewanella oneidensis MR-1] gi|113885426|gb|ABI39478.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4] gi|113889411|gb|ABI43462.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7] gi|117613342|gb|ABK48796.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V++ Q Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 60 -PQAENVTVI 68 >gi|269139481|ref|YP_003296182.1| major cold shock protein [Edwardsiella tarda EIB202] gi|267985142|gb|ACY84971.1| major cold shock protein [Edwardsiella tarda EIB202] gi|304559373|gb|ADM42037.1| Cold shock protein CspG [Edwardsiella tarda FL6-60] Length = 71 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + V+N G Sbjct: 6 TGSVKWFNADKGFGFISP---ADGSKDVFVHFSAIQSNEFRTLDEGQQVEFS-VENGPKG 61 Query: 64 KYSAENLKL 72 + + + Sbjct: 62 PSAVNVVAI 70 >gi|90578292|ref|ZP_01234103.1| putative Cold shock-like protein [Vibrio angustum S14] gi|90441378|gb|EAS66558.1| putative Cold shock-like protein [Vibrio angustum S14] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+ G L EGQ V++D Q G Sbjct: 5 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVSFDIEQGQ-KG 60 Query: 64 KYSAEN 69 +A Sbjct: 61 PQAANV 66 >gi|301062851|ref|ZP_07203444.1| cold shock protein CspD [delta proteobacterium NaphS2] gi|300443051|gb|EFK07223.1| cold shock protein CspD [delta proteobacterium NaphS2] Length = 66 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ KG+GFI E G DVF+H SA+ G +L EG V++D + Sbjct: 1 MANGTVKWFSDQKGFGFIEQE----DGPDVFVHHSAILMEGFKSLNEGDQVSFDIEEGQK 56 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 57 G--PAAANVKVM 66 >gi|227872733|ref|ZP_03991058.1| cold shock protein CspA [Oribacterium sinus F0268] gi|227841428|gb|EEJ51733.1| cold shock protein CspA [Oribacterium sinus F0268] Length = 65 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI+ E+G DVF+H S ++ G +L EGQ V ++ V + A G Sbjct: 2 KGTVKWFNNQKGYGFIS----DETGKDVFVHYSGLSGDGFKSLEEGQAVEFEVV-DGAKG 56 Query: 64 KYSAENLKL 72 + +KL Sbjct: 57 PQATNVVKL 65 >gi|261250705|ref|ZP_05943279.1| putative Cold shock-like protein [Vibrio orientalis CIP 102891] gi|260937578|gb|EEX93566.1| putative Cold shock-like protein [Vibrio orientalis CIP 102891] Length = 70 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF+T + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 6 TGSVKWFNETKGFGFLTQD---NGGADVFVHFRAIASDGFKTLNEGQKVSFEVEQGQ-KG 61 Query: 64 KYSAENL 70 +A + Sbjct: 62 LQAANVV 68 >gi|253988509|ref|YP_003039865.1| cold shock-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637909|emb|CAR66538.1| cold shock-like protein (cps-i) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779959|emb|CAQ83120.1| cold shock-like protein (cps-i) [Photorhabdus asymbiotica] Length = 71 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI+P DVF+H SA+ S L EGQ V++ +N A G Sbjct: 6 TGSVKWFNNDKGFGFISP---KNGSKDVFVHYSAIQSNNFKTLEEGQEVSFSI-ENGAKG 61 Query: 64 KYSAENLKLV 73 SA N+ ++ Sbjct: 62 P-SAVNVIVL 70 >gi|16262549|ref|NP_435342.1| CspA5 cold shock protein transcriptional regulator [Sinorhizobium meliloti 1021] gi|307300703|ref|ZP_07580478.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307319113|ref|ZP_07598543.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|14523160|gb|AAK64754.1| CspA7 cold shock protein [Sinorhizobium meliloti 1021] gi|306895220|gb|EFN25976.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306904237|gb|EFN34822.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N DKG+GFITPE + G DVF+H SA+ G +L EG V+YD Q+ Sbjct: 1 MPKGTVKFFNDDKGFGFITPE---DGGTDVFVHVSALQHGG--SLKEGDKVSYDVGQDRK 55 Query: 62 NGKYSAENLKLV 73 GK AEN+ ++ Sbjct: 56 TGKSKAENVSVL 67 >gi|16765332|ref|NP_460947.1| cold-shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56413093|ref|YP_150168.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161613431|ref|YP_001587396.1| hypothetical protein SPAB_01147 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197362019|ref|YP_002141656.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205352312|ref|YP_002226113.1| cold shock protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856492|ref|YP_002243143.1| cold shock protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583507|ref|YP_002637305.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912431|ref|ZP_04656268.1| cold shock protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|325530013|sp|E1WGN1|CSPJ_SALTS RecName: Full=Cold shock-like protein CspJ gi|325530014|sp|P0CL01|CSPJ_SALTY RecName: Full=Cold shock-like protein CspJ gi|2961317|emb|CAA72682.1| cspB [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420530|gb|AAL20906.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127350|gb|AAV76856.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161362795|gb|ABX66563.1| hypothetical protein SPAB_01147 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197093496|emb|CAR58956.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205272093|emb|CAR36945.1| cold shock protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708295|emb|CAR32598.1| cold shock protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468034|gb|ACN45864.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247161|emb|CBG24984.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993987|gb|ACY88872.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158509|emb|CBW18019.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912986|dbj|BAJ36960.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085386|emb|CBY95167.1| Cold shock-like protein cspG CPS-G [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224641|gb|EFX49704.1| Cold shock protein CspG [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616988|gb|EFY13896.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618228|gb|EFY15120.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625898|gb|EFY22717.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626350|gb|EFY23160.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632765|gb|EFY29510.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639107|gb|EFY35800.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640379|gb|EFY37036.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647216|gb|EFY43715.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648415|gb|EFY44868.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655544|gb|EFY51852.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660322|gb|EFY56560.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663003|gb|EFY59210.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668188|gb|EFY64347.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674053|gb|EFY70147.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675595|gb|EFY71669.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682994|gb|EFY79010.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686688|gb|EFY82666.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130275|gb|ADX17705.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195075|gb|EFZ80259.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197875|gb|EFZ83000.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204480|gb|EFZ89486.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207570|gb|EFZ92518.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210991|gb|EFZ95851.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217555|gb|EGA02274.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222458|gb|EGA06829.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227477|gb|EGA11639.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231577|gb|EGA15690.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236020|gb|EGA20099.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240590|gb|EGA24633.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245482|gb|EGA29482.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247600|gb|EGA31551.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254428|gb|EGA38244.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257760|gb|EGA41440.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262133|gb|EGA45696.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266256|gb|EGA49746.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270733|gb|EGA54172.1| cold shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622839|gb|EGE29184.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627359|gb|EGE33702.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988884|gb|AEF07867.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 70 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+NP+KG+GFITP + DVF+H SA+ S L E Q V + Q G Sbjct: 6 TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQG-PKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVVAL 70 >gi|295698317|ref|YP_003602972.1| hypothetical protein RIEPE_0091 [Candidatus Riesia pediculicola USDA] gi|291157076|gb|ADD79521.1| conserved domain protein [Candidatus Riesia pediculicola USDA] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GS+KW+N KG+GFI+PE + DVF+H +++ S G LTEGQ V +D N G Sbjct: 5 KGSVKWFNEAKGFGFISPE---DGSKDVFVHFTSIQSEGFKTLTEGQKVEFDVA-NGEKG 60 Query: 64 KYSAENLKL 72 + + + Sbjct: 61 PSAINVVAI 69 >gi|291246380|ref|YP_003505766.1| putative cold-shock protein C [Staphylococcus simulans bv. staphylolyticus] gi|290463911|gb|ADD24898.1| putative cold-shock protein C [Staphylococcus simulans bv. staphylolyticus] Length = 66 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E +G+DVF+H S +A G +L EGQ V +D + D Sbjct: 1 MNNGTVKWFNSEKGFGFIERE----NGNDVFVHFSGIAGEGYKSLEEGQNVDFDIIDGD- 55 Query: 62 NGKYSAENL 70 G + + Sbjct: 56 RGPQATNVV 64 >gi|311694945|gb|ADP97818.1| cold shock, CspA [marine bacterium HP15] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI + G DVF+H SA+ ++G LTEGQ V + Q Sbjct: 5 KTGHVKWFNESKGFGFIAQD----GGSDVFVHYSAINASGFRTLTEGQQVQFTVTQGPKG 60 Query: 63 GKYSAENLKLV 73 AEN+ V Sbjct: 61 --PQAENVTPV 69 >gi|269468409|gb|EEZ80074.1| cold shock protein [uncultured SUP05 cluster bacterium] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW++ KG+GFI E SGDDVF+H A+ G +L EGQ V +D ++ Sbjct: 1 MSTTGKVKWFDAKKGFGFIEQE----SGDDVFVHFRAIQGDGYKSLEEGQEVVFDL-EDG 55 Query: 61 ANGKYSAEN 69 A G +A Sbjct: 56 AKGPQAANV 64 >gi|254000444|ref|YP_003052507.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. SIP3-4] gi|313202403|ref|YP_004041061.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. MP688] gi|253987123|gb|ACT51980.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4] gi|312441719|gb|ADQ85825.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ + G D+F H SA+A G +L + V+++ + + Sbjct: 1 MATGIVKWFNDSKGFGFITPD---DGGSDLFAHYSAIADTGYKSLKDNDRVSFEVI-DGP 56 Query: 62 NGKYSAENLK 71 GK A N++ Sbjct: 57 KGKQ-ASNIQ 65 >gi|153876303|ref|ZP_02003697.1| Cold shock protein [Beggiatoa sp. PS] gi|152067232|gb|EDN66302.1| Cold shock protein [Beggiatoa sp. PS] Length = 71 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E G DVF+H +++ + G +L EGQ VT + Q Sbjct: 7 TGTVKWFNDSKGFGFIEQEA---GGPDVFVHHTSIQADGFKSLQEGQKVTMEVTQGQKG- 62 Query: 64 KYSAENL 70 AEN+ Sbjct: 63 -LQAENV 68 >gi|146308090|ref|YP_001188555.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina ymp] gi|145576291|gb|ABP85823.1| cold-shock DNA-binding protein family [Pseudomonas mendocina ymp] Length = 69 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFI E SG DVF+H A+ G L EGQ V + Q Sbjct: 4 RETGTVKWFNDSKGYGFIQRE----SGPDVFVHYRAIRGEGHRTLIEGQKVEFGVTQGQK 59 Query: 62 NGKYSAENLKLV 73 AE++ + Sbjct: 60 G--LQAEDVSAL 69 >gi|94971545|ref|YP_593593.1| cold-shock DNA-binding protein family protein [Candidatus Koribacter versatilis Ellin345] gi|94553595|gb|ABF43519.1| cold-shock DNA-binding protein family [Candidatus Koribacter versatilis Ellin345] Length = 66 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFI+ ++G+DVF+H SA+ S G +L EGQ VT+ V+ Sbjct: 1 MEQGTVKWFNDAKGYGFIS----RQNGEDVFVHFSAIESKGFRSLQEGQAVTFSVVKGPK 56 Query: 62 NGKYSAENLKLV 73 + AE + + Sbjct: 57 G--WQAEKVSAL 66 >gi|115350919|ref|YP_772758.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria AMMD] gi|170698521|ref|ZP_02889592.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171315542|ref|ZP_02904778.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|172059932|ref|YP_001807584.1| cold-shock DNA-binding domain-containing protein [Burkholderia ambifaria MC40-6] gi|115280907|gb|ABI86424.1| cold-shock DNA-binding protein family [Burkholderia ambifaria AMMD] gi|170136605|gb|EDT04862.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria IOP40-10] gi|171099379|gb|EDT44117.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MEX-5] gi|171992449|gb|ACB63368.1| cold-shock DNA-binding domain protein [Burkholderia ambifaria MC40-6] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V+++ V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMDGFKTLKENQRVSFE-VKLGP 56 Query: 62 NGKYSAENLKLV 73 GK +A N++ V Sbjct: 57 KGKQAA-NIQAV 67 >gi|330445023|ref|ZP_08308677.1| transcription antiterminator and regulator of RNA stability [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493141|dbj|GAA03174.1| transcription antiterminator and regulator of RNA stability [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 68 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFI+ G DVF+H SA+ + G L EGQ V + V + G Sbjct: 5 TGTVKWFNDDKGFGFIS----GADGKDVFVHFSAIQAQGRRTLREGQSVEF-IVTDGQKG 59 Query: 64 KYSAENLKL 72 ++E + L Sbjct: 60 PQASEVVAL 68 >gi|311031676|ref|ZP_07709766.1| cold shock protein [Bacillus sp. m3-13] Length = 65 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI +G DDVF+H SA+ G +L EGQ VT++ Q Sbjct: 1 MLEGKVKWFNAEKGFGFIEVDGQ----DDVFVHFSAIQGEGFKSLEEGQTVTFEIEQGAR 56 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 57 G--PQATNVQ 64 >gi|301059113|ref|ZP_07200063.1| cold shock protein CspB [delta proteobacterium NaphS2] gi|300446786|gb|EFK10601.1| cold shock protein CspB [delta proteobacterium NaphS2] Length = 66 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ KGYGFI E G DVF+H S + G L EG V+++ + Sbjct: 1 MAEGTVKWFDEKKGYGFIEQE----DGPDVFVHFSGINGTGFKTLNEGARVSFEVEEGQR 56 Query: 62 NGKYSAENLKLV 73 +A N+ ++ Sbjct: 57 G--PAAANVTVI 66 >gi|292670014|ref|ZP_06603440.1| cold shock protein [Selenomonas noxia ATCC 43541] gi|292648315|gb|EFF66287.1| cold shock protein [Selenomonas noxia ATCC 43541] Length = 66 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ DKGYGFI+ E GDDVF+H S++ G L+EGQ V +D V+ A G Sbjct: 2 TGKVKWFSADKGYGFISRE----DGDDVFVHFSSIQGEGYKTLSEGQEVEFDIVEG-ARG 56 Query: 64 KYSAENLK 71 + +K Sbjct: 57 PQADNVIK 64 >gi|33592837|ref|NP_880481.1| cold shock-like protein [Bordetella pertussis Tohama I] gi|61221519|sp|P0A352|CSPA_BORPE RecName: Full=Cold shock-like protein CspA gi|61221520|sp|P0A353|CSPA_BORBR RecName: Full=Cold shock-like protein CspA gi|61221521|sp|P0A354|CSPA_BORPA RecName: Full=Cold shock-like protein CspA gi|4468119|emb|CAB38009.1| CspA protein; cold shock protein A [Bordetella pertussis Tohama I] gi|33572485|emb|CAE42057.1| cold shock-like protein [Bordetella pertussis Tohama I] gi|332382250|gb|AEE67097.1| cold shock-like protein [Bordetella pertussis CS] Length = 67 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFITPE G D+F H S + + G +L E Q V++ Sbjct: 1 METGVVKWFNAEKGYGFITPEA---GGKDLFAHFSEIQANGFKSLEENQRVSF-VTAMGP 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPQA 61 >gi|89075964|ref|ZP_01162336.1| cold shock protein [Photobacterium sp. SKA34] gi|90581356|ref|ZP_01237152.1| cold shock protein [Vibrio angustum S14] gi|89048313|gb|EAR53892.1| cold shock protein [Photobacterium sp. SKA34] gi|90437466|gb|EAS62661.1| cold shock protein [Vibrio angustum S14] Length = 68 Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFI+ G DVF+H SA+ + G L EGQ V + V + G Sbjct: 5 TGTVKWFNDDKGFGFIS----GTDGKDVFVHFSAIQAQGRRTLREGQSVEF-IVTDGQKG 59 Query: 64 KYSAENLKL 72 ++E + L Sbjct: 60 PQASEVIAL 68 >gi|320333865|ref|YP_004170576.1| cold-shock DNA-binding domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319755154|gb|ADV66911.1| cold-shock DNA-binding domain protein [Deinococcus maricopensis DSM 21211] Length = 86 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI DVF H SA+ G L EG V +D + Sbjct: 1 MAVGKVKWFNAEKGFGFIE----VAGSPDVFAHFSAIKGTGFKKLNEGDEVEFDIEEGQR 56 Query: 62 NGKYSAENLKLVPKSSN 78 A N+ + + Sbjct: 57 GKGPQAANIVVTKAAPE 73 >gi|308270250|emb|CBX26862.1| Cold shock-like protein cspLA [uncultured Desulfobacterium sp.] Length = 66 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E +G DVF+H SA+ + G +L+EG VT++ Q Sbjct: 1 MINGTVKWFNDQKGFGFIEQE----NGPDVFVHHSAINATGFKSLSEGSHVTFEIEQGPK 56 Query: 62 NGKYSAENLKL 72 +A N+ L Sbjct: 57 G--PAASNVTL 65 >gi|194337522|ref|YP_002019316.1| cold-shock DNA-binding domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309999|gb|ACF44699.1| cold-shock DNA-binding domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 74 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 5/74 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KG+GFI P+ G DVF+H + + +GL L E V YD V+ Sbjct: 6 MADTGTVKWFNKMKGFGFIIPD---NGGADVFVHINELEKSGLATLNEADKVKYDMVE-- 60 Query: 61 ANGKYSAENLKLVP 74 NGK +A N++L+ Sbjct: 61 KNGKVAAGNIQLLK 74 >gi|42780307|ref|NP_977554.1| cold shock protein CspA [Bacillus cereus ATCC 10987] gi|228906859|ref|ZP_04070728.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|228957503|ref|ZP_04119255.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228984303|ref|ZP_04144484.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229042975|ref|ZP_04190706.1| Cold shock protein cspB [Bacillus cereus AH676] gi|229084220|ref|ZP_04216504.1| Cold shock protein cspB [Bacillus cereus Rock3-44] gi|229095719|ref|ZP_04226698.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|229101818|ref|ZP_04232533.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|229114669|ref|ZP_04244083.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|229143839|ref|ZP_04272258.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|229149436|ref|ZP_04277672.1| Cold shock protein cspB [Bacillus cereus m1550] gi|229160184|ref|ZP_04288183.1| Cold shock protein cspB [Bacillus cereus R309803] gi|229195434|ref|ZP_04322202.1| Cold shock protein cspB [Bacillus cereus m1293] gi|296501833|ref|YP_003663533.1| cold shock protein [Bacillus thuringiensis BMB171] gi|42736226|gb|AAS40162.1| cold shock protein CspA [Bacillus cereus ATCC 10987] gi|209972092|gb|ACJ03557.1| cold shock protein [Bacillus cereus] gi|209972100|gb|ACJ03561.1| cold shock protein [Bacillus thuringiensis serovar tohokuensis] gi|228587974|gb|EEK46024.1| Cold shock protein cspB [Bacillus cereus m1293] gi|228623145|gb|EEK79972.1| Cold shock protein cspB [Bacillus cereus R309803] gi|228634078|gb|EEK90671.1| Cold shock protein cspB [Bacillus cereus m1550] gi|228639600|gb|EEK96011.1| Cold shock protein cspB [Bacillus cereus BDRD-ST24] gi|228668734|gb|EEL24162.1| Cold shock protein cspB [Bacillus cereus Rock1-3] gi|228681611|gb|EEL35773.1| Cold shock protein cspB [Bacillus cereus Rock3-28] gi|228687552|gb|EEL41451.1| Cold shock protein cspB [Bacillus cereus Rock3-29] gi|228699098|gb|EEL51799.1| Cold shock protein cspB [Bacillus cereus Rock3-44] gi|228726315|gb|EEL77541.1| Cold shock protein cspB [Bacillus cereus AH676] gi|228775420|gb|EEM23805.1| Cold shock protein cspB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228802095|gb|EEM48960.1| Cold shock protein cspB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228852863|gb|EEM97648.1| Cold shock protein cspB [Bacillus thuringiensis IBL 200] gi|296322885|gb|ADH05813.1| cold shock protein [Bacillus thuringiensis BMB171] gi|324325246|gb|ADY20506.1| cold shock protein CspA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 67 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ + + Sbjct: 1 MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFEIEEGN 56 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 57 -RGPQAKNVIKL 67 >gi|328883511|emb|CCA56750.1| cold shock protein [Streptomyces venezuelae ATCC 10712] Length = 67 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 1 MANGTVKWFNAEKGFGFIEQDG---GGPDVFAHFSNIAAQGFRELQEGQKVSFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|319787350|ref|YP_004146825.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317465862|gb|ADV27594.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 69 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI+ E +G+DVF+H A+ G +L EGQ VT+ VQ Sbjct: 4 RETGTVKWFNDAKGFGFISRE----NGEDVFVHFRAIQMQGFKSLKEGQKVTFTVVQGQK 59 Query: 62 NGKYSAE 68 + A Sbjct: 60 GLQADAV 66 >gi|259505713|ref|ZP_05748615.1| cold shock protein [Corynebacterium efficiens YS-314] gi|259166686|gb|EEW51240.1| cold shock protein [Corynebacterium efficiens YS-314] Length = 67 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P ++ DVF+H S + G NL E Q V ++ + Sbjct: 1 MAQGTVKWFNAEKGFGFIAP---SDGSADVFVHYSEIQGNGFRNLEENQQVEFELGEGAK 57 Query: 62 NGKYSAENLKLV 73 A+ ++ + Sbjct: 58 G--PQAQQVRAL 67 >gi|166032459|ref|ZP_02235288.1| hypothetical protein DORFOR_02174 [Dorea formicigenerans ATCC 27755] gi|166026816|gb|EDR45573.1| hypothetical protein DORFOR_02174 [Dorea formicigenerans ATCC 27755] Length = 65 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI S ESG+DVF+H S + G +L EGQ V +D + A G Sbjct: 2 KGTVKWFNNQKGYGFI----SDESGNDVFVHYSGLNMEGFKSLEEGQEVEFDVTEG-AKG 56 Query: 64 KYSAENLKL 72 + KL Sbjct: 57 PQAVNVTKL 65 >gi|117620914|ref|YP_857368.1| hypothetical protein AHA_2864 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|145298472|ref|YP_001141313.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida A449] gi|117562321|gb|ABK39269.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|142851244|gb|ABO89565.1| cold shock protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 69 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI E +G DVF+H SA++ G L EGQ V + Q Sbjct: 4 MITGTVKFFNETKGFGFIQQE----NGPDVFVHFSAISGNGFRTLAEGQRVQFSVTQGQK 59 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 60 G--PQAENVTAL 69 >gi|330504261|ref|YP_004381130.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] gi|328918547|gb|AEB59378.1| cold-shock DNA-binding protein family protein [Pseudomonas mendocina NK-01] Length = 69 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFI E SG DVF+H A+ G L EGQ V + Q Sbjct: 4 RETGTVKWFNDSKGYGFIQRE----SGPDVFVHYRAIRGEGHRTLVEGQKVEFGVTQGQK 59 Query: 62 NGKYSAENLKLV 73 AE++ + Sbjct: 60 G--LQAEDVSAL 69 >gi|238756793|ref|ZP_04618027.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473] gi|238704988|gb|EEP97471.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473] Length = 75 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP T+ DVF+H SA+ S L EGQ V + +N A G Sbjct: 11 TGLVKWFDAGKGFGFITP---TDGSKDVFVHFSAIQSNDFKTLDEGQSVEFSI-ENGAKG 66 Query: 64 KYSAENLKL 72 +A + + Sbjct: 67 PSAANVVAV 75 >gi|91793637|ref|YP_563288.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217] gi|91715639|gb|ABE55565.1| cold-shock DNA-binding protein family [Shewanella denitrificans OS217] Length = 69 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V++ Q Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ +V Sbjct: 60 -PQAENVSVV 68 >gi|297538451|ref|YP_003674220.1| cold-shock DNA-binding domain-containing protein [Methylotenera sp. 301] gi|297257798|gb|ADI29643.1| cold-shock DNA-binding domain protein [Methylotenera sp. 301] Length = 67 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ GDD+F H SA+ +G +L E V++D + Sbjct: 1 MATGLVKWFNDSKGFGFITPDA---GGDDLFAHFSAIVDSGYKSLKENDRVSFDVT-DGP 56 Query: 62 NGKYSAENLK 71 GK A N++ Sbjct: 57 KGKQ-ASNIQ 65 >gi|229028904|ref|ZP_04185005.1| Cold shock protein cspB [Bacillus cereus AH1271] gi|229171874|ref|ZP_04299443.1| Cold shock protein cspB [Bacillus cereus MM3] gi|210077339|gb|ACJ06956.1| cold shock protein [Bacillus thuringiensis serovar azorensis] gi|228611584|gb|EEK68837.1| Cold shock protein cspB [Bacillus cereus MM3] gi|228732475|gb|EEL83356.1| Cold shock protein cspB [Bacillus cereus AH1271] Length = 67 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ ++ Sbjct: 1 MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFEI-EDG 55 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 56 NRGPQAKNVIKL 67 >gi|119503460|ref|ZP_01625543.1| Cold shock protein [marine gamma proteobacterium HTCC2080] gi|119460522|gb|EAW41614.1| Cold shock protein [marine gamma proteobacterium HTCC2080] Length = 68 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFI E G DVF+H SA+ G LT+GQ V + Sbjct: 5 TGTVKWFNETKGYGFIEQE----GGPDVFVHFSAIQGDGFKTLTDGQKVQFTVATGQKG- 59 Query: 64 KYSAENL 70 AEN+ Sbjct: 60 -PQAENV 65 >gi|90422418|ref|YP_530788.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90104432|gb|ABD86469.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB18] Length = 70 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +L EGQ ++++ + Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLIEGQRISFEVEPDK 57 Query: 61 ANGKYSAENLKL 72 A NL L Sbjct: 58 KGKGPKAVNLVL 69 >gi|239628310|ref|ZP_04671341.1| cold-shock DNA-binding domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239518456|gb|EEQ58322.1| cold-shock DNA-binding domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KG+GFIT E E+G+D+F+H S +AS G +L +GQ VT+D + Sbjct: 1 MNKGTVKWFNSQKGFGFITNE---ENGEDIFVHFSGIASNGFKSLEDGQSVTFDITNGNR 57 Query: 62 NGKYSAENL 70 A N+ Sbjct: 58 G--LQAVNV 64 >gi|161502877|ref|YP_001569989.1| hypothetical protein SARI_00934 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864224|gb|ABX20847.1| hypothetical protein SARI_00934 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 70 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+NP+KG+GFITP + DVF+H SA+ S L E Q V + Q G Sbjct: 6 TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFRTLNENQEVEFSVEQG-PKG 61 Query: 64 KYSAENLKL 72 + + + L Sbjct: 62 PSAVDVVAL 70 >gi|163802086|ref|ZP_02195982.1| cold shock-like protein CspD [Vibrio sp. AND4] gi|159174227|gb|EDP59035.1| cold shock-like protein CspD [Vibrio sp. AND4] Length = 72 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + E D+F H S + G L GQ V+Y+ + Sbjct: 1 MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYEI-EKGP 56 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 57 KGSHASSVVPI 67 >gi|294011151|ref|YP_003544611.1| cold shock protein CspA [Sphingobium japonicum UT26S] gi|292674481|dbj|BAI95999.1| cold shock protein CspA [Sphingobium japonicum UT26S] Length = 70 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKGYGFI P+ + D F+H SAV GL L E V+YD Q D Sbjct: 1 MSIIGTVKFFNADKGYGFIAPD---DGSPDAFVHISAVERGGLATLREKDRVSYDLEQ-D 56 Query: 61 ANGKYSAENLK 71 GK +A N++ Sbjct: 57 KRGKMAAVNIQ 67 >gi|270055541|gb|ACZ59034.1| cold-shock protein C [Staphylococcus aureus] Length = 66 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFI + + DVF+H S +A G +L EGQ V +D V+ Sbjct: 1 MNNGTVKWFNADKGFGFIERDNDS----DVFVHYSGIAGEGYKSLEEGQNVDFDIVEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--EQATNVVAI 66 >gi|254386942|ref|ZP_05002225.1| cold-shock domain containing protein [Streptomyces sp. Mg1] gi|194345770|gb|EDX26736.1| cold-shock domain containing protein [Streptomyces sp. Mg1] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ VT+D Q Sbjct: 1 MAAGTVKWFNAEKGFGFIEQEG---GGPDVFAHYSNIAAQGFRELLEGQKVTFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|222053850|ref|YP_002536212.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] gi|221563139|gb|ACM19111.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI+ + G+DVF+H SA++ G L EG VT+D V+ Sbjct: 1 MEKGIVKWFNESKGFGFISRDT----GEDVFVHFSAISGEGFKTLNEGDAVTFDVVKG-P 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 KGPQAANV 63 >gi|254282468|ref|ZP_04957436.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR51-B] gi|219678671|gb|EED35020.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR51-B] Length = 68 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFI E G DVF+H SA+ G L++GQ V + Sbjct: 6 GTVKWFNETKGYGFIEQE----GGPDVFVHFSAIQGDGFKTLSDGQKVEFTVANGQKG-- 59 Query: 65 YSAENL 70 AEN+ Sbjct: 60 PQAENV 65 >gi|253698845|ref|YP_003020034.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] gi|251773695|gb|ACT16276.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] Length = 66 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI E +G+DVF+H SA+ G +L EG VT+D VQ Sbjct: 1 MAKGVVKWFNDSKGFGFIEQE----NGEDVFVHFSAIQGEGFKSLAEGDSVTFD-VQQGP 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGLQAANVTRV 66 >gi|118602909|ref|YP_904124.1| cold-shock DNA-binding protein family protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567848|gb|ABL02653.1| cold-shock DNA-binding protein family [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW++ KG+GFI E +GDDVF+H A+ G +L EGQ V +D Q + Sbjct: 1 MSTTGKVKWFDAKKGFGFIEQE----NGDDVFVHFRAIQGDGYKSLEEGQEVEFDLEQGE 56 Query: 61 ANGK 64 + Sbjct: 57 KGPQ 60 >gi|52840671|ref|YP_094470.1| cold shock protein CspD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54296462|ref|YP_122831.1| hypothetical protein lpp0493 [Legionella pneumophila str. Paris] gi|296105977|ref|YP_003617677.1| cold shock protein CspD [Legionella pneumophila 2300/99 Alcoy] gi|52627782|gb|AAU26523.1| cold shock protein CspD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53750247|emb|CAH11641.1| hypothetical protein lpp0493 [Legionella pneumophila str. Paris] gi|295647878|gb|ADG23725.1| cold shock protein CspD [Legionella pneumophila 2300/99 Alcoy] gi|307609235|emb|CBW98700.1| hypothetical protein LPW_05081 [Legionella pneumophila 130b] Length = 77 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N KG+GFI PEG G+D+F+H S++ G L GQ VTYD V N Sbjct: 1 MARGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLVPGQAVTYDVV-NGE 56 Query: 62 NGKYSAENLKLVPKSSN 78 G +++ + L + Sbjct: 57 RGLHASNVVALSENAEQ 73 >gi|270159041|ref|ZP_06187697.1| cold shock protein [Legionella longbeachae D-4968] gi|289166123|ref|YP_003456261.1| Cold shock-like protein CspD [Legionella longbeachae NSW150] gi|269987380|gb|EEZ93635.1| cold shock protein [Legionella longbeachae D-4968] gi|288859296|emb|CBJ13230.1| putative Cold shock-like protein CspD [Legionella longbeachae NSW150] Length = 76 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N KG+GFI PE GDD+F+H S++ G L GQ+V YD Q D Sbjct: 1 MARGEVKWFNNAKGWGFIIPE---NEGDDIFVHFSSIHGTGYKTLAPGQIVNYDVEQGD- 56 Query: 62 NGKYSAENLKL 72 G ++A + L Sbjct: 57 KGLHAANVIVL 67 >gi|302535426|ref|ZP_07287768.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302444321|gb|EFL16137.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI +G GDDVF H S +A+ G L EGQ VT+D Q Sbjct: 1 MASGTVKWFNAAKGFGFIEQDG---GGDDVFAHFSNIATQGFRELLEGQKVTFDIAQGQK 57 Query: 62 NGKYSAENLKLV 73 +AEN+ V Sbjct: 58 G--PTAENIVPV 67 >gi|291550100|emb|CBL26362.1| cold-shock DNA-binding protein family [Ruminococcus torques L2-14] Length = 65 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFI+ G+D+F+H S + G +L EGQ V ++ + A G Sbjct: 2 TGTVKWFNNQKGYGFIS----DAEGNDIFVHYSGLVMDGFKSLEEGQAVEFEVTEG-AKG 56 Query: 64 KYSAENLKL 72 + +KL Sbjct: 57 PQAVNVVKL 65 >gi|71725891|gb|AAZ39064.1| cold shock protein [Exiguobacterium sibiricum] gi|71725893|gb|AAZ39065.1| cold shock protein [Exiguobacterium undae] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 5/65 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E SGDDVF+H SA+ + G +L EGQ V+++ V+ G Sbjct: 4 GIVKWFNAEKGFGFIERE----SGDDVFVHFSAIQTDGFKSLDEGQEVSFE-VEEGQRGP 58 Query: 65 YSAEN 69 +A Sbjct: 59 PAANV 63 >gi|317488560|ref|ZP_07947105.1| cold-shock' DNA-binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325832026|ref|ZP_08165123.1| cold shock protein CspB [Eggerthella sp. HGA1] gi|316912302|gb|EFV33866.1| cold-shock' DNA-binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486347|gb|EGC88799.1| cold shock protein CspB [Eggerthella sp. HGA1] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP+KGYGFI+ + G+D+F+H S + G L EG V +D Sbjct: 1 MAEGTVKWFNPEKGYGFISQ----KDGEDLFVHFSEIKMDGFKTLDEGAAVQFDVT-TGQ 55 Query: 62 NGKYSAENLK 71 NGK A N+ Sbjct: 56 NGKLQASNVT 65 >gi|104783408|ref|YP_609906.1| cold shock protein [Pseudomonas entomophila L48] gi|95112395|emb|CAK17122.1| cold shock protein [Pseudomonas entomophila L48] Length = 69 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQNGTVKWFNDEKGYGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59 Query: 62 N 62 Sbjct: 60 G 60 >gi|114705002|ref|ZP_01437910.1| cold shock protein [Fulvimarina pelagi HTCC2506] gi|114539787|gb|EAU42907.1| cold shock protein [Fulvimarina pelagi HTCC2506] Length = 70 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N +KG+GFI P+ G D+F+H SAV ++GL L E Q V+++ + Sbjct: 1 MAQTGTVKFFNTEKGFGFIKPD---NGGADIFVHISAVQASGLAGLEENQKVSFETEPDK 57 Query: 61 ANGKYSAENLK 71 A NL+ Sbjct: 58 RGKGPKAVNLE 68 >gi|163939029|ref|YP_001643913.1| cold-shock DNA-binding domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229010524|ref|ZP_04167726.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048] gi|229056860|ref|ZP_04196256.1| Cold shock-like protein cspB [Bacillus cereus AH603] gi|229132025|ref|ZP_04260888.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196] gi|229166069|ref|ZP_04293831.1| Cold shock-like protein cspB [Bacillus cereus AH621] gi|2493761|sp|Q45096|CSPA_BACCE RecName: Full=Major cold shock protein CspA gi|1405470|emb|CAA63607.1| CspA protein [Bacillus cereus] gi|163861226|gb|ABY42285.1| cold-shock DNA-binding domain protein [Bacillus weihenstephanensis KBAB4] gi|209972082|gb|ACJ03552.1| cold shock protein [Bacillus thuringiensis serovar bolivia] gi|209972084|gb|ACJ03553.1| cold shock protein [Bacillus weihenstephanensis] gi|209972102|gb|ACJ03562.1| cold shock protein [Bacillus thuringiensis serovar vazensis] gi|209972104|gb|ACJ03563.1| cold shock protein [Bacillus mycoides] gi|209972106|gb|ACJ03564.1| cold shock protein [Bacillus weihenstephanensis] gi|210077343|gb|ACJ06958.1| cold shock protein [Bacillus thuringiensis serovar navarrensis] gi|228617378|gb|EEK74441.1| Cold shock-like protein cspB [Bacillus cereus AH621] gi|228651425|gb|EEL07397.1| Cold shock-like protein cspB [Bacillus cereus BDRD-ST196] gi|228720388|gb|EEL71961.1| Cold shock-like protein cspB [Bacillus cereus AH603] gi|228750722|gb|EEM00546.1| Cold shock-like protein cspB [Bacillus mycoides DSM 2048] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ ++ Sbjct: 1 MTVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFEI-EDG 55 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 56 NRGPQAKNVIKL 67 >gi|89256660|ref|YP_514022.1| cold shock protein [Francisella tularensis subsp. holarctica LVS] gi|156502808|ref|YP_001428873.1| cold-shock DNA-binding domain-containing protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010528|ref|ZP_02275459.1| hypothetical protein Ftulh_07407 [Francisella tularensis subsp. holarctica FSC200] gi|254367972|ref|ZP_04983992.1| cold shock protein [Francisella tularensis subsp. holarctica 257] gi|290953400|ref|ZP_06558021.1| cold shock protein [Francisella tularensis subsp. holarctica URFT1] gi|295313361|ref|ZP_06803970.1| cold shock protein [Francisella tularensis subsp. holarctica URFT1] gi|89144491|emb|CAJ79800.1| cold shock protein [Francisella tularensis subsp. holarctica LVS] gi|134253782|gb|EBA52876.1| cold shock protein [Francisella tularensis subsp. holarctica 257] gi|156253411|gb|ABU61917.1| cold-shock DNA-binding domain protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFI P + G DVF+H SAV +AGL +L E + V+++ +N Sbjct: 1 MRQGTVKFFNTSKGFGFIEP---QDGGKDVFVHISAVENAGLSSLRESEKVSFEVEEN-- 55 Query: 62 NGKYSAENLK 71 GK +A N+K Sbjct: 56 RGKMAAVNIK 65 >gi|319400565|gb|EFV88795.1| cold shock protein cspD [Staphylococcus epidermidis FRI909] Length = 66 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFI + +G+DVF+H S +A G +L EGQ V +D V+ Sbjct: 1 MNNGTVKWFNVDKGFGFIERD----NGNDVFVHYSGIAGEGYKSLEEGQNVDFDIVEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 57 G--EQATNVVVM 66 >gi|225174262|ref|ZP_03728261.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] gi|225170047|gb|EEG78842.1| cold-shock DNA-binding domain protein [Dethiobacter alkaliphilus AHT 1] Length = 65 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI T G+DVF+H SA+ + G NL EGQ V++D V+ + G Sbjct: 2 TGKVKWFNSDKGFGFIE----TSEGNDVFVHFSAIQAEGFKNLEEGQDVSFDVVEGN-RG 56 Query: 64 KYSAENL 70 +A + Sbjct: 57 PQAANVV 63 >gi|209972096|gb|ACJ03559.1| cold shock protein [Bacillus weihenstephanensis] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ ++ Sbjct: 1 MTVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIENDGFKSLEEGQKVSFEI-EDG 55 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 56 NRGPQAKNVIKL 67 >gi|218778357|ref|YP_002429675.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759741|gb|ACL02207.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 66 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI E G DVF+H +A+ G L EG V++D Q Sbjct: 1 MANGTVKWFNDAKGYGFIEQE----EGGDVFVHYTAITGKGFRTLAEGDRVSFDVEQGQK 56 Query: 62 NGKYSAENL 70 +A N+ Sbjct: 57 G--PAATNV 63 >gi|86157700|ref|YP_464485.1| cold-shock DNA-binding protein family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|197122991|ref|YP_002134942.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|220917780|ref|YP_002493084.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|85774211|gb|ABC81048.1| cold-shock DNA-binding protein family [Anaeromyxobacter dehalogenans 2CP-C] gi|196172840|gb|ACG73813.1| cold-shock DNA-binding domain protein [Anaeromyxobacter sp. K] gi|219955634|gb|ACL66018.1| cold-shock DNA-binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+ +G G+DVF+H +A+ + G +L EGQ V ++ V+ Sbjct: 1 MASGTVKWFNDAKGFGFISQDG---GGEDVFVHHTAIVAEGFRSLQEGQRVEFE-VKKGP 56 Query: 62 NGKYSAEN 69 G +A Sbjct: 57 KGLQAANV 64 >gi|316932717|ref|YP_004107699.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315600431|gb|ADU42966.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 70 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +LTEGQ ++++ + Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57 Query: 61 ANGKYSAENLKL 72 A NL + Sbjct: 58 KGKGPKAVNLVV 69 >gi|209972088|gb|ACJ03555.1| cold shock protein [Bacillus thuringiensis serovar finitimus] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ + + Sbjct: 1 MAVTGQVKWFNSEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFEIEEGN 56 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 57 -RGPQAKNVIKL 67 >gi|148652145|ref|YP_001279238.1| cold-shock DNA-binding domain-containing protein [Psychrobacter sp. PRwf-1] gi|148653967|ref|YP_001281060.1| cold-shock DNA-binding domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571229|gb|ABQ93288.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1] gi|148573051|gb|ABQ95110.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1] Length = 69 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI PE G DVF H S +AS+G L EGQ V + Q A G Sbjct: 6 KGTVKWFNEAKGFGFIAPET----GPDVFAHYSEIASSGFKTLAEGQEVEFTVTQG-AKG 60 Query: 64 KYS 66 + Sbjct: 61 PQA 63 >gi|109900083|ref|YP_663338.1| cold-shock DNA-binding domain-containing protein [Pseudoalteromonas atlantica T6c] gi|109702364|gb|ABG42284.1| cold-shock DNA-binding protein family [Pseudoalteromonas atlantica T6c] Length = 69 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 31/67 (46%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N DKG+GFI E SG DVF H SA+ S G L EGQ V + Q Sbjct: 6 TGSVKWFNEDKGFGFIEQE----SGPDVFAHFSAIVSEGFKTLAEGQRVEFTVTQGQKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -PQAENI 66 >gi|90408353|ref|ZP_01216516.1| cold shock DNA-binding domain protein [Psychromonas sp. CNPT3] gi|90310516|gb|EAS38638.1| cold shock DNA-binding domain protein [Psychromonas sp. CNPT3] Length = 69 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H SA+ S G L EGQ V + Q Sbjct: 6 TGTVKWFNESKGFGFIEQE----NGPDVFAHFSAIVSNGFKTLAEGQKVQFTVTQGQKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -PQAENI 66 >gi|292487397|ref|YP_003530269.1| cold shock-like protein CspG [Erwinia amylovora CFBP1430] gi|292898644|ref|YP_003538013.1| cold shock protein [Erwinia amylovora ATCC 49946] gi|291198492|emb|CBJ45600.1| cold shock protein [Erwinia amylovora ATCC 49946] gi|291552816|emb|CBA19861.1| Cold shock-like protein cspG (CPS-G) [Erwinia amylovora CFBP1430] gi|312171502|emb|CBX79760.1| Cold shock-like protein cspG (CPS-G) [Erwinia amylovora ATCC BAA-2158] Length = 70 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++PDKG+GFI+P T+ DVF+H SA+ + G L EGQ V + +N G Sbjct: 7 GLVKWFSPDKGFGFISP---TDGSKDVFVHFSAIQNGGFKTLEEGQKVEFTI-ENGQKGP 62 Query: 65 YSAENLKL 72 +A L Sbjct: 63 AAANVTAL 70 >gi|262165515|ref|ZP_06033252.1| cold shock protein CspA [Vibrio mimicus VM223] gi|262402390|ref|ZP_06078951.1| cold shock protein CspA [Vibrio sp. RC586] gi|262025231|gb|EEY43899.1| cold shock protein CspA [Vibrio mimicus VM223] gi|262351172|gb|EEZ00305.1| cold shock protein CspA [Vibrio sp. RC586] Length = 70 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ G D+F+H ++ S G L EGQ V ++ Q + Sbjct: 6 TGLVKWFNETKGFGFITPD---NGGADLFVHFKSIVSDGFKTLAEGQKVAFNVEQGNKG- 61 Query: 64 KYSAENLKLV 73 A N+ ++ Sbjct: 62 -PQAANVTVL 70 >gi|239832396|ref|ZP_04680725.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301] gi|239824663|gb|EEQ96231.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301] Length = 96 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N +KG+GFI P+ + G D+F+H SAV ++GL L + Q V+Y+ + Sbjct: 26 MAQTGQVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLTGLADNQKVSYETEPDR 82 Query: 61 ANGKYSAENLKL 72 A N+ + Sbjct: 83 RGKGPKAVNITV 94 >gi|299138194|ref|ZP_07031374.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX8] gi|322436378|ref|YP_004218590.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|298600124|gb|EFI56282.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX8] gi|321164105|gb|ADW69810.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 66 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI+ ++G+DVF+H SA+ S G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFIS----RQNGEDVFVHYSAINSNGFKSLQEGQAVQFNVVKGPK 56 Query: 62 NGKYSAENLKLV 73 + A +++ + Sbjct: 57 G--WQASDVQPL 66 >gi|300855130|ref|YP_003780114.1| cold-shock protein [Clostridium ljungdahlii DSM 13528] gi|300435245|gb|ADK15012.1| cold-shock protein [Clostridium ljungdahlii DSM 13528] Length = 65 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT E G DVF H S + S G +L EGQ V+YD V+ Sbjct: 2 NGTVKWFNGEKGFGFIT----GEDGKDVFAHFSQINSNGYKSLDEGQKVSYDVVEGPKG- 56 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 57 -LQAENITTI 65 >gi|254252966|ref|ZP_04946284.1| Cold-shock protein [Burkholderia dolosa AUO158] gi|124895575|gb|EAY69455.1| Cold-shock protein [Burkholderia dolosa AUO158] gi|325524697|gb|EGD02687.1| cold shock-like protein [Burkholderia sp. TJI49] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|71278580|ref|YP_269596.1| cold shock-like protein CspD [Colwellia psychrerythraea 34H] gi|71144320|gb|AAZ24793.1| cold shock-like protein CspD [Colwellia psychrerythraea 34H] Length = 72 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G+D+F H S + G L GQ V Y+ + Sbjct: 1 MAHGTVKWFNNAKGFGFIRPDS---GGEDIFAHYSTIEMDGYRTLKAGQDVDYEL-NDGP 56 Query: 62 NGKYSA 67 G ++A Sbjct: 57 KGHHAA 62 >gi|88800616|ref|ZP_01116177.1| cold-shock DNA-binding domain family protein [Reinekea sp. MED297] gi|88776671|gb|EAR07885.1| cold-shock DNA-binding domain family protein [Reinekea sp. MED297] Length = 68 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI ++G DVF H SA+ +G L EGQ V + Q Sbjct: 5 TGTVKWFNEAKGFGFIEQ----QNGPDVFAHFSAITGSGFKTLAEGQKVEFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 60 -PQAENIVAI 68 >gi|323140506|ref|ZP_08075434.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT 12067] gi|322415074|gb|EFY05865.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT 12067] Length = 68 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 8/74 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G++KW+N KGYGFI +G +VF+H SA+ S G L EGQ V+Y Sbjct: 1 MLSIGTVKWFNNTKGYGFIE----ARNGQEVFVHFSAIRSDGYRCLQEGQRVSYHL---- 52 Query: 61 ANGKYSAENLKLVP 74 + GK+ L + P Sbjct: 53 SRGKHGPMALNVSP 66 >gi|307331143|ref|ZP_07610270.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306883223|gb|EFN14282.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELQEGQKVNFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|120554651|ref|YP_959002.1| cold-shock DNA-binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120324500|gb|ABM18815.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei VT8] Length = 69 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI E G DVF+H SA+ + G L EGQ V + Q Sbjct: 5 KTGHVKWFNESKGFGFIAQE----GGSDVFVHYSAINANGFRTLAEGQQVQFTVTQGPKG 60 Query: 63 GKYSAENLKLV 73 AEN+ + Sbjct: 61 --PQAENVTPL 69 >gi|237807342|ref|YP_002891782.1| cold-shock DNA-binding domain-containing protein [Tolumonas auensis DSM 9187] gi|237499603|gb|ACQ92196.1| cold-shock DNA-binding domain protein [Tolumonas auensis DSM 9187] Length = 69 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF++ + G DVF+H SA+AS G L EGQ V++D + Sbjct: 5 NGSVKWFNETKGFGFLSQD---NGGKDVFVHFSAIASTGFKTLAEGQAVSFDIEEGQRG- 60 Query: 64 KYSAENLKL 72 SA N+ + Sbjct: 61 -PSAVNVTV 68 >gi|195970700|gb|ACG60738.1| putative cold shock protein [Streptomyces flavoviridis] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V++D Q Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVSFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|210617492|ref|ZP_03291595.1| hypothetical protein CLONEX_03817 [Clostridium nexile DSM 1787] gi|210149279|gb|EEA80288.1| hypothetical protein CLONEX_03817 [Clostridium nexile DSM 1787] Length = 68 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 5/73 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW++ KG+GFIT E S G D+F+H S +A G L EGQ V++D Q Sbjct: 1 MNTGTVKWFDSQKGFGFITNEQS---GKDIFVHFSGIALNGFKTLEEGQQVSFDTTQGPR 57 Query: 62 NGKYSAENLKLVP 74 A N+ + Sbjct: 58 G--EQAVNVNYIM 68 >gi|209886327|ref|YP_002290184.1| putative cold-shock' DNA-binding domain [Oligotropha carboxidovorans OM5] gi|209874523|gb|ACI94319.1| putative cold-shock' DNA-binding domain [Oligotropha carboxidovorans OM5] Length = 71 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL NL EGQ +T++ + Sbjct: 1 MAMTGTVKFFNAERGYGFIKPD---DGGRDVFVHITAVERAGLKNLVEGQQITFEVEPDK 57 Query: 61 ANGKYSAENLKL 72 A NL + Sbjct: 58 KGKGPKAVNLVV 69 >gi|88811641|ref|ZP_01126895.1| probable cold-shock protein [Nitrococcus mobilis Nb-231] gi|88791032|gb|EAR22145.1| probable cold-shock protein [Nitrococcus mobilis Nb-231] Length = 70 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KGYGFI+ E G DVF+H A+ G L EGQ V +D V+ G Sbjct: 7 GVVKWFDDSKGYGFISQEQ----GPDVFVHFRAIRGEGFRTLREGQRVEFDIVEG-PKGL 61 Query: 65 YSAENLKLV 73 +++ + ++ Sbjct: 62 QASDVVAML 70 >gi|291517937|emb|CBK73158.1| cold-shock DNA-binding protein family [Butyrivibrio fibrisolvens 16/4] Length = 67 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KGYGFI S E G DVF+H S + S G L EG V Y+ + A Sbjct: 1 MSKGTVKWFNNSKGYGFI----SDEEGKDVFVHFSGINSEGFKTLEEGATVEYEVT-DGA 55 Query: 62 NGKYSAENLKLV 73 G A N+ +V Sbjct: 56 KGPQ-AVNVTVV 66 >gi|269102226|ref|ZP_06154923.1| cold shock protein CspD [Photobacterium damselae subsp. damselae CIP 102761] gi|268162124|gb|EEZ40620.1| cold shock protein CspD [Photobacterium damselae subsp. damselae CIP 102761] Length = 73 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PE + D+F H S + G L GQ V Y+ VQ Sbjct: 1 MAIGTVKWFNNAKGFGFICPE---DGDGDIFAHYSTIQMDGYRTLKAGQQVNYE-VQTGP 56 Query: 62 NGKYSAENLKLVPKSSN 78 G ++ E + P SN Sbjct: 57 KGFHARE---ITPIESN 70 >gi|253700127|ref|YP_003021316.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] gi|251774977|gb|ACT17558.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] Length = 68 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI + +G+DVF+H SA+ G +L EG+ V++D N Sbjct: 1 MAQGKVKWFNDAKGFGFIEQD----NGEDVFVHFSAITGDGFKSLAEGESVSFDVT-NGP 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 KGLQAANVKKI 66 >gi|90023400|ref|YP_529227.1| cold-shock DNA-binding protein family protein [Saccharophagus degradans 2-40] gi|89953000|gb|ABD83015.1| cold-shock DNA-binding protein family [Saccharophagus degradans 2-40] Length = 69 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI +SG DVF H SA+AS+G L EGQ V + Q Sbjct: 6 TGTVKWFNESKGFGFIEQ----KSGPDVFAHFSAIASSGFKTLAEGQQVEFTVTQGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 61 -PQAENIVAI 69 >gi|256822193|ref|YP_003146156.1| cold-shock DNA-binding domain-containing protein [Kangiella koreensis DSM 16069] gi|256795732|gb|ACV26388.1| cold-shock DNA-binding domain protein [Kangiella koreensis DSM 16069] Length = 69 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E +G DVF H SA+AS+G L EGQ V + Sbjct: 6 KGTVKWFNEAKGFGFIEQE----NGPDVFAHFSAIASSGFKTLAEGQQVEFTLTDGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 61 -PQAENITAL 69 >gi|126664621|ref|ZP_01735605.1| cold-shock DNA-binding domain family protein [Marinobacter sp. ELB17] gi|126630947|gb|EBA01561.1| cold-shock DNA-binding domain family protein [Marinobacter sp. ELB17] Length = 68 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT E G DVF+H SA+ G L EGQ V + Q Sbjct: 5 TGTVKFFNEAKGFGFITRE----GGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 60 -PQAENVVPL 68 >gi|77362297|ref|YP_341871.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125] gi|76877208|emb|CAI89425.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125] Length = 68 Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI E SG DVF H SA+ S G L EGQ V + Q Sbjct: 5 TGSVKWFNEAKGFGFIEQE----SGPDVFAHFSAITSDGFKTLAEGQRVQFTVTQGQKG- 59 Query: 64 KYSAENL 70 AEN+ Sbjct: 60 -PQAENI 65 >gi|326796216|ref|YP_004314036.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] gi|326546980|gb|ADZ92200.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] Length = 70 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E G DVF+H A+ G +L EGQ VT++ Q Sbjct: 8 GIVKWFNDEKGFGFIERE----GGPDVFVHFRAINGTGRRSLQEGQKVTFEVTQGQKG-- 61 Query: 65 YSAENLKLV 73 AEN+ +V Sbjct: 62 PQAENVTVV 70 >gi|331007546|ref|ZP_08330704.1| Cold shock protein CspC [gamma proteobacterium IMCC1989] gi|330418644|gb|EGG93152.1| Cold shock protein CspC [gamma proteobacterium IMCC1989] Length = 78 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +GYGFI+ E +E D+F+H + S G +L EGQ V + + D Sbjct: 12 RNTGTVKWFNNSRGYGFISCEAKSE---DIFVHYRNIQSEGYRSLNEGQSVEFSLAEGD- 67 Query: 62 NGKYSAENL 70 G + E + Sbjct: 68 KGLQAEEVV 76 >gi|320155835|ref|YP_004188214.1| cold shock protein CspD [Vibrio vulnificus MO6-24/O] gi|319931147|gb|ADV86011.1| cold shock protein CspD [Vibrio vulnificus MO6-24/O] Length = 73 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + D+F H S + G L GQ VTY+ + Sbjct: 1 MATGTVKWFNNAKGFGFICSDQEE---GDIFAHYSTIQMDGYRTLKAGQQVTYEI-EKGP 56 Query: 62 NGKYSAENLKLVPKSSN 78 G +++ + L +++ Sbjct: 57 KGCHASSVVPLEVQATK 73 >gi|258622545|ref|ZP_05717567.1| cold shock domain family protein [Vibrio mimicus VM573] gi|258625538|ref|ZP_05720427.1| cold shock domain family protein [Vibrio mimicus VM603] gi|262164476|ref|ZP_06032214.1| cold shock protein CspA [Vibrio mimicus VM223] gi|262173410|ref|ZP_06041087.1| cold shock protein CspA [Vibrio mimicus MB-451] gi|262403011|ref|ZP_06079571.1| cold shock protein CspA [Vibrio sp. RC586] gi|258582182|gb|EEW07042.1| cold shock domain family protein [Vibrio mimicus VM603] gi|258585245|gb|EEW09972.1| cold shock domain family protein [Vibrio mimicus VM573] gi|261890768|gb|EEY36755.1| cold shock protein CspA [Vibrio mimicus MB-451] gi|262026856|gb|EEY45523.1| cold shock protein CspA [Vibrio mimicus VM223] gi|262350510|gb|EEY99643.1| cold shock protein CspA [Vibrio sp. RC586] Length = 70 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF+T + G+DVF+H +++ S G LTEGQ V++ Q G Sbjct: 6 TGSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLTEGQRVSFTVEQG-KKG 61 Query: 64 KYSAENLKL 72 ++ + L Sbjct: 62 PQASNVVTL 70 >gi|149378085|ref|ZP_01895807.1| cold shock protein [Marinobacter algicola DG893] gi|149357654|gb|EDM46154.1| cold shock protein [Marinobacter algicola DG893] Length = 66 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI + G DVF+H SA+ ++G LTEGQ V + Q Sbjct: 2 KTGHVKWFNESKGFGFIAQD----GGSDVFVHYSAINASGFRTLTEGQQVQFTVTQGPKG 57 Query: 63 GKYSAENLKLV 73 AEN+ V Sbjct: 58 --PQAENVTPV 66 >gi|121997901|ref|YP_001002688.1| cold-shock DNA-binding domain-containing protein [Halorhodospira halophila SL1] gi|121589306|gb|ABM61886.1| cold-shock DNA-binding protein family [Halorhodospira halophila SL1] Length = 69 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G++KW++ KGYGFI+ E G+DVF+H A+ G +L EGQ V + ++ Sbjct: 4 RQQGTVKWFDNAKGYGFISRE----GGEDVFVHFRAIRGDGFRSLDEGQAVEFSVTRSPK 59 Query: 62 NGKYSAENLKLV 73 AE++ V Sbjct: 60 G--LQAEDVAAV 69 >gi|325963821|ref|YP_004241727.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] gi|323469908|gb|ADX73593.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] Length = 67 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFITP+ S DVF+H S + + G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFITPDDSD---GDVFVHYSEIQTGGFKTLDENQRVQFEIGQGAK 57 Query: 62 NGKYSAENLKLV 73 A + +V Sbjct: 58 G--PQATGVTVV 67 >gi|104774747|ref|YP_619727.1| cold shock protein A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514883|ref|YP_813789.1| cold shock protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|313124689|ref|YP_004034948.1| cold shock-like protein, cspa family [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|21633215|gb|AAM52983.1| CspA protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423828|emb|CAI98855.1| Cold shock protein A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094198|gb|ABJ59351.1| cold-shock DNA-binding protein family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|312281252|gb|ADQ61971.1| cold shock-like protein, CspA family [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325126587|gb|ADY85917.1| cold shock protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] gi|325685001|gb|EGD27141.1| cold shock protein CspA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 65 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKG+GFIT DVF+H S++ + G +L EGQ V+YD Q + Sbjct: 1 MQNGTVKWFNADKGFGFITGSDG-----DVFVHFSSIKTNGFKSLEEGQKVSYDVEQGN- 54 Query: 62 NGKYSAENL 70 G + + Sbjct: 55 RGPQATNVV 63 >gi|315123024|ref|YP_004065030.1| cold shock protein [Pseudoalteromonas sp. SM9913] gi|315016784|gb|ADT70121.1| cold shock protein [Pseudoalteromonas sp. SM9913] Length = 69 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E +G DVF H SA+ S G L EGQ V + Q Sbjct: 7 GTVKWFNESKGFGFIEQE----NGPDVFAHFSAIKSEGFKTLAEGQRVEFTLSQGQKG-- 60 Query: 65 YSAENLKLV 73 A+N+ + Sbjct: 61 PQADNITAL 69 >gi|294653627|gb|ADF28646.1| cold shock protein [Bacillus subtilis] Length = 68 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW+N +KG+GFI E G DVF+H SA+ G L EGQ V+++ V+ + G Sbjct: 7 KVKWFNSEKGFGFIEVE----GGSDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGN-RGPQ 61 Query: 66 SAENLK 71 +A K Sbjct: 62 AANVTK 67 >gi|148265731|ref|YP_001232437.1| cold-shock DNA-binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146399231|gb|ABQ27864.1| cold-shock DNA-binding protein family [Geobacter uraniireducens Rf4] Length = 66 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI + +G+DVF+H SA+ G +LTEG+ V++D N Sbjct: 1 MAQGKVKWFNDAKGFGFIEQD----NGEDVFVHFSAITGEGFKSLTEGEAVSFDVT-NGP 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 KGLQAANVKKI 66 >gi|307823664|ref|ZP_07653893.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307735649|gb|EFO06497.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 66 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E +G DVF+H + S+G +L EGQ V + Q Sbjct: 1 MTTGTVKWFNAEKGFGFIQQE----NGPDVFVHFRNINSSGFKSLDEGQKVQFTVTQGQK 56 Query: 62 NGKYSAENLKLV 73 AE + ++ Sbjct: 57 G--PQAEEVTII 66 >gi|229591581|ref|YP_002873700.1| major cold shock protein [Pseudomonas fluorescens SBW25] gi|229363447|emb|CAY50649.1| major cold shock protein [Pseudomonas fluorescens SBW25] Length = 70 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ + Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAEKGQ 59 Query: 62 NGKYSAEN 69 G +A+ Sbjct: 60 KGMQAAQV 67 >gi|302384852|ref|YP_003820674.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] gi|302195480|gb|ADL03051.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] Length = 67 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N KGYGFI + + G++VF+H S + + G L EGQ VTY+ + + Sbjct: 1 MNNGTVKWFNGAKGYGFIVNDAT---GEEVFVHFSGIVADGYKTLEEGQKVTYETTEGNR 57 Query: 62 NGKYSAENL 70 A N+ Sbjct: 58 G--LQAVNV 64 >gi|225873881|ref|YP_002755340.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] gi|225792075|gb|ACO32165.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] Length = 66 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI+ ++G+DVF+H SA++S G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFIS----RQNGEDVFVHYSAISSNGFRSLQEGQAVQFNVVKGPK 56 Query: 62 NGKYSAENLKLV 73 + A +++ + Sbjct: 57 G--WQAADVQPL 66 >gi|222149316|ref|YP_002550273.1| cold shock protein [Agrobacterium vitis S4] gi|221736300|gb|ACM37263.1| cold shock protein [Agrobacterium vitis S4] Length = 71 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N DKG+GFI P+ G D+F+H SAV ++GL L+E Q V++D + Sbjct: 1 MAETGIVKFFNNDKGFGFIKPD---NGGADIFVHISAVQASGLNGLSENQKVSFDTEPDR 57 Query: 61 ANGKYSAENLKL 72 A NL++ Sbjct: 58 RGKGPKAVNLQI 69 >gi|157375749|ref|YP_001474349.1| cold-shock DNA-binding domain-containing protein [Shewanella sediminis HAW-EB3] gi|157318123|gb|ABV37221.1| cold-shock DNA-binding domain protein [Shewanella sediminis HAW-EB3] Length = 68 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V + Q Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ +V Sbjct: 60 -PQAENVTIV 68 >gi|71066401|ref|YP_265128.1| cold-shock DNA-binding protein family protein [Psychrobacter arcticus 273-4] gi|93006957|ref|YP_581394.1| cold-shock DNA-binding domain-containing protein [Psychrobacter cryohalolentis K5] gi|71039386|gb|AAZ19694.1| cold-shock DNA-binding protein family [Psychrobacter arcticus 273-4] gi|92394635|gb|ABE75910.1| cold-shock DNA-binding protein family [Psychrobacter cryohalolentis K5] Length = 69 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW+N KG+GFI PE G DVF H S + +G L EGQ V + Q Sbjct: 5 QKGTVKWFNEAKGFGFIAPET----GADVFAHYSEITGSGFKTLAEGQEVEFTVTQGQKG 60 Query: 63 GKYSAENLKLV 73 A N+ + Sbjct: 61 --PQAHNIVAI 69 >gi|114049935|emb|CAK50952.1| putative cold shock protein [Streptomyces ambofaciens] gi|114050157|emb|CAK51190.1| putative cold shock protein [Streptomyces ambofaciens] Length = 67 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ VT+D Q Sbjct: 1 MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVTFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|107022084|ref|YP_620411.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia AU 1054] gi|116689028|ref|YP_834651.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia HI2424] gi|170732317|ref|YP_001764264.1| cold-shock DNA-binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|206561351|ref|YP_002232116.1| cold shock-like protein [Burkholderia cenocepacia J2315] gi|254246036|ref|ZP_04939357.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184] gi|105892273|gb|ABF75438.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia AU 1054] gi|116647117|gb|ABK07758.1| cold-shock DNA-binding protein family [Burkholderia cenocepacia HI2424] gi|124870812|gb|EAY62528.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184] gi|169815559|gb|ACA90142.1| cold-shock DNA-binding domain protein [Burkholderia cenocepacia MC0-3] gi|198037393|emb|CAR53328.1| cold shock-like protein [Burkholderia cenocepacia J2315] Length = 67 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMDGFKTLKENQRVSFD-VKVGP 56 Query: 62 NGKYSAENLKLV 73 GK +A N++ V Sbjct: 57 KGKQAA-NIQAV 67 >gi|149908417|ref|ZP_01897080.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] gi|149808580|gb|EDM68515.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] Length = 68 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H SA+ S G L E Q V ++ Sbjct: 5 TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAIESDGFRTLLENQKVEFNVTDGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 60 -PQAENIVVL 68 >gi|71725903|gb|AAZ39070.1| cold shock protein [Exiguobacterium acetylicum] Length = 67 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 5/65 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E SGDDVF+H SA+ S G +L EGQ V+++ V+ G Sbjct: 4 GKVKWFNSEKGFGFIERE----SGDDVFVHFSAIQSEGFKSLDEGQEVSFE-VEEGQRGP 58 Query: 65 YSAEN 69 +A Sbjct: 59 QAANV 63 >gi|88798702|ref|ZP_01114285.1| Cold shock protein [Reinekea sp. MED297] gi|88778465|gb|EAR09657.1| Cold shock protein [Reinekea sp. MED297] Length = 87 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI + E D+F H S++ G L GQ V ++ V+++ Sbjct: 1 MPVGKVKWFNNAKGFGFIVCDDHKE---DLFAHFSSIQMEGYKTLKAGQDVEFETVKSER 57 Query: 62 NGKYSAENLKLV 73 A N+++V Sbjct: 58 G--IHAVNIQVV 67 >gi|91975763|ref|YP_568422.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris BisB5] gi|91682219|gb|ABE38521.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB5] Length = 70 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +LTEGQ ++++ + Sbjct: 1 MSMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLTEGQRISFEVEPDK 57 Query: 61 ANGKYSAENLKL 72 A NL + Sbjct: 58 KGKGPKAVNLVI 69 >gi|240948086|ref|ZP_04752496.1| cold shock-like protein CspC [Actinobacillus minor NM305] gi|257465091|ref|ZP_05629462.1| cold shock-like protein CspC [Actinobacillus minor 202] gi|240297566|gb|EER48058.1| cold shock-like protein CspC [Actinobacillus minor NM305] gi|257450751|gb|EEV24794.1| cold shock-like protein CspC [Actinobacillus minor 202] Length = 70 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KG+GFI P+ + G+D+F+H SA+ S G L EG V ++ +D Sbjct: 5 TGTVKWFNATKGFGFIAPD---QGGEDIFVHFSAIESNGGYRTLEEGAKVEFEVQASDRG 61 Query: 63 GKYSAENLKLV 73 SA N+K + Sbjct: 62 --ASAANVKKI 70 >gi|86360861|ref|YP_472748.1| putative cold shock protein [Rhizobium etli CFN 42] gi|86284963|gb|ABC94021.1| putative cold shock protein [Rhizobium etli CFN 42] Length = 69 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + DVF+H SAV AG+ ++ EGQ + + + Sbjct: 1 MTIGTVKWFNSTKGFGFIQPD---DGSADVFVHISAVERAGMSSIAEGQKLGFQLEHDRK 57 Query: 62 NGKYSAENLK 71 +GK SA L+ Sbjct: 58 SGKMSAGQLQ 67 >gi|54293420|ref|YP_125835.1| hypothetical protein lpl0469 [Legionella pneumophila str. Lens] gi|53753252|emb|CAH14699.1| hypothetical protein lpl0469 [Legionella pneumophila str. Lens] Length = 77 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N KG+GFI PEG G+D+F+H S++ G L GQ VTYD + N Sbjct: 1 MARGEVKWFNNAKGWGFIIPEG---GGEDIFVHFSSIHGTGYKTLVPGQAVTYDVI-NGE 56 Query: 62 NGKYSAENLKLVPKSSN 78 G +++ + L + Sbjct: 57 RGLHASNVIALSENAEQ 73 >gi|288575007|ref|ZP_06393364.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570748|gb|EFC92305.1| cold-shock DNA-binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 65 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFIT TE G+DVF+H SA+ G L E +V ++ N G Sbjct: 2 KGTVKWFNGTKGYGFIT----TEEGNDVFVHFSAIQMDGYKTLEENDVVEFEIT-NGEKG 56 Query: 64 KYSAENLK 71 ++ + Sbjct: 57 PQASNVTR 64 >gi|90023198|ref|YP_529025.1| cold-shock DNA-binding protein family protein [Saccharophagus degradans 2-40] gi|89952798|gb|ABD82813.1| cold-shock DNA-binding protein family [Saccharophagus degradans 2-40] Length = 69 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI +SG DVF H SA+AS+G L EGQ V + Q Sbjct: 6 TGTVKWFNESKGFGFIEQ----KSGPDVFAHFSAIASSGFKTLAEGQQVEFTVTQGQKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -PQAENI 66 >gi|229016428|ref|ZP_04173370.1| Cold shock protein cspB [Bacillus cereus AH1273] gi|229022656|ref|ZP_04179181.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|228738665|gb|EEL89136.1| Cold shock protein cspB [Bacillus cereus AH1272] gi|228744836|gb|EEL94896.1| Cold shock protein cspB [Bacillus cereus AH1273] Length = 67 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ + + Sbjct: 1 MTVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSFEIEEGN 56 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 57 -RGPQAKNVIKL 67 >gi|4454361|emb|CAA72659.1| cold shock protein, CSPA [Vibrio cholerae] Length = 70 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF+T + G+DVF+H +++ S G L EGQ V++ V+ G Sbjct: 6 TGSVKWFNETKGFGFLTQD---NGGNDVFVHLNSIQSEGFKTLAEGQRVSF-IVEQGKKG 61 Query: 64 KYSAENLKL 72 ++ + L Sbjct: 62 PQASNVVAL 70 >gi|223932623|ref|ZP_03624623.1| cold-shock DNA-binding domain protein [Streptococcus suis 89/1591] gi|302023415|ref|ZP_07248626.1| cold shock protein [Streptococcus suis 05HAS68] gi|330832233|ref|YP_004401058.1| cold-shock DNA-binding domain-containing protein [Streptococcus suis ST3] gi|223898733|gb|EEF65094.1| cold-shock DNA-binding domain protein [Streptococcus suis 89/1591] gi|329306456|gb|AEB80872.1| cold-shock DNA-binding domain protein [Streptococcus suis ST3] Length = 67 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI E +G DVF H S + S +L EGQ VT++ Q Sbjct: 1 MVQGTVKWFNAEKGFGFIAQE----NGPDVFAHFSEIQSNSFKSLEEGQKVTFEVEQGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--LQATNITKI 66 >gi|320160229|ref|YP_004173453.1| cold shock protein [Anaerolinea thermophila UNI-1] gi|319994082|dbj|BAJ62853.1| cold shock protein [Anaerolinea thermophila UNI-1] Length = 69 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 5/65 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KGYGFI+ E +G DVF+H SA+ G +L EGQ V + V+ G Sbjct: 7 GTVKWFNSEKGYGFISRE----NGPDVFVHYSAIEGNGYRSLNEGQTVEFK-VEKGPKGL 61 Query: 65 YSAEN 69 +++ Sbjct: 62 QASQV 66 >gi|153854155|ref|ZP_01995463.1| hypothetical protein DORLON_01454 [Dorea longicatena DSM 13814] gi|149753204|gb|EDM63135.1| hypothetical protein DORLON_01454 [Dorea longicatena DSM 13814] Length = 65 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI S G DVF+H S + G L EGQ V Y+ + Sbjct: 2 KGTVKWFNNQKGYGFI----SDAEGHDVFVHYSGLNMEGFKTLEEGQEVEYEVTEGAKG- 56 Query: 64 KYSAENLKLV 73 A N+ + Sbjct: 57 -PQAVNVTPL 65 >gi|254752895|ref|ZP_05204931.1| cold shock protein CspB [Bacillus anthracis str. Vollum] gi|254759167|ref|ZP_05211193.1| cold shock protein CspB [Bacillus anthracis str. Australia 94] Length = 66 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 MQNGKVKWFNSEKGFGFIEVE----GGEDVFVHXSAIQGEGFKTLEEGQEVTFEVEQGNR 56 Query: 62 NGKYSAENLK 71 + + N K Sbjct: 57 GPQATNVNKK 66 >gi|227822300|ref|YP_002826271.1| putative cold shock protein CspA [Sinorhizobium fredii NGR234] gi|227341300|gb|ACP25518.1| putative cold shock protein CspA [Sinorhizobium fredii NGR234] Length = 70 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +K++N DKG+GFITP+G DVF+H SAV +AGL L +GQ V++D + Sbjct: 1 MATKGIVKFFNQDKGFGFITPDG---GAKDVFVHISAVQAAGLATLKDGQQVSFDTEPDR 57 Query: 61 ANGKYSAENLKLV 73 A NL+ + Sbjct: 58 MGKGPKAVNLQAL 70 >gi|146281647|ref|YP_001171800.1| cold shock protein CapB [Pseudomonas stutzeri A1501] gi|145569852|gb|ABP78958.1| cold shock protein CapB [Pseudomonas stutzeri A1501] gi|327479894|gb|AEA83204.1| cold shock protein CapB [Pseudomonas stutzeri DSM 4166] Length = 69 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITP +SGDD+F+H A+ G +L EGQ V++ + Sbjct: 4 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFRAIQGDGFKSLKEGQQVSFVATRGQK 59 Query: 62 NGKYSAENLKLV 73 AE ++++ Sbjct: 60 G--MQAEEVQVI 69 >gi|153821098|ref|ZP_01973765.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae B33] gi|153824664|ref|ZP_01977331.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2] gi|262190586|ref|ZP_06048826.1| cold shock protein CspA [Vibrio cholerae CT 5369-93] gi|126521472|gb|EAZ78695.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae B33] gi|149741620|gb|EDM55649.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2] gi|262033546|gb|EEY52044.1| cold shock protein CspA [Vibrio cholerae CT 5369-93] gi|327485910|gb|AEA80316.1| Cold shock protein CspA [Vibrio cholerae LMA3894-4] Length = 66 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF+T + G+DVF+H +++ S G L EGQ V++ V+ G Sbjct: 2 TGSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLAEGQRVSF-IVEQGKKG 57 Query: 64 KYSAENLKL 72 ++ + L Sbjct: 58 PQASNVVAL 66 >gi|85711368|ref|ZP_01042427.1| Cold shock protein [Idiomarina baltica OS145] gi|85694869|gb|EAQ32808.1| Cold shock protein [Idiomarina baltica OS145] Length = 69 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI + G DVF H SA+ G L EGQ V++ Q Sbjct: 6 NGTVKWFNEAKGFGFIEQ----QGGADVFAHFSAITGDGFKTLNEGQRVSFAITQGPKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -PQAENI 66 >gi|124267389|ref|YP_001021393.1| cold-shock DNA-binding protein family protein [Methylibium petroleiphilum PM1] gi|124260164|gb|ABM95158.1| cold-shock DNA-binding protein family [Methylibium petroleiphilum PM1] Length = 69 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW+N KG+GFI +G G DVF H + G L E Q V ++ Q Sbjct: 3 VQTGTVKWFNEAKGFGFIAQDG---GGADVFAHFRDIQGNGFKTLQENQRVEFEVKQGQK 59 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 60 G--PQAANIRPL 69 >gi|254488402|ref|ZP_05101607.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp. GAI101] gi|214045271|gb|EEB85909.1| putative 'Cold-shock' DNA-binding domain protein [Roseobacter sp. GAI101] Length = 68 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ PEG DVF+H SAV AGL L++ Q +T+D ++ Sbjct: 1 MATGTVKWFNSTKGFGFVAPEG---GSKDVFVHISAVEQAGLTGLSDDQKITFDI-ESGR 56 Query: 62 NGKYSAENLKL 72 +G+ SA N+KL Sbjct: 57 DGRESATNIKL 67 >gi|153837326|ref|ZP_01989993.1| cold shock domain protein CspD [Vibrio parahaemolyticus AQ3810] gi|260365334|ref|ZP_05777885.1| cold shock domain protein CspD [Vibrio parahaemolyticus K5030] gi|260876950|ref|ZP_05889305.1| cold shock domain protein CspD [Vibrio parahaemolyticus AN-5034] gi|260897909|ref|ZP_05906405.1| cold shock domain protein CspD [Vibrio parahaemolyticus Peru-466] gi|260901418|ref|ZP_05909813.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037] gi|149749357|gb|EDM60130.1| cold shock domain protein CspD [Vibrio parahaemolyticus AQ3810] gi|308085479|gb|EFO35174.1| cold shock domain protein CspD [Vibrio parahaemolyticus Peru-466] gi|308093637|gb|EFO43332.1| cold shock domain protein CspD [Vibrio parahaemolyticus AN-5034] gi|308107511|gb|EFO45051.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037] gi|308112690|gb|EFO50230.1| cold shock domain protein CspD [Vibrio parahaemolyticus K5030] gi|328473238|gb|EGF44086.1| cold shock-like protein CspD [Vibrio parahaemolyticus 10329] Length = 72 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + E D+F H S + G L GQ V+Y+ + Sbjct: 1 MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYEI-EKGP 56 Query: 62 NGKYSAENLKLVPKS 76 G +++ + + ++ Sbjct: 57 KGCHASSVVPIEAQA 71 >gi|94968921|ref|YP_590969.1| cold-shock DNA-binding protein family protein [Candidatus Koribacter versatilis Ellin345] gi|94550971|gb|ABF40895.1| cold-shock DNA-binding protein family [Candidatus Koribacter versatilis Ellin345] Length = 66 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI S ++G+DVF+H +A+ + G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFI----SRQNGEDVFVHHTAIQAQGFRSLQEGQAVQFNVVKGPK 56 Query: 62 NGKYSAENLKLV 73 + AEN++ + Sbjct: 57 G--WQAENVQAL 66 >gi|127512543|ref|YP_001093740.1| cold-shock DNA-binding domain-containing protein [Shewanella loihica PV-4] gi|126637838|gb|ABO23481.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4] Length = 68 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V + Q Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 60 -PQAENVTVI 68 >gi|83746258|ref|ZP_00943311.1| Cold shock protein [Ralstonia solanacearum UW551] gi|207742557|ref|YP_002258949.1| cold shock-like protein cspd [Ralstonia solanacearum IPO1609] gi|83727008|gb|EAP74133.1| Cold shock protein [Ralstonia solanacearum UW551] gi|206593950|emb|CAQ60877.1| cold shock-like protein cspd [Ralstonia solanacearum IPO1609] Length = 67 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+ + E G+++F H SA+ G L EGQ V ++ Q Sbjct: 1 MASGTVKWFNDAKGFGFISLD---EGGEELFAHFSAIQMNGFKTLKEGQRVVFEVTQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQATNIQ 65 >gi|239994277|ref|ZP_04714801.1| stress response protein CspD [Alteromonas macleodii ATCC 27126] Length = 72 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI PE + G+D+F H S + G +L GQ VT++ Q Sbjct: 1 MAVGKVKWFNNAKGFGFIVPE---DGGEDIFAHYSTIQMEGYRSLKAGQEVTFEVQQGPK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--LHAENI 64 >gi|326386099|ref|ZP_08207723.1| cold-shock DNA-binding protein family protein [Novosphingobium nitrogenifigens DSM 19370] gi|326209324|gb|EGD60117.1| cold-shock DNA-binding protein family protein [Novosphingobium nitrogenifigens DSM 19370] Length = 80 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKG+GFI P+ E GDD F+H SAV +G+ L + Q V Y+ + D Sbjct: 13 MAIGTVKFFNTDKGFGFIAPD---EGGDDSFVHISAVERSGMRTLLKDQRVKYEL-ETDK 68 Query: 62 NGKYSAENLKLV 73 GK +A NL++V Sbjct: 69 RGKTAAVNLEIV 80 >gi|299138232|ref|ZP_07031411.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX8] gi|298599478|gb|EFI55637.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX8] Length = 66 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GF+ S +GDDVF+H +A+ S G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFL----SRANGDDVFVHHTAIQSNGFRSLQEGQSVQFNVVKGPK 56 Query: 62 NGKYSAENLKLV 73 + AEN+++V Sbjct: 57 G--WQAENVQVV 66 >gi|256391097|ref|YP_003112661.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256357323|gb|ACU70820.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 67 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI +G G DVF+H SA++ +G NL E Q V ++ Q Sbjct: 1 MATGKVKWFNGEKGFGFIEQDG---GGPDVFVHFSAISGSGYRNLEENQAVEFNVTQGPK 57 Query: 62 NGKYSAENLK 71 AE+++ Sbjct: 58 G--PQAEDVR 65 >gi|171777642|ref|ZP_02919307.1| hypothetical protein STRINF_00142 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283170|gb|EDT48594.1| hypothetical protein STRINF_00142 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 67 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ E SG DVF H S + S G +L +GQ V ++ Q Sbjct: 1 MVQGTVKWFNAEKGFGFISQE----SGPDVFAHFSEIQSNGFKSLEDGQKVNFEVEQGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--LQATNITKI 66 >gi|119944526|ref|YP_942206.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119863130|gb|ABM02607.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 68 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF H SA++S G LTEGQ V + Q Sbjct: 5 TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAISSTGFKTLTEGQKVQFTVTQGQKG- 59 Query: 64 KYSAENL 70 AEN+ Sbjct: 60 -PQAENI 65 >gi|303233532|ref|ZP_07320194.1| cold shock protein CspA [Finegoldia magna BVS033A4] gi|302495370|gb|EFL55114.1| cold shock protein CspA [Finegoldia magna BVS033A4] Length = 66 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT E D+F+H+SA+ G L EGQ V+YD +D Sbjct: 1 MSNGTVKWFNSTKGFGFIT----GEDNKDIFVHQSAIQEDGFRTLEEGQKVSYDVEASD- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 KGDRAVNVVKL 66 >gi|226365143|ref|YP_002782926.1| cold shock protein [Rhodococcus opacus B4] gi|226243633|dbj|BAH53981.1| cold shock protein [Rhodococcus opacus B4] Length = 67 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI PE + DVF+H S + S G L E Q V+++ Q + Sbjct: 1 MAEGIVKWFNSEKGFGFIAPE---DGSADVFVHYSEIQSGGFRTLEENQRVSFEIGQGNK 57 Query: 62 NGKYSAENLKLV 73 A + ++ Sbjct: 58 G--PQATGVSVI 67 >gi|115522947|ref|YP_779858.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115516894|gb|ABJ04878.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisA53] Length = 70 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL +L EGQ ++++ + Sbjct: 1 MAMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVERAGLKDLIEGQRISFEVEPDK 57 Query: 61 ANGKYSAENLKL 72 A NL + Sbjct: 58 KGKGPKAVNLVI 69 >gi|198282878|ref|YP_002219199.1| cold-shock DNA-binding domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666777|ref|YP_002425079.1| cold-shock protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247399|gb|ACH82992.1| cold-shock DNA-binding domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518990|gb|ACK79576.1| cold-shock protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 67 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITPE + +DVF+H SA+ G L EG+ V ++ + Sbjct: 1 MAVGTVKWFNDSKGFGFITPE---DGKEDVFVHHSAIEGTGFKTLAEGERVNFEVTRGPK 57 Query: 62 NGKYSAENLK 71 AE ++ Sbjct: 58 G--LQAEKVR 65 >gi|257790734|ref|YP_003181340.1| cold-shock DNA-binding domain-containing protein [Eggerthella lenta DSM 2243] gi|257474631|gb|ACV54951.1| cold-shock DNA-binding domain protein [Eggerthella lenta DSM 2243] Length = 67 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+NP+KGYGFI+ + G+D+F+H S + G L EG V +D Sbjct: 1 MAEGTVKWFNPEKGYGFISQ----KDGEDLFVHFSEIKMDGFKTLDEGSAVQFDVT-TGQ 55 Query: 62 NGKYSAENLK 71 NGK A N+ Sbjct: 56 NGKLQASNVT 65 >gi|187250904|ref|YP_001875386.1| cold-shock DNA-binding domain-containing protein [Elusimicrobium minutum Pei191] gi|186971064|gb|ACC98049.1| Cold-shock DNA-binding domain protein [Elusimicrobium minutum Pei191] Length = 66 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KGYGF+TPE + D+F+H + G L+EGQ V +D V++D Sbjct: 1 MAKGKVKWFNDQKGYGFVTPE---DGSKDLFVHYQEIKGEGFKTLSEGQEVEFDIVESDK 57 Query: 62 NGKYSAENLK 71 K A N++ Sbjct: 58 GPK--AVNVR 65 >gi|163737381|ref|ZP_02144798.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis BS107] gi|163740951|ref|ZP_02148344.1| cold shock family protein [Phaeobacter gallaeciensis 2.10] gi|161385942|gb|EDQ10318.1| cold shock family protein [Phaeobacter gallaeciensis 2.10] gi|161388907|gb|EDQ13259.1| cold-shock DNA-binding domain protein [Phaeobacter gallaeciensis BS107] Length = 68 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PEG G DVF+H S V +GL L + Q V ++ + Sbjct: 1 MASGTVKWFNTTKGYGFIEPEG---GGKDVFVHISQVERSGLTGLADNQKVDFEMTEG-R 56 Query: 62 NGKYSAENLK 71 +G+ A +++ Sbjct: 57 DGRQMASDIR 66 >gi|116627693|ref|YP_820312.1| cold shock protein [Streptococcus thermophilus LMD-9] gi|116100970|gb|ABJ66116.1| cold-shock DNA-binding protein family [Streptococcus thermophilus LMD-9] gi|312278226|gb|ADQ62883.1| Cold shock-like protein cspE [Streptococcus thermophilus ND03] Length = 66 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT +E G D+F H S++ S G +L E Q V +D Sbjct: 1 MANGTVKWFNATKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFDVEVGQR 56 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 57 G--PQAVNIT 64 >gi|209695649|ref|YP_002263578.1| cold shock-like protein CspD [Aliivibrio salmonicida LFI1238] gi|208009601|emb|CAQ79897.1| cold shock-like protein CspD [Aliivibrio salmonicida LFI1238] Length = 73 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG D+F H S + G L GQ VTY+ + Sbjct: 1 MAIGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIEMDGYRTLKAGQAVTYEIHEGPK 57 Query: 62 NGKYSAENLKLVPKSS 77 Y A +K + + Sbjct: 58 G--YHASEIKPLEGEA 71 >gi|254448335|ref|ZP_05061796.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium HTCC5015] gi|198261948|gb|EDY86232.1| 'Cold-shock' DNA-binding domain, putative [gamma proteobacterium HTCC5015] Length = 69 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFI E G DVF+H SA+ G +L EGQ V+++ Sbjct: 6 NGTVKWFNDDKGFGFIQQE----GGPDVFVHFSAINGTGRRSLAEGQAVSFEITDGQKG- 60 Query: 64 KYSAENLK 71 A N+ Sbjct: 61 -PQASNVT 67 >gi|192359729|ref|YP_001980822.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107] gi|190685894|gb|ACE83572.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107] Length = 75 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKGYGFI E G DVF+H A+ G L EGQ VT++ Q Sbjct: 13 GVVKWFNDDKGYGFIERE----GGADVFVHFRAINGTGRRTLKEGQKVTFEVTQGQKG-- 66 Query: 65 YSAENLKLV 73 AEN+ + Sbjct: 67 PQAENVTPL 75 >gi|190575103|ref|YP_001972948.1| putative cold shock protein [Stenotrophomonas maltophilia K279a] gi|190013025|emb|CAQ46657.1| putative cold shock protein [Stenotrophomonas maltophilia K279a] Length = 69 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI+ E +G+DVF+H A+ + G +L EGQ VT+ VQ Sbjct: 4 RETGTVKWFNDAKGFGFISRE----NGEDVFVHFRAIQTQGFKSLKEGQKVTFTVVQGQK 59 Query: 62 NGKYSAE 68 + A Sbjct: 60 GLQADAV 66 >gi|63148792|gb|AAY34518.1| cold shock protein [Bacillus thuringiensis serovar tolworthi] Length = 61 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 5/65 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q + G Sbjct: 1 GIVKWFNSEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN-RGP 55 Query: 65 YSAEN 69 +A Sbjct: 56 PAANV 60 >gi|330447207|ref|ZP_08310857.1| cold shock protein CspG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491398|dbj|GAA05354.1| cold shock protein CspG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 70 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GF+T G DVF+H A+AS G LTEGQ V++D Q G Sbjct: 7 GLVKWFNEEKGFGFLTQ---NNGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQGQ-KGL 62 Query: 65 YSAENLKL 72 +A + L Sbjct: 63 QAANVVSL 70 >gi|209693681|ref|YP_002261609.1| cold shock protein [Aliivibrio salmonicida LFI1238] gi|208007632|emb|CAQ77736.1| cold shock protein [Aliivibrio salmonicida LFI1238] Length = 69 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 5 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIASEGFKTLKEGQKVSFEVEQGQ-KG 60 Query: 64 KYSAENL 70 ++ + Sbjct: 61 PQASNVV 67 >gi|39995317|ref|NP_951268.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA] gi|39982079|gb|AAR33541.1| cold-shock domain family protein [Geobacter sulfurreducens PCA] gi|298504323|gb|ADI83046.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens KN400] Length = 66 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ E +G+DVF+H SA+ G +L EG VT++ + Sbjct: 1 MVNGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAINGNGFKSLAEGDRVTFEVTKG-P 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGLQAANVTRI 66 >gi|330819166|ref|YP_004348028.1| cold-shock DNA-binding domain protein [Burkholderia gladioli BSR3] gi|327371161|gb|AEA62516.1| cold-shock DNA-binding domain protein [Burkholderia gladioli BSR3] Length = 67 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ GDD+F H S V+ G L E Q V+++ + Sbjct: 1 MDTGIVKWFNDSKGFGFITPD---NGGDDLFAHFSEVSGDGFKTLAENQKVSFETKRGPK 57 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 58 G--MQAANIKPL 67 >gi|219881898|gb|ACL52164.1| cold response protein 1 [Metarhizium anisopliae] gi|322693450|gb|EFY85310.1| cold response protein 1 [Metarhizium acridum CQMa 102] gi|322707280|gb|EFY98859.1| cold response protein 1 [Metarhizium anisopliae ARSEF 23] Length = 70 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N +KGYGFITPE SG D+F+H A+ +G +L EGQ VT++ VQ Sbjct: 4 RQNGVVKWFNEEKGYGFITPE----SGPDLFVHFRAIEGSGFRSLKEGQAVTFEAVQGQK 59 Query: 62 NGKYSAENLKL 72 A+ +++ Sbjct: 60 G--MQADKVQV 68 >gi|156973854|ref|YP_001444761.1| hypothetical protein VIBHAR_01564 [Vibrio harveyi ATCC BAA-1116] gi|156525448|gb|ABU70534.1| hypothetical protein VIBHAR_01564 [Vibrio harveyi ATCC BAA-1116] Length = 79 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + E D+F H S + G L GQ V+Y+ + Sbjct: 8 MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYEI-EKGP 63 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 64 KGSHASSVVPI 74 >gi|302557419|ref|ZP_07309761.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302475037|gb|EFL38130.1| conserved domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 67 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A G L EGQ VT+D Q Sbjct: 1 MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAGQGFRELLEGQKVTFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|302873916|ref|YP_003842549.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|307689837|ref|ZP_07632283.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|302576773|gb|ADL50785.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans 743B] Length = 65 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFIT E G DVF H S + S G +L E Q V+Y+ V Sbjct: 2 NGTVKWFNAQKGFGFIT----GEDGKDVFAHFSKINSDGYKSLEENQKVSYEVVDGQKG- 56 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 57 -PQAENITII 65 >gi|330940302|gb|EGH43422.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi str. 1704B] Length = 91 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI EG+ E D+F H SA+ G L GQ V ++ VQ Sbjct: 1 MIEGKVKWFNNAKGFGFINAEGNDE---DLFAHFSAIEMDGYKTLKAGQKVRFEVVQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|157962306|ref|YP_001502340.1| cold-shock DNA-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|167623727|ref|YP_001674021.1| cold-shock DNA-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|170726405|ref|YP_001760431.1| cold-shock DNA-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|212635812|ref|YP_002312337.1| DNA-binding cold shock protein [Shewanella piezotolerans WP3] gi|157847306|gb|ABV87805.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC 700345] gi|167353749|gb|ABZ76362.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis HAW-EB4] gi|169811752|gb|ACA86336.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC 51908] gi|212557296|gb|ACJ29750.1| Cold shock protein, DNA-binding [Shewanella piezotolerans WP3] Length = 68 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI E SG DVF+H A+ S G L EGQ V + Q Sbjct: 5 TGVVKWFNSDKGFGFIEQE----SGPDVFVHFRAINSDGFKTLDEGQKVQFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ +V Sbjct: 60 -PQAENVTVV 68 >gi|59713168|ref|YP_205944.1| cold shock protein [Vibrio fischeri ES114] gi|197334115|ref|YP_002157348.1| cold-shock' DNA-binding domain, putative [Vibrio fischeri MJ11] gi|59481269|gb|AAW87056.1| cold shock protein [Vibrio fischeri ES114] gi|197315605|gb|ACH65052.1| cold-shock' DNA-binding domain, putative [Vibrio fischeri MJ11] Length = 69 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+A+ G L EGQ VT+ Q G Sbjct: 5 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAIATEGFKTLKEGQAVTFTVEQGQ-KG 60 Query: 64 KYSAEN 69 +A+ Sbjct: 61 PQAADV 66 >gi|51245724|ref|YP_065608.1| cold-shock protein (CspB) [Desulfotalea psychrophila LSv54] gi|50876761|emb|CAG36601.1| probable cold-shock protein (CspB) [Desulfotalea psychrophila LSv54] Length = 66 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI E GDD+F+H +++ ++G L EG V+++ ++ A Sbjct: 1 MAEGIVKWFNDAKGFGFIEQE----GGDDLFVHHTSINASGFKTLEEGARVSFEI-EDGA 55 Query: 62 NGKYSAENLKL 72 G +A L Sbjct: 56 KGPAAANVTAL 66 >gi|116254513|ref|YP_770349.1| putative cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841] gi|115259161|emb|CAK10276.1| putative cold shock protein CspA [Rhizobium leguminosarum bv. viciae 3841] Length = 67 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKG+GFITPE G DVF+H SA+ G +L EG VT++ Q+ Sbjct: 1 MPTGTVKFFNDDKGFGFITPET---GGTDVFVHVSALQQGG--SLREGDKVTFEVGQDRK 55 Query: 62 NGKYSAENLKLV 73 GK AEN+ ++ Sbjct: 56 TGKSKAENVSVL 67 >gi|58038548|ref|YP_190512.1| putative transcriptional regulator cold shock protein [Gluconobacter oxydans 621H] gi|58000962|gb|AAW59856.1| Putative transcriptional regulator cold shock protein [Gluconobacter oxydans 621H] Length = 228 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 4/65 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KWYN KG+GFITPE G D+F+H SA+ +GL L EGQ + VQ G Sbjct: 164 RGTVKWYNATKGFGFITPES---GGKDIFVHASALERSGLPTLDEGQTINVKVVQGQ-KG 219 Query: 64 KYSAE 68 +AE Sbjct: 220 PEAAE 224 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW+N +KG+GF+ ++ D+FLH +A+ +AG+ N+ G V Q G+ Sbjct: 63 RVKWFNTEKGFGFVE---LSDGSGDIFLHANALTNAGVSNVNPGATVVVRIGQG-PKGRQ 118 Query: 66 SAENLKLVPKSSN 78 AE L + ++ Sbjct: 119 VAEVLSVDESTAE 131 >gi|330830980|ref|YP_004393932.1| Cold shock-like protein cspE [Aeromonas veronii B565] gi|328806116|gb|AEB51315.1| Cold shock-like protein cspE [Aeromonas veronii B565] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI G DVF+H S++ S G L EGQ V + Q Sbjct: 4 IRTGQVKWFNETKGFGFIEQSQ----GPDVFVHFSSIQSTGFKTLAEGQKVQFTVTQGKK 59 Query: 62 NGKYSAENLKLV 73 AEN+ LV Sbjct: 60 G--PQAENVTLV 69 >gi|222054634|ref|YP_002536996.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] gi|221563923|gb|ACM19895.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] Length = 66 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI + +G+DVF+H SA+ G +L EG+ V++D N Sbjct: 1 MAQGKVKWFNDAKGFGFIEQD----NGEDVFVHFSAIVGEGFKSLAEGEAVSFDVT-NGP 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 KGLQAANVKKI 66 >gi|78485401|ref|YP_391326.1| cold-shock DNA-binding domain-containing protein [Thiomicrospira crunogena XCL-2] gi|78363687|gb|ABB41652.1| cold-shock DNA-binding protein family [Thiomicrospira crunogena XCL-2] Length = 68 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF H SA+ S+G L EGQ V + + G Sbjct: 5 TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAIVSSGFKTLAEGQKVEFTVT-DGPKG 59 Query: 64 KYSAENLKL 72 + + L Sbjct: 60 PQAENIVAL 68 >gi|256391893|ref|YP_003113457.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256358119|gb|ACU71616.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 67 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+ +KG+GFI + + G DVF H S +++ G L EGQ V ++ Q+ Sbjct: 1 MTVGTVKWFKAEKGFGFIEQD---DGGPDVFAHFSNISAEGFRELLEGQRVEFEIAQSPK 57 Query: 62 NGKYSAENLKLV 73 AEN++ + Sbjct: 58 G--PHAENIRPI 67 >gi|116249427|ref|YP_765268.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|241113498|ref|YP_002973333.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115254077|emb|CAK12474.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|240861706|gb|ACS59372.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 67 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKG+GFITPEG G DVF+H SA+ S G +L EG V+++ Q+ Sbjct: 1 MPTGTVKFFNDDKGFGFITPEG---GGQDVFVHVSALQSGG--SLREGDKVSFEVGQDRK 55 Query: 62 NGKYSAENLKLV 73 GK AEN+ + Sbjct: 56 TGKSKAENVSTL 67 >gi|94269264|ref|ZP_01291414.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1] gi|93451280|gb|EAT02166.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1] Length = 66 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI + SG DVF+H +A+ G +L EG V ++ V Sbjct: 1 MAEGTVKWFNDAKGYGFIAQD----SGSDVFVHHTAIEGQGFKSLQEGARVEFEIVDGPK 56 Query: 62 NGKYSAENLK 71 +A N++ Sbjct: 57 G--PAAGNVR 64 >gi|325923004|ref|ZP_08184708.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC 19865] gi|325546512|gb|EGD17662.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC 19865] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++ V Sbjct: 60 G--MQADQVQAV 69 >gi|153954443|ref|YP_001395208.1| hypothetical protein CKL_1818 [Clostridium kluyveri DSM 555] gi|219855034|ref|YP_002472156.1| hypothetical protein CKR_1691 [Clostridium kluyveri NBRC 12016] gi|146347324|gb|EDK33860.1| Hypothetical protein CKL_1818 [Clostridium kluyveri DSM 555] gi|219568758|dbj|BAH06742.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 65 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT E G+DVF H S + S G L EGQ V++D + Sbjct: 2 TGTVKWFNENKGFGFIT----GEDGNDVFAHFSQINSEGYKTLEEGQKVSFDKTRGQKG- 56 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 57 -PQAENITVL 65 >gi|28871287|ref|NP_793906.1| cold shock protein CapB [Pseudomonas syringae pv. tomato str. DC3000] gi|66047111|ref|YP_236952.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|70728640|ref|YP_258389.1| cold acclimation protein B-like protein [Pseudomonas fluorescens Pf-5] gi|71736780|ref|YP_273637.1| cold shock protein CapB [Pseudomonas syringae pv. phaseolicola 1448A] gi|77457428|ref|YP_346933.1| cold-shock DNA-binding protein family protein [Pseudomonas fluorescens Pf0-1] gi|213970877|ref|ZP_03399000.1| cold acclimation protein B-related protein [Pseudomonas syringae pv. tomato T1] gi|229588835|ref|YP_002870954.1| cold shock protein [Pseudomonas fluorescens SBW25] gi|237798785|ref|ZP_04587246.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|257486637|ref|ZP_05640678.1| cold shock protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626589|ref|ZP_06459543.1| cold shock protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647565|ref|ZP_06478908.1| cold shock protein [Pseudomonas syringae pv. aesculi str. 2250] gi|289676765|ref|ZP_06497655.1| cold shock protein [Pseudomonas syringae pv. syringae FF5] gi|298488746|ref|ZP_07006775.1| Cold shock protein capB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301383772|ref|ZP_07232190.1| cold shock protein [Pseudomonas syringae pv. tomato Max13] gi|302059920|ref|ZP_07251461.1| cold shock protein [Pseudomonas syringae pv. tomato K40] gi|302184709|ref|ZP_07261382.1| cold shock protein [Pseudomonas syringae pv. syringae 642] gi|312959425|ref|ZP_07773942.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] gi|330807866|ref|YP_004352328.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|60391849|sp|P0A105|CAPB_PSESM RecName: Full=Cold shock protein CapB; AltName: Full=Cold acclimation protein B gi|60391850|sp|P0A106|CAPB_PSEFR RecName: Full=Cold shock protein CapB; AltName: Full=C8.0; AltName: Full=Cold acclimation protein B gi|1513081|gb|AAC45997.1| cold acclimation protein B [Pseudomonas fragi] gi|28854537|gb|AAO57601.1| cold shock protein CapB [Pseudomonas syringae pv. tomato str. DC3000] gi|63257818|gb|AAY38914.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|68342939|gb|AAY90545.1| cold acclimation protein B-related protein [Pseudomonas fluorescens Pf-5] gi|71557333|gb|AAZ36544.1| cold shock protein CapB [Pseudomonas syringae pv. phaseolicola 1448A] gi|77381431|gb|ABA72944.1| cold shock protein [Pseudomonas fluorescens Pf0-1] gi|213924400|gb|EEB57972.1| cold acclimation protein B-related protein [Pseudomonas syringae pv. tomato T1] gi|229360701|emb|CAY47559.1| cold shock protein [Pseudomonas fluorescens SBW25] gi|298156819|gb|EFH97910.1| Cold shock protein capB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|311286142|gb|EFQ64706.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] gi|320325639|gb|EFW81701.1| cold shock protein [Pseudomonas syringae pv. glycinea str. B076] gi|320327078|gb|EFW83092.1| cold shock protein [Pseudomonas syringae pv. glycinea str. race 4] gi|327375974|gb|AEA67324.1| putative Transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|330889578|gb|EGH22239.1| cold shock protein [Pseudomonas syringae pv. mori str. 301020] gi|330898586|gb|EGH30005.1| cold shock protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330949989|gb|EGH50249.1| cold shock protein [Pseudomonas syringae Cit 7] gi|330973105|gb|EGH73171.1| cold shock protein [Pseudomonas syringae pv. aceris str. M302273PT] gi|331015681|gb|EGH95737.1| cold shock protein [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331021638|gb|EGI01695.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V++ + Sbjct: 4 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQK 59 Query: 62 NGKYSAENLKLV 73 AE ++++ Sbjct: 60 G--MQAEEVQVI 69 >gi|89076141|ref|ZP_01162499.1| putative Cold shock-like protein [Photobacterium sp. SKA34] gi|89048151|gb|EAR53735.1| putative Cold shock-like protein [Photobacterium sp. SKA34] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GFIT + G DVF+H A+ G L EGQ V +D Q G Sbjct: 5 TGIVKWFNEEKGFGFITQD---NGGADVFVHFRAITGEGFKTLAEGQKVAFDIEQGQ-KG 60 Query: 64 KYSAEN 69 +A Sbjct: 61 PQAANV 66 >gi|332524835|ref|ZP_08401026.1| cold-shock DNA-binding protein family protein [Rubrivivax benzoatilyticus JA2] gi|332108135|gb|EGJ09359.1| cold-shock DNA-binding protein family protein [Rubrivivax benzoatilyticus JA2] Length = 70 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KG+GFI P+ + G D+F H + +G L E Q V ++ Q Sbjct: 4 QTGTVKWFNEGKGFGFIAPD---DGGKDLFAHFKEIQGSGFKTLVENQRVEFEVTQGQKG 60 Query: 63 GKYS 66 + S Sbjct: 61 PQAS 64 >gi|109897864|ref|YP_661119.1| cold-shock DNA-binding domain-containing protein [Pseudoalteromonas atlantica T6c] gi|332307142|ref|YP_004434993.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|109700145|gb|ABG40065.1| cold-shock DNA-binding protein family [Pseudoalteromonas atlantica T6c] gi|332174471|gb|AEE23725.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 68 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H A+ G L EGQ V + Q Sbjct: 5 TGTVKWFNESKGFGFIQQE----NGPDVFAHFRAITGTGFKTLAEGQKVEFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 60 -PQAENIVVL 68 >gi|134295036|ref|YP_001118771.1| cold-shock DNA-binding protein family protein [Burkholderia vietnamiensis G4] gi|134138193|gb|ABO53936.1| cold-shock DNA-binding protein family [Burkholderia vietnamiensis G4] Length = 67 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V+++ V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMEGFKTLKENQRVSFE-VKVGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|163785451|ref|ZP_02180055.1| cold-shock domain family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879277|gb|EDP73177.1| cold-shock domain family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 76 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFIT + ++ D+F+H SA+ G NL EG+ V ++ VQ + G Sbjct: 12 TGTVKWFNSKKGFGFITRD---DNQGDIFVHYSAIEGEGFKNLEEGEKVEFEVVQEE-KG 67 Query: 64 KYSAENLKL 72 + + +KL Sbjct: 68 PRAQKVVKL 76 >gi|91805295|gb|ABE65379.1| CspC [Escherichia coli] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+ FITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFRFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 61 P-AAVNVTAI 69 >gi|77362000|ref|YP_341574.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125] gi|119470716|ref|ZP_01613384.1| Cold shock protein [Alteromonadales bacterium TW-7] gi|332533004|ref|ZP_08408874.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505] gi|76876911|emb|CAI89128.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125] gi|119446186|gb|EAW27464.1| Cold shock protein [Alteromonadales bacterium TW-7] gi|332037483|gb|EGI73936.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E +G DVF H SA+ S G L EGQ V + Q Sbjct: 7 GTVKWFNESKGFGFIEQE----NGPDVFAHFSAIKSEGFKTLAEGQRVEFTLSQGQKG-- 60 Query: 65 YSAENLKLV 73 A+N+ V Sbjct: 61 PQADNITAV 69 >gi|194292705|ref|YP_002008612.1| cold shock protein, transcription antiterminator [Cupriavidus taiwanensis LMG 19424] gi|193226609|emb|CAQ72560.1| cold shock protein, transcription antiterminator [Cupriavidus taiwanensis LMG 19424] Length = 67 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E G+D+F H SA+ +G +L EGQ V Y Sbjct: 1 METGTVKWFNDAKGFGFITPD---EGGNDLFAHFSAIEGSGFKSLKEGQKVRY-VKAMGQ 56 Query: 62 NGKYS 66 G+ + Sbjct: 57 KGEQA 61 >gi|229526207|ref|ZP_04415611.1| cold shock protein CspG [Vibrio cholerae bv. albensis VL426] gi|229336365|gb|EEO01383.1| cold shock protein CspG [Vibrio cholerae bv. albensis VL426] Length = 70 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI+ + G DVF+H ++ S G L EGQ V++ Q D G Sbjct: 6 TGSVKWFNETKGFGFISQD---NGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQ-DKKG 61 Query: 64 KYSAENLKL 72 +A+ L Sbjct: 62 PQAAQVTAL 70 >gi|189425683|ref|YP_001952860.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ] gi|189421942|gb|ACD96340.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ] Length = 66 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GF+ E G+DVF+H SA+ S G +L EG V ++ V+ Sbjct: 1 MTTGRVKWFNDSKGFGFLEQE----GGEDVFVHFSAINSNGFKSLAEGDTVEFEVVKG-P 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGLQAANVTRI 66 >gi|242239550|ref|YP_002987731.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] gi|242131607|gb|ACS85909.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech703] Length = 70 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP+ DVF+H SA+ S L EGQ V + +Q G Sbjct: 6 TGLVKWFDAGKGFGFITPD---NGSKDVFVHFSAIQSDDYKTLYEGQKVEF-VIQQGQKG 61 Query: 64 KYSAENLKLV 73 +A N+ ++ Sbjct: 62 P-AAGNVTVL 70 >gi|126173707|ref|YP_001049856.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS155] gi|125996912|gb|ABN60987.1| cold-shock DNA-binding protein family [Shewanella baltica OS155] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P+ G D F+H A+ S G L EGQ V++D Q Sbjct: 5 TGVVKWFNEDKGFGFISPD---NGGADAFVHFRAIVSEGFKTLAEGQKVSFDIEQGQKG- 60 Query: 64 KYSAENLKLV 73 A N+ ++ Sbjct: 61 -PQAGNVVIL 69 >gi|307315884|ref|ZP_07595388.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307322018|ref|ZP_07601396.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306892307|gb|EFN23115.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306898474|gb|EFN29157.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 90 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++ DKG+GFITP+ G DVF+H SA+ G +L +GQ V+Y+ Q+ Sbjct: 24 MATGTVKFFAQDKGFGFITPDS---GGPDVFVHISALGFGG--SLQDGQKVSYELGQDRK 78 Query: 62 NGKYSAENLKLV 73 GK AEN+ ++ Sbjct: 79 TGKSKAENVSIL 90 >gi|254249432|ref|ZP_04942752.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184] gi|124875933|gb|EAY65923.1| Cold-shock protein, DNA-binding [Burkholderia cenocepacia PC184] Length = 67 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFITP+ GDD+F H S + G L EGQ V+Y+ ++ Sbjct: 1 MDTGTVKWFNDNKGFGFITPDS---GGDDLFAHFSEIRGDGFKMLAEGQKVSYE-TKHGP 56 Query: 62 NGKYSAENL 70 G ++ + Sbjct: 57 KGLQASNIV 65 >gi|293402171|ref|ZP_06646309.1| cold shock protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304278|gb|EFE45529.1| cold shock protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 66 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N DKG+GFIT ++ G+D+F+H + + G L EG V++D ND Sbjct: 1 MSTGKVKWFNADKGFGFIT----SDEGNDIFVHYTEIQGNGFRTLEEGAKVSFDIKTNDR 56 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 57 G--DHAANVNVL 66 >gi|225459483|ref|XP_002285837.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 228 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW++ KG+GFI P+ + G+D+F+H++++ S G L+EG+ V + V + +G Sbjct: 8 TGTVKWFSGQKGFGFIAPD---DGGEDLFVHQTSIRSDGFRTLSEGETVEF-AVDHGEDG 63 Query: 64 KYSAENLKLV 73 + A + V Sbjct: 64 RTKAVEVTAV 73 >gi|168015213|ref|XP_001760145.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688525|gb|EDQ74901.1| predicted protein [Physcomitrella patens subsp. patens] Length = 187 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFITP+ + GDD+F+H++++ + G +L EG++V + V++ + Sbjct: 14 ETGKVKWFNSSKGFGFITPD---KGGDDLFVHQTSIHAEGFRSLREGEVVEFQ-VESSED 69 Query: 63 GKYSAENLK 71 G+ A + Sbjct: 70 GRTKALAVT 78 >gi|323359207|ref|YP_004225603.1| cold shock proteins [Microbacterium testaceum StLB037] gi|323275578|dbj|BAJ75723.1| cold shock proteins [Microbacterium testaceum StLB037] Length = 67 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFIT G DVF+H S + +G L EGQ V + Sbjct: 1 MTQGTVKWFNAEKGYGFIT----VTDGQDVFVHYSNIEMSGFRVLEEGQAVEFTVGSGQK 56 Query: 62 NGKYSAENLKLV 73 AE+++L+ Sbjct: 57 G--PQAESVRLM 66 >gi|294633722|ref|ZP_06712280.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292830364|gb|EFF88715.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 67 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI EG G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MATGTVKWFNAEKGFGFIEQEG---GGADVFAHYSNIAAQGFRELLEGQKVNFDVAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|146282648|ref|YP_001172801.1| cold-shock protein CspD [Pseudomonas stutzeri A1501] gi|145570853|gb|ABP79959.1| cold-shock protein CspD [Pseudomonas stutzeri A1501] Length = 93 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G E D+F H SA+ G L GQ V ++ +Q Sbjct: 7 MLSGKVKWFNNAKGYGFIVADGGDE---DLFAHYSAIQMEGYRTLKAGQAVMFNILQGPK 63 Query: 62 N------GKYSAENLKLVPKSSN 78 A + P ++ Sbjct: 64 GLHATDIRPQQAVSEATTPAAAQ 86 >gi|91223643|ref|ZP_01258908.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] gi|91191729|gb|EAS77993.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] Length = 70 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ G D+F+H ++ S G L+EGQ V++ Q + Sbjct: 6 TGLVKWFNESKGFGFITPD---NGGSDLFVHFKSIVSDGFKTLSEGQKVSFVVEQGNKG- 61 Query: 64 KYSAENLKLV 73 A+N+ LV Sbjct: 62 -PQADNVTLV 70 >gi|56807801|ref|ZP_00365651.1| COG1278: Cold shock proteins [Streptococcus pyogenes M49 591] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI+ TE+G DVF H SA+ + G L EGQ V + Sbjct: 3 MAQGTVKWFNAEKGFGFIS----TENGQDVFAHFSAIQANGSKTLEEGQKVALSVEEGQR 58 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 59 G--PQAVNITKL 68 >gi|330954575|gb|EGH54835.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7] Length = 92 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI EG ++ +D+F+H SA+ G L GQ V ++ Sbjct: 1 MIEGKVKWFNNAKGFGFINAEGKSD--EDLFVHFSAIEMEGYKTLKAGQKVRFEVAHGPK 58 Query: 62 N 62 Sbjct: 59 G 59 >gi|302185011|ref|ZP_07261684.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae 642] Length = 92 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI EG ++ +D+F+H SA+ G L GQ V ++ Sbjct: 1 MIEGKVKWFNNAKGFGFINAEGKSD--EDLFVHFSAIEMDGYKTLKAGQKVRFEVAHGPK 58 Query: 62 NGKYSAENLKLVPKS 76 + N VPK Sbjct: 59 GLQAIKINGSDVPKQ 73 >gi|261212974|ref|ZP_05927258.1| cold shock protein CspA [Vibrio sp. RC341] gi|260838039|gb|EEX64716.1| cold shock protein CspA [Vibrio sp. RC341] Length = 66 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF+T + G+DVF+H +++ S G LTEGQ V++ Q G Sbjct: 2 TGSVKWFNETKGFGFLTQD---NGGNDVFVHFNSIQSEGFKTLTEGQRVSFTVEQG-KKG 57 Query: 64 KYSAENLKL 72 ++ + L Sbjct: 58 PQASNVVTL 66 >gi|149192133|ref|ZP_01870355.1| cold shock-like protein CspD [Vibrio shilonii AK1] gi|148834036|gb|EDL51051.1| cold shock-like protein CspD [Vibrio shilonii AK1] Length = 73 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI PEG D+F H S + G L GQ V Y+ + Sbjct: 1 MATGTVKWFNNAKGFGFICPEGED---GDIFAHYSTIKMDGYRTLKAGQQVNYEVEEGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|332295605|ref|YP_004437528.1| cold-shock DNA-binding domain protein [Thermodesulfobium narugense DSM 14796] gi|332178708|gb|AEE14397.1| cold-shock DNA-binding domain protein [Thermodesulfobium narugense DSM 14796] Length = 68 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KGYGFI+ + + DVF+H SA+ G L +GQ V ++ V + Sbjct: 1 MFLGKVKWFNNEKGYGFISKD---DGSGDVFVHYSAIQGKGFRTLEQGQAVQFEIV-DGP 56 Query: 62 NGKYSAENLKL 72 G ++ K+ Sbjct: 57 KGPQASNVTKV 67 >gi|224078196|ref|XP_002305502.1| predicted protein [Populus trichocarpa] gi|222848466|gb|EEE86013.1| predicted protein [Populus trichocarpa] Length = 207 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW++ KG+GFI+P+ + DD+F+H+S++ S G +L +G+ V + ++N Sbjct: 4 RQTGKVKWFSDQKGFGFISPD---DGSDDLFVHQSSIKSEGYRSLGDGEEVEF-VIENSD 59 Query: 62 NGKYSAENLK 71 +G+ A ++ Sbjct: 60 DGRTKAVDVT 69 >gi|167035306|ref|YP_001670537.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida GB-1] gi|170720314|ref|YP_001748002.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida W619] gi|166861794|gb|ABZ00202.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1] gi|169758317|gb|ACA71633.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFITP +SGDD+F+H A+ + G L EGQ VT+ + Sbjct: 4 RQNGTVKWFNDEKGYGFITP----QSGDDLFVHFKAIQADGFKTLKEGQAVTFVATRGQK 59 Query: 62 NGKYSAENLKL 72 AE +++ Sbjct: 60 G--MQAEEVQI 68 >gi|257057657|ref|YP_003135489.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] gi|256587529|gb|ACU98662.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] Length = 67 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI +G DVF+H S + G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAQDGGE---GDVFVHYSEIEGRGFRTLEENQRVEFEVGQGQK 57 Query: 62 NGKYS 66 + Sbjct: 58 GPQAQ 62 >gi|222106593|ref|YP_002547384.1| cold shock protein [Agrobacterium vitis S4] gi|221737772|gb|ACM38668.1| cold shock protein [Agrobacterium vitis S4] Length = 70 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++K++N DKG+GFITPEG DVF+H SA+ +AG+ L +GQ VT+D + Sbjct: 1 MAIKGTVKFFNQDKGFGFITPEG---GAKDVFVHISALQAAGIQTLRDGQEVTFDTEADR 57 Query: 61 ANGKYSAENLK 71 A N++ Sbjct: 58 MGKGPKAVNIR 68 >gi|152997616|ref|YP_001342451.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150838540|gb|ABR72516.1| putative cold-shock DNA-binding domain protein [Marinomonas sp. MWYL1] Length = 70 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E G DVF+H ++ +G L EGQ VT++ Q Sbjct: 8 GIVKWFNDEKGFGFIERE----GGPDVFVHFRSINGSGRRTLQEGQKVTFEVTQGQKG-- 61 Query: 65 YSAENLKLV 73 AEN+ V Sbjct: 62 PQAENVTPV 70 >gi|169825043|ref|YP_001692654.1| cold shock protein [Finegoldia magna ATCC 29328] gi|302379354|ref|ZP_07267841.1| cold shock protein CspA [Finegoldia magna ACS-171-V-Col3] gi|167831848|dbj|BAG08764.1| cold shock protein [Finegoldia magna ATCC 29328] gi|302312699|gb|EFK94693.1| cold shock protein CspA [Finegoldia magna ACS-171-V-Col3] Length = 66 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFIT E D+F+H+SA+ G L EGQ V+YD +D Sbjct: 1 MSNGTVKWFNSTKGFGFIT----GEDNKDIFVHQSAIQEEGFRTLEEGQKVSYDVEASD- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 KGDRAVNVVKL 66 >gi|90581456|ref|ZP_01237250.1| putative Cold shock-like protein [Vibrio angustum S14] gi|90437317|gb|EAS62514.1| putative Cold shock-like protein [Vibrio angustum S14] Length = 70 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GF+T + G DVF+H A+AS G LTEGQ V++D Q G Sbjct: 7 GLVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQGQ-KGL 62 Query: 65 YSAENLKL 72 +A + L Sbjct: 63 QAANVVGL 70 >gi|21243129|ref|NP_642711.1| major cold shock protein [Xanthomonas axonopodis pv. citri str. 306] gi|78048148|ref|YP_364323.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325928087|ref|ZP_08189300.1| cold-shock DNA-binding protein family [Xanthomonas perforans 91-118] gi|21108648|gb|AAM37247.1| major cold shock protein [Xanthomonas axonopodis pv. citri str. 306] gi|78036578|emb|CAJ24269.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541585|gb|EGD13114.1| cold-shock DNA-binding protein family [Xanthomonas perforans 91-118] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++ V Sbjct: 60 G--MQADQVQAV 69 >gi|302519359|ref|ZP_07271701.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] gi|318056421|ref|ZP_07975144.1| cold-shock protein [Streptomyces sp. SA3_actG] gi|318077529|ref|ZP_07984861.1| cold-shock protein [Streptomyces sp. SA3_actF] gi|302428254|gb|EFL00070.1| cold shock domain-containing protein CspD [Streptomyces sp. SPB78] Length = 67 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +++ G L EGQ V +D Q Sbjct: 1 MSSGTVKWFNAEKGFGFIEQDG---GGPDVFAHYSNISAQGFRELLEGQKVNFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|228924740|ref|ZP_04087911.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834917|gb|EEM80385.1| Cold shock protein cspB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 64 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 + +G++KW+N +KG+GFI E GDDVF+H SA+ G L EGQ VT+D Sbjct: 1 MEKGNVKWFNGEKGFGFIERE----GGDDVFVHFSAIQGEGYKTLEEGQAVTFDLE 52 >gi|298717348|ref|YP_003729990.1| cold shock-like protein cspI [Pantoea vagans C9-1] gi|304395197|ref|ZP_07377081.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|304395198|ref|ZP_07377082.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|298361537|gb|ADI78318.1| Cold shock-like protein cspI [Pantoea vagans C9-1] gi|304357450|gb|EFM21813.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|304357451|gb|EFM21814.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] Length = 70 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFDAGKGFGFISP---QDGSKDVFVHFSAIQSNDYKTLDEGQQVEFTI-ENGAKG 61 Query: 64 KYSAENL 70 +A + Sbjct: 62 PSAANVV 68 >gi|15839211|ref|NP_299899.1| temperature acclimation protein B [Xylella fastidiosa 9a5c] gi|9107847|gb|AAF85419.1|AE004068_15 temperature acclimation protein B [Xylella fastidiosa 9a5c] Length = 85 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFIT + +G D+F+H A+ G +L EGQ V++ VQ Sbjct: 20 RQIGTVKWFNDNKGFGFIT----SNNGPDLFVHYRAIQGNGFKSLQEGQKVSFVAVQGQK 75 Query: 62 NGKYSAENLKLV 73 A+ ++++ Sbjct: 76 G--MQADQVQVL 85 >gi|16760938|ref|NP_456555.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141370|ref|NP_804712.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053459|ref|ZP_03346337.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213421410|ref|ZP_03354476.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424976|ref|ZP_03357726.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580718|ref|ZP_03362544.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213864720|ref|ZP_03386839.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289811876|ref|ZP_06542505.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289829487|ref|ZP_06547099.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|20137745|sp|P58726|CSPJ_SALTI RecName: Full=Cold shock-like protein CspJ gi|25296117|pir||AD0755 cold shock protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503235|emb|CAD05743.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136997|gb|AAO68561.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 70 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+NP+KG+GFITP + DVF+H SA+ S L E Q V + Q G Sbjct: 6 TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQG-PKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVVAL 70 >gi|317471073|ref|ZP_07930446.1| cold-shock DNA-binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901441|gb|EFV23382.1| cold-shock DNA-binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 64 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFIT E + G+DVF+H S +A+ G +L +GQ VT++ Q + Sbjct: 1 GTVKWFNSTKGFGFITNEST---GEDVFVHFSGIAAEGFKSLEDGQKVTFETTQGNRG-- 55 Query: 65 YSAENL 70 A N+ Sbjct: 56 LQAVNV 61 >gi|289152158|gb|ADC84009.1| cold shock-like protein [Escherichia coli] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G + Sbjct: 8 VKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKGP-A 62 Query: 67 AENLKLV 73 A N+ + Sbjct: 63 AVNVTAI 69 >gi|163785452|ref|ZP_02180056.1| cold-shock DNA-binding domain protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879278|gb|EDP73178.1| cold-shock DNA-binding domain protein [Hydrogenivirga sp. 128-5-R1-1] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW++ KG+GFIT E ++G+D+F+H SA+ G NL EG+ V ++ VQ++ Sbjct: 1 MSTTGTVKWFDSKKGFGFITRE---DTGEDIFVHFSAINGQGFKNLEEGEKVEFEVVQDE 57 Query: 61 ANGKYSAENLK 71 G +A K Sbjct: 58 -KGFRAANVTK 67 >gi|149187264|ref|ZP_01865562.1| cold shock protein [Vibrio shilonii AK1] gi|148838800|gb|EDL55739.1| cold shock protein [Vibrio shilonii AK1] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + G++KW+N +KGYGFI E +G DVF+H A++ G L EGQ V++ Q Sbjct: 5 NTGTVKWFNEEKGYGFIAQE----NGPDVFVHFRAISGEGFKTLKEGQAVSFGVEQGQKG 60 Query: 63 GKYSAENL 70 A N+ Sbjct: 61 --PQAVNV 66 >gi|110634484|ref|YP_674692.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp. BNC1] gi|110285468|gb|ABG63527.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1] Length = 70 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N KG+GFITP+ + DVF+H SAV ++GL L +GQ VT+D + Sbjct: 1 MPQSGTVKFFNHAKGFGFITPD---DGQKDVFVHISAVQASGLPGLEDGQKVTFDTEPDK 57 Query: 61 ANGKYSAENLKL 72 A NL + Sbjct: 58 RGKGPKAVNLTI 69 >gi|91228780|ref|ZP_01262689.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] gi|254228854|ref|ZP_04922276.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25] gi|262396796|ref|YP_003288649.1| cold shock transcriptional regulator CspA [Vibrio sp. Ex25] gi|269966724|ref|ZP_06180801.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 40B] gi|91187655|gb|EAS73978.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] gi|151938531|gb|EDN57367.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25] gi|262340390|gb|ACY54184.1| cold shock transcriptional regulator CspA [Vibrio sp. Ex25] gi|269828647|gb|EEZ82904.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 40B] Length = 70 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI+ + GDDVF+H ++ S G LTEGQ V++ V+ G Sbjct: 6 TGSVKWFNETKGFGFISQD---NGGDDVFVHFRSIVSEGFKTLTEGQKVSF-VVEQGNKG 61 Query: 64 KYSAENLKL 72 +AE L Sbjct: 62 LQAAEVTAL 70 >gi|325263738|ref|ZP_08130471.1| conserved domain protein [Clostridium sp. D5] gi|324030776|gb|EGB92058.1| conserved domain protein [Clostridium sp. D5] Length = 65 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFI+ G+DVF+H S + G +L EGQ V +D + A G Sbjct: 2 TGTVKWFNNQKGYGFIS----DSEGNDVFVHYSGLMMDGFKSLEEGQAVEFDVT-DGAKG 56 Query: 64 KYSAENLKL 72 + KL Sbjct: 57 PQAVNVTKL 65 >gi|218902331|ref|YP_002450165.1| cold shock protein CspA [Bacillus cereus AH820] gi|218538225|gb|ACK90623.1| cold shock protein CspA [Bacillus cereus AH820] Length = 67 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+++ + + Sbjct: 1 MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETDGFKSLEEGQKVSFEIEEGN 56 Query: 61 ANGKYSAENLKLV 73 A+N+ + Sbjct: 57 RG--PQAKNVXKL 67 >gi|15644617|ref|NP_229670.1| cold shock protein [Thermotoga maritima MSB8] gi|148270057|ref|YP_001244517.1| cold-shock DNA-binding domain-containing protein [Thermotoga petrophila RKU-1] gi|170288741|ref|YP_001738979.1| cold-shock DNA-binding domain-containing protein [Thermotoga sp. RQ2] gi|281412062|ref|YP_003346141.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila RKU-10] gi|4982460|gb|AAD36936.1|AE001824_5 cold shock protein [Thermotoga maritima MSB8] gi|147735601|gb|ABQ46941.1| cold-shock DNA-binding protein family [Thermotoga petrophila RKU-1] gi|170176244|gb|ACB09296.1| cold-shock DNA-binding domain protein [Thermotoga sp. RQ2] gi|281373165|gb|ADA66727.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila RKU-10] Length = 66 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW++ KGYGFIT E+G+D+F+H SA+ G L E + V ++ + Sbjct: 2 RGTVKWFDSKKGYGFIT----MENGEDIFVHWSAIQMDGFKTLRENETVEFEVQKGTKG- 56 Query: 64 KYSAENLKLV 73 A N++ V Sbjct: 57 -PQAVNVRPV 65 >gi|160880077|ref|YP_001559045.1| cold-shock DNA-binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160428743|gb|ABX42306.1| cold-shock DNA-binding domain protein [Clostridium phytofermentans ISDg] Length = 66 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI+ E G+DVF+H S +A G L +GQ VT++ Sbjct: 1 MKKGTVKWFNSQKGFGFIS----DEQGNDVFVHYSGLAMDGFKTLEDGQSVTFEVTTGQR 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--LQAVNV 63 >gi|322434375|ref|YP_004216587.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321162102|gb|ADW67807.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 75 Score = 94.6 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++G +KW+N KG+GF+ E G DVF+H S++ G +L EG V +D +Q + Sbjct: 4 YKGEVKWFNNAKGFGFL----GREEGPDVFVHYSSIQLDGYKSLKEGDKVEFDVIQGEKG 59 Query: 63 GK 64 + Sbjct: 60 PQ 61 >gi|282863804|ref|ZP_06272862.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|282561505|gb|EFB67049.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] Length = 67 Score = 94.6 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MASGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELQEGQKVNFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|167586483|ref|ZP_02378871.1| cold-shock DNA-binding domain protein [Burkholderia ubonensis Bu] Length = 67 Score = 94.6 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIKMDGFKTLKENQRVSFD-VKVGP 56 Query: 62 NGKYSAE 68 GK +A Sbjct: 57 KGKQAAN 63 >gi|119775095|ref|YP_927835.1| cold-shock DNA-binding domain-containing protein [Shewanella amazonensis SB2B] gi|119767595|gb|ABM00166.1| cold-shock DNA-binding protein family [Shewanella amazonensis SB2B] Length = 70 Score = 94.6 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 H G++KW+N +KG+GF++ + + DVF+H A+ + G L EGQ V++ V+ Sbjct: 6 HTGTVKWFNDEKGFGFLSRDNDS----DVFVHYRAINTQGRRTLKEGQKVSFSLVEGQ-K 60 Query: 63 GKYSAENLKL 72 G +A L Sbjct: 61 GLLAANVTPL 70 >gi|90408760|ref|ZP_01216906.1| Cold shock protein [Psychromonas sp. CNPT3] gi|90310140|gb|EAS38279.1| Cold shock protein [Psychromonas sp. CNPT3] Length = 68 Score = 94.6 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E +G DVF H SA+AS G L EGQ V + Q Sbjct: 6 GTVKWFNESKGFGFIEQE----NGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQGQKG-- 59 Query: 65 YSAENLKLV 73 +AEN+ + Sbjct: 60 PNAENIVAI 68 >gi|260905033|ref|ZP_05913355.1| cold-shock DNA-binding domain protein [Brevibacterium linens BL2] Length = 67 Score = 94.6 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+ + DVF H SA+ S G L EGQ V +D Sbjct: 1 MATGTVKWFNSEKGFGFIQPD---DGSADVFTHFSAIESTGYRELAEGQNVEFDSEMGSK 57 Query: 62 NGKYSAENLKLV 73 A +++ + Sbjct: 58 G--LQATSVRPL 67 >gi|91229059|ref|ZP_01262885.1| cold shock-like protein CspD [Vibrio alginolyticus 12G01] gi|262394729|ref|YP_003286583.1| cold shock protein CspD [Vibrio sp. Ex25] gi|269967652|ref|ZP_06181702.1| cold shock-like protein CspD [Vibrio alginolyticus 40B] gi|91187452|gb|EAS73792.1| cold shock-like protein CspD [Vibrio alginolyticus 12G01] gi|262338323|gb|ACY52118.1| cold shock protein CspD [Vibrio sp. Ex25] gi|269827739|gb|EEZ82023.1| cold shock-like protein CspD [Vibrio alginolyticus 40B] Length = 72 Score = 94.6 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + E D+F H S + G L GQ V+Y+ + Sbjct: 1 MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYEI-EKGP 56 Query: 62 NGKYSAENLKL 72 G +++ + L Sbjct: 57 KGCHASSVVPL 67 >gi|322420109|ref|YP_004199332.1| cold-shock DNA-binding domain-containing protein [Geobacter sp. M18] gi|320126496|gb|ADW14056.1| cold-shock DNA-binding domain protein [Geobacter sp. M18] Length = 67 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI + +G+DVF+H SA+ G +L EG+ V++D N Sbjct: 1 MAQGKVKWFNDAKGFGFIEQD----NGEDVFVHFSAITGEGFKSLAEGESVSFDVT-NGP 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 KGLQAANVKKI 66 >gi|195648068|gb|ACG43502.1| glycine-rich protein 2b [Zea mays] Length = 208 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFITP+ + +D+F+H+S++ S G +L +G V Y + +G Sbjct: 8 GTVKWFNGTKGFGFITPD---DGSEDLFVHQSSIKSDGYRSLNDGDAVEYTVG-SGNDGX 63 Query: 65 YSAENLK 71 A ++ Sbjct: 64 AKALDVT 70 >gi|94311826|ref|YP_585036.1| cold-shock DNA-binding protein family protein [Cupriavidus metallidurans CH34] gi|93355678|gb|ABF09767.1| DNA-binding transcriptional repressor [Cupriavidus metallidurans CH34] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ E +F H SA+ +G L EGQ V ++ VQ Sbjct: 1 MASGIVKWFNDAKGFGFIKPDDGEEE---LFAHFSAIQMSGFKTLKEGQRVVFEIVQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQATNIQ 65 >gi|126668437|ref|ZP_01739394.1| Cold shock protein [Marinobacter sp. ELB17] gi|126627146|gb|EAZ97786.1| Cold shock protein [Marinobacter sp. ELB17] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI E G DVF+H SA+ + G L EGQ V + Sbjct: 6 TGHVKWFNEAKGFGFIAQE----DGSDVFVHFSAINADGFRTLAEGQKVQFTVTDGPKG- 60 Query: 64 KYSAENLKLV 73 AEN+ V Sbjct: 61 -PQAENVTPV 69 >gi|15616931|ref|NP_240144.1| cold shock-like protein CspC [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681685|ref|YP_002468071.1| cold shock-like protein CspC [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682240|ref|YP_002468624.1| cold shock-like protein CspC [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471376|ref|ZP_05635375.1| cold shock-like protein CspC [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11131708|sp|P57407|CSPC_BUCAI RecName: Full=Cold shock-like protein CspC; Short=CSP-C gi|25296148|pir||F84967 cold shock-like protein cspC [imported] - Buchnera sp. (strain APS) gi|10038996|dbj|BAB13030.1| cold shock-like protein cspC [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621973|gb|ACL30129.1| cold shock-like protein CspC [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624528|gb|ACL30683.1| cold shock-like protein CspC [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086059|gb|ADP66141.1| cold shock-like protein CspC [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086633|gb|ADP66714.1| cold shock-like protein CspC [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087216|gb|ADP67296.1| cold shock-like protein CspC [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087737|gb|ADP67816.1| cold shock-like protein CspC [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP ++ DVF+H S++ G LTEGQ V ++ Q+ G Sbjct: 5 KGQVKWFNESKGFGFITP---SDGSKDVFVHFSSIQGNGFKTLTEGQNVEFEI-QDGQKG 60 Query: 64 KYSAENL 70 +A N+ Sbjct: 61 P-AAVNV 66 >gi|86137410|ref|ZP_01055987.1| cold shock family protein [Roseobacter sp. MED193] gi|85825745|gb|EAQ45943.1| cold shock family protein [Roseobacter sp. MED193] Length = 72 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ G DVF+H S V +GL L + V Y+ + Sbjct: 1 MPSGTVKWFNTTKGFGFIEPDA---GGSDVFVHISQVERSGLTGLADNMKVDYELTEG-R 56 Query: 62 NGKYSAENLKLVPKS 76 +G+ A ++K + S Sbjct: 57 DGRQMAGDIKPLMSS 71 >gi|328542846|ref|YP_004302955.1| cold shock-like transcription regulator protein [polymorphum gilvum SL003B-26A1] gi|326412592|gb|ADZ69655.1| Putative cold shock-like transcription regulator protein [Polymorphum gilvum SL003B-26A1] Length = 250 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++K++ DKG+GFITP+ DVF+H SAV +G L GQ V+++ + Sbjct: 166 RQSGTVKFFKSDKGFGFITPD---NGEADVFVHISAVERSGFTTLDSGQRVSFETEPDRR 222 Query: 62 NGKYSAENLKLVPKSS 77 A NL+ + + Sbjct: 223 GKGPKAVNLQALEGEA 238 >gi|91226280|ref|ZP_01261120.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] gi|91189291|gb|EAS75570.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] Length = 70 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFITP+ G D+F+H ++ S G L+EGQ V++ Q + Sbjct: 6 TGSVKWFNESKGFGFITPD---NGGSDLFVHFKSIVSEGFKTLSEGQKVSFVVEQGNKG- 61 Query: 64 KYSAENLKLV 73 A+N+ LV Sbjct: 62 -PQADNVTLV 70 >gi|238782953|ref|ZP_04626981.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970] gi|332163162|ref|YP_004299739.1| cold shock-like protein cspG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|6073870|gb|AAB40923.2| major cold shock protein CSPA1 [Yersinia enterocolitica] gi|238716156|gb|EEQ08140.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970] gi|318603954|emb|CBY25452.1| cold shock protein CspG [Yersinia enterocolitica subsp. palearctica Y11] gi|325667392|gb|ADZ44036.1| cold shock-like protein cspG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862837|emb|CBX72978.1| cold shock-like protein cspB [Yersinia enterocolitica W22703] Length = 70 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVVAL 70 >gi|326445076|ref|ZP_08219810.1| cold shock protein [Streptomyces clavuligerus ATCC 27064] Length = 68 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A +G L EG LV +D Q Sbjct: 1 MASGTVKWFNAEKGFGFIQQDG---GGPDVFAHYSNIAGSGYRELHEGDLVNFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|114571412|ref|YP_758092.1| cold-shock DNA-binding protein family protein [Maricaulis maris MCS10] gi|114341874|gb|ABI67154.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10] Length = 70 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KG+GFITP+ E GDDVF+H SAV ++GL L++GQ V+++ + Sbjct: 1 MSTGVVKFFNQSKGFGFITPD---EGGDDVFVHISAVQASGLPGLSDGQKVSFETEPDRR 57 Query: 62 NGKYSAENLKL 72 A +L+L Sbjct: 58 GKGPKAVDLQL 68 >gi|78221460|ref|YP_383207.1| cold-shock DNA-binding protein family protein [Geobacter metallireducens GS-15] gi|78192715|gb|ABB30482.1| cold-shock DNA-binding protein family [Geobacter metallireducens GS-15] Length = 66 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ + +G+DVF H SA+A G +LTEG VT++ + Sbjct: 1 MVNGTVKWFNDSKGFGFLEQD----NGEDVFCHFSAIAGDGFKSLTEGDRVTFEVTKG-P 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGLQAANVTRV 66 >gi|307295485|ref|ZP_07575321.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306878524|gb|EFN09744.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 68 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKGYGFI PE + G+D F+H SAV AG+ L + Q ++Y+ V+ D Sbjct: 1 MPIGTVKFFNADKGYGFIAPE---DGGNDSFVHISAVERAGMVTLQKDQRLSYE-VEMDR 56 Query: 62 NGKYSAENLK 71 GK SA NL+ Sbjct: 57 RGKQSAVNLQ 66 >gi|302800247|ref|XP_002981881.1| hypothetical protein SELMODRAFT_154869 [Selaginella moellendorffii] gi|300150323|gb|EFJ16974.1| hypothetical protein SELMODRAFT_154869 [Selaginella moellendorffii] Length = 182 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ + +++F+H+SA+ + G +L EG++V + Q + Sbjct: 10 TGKVKWFNVTKGFGFITPD---DGSEELFVHQSAIFAEGFRSLREGEIVEFSVEQGEDQR 66 Query: 64 KYSAEN 69 +A+ Sbjct: 67 MRAADV 72 >gi|15596356|ref|NP_249850.1| cold-shock protein [Pseudomonas aeruginosa PAO1] gi|116049091|ref|YP_792107.1| cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14] gi|152986008|ref|YP_001349574.1| cold-shock protein [Pseudomonas aeruginosa PA7] gi|218892877|ref|YP_002441746.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58] gi|254234293|ref|ZP_04927616.1| hypothetical protein PACG_00132 [Pseudomonas aeruginosa C3719] gi|254239529|ref|ZP_04932851.1| hypothetical protein PA2G_00143 [Pseudomonas aeruginosa 2192] gi|296390471|ref|ZP_06879946.1| putative cold-shock protein [Pseudomonas aeruginosa PAb1] gi|313106131|ref|ZP_07792386.1| putative cold-shock protein [Pseudomonas aeruginosa 39016] gi|9947082|gb|AAG04548.1|AE004546_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1] gi|115584312|gb|ABJ10327.1| probable cold-shock protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126166224|gb|EAZ51735.1| hypothetical protein PACG_00132 [Pseudomonas aeruginosa C3719] gi|126192907|gb|EAZ56970.1| hypothetical protein PA2G_00143 [Pseudomonas aeruginosa 2192] gi|150961166|gb|ABR83191.1| probable cold-shock protein [Pseudomonas aeruginosa PA7] gi|218773105|emb|CAW28917.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58] gi|310878888|gb|EFQ37482.1| putative cold-shock protein [Pseudomonas aeruginosa 39016] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFI + SG DVF+H A+ G +L EGQ V + +Q Sbjct: 4 REVGTVKWFNDAKGYGFIQRD----SGPDVFVHYRAIRGEGHRSLVEGQKVEFSVIQGQK 59 Query: 62 NGKYSAENLKLV 73 AE++ V Sbjct: 60 G--LQAEDVSKV 69 >gi|116696141|ref|YP_841717.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] gi|113530640|emb|CAJ96987.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] Length = 67 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ E G+D+F H SA+ G +L EGQ V Y Sbjct: 1 METGTVKWFNDAKGFGFITPD---EGGNDLFAHFSAIEGNGFKSLKEGQKVRY-VKAMGQ 56 Query: 62 NGKYS 66 G+ + Sbjct: 57 KGEQA 61 >gi|254363164|ref|ZP_04979213.1| cold shock protein [Mannheimia haemolytica PHL213] gi|261493957|ref|ZP_05990465.1| cold shock protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494758|ref|ZP_05991237.1| cold shock protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|153095058|gb|EDN75609.1| cold shock protein [Mannheimia haemolytica PHL213] gi|261309575|gb|EEY10799.1| cold shock protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310389|gb|EEY11584.1| cold shock protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 70 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KG+GFITP+ + G DVF+H SA+ + G L +G V ++ ++ Sbjct: 5 TGTVKWFNATKGFGFITPD---QGGKDVFVHFSAIEANGGYRTLEDGAKVQFEIQDSERG 61 Query: 63 GKYSAENLKLV 73 SA N+K + Sbjct: 62 --ASAVNVKTI 70 >gi|51597878|ref|YP_072069.1| major cold shock protein Cspa2 [Yersinia pseudotuberculosis IP 32953] gi|186897074|ref|YP_001874186.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|51591160|emb|CAH22825.1| major cold shock protein Cspa2 [Yersinia pseudotuberculosis IP 32953] gi|186700100|gb|ACC90729.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] Length = 70 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP + G DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFDAGKGFGFITP---ADGGKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PAAVNVIAL 70 >gi|119475680|ref|ZP_01616033.1| cold-shock DNA-binding domain protein [marine gamma proteobacterium HTCC2143] gi|119451883|gb|EAW33116.1| cold-shock DNA-binding domain protein [marine gamma proteobacterium HTCC2143] Length = 68 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF H SA+ S+G L EGQ V + Sbjct: 5 TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAIVSSGFKTLAEGQRVEFTVTAGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 60 -PQAENIVAI 68 >gi|28900407|ref|NP_800062.1| cold shock DNA-binding domain-containing protein [Vibrio parahaemolyticus RIMD 2210633] gi|91227011|ref|ZP_01261548.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 12G01] gi|153837377|ref|ZP_01990044.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus AQ3810] gi|254228898|ref|ZP_04922320.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25] gi|260362063|ref|ZP_05775059.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus K5030] gi|260877358|ref|ZP_05889713.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AN-5034] gi|260898395|ref|ZP_05906891.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus Peru-466] gi|260902872|ref|ZP_05911267.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AQ4037] gi|262396755|ref|YP_003288608.1| cold shock protein CspE [Vibrio sp. Ex25] gi|269968331|ref|ZP_06182351.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 40B] gi|28808718|dbj|BAC61895.1| cold shock DNA-binding domain protein [Vibrio parahaemolyticus RIMD 2210633] gi|91188813|gb|EAS75099.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 12G01] gi|149749292|gb|EDM60071.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus AQ3810] gi|151938575|gb|EDN57411.1| Cold-shock DNA-binding domain, putative [Vibrio sp. Ex25] gi|262340349|gb|ACY54143.1| cold shock protein CspE [Vibrio sp. Ex25] gi|269827049|gb|EEZ81363.1| cold shock DNA-binding domain protein [Vibrio alginolyticus 40B] gi|308085077|gb|EFO34772.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus Peru-466] gi|308090568|gb|EFO40263.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AN-5034] gi|308107799|gb|EFO45339.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AQ4037] gi|308113783|gb|EFO51323.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus K5030] gi|328470361|gb|EGF41272.1| cold shock protein CspE [Vibrio parahaemolyticus 10329] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H SA+ G L EGQ V + Q Sbjct: 6 TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAITGDGFRTLVEGQKVEFVISQGQKG- 60 Query: 64 KYSAENLKLV 73 AE +K++ Sbjct: 61 -PQAEQIKVL 69 >gi|310778745|ref|YP_003967078.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] gi|309748068|gb|ADO82730.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] Length = 66 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFIT +E G DVF H S + G +L EG+ VT++ + Sbjct: 1 MANGTVKWFNAEKGFGFIT----SEDGTDVFAHFSEIQKDGFKSLEEGEQVTFEITKGQK 56 Query: 62 NGKYSAENLKLV 73 A N+K V Sbjct: 57 G--PQASNIKTV 66 >gi|228990213|ref|ZP_04150183.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] gi|228996304|ref|ZP_04155949.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|229003971|ref|ZP_04161777.1| Cold shock protein cspB [Bacillus mycoides Rock1-4] gi|228757340|gb|EEM06579.1| Cold shock protein cspB [Bacillus mycoides Rock1-4] gi|228763496|gb|EEM12398.1| Cold shock protein cspB [Bacillus mycoides Rock3-17] gi|228769576|gb|EEM18169.1| Cold shock protein cspB [Bacillus pseudomycoides DSM 12442] Length = 67 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G+DVF+H SA+ + G +L EG+ V+++ ++ Sbjct: 1 MTVTGQVKWFNNEKGFGFIE----VPGGNDVFVHFSAITTEGFKSLEEGEKVSFEI-EDG 55 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 56 NRGPQAKNVVKL 67 >gi|327480906|gb|AEA84216.1| cold-shock protein CspD [Pseudomonas stutzeri DSM 4166] Length = 87 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G E D+F H SA+ G L GQ V ++ +Q Sbjct: 1 MLSGKVKWFNNAKGYGFIVADGGDE---DLFAHYSAIQMEGYRTLKAGQAVMFNILQGPK 57 Query: 62 N------GKYSAENLKLVPKSSN 78 A + P ++ Sbjct: 58 GLHATDIRPQQAVSEATTPAAAQ 80 >gi|307825897|ref|ZP_07656112.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307733016|gb|EFO03878.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI E G DVF+H SA+ AG L EGQ VT + Q Sbjct: 7 GTVKWFNDEKGFGFIEQE----GGKDVFVHHSAINGAGRKTLREGQKVTMEVTQGQKG-- 60 Query: 65 YSAENLK 71 AEN+ Sbjct: 61 PQAENVT 67 >gi|193875878|gb|ACF24575.1| glycine-rich nucleic acid binding protein [Gymnochlora stellata] Length = 290 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G+ KW+N KGYGFI P E DD+F+H++A+ + G +L EG+ V +D V+ DA Sbjct: 23 RQSGTCKWFNTVKGYGFILP---QEGKDDIFVHQTAIKAVGFRSLAEGEQVEFD-VEVDA 78 Query: 62 NGKYSAENLK 71 G+ A N+ Sbjct: 79 TGRKKARNVT 88 >gi|148652425|ref|YP_001279518.1| cold-shock DNA-binding domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571509|gb|ABQ93568.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1] gi|332977982|gb|EGK14726.1| cold shock protein CspA [Psychrobacter sp. 1501(2011)] Length = 71 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI + + G DVF H SA+ +G L EGQ VT+ Q Sbjct: 6 QGTVKWFNEAKGFGFIAQD---DGGQDVFAHYSAIQGSGFKTLAEGQKVTFVLGQGQKGP 62 Query: 64 K 64 + Sbjct: 63 Q 63 >gi|66046414|ref|YP_236255.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|63257121|gb|AAY38217.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|330972895|gb|EGH72961.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris str. M302273PT] Length = 92 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI EG ++ +D+F+H SA+ G L GQ V ++ Sbjct: 1 MIEGKVKWFNNAKGFGFINAEGKSD--EDLFVHFSAIEMDGYKTLKAGQKVRFEVAHGPK 58 Query: 62 N 62 Sbjct: 59 G 59 >gi|333025177|ref|ZP_08453241.1| putative cold shock protein [Streptomyces sp. Tu6071] gi|332745029|gb|EGJ75470.1| putative cold shock protein [Streptomyces sp. Tu6071] Length = 62 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +KG+GFI EG G DVF+H SA+ + G +L E Q VT+D Q Sbjct: 1 MKWFNAEKGFGFIAQEG---GGPDVFVHYSAINANGFRSLEENQAVTFDVTQGPKG--PQ 55 Query: 67 AENLKLV 73 AEN+ + Sbjct: 56 AENVSAL 62 >gi|229592287|ref|YP_002874406.1| major cold shock protein [Pseudomonas fluorescens SBW25] gi|229364153|emb|CAY51796.1| major cold shock protein [Pseudomonas fluorescens SBW25] Length = 70 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59 Query: 62 N 62 Sbjct: 60 G 60 >gi|313498101|gb|ADR59467.1| Cold-shock DNA-binding domain-containing protein [Pseudomonas putida BIRD-1] Length = 88 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI EG ++ D+F H SA+ G L GQ V +D VQ Sbjct: 1 MASGKVKWFNNAKGYGFINEEGKSD---DLFAHYSAIRMDGYKTLKAGQAVIFDIVQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|78486201|ref|YP_392126.1| cold-shock DNA-binding domain-containing protein [Thiomicrospira crunogena XCL-2] gi|78364487|gb|ABB42452.1| cold-shock DNA-binding protein family [Thiomicrospira crunogena XCL-2] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI E G DVF+H SA+ AG +L EGQ VT + Q Sbjct: 6 TGTVKWFNDEKGFGFIEQE----GGKDVFVHFSAINGAGRKSLMEGQSVTMEVTQGQKG- 60 Query: 64 KYSAENLK 71 AEN+ Sbjct: 61 -PQAENVT 67 >gi|330983211|gb|EGH81314.1| cold shock protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 67 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V++ + Sbjct: 2 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQK 57 Query: 62 NGKYSAENLKLV 73 AE ++++ Sbjct: 58 G--MQAEEVQVI 67 >gi|326794422|ref|YP_004312242.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] gi|326545186|gb|ADZ90406.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] Length = 154 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GF+T + GDDVF+H A+ G L EGQ V + + + Sbjct: 90 GTVKWFNSSKGFGFLT----LDDGDDVFVHYRAIRGRGRRFLVEGQKVRFYVTEGEKG-- 143 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 144 KQAENVSII 152 >gi|330722048|gb|EGG99970.1| Cold shock protein CspA [gamma proteobacterium IMCC2047] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFI G DVF+H A+ G L +GQ V Y V++ Sbjct: 6 TGTVKWFNNAKGYGFIEHH----DGQDVFVHYRAIRGEGYRKLNDGQEVEYSIVESQKG- 60 Query: 64 KYSAENLKLV 73 AE++ V Sbjct: 61 -LQAEDVTPV 69 >gi|152995681|ref|YP_001340516.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150836605|gb|ABR70581.1| putative cold-shock DNA-binding domain protein [Marinomonas sp. MWYL1] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E SG DVF H SA+AS+G L EGQ V + V G Sbjct: 6 KGTVKWFNEIKGFGFIEQE----SGPDVFAHFSAIASSGFKTLAEGQQVEF-VVTAGQKG 60 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 61 PQ-AENITVL 69 >gi|84386379|ref|ZP_00989407.1| putative Cold shock-like protein [Vibrio splendidus 12B01] gi|86146530|ref|ZP_01064852.1| putative Cold shock-like protein [Vibrio sp. MED222] gi|218708238|ref|YP_002415859.1| putative cold shock protein [Vibrio splendidus LGP32] gi|84378803|gb|EAP95658.1| putative Cold shock-like protein [Vibrio splendidus 12B01] gi|85835587|gb|EAQ53723.1| putative Cold shock-like protein [Vibrio sp. MED222] gi|218321257|emb|CAV17207.1| putative cold shock protein [Vibrio splendidus LGP32] Length = 70 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KG+GF+T + G DVF+H A+AS G L EGQ V+++ Q G Sbjct: 6 NGVVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 LQAANVVAL 70 >gi|257063443|ref|YP_003143115.1| cold-shock DNA-binding protein family [Slackia heliotrinireducens DSM 20476] gi|256791096|gb|ACV21766.1| cold-shock DNA-binding protein family [Slackia heliotrinireducens DSM 20476] Length = 67 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++P+KGYGFI+ G+++F+H S + G L EG VT++ + A Sbjct: 1 MAEGTVKWFSPEKGYGFISQ----ADGENLFVHFSEIQMDGYKTLEEGAKVTFEVTEG-A 55 Query: 62 NGKYSAENL 70 NGK A N+ Sbjct: 56 NGKKQASNV 64 >gi|109898691|ref|YP_661946.1| cold-shock DNA-binding domain-containing protein [Pseudoalteromonas atlantica T6c] gi|109700972|gb|ABG40892.1| cold-shock DNA-binding protein family [Pseudoalteromonas atlantica T6c] Length = 84 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI PE + GDD+F H S + G +L GQ V YD Q Sbjct: 13 MAVGKVKWFNNAKGFGFIVPE---DGGDDIFAHYSTIQMEGYRSLKAGQEVKYDVQQGPK 69 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 70 G--LHAENI 76 >gi|157158051|ref|YP_001462848.1| cold shock DNA-binding protein [Escherichia coli E24377A] gi|331668012|ref|ZP_08368867.1| conserved domain protein [Escherichia coli TA271] gi|331673146|ref|ZP_08373914.1| conserved domain protein [Escherichia coli TA280] gi|157080081|gb|ABV19789.1| cold shock DNA-binding protein [Escherichia coli E24377A] gi|222033318|emb|CAP76058.1| Cold shock-like protein cspB [Escherichia coli LF82] gi|331064754|gb|EGI36658.1| conserved domain protein [Escherichia coli TA271] gi|331069344|gb|EGI40731.1| conserved domain protein [Escherichia coli TA280] Length = 71 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + DVF+H SA+ + L EGQ VT+ ++ A G Sbjct: 6 TGLVKWFNADKGFGFISP---VDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSI-ESGAKG 61 Query: 64 KYSAENL 70 +A N+ Sbjct: 62 P-AAVNV 67 >gi|33152145|ref|NP_873498.1| cold shock-like protein CspC [Haemophilus ducreyi 35000HP] gi|33148367|gb|AAP95887.1| cold shock-like protein CspC [Haemophilus ducreyi 35000HP] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ G D+F+H S + + L EG V ++ +D Sbjct: 5 TGIVKWFNSTKGFGFITPDL---GGKDIFVHFSGIIGSNFRTLEEGAKVEFEVQDSDRG- 60 Query: 64 KYSAENLKLV 73 SA N+K + Sbjct: 61 -PSAVNVKAL 69 >gi|222086272|ref|YP_002544804.1| cold shock protein [Agrobacterium radiobacter K84] gi|221723720|gb|ACM26876.1| cold shock protein [Agrobacterium radiobacter K84] Length = 70 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +K++N DKG+GFITP+G DVF+H SA+ ++G+ +L EGQ VT+D + Sbjct: 1 MATKGIVKFFNQDKGFGFITPDG---GAKDVFVHISALQASGIQSLREGQQVTFDTEPDR 57 Query: 61 ANGKYSAENLK 71 A N++ Sbjct: 58 MGKGPKAVNIQ 68 >gi|119945819|ref|YP_943499.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119864423|gb|ABM03900.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q Sbjct: 6 QGTVKWFNEAKGFGFIEQ----ASGPDVFAHFSAIASEGFKTLAEGQKVEFSVSQGQKG- 60 Query: 64 KYSAENL 70 A+N+ Sbjct: 61 -PQADNI 66 >gi|39997003|ref|NP_952954.1| cold shock domain-contain protein [Geobacter sulfurreducens PCA] gi|39983891|gb|AAR35281.1| cold shock domain family protein [Geobacter sulfurreducens PCA] gi|298506020|gb|ADI84743.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens KN400] Length = 66 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI + +G+DVF+H SA+ G +L EG+ V++D V N Sbjct: 1 MAIGRVKWFNDAKGFGFIEQD----NGEDVFVHFSAIQQDGFKSLAEGEQVSFDVV-NGP 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 KGLQAANVKK 65 >gi|15602520|ref|NP_245592.1| MsmB [Pasteurella multocida subsp. multocida str. Pm70] gi|12720931|gb|AAK02739.1| MsmB [Pasteurella multocida subsp. multocida str. Pm70] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFITP + G D+F+H S + + L EG V Y VQ+ G Sbjct: 5 NGTVKWFNSDKGFGFITP---ADGGKDLFVHFSGIIGSNYRTLNEGDRVEYS-VQDSQRG 60 Query: 64 KYSAENLKLV 73 SA ++K + Sbjct: 61 P-SAIDVKAI 69 >gi|163857153|ref|YP_001631451.1| cold shock-like protein [Bordetella petrii DSM 12804] gi|163260881|emb|CAP43183.1| cold shock-like protein [Bordetella petrii] Length = 67 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N DKG+GFI PE G D+F H S + S G +L E Q V+Y VQ Sbjct: 1 METGIVKWFNADKGFGFIMPE---NGGKDLFAHFSGIESEGYKSLEENQRVSY--VQTQG 55 Query: 62 NGKYSAENLKLV 73 A ++++ Sbjct: 56 AKGPQATKIRVL 67 >gi|78065585|ref|YP_368354.1| cold-shock DNA-binding protein family protein [Burkholderia sp. 383] gi|77966330|gb|ABB07710.1| cold-shock DNA-binding protein family [Burkholderia sp. 383] Length = 67 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V++D V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIKMDGFKTLKENQRVSFD-VKVGP 56 Query: 62 NGKYSAENLKLV 73 GK +A N++ V Sbjct: 57 KGKQAA-NIQAV 67 >gi|223470486|gb|ACM90505.1| cold shock protein [Psychromonas arctica] Length = 68 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q Sbjct: 5 QGTVKWFNESKGFGFIEQ----ASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGPKG- 59 Query: 64 KYSAENL 70 AEN+ Sbjct: 60 -PQAENI 65 >gi|71735994|ref|YP_273427.1| cold shock domain-contain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487383|ref|ZP_05641424.1| cold shock domain-contain protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289623813|ref|ZP_06456767.1| cold shock domain-contain protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649164|ref|ZP_06480507.1| cold shock domain-contain protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298485821|ref|ZP_07003899.1| Cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71556547|gb|AAZ35758.1| cold shock domain family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159645|gb|EFI00688.1| Cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322886|gb|EFW78977.1| cold shock domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329805|gb|EFW85793.1| cold shock domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330867848|gb|EGH02557.1| cold shock domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330989711|gb|EGH87814.1| cold shock domain-contain protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 70 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59 Query: 62 NGKYSAENLK 71 A+ ++ Sbjct: 60 G--MQADEVQ 67 >gi|332306352|ref|YP_004434203.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173681|gb|AEE22935.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 72 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI PE + GDD+F H S + G +L GQ V YD Q Sbjct: 1 MAVGKVKWFNNAKGFGFIVPE---DGGDDIFAHYSTIQMEGYRSLKAGQEVKYDVQQGPK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--LHAENI 64 >gi|317492863|ref|ZP_07951287.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918985|gb|EFV40320.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 70 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+PE + DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFDAGKGFGFISPE---DGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVVAL 70 >gi|238898015|ref|YP_002923695.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465773|gb|ACQ67547.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFITP+ ++ DVF+H SA+ +G L EGQ V ++ Sbjct: 5 KGKVKWFNESKGFGFITPD---DNSKDVFVHFSAIQDSGFKTLAEGQGVEFEIADGQKG- 60 Query: 64 KYSAENLKLV 73 SA ++ + Sbjct: 61 -PSAVDVNKI 69 >gi|70731986|ref|YP_261728.1| temperature acclimation protein b, fragment-like protein [Pseudomonas fluorescens Pf-5] gi|68346285|gb|AAY93891.1| temperature acclimation protein b [Pseudomonas fluorescens Pf-5] Length = 70 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59 Query: 62 NGKYSAENLK 71 A+ ++ Sbjct: 60 G--MQADEVQ 67 >gi|15965657|ref|NP_386010.1| putative cold shock-like transcription regulator protein [Sinorhizobium meliloti 1021] gi|150396829|ref|YP_001327296.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|307315974|ref|ZP_07595463.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307321238|ref|ZP_07600640.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|15074838|emb|CAC46483.1| Cold shock protein [Sinorhizobium meliloti 1021] gi|150028344|gb|ABR60461.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] gi|306893140|gb|EFN23924.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306898377|gb|EFN29075.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 70 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +K++N DKG+GFITPEG DVF+H +AV +AGL L +GQ V++D + Sbjct: 1 MATKGIVKFFNQDKGFGFITPEG---GSKDVFVHITAVQAAGLTTLNDGQEVSFDTEPDR 57 Query: 61 ANGKYSAENLKLV 73 A NL+ + Sbjct: 58 MGKGPKAVNLQAL 70 >gi|322515089|ref|ZP_08068096.1| CspA family cold shock transcriptional regulator [Actinobacillus ureae ATCC 25976] gi|322118895|gb|EFX91077.1| CspA family cold shock transcriptional regulator [Actinobacillus ureae ATCC 25976] Length = 69 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ + G D+F+H S + + L EG V ++ +D Sbjct: 5 TGIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFEVQDSDRG- 60 Query: 64 KYSAENLKLV 73 SA N+K + Sbjct: 61 -PSAVNVKAL 69 >gi|119945641|ref|YP_943321.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119864245|gb|ABM03722.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW+N KG+GFI SG DVF+H SA+AS G L EGQ V + Q Sbjct: 5 EQGTVKWFNEAKGFGFIEQ----ASGPDVFVHFSAIASEGFKTLAEGQKVEFTVSQGPKG 60 Query: 63 GK 64 + Sbjct: 61 PQ 62 >gi|162447160|ref|YP_001620292.1| DNA-binding cold shock protein [Acholeplasma laidlawii PG-8A] gi|161985267|gb|ABX80916.1| cold shock protein, DNA-binding [Acholeplasma laidlawii PG-8A] Length = 65 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KGYGFIT ++G DVF+H SA+ + G +L EG V ++ ++ G Sbjct: 2 KGTVKWFDAGKGYGFIT----ADNGKDVFVHYSAIQTDGYKSLAEGDQVEFEI-KSGDRG 56 Query: 64 KYSAENLKL 72 +A K+ Sbjct: 57 DQAANVSKI 65 >gi|289679173|ref|ZP_06500063.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae FF5] gi|330900613|gb|EGH32032.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. japonica str. M301072PT] Length = 91 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI EG+ E D+F H SA+ G L GQ V ++ Q Sbjct: 1 MIEGKVKWFNNAKGFGFINAEGNDE---DLFAHFSAIEMDGYKTLKAGQKVRFEVAQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|312114304|ref|YP_004011900.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219433|gb|ADP70801.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 71 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N KG+GFITP+ E G DVF+H SAV +G+ L EG VTY+ + Sbjct: 1 MRQTGTVKFFNQAKGFGFITPD---EGGKDVFVHISAVERSGVGMLDEGMRVTYETQPDP 57 Query: 61 ANGKYSAENLK 71 A NL+ Sbjct: 58 KGKGPKAVNLE 68 >gi|260773863|ref|ZP_05882778.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14] gi|260610824|gb|EEX36028.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14] Length = 70 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + G DVF+H +++ S G L EGQ V+++ V+ G Sbjct: 6 TGTVKWFNETKGFGFISQD---NGGKDVFVHFNSIVSDGFKTLAEGQKVSFN-VEEGKKG 61 Query: 64 KYSAENLKL 72 + E L Sbjct: 62 PQATEVTPL 70 >gi|226307843|ref|YP_002767803.1| cold shock protein [Rhodococcus erythropolis PR4] gi|229494927|ref|ZP_04388678.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|226186960|dbj|BAH35064.1| probable cold shock protein [Rhodococcus erythropolis PR4] gi|229318151|gb|EEN84021.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 67 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI PE + DVF+H S + S G L E Q V ++ Q + Sbjct: 1 MAEGIVKWFNSEKGFGFIAPE---DGSADVFVHYSEIQSGGFRTLEENQRVAFEIGQGNK 57 Query: 62 NGKYSAENLKLV 73 A + +V Sbjct: 58 G--PQATGVTIV 67 >gi|322434962|ref|YP_004217174.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321162689|gb|ADW68394.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI+ ++G+DVF H SA+ S+G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFIS----RQNGEDVFAHYSAITSSGFKSLQEGQAVQFNVVKGPK 56 Query: 62 NGKYSAENLKLV 73 + A +++ + Sbjct: 57 G--WQAADIQPL 66 >gi|281336080|gb|ADA62629.1| Cold shock protein CspC [Staphylococcus epidermidis] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW++ DKG+GFI + +G+DVF+H S +A G +L EGQ V +D V+ Sbjct: 1 MNNGTVKWFHADKGFGFIERD----NGNDVFVHYSVIAGEGYKSLEEGQNVDFDIVEGQR 56 Query: 62 NGKYSAENLKLV 73 A N+ ++ Sbjct: 57 G--EQATNVVVM 66 >gi|222149268|ref|YP_002550225.1| cold shock protein [Agrobacterium vitis S4] gi|221736252|gb|ACM37215.1| cold shock protein [Agrobacterium vitis S4] Length = 67 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKG+GFITPE G DVF+H S++ +L EG V+++ Q+ Sbjct: 1 MPTGTVKFFNDDKGFGFITPE---NGGTDVFVHVSSLQRG--DSLREGDKVSFEIGQDRK 55 Query: 62 NGKYSAENLKLV 73 GK AEN+ ++ Sbjct: 56 TGKSKAENVSVL 67 >gi|254283369|ref|ZP_04958337.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR51-B] gi|219679572|gb|EED35921.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR51-B] Length = 69 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI +SG DVF H SA+ +G L EGQ V + Q Sbjct: 6 TGTVKWFNESKGFGFIEQ----KSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+ V Sbjct: 61 -PQAENIVAV 69 >gi|213968381|ref|ZP_03396525.1| cold shock domain family protein [Pseudomonas syringae pv. tomato T1] gi|301384647|ref|ZP_07233065.1| cold shock domain family protein [Pseudomonas syringae pv. tomato Max13] gi|302058900|ref|ZP_07250441.1| cold shock domain family protein [Pseudomonas syringae pv. tomato K40] gi|302133013|ref|ZP_07259003.1| cold shock domain family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927019|gb|EEB60570.1| cold shock domain family protein [Pseudomonas syringae pv. tomato T1] Length = 70 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ +G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGSGFKSLKEGQKVTFIAVQGQK 59 Query: 62 N 62 Sbjct: 60 G 60 >gi|160901501|ref|YP_001567082.1| cold-shock DNA-binding domain-containing protein [Petrotoga mobilis SJ95] gi|160359145|gb|ABX30759.1| cold-shock DNA-binding domain protein [Petrotoga mobilis SJ95] Length = 65 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++ KGYGFIT E G+DVF+H SAV G L E Q V ++ V+ D Sbjct: 2 KGKVKWFDSKKGYGFIT----GEDGNDVFVHFSAVQMDGYRKLEEDQEVEFEVVEGDKG- 56 Query: 64 KYSAENLKLV 73 A N++ + Sbjct: 57 -PQASNVRPL 65 >gi|123444001|ref|YP_001007971.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|123444002|ref|YP_001007972.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090962|emb|CAL13844.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090963|emb|CAL13845.1| major cold shock protein CspA1 [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 70 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + ++ A G Sbjct: 6 TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ESGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVVAL 70 >gi|294470714|gb|ADE80749.1| cold shock domain protein 2 [Eutrema salsugineum] Length = 201 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 46/70 (65%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 RG++KW++ KG+GFITP+ ++GDD+F+H+S++ S G +L + V ++ V+ D Sbjct: 11 RRRGTVKWFDTQKGFGFITPD---DAGDDLFVHQSSIRSDGFRSLAADESVEFE-VEMDN 66 Query: 62 NGKYSAENLK 71 NG+ A + Sbjct: 67 NGRPKAIEVS 76 >gi|257455324|ref|ZP_05620559.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] gi|257447286|gb|EEV22294.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] Length = 70 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI + G DVF H SA+ +G L EGQ V++ Q Sbjct: 6 TGTVKWFNESKGFGFIAQD---NGGQDVFAHYSAIQGSGFKTLKEGQRVSFVLSQGQKG- 61 Query: 64 KYSAENLK 71 AE ++ Sbjct: 62 -PQAEQIE 68 >gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium HTCC2255] gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium HTCC2255] Length = 531 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 3/74 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ WYNP KG GFI P+ + GDDVF+H SA+ ++GL + EG ++TY+ + ++ Sbjct: 1 MLTGTVIWYNPVKGLGFINPD---QGGDDVFVHMSALKASGLKVVKEGDMLTYELLLDEK 57 Query: 62 NGKYSAENLKLVPK 75 GK +A N+ ++ K Sbjct: 58 TGKKAASNVTILKK 71 >gi|255523658|ref|ZP_05390625.1| cold-shock DNA-binding domain protein [Clostridium carboxidivorans P7] gi|255512713|gb|EET88986.1| cold-shock DNA-binding domain protein [Clostridium carboxidivorans P7] Length = 65 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT E G DVF+H S + S G +L EGQ V++D V+ Sbjct: 2 NGTVKWFNGEKGFGFIT----GEDGKDVFVHFSQIKSEGYKSLEEGQEVSFDAVKGPKG- 56 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 57 -LQAENVTIL 65 >gi|225871753|ref|YP_002753207.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] gi|225793287|gb|ACO33377.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GF++ +G+DVF+H SA+ S G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFLS----RPNGEDVFVHFSAITSNGFRSLQEGQAVQFNVVKGAK 56 Query: 62 NGKYSAENLKLV 73 + AEN++ + Sbjct: 57 G--WQAENVQAL 66 >gi|77918392|ref|YP_356207.1| cold shock proteins [Pelobacter carbinolicus DSM 2380] gi|77544475|gb|ABA88037.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus DSM 2380] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + +G DVF+H S + G +L EG V ++ Q Sbjct: 1 MAEGTVKWFNDAKGFGFIEQD----NGPDVFVHFSEIQGEGFKSLAEGDRVVFEVTQGQK 56 Query: 62 NGKYSAENLKLV 73 + N++ V Sbjct: 57 G--PQSVNVRRV 66 >gi|330981383|gb|EGH79486.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 91 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI EG+ E D+F H SA+ G L GQ V ++ Q Sbjct: 1 MIEGKVKWFNNAKGFGFINAEGNNE---DLFAHFSAIEMDGYKTLKAGQKVRFEVAQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|83647927|ref|YP_436362.1| cold shock protein [Hahella chejuensis KCTC 2396] gi|83635970|gb|ABC31937.1| Cold shock protein [Hahella chejuensis KCTC 2396] Length = 158 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+NP+KG+GFIT E GDD+F+H ++ G +L +GQ V + V+ D Sbjct: 92 RESGIVKWFNPNKGFGFITRE----GGDDIFVHFRSIRGRGHRSLRQGQKVRFRTVEGDK 147 Query: 62 NGKYSAENLKLV 73 AE++ V Sbjct: 148 G--LQAEDVSPV 157 >gi|71725901|gb|AAZ39069.1| cold shock protein [Exiguobacterium undae] Length = 69 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 5/65 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N ++G+GFI E SGDDVF+H SA+ + G +L EGQ V+++ V+ G Sbjct: 8 GTVKWFNLEEGFGFIERE----SGDDVFVHFSAIQTDGFKSLDEGQEVSFE-VEEGQRGP 62 Query: 65 YSAEN 69 +A Sbjct: 63 QAANV 67 >gi|15600936|ref|NP_232566.1| cold shock transcriptional regulator CspA [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587988|ref|ZP_01677741.1| cold shock transcriptional regulator CspA [Vibrio cholerae 2740-80] gi|121728193|ref|ZP_01681227.1| cold shock transcriptional regulator CspA [Vibrio cholerae V52] gi|147671768|ref|YP_001215947.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395] gi|153214405|ref|ZP_01949376.1| cold shock transcriptional regulator CspA [Vibrio cholerae 1587] gi|153802385|ref|ZP_01956971.1| cold shock transcriptional regulator CspA [Vibrio cholerae MZO-3] gi|153816822|ref|ZP_01969489.1| cold shock transcriptional regulator CspA [Vibrio cholerae NCTC 8457] gi|153825020|ref|ZP_01977687.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2] gi|153830344|ref|ZP_01983011.1| cold shock transcriptional regulator CspA [Vibrio cholerae 623-39] gi|227811792|ref|YP_002811802.1| cold shock transcriptional regulator CspA [Vibrio cholerae M66-2] gi|229506667|ref|ZP_04396176.1| cold shock protein CspG [Vibrio cholerae BX 330286] gi|229510535|ref|ZP_04400015.1| cold shock protein CspG [Vibrio cholerae B33] gi|229514666|ref|ZP_04404127.1| cold shock protein CspG [Vibrio cholerae TMA 21] gi|229517333|ref|ZP_04406778.1| cold shock protein CspG [Vibrio cholerae RC9] gi|229522836|ref|ZP_04412250.1| cold shock protein CspG [Vibrio cholerae TM 11079-80] gi|229527853|ref|ZP_04417244.1| cold shock protein CspG [Vibrio cholerae 12129(1)] gi|229605144|ref|YP_002875848.1| cold shock protein CspG [Vibrio cholerae MJ-1236] gi|254286659|ref|ZP_04961614.1| cold shock transcriptional regulator CspA [Vibrio cholerae AM-19226] gi|254850434|ref|ZP_05239784.1| cold shock transcriptional regulator CspA [Vibrio cholerae MO10] gi|255746020|ref|ZP_05419967.1| cold shock protein CspG [Vibrio cholera CIRS 101] gi|261212663|ref|ZP_05926947.1| cold shock protein CspG [Vibrio sp. RC341] gi|262162141|ref|ZP_06031156.1| cold shock protein CspG [Vibrio cholerae INDRE 91/1] gi|262164784|ref|ZP_06032522.1| cold shock protein CspG [Vibrio mimicus VM223] gi|262167803|ref|ZP_06035504.1| cold shock protein CspG [Vibrio cholerae RC27] gi|262173002|ref|ZP_06040679.1| cold shock protein CspG [Vibrio mimicus MB-451] gi|262189592|ref|ZP_06047992.1| cold shock protein CspG [Vibrio cholerae CT 5369-93] gi|262403347|ref|ZP_06079907.1| cold shock protein CspG [Vibrio sp. RC586] gi|297579705|ref|ZP_06941632.1| cold shock transcriptional regulator CspA [Vibrio cholerae RC385] gi|298500023|ref|ZP_07009829.1| cold shock transcriptional regulator CspA [Vibrio cholerae MAK 757] gi|20138011|sp|Q9KN00|CSPA_VIBCH RecName: Full=Cold shock-like protein CspA gi|9657556|gb|AAF96079.1| cold shock transcriptional regulator CspA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547786|gb|EAX57875.1| cold shock transcriptional regulator CspA [Vibrio cholerae 2740-80] gi|121629516|gb|EAX61940.1| cold shock transcriptional regulator CspA [Vibrio cholerae V52] gi|124115354|gb|EAY34174.1| cold shock transcriptional regulator CspA [Vibrio cholerae 1587] gi|124122104|gb|EAY40847.1| cold shock transcriptional regulator CspA [Vibrio cholerae MZO-3] gi|126512625|gb|EAZ75219.1| cold shock transcriptional regulator CspA [Vibrio cholerae NCTC 8457] gi|146314151|gb|ABQ18691.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395] gi|148874187|gb|EDL72322.1| cold shock transcriptional regulator CspA [Vibrio cholerae 623-39] gi|149741345|gb|EDM55379.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-2] gi|150423243|gb|EDN15189.1| cold shock transcriptional regulator CspA [Vibrio cholerae AM-19226] gi|227010934|gb|ACP07145.1| cold shock transcriptional regulator CspA [Vibrio cholerae M66-2] gi|227014793|gb|ACP11002.1| cold shock transcriptional regulator CspA [Vibrio cholerae O395] gi|229334215|gb|EEN99700.1| cold shock protein CspG [Vibrio cholerae 12129(1)] gi|229340053|gb|EEO05061.1| cold shock protein CspG [Vibrio cholerae TM 11079-80] gi|229345369|gb|EEO10342.1| cold shock protein CspG [Vibrio cholerae RC9] gi|229348646|gb|EEO13604.1| cold shock protein CspG [Vibrio cholerae TMA 21] gi|229352980|gb|EEO17920.1| cold shock protein CspG [Vibrio cholerae B33] gi|229357018|gb|EEO21936.1| cold shock protein CspG [Vibrio cholerae BX 330286] gi|229371630|gb|ACQ62052.1| cold shock protein CspG [Vibrio cholerae MJ-1236] gi|254846139|gb|EET24553.1| cold shock transcriptional regulator CspA [Vibrio cholerae MO10] gi|255735774|gb|EET91172.1| cold shock protein CspG [Vibrio cholera CIRS 101] gi|260837728|gb|EEX64405.1| cold shock protein CspG [Vibrio sp. RC341] gi|261890360|gb|EEY36347.1| cold shock protein CspG [Vibrio mimicus MB-451] gi|262023711|gb|EEY42411.1| cold shock protein CspG [Vibrio cholerae RC27] gi|262027164|gb|EEY45831.1| cold shock protein CspG [Vibrio mimicus VM223] gi|262028216|gb|EEY46874.1| cold shock protein CspG [Vibrio cholerae INDRE 91/1] gi|262034524|gb|EEY52864.1| cold shock protein CspG [Vibrio cholerae CT 5369-93] gi|262350846|gb|EEY99979.1| cold shock protein CspG [Vibrio sp. RC586] gi|297535351|gb|EFH74185.1| cold shock transcriptional regulator CspA [Vibrio cholerae RC385] gi|297542004|gb|EFH78055.1| cold shock transcriptional regulator CspA [Vibrio cholerae MAK 757] gi|327485389|gb|AEA79795.1| Cold shock protein CspG [Vibrio cholerae LMA3894-4] Length = 70 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI+ + G DVF+H ++ S G L EGQ V++ Q G Sbjct: 6 TGSVKWFNETKGFGFISQD---NGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQG-KKG 61 Query: 64 KYSAENLKL 72 +A+ L Sbjct: 62 PQAAQVTAL 70 >gi|85859293|ref|YP_461495.1| cold shock protein [Syntrophus aciditrophicus SB] gi|85722384|gb|ABC77327.1| cold shock protein [Syntrophus aciditrophicus SB] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI + G DVF+H S++ AG L E Q V ++ Q Sbjct: 1 MAQGRVKWFNDKKGFGFIE----NDEGGDVFVHFSSIQGAGWKTLNESQRVRFEIQQGQK 56 Query: 62 NGKYSAENLKLV 73 SA N++L+ Sbjct: 57 G--PSAVNVELI 66 >gi|154247142|ref|YP_001418100.1| cold-shock DNA-binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154161227|gb|ABS68443.1| putative cold-shock DNA-binding domain protein [Xanthobacter autotrophicus Py2] Length = 68 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI + E G DVF+H S V +GL+ L +GQ V++D V D Sbjct: 1 MATGTVKFFNSQKGFGFIQQD---EGGPDVFVHISDVERSGLYGLNDGQKVSFDIV-ADN 56 Query: 62 NGKYSAENLKLV 73 GK A NL + Sbjct: 57 RGKSKASNLAAL 68 >gi|152974668|ref|YP_001374185.1| cold-shock DNA-binding domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023420|gb|ABS21190.1| putative cold-shock DNA-binding domain protein [Bacillus cytotoxicus NVH 391-98] Length = 67 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G DVF+H SA+ + G +L EG+ V+++ +N Sbjct: 1 MTVTGQVKWFNNEKGFGFIE----VPGGSDVFVHFSAITTEGFKSLEEGEKVSFEI-ENG 55 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 56 NRGPQAKNVVKL 67 >gi|260775771|ref|ZP_05884667.1| putative cold-shock DNA-binding domain protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608187|gb|EEX34356.1| putative cold-shock DNA-binding domain protein [Vibrio coralliilyticus ATCC BAA-450] Length = 70 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI P+ DVF+H ++AS G L EGQ V ++ Q G Sbjct: 6 TGSVKWFNETKGFGFIAPD---NGTADVFVHFRSIASDGFKTLAEGQKVAFNVEQGG-KG 61 Query: 64 KYSAENLKL 72 +A+ L Sbjct: 62 PQAADVTVL 70 >gi|160947736|ref|ZP_02094903.1| hypothetical protein PEPMIC_01671 [Parvimonas micra ATCC 33270] gi|158446870|gb|EDP23865.1| hypothetical protein PEPMIC_01671 [Parvimonas micra ATCC 33270] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62 +G++KW+N KG+GFI STE G+DVF+H SA+ G L EGQ V ++ V+ A Sbjct: 2 KGTVKWFNAAKGFGFI----STEDGEDVFVHYSALEETGEFRTLDEGQAVEFEIVEG-AK 56 Query: 63 GKYSAENLKL 72 G ++ +KL Sbjct: 57 GPQASGVVKL 66 >gi|145589930|ref|YP_001156527.1| cold-shock DNA-binding domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|171464060|ref|YP_001798173.1| cold-shock DNA-binding domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|145048336|gb|ABP34963.1| cold-shock DNA-binding protein family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|171193598|gb|ACB44559.1| cold-shock DNA-binding domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 67 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ E +F H SA+ G L E Q VT+D Q Sbjct: 1 MATGIVKWFNDAKGFGFIKPDDGEEE---LFAHFSAITMPGFKTLKENQKVTFDITQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--KQATNIQ 65 >gi|51244785|ref|YP_064669.1| cold shock protein [Desulfotalea psychrophila LSv54] gi|50875822|emb|CAG35662.1| probable cold shock protein [Desulfotalea psychrophila LSv54] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI E GDD+F+H +++ ++G L EG V++D + Sbjct: 1 MAEGIVKWFNDAKGFGFIEQE----GGDDLFVHHTSINASGFKTLEEGARVSFDIEEGQ- 55 Query: 62 NGKYSAENLKL 72 G +A L Sbjct: 56 KGPAAANVTAL 66 >gi|310778654|ref|YP_003966987.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] gi|309747977|gb|ADO82639.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFIT +E G DVF H S + G L EG+ VT++ Q Sbjct: 1 MVKGTVKWFNGEKGFGFIT----SEEGTDVFAHFSEIQKDGFKTLEEGEQVTFEITQGQK 56 Query: 62 NGKYSAENLKLV 73 A N+K V Sbjct: 57 G--PQASNIKTV 66 >gi|27366952|ref|NP_762479.1| cold shock protein CspE [Vibrio vulnificus CMCP6] gi|37676727|ref|NP_937123.1| cold shock protein [Vibrio vulnificus YJ016] gi|320158831|ref|YP_004191209.1| cold shock protein CspE [Vibrio vulnificus MO6-24/O] gi|27358519|gb|AAO07469.1| Cold shock protein CspE [Vibrio vulnificus CMCP6] gi|37201270|dbj|BAC97093.1| cold shock protein [Vibrio vulnificus YJ016] gi|319934143|gb|ADV89006.1| cold shock protein CspE [Vibrio vulnificus MO6-24/O] Length = 69 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E+G DVF H SA+ G L EGQ V++ Q Sbjct: 6 TGTVKWFNETKGFGFI----KQENGPDVFAHFSAIKGDGFRTLAEGQKVSFVISQGQKG- 60 Query: 64 KYSAENLKLV 73 AE + L+ Sbjct: 61 -PQAEEITLL 69 >gi|238794630|ref|ZP_04638236.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909] gi|238797908|ref|ZP_04641399.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969] gi|238718213|gb|EEQ10038.1| Cold shock-like protein cspI [Yersinia mollaretii ATCC 43969] gi|238726019|gb|EEQ17567.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + +N A G Sbjct: 2 TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ENGAKG 57 Query: 64 KYSAENLKL 72 + + L Sbjct: 58 PSAVNVVAL 66 >gi|77361881|ref|YP_341456.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|77361882|ref|YP_341457.1| cold shock-like protein cspE, RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|76876792|emb|CAI88014.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|76876793|emb|CAI88015.1| Cold shock-like protein cspE, RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] Length = 69 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI E SG DVF H SA+ S G L EGQ V + Q Sbjct: 6 TGSVKWFNEAKGFGFIEQE----SGADVFAHFSAIVSDGFKTLAEGQRVQFTVTQGQKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -PQAENI 66 >gi|88703658|ref|ZP_01101374.1| cold shock DNA-binding domain protein [Congregibacter litoralis KT71] gi|88702372|gb|EAQ99475.1| cold shock DNA-binding domain protein [Congregibacter litoralis KT71] Length = 69 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI +SG DVF H SA+ +G L EGQ V + Q Sbjct: 6 TGTVKWFNESKGFGFIEQ----KSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+ V Sbjct: 61 -PQAENIVAV 69 >gi|254491849|ref|ZP_05105028.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga thiooxidans DMS010] gi|224463327|gb|EEF79597.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga thiooxydans DMS010] Length = 69 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI SG DVF H SA+ S+G L EGQ V + Sbjct: 6 TGTVKWFNEAKGFGFIEQ----ASGPDVFAHFSAIVSSGFKTLMEGQKVEFTVTTGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+ V Sbjct: 61 -PQAENIVAV 69 >gi|21224260|ref|NP_630039.1| cold-shock domain-containing protein [Streptomyces coelicolor A3(2)] gi|256784655|ref|ZP_05523086.1| cold-shock domain-containing protein [Streptomyces lividans TK24] gi|289768539|ref|ZP_06527917.1| cold-shock domain-containing protein [Streptomyces lividans TK24] gi|2815334|emb|CAA16458.1| cold-shock domain protein [Streptomyces coelicolor A3(2)] gi|91199666|emb|CAI78021.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|96771713|emb|CAI78295.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|117164258|emb|CAJ87800.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|126347370|emb|CAJ89078.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] gi|289698738|gb|EFD66167.1| cold-shock domain-containing protein [Streptomyces lividans TK24] Length = 67 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|332993980|gb|AEF04035.1| putative Cold shock-like protein [Alteromonas sp. SN2] Length = 70 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GF+T +G G DVF+H ++AS G L+EGQ V++ Q G Sbjct: 6 NGTVKWFNEDKGFGFLTQDG---GGKDVFVHFRSIASDGFKTLSEGQAVSFSVEQGQ-KG 61 Query: 64 KYSAENLKL 72 +A + L Sbjct: 62 LQAANVVVL 70 >gi|284921457|emb|CBG34526.1| cold shock-like protein [Escherichia coli 042] Length = 70 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+NP+KG+GFITP + DVF+H SA+ S LTE Q V + +N G Sbjct: 6 TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQEVEFGI-ENGPKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PAAVHVVAL 70 >gi|260549563|ref|ZP_05823781.1| cold-shock DNA-binding domain-containing protein [Acinetobacter sp. RUH2624] gi|260407356|gb|EEX00831.1| cold-shock DNA-binding domain-containing protein [Acinetobacter sp. RUH2624] Length = 70 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI + SG DVF H +AS+G L EGQ VT++ VQ Sbjct: 7 TGTVKWFNETKGFGFIQQD----SGPDVFAHFKEIASSGFKTLHEGQRVTFNVVQGQKG- 61 Query: 64 KYSAENL 70 SA N+ Sbjct: 62 -PSATNI 67 >gi|119946712|ref|YP_944392.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119865316|gb|ABM04793.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW+N KG+GFI SG DVF+H SA+AS G L EGQ V + Q Sbjct: 5 EQGTVKWFNEAKGFGFIEQ----ASGPDVFVHFSAIASEGFKTLAEGQKVEFSVSQGQKG 60 Query: 63 GK 64 + Sbjct: 61 PQ 62 >gi|312962742|ref|ZP_07777231.1| temperature acclimation protein b [Pseudomonas fluorescens WH6] gi|330811374|ref|YP_004355836.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|311283117|gb|EFQ61709.1| temperature acclimation protein b [Pseudomonas fluorescens WH6] gi|327379482|gb|AEA70832.1| Putative transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 70 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59 Query: 62 NGKYSAENLK 71 A+ ++ Sbjct: 60 G--MQADEVQ 67 >gi|308270407|emb|CBX27019.1| Major cold shock protein [uncultured Desulfobacterium sp.] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KGYGFI E +G+DVF+H SA+ AG L+EG+ VT+D Q + Sbjct: 1 MANGIVKWFSNKKGYGFIEQE----NGEDVFVHHSAINGAGFKTLSEGEKVTFDIEQGEK 56 Query: 62 NGKYSAENLKLV 73 +A N+ + Sbjct: 57 G--PAAVNVTKL 66 >gi|330819200|ref|YP_004348062.1| Cold shock protein [Burkholderia gladioli BSR3] gi|327371195|gb|AEA62550.1| Cold shock protein [Burkholderia gladioli BSR3] Length = 67 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI P+ S + D+F H S + G +L EGQ V+++ Sbjct: 1 MDTGIVKWFNDSKGFGFIAPDNSKD---DLFAHFSEIRGDGFRSLVEGQRVSFETKMGPK 57 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 58 G--LQASNIKAL 67 >gi|227505644|ref|ZP_03935693.1| cold shock protein [Corynebacterium striatum ATCC 6940] gi|227197797|gb|EEI77845.1| cold shock protein [Corynebacterium striatum ATCC 6940] Length = 67 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N +KGYGFI E + D+F+H S + G L E Q V+++ + Sbjct: 1 MAQGTVKFFNAEKGYGFIEME---DGSGDIFVHYSEIQGNGFRTLEENQKVSFEVAEGQK 57 Query: 62 NGKYSAENLKLV 73 A+N+ + Sbjct: 58 G--LQAQNVTAL 67 >gi|224369441|ref|YP_002603605.1| CspB1 [Desulfobacterium autotrophicum HRM2] gi|223692158|gb|ACN15441.1| CspB1 [Desulfobacterium autotrophicum HRM2] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI E +G DVF+H S + + G +L EG V++D + Sbjct: 1 MANGIVKWFNDSKGFGFIEQE----NGKDVFVHHSGINATGFKSLNEGDRVSFDIEEGPK 56 Query: 62 NGKYSAENLKLV 73 SA N+ ++ Sbjct: 57 G--PSATNVTVI 66 >gi|160878802|ref|YP_001557770.1| cold-shock DNA-binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160427468|gb|ABX41031.1| cold-shock DNA-binding domain protein [Clostridium phytofermentans ISDg] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GF++ E G+DVF+H SA+ G L EG+ V ++ V+ + Sbjct: 1 MKKGTVKWFNAKKGFGFLS----DEEGNDVFVHFSALNMDGFKVLEEGEAVAFEVVEGE- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 KGPQAANVTKL 66 >gi|77460616|ref|YP_350123.1| cold-shock DNA-binding protein [Pseudomonas fluorescens Pf0-1] gi|77384619|gb|ABA76132.1| major cold shock protein [Pseudomonas fluorescens Pf0-1] Length = 70 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59 Query: 62 N 62 Sbjct: 60 G 60 >gi|28199859|ref|NP_780173.1| temperature acclimation protein B [Xylella fastidiosa Temecula1] gi|71275239|ref|ZP_00651526.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon] gi|71899540|ref|ZP_00681696.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|71899925|ref|ZP_00682072.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|170731236|ref|YP_001776669.1| cold-shock DNA-binding domain-containing protein [Xylella fastidiosa M12] gi|182682610|ref|YP_001830770.1| cold-shock DNA-binding domain-containing protein [Xylella fastidiosa M23] gi|28057980|gb|AAO29822.1| temperature acclimation protein B [Xylella fastidiosa Temecula1] gi|71164048|gb|EAO13763.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Dixon] gi|71730288|gb|EAO32372.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|71730669|gb|EAO32744.1| Cold-shock protein, DNA-binding [Xylella fastidiosa Ann-1] gi|167966029|gb|ACA13039.1| putative cold-shock DNA-binding domain protein [Xylella fastidiosa M12] gi|182632720|gb|ACB93496.1| cold-shock DNA-binding domain protein [Xylella fastidiosa M23] gi|307578893|gb|ADN62862.1| temperature acclimation protein B [Xylella fastidiosa subsp. fastidiosa GB514] Length = 73 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFIT + +G D+F+H A+ G +L EGQ V++ VQ Sbjct: 8 RQIGTVKWFNDNKGFGFIT----SNNGPDLFVHYRAIQGNGFKSLQEGQKVSFVAVQGQK 63 Query: 62 NGKYSAENLKLV 73 A+ ++++ Sbjct: 64 G--MQADQVQVL 73 >gi|330447711|ref|ZP_08311359.1| cold shock protein CspG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491902|dbj|GAA05856.1| cold shock protein CspG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 70 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + G +KW+N +KG+GFIT + DVF+H A+ S G L +GQ V++D Q Sbjct: 5 NTGLVKWFNEEKGFGFITQD---NGAADVFVHFQAIVSDGFKTLMDGQKVSFDVEQGQ-K 60 Query: 63 GKYSAENLKL 72 G +A + L Sbjct: 61 GLQAANVVAL 70 >gi|239616519|ref|YP_002939841.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF 19.5.1] gi|239505350|gb|ACR78837.1| cold-shock DNA-binding domain protein [Kosmotoga olearia TBF 19.5.1] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFIT + G+DVF+H S + S G L EGQ V +D +N G Sbjct: 2 KGTVKWFNAQKGYGFITRD----EGEDVFIHFSGIVSDGFKTLEEGQRVEFDI-ENGQKG 56 Query: 64 KYSAENLKLVP 74 A N+K V Sbjct: 57 -AQAVNVKTVE 66 >gi|262275442|ref|ZP_06053252.1| putative Cold shock-like protein [Grimontia hollisae CIP 101886] gi|262220687|gb|EEY72002.1| putative Cold shock-like protein [Grimontia hollisae CIP 101886] Length = 68 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI E +G DVF+H A+ G L EGQ V ++ Q G Sbjct: 5 TGTVKWFNEEKGFGFIQQE----NGPDVFVHFRAITGEGFKTLAEGQQVAFEIEQGQ-KG 59 Query: 64 KYSAENLKL 72 +A K+ Sbjct: 60 PQAANVEKV 68 >gi|297568667|ref|YP_003690011.1| cold-shock DNA-binding domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924582|gb|ADH85392.1| cold-shock DNA-binding domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 66 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + SG DVF+H +A+ G +L EG V ++ V Sbjct: 1 MAEGTVKWFNDAKGFGFIAQD----SGSDVFVHHTAILGQGFKSLQEGARVEFEIVDGPK 56 Query: 62 NGKYSAENLK 71 +A N++ Sbjct: 57 G--PAASNVR 64 >gi|307253880|ref|ZP_07535732.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260575|ref|ZP_07542267.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306863084|gb|EFM95026.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306869652|gb|EFN01437.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 83 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ + G D+F+H S + + L EG V ++ VQ+ G Sbjct: 19 TGIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFE-VQDSERG 74 Query: 64 KYSAENLKLV 73 SA N+K + Sbjct: 75 P-SAVNVKTL 83 >gi|302760539|ref|XP_002963692.1| hypothetical protein SELMODRAFT_451445 [Selaginella moellendorffii] gi|300168960|gb|EFJ35563.1| hypothetical protein SELMODRAFT_451445 [Selaginella moellendorffii] Length = 184 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 44/67 (65%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P +G+GFITP+ + D+F+H++++ + G +L EG++V Y V+ +G+ Sbjct: 17 GKVKWFSPTRGFGFITPD---DGSPDIFVHQTSIHAEGFRSLREGEIVEY-VVELGQDGR 72 Query: 65 YSAENLK 71 A N+ Sbjct: 73 MRAGNVT 79 >gi|254514015|ref|ZP_05126076.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR5-3] gi|219676258|gb|EED32623.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR5-3] Length = 69 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI +SG DVF H SA+ +G L EGQ V + Q Sbjct: 6 TGTVKWFNESKGFGFIEQ----KSGPDVFAHFSAITGSGFKTLAEGQAVEFTITQGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+ V Sbjct: 61 -PQAENIVAV 69 >gi|49082348|gb|AAT50574.1| PA1159 [synthetic construct] Length = 70 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFI + SG DVF+H A+ G +L EGQ V + +Q Sbjct: 4 REVGTVKWFNDAKGYGFIQRD----SGPDVFVHYRAIRGEGHRSLVEGQKVEFSVIQGQK 59 Query: 62 NGKYSAENLKLV 73 AE++ V Sbjct: 60 G--LQAEDVSKV 69 >gi|226330479|ref|ZP_03805997.1| hypothetical protein PROPEN_04397 [Proteus penneri ATCC 35198] gi|225201274|gb|EEG83628.1| hypothetical protein PROPEN_04397 [Proteus penneri ATCC 35198] Length = 70 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW++ KG+GFITP + DVF+H SA+ S L EGQ V++ +N G Sbjct: 6 TGTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDNFKTLAEGQQVSFTM-ENGMKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PAAGNVVAL 70 >gi|221134864|ref|ZP_03561167.1| cold-shock DNA-binding domain-containing protein [Glaciecola sp. HTCC2999] Length = 74 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI PE + +D+F H S + G L GQ V YD VQ Sbjct: 1 MAIGKVKWFNNTKGFGFIVPE---DGNEDIFAHYSTIKMDGYRALKAGQSVHYDMVQGPK 57 Query: 62 NGKYSAENLKL 72 AEN+ + Sbjct: 58 G--LHAENISI 66 >gi|325916970|ref|ZP_08179212.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] gi|325536821|gb|EGD08575.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] Length = 69 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQVGTVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++ V Sbjct: 60 G--MQADQVQAV 69 >gi|71725897|gb|AAZ39067.1| cold shock protein [Exiguobacterium aurantiacum] Length = 67 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 5/65 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GFI E G DVF+H SA+ + G +L EGQ V ++ V + G Sbjct: 4 GIVKWFNLEKGFGFIEVE----GGKDVFVHFSAIQTDGYKSLDEGQEVEFEIV-DGERGP 58 Query: 65 YSAEN 69 +A Sbjct: 59 QAANV 63 >gi|26249019|ref|NP_755059.1| cold shock-like protein cspI [Escherichia coli CFT073] gi|157161028|ref|YP_001458346.1| cold shock DNA-binding protein [Escherichia coli HS] gi|26109426|gb|AAN81629.1|AE016765_31 Cold shock-like protein cspI [Escherichia coli CFT073] gi|157066708|gb|ABV05963.1| cold shock DNA-binding protein [Escherichia coli HS] gi|315293040|gb|EFU52392.1| transcriptional repressor activity CueR [Escherichia coli MS 153-1] Length = 71 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 1 MV---HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 M+ G +KW+NP+KG+GFITP + DVF+H SA+ S LTE Q V + Sbjct: 1 MMSNKMTGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQEVEFGI- 56 Query: 58 QNDANGKYSAENLKL 72 +N G + + L Sbjct: 57 ENGPKGPAAVHVVAL 71 >gi|50084495|ref|YP_046005.1| putative cold shock protein [Acinetobacter sp. ADP1] gi|49530471|emb|CAG68183.1| putative cold shock protein [Acinetobacter sp. ADP1] Length = 70 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G +KW+N KG+GFI GDDVF+H A+ G +L +GQ V + VQ Sbjct: 4 REQGVVKWFNDTKGFGFIQ----RNGGDDVFVHFRAIMGDGHRSLRDGQRVEFSVVQGQK 59 Query: 62 NGKYSAENLKLV 73 + AEN++ + Sbjct: 60 G--FQAENVQPL 69 >gi|307132939|ref|YP_003884955.1| Cold shock protein [Dickeya dadantii 3937] gi|306530468|gb|ADN00399.1| Cold shock protein [Dickeya dadantii 3937] Length = 70 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFITP + DVF+H SA+ S L EGQ V + + N G Sbjct: 6 TGSVKWFNETKGFGFITP---ADGSKDVFVHFSAIQSDSFKTLYEGQKVEF-VIGNGPKG 61 Query: 64 KYSAENL 70 SAEN+ Sbjct: 62 P-SAENV 67 >gi|92118615|ref|YP_578344.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91801509|gb|ABE63884.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 71 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N ++GYGFI P+ + G DVF+H +AV AGL L+EGQ VT++ + Sbjct: 1 MSMTGTVKFFNGERGYGFIKPD---DGGRDVFVHITAVEQAGLTELSEGQRVTFEVEPDK 57 Query: 61 ANGKYSAENLKL 72 A NL + Sbjct: 58 KGKGPKAVNLVI 69 >gi|238024869|ref|YP_002909101.1| Cold shock protein [Burkholderia glumae BGR1] gi|237879534|gb|ACR31866.1| Cold shock protein [Burkholderia glumae BGR1] Length = 67 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI+P+ DD+F H S + G +L EGQ V+++ + Sbjct: 1 MDTGIVKWFNDSKGFGFISPD---NGKDDLFAHFSEIRGDGFRSLAEGQRVSFE-TKVGQ 56 Query: 62 NGKYSAE 68 G +A Sbjct: 57 KGLQAAN 63 >gi|330936728|gb|EGH40913.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 105 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D Sbjct: 38 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG- 92 Query: 64 KYSAENL 70 AE++ Sbjct: 93 -LQAEDV 98 >gi|322420677|ref|YP_004199900.1| cold-shock DNA-binding domain-containing protein [Geobacter sp. M18] gi|320127064|gb|ADW14624.1| cold-shock DNA-binding domain protein [Geobacter sp. M18] Length = 66 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E +GDDVF+H SA+ G +L EG VT++ + Sbjct: 1 MVNGTVKWFNDSKGFGFIEQE----NGDDVFVHFSAITGDGFKSLAEGDSVTFEVAKG-P 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 KGLQAANV 63 >gi|229591242|ref|YP_002873361.1| putative cold-shock protein [Pseudomonas fluorescens SBW25] gi|229363108|emb|CAY50116.1| putative cold-shock protein [Pseudomonas fluorescens SBW25] Length = 91 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KGYGFI +G +E D+F H SA+ G L GQ V+++ +Q Sbjct: 8 GKVKWFNNAKGYGFIIEDGKSE---DLFAHFSAIIMDGYKTLKAGQAVSFEIIQGPKG-- 62 Query: 65 YSAENLKLVPK 75 A N+ V + Sbjct: 63 LHAVNIDTVKE 73 >gi|153835791|ref|ZP_01988458.1| cold shock domain protein CspD [Vibrio harveyi HY01] gi|148867479|gb|EDL66854.1| cold shock domain protein CspD [Vibrio harveyi HY01] Length = 72 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + E D+F H S + G L GQ V+Y+ + Sbjct: 1 MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYEI-EKGP 56 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 57 KGSHASSVVPI 67 >gi|258624846|ref|ZP_05719774.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603] gi|258582844|gb|EEW07665.1| cold shock transcriptional regulator CspA [Vibrio mimicus VM603] Length = 66 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI+ + G DVF+H ++ S G L EGQ V++ Q G Sbjct: 2 TGSVKWFNETKGFGFISQD---NGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQG-KKG 57 Query: 64 KYSAENLKL 72 +A+ L Sbjct: 58 PQAAQVTAL 66 >gi|19551424|ref|NP_599426.1| cold shock protein [Corynebacterium glutamicum ATCC 13032] gi|62389068|ref|YP_224470.1| cold-shock protein CspA [Corynebacterium glutamicum ATCC 13032] gi|21322938|dbj|BAB97567.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032] gi|41324401|emb|CAF18741.1| COLD-SHOCK PROTEIN CSPA [Corynebacterium glutamicum ATCC 13032] Length = 67 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P + D+F+H S + +G NL E Q V ++ + Sbjct: 1 MAQGTVKWFNGEKGFGFIAP---NDGSADLFVHYSEIQGSGFRNLEENQPVEFEVGEGAK 57 Query: 62 NGKYSAENLKLV 73 A+ ++ + Sbjct: 58 G--PQAQQVRAL 67 >gi|116620045|ref|YP_822201.1| cold-shock DNA-binding protein family protein [Candidatus Solibacter usitatus Ellin6076] gi|116223207|gb|ABJ81916.1| cold-shock DNA-binding protein family [Candidatus Solibacter usitatus Ellin6076] Length = 67 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW+N KG+GFI E +G+DVF+H SA++++G +L EG V++ V+ Sbjct: 1 MRETGTVKWFNAGKGFGFIQRE----NGEDVFVHFSAISASGYRSLDEGARVSF-VVKKG 55 Query: 61 ANGKYSAENLK 71 G AE++ Sbjct: 56 PKG-LQAEDVS 65 >gi|119469734|ref|ZP_01612603.1| Cold shock protein [Alteromonadales bacterium TW-7] gi|119446981|gb|EAW28252.1| Cold shock protein [Alteromonadales bacterium TW-7] Length = 69 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI E SG DVF H SA++ G L EGQ V + Q Sbjct: 6 TGSVKWFNEAKGFGFIEQE----SGPDVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -PQAENI 66 >gi|28868485|ref|NP_791104.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28851723|gb|AAO54799.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331015230|gb|EGH95286.1| cold shock domain family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 70 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59 Query: 62 N 62 Sbjct: 60 G 60 >gi|307546402|ref|YP_003898881.1| cold shock protein CspA [Halomonas elongata DSM 2581] gi|307218426|emb|CBV43696.1| K03704 cold shock protein (beta-ribbon, CspA family) [Halomonas elongata DSM 2581] Length = 154 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N +KGYGFIT + SG+DVF+H A+ G L EGQ V Y +N+ Sbjct: 88 REIGEVKWFNVNKGYGFITRD----SGEDVFVHFRAIRGRGHRTLAEGQKVKYQVSRNER 143 Query: 62 NGKYSAENLKLV 73 A+++ ++ Sbjct: 144 G--LQADDVTVI 153 >gi|197284851|ref|YP_002150723.1| cold shock protein [Proteus mirabilis HI4320] gi|194682338|emb|CAR42146.1| cold shock protein [Proteus mirabilis HI4320] Length = 70 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW++ KG+GFITP + DVF+H SA+ S L EGQ V++ +N G Sbjct: 6 TGTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDNFKTLAEGQQVSFTM-ENGMKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PAAGNVVAL 70 >gi|88798111|ref|ZP_01113698.1| Cold shock protein [Reinekea sp. MED297] gi|88779308|gb|EAR10496.1| Cold shock protein [Reinekea sp. MED297] Length = 153 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GF+T + +G+DVF+H ++ G +L EGQ V + V++ Sbjct: 85 REEGLVKWFNVSKGFGFVTRD----NGEDVFVHFRSIRGRGHRSLQEGQRVRFGVVESSK 140 Query: 62 NGKYSAENLKLVPK 75 AE++ +V + Sbjct: 141 G--LQAEDVTIVRQ 152 >gi|260438024|ref|ZP_05791840.1| cold shock protein [Butyrivibrio crossotus DSM 2876] gi|292809503|gb|EFF68708.1| cold shock protein [Butyrivibrio crossotus DSM 2876] Length = 66 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++KW+N KG+GFI S E+G D+F+H S + G L EGQ V ++ Sbjct: 1 MNKGTVKWFNDQKGFGFI----SDENGKDIFVHFSGIVMDGHKKLEEGQKVEFEVADGAK 56 Query: 62 NGKYSAENLKLV 73 A N+K++ Sbjct: 57 G--PQAVNVKVI 66 >gi|148263031|ref|YP_001229737.1| cold-shock DNA-binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146396531|gb|ABQ25164.1| cold-shock DNA-binding protein family [Geobacter uraniireducens Rf4] Length = 68 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GF+ E +G+DVF+H SA+ G +L EG VT++ + Sbjct: 3 MEKGKVKWFNDSKGFGFLEQE----NGEDVFVHFSAITGDGFKSLNEGDNVTFEVTKG-P 57 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 58 KGLQAANVTRV 68 >gi|56461593|ref|YP_156874.1| cold shock protein [Idiomarina loihiensis L2TR] gi|56180603|gb|AAV83325.1| Cold shock protein [Idiomarina loihiensis L2TR] Length = 69 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI E +G DVF H SA++S G LTEGQ V + Q Sbjct: 6 TGSVKWFNEAKGFGFIERE----NGADVFAHFSAISSDGFKTLTEGQRVEFAVTQGPKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -PQAENI 66 >gi|13472374|ref|NP_103941.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|14023120|dbj|BAB49727.1| probable cold shock protein [Mesorhizobium loti MAFF303099] Length = 68 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K+YN KG+GFI P + G DVF+H SA+ AG L EGQ + +D + D Sbjct: 1 MTTGIVKFYNGQKGFGFIQP---ADGGKDVFVHVSALERAGFPGLAEGQKLQFDL-ERDG 56 Query: 62 NGKYSAENLKLV 73 G+ SA NL+L+ Sbjct: 57 KGRESAANLQLI 68 >gi|300855138|ref|YP_003780122.1| cold-shock protein [Clostridium ljungdahlii DSM 13528] gi|300435253|gb|ADK15020.1| cold-shock protein [Clostridium ljungdahlii DSM 13528] Length = 65 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT E G D+F H S + S G L EGQ V+YD Q Sbjct: 2 NGTVKWFNGEKGFGFIT----GEDGKDIFAHFSQINSDGYKTLEEGQKVSYDEGQGQKG- 56 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 57 -PQAENITVL 65 >gi|227356923|ref|ZP_03841300.1| CspA family cold shock transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227162921|gb|EEI47871.1| CspA family cold shock transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 70 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW++ KG+GFITP + DVF+H SA+ S L EGQ V++ +N G Sbjct: 6 TGTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDSFKTLAEGQQVSFTM-ENGMKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PAAGNVVAL 70 >gi|225390644|ref|ZP_03760368.1| hypothetical protein CLOSTASPAR_04399 [Clostridium asparagiforme DSM 15981] gi|225043262|gb|EEG53508.1| hypothetical protein CLOSTASPAR_04399 [Clostridium asparagiforme DSM 15981] Length = 65 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V +D V N A G Sbjct: 2 KGTVKWFNNQKGYGFIS----DEQGNDVFVHYSGLNMDGFKSLDEGAAVEFDVV-NGAKG 56 Query: 64 KYSAENLKL 72 + KL Sbjct: 57 PQATNVTKL 65 >gi|197117779|ref|YP_002138206.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|197087139|gb|ACH38410.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] Length = 66 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ E +GDDVF H SA+ G +L EG VT+D V+ Sbjct: 1 MANGTVKWFNDSKGFGFLEQE----NGDDVFCHFSAITGEGFKSLVEGDSVTFDVVRG-P 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGLQAANVTRV 66 >gi|119946183|ref|YP_943863.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119864787|gb|ABM04264.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q Sbjct: 5 EQGTVKWFNEAKGFGFIEQ----ASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKG 60 Query: 63 GK 64 + Sbjct: 61 PQ 62 >gi|305680386|ref|ZP_07403194.1| cold shock protein CspA [Corynebacterium matruchotii ATCC 14266] gi|305659917|gb|EFM49416.1| cold shock protein CspA [Corynebacterium matruchotii ATCC 14266] Length = 68 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H S + G L E Q+V ++ Sbjct: 1 MAKGTVKWFNAEKGFGFIEPE---DGSADVFVHYSEINGDGFRYLEEDQVVEFEV--GGG 55 Query: 62 NGKYSAENLKLV 73 A N++++ Sbjct: 56 AKGTQALNVRVI 67 >gi|66045400|ref|YP_235241.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|289673296|ref|ZP_06494186.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae FF5] gi|302187611|ref|ZP_07264284.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae 642] gi|63256107|gb|AAY37203.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|330898081|gb|EGH29500.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. japonica str. M301072PT] gi|330951864|gb|EGH52124.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7] gi|330973953|gb|EGH74019.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris str. M302273PT] Length = 70 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ VT+ + Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDGFKSLKEGQTVTFVAAKGQK 60 Query: 62 NGKYSAENLKL 72 AE +++ Sbjct: 61 G--MQAEEVQV 69 >gi|238758372|ref|ZP_04619550.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236] gi|238703495|gb|EEP96034.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236] Length = 66 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + ++ A G Sbjct: 2 TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSI-ESGAKG 57 Query: 64 KYSAENLKL 72 + + L Sbjct: 58 PSAVNVVAL 66 >gi|312796301|ref|YP_004029223.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] gi|312168076|emb|CBW75079.1| Cold shock protein [Burkholderia rhizoxinica HKI 454] Length = 72 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ G+D+F H S V G L E Q V+Y + Sbjct: 6 MDTGIVKWFNDSKGFGFITPDA---GGEDLFAHFSEVTGEGFKTLVENQRVSYQVKRGPK 62 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 63 G--LQAANIKPL 72 >gi|126642302|ref|YP_001085286.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978] gi|169633000|ref|YP_001706736.1| putative cold shock protein [Acinetobacter baumannii SDF] gi|169795349|ref|YP_001713142.1| putative cold shock protein [Acinetobacter baumannii AYE] gi|184158782|ref|YP_001847121.1| cold shock protein [Acinetobacter baumannii ACICU] gi|213158664|ref|YP_002319962.1| cold-shock domain protein [Acinetobacter baumannii AB0057] gi|215482883|ref|YP_002325086.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294] gi|226952983|ref|ZP_03823447.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|239502878|ref|ZP_04662188.1| Cold shock-like protein cspG [Acinetobacter baumannii AB900] gi|260550926|ref|ZP_05825132.1| cold-shock domain-containing protein [Acinetobacter sp. RUH2624] gi|260554463|ref|ZP_05826684.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] gi|262278446|ref|ZP_06056231.1| cold shock domain-containing protein CspD [Acinetobacter calcoaceticus RUH2202] gi|293609548|ref|ZP_06691850.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|294650565|ref|ZP_06727922.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC 19194] gi|299769391|ref|YP_003731417.1| Cold shock-like protein cspG [Acinetobacter sp. DR1] gi|301348039|ref|ZP_07228780.1| Cold shock-like protein cspG [Acinetobacter baumannii AB056] gi|301510877|ref|ZP_07236114.1| Cold shock-like protein cspG [Acinetobacter baumannii AB058] gi|301596796|ref|ZP_07241804.1| Cold shock-like protein cspG [Acinetobacter baumannii AB059] gi|332850461|ref|ZP_08432781.1| cold shock-like protein CspG [Acinetobacter baumannii 6013150] gi|332871913|ref|ZP_08440325.1| cold shock-like protein CspG [Acinetobacter baumannii 6013113] gi|332875151|ref|ZP_08442984.1| cold shock-like protein CspG [Acinetobacter baumannii 6014059] gi|126388186|gb|ABO12684.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978] gi|169148276|emb|CAM86141.1| putative cold shock protein [Acinetobacter baumannii AYE] gi|169151792|emb|CAP00613.1| putative cold shock protein [Acinetobacter baumannii] gi|183210376|gb|ACC57774.1| Cold shock protein [Acinetobacter baumannii ACICU] gi|213057824|gb|ACJ42726.1| cold-shock domain protein [Acinetobacter baumannii AB0057] gi|213988402|gb|ACJ58701.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294] gi|226836304|gb|EEH68687.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|260406053|gb|EEW99539.1| cold-shock domain-containing protein [Acinetobacter sp. RUH2624] gi|260411005|gb|EEX04302.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] gi|262258797|gb|EEY77530.1| cold shock domain-containing protein CspD [Acinetobacter calcoaceticus RUH2202] gi|292823562|gb|EFF82408.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC 19194] gi|292828000|gb|EFF86363.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|298699479|gb|ADI90044.1| Cold shock-like protein cspG [Acinetobacter sp. DR1] gi|322507405|gb|ADX02859.1| cold shock protein [Acinetobacter baumannii 1656-2] gi|323518697|gb|ADX93078.1| cold shock protein [Acinetobacter baumannii TCDC-AB0715] gi|325122817|gb|ADY82340.1| putative cold shock protein [Acinetobacter calcoaceticus PHEA-2] gi|332730732|gb|EGJ62043.1| cold shock-like protein CspG [Acinetobacter baumannii 6013150] gi|332731127|gb|EGJ62428.1| cold shock-like protein CspG [Acinetobacter baumannii 6013113] gi|332736595|gb|EGJ67589.1| cold shock-like protein CspG [Acinetobacter baumannii 6014059] Length = 70 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G +KW+N KG+GFI GDDVF+H A+ G +L +GQ V + VQ Sbjct: 4 REQGVVKWFNDTKGFGFIQ----RNGGDDVFVHFRAIVGDGHRSLRDGQRVEFSVVQGQK 59 Query: 62 NGKYSAENLKLV 73 + AEN++ + Sbjct: 60 G--FQAENVQPL 69 >gi|269960957|ref|ZP_06175326.1| cold shock-like protein CspD [Vibrio harveyi 1DA3] gi|269834176|gb|EEZ88266.1| cold shock-like protein CspD [Vibrio harveyi 1DA3] Length = 72 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + E D+F H S + G L GQ V+Y+ V+ Sbjct: 1 MATGTVKWFNNAKGFGFICSD---EEEGDIFAHYSTIQMDGYRTLKAGQQVSYE-VEKGP 56 Query: 62 NGKYSAENLKL 72 G +++ + + Sbjct: 57 KGSHASSVVPV 67 >gi|302523740|ref|ZP_07276082.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] gi|302432635|gb|EFL04451.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] Length = 67 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI +G DVF+H S + G L E Q V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFIAQDGGE---GDVFVHYSEIEGRGFRTLEENQRVEFEVGQGQK 57 Query: 62 NGKYS 66 + Sbjct: 58 GPQAQ 62 >gi|254492585|ref|ZP_05105756.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga thiooxidans DMS010] gi|224462106|gb|EEF78384.1| 'Cold-shock' DNA-binding domain, putative [Methylophaga thiooxydans DMS010] Length = 69 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI G DVF+H +A+ S G L EGQ VT + Q Sbjct: 6 TGTVKWFNDAKGFGFIEQ----VDGPDVFVHHTAIKSEGFRTLKEGQAVTMEVTQGQKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -PQAENV 66 >gi|50121397|ref|YP_050564.1| cold shock protein [Pectobacterium atrosepticum SCRI1043] gi|227328628|ref|ZP_03832652.1| cold shock protein [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|261821404|ref|YP_003259510.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] gi|49611923|emb|CAG75372.1| cold shock protein [Pectobacterium atrosepticum SCRI1043] gi|261605417|gb|ACX87903.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] Length = 70 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP+ DVF+H SA+ S L EGQ V + +N G Sbjct: 6 TGLVKWFDAGKGFGFITPD---NGSKDVFVHFSAIQSNDFKTLDEGQKVEFTI-ENGQKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAGNVVAL 70 >gi|194366422|ref|YP_002029032.1| cold-shock DNA-binding domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194349226|gb|ACF52349.1| cold-shock DNA-binding domain protein [Stenotrophomonas maltophilia R551-3] Length = 69 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI+ ++G+DVF+H A+ + G +L EGQ V+++ VQ Sbjct: 4 RETGTVKWFNDAKGFGFIS----RQNGEDVFVHFRAIETQGFKSLKEGQAVSFEVVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++ V Sbjct: 60 G--LQADKVQPV 69 >gi|315282229|ref|ZP_07870683.1| conserved domain protein [Listeria marthii FSL S4-120] gi|313614131|gb|EFR87821.1| conserved domain protein [Listeria marthii FSL S4-120] Length = 66 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K N +KG+GFI E +GDDVF+H SA+ G +L EGQ VT+D V+ Sbjct: 1 MEQGTVKNPNAEKGFGFIERE----NGDDVFVHFSAIQGDGFKSLDEGQAVTFD-VEEGQ 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGPQAANVQK 65 >gi|1706172|sp|P54584|CSP_ARTGO RecName: Full=Cold shock protein gi|758663|gb|AAB81323.1| cold shock protein [Arthrobacter globiformis] Length = 67 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFITP+ S DVF+H S + + G L E V ++ Q Sbjct: 1 MAQGTVKWFNAEKGFGFITPDDSD---GDVFVHYSEIQTGGFKTLDENARVQFEIGQGAK 57 Query: 62 NGKYSAENLKLV 73 A + LV Sbjct: 58 G--PQATGVTLV 67 >gi|322433221|ref|YP_004210442.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321165613|gb|ADW71315.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 83 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KGYGF+ E G DVF+H S++ G L EG V +D +Q + + Sbjct: 6 GEVKWFNNAKGYGFL----GREGGPDVFVHYSSIQLDGYKTLKEGDPVEFDIIQGNKGPQ 61 >gi|110833014|ref|YP_691873.1| cold-shock protein [Alcanivorax borkumensis SK2] gi|254427611|ref|ZP_05041318.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881] gi|110646125|emb|CAL15601.1| cold-shock protein [Alcanivorax borkumensis SK2] gi|196193780|gb|EDX88739.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881] Length = 68 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GF+ E +G DVF H SA+ +G L EGQ V + Q Sbjct: 5 KGTVKWFNEAKGFGFLEQE----NGPDVFAHFSAITGSGFKTLAEGQAVEFTVTQGPKG- 59 Query: 64 KYSAENL 70 AEN+ Sbjct: 60 -PQAENI 65 >gi|90021439|ref|YP_527266.1| cold-shock DNA-binding protein family protein [Saccharophagus degradans 2-40] gi|89951039|gb|ABD81054.1| cold-shock DNA-binding protein family [Saccharophagus degradans 2-40] Length = 75 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 3/71 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTE-SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW+N +GYGFIT + E GDD+F+H ++ G +L EGQ V + Q D Sbjct: 6 KGTVKWFNNARGYGFITAGATEEKEGDDIFVHYRSIRGEGYKSLNEGQAVEFSLQQGDKG 65 Query: 63 GKYSAENLKLV 73 + A+++ L+ Sbjct: 66 --FHADDVALI 74 >gi|28869573|ref|NP_792192.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|71734745|ref|YP_274352.1| cold shock protein CapA [Pseudomonas syringae pv. phaseolicola 1448A] gi|213970497|ref|ZP_03398624.1| cold shock protein CapA [Pseudomonas syringae pv. tomato T1] gi|237801017|ref|ZP_04589478.1| cold shock protein CapA [Pseudomonas syringae pv. oryzae str. 1_6] gi|257486174|ref|ZP_05640215.1| cold shock protein CapA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289623638|ref|ZP_06456592.1| cold shock protein CapA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647144|ref|ZP_06478487.1| cold shock protein CapA [Pseudomonas syringae pv. aesculi str. 2250] gi|298486699|ref|ZP_07004756.1| cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301384172|ref|ZP_07232590.1| cold shock protein CapA [Pseudomonas syringae pv. tomato Max13] gi|302063987|ref|ZP_07255528.1| cold shock protein CapA [Pseudomonas syringae pv. tomato K40] gi|302132645|ref|ZP_07258635.1| cold shock protein CapA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852815|gb|AAO55887.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|71555298|gb|AAZ34509.1| cold shock protein CapA [Pseudomonas syringae pv. phaseolicola 1448A] gi|213924668|gb|EEB58236.1| cold shock protein CapA [Pseudomonas syringae pv. tomato T1] gi|298158782|gb|EFH99845.1| cold shock protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324300|gb|EFW80379.1| cold shock protein CapA [Pseudomonas syringae pv. glycinea str. B076] gi|320328578|gb|EFW84580.1| cold shock protein CapA [Pseudomonas syringae pv. glycinea str. race 4] gi|330888313|gb|EGH20974.1| cold shock protein CapA [Pseudomonas syringae pv. mori str. 301020] gi|331016141|gb|EGH96197.1| cold shock protein CapA [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331023874|gb|EGI03931.1| cold shock protein CapA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 70 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ + Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSFVAAKGQK 60 Query: 62 NGKYSAENLKL 72 AE +++ Sbjct: 61 G--MQAEQVRV 69 >gi|294633715|ref|ZP_06712273.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292830357|gb|EFF88708.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 67 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S ++ G L EG+ VT+D Q Sbjct: 1 MASGTVKWFNSEKGFGFIAQDG---GGPDVFAHYSNISGNGYRELVEGEPVTFDVTQGQK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PQAENI 64 >gi|311693752|gb|ADP96625.1| cold shock, CspA [marine bacterium HP15] Length = 76 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT E SG DVF+H SA+ G L EGQ V + Q Sbjct: 13 TGNVKFFNEAKGFGFITRE----SGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKG- 67 Query: 64 KYSAENL 70 AEN+ Sbjct: 68 -PQAENV 73 >gi|298505030|gb|ADI83753.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens KN400] Length = 66 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GF+ E +G DVF+H SA+ +G +L EG+ VT+D V N Sbjct: 1 MAKGRVKWFNDSKGFGFLEQE----NGVDVFVHFSAITGSGFKSLAEGEEVTFDVV-NGP 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 KGLQAANVCKL 66 >gi|322420218|ref|YP_004199441.1| cold-shock DNA-binding domain-containing protein [Geobacter sp. M18] gi|320126605|gb|ADW14165.1| cold-shock DNA-binding domain protein [Geobacter sp. M18] Length = 66 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ E +G+DVF H SA+ G +L EG VT+D V+ Sbjct: 1 MANGTVKWFNDSKGFGFLEQE----NGEDVFCHFSAITGDGFKSLAEGDRVTFDLVKG-P 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 KGLQAANVKKI 66 >gi|94499152|ref|ZP_01305690.1| putative cold-shock DNA-binding domain protein [Oceanobacter sp. RED65] gi|94428784|gb|EAT13756.1| putative cold-shock DNA-binding domain protein [Oceanobacter sp. RED65] Length = 68 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI + G DVF+H SA+ +G L EGQ VT Q Sbjct: 5 TGTVKWFNDEKGFGFIQQD----GGKDVFVHYSAIQGSGRRTLAEGQQVTMTVTQGQKG- 59 Query: 64 KYSAENLK 71 AE+++ Sbjct: 60 -LQAEDVE 66 >gi|325273425|ref|ZP_08139677.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] gi|324101438|gb|EGB99032.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] Length = 86 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGF+ EG + D+F H SA+ G L GQ VT+D +Q Sbjct: 1 MASGKVKWFNNAKGYGFVNEEGKND---DLFAHYSAIQMDGYKTLKAGQAVTFDVIQGPK 57 Query: 62 NGKYSAENL 70 A N+ Sbjct: 58 G--LHAVNI 64 >gi|73538776|ref|YP_299143.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72122113|gb|AAZ64299.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 67 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H SA+ AG +L EGQ V Y Sbjct: 1 METGTVKWFNDAKGFGFITPDA---GGNDLFAHFSAIEGAGFKSLKEGQKVRY-VKAMGQ 56 Query: 62 NGKYS 66 G+ + Sbjct: 57 KGEQA 61 >gi|300719018|ref|YP_003743821.1| Cold-shock DNA-binding domain protein [Erwinia billingiae Eb661] gi|299064854|emb|CAX61974.1| Cold-shock DNA-binding domain protein [Erwinia billingiae Eb661] Length = 70 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + DVF+H SA+ S L EGQ V + V+N A G Sbjct: 6 TGLVKWFNADKGFGFISP---QDGSKDVFVHFSAIQSNDFKTLDEGQTVQFS-VENGAKG 61 Query: 64 KYSAENL 70 + + Sbjct: 62 PSAVNVI 68 >gi|226945960|ref|YP_002801033.1| Cold-shock-like protein [Azotobacter vinelandii DJ] gi|226720887|gb|ACO80058.1| Cold-shock-like protein [Azotobacter vinelandii DJ] Length = 69 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFI E SG DVF+H A+ G +L EGQ V + +Q Sbjct: 4 REVGTVKWFNDAKGYGFIQRE----SGPDVFVHYRAIRGEGHRSLIEGQKVEFSVIQGQK 59 Query: 62 NGKYSAENLK 71 AE++ Sbjct: 60 G--LQAEDVS 67 >gi|32034585|ref|ZP_00134741.1| COG1278: Cold shock proteins [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207606|ref|YP_001052831.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae L20] gi|165975574|ref|YP_001651167.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149388|ref|YP_001967913.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249822|ref|ZP_07336026.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251942|ref|ZP_07338113.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307244926|ref|ZP_07527023.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247101|ref|ZP_07529153.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249322|ref|ZP_07531316.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251645|ref|ZP_07533550.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256143|ref|ZP_07537930.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258334|ref|ZP_07540075.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262705|ref|ZP_07544333.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096398|gb|ABN73226.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875675|gb|ABY68723.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914519|gb|ACE60771.1| cold shock-like protein CspC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649372|gb|EFL79557.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651389|gb|EFL81541.1| cold shock-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854091|gb|EFM86299.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856350|gb|EFM88501.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858616|gb|EFM90678.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860842|gb|EFM92850.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865324|gb|EFM97220.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867518|gb|EFM99365.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871960|gb|EFN03676.1| Cold shock-like protein cspC [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 69 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ + G D+F+H S + + L EG V ++ VQ+ G Sbjct: 5 TGIVKWFNSTKGFGFITPD---QGGKDIFVHFSGIVGSNFRTLEEGAKVEFE-VQDSERG 60 Query: 64 KYSAENLKLV 73 SA N+K + Sbjct: 61 P-SAVNVKTL 69 >gi|227111587|ref|ZP_03825243.1| cold shock protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|253688227|ref|YP_003017417.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754805|gb|ACT12881.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 70 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP+ DVF+H SA+ S L EGQ V + +N G Sbjct: 6 TGLVKWFDAGKGFGFITPD---NGSKDVFVHFSAIQSNDFKTLDEGQKVEFTI-ENGQKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PAAGNVVAL 70 >gi|119946714|ref|YP_944394.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119865318|gb|ABM04795.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW+N KG+GFI SG DVF+H SA+AS G L EGQ V + Q Sbjct: 5 EQGTVKWFNEAKGFGFIEQ----ASGPDVFVHFSAIASEGFKTLAEGQKVEFTVSQGQKG 60 Query: 63 GK 64 + Sbjct: 61 PQ 62 >gi|91775541|ref|YP_545297.1| cold-shock DNA-binding protein family protein [Methylobacillus flagellatus KT] gi|91709528|gb|ABE49456.1| cold-shock DNA-binding protein family [Methylobacillus flagellatus KT] Length = 68 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 + G +KW+N KG+GFITP+ E G D+F H SA+ + G +L E Q V++D + Sbjct: 1 MATGIVKWFNDSKGFGFITPD---EGGSDLFAHFSAIVNEGGYKSLAENQRVSFDVT-DG 56 Query: 61 ANGKYSAENLK 71 GK A N+K Sbjct: 57 PKGKQ-ASNIK 66 >gi|88706396|ref|ZP_01104101.1| Cold shock protein [Congregibacter litoralis KT71] gi|88699332|gb|EAQ96446.1| Cold shock protein [Congregibacter litoralis KT71] Length = 68 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E G DVF+H SA+ G LT+GQ V + + G Sbjct: 5 TGTVKWFNESKGFGFIERE----GGPDVFVHFSAIKGDGFKTLTDGQKVEFTVT-DGQKG 59 Query: 64 KYSAENLKL 72 + + + + Sbjct: 60 PQAEDVVAV 68 >gi|163801267|ref|ZP_02195166.1| cold-shock DNA-binding domain protein [Vibrio sp. AND4] gi|159174756|gb|EDP59556.1| cold-shock DNA-binding domain protein [Vibrio sp. AND4] Length = 70 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFITP+ G D+F+H ++AS G LTEGQ V+++ Q + Sbjct: 6 TGSVKWFNESKGFGFITPD---NGGSDLFVHFKSIASEGFKTLTEGQKVSFNVEQGNKG- 61 Query: 64 KYSAENLK 71 A N+ Sbjct: 62 -PQAGNVT 68 >gi|51246052|ref|YP_065936.1| cold-shock protein [Desulfotalea psychrophila LSv54] gi|50877089|emb|CAG36929.1| probable cold-shock protein [Desulfotalea psychrophila LSv54] Length = 66 Score = 93.9 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E G DVF+H SA+ G +LTEG V ++ + + Sbjct: 1 MAEGTVKWFNDAKGFGFIEQE----GGQDVFVHYSAIGGEGFKSLTEGSRVNFEII-DGP 55 Query: 62 NGKYSAENLK 71 G + LK Sbjct: 56 KGPAADNVLK 65 >gi|13625473|gb|AAK35071.1|AF363392_1 cold acclimation protein CapB [Pseudomonas sp. 30/3] Length = 69 Score = 93.9 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V++ + Sbjct: 4 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIPSDGFKSLKEGQQVSFIATRGQK 59 Query: 62 NGKYSAENLKLV 73 AE ++++ Sbjct: 60 G--MQAEEVQVI 69 >gi|2493773|sp|P72192|TAPB_PSEFR RecName: Full=Temperature acclimation protein B; AltName: Full=E8.0 gi|1513086|gb|AAC46000.1| temperature acclimation protein B [Pseudomonas fragi] Length = 63 Score = 93.9 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59 Query: 62 N 62 Sbjct: 60 G 60 >gi|302546770|ref|ZP_07299112.1| putative cold shock protein [Streptomyces hygroscopicus ATCC 53653] gi|302464388|gb|EFL27481.1| putative cold shock protein [Streptomyces himastatinicus ATCC 53653] Length = 67 Score = 93.9 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MAAGTVKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--LTAENI 64 >gi|119944064|ref|YP_941744.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119862668|gb|ABM02145.1| cold shock protein E (CspE) [Psychromonas ingrahamii 37] Length = 68 Score = 93.9 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI SG DVF H SA++S G L EGQ V + Q Sbjct: 5 QGTVKWFNESKGFGFIEQ----ASGPDVFAHFSAISSEGFKTLAEGQKVEFTITQGQKG- 59 Query: 64 KYSAENLKLV 73 +AEN+ + Sbjct: 60 -PNAENIVAI 68 >gi|148547058|ref|YP_001267160.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida F1] gi|148511116|gb|ABQ77976.1| cold-shock DNA-binding protein family [Pseudomonas putida F1] Length = 88 Score = 93.9 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI EG ++ D+F H SA+ G L GQ V +D VQ Sbjct: 1 MASGKVKWFNNAKGYGFINEEGKSD---DLFAHYSAIRMDGYKTLKAGQAVVFDIVQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|257469649|ref|ZP_05633741.1| cold-shock domain-contain protein [Fusobacterium ulcerans ATCC 49185] gi|317063885|ref|ZP_07928370.1| cold-shock DNA-binding domain-containing protein [Fusobacterium ulcerans ATCC 49185] gi|313689561|gb|EFS26396.1| cold-shock DNA-binding domain-containing protein [Fusobacterium ulcerans ATCC 49185] Length = 66 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI+ E G+D F+H S + S G +L EGQ VT++ + + Sbjct: 1 MLKGTVKWFNKDKGFGFIS----GEDGNDYFVHYSNINSKGFRSLEEGQAVTFEVTEGNK 56 Query: 62 NGKYSAENLKL 72 A N+ + Sbjct: 57 G--PVASNVTV 65 >gi|160938316|ref|ZP_02085671.1| hypothetical protein CLOBOL_03212 [Clostridium bolteae ATCC BAA-613] gi|158438689|gb|EDP16446.1| hypothetical protein CLOBOL_03212 [Clostridium bolteae ATCC BAA-613] Length = 65 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V +D V N A G Sbjct: 2 KGTVKWFNNQKGYGFIS----DEQGNDVFVHYSGLNMDGFKSLDEGAEVEFDVV-NGAKG 56 Query: 64 KYSAENLKL 72 + KL Sbjct: 57 PQATNVTKL 65 >gi|94313078|ref|YP_586287.1| cold-shock DNA-binding domain-containing protein [Cupriavidus metallidurans CH34] gi|93356930|gb|ABF11018.1| cold-shock DNA-binding domain protein, anti-terminator of transcription [Cupriavidus metallidurans CH34] Length = 67 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H SA+ G +L EGQ V Y Sbjct: 1 METGTVKWFNDAKGFGFITPDA---GGNDLFAHFSAIEGNGFKSLKEGQKVRY-VKAMGQ 56 Query: 62 NGKYS 66 G+ + Sbjct: 57 KGEQA 61 >gi|227549517|ref|ZP_03979566.1| cold shock protein Csp [Corynebacterium lipophiloflavum DSM 44291] gi|227078394|gb|EEI16357.1| cold shock protein Csp [Corynebacterium lipophiloflavum DSM 44291] Length = 67 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI P + DVF+H S + +G NL E Q V Y V A Sbjct: 1 MAQGTVKWFNGDKGFGFIAP---NDGSTDVFVHFSEIQGSGYRNLEENQQVEY-VVGEGA 56 Query: 62 NGKYSAENLKL 72 G + + + L Sbjct: 57 KGPQAQQVVAL 67 >gi|83648221|ref|YP_436656.1| cold shock protein [Hahella chejuensis KCTC 2396] gi|83636264|gb|ABC32231.1| Cold shock protein [Hahella chejuensis KCTC 2396] Length = 69 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E SG DVF H SA+ S G LTEGQ V + + Sbjct: 6 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSAIVSNGFKTLTEGQQVEFTVAKGPKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -PQAENI 66 >gi|239627541|ref|ZP_04670572.1| cold-shock DNA-binding domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239517687|gb|EEQ57553.1| cold-shock DNA-binding domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 65 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V ++ V N A G Sbjct: 2 KGTVKWFNNQKGYGFIS----DEQGNDVFVHYSGLNMDGFKSLDEGAEVEFEVV-NGAKG 56 Query: 64 KYSAENLKL 72 + +L Sbjct: 57 PQATNVTRL 65 >gi|254522559|ref|ZP_05134614.1| cold-shock domain family protein [Stenotrophomonas sp. SKA14] gi|219720150|gb|EED38675.1| cold-shock domain family protein [Stenotrophomonas sp. SKA14] Length = 69 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI S ++G+DVF+H A+ + G +L EGQ VT++ VQ Sbjct: 4 RETGTVKWFNDAKGFGFI----SRQNGEDVFVHFRAIETHGFKSLKEGQSVTFEVVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++ V Sbjct: 60 G--LQADKVQPV 69 >gi|16129511|ref|NP_416070.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. MG1655] gi|89108394|ref|AP_002174.1| cold shock protein [Escherichia coli str. K-12 substr. W3110] gi|170020098|ref|YP_001725052.1| cold-shock DNA-binding domain-containing protein [Escherichia coli ATCC 8739] gi|170081220|ref|YP_001730540.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|191169221|ref|ZP_03030975.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|193066944|ref|ZP_03047913.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194436556|ref|ZP_03068657.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|218551648|ref|YP_002385440.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC 35469] gi|218554114|ref|YP_002387027.1| cold shock protein; Qin prophage [Escherichia coli IAI1] gi|218561575|ref|YP_002394488.1| cold shock protein; Qin prophage [Escherichia coli S88] gi|218699878|ref|YP_002407507.1| cold shock protein; Qin prophage [Escherichia coli IAI39] gi|218705054|ref|YP_002412573.1| cold shock protein; Qin prophage [Escherichia coli UMN026] gi|238900772|ref|YP_002926568.1| Qin prophage; cold shock protein [Escherichia coli BW2952] gi|254161612|ref|YP_003044720.1| cold shock protein [Escherichia coli B str. REL606] gi|256022767|ref|ZP_05436632.1| cold shock protein [Escherichia sp. 4_1_40B] gi|260855290|ref|YP_003229181.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368] gi|297521188|ref|ZP_06939574.1| cold shock protein; Qin prophage [Escherichia coli OP50] gi|300899658|ref|ZP_07117889.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300903922|ref|ZP_07121817.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300917740|ref|ZP_07134386.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300938341|ref|ZP_07153095.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|301025109|ref|ZP_07188703.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|301307308|ref|ZP_07213320.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|301326423|ref|ZP_07219775.1| transcriptional repressor activity CueR [Escherichia coli MS 78-1] gi|301647713|ref|ZP_07247506.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|307138206|ref|ZP_07497562.1| cold shock protein; Qin prophage [Escherichia coli H736] gi|307310883|ref|ZP_07590529.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|312969564|ref|ZP_07783747.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|331642140|ref|ZP_08343275.1| conserved domain protein [Escherichia coli H736] gi|331652930|ref|ZP_08353935.1| conserved domain protein [Escherichia coli M718] gi|331668007|ref|ZP_08368862.1| conserved domain protein [Escherichia coli TA271] gi|331673141|ref|ZP_08373909.1| conserved domain protein [Escherichia coli TA280] gi|331683057|ref|ZP_08383658.1| conserved domain protein [Escherichia coli H299] gi|71154170|sp|P0A987|CSPI_ECOL6 RecName: Full=Cold shock-like protein CspI; Short=CPS-I gi|71154171|sp|P0A986|CSPI_ECOLI RecName: Full=Cold shock-like protein CspI; Short=CPS-I gi|1742550|dbj|BAA15254.1| cold shock protein [Escherichia coli str. K12 substr. W3110] gi|1787834|gb|AAC74625.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. MG1655] gi|169755026|gb|ACA77725.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|169889055|gb|ACB02762.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|190900732|gb|EDV60527.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|192959534|gb|EDV89968.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194424588|gb|EDX40574.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|218359190|emb|CAQ91855.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC 35469] gi|218360882|emb|CAQ98452.1| cold shock protein; Qin prophage [Escherichia coli IAI1] gi|218368344|emb|CAR06163.1| cold shock protein; Qin prophage [Escherichia coli S88] gi|218369864|emb|CAR17638.1| cold shock protein; Qin prophage [Escherichia coli IAI39] gi|218432151|emb|CAR13039.1| cold shock protein; Qin prophage [Escherichia coli UMN026] gi|222033313|emb|CAP76053.1| Cold shock-like protein cspI [Escherichia coli LF82] gi|238863367|gb|ACR65365.1| Qin prophage; cold shock protein [Escherichia coli BW2952] gi|253973513|gb|ACT39184.1| cold shock protein [Escherichia coli B str. REL606] gi|257753939|dbj|BAI25441.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368] gi|260449326|gb|ACX39748.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|300356783|gb|EFJ72653.1| transcriptional repressor activity CueR [Escherichia coli MS 198-1] gi|300396218|gb|EFJ79756.1| transcriptional repressor activity CueR [Escherichia coli MS 69-1] gi|300404082|gb|EFJ87620.1| transcriptional repressor activity CueR [Escherichia coli MS 84-1] gi|300415017|gb|EFJ98327.1| transcriptional repressor activity CueR [Escherichia coli MS 115-1] gi|300456677|gb|EFK20170.1| transcriptional repressor activity CueR [Escherichia coli MS 21-1] gi|300837501|gb|EFK65261.1| transcriptional repressor activity CueR [Escherichia coli MS 124-1] gi|300846839|gb|EFK74599.1| transcriptional repressor activity CueR [Escherichia coli MS 78-1] gi|301074148|gb|EFK88954.1| transcriptional repressor activity CueR [Escherichia coli MS 146-1] gi|306909061|gb|EFN39557.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|310337849|gb|EFQ02938.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|312946155|gb|ADR26982.1| putative cold shock protein [Escherichia coli O83:H1 str. NRG 857C] gi|315060851|gb|ADT75178.1| Qin prophage; cold shock protein [Escherichia coli W] gi|315136193|dbj|BAJ43352.1| cold shock DNA-binding protein [Escherichia coli DH1] gi|315253268|gb|EFU33236.1| transcriptional repressor activity CueR [Escherichia coli MS 85-1] gi|320178969|gb|EFW53930.1| Cold shock protein CspI [Shigella boydii ATCC 9905] gi|320197740|gb|EFW72348.1| Cold shock protein CspI [Escherichia coli EC4100B] gi|320643970|gb|EFX13059.1| putative cold shock protein [Escherichia coli O157:H- str. 493-89] gi|320649396|gb|EFX17940.1| putative cold shock protein [Escherichia coli O157:H- str. H 2687] gi|320660357|gb|EFX27831.1| putative cold shock protein [Escherichia coli O55:H7 str. USDA 5905] gi|323156718|gb|EFZ42856.1| cold shock-like protein cspI [Escherichia coli EPECa14] gi|323378579|gb|ADX50847.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323942031|gb|EGB38209.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323947939|gb|EGB43934.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323962248|gb|EGB57839.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H489] gi|323973806|gb|EGB68980.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|331038938|gb|EGI11158.1| conserved domain protein [Escherichia coli H736] gi|331049028|gb|EGI21100.1| conserved domain protein [Escherichia coli M718] gi|331064749|gb|EGI36653.1| conserved domain protein [Escherichia coli TA271] gi|331069339|gb|EGI40726.1| conserved domain protein [Escherichia coli TA280] gi|331079272|gb|EGI50469.1| conserved domain protein [Escherichia coli H299] gi|332343261|gb|AEE56595.1| cold shock-like protein CspI [Escherichia coli UMNK88] Length = 70 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+NP+KG+GFITP + DVF+H SA+ S LTE Q V + +N G Sbjct: 6 TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQEVEFGI-ENGPKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PAAVHVVAL 70 >gi|289678192|ref|ZP_06499082.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae FF5] gi|330899515|gb|EGH30934.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. japonica str. M301072PT] gi|330938935|gb|EGH42434.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi str. 1704B] gi|330982632|gb|EGH80735.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 70 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59 Query: 62 NGKYSAENLK 71 A+ ++ Sbjct: 60 G--MQADEVQ 67 >gi|322419522|ref|YP_004198745.1| cold-shock DNA-binding domain-containing protein [Geobacter sp. M18] gi|320125909|gb|ADW13469.1| cold-shock DNA-binding domain protein [Geobacter sp. M18] Length = 66 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ E +G+DVF+H SA+ S G +LTEG VT++ V+ Sbjct: 1 MVNGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAINSDGFKSLTEGDSVTFEIVKG-P 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 KGLQAANV 63 >gi|145294296|ref|YP_001137117.1| hypothetical protein cgR_0252 [Corynebacterium glutamicum R] gi|140844216|dbj|BAF53215.1| hypothetical protein [Corynebacterium glutamicum R] Length = 67 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI P + D+F+H S + +G NL E QLV ++ + Sbjct: 1 MAQGTVKWFNGEKGFGFIAP---NDGSADLFVHYSEIQGSGFRNLEENQLVEFEVGEGAK 57 Query: 62 NGKYSAENLKLV 73 A+ ++ + Sbjct: 58 G--PQAQQVRAI 67 >gi|291285780|ref|YP_003502598.1| Cold shock-like protein cspI [Escherichia coli O55:H7 str. CB9615] gi|331666067|ref|ZP_08366961.1| conserved domain protein [Escherichia coli TA143] gi|331680509|ref|ZP_08381168.1| conserved domain protein [Escherichia coli H591] gi|290765653|gb|ADD59614.1| Cold shock-like protein cspI [Escherichia coli O55:H7 str. CB9615] gi|323190384|gb|EFZ75660.1| cold shock-like protein cspI [Escherichia coli RN587/1] gi|324112028|gb|EGC06006.1| cold-shock DNA-binding domain-containing protein [Escherichia fergusonii B253] gi|325499892|gb|EGC97751.1| Cold shock-like protein cspI [Escherichia fergusonii ECD227] gi|331057118|gb|EGI29112.1| conserved domain protein [Escherichia coli TA143] gi|331071972|gb|EGI43308.1| conserved domain protein [Escherichia coli H591] Length = 70 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+NP+KG+GFITP + DVF+H SA+ S LTE Q V + +N G Sbjct: 6 TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQQVEFGI-ENGPKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PAAVHVVAL 70 >gi|90023468|ref|YP_529295.1| cold-shock DNA-binding protein family protein [Saccharophagus degradans 2-40] gi|89953068|gb|ABD83083.1| cold-shock DNA-binding protein family [Saccharophagus degradans 2-40] Length = 86 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKG+GFITP + G D+F+H S + G L +GQ V ++ Q Sbjct: 19 MSKGTVKWFNADKGFGFITP---ADGGKDLFVHHSEIQAGGGYATLNDGQEVEFEVGQGQ 75 Query: 61 ANG 63 Sbjct: 76 KGP 78 >gi|51244787|ref|YP_064671.1| cold-shock protein (CspD) [Desulfotalea psychrophila LSv54] gi|50875824|emb|CAG35664.1| probable cold-shock protein (CspD) [Desulfotalea psychrophila LSv54] Length = 66 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI E GDD+F+H +++ ++G L EG V++D + Sbjct: 1 MAEGIVKWFNDAKGFGFI----DQEGGDDLFVHHTSINASGFKTLEEGARVSFDIEEGQ- 55 Query: 62 NGKYSAENLKL 72 G +A L Sbjct: 56 KGPAAANVTAL 66 >gi|326795949|ref|YP_004313769.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] gi|326546713|gb|ADZ91933.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] Length = 69 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF H SA+ +G L EGQ V + Q G Sbjct: 6 TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAITGSGFKTLAEGQKVEFTVGQG-PKG 60 Query: 64 KYSAENLKL 72 + + + L Sbjct: 61 PQAEDIVAL 69 >gi|209972098|gb|ACJ03560.1| cold shock protein [Bacillus thuringiensis serovar poloniensis] Length = 67 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N +KG+GFI G +DVF+H SA+ + G +L EGQ V+ + + + Sbjct: 1 MAVTGQVKWFNNEKGFGFIEVPGE----NDVFVHFSAIETEGFKSLEEGQKVSLEIEEGN 56 Query: 61 ANGKYSAENLKL 72 G + +KL Sbjct: 57 -RGPQAKNVIKL 67 >gi|91226269|ref|ZP_01261109.1| cold shock protein [Vibrio alginolyticus 12G01] gi|91189280|gb|EAS75559.1| cold shock protein [Vibrio alginolyticus 12G01] Length = 70 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 GS+KW+N +KG+GFIT + G D+F+H +++S G L EGQ V+++ V+ Sbjct: 4 RETGSVKWFNENKGFGFITKDS---DGKDIFVHFRSISSDGFKTLLEGQKVSFE-VEPGE 59 Query: 62 NGKYSAENLKLV 73 G + A N+ L+ Sbjct: 60 KGPH-ATNVALI 70 >gi|320105451|ref|YP_004181041.1| cold-shock DNA-binding domain-containing protein [Terriglobus saanensis SP1PR4] gi|319923972|gb|ADV81047.1| cold-shock DNA-binding domain protein [Terriglobus saanensis SP1PR4] Length = 66 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GF+ S +G+DVF+H +A+ S G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFL----SRANGEDVFVHHTAIQSNGFRSLQEGQNVQFNVVKGPK 56 Query: 62 NGKYSAENLKL 72 + AEN+++ Sbjct: 57 G--WQAENVQV 65 >gi|296134718|ref|YP_003641960.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12] gi|294338681|emb|CAZ87012.1| Cold shock protein [Thiomonas sp. 3As] gi|295794840|gb|ADG29630.1| cold-shock DNA-binding domain protein [Thiomonas intermedia K12] Length = 69 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI +G D+F+H S + G L E Q V ++ Q Sbjct: 3 MQTGAVKWFNESKGFGFIAQDGGD---ADLFVHFSEIQGNGFKTLAENQRVQFEVKQGPK 59 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 60 G--LQASNVTPL 69 >gi|322435623|ref|YP_004217835.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321163350|gb|ADW69055.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 89 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G + W+N KG+GFITPE G DVF+H SA+ G L EG V ++ Sbjct: 3 RQTGKVAWFNNGKGFGFITPET----GPDVFVHYSAIMLDGFKTLDEGDTVDFEIETGST 58 Query: 62 NGKYSAENLKL 72 + + ++L Sbjct: 59 GRPEARKVVRL 69 >gi|225874667|ref|YP_002756126.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] gi|225793793|gb|ACO33883.1| cold shock protein [Acidobacterium capsulatum ATCC 51196] Length = 87 Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KGYGFI +G+DVF+H SA+ +G L EG+ V ++ Q Sbjct: 22 ENGVVKWFNGAKGYGFIQ----RSTGEDVFVHFSAIQDSGYKTLNEGEAVEFECQQG-PK 76 Query: 63 GKYSAENLK 71 G +A ++ Sbjct: 77 GLNAANVVR 85 >gi|330873092|gb|EGH07241.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 70 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59 Query: 62 N 62 Sbjct: 60 G 60 >gi|307328240|ref|ZP_07607418.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306886074|gb|EFN17082.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 67 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI +G G DVF H S +A+ G L EGQ VT+D Sbjct: 1 MASGTVKWFNAAKGFGFIEQDG---GGADVFAHFSNIAAEGFRELLEGQKVTFDVAAGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|157364239|ref|YP_001471006.1| cold-shock DNA-binding domain-containing protein [Thermotoga lettingae TMO] gi|157314843|gb|ABV33942.1| putative cold-shock DNA-binding domain protein [Thermotoga lettingae TMO] Length = 66 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++P KGYGFIT + G DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 2 KGTVKWFDPKKGYGFIT----KQEGGDVFVHWSALEMDGFKTLKEGQEVEFEI-QDGPKG 56 Query: 64 KYSAENLKLV 73 +A +K+V Sbjct: 57 PQAAH-VKVV 65 >gi|118581708|ref|YP_902958.1| cold-shock DNA-binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504418|gb|ABL00901.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM 2379] Length = 66 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ E +G+DVF+H SA++ G +L EG VT++ V+ Sbjct: 1 MVNGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAISGEGFKSLAEGDSVTFELVKG-P 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 KGLQAANVTKI 66 >gi|253584039|ref|ZP_04861237.1| cold shock protein CspC [Fusobacterium varium ATCC 27725] gi|251834611|gb|EES63174.1| cold shock protein CspC [Fusobacterium varium ATCC 27725] Length = 66 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI+ E G+D F+H S + S G +L EGQ VT++ + + Sbjct: 1 MLKGTVKWFNKDKGFGFIS----GEDGNDYFVHYSNINSKGFRSLEEGQAVTFEVTEGEK 56 Query: 62 NGKYSAENLKL 72 A N+ + Sbjct: 57 G--PVASNVTV 65 >gi|94499669|ref|ZP_01306206.1| Cold shock protein [Oceanobacter sp. RED65] gi|94428423|gb|EAT13396.1| Cold shock protein [Oceanobacter sp. RED65] Length = 92 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI + E G+D+F H S++ G L GQ V +D +D Sbjct: 1 MQTGKVKWFNNAKGYGFILSD---EGGEDLFAHYSSIQVEGYKTLKAGQSVQFDTKPSDQ 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--THAINITPL 67 >gi|66044345|ref|YP_234186.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|302188384|ref|ZP_07265057.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae 642] gi|63255052|gb|AAY36148.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|330950944|gb|EGH51204.1| cold-shock protein, DNA-binding [Pseudomonas syringae Cit 7] gi|330969232|gb|EGH69298.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aceris str. M302273PT] Length = 70 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59 Query: 62 NGKYSAENLK 71 A+ ++ Sbjct: 60 G--MQADEVQ 67 >gi|322436511|ref|YP_004218723.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321164238|gb|ADW69943.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 70 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++G +KW+N KGYGF+ + G DVF H SAV + G +L EG V +D + D + Sbjct: 4 YKGQVKWFNNAKGYGFL----GRDGGSDVFCHYSAVQTDGYKSLKEGDEVEFDIIDGD-S 58 Query: 63 GKYSAENL 70 GK A+ + Sbjct: 59 GKPQADKV 66 >gi|297798314|ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp. lyrata] gi|297312877|gb|EFH43300.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp. lyrata] Length = 257 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + W+N KGYGFITP+ +E +F+H+S++ S G +L EG V + Q ++G Sbjct: 12 TGKVNWFNDSKGYGFITPDDRSEE---LFVHQSSIVSEGYRSLAEGDSVEFAITQG-SDG 67 Query: 64 KYSAENLKLV 73 K A + + Sbjct: 68 KTKAVEVTAL 77 >gi|262372451|ref|ZP_06065730.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] gi|262312476|gb|EEY93561.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] Length = 70 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G +KW+N KG+GFI GDDVF+H A+ G +L +GQ V + VQ Sbjct: 4 REQGVVKWFNDTKGFGFIQ----RNGGDDVFVHFRAIVGEGHRSLRDGQRVEFSVVQGQK 59 Query: 62 NGKYSAENLKLV 73 + AEN++ + Sbjct: 60 G--FQAENVQPL 69 >gi|225022302|ref|ZP_03711494.1| hypothetical protein CORMATOL_02341 [Corynebacterium matruchotii ATCC 33806] gi|224944899|gb|EEG26108.1| hypothetical protein CORMATOL_02341 [Corynebacterium matruchotii ATCC 33806] Length = 73 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFI PE + DVF+H S + G L E Q+V ++ D Sbjct: 6 MAKGAVKWFNAEKGFGFIEPE---DGSADVFVHYSEINGDGFRYLEENQVVEFEV--GDG 60 Query: 62 NGKYSAENLKLV 73 A N++++ Sbjct: 61 AKGTQALNVRVI 72 >gi|17986781|ref|NP_539415.1| cold shock protein CSPA [Brucella melitensis bv. 1 str. 16M] gi|148560167|ref|YP_001259392.1| cold-shock family protein [Brucella ovis ATCC 25840] gi|225627956|ref|ZP_03785992.1| cold shock protein CSPA [Brucella ceti str. Cudo] gi|237815906|ref|ZP_04594903.1| cold shock protein CSPA [Brucella abortus str. 2308 A] gi|297248787|ref|ZP_06932505.1| cold-shock family protein [Brucella abortus bv. 5 str. B3196] gi|306843139|ref|ZP_07475759.1| cold shock protein [Brucella sp. BO2] gi|17982411|gb|AAL51679.1| cold shock protein cspa [Brucella melitensis bv. 1 str. 16M] gi|148371424|gb|ABQ61403.1| cold-shock family protein [Brucella ovis ATCC 25840] gi|225617119|gb|EEH14165.1| cold shock protein CSPA [Brucella ceti str. Cudo] gi|237789204|gb|EEP63415.1| cold shock protein CSPA [Brucella abortus str. 2308 A] gi|297175956|gb|EFH35303.1| cold-shock family protein [Brucella abortus bv. 5 str. B3196] gi|306286662|gb|EFM58220.1| cold shock protein [Brucella sp. BO2] Length = 83 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N +KG+GFI P+ + G D+F+H SAV ++GL L + Q V+Y+ + Sbjct: 13 MAQTGQVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLPGLADNQKVSYETEPDR 69 Query: 61 ANGKYSAENLKL 72 A N+ + Sbjct: 70 RGKGPKAVNITI 81 >gi|257791070|ref|YP_003181676.1| cold-shock DNA-binding domain-containing protein [Eggerthella lenta DSM 2243] gi|317488206|ref|ZP_07946777.1| cold-shock' DNA-binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325830873|ref|ZP_08164257.1| cold shock protein CspD [Eggerthella sp. HGA1] gi|257474967|gb|ACV55287.1| cold-shock DNA-binding domain protein [Eggerthella lenta DSM 2243] gi|316912711|gb|EFV34249.1| cold-shock' DNA-binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325487280|gb|EGC89723.1| cold shock protein CspD [Eggerthella sp. HGA1] Length = 67 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW++ +KGYGFI+ E +G+D+F+H S + G +L E V + + + + Sbjct: 1 MSQGTVKWFSSEKGYGFISQE----NGEDLFVHFSEIQGDGYKSLDENAKVEF-VIASGS 55 Query: 62 NGKYSAENLKLV 73 NGK A + ++ Sbjct: 56 NGKSQATQVCVL 67 >gi|226313978|ref|YP_002773874.1| cold shock protein [Brevibacillus brevis NBRC 100599] gi|226096928|dbj|BAH45370.1| cold shock protein [Brevibacillus brevis NBRC 100599] Length = 68 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW++ +KGYGFI + G DVF+H SA+ AG NL EG+ V ++ V N Sbjct: 1 MIQGKVKWFSKEKGYGFIERD----GGPDVFVHYSAITGAGYRNLEEGEQVVFEIV-NGQ 55 Query: 62 NGKYSAENLKLV 73 G +A + V Sbjct: 56 RGLQAANVARKV 67 >gi|90581455|ref|ZP_01237249.1| putative Cold shock-like protein [Vibrio angustum S14] gi|90437316|gb|EAS62513.1| putative Cold shock-like protein [Vibrio angustum S14] Length = 70 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N +KG+GF+T + G DVF+H A+AS G L EGQ V++D Q Sbjct: 7 GLVKWFNEEKGFGFLTQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFDVEQGQKG-- 61 Query: 65 YSAENL 70 A N+ Sbjct: 62 LQAVNV 67 >gi|120554677|ref|YP_959028.1| cold-shock DNA-binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120324526|gb|ABM18841.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei VT8] Length = 103 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N KGYGFI +G ++ D+F H S+V G L GQ VT+D +D Sbjct: 1 MPRGKVKWFNNAKGYGFIIEDGCSD---DLFAHFSSVQMDGYKTLKAGQTVTFDKKPSDK 57 Query: 62 NGKYSAENLKLVPKS 76 + +VP Sbjct: 58 G----VHAINIVPDE 68 >gi|300925271|ref|ZP_07141166.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] gi|300418604|gb|EFK01915.1| transcriptional repressor activity CueR [Escherichia coli MS 182-1] Length = 71 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 1 MV---HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 M+ G +KW+NP+KG+GFITP + DVF+H SA+ S LTE Q V + Sbjct: 1 MMFNKMTGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQEVEFGI- 56 Query: 58 QNDANGKYSAENLKL 72 +N G + + L Sbjct: 57 ENGPKGPAAVHVVAL 71 >gi|253701491|ref|YP_003022680.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] gi|251776341|gb|ACT18922.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] Length = 66 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ E +GDDVF H SA+ G +L EG VT+D V+ Sbjct: 1 MANGTVKWFNDSKGFGFLEQE----NGDDVFCHFSAITGDGFKSLVEGDSVTFDVVKG-P 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGLQAANVTRV 66 >gi|148974863|ref|ZP_01811843.1| cold shock DNA-binding domain protein [Vibrionales bacterium SWAT-3] gi|145965372|gb|EDK30621.1| cold shock DNA-binding domain protein [Vibrionales bacterium SWAT-3] Length = 69 Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H SA+ G L EGQ V + Q Sbjct: 6 TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAITGEGFKTLAEGQKVEFVVSQGQKG- 60 Query: 64 KYSAENLKLV 73 A+++K++ Sbjct: 61 -PQADSIKVL 69 >gi|237799875|ref|ZP_04588336.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022730|gb|EGI02787.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. oryzae str. 1_6] Length = 70 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59 Query: 62 N 62 Sbjct: 60 G 60 >gi|329934360|ref|ZP_08284439.1| cold shock protein [Streptomyces griseoaurantiacus M045] gi|329305956|gb|EGG49811.1| cold shock protein [Streptomyces griseoaurantiacus M045] Length = 68 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI+ + G DVF H S + +G LTEG+ VT+D Q Sbjct: 1 MASGTVKWFNSEKGFGFISQ---NDGGPDVFAHYSEINGSGYRELTEGEQVTFDIGQGQK 57 Query: 62 NGKYSAENLK 71 A+N+ Sbjct: 58 G--PQAQNIT 65 >gi|326388755|ref|ZP_08210344.1| cold-shock DNA-binding domain protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206779|gb|EGD57607.1| cold-shock DNA-binding domain protein [Novosphingobium nitrogenifigens DSM 19370] Length = 68 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKGYGFI PE G+D F+H SAV AG+ L++ Q ++Y+ V+ D Sbjct: 1 MTIGTVKFFNTDKGYGFIAPE---NGGNDSFVHFSAVQQAGMATLSKDQRLSYE-VETDR 56 Query: 62 NGKYSAENL 70 GK SA NL Sbjct: 57 RGKQSAINL 65 >gi|50084936|ref|YP_046446.1| cold shock-like protein [Acinetobacter sp. ADP1] gi|49530912|emb|CAG68624.1| cold shock-like protein [Acinetobacter sp. ADP1] Length = 70 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI S++SG+DVF H S ++++G L EGQ V + V N G Sbjct: 6 QGTVKWFNETKGFGFI----SSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVV-NGKKG 60 Query: 64 KYSAENLKLVP 74 A N+ +V Sbjct: 61 -LQASNISIVK 70 >gi|297204693|ref|ZP_06922090.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|197710764|gb|EDY54798.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] Length = 67 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI +G G DVF H S +A+ G L EGQ VT+D Sbjct: 1 MASGTVKWFNAAKGFGFIEQDG---GGADVFAHFSNIAAQGFRELLEGQKVTFDIAAGQK 57 Query: 62 NGKYSAENLKL 72 +AEN+ L Sbjct: 58 G--PTAENIVL 66 >gi|254428424|ref|ZP_05042131.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881] gi|196194593|gb|EDX89552.1| 'Cold-shock' DNA-binding domain, putative [Alcanivorax sp. DG881] Length = 62 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFI+ + + G DVF+H SA+ +G L EGQ V+++ Q G + Sbjct: 1 MKWFNESKGFGFISQD---DGGADVFVHFSAITGSGFKTLAEGQKVSFEIQQG-PKGPQA 56 Query: 67 AENL 70 A + Sbjct: 57 ANVV 60 >gi|45443632|ref|NP_995171.1| major cold shock protein Cspa1 [Yersinia pestis biovar Microtus str. 91001] gi|145597567|ref|YP_001161643.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides F] gi|153997418|ref|ZP_02022518.1| major cold shock protein Cspa1 [Yersinia pestis CA88-4125] gi|162420218|ref|YP_001605761.1| cold shock DNA-binding domain-containing protein [Yersinia pestis Angola] gi|165927555|ref|ZP_02223387.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165937557|ref|ZP_02226120.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166012240|ref|ZP_02233138.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214174|ref|ZP_02240209.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167401977|ref|ZP_02307460.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420574|ref|ZP_02312327.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425550|ref|ZP_02317303.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022695|ref|YP_001719200.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|218930654|ref|YP_002348529.1| major cold shock protein Cspa1 [Yersinia pestis CO92] gi|229836787|ref|ZP_04456952.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides A] gi|229839313|ref|ZP_04459472.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899877|ref|ZP_04515018.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis str. India 195] gi|229904188|ref|ZP_04519299.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516] gi|270488627|ref|ZP_06205701.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|45438502|gb|AAS64048.1| major cold shock protein Cspa1 [Yersinia pestis biovar Microtus str. 91001] gi|115349265|emb|CAL22232.1| major cold shock protein Cspa1 [Yersinia pestis CO92] gi|145209263|gb|ABP38670.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|149289055|gb|EDM39135.1| major cold shock protein Cspa1 [Yersinia pestis CA88-4125] gi|162353033|gb|ABX86981.1| cold shock DNA-binding domain protein [Yersinia pestis Angola] gi|165914662|gb|EDR33276.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920449|gb|EDR37726.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165988859|gb|EDR41160.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204661|gb|EDR49141.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961380|gb|EDR57401.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048563|gb|EDR59971.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055564|gb|EDR65357.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749229|gb|ACA66747.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|229678306|gb|EEO74411.1| major cold shock protein Cspa1 [Yersinia pestis Nepal516] gi|229687369|gb|EEO79444.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis str. India 195] gi|229695679|gb|EEO85726.1| major cold shock protein Cspa1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705730|gb|EEO91739.1| major cold shock protein Cspa1 [Yersinia pestis Pestoides A] gi|270337131|gb|EFA47908.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|320017193|gb|ADW00765.1| major cold shock protein Cspa1 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 70 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVIAL 70 >gi|307107761|gb|EFN56003.1| hypothetical protein CHLNCDRAFT_145396 [Chlorella variabilis] Length = 301 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 3/62 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFIT E S + VF+H+S + + G +L EG+ V +D V D K Sbjct: 15 GTVKWFNSTKGYGFITCEESEDE---VFVHQSNIETTGYRSLKEGEEVEFDLVVADDGKK 71 Query: 65 YS 66 + Sbjct: 72 KA 73 >gi|91200723|emb|CAJ73775.1| strongly similar to cold shock protein CspB [Candidatus Kuenenia stuttgartiensis] Length = 66 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+ E +G DVF+H++++ S G L EG V +D + +D Sbjct: 1 MANGTVKWFNDSKGFGFISQE----NGTDVFVHQTSIKSEGFRTLAEGDKVEFDVI-SDQ 55 Query: 62 NGKYSAENLKL 72 G+ + +K+ Sbjct: 56 KGQKATNVVKV 66 >gi|120554260|ref|YP_958611.1| cold-shock DNA-binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120324109|gb|ABM18424.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei VT8] Length = 68 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT E G DVF+H SA+ G L EGQ V + Q Sbjct: 5 TGTVKFFNESKGFGFITRE----GGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTQGQKG- 59 Query: 64 KYSAENL 70 AEN+ Sbjct: 60 -PQAENV 65 >gi|187251844|ref|YP_001876326.1| cold-shock DNA-binding domain-containing protein [Elusimicrobium minutum Pei191] gi|186972004|gb|ACC98989.1| Cold-shock DNA-binding domain protein [Elusimicrobium minutum Pei191] Length = 67 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G IKW+N KGYGF+TPE + D+F+H + G L EGQ V +D +++ Sbjct: 1 MAQGKIKWFNDQKGYGFVTPE---DGSADLFVHYQEIQGEGFKTLAEGQAVEFDVAKSEK 57 Query: 62 NGKYSAENLKLV 73 K A N++ + Sbjct: 58 GPK--ATNVRKI 67 >gi|302386621|ref|YP_003822443.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] gi|302197249|gb|ADL04820.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] Length = 65 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V +D V + A G Sbjct: 2 KGTVKWFNNQKGYGFIS----DEQGNDVFVHYSGLNMDGFKSLDEGAAVEFDVV-DGAKG 56 Query: 64 KYSAENLKL 72 + K+ Sbjct: 57 PQATNVTKI 65 >gi|261252479|ref|ZP_05945052.1| cold shock protein CspD [Vibrio orientalis CIP 102891] gi|260935870|gb|EEX91859.1| cold shock protein CspD [Vibrio orientalis CIP 102891] Length = 73 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI EG DVF H S + G L GQ V ++ + Sbjct: 1 MATGTVKWFNNAKGFGFICSEGED---GDVFAHYSTIKMDGYRTLKAGQQVNFEVEEGPK 57 Query: 62 NGKYSAENLKLVPKS 76 Y A + V Sbjct: 58 G--YHASVVTPVEAQ 70 >gi|229823948|ref|ZP_04450017.1| hypothetical protein GCWU000282_01252 [Catonella morbi ATCC 51271] gi|229786302|gb|EEP22416.1| hypothetical protein GCWU000282_01252 [Catonella morbi ATCC 51271] Length = 90 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKG+GFI + G DVF+H S + + G L EGQ V+YD VQ + Sbjct: 25 MLNGTVKFFNVDKGFGFIA----GQDGVDVFVHFSNIQADGFKTLNEGQTVSYD-VQETS 79 Query: 62 NGKYSAENLKL 72 G + + + Sbjct: 80 RGLQAINVVAI 90 >gi|218780562|ref|YP_002431880.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761946|gb|ACL04412.1| cold-shock DNA-binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 69 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI E G DVF+H SA+ G +L EGQ V + VQ Sbjct: 4 REMGTVKWFNDKKGFGFIERE----EGGDVFVHYSAIVGNGFRSLAEGQKVEFTVVQGAK 59 Query: 62 NGKYSAENLK 71 +AE + Sbjct: 60 G--PAAEEVS 67 >gi|257056878|ref|YP_003134710.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] gi|256586750|gb|ACU97883.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] Length = 67 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P+G G DVF+H S + G +L +GQ V + Q A Sbjct: 1 MAEGTVKWFNSEKGFGFIAPDG---GGADVFVHYSEIDGRGFRSLEDGQRVVFTVGQG-A 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPQA 61 >gi|222099844|ref|YP_002534412.1| Cold shock-like protein [Thermotoga neapolitana DSM 4359] gi|221572234|gb|ACM23046.1| Cold shock-like protein [Thermotoga neapolitana DSM 4359] Length = 66 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++ KGYGFIT + G DVF+H SA+ G L EGQ+V ++ VQ G Sbjct: 2 RGKVKWFDAKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFE-VQEGKKG 56 Query: 64 KYSAEN 69 +A Sbjct: 57 PQAAHV 62 >gi|108803028|ref|YP_642965.1| cold-shock DNA-binding protein family protein [Rubrobacter xylanophilus DSM 9941] gi|108764271|gb|ABG03153.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus DSM 9941] Length = 67 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW++ +KGYGFI+P+ + +D+F+H + + G L EG V+Y+ + Sbjct: 1 MAQGTVKWFSDEKGYGFISPD---DGSEDLFVHYTGIEGTGFKTLEEGARVSYETTRGRK 57 Query: 62 NGKYSAENLKLV 73 A + + Sbjct: 58 G--MQAVKVSRI 67 >gi|323169843|gb|EFZ55499.1| cold shock-like protein cspI [Escherichia coli LT-68] Length = 66 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+NP+KG+GFITP + DVF+H SA+ S LTE Q V + +N G Sbjct: 2 TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQEVEFGI-ENGPKG 57 Query: 64 KYSAENLKL 72 + + L Sbjct: 58 PAAVHVVAL 66 >gi|310780205|ref|YP_003968537.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] gi|309749528|gb|ADO84189.1| cold-shock DNA-binding protein family [Ilyobacter polytropus DSM 2926] Length = 66 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFIT +E G DVF+H S + G L EG+ VT++ Q Sbjct: 1 MVNGTVKWFNQEKGFGFIT----SEDGTDVFVHFSQINKPGFKTLEEGEQVTFEITQGQK 56 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 57 G--PQASNVT 64 >gi|226941142|ref|YP_002796216.1| hypothetical protein LHK_02223 [Laribacter hongkongensis HLHK9] gi|226716069|gb|ACO75207.1| cold-shock domain family protein [Laribacter hongkongensis HLHK9] Length = 69 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KG+GFI+P+ GDD+F H + + + G L EG+ VT++ Sbjct: 4 QTGTVKWFNETKGFGFISPDA---GGDDLFAHFTEIQTKGFRTLAEGERVTFETKMGPKG 60 Query: 63 GKYSAENLK 71 +A N++ Sbjct: 61 --VAAANIQ 67 >gi|153008980|ref|YP_001370195.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151560868|gb|ABS14366.1| putative cold-shock DNA-binding domain protein [Ochrobactrum anthropi ATCC 49188] Length = 71 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N +KG+GFI P+ + G D+F+H SAV ++GL L + Q V+Y+ + Sbjct: 1 MAQTGLVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLTGLADNQKVSYETEPDR 57 Query: 61 ANGKYSAENLKL 72 A N+ + Sbjct: 58 RGKGPKAVNITV 69 >gi|149195695|ref|ZP_01872752.1| putative cold-shock DNA-binding domain protein [Lentisphaera araneosa HTCC2155] gi|149141157|gb|EDM29553.1| putative cold-shock DNA-binding domain protein [Lentisphaera araneosa HTCC2155] Length = 67 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+ DKG+GFITP D+F+H + + + G +L EGQ V Y+ Q Sbjct: 1 METGTVKWFADDKGFGFITPNSGD---KDLFVHHTEIQTGGFKSLAEGQKVEYEVGQGQK 57 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 58 G--PCATNVTPL 67 >gi|254244622|ref|ZP_04937944.1| hypothetical protein PA2G_05489 [Pseudomonas aeruginosa 2192] gi|37955684|gb|AAP22523.1| CspA [Pseudomonas aeruginosa] gi|126198000|gb|EAZ62063.1| hypothetical protein PA2G_05489 [Pseudomonas aeruginosa 2192] Length = 69 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFITPE SG DVF+H + ++G +L EGQ V++ +V A Sbjct: 4 RQTGTVKWFNEVKGFGFITPE----SGADVFVHFRQIEASGYKSLDEGQRVSF-FVTAGA 58 Query: 62 NGKYSAENLKLV 73 G AE ++ + Sbjct: 59 KGPQ-AEQVQAL 69 >gi|108809647|ref|YP_653563.1| major cold shock protein Cspa2 [Yersinia pestis Antiqua] gi|108813687|ref|YP_649454.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516] gi|145597566|ref|YP_001161642.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides F] gi|153948953|ref|YP_001399367.1| cold shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|153997419|ref|ZP_02022519.1| major cold shock protein Cspa2 [Yersinia pestis CA88-4125] gi|162421711|ref|YP_001605762.1| cold shock DNA-binding domain-containing protein [Yersinia pestis Angola] gi|165927588|ref|ZP_02223420.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165937409|ref|ZP_02225972.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166012234|ref|ZP_02233132.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214132|ref|ZP_02240167.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167401979|ref|ZP_02307462.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420637|ref|ZP_02312390.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425433|ref|ZP_02317186.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218930653|ref|YP_002348528.1| major cold shock protein Cspa2 [Yersinia pestis CO92] gi|229836786|ref|ZP_04456951.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides A] gi|229839314|ref|ZP_04459473.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899878|ref|ZP_04515019.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis str. India 195] gi|229904189|ref|ZP_04519300.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516] gi|270488628|ref|ZP_06205702.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|2275140|emb|CAB10779.1| hypothetical protein [Yersinia pestis] gi|108777335|gb|ABG19854.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108781560|gb|ABG15618.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] gi|115349264|emb|CAL22231.1| major cold shock protein Cspa2 [Yersinia pestis CO92] gi|145209262|gb|ABP38669.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|149289056|gb|EDM39136.1| major cold shock protein Cspa2 [Yersinia pestis CA88-4125] gi|152960448|gb|ABS47909.1| 'Cold-shock' DNA-binding domain [Yersinia pseudotuberculosis IP 31758] gi|162354526|gb|ABX88474.1| cold shock DNA-binding domain protein [Yersinia pestis Angola] gi|165914514|gb|EDR33128.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920482|gb|EDR37759.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165988853|gb|EDR41154.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204619|gb|EDR49099.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961443|gb|EDR57464.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048565|gb|EDR59973.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055447|gb|EDR65240.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678307|gb|EEO74412.1| major cold shock protein Cspa2 [Yersinia pestis Nepal516] gi|229687370|gb|EEO79445.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis str. India 195] gi|229695680|gb|EEO85727.1| major cold shock protein Cspa2 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705729|gb|EEO91738.1| major cold shock protein Cspa2 [Yersinia pestis Pestoides A] gi|270337132|gb|EFA47909.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|320017194|gb|ADW00766.1| major cold shock protein Cspa2 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 70 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PAAVNVIAL 70 >gi|26988254|ref|NP_743679.1| cold shock protein CspA [Pseudomonas putida KT2440] gi|148549408|ref|YP_001269510.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida F1] gi|167032140|ref|YP_001667371.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida GB-1] gi|325278118|ref|ZP_08143630.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] gi|24982997|gb|AAN67143.1|AE016343_3 cold shock protein CspA [Pseudomonas putida KT2440] gi|148513466|gb|ABQ80326.1| cold-shock DNA-binding protein family [Pseudomonas putida F1] gi|166858628|gb|ABY97035.1| cold-shock DNA-binding domain protein [Pseudomonas putida GB-1] gi|313500255|gb|ADR61621.1| CspA [Pseudomonas putida BIRD-1] gi|324096743|gb|EGB95077.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] Length = 69 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFI E G DVF+H A+ G L EGQ V Y VQ Sbjct: 4 RETGNVKWFNDAKGYGFIQRE----GGADVFVHYRAIRGEGHRTLVEGQRVEYACVQGQK 59 Query: 62 NGKYSAENL 70 AE++ Sbjct: 60 G--LQAEDV 66 >gi|291280012|ref|YP_003496847.1| cold shock protein [Deferribacter desulfuricans SSM1] gi|290754714|dbj|BAI81091.1| cold shock protein [Deferribacter desulfuricans SSM1] Length = 66 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFIT ++G DVF+H +++ G +L EG+ V ++ V+ Sbjct: 1 MREGTVKWFNDSKGYGFIT----EDNGQDVFVHHTSIQKDGFKSLAEGERVKFE-VEKSP 55 Query: 62 NGKYSAENLKL 72 G + + L Sbjct: 56 KGLAAINVVSL 66 >gi|331006239|ref|ZP_08329559.1| Cold shock protein CspE [gamma proteobacterium IMCC1989] gi|330419928|gb|EGG94274.1| Cold shock protein CspE [gamma proteobacterium IMCC1989] Length = 69 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF H SA+ S G L EGQ V + V + G Sbjct: 6 TGTVKWFNESKGFGFIEQE----SGPDVFAHFSAIVSDGFKTLMEGQKVQF-VVTDGQKG 60 Query: 64 KYSAENLKL 72 + + + Sbjct: 61 PQAENIVAI 69 >gi|293375456|ref|ZP_06621737.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis PC909] gi|325836869|ref|ZP_08166275.1| cold shock-like protein CspG [Turicibacter sp. HGF1] gi|292646009|gb|EFF64038.1| cold-shock DNA-binding domain protein [Turicibacter sanguinis PC909] gi|325491115|gb|EGC93406.1| cold shock-like protein CspG [Turicibacter sp. HGF1] Length = 66 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFIT E+G DVF+H SA+ + G L EGQ VT++ + Sbjct: 2 KGTVKWFNEEKGFGFIT----AENGSDVFVHFSAIKADGFKRLEEGQKVTFETAEGQRG- 56 Query: 64 KYSAENLKL 72 A+N+ + Sbjct: 57 -LQAQNVVV 64 >gi|148652578|ref|YP_001279671.1| cold-shock DNA-binding domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571662|gb|ABQ93721.1| cold-shock DNA-binding protein family [Psychrobacter sp. PRwf-1] Length = 71 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G++KW+N KG+GFI E SG+D+F+H A+ G +L +GQ V + V Sbjct: 4 REQGTVKWFNDAKGFGFIQRE----SGEDIFVHFRAIQGDGYRSLQDGQKVEF-IVTEGE 58 Query: 62 NGKYSAENLKL 72 G + E K+ Sbjct: 59 KGLQAEEVTKV 69 >gi|320139464|gb|EFW31338.1| cold-shock DNA-binding domain protein [Staphylococcus aureus subsp. aureus MRSA131] Length = 66 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E +G+DVF+H S + G +L +GQ V +D V + Sbjct: 1 MNNGTVKWFNSEKGFGFIERE----NGNDVFVHFSNIVGEGYKSLEDGQSVDFDIV-DGQ 55 Query: 62 NGKYSAENLKL 72 G+ + + + Sbjct: 56 RGEQATNVVAV 66 >gi|126664472|ref|ZP_01735456.1| cold-shock DNA-binding domain family protein [Marinobacter sp. ELB17] gi|126630798|gb|EBA01412.1| cold-shock DNA-binding domain family protein [Marinobacter sp. ELB17] Length = 68 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT E G DVF+H S++ G L EGQ V + Q Sbjct: 5 TGTVKFFNEAKGFGFITRE----GGPDVFVHYSSIQGGGFKTLAEGQQVEFTVTQGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ V Sbjct: 60 -PQAENVVAV 68 >gi|119947299|ref|YP_944979.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119865903|gb|ABM05380.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 69 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI SG DVF H SA+AS G L EGQ V + Q Sbjct: 6 QGTVKWFNEAKGFGFIEQ----ASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKGP 61 Query: 64 K 64 + Sbjct: 62 Q 62 >gi|77362295|ref|YP_341869.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125] gi|76877206|emb|CAI89423.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125] Length = 69 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI E SG DVF H SA++ G L EGQ V + Q Sbjct: 6 TGSVKWFNEAKGFGFIEQE----SGADVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 61 -PQAENIVAI 69 >gi|328955745|ref|YP_004373078.1| cold-shock DNA-binding protein family [Coriobacterium glomerans PW2] gi|328456069|gb|AEB07263.1| cold-shock DNA-binding protein family [Coriobacterium glomerans PW2] Length = 76 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 2 VHRGSIK-WYNPDKGYGFITPEGSTESGD--DVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G++K + +KGYGFITP+ + E G DVF+H SA+ G +L EG V ++ + Sbjct: 1 MATGTLKKSFFREKGYGFITPDDAPEDGSKSDVFVHFSALQMDGFKSLDEGDRVEFELGE 60 Query: 59 NDANGKYSAENLKLV 73 G+ A N++ + Sbjct: 61 GKKPGETQAINVRKI 75 >gi|325106571|ref|YP_004267647.1| putative cold-shock protein C [Staphylococcus simulans bv. staphylolyticus] gi|324033744|gb|ADY16745.1| putative cold-shock protein C [Staphylococcus simulans bv. staphylolyticus] Length = 66 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N +KG+GFI E +G DVF+H S +A G +L +GQ V +D V + Sbjct: 1 MNNGTVKWFNSEKGFGFIERE----NGSDVFVHFSGIAGEGYKSLEDGQNVDFDIV-DGQ 55 Query: 62 NGKYSAENLKL 72 G+ + + + Sbjct: 56 RGEQATNVVAI 66 >gi|266625124|ref|ZP_06118059.1| conserved domain protein [Clostridium hathewayi DSM 13479] gi|288862975|gb|EFC95273.1| conserved domain protein [Clostridium hathewayi DSM 13479] Length = 65 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFI+ E G+DVF+H S + G +L EG V +D V + A G Sbjct: 2 KGTVKWFNNQKGYGFIS----DEQGNDVFVHYSGLNMDGFKSLDEGASVEFDVV-DGAKG 56 Query: 64 KYSAENLKL 72 + KL Sbjct: 57 PQAVNVTKL 65 >gi|227355251|ref|ZP_03839653.1| CspA family cold shock transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227164624|gb|EEI49491.1| CspA family cold shock transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 66 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW++ KG+GFITP + DVF+H SA+ S L EGQ V++ +N G Sbjct: 2 TGTVKWFDEGKGFGFITP---ADGSKDVFVHFSAIQSDNFKTLAEGQQVSFTM-ENGMKG 57 Query: 64 KYSAENLKL 72 + + L Sbjct: 58 PAAGNVVAL 66 >gi|197118603|ref|YP_002139030.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|253700626|ref|YP_003021815.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] gi|197087963|gb|ACH39234.1| cold shock DNA/RNA-binding protein [Geobacter bemidjiensis Bem] gi|251775476|gb|ACT18057.1| cold-shock DNA-binding domain protein [Geobacter sp. M21] Length = 66 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ E +G+DVF+H SA+ G +LTEG VT++ V+ Sbjct: 1 MVNGTVKWFNDSKGFGFLEQE----NGEDVFVHFSAINGDGFKSLTEGDSVTFEIVKG-P 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 KGLQAANV 63 >gi|152997623|ref|YP_001342458.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150838547|gb|ABR72523.1| putative cold-shock DNA-binding domain protein [Marinomonas sp. MWYL1] Length = 69 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT + G DVF+H SA+ ++G L EGQ V + Q G Sbjct: 6 TGTVKFFNETKGFGFITQDQ----GPDVFVHFSAINTSGFKTLAEGQKVEFQVAQG-KKG 60 Query: 64 KYSAENLKLV 73 A+N+ + Sbjct: 61 PE-AQNVTPL 69 >gi|88859394|ref|ZP_01134034.1| Cold shock protein [Pseudoalteromonas tunicata D2] gi|88818411|gb|EAR28226.1| Cold shock protein [Pseudoalteromonas tunicata D2] Length = 69 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI SG DVF H SA++ G L EGQ V + + Sbjct: 6 TGTVKWFNEAKGFGFIEQ----ASGPDVFAHFSAISGDGFKTLAEGQKVQFVVTKGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 61 -PQAENIVVL 69 >gi|116051280|ref|YP_789888.1| cold acclimation protein B [Pseudomonas aeruginosa UCBPP-PA14] gi|152985784|ref|YP_001347238.1| cold acclimation protein B [Pseudomonas aeruginosa PA7] gi|254241955|ref|ZP_04935277.1| cold acclimation protein B [Pseudomonas aeruginosa 2192] gi|296388237|ref|ZP_06877712.1| cold acclimation protein B [Pseudomonas aeruginosa PAb1] gi|313108607|ref|ZP_07794608.1| cold acclimation protein B [Pseudomonas aeruginosa 39016] gi|115586501|gb|ABJ12516.1| cold acclimation protein B [Pseudomonas aeruginosa UCBPP-PA14] gi|126195333|gb|EAZ59396.1| cold acclimation protein B [Pseudomonas aeruginosa 2192] gi|150960942|gb|ABR82967.1| cold acclimation protein B [Pseudomonas aeruginosa PA7] gi|310881110|gb|EFQ39704.1| cold acclimation protein B [Pseudomonas aeruginosa 39016] Length = 69 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFITPE SG+D+F+H ++ G +L EGQ V++ V Sbjct: 4 RQNGTVKWFNDAKGFGFITPE----SGNDLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++++ Sbjct: 60 G--LQADEVQVI 69 >gi|289665681|ref|ZP_06487262.1| major cold shock protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289671305|ref|ZP_06492380.1| major cold shock protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 69 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGIVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++ V Sbjct: 60 G--MQADQVQAV 69 >gi|90415487|ref|ZP_01223421.1| Cold shock protein [marine gamma proteobacterium HTCC2207] gi|90332810|gb|EAS47980.1| Cold shock protein [marine gamma proteobacterium HTCC2207] Length = 69 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E G DVF+H SA+ + G +L EGQ VT + Q Sbjct: 7 GTVKWFNDSKGFGFIEQE----GGGDVFVHHSAIQADGFKSLKEGQAVTMEVTQGQKG-- 60 Query: 65 YSAENL 70 AEN+ Sbjct: 61 AQAENV 66 >gi|23502382|ref|NP_698509.1| cold-shock family protein [Brucella suis 1330] gi|62290402|ref|YP_222195.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|82700324|ref|YP_414898.1| cold shock DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|161619460|ref|YP_001593347.1| hypothetical protein BCAN_A1551 [Brucella canis ATCC 23365] gi|163843768|ref|YP_001628172.1| hypothetical protein BSUIS_A1571 [Brucella suis ATCC 23445] gi|189024628|ref|YP_001935396.1| Cold-shock DNA-binding domain protein [Brucella abortus S19] gi|225852991|ref|YP_002733224.1| hypothetical protein BMEA_A1565 [Brucella melitensis ATCC 23457] gi|254689700|ref|ZP_05152954.1| cold-shock family protein [Brucella abortus bv. 6 str. 870] gi|254694190|ref|ZP_05156018.1| cold-shock family protein [Brucella abortus bv. 3 str. Tulya] gi|254697843|ref|ZP_05159671.1| cold-shock family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254702232|ref|ZP_05164060.1| cold-shock family protein [Brucella suis bv. 5 str. 513] gi|254704767|ref|ZP_05166595.1| cold-shock family protein [Brucella suis bv. 3 str. 686] gi|254708180|ref|ZP_05170008.1| cold-shock family protein [Brucella pinnipedialis M163/99/10] gi|254710551|ref|ZP_05172362.1| cold-shock family protein [Brucella pinnipedialis B2/94] gi|254714734|ref|ZP_05176545.1| cold-shock family protein [Brucella ceti M644/93/1] gi|254717794|ref|ZP_05179605.1| cold-shock family protein [Brucella ceti M13/05/1] gi|254719549|ref|ZP_05181360.1| cold-shock family protein [Brucella sp. 83/13] gi|254730734|ref|ZP_05189312.1| cold-shock family protein [Brucella abortus bv. 4 str. 292] gi|256032045|ref|ZP_05445659.1| cold-shock family protein [Brucella pinnipedialis M292/94/1] gi|256045136|ref|ZP_05448036.1| cold-shock family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256061567|ref|ZP_05451709.1| cold-shock family protein [Brucella neotomae 5K33] gi|256114072|ref|ZP_05454842.1| cold-shock family protein [Brucella melitensis bv. 3 str. Ether] gi|256160241|ref|ZP_05457935.1| cold-shock family protein [Brucella ceti M490/95/1] gi|256255447|ref|ZP_05460983.1| cold-shock family protein [Brucella ceti B1/94] gi|256257951|ref|ZP_05463487.1| cold-shock family protein [Brucella abortus bv. 9 str. C68] gi|256263527|ref|ZP_05466059.1| cold-shock family protein [Brucella melitensis bv. 2 str. 63/9] gi|256369930|ref|YP_003107441.1| cold-shock family protein [Brucella microti CCM 4915] gi|260169180|ref|ZP_05755991.1| cold-shock family protein [Brucella sp. F5/99] gi|260546939|ref|ZP_05822678.1| cold-shock DNA-binding domain-containing protein [Brucella abortus NCTC 8038] gi|260565265|ref|ZP_05835749.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260565989|ref|ZP_05836459.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|260755234|ref|ZP_05867582.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260758454|ref|ZP_05870802.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260762280|ref|ZP_05874623.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884248|ref|ZP_05895862.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261214497|ref|ZP_05928778.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261219643|ref|ZP_05933924.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M13/05/1] gi|261222653|ref|ZP_05936934.1| cold-shock DNA-binding domain-containing protein [Brucella ceti B1/94] gi|261315687|ref|ZP_05954884.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261318125|ref|ZP_05957322.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261322531|ref|ZP_05961728.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M644/93/1] gi|261325575|ref|ZP_05964772.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae 5K33] gi|261752805|ref|ZP_05996514.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261755464|ref|ZP_05999173.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|261758694|ref|ZP_06002403.1| cold-shock DNA-binding domain-containing protein [Brucella sp. F5/99] gi|261885343|ref|ZP_06009382.1| cold-shock family protein [Campylobacter fetus subsp. venerealis str. Azul-94] gi|265984558|ref|ZP_06097293.1| cold-shock DNA-binding domain-containing protein [Brucella sp. 83/13] gi|265989155|ref|ZP_06101712.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265991570|ref|ZP_06104127.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995406|ref|ZP_06107963.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|265998617|ref|ZP_06111174.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M490/95/1] gi|294852832|ref|ZP_06793505.1| major cold shock protein [Brucella sp. NVSL 07-0026] gi|306838489|ref|ZP_07471330.1| cold shock protein [Brucella sp. NF 2653] gi|306844515|ref|ZP_07477104.1| cold shock protein [Brucella sp. BO1] gi|23348366|gb|AAN30424.1| cold-shock family protein [Brucella suis 1330] gi|62196534|gb|AAX74834.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|82616425|emb|CAJ11488.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus 2308] gi|161336271|gb|ABX62576.1| Hypothetical protein BCAN_A1551 [Brucella canis ATCC 23365] gi|163674491|gb|ABY38602.1| Hypothetical protein BSUIS_A1571 [Brucella suis ATCC 23445] gi|189020200|gb|ACD72922.1| Cold-shock DNA-binding domain protein [Brucella abortus S19] gi|225641356|gb|ACO01270.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|256000093|gb|ACU48492.1| cold-shock family protein [Brucella microti CCM 4915] gi|260095989|gb|EEW79866.1| cold-shock DNA-binding domain-containing protein [Brucella abortus NCTC 8038] gi|260151333|gb|EEW86427.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260155507|gb|EEW90587.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|260668772|gb|EEX55712.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672712|gb|EEX59533.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675342|gb|EEX62163.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260873776|gb|EEX80845.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260916104|gb|EEX82965.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260921237|gb|EEX87890.1| cold-shock DNA-binding domain-containing protein [Brucella ceti B1/94] gi|260924732|gb|EEX91300.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M13/05/1] gi|261295221|gb|EEX98717.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M644/93/1] gi|261297348|gb|EEY00845.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261301555|gb|EEY05052.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae 5K33] gi|261304713|gb|EEY08210.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261738678|gb|EEY26674.1| cold-shock DNA-binding domain-containing protein [Brucella sp. F5/99] gi|261742558|gb|EEY30484.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261745217|gb|EEY33143.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|262553241|gb|EEZ09075.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M490/95/1] gi|262766519|gb|EEZ12308.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263002354|gb|EEZ14929.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093556|gb|EEZ17581.1| cold-shock family protein [Brucella melitensis bv. 2 str. 63/9] gi|264661352|gb|EEZ31613.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|264663150|gb|EEZ33411.1| cold-shock DNA-binding domain-containing protein [Brucella sp. 83/13] gi|294821421|gb|EFG38420.1| major cold shock protein [Brucella sp. NVSL 07-0026] gi|306275126|gb|EFM56882.1| cold shock protein [Brucella sp. BO1] gi|306406453|gb|EFM62691.1| cold shock protein [Brucella sp. NF 2653] Length = 71 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N +KG+GFI P+ + G D+F+H SAV ++GL L + Q V+Y+ + Sbjct: 1 MAQTGQVKFFNTEKGFGFIKPD---DGGADIFVHISAVQASGLPGLADNQKVSYETEPDR 57 Query: 61 ANGKYSAENLKL 72 A N+ + Sbjct: 58 RGKGPKAVNITI 69 >gi|39995301|ref|NP_951252.1| cold-shock domain-contain protein [Geobacter sulfurreducens PCA] gi|39982063|gb|AAR33525.1| cold-shock domain family protein [Geobacter sulfurreducens PCA] gi|298504306|gb|ADI83029.1| cold shock DNA/RNA-binding protein [Geobacter sulfurreducens KN400] Length = 66 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ E +G+DVF H SA++ G +LTEG VT++ + Sbjct: 1 MVNGTVKWFNDSKGFGFLEQE----NGEDVFCHFSAISGDGFKSLTEGDRVTFEITKG-P 55 Query: 62 NGKYSAENLK 71 G +A + Sbjct: 56 KGLQAANVTR 65 >gi|296113319|ref|YP_003627257.1| cold-shock DNA-binding protein family [Moraxella catarrhalis RH4] gi|295921013|gb|ADG61364.1| cold-shock DNA-binding protein family [Moraxella catarrhalis RH4] Length = 91 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G +KW+N KG+GFI E G+DVF+H A+ G +L EGQ V + V Sbjct: 27 EQGVVKWFNDAKGFGFIQRET----GEDVFVHFRAIQGEGYRSLKEGQAVEF-VVTTGDK 81 Query: 63 GKYSAENLKL 72 G + E KL Sbjct: 82 GLQAEEVTKL 91 >gi|330963182|gb|EGH63442.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. actinidiae str. M302091] Length = 70 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59 Query: 62 N 62 Sbjct: 60 G 60 >gi|311694973|gb|ADP97846.1| cold-shock DNA-binding domain protein [marine bacterium HP15] Length = 103 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW+N KGYGFI +G ++ D+F H S+V G L GQ VT+D +D Sbjct: 1 MPRGKVKWFNNAKGYGFIIEDGCSD---DLFAHFSSVQMDGYKTLKAGQAVTFDKKPSDK 57 Query: 62 NGKYSAENLKLVPKS 76 + +VP Sbjct: 58 G----IHAVNIVPDE 68 >gi|153011838|ref|YP_001373051.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151563726|gb|ABS17222.1| putative cold-shock DNA-binding domain protein [Ochrobactrum anthropi ATCC 49188] Length = 68 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKG+GFITPE G DVF+H S +A AG+ +L EGQ V+Y+ Q+ Sbjct: 1 MATGTVKFFNQDKGFGFITPES---GGSDVFVHVSGLAQAGV-SLGEGQKVSYEIGQDRK 56 Query: 62 NGKYSAENLKLV 73 GK AEN++ + Sbjct: 57 TGKAKAENVRPI 68 >gi|330962175|gb|EGH62435.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. maculicola str. ES4326] Length = 70 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVSVQGQK 59 Query: 62 N 62 Sbjct: 60 G 60 >gi|71278403|ref|YP_271177.1| cold shock DNA-binding domain-containing protein [Colwellia psychrerythraea 34H] gi|71144143|gb|AAZ24616.1| cold-shock DNA-binding domain family protein [Colwellia psychrerythraea 34H] Length = 68 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H +A+ G L EGQ V + Sbjct: 5 TGTVKWFNEAKGFGFIEQE----NGPDVFAHFNAIVGDGFKTLAEGQKVEFTVTDGQKG- 59 Query: 64 KYSAENL 70 AEN+ Sbjct: 60 -PQAENI 65 >gi|90580456|ref|ZP_01236262.1| putative Cold shock-like protein [Vibrio angustum S14] gi|90438365|gb|EAS63550.1| putative Cold shock-like protein [Vibrio angustum S14] Length = 70 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + G +KW+N DKG+GFIT + G DVF+H A+ S G L +GQ V++D Q Sbjct: 5 NTGLVKWFNEDKGFGFITQD---NGGADVFVHFQAIVSEGFKTLMDGQKVSFDVEQGQ-K 60 Query: 63 GKYSAENLKL 72 G ++ + L Sbjct: 61 GLQASNVVAL 70 >gi|332978230|gb|EGK14961.1| cold shock protein CspA [Psychrobacter sp. 1501(2011)] Length = 71 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G++KW+N KG+GFI E SG+D+F+H A+ G +L +GQ V + V Sbjct: 4 REQGTVKWFNDAKGFGFIQRE----SGEDIFVHFRAIQGDGYRSLQDGQKVEF-VVTEGE 58 Query: 62 NGKYSAENLKL 72 G + E K+ Sbjct: 59 KGLQAEEVTKV 69 >gi|326794630|ref|YP_004312450.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] gi|326545394|gb|ADZ90614.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] Length = 84 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +HRGS+KW+N KGYGFI + E D+F+H SA+ G L GQ VT+D Sbjct: 1 MHRGSVKWFNNAKGYGFIVSDSFDE---DLFIHYSAINVEGYKTLKAGQSVTFDVSPGKR 57 Query: 62 NGKYSAENLKLVPKSS 77 A ++ V +++ Sbjct: 58 G--LHAVDITPVDQAT 71 >gi|149187680|ref|ZP_01865977.1| cold shock protein [Vibrio shilonii AK1] gi|148838560|gb|EDL55500.1| cold shock protein [Vibrio shilonii AK1] Length = 69 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H S + + G L EGQ V + Q Sbjct: 6 TGTVKWFNETKGFGFIQQE----NGPDVFAHFSNIKADGFRTLAEGQKVAFKVTQGQKG- 60 Query: 64 KYSAENLKLV 73 AE + LV Sbjct: 61 -PQAEEITLV 69 >gi|262372339|ref|ZP_06065618.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] gi|262312364|gb|EEY93449.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] Length = 73 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI +++G DVF H S +A+ G L EGQ V +D +Q Sbjct: 6 NGTVKWFNETKGFGFIQ----SDNGQDVFAHYSEIANNGFKTLFEGQRVKFDVMQGKKG- 60 Query: 64 KYSAENLKLV 73 A N+ ++ Sbjct: 61 -LQASNISVL 69 >gi|170723258|ref|YP_001750946.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida W619] gi|169761261|gb|ACA74577.1| cold-shock DNA-binding domain protein [Pseudomonas putida W619] Length = 69 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI E G DVF+H A+ G L EGQ V Y VQ Sbjct: 4 RETGNVKWFNDAKGFGFIQRE----GGADVFVHYRAIRGEGHRTLVEGQRVEYSCVQGQK 59 Query: 62 NGKYSAENL 70 AE++ Sbjct: 60 G--LQAEDV 66 >gi|320105861|ref|YP_004181451.1| cold-shock DNA-binding domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924382|gb|ADV81457.1| cold-shock DNA-binding domain protein [Terriglobus saanensis SP1PR4] Length = 66 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GF++ +G+DVF+H SA+ S+G +L EGQ V ++ V+ Sbjct: 1 MEQGTVKWFNDAKGFGFVS----RANGEDVFVHYSAITSSGFKSLQEGQAVQFNVVKGPK 56 Query: 62 NGKYSAENLKLV 73 + A +++ + Sbjct: 57 G--WQASDVQPL 66 >gi|257067904|ref|YP_003154159.1| cold-shock DNA-binding protein family [Brachybacterium faecium DSM 4810] gi|256558722|gb|ACU84569.1| cold-shock DNA-binding protein family [Brachybacterium faecium DSM 4810] Length = 67 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + W+N DKGYGFI PE + DVF H SA+ +G +L E Q V +D Q Sbjct: 1 MATGIVTWFNSDKGYGFIAPE---DGSADVFAHFSAIVGSGRRDLEENQRVEFDVEQGPK 57 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 58 G--LQATNIR 65 >gi|163794316|ref|ZP_02188288.1| cold-shock DNA-binding domain protein [alpha proteobacterium BAL199] gi|159180484|gb|EDP65005.1| cold-shock DNA-binding domain protein [alpha proteobacterium BAL199] Length = 68 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI PE + DVFLH SAV AGL + EGQ V Y+ ++ Sbjct: 1 MAVGTVKFFNTTKGFGFIQPE---DGSKDVFLHVSAVERAGLRSPNEGQKVQYEI-ESGR 56 Query: 62 NGKYSAENLK 71 +G+ SA N+ Sbjct: 57 DGRTSAGNIS 66 >gi|15598462|ref|NP_251956.1| cold acclimation protein B [Pseudomonas aeruginosa PAO1] gi|107102797|ref|ZP_01366715.1| hypothetical protein PaerPA_01003865 [Pseudomonas aeruginosa PACS2] gi|218890541|ref|YP_002439405.1| cold acclimation protein B [Pseudomonas aeruginosa LESB58] gi|254236229|ref|ZP_04929552.1| cold acclimation protein B [Pseudomonas aeruginosa C3719] gi|2493770|sp|P95459|CSPA_PSEAE RecName: Full=Major cold shock protein CspA gi|9949391|gb|AAG06654.1|AE004749_3 cold acclimation protein B [Pseudomonas aeruginosa PAO1] gi|1778825|gb|AAB40922.1| major cold shock protein CspA [Pseudomonas aeruginosa PAO1] gi|126168160|gb|EAZ53671.1| cold acclimation protein B [Pseudomonas aeruginosa C3719] gi|218770764|emb|CAW26529.1| cold acclimation protein B [Pseudomonas aeruginosa LESB58] Length = 69 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFITPE SG+D+F+H ++ G +L EGQ V++ V Sbjct: 4 RQNGTVKWFNDAKGFGFITPE----SGNDLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQK 59 Query: 62 NGKYSAENLKLV 73 A+ +++V Sbjct: 60 G--LQADEVQVV 69 >gi|116750635|ref|YP_847322.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116699699|gb|ABK18887.1| cold-shock DNA-binding protein family [Syntrophobacter fumaroxidans MPOB] Length = 67 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI T DVF+H SA+A+ G +L+EG+ VT+D + Sbjct: 1 MSEGRVKWFNDKKGYGFIE----TTDQGDVFVHYSAIAAEGFRSLSEGERVTFDVERGPK 56 Query: 62 NGKYSAENLKLVP 74 A N+K V Sbjct: 57 G--PQAVNVKKVE 67 >gi|327481387|gb|AEA84697.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 69 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFI +G DVF+H A+ G +L EGQ V + +Q Sbjct: 4 RETGTVKWFNDAKGYGFIQ----RGNGADVFVHYRAIRGDGHRSLAEGQQVEFSVIQGQK 59 Query: 62 NGKYSAENL 70 AE++ Sbjct: 60 G--LQAEDV 66 >gi|254787663|ref|YP_003075092.1| cold shock DNA-binding domain-containing protein [Teredinibacter turnerae T7901] gi|237684629|gb|ACR11893.1| cold shock DNA-binding domain protein [Teredinibacter turnerae T7901] Length = 69 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ SG DVF H SA+ S+G LTEGQ V + + G Sbjct: 6 TGTVKWFNESKGFGFISQ----PSGPDVFAHFSAIESSGFKTLTEGQQVEFTVT-DGQKG 60 Query: 64 KYSAENLKL 72 + + L Sbjct: 61 PQAQNIVAL 69 >gi|329296308|ref|ZP_08253644.1| CspB [Plautia stali symbiont] Length = 70 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N +KG+GFI+PE +S DVF+H SA+ +L +GQ V V+N + G Sbjct: 7 GTVKWFNAEKGFGFISPE---DSSKDVFVHFSAIQGTDFRSLDDGQKVELS-VENGSKGP 62 Query: 65 YSAENLK 71 SA N+K Sbjct: 63 -SAVNVK 68 >gi|299144112|ref|ZP_07037192.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518597|gb|EFI42336.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 65 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFIT E G DVF H S + G L EGQ V +D V+ + Sbjct: 2 KGKVKWFNGEKGFGFIT----AEDGKDVFAHFSQIQKEGFKTLEEGQDVEFDVVEKEKG- 56 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 57 -PQAENIVIL 65 >gi|85715217|ref|ZP_01046200.1| cold shock protein [Nitrobacter sp. Nb-311A] gi|85697863|gb|EAQ35737.1| cold shock protein [Nitrobacter sp. Nb-311A] Length = 62 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 5/66 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KGYGFI PE G DVF+H SAV AGL +L EG V+Y+ V N +GK S Sbjct: 1 MKWFNGQKGYGFIEPES---GGKDVFVHISAVERAGLGSLNEGDKVSYEVVTN--HGKES 55 Query: 67 AENLKL 72 AENL++ Sbjct: 56 AENLRV 61 >gi|194292370|ref|YP_002008277.1| cold shock protein, transcription antiterminator, affects expression of rpos and uspa [Cupriavidus taiwanensis LMG 19424] gi|193226274|emb|CAQ72223.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Cupriavidus taiwanensis LMG 19424] Length = 67 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H S + +G +L EGQ V Y Sbjct: 1 METGTVKWFNDSKGFGFITPDA---GGNDLFAHFSEIQGSGFKSLAEGQKVRY-VAGVGQ 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPAA 61 >gi|168184293|ref|ZP_02618957.1| major cold shock protein [Clostridium botulinum Bf] gi|187779961|ref|ZP_02996434.1| hypothetical protein CLOSPO_03557 [Clostridium sporogenes ATCC 15579] gi|237794738|ref|YP_002862290.1| major cold shock protein CspA [Clostridium botulinum Ba4 str. 657] gi|182672649|gb|EDT84610.1| major cold shock protein [Clostridium botulinum Bf] gi|187773586|gb|EDU37388.1| hypothetical protein CLOSPO_03557 [Clostridium sporogenes ATCC 15579] gi|229263133|gb|ACQ54166.1| major cold shock protein CspA [Clostridium botulinum Ba4 str. 657] Length = 67 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + G++KW+N +KG+GFI EG DVF+H SA+ NL EGQ V ++ V+ Sbjct: 1 MKTGTVKWFNSEKGFGFIEVEGE----KDVFVHFSAIQGDEPRKNLEEGQKVEFE-VEEG 55 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 56 QKGPQAANVIKL 67 >gi|310829592|ref|YP_003961949.1| cold shock protein [Eubacterium limosum KIST612] gi|308741326|gb|ADO38986.1| cold shock protein [Eubacterium limosum KIST612] Length = 66 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFI+ E GDDVF H S++ G L +G VT+D Q Sbjct: 1 MNNGTVKWFNGDKGFGFISRE----DGDDVFEHFSSIVGDGFKTLNDGDRVTFDTEQGPR 56 Query: 62 NGKYSAENL 70 A+N+ Sbjct: 57 G--LQAKNV 63 >gi|257454785|ref|ZP_05620036.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] gi|257447718|gb|EEV22710.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] Length = 70 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI + G DVF H S +AS+G L+EGQ V++ Q Sbjct: 6 NGTVKWFNESKGFGFIEQD---NGGKDVFAHYSQIASSGFKTLSEGQRVSFVVTQGQKG- 61 Query: 64 KYSAENLKLV 73 A N+ + Sbjct: 62 -DQASNIVAI 70 >gi|328953011|ref|YP_004370345.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453335|gb|AEB09164.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans DSM 11109] Length = 68 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N KG+GFI+ E +G DVF+H S++ S G +L+E V ++ VQ Sbjct: 1 MKETGRVKWFNDSKGFGFISRE----NGPDVFVHHSSIQSKGFRSLSENDEVEFEVVQGQ 56 Query: 61 ANGKYSAENLKL 72 G + +K+ Sbjct: 57 -KGLQAQNVVKI 67 >gi|166712680|ref|ZP_02243887.1| major cold shock protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 71 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GFI+ E +G+DVF+H A+ G +L EGQ V++ VQ Sbjct: 6 RENGLVKWFNDAKGFGFISRE----NGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQK 61 Query: 62 NGKYSAENLKLV 73 A+ ++++ Sbjct: 62 G--LQADAVQVI 71 >gi|153874948|ref|ZP_02002962.1| Cold shock protein [Beggiatoa sp. PS] gi|152068588|gb|EDN67038.1| Cold shock protein [Beggiatoa sp. PS] Length = 71 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI E E DVF+H +++ G +L EGQ VT D Q Sbjct: 8 GTVKWFNDSKGFGFIEQE---EGQPDVFVHHTSIQGEGFKSLQEGQKVTMDVTQGQKG-- 62 Query: 65 YSAENL 70 AEN+ Sbjct: 63 LQAENV 68 >gi|238762682|ref|ZP_04623651.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638] gi|238698987|gb|EEP91735.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638] Length = 80 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 16 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQGQKG- 71 Query: 64 KYSAENL 70 SA N+ Sbjct: 72 -PSAVNV 77 >gi|224282734|ref|ZP_03646056.1| cold-shock DNA-binding domain protein [Bifidobacterium bifidum NCIMB 41171] gi|311064055|ref|YP_003970780.1| cold shock protein CspA [Bifidobacterium bifidum PRL2010] gi|310866374|gb|ADP35743.1| CspA Cold shock protein [Bifidobacterium bifidum PRL2010] Length = 67 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K+++ KGYGFIT + GDDVF+H S + + G L EG V Y+ + Sbjct: 1 MAQGTVKFFSAGKGYGFITSDA---GGDDVFVHYSVIQADGFKTLNEGDKVEYE-AERGP 56 Query: 62 NGKYSAENLKL 72 G + + +KL Sbjct: 57 KGMQATKVVKL 67 >gi|21231725|ref|NP_637642.1| major cold shock protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768149|ref|YP_242911.1| major cold shock protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991286|ref|YP_001903296.1| cold shock protein [Xanthomonas campestris pv. campestris str. B100] gi|21113428|gb|AAM41566.1| major cold shock protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573481|gb|AAY48891.1| major cold shock protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733046|emb|CAP51244.1| cold shock protein [Xanthomonas campestris pv. campestris] Length = 69 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GFITPE SG D+F+H A+ G +L EGQ V++ VQ Sbjct: 4 RQNGVVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVSFVAVQGQK 59 Query: 62 NGKYSAENLKLV 73 A+ ++ V Sbjct: 60 G--MQADQVQAV 69 >gi|312137854|ref|YP_004005190.1| cold shock protein [Rhodococcus equi 103S] gi|325676045|ref|ZP_08155727.1| cold shock protein CspA [Rhodococcus equi ATCC 33707] gi|311887193|emb|CBH46502.1| cold shock protein [Rhodococcus equi 103S] gi|325553085|gb|EGD22765.1| cold shock protein CspA [Rhodococcus equi ATCC 33707] Length = 67 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI P ++ D+F+H S + S G +L E Q V ++ Q A Sbjct: 1 MAEGTVKWFNSEKGFGFIAP---SDGSADLFVHYSEIQSGGFRSLEENQHVRFEIGQG-A 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPQA 61 >gi|294053655|ref|YP_003547313.1| cold-shock DNA-binding domain protein [Coraliomargarita akajimensis DSM 45221] gi|293612988|gb|ADE53143.1| cold-shock DNA-binding domain protein [Coraliomargarita akajimensis DSM 45221] Length = 67 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ +KGYGFI P+ + D+F+H S + S G L +GQ V ++ Sbjct: 1 MSTGTVKWFDAEKGYGFIQPD---DGSKDLFVHHSEIQSDGYAKLEDGQKVEFEVGSGQK 57 Query: 62 NG 63 Sbjct: 58 GP 59 >gi|297191503|ref|ZP_06908901.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|197722057|gb|EDY65965.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] Length = 67 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q Sbjct: 1 MASGVVKWFNAEKGFGFIEQDG---GGPDVFAHYSNIAAQGFRELLEGQKVNFDIAQGQK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|149927840|ref|ZP_01916091.1| cold-shock DNA-binding domain family protein [Limnobacter sp. MED105] gi|149823462|gb|EDM82693.1| cold-shock DNA-binding domain family protein [Limnobacter sp. MED105] Length = 69 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K++N KG+GFI+ E +G DVF+H SA+ G L EGQ V++ Q Sbjct: 6 TGQVKFFNESKGFGFISRE----NGPDVFVHFSAIQGNGFKTLAEGQKVSFTVTQGQKG- 60 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 61 -PQAENVTAL 69 >gi|71065502|ref|YP_264229.1| cold-shock DNA-binding protein family protein [Psychrobacter arcticus 273-4] gi|71038487|gb|AAZ18795.1| cold-shock DNA-binding protein family [Psychrobacter arcticus 273-4] Length = 71 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G +KW+N KG+GFI + SG+D+F+H A+ G +L +G+ V + V+ D Sbjct: 4 REQGIVKWFNDSKGFGFIQRD----SGEDIFVHFRAIQGDGYRSLKDGEKVEFSVVEGDK 59 Query: 62 NGKYSAENLKLVPK 75 AE ++ V + Sbjct: 60 G--LQAEEVRRVEE 71 >gi|300113220|ref|YP_003759795.1| cold-shock DNA-binding domain-containing protein [Nitrosococcus watsonii C-113] gi|299539157|gb|ADJ27474.1| cold-shock DNA-binding domain protein [Nitrosococcus watsonii C-113] Length = 69 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KGYGFI E G D+F+H ++ +G L EGQ V++ VQ Sbjct: 5 QTGTVKWFNDSKGYGFIQRE----GGSDLFVHYRSITGSGHRTLKEGQQVSFIEVQGQKG 60 Query: 63 GKYSAENLKLV 73 A+N+ ++ Sbjct: 61 --PQADNVTVL 69 >gi|254465282|ref|ZP_05078693.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] gi|206686190|gb|EDZ46672.1| 'Cold-shock' DNA-binding domain, putative [Rhodobacterales bacterium Y4I] Length = 68 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI P+ E G DVF+H SAV +G+ L + + Y+ + Sbjct: 1 MPSGTVKWFNTTKGYGFIEPD---EGGKDVFVHISAVERSGMTGLADNMKIGYELSEGRD 57 Query: 62 NGKYSAE 68 K +AE Sbjct: 58 GRKMAAE 64 >gi|70728544|ref|YP_258293.1| cold-shock domain-contain protein [Pseudomonas fluorescens Pf-5] gi|68342843|gb|AAY90449.1| cold-shock domain family protein [Pseudomonas fluorescens Pf-5] Length = 82 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFI E G DVF+H A+ G +LTEGQ V Y V+ Sbjct: 17 RETGNVKWFNDAKGYGFIQRE----GGADVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQK 72 Query: 62 NGKYSAENL 70 AE++ Sbjct: 73 G--LQAEDV 79 >gi|325283100|ref|YP_004255641.1| cold-shock DNA-binding domain-containing protein [Deinococcus proteolyticus MRP] gi|324314909|gb|ADY26024.1| cold-shock DNA-binding domain protein [Deinococcus proteolyticus MRP] Length = 80 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW++ +KGYGFI DVF+H SA+ S G L EG V ++ Sbjct: 1 MPQGRVKWFSVEKGYGFIE----HPGNPDVFVHYSAIQSGGFRKLNEGDEVEFEVGDGQG 56 Query: 62 NGKYSAENLKL 72 + A+N+ + Sbjct: 57 DRGPQAKNVVV 67 >gi|295105906|emb|CBL03449.1| cold-shock DNA-binding protein family [Gordonibacter pamelaeae 7-10-1-b] Length = 67 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKGYGFI+ + GDD+F+H S + + G L E V + + Sbjct: 1 MSTGTVKWFNADKGYGFISQD----GGDDLFVHFSEIQTDGFKTLEENAHVEFTVAVGN- 55 Query: 62 NGKYSAENL 70 NGK A + Sbjct: 56 NGKSQATMV 64 >gi|148270113|ref|YP_001244573.1| cold-shock DNA-binding domain-containing protein [Thermotoga petrophila RKU-1] gi|170288941|ref|YP_001739179.1| cold-shock DNA-binding domain-containing protein [Thermotoga sp. RQ2] gi|281412545|ref|YP_003346624.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila RKU-10] gi|147735657|gb|ABQ46997.1| cold-shock DNA-binding protein family [Thermotoga petrophila RKU-1] gi|170176444|gb|ACB09496.1| cold-shock DNA-binding domain protein [Thermotoga sp. RQ2] gi|281373648|gb|ADA67210.1| cold-shock DNA-binding domain protein [Thermotoga naphthophila RKU-10] Length = 66 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++ KGYGFIT + G DVF+H SA+ G L EGQ+V ++ Q G Sbjct: 2 RGKVKWFDAKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFEI-QEGKKG 56 Query: 64 KYSAEN 69 +A Sbjct: 57 PQAAHV 62 >gi|167467804|ref|ZP_02332508.1| major cold shock protein Cspa1 [Yersinia pestis FV-1] Length = 70 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 6 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKG- 61 Query: 64 KYSAENL 70 SA N+ Sbjct: 62 -PSAVNV 67 >gi|308274610|emb|CBX31209.1| Cold shock-like protein cspE [uncultured Desulfobacterium sp.] Length = 66 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N KG+GFI E G DVF+H SA+ +G L EG V++D Q Sbjct: 1 MAKGIVKWFNDKKGFGFIE----KEEGGDVFVHHSAITMSGFRTLAEGDRVSFDVEQG-K 55 Query: 62 NGKYSAENLKL 72 G + +K+ Sbjct: 56 QGPAAKNVVKI 66 >gi|166711808|ref|ZP_02243015.1| major cold shock protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 69 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 7 GIVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQKG-- 60 Query: 65 YSAENLKLV 73 A+ ++ V Sbjct: 61 MQADQVQAV 69 >gi|224367563|ref|YP_002601726.1| CspL [Desulfobacterium autotrophicum HRM2] gi|223690279|gb|ACN13562.1| CspL [Desulfobacterium autotrophicum HRM2] Length = 66 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW++ KG+GFI + G+DVF+H +A+ G L+EG+ V++D ND Sbjct: 1 MAQGTVKWFSDKKGFGFIEQD----EGNDVFVHHTAIDMPGFKTLSEGERVSFDIEDNDR 56 Query: 62 NGKYSAENL 70 +A N+ Sbjct: 57 G--PAARNV 63 >gi|84624223|ref|YP_451595.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368163|dbj|BAE69321.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 69 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 6 NGIVKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQKG- 60 Query: 64 KYSAENLKLV 73 A+ ++ V Sbjct: 61 -MQADQVQAV 69 >gi|224000015|ref|XP_002289680.1| cold-shock DNA-binding domain-containing protein [Thalassiosira pseudonana CCMP1335] gi|220974888|gb|EED93217.1| cold-shock DNA-binding domain-containing protein [Thalassiosira pseudonana CCMP1335] Length = 136 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 46/68 (67%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KG+GF+ P+ + +VF+H SA+ + G +L +G++V ++ +Q + NG Sbjct: 43 KGTVKWFDAKKGFGFLVPD---DGSAEVFVHHSAIHANGFRSLGDGEVVEFEVMQ-EPNG 98 Query: 64 KYSAENLK 71 K+ A N+ Sbjct: 99 KWKALNVT 106 >gi|149185382|ref|ZP_01863698.1| cold shock protein [Erythrobacter sp. SD-21] gi|148830602|gb|EDL49037.1| cold shock protein [Erythrobacter sp. SD-21] Length = 263 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFI E G+D+F+H SAV AGL L EGQ + ++ V D G Sbjct: 110 KGTVKFFNSQKGFGFIQQET---GGEDIFVHISAVERAGLEGLAEGQELEFNLV--DRGG 164 Query: 64 KYSAENLKLV 73 K SA++L++V Sbjct: 165 KVSAQDLQVV 174 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GF+T + + D F+H SAV +GL + EG+ +D + D G Sbjct: 197 TGTVKFFNSMKGFGFLTRD---DGQPDAFVHISAVERSGLSQINEGERYEFDL-EVDRRG 252 Query: 64 KYSAENL 70 KYSA NL Sbjct: 253 KYSAVNL 259 >gi|260774268|ref|ZP_05883183.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14] gi|260611229|gb|EEX36433.1| cold shock protein CspA [Vibrio metschnikovii CIP 69.14] Length = 70 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF+TP+ G DVF+H +++AS G L EGQ V+++ Q Sbjct: 6 TGSVKWFNETKGFGFLTPD---NGGSDVFVHFNSIASEGFKTLAEGQKVSFNVEQGKKG- 61 Query: 64 KYSAENLKLV 73 AE + ++ Sbjct: 62 -PQAEQVTVL 70 >gi|229592309|ref|YP_002874428.1| cold shock protein cspc [Pseudomonas fluorescens SBW25] gi|229364175|emb|CAY51835.1| cold shock protein cspc [Pseudomonas fluorescens SBW25] Length = 73 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 6 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 60 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 61 LQAEDVIAALPR 72 >gi|58581133|ref|YP_200149.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623058|ref|YP_450430.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58425727|gb|AAW74764.1| major cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366998|dbj|BAE68156.1| major cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 71 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GFI+ E +G+DVF+H A+ G +L EGQ V++ VQ Sbjct: 6 RENGLVKWFNDAKGFGFISRE----NGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQK 61 Query: 62 NGKYSAENLKLV 73 A+ +++V Sbjct: 62 G--LQADAVQVV 71 >gi|109900034|ref|YP_663289.1| cold-shock DNA-binding domain-containing protein [Pseudoalteromonas atlantica T6c] gi|109702315|gb|ABG42235.1| cold-shock DNA-binding protein family [Pseudoalteromonas atlantica T6c] Length = 68 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKG+GFITPE + G D+F+H S + G L +GQ V ++ Q+ Sbjct: 1 MSQGTVKWFNADKGFGFITPE---DGGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQSP 57 Query: 61 ANGKYSAENLKLV 73 A N+ V Sbjct: 58 KG--PCANNVVPV 68 >gi|251787872|ref|YP_003002593.1| cold-shock DNA-binding domain-containing protein [Dickeya zeae Ech1591] gi|271502353|ref|YP_003335379.1| cold-shock DNA-binding domain-containing protein [Dickeya dadantii Ech586] gi|247536493|gb|ACT05114.1| cold-shock DNA-binding domain protein [Dickeya zeae Ech1591] gi|270345908|gb|ACZ78673.1| cold-shock DNA-binding domain protein [Dickeya dadantii Ech586] Length = 70 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI+P + DVF+H SA+ S L EGQ V + + N G Sbjct: 6 TGSVKWFNESKGFGFISP---ADGSKDVFVHFSAIQSDSFKTLYEGQKVEF-VIGNGPKG 61 Query: 64 KYSAENL 70 SAEN+ Sbjct: 62 P-SAENV 67 >gi|237738393|ref|ZP_04568874.1| cold-shock DNA-binding domain-containing protein [Fusobacterium mortiferum ATCC 9817] gi|229420273|gb|EEO35320.1| cold-shock DNA-binding domain-containing protein [Fusobacterium mortiferum ATCC 9817] Length = 66 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI+ E G+D F+H S + + G +L EGQ V+++ + Sbjct: 1 MLKGTVKWFNKDKGFGFIS----GEDGNDYFVHYSNINAKGFRSLEEGQAVSFEVTEGAK 56 Query: 62 NGKYSAENLKL 72 A N+ + Sbjct: 57 G--PVASNVTV 65 >gi|320108152|ref|YP_004183742.1| cold-shock DNA-binding domain-containing protein [Terriglobus saanensis SP1PR4] gi|319926673|gb|ADV83748.1| cold-shock DNA-binding domain protein [Terriglobus saanensis SP1PR4] Length = 71 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 6/74 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++GS+KW+N KG+GF+ E+G DVF+H S++ G +L EG V +D +Q + Sbjct: 4 YKGSVKWFNNAKGFGFL----GRENGPDVFVHYSSIQLDGYKSLKEGDEVEFDVIQGEKG 59 Query: 63 GKYSAENLKLVPKS 76 A+ + + ++ Sbjct: 60 --PQADQVTRIKEA 71 >gi|94500606|ref|ZP_01307136.1| Cold shock protein [Oceanobacter sp. RED65] gi|94427161|gb|EAT12141.1| Cold shock protein [Oceanobacter sp. RED65] Length = 171 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 RG +KW+N KG+GFIT + +G+DVF+H ++ G +L+EGQ V + V Sbjct: 105 RERGLVKWFNVKKGFGFITRD----NGEDVFVHFRSIRGTGHRSLSEGQNVKFSVVDGQK 160 Query: 62 NGKYSAENLKLVP 74 AE++ +V Sbjct: 161 G--LQAEDVSVVK 171 >gi|114321683|ref|YP_743366.1| cold-shock DNA-binding protein family protein [Alkalilimnicola ehrlichii MLHE-1] gi|114228077|gb|ABI57876.1| cold-shock DNA-binding protein family [Alkalilimnicola ehrlichii MLHE-1] Length = 69 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW++ KG+GFI E G+DVF+H A+ G +L EGQ V ++ V+ Sbjct: 4 RETGTVKWFDNAKGFGFIQREQ----GEDVFVHFRAIRGEGFRSLDEGQQVEFNVVRGPK 59 Query: 62 NGKYSAENLKLV 73 AE++ V Sbjct: 60 G--LQAEDVAAV 69 >gi|239809492|gb|ACS26216.1| unknown [uncultured bacterium] Length = 69 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFI E +G DVF+H SA+ AG L EGQ V + Q Sbjct: 6 TGTVKFFNEAKGFGFIQRE----NGPDVFVHFSAIQGAGFKTLAEGQKVQFTVGQGQKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -PQAENV 66 >gi|306834445|ref|ZP_07467559.1| cold shock protein CspA [Streptococcus bovis ATCC 700338] gi|304423431|gb|EFM26583.1| cold shock protein CspA [Streptococcus bovis ATCC 700338] Length = 67 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI+ E +G DVF H S + S G +L +GQ V +D Q Sbjct: 1 MVQGTVKWFNTDKGFGFISQE----NGADVFAHFSEIKSNGFKSLEDGQKVQFDVEQG-K 55 Query: 62 NGKYSAENLKL 72 G + +K+ Sbjct: 56 RGLQAVNIIKI 66 >gi|254481420|ref|ZP_05094665.1| putative 'Cold-shock' DNA-binding domain protein [marine gamma proteobacterium HTCC2148] gi|214038583|gb|EEB79245.1| putative 'Cold-shock' DNA-binding domain protein [marine gamma proteobacterium HTCC2148] Length = 70 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFIT E E DVF+H ++ G L EGQ V + ++ Sbjct: 7 GTVKWFNNAKGFGFITRE---EEDADVFVHFRSIEGDGYRTLNEGQEVEFSLIEGPKG-- 61 Query: 65 YSAENLKLV 73 AE++ V Sbjct: 62 LQAEDVHKV 70 >gi|78186132|ref|YP_374175.1| cold-shock DNA-binding domain-containing protein [Chlorobium luteolum DSM 273] gi|78166034|gb|ABB23132.1| cold-shock DNA-binding protein family [Chlorobium luteolum DSM 273] Length = 69 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KGYGFI G DVF+H SA+ +G L EGQ V+ + Q + Sbjct: 6 EGTVKWFNEEKGYGFIQQ----GEGKDVFVHYSAINGSGRKTLVEGQKVSMEVTQGEKG- 60 Query: 64 KYSAENLKLV 73 A N+ + Sbjct: 61 -LQAANVTPL 69 >gi|93006301|ref|YP_580738.1| cold-shock DNA-binding domain-containing protein [Psychrobacter cryohalolentis K5] gi|92393979|gb|ABE75254.1| cold-shock DNA-binding protein family [Psychrobacter cryohalolentis K5] Length = 71 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G +KW+N KG+GFI + SG+D+F+H A+ G +L +G+ V + V+ D Sbjct: 4 REQGIVKWFNDSKGFGFIQRD----SGEDIFVHFRAIQGDGYRSLKDGEKVEFSVVEGDK 59 Query: 62 NGKYSAENLKLVPK 75 AE ++ V + Sbjct: 60 G--LQAEEVRKVEE 71 >gi|84385112|ref|ZP_00988144.1| cold shock DNA-binding domain protein [Vibrio splendidus 12B01] gi|86144296|ref|ZP_01062628.1| cold shock DNA-binding domain protein [Vibrio sp. MED222] gi|218676272|ref|YP_002395091.1| cold shock DNA-binding domain protein [Vibrio splendidus LGP32] gi|84379709|gb|EAP96560.1| cold shock DNA-binding domain protein [Vibrio splendidus 12B01] gi|85837195|gb|EAQ55307.1| cold shock DNA-binding domain protein [Vibrio sp. MED222] gi|218324540|emb|CAV26032.1| cold shock DNA-binding domain protein [Vibrio splendidus LGP32] Length = 69 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI E +G DVF H SA+ G L EGQ V + Q Sbjct: 6 TGKVKWFNETKGFGFIEQE----NGPDVFAHFSAITGDGFKTLAEGQQVEFTVSQGQKG- 60 Query: 64 KYSAENLKLV 73 A+++K++ Sbjct: 61 -PQADSIKVL 69 >gi|297801940|ref|XP_002868854.1| hypothetical protein ARALYDRAFT_912317 [Arabidopsis lyrata subsp. lyrata] gi|297314690|gb|EFH45113.1| hypothetical protein ARALYDRAFT_912317 [Arabidopsis lyrata subsp. lyrata] Length = 195 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +GS+KW++ KG+GFITP+ + GDD+F+H+S++ S G +L + V ++ V+ D Sbjct: 10 RRKGSVKWFDTQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSLAADEAVEFE-VEMDN 65 Query: 62 NGKYSAENLK 71 N + A ++ Sbjct: 66 NSRPKAIDVS 75 >gi|206890727|ref|YP_002249771.1| hypothetical protein THEYE_A1982 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742665|gb|ACI21722.1| conserved domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 67 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW+N KG+GFI + G DVF+H +++ G L +G V +D V+ D Sbjct: 1 MAFEGRVKWFNESKGFGFIQQD----GGQDVFVHYTSIKGDGFKTLKQGDRVKFDVVEGD 56 Query: 61 ANGKYSAENLKLV 73 K A N++ V Sbjct: 57 RGPK--AVNVEKV 67 >gi|87200599|ref|YP_497856.1| cold-shock DNA-binding protein family protein [Novosphingobium aromaticivorans DSM 12444] gi|87136280|gb|ABD27022.1| cold-shock DNA-binding protein family [Novosphingobium aromaticivorans DSM 12444] Length = 68 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKGYGFI P+G D F+H SAV +G+ L + Q V Y+ + D Sbjct: 1 MPVGTVKFFNVDKGYGFIAPDG---GAPDNFVHISAVERSGMATLDKDQRVQYEL-ETDK 56 Query: 62 NGKYSAENLK 71 GK SA NL+ Sbjct: 57 RGKTSAVNLQ 66 >gi|120611988|ref|YP_971666.1| cold-shock DNA-binding protein family protein [Acidovorax citrulli AAC00-1] gi|120590452|gb|ABM33892.1| cold-shock DNA-binding protein family [Acidovorax citrulli AAC00-1] Length = 70 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFI P+ + G D+F H + G L E Q V ++ Q Sbjct: 4 QTGIVKWFNEGKGFGFIAPD---DGGKDLFAHFREIQGGGFKTLAENQHVQFEVTQGAKG 60 Query: 63 GKYSAENLKLV 73 A N+++V Sbjct: 61 --PQASNIRVV 69 >gi|51597876|ref|YP_072067.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP 32953] gi|51597877|ref|YP_072068.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP 32953] gi|153949918|ref|YP_001399369.1| cold shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|170022694|ref|YP_001719199.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|186897072|ref|YP_001874184.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|186897073|ref|YP_001874185.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|51591158|emb|CAH22823.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP 32953] gi|51591159|emb|CAH22824.1| major cold shock protein Cspa1 [Yersinia pseudotuberculosis IP 32953] gi|152961413|gb|ABS48874.1| cold shock DNA-binding domain protein [Yersinia pseudotuberculosis IP 31758] gi|169749228|gb|ACA66746.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186700098|gb|ACC90727.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|186700099|gb|ACC90728.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] Length = 70 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAVNVIAL 70 >gi|15644431|ref|NP_229483.1| cold shock protein [Thermotoga maritima MSB8] gi|6225214|sp|O54310|CSP_THEMA RecName: Full=Cold shock-like protein gi|16974798|pdb|1G6P|A Chain A, Solution Nmr Structure Of The Cold Shock Protein From The Hyperthermophilic Bacterium Thermotoga Maritima gi|4982259|gb|AAD36750.1|AE001809_2 cold shock protein [Thermotoga maritima MSB8] gi|2894098|emb|CAA72105.1| cold shock protein [Thermotoga maritima MSB8] Length = 66 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++ KGYGFIT + G DVF+H SA+ G L EGQ+V ++ Q G Sbjct: 2 RGKVKWFDSKKGYGFITKD----EGGDVFVHWSAIEMEGFKTLKEGQVVEFEI-QEGKKG 56 Query: 64 KYSAENLKLVP 74 +A +K+V Sbjct: 57 PQAAH-VKVVE 66 >gi|120555467|ref|YP_959818.1| cold-shock DNA-binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120325316|gb|ABM19631.1| cold-shock DNA-binding protein family [Marinobacter aquaeolei VT8] Length = 179 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KG+GFI + SGD++F+H A+ G L +GQLV ++ V+ D Sbjct: 113 EEGTVKWFNVKKGFGFIVRD----SGDEIFVHFRAIRGRGRRVLRQGQLVRFNVVEADKG 168 Query: 63 GKYSAENLKLVPK 75 A+N+ ++ Sbjct: 169 --LQADNVSILSD 179 >gi|149911179|ref|ZP_01899804.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] gi|149805780|gb|EDM65777.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] Length = 68 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E +G DVF H SA+AS G L EGQ V + + Sbjct: 5 QGTVKWFNEAKGFGFIEQE----NGPDVFAHFSAIASEGFKTLVEGQKVEFTVGEGQKG- 59 Query: 64 KYSAENLKLV 73 +AEN+ + Sbjct: 60 -PNAENIVAI 68 >gi|153955498|ref|YP_001396263.1| hypothetical protein CKL_2880 [Clostridium kluyveri DSM 555] gi|219855901|ref|YP_002473023.1| hypothetical protein CKR_2558 [Clostridium kluyveri NBRC 12016] gi|146348356|gb|EDK34892.1| Hypothetical protein CKL_2880 [Clostridium kluyveri DSM 555] gi|219569625|dbj|BAH07609.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 65 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT E G DVF H S + S G L EGQ V++D + Sbjct: 2 TGTVKWFNGNKGFGFIT----GEDGKDVFAHFSQINSEGYKTLEEGQKVSFD--EGRGQK 55 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 56 GTQAENITVL 65 >gi|49082396|gb|AAT50598.1| PA3266 [synthetic construct] Length = 70 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFITPE SG+D+F+H ++ G +L EGQ V++ V Sbjct: 4 RQNGTVKWFNDAKGFGFITPE----SGNDLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQK 59 Query: 62 NGKYSAENLKLV 73 A+ +++V Sbjct: 60 G--LQADEVQVV 69 >gi|299065287|emb|CBJ36455.1| cold shock/stress protein, member of the Csp-family [Ralstonia solanacearum CMR15] Length = 67 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H S + +G L EGQ V Y Sbjct: 1 METGTVKWFNESKGFGFITPDA---GGNDLFAHFSEIQGSGFKTLQEGQKVRY-VAGVGQ 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPAA 61 >gi|302786020|ref|XP_002974781.1| hypothetical protein SELMODRAFT_58801 [Selaginella moellendorffii] gi|300157676|gb|EFJ24301.1| hypothetical protein SELMODRAFT_58801 [Selaginella moellendorffii] Length = 145 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 44/67 (65%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P +G+GFITP+ + D+F+H++++ + G +L EG++V Y V+ +G+ Sbjct: 1 GKVKWFSPTRGFGFITPD---DGSPDIFVHQTSIHAEGFRSLREGEIVEY-VVELGQDGR 56 Query: 65 YSAENLK 71 A N+ Sbjct: 57 MRAGNVT 63 >gi|170726448|ref|YP_001760474.1| cold-shock DNA-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169811795|gb|ACA86379.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC 51908] Length = 68 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKGYGFITPE + G D+F+H S + G L +GQ V +D + Sbjct: 1 MSKGTVKWFNADKGYGFITPE---DGGKDLFVHHSEIRSGGGYATLNDGQSVEFDVGEGQ 57 Query: 61 ANGKYSAENL 70 A N+ Sbjct: 58 KG--PCATNV 65 >gi|149374597|ref|ZP_01892371.1| cold-shock DNA-binding domain family protein [Marinobacter algicola DG893] gi|149361300|gb|EDM49750.1| cold-shock DNA-binding domain family protein [Marinobacter algicola DG893] Length = 68 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT E SG DVF+H SA+ G L EGQ V + Sbjct: 5 TGTVKFFNEAKGFGFITRE----SGPDVFVHYSAIQGGGFKTLAEGQQVEFTVTDGQKG- 59 Query: 64 KYSAENLKLV 73 AEN+ V Sbjct: 60 -PQAENVVAV 68 >gi|116781927|gb|ABK22299.1| unknown [Picea sitchensis] gi|148909032|gb|ABR17619.1| unknown [Picea sitchensis] gi|224285091|gb|ACN40273.1| unknown [Picea sitchensis] Length = 205 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KGYGFITP+ + +D+F+H++++ S G +L EG+ V Y V+++ G+ Sbjct: 8 GKVKWFDSTKGYGFITPD---DGSEDLFVHQTSIHSNGFRSLAEGEAVEY-TVEHENGGR 63 Query: 65 YSAENLK 71 A ++ Sbjct: 64 TKALDVT 70 >gi|76577745|gb|ABA54143.1| putative glycine-rich protein [Picea glauca] Length = 156 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KGYGFITP+ + +D+F+H++++ S G +L EG+ V Y V+++ G+ Sbjct: 8 GKVKWFDSTKGYGFITPD---DGSEDLFVHQTSIHSNGFRSLAEGEAVEY-TVEHENGGR 63 Query: 65 YSAENLK 71 A ++ Sbjct: 64 TKALDVT 70 >gi|15226451|ref|NP_179702.1| ATGRP2B (GLYCINE-RICH PROTEIN 2B); DNA binding / nucleic acid binding / zinc ion binding [Arabidopsis thaliana] gi|17366505|sp|Q38896|GRP2B_ARATH RecName: Full=Glycine-rich protein 2b; Short=AtGRP2b gi|1063684|gb|AAA91165.1| AtGRP2b [Arabidopsis thaliana] gi|4803937|gb|AAD29810.1| glycine-rich protein (AtGRP2) [Arabidopsis thaliana] gi|16323178|gb|AAL15323.1| At2g21060/F26H11.18 [Arabidopsis thaliana] gi|60543359|gb|AAX22277.1| At2g21060 [Arabidopsis thaliana] gi|330252023|gb|AEC07117.1| glycine-rich protein 2B [Arabidopsis thaliana] Length = 201 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G++KW++ KG+GFITP ++ GDD+F+H+S++ S G +L + V +D V+ D Sbjct: 14 RRKGTVKWFDTQKGFGFITP---SDGGDDLFVHQSSIRSEGFRSLAAEESVEFD-VEVDN 69 Query: 62 NGKYSAENLK 71 +G+ A + Sbjct: 70 SGRPKAIEVS 79 >gi|21230878|ref|NP_636795.1| major cold shock protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21242217|ref|NP_641799.1| major cold shock protein [Xanthomonas axonopodis pv. citri str. 306] gi|66769123|ref|YP_243885.1| major cold shock protein [Xanthomonas campestris pv. campestris str. 8004] gi|78047078|ref|YP_363253.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|188992271|ref|YP_001904281.1| cold shock protein [Xanthomonas campestris pv. campestris str. B100] gi|289662980|ref|ZP_06484561.1| major cold shock protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670169|ref|ZP_06491244.1| major cold shock protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325914001|ref|ZP_08176357.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] gi|325922910|ref|ZP_08184625.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC 19865] gi|325928751|ref|ZP_08189921.1| cold-shock DNA-binding protein family [Xanthomonas perforans 91-118] gi|21107638|gb|AAM36335.1| major cold shock protein [Xanthomonas axonopodis pv. citri str. 306] gi|21112487|gb|AAM40719.1| major cold shock protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574455|gb|AAY49865.1| major cold shock protein [Xanthomonas campestris pv. campestris str. 8004] gi|78035508|emb|CAJ23154.1| major cold shock protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|167734031|emb|CAP52237.1| cold shock protein [Xanthomonas campestris pv. campestris] gi|325539770|gb|EGD11410.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] gi|325540919|gb|EGD12491.1| cold-shock DNA-binding protein family [Xanthomonas perforans 91-118] gi|325546600|gb|EGD17739.1| cold-shock DNA-binding protein family [Xanthomonas gardneri ATCC 19865] Length = 71 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GFI+ E +G+DVF+H A+ G +L EGQ V++ VQ Sbjct: 6 RENGVVKWFNDAKGFGFISRE----NGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQK 61 Query: 62 NGKYSAENLKLV 73 A+ +++V Sbjct: 62 G--LQADAVQVV 71 >gi|26990715|ref|NP_746140.1| cold-shock protein CspD [Pseudomonas putida KT2440] gi|24985709|gb|AAN69604.1|AE016594_1 cold-shock protein CspD [Pseudomonas putida KT2440] Length = 88 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI EG ++ D+F H SA+ G L GQ V ++ VQ Sbjct: 1 MASGKVKWFNNAKGYGFINEEGKSD---DLFAHYSAIQMDGYKTLKAGQAVVFNIVQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|213423037|ref|ZP_03356055.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 55 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +G++KW+N KG+GFITPE + DVF+H SA+ + G L EGQ V ++ Sbjct: 3 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNG 55 >gi|126347669|emb|CAJ89383.1| putative cold shock protein [Streptomyces ambofaciens ATCC 23877] Length = 67 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A +G LTEG+ VT++ Q Sbjct: 1 MASGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSEIAGSGYRELTEGEHVTFEIGQGQK 57 Query: 62 NGKYSAENL 70 A+N+ Sbjct: 58 G--PQAQNI 64 >gi|297196882|ref|ZP_06914279.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] gi|197711514|gb|EDY55548.1| cold shock domain-containing protein CspD [Streptomyces sviceus ATCC 29083] Length = 67 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI +G G DVF H S +A+ G LTEG+ VT+D Q Sbjct: 1 MASGTVKWFNSEKGFGFIEQDG---GGPDVFAHYSEIAANGYRELTEGEHVTFDIGQGQK 57 Query: 62 NGKYSAENL 70 A+N+ Sbjct: 58 G--PQAQNI 64 >gi|222056386|ref|YP_002538748.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] gi|221565675|gb|ACM21647.1| cold-shock DNA-binding domain protein [Geobacter sp. FRC-32] Length = 66 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ E +G+DVF H SA++ G +L EG V ++ + Sbjct: 1 MVNGTVKWFNDSKGFGFLEQE----NGEDVFCHFSAISGEGFKSLAEGDRVQFEVTKG-P 55 Query: 62 NGKYSAENLKL 72 G +A ++ Sbjct: 56 KGLQAANVTRI 66 >gi|171778705|ref|ZP_02919801.1| hypothetical protein STRINF_00653 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282662|gb|EDT48086.1| hypothetical protein STRINF_00653 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 67 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N DKG+GFI+ E +G DVF H S + S G +L +GQ V +D Q + Sbjct: 1 MVQGTVKWFNTDKGFGFISQE----NGADVFAHFSQIKSNGFKSLEDGQKVQFDVEQGER 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--LQAVNI 63 >gi|170022693|ref|YP_001719198.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|169749227|gb|ACA66745.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] Length = 70 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ S L EGQ V + +N A G Sbjct: 6 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PAAVNVIAL 70 >gi|270261474|ref|ZP_06189747.1| hypothetical protein SOD_a07060 [Serratia odorifera 4Rx13] gi|270044958|gb|EFA18049.1| hypothetical protein SOD_a07060 [Serratia odorifera 4Rx13] Length = 70 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ S L EGQ V + ++ A G Sbjct: 6 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQRVEFTI-ESGAKG 61 Query: 64 KYSAENLKLV 73 SA N+ ++ Sbjct: 62 P-SAGNVVVL 70 >gi|332308080|ref|YP_004435931.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175409|gb|AEE24663.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 68 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKG+GFITPE + G D+F+H S + G L +GQ V ++ Q+ Sbjct: 1 MSKGTVKWFNADKGFGFITPE---DGGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQSP 57 Query: 61 ANGKYSAENLKLV 73 A N+ V Sbjct: 58 KG--PCANNVVPV 68 >gi|22125131|ref|NP_668554.1| cold shock protein [Yersinia pestis KIM 10] gi|45442244|ref|NP_993783.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001] gi|21957990|gb|AAM84805.1|AE013726_8 homolog of Salmonella cold shock protein [Yersinia pestis KIM 10] gi|45437108|gb|AAS62660.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001] Length = 80 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 16 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKG- 71 Query: 64 KYSAENL 70 SA N+ Sbjct: 72 -PSAVNV 77 >gi|51597265|ref|YP_071456.1| cold shock protein [Yersinia pseudotuberculosis IP 32953] gi|108808380|ref|YP_652296.1| cold shock protein [Yersinia pestis Antiqua] gi|108811305|ref|YP_647072.1| cold shock protein [Yersinia pestis Nepal516] gi|123441290|ref|YP_001005277.1| cold shock-like protein cspG [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145598899|ref|YP_001162975.1| cold shock protein [Yersinia pestis Pestoides F] gi|149365449|ref|ZP_01887484.1| cold shock protein [Yersinia pestis CA88-4125] gi|153949592|ref|YP_001400051.1| cold shock protein [Yersinia pseudotuberculosis IP 31758] gi|162420073|ref|YP_001607873.1| cold shock protein [Yersinia pestis Angola] gi|165925316|ref|ZP_02221148.1| cold shock protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939935|ref|ZP_02228473.1| cold shock protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008469|ref|ZP_02229367.1| cold shock protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212413|ref|ZP_02238448.1| cold shock protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167398538|ref|ZP_02304062.1| cold shock protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421189|ref|ZP_02312942.1| cold shock protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423656|ref|ZP_02315409.1| cold shock protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023370|ref|YP_001719875.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|186896369|ref|YP_001873481.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|218929733|ref|YP_002347608.1| cold shock protein [Yersinia pestis CO92] gi|229838213|ref|ZP_04458372.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895592|ref|ZP_04510763.1| cold shock protein [Yersinia pestis Pestoides A] gi|229898778|ref|ZP_04513923.1| cold shock protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901551|ref|ZP_04516673.1| cold shock protein [Yersinia pestis Nepal516] gi|270489738|ref|ZP_06206812.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|332162760|ref|YP_004299337.1| cold shock-like protein cspG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|61221540|sp|P0A362|CSPB_YERPE RecName: Full=Cold shock-like protein CspB gi|61221541|sp|P0A363|CSPB_YEREN RecName: Full=Cold shock-like protein CspB gi|3249024|gb|AAC24037.1| cold shock protein CspB [Yersinia enterocolitica] gi|51590547|emb|CAH22188.1| cold shock protein [Yersinia pseudotuberculosis IP 32953] gi|108774953|gb|ABG17472.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108780293|gb|ABG14351.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] gi|115348344|emb|CAL21278.1| cold shock protein [Yersinia pestis CO92] gi|122088251|emb|CAL11041.1| cold shock-like protein cspG [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145210595|gb|ABP40002.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|149291862|gb|EDM41936.1| cold shock protein [Yersinia pestis CA88-4125] gi|152961087|gb|ABS48548.1| cold shock protein [Yersinia pseudotuberculosis IP 31758] gi|162352888|gb|ABX86836.1| cold shock protein [Yersinia pestis Angola] gi|165912154|gb|EDR30793.1| cold shock protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922923|gb|EDR40074.1| cold shock protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992851|gb|EDR45152.1| cold shock protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206344|gb|EDR50824.1| cold shock protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166960678|gb|EDR56699.1| cold shock protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051042|gb|EDR62450.1| cold shock protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057826|gb|EDR67572.1| cold shock protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749904|gb|ACA67422.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186699395|gb|ACC90024.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|229681480|gb|EEO77574.1| cold shock protein [Yersinia pestis Nepal516] gi|229688326|gb|EEO80397.1| cold shock protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694579|gb|EEO84626.1| cold shock protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701398|gb|EEO89426.1| cold shock protein [Yersinia pestis Pestoides A] gi|270338242|gb|EFA49019.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|318606863|emb|CBY28361.1| cold shock protein CspG [Yersinia enterocolitica subsp. palearctica Y11] gi|320016134|gb|ADV99705.1| cold shock protein [Yersinia pestis biovar Medievalis str. Harbin 35] gi|325666990|gb|ADZ43634.1| cold shock-like protein cspG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859919|emb|CBX70249.1| cold shock-like protein cspB [Yersinia enterocolitica W22703] Length = 70 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 6 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKG- 61 Query: 64 KYSAENL 70 SA N+ Sbjct: 62 -PSAVNV 67 >gi|2970685|gb|AAC06037.1| cold shock protein C [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 69 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G KW+N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G Sbjct: 5 KGQGKWFNESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKG 60 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 61 P-AAVNVTAI 69 >gi|158522029|ref|YP_001529899.1| cold-shock DNA-binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158510855|gb|ABW67822.1| cold-shock DNA-binding domain protein [Desulfococcus oleovorans Hxd3] Length = 66 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI + S +DVF+H SA+ G L+EG V+++ D Sbjct: 1 MADGIVKWFNEKKGFGFIEVDES----NDVFVHYSAITMPGFKTLSEGDRVSFEIEDTDR 56 Query: 62 NGKYSAENL 70 +A+N+ Sbjct: 57 G--PAAKNV 63 >gi|50955729|ref|YP_063017.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952211|gb|AAT89912.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 73 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDANGK 64 ++KW+N KG+GFI P+ + DVF+H S +A+ G NL E Q V YD Q G Sbjct: 10 TVKWFNSKKGFGFIAPD---DGSTDVFVHYSEIAATGGYRNLDENQKVEYDLAQG-PKGP 65 Query: 65 YSAE 68 +A Sbjct: 66 QAAN 69 >gi|297613721|gb|ADI48290.1| cold-shock protein [Lactococcus piscium] Length = 54 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 4/58 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 + +G++KW+N +KG+GFIT G DVF+H SA+ + G L EGQ V YD Sbjct: 1 MAQGTVKWFNAEKGFGFIT----GADGKDVFVHFSAIQTDGFKTLEEGQAVNYDVEDG 54 >gi|114797581|ref|YP_759686.1| cold shock protein [Hyphomonas neptunium ATCC 15444] gi|114737755|gb|ABI75880.1| cold shock protein [Hyphomonas neptunium ATCC 15444] Length = 69 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KG+GFI+P T G+DVF+H S + +G+ +L EGQ V++D + Sbjct: 1 MTNGIVKFFNSQKGFGFISP---TNGGNDVFVHISTLERSGIAHLNEGQKVSFDTAIDKR 57 Query: 62 NGKYSAENLKL 72 +GK + ++L Sbjct: 58 SGKSAVSAIEL 68 >gi|82702264|ref|YP_411830.1| cold-shock DNA-binding domain-containing protein [Nitrosospira multiformis ATCC 25196] gi|82410329|gb|ABB74438.1| cold-shock DNA-binding protein family [Nitrosospira multiformis ATCC 25196] Length = 71 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 9/74 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYV 57 + G++KW+N KG+GFITP+ E +D+F H SA+ + G L EGQ VT++ Sbjct: 1 MATGTVKWFNGTKGFGFITPD---EGNEDLFAHFSAINIFGNTGGFKTLQEGQKVTFEIT 57 Query: 58 QNDANGKYSAENLK 71 N GK A N++ Sbjct: 58 -NGPKGKQ-ASNIQ 69 >gi|73539008|ref|YP_299375.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|116695865|ref|YP_841441.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] gi|300694434|ref|YP_003750407.1| cold shock/stress protein, member of the csp-family [Ralstonia solanacearum PSI07] gi|72122345|gb|AAZ64531.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] gi|113530364|emb|CAJ96711.1| cold shock protein, DNA-binding [Ralstonia eutropha H16] gi|299076471|emb|CBJ35788.1| cold shock/stress protein, member of the Csp-family [Ralstonia solanacearum PSI07] Length = 67 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H S + G +L EGQ V Y Sbjct: 1 METGTVKWFNDSKGFGFITPDA---GGNDLFAHFSEIQGNGFKSLQEGQKVRY-VAGVGQ 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPAA 61 >gi|56459145|ref|YP_154426.1| cold shock protein [Idiomarina loihiensis L2TR] gi|56178155|gb|AAV80877.1| Cold shock protein [Idiomarina loihiensis L2TR] Length = 68 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K++N KG+GFI E +G DVF+H SA+ S G L EGQ V++ Q Sbjct: 5 TGKVKFFNEAKGFGFIEQE----NGADVFVHFSAIQSDGFKTLAEGQQVSFTVAQGPKG- 59 Query: 64 KYSAENL 70 AEN+ Sbjct: 60 -PQAENV 65 >gi|77919964|ref|YP_357779.1| cold shock proteins [Pelobacter carbinolicus DSM 2380] gi|77546047|gb|ABA89609.1| cold-shock DNA-binding protein family [Pelobacter carbinolicus DSM 2380] Length = 66 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI + G DVF+H S + + G +LT+GQ V +D +++ Sbjct: 1 MAEGVVKWFNDAKGFGFIEQ----QDGPDVFVHFSVIQAEGFKSLTQGQQVEFDIIESQ- 55 Query: 62 NGKYSAENLKL 72 G + +KL Sbjct: 56 KGPQANNVIKL 66 >gi|15896242|ref|NP_349591.1| cold shock protein [Clostridium acetobutylicum ATCC 824] gi|15026046|gb|AAK80931.1|AE007796_1 Cold shock protein [Clostridium acetobutylicum ATCC 824] gi|325510397|gb|ADZ22033.1| Cold shock protein [Clostridium acetobutylicum EA 2018] Length = 65 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGFIT T+ G+DVF+H S + G L EGQ V +D + Sbjct: 3 GTVKWFNSQKGYGFIT----TQEGNDVFVHYSGIKDNGFKTLEEGQEVEFDLTEGQKG-- 56 Query: 65 YSAENL 70 A N+ Sbjct: 57 EQAVNV 62 >gi|206579907|ref|YP_002240730.1| 'cold-shock' DNA-binding domain protein [Klebsiella pneumoniae 342] gi|206568965|gb|ACI10741.1| 'cold-shock' DNA-binding domain protein [Klebsiella pneumoniae 342] Length = 72 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFI+P + D+F+H SA+ L EGQ V + + D Sbjct: 6 MGLVKWFNEDKGFGFISP---LDGSKDIFVHLSALNGDNFKTLFEGQKVEFAIHRGDKG- 61 Query: 64 KYSAENLKL 72 +A N+ L Sbjct: 62 -PAAANVTL 69 >gi|78188197|ref|YP_378535.1| cold-shock DNA-binding domain-containing protein [Chlorobium chlorochromatii CaD3] gi|78170396|gb|ABB27492.1| cold-shock DNA-binding protein family [Chlorobium chlorochromatii CaD3] Length = 69 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KGYGFI + G DVF+H SA+ +G L EGQ VT + VQ + Sbjct: 5 EGTVKWFNEEKGYGFIEQ----QGGKDVFVHYSAINGSGRKTLVEGQKVTMEVVQGEKG- 59 Query: 64 KYSAENLKLV 73 A ++ + Sbjct: 60 -LQASDVTPL 68 >gi|85374781|ref|YP_458843.1| cold shock protein [Erythrobacter litoralis HTCC2594] gi|84787864|gb|ABC64046.1| Cold shock protein [Erythrobacter litoralis HTCC2594] Length = 70 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKGYGFI P+ + D F+H SAV +AG+ L + Q + YD Q Sbjct: 1 MAKTGTVKFFNEDKGYGFIQPD---DGSADSFVHISAVQAAGMQTLDKEQRLNYDVEQG- 56 Query: 61 ANGKYSAENLK 71 NGK SA NL Sbjct: 57 RNGKESAVNLS 67 >gi|145219125|ref|YP_001129834.1| cold-shock DNA-binding protein family protein [Prosthecochloris vibrioformis DSM 265] gi|145205289|gb|ABP36332.1| cold-shock DNA-binding protein family [Chlorobium phaeovibrioides DSM 265] Length = 69 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KGYGFI G DVF+H SA+ +G L EGQ VT + Q D Sbjct: 6 EGTVKWFNEEKGYGFIQQ----SEGKDVFVHYSAINGSGRKTLVEGQKVTMEVSQGDKG- 60 Query: 64 KYSAENLKLV 73 A N+ + Sbjct: 61 -LQAGNVTPL 69 >gi|330994825|ref|ZP_08318747.1| Cold shock-like protein CspE [Gluconacetobacter sp. SXCC-1] gi|329758086|gb|EGG74608.1| Cold shock-like protein CspE [Gluconacetobacter sp. SXCC-1] Length = 229 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 3/64 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KWYN KG+GFITPE G D+F+H SA+ +GL LTEGQ V+ Sbjct: 165 RGTVKWYNAAKGFGFITPE---NGGKDIFVHASALERSGLSGLTEGQTANVQVVEGQKGP 221 Query: 64 KYSA 67 + +A Sbjct: 222 EAAA 225 Score = 66.9 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ ++ DVFLH +A+ G + G + Q G+ Sbjct: 60 TVKWFNSEKGFGFVE---LSDGSGDVFLHANALNPTGHATVAPGTTLVVQIGQG-PKGRQ 115 Query: 66 SAENLKLVPKSSN 78 A L + ++ Sbjct: 116 VAAVLSVDESTAQ 128 >gi|157370303|ref|YP_001478292.1| cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] gi|157322067|gb|ABV41164.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] Length = 70 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ S L EGQ V + +N G Sbjct: 6 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQRVEFTI-ENGQKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAGNVVVL 70 >gi|88857116|ref|ZP_01131759.1| Cold shock protein [Pseudoalteromonas tunicata D2] gi|88820313|gb|EAR30125.1| Cold shock protein [Pseudoalteromonas tunicata D2] Length = 69 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI SG DVF H SA++ G L EGQ V + Q Sbjct: 6 TGSVKWFNEAKGFGFIEQ----ASGPDVFAHFSAISGDGFKTLAEGQRVQFSVSQGQKG- 60 Query: 64 KYSAENL 70 A+N+ Sbjct: 61 -PQADNI 66 >gi|87119420|ref|ZP_01075317.1| Cold shock protein [Marinomonas sp. MED121] gi|86164896|gb|EAQ66164.1| Cold shock protein [Marinomonas sp. MED121] Length = 69 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT + G DVF+H SA+ S+G L EGQ V + + G Sbjct: 6 TGTVKFFNETKGFGFITQDK----GPDVFVHFSAINSSGFKTLAEGQKVEFQVA-DGKKG 60 Query: 64 KYSAENLKLV 73 A+N+ + Sbjct: 61 PE-AQNVTPL 69 >gi|238784838|ref|ZP_04628839.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970] gi|238714254|gb|EEQ06265.1| Cold shock-like protein cspI [Yersinia bercovieri ATCC 43970] Length = 70 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 6 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQGQKG- 61 Query: 64 KYSAENL 70 SA N+ Sbjct: 62 -PSAVNV 67 >gi|313901283|ref|ZP_07834770.1| cold shock protein CspB [Clostridium sp. HGF2] gi|312953891|gb|EFR35572.1| cold shock protein CspB [Clostridium sp. HGF2] Length = 65 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI + E G D+F+H S + G +L EGQ VT+D V +D Sbjct: 2 KGKVKWFNAEKGYGFI----NGEDGKDIFVHYSHIQQEGYKSLEEGQEVTFDTVDSDKG- 56 Query: 64 KYSAENLK 71 A N++ Sbjct: 57 -LQARNVE 63 >gi|325578326|ref|ZP_08148461.1| cold shock domain protein CspD [Haemophilus parainfluenzae ATCC 33392] gi|301156234|emb|CBW15705.1| cold shock protein homolog [Haemophilus parainfluenzae T3T1] gi|325160062|gb|EGC72191.1| cold shock domain protein CspD [Haemophilus parainfluenzae ATCC 33392] Length = 69 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI+ EG D+F H SA+ G +L GQ V ++ + D Sbjct: 1 MEIGVVKWFNNAKGFGFISAEGVD---TDIFAHYSAIEMDGYRSLKAGQRVQFEVIHGDK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|238755702|ref|ZP_04617036.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473] gi|238706069|gb|EEP98452.1| Cold shock-like protein cspI [Yersinia ruckeri ATCC 29473] Length = 66 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ S+ L EGQ V + Q Sbjct: 2 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSSDFKTLDEGQNVEFSIEQGQKG- 57 Query: 64 KYSAENL 70 SA N+ Sbjct: 58 -PSAVNV 63 >gi|302391875|ref|YP_003827695.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM 5501] gi|302203952|gb|ADL12630.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM 5501] Length = 110 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KGYGFI E GDD+F+H +A+ G +L E Q V+++ V++D Sbjct: 47 TGKVKWFDTKKGYGFIEQE----DGDDIFVHYTAIQEEGFKDLEEEQQVSFEVVESDKG- 101 Query: 64 KYSAENLKLV 73 AEN+ V Sbjct: 102 -LQAENVTKV 110 >gi|255324199|ref|ZP_05365321.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311741029|ref|ZP_07714854.1| cold shock protein CspA [Corynebacterium pseudogenitalium ATCC 33035] gi|255298715|gb|EET78010.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311303831|gb|EFQ79909.1| cold shock protein CspA [Corynebacterium pseudogenitalium ATCC 33035] Length = 67 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KGYGFI + D+F+H S + +G L E Q VT++ Sbjct: 1 MAQGTVKWFNSEKGYGFIER---ADGEGDIFVHYSEIQGSGFRTLEENQQVTFEVGSGPK 57 Query: 62 NGKYSAENLKLV 73 A+++ ++ Sbjct: 58 G--EQAQSVSVI 67 >gi|88857117|ref|ZP_01131760.1| Cold shock protein [Pseudoalteromonas tunicata D2] gi|88820314|gb|EAR30126.1| Cold shock protein [Pseudoalteromonas tunicata D2] Length = 69 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI SG DVF H SA++ G L EGQ V + Q Sbjct: 6 TGSVKWFNEAKGFGFIEQ----ASGPDVFAHFSAISGDGFKTLAEGQRVQFTVSQGQKG- 60 Query: 64 KYSAENL 70 A+N+ Sbjct: 61 -PQADNI 66 >gi|329894352|ref|ZP_08270222.1| putative cold-shock DNA-binding domain protein [gamma proteobacterium IMCC3088] gi|328923148|gb|EGG30471.1| putative cold-shock DNA-binding domain protein [gamma proteobacterium IMCC3088] Length = 70 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KGYGFI E ++ DVF+H ++ G L EGQ V + Sbjct: 7 GKVKWFNNAKGYGFIERENESD---DVFVHFRSIQGEGFRTLNEGQAVEFTLTTGPKG-- 61 Query: 65 YSAENL 70 AE++ Sbjct: 62 LQAEDV 67 >gi|260913997|ref|ZP_05920471.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260632084|gb|EEX50261.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 69 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFITP + G D+F+H S + L EG V Y VQ+ G Sbjct: 5 NGTVKWFNSDKGFGFITP---ADGGKDLFVHFSGIIGTSYRTLNEGDRVQYS-VQDSQRG 60 Query: 64 KYSAENLKLV 73 SA +++++ Sbjct: 61 P-SAIDVQVI 69 >gi|330890523|gb|EGH23184.1| cold shock domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 70 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW++ +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 4 RQSGTVKWFSDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQK 59 Query: 62 NGKYSAENLK 71 A+ ++ Sbjct: 60 G--MQADEVQ 67 >gi|149376382|ref|ZP_01894145.1| Cold shock protein [Marinobacter algicola DG893] gi|149359396|gb|EDM47857.1| Cold shock protein [Marinobacter algicola DG893] Length = 131 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ RG +KW+N KGYGFI EG ++ D+F H S+V G L GQ VT+D +D Sbjct: 24 IMPRGKVKWFNNAKGYGFIIEEGCSD---DLFAHFSSVQMEGYKTLKAGQAVTFDKKPSD 80 Query: 61 ANGKYSAENLKLVPKSS 77 + +VP+ Sbjct: 81 KG----IHAVNIVPEEQ 93 >gi|104783210|ref|YP_609708.1| cold shock protein CspE-like [Pseudomonas entomophila L48] gi|95112197|emb|CAK16924.1| putative cold shock protein CspE-like [Pseudomonas entomophila L48] Length = 69 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFI E G DVF+H A+ G L EGQ V Y VQ Sbjct: 4 RETGNVKWFNDAKGYGFIQRE----GGADVFVHYRAIRGEGHRTLVEGQQVEYALVQGQK 59 Query: 62 NGKYSAENL 70 AE++ Sbjct: 60 G--LQAEDV 66 >gi|293393437|ref|ZP_06637748.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] gi|291424038|gb|EFE97256.1| CspA family cold shock transcriptional regulator [Serratia odorifera DSM 4582] Length = 75 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ S L EGQ V + +N G Sbjct: 11 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFTI-ENGQKG 66 Query: 64 KYSAENLKL 72 + + L Sbjct: 67 PSAGNVVVL 75 >gi|83944783|ref|ZP_00957149.1| putative cold shock-like transcription regulator protein [Oceanicaulis alexandrii HTCC2633] gi|83851565|gb|EAP89420.1| putative cold shock-like transcription regulator protein [Oceanicaulis alexandrii HTCC2633] Length = 70 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N +KG+GFITP+ E DVF+H +AV AGL +L +GQ + ++ + Sbjct: 1 MTTGTVKFFNTEKGFGFITPD---EGDKDVFVHITAVKDAGLNDLRDGQRIEFETEPDRR 57 Query: 62 NGKYSAENLK 71 A NLK Sbjct: 58 GKGPKAVNLK 67 >gi|331005484|ref|ZP_08328862.1| cold-shock DNA-binding domain protein [gamma proteobacterium IMCC1989] gi|330420676|gb|EGG94964.1| cold-shock DNA-binding domain protein [gamma proteobacterium IMCC1989] Length = 68 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKG+GFITPE + G D+F+H S + G L +GQ V ++ Q Sbjct: 1 MSKGTVKWFNADKGFGFITPE---DGGKDLFVHHSEIKSGGGYATLNDGQAVEFEVGQGQ 57 Query: 61 ANGKYSAENL 70 A N+ Sbjct: 58 KG--PCANNV 65 >gi|149185796|ref|ZP_01864111.1| Cold shock protein [Erythrobacter sp. SD-21] gi|148830357|gb|EDL48793.1| Cold shock protein [Erythrobacter sp. SD-21] Length = 69 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKGYGFI P+ + D F+H SAV +AG+ L + Q + Y+ V+ Sbjct: 1 MTTGTVKFFNGDKGYGFIQPD---DGSADSFVHISAVQAAGMTTLDKDQRLNYE-VETGR 56 Query: 62 NGKYSAENLK 71 NGK SA NL Sbjct: 57 NGKASAVNLS 66 >gi|149185568|ref|ZP_01863884.1| Cold shock protein [Erythrobacter sp. SD-21] gi|148830788|gb|EDL49223.1| Cold shock protein [Erythrobacter sp. SD-21] Length = 70 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKGYGFI P+ + D F+H SAV +AG+ L + Q + Y+ Q Sbjct: 1 MAKTGTVKFFNSDKGYGFIQPD---DGSADSFVHISAVQAAGMQTLDKEQRLNYEVEQG- 56 Query: 61 ANGKYSAENLK 71 NGK SA N+ Sbjct: 57 RNGKESAVNIS 67 >gi|85710988|ref|ZP_01042049.1| Cold shock protein [Idiomarina baltica OS145] gi|85695392|gb|EAQ33329.1| Cold shock protein [Idiomarina baltica OS145] Length = 68 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K++N KG+GFI E +G DVF+H SA+ + G L EGQ V++ Q Sbjct: 5 TGKVKFFNEAKGFGFIEQE----NGADVFVHFSAIQADGFKTLAEGQQVSFTVAQGPKG- 59 Query: 64 KYSAENL 70 AEN+ Sbjct: 60 -PQAENV 65 >gi|293609525|ref|ZP_06691827.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827977|gb|EFF86340.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325122795|gb|ADY82318.1| cold shock-like protein [Acinetobacter calcoaceticus PHEA-2] Length = 69 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI + +G DVF H +A +G L EGQ VT+ Q G+ Sbjct: 7 GTVKWFNETKGFGFIQQD----NGPDVFAHFKEIAGSGFKTLHEGQRVTFTVTQ----GQ 58 Query: 65 YSAENLKLVPK 75 + ++P+ Sbjct: 59 KGPNAVNIIPQ 69 >gi|169796701|ref|YP_001714494.1| cold shock-like protein [Acinetobacter baumannii AYE] gi|215484188|ref|YP_002326415.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294] gi|169149628|emb|CAM87518.1| cold shock-like protein [Acinetobacter baumannii AYE] gi|213987146|gb|ACJ57445.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294] Length = 69 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 8/71 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI + SG DVF H +A++G L EGQ VT++ Q G+ Sbjct: 7 GTVKWFNETKGFGFIQQD----SGPDVFAHFKEIATSGFKTLYEGQRVTFNITQ----GQ 58 Query: 65 YSAENLKLVPK 75 + ++P+ Sbjct: 59 KGPNAVNIIPQ 69 >gi|28871129|ref|NP_793748.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|66044651|ref|YP_234492.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|71734613|ref|YP_275919.1| cold shock domain-contain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|302064187|ref|ZP_07255728.1| cold-shock domain-contain protein [Pseudomonas syringae pv. tomato K40] gi|28854379|gb|AAO57443.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|63255358|gb|AAY36454.1| Cold-shock protein, DNA-binding [Pseudomonas syringae pv. syringae B728a] gi|71555166|gb|AAZ34377.1| cold shock domain family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|320329669|gb|EFW85658.1| cold-shock domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330892234|gb|EGH24895.1| cold-shock domain-containing protein [Pseudomonas syringae pv. mori str. 301020] gi|331009339|gb|EGH89395.1| cold-shock domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 73 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 6 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVEFS-VMNRDKG 60 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 61 LQAEDVIAALPR 72 >gi|309777854|ref|ZP_07672800.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914415|gb|EFP60209.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 65 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KGYGFI + E G D+F+H S + G +L EGQ VT+D V +D Sbjct: 2 KGKVKWFNAEKGYGFI----NGEDGKDIFVHYSHIQQEGYKSLEEGQEVTFDAVDSDKG- 56 Query: 64 KYSAENLK 71 A N++ Sbjct: 57 -LQARNVE 63 >gi|304391865|ref|ZP_07373807.1| probable cold shock protein y4ch [Ahrensia sp. R2A130] gi|303296094|gb|EFL90452.1| probable cold shock protein y4ch [Ahrensia sp. R2A130] Length = 69 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K+YN KG+GFI P+ + G DVF+H +A+ GL L+EGQ V+++ + Sbjct: 1 MTSGTVKFYNDTKGFGFIQPD---DGGKDVFVHATALERNGLTGLSEGQKVSFETDMDPR 57 Query: 62 NGKYSAENLK 71 +GK + ++ Sbjct: 58 SGKPAVSKIE 67 >gi|26987835|ref|NP_743260.1| cold-shock domain-contain protein [Pseudomonas putida KT2440] gi|104780430|ref|YP_606928.1| cold shock protein CapB [Pseudomonas entomophila L48] gi|148546382|ref|YP_001266484.1| cold-shock DNA-binding domain-containing protein [Pseudomonas putida F1] gi|325275204|ref|ZP_08141171.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] gi|24982535|gb|AAN66724.1|AE016300_9 cold-shock domain family protein [Pseudomonas putida KT2440] gi|95109417|emb|CAK14117.1| cold shock protein CapB [Pseudomonas entomophila L48] gi|148510440|gb|ABQ77300.1| cold-shock DNA-binding protein family [Pseudomonas putida F1] gi|313497465|gb|ADR58831.1| CapB [Pseudomonas putida BIRD-1] gi|324099691|gb|EGB97570.1| cold-shock DNA-binding domain-containing protein [Pseudomonas sp. TJI-51] Length = 69 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N +KGYGFITP +SGDD+F+H A+ + G L EGQ VT+ + Sbjct: 4 RQSGVVKWFNDEKGYGFITP----QSGDDLFVHFKAIQADGFKTLKEGQAVTFVATRGQK 59 Query: 62 NGKYSAENLKL 72 AE +++ Sbjct: 60 G--MQAEEVQI 68 >gi|302392640|ref|YP_003828460.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] gi|302204717|gb|ADL13395.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] Length = 66 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ +KGYGFI DDVF+H SA+ G +L EG+ V ++ V+ D Sbjct: 1 METGTVKWFDSNKGYGFIERPEE----DDVFVHFSAIQEDGFKDLEEGEEVEFNIVEGD- 55 Query: 62 NGKYSAENLKL 72 G + + +KL Sbjct: 56 KGLQAEDVVKL 66 >gi|238759184|ref|ZP_04620352.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236] gi|238702600|gb|EEP95149.1| Cold shock-like protein cspI [Yersinia aldovae ATCC 35236] Length = 66 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 2 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKG- 57 Query: 64 KYSAENL 70 SA N+ Sbjct: 58 -PSAVNV 63 >gi|153216791|ref|ZP_01950615.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae 1587] gi|153800523|ref|ZP_01955109.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-3] gi|153828062|ref|ZP_01980729.1| putative cold-shock' DNA-binding domain [Vibrio cholerae 623-39] gi|229526634|ref|ZP_04416038.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426] gi|229528256|ref|ZP_04417647.1| cold shock transcriptional regulator CspA [Vibrio cholerae 12129(1)] gi|124114125|gb|EAY32945.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae 1587] gi|124123967|gb|EAY42710.1| cold-shock' DNA-binding domain, putative [Vibrio cholerae MZO-3] gi|148876471|gb|EDL74606.1| putative cold-shock' DNA-binding domain [Vibrio cholerae 623-39] gi|229334618|gb|EEO00104.1| cold shock transcriptional regulator CspA [Vibrio cholerae 12129(1)] gi|229336792|gb|EEO01810.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426] Length = 70 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF++ + GDDVF+H +++ S G L EGQ V+Y V+ G Sbjct: 6 TGSVKWFNETKGFGFLSQD---NGGDDVFVHFNSIVSTGFKTLAEGQKVSY-LVEKGKKG 61 Query: 64 KYSAENLKL 72 +AE L Sbjct: 62 LQAAEVTVL 70 >gi|262377343|ref|ZP_06070567.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] gi|262307796|gb|EEY88935.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] Length = 69 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF H S + +G L EGQ V++ Q G Sbjct: 6 NGTVKWFNETKGFGFIQQE----SGPDVFAHFSEITGSGFKTLVEGQKVSFSVAQGQ-KG 60 Query: 64 KYSAENLKL 72 + + L Sbjct: 61 PTAVNIVAL 69 >gi|125602073|gb|EAZ41398.1| hypothetical protein OsJ_25919 [Oryza sativa Japonica Group] Length = 91 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 44/66 (66%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KG+GFITP+ + G+D+F+H+S++ S G +L +G +V + + +G Sbjct: 7 KGTVKWFDATKGFGFITPD---DGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVG-SGNDG 62 Query: 64 KYSAEN 69 + A + Sbjct: 63 RTKAVD 68 >gi|15890768|ref|NP_356440.1| cold shock protein [Agrobacterium tumefaciens str. C58] gi|15159048|gb|AAK89225.1| cold shock protein [Agrobacterium tumefaciens str. C58] Length = 76 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++ DKG+GFITP+ G DVF+H SAV G +L +GQ V+Y+ Q+ Sbjct: 10 MATGTVKFFAQDKGFGFITPD---NGGPDVFVHISAVGFGG--SLQDGQKVSYELGQDRK 64 Query: 62 NGKYSAENLKLV 73 GK AEN+ L+ Sbjct: 65 TGKSKAENVTLL 76 >gi|315605470|ref|ZP_07880508.1| cold shock protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312816|gb|EFU60895.1| cold shock protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 69 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60 + G++KW+N KG+GFITP+ + DVF+H S + +G L EG+ V Y+ ++ Sbjct: 1 MTTGTVKWFNDAKGFGFITPDDRSV---DVFVHYSNIVGQSGRRTLMEGERVEYEAIEG- 56 Query: 61 ANGKYSAEN 69 G + + Sbjct: 57 PKGPQATDV 65 >gi|330807764|ref|YP_004352226.1| transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375872|gb|AEA67222.1| putative Transcription factor, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 69 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 GS+KW+N KGYGFI E G DVF+H A+ G +LTEGQ V Y V+ Sbjct: 4 RETGSVKWFNDAKGYGFIQRE----GGADVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQK 59 Query: 62 NGKYSAENL 70 AE++ Sbjct: 60 G--LQAEDV 66 >gi|296272840|ref|YP_003655471.1| cold-shock DNA-binding domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097014|gb|ADG92964.1| cold-shock DNA-binding domain protein [Arcobacter nitrofigilis DSM 7299] Length = 72 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 7/72 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFI E G DVF+H + S G +L EGQ VT++ + Sbjct: 6 NGTVKWFNSEKGFGFIEQE---NGGKDVFVHYRQINSTGYGRVSLNEGQKVTFEVAEGQK 62 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 63 G--PQAENVTAL 72 >gi|148244980|ref|YP_001219674.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA] gi|146326807|dbj|BAF61950.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA] Length = 67 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW++ KG+GFI E SG DVF+H A+ G +L EGQ V +D + Sbjct: 1 MSTTGKVKWFDAKKGFGFIEQE----SGGDVFVHFRAIQGDGYKSLEEGQEVEFDLEDGE 56 Query: 61 ANGKYSAENL 70 A N+ Sbjct: 57 KG--PQAVNV 64 >gi|77361880|ref|YP_341455.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|77362296|ref|YP_341870.1| cold shock protein [Pseudoalteromonas haloplanktis TAC125] gi|315122994|ref|YP_004065000.1| cold shock protein [Pseudoalteromonas sp. SM9913] gi|76876791|emb|CAI88013.1| RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|76877207|emb|CAI89424.1| Cold shock protein [Pseudoalteromonas haloplanktis TAC125] gi|315016754|gb|ADT70091.1| cold shock protein [Pseudoalteromonas sp. SM9913] Length = 69 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFI E SG DVF H SA++ G L EGQ V + Q Sbjct: 6 TGTVKFFNEAKGFGFIEQE----SGADVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -PQAENI 66 >gi|311694048|gb|ADP96921.1| cold-shock DNA-binding domain protein [marine bacterium HP15] Length = 199 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KG+GFI + SGD+VF+H A+ G L +GQLV ++ V+ D Sbjct: 133 EEGTVKWFNVKKGFGFIVRD----SGDEVFVHFRAIRGRGRRVLRQGQLVRFNVVEADKG 188 Query: 63 GKYSAENLKLVPK 75 A+N+ ++ Sbjct: 189 --LQADNVSILSD 199 >gi|189426058|ref|YP_001953235.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ] gi|189422317|gb|ACD96715.1| cold-shock DNA-binding domain protein [Geobacter lovleyi SZ] Length = 66 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GF+ E +G+DVF H SA+ G +L EG VT++ + Sbjct: 1 MVNGTVKWFNDSKGFGFLEQE----NGEDVFCHFSAITGEGFKSLAEGDRVTFEVTKGPK 56 Query: 62 NGKYSAENLKLV 73 A N+ + Sbjct: 57 G--LQASNVTRI 66 >gi|296394808|ref|YP_003659692.1| cold-shock DNA-binding domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181955|gb|ADG98861.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM 44985] Length = 68 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + +G++KW+N +KG+GFI P+ + G D+F+H S + S G L E Q V ++ +D Sbjct: 1 MPQGTVKWFNEEKGFGFIAPD---DGGKDLFVHFSGIVSEGGFRTLQENQRVKFETQASD 57 Query: 61 ANGKYSAENLKLV 73 A ++ ++ Sbjct: 58 RG--PQAVSVTVI 68 >gi|269961818|ref|ZP_06176175.1| cold shock domain family protein [Vibrio harveyi 1DA3] gi|269833396|gb|EEZ87498.1| cold shock domain family protein [Vibrio harveyi 1DA3] Length = 70 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF+T + G DVF+H +A+ + G L EGQ V+++ V++ G Sbjct: 6 TGSVKWFNETKGFGFLTQD---NGGQDVFVHFNAIVADGFKTLAEGQKVSFN-VEDGKKG 61 Query: 64 KYSAENLKL 72 + E L Sbjct: 62 PQATEVTPL 70 >gi|257468871|ref|ZP_05632965.1| cold shock protein [Fusobacterium ulcerans ATCC 49185] gi|317063120|ref|ZP_07927605.1| cold shock protein [Fusobacterium ulcerans ATCC 49185] gi|313688796|gb|EFS25631.1| cold shock protein [Fusobacterium ulcerans ATCC 49185] Length = 65 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFIT E G D+F H S + G L E + VTYD ++ Sbjct: 2 KGTVKWFNQEKGFGFIT----GEDGKDIFAHFSQIQKDGFKTLNENEEVTYDVIEGQKG- 56 Query: 64 KYSAENLKL 72 A N+K+ Sbjct: 57 -PQAANIKV 64 >gi|148379362|ref|YP_001253903.1| major cold shock protein [Clostridium botulinum A str. ATCC 3502] gi|153931072|ref|YP_001383738.1| major cold shock protein [Clostridium botulinum A str. ATCC 19397] gi|153936819|ref|YP_001387287.1| major cold shock protein [Clostridium botulinum A str. Hall] gi|153940797|ref|YP_001390748.1| major cold shock protein [Clostridium botulinum F str. Langeland] gi|168180058|ref|ZP_02614722.1| major cold shock protein [Clostridium botulinum NCTC 2916] gi|170756947|ref|YP_001781039.1| major cold shock protein [Clostridium botulinum B1 str. Okra] gi|170760431|ref|YP_001786775.1| major cold shock protein [Clostridium botulinum A3 str. Loch Maree] gi|226948665|ref|YP_002803756.1| major cold shock protein [Clostridium botulinum A2 str. Kyoto] gi|148288846|emb|CAL82930.1| cold shock protein [Clostridium botulinum A str. ATCC 3502] gi|152927116|gb|ABS32616.1| major cold shock protein CspA [Clostridium botulinum A str. ATCC 19397] gi|152932733|gb|ABS38232.1| major cold shock protein CspA [Clostridium botulinum A str. Hall] gi|152936693|gb|ABS42191.1| major cold shock protein [Clostridium botulinum F str. Langeland] gi|169122159|gb|ACA45995.1| major cold shock protein CspA [Clostridium botulinum B1 str. Okra] gi|169407420|gb|ACA55831.1| major cold shock protein CspA [Clostridium botulinum A3 str. Loch Maree] gi|182669023|gb|EDT80999.1| major cold shock protein [Clostridium botulinum NCTC 2916] gi|226843516|gb|ACO86182.1| major cold shock protein [Clostridium botulinum A2 str. Kyoto] gi|295318821|gb|ADF99198.1| major cold shock protein [Clostridium botulinum F str. 230613] Length = 67 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + G++KW+N +KG+GFI EG DVF+H SA+ NL EGQ V ++ V+ Sbjct: 1 MKTGTVKWFNSEKGFGFIEVEGE----KDVFVHFSAIQGDEPRKNLEEGQKVQFE-VEEG 55 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 56 QKGPQAANVIKL 67 >gi|85375609|ref|YP_459671.1| cold shock protein [Erythrobacter litoralis HTCC2594] gi|84788692|gb|ABC64874.1| cold shock protein [Erythrobacter litoralis HTCC2594] Length = 253 Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFI EG G+DVF+H SAV AGL L EGQ + ++ V D G Sbjct: 98 KGTVKFFNGQKGFGFIQQEG---GGEDVFVHISAVERAGLDGLAEGQELEFNLV--DRGG 152 Query: 64 KYSAENLKLV 73 K SA++L++V Sbjct: 153 KVSAQDLQVV 162 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GF+ + + D F+H SAV +GL + EG+ +D + D G Sbjct: 186 TGTVKFFNSMKGFGFLVRD---DGQPDAFVHISAVERSGLSGIDEGERYEFDL-EVDRRG 241 Query: 64 KYSAENLKLVPK 75 KYSA NL V + Sbjct: 242 KYSAVNLVPVQE 253 >gi|238750463|ref|ZP_04611964.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380] gi|238790115|ref|ZP_04633892.1| Cold shock-like protein cspI [Yersinia frederiksenii ATCC 33641] gi|238794420|ref|ZP_04638030.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909] gi|238711394|gb|EEQ03611.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380] gi|238721784|gb|EEQ13447.1| Cold shock-like protein cspI [Yersinia frederiksenii ATCC 33641] gi|238726215|gb|EEQ17759.1| Cold shock-like protein cspI [Yersinia intermedia ATCC 29909] Length = 66 Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 2 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTDYKTLDEGQNVEFSIEQGQKG- 57 Query: 64 KYSAENL 70 SA N+ Sbjct: 58 -PSAVNV 63 >gi|220923754|ref|YP_002499056.1| cold-shock DNA-binding domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219948361|gb|ACL58753.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans ORS 2060] Length = 69 Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K+YN KG+GFI PE + DVF+H +A+ AGL +L++GQ V++D ++ Sbjct: 1 MTIGIVKFYNDQKGFGFIQPE---DGSKDVFVHATALERAGLGSLSQGQKVSFDTAEDRR 57 Query: 62 NGKYSAENLK 71 +GK + N++ Sbjct: 58 SGKMAVNNIQ 67 >gi|126641275|ref|YP_001084259.1| cold shock protein [Acinetobacter baumannii ATCC 17978] gi|169796561|ref|YP_001714354.1| cold shock-like protein [Acinetobacter baumannii AYE] gi|184157530|ref|YP_001845869.1| cold shock protein [Acinetobacter baumannii ACICU] gi|213156325|ref|YP_002318745.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii AB0057] gi|215484022|ref|YP_002326247.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB307-0294] gi|239503700|ref|ZP_04663010.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB900] gi|260558025|ref|ZP_05830237.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] gi|332854616|ref|ZP_08435438.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150] gi|332867722|ref|ZP_08437811.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113] gi|332875420|ref|ZP_08443246.1| cold shock-like protein CspE [Acinetobacter baumannii 6014059] gi|126387159|gb|ABO11657.1| Cold shock protein [Acinetobacter baumannii ATCC 17978] gi|169149488|emb|CAM87376.1| cold shock-like protein [Acinetobacter baumannii AYE] gi|183209124|gb|ACC56522.1| Cold shock protein [Acinetobacter baumannii ACICU] gi|213055485|gb|ACJ40387.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii AB0057] gi|213988970|gb|ACJ59269.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB307-0294] gi|260408535|gb|EEX01841.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] gi|322507844|gb|ADX03298.1| Cold shock protein [Acinetobacter baumannii 1656-2] gi|323517444|gb|ADX91825.1| cold shock protein [Acinetobacter baumannii TCDC-AB0715] gi|332727900|gb|EGJ59299.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150] gi|332733806|gb|EGJ64957.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113] gi|332736356|gb|EGJ67357.1| cold shock-like protein CspE [Acinetobacter baumannii 6014059] Length = 71 Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI T+ G DVF H S + + G L EGQ V + Q Sbjct: 5 TGTVKWFNETKGFGFIQ----TDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQGKKG- 59 Query: 64 KYSAENLKLV 73 A N+ +V Sbjct: 60 -PQASNITIV 68 >gi|126667266|ref|ZP_01738239.1| Cold shock protein [Marinobacter sp. ELB17] gi|126628211|gb|EAZ98835.1| Cold shock protein [Marinobacter sp. ELB17] Length = 77 Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G +KW+N KGYGFI +G + D+F H SA+ G L GQ V+++ Sbjct: 1 MPSGKVKWFNNAKGYGFIIEDGYND---DLFAHFSAIQMDGYKTLKAGQAVSFE 51 >gi|261493105|ref|ZP_05989643.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494856|ref|ZP_05991333.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309480|gb|EEY10706.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311240|gb|EEY12405.1| cold shock-like protein CspD [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 72 Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + D+F H S + + G +L GQ V ++ VQ + Sbjct: 1 MDIGIVKWFNNVKGFGFITSDVCE---GDIFAHFSEIQAEGYRSLKVGQKVQFELVQGER 57 Query: 62 NGKYSAENLKLVPKSS 77 SA N+ + + + Sbjct: 58 G--ASASNITPISEKT 71 >gi|119469733|ref|ZP_01612602.1| Cold shock protein [Alteromonadales bacterium TW-7] gi|119446980|gb|EAW28251.1| Cold shock protein [Alteromonadales bacterium TW-7] Length = 69 Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFI E SG DVF H SA++ G L EGQ V + Q Sbjct: 6 TGTVKFFNEAKGFGFIEQE----SGPDVFAHFSAISGDGFKTLAEGQRVQFTVTQGQKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -PQAENI 66 >gi|260550026|ref|ZP_05824241.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter sp. RUH2624] gi|260407018|gb|EEX00496.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter sp. RUH2624] Length = 71 Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI T+ G DVF H S + + G L EGQ V + Q Sbjct: 5 TGTVKWFNETKGFGFIQ----TDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQGKKG- 59 Query: 64 KYSAENLKLV 73 A N+ +V Sbjct: 60 -PQASNITIV 68 >gi|118579190|ref|YP_900440.1| cold-shock DNA-binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501900|gb|ABK98382.1| cold-shock DNA-binding protein family [Pelobacter propionicus DSM 2379] Length = 67 Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI + + DVF+H SA+ +G L EG+ VTY+ V+ Sbjct: 1 MATGTVKWFNESKGFGFIEQD---DGSGDVFVHFSAITGSGFKTLAEGEKVTYNVVKGPK 57 Query: 62 NGKYSAENLK 71 AE ++ Sbjct: 58 G--LQAEEVQ 65 >gi|229588789|ref|YP_002870908.1| major cold shock protein [Pseudomonas fluorescens SBW25] gi|229360655|emb|CAY47513.1| major cold shock protein [Pseudomonas fluorescens SBW25] Length = 69 Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFI E G DVF+H A+ G +L EGQ V Y V + Sbjct: 4 RETGNVKWFNDAKGYGFIQRE----DGKDVFVHYRAIRGEGHRSLAEGQQVEYAVVTGEK 59 Query: 62 NGKYSAENL 70 AE++ Sbjct: 60 G--LQAEDV 66 >gi|89092942|ref|ZP_01165894.1| cold shock domain protein CspD [Oceanospirillum sp. MED92] gi|89082967|gb|EAR62187.1| cold shock domain protein CspD [Oceanospirillum sp. MED92] Length = 70 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI + E +D+F H SA+ G +L GQ V ++ Sbjct: 1 MQTGKVKWFNNSKGYGFILSD---EHAEDLFAHYSAIDVDGYKSLKAGQAVEFET----K 53 Query: 62 NGKYSAENLKLVPKSSN 78 G +++ P + Sbjct: 54 PGPKGTHAVQIKPLETQ 70 >gi|153833621|ref|ZP_01986288.1| putative cold-shock' DNA-binding domain [Vibrio harveyi HY01] gi|156977630|ref|YP_001448536.1| hypothetical protein VIBHAR_06418 [Vibrio harveyi ATCC BAA-1116] gi|148870019|gb|EDL68974.1| putative cold-shock' DNA-binding domain [Vibrio harveyi HY01] gi|156529224|gb|ABU74309.1| hypothetical protein VIBHAR_06418 [Vibrio harveyi ATCC BAA-1116] Length = 70 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF+T + G DVF+H +A+ + G LTEGQ V+++ V++ G Sbjct: 6 TGSVKWFNETKGFGFLTQD---NGGQDVFVHFNAIVADGFKTLTEGQKVSFN-VEDGKKG 61 Query: 64 KYSAENLKL 72 + E L Sbjct: 62 PQATEVTPL 70 >gi|89093876|ref|ZP_01166821.1| cold-shock domain family protein [Oceanospirillum sp. MED92] gi|89081762|gb|EAR60989.1| cold-shock domain family protein [Oceanospirillum sp. MED92] Length = 149 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G++KW+N KG+GFIT DDVF+H + G +L EGQ V + ++D Sbjct: 82 REQGTVKWFNVSKGFGFITRGED----DDVFVHFRNIRGRGHRSLAEGQKVRFYVRESDK 137 Query: 62 NGKYSAENLKLV 73 AE++ +V Sbjct: 138 G--LQAEDVSVV 147 >gi|94500755|ref|ZP_01307284.1| cold-shock DNA-binding domain family protein [Oceanobacter sp. RED65] gi|94427077|gb|EAT12058.1| cold-shock DNA-binding domain family protein [Oceanobacter sp. RED65] Length = 68 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H S + G L EGQ V + Q Sbjct: 5 TGTVKWFNEAKGFGFIAQE----NGPDVFAHFSEIQGEGFKTLAEGQAVEFIVTQGQKGP 60 Query: 64 K 64 + Sbjct: 61 Q 61 >gi|325115241|emb|CBZ50796.1| lin-28 homolog B, related [Neospora caninum Liverpool] Length = 133 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V RG+ KW++ KGYGFIT E G D+F+H+S + + G NL EG+ V + +Q Sbjct: 3 VSRGTCKWFDSKKGYGFIT----AEDGTDLFVHQSEIRAEGFRNLAEGEQVEF-VIQTGN 57 Query: 62 NGKYSAENLK 71 +G+ A N+ Sbjct: 58 DGRKKAVNVT 67 >gi|293604627|ref|ZP_06687029.1| cold-shock domain family protein [Achromobacter piechaudii ATCC 43553] gi|292816958|gb|EFF76037.1| cold-shock domain family protein [Achromobacter piechaudii ATCC 43553] Length = 69 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N DKGYGFI+PE G D+F H S + G +L E Q V++ Q Sbjct: 3 IETGIVKWFNNDKGYGFISPEL---GGKDLFAHYSEIQGDGHKSLEENQRVSFVAGQGQK 59 Query: 62 NGK 64 + Sbjct: 60 GPQ 62 >gi|303246711|ref|ZP_07332989.1| cold-shock DNA-binding domain protein [Desulfovibrio fructosovorans JJ] gi|302492051|gb|EFL51929.1| cold-shock DNA-binding domain protein [Desulfovibrio fructosovorans JJ] Length = 68 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW++ KGYGFI EG DDVF+H S++ G L EG+LV +D +Q + Sbjct: 1 MGFEGTVKWFSDKKGYGFIMREGE----DDVFVHYSSIEGEGFRTLREGELVQFDIIQGE 56 Query: 61 ANGKYSAENLK 71 G + +K Sbjct: 57 -RGPKATNVVK 66 >gi|119477239|ref|ZP_01617475.1| cold-shock DNA-binding domain family protein [marine gamma proteobacterium HTCC2143] gi|119449602|gb|EAW30840.1| cold-shock DNA-binding domain family protein [marine gamma proteobacterium HTCC2143] Length = 68 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60 + +G++KW+NPDKG+GFITPE + G D+F+H S + G L +GQ V ++ Q Sbjct: 1 MSKGTVKWFNPDKGFGFITPE---DGGKDLFVHHSEIQSGGGFATLNDGQDVEFEVGQGQ 57 Query: 61 ANG 63 Sbjct: 58 KGP 60 >gi|307136096|gb|ADN33944.1| cold-shock DNA-binding family protein [Cucumis melo subsp. melo] Length = 272 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G ++W+N KG+GFI P+ G D+F+H+S++ S G +L G V + D Sbjct: 7 TGVVQWFNDSKGFGFIKPDVE---GPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63 Query: 64 KYSAENLKLVPKSSN 78 + E + L S N Sbjct: 64 SKAIEVVALDGSSGN 78 >gi|307944227|ref|ZP_07659568.1| putative cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4] gi|307772573|gb|EFO31793.1| putative cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4] Length = 289 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +K++ DKG+GFITP+ E DVF+H SAV +G+ L GQ V+++ + Sbjct: 210 RQNGIVKFFKSDKGFGFITPD---EGDADVFVHISAVERSGMTTLDSGQRVSFETEPDRR 266 Query: 62 NGKYSAENLKLVPK 75 A NL+ + + Sbjct: 267 GKGPKAVNLQELSE 280 >gi|323141266|ref|ZP_08076162.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT 12067] gi|322414223|gb|EFY05046.1| major cold shock protein CspA [Phascolarctobacterium sp. YIT 12067] Length = 66 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +KGYGFI E G D+F+H S + S G L EG V +D +Q D Sbjct: 2 TGKVKWFNAEKGYGFIQRE----GGKDLFVHFSGIKSEGFKTLEEGWNVEFDVIQGDRG- 56 Query: 64 KYSAENL 70 A N+ Sbjct: 57 -EQATNV 62 >gi|332856166|ref|ZP_08436156.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150] gi|332871668|ref|ZP_08440139.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113] gi|332727143|gb|EGJ58603.1| cold shock-like protein CspE [Acinetobacter baumannii 6013150] gi|332731306|gb|EGJ62602.1| cold shock-like protein CspE [Acinetobacter baumannii 6013113] Length = 83 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI + G DVF H ++S+G L EGQ V+++ Q Sbjct: 21 GTVKWFNETKGFGFIQQDT----GPDVFAHFKEISSSGFKTLYEGQRVSFNIAQGQKG-- 74 Query: 65 YSAENL 70 +A N+ Sbjct: 75 PTATNI 80 >gi|193788570|ref|NP_001123330.1| zinc finger protein ZF(CCHC)-17 [Ciona intestinalis] gi|93003148|tpd|FAA00157.1| TPA: zinc finger protein [Ciona intestinalis] Length = 193 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+ KW+N +GYGFITP+ S++ DVF+H+S++ G +L EG V + Y + G Sbjct: 29 GNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSIDMEGFRSLQEGDRVKFWY-KPSKKGL 87 Query: 65 YSAENL 70 + + + Sbjct: 88 EAVKVV 93 >gi|77166067|ref|YP_344592.1| cold-shock protein, DNA-binding [Nitrosococcus oceani ATCC 19707] gi|76884381|gb|ABA59062.1| cold-shock DNA-binding protein family [Nitrosococcus oceani ATCC 19707] Length = 69 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KGYGFI E G D+F+H ++ +G L EGQ V++ VQ Sbjct: 5 QTGTVKWFNDSKGYGFIQRE----GGSDLFVHYRSITGSGHRTLKEGQQVSFIEVQGQKG 60 Query: 63 GKYSAENLKLV 73 A+++ ++ Sbjct: 61 --PQADDVTIL 69 >gi|53804855|ref|YP_113293.1| cold shock protein [Methylococcus capsulatus str. Bath] gi|53758616|gb|AAU92907.1| cold shock protein [Methylococcus capsulatus str. Bath] Length = 69 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW+N KG+GFI E +G D+F+H ++ G L EGQ V++ V Sbjct: 5 QQGTVKWFNESKGFGFIQRE----NGSDLFVHFRSIQGQGFKTLKEGQRVSFTEVAGQKG 60 Query: 63 GKYSAENLKLV 73 AEN+ ++ Sbjct: 61 --PQAENVVVL 69 >gi|71065101|ref|YP_263828.1| cold-shock DNA-binding protein family protein [Psychrobacter arcticus 273-4] gi|93005356|ref|YP_579793.1| cold-shock DNA-binding domain-containing protein [Psychrobacter cryohalolentis K5] gi|71038086|gb|AAZ18394.1| cold-shock DNA-binding protein family [Psychrobacter arcticus 273-4] gi|92393034|gb|ABE74309.1| cold-shock DNA-binding protein family [Psychrobacter cryohalolentis K5] gi|118185010|gb|ABK76501.1| CspA-like protein [Psychrobacter sp. B6] Length = 70 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI + G DVF H SA+ G L EGQ V++ + D Sbjct: 6 EGTVKWFNEAKGFGFIAQD---NGGQDVFAHYSAIQGGGFKTLAEGQKVSF--ILGDGKK 60 Query: 64 KYSAENLKLV 73 AE ++ + Sbjct: 61 GPQAEQIEAI 70 >gi|224105199|ref|XP_002313723.1| predicted protein [Populus trichocarpa] gi|222850131|gb|EEE87678.1| predicted protein [Populus trichocarpa] Length = 66 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 45/67 (67%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFITP+ + GDD+F+H+S++ S G +L +G+ V ++ +N +G+ Sbjct: 1 GKVKWFSDQKGFGFITPD---DGGDDLFVHQSSIKSEGYRSLGDGEEVEFEI-ENSDDGR 56 Query: 65 YSAENLK 71 A N+ Sbjct: 57 TKAANVT 63 >gi|238796661|ref|ZP_04640167.1| Cold shock-like protein cspB [Yersinia mollaretii ATCC 43969] gi|238719392|gb|EEQ11202.1| Cold shock-like protein cspB [Yersinia mollaretii ATCC 43969] Length = 66 Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 2 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGTEYKTLDEGQNVEFSIEQGQKG- 57 Query: 64 KYSAENL 70 SA N+ Sbjct: 58 -PSAVNV 63 >gi|116748179|ref|YP_844866.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697243|gb|ABK16431.1| cold-shock DNA-binding protein family [Syntrophobacter fumaroxidans MPOB] Length = 67 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI T+ DVF+H SA+ + G +L+EG+ V+++ + Sbjct: 1 MPEGRVKWFNDKKGYGFIE----TKDQGDVFVHHSAILAEGFRSLSEGEKVSFEVERGPK 56 Query: 62 NGKYSAENLKLVP 74 A +K +P Sbjct: 57 G--PQAVRVKKIP 67 >gi|262278468|ref|ZP_06056253.1| predicted protein [Acinetobacter calcoaceticus RUH2202] gi|299769413|ref|YP_003731439.1| Cold shock-like protein cspG [Acinetobacter sp. DR1] gi|262258819|gb|EEY77552.1| predicted protein [Acinetobacter calcoaceticus RUH2202] gi|298699501|gb|ADI90066.1| Cold shock-like protein cspG [Acinetobacter sp. DR1] Length = 69 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 8/71 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI + +G DVF H ++ +G L EGQ VT+ Q G+ Sbjct: 7 GTVKWFNETKGFGFIQQD----NGPDVFAHFKEISGSGFKTLHEGQRVTFTVTQ----GQ 58 Query: 65 YSAENLKLVPK 75 + ++P+ Sbjct: 59 KGPNAVNIIPQ 69 >gi|330683909|gb|EGG95678.1| cold shock protein CspD [Staphylococcus epidermidis VCU121] Length = 58 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW+N DKG+GFI +G+DVF+H S +A G +L EGQ V +D ++ Sbjct: 1 MNNGTVKWFNADKGFGFIE----RGNGNDVFVHYSGIAGEGYKSLEEGQNVDFDIIEGQR 56 Query: 62 N 62 Sbjct: 57 G 57 >gi|262376304|ref|ZP_06069534.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] gi|262308905|gb|EEY90038.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] Length = 71 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G +KW+N KG+GFI GDDVF+H A+ G +L +GQ V + V+ Sbjct: 5 REQGVVKWFNDTKGFGFIQ----RNGGDDVFVHFRAIQGDGHRSLRDGQRVEFSVVKGQK 60 Query: 62 NGKYSAENLKLV 73 + AE ++ + Sbjct: 61 G--FQAEEVQPL 70 >gi|262376813|ref|ZP_06070040.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] gi|262308158|gb|EEY89294.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] Length = 71 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E SG DVF H S +AS+G L EGQLV + Q Sbjct: 8 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEIASSGFKTLMEGQLVEFSVAQGQKG- 62 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 63 -PNAVNIVAI 71 >gi|91224056|ref|ZP_01259319.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] gi|269966375|ref|ZP_06180460.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 40B] gi|91190967|gb|EAS77233.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 12G01] gi|269828962|gb|EEZ83211.1| cold shock transcriptional regulator CspA [Vibrio alginolyticus 40B] Length = 69 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF++ + G DVF+H +A+ S G LTEGQ V+++ Q G Sbjct: 5 TGSVKWFNETKGFGFLSQD---NGGQDVFVHFNAIVSDGFKTLTEGQKVSFNVEQG-KKG 60 Query: 64 KYSAENLKL 72 + E L Sbjct: 61 PQATEVTPL 69 >gi|90962044|ref|YP_535960.1| cold shock protein [Lactobacillus salivarius UCC118] gi|227891063|ref|ZP_04008868.1| cold shock protein [Lactobacillus salivarius ATCC 11741] gi|301300924|ref|ZP_07207096.1| cold shock-like protein CspE [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821238|gb|ABD99877.1| Cold shock protein [Lactobacillus salivarius UCC118] gi|227867152|gb|EEJ74573.1| cold shock protein [Lactobacillus salivarius ATCC 11741] gi|300851523|gb|EFK79235.1| cold shock-like protein CspE [Lactobacillus salivarius ACS-116-V-Col5a] Length = 69 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 5/74 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ +N +KG+GFITP+ S + DVF+H SA+ + G L EGQ V + ++ Sbjct: 1 MILGTVHKFNREKGFGFITPDDSKD---DVFVHFSAIQTEGFKTLQEGQRVGFVTIEG-K 56 Query: 62 NGKYSAENLKLVPK 75 G +A N++L+ Sbjct: 57 RGPQAA-NVELISD 69 >gi|153955581|ref|YP_001396346.1| hypothetical protein CKL_2966 [Clostridium kluyveri DSM 555] gi|219855966|ref|YP_002473088.1| hypothetical protein CKR_2623 [Clostridium kluyveri NBRC 12016] gi|146348439|gb|EDK34975.1| Hypothetical protein CKL_2966 [Clostridium kluyveri DSM 555] gi|219569690|dbj|BAH07674.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 65 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFIT E G+D+F H S + S G L EGQ V++D + Sbjct: 2 TGTVKWFNGNKGFGFIT----GEDGNDIFAHFSQINSQGYKTLEEGQKVSFD--EGRGQK 55 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 56 GTQAENITVL 65 >gi|56459785|ref|YP_155066.1| cold shock protein [Idiomarina loihiensis L2TR] gi|56178795|gb|AAV81517.1| Cold shock protein [Idiomarina loihiensis L2TR] Length = 71 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI E D+F H S + G L GQ V ++ + Sbjct: 1 MATGKVKWFNNSKGFGFIESEDRE---GDIFAHYSTIEMEGYRTLKAGQPVEFELEEGPK 57 Query: 62 NGKYSAENLKLVPKSSN 78 A N+ VP +++ Sbjct: 58 G--LHANNI--VPGAAD 70 >gi|28901144|ref|NP_800799.1| cold shock transcriptional regulator CspA [Vibrio parahaemolyticus RIMD 2210633] gi|153838855|ref|ZP_01991522.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus AQ3810] gi|260362706|ref|ZP_05775575.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus K5030] gi|260879992|ref|ZP_05892347.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AN-5034] gi|260894667|ref|ZP_05903163.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus Peru-466] gi|260900524|ref|ZP_05908919.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AQ4037] gi|28809657|dbj|BAC62632.1| cold shock transcriptional regulator CspA [Vibrio parahaemolyticus RIMD 2210633] gi|149747683|gb|EDM58593.1| cold-shock' DNA-binding domain, putative [Vibrio parahaemolyticus AQ3810] gi|308086443|gb|EFO36138.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus Peru-466] gi|308091849|gb|EFO41544.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AN-5034] gi|308107098|gb|EFO44638.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AQ4037] gi|308112226|gb|EFO49766.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus K5030] gi|328471023|gb|EGF41934.1| cold shock transcriptional regulator CspA [Vibrio parahaemolyticus 10329] Length = 70 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF++ + G DVF+H +A+ + G LTEGQ V+++ Q G Sbjct: 6 TGSVKWFNETKGFGFLSQD---NGGQDVFVHFNAIVADGFKTLTEGQKVSFNVEQG-KKG 61 Query: 64 KYSAENLKL 72 + E L Sbjct: 62 PQATEVTPL 70 >gi|294648554|ref|ZP_06726022.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194] gi|292825556|gb|EFF84291.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194] Length = 71 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E SG DVF H S +AS+G L EGQ V + Q Sbjct: 8 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEIASSGFKTLMEGQQVEFSVAQGQKG- 62 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 63 -PNAVNIVAI 71 >gi|270007992|gb|EFA04440.1| hypothetical protein TcasGA2_TC014742 [Tribolium castaneum] Length = 192 Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG KW+N KG+GFITP+ + G DVF+H+S + +G +L + + V ++ +D Sbjct: 36 LRRGKCKWFNVAKGWGFITPD---DGGQDVFVHQSVIQMSGFRSLGDDEEVEFECQVSDK 92 Query: 62 N 62 Sbjct: 93 G 93 >gi|149374445|ref|ZP_01892219.1| Cold shock protein [Marinobacter algicola DG893] gi|149361148|gb|EDM49598.1| Cold shock protein [Marinobacter algicola DG893] Length = 193 Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KG+GFI + SGD+VF+H A+ G L +GQLV + V+ D Sbjct: 127 EEGTVKWFNVKKGFGFIVRD----SGDEVFVHFRAIRGRGRRVLRQGQLVRFSVVEADKG 182 Query: 63 GKYSAENLKLVPK 75 A+N+ ++ Sbjct: 183 --LQADNVSILSD 193 >gi|326560305|gb|EGE10693.1| cold-shock DNA-binding protein family [Moraxella catarrhalis 7169] gi|326562975|gb|EGE13254.1| cold-shock DNA-binding protein family [Moraxella catarrhalis 46P47B1] gi|326563611|gb|EGE13863.1| cold-shock DNA-binding protein family [Moraxella catarrhalis 103P14B1] gi|326565318|gb|EGE15498.1| cold-shock DNA-binding protein family [Moraxella catarrhalis 12P80B1] gi|326566377|gb|EGE16527.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC1] gi|326570186|gb|EGE20231.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC8] gi|326570924|gb|EGE20948.1| cold-shock DNA-binding protein family [Moraxella catarrhalis BC7] gi|326573218|gb|EGE23186.1| cold-shock DNA-binding protein family [Moraxella catarrhalis 101P30B1] gi|326575880|gb|EGE25803.1| cold-shock DNA-binding protein family [Moraxella catarrhalis CO72] gi|326576345|gb|EGE26254.1| cold-shock DNA-binding protein family [Moraxella catarrhalis O35E] Length = 68 Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G +KW+N KG+GFI E G+DVF+H A+ G +L EGQ V + V Sbjct: 4 EQGVVKWFNDAKGFGFIQRET----GEDVFVHFRAIQGEGYRSLKEGQAVEF-VVTTGDK 58 Query: 63 GKYSAENLKL 72 G + E KL Sbjct: 59 GLQAEEVTKL 68 >gi|226953337|ref|ZP_03823801.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|294651960|ref|ZP_06729249.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194] gi|226835963|gb|EEH68346.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|292822192|gb|EFF81106.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194] Length = 69 Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 8/71 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI +SG DVF H S +A++G L EGQ V++ Q G Sbjct: 6 TGTVKWFNETKGFGFIQQ----QSGPDVFAHFSEIANSGFKTLYEGQQVSFSVAQ----G 57 Query: 64 KYSAENLKLVP 74 + + +VP Sbjct: 58 QKGPNAVNIVP 68 >gi|307825191|ref|ZP_07655411.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307733647|gb|EFO04504.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 70 Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + G++KW+N KG+GFI E G DVF+H S ++S G +LT+GQ V ++ Q Sbjct: 6 NTGTVKWFNASKGFGFIEQEK----GPDVFVHYSNISSTGFKSLTDGQKVKFNVSQGKKG 61 Query: 63 GKYSAENLKLV 73 AE+L ++ Sbjct: 62 --PQAEDLIVI 70 >gi|304320970|ref|YP_003854613.1| Cold shock protein [Parvularcula bermudensis HTCC2503] gi|303299872|gb|ADM09471.1| Cold shock protein [Parvularcula bermudensis HTCC2503] Length = 69 Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI PE + DVF+H +A+ +GL L EG VT++ ++ Sbjct: 1 MATGTVKFFNTQKGFGFIQPE---DGSSDVFVHATALERSGLAPLNEGDKVTFETARDKR 57 Query: 62 NGKYSAENLKL 72 +GK + +++ Sbjct: 58 SGKMAVSTIQM 68 >gi|119470168|ref|ZP_01612934.1| nucleic acid-binding domain, cold-shock RNA chaperone [Alteromonadales bacterium TW-7] gi|119446589|gb|EAW27863.1| nucleic acid-binding domain, cold-shock RNA chaperone [Alteromonadales bacterium TW-7] Length = 72 Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI +G D+F H S + G L GQ VT++ Q Sbjct: 1 MACGKVKWFNNAKGFGFIVEDGCEN---DIFAHYSTIVMDGYKTLKAGQDVTFELEQGPK 57 Query: 62 NGKYSAENLKL 72 A+N+ L Sbjct: 58 G--LHAKNIAL 66 >gi|53804193|ref|YP_113979.1| cold shock protein [Methylococcus capsulatus str. Bath] gi|53757954|gb|AAU92245.1| cold shock protein [Methylococcus capsulatus str. Bath] Length = 69 Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V +G++KW+N KGYGFI E SG D+F+H ++ G L EGQ V++ VQ Sbjct: 4 VQQGTVKWFNETKGYGFIQRE----SGADLFVHFRSILGEGFKTLKEGQRVSFVEVQGAK 59 Query: 62 NGKYSAENLKLV 73 A+ + ++ Sbjct: 60 G--PQADQVSVI 69 >gi|253581856|ref|ZP_04859080.1| cold shock protein CspC [Fusobacterium varium ATCC 27725] gi|251836205|gb|EES64742.1| cold shock protein CspC [Fusobacterium varium ATCC 27725] Length = 65 Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFIT E G D+F H S + G L E + VTYD ++ Sbjct: 2 KGTVKWFNQEKGFGFIT----GEDGKDIFAHFSQIQKDGFKTLNENEEVTYDVIEGQKG- 56 Query: 64 KYSAENLK 71 A N+K Sbjct: 57 -PQAANIK 63 >gi|226954178|ref|ZP_03824642.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|294650208|ref|ZP_06727582.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC 19194] gi|226835087|gb|EEH67470.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|292823914|gb|EFF82743.1| cold shock-like family protein [Acinetobacter haemolyticus ATCC 19194] Length = 70 Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI +SG DVF H S + S G L EGQ VT+ + G Sbjct: 6 TGTVKWFNETKGFGFI----HADSGQDVFAHFSEIQSTGFKVLHEGQRVTFTIT-DGKKG 60 Query: 64 KYSAENLKLVP 74 A + +VP Sbjct: 61 PQ-ATGITVVP 70 >gi|110598159|ref|ZP_01386437.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] gi|110340291|gb|EAT58788.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] Length = 69 Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V + Q Sbjct: 6 EGTVKWFNEEKGYGFIEQ----KGGKDVFVHHSAINGTGRKTLVEGQKVLMEVTQGAKG- 60 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 61 -LQAENVTPL 69 >gi|117924550|ref|YP_865167.1| cold-shock DNA-binding protein family protein [Magnetococcus sp. MC-1] gi|117608306|gb|ABK43761.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1] Length = 71 Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N DKG+GFI P+ DVF H S + + +G +L EGQ V + D Sbjct: 6 TGTVKWFNNDKGFGFIAPD---NGSKDVFAHFSEISSGSGFKSLEEGQKVEFSVEPGDKG 62 Query: 63 GK 64 K Sbjct: 63 PK 64 >gi|224012555|ref|XP_002294930.1| cold-shock DNA-binding domain-containing protein [Thalassiosira pseudonana CCMP1335] gi|220969369|gb|EED87710.1| cold-shock DNA-binding domain-containing protein [Thalassiosira pseudonana CCMP1335] Length = 102 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 1 MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M R G++KW++ KGYGFITP +D+F+H+S++ G L EG V ++ Sbjct: 1 MAERVLGNVKWFSNKKGYGFITPAEGATVAEDIFVHQSSIHCDGYRTLDEGWEVEFEIGH 60 Query: 59 NDANGKYSAENLK 71 +D +GK A ++ Sbjct: 61 DD-DGKVKAVSVT 72 >gi|332559893|ref|ZP_08414215.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N] gi|332277605|gb|EGJ22920.1| cold-shock DNA-binding protein [Rhodobacter sphaeroides WS8N] Length = 68 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+++W+N KG+GF+ P DVF+H +A+ AG+ L +GQ +TYD + D Sbjct: 1 MANGTVQWFNATKGFGFVAP---AHGSKDVFVHVTALERAGIHQLNDGQALTYDM-ETDR 56 Query: 62 NGKYSAENLKL 72 NG+ SA NL L Sbjct: 57 NGRESATNLVL 67 >gi|297735007|emb|CBI17369.3| unnamed protein product [Vitis vinifera] Length = 208 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G ++W++ KG+GFITP E G+D+F+H+S++ S G +L EG+ V + V + +G Sbjct: 7 TGVVRWFSDQKGFGFITP---NEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGE-DG 62 Query: 64 KYSAENLK 71 + A ++ Sbjct: 63 RTKAVDVT 70 >gi|257453238|ref|ZP_05618537.1| cold-shock domain-contain protein [Fusobacterium sp. 3_1_5R] gi|257467171|ref|ZP_05631482.1| cold-shock domain-contain protein [Fusobacterium gonidiaformans ATCC 25563] gi|315918302|ref|ZP_07914542.1| cold-shock protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059772|ref|ZP_07924257.1| cold-shock protein [Fusobacterium sp. 3_1_5R] gi|313685448|gb|EFS22283.1| cold-shock protein [Fusobacterium sp. 3_1_5R] gi|313692177|gb|EFS29012.1| cold-shock protein [Fusobacterium gonidiaformans ATCC 25563] Length = 67 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFIT E + D F+H S +A G +L EGQ VT++ + Sbjct: 1 MLKGTVKWFNNEKGFGFITGEDTV----DYFVHFSGIAGEGFKSLEEGQAVTFEVSEG-K 55 Query: 62 NGKYSAENLK 71 G + E K Sbjct: 56 KGPMAVEVTK 65 >gi|262368483|ref|ZP_06061812.1| cold-shock DNA-binding domain-containing protein [Acinetobacter johnsonii SH046] gi|262316161|gb|EEY97199.1| cold-shock DNA-binding domain-containing protein [Acinetobacter johnsonii SH046] Length = 69 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI+ +++G+DVF H S + S G L EGQ V + V Sbjct: 4 ITTGTVKWFNETKGFGFIS----SDTGEDVFAHFSEIQSNGFKVLNEGQRVQFTIVAGKK 59 Query: 62 NGKYSAENL 70 + S+ + Sbjct: 60 GPQASSITV 68 >gi|262371507|ref|ZP_06064821.1| cold shock protein [Acinetobacter johnsonii SH046] gi|294648334|ref|ZP_06725843.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194] gi|262313558|gb|EEY94611.1| cold shock protein [Acinetobacter johnsonii SH046] gi|292825776|gb|EFF84470.1| cold shock protein CspE [Acinetobacter haemolyticus ATCC 19194] Length = 71 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E SG DVF H S +AS+G L EGQ+V + Q Sbjct: 8 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEIASSGFKTLMEGQMVEFSVAQGQKG- 62 Query: 64 KYSAENL 70 +A N+ Sbjct: 63 -PNAVNI 68 >gi|262279162|ref|ZP_06056947.1| predicted protein [Acinetobacter calcoaceticus RUH2202] gi|262259513|gb|EEY78246.1| predicted protein [Acinetobacter calcoaceticus RUH2202] Length = 69 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF H +AS+G L EGQ VT++ Q Sbjct: 6 NGTVKWFNETKGFGFIQQE----SGPDVFAHFKEIASSGFKTLYEGQKVTFNIAQGQKG- 60 Query: 64 KYSAENL 70 SA N+ Sbjct: 61 -PSAVNI 66 >gi|297580126|ref|ZP_06942053.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297535772|gb|EFH74606.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 70 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS+KW+N KG+GF++ + GDDVF+H +++ S G L EGQ V+Y V+ G Sbjct: 7 GSVKWFNETKGFGFLSQD---NGGDDVFVHFNSIVSTGFKTLAEGQKVSY-LVEKGKKGL 62 Query: 65 YSAENLKL 72 +AE L Sbjct: 63 QAAEVTVL 70 >gi|87118640|ref|ZP_01074539.1| probable cold-shock protein [Marinomonas sp. MED121] gi|86166274|gb|EAQ67540.1| probable cold-shock protein [Marinomonas sp. MED121] Length = 158 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GF+T + +G+DVF+H A+ G L EGQ V + + + Sbjct: 93 GTVKWFNSSKGFGFLTRD----NGEDVFVHYRAIRGRGRRFLIEGQQVRFYVTEGEKG-- 146 Query: 65 YSAENLKLV 73 AEN+ ++ Sbjct: 147 KQAENVSIL 155 >gi|262369668|ref|ZP_06062996.1| cold-shock domain-containing protein [Acinetobacter johnsonii SH046] gi|262315736|gb|EEY96775.1| cold-shock domain-containing protein [Acinetobacter johnsonii SH046] Length = 70 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G +KW+N KG+GFI GDDVF+H A+ G +L +GQ V + V+ Sbjct: 4 REQGVVKWFNDTKGFGFIQ----RNGGDDVFVHFRAIQGDGHRSLRDGQRVEFSVVKGQK 59 Query: 62 NGKYSAENLKLV 73 + AE ++ + Sbjct: 60 G--FQAEEVQPL 69 >gi|260494795|ref|ZP_05814925.1| cold shock domain-containing protein CspD [Fusobacterium sp. 3_1_33] gi|260197957|gb|EEW95474.1| cold shock domain-containing protein CspD [Fusobacterium sp. 3_1_33] Length = 71 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ + Sbjct: 7 KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVEFEITEGQKG- 61 Query: 64 KYSAENLKLVP 74 A N+ ++ Sbjct: 62 -PQASNIVIIK 71 >gi|315126911|ref|YP_004068914.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas sp. SM9913] gi|315015425|gb|ADT68763.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas sp. SM9913] Length = 67 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N KG+GFI E +G DVF+H SA+ +G L+EGQ VT+ Q Sbjct: 1 MSVTGKVKFFNEAKGFGFIEQE----NGPDVFVHFSAITGSGFRTLSEGQAVTFSIKQGQ 56 Query: 61 ANGKYSAENLKL 72 + AEN+++ Sbjct: 57 KGPE--AENVEV 66 >gi|126740669|ref|ZP_01756355.1| cold shock family protein [Roseobacter sp. SK209-2-6] gi|126718184|gb|EBA14900.1| cold shock family protein [Roseobacter sp. SK209-2-6] Length = 68 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ E G DVF+H S V +GL L + V Y+ + Sbjct: 1 MPSGTVKWFNTTKGFGFIEPD---EGGKDVFVHISQVERSGLSGLADNMKVDYELTEG-R 56 Query: 62 NGKYSAENLK 71 +G+ A LK Sbjct: 57 DGRKMAGELK 66 >gi|119946327|ref|YP_944007.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119864931|gb|ABM04408.1| cold-shock DNA-binding protein family [Psychromonas ingrahamii 37] Length = 70 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GF+T + G DVF H A+AS G L EGQ V+++ Q Sbjct: 6 TGLVKWFDEAKGFGFLTQD---NGGADVFCHFRAIASEGFKTLAEGQKVSFEVEQGQKG- 61 Query: 64 KYSAENL 70 A N+ Sbjct: 62 -LQAGNV 67 >gi|150378053|ref|YP_001314648.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150032600|gb|ABR64715.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] Length = 67 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++ DKG+GFITP+ G DVF+H SA+ AG +L +GQ V+Y+ Q+ Sbjct: 1 MATGTVKFFAQDKGFGFITPDS---GGPDVFVHISALGFAG--SLQDGQKVSYELGQDRK 55 Query: 62 NGKYSAENLKLV 73 GK AEN+ + Sbjct: 56 TGKSKAENVSAL 67 >gi|315633923|ref|ZP_07889212.1| CspA family cold shock transcriptional regulator [Aggregatibacter segnis ATCC 33393] gi|315477173|gb|EFU67916.1| CspA family cold shock transcriptional regulator [Aggregatibacter segnis ATCC 33393] Length = 69 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI PE + DVF+H S + L EG V ++ VQ+ G Sbjct: 5 NGTVKWFNSTKGFGFIAPE---DGSKDVFVHFSGIVGNNFRTLNEGDRVAFN-VQDSQRG 60 Query: 64 KYSAENLKLV 73 A +++++ Sbjct: 61 PT-AVDVEVI 69 >gi|302392304|ref|YP_003828124.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM 5501] gi|302204381|gb|ADL13059.1| cold-shock DNA-binding domain protein [Acetohalobium arabaticum DSM 5501] Length = 66 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ KGYGFI G DDVF+H SA+ G L EGQ V + V+ D Sbjct: 1 MKTGTVKWFDGKKGYGFIEVPGE----DDVFVHFSAIEEEGFKTLEEGQEVQFKVVEGD- 55 Query: 62 NGKYSAENLKL 72 G + E K+ Sbjct: 56 KGPQAEEVTKI 66 >gi|163801254|ref|ZP_02195153.1| cold shock transcriptional regulator CspA [Vibrio sp. AND4] gi|159174743|gb|EDP59543.1| cold shock transcriptional regulator CspA [Vibrio sp. AND4] Length = 69 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF+T + + G DVF+H +A+ S G L EGQ V++ V+ G Sbjct: 5 TGSVKWFNESKGFGFLTQD---DGGKDVFVHFNAIVSDGFKTLAEGQKVSFK-VEEGQKG 60 Query: 64 KYSAENLKL 72 + E L Sbjct: 61 PQATEVTPL 69 >gi|119476408|ref|ZP_01616759.1| cold-shock domain family protein [marine gamma proteobacterium HTCC2143] gi|119450272|gb|EAW31507.1| cold-shock domain family protein [marine gamma proteobacterium HTCC2143] Length = 69 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G+IKW+N KG+GFI G D+F+H ++ G L EGQ V + V+ Sbjct: 6 TGTIKWFNNAKGFGFIAQ----TEGADIFVHFRSIRGEGYKTLDEGQEVEFTVVEGAKG- 60 Query: 64 KYSAENL 70 AE++ Sbjct: 61 -LQAEDV 66 >gi|90021554|ref|YP_527381.1| cold-shock DNA-binding protein family protein [Saccharophagus degradans 2-40] gi|89951154|gb|ABD81169.1| cold-shock DNA-binding protein family [Saccharophagus degradans 2-40] Length = 69 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFI+ E G+D+F+H S + +G L EGQ V++ + Sbjct: 6 NGTVKWFNESKGYGFISRE----GGNDLFVHFSNITGSGFKTLKEGQSVSF--TEGMGQK 59 Query: 64 KYSAENLKLV 73 AEN++ + Sbjct: 60 GPQAENVEPL 69 >gi|77457312|ref|YP_346817.1| cold-shock DNA-binding protein family protein [Pseudomonas fluorescens Pf0-1] gi|77381315|gb|ABA72828.1| major cold shock protein [Pseudomonas fluorescens Pf0-1] Length = 69 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFI E G DVF+H A+ G +LTEGQ V Y V+ Sbjct: 4 RETGNVKWFNDAKGYGFIQRE----DGVDVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQK 59 Query: 62 NGKYSAENL 70 AE++ Sbjct: 60 G--LQAEDV 66 >gi|2493771|sp|P72188|CAPA_PSEFR RecName: Full=Cold shock protein CapA; AltName: Full=C7.0; AltName: Full=Cold acclimation protein A gi|1513079|gb|AAC45996.1| cold acclimation protein A [Pseudomonas fragi] Length = 64 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ V++ + Sbjct: 4 RQSGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIESDGFKSLKEGQTVSF-VAEKGQ 59 Query: 62 NGKYS 66 G + Sbjct: 60 KGMQA 64 >gi|325121558|gb|ADY81081.1| probable cold-shock protein [Acinetobacter calcoaceticus PHEA-2] Length = 71 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI + G D+F H + + + G L EGQ V + VQ Sbjct: 5 TGTVKWFNETKGFGFIA----ADEGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQGKKG- 59 Query: 64 KYSAENLKLVPKS 76 A N+ ++ S Sbjct: 60 -PQASNIVILQNS 71 >gi|302875711|ref|YP_003844344.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|307689143|ref|ZP_07631589.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|302578568|gb|ADL52580.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans 743B] Length = 68 Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + G++KW+N +KG+GFI EG +DVF+H SA+ S NL EG+ V ++ Q Sbjct: 1 MKTGTVKWFNQEKGFGFIEVEGE----NDVFVHFSAIQSDSPRKNLEEGEKVEFEVEQG- 55 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 56 PKGLQAANVVKL 67 >gi|117926184|ref|YP_866801.1| cold-shock DNA-binding protein family protein [Magnetococcus sp. MC-1] gi|117609940|gb|ABK45395.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1] Length = 71 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N DKG+GFI P+ DVF H S + + +G +L EGQ V ++ D Sbjct: 6 TGTVKWFNNDKGFGFIAPD---NGSKDVFAHFSEISSGSGFKSLEEGQKVEFNVEPGDKG 62 Query: 63 GK 64 K Sbjct: 63 PK 64 >gi|294139961|ref|YP_003555939.1| cold shock-like protein cspE [Shewanella violacea DSS12] gi|293326430|dbj|BAJ01161.1| cold shock-like protein cspE [Shewanella violacea DSS12] Length = 68 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + +G++KW+N DKG+GFITPE + D+F+H S + S G L +GQ V Y+ Q Sbjct: 1 MSKGTVKWFNADKGFGFITPE---DGSKDLFVHHSEIQSGGDYATLNDGQAVEYEVGQGQ 57 Query: 61 ANG 63 Sbjct: 58 KGP 60 >gi|284046448|ref|YP_003396788.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] gi|283950669|gb|ADB53413.1| cold-shock DNA-binding domain protein [Conexibacter woesei DSM 14684] Length = 67 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ DKG+GFITP+ + D+F+H + + S G +L EG V+YD Sbjct: 1 MATGTVKWFSDDKGFGFITPDDQS---KDLFVHHTGIISDGYRSLPEGAKVSYDSEPGPK 57 Query: 62 NGKYSAENLK 71 K A N++ Sbjct: 58 GPK--AVNVQ 65 >gi|326796223|ref|YP_004314043.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] gi|326546987|gb|ADZ92207.1| cold-shock DNA-binding domain protein [Marinomonas mediterranea MMB-1] Length = 69 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT E G DVF+H SA+ +G L EGQ V ++ + G Sbjct: 6 TGTVKFFNETKGFGFITQEQ----GPDVFVHFSAINVSGFKTLAEGQKVQFEVA-DGKKG 60 Query: 64 KYSAENLKLV 73 A+N+ + Sbjct: 61 PE-AQNVTPL 69 >gi|163802491|ref|ZP_02196384.1| bifunctional GMP synthase/glutamine amidotransferase protein [Vibrio sp. AND4] gi|159173792|gb|EDP58607.1| bifunctional GMP synthase/glutamine amidotransferase protein [Vibrio sp. AND4] Length = 70 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF+T + G DVF+H A+ S G L EGQ V++ Q G Sbjct: 6 TGSVKWFNESKGFGFLTQD---NGGADVFVHFQAIVSEGFKTLVEGQKVSFSVEQG-PKG 61 Query: 64 KYSAENL 70 +A + Sbjct: 62 LQAANVV 68 >gi|237736040|ref|ZP_04566521.1| cold-shock protein [Fusobacterium mortiferum ATCC 9817] gi|229421854|gb|EEO36901.1| cold-shock protein [Fusobacterium mortiferum ATCC 9817] Length = 71 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GF+T +E G D F+H + + G L EGQ VT++ + Sbjct: 6 MLKGTVKWFNKEKGFGFVT----SEDGADYFVHFTGIVGEGFRTLEEGQAVTFEVTEGKK 61 Query: 62 NGKYSAENLKL 72 A ++K+ Sbjct: 62 G--PMAVDVKV 70 >gi|300309840|ref|YP_003773932.1| cold-shock transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300072625|gb|ADJ62024.1| cold-shock transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 70 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N KG+GFITP+ G DVF H + S G +L+E Q V++D Sbjct: 4 QTGVVKWFNDAKGFGFITPDA---GGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKG 60 Query: 63 GKYSAENLKLV 73 A N+K++ Sbjct: 61 --EKATNIKVI 69 >gi|258542278|ref|YP_003187711.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-01] gi|329113442|ref|ZP_08242223.1| Cold shock-like protein CspE [Acetobacter pomorum DM001] gi|256633356|dbj|BAH99331.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-01] gi|256636415|dbj|BAI02384.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-03] gi|256639468|dbj|BAI05430.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-07] gi|256642524|dbj|BAI08479.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-22] gi|256645579|dbj|BAI11527.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-26] gi|256648632|dbj|BAI14573.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-32] gi|256651685|dbj|BAI17619.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654676|dbj|BAI20603.1| transcriptional regulator cold shock protein [Acetobacter pasteurianus IFO 3283-12] gi|326697267|gb|EGE48927.1| Cold shock-like protein CspE [Acetobacter pomorum DM001] Length = 225 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KWYN KG+GFITPE G D+F+H SA+ +GL L EGQ V VQ G Sbjct: 161 RGTVKWYNSVKGFGFITPES---GGKDIFVHASALERSGLSALNEGQGVNVKVVQGQ-KG 216 Query: 64 KYSAEN 69 +AE Sbjct: 217 PEAAEV 222 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ + DVFLH +A++ AG ++ G + Q G+ Sbjct: 63 TVKWFNSEKGFGFVE---LADGTGDVFLHANALSQAGHQGVSPGATLVVRIGQG-PKGRQ 118 Query: 66 SAENLKLVPKSSN 78 AE + + ++ Sbjct: 119 VAEVISVDESTAQ 131 >gi|152995290|ref|YP_001340125.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150836214|gb|ABR70190.1| putative cold-shock DNA-binding domain protein [Marinomonas sp. MWYL1] Length = 156 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GF+T E+GDDVF+H A+ G L EGQLV + + + Sbjct: 91 QGTVKWFNSSKGFGFLT----MENGDDVFVHYRAIRGRGRRFLVEGQLVRFYVTEGEKG- 145 Query: 64 KYSAENLKLV 73 AEN+ ++ Sbjct: 146 -KQAENVSII 154 >gi|19703863|ref|NP_603425.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|254304125|ref|ZP_04971483.1| cold shock protein CspC [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|256844890|ref|ZP_05550348.1| cold shock domain-containing protein CspD [Fusobacterium sp. 3_1_36A2] gi|294785827|ref|ZP_06751115.1| cold shock protein [Fusobacterium sp. 3_1_27] gi|296329383|ref|ZP_06871883.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714023|gb|AAL94724.1| Cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|148324317|gb|EDK89567.1| cold shock protein CspC [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|256718449|gb|EEU32004.1| cold shock domain-containing protein CspD [Fusobacterium sp. 3_1_36A2] gi|294487541|gb|EFG34903.1| cold shock protein [Fusobacterium sp. 3_1_27] gi|296153503|gb|EFG94321.1| cold shock protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 71 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ + Sbjct: 7 KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVEFEITEGQKG- 61 Query: 64 KYSAENLKLVP 74 A N+ ++ Sbjct: 62 -PQASNIVVIK 71 >gi|262368477|ref|ZP_06061806.1| cold shock protein [Acinetobacter johnsonii SH046] gi|262316155|gb|EEY97193.1| cold shock protein [Acinetobacter johnsonii SH046] Length = 69 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF H +AS+G L EGQ V++ Q G Sbjct: 6 TGTVKWFNETKGFGFIQQE----SGPDVFAHFREIASSGFKTLHEGQQVSFSIEQGQ-KG 60 Query: 64 KYSAENLKL 72 + + L Sbjct: 61 PNAVNIVAL 69 >gi|262374770|ref|ZP_06068038.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] gi|262310301|gb|EEY91397.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] Length = 71 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E SG DVF H S ++S+G L EGQ+V + Q Sbjct: 8 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEISSSGFKTLMEGQMVEFSVAQGQKG- 62 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 63 -PNAVNIVAI 71 >gi|302385946|ref|YP_003821768.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] gi|302196574|gb|ADL04145.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] Length = 66 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI E G+D+F+H S +A G +L +GQ V ++ N A Sbjct: 1 MKKGTVKWFNAQKGFGFIC----DEEGNDIFVHFSGLAMEGFKSLEDGQSVIFE-TTNGA 55 Query: 62 NGKYSAENLKL 72 G A N+ + Sbjct: 56 RG-LQAVNVHI 65 >gi|262373766|ref|ZP_06067044.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] gi|262311519|gb|EEY92605.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] Length = 71 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E SG DVF H S ++++G L EGQ+V + Q Sbjct: 8 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEISNSGFKTLFEGQMVEFSIAQGQKG- 62 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 63 -PNAVNITAL 71 >gi|118591841|ref|ZP_01549236.1| cold shock protein [Stappia aggregata IAM 12614] gi|118435484|gb|EAV42130.1| cold shock protein [Stappia aggregata IAM 12614] Length = 286 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++K++ DKG+GFITP+ E DVF+H SAV +G L GQ V+++ + Sbjct: 202 RQSGTVKFFKNDKGFGFITPD---EGDADVFVHISAVERSGFAGLDSGQRVSFETEPDRR 258 Query: 62 NGKYSAENLKLVPK 75 A NL+ + Sbjct: 259 GKGPKAVNLQALED 272 >gi|117926229|ref|YP_866846.1| cold-shock DNA-binding protein family protein [Magnetococcus sp. MC-1] gi|117609985|gb|ABK45440.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1] Length = 69 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++K++N KGYGFI+ E G DVF+H SA+ +G LT+GQ V +D VQ Sbjct: 4 REVGTVKFFNEQKGYGFISRE----DGSDVFVHFSAIQGSGFRTLTQGQKVEFDTVQGKK 59 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 60 G--LQAENVT 67 >gi|332716945|ref|YP_004444411.1| Cold shock protein cspA [Agrobacterium sp. H13-3] gi|325063630|gb|ADY67320.1| Cold shock protein cspA [Agrobacterium sp. H13-3] Length = 67 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++ DKG+GFITP+ G DVF+H SAV G +L +GQ V+YD Q+ Sbjct: 1 MATGTVKFFAQDKGFGFITPD---NGGPDVFVHISAVGFGG--SLQDGQKVSYDVGQDRK 55 Query: 62 NGKYSAENLKLV 73 GK AEN+ L+ Sbjct: 56 TGKSKAENVSLI 67 >gi|91083993|ref|XP_975245.1| PREDICTED: similar to AGAP006591-PA [Tribolium castaneum] Length = 195 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG KW+N KG+GFITP+ + G DVF+H+S + +G +L + + V ++ +D Sbjct: 39 LRRGKCKWFNVAKGWGFITPD---DGGQDVFVHQSVIQMSGFRSLGDDEEVEFECQVSDK 95 Query: 62 N 62 Sbjct: 96 G 96 >gi|15233440|ref|NP_195326.1| CSDP1 (cold shock domain protein 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding [Arabidopsis thaliana] gi|3036806|emb|CAA18496.1| glycine-rich protein [Arabidopsis thaliana] gi|7270554|emb|CAB81511.1| glycine-rich protein [Arabidopsis thaliana] gi|110741941|dbj|BAE98911.1| glycine-rich protein [Arabidopsis thaliana] gi|332661203|gb|AEE86603.1| cellular nucleic acid-binding protein [Arabidopsis thaliana] Length = 299 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + W+N KGYGFITP+ + ++F+H+S++ S G +LT G V + Q ++G Sbjct: 12 TGKVNWFNASKGYGFITPD---DGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQG-SDG 67 Query: 64 KYSAENLK 71 K A N+ Sbjct: 68 KTKAVNVT 75 >gi|262198097|ref|YP_003269306.1| cold-shock DNA-binding domain protein [Haliangium ochraceum DSM 14365] gi|262081444|gb|ACY17413.1| cold-shock DNA-binding domain protein [Haliangium ochraceum DSM 14365] Length = 94 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 5/75 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI E G DVF+H S + + G LTEG++V Y+ Q Sbjct: 1 MPTGAVKWFNNVKGYGFI----LREDGQDVFVHWSNILADGYRLLTEGEIVEYEL-QEGP 55 Query: 62 NGKYSAENLKLVPKS 76 G ++A+ P S Sbjct: 56 KGLFAAQVKSRDPSS 70 >gi|16262844|ref|NP_435637.1| CspA6 cold shock protein transcriptional regulator [Sinorhizobium meliloti 1021] gi|307322440|ref|ZP_07601795.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|307322706|ref|ZP_07602031.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|14523481|gb|AAK65049.1| CspA6 cold shock protein [Sinorhizobium meliloti 1021] gi|306891645|gb|EFN22506.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306891926|gb|EFN22757.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] Length = 67 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++ DKG+GFITP+ G DVF+H SA+ G +L +GQ V+Y+ Q+ Sbjct: 1 MATGTVKFFAQDKGFGFITPD---NGGPDVFVHISALGFGG--SLQDGQKVSYELGQDRK 55 Query: 62 NGKYSAENLKLV 73 GK AEN+ ++ Sbjct: 56 TGKSKAENVSIL 67 >gi|299770790|ref|YP_003732816.1| Cold shock-like protein cspG [Acinetobacter sp. DR1] gi|298700878|gb|ADI91443.1| Cold shock-like protein cspG [Acinetobacter sp. DR1] Length = 69 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI + G DVF H ++S+G L EGQ V+++ Q Sbjct: 7 GTVKWFNETKGFGFIQQDA----GPDVFAHFKEISSSGFKTLYEGQRVSFNIAQGQKG-- 60 Query: 65 YSAENLKL 72 SA N+ + Sbjct: 61 PSAINIVV 68 >gi|255318974|ref|ZP_05360199.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] gi|262378290|ref|ZP_06071447.1| cold shock domain-containing protein CspD [Acinetobacter radioresistens SH164] gi|255303991|gb|EET83183.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] gi|262299575|gb|EEY87487.1| cold shock domain-containing protein CspD [Acinetobacter radioresistens SH164] Length = 69 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E SG DVF H S + + G L EGQ V + V + G Sbjct: 6 KGTVKWFNETKGFGFIQQE----SGPDVFAHYSEITNQGFKTLYEGQQVQFTVV-DGKKG 60 Query: 64 KYSAENLKLV 73 A N+ LV Sbjct: 61 PQ-ASNITLV 69 >gi|119358122|ref|YP_912766.1| cold-shock DNA-binding protein family protein [Chlorobium phaeobacteroides DSM 266] gi|119355471|gb|ABL66342.1| cold-shock DNA-binding protein family [Chlorobium phaeobacteroides DSM 266] Length = 70 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KGYGFI + G DVF+H SA+ +G +LTEGQ V + VQ Sbjct: 6 EGTVKWFNEEKGYGFIAQ----KEGKDVFVHHSAIKGSGRKSLTEGQKVLMEVVQGAKG- 60 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 61 -LQAENVTPL 69 >gi|284029203|ref|YP_003379134.1| cold-shock DNA-binding domain-containing protein [Kribbella flavida DSM 17836] gi|283808496|gb|ADB30335.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM 17836] Length = 66 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 5/65 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG++KW+N DKGYGF+ EG DDVF+H S + S G L +GQ V ++ V + Sbjct: 1 MVRGTVKWFNADKGYGFLAVEGQ----DDVFVHWSKIVSDGYKTLEDGQQVEFEVV-DGP 55 Query: 62 NGKYS 66 G+ + Sbjct: 56 KGREA 60 >gi|52425199|ref|YP_088336.1| CspC protein [Mannheimia succiniciproducens MBEL55E] gi|52307251|gb|AAU37751.1| CspC protein [Mannheimia succiniciproducens MBEL55E] Length = 70 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N DKG+GFITP + D+F+H S++ +L EG V Y+ V+N G Sbjct: 5 NGLVKWFNSDKGFGFITP---ADGSKDLFVHFSSILGNNYRSLNEGDRVEYN-VENTQRG 60 Query: 64 KYSAENLKLVP 74 +A + ++ Sbjct: 61 P-AAVEVAVIK 70 >gi|85709645|ref|ZP_01040710.1| cold shock protein [Erythrobacter sp. NAP1] gi|85688355|gb|EAQ28359.1| cold shock protein [Erythrobacter sp. NAP1] Length = 262 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFI E G+DVF+H SAV AGL L EGQ + ++ V D G Sbjct: 108 KGTVKFFNGQKGFGFIQQES---GGEDVFVHISAVERAGLEGLAEGQELEFNLV--DRGG 162 Query: 64 KYSAENLKLV 73 K SA++L++V Sbjct: 163 KVSAQDLQVV 172 Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GF+ + + D F+H SAV +GL + EG+ +D + D G Sbjct: 195 TGTVKFFNSMKGFGFLVRD---DGQPDAFVHISAVERSGLSAINEGERFEFDL-EVDRRG 250 Query: 64 KYSAENLKLV 73 KYSA NL V Sbjct: 251 KYSAVNLVPV 260 >gi|330983366|gb|EGH81469.1| cold shock domain family protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 55 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ Sbjct: 4 RQSGTVKWFNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTF 52 >gi|254227848|ref|ZP_04921279.1| conserved domain protein [Vibrio sp. Ex25] gi|262395888|ref|YP_003287741.1| cold shock protein CspA [Vibrio sp. Ex25] gi|151939890|gb|EDN58717.1| conserved domain protein [Vibrio sp. Ex25] gi|262339482|gb|ACY53276.1| cold shock protein CspA [Vibrio sp. Ex25] Length = 69 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GF++ + G DVF+H +A+ S G LTEGQ V+++ Q G Sbjct: 5 NGSVKWFNETKGFGFLSQD---NGGQDVFVHFNAIVSDGFKTLTEGQKVSFNVEQG-KKG 60 Query: 64 KYSAENLKL 72 + E L Sbjct: 61 PQATEVTPL 69 >gi|307721642|ref|YP_003892782.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica DSM 16294] gi|306979735|gb|ADN09770.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica DSM 16294] Length = 72 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQN 59 + G++KW+N DKG+GFI E + G DVF+H + G +L EGQ VT++ Q Sbjct: 4 LQNGTVKWFNSDKGFGFIEVE---DGGKDVFVHYRQINDNGHSRVSLDEGQKVTFEIGQG 60 Query: 60 DANGKYSAENLK 71 D AEN+ Sbjct: 61 DKG--PQAENVT 70 >gi|17547875|ref|NP_521277.1| cold shock-like transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430181|emb|CAD16944.1| probable cold shock-like cspc transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 67 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H S + +G L EG+ V Y Sbjct: 1 METGTVKWFNESKGFGFITPDA---GGNDLFAHFSEIQGSGFKTLQEGEKVRY-VAGVGQ 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPAA 61 >gi|254196032|ref|ZP_04902457.1| cold-shock domain family protein [Burkholderia pseudomallei S13] gi|169652776|gb|EDS85469.1| cold-shock domain family protein [Burkholderia pseudomallei S13] Length = 57 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V+++ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMEGFKTLKENQRVSFEVKTGPK 57 >gi|262279640|ref|ZP_06057425.1| cold-shock DNA-binding domain-containing protein [Acinetobacter calcoaceticus RUH2202] gi|262259991|gb|EEY78724.1| cold-shock DNA-binding domain-containing protein [Acinetobacter calcoaceticus RUH2202] Length = 71 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI T+ G D+F H + + + G L EGQ V + VQ Sbjct: 5 TGTVKWFNETKGFGFIV----TDEGKDIFAHFTDIQTPGFKVLLEGQRVEFTVVQGKKG- 59 Query: 64 KYSAENLKLVPKS 76 A N+ +V S Sbjct: 60 -PQASNIVIVQNS 71 >gi|227832058|ref|YP_002833765.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975] gi|262184088|ref|ZP_06043509.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975] gi|227453074|gb|ACP31827.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975] Length = 67 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N +KGYGFI E + D+F+H + + G L + Q V+++ ++ Sbjct: 1 MAYGTVKFFNAEKGYGFIEQE---DGSGDIFVHYTEIQGTGFRTLEDNQRVSFEIGEDAK 57 Query: 62 NGKYSAENLKLV 73 A N+++V Sbjct: 58 G--QQATNVEVV 67 >gi|15604514|ref|NP_221032.1| cold shock-like protein (cspA) [Rickettsia prowazekii str. Madrid E] gi|6225211|sp|Q9ZCP9|CSPA_RICPR RecName: Full=Cold shock-like protein CspA gi|3861208|emb|CAA15108.1| COLD SHOCK-LIKE PROTEIN (cspA) [Rickettsia prowazekii] gi|292572298|gb|ADE30213.1| Cold shock-like protein [Rickettsia prowazekii Rp22] Length = 70 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI + G DVF+H+SA+ +AGL +L EGQ V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQD---NGGKDVFVHKSAIDAAGLHSLEEGQEVIFDIEE--KQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAVNLRV 69 >gi|187928399|ref|YP_001898886.1| cold-shock DNA-binding domain-containing protein [Ralstonia pickettii 12J] gi|241662975|ref|YP_002981335.1| cold-shock DNA-binding domain-containing protein [Ralstonia pickettii 12D] gi|309782106|ref|ZP_07676836.1| cold-shock DNA-binding domain protein [Ralstonia sp. 5_7_47FAA] gi|187725289|gb|ACD26454.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|240865002|gb|ACS62663.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] gi|308919172|gb|EFP64839.1| cold-shock DNA-binding domain protein [Ralstonia sp. 5_7_47FAA] Length = 67 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFITP+ G+D+F H S V G +L EGQ V Y Sbjct: 1 METGTVKWFNDSKGFGFITPDA---GGNDLFAHFSEVQGNGFKSLQEGQKVRY-VAGVGQ 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPAA 61 >gi|254502619|ref|ZP_05114770.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii DFL-11] gi|222438690|gb|EEE45369.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii DFL-11] Length = 307 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +K++ DKG+GFITP+ + DVF+H SAV +GL +L GQ ++++ + Sbjct: 214 RQSGVVKFFKSDKGFGFITPD---DGETDVFVHISAVERSGLASLDSGQRISFETEPDRR 270 Query: 62 NGKYSAENLKLVPKSSN 78 A NL+++ + + Sbjct: 271 GKGPKAVNLQMLEEDGS 287 >gi|153953338|ref|YP_001394103.1| CspA [Clostridium kluyveri DSM 555] gi|219853967|ref|YP_002471089.1| hypothetical protein CKR_0624 [Clostridium kluyveri NBRC 12016] gi|146346219|gb|EDK32755.1| CspA [Clostridium kluyveri DSM 555] gi|219567691|dbj|BAH05675.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 67 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60 + G++KW+N +KG+GFI G +DVF+H +A+ S NL EGQ V +D V+ Sbjct: 1 MKTGTVKWFNSEKGFGFIEVPGE----NDVFVHFTAIQSNEARKNLEEGQKVQFD-VEEG 55 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 56 PKGLQAANVVKL 67 >gi|152997268|ref|YP_001342103.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150838192|gb|ABR72168.1| putative cold-shock DNA-binding domain protein [Marinomonas sp. MWYL1] Length = 87 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H GS+KW+N KGYGFI E E D+F+H SA+ G L GQ VT++ V+ Sbjct: 1 MHHGSVKWFNNAKGYGFIVSEDFNE---DLFIHYSAINIEGYKTLKAGQAVTFN-VEPGE 56 Query: 62 NGKYSAENLKLVPKSSN 78 G ++ E PK + Sbjct: 57 RGLHAIEINPTSPKETK 73 >gi|82701971|ref|YP_411537.1| cold-shock DNA-binding domain-containing protein [Nitrosospira multiformis ATCC 25196] gi|82410036|gb|ABB74145.1| cold-shock DNA-binding protein family [Nitrosospira multiformis ATCC 25196] Length = 69 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW++ DKG+GFIT + E G D+F H S++ G L E Q VT+D V Sbjct: 4 ETGIVKWFSDDKGFGFITSD---EGGKDLFAHFSSIVGEGFKTLQEAQRVTFDVVSGPKG 60 Query: 63 GKYSAENLK 71 A N++ Sbjct: 61 --LQASNIR 67 >gi|330948982|gb|EGH49242.1| cold shock protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 54 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 4/53 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V++ Sbjct: 6 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVSF 54 >gi|285017922|ref|YP_003375633.1| cold shock protein [Xanthomonas albilineans GPE PC73] gi|283473140|emb|CBA15646.1| probable cold shock protein [Xanthomonas albilineans] Length = 73 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GFI+ +G+DVF+H A+ + G +L EGQ V++ VQ Sbjct: 8 REVGLVKWFNDAKGFGFIS----RTNGEDVFVHFRAIQTQGFKSLKEGQKVSFIVVQGQK 63 Query: 62 NGKYSAENLKLV 73 A+ ++ V Sbjct: 64 G--LQADAVQPV 73 >gi|91205892|ref|YP_538247.1| cold shock-like protein [Rickettsia bellii RML369-C] gi|157826747|ref|YP_001495811.1| cold shock-like protein [Rickettsia bellii OSU 85-389] gi|91069436|gb|ABE05158.1| Cold shock-like protein [Rickettsia bellii RML369-C] gi|157802051|gb|ABV78774.1| Cold shock-like protein [Rickettsia bellii OSU 85-389] Length = 100 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP K +GFI E G DVF+HRSAV +AGL L EGQ V +D D NGK Sbjct: 37 GKVKWFNPTKNFGFIEQE---NGGKDVFVHRSAVDAAGLAGLNEGQDVIFDL--EDKNGK 91 Query: 65 YSAENLKL 72 SA NL++ Sbjct: 92 ISAVNLRI 99 >gi|307313947|ref|ZP_07593562.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|306899221|gb|EFN29859.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 67 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++ DKG+GFITP+ G DVF+H SA+ G +L +GQ V+Y+ Q+ Sbjct: 1 MATGTVKFFAQDKGFGFITPDS---GGPDVFVHISALGFGG--SLQDGQKVSYELGQDRK 55 Query: 62 NGKYSAENLKLV 73 GK AEN+ ++ Sbjct: 56 TGKSKAENVSIL 67 >gi|262372757|ref|ZP_06066036.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] gi|262312782|gb|EEY93867.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] Length = 72 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI +SG DVF H S + S G L EGQ V++ Q Sbjct: 6 TGTVKWFNETKGFGFI----HADSGQDVFAHFSEIQSNGFKVLHEGQRVSFTVAQGKKG- 60 Query: 64 KYSAENLKLVPK 75 A + +V + Sbjct: 61 -PQATGITVVAQ 71 >gi|312959376|ref|ZP_07773893.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] gi|311286093|gb|EFQ64657.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] Length = 69 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KGYGFI E G DVF+H A+ G +L EGQ V Y V + Sbjct: 4 RETGNVKWFNDAKGYGFIQRE----DGKDVFVHYRAIRGEGHRSLAEGQQVEYAVVSGEK 59 Query: 62 NGKYSAENL 70 AE++ Sbjct: 60 G--LQAEDV 66 >gi|77360127|ref|YP_339702.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|332534950|ref|ZP_08410769.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505] gi|76875038|emb|CAI86259.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Pseudoalteromonas haloplanktis TAC125] gi|332035623|gb|EGI72114.1| cold shock protein CspE [Pseudoalteromonas haloplanktis ANT/505] Length = 67 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N KG+GFI E +G DVF+H SA+ +G L+EGQ VT+ Q Sbjct: 1 MSVTGKVKFFNEAKGFGFIEQE----NGPDVFVHFSAITGSGFRTLSEGQAVTFSIKQGQ 56 Query: 61 ANGKYSAENLK 71 + AEN++ Sbjct: 57 KGPE--AENVE 65 >gi|322831731|ref|YP_004211758.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|321166932|gb|ADW72631.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] Length = 70 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ S L EGQ V + +N G Sbjct: 6 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQSNDFKTLDEGQNVEFTI-ENGQKG 61 Query: 64 KYSAENLKL 72 + + L Sbjct: 62 PSAGNVVVL 70 >gi|257453190|ref|ZP_05618489.1| cold shock protein [Fusobacterium sp. 3_1_5R] gi|257467346|ref|ZP_05631657.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563] gi|315918476|ref|ZP_07914716.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059724|ref|ZP_07924209.1| cold shock protein [Fusobacterium sp. 3_1_5R] gi|313685400|gb|EFS22235.1| cold shock protein [Fusobacterium sp. 3_1_5R] gi|313692351|gb|EFS29186.1| cold shock protein [Fusobacterium gonidiaformans ATCC 25563] Length = 66 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ VT+D + Sbjct: 2 KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVTFDITEGQKG- 56 Query: 64 KYSAENLKLVP 74 A N+ +V Sbjct: 57 -PQASNIVIVK 66 >gi|123187095|gb|ABM69256.1| CspA-like protein [Arthrobacter sp. B5] Length = 66 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI + G DVF H SA+ G L EGQ V++ + + G Sbjct: 6 EGTVKWFNEAKGFGFIAQD---NGGQDVFAHYSAIQGGGFKTLAEGQKVSF-ILGDGKKG 61 Query: 64 KYS 66 + Sbjct: 62 PQA 64 >gi|299770874|ref|YP_003732900.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1] gi|298700962|gb|ADI91527.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1] Length = 71 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI T+ G D+F H + + + G L EGQ V + VQ Sbjct: 5 TGTVKWFNETKGFGFIV----TDEGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQGKKG- 59 Query: 64 KYSAENLKLVPKS 76 A N+ ++ S Sbjct: 60 -PQASNIVILQNS 71 >gi|294676164|ref|YP_003576779.1| cold shock protein CspA [Rhodobacter capsulatus SB 1003] gi|294474984|gb|ADE84372.1| cold shock protein CspA-1 [Rhodobacter capsulatus SB 1003] Length = 68 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N +KG+GFI PEG DVF+H SAV AG+ L +G VT+ ++ Sbjct: 1 MANGTVKFFNQNKGFGFIEPEG---GAQDVFVHISAVERAGISRLVDGAKVTFQI-ESGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA +L LV Sbjct: 57 DGRKSACDLALV 68 >gi|169786884|ref|YP_001705697.1| cold shock protein [Acinetobacter baumannii SDF] gi|260558148|ref|ZP_05830357.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] gi|169150801|emb|CAP02995.1| cold shock protein [Acinetobacter baumannii] gi|260408376|gb|EEX01685.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] Length = 71 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E SG DVF H S +AS+G L EGQ V + Q Sbjct: 8 KGTVKWFNETKGFGFIQQE----SGPDVFAHFSEIASSGFKTLFEGQQVEFSVAQGQKG- 62 Query: 64 KYSAENLKLV 73 +A N+ + Sbjct: 63 -PNAVNIVAI 71 >gi|254785982|ref|YP_003073411.1| cspA cold-shock DNA-binding domain-containing protein [Teredinibacter turnerae T7901] gi|237687500|gb|ACR14764.1| cspA cold-shock DNA-binding domain protein [Teredinibacter turnerae T7901] Length = 69 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KGYGFI+ E G D+F+H S + +G L EGQ VT+ + Sbjct: 6 NGTVKWFNESKGYGFISRE----GGADLFVHFSNIIGSGFKTLKEGQAVTF--TEGTGQK 59 Query: 64 KYSAENLK 71 AEN++ Sbjct: 60 GPQAENVE 67 >gi|27377231|ref|NP_768760.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27350374|dbj|BAC47385.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 68 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KGYGFI P+ + DVF+H +V AG +L EG ++++ + + Sbjct: 1 MATGIVKWFSATKGYGFIKPD---DGEADVFVHIRSVEKAGYTSLAEGARISFER-KTGS 56 Query: 62 NGKYSAENLKL 72 +GK SA+NL++ Sbjct: 57 SGKVSADNLRI 67 >gi|257462895|ref|ZP_05627301.1| cold shock protein [Fusobacterium sp. D12] gi|317060519|ref|ZP_07925004.1| cold shock protein [Fusobacterium sp. D12] gi|313686195|gb|EFS23030.1| cold shock protein [Fusobacterium sp. D12] Length = 66 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ VT+D + Sbjct: 2 KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVTFDITEGQKG- 56 Query: 64 KYSAENLKLVP 74 A N+ +V Sbjct: 57 -PQASNIIIVK 66 >gi|26987944|ref|NP_743369.1| cold-shock domain-contain protein [Pseudomonas putida KT2440] gi|24982656|gb|AAN66833.1|AE016312_4 cold-shock domain family protein [Pseudomonas putida KT2440] Length = 91 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + + D Sbjct: 25 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRILVEGQRVEFSVMHRDKG- 79 Query: 64 KYSAENLKLV 73 AE++ V Sbjct: 80 -LQAEDVVAV 88 >gi|312961675|ref|ZP_07776173.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] gi|311283934|gb|EFQ62517.1| cold shock protein (beta-ribbon, CspA family) [Pseudomonas fluorescens WH6] Length = 91 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KGYGF+ + TE D+F H SA+ G L GQ+V+++ +Q Sbjct: 8 GKVKWFNNAKGYGFVNEDRKTE---DLFAHYSAIIMDGYKTLKAGQVVSFEIIQGPKG-- 62 Query: 65 YSAENLKLVPKS 76 A N+ V Sbjct: 63 LHAVNIDAVKAE 74 >gi|268678896|ref|YP_003303327.1| Cold-shock protein DNA-binding protein [Sulfurospirillum deleyianum DSM 6946] gi|268616927|gb|ACZ11292.1| Cold-shock protein DNA-binding protein [Sulfurospirillum deleyianum DSM 6946] Length = 71 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFI P + G DVF+H V G +L EGQ VTY+ + Sbjct: 5 EGTVKWFNNEKGFGFIQP---NDGGKDVFVHFRQVNRTGYGRVSLAEGQKVTYELGEGPK 61 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 62 G--PQAENVT 69 >gi|224084856|ref|XP_002307424.1| predicted protein [Populus trichocarpa] gi|222856873|gb|EEE94420.1| predicted protein [Populus trichocarpa] Length = 64 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 44/66 (66%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KG+GFI P+ + G+D+F+H++++ S G L++GQ V + V + +G+ Sbjct: 1 GTVKWFSAQKGFGFIAPD---DGGEDLFVHQTSIQSDGFRTLSDGQPVEFS-VDSGEDGR 56 Query: 65 YSAENL 70 A ++ Sbjct: 57 TKAVDV 62 >gi|326774945|ref|ZP_08234210.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|326655278|gb|EGE40124.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 67 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI EG G DVF H S +A+ GL L EGQ VT+D + Sbjct: 1 MASGTVKWFNAAKGFGFIEQEG---DGPDVFAHFSNIAAQGLVELIEGQKVTFDIAPSRK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|315126396|ref|YP_004068399.1| cold-shock RNA chaperone [Pseudoalteromonas sp. SM9913] gi|315014910|gb|ADT68248.1| cold-shock RNA chaperone [Pseudoalteromonas sp. SM9913] Length = 72 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI +G D+F H S + G L GQ VT++ Q Sbjct: 1 MACGKVKWFNNAKGFGFIVEDGCEN---DIFAHYSTIVMDGYKTLKAGQDVTFELQQGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|89053585|ref|YP_509036.1| cold-shock DNA-binding protein family protein [Jannaschia sp. CCS1] gi|88863134|gb|ABD54011.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1] Length = 68 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI P+ + G DVF+H SAV AG +L + +TY+ + Sbjct: 1 MPSGTVKWFNTTKGFGFIAPD---DGGKDVFVHISAVERAGWSDLPDDTKLTYEL-REGR 56 Query: 62 NGKYSAENLKLV 73 +G+ SA L V Sbjct: 57 DGRESAVELVKV 68 >gi|237745018|ref|ZP_04575499.1| cold shock protein [Fusobacterium sp. 7_1] gi|256028777|ref|ZP_05442611.1| cold shock protein [Fusobacterium sp. D11] gi|289766681|ref|ZP_06526059.1| cold shock protein [Fusobacterium sp. D11] gi|229432247|gb|EEO42459.1| cold shock protein [Fusobacterium sp. 7_1] gi|289718236|gb|EFD82248.1| cold shock protein [Fusobacterium sp. D11] Length = 66 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ + Sbjct: 2 KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVEFEITEGQKG- 56 Query: 64 KYSAENLKLVP 74 A N+ ++ Sbjct: 57 -PQASNIVIIK 66 >gi|117925208|ref|YP_865825.1| cold-shock DNA-binding protein family protein [Magnetococcus sp. MC-1] gi|117608964|gb|ABK44419.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1] Length = 70 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N DKG+GF+ + DVF+H SA++ G +L EGQ V + V + Sbjct: 4 RETGTVKWFNDDKGFGFVARD---NDKGDVFVHHSAISGTGFKSLKEGQRVEFAVV-DGR 59 Query: 62 NGKYSAENLKL 72 G + + + Sbjct: 60 KGPACEDVVAI 70 >gi|219125932|ref|XP_002183223.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405498|gb|EEC45441.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 91 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G +KW++ KG+GFI P+ + DVF+H++A+ + G +L +G+ V Y V+ D+N Sbjct: 6 QKGVVKWFDTMKGFGFIMPD---DGSTDVFVHQTAIQTEGFRSLADGEAVEY-VVEEDSN 61 Query: 63 GKYSAENLK 71 G+ A + Sbjct: 62 GRKKAVQVT 70 >gi|299134245|ref|ZP_07027438.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] gi|298590992|gb|EFI51194.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] Length = 71 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N ++GYGFI P+ + G DVF+H +AV AGL NLTEGQ +T++ + Sbjct: 1 MAMTGVVKFFNAERGYGFIKPD---DGGRDVFVHITAVEKAGLKNLTEGQHITFEVEPDK 57 Query: 61 ANGKYSAENLKL 72 A +L + Sbjct: 58 KGKGPKAVDLVV 69 >gi|296532288|ref|ZP_06895027.1| cold shock protein CspA [Roseomonas cervicalis ATCC 49957] gi|296267364|gb|EFH13250.1| cold shock protein CspA [Roseomonas cervicalis ATCC 49957] Length = 68 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KGYGFI PE + DVFLH S V +GL EG+ + YD Q Sbjct: 1 MAFGTVKWFNATKGYGFIQPE---DGSKDVFLHVSDVQRSGLREPREGERLQYDLQQGQQ 57 Query: 62 NGKYSAENLK 71 GK SA NL+ Sbjct: 58 -GKVSATNLR 66 >gi|116749630|ref|YP_846317.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698694|gb|ABK17882.1| cold-shock DNA-binding protein family [Syntrophobacter fumaroxidans MPOB] Length = 66 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI T SG DVF+H S++ G L+EGQ VT++ + A Sbjct: 1 MAEGRVKWFNDQKGYGFIE----TGSGPDVFVHHSSIEGVGFKTLSEGQEVTFEI-EKGA 55 Query: 62 NGKYSAENLKL 72 G + KL Sbjct: 56 KGPQAVRVKKL 66 >gi|83814144|ref|YP_445684.1| putative cold shock-like protein cspG [Salinibacter ruber DSM 13855] gi|83755538|gb|ABC43651.1| putative cold shock-like protein cspG [Salinibacter ruber DSM 13855] Length = 163 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 + RG+IKW++ +KG+GFI PE E G+DVFLH S + + G +L EGQ V ++ + + Sbjct: 95 MQRGTIKWFDTEKGFGFIEPE---EGGEDVFLHVSNITGSTGGDDLREGQTVAFETERTE 151 Query: 61 ANGKYSAENLKLV 73 SA N V Sbjct: 152 KG--LSALNASPV 162 >gi|311695726|gb|ADP98599.1| cold shock, CspA [marine bacterium HP15] Length = 68 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT E G DVF+H S + G L EGQ V + Q Sbjct: 5 TGNVKFFNEAKGFGFITRE----GGADVFVHYSNIQGGGFKTLAEGQEVEFTVTQGQKG- 59 Query: 64 KYSAENL 70 AEN+ Sbjct: 60 -PQAENV 65 >gi|257463996|ref|ZP_05628381.1| cold-shock domain-contain protein [Fusobacterium sp. D12] gi|317061518|ref|ZP_07926003.1| cold-shock protein [Fusobacterium sp. D12] gi|313687194|gb|EFS24029.1| cold-shock protein [Fusobacterium sp. D12] Length = 67 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GFIT E D F+H S +A G L EG+ VT++ + Sbjct: 1 MLKGTVKWFNNEKGFGFITGEDMV----DYFVHFSGIAGEGFKTLEEGEAVTFEVSEG-K 55 Query: 62 NGKYSAENLKL 72 G + E K+ Sbjct: 56 KGPMATEVTKV 66 >gi|163751971|ref|ZP_02159182.1| cold-shock DNA-binding domain family protein [Shewanella benthica KT99] gi|161328129|gb|EDP99296.1| cold-shock DNA-binding domain family protein [Shewanella benthica KT99] Length = 68 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N DKG+GFITPE + D+F+H S + G L +GQ V ++ Q Sbjct: 1 MAKGTVKWFNADKGFGFITPE---DGSKDLFVHHSEIQAGGGFATLNDGQEVEFEVGQGQ 57 Query: 61 ANG 63 Sbjct: 58 KGP 60 >gi|156394304|ref|XP_001636766.1| predicted protein [Nematostella vectensis] gi|156223872|gb|EDO44703.1| predicted protein [Nematostella vectensis] Length = 671 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFIT + + G+DVF+H+SA+ ++G +L EG+ V +D G Sbjct: 484 TGSVKWFNLIKGFGFITRD---DGGEDVFVHQSAIKASGYRSLEEGEHVQLTISNSD-KG 539 Query: 64 KYS 66 K + Sbjct: 540 KVA 542 >gi|319790475|ref|YP_004152108.1| cold-shock DNA-binding domain protein [Thermovibrio ammonificans HB-1] gi|317114977|gb|ADU97467.1| cold-shock DNA-binding domain protein [Thermovibrio ammonificans HB-1] Length = 68 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW++ KGYGFIT ++G DVF+H + + G L EG+ V+++ +++D Sbjct: 5 TGTVKWFDSKKGYGFIT----ADNGQDVFVHYTGINGEGFRTLEEGERVSFNVMESDKG 59 >gi|87201154|ref|YP_498411.1| cold-shock DNA-binding protein family protein [Novosphingobium aromaticivorans DSM 12444] gi|87136835|gb|ABD27577.1| cold-shock DNA-binding protein family [Novosphingobium aromaticivorans DSM 12444] Length = 267 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K++N KG+GFI E + G+DVF+H SAV AGL L EGQ + ++ V D G Sbjct: 113 KGVVKFFNGQKGFGFIQRE---DGGEDVFVHISAVERAGLEGLAEGQQLEFNLV--DRGG 167 Query: 64 KYSAENLKLV 73 K SA +L++V Sbjct: 168 KISAADLQVV 177 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFIT + + D F+H SAV +GL L EG + +D + D GK Sbjct: 201 GTVKFFNAMKGFGFITRD---DGQPDAFVHISAVERSGLRELNEGDKLEFDL-EVDRRGK 256 Query: 65 YSAENL 70 YSA NL Sbjct: 257 YSAVNL 262 >gi|117926359|ref|YP_866976.1| cold-shock DNA-binding protein family protein [Magnetococcus sp. MC-1] gi|117610115|gb|ABK45570.1| cold-shock DNA-binding protein family [Magnetococcus sp. MC-1] Length = 70 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI +G D F+H SA+ + G +L EGQ V + V Sbjct: 4 RETGTVKWFNDTKGFGFIERDG---GKGDAFVHHSAINATGFKSLAEGQKVEFTVVAGQK 60 Query: 62 N 62 Sbjct: 61 G 61 >gi|307823754|ref|ZP_07653982.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307735048|gb|EFO05897.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 71 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 + G +KW+N DKG+GFI +SG DVF+H + ++ G +L EGQ V + Q Sbjct: 4 MTTGIVKWFNSDKGFGFIEQ----QSGPDVFVHFQQINNSGGYKSLDEGQKVQFSVAQGQ 59 Query: 61 ANGKYSAENLKLV 73 AEN+ ++ Sbjct: 60 KG--PQAENVSVI 70 >gi|332284619|ref|YP_004416530.1| cold shock-like protein [Pusillimonas sp. T7-7] gi|330428572|gb|AEC19906.1| cold shock-like protein [Pusillimonas sp. T7-7] Length = 69 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N DKG+GFI PE G D+F H S + +G +L E Q V++ + Sbjct: 6 GIVKWFNNDKGFGFIMPES---GGKDLFAHYSEIQGSGHKSLEENQRVSFVASEGQKG-- 60 Query: 65 YSAENLKLV 73 A N+++V Sbjct: 61 PQASNIQVV 69 >gi|88857623|ref|ZP_01132266.1| Cold shock protein [Pseudoalteromonas tunicata D2] gi|88820820|gb|EAR30632.1| Cold shock protein [Pseudoalteromonas tunicata D2] Length = 69 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H A+ G L EGQ V + Q G Sbjct: 6 TGTVKWFNESKGFGFIEQE----NGPDVFAHFRAITGTGFKTLVEGQKVQFKVTQGQ-KG 60 Query: 64 KYSAENLKL 72 + E + L Sbjct: 61 PQAEEIVVL 69 >gi|257455421|ref|ZP_05620656.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] gi|257447383|gb|EEV22391.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] Length = 70 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G +KW+N KG+GFI SG+D+F+H A+ G +L +GQ V + V+ Sbjct: 4 REQGIVKWFNDSKGFGFIQ----RNSGEDIFVHFRAIQGDGYRSLQDGQKVEFIVVEGQ- 58 Query: 62 NGKYSAENLKL 72 G + E K+ Sbjct: 59 KGLQAEEVTKV 69 >gi|94495604|ref|ZP_01302184.1| cold shock protein [Sphingomonas sp. SKA58] gi|94424992|gb|EAT10013.1| cold shock protein [Sphingomonas sp. SKA58] Length = 153 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AG+ L EG + ++ + D GK Sbjct: 87 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMAALNEGDRLDFEL-EVDRRGK 142 Query: 65 YSAENLK 71 Y+A NL+ Sbjct: 143 YAAVNLQ 149 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 F+H SAV AGL L EGQ + + V D GK SA +L + Sbjct: 2 FVHISAVEQAGLTGLAEGQPLGFTLV--DRGGKVSATDLVI 40 >gi|134034058|sp|Q1RHK6|CSPA_RICBR RecName: Full=Cold shock-like protein CspA Length = 70 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+NP K +GFI E G DVF+HRSAV +AGL L EGQ V +D D NGK Sbjct: 7 GKVKWFNPTKNFGFIEQE---NGGKDVFVHRSAVDAAGLAGLNEGQDVIFDL--EDKNGK 61 Query: 65 YSAENLKL 72 SA NL++ Sbjct: 62 ISAVNLRI 69 >gi|283851981|ref|ZP_06369257.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. FW1012B] gi|283572705|gb|EFC20689.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. FW1012B] Length = 68 Score = 89.2 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW++ KGYGFI EG DDVF+H S++ G L EG++V ++ + + Sbjct: 1 MGFEGTVKWFSDKKGYGFIMREGQ----DDVFVHYSSIEGEGFRTLREGEIVNFEII-DG 55 Query: 61 ANGKYSAENLK 71 G + +K Sbjct: 56 ERGPKATNVVK 66 >gi|237739959|ref|ZP_04570440.1| cold shock protein [Fusobacterium sp. 2_1_31] gi|237741555|ref|ZP_04572036.1| cold shock protein [Fusobacterium sp. 4_1_13] gi|294782948|ref|ZP_06748274.1| hypothetical protein HMPREF0400_00932 [Fusobacterium sp. 1_1_41FAA] gi|229421976|gb|EEO37023.1| cold shock protein [Fusobacterium sp. 2_1_31] gi|229429203|gb|EEO39415.1| cold shock protein [Fusobacterium sp. 4_1_13] gi|294481589|gb|EFG29364.1| hypothetical protein HMPREF0400_00932 [Fusobacterium sp. 1_1_41FAA] Length = 66 Score = 89.2 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ + Sbjct: 2 KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVEFEITEGQKG- 56 Query: 64 KYSAENLKLVP 74 A N+ ++ Sbjct: 57 -PQASNIVVIK 66 >gi|195953301|ref|YP_002121591.1| cold-shock DNA-binding domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932913|gb|ACG57613.1| cold-shock DNA-binding domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 71 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 7/75 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV--ASAGLFNLTEGQLVTYDYVQ 58 M G++KW++ +KGYGF+T + ++ DVF+H SA+ G L +GQ V ++ Q Sbjct: 1 MGITGTVKWFSKEKGYGFLTRD---DNQGDVFVHFSAIDPNRQGFKTLVQGQRVEFEVDQ 57 Query: 59 NDANGKYSAENLKLV 73 + + A+N++++ Sbjct: 58 DSKGPR--AKNVRVL 70 >gi|77360666|ref|YP_340241.1| cold-shock RNA chaperone [Pseudoalteromonas haloplanktis TAC125] gi|76875577|emb|CAI86798.1| nucleic acid-binding domain, cold-shock RNA chaperone [Pseudoalteromonas haloplanktis TAC125] Length = 72 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI +G D+F H S + G L GQ VT++ Q Sbjct: 1 MACGKVKWFNNAKGFGFIVEDGCEN---DIFAHYSTIVMDGYKTLKAGQDVTFELEQGPK 57 Query: 62 NGKYSAENL 70 A+N+ Sbjct: 58 G--LHAKNI 64 >gi|169796394|ref|YP_001714187.1| cold shock-like protein [Acinetobacter baumannii AYE] gi|213156868|ref|YP_002318913.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii AB0057] gi|215483856|ref|YP_002326081.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294] gi|169149321|emb|CAM87205.1| cold shock-like protein [Acinetobacter baumannii AYE] gi|213056028|gb|ACJ40930.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii AB0057] gi|213988514|gb|ACJ58813.1| Cold shock-like protein cspG [Acinetobacter baumannii AB307-0294] Length = 69 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI + G DVF H ++S+G L EGQ V+++ Q Sbjct: 7 GTVKWFNETKGFGFIQQDT----GPDVFAHFKEISSSGFKTLYEGQRVSFNIAQGQKG-- 60 Query: 65 YSAENL 70 +A N+ Sbjct: 61 PTATNI 66 >gi|238765641|ref|ZP_04626525.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638] gi|238696140|gb|EEP88973.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638] Length = 57 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW+N DKG+GFITP + DVF+H SA+ S L EGQ V + Sbjct: 6 TGLVKWFNADKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSIE 56 >gi|71725899|gb|AAZ39068.1| cold shock protein [Exiguobacterium antarcticum] Length = 67 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 4/49 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G +KW+N +KG+GFI E SGDDVF+H SA+ + G +L EGQ V+ Sbjct: 4 GKVKWFNAEKGFGFIERE----SGDDVFVHFSAIQTDGFKSLDEGQEVS 48 >gi|304391309|ref|ZP_07373253.1| probable cold shock protein y4ch [Ahrensia sp. R2A130] gi|303296665|gb|EFL91021.1| probable cold shock protein y4ch [Ahrensia sp. R2A130] Length = 68 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K++N KGYGFITP+ + G D+F+H SAV +GL L+EG +T+D + Sbjct: 2 QGHVKFFNAAKGYGFITPD---DGGADIFVHISAVEQSGLTTLSEGSAITFDVEPDKKGK 58 Query: 64 KYSAENLKL 72 A +LK+ Sbjct: 59 GPKAIDLKV 67 >gi|219119929|ref|XP_002180715.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408188|gb|EEC48123.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 71 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW++ KG+GFI P+ + +DVF+H+++V S G +L EG+ V + ++D G Sbjct: 8 NGTVKWFDVKKGFGFIVPD---DGSEDVFVHQTSVHSEGFRSLAEGEPVEFSIKEDD-RG 63 Query: 64 KYSAENLK 71 + SAE + Sbjct: 64 RKSAERVT 71 >gi|116748014|ref|YP_844701.1| cold-shock DNA-binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697078|gb|ABK16266.1| cold-shock DNA-binding protein family [Syntrophobacter fumaroxidans MPOB] Length = 67 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI +G DVF+H SA+ AG +L EG+ V ++ Q + Sbjct: 1 MAEGRVKWFNEKKGYGFIETDGQG----DVFVHYSAIEGAGFRSLNEGEQVRFEVEQG-S 55 Query: 62 NGKYSAENLKL 72 G + ++ Sbjct: 56 KGPQAVRVQRV 66 >gi|120555865|ref|YP_960216.1| cold-shock DNA-binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120325714|gb|ABM20029.1| cold shock protein E (CspE) [Marinobacter aquaeolei VT8] Length = 68 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFIT E +G DVF+H S++ G L EGQ V + + Sbjct: 5 KGNVKFFNEAKGFGFITRE----NGADVFVHYSSIQGGGFKTLAEGQEVEFTVTEGQKG- 59 Query: 64 KYSAENL 70 AEN+ Sbjct: 60 -PQAENV 65 >gi|169347342|ref|ZP_02866280.1| hypothetical protein CLOSPI_00057 [Clostridium spiroforme DSM 1552] gi|169293959|gb|EDS76092.1| hypothetical protein CLOSPI_00057 [Clostridium spiroforme DSM 1552] Length = 65 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI G DVF+H S + G L EG+LV +D Q++ G Sbjct: 2 QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQIEQDGYKTLNEGELVEFDLYQSE-RG 56 Query: 64 KYSAENLKL 72 + +K+ Sbjct: 57 MQAKHVVKI 65 >gi|332535445|ref|ZP_08411230.1| cold shock protein CspD [Pseudoalteromonas haloplanktis ANT/505] gi|332035128|gb|EGI71641.1| cold shock protein CspD [Pseudoalteromonas haloplanktis ANT/505] Length = 72 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI +G D+F H S + G L GQ VT++ Q Sbjct: 1 MACGKVKWFNNAKGFGFIVEDGCEN---DIFAHYSTIVMDGYKTLKAGQDVTFELEQGPK 57 Query: 62 NGKYSAENL 70 A+N+ Sbjct: 58 G--LHAKNI 64 >gi|326389103|ref|ZP_08210684.1| cold-shock DNA-binding protein family protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206409|gb|EGD57245.1| cold-shock DNA-binding protein family protein [Novosphingobium nitrogenifigens DSM 19370] Length = 164 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K++N KG+GFI E + G+DVF+H SAV AGL L EGQ + ++ V D G Sbjct: 10 KGVVKFFNAQKGFGFIQRE---DGGEDVFVHISAVERAGLEGLAEGQQLQFNLV--DRGG 64 Query: 64 KYSAENLKLV 73 K SA +L++V Sbjct: 65 KISAADLQVV 74 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT + + D F+H SAV +GL L EG + +D + D G Sbjct: 97 TGTVKFFNSMKGFGFITRD---DGQPDAFVHISAVERSGLRELNEGDKLEFDL-EVDRRG 152 Query: 64 KYSAENL 70 K+SA NL Sbjct: 153 KHSAVNL 159 >gi|261212918|ref|ZP_05927202.1| cold shock protein CspG [Vibrio sp. RC341] gi|262402962|ref|ZP_06079522.1| cold shock transcriptional regulator CspA [Vibrio sp. RC586] gi|260837983|gb|EEX64660.1| cold shock protein CspG [Vibrio sp. RC341] gi|262350461|gb|EEY99594.1| cold shock transcriptional regulator CspA [Vibrio sp. RC586] Length = 70 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFITP+ G DVF+H +++AS G+ L EGQ V + Q Sbjct: 6 TGSVKWFNESKGFGFITPDI---GGSDVFVHFNSIASGGVKTLFEGQKVNFSIEQGSKG- 61 Query: 64 KYSAENL 70 A N+ Sbjct: 62 -LQAVNV 67 >gi|269836302|ref|YP_003318530.1| cold-shock DNA-binding domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269785565|gb|ACZ37708.1| cold-shock DNA-binding domain protein [Sphaerobacter thermophilus DSM 20745] Length = 77 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 8/77 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KWY+P+KGYGFI + + D+F+HRSA++ + L EG V +D + Sbjct: 1 MTTGTVKWYDPEKGYGFIARD---DGDSDLFVHRSAISGS---ELNEGDRVEFDVTSSPK 54 Query: 62 NGKYSAENLKLVPKSSN 78 + AE++++ + N Sbjct: 55 GPR--AEHVRVTEPNLN 69 >gi|209877068|ref|XP_002139976.1| cold-shock DNA-binding domain-containing protein [Cryptosporidium muris RN66] gi|209555582|gb|EEA05627.1| cold-shock DNA-binding domain-containing protein [Cryptosporidium muris RN66] Length = 119 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M H G KW++ KG+GFITP+ + +D+F+H+ + G +L + + V Y+ V+ D Sbjct: 1 MPHSGVCKWFDSAKGFGFITPD---DGSEDIFVHQQNIKVEGFRSLGQAERVEYE-VETD 56 Query: 61 ANGKYSAENL 70 G+ A N+ Sbjct: 57 DKGRRKAVNV 66 >gi|320012738|gb|ADW07588.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] Length = 67 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI +G G +VF H S +A+ GL L EGQ VT+D Q Sbjct: 1 MSSGTVKWFNAAKGFGFIEQDG---DGAEVFAHFSNIAAQGLPELFEGQKVTFDVTQGPK 57 Query: 62 NGKYSAENL 70 AEN+ Sbjct: 58 G--PMAENI 64 >gi|50955362|ref|YP_062650.1| cold-shock protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951844|gb|AAT89545.1| cold-shock protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 72 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%) Query: 7 IKWYNPDKGYGFITPEGSTESGD-------DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 +KW+N +KGYGFIT + + + G+ DVF+H SA+ G L EGQ V ++ Sbjct: 1 MKWFNAEKGYGFITVDSNVDGGEQNVTVHQDVFVHYSAIDMNGYKVLEEGQQVEFEVGTG 60 Query: 60 DANGKYSAENLKLV 73 AE+++ + Sbjct: 61 SKG--PQAESVRPL 72 >gi|296113754|ref|YP_003627692.1| cold shock-like protein [Moraxella catarrhalis RH4] gi|295921448|gb|ADG61799.1| cold shock-like protein [Moraxella catarrhalis RH4] gi|326562103|gb|EGE12431.1| cold shock-like protein [Moraxella catarrhalis 7169] gi|326564532|gb|EGE14758.1| cold shock-like protein [Moraxella catarrhalis 46P47B1] gi|326565716|gb|EGE15879.1| cold shock-like protein [Moraxella catarrhalis 12P80B1] gi|326566284|gb|EGE16436.1| cold shock-like protein [Moraxella catarrhalis 103P14B1] gi|326567064|gb|EGE17186.1| cold shock-like protein [Moraxella catarrhalis BC1] gi|326568328|gb|EGE18408.1| cold shock-like protein [Moraxella catarrhalis BC7] gi|326572229|gb|EGE22224.1| cold shock-like protein [Moraxella catarrhalis BC8] gi|326574571|gb|EGE24511.1| cold shock-like protein [Moraxella catarrhalis O35E] gi|326574827|gb|EGE24757.1| cold shock-like protein [Moraxella catarrhalis 101P30B1] gi|326576151|gb|EGE26066.1| cold shock-like protein [Moraxella catarrhalis CO72] Length = 70 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI + G DVF H SA+ +G L EGQ V + + G Sbjct: 7 GTVKWFNESKGFGFIAQD---NGGQDVFAHYSAITGSGFKTLAEGQKVAF-ILGEGKKGP 62 Query: 65 YSAENLKL 72 + E K+ Sbjct: 63 QAEEIEKV 70 >gi|229828454|ref|ZP_04454523.1| hypothetical protein GCWU000342_00515 [Shuttleworthia satelles DSM 14600] gi|229793048|gb|EEP29162.1| hypothetical protein GCWU000342_00515 [Shuttleworthia satelles DSM 14600] Length = 67 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW++ KGYGFI S E+G DVF+H S + G L EG V ++ +D Sbjct: 1 MAKGTVKWFDDRKGYGFI----SDEAGKDVFVHFSKLNMEGFKTLKEGATVDFEVEDSDK 56 Query: 62 NGKYSAENLKLVP 74 A ++ +V Sbjct: 57 G--PQAIDVTVVE 67 >gi|152979111|ref|YP_001344740.1| cold-shock DNA-binding domain-containing protein [Actinobacillus succinogenes 130Z] gi|150840834|gb|ABR74805.1| putative cold-shock DNA-binding domain protein [Actinobacillus succinogenes 130Z] Length = 69 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI EGS E D+F H S + G +L GQ V ++ + D Sbjct: 1 MEVGVVKWFNNAKGFGFINAEGSDE---DIFAHFSVIEMDGYRSLKAGQKVNFEVIHGDK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|167755599|ref|ZP_02427726.1| hypothetical protein CLORAM_01113 [Clostridium ramosum DSM 1402] gi|237734348|ref|ZP_04564829.1| cold shock protein cspC [Mollicutes bacterium D7] gi|167704538|gb|EDS19117.1| hypothetical protein CLORAM_01113 [Clostridium ramosum DSM 1402] gi|229382578|gb|EEO32669.1| cold shock protein cspC [Coprobacillus sp. D7] Length = 65 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI G DVF+H S + G L EG+LV ++ Q+D G Sbjct: 2 QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQITQDGYKTLNEGELVEFELYQSD-RG 56 Query: 64 KYSAENLKL 72 + +K+ Sbjct: 57 MQAKHVVKI 65 >gi|229528227|ref|ZP_04417618.1| cold-shock protein DNA-binding [Vibrio cholerae 12129(1)] gi|229334589|gb|EEO00075.1| cold-shock protein DNA-binding [Vibrio cholerae 12129(1)] Length = 72 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFITP+ G DVF+H +++ S G+ L EGQ V + Q Sbjct: 8 TGSVKWFNESKGFGFITPDS---GGSDVFVHFNSITSGGVKTLFEGQKVNFSIEQGSKG- 63 Query: 64 KYSAENL 70 A N+ Sbjct: 64 -LQAVNV 69 >gi|260914143|ref|ZP_05920616.1| cold shock domain protein CspD [Pasteurella dagmatis ATCC 43325] gi|260631776|gb|EEX49954.1| cold shock domain protein CspD [Pasteurella dagmatis ATCC 43325] Length = 69 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI+ EGS D+F H S + G +L GQ V ++ V D Sbjct: 1 MEVGVVKWFNNAKGFGFISAEGSD---ADIFAHYSVIEMEGYRSLKAGQKVQFEVVHGD- 56 Query: 62 NGKYSAENLKLVP 74 G ++ + + +V Sbjct: 57 KGSHATKIVPIVE 69 >gi|296394697|ref|YP_003659581.1| cold-shock DNA-binding domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181844|gb|ADG98750.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM 44985] Length = 68 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60 + G++KW+N +KG+GFI PE + D+F+H + + + G L EGQ V ++ + Sbjct: 1 MSLGTVKWFNEEKGFGFIAPE---DGSKDLFVHFTGIVENGGFRTLHEGQRVQFE-AEAG 56 Query: 61 ANGKYSAENLKL 72 G + + + Sbjct: 57 QRGPQAVSVVAV 68 >gi|223935943|ref|ZP_03627858.1| cold-shock DNA-binding domain protein [bacterium Ellin514] gi|223895544|gb|EEF61990.1| cold-shock DNA-binding domain protein [bacterium Ellin514] Length = 68 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KG+GFI + SG DVF+H +++ +G L EG+ V ++ V +D Sbjct: 1 MASGKVKWFDNKKGFGFIAQD----SGQDVFVHHTSILGSGFKTLNEGEEVNFEVVSSDK 56 Query: 62 NGKYSAENLKLV 73 K A+N++ V Sbjct: 57 GPK--AQNVQRV 66 >gi|319776304|ref|YP_004138792.1| cold shock protein [Haemophilus influenzae F3047] gi|319897065|ref|YP_004135260.1| cold shock protein homolog [Haemophilus influenzae F3031] gi|317432569|emb|CBY80929.1| cold shock protein homolog [Haemophilus influenzae F3031] gi|317450895|emb|CBY87120.1| cold shock protein homolog [Haemophilus influenzae F3047] Length = 72 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI+ EG D+F H S + G +L GQ V ++ + D Sbjct: 1 MEIGIVKWFNNAKGFGFISAEGVD---ADIFAHYSVIEMDGYRSLKAGQKVQFEVLHGDK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|28898663|ref|NP_798268.1| cold shock transcriptional regulator CspA [Vibrio parahaemolyticus RIMD 2210633] gi|260364904|ref|ZP_05777475.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus K5030] gi|260879696|ref|ZP_05892051.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AN-5034] gi|260898831|ref|ZP_05907272.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus Peru-466] gi|28806881|dbj|BAC60152.1| cold shock transcriptional regulator CspA [Vibrio parahaemolyticus RIMD 2210633] gi|308086661|gb|EFO36356.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus Peru-466] gi|308093445|gb|EFO43140.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus AN-5034] gi|308111634|gb|EFO49174.1| cold-shock DNA-binding domain protein [Vibrio parahaemolyticus K5030] gi|328472899|gb|EGF43747.1| cold shock transcriptional regulator CspA [Vibrio parahaemolyticus 10329] Length = 70 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFI+PE G+D+F+H ++ S G L+EGQ V+Y V+ G Sbjct: 6 TGSVKWFNETKGFGFISPE---NGGEDLFVHFQSIVSTGFKTLSEGQKVSY-VVEQGKKG 61 Query: 64 KYSAEN 69 + E Sbjct: 62 LQAGEV 67 >gi|251791888|ref|YP_003006608.1| cold-shock DNA-binding domain-containing protein [Aggregatibacter aphrophilus NJ8700] gi|247533275|gb|ACS96521.1| cold-shock DNA-binding domain protein [Aggregatibacter aphrophilus NJ8700] Length = 69 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI P + DVF+H S + L EG V Y+ VQ+ G Sbjct: 5 NGTVKWFNSTKGFGFIAP---ADGTKDVFVHFSGIVGNNFRTLNEGDRVAYN-VQDSQRG 60 Query: 64 KYSAEN 69 + E Sbjct: 61 PTAVEV 66 >gi|297580078|ref|ZP_06942005.1| cold-shock DNA-binding domain-containing protein [Vibrio cholerae RC385] gi|297535724|gb|EFH74558.1| cold-shock DNA-binding domain-containing protein [Vibrio cholerae RC385] Length = 70 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N +KG+GFITP+ G DVF+H +++AS G+ L EGQ V + Q Sbjct: 6 TGSVKWFNENKGFGFITPDI---GGSDVFVHFNSIASGGVKTLFEGQKVNFSIEQGSKG- 61 Query: 64 KYSAENL 70 A N+ Sbjct: 62 -LQAVNV 67 >gi|296284922|ref|ZP_06862920.1| cold shock protein [Citromicrobium bathyomarinum JL354] Length = 270 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K++N KG+GFI EG GDDVF+H SAV AGL L EGQ + ++ V D G Sbjct: 103 KGQVKFFNGQKGFGFIQQEG---GGDDVFVHISAVERAGLEGLAEGQELEFNLV--DRGG 157 Query: 64 KYSAENLKLV 73 K SA++L++V Sbjct: 158 KISAQDLQVV 167 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GF+ + + D F+H SAV +GL + EG+ +D + D G Sbjct: 203 TGTVKFFNSMKGFGFLVRD---DGQPDAFVHISAVERSGLSQINEGERYEFDL-EVDRRG 258 Query: 64 KYSAENLKLVPK 75 KYSA NL V + Sbjct: 259 KYSAVNLVPVQE 270 >gi|52425150|ref|YP_088287.1| CspC protein [Mannheimia succiniciproducens MBEL55E] gi|52307202|gb|AAU37702.1| CspC protein [Mannheimia succiniciproducens MBEL55E] Length = 69 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI EGS D+F H S + G +L GQ V ++ V + Sbjct: 1 MEVGVVKWFNNAKGFGFINAEGSD---ADIFAHYSVIEMDGYRSLKAGQKVNFEVVHGEK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|260753178|ref|YP_003226071.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552541|gb|ACV75487.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 303 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AGL +L EG ++++ + D GK Sbjct: 237 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGLPSLNEGDRLSFEL-EVDRRGK 292 Query: 65 YSAENL 70 Y+A NL Sbjct: 293 YAAVNL 298 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K++N KG+GF+ + + G+DVF+H SAV AGL L EGQ +++ V D G Sbjct: 137 TGVVKFFNSQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGG 191 Query: 64 KYSAENLKL 72 + SA NL + Sbjct: 192 RVSATNLGI 200 >gi|16273340|ref|NP_439584.1| cold shock-like protein [Haemophilus influenzae Rd KW20] gi|68250036|ref|YP_249148.1| cold shock-like protein CspD [Haemophilus influenzae 86-028NP] gi|145630737|ref|ZP_01786515.1| cold shock-like protein CspD [Haemophilus influenzae R3021] gi|145632798|ref|ZP_01788531.1| cold shock-like protein CspD [Haemophilus influenzae 3655] gi|145634990|ref|ZP_01790697.1| cold shock-like protein CspD [Haemophilus influenzae PittAA] gi|145636144|ref|ZP_01791814.1| cold shock-like protein CspD [Haemophilus influenzae PittHH] gi|145638951|ref|ZP_01794559.1| cold shock-like protein CspD [Haemophilus influenzae PittII] gi|145641592|ref|ZP_01797169.1| cold shock-like protein CspD [Haemophilus influenzae R3021] gi|148825975|ref|YP_001290728.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae PittEE] gi|148826935|ref|YP_001291688.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae PittGG] gi|229844090|ref|ZP_04464231.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae 6P18H1] gi|229846710|ref|ZP_04466817.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae 7P49H1] gi|260580732|ref|ZP_05848558.1| cold shock domain-containing protein CspD [Haemophilus influenzae RdAW] gi|260583054|ref|ZP_05850836.1| cold shock domain-containing protein CspD [Haemophilus influenzae NT127] gi|1169113|sp|P46449|CSPD_HAEIN RecName: Full=Cold shock-like protein CspD gi|1574273|gb|AAC23082.1| cold shock-like protein (cspD) [Haemophilus influenzae Rd KW20] gi|68058235|gb|AAX88488.1| cold shock-like protein CspD [Haemophilus influenzae 86-028NP] gi|144983619|gb|EDJ91079.1| cold shock-like protein CspD [Haemophilus influenzae R3021] gi|144986454|gb|EDJ93020.1| cold shock-like protein CspD [Haemophilus influenzae 3655] gi|145267856|gb|EDK07853.1| cold shock-like protein CspD [Haemophilus influenzae PittAA] gi|145270666|gb|EDK10599.1| cold shock-like protein CspD [Haemophilus influenzae PittHH] gi|145271923|gb|EDK11832.1| cold shock-like protein CspD [Haemophilus influenzae PittII] gi|145273639|gb|EDK13508.1| cold shock-like protein CspD [Haemophilus influenzae 22.4-21] gi|148716135|gb|ABQ98345.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae PittEE] gi|148718177|gb|ABQ99304.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae PittGG] gi|229810199|gb|EEP45918.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae 7P49H1] gi|229813084|gb|EEP48772.1| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae 6P18H1] gi|260092549|gb|EEW76486.1| cold shock domain-containing protein CspD [Haemophilus influenzae RdAW] gi|260093905|gb|EEW77811.1| cold shock domain-containing protein CspD [Haemophilus influenzae NT127] gi|301170221|emb|CBW29825.1| cold shock protein homolog [Haemophilus influenzae 10810] gi|309750920|gb|ADO80904.1| Cold shock protein CspD [Haemophilus influenzae R2866] gi|309973115|gb|ADO96316.1| Cold shock protein CspD [Haemophilus influenzae R2846] Length = 72 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI+ EG D+F H S + G +L GQ V ++ + +D Sbjct: 1 MEIGIVKWFNNAKGFGFISAEGVD---ADIFAHYSVIEMDGYRSLKAGQKVQFEVLHSDK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|103486965|ref|YP_616526.1| cold-shock DNA-binding domain-containing protein [Sphingopyxis alaskensis RB2256] gi|98977042|gb|ABF53193.1| cold-shock DNA-binding protein family [Sphingopyxis alaskensis RB2256] Length = 90 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++K++N DKGYGFI E + D F+H +AV +AG+ L + Q V+Y+ + Sbjct: 22 LMAIGTVKFFNNDKGYGFIENE---DGSGDSFVHITAVQAAGMDTLNKEQRVSYEL-ETG 77 Query: 61 ANGKYSAENLK 71 NGK SA NL+ Sbjct: 78 KNGKVSAINLQ 88 >gi|119503291|ref|ZP_01625375.1| putative Cold-shock protein [marine gamma proteobacterium HTCC2080] gi|119460937|gb|EAW42028.1| putative Cold-shock protein [marine gamma proteobacterium HTCC2080] Length = 70 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GFIT T+ +D+F+H A+ G +L EG V + + D Sbjct: 4 RQTGVVKWFNNAKGFGFIT---MTDREEDIFVHFRAIQGDGYRSLNEGDAVEFTLAEGD- 59 Query: 62 NGKYSAENLK 71 G + E K Sbjct: 60 KGLQAEEVTK 69 >gi|254456290|ref|ZP_05069719.1| 'Cold-shock' DNA-binding domain, putative [Candidatus Pelagibacter sp. HTCC7211] gi|207083292|gb|EDZ60718.1| 'Cold-shock' DNA-binding domain, putative [Candidatus Pelagibacter sp. HTCC7211] Length = 68 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+NP KG+GFI E DVF+H SAV AG+ L EGQ +T+D V++ Sbjct: 1 MSLQGKVKWFNPTKGFGFIEREDKE---KDVFVHVSAVRDAGMNGLDEGQALTFD-VEDG 56 Query: 61 ANGKYSAENLK 71 G SA NLK Sbjct: 57 PKGP-SAVNLK 66 >gi|313681671|ref|YP_004059409.1| cold-shock DNA-binding protein family [Sulfuricurvum kujiense DSM 16994] gi|313154531|gb|ADR33209.1| cold-shock DNA-binding protein family [Sulfuricurvum kujiense DSM 16994] Length = 72 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 7/72 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFI + G DVF+H + S G +L EGQ VTY Q + Sbjct: 6 NGTVKWFNSEKGFGFIQQD---NGGKDVFVHFRQINSTGYGRVSLDEGQKVTYTVGQGEK 62 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 63 G--PQAENVTAL 72 >gi|262377174|ref|ZP_06070399.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] gi|262307912|gb|EEY89050.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] Length = 69 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF H ++S+G L EGQ V++ V + G Sbjct: 6 TGTVKWFNETKGFGFIQQE----SGPDVFAHFKEISSSGFKTLFEGQRVSFSVV-DGQKG 60 Query: 64 KYSAENLKL 72 + + L Sbjct: 61 PNAINIVAL 69 >gi|255318100|ref|ZP_05359344.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] gi|262379848|ref|ZP_06073004.1| cold shock domain-containing protein CspD [Acinetobacter radioresistens SH164] gi|255304811|gb|EET83984.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] gi|262299305|gb|EEY87218.1| cold shock domain-containing protein CspD [Acinetobacter radioresistens SH164] Length = 69 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E SG DVF H S +AS+G L EGQ V++ Q G Sbjct: 6 NGTVKWFNEAKGFGFIQQE----SGSDVFAHFSEIASSGFKTLFEGQQVSFSVAQGQ-KG 60 Query: 64 KYSAENLKL 72 + + L Sbjct: 61 PNAVNIVAL 69 >gi|154508286|ref|ZP_02043928.1| hypothetical protein ACTODO_00782 [Actinomyces odontolyticus ATCC 17982] gi|293194037|ref|ZP_06609919.1| putative cold shock protein [Actinomyces odontolyticus F0309] gi|153797920|gb|EDN80340.1| hypothetical protein ACTODO_00782 [Actinomyces odontolyticus ATCC 17982] gi|292819791|gb|EFF78800.1| putative cold shock protein [Actinomyces odontolyticus F0309] Length = 69 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60 + G+IKW+N KG+GFITP+ + DVF+H S + +G L EG+ V Y+ ++ Sbjct: 1 MATGTIKWFNDAKGFGFITPD---DESGDVFVHYSNIIGQSGRRTLLEGEKVEYEAIEGP 57 Query: 61 ANGKYSAENL 70 A N+ Sbjct: 58 KG--LQAMNV 65 >gi|15602346|ref|NP_245418.1| CspD [Pasteurella multocida subsp. multocida str. Pm70] gi|12720739|gb|AAK02565.1| CspD [Pasteurella multocida subsp. multocida str. Pm70] Length = 69 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI+ EG+ D+F H S + G +L GQ V ++ V D Sbjct: 1 MEVGVVKWFNNAKGFGFISAEGTD---ADIFAHYSVIEMEGYRSLKAGQKVQFEVVHGDK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|329894353|ref|ZP_08270223.1| putative Cold-shock protein [gamma proteobacterium IMCC3088] gi|328923149|gb|EGG30472.1| putative Cold-shock protein [gamma proteobacterium IMCC3088] Length = 134 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI +SGD++F+H A+ + G +L +G V++ D Sbjct: 69 RETGTVKWFNATKGFGFIV----CDSGDEIFVHFRALRNGGRRSLKDGLPVSFVITSGDR 124 Query: 62 NGKYSAENLKLV 73 A +++++ Sbjct: 125 G--PQASDVEIL 134 >gi|254470060|ref|ZP_05083464.1| cold-shock DNA-binding domain protein [Pseudovibrio sp. JE062] gi|211960371|gb|EEA95567.1| cold-shock DNA-binding domain protein [Pseudovibrio sp. JE062] Length = 215 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++K++ DKG+GFITP+ E +DVF+H SAV +GL L GQ ++++ + Sbjct: 121 RQSGTVKFFKLDKGFGFITPD---EGENDVFVHISAVERSGLTTLDSGQRISFETEPDRR 177 Query: 62 NGKYSAENLKL 72 A L+L Sbjct: 178 GKGPKAVELRL 188 >gi|194335526|ref|YP_002017320.1| cold-shock DNA-binding domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308003|gb|ACF42703.1| cold-shock DNA-binding domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 69 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KGYGFI + G DVF+H SA+ G L EGQ V + Q Sbjct: 6 EGTVKWFNEEKGYGFIEQ----KGGKDVFVHHSAINGTGRKTLVEGQKVMMEVTQGAKG- 60 Query: 64 KYSAENLKLV 73 AE++ + Sbjct: 61 -LQAEDVTPL 69 >gi|330877987|gb|EGH12136.1| cold-shock DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 73 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ + SGDD+F+H A+ G L EGQ V + V N G Sbjct: 6 TGTVKWFNTSKGFGFISRD----SGDDIFVHFRAIRGEGHRVLVEGQRVGFS-VMNRDKG 60 Query: 64 KYSAENLKLVPK 75 + + + +P+ Sbjct: 61 LQAEDVIAALPR 72 >gi|295115086|emb|CBL35933.1| cold-shock DNA-binding protein family [butyrate-producing bacterium SM4/1] Length = 76 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++KW+N +G+GF+ E E F+H S + G L EGQ VT++ +++ Sbjct: 1 MRVKGTVKWFNARRGFGFVCDEDGLEH----FVHYSQIQMEGFKRLGEGQSVTFEIGEDE 56 Query: 61 ANGKYSAENLKLVPKSS 77 G+ A L+++P+ Sbjct: 57 -KGRSVA--LEVIPEEQ 70 >gi|325121612|gb|ADY81135.1| cold shock-like protein [Acinetobacter calcoaceticus PHEA-2] Length = 69 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KG+GFI + G DVF H ++S+G L EGQ V+++ Q Sbjct: 7 GTVKWFNETKGFGFIQQDT----GPDVFAHFKEISSSGFKTLYEGQRVSFNIAQGQKG 60 >gi|220920391|ref|YP_002495692.1| cold-shock DNA-binding domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219944997|gb|ACL55389.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans ORS 2060] Length = 242 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KWY+P KG+GF++ + G DVF+HRSA+A AGL +L EGQ VT D V+ + Sbjct: 178 GTVKWYDPAKGFGFVSV---KDGGKDVFVHRSALARAGLDSLAEGQQVTMDVVEGQKGRE 234 Query: 65 YSAENL 70 + ++ Sbjct: 235 AQSISV 240 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ + D FLH AV +AG +L G +T Q Sbjct: 67 TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHTDLLPGTRLTVQTAQGQKG--P 121 Query: 66 SAENLKLVPKSS 77 N+ V S+ Sbjct: 122 QVTNITSVDTST 133 >gi|255319459|ref|ZP_05360673.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] gi|262378517|ref|ZP_06071674.1| cold shock domain-containing protein CspD [Acinetobacter radioresistens SH164] gi|255303399|gb|EET82602.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] gi|262299802|gb|EEY87714.1| cold shock domain-containing protein CspD [Acinetobacter radioresistens SH164] Length = 70 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G +KW+N KG+GFI GDDVF+H A+ G +L +GQ V + V+ Sbjct: 4 REQGVVKWFNDTKGFGFIQ----RNGGDDVFVHFRAIMGEGHRSLRDGQRVEFSVVKGQK 59 Query: 62 NGKYSAENLKLV 73 + AE ++ + Sbjct: 60 G--FQAEEVQPL 69 >gi|91203628|emb|CAJ71281.1| similar to Cold shock protein (CspB) [Candidatus Kuenenia stuttgartiensis] Length = 79 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KW++ KG+GFI + G DVF+H S + G L +G+ V ++ V+ Sbjct: 11 IMAIGKVKWFDAKKGFGFIEQD----GGGDVFVHYSNIGGDGFKTLEDGEKVEFEVVEGA 66 Query: 61 ANGKYSAEN 69 + N Sbjct: 67 KGLQAQKVN 75 >gi|89897618|ref|YP_521105.1| hypothetical protein DSY4872 [Desulfitobacterium hafniense Y51] gi|219670745|ref|YP_002461180.1| cold-shock DNA-binding protein [Desulfitobacterium hafniense DCB-2] gi|89337066|dbj|BAE86661.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219541005|gb|ACL22744.1| cold-shock DNA-binding domain protein [Desulfitobacterium hafniense DCB-2] Length = 65 Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KGYGFI + G D+F+H S++ G L EGQ V +D VQ Sbjct: 3 GKVKWFSKQKGYGFIEGDH----GQDIFVHFSSIMGDGFRTLEEGQGVEFDIVQGPRG-- 56 Query: 65 YSAENLK 71 A N++ Sbjct: 57 DQASNVQ 63 >gi|329937163|ref|ZP_08286762.1| putative cold shock protein [Streptomyces griseoaurantiacus M045] gi|329303444|gb|EGG47330.1| putative cold shock protein [Streptomyces griseoaurantiacus M045] Length = 62 Score = 88.5 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 5/64 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +KG+GFI +G G DVF H S +A++G L EGQ VT+D Q Sbjct: 1 MKWFNSEKGFGFIEQDG---GGADVFAHYSNIATSGFRELQEGQKVTFDVTQGQKG--PQ 55 Query: 67 AENL 70 AEN+ Sbjct: 56 AENI 59 >gi|124514284|gb|EAY55798.1| cold shock protein [Leptospirillum rubarum] Length = 52 Score = 88.5 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 4/55 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + RG +KW+N +KGYGFI+ E +G+D+F+H SA+ +G L EGQLV ++ Sbjct: 1 MARGHVKWFNANKGYGFISQE----NGEDIFVHYSAIGGSGFKTLEEGQLVEFEI 51 >gi|71083962|ref|YP_266682.1| cold shock DNA-binding domain-containing protein [Candidatus Pelagibacter ubique HTCC1062] gi|91762969|ref|ZP_01264934.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter ubique HTCC1002] gi|71063075|gb|AAZ22078.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter ubique HTCC1062] gi|91718771|gb|EAS85421.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter ubique HTCC1002] Length = 68 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+NP KG+GFI E DVF+H SAV AG+ L EGQ +T++ V++ Sbjct: 1 MSLQGKVKWFNPTKGFGFIEREDKE---KDVFVHVSAVRDAGMNGLDEGQALTFE-VEDG 56 Query: 61 ANGKYSAENLK 71 G SA NLK Sbjct: 57 PKGP-SAVNLK 66 >gi|77410386|ref|ZP_00786777.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae COH1] gi|77171004|gb|EAO74482.1| cold shock protein, CSD family-related protein [Streptococcus agalactiae COH1] Length = 64 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N +KG+GFI+ +E+G DVF H S + G L EGQ VT+D Sbjct: 1 MTQGTVKWFNSEKGFGFIS----SETGTDVFAHFSEIKVDGFKTLEEGQKVTFDIQDGQ 55 >gi|317405219|gb|EFV85558.1| cold shock-like protein cspA [Achromobacter xylosoxidans C54] Length = 67 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K +N +KGYGFITPE G D+F H S + +G +L E Q V++ N Sbjct: 1 METGVVKGFNSEKGYGFITPEA---GGKDLFAHFSEIQGSGFKSLEENQRVSF-VTANGP 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPQA 61 >gi|302668966|ref|YP_003832791.1| cold shock domain protein CspD2 [Butyrivibrio proteoclasticus B316] gi|302397306|gb|ADL36209.1| cold shock domain protein CspD2 [Butyrivibrio proteoclasticus B316] Length = 72 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 47/70 (67%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KG+GFIT +E G+DVF+H SA++S G LT+ + V +D V+ D G Sbjct: 7 KGAVKWFDNYKGFGFIT----SEDGEDVFVHYSAISSDGYRKLTQDEKVEFD-VRIDDKG 61 Query: 64 KYSAENLKLV 73 + A N++ + Sbjct: 62 RTVAVNVRKI 71 >gi|315634348|ref|ZP_07889635.1| cold shock domain protein CspD [Aggregatibacter segnis ATCC 33393] gi|315476938|gb|EFU67683.1| cold shock domain protein CspD [Aggregatibacter segnis ATCC 33393] Length = 69 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI+ EGS D+F H S + G +L GQ V ++ + D Sbjct: 1 MEVGVVKWFNNAKGFGFISAEGSD---TDIFAHYSVIEMDGYRSLKAGQKVQFEVIHGDK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|293608625|ref|ZP_06690928.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829198|gb|EFF87560.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 75 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI + G D+F H + + + G L EGQ V + VQ Sbjct: 10 GTVKWFNETKGFGFIA----ADEGKDIFAHFTDIQTQGFKVLLEGQRVEFTVVQGKKG-- 63 Query: 65 YSAENLKLVPKS 76 A N+ ++ S Sbjct: 64 PQASNIVILQNS 75 >gi|119469529|ref|ZP_01612433.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Alteromonadales bacterium TW-7] gi|119447064|gb|EAW28334.1| cold shock protein, transcription antiterminator, affects expression of rpoS and uspA [Alteromonadales bacterium TW-7] Length = 67 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N KG+GFI E +G DVF+H SA++ +G L+EGQ VT+ Q Sbjct: 1 MSVSGKVKFFNEAKGFGFIEQE----NGPDVFVHFSAISGSGFRTLSEGQAVTFSIKQGQ 56 Query: 61 ANGKYSAENLK 71 + AEN++ Sbjct: 57 KGPE--AENVE 65 >gi|171057778|ref|YP_001790127.1| cold-shock DNA-binding domain-containing protein [Leptothrix cholodnii SP-6] gi|170775223|gb|ACB33362.1| cold-shock DNA-binding domain protein [Leptothrix cholodnii SP-6] Length = 72 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDA 61 G +KW++ KG+GFITPE + G D+F H S + G +L E Q V ++ Q Sbjct: 6 QTGIVKWFDDGKGFGFITPE---DGGKDLFAHHSEIRNGGGFRSLQENQRVEFETKQGPK 62 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 63 G--LQAANIRPL 72 >gi|311107231|ref|YP_003980084.1| cold shock protein CapA [Achromobacter xylosoxidans A8] gi|310761920|gb|ADP17369.1| cold shock protein CapA [Achromobacter xylosoxidans A8] Length = 69 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N DKG+GFI PE G D+F H S + G +L E Q V++ Q Sbjct: 3 IETGIVKWFNNDKGFGFIMPEL---GGKDLFAHFSEIQGDGHKSLEENQRVSFVAGQGQK 59 Query: 62 NG 63 Sbjct: 60 GP 61 >gi|300856488|ref|YP_003781472.1| putative cold shock protein CspA [Clostridium ljungdahlii DSM 13528] gi|300436603|gb|ADK16370.1| predicted cold shock protein CspA [Clostridium ljungdahlii DSM 13528] Length = 67 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + G++KW+N +KG+GFI G +DVF+H +A+ S NL EGQ V +D V+ Sbjct: 1 MKIGTVKWFNSEKGFGFIEVPGE----NDVFVHFTAIQSDEPRKNLEEGQKVQFD-VEEG 55 Query: 61 ANGKYSAENLKL 72 G +A +KL Sbjct: 56 PKGLQAANVVKL 67 >gi|111017122|ref|YP_700094.1| cold shock protein [Rhodococcus jostii RHA1] gi|110816652|gb|ABG91936.1| cold shock protein [Rhodococcus jostii RHA1] Length = 119 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+++W+N ++G+GF+ P + DD+F+H S +A G L EGQ V++ + + Sbjct: 53 LRTGTVRWFNAEQGFGFLAP---ADGSDDIFVHVSEIAGDGHRILEEGQRVSFAVCRTET 109 Query: 62 NGKYSAENLKL 72 A ++++ Sbjct: 110 G--DQARDVRI 118 >gi|729219|sp|P41018|CSPB_BACGO RecName: Full=Cold shock protein CspB gi|456240|emb|CAA51791.1| major cold shock protein (CspB) [Sporosarcina globispora] gi|740005|prf||2004289B cold shock protein Length = 57 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 5/62 (8%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 IKW+N +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + G + Sbjct: 1 IKWFNSEKGFGFIEVEGQ----DDVFVHFSAIQGEGFKCLEEGQAVSFEIVEGN-RGPQA 55 Query: 67 AE 68 A Sbjct: 56 AN 57 >gi|293390613|ref|ZP_06634947.1| cold-shock DNA-binding domain protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951147|gb|EFE01266.1| cold-shock DNA-binding domain protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 69 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI P DVF+H S + L EG V Y+ VQ+ G Sbjct: 5 NGTVKWFNSTKGFGFIAP---ANGSKDVFVHFSGIVGNNFRTLNEGDRVAYN-VQDSQRG 60 Query: 64 KYSAEN 69 + E Sbjct: 61 PTAIEV 66 >gi|255020707|ref|ZP_05292768.1| cold-shock protein CspE [Acidithiobacillus caldus ATCC 51756] gi|254969861|gb|EET27362.1| cold-shock protein CspE [Acidithiobacillus caldus ATCC 51756] Length = 62 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 5/65 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFITPE + +DVF+H SA+ G L EG+ V+++ + Sbjct: 1 MKWFNDSKGFGFITPE---DGKEDVFVHHSAIEGTGFKTLAEGERVSFEVTRGPKG--LQ 55 Query: 67 AENLK 71 AE ++ Sbjct: 56 AEKVR 60 >gi|282860603|ref|ZP_06269669.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|282564339|gb|EFB69875.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] Length = 127 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + GDDVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGDDVFVH-SSVLPAGVDALKPGQRVEFGVV-AGQ 54 Query: 62 NGKYSAENLKLVPKSS 77 G + + L P S Sbjct: 55 RGDQALSVVVLDPTPS 70 >gi|88860126|ref|ZP_01134765.1| nucleic acid-binding domain, cold-shock RNA chaperone [Pseudoalteromonas tunicata D2] gi|88818120|gb|EAR27936.1| nucleic acid-binding domain, cold-shock RNA chaperone [Pseudoalteromonas tunicata D2] Length = 72 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI +G E D+F H S + G L GQ VT++ Q Sbjct: 1 MACGKVKWFNNAKGFGFIVADGREE---DIFAHFSTIVMDGYKTLKAGQDVTFEL-QAGP 56 Query: 62 NGKYSAENLK 71 G + A N++ Sbjct: 57 KGLH-ATNIE 65 >gi|261868109|ref|YP_003256031.1| cold shock domain-containing protein CspD [Aggregatibacter actinomycetemcomitans D11S-1] gi|293390022|ref|ZP_06634356.1| cold shock domain protein CspD [Aggregatibacter actinomycetemcomitans D7S-1] gi|261413441|gb|ACX82812.1| cold shock domain protein CspD [Aggregatibacter actinomycetemcomitans D11S-1] gi|290950556|gb|EFE00675.1| cold shock domain protein CspD [Aggregatibacter actinomycetemcomitans D7S-1] Length = 69 Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI+ EGS D+F H S + G +L GQ V ++ + D Sbjct: 1 MEVGVVKWFNNAKGFGFISVEGSD---TDIFAHYSVIEMEGYRSLKAGQKVRFEVIHGD- 56 Query: 62 NGKYSAENLKLVP 74 G ++ + + +V Sbjct: 57 KGSHATKIIPVVE 69 >gi|50085086|ref|YP_046596.1| cold shock-like protein [Acinetobacter sp. ADP1] gi|49531062|emb|CAG68774.1| cold shock-like protein [Acinetobacter sp. ADP1] Length = 69 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI + SG DVF H +AS+G L EGQ V++ V Sbjct: 6 NGTVKWFNEVKGFGFIQQD----SGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKG- 60 Query: 64 KYSAENL 70 SA N+ Sbjct: 61 -PSAVNI 66 >gi|253581358|ref|ZP_04858584.1| cold-shock protein [Fusobacterium varium ATCC 27725] gi|257470862|ref|ZP_05634952.1| cold-shock DNA-binding protein family protein [Fusobacterium ulcerans ATCC 49185] gi|317065065|ref|ZP_07929550.1| cold shock protein CspB [Fusobacterium ulcerans ATCC 49185] gi|251836722|gb|EES65256.1| cold-shock protein [Fusobacterium varium ATCC 27725] gi|313690741|gb|EFS27576.1| cold shock protein CspB [Fusobacterium ulcerans ATCC 49185] Length = 66 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +KG+GF+T +E G D F+H + + G L EGQ VT++ + Sbjct: 1 MLKGTVKWFNKEKGFGFLT----SEDGADYFVHFTGIVGEGFRTLEEGQEVTFEVSEG-K 55 Query: 62 NGKYSAEN 69 G + E Sbjct: 56 KGPMAVEV 63 >gi|257887492|ref|ZP_05667145.1| cold-shock domain-contain protein [Enterococcus faecium 1,141,733] gi|257895987|ref|ZP_05675640.1| cold-shock domain-contain protein [Enterococcus faecium Com12] gi|293377445|ref|ZP_06623647.1| major cold shock protein CspA [Enterococcus faecium PC4.1] gi|257823546|gb|EEV50478.1| cold-shock domain-contain protein [Enterococcus faecium 1,141,733] gi|257832552|gb|EEV58973.1| cold-shock domain-contain protein [Enterococcus faecium Com12] gi|292643963|gb|EFF62071.1| major cold shock protein CspA [Enterococcus faecium PC4.1] Length = 76 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KGYGFI+ + + E +F+H +A+ G L E Q+V ++ ++ + Sbjct: 1 MTTGIVKWFDNKKGYGFISYDDTEE----IFVHFTAIEEEGFKTLEENQVVEFEIIEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGTQAAHVKK 65 >gi|77459814|ref|YP_349321.1| cold-shock DNA-binding protein family protein [Pseudomonas fluorescens Pf0-1] gi|77383817|gb|ABA75330.1| cold shock-like protein CspD [Pseudomonas fluorescens Pf0-1] Length = 93 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 2 VHRGSIKWYNPDKGYGFI---TPEGSTESGD--DVFLHRSAVASAGLFNLTEGQLVTYDY 56 + G +KW+N KG+GFI + EG E G D F H SA+ G L GQ+V ++ Sbjct: 1 MAVGKVKWFNNAKGFGFINTDSREGKDEDGKEIDFFAHYSAIEMDGYKTLKAGQIVKFEI 60 Query: 57 VQNDAN 62 VQ Sbjct: 61 VQGPKG 66 >gi|297836502|ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp. lyrata] gi|297331973|gb|EFH62392.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp. lyrata] Length = 299 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G + W+ KGYGFITP+ + G+++F+H+S++ S G +LT G+ V Y ++GK Sbjct: 11 GKVNWFGDGKGYGFITPD---DGGEELFVHQSSIVSDGYRSLTVGESVEYSITLG-SDGK 66 Query: 65 YSAENLK 71 A N+ Sbjct: 67 TKAVNVT 73 >gi|242247545|ref|NP_001156314.1| RNA-binding protein lin-28-like [Acyrthosiphon pisum] gi|239792625|dbj|BAH72634.1| ACYPI009849 [Acyrthosiphon pisum] Length = 250 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V +G KW+N KG+GF+TP+ + G DVF+H+ + G +L E + V + ++D Sbjct: 70 VRQGICKWFNSKKGFGFVTPD---DGGKDVFVHQRVIKKDGFRSLRENEHVEFTCHESDK 126 Query: 62 N 62 Sbjct: 127 G 127 >gi|192360401|ref|YP_001982239.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107] gi|190686566|gb|ACE84244.1| cold-shock domain family protein [Cellvibrio japonicus Ueda107] Length = 71 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +GYGFIT E +D+F+H + + G +L EGQ V + + + Sbjct: 4 REIGTVKWFNNVRGYGFITR---GEGSEDIFVHYRNIRAEGYRSLAEGQSVEFQLQKGEK 60 Query: 62 NGKYSAENLKLV 73 AE++ L+ Sbjct: 61 G--LQAEDVILL 70 >gi|262067005|ref|ZP_06026617.1| cold-shock domain protein [Fusobacterium periodonticum ATCC 33693] gi|291379265|gb|EFE86783.1| cold-shock domain protein [Fusobacterium periodonticum ATCC 33693] Length = 65 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G++KW+N +KG+GFIT E G DVF H S + G L EGQ V ++ + Sbjct: 2 KGTVKWFNKEKGFGFIT----GEDGKDVFAHFSQIQKEGFKELFEGQEVEFEISEGQKR 56 >gi|88703592|ref|ZP_01101308.1| cold-shock domain family protein [Congregibacter litoralis KT71] gi|88702306|gb|EAQ99409.1| cold-shock domain family protein [Congregibacter litoralis KT71] Length = 70 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFIT E DVF+H ++ G L EG+ V + + Sbjct: 4 RKNGTVKWFNNAKGFGFITGESFD---GDVFVHFRSIQGDGFRTLNEGEEVEFTLTEGPK 60 Query: 62 NGKYSAENLKLV 73 AE++ + Sbjct: 61 G--LQAEDVAKL 70 >gi|283856223|ref|YP_162014.2| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|283775218|gb|AAV88903.2| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 258 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AGL +L EG ++++ + D GK Sbjct: 192 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGLPSLNEGDRLSFEL-EVDRRGK 247 Query: 65 YSAENL 70 Y+A NL Sbjct: 248 YAAVNL 253 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K++N KG+GF+ + + G+DVF+H SAV AGL L EGQ +++ V D G Sbjct: 92 TGVVKFFNSQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGG 146 Query: 64 KYSAENLKL 72 + SA NL + Sbjct: 147 RVSATNLGI 155 >gi|241760852|ref|ZP_04758941.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374471|gb|EER63932.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 257 Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AGL +L EG ++++ + D GK Sbjct: 191 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGLPSLNEGDRLSFEL-EVDRRGK 246 Query: 65 YSAENL 70 Y+A NL Sbjct: 247 YAAVNL 252 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K++N KG+GF+ + + G+DVF+H SAV AGL L EGQ +++ V D G Sbjct: 91 TGVVKFFNSQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLSFTLV--DRGG 145 Query: 64 KYSAENLKL 72 + SA NL + Sbjct: 146 RVSATNLGI 154 >gi|251792619|ref|YP_003007345.1| cold shock domain-containing protein CspD [Aggregatibacter aphrophilus NJ8700] gi|247534012|gb|ACS97258.1| cold shock domain protein CspD [Aggregatibacter aphrophilus NJ8700] Length = 69 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI+ EGS D+F H S + G +L GQ V ++ + D Sbjct: 1 MEVGVVKWFNNAKGFGFISVEGSN---TDIFAHYSVIEMEGYRSLKAGQKVQFEVIHGD- 56 Query: 62 NGKYSAENLKLVP 74 G ++ + + +V Sbjct: 57 KGSHATKIIPVVE 69 >gi|296283311|ref|ZP_06861309.1| cold shock protein [Citromicrobium bathyomarinum JL354] Length = 70 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKG+GFI P+ + D F+H +AV +AG+ L + Q + Y+ Q Sbjct: 1 MAKTGTVKFFNSDKGFGFIQPD---DGSADSFVHITAVQAAGMQGLDKDQRLNYEVEQG- 56 Query: 61 ANGKYSAENLK 71 NGK SA NL Sbjct: 57 RNGKESAVNLS 67 >gi|66359918|ref|XP_627137.1| cold shock RNA binding domain of the OB fold [Cryptosporidium parvum Iowa II] gi|46228824|gb|EAK89694.1| cold shock RNA binding domain of the OB fold [Cryptosporidium parvum Iowa II] Length = 135 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G KW++ KG+GFITP+ + +D+F+H+ + G +L + + V Y+ + D Sbjct: 9 MPLSGVCKWFDSTKGFGFITPD---DGSEDIFVHQQNIKVEGFRSLAQDERVEYEI-ETD 64 Query: 61 ANGKYSAENLK 71 G+ A N+ Sbjct: 65 DKGRRKAVNVS 75 >gi|319935036|ref|ZP_08009479.1| cold shock protein cspC [Coprobacillus sp. 29_1] gi|319810054|gb|EFW06423.1| cold shock protein cspC [Coprobacillus sp. 29_1] Length = 65 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N +KG+GFI G DVF+H S + G +L EG++V ++ Q+D G Sbjct: 2 QGKVKWFNAEKGFGFI----DRGEGKDVFVHYSQIVQDGYKSLNEGEVVEFELYQSD-RG 56 Query: 64 KYSAENLKL 72 + +K+ Sbjct: 57 LQAKNVVKV 65 >gi|87122219|ref|ZP_01078102.1| cold-shock protein CspD [Marinomonas sp. MED121] gi|86162539|gb|EAQ63821.1| cold-shock protein CspD [Marinomonas sp. MED121] Length = 92 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H G++KW+N KGYGFI E E D+F+H S++ G L GQ V++ + Sbjct: 1 MHHGTVKWFNNAKGYGFIVSESFEE---DLFIHYSSILIDGYKTLKAGQSVSF----KTS 53 Query: 62 NGKYSAENLKLVPK 75 GK + ++P+ Sbjct: 54 PGKQGLHAVDIMPE 67 >gi|260583587|ref|ZP_05851335.1| cold shock protein [Granulicatella elegans ATCC 700633] gi|260158213|gb|EEW93281.1| cold shock protein [Granulicatella elegans ATCC 700633] Length = 70 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW++ +KGYGFI+ T++ +D+F+H + + S G L EGQ V ++ Q Sbjct: 1 MKKGIVKWFSNEKGYGFISV---TDTDEDIFVHFTGIISEGFKTLKEGQRVEFEIAQGAH 57 Query: 62 NGKYSAENLKLV 73 A ++ +V Sbjct: 58 G--LQATHVSVV 67 >gi|114704723|ref|ZP_01437631.1| cold shock protein [Fulvimarina pelagi HTCC2506] gi|114539508|gb|EAU42628.1| cold shock protein [Fulvimarina pelagi HTCC2506] Length = 70 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+IK++N KG+GF+TPEG DVFLH SA+ +G+ ++ EG +T+D + Sbjct: 1 MSQTGTIKFFNESKGFGFVTPEG---GSKDVFLHISALERSGISSVQEGDKITFDTEPDP 57 Query: 61 ANGKYSAENLKL 72 A N++L Sbjct: 58 RGKGPKAVNIQL 69 >gi|319403835|emb|CBI77421.1| putative cold shock protein y4cH [Bartonella rochalimae ATCC BAA-1498] gi|319406844|emb|CBI80479.1| putative cold shock protein y4cH [Bartonella sp. 1-1C] Length = 71 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N +KG+GFI P+ D+F+H S V ++GL L + Q V++D + Sbjct: 1 MAQTGEVKFFNNNKGFGFIKPD---NGSTDIFVHISDVQASGLSGLNDAQKVSFDIEPDR 57 Query: 61 ANGKYSAENLKLV 73 A N+ ++ Sbjct: 58 RGKGPKAININVM 70 >gi|257878221|ref|ZP_05657874.1| cold-shock domain-contain protein [Enterococcus faecium 1,230,933] gi|257880999|ref|ZP_05660652.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,502] gi|257884656|ref|ZP_05664309.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,501] gi|257889581|ref|ZP_05669234.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,410] gi|257892479|ref|ZP_05672132.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,408] gi|258616270|ref|ZP_05714040.1| cold-shock domain-contain protein [Enterococcus faecium DO] gi|260559265|ref|ZP_05831451.1| cold-shock domain-containing protein [Enterococcus faecium C68] gi|261207798|ref|ZP_05922483.1| cold-shock domain-containing protein [Enterococcus faecium TC 6] gi|257812449|gb|EEV41207.1| cold-shock domain-contain protein [Enterococcus faecium 1,230,933] gi|257816657|gb|EEV43985.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,502] gi|257820494|gb|EEV47642.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,501] gi|257825941|gb|EEV52567.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,410] gi|257828858|gb|EEV55465.1| cold-shock domain-contain protein [Enterococcus faecium 1,231,408] gi|260075022|gb|EEW63338.1| cold-shock domain-containing protein [Enterococcus faecium C68] gi|260078181|gb|EEW65887.1| cold-shock domain-containing protein [Enterococcus faecium TC 6] Length = 77 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KGYGFI+ + + E +F+H +A+ G L E Q+V ++ ++ + Sbjct: 1 MTTGIVKWFDNKKGYGFISYDDTEE----IFVHFTAIEEEGFKTLEENQVVEFEIIEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGTQAAHVKK 65 >gi|254393855|ref|ZP_05008963.1| cold shock protein B [Streptomyces clavuligerus ATCC 27064] gi|326442535|ref|ZP_08217269.1| putative cold shock protein [Streptomyces clavuligerus ATCC 27064] gi|197707450|gb|EDY53262.1| cold shock protein B [Streptomyces clavuligerus ATCC 27064] Length = 127 Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V G+ +L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPDGVDSLKPGQRVEFGVV-AGQ 54 Query: 62 NGKYSAENLKLVPKSS 77 G + + L P S Sbjct: 55 RGDQALSVVVLDPTPS 70 >gi|67602636|ref|XP_666494.1| glycogen debranching enzyme [Cryptosporidium hominis TU502] gi|54657499|gb|EAL36263.1| glycogen debranching enzyme [Cryptosporidium hominis] Length = 127 Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G KW++ KG+GFITP+ + +D+F+H+ + G +L + + V Y+ + D Sbjct: 1 MPLSGVCKWFDSTKGFGFITPD---DGSEDIFVHQQNIKVEGFRSLAQDERVEYEI-ETD 56 Query: 61 ANGKYSAENLK 71 G+ A N+ Sbjct: 57 DKGRRKAVNVS 67 >gi|330812228|ref|YP_004356690.1| transcriptional regulator, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380336|gb|AEA71686.1| putative transcriptional regulator, Csd family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 70 Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFIT + G+++F+H SA+A G L + Q V+++ + G Sbjct: 6 KGTVKWFNDAKGYGFIT---CGKGGEELFVHYSAIAGEGYKTLKQRQTVSFEVEKGG-KG 61 Query: 64 KYSAEN 69 +A+ Sbjct: 62 MQAAKV 67 >gi|300698107|ref|YP_003748768.1| cold shock/stress protein, member of the Csp-family [Ralstonia solanacearum CFBP2957] gi|299074831|emb|CBJ54398.1| cold shock/stress protein, member of the Csp-family [Ralstonia solanacearum CFBP2957] Length = 67 Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFITP+ G+D+F H S V G +L EGQ V++ Sbjct: 1 METGIVKWFNDSKGFGFITPDA---GGNDLFAHFSEVQGNGFKSLQEGQKVSF-VSGVGQ 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPVA 61 >gi|325295337|ref|YP_004281851.1| cold-shock DNA-binding domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065785|gb|ADY73792.1| cold-shock DNA-binding domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 68 Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KGYGFIT ++G DVF+H + +A G L EG+ V+++ +++ Sbjct: 6 GTVKWFDSKKGYGFIT----ADNGQDVFVHYTGIAGTGFRTLEEGERVSFNITESNKG-- 59 Query: 65 YSAENLKLV 73 A +++ V Sbjct: 60 LKAVDVERV 68 >gi|255073219|ref|XP_002500284.1| cold-shock DNA binding protein [Micromonas sp. RCC299] gi|226515546|gb|ACO61542.1| cold-shock DNA binding protein [Micromonas sp. RCC299] Length = 122 Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ + D++F+H++A+ S G +L E + V + ++ +G Sbjct: 6 TGKVKWFNTQKGFGFITPD---DGSDEIFVHQTAIHSEGFRSLREDEPVEF-VIEKSDDG 61 Query: 64 KYSAENLK 71 + A + Sbjct: 62 RTKAIEVT 69 >gi|9957540|gb|AAG09405.1|AF179614_1 cold shock protein B [Yersinia enterocolitica] Length = 62 Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI+P + DVF+H SA+ L EGQ V + Q Sbjct: 6 TGLVKWFDAGKGFGFISP---ADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKGP 62 >gi|257898616|ref|ZP_05678269.1| cold-shock domain-contain protein [Enterococcus faecium Com15] gi|257836528|gb|EEV61602.1| cold-shock domain-contain protein [Enterococcus faecium Com15] Length = 76 Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KGYGFI+ + + E +F+H +A+ G L E Q+V ++ ++ + Sbjct: 1 MTTGIVKWFDNKKGYGFISYDDTEE----IFVHFTAIEEEGFKTLEENQVVEFEIIEGN- 55 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 56 RGTQAAHVKK 65 >gi|126666188|ref|ZP_01737168.1| Cold-shock DNA-binding protein [Marinobacter sp. ELB17] gi|126629510|gb|EBA00128.1| Cold-shock DNA-binding protein [Marinobacter sp. ELB17] Length = 196 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KG+GFI + SGD++F+H A+ +G L +GQLV + + D Sbjct: 130 EDGTVKWFNVKKGFGFIVRD----SGDEIFVHFRAIRGSGRRVLRQGQLVRFSVIDADKG 185 Query: 63 GKYSAENLKLVPK 75 A+N+ ++ + Sbjct: 186 --LQADNVSILSE 196 >gi|323185910|gb|EFZ71267.1| cold shock-like protein cspI [Escherichia coli 1357] Length = 62 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+NP+KG+GFITP + DVF+H SA+ S LTE Q V + +N G + Sbjct: 1 MKWFNPEKGFGFITP---KDGSKDVFVHFSAIQSNDFKTLTENQEVEFGI-ENGPKGPAA 56 Query: 67 AENLKL 72 + L Sbjct: 57 VHVVAL 62 >gi|319405275|emb|CBI78889.1| putative cold shock protein y4cH [Bartonella sp. AR 15-3] Length = 71 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K++N +KG+GFI P+ D+F+H S V ++GL L + Q V++D + Sbjct: 1 MAQTGEVKFFNNNKGFGFIKPD---NGSTDIFVHISDVQASGLTGLNDAQKVSFDIEPDR 57 Query: 61 ANGKYSAENLKLV 73 A N+ ++ Sbjct: 58 RGKGPKAININVM 70 >gi|15892944|ref|NP_360658.1| cold shock-like protein [Rickettsia conorii str. Malish 7] gi|34581356|ref|ZP_00142836.1| cold shock-like protein [Rickettsia sibirica 246] gi|157828875|ref|YP_001495117.1| cold shock-like protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933601|ref|YP_001650390.1| cold shock protein [Rickettsia rickettsii str. Iowa] gi|229587023|ref|YP_002845524.1| Cold shock-like protein [Rickettsia africae ESF-5] gi|238650987|ref|YP_002916843.1| cold shock protein [Rickettsia peacockii str. Rustic] gi|22256739|sp|Q92GV1|CSPA_RICCN RecName: Full=Cold shock-like protein CspA gi|15620137|gb|AAL03559.1| cold shock-like protein [Rickettsia conorii str. Malish 7] gi|28262741|gb|EAA26245.1| cold shock-like protein [Rickettsia sibirica 246] gi|157801356|gb|ABV76609.1| cold shock-like protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908688|gb|ABY72984.1| cold shock protein [Rickettsia rickettsii str. Iowa] gi|228022073|gb|ACP53781.1| Cold shock-like protein [Rickettsia africae ESF-5] gi|238625085|gb|ACR47791.1| cold shock protein [Rickettsia peacockii str. Rustic] Length = 70 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI + G DVF+H+SAV +AGL +L EGQ V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQD---NGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEE--KQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAVNLRI 69 >gi|2493765|sp|Q45100|CSPE_BACCE RecName: Full=Cold shock-like protein CspE gi|1405478|emb|CAA63611.1| CspE protein [Bacillus cereus] Length = 54 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 M G +KW+N +KG+GFI G DVF+H SA+ G +L EGQ V+++ Sbjct: 1 MTLTGKVKWFNSEKGFGFIE----VADGSDVFVHFSAITGDGFKSLDEGQEVSFEVE 53 >gi|226954179|ref|ZP_03824643.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|294650207|ref|ZP_06727581.1| cold shock family protein [Acinetobacter haemolyticus ATCC 19194] gi|226835048|gb|EEH67431.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|292823913|gb|EFF82742.1| cold shock family protein [Acinetobacter haemolyticus ATCC 19194] Length = 69 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI +SG DVF H S + S G L EGQ V++ Q Sbjct: 6 TGTVKWFNETKGFGFIQ----ADSGQDVFAHFSEIQSNGFKVLHEGQRVSFVLGQGKKGP 61 Query: 64 KYSAENL 70 + ++ ++ Sbjct: 62 QATSISV 68 >gi|29376277|ref|NP_815431.1| cold-shock domain-contain protein [Enterococcus faecalis V583] gi|227518915|ref|ZP_03948964.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis TX0104] gi|227553533|ref|ZP_03983582.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis HH22] gi|229545662|ref|ZP_04434387.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis TX1322] gi|229549854|ref|ZP_04438579.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255972638|ref|ZP_05423224.1| cold shock protein [Enterococcus faecalis T1] gi|256619219|ref|ZP_05476065.1| cold shock protein [Enterococcus faecalis ATCC 4200] gi|256762655|ref|ZP_05503235.1| cold shock protein [Enterococcus faecalis T3] gi|256853281|ref|ZP_05558651.1| cold-shock domain-contain protein [Enterococcus faecalis T8] gi|256959135|ref|ZP_05563306.1| cold shock protein [Enterococcus faecalis DS5] gi|256961771|ref|ZP_05565942.1| cold shock protein [Enterococcus faecalis Merz96] gi|256964969|ref|ZP_05569140.1| cold shock protein [Enterococcus faecalis HIP11704] gi|257079167|ref|ZP_05573528.1| cold shock protein [Enterococcus faecalis JH1] gi|257082397|ref|ZP_05576758.1| cold-shock domain-containing protein [Enterococcus faecalis E1Sol] gi|257085029|ref|ZP_05579390.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1] gi|257087012|ref|ZP_05581373.1| cold shock protein [Enterococcus faecalis D6] gi|257090040|ref|ZP_05584401.1| cold-shock protein [Enterococcus faecalis CH188] gi|257416246|ref|ZP_05593240.1| cold shock protein [Enterococcus faecalis AR01/DG] gi|257419451|ref|ZP_05596445.1| cold-shock protein [Enterococcus faecalis T11] gi|257422457|ref|ZP_05599447.1| cold shock protein [Enterococcus faecalis X98] gi|293383477|ref|ZP_06629390.1| cold-shock domain protein [Enterococcus faecalis R712] gi|293388868|ref|ZP_06633354.1| cold-shock domain protein [Enterococcus faecalis S613] gi|294779384|ref|ZP_06744785.1| major cold shock protein CspA [Enterococcus faecalis PC1.1] gi|300860204|ref|ZP_07106291.1| cold shock protein CspD [Enterococcus faecalis TUSoD Ef11] gi|307269537|ref|ZP_07550876.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|307273064|ref|ZP_07554310.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|307275813|ref|ZP_07556952.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|307289264|ref|ZP_07569220.1| major cold shock protein CspA [Enterococcus faecalis TX0109] gi|307291836|ref|ZP_07571707.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|312901869|ref|ZP_07761134.1| major cold shock protein CspA [Enterococcus faecalis TX0470] gi|312903474|ref|ZP_07762654.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|312907694|ref|ZP_07766685.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512] gi|312910312|ref|ZP_07769159.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516] gi|312951656|ref|ZP_07770551.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|29343740|gb|AAO81501.1| cold-shock domain family protein [Enterococcus faecalis V583] gi|227073604|gb|EEI11567.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis TX0104] gi|227177338|gb|EEI58310.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis HH22] gi|229305123|gb|EEN71119.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|229309230|gb|EEN75217.1| CspC family cold shock transcriptional regulator [Enterococcus faecalis TX1322] gi|255963656|gb|EET96132.1| cold shock protein [Enterococcus faecalis T1] gi|256598746|gb|EEU17922.1| cold shock protein [Enterococcus faecalis ATCC 4200] gi|256683906|gb|EEU23601.1| cold shock protein [Enterococcus faecalis T3] gi|256711740|gb|EEU26778.1| cold-shock domain-contain protein [Enterococcus faecalis T8] gi|256949631|gb|EEU66263.1| cold shock protein [Enterococcus faecalis DS5] gi|256952267|gb|EEU68899.1| cold shock protein [Enterococcus faecalis Merz96] gi|256955465|gb|EEU72097.1| cold shock protein [Enterococcus faecalis HIP11704] gi|256987197|gb|EEU74499.1| cold shock protein [Enterococcus faecalis JH1] gi|256990427|gb|EEU77729.1| cold-shock domain-containing protein [Enterococcus faecalis E1Sol] gi|256993059|gb|EEU80361.1| cold-shock domain-containing protein [Enterococcus faecalis Fly1] gi|256995042|gb|EEU82344.1| cold shock protein [Enterococcus faecalis D6] gi|256998852|gb|EEU85372.1| cold-shock protein [Enterococcus faecalis CH188] gi|257158074|gb|EEU88034.1| cold shock protein [Enterococcus faecalis ARO1/DG] gi|257161279|gb|EEU91239.1| cold-shock protein [Enterococcus faecalis T11] gi|257164281|gb|EEU94241.1| cold shock protein [Enterococcus faecalis X98] gi|291079268|gb|EFE16632.1| cold-shock domain protein [Enterococcus faecalis R712] gi|291081793|gb|EFE18756.1| cold-shock domain protein [Enterococcus faecalis S613] gi|294453513|gb|EFG21914.1| major cold shock protein CspA [Enterococcus faecalis PC1.1] gi|295113106|emb|CBL31743.1| cold-shock DNA-binding protein family [Enterococcus sp. 7L76] gi|300849243|gb|EFK76993.1| cold shock protein CspD [Enterococcus faecalis TUSoD Ef11] gi|306497102|gb|EFM66648.1| major cold shock protein CspA [Enterococcus faecalis TX0411] gi|306499973|gb|EFM69334.1| major cold shock protein CspA [Enterococcus faecalis TX0109] gi|306507505|gb|EFM76636.1| major cold shock protein CspA [Enterococcus faecalis TX2134] gi|306510049|gb|EFM79073.1| major cold shock protein CspA [Enterococcus faecalis TX0855] gi|306514157|gb|EFM82733.1| major cold shock protein CspA [Enterococcus faecalis TX4248] gi|310626722|gb|EFQ10005.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 512] gi|310630373|gb|EFQ13656.1| major cold shock protein CspA [Enterococcus faecalis TX0102] gi|310633350|gb|EFQ16633.1| major cold shock protein CspA [Enterococcus faecalis TX0635] gi|311289585|gb|EFQ68141.1| major cold shock protein CspA [Enterococcus faecalis DAPTO 516] gi|311291062|gb|EFQ69618.1| major cold shock protein CspA [Enterococcus faecalis TX0470] gi|315027882|gb|EFT39814.1| major cold shock protein CspA [Enterococcus faecalis TX2137] gi|315029541|gb|EFT41473.1| major cold shock protein CspA [Enterococcus faecalis TX4000] gi|315032014|gb|EFT43946.1| major cold shock protein CspA [Enterococcus faecalis TX0017] gi|315037138|gb|EFT49070.1| major cold shock protein CspA [Enterococcus faecalis TX0027] gi|315144965|gb|EFT88981.1| major cold shock protein CspA [Enterococcus faecalis TX2141] gi|315147421|gb|EFT91437.1| major cold shock protein CspA [Enterococcus faecalis TX4244] gi|315150754|gb|EFT94770.1| major cold shock protein CspA [Enterococcus faecalis TX0012] gi|315152323|gb|EFT96339.1| major cold shock protein CspA [Enterococcus faecalis TX0031] gi|315156124|gb|EFU00141.1| major cold shock protein CspA [Enterococcus faecalis TX0043] gi|315158234|gb|EFU02251.1| major cold shock protein CspA [Enterococcus faecalis TX0312] gi|315162357|gb|EFU06374.1| major cold shock protein CspA [Enterococcus faecalis TX0645] gi|315163878|gb|EFU07895.1| major cold shock protein CspA [Enterococcus faecalis TX1302] gi|315168876|gb|EFU12893.1| major cold shock protein CspA [Enterococcus faecalis TX1341] gi|315169617|gb|EFU13634.1| major cold shock protein CspA [Enterococcus faecalis TX1342] gi|315172434|gb|EFU16451.1| major cold shock protein CspA [Enterococcus faecalis TX1346] gi|315576063|gb|EFU88254.1| major cold shock protein CspA [Enterococcus faecalis TX0309B] gi|315577830|gb|EFU90021.1| major cold shock protein CspA [Enterococcus faecalis TX0630] gi|315580638|gb|EFU92829.1| major cold shock protein CspA [Enterococcus faecalis TX0309A] gi|323480885|gb|ADX80324.1| cold shock protein CspD [Enterococcus faecalis 62] gi|327535290|gb|AEA94124.1| cold shock protein CspA [Enterococcus faecalis OG1RF] gi|329571878|gb|EGG53556.1| major cold shock protein CspA [Enterococcus faecalis TX1467] Length = 68 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW++ KGYGFI D++F+H +A+ G +L E Q V ++ ++ + Sbjct: 1 MQKGIVKWFDNRKGYGFIV----YNEEDEIFVHFTAIEGDGFKSLDENQSVEFEIMEGN- 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 RGLQAAHVKKI 66 >gi|293603888|ref|ZP_06686303.1| cold shock protein CspA [Achromobacter piechaudii ATCC 43553] gi|311104610|ref|YP_003977463.1| cold-shock DNA-binding domain-containing protein 1 [Achromobacter xylosoxidans A8] gi|292817725|gb|EFF76791.1| cold shock protein CspA [Achromobacter piechaudii ATCC 43553] gi|310759299|gb|ADP14748.1| cold-shock DNA-binding domain protein 1 [Achromobacter xylosoxidans A8] Length = 67 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI PE G D+F H S + S G L E Q V+Y A Sbjct: 1 METGIVKWFNDAKGFGFIMPE---NGGKDLFAHFSEIVSDGHKVLVENQRVSY-VTAQGA 56 Query: 62 NGKYSAE 68 G ++ + Sbjct: 57 KGPHATQ 63 >gi|254459315|ref|ZP_05072736.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales bacterium GD 1] gi|207083928|gb|EDZ61219.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales bacterium GD 1] Length = 72 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFI E G DVF+H V S G +L EGQ VT++ + + Sbjct: 6 NGTVKWFNSEKGFGFIEQE---NGGKDVFVHFRQVNSNGYDRVSLNEGQKVTFEIGEGEK 62 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 63 G--PQAENVT 70 >gi|51473848|ref|YP_067605.1| cold shock protein CspA [Rickettsia typhi str. Wilmington] gi|81826291|sp|Q68W69|CSPA_RICTY RecName: Full=Cold shock-like protein CspA gi|51460160|gb|AAU04123.1| cold shock protein CspA [Rickettsia typhi str. Wilmington] Length = 70 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI + G DVF+H+SA+ +AGL +L E Q V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQD---NGGKDVFVHKSAIEAAGLHSLKERQEVIFDIEE--KQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAINLRV 69 >gi|88860388|ref|ZP_01135026.1| cold-shock DNA-binding domain family protein [Pseudoalteromonas tunicata D2] gi|88817586|gb|EAR27403.1| cold-shock DNA-binding domain family protein [Pseudoalteromonas tunicata D2] Length = 69 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI E +G DVF H + G LTEGQ V + Q G Sbjct: 6 TGTVKWFNEAKGFGFIAQE----NGPDVFAHFGNIVGEGFKTLTEGQKVEFIVTQGQ-KG 60 Query: 64 KYSAENLKL 72 + + + L Sbjct: 61 PQAEKIVAL 69 >gi|297588480|ref|ZP_06947123.1| CspA family cold shock transcriptional regulator [Finegoldia magna ATCC 53516] gi|297573853|gb|EFH92574.1| CspA family cold shock transcriptional regulator [Finegoldia magna ATCC 53516] Length = 67 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + +G++KW+N KG+GFI STE DVF+H +A+ G L E Q V +D Sbjct: 1 MTKGTVKWFNATKGFGFI----STEDHGDVFVHYTALEDNGEYRKLEENQEVEFDIADGP 56 Query: 61 ANGKYSAENLKLV 73 A N+K + Sbjct: 57 RG--LQACNVKKL 67 >gi|33595179|ref|NP_882822.1| cold shock protein [Bordetella parapertussis 12822] gi|33599462|ref|NP_887022.1| cold shock protein [Bordetella bronchiseptica RB50] gi|33565256|emb|CAE36055.1| cold shock protein [Bordetella parapertussis] gi|33567058|emb|CAE30971.1| cold shock protein [Bordetella bronchiseptica RB50] Length = 67 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-D 60 + G +KW+N +KG+GFI PE G D+F H S + G L E Q V+Y VQ Sbjct: 1 MQTGIVKWFNDEKGFGFIMPE---NGGPDLFAHYSEIQGEGHKALVEQQRVSY--VQGHG 55 Query: 61 ANGKYS 66 G + Sbjct: 56 PKGPMA 61 >gi|317406021|gb|EFV86296.1| cold shock-like protein [Achromobacter xylosoxidans C54] Length = 67 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI PE G D+F H S + G L E Q V+Y A Sbjct: 1 METGIVKWFNDAKGFGFIMPE---NGGKDLFAHFSEIVGDGHKALVENQRVSY-VTAQGA 56 Query: 62 NGKYSAE 68 G ++ + Sbjct: 57 KGPHATQ 63 >gi|183602622|ref|ZP_02963987.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019] gi|241190696|ref|YP_002968090.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196102|ref|YP_002969657.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218263|gb|EDT88909.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019] gi|240249088|gb|ACS46028.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250656|gb|ACS47595.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178434|gb|ADC85680.1| Cold shock protein [Bifidobacterium animalis subsp. lactis BB-12] gi|295793685|gb|ADG33220.1| cold-shock DNA-binding domain-containing protein [Bifidobacterium animalis subsp. lactis V9] Length = 70 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG++K++N +GYGFITPE + G DVF+H S++ + G L +G LV YD D Sbjct: 1 MPRGTVKFFNVGRGYGFITPE---DGGADVFVHYSSIEAEGFKALRQGDLVEYDSKPTD- 56 Query: 62 NGKYSAENLKL 72 G+ + +K+ Sbjct: 57 KGELATRVVKI 67 >gi|302873232|ref|YP_003841865.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|307688601|ref|ZP_07631047.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|302576089|gb|ADL50101.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans 743B] Length = 65 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KGYGFIT ++ G ++F+H S ++ G +L EG V+++ + N Sbjct: 2 QGNVKWFNGLKGYGFIT----SDDGSEIFVHYSGISGEGYKSLEEGDKVSFETAE--HNN 55 Query: 64 KYSAENLKLV 73 K A N+K + Sbjct: 56 KLQAVNVKKI 65 >gi|157826078|ref|YP_001493798.1| cold shock-like protein [Rickettsia akari str. Hartford] gi|157800036|gb|ABV75290.1| cold shock-like protein [Rickettsia akari str. Hartford] Length = 70 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI E G DVF+H+SAV + GL +L EGQ V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQE---NGGKDVFVHKSAVEATGLHSLEEGQDVIFDLEE--KQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAVNLRI 69 >gi|253581950|ref|ZP_04859174.1| cold shock protein CspC [Fusobacterium varium ATCC 27725] gi|251836299|gb|EES64836.1| cold shock protein CspC [Fusobacterium varium ATCC 27725] Length = 65 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N DKG+GFIT E G +VF H S + G L E + V Y+ Q Sbjct: 2 KGTVKWFNQDKGFGFIT----GEDGKEVFAHYSQIQKDGFKTLEENEEVIYEVTQGQKG- 56 Query: 64 KYSAENLK 71 A N+K Sbjct: 57 -PQASNIK 63 >gi|227551399|ref|ZP_03981448.1| CspC family cold shock transcriptional regulator [Enterococcus faecium TX1330] gi|293570497|ref|ZP_06681552.1| cold-shock protein [Enterococcus faecium E980] gi|227179518|gb|EEI60490.1| CspC family cold shock transcriptional regulator [Enterococcus faecium TX1330] gi|291609443|gb|EFF38710.1| cold-shock protein [Enterococcus faecium E980] Length = 79 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KGYGFI+ + + E +F+H +A+ G L E Q+V ++ ++ + Sbjct: 4 LTTGIVKWFDNKKGYGFISYDDTEE----IFVHFTAIEEEGFKTLEENQVVEFEIIEGN- 58 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 59 RGTQAAHVKK 68 >gi|103487825|ref|YP_617386.1| cold-shock DNA-binding domain-containing protein [Sphingopyxis alaskensis RB2256] gi|98977902|gb|ABF54053.1| cold-shock DNA-binding protein family [Sphingopyxis alaskensis RB2256] Length = 249 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AG+ L EG V +D +D GK Sbjct: 183 GTVKFFNTTKGFGFIARD---DGQADAFVHISAVQRAGMAGLEEGDRVAFDIEVDD-RGK 238 Query: 65 YSAENLK 71 ++A NL+ Sbjct: 239 FAAVNLQ 245 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++NP KG+GF+ + + G+DVF+H SAV AGL L GQ + + V+ NG Sbjct: 85 QGTVKFFNPSKGFGFVARD---DGGEDVFVHISAVEQAGLQGLASGQPLAFTLVE--RNG 139 Query: 64 KYSAENLKL 72 K SA +LK+ Sbjct: 140 KVSAIDLKI 148 >gi|322435626|ref|YP_004217838.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] gi|321163353|gb|ADW69058.1| cold-shock DNA-binding domain protein [Acidobacterium sp. MP5ACTX9] Length = 71 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%) Query: 1 MVH-RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M H +G +KW+N KG+GF+ E DVF H S++ + G +L EG V YD + Sbjct: 1 MAHFKGEVKWFNNAKGFGFL----GREGEPDVFCHYSSIQTDGYKSLKEGDKVEYDVILG 56 Query: 60 DANGKYSAENLKL 72 D G + + +++ Sbjct: 57 D-KGLQADQVVRV 68 >gi|292493470|ref|YP_003528909.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus Nc4] gi|291582065|gb|ADE16522.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus Nc4] Length = 69 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KGYGFI E SG D+F+H ++ G L EGQ V++ VQ Sbjct: 5 QTGTVKWFNDSKGYGFIQRE----SGGDLFVHYRSIVGQGHRTLKEGQQVSFVEVQGHKG 60 Query: 63 GKYSAENLKLV 73 A+N+ ++ Sbjct: 61 --PQADNVIVL 69 >gi|71278873|ref|YP_267468.1| cold shock DNA-binding domain-containing protein [Colwellia psychrerythraea 34H] gi|71144613|gb|AAZ25086.1| cold-shock DNA-binding domain family protein [Colwellia psychrerythraea 34H] Length = 68 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + +G +KW+N DKG+GFITPE + D+F+H S + S G L +GQ V Y+ Q Sbjct: 1 MSKGIVKWFNSDKGFGFITPE---DGSKDLFVHHSEIQSGGEYATLADGQTVEYEVGQGQ 57 Query: 61 ANG 63 Sbjct: 58 KGP 60 >gi|315122408|ref|YP_004062897.1| cold shock protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495810|gb|ADR52409.1| cold shock protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 74 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 44/70 (62%), Positives = 55/70 (78%), Gaps = 2/70 (2%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RGSIKWY+ +KGYGFIT ++ DVFLHRSAV SAGL ++ EGQ V YD+V+N+ G Sbjct: 7 RGSIKWYDANKGYGFIT--SASAGEKDVFLHRSAVMSAGLPDVREGQEVIYDFVENETTG 64 Query: 64 KYSAENLKLV 73 K+SAEN+KLV Sbjct: 65 KFSAENIKLV 74 >gi|111224718|ref|YP_715512.1| major cold shock protein/transcription antiterminator [Frankia alni ACN14a] gi|111152250|emb|CAJ63981.1| major cold shock protein 7.4, transcription antiterminator of hns, ssDNA-binding property [Frankia alni ACN14a] Length = 63 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 4/63 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +KG+GFI+ +G G DVF+H S++ S G +L EGQ V++D Q G + Sbjct: 1 MKWFNAEKGFGFISVDG---GGGDVFVHFSSIVSEGFKSLDEGQRVSFDIEQGQ-KGLQA 56 Query: 67 AEN 69 A+ Sbjct: 57 AKV 59 >gi|67458654|ref|YP_246278.1| cold shock-like protein [Rickettsia felis URRWXCal2] gi|75536880|sp|Q4UMU5|CSPA_RICFE RecName: Full=Cold shock-like protein CspA gi|67004187|gb|AAY61113.1| Cold shock-like protein [Rickettsia felis URRWXCal2] Length = 70 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI E G DVF+H+SAV +AGL +L EGQ V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQE---NGGKDVFVHKSAVDAAGLHSLEEGQYVIFDLEE--KQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAVNLRI 69 >gi|332187878|ref|ZP_08389611.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17] gi|332012039|gb|EGI54111.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17] Length = 284 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFI + + D F+H SAV AG+ +L EG + ++ + D G Sbjct: 218 TGTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMGSLNEGDRLQFEI-EVDRRG 273 Query: 64 KYSAENLK 71 KY+A NL+ Sbjct: 274 KYAAVNLQ 281 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K++N KG+GF+ + + G+DVF+H SAV AGL L EGQ + + V D G Sbjct: 105 TGVVKFFNAQKGFGFVVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLGFTLV--DRGG 159 Query: 64 KYSAENLKL 72 + SA LK+ Sbjct: 160 RISATELKI 168 >gi|170746594|ref|YP_001752854.1| cold-shock DNA-binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170653116|gb|ACB22171.1| cold-shock DNA-binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 259 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KWY+P KG+GF++ + G DVF+HRSA++ AGL +L EGQ VT V+ + Sbjct: 195 GTVKWYDPAKGFGFVSV---NDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGRE 251 Query: 65 YSAENLK 71 + N++ Sbjct: 252 AQSINVE 258 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ + D FLH AV +AG +L G +T Q + Sbjct: 70 TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHDDLMPGTRLTVTTAQGQKGPQV 126 Query: 66 SAE 68 ++ Sbjct: 127 TSV 129 >gi|290959486|ref|YP_003490668.1| cold shock protein B [Streptomyces scabiei 87.22] gi|260649012|emb|CBG72126.1| putative cold shock protein B [Streptomyces scabiei 87.22] Length = 127 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVDTLKPGQKVEFGVVAGQR 55 Query: 62 NGKYSAENLKLVPKS 76 A ++ ++ + Sbjct: 56 G--DQALSVTILEPA 68 >gi|239946656|ref|ZP_04698409.1| conserved domain protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239920932|gb|EER20956.1| conserved domain protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 70 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI E G DVF+H+SAV +AGL +L EGQ V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQE---NGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEE--KQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAVNLRI 69 >gi|294470716|gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum] Length = 295 Score = 86.9 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + W++ KGYGFITP+ + GD++F+H+S++ S G +LT G+ V Y ++G Sbjct: 12 TGKVNWFSDGKGYGFITPD---DGGDELFVHQSSIVSDGFRSLTVGESVEYAITLG-SDG 67 Query: 64 KYSAENLK 71 K A + Sbjct: 68 KTKAVEVT 75 >gi|254786003|ref|YP_003073432.1| cold-shock DNA-binding domain-containing protein [Teredinibacter turnerae T7901] gi|237684504|gb|ACR11768.1| cold-shock DNA-binding domain protein [Teredinibacter turnerae T7901] Length = 72 Score = 86.9 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 7/71 (9%) Query: 5 GSIKWYNPD--KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N +GYGFIT E +D+F+H + G +LTEGQ V ++ + + Sbjct: 7 GTVKWFNNASARGYGFITR---GEESEDIFVHYRNIRGEGYRSLTEGQKVEFELQKGEKG 63 Query: 63 GKYSAENLKLV 73 AE++ V Sbjct: 64 --LQAEDVSAV 72 >gi|300022389|ref|YP_003755000.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524210|gb|ADJ22679.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 71 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K+YN KGYGFI P+ G+DVF+H +AV +G+ L EG ++++ + Sbjct: 1 MRQTGTVKFYNSQKGYGFIKPDT---GGNDVFVHVTAVERSGIGELNEGMRISFETEPDK 57 Query: 61 ANGKYSAENLK 71 A +L+ Sbjct: 58 RGKGPKAVDLQ 68 >gi|71278479|ref|YP_267487.1| cold shock DNA-binding domain-containing protein [Colwellia psychrerythraea 34H] gi|71144219|gb|AAZ24692.1| cold-shock DNA-binding domain family protein [Colwellia psychrerythraea 34H] Length = 69 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K++N KG+GFI E +G DVF+H SA++ G L +GQ VT+ Q Sbjct: 6 TGKVKFFNETKGFGFIEQE----NGPDVFVHFSAISGDGFRTLADGQAVTFTVKQGQKGP 61 Query: 64 KYSAENL 70 + AEN+ Sbjct: 62 E--AENV 66 >gi|289566250|ref|ZP_06446682.1| cold shock protein CspB [Enterococcus faecium D344SRF] gi|293553482|ref|ZP_06674110.1| cold-shock protein [Enterococcus faecium E1039] gi|293559343|ref|ZP_06675885.1| cold shock protein [Enterococcus faecium E1162] gi|293569841|ref|ZP_06680928.1| cold-shock protein [Enterococcus faecium E1071] gi|294616589|ref|ZP_06696365.1| cold-shock protein [Enterococcus faecium E1636] gi|294617895|ref|ZP_06697504.1| cold shock protein [Enterococcus faecium E1679] gi|294622251|ref|ZP_06701305.1| cold shock protein [Enterococcus faecium U0317] gi|314939747|ref|ZP_07846969.1| putative major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|314941752|ref|ZP_07848629.1| putative major cold shock protein CspA [Enterococcus faecium TX0133C] gi|314948297|ref|ZP_07851689.1| putative major cold shock protein CspA [Enterococcus faecium TX0082] gi|314952385|ref|ZP_07855392.1| putative major cold shock protein CspA [Enterococcus faecium TX0133A] gi|314991996|ref|ZP_07857449.1| putative major cold shock protein CspA [Enterococcus faecium TX0133B] gi|314995706|ref|ZP_07860796.1| putative major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|289161957|gb|EFD09825.1| cold shock protein CspB [Enterococcus faecium D344SRF] gi|291587589|gb|EFF19466.1| cold-shock protein [Enterococcus faecium E1071] gi|291590539|gb|EFF22272.1| cold-shock protein [Enterococcus faecium E1636] gi|291595840|gb|EFF27124.1| cold shock protein [Enterococcus faecium E1679] gi|291598222|gb|EFF29317.1| cold shock protein [Enterococcus faecium U0317] gi|291602359|gb|EFF32583.1| cold-shock protein [Enterococcus faecium E1039] gi|291606707|gb|EFF36099.1| cold shock protein [Enterococcus faecium E1162] gi|313590097|gb|EFR68942.1| putative major cold shock protein CspA [Enterococcus faecium TX0133a01] gi|313593431|gb|EFR72276.1| putative major cold shock protein CspA [Enterococcus faecium TX0133B] gi|313595502|gb|EFR74347.1| putative major cold shock protein CspA [Enterococcus faecium TX0133A] gi|313599430|gb|EFR78273.1| putative major cold shock protein CspA [Enterococcus faecium TX0133C] gi|313640976|gb|EFS05556.1| putative major cold shock protein CspA [Enterococcus faecium TX0133a04] gi|313645278|gb|EFS09858.1| putative major cold shock protein CspA [Enterococcus faecium TX0082] Length = 80 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KGYGFI+ + + E +F+H +A+ G L E Q+V ++ ++ + Sbjct: 4 LTTGIVKWFDNKKGYGFISYDDTEE----IFVHFTAIEEEGFKTLEENQVVEFEIIEGN- 58 Query: 62 NGKYSAENLK 71 G +A K Sbjct: 59 RGTQAAHVKK 68 >gi|320009321|gb|ADW04171.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] Length = 127 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGADVFVH-SSVLPAGVEALKPGQRVEFGVV-AGQ 54 Query: 62 NGKYSAENLKLVPKSS 77 G + + L P S Sbjct: 55 RGDQALSVVILDPTPS 70 >gi|226359632|ref|YP_002777410.1| cold shock protein [Rhodococcus opacus B4] gi|226238117|dbj|BAH48465.1| cold shock protein [Rhodococcus opacus B4] Length = 81 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+++W+N D+G+GF+ P + DDVF+H S +A G L EGQ V++ + D Sbjct: 15 LRTGTVRWFNADQGFGFLAP---ADGSDDVFVHVSEIAGDGHRILVEGQRVSFTVCRTDT 71 Query: 62 NGKYSAENLKL 72 A ++++ Sbjct: 72 G--NQARDVRI 80 >gi|157964818|ref|YP_001499642.1| cold shock-like protein [Rickettsia massiliae MTU5] gi|157844594|gb|ABV85095.1| Cold shock-like protein [Rickettsia massiliae MTU5] Length = 80 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI E G DVF+H+SAV +AGL +L EGQ V +D + GK Sbjct: 17 GKVKWYNSTKNFGFIEQE---NGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEE--KQGK 71 Query: 65 YSAENLKL 72 A NL++ Sbjct: 72 AYAVNLRM 79 >gi|85709247|ref|ZP_01040312.1| Cold shock protein [Erythrobacter sp. NAP1] gi|85687957|gb|EAQ27961.1| Cold shock protein [Erythrobacter sp. NAP1] Length = 71 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 GS+K++N DKGYGFI P+ + D F+H SAV +AG+ L + Q + Y+ V+ N Sbjct: 4 KTGSVKFFNADKGYGFIQPD---DGSADSFVHISAVQAAGMQTLDKEQRLNYE-VETGRN 59 Query: 63 GKYSAENLK 71 GK SA NL Sbjct: 60 GKESAVNLS 68 >gi|257469672|ref|ZP_05633764.1| cold shock protein [Fusobacterium ulcerans ATCC 49185] gi|317063905|ref|ZP_07928390.1| cold shock protein [Fusobacterium ulcerans ATCC 49185] gi|313689581|gb|EFS26416.1| cold shock protein [Fusobacterium ulcerans ATCC 49185] Length = 65 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N DKG+GFIT E G +VF H S + G L E + V Y+ Q Sbjct: 2 KGTVKWFNQDKGFGFIT----GEDGKEVFAHYSQIQKDGFKTLAENEEVVYEVTQGQKG- 56 Query: 64 KYSAENLK 71 A N+K Sbjct: 57 -PQASNIK 63 >gi|46203051|ref|ZP_00052170.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 263 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 3/67 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KWY+P KG+GF++ + G DVF+HRSA++ AGL +L EGQ VT + V Sbjct: 198 TGTVKWYDPAKGFGFVSV---NDGGKDVFVHRSALSRAGLDSLAEGQQVTLNVVDGQKGR 254 Query: 64 KYSAENL 70 + + N+ Sbjct: 255 EAQSINV 261 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ + D FLH AV +AG +L G +T Q + Sbjct: 70 TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 126 Query: 66 SAE 68 ++ Sbjct: 127 TSV 129 >gi|329123451|ref|ZP_08252015.1| cold shock domain protein CspD [Haemophilus aegyptius ATCC 11116] gi|327471033|gb|EGF16488.1| cold shock domain protein CspD [Haemophilus aegyptius ATCC 11116] Length = 72 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI+ EG D+F H S + G +L GQ V ++ + D Sbjct: 1 MEIGIVKWFNNAKGFGFISAEGVD---ADIFAHYSVIEMDGYRSLKVGQKVQFEVLHGDK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|321468514|gb|EFX79498.1| hypothetical protein DAPPUDRAFT_52316 [Daphnia pulex] Length = 147 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G KW+N KG+GFITP+ + DVF+H+S + G NL EG+ V + D Sbjct: 1 GRCKWFNVTKGWGFITPD---DGSPDVFVHQSVIRMNGFRNLAEGEEVEMETKDADKG 55 >gi|188576172|ref|YP_001913101.1| major cold shock protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520624|gb|ACD58569.1| major cold shock protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 61 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ Sbjct: 1 MKWFNDAKGFGFITPE----SGPDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQKG--MQ 54 Query: 67 AENLKLV 73 A+ ++ V Sbjct: 55 ADQVQAV 61 >gi|167855568|ref|ZP_02478329.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus parasuis 29755] gi|219870615|ref|YP_002474990.1| cold shock-like protein CspD [Haemophilus parasuis SH0165] gi|167853314|gb|EDS24567.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus parasuis 29755] gi|219690819|gb|ACL32042.1| cold shock-like protein CspD [Haemophilus parasuis SH0165] Length = 69 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + D+F H S + G +L GQ V +++ D Sbjct: 1 MEVGIVKWFNNAKGFGFITSDSYE---GDIFAHFSVIEGEGYRSLKMGQKVHFEFTHGDK 57 Query: 62 NGKYSAENLKLVP 74 A +++VP Sbjct: 58 G----ASAVRIVP 66 >gi|170053777|ref|XP_001862831.1| RNA-binding protein lin-28 [Culex quinquefasciatus] gi|167874140|gb|EDS37523.1| RNA-binding protein lin-28 [Culex quinquefasciatus] Length = 181 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G KW+N KG+GFITP+ + G DVF+H+S + G +L + + V ++ D Sbjct: 26 GHCKWFNVIKGWGFITPD---DGGQDVFVHQSVLQMDGFRSLGQNEPVEFECKLTDKG 80 >gi|18398546|ref|NP_565427.1| cold-shock DNA-binding family protein [Arabidopsis thaliana] gi|14334920|gb|AAK59638.1| putative glycine-rich, zinc-finger DNA-binding protein [Arabidopsis thaliana] gi|17104541|gb|AAL34159.1| putative glycine-rich, zinc-finger DNA-binding protein [Arabidopsis thaliana] gi|148726892|dbj|BAF63841.1| cold shock domain protein 3 [Arabidopsis thaliana] gi|330251603|gb|AEC06697.1| cold shock domain protein 3 [Arabidopsis thaliana] Length = 301 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G + W++ KGYGFITP+ + G+++F+H+S++ S G +LT G+ V Y+ ++GK Sbjct: 13 GKVSWFSDGKGYGFITPD---DGGEELFVHQSSIVSDGFRSLTLGESVEYEIALG-SDGK 68 Query: 65 YSAENLK 71 A + Sbjct: 69 TKAIEVT 75 >gi|283768673|ref|ZP_06341585.1| cold-shock DNA-binding domain protein [Bulleidia extructa W1219] gi|283105065|gb|EFC06437.1| cold-shock DNA-binding domain protein [Bulleidia extructa W1219] Length = 70 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 8/75 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA---SAGLFNLTEGQLVTYDYVQ 58 + G +KW++ KGYGFIT + + G D+F+H SA+ G L EGQ V ++ + Sbjct: 1 MLTGKVKWFDDQKGYGFITSD---DEGKDIFVHFSAIKEGDENGHKTLKEGQAVQFEVEE 57 Query: 59 NDANGKYSAENLKLV 73 + A N++ + Sbjct: 58 GEKG--PHASNVEKL 70 >gi|297568405|ref|YP_003689749.1| cold-shock DNA-binding domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924320|gb|ADH85130.1| cold-shock DNA-binding domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 70 Score = 86.5 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI + + DVF+H + G +L +GQ V++ V+ Sbjct: 6 NGRVKWFNAPKGFGFIERDNDS----DVFVHYRGIRGEGYRSLQDGQSVSFAVVETPKG- 60 Query: 64 KYSAENLKLV 73 AE+++++ Sbjct: 61 -LQAEDVEVI 69 >gi|307107809|gb|EFN56051.1| hypothetical protein CHLNCDRAFT_145510 [Chlorella variabilis] Length = 139 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 9/68 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW GYGFITP+ G+D+F+H++A+ S G +L EG+ V + +V+ +G Sbjct: 7 TGTVKW-----GYGFITPDS---GGEDLFVHQTAIVSEGFRSLREGEPVEF-FVETSDDG 57 Query: 64 KYSAENLK 71 + A N+ Sbjct: 58 RQKAVNVT 65 >gi|21222717|ref|NP_628496.1| cold shock protein B [Streptomyces coelicolor A3(2)] gi|256786208|ref|ZP_05524639.1| cold shock protein B [Streptomyces lividans TK24] gi|289770100|ref|ZP_06529478.1| cold shock protein B [Streptomyces lividans TK24] gi|8249978|emb|CAB93399.1| cold shock protein B [Streptomyces coelicolor A3(2)] gi|289700299|gb|EFD67728.1| cold shock protein B [Streptomyces lividans TK24] Length = 127 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ +L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVESLKPGQRVEFGVVAGQR 55 Query: 62 NGKYSAENLKLVPKS 76 A +L L+ + Sbjct: 56 G--DQALSLALLDPA 68 >gi|163783680|ref|ZP_02178668.1| cold shock protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881085|gb|EDP74601.1| cold shock protein [Hydrogenivirga sp. 128-5-R1-1] Length = 65 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 5/67 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ DKGYGFIT + ++ DVF+H +A+ G L +GQ V ++ ++ + Sbjct: 1 VKWFSKDKGYGFITRD---DNEGDVFVHFTAIQKEGFKTLEQGQRVEFEIEEDAKGPR-- 55 Query: 67 AENLKLV 73 A+N+ ++ Sbjct: 56 AKNVVIL 62 >gi|148555809|ref|YP_001263391.1| cold-shock DNA-binding protein family protein [Sphingomonas wittichii RW1] gi|148500999|gb|ABQ69253.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1] Length = 288 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K++N KG+GFI + + G+DVF+H SAV AGL L EGQ + + V D G Sbjct: 126 KGVVKFFNGQKGFGFIVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLEFTLV--DRGG 180 Query: 64 KYSAENLKL 72 + SA +LK+ Sbjct: 181 RVSATDLKI 189 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AG+ NL EG + ++ + D GK Sbjct: 223 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMTNLNEGDRLEFEL-EVDRRGK 278 Query: 65 YSAENLKLV 73 Y+A NL + Sbjct: 279 YAAVNLTPL 287 >gi|296273539|ref|YP_003656170.1| cold-shock DNA-binding domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097713|gb|ADG93663.1| cold-shock DNA-binding domain protein [Arcobacter nitrofigilis DSM 7299] Length = 72 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDA 61 GS+KW+N +KG+GFI E G DVF+H + S G +L +GQ VT++ Q D Sbjct: 6 NGSVKWFNSEKGFGFIEQE---NGGKDVFVHYRNINSTGYGRVSLEDGQKVTFEVAQGDK 62 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 63 G--LQAENVT 70 >gi|332288226|ref|YP_004419078.1| stationary phase/starvation inducible regulatory protein CspD [Gallibacterium anatis UMN179] gi|330431122|gb|AEC16181.1| stationary phase/starvation inducible regulatory protein CspD [Gallibacterium anatis UMN179] Length = 69 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI+ EG D+F H S + G +L GQ V ++ V D Sbjct: 1 MEIGVVKWFNNAKGFGFISVEGHE---GDIFAHYSVIEMDGYRSLKAGQKVQFEAVHGD- 56 Query: 62 NGKYSAENLKLVP 74 G ++ + + +V Sbjct: 57 KGSHATKIVPIVE 69 >gi|57339760|gb|AAW49867.1| hypothetical protein FTT0391 [synthetic construct] Length = 102 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFITPE G DVF+H S + L EGQ VT++ Q G Sbjct: 32 QGTVKFFNEQKGFGFITPE---NGGKDVFVHISKLNGE---TLAEGQQVTFE-TQEGRKG 84 Query: 64 KYSAENLKLV 73 A N++++ Sbjct: 85 PE-AINIEVL 93 >gi|302552283|ref|ZP_07304625.1| cold shock protein B [Streptomyces viridochromogenes DSM 40736] gi|302469901|gb|EFL32994.1| cold shock protein B [Streptomyces viridochromogenes DSM 40736] Length = 127 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVETLKPGQRVEFGVVAGQR 55 Query: 62 NGKYSAENLKLVPKS 76 A +L ++ + Sbjct: 56 G--DQALSLAILDPT 68 >gi|169824501|ref|YP_001692112.1| cold shock protein [Finegoldia magna ATCC 29328] gi|302380494|ref|ZP_07268959.1| cold shock protein CspD [Finegoldia magna ACS-171-V-Col3] gi|303233739|ref|ZP_07320393.1| cold shock protein CspD [Finegoldia magna BVS033A4] gi|167831306|dbj|BAG08222.1| cold shock protein [Finegoldia magna ATCC 29328] gi|302311437|gb|EFK93453.1| cold shock protein CspD [Finegoldia magna ACS-171-V-Col3] gi|302495173|gb|EFL54925.1| cold shock protein CspD [Finegoldia magna BVS033A4] Length = 67 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + +G +KW+N KG+GFI STE DVF+H +A+ G L E Q V ++ + Sbjct: 1 MTKGKVKWFNATKGFGFI----STEDQGDVFVHYTAIEDNGEYRKLEENQEVEFEISEGP 56 Query: 61 ANGKYSAENLKLV 73 A N+K + Sbjct: 57 KG--LQACNVKKL 67 >gi|153811452|ref|ZP_01964120.1| hypothetical protein RUMOBE_01844 [Ruminococcus obeum ATCC 29174] gi|149832579|gb|EDM87663.1| hypothetical protein RUMOBE_01844 [Ruminococcus obeum ATCC 29174] gi|291546074|emb|CBL19182.1| cold-shock DNA-binding protein family [Ruminococcus sp. SR1/5] Length = 75 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW++ KGYGFIT E G D F H S + G L+ GQ V ++ DANG Sbjct: 6 QGTVKWFSAQKGYGFIT----GEDGIDYFAHFSEIQMDGYRKLSGGQPVLFEAG-TDANG 60 Query: 64 KYSAENLKLVPKSSN 78 + A+N+ ++ Sbjct: 61 RSLAKNISPADPNAE 75 >gi|88703593|ref|ZP_01101309.1| cold-shock domain family protein [Congregibacter litoralis KT71] gi|88702307|gb|EAQ99410.1| cold-shock domain family protein [Congregibacter litoralis KT71] Length = 189 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N KG+GFI E +GD++F+H ++ G +L +G V Y V D Sbjct: 123 AEEGTVKWFNGTKGFGFIIRE----NGDEIFVHHRSIIGEGRRSLRDGAPVRYRVVTTDK 178 Query: 62 NGKYSAENLKLV 73 AE ++ + Sbjct: 179 G--PQAEEVEAL 188 >gi|85715709|ref|ZP_01046688.1| cold shock protein [Nitrobacter sp. Nb-311A] gi|85697362|gb|EAQ35241.1| cold shock protein [Nitrobacter sp. Nb-311A] Length = 62 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 5/66 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N K YGFI P+ G VF+H SAV AGL +L EG V+Y+ V N GK S Sbjct: 1 MKWFNGQKSYGFIAPD---NGGKVVFVHISAVEKAGLGSLNEGDKVSYEVVVN--RGKES 55 Query: 67 AENLKL 72 AENL++ Sbjct: 56 AENLRV 61 >gi|323339484|ref|ZP_08079763.1| cold-shock family protein [Lactobacillus ruminis ATCC 25644] gi|323093098|gb|EFZ35691.1| cold-shock family protein [Lactobacillus ruminis ATCC 25644] Length = 69 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ +++ KGYGFITP+ E +DVF+H SA+ +G L EGQ V + V+ Sbjct: 1 MLKGTVHFFDKKKGYGFITPD---EGNEDVFVHFSALVGSGFKTLEEGQRVEFCEVEGKK 57 Query: 62 NGKYSAENLKLV 73 + + A + ++ Sbjct: 58 S--FQAAMVTVI 67 >gi|167041377|gb|ABZ06130.1| putative cold-shock DNA-binding domain protein [uncultured marine microorganism HF4000_005K23] Length = 445 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KGYGFI EG D+F+H SAV +AGL L EG+ +T++ ++ Sbjct: 368 NGEVKWFNGAKGYGFIKREGEE---KDIFVHSSAVQNAGLKYLKEGEQLTFEVEYSNKG- 423 Query: 64 KYSAENLK 71 SA NL+ Sbjct: 424 -PSAINLQ 430 >gi|163802257|ref|ZP_02196152.1| transcription elongation factor GreB [Vibrio sp. AND4] gi|159174062|gb|EDP58872.1| transcription elongation factor GreB [Vibrio sp. AND4] Length = 69 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ E SGDD+F+H ++ G L EG+ V++ Sbjct: 6 TGTVKWFNEAKGFGFISQE----SGDDLFVHFRSILGDGFKKLVEGEKVSFTVGHGPKG- 60 Query: 64 KYSAENLKLV 73 AEN+ + Sbjct: 61 -LQAENVTAL 69 >gi|330813537|ref|YP_004357776.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter sp. IMCC9063] gi|327486632|gb|AEA81037.1| cold shock DNA-binding domain protein [Candidatus Pelagibacter sp. IMCC9063] Length = 68 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N KG+GFI E + DVF+H SAV +AGL L EG + +D V++ Sbjct: 1 MSLKGKVKWFNEKKGFGFIERE---DGKKDVFVHISAVQAAGLDYLDEGSSINFD-VEDG 56 Query: 61 ANGKYSAENLK 71 G SA NLK Sbjct: 57 PKGP-SAVNLK 66 >gi|170740501|ref|YP_001769156.1| cold-shock DNA-binding domain-containing protein [Methylobacterium sp. 4-46] gi|168194775|gb|ACA16722.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46] Length = 242 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KWY+P KG+GF++ + G DVF+HRSA+A AGL +L EGQ VT V+ + Sbjct: 178 GTVKWYDPAKGFGFVSV---KDGGKDVFVHRSALARAGLDSLAEGQQVTMGVVEGQKGRE 234 Query: 65 YSAENL 70 + + Sbjct: 235 AQSITV 240 Score = 62.7 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ + D FLH AV +AG +L G +T Q Sbjct: 65 TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHADLLPGTRLTVQTAQGQKG--P 119 Query: 66 SAENLKLVPKSS 77 N+ V S+ Sbjct: 120 QVTNITSVDTST 131 >gi|33591645|ref|NP_879289.1| cold shock protein [Bordetella pertussis Tohama I] gi|33571288|emb|CAE44757.1| cold shock protein [Bordetella pertussis Tohama I] gi|332381065|gb|AEE65912.1| cold shock protein [Bordetella pertussis CS] Length = 67 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI PE G D+F H S + G L E Q V+Y + Sbjct: 1 MQTGIVKWFNDEKGFGFIMPE---NGGPDLFAHYSEIQGEGHKVLVEQQRVSY-VPGHGP 56 Query: 62 NGKYS 66 G + Sbjct: 57 KGPMA 61 >gi|126656639|ref|ZP_01727853.1| cold shock protein [Cyanothece sp. CCY0110] gi|126621859|gb|EAZ92567.1| cold shock protein [Cyanothece sp. CCY0110] Length = 64 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW++ KGYGFI P + GDD+F+H S V S +L EGQ V Y+ Q Sbjct: 1 MAQGQVKWFDVQKGYGFIAP---QDGGDDLFVHYSEVQS---KSLEEGQTVEYEVGQGRK 54 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 55 G--PCAVNVR 62 >gi|456238|emb|CAA51842.1| cold shock protein [Bacillus subtilis] gi|740007|prf||2004289D cold shock protein Length = 57 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +KG+G I EG DDVF+H SA+ G L E Q V+++ V+ + G + Sbjct: 1 VKWFNSEKGFGLIEVEGQ----DDVFVHFSAIQGEGFKTLEESQAVSFEIVEGN-RGPQA 55 Query: 67 AE 68 A Sbjct: 56 AN 57 >gi|297200512|ref|ZP_06917909.1| cold shock protein B [Streptomyces sviceus ATCC 29083] gi|197709638|gb|EDY53672.1| cold shock protein B [Streptomyces sviceus ATCC 29083] Length = 127 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVETLKPGQRVEFGVVAGQR 55 Query: 62 NGKYSAENLKLVPKS 76 A ++ ++ + Sbjct: 56 G--DQALSVAILDPT 68 >gi|162147665|ref|YP_001602126.1| cold shock-like protein cspE [Gluconacetobacter diazotrophicus PAl 5] gi|161786242|emb|CAP55824.1| Cold shock-like protein cspE [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KWYN KG+GFITPE G D+F+H SA+ +GL LTEGQ VQ G Sbjct: 162 RGVVKWYNATKGFGFITPES---GGKDIFVHASALERSGLTGLTEGQTANVQVVQGQ-KG 217 Query: 64 KYSA 67 +A Sbjct: 218 PEAA 221 Score = 62.7 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +KG+GF+ ++ DVFLH +A+A++G +++ G + Q G+ Sbjct: 60 VKWFNSEKGFGFVE---LSDGSGDVFLHANALATSGHDSVSPGTTLVVRIGQG-PKGRQV 115 Query: 67 AENLKLVPKSSN 78 A + + ++ Sbjct: 116 ASVVSVDDSTAQ 127 >gi|328952681|ref|YP_004370015.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453005|gb|AEB08834.1| cold-shock DNA-binding domain protein [Desulfobacca acetoxidans DSM 11109] Length = 67 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +RG +K++N KG+GFI + G +VF+H S + S G L E + V ++ + Sbjct: 1 MKYRGKVKFFNESKGWGFIKQD----DGPEVFVHYSNIQSKGFRTLKENEEVEFELSEG- 55 Query: 61 ANGKYSAENLKL 72 A G + +KL Sbjct: 56 AKGPQAINVVKL 67 >gi|188575644|ref|YP_001912573.1| hypothetical protein PXO_04812 [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520096|gb|ACD58041.1| conserved domain protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 61 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 6/67 (8%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFI+ E +G+DVF+H A+ G +L EGQ V++ VQ Sbjct: 1 MKWFNDAKGFGFISRE----NGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQKG--LQ 54 Query: 67 AENLKLV 73 A+ +++V Sbjct: 55 ADAVQVV 61 >gi|292490283|ref|YP_003525722.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus Nc4] gi|291578878|gb|ADE13335.1| Cold-shock protein DNA-binding protein [Nitrosococcus halophilus Nc4] Length = 70 Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KGYGFI E G D+F+H ++ G +L EGQ V++ V Sbjct: 5 ETGTVKWFNDAKGYGFIQRES---GGSDLFVHFRSITGHGHKSLEEGQQVSFIEVPGQKG 61 Query: 63 GKYSAENLKLV 73 A+ + ++ Sbjct: 62 --PQADQVTVL 70 >gi|257866254|ref|ZP_05645907.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC30] gi|257873232|ref|ZP_05652885.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC10] gi|257800212|gb|EEV29240.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC30] gi|257807396|gb|EEV36218.1| DNA-binding cold-shock protein [Enterococcus casseliflavus EC10] Length = 66 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KGYGF++ E G D+F+H S++ G NL EGQ V Y +N+ Sbjct: 1 MQNGTVKWFNSEKGYGFVS----GEDGQDIFVHFSSIVGEGYRNLEEGQSVVYKIGENE- 55 Query: 62 NGKYSAENL 70 GK + + Sbjct: 56 KGKVATNVV 64 >gi|303285238|ref|XP_003061909.1| cold-shock DNA binding protein [Micromonas pusilla CCMP1545] gi|226456320|gb|EEH53621.1| cold-shock DNA binding protein [Micromonas pusilla CCMP1545] Length = 121 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFITP+ + +++F+H+SA+ + G +L E + V Y ++D +G Sbjct: 5 TGKVKWFNTQKGFGFITPD---DGSEEIFVHQSAIHAEGFRSLREEEPVEYTVEKSD-DG 60 Query: 64 KYSAENLK 71 + A + Sbjct: 61 RAKAVEVT 68 >gi|270158306|ref|ZP_06186963.1| cold shock-like protein CspG [Legionella longbeachae D-4968] gi|289163444|ref|YP_003453582.1| DNA-binding transcriptional repressor [Legionella longbeachae NSW150] gi|269990331|gb|EEZ96585.1| cold shock-like protein CspG [Legionella longbeachae D-4968] gi|288856617|emb|CBJ10424.1| DNA-binding transcriptional repressor [Legionella longbeachae NSW150] Length = 69 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI E SG DVF H + S+G LTEGQ V + Q Sbjct: 6 NGIVKWFNEAKGFGFIEQE----SGPDVFAHFKEIVSSGFKTLTEGQRVQFVVTQGAKGP 61 Query: 64 KYSAENL 70 + + L Sbjct: 62 QAQSITL 68 >gi|90419403|ref|ZP_01227313.1| possible cold-shock protein [Aurantimonas manganoxydans SI85-9A1] gi|90336340|gb|EAS50081.1| possible cold-shock protein [Aurantimonas manganoxydans SI85-9A1] Length = 210 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KWYN DKG+GFI + G DVF+H +A+ +GL L +GQ VT +VQ + Sbjct: 145 TGTVKWYNADKGFGFIGLDDGA--GKDVFVHATALNRSGLTTLADGQKVTVRFVQGNKGP 202 Score = 46.1 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLTEGQLVTYDYVQNDANGK 64 + W+N KG+GF+ G + FLH A+ +AG +TEG +T Q G Sbjct: 51 VMWFNATKGFGFV----KAADGTEAFLHVRALEAAGASADAVTEGTRLTVRIDQGQ-KGM 105 Query: 65 YSAENLKL 72 E L + Sbjct: 106 QVTEVLSV 113 >gi|238764623|ref|ZP_04625569.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638] gi|238697213|gb|EEP89984.1| Cold shock-like protein cspI [Yersinia kristensenii ATCC 33638] Length = 57 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G +KW++ KG+GFITP + DVF+H SA+ S L EGQ V + Sbjct: 6 TGLVKWFDAGKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSIE 56 >gi|270159744|ref|ZP_06188400.1| cold shock protein CspC [Legionella longbeachae D-4968] gi|289165485|ref|YP_003455623.1| DNA-binding transcriptional repressor [Legionella longbeachae NSW150] gi|269988083|gb|EEZ94338.1| cold shock protein CspC [Legionella longbeachae D-4968] gi|288858658|emb|CBJ12553.1| DNA-binding transcriptional repressor [Legionella longbeachae NSW150] Length = 69 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI E G DVF H +AS+G LTEGQ V + Q Sbjct: 6 NGVVKWFNETKGFGFIEQEC----GPDVFAHFKEIASSGFRTLTEGQRVKFIVTQGAKG- 60 Query: 64 KYSAENL 70 A+N+ Sbjct: 61 -LQAQNI 66 >gi|167468427|ref|ZP_02333131.1| major cold shock protein Cspa1 [Yersinia pestis FV-1] Length = 66 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 KW++ KG+GFITP + DVF+H SA+ S L EGQ V + +N A G + Sbjct: 6 KWFDVCKGFGFITP---ADGSLDVFVHFSAIQSNDFKTLDEGQNVEFSI-ENGAKGPAAV 61 Query: 68 ENLKL 72 + L Sbjct: 62 NVIAL 66 >gi|165976142|ref|YP_001651735.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150037|ref|YP_001968562.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251483|ref|ZP_07337659.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252356|ref|ZP_07338522.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245585|ref|ZP_07527671.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247704|ref|ZP_07529743.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249938|ref|ZP_07531910.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252281|ref|ZP_07534178.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254540|ref|ZP_07536375.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256748|ref|ZP_07538527.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258995|ref|ZP_07540726.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261191|ref|ZP_07542866.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263370|ref|ZP_07544986.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876243|gb|ABY69291.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915168|gb|ACE61420.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648815|gb|EFL79005.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649715|gb|EFL79895.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853287|gb|EFM85506.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855807|gb|EFM87971.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857998|gb|EFM90082.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860203|gb|EFM92219.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862523|gb|EFM94482.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864796|gb|EFM96700.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867019|gb|EFM98876.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868922|gb|EFN00724.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871248|gb|EFN02976.1| Cold shock-like protein cspD [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 68 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFIT + D+F H S + S G +L GQ V ++ + + Sbjct: 1 MEVGIVKWFNSAKGFGFITSDNVE---GDIFAHFSEIQSEGYRSLKVGQKVQFELINGER 57 Query: 62 NGKYSAENLKLVP 74 SA + LV Sbjct: 58 G--ASAAKISLVE 68 >gi|302544493|ref|ZP_07296835.1| cold-shock domain family protein [Streptomyces hygroscopicus ATCC 53653] gi|302462111|gb|EFL25204.1| cold-shock domain family protein [Streptomyces himastatinicus ATCC 53653] Length = 127 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V G+ +L GQ V + V + Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPEGVDSLKPGQRVEFGVVAGNR 55 Query: 62 NGKYSAENLKLVPKS 76 A ++ L+ + Sbjct: 56 G--DQALSVTLLDPA 68 >gi|294814134|ref|ZP_06772777.1| Cold shock protein B [Streptomyces clavuligerus ATCC 27064] gi|294326733|gb|EFG08376.1| Cold shock protein B [Streptomyces clavuligerus ATCC 27064] Length = 132 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KW+N +KG+GF++ + G DVF+H S+V G+ +L GQ V + V Sbjct: 6 VPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPDGVDSLKPGQRVEFGVV-AGQ 59 Query: 62 NGKYSAENLKLVPKSS 77 G + + L P S Sbjct: 60 RGDQALSVVVLDPTPS 75 >gi|182436969|ref|YP_001824688.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777583|ref|ZP_08236848.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465485|dbj|BAG20005.1| putative cold shock protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657916|gb|EGE42762.1| cold-shock DNA-binding domain protein [Streptomyces cf. griseus XylebKG-1] Length = 127 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVEALKPGQRVEFGVV-AGQ 54 Query: 62 NGKYSAENLKLVPKSS 77 G + + L P S Sbjct: 55 RGDQALSVVVLDPTPS 70 >gi|296111917|ref|YP_003622299.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc kimchii IMSNU 11154] gi|295833449|gb|ADG41330.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc kimchii IMSNU 11154] Length = 74 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K + ++GYG+ITP+ E G+DVF+H + + G +L +G+ VTY VQ Sbjct: 1 MKTGTVKIWQKERGYGYITPD---EGGEDVFVHFNGIDMDGFKSLNQGEKVTYQLVQGYK 57 Query: 62 NGKYSAENLKLVPKSSN 78 N Y A ++ V K ++ Sbjct: 58 N--YQAAQVQPVMKKAS 72 >gi|239943237|ref|ZP_04695174.1| putative cold shock protein [Streptomyces roseosporus NRRL 15998] gi|239989696|ref|ZP_04710360.1| putative cold shock protein [Streptomyces roseosporus NRRL 11379] gi|291446710|ref|ZP_06586100.1| cold shock protein [Streptomyces roseosporus NRRL 15998] gi|291349657|gb|EFE76561.1| cold shock protein [Streptomyces roseosporus NRRL 15998] Length = 127 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVDALKPGQRVEFGVV-AGQ 54 Query: 62 NGKYSAENLKLVPKSS 77 G + + L P S Sbjct: 55 RGDQALSVVVLDPTPS 70 >gi|319956775|ref|YP_004168038.1| cold-shock DNA-binding protein family [Nitratifractor salsuginis DSM 16511] gi|319419179|gb|ADV46289.1| cold-shock DNA-binding protein family [Nitratifractor salsuginis DSM 16511] Length = 72 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS--AGLFNLTEGQLVTYDYVQN 59 +H G++KW+N +KGYGFI + G+DVF+H V + G +L EGQ V+++ + Sbjct: 4 LHHGTVKWFNDEKGYGFIQQD---NGGNDVFVHFRQVNNPEGGRVSLYEGQKVSFEIGEG 60 Query: 60 DANGKYSAENLKLV 73 AEN+ + Sbjct: 61 MKG--PQAENVTPL 72 >gi|261868763|ref|YP_003256685.1| cold-shock DNA-binding domain-containing protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414095|gb|ACX83466.1| cold-shock DNA-binding domain protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 69 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI P T+ DVF+H S + L EG V Y+ VQN G Sbjct: 5 NGTVKWFNSIKGFGFIAP---TDGSKDVFVHFSGIVGNNFRTLNEGDHVAYN-VQNSQRG 60 Query: 64 KYSAEN 69 + E Sbjct: 61 PTAIEV 66 >gi|157804047|ref|YP_001492596.1| cold shock-like protein [Rickettsia canadensis str. McKiel] gi|157785310|gb|ABV73811.1| cold shock-like protein [Rickettsia canadensis str. McKiel] Length = 70 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWYN K +GFI E G DVF+H+SAV +AGL++L EGQ V +D + GK Sbjct: 7 GKVKWYNSTKNFGFIEQEH---GGKDVFVHKSAVDAAGLYSLEEGQGVIFDLEE--KQGK 61 Query: 65 YSAENLKL 72 A NL++ Sbjct: 62 AYAVNLRI 69 >gi|68171539|ref|ZP_00544918.1| Cold-shock protein, DNA-binding [Ehrlichia chaffeensis str. Sapulpa] gi|88658217|ref|YP_507119.1| CSD family cold shock protein [Ehrlichia chaffeensis str. Arkansas] gi|67999044|gb|EAM85716.1| Cold-shock protein, DNA-binding [Ehrlichia chaffeensis str. Sapulpa] gi|88599674|gb|ABD45143.1| cold shock protein, CSD family [Ehrlichia chaffeensis str. Arkansas] Length = 88 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 9/79 (11%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTE-------SGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + G +KW++ +KGYGFI + D+F+H +A+ + + L EGQ V Y Sbjct: 11 YTGYVKWFSSEKGYGFICKDQGNNKIRNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQ 70 Query: 56 YVQNDANGKYSAENLKLVP 74 + NGK+SA NL+L+ Sbjct: 71 L--DKNNGKFSAVNLELLE 87 >gi|187478817|ref|YP_786841.1| cold shock protein [Bordetella avium 197N] gi|115423403|emb|CAJ49937.1| cold shock protein [Bordetella avium 197N] Length = 69 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N +KG+GFI PE G D+F H S + G +L E Q V++ Sbjct: 4 ETGVVKWFNSEKGFGFIAPES---GGKDLFAHFSEIVGTGFKSLEENQRVSF-VEGMGPK 59 Query: 63 GKYS 66 G + Sbjct: 60 GPCA 63 >gi|229552085|ref|ZP_04440810.1| cold shock protein CspA [Lactobacillus rhamnosus LMS2-1] gi|229314518|gb|EEN80491.1| cold shock protein CspA [Lactobacillus rhamnosus LMS2-1] gi|328462896|gb|EGF34740.1| cold shock protein [Lactobacillus rhamnosus MTCC 5462] Length = 75 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +K +N DKGYGFI EG D+F+H SA+ +G +LT G+ V + V+ Sbjct: 1 MMQGRVKNFNVDKGYGFIEAEGQ----PDIFVHFSAINESGFKSLTPGEQVDFVIVEG-P 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGPQAANV 63 >gi|255975690|ref|ZP_05426276.1| cold shock protein [Enterococcus faecalis T2] gi|307277908|ref|ZP_07558992.1| major cold shock protein CspA [Enterococcus faecalis TX0860] gi|255968562|gb|EET99184.1| cold shock protein [Enterococcus faecalis T2] gi|306505305|gb|EFM74491.1| major cold shock protein CspA [Enterococcus faecalis TX0860] Length = 68 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW++ KGYGFI D++F+H +A+ G +L E Q V ++ ++ + Sbjct: 1 MQKGIVKWFDNRKGYGFIV----YNEEDEIFVHFTAIEGDGFKSLDENQFVEFEIMEGN- 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 RGLQAAHVKKI 66 >gi|294508964|ref|YP_003565853.1| Cold-shock DNA-binding domain protein [Bacillus megaterium QM B1551] gi|294352268|gb|ADE72590.1| Cold-shock DNA-binding domain protein [Bacillus megaterium QM B1551] Length = 76 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 12/78 (15%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG------LFNLTEGQLVTYD 55 G++KW+N +KG+GFITPE +G D+F+H +A+ + +L EGQ VT+ Sbjct: 4 RQVGTVKWFNHEKGFGFITPE----NGPDLFVHFTAIERTKGTEGVVIKSLKEGQKVTFV 59 Query: 56 YVQNDANGKYSAENLKLV 73 V AE ++++ Sbjct: 60 VVNGQRG--MQAEMVRVL 75 >gi|29830450|ref|NP_825084.1| cold shock protein [Streptomyces avermitilis MA-4680] gi|29607562|dbj|BAC71619.1| putative cold shock protein [Streptomyces avermitilis MA-4680] Length = 127 Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVEALKPGQRVEFGVV-AGQ 54 Query: 62 NGKYSAENLKLVPKSS 77 G + + L P S Sbjct: 55 RGDQALSVVLLDPTPS 70 >gi|209542291|ref|YP_002274520.1| cold-shock DNA-binding domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209529968|gb|ACI49905.1| cold-shock DNA-binding domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 204 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KWYN KG+GFITPE G D+F+H SA+ +GL LTEGQ VQ G Sbjct: 140 RGVVKWYNATKGFGFITPES---GGKDIFVHASALERSGLTGLTEGQTANVQVVQGQ-KG 195 Query: 64 KYSA 67 +A Sbjct: 196 PEAA 199 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +KG+GF+ ++ DVFLH +A+A++G +++ G + Q G+ Sbjct: 38 VKWFNSEKGFGFVE---LSDGSGDVFLHANALATSGHDSVSPGTTLVVRIGQG-PKGRQV 93 Query: 67 AENLKLVPKSSN 78 A + + ++ Sbjct: 94 ASVVSVDDSTAQ 105 >gi|323698523|ref|ZP_08110435.1| cold-shock DNA-binding domain protein [Desulfovibrio sp. ND132] gi|323458455|gb|EGB14320.1| cold-shock DNA-binding domain protein [Desulfovibrio desulfuricans ND132] Length = 76 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M H G + W+N KG+GFIT + G DVF+H + + G L G+ VT+ + Sbjct: 1 MRHTGEVTWFNEQKGFGFITGD----DGRDVFVHYTEIVRDGFQTLEPGEKVTFTLADEE 56 Query: 61 ANGKYSAENLKLVPKS 76 K A +++ ++ Sbjct: 57 TGPK--AVEVRIQEEA 70 >gi|307610951|emb|CBX00570.1| hypothetical protein LPW_22881 [Legionella pneumophila 130b] Length = 69 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI E G DVF H ++S+G LTEGQ V + Q Sbjct: 6 NGVVKWFNELKGFGFIEQE----GGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKG- 60 Query: 64 KYSAENLKLV 73 A+N+ + Sbjct: 61 -LQAQNITPL 69 >gi|329940599|ref|ZP_08289880.1| cold-shock domain-containing protein [Streptomyces griseoaurantiacus M045] gi|329300660|gb|EGG44557.1| cold-shock domain-containing protein [Streptomyces griseoaurantiacus M045] Length = 62 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +KG+GFI +G G DVF H S +A+ G L EGQ V +D Q + Sbjct: 1 MKWFNAEKGFGFIEQDG---GGADVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKG--PT 55 Query: 67 AENL 70 AEN+ Sbjct: 56 AENI 59 >gi|312078159|ref|XP_003141617.1| cold-shock DNA-binding domain-containing protein [Loa loa] gi|307763216|gb|EFO22450.1| cold-shock DNA-binding domain-containing protein [Loa loa] Length = 199 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 9/78 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH-----RSAVASAGLFNLTEGQLVTYDY 56 G+ KW+N KGYGFITP+ + GDDVF+H S + G +L G+ V + Sbjct: 8 AQIGTCKWFNVLKGYGFITPD---QGGDDVFVHQASEIFSELNMDGFRSLDAGERVRF-V 63 Query: 57 VQNDANGKYSAENLKLVP 74 ++ + G + + P Sbjct: 64 IRKRSEGNEATAVVSAEP 81 >gi|71027909|ref|XP_763598.1| cold shock protein [Theileria parva strain Muguga] gi|68350551|gb|EAN31315.1| cold shock protein, putative [Theileria parva] Length = 94 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G KW+N KGYGFIT E+G+DVF+H+S + + G +L E + V + + ++ Sbjct: 5 NGVCKWFNNKKGYGFIT----LENGEDVFVHQSEIYADGFRSLRENEKVELEVIMDNNRK 60 Query: 64 K 64 K Sbjct: 61 K 61 >gi|297158325|gb|ADI08037.1| cold shock protein [Streptomyces bingchenggensis BCW-1] Length = 127 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V G+ +L GQ V + V + Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPEGVDSLKPGQRVEFGVVAGNR 55 Query: 62 NGKYSAENLKLVPKS 76 A ++ ++ + Sbjct: 56 G--DQALSVTVLDPT 68 >gi|24658520|ref|NP_647983.1| lin-28 [Drosophila melanogaster] gi|75027386|sp|Q9VRN5|LIN28_DROME RecName: Full=Protein lin-28 homolog gi|21842295|gb|AAM77748.1|AF521096_1 RNA-binding protein LIN-28 [Drosophila melanogaster] gi|21392070|gb|AAM48389.1| RE05342p [Drosophila melanogaster] gi|23094110|gb|AAF50758.2| lin-28 [Drosophila melanogaster] gi|220947728|gb|ACL86407.1| lin-28-PA [synthetic construct] gi|220957108|gb|ACL91097.1| lin-28-PA [synthetic construct] Length = 195 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G KW+N KG+GF+TP + G +VF+H+S + +G +L E + V ++ Q + G Sbjct: 41 GKCKWFNVAKGWGFLTP---NDGGQEVFVHQSVIQMSGFRSLGEQEEVEFEC-QRTSRGL 96 Query: 65 YS 66 + Sbjct: 97 EA 98 >gi|332283634|ref|YP_004415545.1| cold shock protein [Pusillimonas sp. T7-7] gi|330427587|gb|AEC18921.1| cold shock protein [Pusillimonas sp. T7-7] Length = 69 Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW+N +KG+GFI PE G D+F H + + G +L E Q V+Y + Sbjct: 4 ETGIVKWFNNEKGFGFIKPES---GGKDLFAHHTDIIGTGFKSLEENQRVSYVAAEGQKG 60 Query: 63 GKYSAENL 70 + + + Sbjct: 61 PQAKSIQV 68 >gi|54294960|ref|YP_127375.1| hypothetical protein lpl2039 [Legionella pneumophila str. Lens] gi|53754792|emb|CAH16279.1| hypothetical protein lpl2039 [Legionella pneumophila str. Lens] Length = 69 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI E G DVF H ++S+G LTEGQ V + Q Sbjct: 6 NGVVKWFNEIKGFGFIEQE----GGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKG- 60 Query: 64 KYSAENLKLV 73 A+N+ + Sbjct: 61 -LQAQNITPL 69 >gi|296116126|ref|ZP_06834744.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769] gi|295977232|gb|EFG83992.1| cold shock protein [Gluconacetobacter hansenii ATCC 23769] Length = 208 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYDYVQND 60 RG +KWYN KG+GFITPE G D+F+H SA+ + GL +L+EGQ V+ Sbjct: 141 RGIVKWYNATKGFGFITPES---GGKDIFVHASALERSGLTGLTSLSEGQTANVQVVEGQ 197 Query: 61 ANGKYSAENL 70 + +A ++ Sbjct: 198 KGPEAAAISV 207 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ ++ DVFLH +A+ G ++ G + Q G+ Sbjct: 38 TVKWFNSEKGFGFVE---LSDGSGDVFLHANALNPTGFETVSPGSTLVVRIGQG-PKGRQ 93 Query: 66 SAENLKLVPKSSN 78 A + + ++ Sbjct: 94 VAAVVSVDESTAQ 106 >gi|221483569|gb|EEE21881.1| glycine-rich protein, putative [Toxoplasma gondii GT1] Length = 209 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG KW++ KG+GFIT E G D+F+H++ + + G NL EG+ V + VQ Sbjct: 87 IQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVGH 141 Query: 62 NGKYSAENLK 71 +GK A ++ Sbjct: 142 DGKRKAVSVT 151 >gi|294629991|ref|ZP_06708551.1| cold-shock domain family protein [Streptomyces sp. e14] gi|292833324|gb|EFF91673.1| cold-shock domain family protein [Streptomyces sp. e14] Length = 127 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVDALKPGQRVEFGVVAGQR 55 Query: 62 NGKYSAENLKLVPKS 76 A ++ L+ + Sbjct: 56 G--DQALSVTLLEPT 68 >gi|254481328|ref|ZP_05094573.1| 'Cold-shock' DNA-binding domain protein [marine gamma proteobacterium HTCC2148] gi|214038491|gb|EEB79153.1| 'Cold-shock' DNA-binding domain protein [marine gamma proteobacterium HTCC2148] Length = 145 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GFIT + G+++F+H ++ G L +GQ V++ V+ + Sbjct: 80 REEGEVKWFNVSKGFGFITKD----DGEEIFVHFRSIIGEGRRGLKDGQRVSF--VEANT 133 Query: 62 NGKYSAENLKLV 73 + AEN++ + Sbjct: 134 DKGPQAENVEPL 145 >gi|163791084|ref|ZP_02185504.1| cold-shock protein [Carnobacterium sp. AT7] gi|159873640|gb|EDP67724.1| cold-shock protein [Carnobacterium sp. AT7] Length = 68 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60 + G++KW++ +KGYGFI +D+F+H + + G +LT+GQLV+++ ++ Sbjct: 1 MENGTVKWFSNEKGYGFIE----YNETEDIFVHFTGIVNEDGFKSLTDGQLVSFEILEGT 56 Query: 61 ANGKYSAENLKLV 73 A N+ ++ Sbjct: 57 RG--PQATNVIVL 67 >gi|158296117|ref|XP_316618.3| AGAP006591-PA [Anopheles gambiae str. PEST] gi|157016359|gb|EAA11383.3| AGAP006591-PA [Anopheles gambiae str. PEST] Length = 182 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 RG KW+N KG+GFITP+ + G +VF+H+S + G +L E + V ++ Sbjct: 43 RGRCKWFNVVKGWGFITPD---DGGQEVFVHQSVIQMGGFRSLGENEEVEFE 91 >gi|62421414|gb|AAX82482.1| cold shock protein [Bacillus thuringiensis serovar kurstaki] Length = 60 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 K +N +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q + G +A Sbjct: 3 KRFNSEKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGN-RGPQAA 57 Query: 68 EN 69 Sbjct: 58 NV 59 >gi|254514075|ref|ZP_05126136.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR5-3] gi|219676318|gb|EED32683.1| putative 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR5-3] Length = 70 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFIT E DVF+H ++ G L EG+ V + + Sbjct: 7 GTVKWFNNAKGFGFITGESFD---GDVFVHFRSIVGDGFRTLNEGEEVEFTLTEGPKG-- 61 Query: 65 YSAENLKLV 73 AE++ + Sbjct: 62 LQAEDVAKI 70 >gi|70905153|gb|AAZ14100.1| cold shock protein [Pseudomonas fluorescens] Length = 69 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KG+GFITP+G GDD+F+H G +L EGQ V++ V Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHF-PFQGTGFKSLQEGQKVSFVVVNGQK 59 Query: 62 NGKYSAENLKLV 73 A+ +++V Sbjct: 60 G--LQADEVQVV 69 >gi|295838145|ref|ZP_06825078.1| cold-shock domain family protein [Streptomyces sp. SPB74] gi|295826890|gb|EFG65133.1| cold-shock domain family protein [Streptomyces sp. SPB74] Length = 127 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H SA+ + L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVHSSALPQD-VETLKPGQRVEFGVVAGQR 55 Query: 62 NGKYSAENLKLVPKS 76 A + ++ + Sbjct: 56 G--DQALTVTVLDPA 68 >gi|240139725|ref|YP_002964202.1| putative transcriptional regulator, cold shock protein [Methylobacterium extorquens AM1] gi|254562138|ref|YP_003069233.1| transcriptional regulator, cold shock protein [Methylobacterium extorquens DM4] gi|240009699|gb|ACS40925.1| putative transcriptional regulator, cold shock protein [Methylobacterium extorquens AM1] gi|254269416|emb|CAX25382.1| putative transcriptional regulator, cold shock protein [Methylobacterium extorquens DM4] Length = 278 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 3/68 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KWY+P KG+GF++ + G DVF+HRSA++ AGL +L EGQ VT V+ Sbjct: 213 TGTVKWYDPAKGFGFVSV---NDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGR 269 Query: 64 KYSAENLK 71 + S+ ++ Sbjct: 270 EASSITVE 277 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ + D FLH AV +AG +L G +T Q + Sbjct: 81 TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 137 Query: 66 SAEN 69 +A N Sbjct: 138 TAVN 141 >gi|221504402|gb|EEE30077.1| glycine-rich protein, putative [Toxoplasma gondii VEG] Length = 209 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG KW++ KG+GFIT E G D+F+H++ + + G NL EG+ V + VQ Sbjct: 87 IQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVGH 141 Query: 62 NGKYSAENLK 71 +GK A ++ Sbjct: 142 DGKRKAVSVT 151 >gi|218531150|ref|YP_002421966.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|218523453|gb|ACK84038.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] Length = 279 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 3/68 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KWY+P KG+GF++ + G DVF+HRSA++ AGL +L EGQ VT V+ Sbjct: 214 TGTVKWYDPAKGFGFVSV---NDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGR 270 Query: 64 KYSAENLK 71 + S+ ++ Sbjct: 271 EASSITVE 278 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ + D FLH AV +AG +L G +T Q + Sbjct: 81 TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 137 Query: 66 SAEN 69 +A N Sbjct: 138 TAVN 141 >gi|163852391|ref|YP_001640434.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|163663996|gb|ABY31363.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] Length = 281 Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 3/68 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KWY+P KG+GF++ + G DVF+HRSA++ AGL +L EGQ VT V+ Sbjct: 216 TGTVKWYDPAKGFGFVSV---NDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGR 272 Query: 64 KYSAENLK 71 + S+ ++ Sbjct: 273 EASSITVE 280 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ + D FLH AV +AG +L G +T Q + Sbjct: 81 TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 137 Query: 66 SAEN 69 +A N Sbjct: 138 TAVN 141 >gi|294013110|ref|YP_003546570.1| cold shock protein CspA [Sphingobium japonicum UT26S] gi|292676440|dbj|BAI97958.1| cold shock protein CspA [Sphingobium japonicum UT26S] Length = 272 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AG+ L EG + ++ + D GK Sbjct: 206 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMSALNEGDRLDFEL-EVDRRGK 261 Query: 65 YSAENLK 71 Y+A NL+ Sbjct: 262 YAAVNLQ 268 Score = 85.0 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K++N KG+GFI + + G+DVF+H SAV AGL L EGQ + + V D G Sbjct: 101 TGVVKFFNGQKGFGFIVRD---DGGEDVFVHISAVEQAGLTGLAEGQPLGFTLV--DRGG 155 Query: 64 KYSAENLKL 72 K SA +LK+ Sbjct: 156 KVSATDLKI 164 >gi|149908141|ref|ZP_01896805.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] gi|149808683|gb|EDM68616.1| cold-shock DNA-binding domain family protein [Moritella sp. PE36] Length = 69 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K++N KG+GFI E +G DVF+H S++ G LT+GQ V + Q Sbjct: 7 GKVKFFNEAKGFGFIEQE----NGPDVFVHFSSILVDGFKVLTDGQKVEFTVGQGQKG-- 60 Query: 65 YSAENLKLV 73 AEN+K + Sbjct: 61 PQAENVKPL 69 >gi|113460999|ref|YP_719066.1| cold-shock DNA-binding protein family protein [Haemophilus somnus 129PT] gi|170717567|ref|YP_001784653.1| cold-shock DNA-binding domain-containing protein [Haemophilus somnus 2336] gi|112823042|gb|ABI25131.1| cold-shock DNA-binding protein family [Haemophilus somnus 129PT] gi|168825696|gb|ACA31067.1| putative cold-shock DNA-binding domain protein [Haemophilus somnus 2336] Length = 69 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GF++ E S DVF H S + G +L GQ V + V D Sbjct: 1 MEVGIVKWFNNAKGFGFLSVESSDV---DVFAHYSVIEMEGYRSLKAGQKVQCEVVHGDK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|255525596|ref|ZP_05392530.1| cold-shock DNA-binding domain protein [Clostridium carboxidivorans P7] gi|296185483|ref|ZP_06853893.1| cold-shock DNA-binding domain protein [Clostridium carboxidivorans P7] gi|255510686|gb|EET86992.1| cold-shock DNA-binding domain protein [Clostridium carboxidivorans P7] gi|296050317|gb|EFG89741.1| cold-shock DNA-binding domain protein [Clostridium carboxidivorans P7] Length = 67 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 7/71 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + G +KW+N +KG+GFI S E G DVF+H SA+ G +L+EGQ V YD ++ Sbjct: 1 MLTGVVKWFNDEKGFGFI----SGEDGTDVFVHYSAIKEEGKRKDLSEGQQVQYDVIETP 56 Query: 61 ANGKYSAENLK 71 A N++ Sbjct: 57 KG--LQASNVQ 65 >gi|219123826|ref|XP_002182218.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406179|gb|EEC46119.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 286 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Query: 4 RGSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDA 61 +G++KW++ KGYGF+ P ++ + +++F+H++++ S G L E + +D + Sbjct: 5 QGTVKWFDSRKGYGFVAPTSDNSPTAEEIFVHQTSIQSEGAYRTLVENSEIEFDVEKEAE 64 Query: 62 NGKYSAENLK 71 +GK+ A N+ Sbjct: 65 SGKFKAINVT 74 >gi|119476410|ref|ZP_01616761.1| Cold-shock DNA-binding protein [marine gamma proteobacterium HTCC2143] gi|119450274|gb|EAW31509.1| Cold-shock DNA-binding protein [marine gamma proteobacterium HTCC2143] Length = 144 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KGYGF+T SG+++F+H +++ G L EGQ + + V D Sbjct: 77 EIGTVKWFNVSKGYGFVT----RASGEEIFVHFRSISGNGRKVLREGQKIEFSVVDGDKG 132 Query: 63 GKYSAENLKLV 73 AE++ +V Sbjct: 133 --PQAEDVDIV 141 >gi|56416469|ref|YP_153543.1| cold shock protein [Anaplasma marginale str. St. Maries] gi|222474838|ref|YP_002563253.1| cold shock protein (cspA) [Anaplasma marginale str. Florida] gi|269959118|ref|YP_003328907.1| putative cold-shock protein [Anaplasma centrale str. Israel] gi|56387701|gb|AAV86288.1| cold shock protein [Anaplasma marginale str. St. Maries] gi|222418974|gb|ACM48997.1| cold shock protein (cspA) [Anaplasma marginale str. Florida] gi|269848949|gb|ACZ49593.1| putative cold-shock protein [Anaplasma centrale str. Israel] Length = 92 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 12/83 (14%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESG----------DDVFLHRSAVASAGLFNLTEGQLV 52 + G +KW++ +KGYGFI +GS + DVF+H +++ + + NL EGQ V Sbjct: 12 YTGHVKWFSVEKGYGFICKDGSDDGKSGGASFGRGDKDVFVHITSLQRSRIDNLREGQRV 71 Query: 53 TYDYVQNDANGKYSAENLKLVPK 75 Y +++NGK SA NL+++ + Sbjct: 72 RYQL--DESNGKVSAVNLEVLSE 92 >gi|33152437|ref|NP_873790.1| cold shock-like protein CspD [Haemophilus ducreyi 35000HP] gi|33148660|gb|AAP96179.1| cold shock-like protein CspD [Haemophilus ducreyi 35000HP] Length = 68 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H G +KW+N KG+GFIT + D+F H S + G +L GQ V ++ V N+ Sbjct: 1 MHIGIVKWFNNVKGFGFITCDTVE---GDIFAHFSEIKQDGYRSLKVGQKVQFELVTNER 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|40062711|gb|AAR37624.1| cold shock DNA-binding domain protein [uncultured marine bacterium 314] Length = 68 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N KGYGFI E DVF+H +AV AGL L EG +T++ V+N Sbjct: 1 MSLKGKVKWFNGKKGYGFIEREDKE---KDVFVHHTAVRDAGLKYLNEGDELTFE-VENG 56 Query: 61 ANGKYSAENLK 71 G SA NL+ Sbjct: 57 EKGP-SAVNLQ 66 >gi|229526567|ref|ZP_04415971.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426] gi|229336725|gb|EEO01743.1| cold shock protein CspA [Vibrio cholerae bv. albensis VL426] Length = 72 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+N KG+GFITP+ G DVF+H +++AS G+ L E Q V + Q Sbjct: 8 TGSVKWFNESKGFGFITPDS---GGSDVFVHFNSIASGGVKTLFEVQKVNFSIEQGSKG- 63 Query: 64 KYSAENL 70 A N+ Sbjct: 64 -LQAVNV 69 >gi|302535935|ref|ZP_07288277.1| cold shock protein [Streptomyces sp. C] gi|302444830|gb|EFL16646.1| cold shock protein [Streptomyces sp. C] Length = 127 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVDALKPGQRVEFGVVAGQR 55 Query: 62 NGKYSAENLKLVPKS 76 A ++ ++ + Sbjct: 56 G--DQALSVTVLDPA 68 >gi|302520002|ref|ZP_07272344.1| cold shock protein B [Streptomyces sp. SPB78] gi|318061816|ref|ZP_07980537.1| putative cold shock protein [Streptomyces sp. SA3_actG] gi|318079283|ref|ZP_07986615.1| putative cold shock protein [Streptomyces sp. SA3_actF] gi|302428897|gb|EFL00713.1| cold shock protein B [Streptomyces sp. SPB78] Length = 127 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H SA+ + L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVHSSALPQD-VETLKPGQRVEFGVVAGQR 55 Query: 62 NGKYSAENLKLVPKS 76 A + ++ + Sbjct: 56 G--DQALTVTVLDPT 68 >gi|237841239|ref|XP_002369917.1| glycine-rich protein 2, putative [Toxoplasma gondii ME49] gi|211967581|gb|EEB02777.1| glycine-rich protein 2, putative [Toxoplasma gondii ME49] Length = 209 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG KW++ KG+GFIT E G D+F+H++ + + G NL EG+ V + VQ Sbjct: 87 IQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVGH 141 Query: 62 NGKYSAENLK 71 +GK A ++ Sbjct: 142 DGKRKAVSVT 151 >gi|52842335|ref|YP_096134.1| cold shock DNA binding domain-containing protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54297985|ref|YP_124354.1| hypothetical protein lpp2041 [Legionella pneumophila str. Paris] gi|148359631|ref|YP_001250838.1| cold shock DNA binding domain-containing protein [Legionella pneumophila str. Corby] gi|296107674|ref|YP_003619375.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy] gi|52629446|gb|AAU28187.1| cold shock DNA binding domain protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751770|emb|CAH13193.1| hypothetical protein lpp2041 [Legionella pneumophila str. Paris] gi|148281404|gb|ABQ55492.1| cold shock DNA binding domain protein [Legionella pneumophila str. Corby] gi|295649576|gb|ADG25423.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy] Length = 69 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI E G DVF H ++S+G LTEGQ V + Q Sbjct: 6 NGVVKWFNEIKGFGFIEQE----GGPDVFAHFKEISSSGFKTLTEGQRVQFIVTQGAKG- 60 Query: 64 KYSAENLKLV 73 A+N+ + Sbjct: 61 -LQAQNITAL 69 >gi|239981450|ref|ZP_04703974.1| putative cold shock protein [Streptomyces albus J1074] gi|291453301|ref|ZP_06592691.1| cold shock protein [Streptomyces albus J1074] gi|291356250|gb|EFE83152.1| cold shock protein [Streptomyces albus J1074] Length = 127 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVEALKPGQRVEFGVV-AGQ 54 Query: 62 NGKYSAENLKLVPKSS 77 G + + L P S Sbjct: 55 RGDQALSVVLLDPAPS 70 >gi|254994694|ref|ZP_05276884.1| cold shock protein (cspA) [Anaplasma marginale str. Mississippi] gi|255002811|ref|ZP_05277775.1| cold shock protein (cspA) [Anaplasma marginale str. Puerto Rico] gi|255003942|ref|ZP_05278743.1| cold shock protein (cspA) [Anaplasma marginale str. Virginia] Length = 91 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 12/83 (14%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESG----------DDVFLHRSAVASAGLFNLTEGQLV 52 + G +KW++ +KGYGFI +GS + DVF+H +++ + + NL EGQ V Sbjct: 11 YTGHVKWFSVEKGYGFICKDGSDDGKSGGASFGRGDKDVFVHITSLQRSRIDNLREGQRV 70 Query: 53 TYDYVQNDANGKYSAENLKLVPK 75 Y +++NGK SA NL+++ + Sbjct: 71 RYQL--DESNGKVSAVNLEVLSE 91 >gi|73667319|ref|YP_303335.1| cold-shock DNA-binding protein family protein [Ehrlichia canis str. Jake] gi|72394460|gb|AAZ68737.1| cold-shock DNA-binding protein family [Ehrlichia canis str. Jake] Length = 87 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTE------SGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + G +KW++ +KGYGFI + + D+F+H +A+ + + L EGQ V Y Sbjct: 11 YTGYVKWFSSEKGYGFICKDQGDKVKNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQL 70 Query: 57 VQNDANGKYSAENLKLVP 74 + NGK+SA NL+++ Sbjct: 71 --DKNNGKFSAVNLEVLE 86 >gi|239930549|ref|ZP_04687502.1| putative cold shock protein [Streptomyces ghanaensis ATCC 14672] gi|291438911|ref|ZP_06578301.1| cold shock protein B [Streptomyces ghanaensis ATCC 14672] gi|291341806|gb|EFE68762.1| cold shock protein B [Streptomyces ghanaensis ATCC 14672] Length = 127 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVEALKPGQRVEFGVVAGQR 55 Query: 62 NGKYSAENLKLVPKS 76 A +L L+ + Sbjct: 56 G--DQALSLTLLDPT 68 >gi|170585110|ref|XP_001897330.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi] gi|158595278|gb|EDP33845.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi] Length = 205 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 12/81 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLH--------RSAVASAGLFNLTEGQLVT 53 + G+ KW+N KGYGFITP+ E GDDVF+H +S + G +L G+ V Sbjct: 8 IQVGTCKWFNVLKGYGFITPD---EGGDDVFVHQASGVFFIQSELNMDGFRSLDAGERVR 64 Query: 54 YDYVQNDANGKYSAENLKLVP 74 + ++ G + + P Sbjct: 65 F-VIRRRPEGNEATAVVSAEP 84 >gi|85001185|ref|XP_955311.1| cold shock protein [Theileria annulata strain Ankara] gi|65303457|emb|CAI75835.1| cold shock protein, putative [Theileria annulata] Length = 95 Score = 85.0 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G KW+N KGYGFIT E+G+DVF+H+S + + G +L E + V + + ++ Sbjct: 5 NGVCKWFNNKKGYGFIT----LENGEDVFVHQSEIYADGFRSLHENEKVELEVIMDNNRK 60 Query: 64 K 64 K Sbjct: 61 K 61 >gi|297193662|ref|ZP_06911060.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151865|gb|EFH31383.1| cold shock protein [Streptomyces pristinaespiralis ATCC 25486] Length = 127 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V +G+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPSGVEALKPGQRVEFGVVAGQR 55 Query: 62 NGKYSAENLKLVPKS 76 A ++ L+ + Sbjct: 56 G--DQALSVTLLDPT 68 >gi|152992263|ref|YP_001357984.1| cold shock protein [Sulfurovum sp. NBC37-1] gi|151424124|dbj|BAF71627.1| cold shock protein [Sulfurovum sp. NBC37-1] Length = 72 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQNDA 61 G++KW+N +KGYGFI E G DVF+H V + G L EGQ VT++ + Sbjct: 6 NGTVKWFNDEKGYGFIQQE---NGGSDVFVHFRQVNNDNGGRVTLAEGQAVTFEIGEGQK 62 Query: 62 NGKYSAENLKLV 73 AEN+ + Sbjct: 63 G--PQAENVTPL 72 >gi|259047117|ref|ZP_05737518.1| cold shock domain protein CspD [Granulicatella adiacens ATCC 49175] gi|259036167|gb|EEW37422.1| cold shock domain protein CspD [Granulicatella adiacens ATCC 49175] Length = 71 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 + G +KW+N +KGYGFI +T++ +D+F+H + + + G +L EGQ VT++ + Sbjct: 1 MEVGIVKWFNNEKGYGFI---RNTKTDEDIFVHFTGIVAEGFKSLKEGQKVTFEISKG 55 >gi|302560009|ref|ZP_07312351.1| cold-shock domain family protein [Streptomyces griseoflavus Tu4000] gi|302477627|gb|EFL40720.1| cold-shock domain family protein [Streptomyces griseoflavus Tu4000] Length = 127 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVEALKPGQRVEFGVVAGQR 55 Query: 62 NGKYSAENLKLVPKS 76 A +L ++ + Sbjct: 56 G--DQALSLTILDPT 68 >gi|188582398|ref|YP_001925843.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] gi|179345896|gb|ACB81308.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] Length = 268 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 3/67 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KWY+P KG+GF++ + G DVF+HRSA++ AGL +L EGQ VT V+ Sbjct: 203 TGTVKWYDPAKGFGFVSV---NDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKGR 259 Query: 64 KYSAENL 70 + S+ + Sbjct: 260 EASSITV 266 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +KG+GF+ + D FLH AV +AG +L G +T Q + Sbjct: 78 TVKWFNKEKGFGFVE---LGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQV 134 Query: 66 SAEN 69 +A N Sbjct: 135 TAVN 138 >gi|302808614|ref|XP_002986001.1| hypothetical protein SELMODRAFT_123455 [Selaginella moellendorffii] gi|300146149|gb|EFJ12820.1| hypothetical protein SELMODRAFT_123455 [Selaginella moellendorffii] Length = 63 Score = 84.6 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 3/57 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G +KW+N KG+GFITP+ + +++F+H+SA+ + G +L EG++V + Q + Sbjct: 10 TGKVKWFNVTKGFGFITPD---DGSEELFVHQSAIFAEGFRSLREGEIVEFSVEQGE 63 >gi|291513784|emb|CBK62994.1| cold-shock DNA-binding protein family [Alistipes shahii WAL 8301] Length = 66 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KGYGFIT E+G ++F+H S +A G +L EGQ V ++ Sbjct: 2 TGKVKWFDGKKGYGFIT----AENGKEIFVHFSGIAKDGFKSLNEGQAVEFEVGSGAKG- 56 Query: 64 KYSAENLKLVP 74 A N+ +V Sbjct: 57 -EQAINVTVVE 66 >gi|254429192|ref|ZP_05042899.1| 'Cold-shock' DNA-binding domain protein [Alcanivorax sp. DG881] gi|196195361|gb|EDX90320.1| 'Cold-shock' DNA-binding domain protein [Alcanivorax sp. DG881] Length = 202 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 6/68 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 RG +KW+NP+KG+GFI T+SG+++F+H AV + G +L G V +D +D Sbjct: 137 QRGEVKWFNPNKGFGFI----LTDSGEELFVHFKAVQNGGRRSLRTGTKVRFDTRMSDRG 192 Query: 63 GKYSAENL 70 A+N+ Sbjct: 193 --EQADNV 198 >gi|328884184|emb|CCA57423.1| Cold shock protein CspC [Streptomyces venezuelae ATCC 10712] Length = 127 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPAGVDALKPGQRVEFGVVAGQR 55 Query: 62 NGKYSAENLKLVPKS 76 A ++ ++ + Sbjct: 56 G--DQALSVTILDPT 68 >gi|323158695|gb|EFZ44709.1| cold shock-like protein cspI [Escherichia coli E128010] Length = 63 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%) Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 N KG+GFITP + DVF+H SA+ G L EGQ V ++ Q+ G +A N+ Sbjct: 6 NESKGFGFITP---ADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKGP-AAVNV 60 Query: 71 KLV 73 + Sbjct: 61 TAI 63 >gi|301321057|gb|ADK69700.1| cold-shock DNA-binding domain protein [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 69 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFIT + DVF++ S + G L +GQ VTY+ + Sbjct: 1 MNTGIVKWFNDEKGFGFITNDS---DNKDVFVYYSNINVNGYKTLEQGQKVTYELNKGIK 57 Query: 62 NGKYSAENLKL 72 A N+ + Sbjct: 58 G--LEAFNVSI 66 >gi|330982957|gb|EGH81060.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 50 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 3/49 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50 G++KW+N +KG+GFITP+G GDD+F+H A+ S G +L EGQ Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDGFKSLKEGQ 49 >gi|307293725|ref|ZP_07573569.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306879876|gb|EFN11093.1| cold-shock DNA-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 275 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K++N KG+GFI + + G+DVF+H SAV AGL L EGQ + + V D G Sbjct: 106 TGVVKFFNGQKGFGFIVRD---DGGEDVFVHISAVEQAGLTGLAEGQQLGFTLV--DRGG 160 Query: 64 KYSAENLKL 72 K SA +LK+ Sbjct: 161 KVSATDLKI 169 Score = 83.8 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K++N KG+GFI + + D F+H SAV AG+ L EG + ++ + D GK Sbjct: 209 GTVKFFNAMKGFGFIQRD---DGQPDAFVHISAVERAGMSALNEGDRLDFEL-EVDRRGK 264 Query: 65 YSAENLK 71 Y+A NL+ Sbjct: 265 YAAVNLQ 271 >gi|160914514|ref|ZP_02076729.1| hypothetical protein EUBDOL_00520 [Eubacterium dolichum DSM 3991] gi|158433672|gb|EDP11961.1| hypothetical protein EUBDOL_00520 [Eubacterium dolichum DSM 3991] Length = 65 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N +KG+GFI TE D+F+H S + G +L EG+ V ++ +++ Sbjct: 2 TGNVKWFNAEKGFGFI----RTEEEKDIFVHYSQIVQDGYKSLNEGEAVRFEIFESEKG- 56 Query: 64 KYSAENLK 71 A+N++ Sbjct: 57 -LQAKNVE 63 >gi|313157470|gb|EFR56889.1| cold shock-like protein CspE [Alistipes sp. HGB5] Length = 66 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KGYGFIT E+G ++F+H S + + G +L EGQ V ++ Sbjct: 2 TGKVKWFDSKKGYGFIT----GENGKEIFVHFSGIVTDGFKSLNEGQAVEFEVGSGAKG- 56 Query: 64 KYSAENLKLVP 74 A N+ ++ Sbjct: 57 -DQAVNVTVIE 66 >gi|163802256|ref|ZP_02196151.1| Cold shock protein [Vibrio sp. AND4] gi|159174061|gb|EDP58871.1| Cold shock protein [Vibrio sp. AND4] Length = 69 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N KG+GFI+ E SGDD+F+H ++ G L EG+ V++ Sbjct: 6 TGTVKWFNEAKGFGFISQE----SGDDLFVHFRSILGDGFKKLVEGEQVSFTVGHGPKG- 60 Query: 64 KYSAENL 70 AEN+ Sbjct: 61 -LQAENV 66 >gi|254514074|ref|ZP_05126135.1| cold shock protein [gamma proteobacterium NOR5-3] gi|219676317|gb|EED32682.1| cold shock protein [gamma proteobacterium NOR5-3] Length = 171 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW+N KG+GFI E +GD++F+H ++ G +L +G V Y V D Sbjct: 106 ENGTVKWFNGTKGFGFIIRE----NGDEIFVHHRSIVGEGRRSLRDGAAVKYRVVTTDKG 161 Query: 63 GKYSAENLKLV 73 AE ++ + Sbjct: 162 --PQAEEVEAI 170 >gi|157105290|ref|XP_001648803.1| RNA-binding protein lin-28 [Aedes aegypti] gi|108880147|gb|EAT44372.1| RNA-binding protein lin-28 [Aedes aegypti] Length = 157 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 RG KW+N KG+GFITP+ + G DVF+H+S + G +L + + V ++ D Sbjct: 2 RGLCKWFNVIKGWGFITPD---DGGQDVFVHQSVLQMEGFRSLGQNEPVEFEAKLTDKG 57 >gi|91226275|ref|ZP_01261115.1| cold-shock DNA-binding domain protein [Vibrio alginolyticus 12G01] gi|91189286|gb|EAS75565.1| cold-shock DNA-binding domain protein [Vibrio alginolyticus 12G01] Length = 69 Score = 83.8 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI+ ++GDD+F+H ++ G L EG V++ + Sbjct: 7 GTVKWFNETKGFGFISQ----QNGDDLFVHFRSILGDGFKKLVEGDKVSFTVGKGPKG-- 60 Query: 65 YSAENLKLV 73 AEN+ + Sbjct: 61 LQAENVTTI 69 >gi|325003077|ref|ZP_08124189.1| cold shock protein CspA [Pseudonocardia sp. P1] Length = 309 Score = 83.8 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 6/77 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQND 60 + +G+++W++ ++G+GF+ PE + DVF+H S + G L EGQ V ++ +ND Sbjct: 1 MQQGTVRWFDAERGFGFLAPE---DGSPDVFVHASEIVGGGGATVLREGQAVEFEIGEND 57 Query: 61 ANGKYSAENLKLVPKSS 77 A +++ ++ Sbjct: 58 RG--PQALRVRVTADAA 72 Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ WY P KGYGF +P+ + G D+F+H SA+ + G+ EGQ V + V + G Sbjct: 81 GTVNWYEPGKGYGFASPD---DGGADIFVHSSAIVTGGVVT--EGQRVAFLVV-DGERGP 134 Query: 65 YSAENLKL 72 + + L Sbjct: 135 QAGHVIPL 142 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 + WY+ DKG+GFI P+ E DVF+H A+A GL L EG V ++ D Sbjct: 162 VAWYDEDKGFGFINPDSGDE---DVFVHARALA-EGLTWLMEGDRVAFEVASGDKG--PQ 215 Query: 67 AENLKLVPK 75 A ++ LV + Sbjct: 216 ARDVHLVRE 224 Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + Y+ D+G+GFITP+ GDD+F H S V + L +G V + Q+D Sbjct: 247 EGVVARYDDDRGFGFITPDA---GGDDLFAHVSVVMGS--EPLQKGDRVRFAVRQSDRGP 301 Query: 64 K 64 + Sbjct: 302 Q 302 >gi|260775774|ref|ZP_05884670.1| cold shock protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608190|gb|EEX34359.1| cold shock protein [Vibrio coralliilyticus ATCC BAA-450] Length = 69 Score = 83.8 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI+ +GDD+F+H ++ G L EG V++ + Sbjct: 7 GTVKWFNETKGFGFISQ----ANGDDLFVHFRSILGDGFKKLVEGDKVSFTVGKGPKG-- 60 Query: 65 YSAENLKLV 73 AEN+ + Sbjct: 61 LQAENVTTI 69 >gi|91223648|ref|ZP_01258913.1| Cold shock protein [Vibrio alginolyticus 12G01] gi|91191734|gb|EAS77998.1| Cold shock protein [Vibrio alginolyticus 12G01] Length = 69 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI+ E +GDD+F+H ++ G L EG+ V++ + Sbjct: 7 GTVKWFNETKGFGFISQE----NGDDLFVHFRSILGDGFKKLIEGEQVSFTVGKGPKG-- 60 Query: 65 YSAENLKLV 73 AEN+ + Sbjct: 61 LQAENVTTI 69 >gi|15596158|ref|NP_249652.1| cold-shock protein [Pseudomonas aeruginosa PAO1] gi|218893068|ref|YP_002441937.1| putative cold-shock protein [Pseudomonas aeruginosa LESB58] gi|254239310|ref|ZP_04932633.1| hypothetical protein PACG_05506 [Pseudomonas aeruginosa C3719] gi|9946868|gb|AAG04350.1|AE004530_3 probable cold-shock protein [Pseudomonas aeruginosa PAO1] gi|126171241|gb|EAZ56752.1| hypothetical protein PACG_05506 [Pseudomonas aeruginosa C3719] gi|218773296|emb|CAW29108.1| probable cold-shock protein [Pseudomonas aeruginosa LESB58] Length = 63 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 6/64 (9%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 1 MKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDKG--LQ 54 Query: 67 AENL 70 AE++ Sbjct: 55 AEDV 58 >gi|88606701|ref|YP_504760.1| CSD family cold shock protein [Anaplasma phagocytophilum HZ] gi|88597764|gb|ABD43234.1| cold shock protein, CSD family [Anaplasma phagocytophilum HZ] Length = 89 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 10/81 (12%) Query: 3 HRGSIKWYNPDKGYGFITPEGST--------ESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +KW++ +KGYGFI + S DVF+H +++ + + NL EGQ V Y Sbjct: 11 YTGHVKWFSVEKGYGFICKDSSEGSKGSAMGHGEKDVFVHITSLQRSRIDNLREGQKVRY 70 Query: 55 DYVQNDANGKYSAENLKLVPK 75 +N NGK SA NL+++ + Sbjct: 71 QLDEN--NGKVSAVNLEVLSE 89 >gi|268315694|ref|YP_003289413.1| cold-shock DNA-binding domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333228|gb|ACY47025.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM 4252] Length = 76 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 6/79 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQN 59 M RG +KW+N DKGYGFI P + DVF+HR+ V G L EG+ V+Y+ + Sbjct: 1 MAQRGRVKWFNIDKGYGFIEP---NDGSKDVFVHRNNVPGLGWDEGLREGEEVSYEVERT 57 Query: 60 DANGKYSAENLKLVPKSSN 78 SA N++ + +SS Sbjct: 58 PKG--LSAMNVERLSRSSE 74 >gi|57239424|ref|YP_180560.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str. Welgevonden] gi|58579396|ref|YP_197608.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str. Welgevonden] gi|58617451|ref|YP_196650.1| putative cold shock-like protein cspA [Ehrlichia ruminantium str. Gardel] gi|57161503|emb|CAH58429.1| hypothetical protein Erum6970 [Ehrlichia ruminantium str. Welgevonden] gi|58417063|emb|CAI28176.1| Putative Cold shock-like protein cspA [Ehrlichia ruminantium str. Gardel] gi|58418022|emb|CAI27226.1| Putative Cold shock-like protein cspA [Ehrlichia ruminantium str. Welgevonden] Length = 95 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 8/79 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTE------SGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G +KW++ +KGYGFI + + D+F+H +A+ + + L EGQ V Y Sbjct: 18 IYTGYVKWFSSEKGYGFIRKDHGDKVKNIGQDVKDIFVHITALQKSRISELKEGQKVKYQ 77 Query: 56 YVQNDANGKYSAENLKLVP 74 + NGK+SA NL+++ Sbjct: 78 L--DKNNGKFSAINLEVLE 94 >gi|78777701|ref|YP_394016.1| cold-shock DNA-binding domain-containing protein [Sulfurimonas denitrificans DSM 1251] gi|78498241|gb|ABB44781.1| cold-shock DNA-binding protein family [Sulfurimonas denitrificans DSM 1251] Length = 72 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 7/71 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQNDAN 62 GS+KW+N +KGYGFI E G DVF+H V G +L+EGQ VT++ + Sbjct: 7 GSVKWFNEEKGYGFIQQE---NGGKDVFVHFRQVNRTGPGRVSLSEGQKVTFELGEGQKG 63 Query: 63 GKYSAENLKLV 73 AEN+ + Sbjct: 64 --PQAENVTPL 72 >gi|260889081|ref|ZP_05900344.1| conserved domain protein [Leptotrichia hofstadii F0254] gi|260861141|gb|EEX75641.1| conserved domain protein [Leptotrichia hofstadii F0254] Length = 75 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI+ E G+D FLH S + G + EG+ V++D V+ G Sbjct: 13 GKVKWFNDKKGFGFIS----GEDGNDYFLHFSKINKEGFKTVNEGEEVSFD-VEEGPKGP 67 Query: 65 YSAENLK 71 + + Sbjct: 68 QATNVIS 74 >gi|312883792|ref|ZP_07743511.1| cold shock protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368541|gb|EFP96074.1| cold shock protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 69 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI+ E S DD+F+H + G L EG V++ + Sbjct: 7 GTVKWFNETKGFGFISQENS----DDLFVHFRNILGDGFKKLVEGDKVSFTVGRGPKG-- 60 Query: 65 YSAENLKLV 73 AEN+ + Sbjct: 61 LQAENVTTI 69 >gi|254298844|ref|ZP_04966294.1| cold-shock domain family protein [Burkholderia pseudomallei 406e] gi|157809241|gb|EDO86411.1| cold-shock domain family protein [Burkholderia pseudomallei 406e] Length = 52 Score = 83.8 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 + G +KW+N KG+GFIT + G+D+F H S + G L E Q V+ Sbjct: 1 MDTGIVKWFNDAKGFGFITSD---NGGEDLFAHFSEIRMEGFKTLKENQRVS 49 >gi|307720566|ref|YP_003891706.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica DSM 16294] gi|306978659|gb|ADN08694.1| cold-shock DNA-binding protein family [Sulfurimonas autotrophica DSM 16294] Length = 72 Score = 83.5 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQN 59 + GS+KW+N +KGYGFI + G DVF+H V + G +L EGQ VT++ + Sbjct: 4 LQDGSVKWFNDEKGYGFIQQD---NGGKDVFVHFRQVNNNGGGRVSLAEGQRVTFEVGEG 60 Query: 60 DANGKYSAENLKLV 73 AEN+ + Sbjct: 61 QKG--PQAENVTPL 72 >gi|331703045|ref|YP_004399732.1| Cold shock protein [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256383681|gb|ACU78251.1| cold-shock DNA-binding domain, putative [Mycoplasma mycoides subsp. capri str. GM12] gi|256384512|gb|ACU79081.1| cold-shock DNA-binding domain, putative [Mycoplasma mycoides subsp. capri str. GM12] gi|296456011|gb|ADH22246.1| cold-shock DNA-binding domain, putative [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328801600|emb|CBW53753.1| Cold shock protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 69 Score = 83.5 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFIT + DVF++ S + G L +GQ VTY+ + Sbjct: 1 MNTGIVKWFNDEKGFGFITNDS---DNKDVFVYFSNINVNGYKTLEQGQKVTYELNKGIK 57 Query: 62 NGKYSAENLKL 72 A N+ + Sbjct: 58 G--LEAFNVSI 66 >gi|145347619|ref|XP_001418260.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578489|gb|ABO96553.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 106 Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N KG+GFI P + +++F+H++ ++ AG ++ EG+ V YD D Sbjct: 6 RGKVKWFNATKGFGFIIPH---DGSEEIFVHQTGISCAGFRSVWEGEEVEYDVDDTDFAP 62 Query: 64 KYSAENLK 71 K A N+ Sbjct: 63 K--AVNVT 68 >gi|284989393|ref|YP_003407947.1| cold-shock DNA-binding domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284062638|gb|ADB73576.1| cold-shock DNA-binding domain protein [Geodermatophilus obscurus DSM 43160] Length = 131 Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+NP+KG+GF++ E G DVF+H+ A+ +G L GQ V + V Sbjct: 1 MPTGRVKWFNPEKGFGFLSRE----DGPDVFVHKDAL-PSGTSELKPGQRVEFGIVAGRR 55 Query: 62 NGKYSAENLKLVPK 75 A ++++ Sbjct: 56 G--DQALQVRVLDP 67 >gi|94264655|ref|ZP_01288437.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1] gi|93454886|gb|EAT05130.1| Cold-shock protein, DNA-binding [delta proteobacterium MLMS-1] Length = 70 Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG+GFI E + DVF+H + G +L +GQ V + V+ Sbjct: 6 NGKVKWFNAPKGFGFIERENDS----DVFVHYRGIKGDGYRSLQDGQEVIFSVVETPKG- 60 Query: 64 KYSAENLKLV 73 AE ++++ Sbjct: 61 -LQAEEVEVI 69 >gi|288959216|ref|YP_003449557.1| cold shock protein [Azospirillum sp. B510] gi|288911524|dbj|BAI73013.1| cold shock protein [Azospirillum sp. B510] Length = 186 Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N DKG+GFITP + G DVF+H + + +G+ L EG V Q Sbjct: 123 GTVKWFNADKGFGFITP---STGGKDVFVHVNVLRRSGMQTLQEGDQVRVTVRQGQKGP 178 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 ++KW+NP KG+GF++PE + D FLH SAV +AG L EG +T D + Sbjct: 21 TATVKWFNPTKGFGFVSPE---DGSPDAFLHVSAVQAAGYDALDEGTTITCDLARGPKGP 77 Query: 64 KYS 66 + + Sbjct: 78 QVA 80 >gi|83814746|ref|YP_445845.1| hypothetical protein SRU_1727 [Salinibacter ruber DSM 13855] gi|294507754|ref|YP_003571812.1| cold shock-like protein [Salinibacter ruber M8] gi|83756140|gb|ABC44253.1| conserved domain protein [Salinibacter ruber DSM 13855] gi|294344082|emb|CBH24860.1| cold shock-like protein [Salinibacter ruber M8] Length = 71 Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++KW++ +KGYGFI E E D+F+H S + + G +L E V + D Sbjct: 4 RETGTVKWFSNEKGYGFIVAEDRDE---DLFVHYSEIDTEGFKSLDEDDRVEFTVGHTDK 60 Query: 62 NGKYSAENLKLV 73 +A+++ ++ Sbjct: 61 G--PNAQDVVVI 70 >gi|329941396|ref|ZP_08290675.1| cold shock protein B [Streptomyces griseoaurantiacus M045] gi|329299927|gb|EGG43826.1| cold shock protein B [Streptomyces griseoaurantiacus M045] Length = 127 Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V AG+ L GQ V + V Sbjct: 1 MPTGKVKWFNGEKGFGFLSRD----DGGDVFVH-SSVLPAGVDALKPGQRVEFGVV-AGQ 54 Query: 62 NGKYSAENLKLVPKSS 77 G + + L P S Sbjct: 55 RGDQALSVVLLEPAPS 70 >gi|54295674|ref|YP_128089.1| hypothetical protein lpl2762 [Legionella pneumophila str. Lens] gi|296108496|ref|YP_003620197.1| Hypothetical Cold shock protein [Legionella pneumophila 2300/99 Alcoy] gi|53755506|emb|CAH17005.1| hypothetical protein lpl2762 [Legionella pneumophila str. Lens] gi|295650398|gb|ADG26245.1| Hypothetical Cold shock protein [Legionella pneumophila 2300/99 Alcoy] gi|307611722|emb|CBX01423.1| hypothetical protein LPW_31131 [Legionella pneumophila 130b] Length = 71 Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N DKGYGFI+ + + DVF+H ++ SAG L EGQ V + V A Sbjct: 5 ETGHVKWFNDDKGYGFISRDNGQD---DVFVHFRSIVSSAGRKTLLEGQRVEF-LVTKGA 60 Query: 62 NGKYSAENLKL 72 G + E + Sbjct: 61 KGLQAEEVTAI 71 >gi|49082320|gb|AAT50560.1| PA0961 [synthetic construct] Length = 64 Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 6/64 (9%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFI+ + SG+D+F+H A+ G L EGQ V + VQ D Sbjct: 1 MKWFNTSKGFGFISRD----SGEDIFVHFRAIRGEGHRILIEGQRVEFSVVQRDKG--LQ 54 Query: 67 AENL 70 AE++ Sbjct: 55 AEDV 58 >gi|52841294|ref|YP_095093.1| cold shock domain-contain protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628405|gb|AAU27146.1| cold shock domain family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 87 Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + + Sbjct: 20 RGKVKWFNKDKGFGFIE-----SSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKG- 73 Query: 64 KYSAENLKLVP 74 AE ++++ Sbjct: 74 -PQAEEVEVIK 83 >gi|307327750|ref|ZP_07606934.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306886648|gb|EFN17650.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 127 Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GF++ + G DVF+H S+V G+ L GQ V + V + Sbjct: 1 MPTGKVKWFNSEKGFGFLSRD----DGGDVFVH-SSVLPEGVDALKPGQRVEFGVVAGNR 55 Query: 62 NGKYSAENLKLVPKS 76 A ++ ++ + Sbjct: 56 G--DQALSVTVLDPT 68 >gi|52843046|ref|YP_096845.1| cold shock transcriptional regulator CspA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630157|gb|AAU28898.1| cold shock transcriptional regulator CspA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 71 Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQNDA 61 G +KW+N DKGYGFI+ + + DVF+H ++ S AG L EGQ V + V A Sbjct: 5 ETGHVKWFNDDKGYGFISRDNGQD---DVFVHFRSIVSNAGRKTLLEGQRVEF-LVTKGA 60 Query: 62 NGKYSAENLKL 72 G + E + Sbjct: 61 KGLQAEEVTAI 71 >gi|317154064|ref|YP_004122112.1| Cold-shock protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316944315|gb|ADU63366.1| Cold-shock protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 76 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G + W+N KG+GFIT + G DVF+H + + G +L G+ V+Y + Sbjct: 1 MRREGKVTWFNDKKGFGFITGD----DGLDVFVHYTEIVRDGFQSLEPGERVSYAVTDEE 56 Query: 61 ANGKYSAENLKLVPKSS 77 K A ++ L + + Sbjct: 57 IAPK--AVDVHLADEGA 71 >gi|71983225|ref|NP_492281.2| abnormal cell LINeage family member (lin-28) [Caenorhabditis elegans] gi|6434276|emb|CAB61009.1| C. elegans protein F02E9.2b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 196 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + + G+D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 24 GSCKWFNVSKGYGFVIDDIT---GEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 79 >gi|54298841|ref|YP_125210.1| hypothetical protein lpp2908 [Legionella pneumophila str. Paris] gi|53752626|emb|CAH14061.1| hypothetical protein lpp2908 [Legionella pneumophila str. Paris] Length = 71 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N DKGYGFI+ + + DVF+H ++ SAG L EGQ V + V A Sbjct: 5 ETGHVKWFNDDKGYGFISRDNGQD---DVFVHFRSIVSSAGRKTLVEGQRVEF-LVTKGA 60 Query: 62 NGKYSAENLKL 72 G + E + Sbjct: 61 KGLQAEEVTAI 71 >gi|118589651|ref|ZP_01547056.1| Cold-shock DNA-binding domain protein [Stappia aggregata IAM 12614] gi|118437737|gb|EAV44373.1| Cold-shock DNA-binding domain protein [Stappia aggregata IAM 12614] Length = 66 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ +G G I P + G+D+ + SA+ +G+ LTEGQLV +D Sbjct: 1 MLHGNVKWFDNRRGIGTIEP----QDGEDILVDISALRRSGIDTLTEGQLVAFDLEW--R 54 Query: 62 NGKYSAENLKLV 73 G+ AE+LK++ Sbjct: 55 RGQMVAEDLKVL 66 >gi|71983217|ref|NP_001021085.1| abnormal cell LINeage family member (lin-28) [Caenorhabditis elegans] gi|74961916|sp|P92186|LIN28_CAEEL RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage protein 28 gi|1763342|gb|AAB49759.1| Lin-28 [Caenorhabditis elegans] gi|1763344|gb|AAC47476.1| LIN-28 [Caenorhabditis elegans] gi|6434275|emb|CAB61008.1| C. elegans protein F02E9.2a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 227 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + + G+D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 55 GSCKWFNVSKGYGFVIDDIT---GEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110 >gi|199598150|ref|ZP_03211572.1| Cold shock protein [Lactobacillus rhamnosus HN001] gi|258508287|ref|YP_003171038.1| cold shock protein [Lactobacillus rhamnosus GG] gi|258539501|ref|YP_003174000.1| Cold shock protein [Lactobacillus rhamnosus Lc 705] gi|199590911|gb|EDY98995.1| Cold shock protein [Lactobacillus rhamnosus HN001] gi|257148214|emb|CAR87187.1| Cold shock protein [Lactobacillus rhamnosus GG] gi|257151177|emb|CAR90149.1| Cold shock protein [Lactobacillus rhamnosus Lc 705] gi|259649604|dbj|BAI41766.1| cold shock protein [Lactobacillus rhamnosus GG] Length = 74 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K +N DKGYGFI EG D+F+H SA+ +G +LT G+ V + V+ G Sbjct: 2 QGRVKNFNVDKGYGFIEAEGQ----PDIFVHFSAINESGFKSLTPGEQVDFVIVEG-PRG 56 Query: 64 KYSAEN 69 +A Sbjct: 57 PQAANV 62 >gi|134097204|ref|YP_001102865.1| cold-shock DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291005339|ref|ZP_06563312.1| cold shock protein [Saccharopolyspora erythraea NRRL 2338] gi|133909827|emb|CAL99939.1| cold-shock DNA-binding domain protein [Saccharopolyspora erythraea NRRL 2338] Length = 130 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ +KG+GF+T + G+DV++ SA+ +G+ +L GQ V +D Q Sbjct: 1 MPTGRVKWFDAEKGFGFVTQD----GGEDVYVRASAL-PSGVESLKTGQRVDFDMAQG-R 54 Query: 62 NGKYSAENLKLVPKSS 77 G + + L P S Sbjct: 55 RGPQALKVQLLDPPPS 70 >gi|167753531|ref|ZP_02425658.1| hypothetical protein ALIPUT_01806 [Alistipes putredinis DSM 17216] gi|167658156|gb|EDS02286.1| hypothetical protein ALIPUT_01806 [Alistipes putredinis DSM 17216] Length = 66 Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KGYGFIT E G +VF+H S + S L EGQ V ++ N A G Sbjct: 2 TGQVKWFDSKKGYGFITRE----DGKEVFVHFSGIVSDSFKTLNEGQKVAFELG-NGAKG 56 Query: 64 KYSAENLKLVP 74 A N+ ++ Sbjct: 57 -EQAINVTVIE 66 >gi|254458182|ref|ZP_05071608.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales bacterium GD 1] gi|207085018|gb|EDZ62304.1| 'Cold-shock' DNA-binding domain, putative [Campylobacterales bacterium GD 1] Length = 72 Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 7/71 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA--SAGLFNLTEGQLVTYDYVQNDAN 62 GS+KW+N +KGYGFI + G DVF+H V G +L EGQ VTY+ + Sbjct: 7 GSVKWFNEEKGYGFIQQD---NGGQDVFVHFRQVNHTGGGRVSLAEGQKVTYEVGEGQKG 63 Query: 63 GKYSAENLKLV 73 AEN+ + Sbjct: 64 --PQAENVTPL 72 >gi|268568282|ref|XP_002640209.1| C. briggsae CBR-LIN-28 protein [Caenorhabditis briggsae] Length = 219 Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 55 GSCKWFNVSKGYGFVIDD---NTGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110 >gi|219855908|ref|YP_002473030.1| hypothetical protein CKR_2565 [Clostridium kluyveri NBRC 12016] gi|219569632|dbj|BAH07616.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 66 Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 ++ G++KW+N +KG+G IT E G D+F H S + S G L EGQ V++D Sbjct: 15 LIWTGTVKWFNGNKGFGSIT----GEDGKDIFAHFSQINSEGYKTLGEGQKVSFD 65 >gi|71083183|ref|YP_265902.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1062] gi|91762387|ref|ZP_01264352.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1002] gi|71062296|gb|AAZ21299.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1062] gi|91718189|gb|EAS84839.1| cold shock protein [Candidatus Pelagibacter ubique HTCC1002] Length = 70 Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG+GFI E D F+H SAV +AG+ L EG + ++ ++ G Sbjct: 5 KGTVKWFNGKKGFGFIEREDKE---KDAFVHASAVKTAGMRFLNEGDKLEFEM-EDGPKG 60 Query: 64 KYSAENLKLV 73 SA NLK + Sbjct: 61 P-SAVNLKKI 69 >gi|326692723|ref|ZP_08229728.1| Possible Cold-shock DNA-binding domain protein [Leuconostoc argentinum KCTC 3773] Length = 74 Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K + ++GYG+ITP+ E G DV++H + + G +L +G+ V+Y VQ Sbjct: 1 MKTGTVKIWQKERGYGYITPD---EGGADVYVHFNGIDMDGFKSLNQGERVSYVLVQGYK 57 Query: 62 NGKYSAENLKLVPKSSN 78 + +AE ++ K+S Sbjct: 58 D-YQAAEVRPIMKKASE 73 >gi|295110047|emb|CBL24000.1| cold-shock DNA-binding protein family [Ruminococcus obeum A2-162] Length = 75 Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 5/73 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW++ KGYGFIT E G D F H S + G L+ GQ V ++ DANG+ Sbjct: 8 TVKWFSAQKGYGFIT----GEDGIDYFAHFSEIQMDGYRKLSGGQPVLFEAG-TDANGRS 62 Query: 66 SAENLKLVPKSSN 78 A+N+ ++ Sbjct: 63 LAKNISPADPNAE 75 >gi|172055299|ref|YP_001806626.1| putative cold shock protein, DNA-binding [Cyanothece sp. ATCC 51142] gi|171701580|gb|ACB54560.1| putative cold shock protein, DNA-binding [Cyanothece sp. ATCC 51142] Length = 64 Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW++ KGYGFI + G+D+F+H S V S +L EGQ V Y+ Q Sbjct: 1 MAQGQVKWFDTQKGYGFIAQ---QDGGEDLFVHYSEVQSQ---SLEEGQTVEYEVGQGRK 54 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 55 G--PCAVNVRTI 64 >gi|301061696|ref|ZP_07202437.1| cold shock protein CspD [delta proteobacterium NaphS2] gi|300444156|gb|EFK08180.1| cold shock protein CspD [delta proteobacterium NaphS2] Length = 62 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 5/65 (7%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 KW++ KG+GFI+ E G D+F+H + + G L+EG V+++ ++D G + Sbjct: 3 KWFSDRKGFGFISQE----DGQDLFVHHTGIDMPGFKTLSEGDRVSFEIEESD-RGPKAK 57 Query: 68 ENLKL 72 +KL Sbjct: 58 NVVKL 62 >gi|154244150|ref|YP_001415108.1| cold-shock DNA-binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154158235|gb|ABS65451.1| putative cold-shock DNA-binding domain protein [Xanthobacter autotrophicus Py2] Length = 241 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KWYNPDKG+GFI EG G DVF+H + ++ +GL +L EGQ V Q G Sbjct: 177 GTVKWYNPDKGFGFIAVEG---GGKDVFVHVTVISRSGLTDLAEGQRVVVQVGQG-PKGP 232 Query: 65 YS 66 + Sbjct: 233 EA 234 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+NP+KG+GF+ + DVFLH A+ +AG ++ G ++ Q G+ Sbjct: 68 TVKWFNPEKGFGFVE---LADGSGDVFLHARALEAAGQESVPPGSKLSVRVGQGQ-KGRQ 123 Query: 66 SAENLKLVPKSSN 78 E L++ ++ Sbjct: 124 VTEVLEVDTSTAE 136 >gi|323343048|ref|ZP_08083279.1| CspA family cold shock transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463112|gb|EFY08307.1| CspA family cold shock transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 66 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N DKG+GFI T+SG ++F+H S + S G L +G +VT+D + Sbjct: 1 MESGKVKFFNADKGFGFII----TDSGKEIFVHYSGIISDGFKTLNDGDVVTFDIESDTR 56 Query: 62 NGKYSAENLKL 72 K A N+K+ Sbjct: 57 GDK--AINVKV 65 >gi|74961778|sp|P91599|LIN28_CAERE RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage protein 28 gi|1763346|gb|AAC47477.1| LIN-28 [Caenorhabditis remanei] Length = 214 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + + E D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 51 GSCKWFNVSKGYGFVIDDITRE---DLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 106 >gi|288962305|ref|YP_003452600.1| cold shock protein [Azospirillum sp. B510] gi|288914571|dbj|BAI76056.1| cold shock protein [Azospirillum sp. B510] Length = 203 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI P + G D+F+H A+ +G+ L +G V Q A G Sbjct: 140 GTVKWFNVSKGFGFIAP---STGGKDIFVHIRALERSGISGLDDGAQVRVTIRQG-AKGP 195 Query: 65 YS 66 + Sbjct: 196 EA 197 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 R ++KW+N KG+GF+TP+ + D FLH + + G +L EG +T D + G Sbjct: 21 RATVKWFNATKGFGFVTPD---DGSPDAFLHSTVLQFCGHDSLPEGATITCDLSRG-PKG 76 Query: 64 KYSA 67 A Sbjct: 77 PQVA 80 >gi|254496781|ref|ZP_05109636.1| cold shock domain-contain protein [Legionella drancourtii LLAP12] gi|254354006|gb|EET12686.1| cold shock domain-contain protein [Legionella drancourtii LLAP12] Length = 68 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N KG+GFI SG D F+H SA+ S+G L EG V + + Sbjct: 6 RGKVKWFNESKGFGFIE-----NSGKDYFVHFSAIQSSGFKTLPEGANVLFKAGKGQKG- 59 Query: 64 KYSAENLKLV 73 AE ++L+ Sbjct: 60 -PQAEEVELI 68 >gi|83814543|ref|YP_446197.1| hypothetical protein SRU_2091 [Salinibacter ruber DSM 13855] gi|294508125|ref|YP_003572183.1| cold shock-like protein [Salinibacter ruber M8] gi|83755937|gb|ABC44050.1| conserved domain protein [Salinibacter ruber DSM 13855] gi|294344453|emb|CBH25231.1| putative cold shock-like protein [Salinibacter ruber M8] Length = 110 Score = 81.9 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60 + ++KW++ KGYGFI + G+DVF+H S + S L Q V ++ + Sbjct: 1 MRTSTVKWFDAKKGYGFI---HHPDDGEDVFVHYSNIQSDDDFKTLKSDQHVRFEM-NDG 56 Query: 61 ANGKYSAENLKLVPKSS 77 G ++ E L + + Sbjct: 57 PKGLHALEVAPLDDEEA 73 >gi|42560588|ref|NP_975039.1| cold shock protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492084|emb|CAE76681.1| COLD SHOCK PROTEIN [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 69 Score = 81.9 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G +KW+N +KG+GFIT + DVF++ S + G L +GQ VTY+ + Sbjct: 1 MNTGIVKWFNDEKGFGFITNDS---DNKDVFVYYSNINVNGYKALEQGQKVTYELNKGIK 57 Query: 62 NGKYSAENLKL 72 A N+ + Sbjct: 58 G--LEAFNVSI 66 >gi|193214431|ref|YP_001995630.1| cold-shock DNA-binding domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193087908|gb|ACF13183.1| cold-shock DNA-binding domain protein [Chloroherpeton thalassium ATCC 35110] Length = 73 Score = 81.9 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 6/76 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQN 59 M HR ++KW++ KGYGFI + E G+D+F+H SA++S L +G V ++ V Sbjct: 1 MAHRSNVKWFDGKKGYGFIV---NPEGGEDIFVHYSAISSEKKYKMLDQGVEVEFELVTT 57 Query: 60 DANGKYSAENLKLVPK 75 D A+N++ + + Sbjct: 58 DKG--LQAQNVREISE 71 >gi|251771202|gb|EES51783.1| putative cold-shock DNA-binding domain protein [Leptospirillum ferrodiazotrophum] Length = 320 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +K YNPDKGYG I + G ++F+H SA+ + GL L GQ V ++ Sbjct: 1 MPKGRVKAYNPDKGYGTI----LLDDGQEIFVHGSAIQTDGLKVLEAGQRVRFEIAMG-P 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 QGPLAANV 63 >gi|301066334|ref|YP_003788357.1| cold shock protein [Lactobacillus casei str. Zhang] gi|300438741|gb|ADK18507.1| Cold shock protein [Lactobacillus casei str. Zhang] Length = 73 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K +N DKGYGFI EG D+F+H SA+ +G +LT G+ V + V+ G Sbjct: 2 QGRVKNFNVDKGYGFIEAEGQ----PDIFVHFSAINESGFKSLTPGETVDFVIVEG-PRG 56 Query: 64 KYSAEN 69 +A Sbjct: 57 PQAANV 62 >gi|167626580|ref|YP_001677080.1| cold-shock DNA-binding domain-containing protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667137|ref|ZP_04754715.1| cold-shock DNA-binding domain-containing protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875691|ref|ZP_05248401.1| cold shock protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167596581|gb|ABZ86579.1| putative cold-shock DNA-binding domain protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254841712|gb|EET20126.1| cold shock protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 67 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFITPE G DVF+H S + L EGQ VT++ Q G Sbjct: 6 QGTVKFFNDQKGFGFITPE---NGGKDVFVHISKLNGE---TLAEGQQVTFE-TQEGRKG 58 Query: 64 KYSAENLKLV 73 A N++++ Sbjct: 59 PE-AINIEVL 67 >gi|116248183|sp|Q61CX7|LIN28_CAEBR RecName: Full=Protein lin-28; AltName: Full=Abnormal cell lineage protein 28 gi|309371318|emb|CAP31656.3| CBR-LIN-28 protein [Caenorhabditis briggsae AF16] Length = 237 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + +G+D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 55 GSCKWFNVSKGYGFVIDD---NTGEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110 >gi|158425669|ref|YP_001526961.1| cold shock protein [Azorhizobium caulinodans ORS 571] gi|158332558|dbj|BAF90043.1| cold shock protein [Azorhizobium caulinodans ORS 571] Length = 237 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KWYNP+KG+GFI EG G DVF+H + V+ +GL +L+EGQ V Q G Sbjct: 173 GTVKWYNPEKGFGFIAVEG---GGKDVFVHVTVVSRSGLADLSEGQRVVVQVGQG-PKGP 228 Query: 65 YS 66 + Sbjct: 229 EA 230 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+NP+KG+GF+ ++ DVFLH A+ +AG ++ G ++ Q G+ Sbjct: 69 TVKWFNPEKGFGFVE---LSDGSGDVFLHARALEAAGQESVPPGSKLSVRVGQGQ-KGRQ 124 Query: 66 SAENLKLVPKSSN 78 E L++ ++ Sbjct: 125 VTEVLEVDTSTAE 137 >gi|322832238|ref|YP_004212265.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] gi|321167439|gb|ADW73138.1| cold-shock DNA-binding domain protein [Rahnella sp. Y9602] Length = 70 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G +KWYN KGYGFI P + ++++ R+++A+ G +L+ GQ V + ++ Sbjct: 2 MLKMGLVKWYNQAKGYGFICP---LDGSSEIYVQRTSIANTGNKSLSAGQKVEFTTYRSV 58 Query: 61 ANGKYSAENL 70 +G +A+ + Sbjct: 59 THGPSAADVI 68 >gi|320095150|ref|ZP_08026858.1| cold shock domain protein CspD [Actinomyces sp. oral taxon 178 str. F0338] gi|319977932|gb|EFW09567.1| cold shock domain protein CspD [Actinomyces sp. oral taxon 178 str. F0338] Length = 69 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 5/73 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60 + G +KW+N KG+GFI P+ T DVF+H S++ +G L EG V Y V+ Sbjct: 1 MASGHVKWFNDAKGFGFIIPDDQT---GDVFVHFSSIVGQSGRRTLQEGDKVDYVAVEG- 56 Query: 61 ANGKYSAENLKLV 73 G ++ E ++V Sbjct: 57 PRGLHAEEVSRVV 69 >gi|270157314|ref|ZP_06185971.1| cold shock protein CspB [Legionella longbeachae D-4968] gi|289164302|ref|YP_003454440.1| stress protein, member of the CspA-family [Legionella longbeachae NSW150] gi|269989339|gb|EEZ95593.1| cold shock protein CspB [Legionella longbeachae D-4968] gi|288857475|emb|CBJ11305.1| stress protein, member of the CspA-family [Legionella longbeachae NSW150] Length = 68 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N KG+GFI SG D F+H SA+ S+G +L EG V + + Sbjct: 6 RGKVKWFNESKGFGFIE-----NSGKDYFVHFSAIQSSGFKSLPEGANVLFKAGKGQKG- 59 Query: 64 KYSAENLKLV 73 AE ++L+ Sbjct: 60 -PQAEEIELI 68 >gi|239980769|ref|ZP_04703293.1| cold-shock domain-containing protein [Streptomyces albus J1074] gi|291452626|ref|ZP_06592016.1| cold-shock domain-containing protein [Streptomyces albus J1074] gi|291355575|gb|EFE82477.1| cold-shock domain-containing protein [Streptomyces albus J1074] Length = 67 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++P +G+GFIT +G G DVF H S +A+ L EGQ VT+D V + Sbjct: 1 MASGTVKWFHPARGFGFITQDG---GGADVFAHFSNIAAQDSLELLEGQKVTFDIVMSPK 57 Query: 62 NGKYSAENL 70 +AEN+ Sbjct: 58 G--PTAENI 64 >gi|145356187|ref|XP_001422318.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582559|gb|ABP00635.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 76 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N KG+GFITP + +++F+H++ ++ AG + E + V Y+ ++A+G Sbjct: 1 RGKVKWFNVTKGFGFITPH---DGSEEIFVHQTGISRAGFRSAWEDEEVEYEV--SNADG 55 Query: 64 KYSAENLK 71 + A N+ Sbjct: 56 RPVAVNVT 63 >gi|300787569|ref|YP_003767860.1| cold shock protein CspA [Amycolatopsis mediterranei U32] gi|299797083|gb|ADJ47458.1| cold shock protein CspA [Amycolatopsis mediterranei U32] Length = 315 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 6/77 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 + +G+++W++ ++G+GF+ PE + DVF+H S + G L EGQ V ++ +ND Sbjct: 1 MPQGTVRWFDAERGFGFLAPE---DDSPDVFVHASEIVGDGGAKVLREGQAVVFEVGEND 57 Query: 61 ANGKYSAENLKLVPKSS 77 A +++ ++ Sbjct: 58 RG--PQALRVRVTADAA 72 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 6/68 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+I WY P KGYGF +P+G G D+F+H SA+ + G+ EGQ V + V+ + G Sbjct: 81 GTINWYEPGKGYGFASPDG---GGADIFVHSSAIVTGGVVT--EGQRVAFLIVEGE-RGP 134 Query: 65 YSAENLKL 72 + + L Sbjct: 135 QAGHVIPL 142 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++ WY+ DKG+GFI P+ DVF+H A+A GL L EG V Y+ D Sbjct: 161 TVAWYDEDKGFGFINPDS---GAGDVFVHARALA-EGLTWLAEGDRVAYEVASGDKG--P 214 Query: 66 SAENLKLV 73 A ++ LV Sbjct: 215 QARDVHLV 222 Score = 54.2 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + Y+ D+G+GFITP+ GDD+F H S + + L +G V Y Q+D Sbjct: 253 EGVVARYDGDRGFGFITPDA---GGDDLFAHASVIMGS--EPLQKGDRVRYAVRQSDRGP 307 Query: 64 K 64 + Sbjct: 308 Q 308 >gi|227487248|ref|ZP_03917564.1| CspA family cold shock transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227541584|ref|ZP_03971633.1| CspA family cold shock transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227092906|gb|EEI28218.1| CspA family cold shock transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227182552|gb|EEI63524.1| CspA family cold shock transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 67 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G+++W+NP+ GYGFI + ESG D+F+ S + AG L E Q V Y ++ Sbjct: 1 MAQGTVRWFNPESGYGFIIDD---ESGQDLFVRYSDIEGAGFRTLQENQRVDYFVMEGPK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|56707540|ref|YP_169436.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU S4] gi|89255867|ref|YP_513229.1| cold shock protein [Francisella tularensis subsp. holarctica LVS] gi|110670011|ref|YP_666568.1| cold shock protein [Francisella tularensis subsp. tularensis FSC198] gi|115314356|ref|YP_763079.1| cold shock protein [Francisella tularensis subsp. holarctica OSU18] gi|118497088|ref|YP_898138.1| cold shock protein [Francisella tularensis subsp. novicida U112] gi|134302526|ref|YP_001122496.1| cold shock protein [Francisella tularensis subsp. tularensis WY96-3418] gi|156501851|ref|YP_001427916.1| cold-shock DNA-binding domain-containing protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010093|ref|ZP_02275024.1| hypothetical protein Ftulh_05064 [Francisella tularensis subsp. holarctica FSC200] gi|187931344|ref|YP_001891328.1| cold shock protein, DNA-binding [Francisella tularensis subsp. mediasiatica FSC147] gi|194323385|ref|ZP_03057162.1| cold-shock' DNA-binding domain, putative [Francisella tularensis subsp. novicida FTE] gi|208778881|ref|ZP_03246227.1| cold-shock' DNA-binding domain protein, putative [Francisella novicida FTG] gi|224456609|ref|ZP_03665082.1| cold shock protein, DNA-binding [Francisella tularensis subsp. tularensis MA00-2987] gi|254367231|ref|ZP_04983259.1| cold shock protein [Francisella tularensis subsp. holarctica 257] gi|254368706|ref|ZP_04984719.1| cold shock protein [Francisella tularensis subsp. holarctica FSC022] gi|254370063|ref|ZP_04986069.1| cold shock protein [Francisella tularensis subsp. tularensis FSC033] gi|254372452|ref|ZP_04987941.1| hypothetical protein FTCG_00012 [Francisella tularensis subsp. novicida GA99-3549] gi|254373914|ref|ZP_04989396.1| cold shock DNA binding protein [Francisella novicida GA99-3548] gi|254874358|ref|ZP_05247068.1| cold shock protein cspC [Francisella tularensis subsp. tularensis MA00-2987] gi|290953337|ref|ZP_06557958.1| cold shock protein, DNA-binding [Francisella tularensis subsp. holarctica URFT1] gi|295313426|ref|ZP_06804032.1| cold shock protein, DNA-binding [Francisella tularensis subsp. holarctica URFT1] gi|56604032|emb|CAG45024.1| cold shock protein [Francisella tularensis subsp. tularensis SCHU S4] gi|89143698|emb|CAJ78897.1| cold shock protein [Francisella tularensis subsp. holarctica LVS] gi|110320344|emb|CAL08407.1| cold shock protein [Francisella tularensis subsp. tularensis FSC198] gi|115129255|gb|ABI82442.1| cold shock protein [Francisella tularensis subsp. holarctica OSU18] gi|118422994|gb|ABK89384.1| cold shock protein, DNA-binding [Francisella novicida U112] gi|134050303|gb|ABO47374.1| cold shock DNA binding protein [Francisella tularensis subsp. tularensis WY96-3418] gi|134253049|gb|EBA52143.1| cold shock protein [Francisella tularensis subsp. holarctica 257] gi|151568307|gb|EDN33961.1| cold shock protein [Francisella tularensis subsp. tularensis FSC033] gi|151570179|gb|EDN35833.1| hypothetical protein FTCG_00012 [Francisella novicida GA99-3549] gi|151571634|gb|EDN37288.1| cold shock DNA binding protein [Francisella novicida GA99-3548] gi|156252454|gb|ABU60960.1| 'Cold-shock' DNA-binding domain protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121627|gb|EDO65797.1| cold shock protein [Francisella tularensis subsp. holarctica FSC022] gi|187712253|gb|ACD30550.1| cold shock protein, DNA-binding [Francisella tularensis subsp. mediasiatica FSC147] gi|194322240|gb|EDX19721.1| cold-shock' DNA-binding domain, putative [Francisella tularensis subsp. novicida FTE] gi|208744681|gb|EDZ90979.1| cold-shock' DNA-binding domain protein, putative [Francisella novicida FTG] gi|254840357|gb|EET18793.1| cold shock protein cspC [Francisella tularensis subsp. tularensis MA00-2987] gi|282158694|gb|ADA78085.1| hypothetical protein NE061598_02185 [Francisella tularensis subsp. tularensis NE061598] gi|328675625|gb|AEB28300.1| Cold shock protein CspA [Francisella cf. novicida 3523] gi|328676549|gb|AEB27419.1| Cold shock protein CspA [Francisella cf. novicida Fx1] Length = 67 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFITPE G DVF+H S + L EGQ VT++ Q G Sbjct: 6 QGTVKFFNEQKGFGFITPE---NGGKDVFVHISKLNGE---TLAEGQQVTFE-TQEGRKG 58 Query: 64 KYSAENLKLV 73 A N++++ Sbjct: 59 PE-AINIEVL 67 >gi|154248094|ref|YP_001419052.1| cold-shock DNA-binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154162179|gb|ABS69395.1| putative cold-shock DNA-binding domain protein [Xanthobacter autotrophicus Py2] Length = 192 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GSIKW++ KGYGFI P+ + G DV +H + + G EG V + VQ A G Sbjct: 30 TGSIKWFDASKGYGFIVPD---DGGPDVLVHVTCLRRDGFQTAMEGARVVCEAVQR-AKG 85 Query: 64 KYSAENLKL 72 + + L L Sbjct: 86 RQAFRVLSL 94 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N +G+GF+T + D+F+H + GL L GQ V Y D G Sbjct: 123 TVKWFNRLRGFGFLTQ---GDGTPDIFVHMETLRRHGLTELRPGQTVMVRYGDGD-KGLM 178 Query: 66 SAEN 69 +AE Sbjct: 179 AAEV 182 >gi|52841437|ref|YP_095236.1| cold shock domain-contain protein CspA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628548|gb|AAU27289.1| cold shock domain family protein CspA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 79 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GFI + G+D+F+H + G L E VT++ + Sbjct: 6 RETGHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPK 61 Query: 62 NGKYSAENLKLVPKS 76 A+N+ + +S Sbjct: 62 G--LKAQNVVVASES 74 >gi|262276771|ref|ZP_06054564.1| conserved domain protein [alpha proteobacterium HIMB114] gi|262223874|gb|EEY74333.1| conserved domain protein [alpha proteobacterium HIMB114] Length = 68 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N KGYGFI E DVF+H SAV +G+ L EG +T++ + Sbjct: 1 MSIKGKVKWFNGTKGYGFIEREDKE---KDVFVHMSAVKDSGVGYLDEGDSLTFEIEEGK 57 Query: 61 ANGKYSAENLK 71 SA NLK Sbjct: 58 KG--PSAVNLK 66 >gi|116511520|ref|YP_808736.1| cold-shock DNA-binding protein family protein [Lactococcus lactis subsp. cremoris SK11] gi|125624636|ref|YP_001033119.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris MG1363] gi|116107174|gb|ABJ72314.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp. cremoris SK11] gi|124493444|emb|CAL98418.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris MG1363] gi|300071427|gb|ADJ60827.1| cold shock-like protein cspA [Lactococcus lactis subsp. cremoris NZ9000] Length = 66 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKGYGFI TE DVF + ++ G EGQ VT+D A Sbjct: 1 MINGTVKWFNMDKGYGFII----TEDMQDVFAYLLSIQGNGFKKYNEGQKVTFDVTMT-A 55 Query: 62 NGKYSAENLKL 72 G+Y++ K+ Sbjct: 56 RGRYASNIHKV 66 >gi|269125076|ref|YP_003298446.1| cold-shock DNA-binding domain-containing protein [Thermomonospora curvata DSM 43183] gi|268310034|gb|ACY96408.1| cold-shock DNA-binding domain protein [Thermomonospora curvata DSM 43183] Length = 135 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ KG+GF+T + G +VF+H SA+ +G+ +L GQ V + V+ Sbjct: 5 VPTGKVKWYDAGKGFGFLTRD----DGGEVFVHSSAL-PSGVTSLKTGQRVEFGVVEG-R 58 Query: 62 NGKYSAENLKLVP 74 G+ + L P Sbjct: 59 RGQQALSVRTLDP 71 >gi|162452081|ref|YP_001614448.1| cold shock protein [Sorangium cellulosum 'So ce 56'] gi|161162663|emb|CAN93968.1| cold shock protein [Sorangium cellulosum 'So ce 56'] Length = 68 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFI E G DVF+H S + G L E + V ++ + Sbjct: 1 MAVGKVKWFNDEKGWGFIKQET----GPDVFVHYSQINGEGRRRLFEDETVEFEIKEGPK 56 Query: 62 NGKYSAENL 70 A N+ Sbjct: 57 G--LQAVNV 63 >gi|328545164|ref|YP_004305273.1| cold shock-like transcription regulator protein [polymorphum gilvum SL003B-26A1] gi|326414906|gb|ADZ71969.1| Putative cold shock-like transcription regulator protein [Polymorphum gilvum SL003B-26A1] Length = 70 Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+IK++N D+G+GFITPE G DVF+H SA AGL EG VT+ ++D Sbjct: 1 MRENGTIKFFNYDRGFGFITPE---NGGKDVFVHISAFEQAGLPAPEEGAKVTF-VAEDD 56 Query: 61 ANGK-YSAENLKL 72 G+ A L+L Sbjct: 57 RRGRGKQAGQLEL 69 >gi|29377403|ref|NP_816557.1| cold-shock domain-contain protein [Enterococcus faecalis V583] gi|29344870|gb|AAO82627.1| cold-shock domain family protein [Enterococcus faecalis V583] Length = 67 Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K +N +GYGFI E G ++F+H++ + G L EGQ V Y+ + + Sbjct: 1 MKTGTVKSFNHKRGYGFII----AEDGSEIFVHQTGICMPGFRKLLEGQAVEYETAEYE- 55 Query: 62 NGKYSAENLKLVP 74 G+ A N+ ++ Sbjct: 56 -GRTKAVNVTVIE 67 >gi|268315810|ref|YP_003289529.1| cold-shock DNA-binding domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333344|gb|ACY47141.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM 4252] Length = 95 Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 RG +KW++ KGYGFI E G D+F+H S + S L GQ+V ++ + Sbjct: 3 ARRGVVKWFDAKKGYGFII---HPEGGADIFVHYSQIISERRFKTLRTGQIVEFELHEGP 59 Query: 61 ANGKYSAENLKLVPK 75 A N+ + + Sbjct: 60 KG--LHARNVVPLDE 72 >gi|330813601|ref|YP_004357840.1| cold shock protein CspA [Candidatus Pelagibacter sp. IMCC9063] gi|327486696|gb|AEA81101.1| cold shock protein CspA [Candidatus Pelagibacter sp. IMCC9063] Length = 68 Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N KGYGFI + DVF+H SAV +G+ L EG ++++D ++ Sbjct: 1 MSIKGKVKWFNGSKGYGFIERDDKE---KDVFVHMSAVKDSGVDYLDEGDVLSFDI-EDG 56 Query: 61 ANGKYSAENLK 71 G SA NLK Sbjct: 57 QKGP-SAVNLK 66 >gi|54023130|ref|YP_117372.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54014638|dbj|BAD56008.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 89 Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 6/76 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + G++ W++ KG+GFI P VF+ S++ +G L EGQ V + + Sbjct: 15 YHGTVAWFDAPKGFGFIEPAEGPRGP--VFVDFSSIEMSGYRTLVEGQPVRF----VRSA 68 Query: 63 GKYSAENLKLVPKSSN 78 G+ A ++ + ++ + Sbjct: 69 GRAEAVAVRPLAETGS 84 >gi|116617815|ref|YP_818186.1| cold-shock DNA-binding protein family protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432308|ref|ZP_03914301.1| cold shock protein Csp [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116096662|gb|ABJ61813.1| cold-shock DNA-binding protein family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227351914|gb|EEJ42147.1| cold shock protein Csp [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 74 Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K + ++GYG+ITP+ E GDDVF+H + + G +L +G+ V Y VQ Sbjct: 1 MKTGTVKIWQKERGYGYITPD---EGGDDVFVHFNGIDMDGFKSLIQGEKVAYVLVQGYK 57 Query: 62 NGKYSAENLKLVPKSS 77 + Y A ++ + + Sbjct: 58 S--YQAAQVRPLSVEA 71 >gi|172058435|ref|YP_001814895.1| cold-shock DNA-binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990956|gb|ACB61878.1| cold-shock DNA-binding domain protein [Exiguobacterium sibiricum 255-15] Length = 66 Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +KW+N +KGYGFI T DVF+H SA+ + G +L EG+ V ++ V D Sbjct: 1 MEQGKVKWFNAEKGYGFIE----TSDAKDVFVHFSAIQADGYKSLEEGEEVEFEIVDGD- 55 Query: 62 NGKYSAENLKL 72 G +A KL Sbjct: 56 RGPQAANVSKL 66 >gi|3850772|emb|CAA76694.1| cold shock protein A [Lactococcus lactis subsp. cremoris MG1363] Length = 66 Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N DKGYGFI TE DVF + ++ G EGQ VT+D A Sbjct: 1 MINGTVKWFNMDKGYGFII----TEDMQDVFAYLLSIQGNGFKKYNEGQKVTFDVTMT-A 55 Query: 62 NGKYSAENLKL 72 G+Y++ K+ Sbjct: 56 RGRYASNIDKV 66 >gi|308504936|ref|XP_003114651.1| CRE-LIN-28 protein [Caenorhabditis remanei] gi|308258833|gb|EFP02786.1| CRE-LIN-28 protein [Caenorhabditis remanei] Length = 208 Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + + E D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 24 GSCKWFNVSKGYGFVIDDITRE---DLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 79 >gi|257126384|ref|YP_003164498.1| cold-shock DNA-binding domain protein [Leptotrichia buccalis C-1013-b] gi|257050323|gb|ACV39507.1| cold-shock DNA-binding domain protein [Leptotrichia buccalis C-1013-b] Length = 65 Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI+ E G+D FLH S + G + EG+ V++D V+ G Sbjct: 3 GKVKWFNDKKGFGFIS----GEDGNDYFLHFSKINKEGFKTVNEGEEVSFD-VEEGPKGP 57 Query: 65 YSAENLK 71 + + Sbjct: 58 QATNVIS 64 >gi|227535230|ref|ZP_03965279.1| cold shock protein CspA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631631|ref|ZP_04674662.1| cold-shock DNA-binding family protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|227187114|gb|EEI67181.1| cold shock protein CspA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526096|gb|EEQ65097.1| cold-shock DNA-binding family protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 73 Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K +N DKGYGFI EG D+F+H SA+ G +LT G+ V + V+ G Sbjct: 2 QGRVKNFNVDKGYGFIEAEGQ----PDIFVHFSAINEPGFKSLTPGETVDFVIVEG-PRG 56 Query: 64 KYSAEN 69 +A Sbjct: 57 PQAANV 62 >gi|52843021|ref|YP_096820.1| cold shock protein CspE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295652|ref|YP_128067.1| hypothetical protein lpl2740 [Legionella pneumophila str. Lens] gi|54298813|ref|YP_125182.1| hypothetical protein lpp2878 [Legionella pneumophila str. Paris] gi|148361138|ref|YP_001252345.1| cold shock protein CspE [Legionella pneumophila str. Corby] gi|296108468|ref|YP_003620169.1| hypothetical protein lpa_04102 [Legionella pneumophila 2300/99 Alcoy] gi|52630132|gb|AAU28873.1| cold shock protein CspE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752598|emb|CAH14031.1| hypothetical protein lpp2878 [Legionella pneumophila str. Paris] gi|53755484|emb|CAH16983.1| hypothetical protein lpl2740 [Legionella pneumophila str. Lens] gi|148282911|gb|ABQ56999.1| cold shock protein CspE [Legionella pneumophila str. Corby] gi|295650370|gb|ADG26217.1| hypothetical protein lpa_04102 [Legionella pneumophila 2300/99 Alcoy] gi|307611696|emb|CBX01390.1| hypothetical protein LPW_30821 [Legionella pneumophila 130b] Length = 68 Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW+N KG+GF+ G D F+H SA+ +G L EG V + Sbjct: 6 RGTVKWFNESKGFGFLE-----SGGKDYFVHFSAIQGSGFKTLAEGATVMFKACNGQKG- 59 Query: 64 KYSAENLKLV 73 AE +++V Sbjct: 60 -PQAEEVEVV 68 >gi|1763348|gb|AAC47478.1| LIN-28 [Caenorhabditis remanei] Length = 239 Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + + E D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 55 GSCKWFNVSKGYGFVIDDITRE---DLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110 >gi|170596965|ref|XP_001902961.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi] gi|158589027|gb|EDP28189.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi] Length = 290 Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++GDD+F+H++AV L +L +G+ V +D V+ Sbjct: 59 QGTVKWFNVKNGYGFI---NRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEG 115 Query: 60 DANGKYSAEN 69 G +A Sbjct: 116 Q-KGPEAANV 124 >gi|116494772|ref|YP_806506.1| cold shock protein [Lactobacillus casei ATCC 334] gi|191638285|ref|YP_001987451.1| Cold-shock protein [Lactobacillus casei BL23] gi|116104922|gb|ABJ70064.1| cold-shock DNA-binding protein family [Lactobacillus casei ATCC 334] gi|190712587|emb|CAQ66593.1| Cold-shock protein [Lactobacillus casei BL23] gi|327385511|gb|AEA56985.1| Cold shock domain protein [Lactobacillus casei BD-II] Length = 73 Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K +N DKGYGFI EG D+F+H SA+ G +LT G+ V + V+ G Sbjct: 2 QGRVKNFNVDKGYGFIEAEGQ----PDIFVHFSAINEPGFKSLTPGETVDFVIVEG-PRG 56 Query: 64 KYSAEN 69 +A Sbjct: 57 PQAANV 62 >gi|7498486|pir||T20509 hypothetical protein F02E9.2a - Caenorhabditis elegans Length = 211 Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + + G+D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 55 GSCKWFNVSKGYGFVIDDIT---GEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 110 >gi|187935705|ref|YP_001885709.1| hypothetical protein CLL_A1515 [Clostridium botulinum B str. Eklund 17B] gi|187723858|gb|ACD25079.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] Length = 69 Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 7/71 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62 G +KW+N +KGYGFI S + GDDVF H S + G +L EG+ VT+D Q+ Sbjct: 5 TGIVKWFNAEKGYGFI----SCDEGDDVFAHHSQIKENGPEKDLHEGESVTFDI-QDGEK 59 Query: 63 GKYSAENLKLV 73 G A N++ + Sbjct: 60 GPM-ATNIQKL 69 >gi|254498496|ref|ZP_05111222.1| cold shock domain-contain protein [Legionella drancourtii LLAP12] gi|254352272|gb|EET11081.1| cold shock domain-contain protein [Legionella drancourtii LLAP12] Length = 68 Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI SG D F+H SA+ S G L EG V + + Sbjct: 7 GKVKWFNEGKGFGFIE-----SSGKDYFVHFSAIQSNGFKTLPEGAKVLFKMSKGQKG-- 59 Query: 65 YSAENLKLV 73 AE ++L+ Sbjct: 60 LQAEEVELI 68 >gi|54297162|ref|YP_123531.1| hypothetical protein lpp1207 [Legionella pneumophila str. Paris] gi|148358792|ref|YP_001249999.1| cold shock domain family transporter protein CspA [Legionella pneumophila str. Corby] gi|296106837|ref|YP_003618537.1| cold shock domain family protein CspA [Legionella pneumophila 2300/99 Alcoy] gi|53750947|emb|CAH12358.1| hypothetical protein lpp1207 [Legionella pneumophila str. Paris] gi|148280565|gb|ABQ54653.1| cold shock domain family protein CspA [Legionella pneumophila str. Corby] gi|295648738|gb|ADG24585.1| cold shock domain family protein CspA [Legionella pneumophila 2300/99 Alcoy] gi|307609962|emb|CBW99490.1| hypothetical protein LPW_12631 [Legionella pneumophila 130b] Length = 77 Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GFI + G+D+F+H + G L E VT++ + Sbjct: 4 RETGHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPK 59 Query: 62 NGKYSAENLKLVPKS 76 A+N+ + +S Sbjct: 60 G--LKAQNVVVASES 72 >gi|54294149|ref|YP_126564.1| hypothetical protein lpl1213 [Legionella pneumophila str. Lens] gi|53753981|emb|CAH15452.1| hypothetical protein lpl1213 [Legionella pneumophila str. Lens] Length = 77 Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GFI + G+D+F+H + G L E VT++ + Sbjct: 4 RETGHVKWFNEKKGFGFIV----NQKGEDIFVHYKDIQGVGFKTLHENDPVTFELDRGPK 59 Query: 62 NGKYSAENLKLVPKS 76 A+N+ + +S Sbjct: 60 G--LKAQNVVVASES 72 >gi|156972845|ref|YP_001443752.1| cold shock protein [Vibrio harveyi ATCC BAA-1116] gi|156524439|gb|ABU69525.1| hypothetical protein VIBHAR_00522 [Vibrio harveyi ATCC BAA-1116] Length = 69 Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KG+GFI+ +G+D+F+H + G L EG V++ + Sbjct: 7 GTVKWFNEAKGFGFISQ----ANGNDLFVHFRNILGDGFKKLIEGDQVSFTVGKGPKG-- 60 Query: 65 YSAENLKLV 73 AEN+ + Sbjct: 61 LQAENVTTI 69 >gi|7498487|pir||T20510 hypothetical protein F02E9.2b - Caenorhabditis elegans Length = 180 Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 GS KW+N KGYGF+ + + G+D+F+H+S + G +L EG+ V+Y Y+Q +NGK Sbjct: 24 GSCKWFNVSKGYGFVIDDIT---GEDLFVHQSNLNMQGFRSLDEGERVSY-YIQERSNGK 79 >gi|87121680|ref|ZP_01077567.1| Cold-shock protein, DNA-binding [Marinomonas sp. MED121] gi|86162931|gb|EAQ64209.1| Cold-shock protein, DNA-binding [Marinomonas sp. MED121] Length = 79 Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++KW+N KG GFI + DVF+H ++ S G L +GQ V++ +ND G Sbjct: 6 KGTVKWFNDSKGVGFIQRDNEA----DVFVHYKSIVSEGHKTLKKGQAVSFFITENDF-G 60 Query: 64 KYSAEN 69 + ++E Sbjct: 61 RQASEV 66 >gi|262037747|ref|ZP_06011189.1| cold shock protein-related protein [Leptotrichia goodfellowii F0264] gi|261748219|gb|EEY35616.1| cold shock protein-related protein [Leptotrichia goodfellowii F0264] Length = 65 Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI S E G+D FLH S + G ++ EG+ V++D V+ G Sbjct: 3 GKVKWFNDKKGFGFI----SGEDGNDYFLHFSKINKEGFKSVNEGEEVSFD-VEEGPKGP 57 Query: 65 YSAENLK 71 + + Sbjct: 58 QATNVVS 64 >gi|242278634|ref|YP_002990763.1| cold-shock DNA-binding domain protein [Desulfovibrio salexigens DSM 2638] gi|242121528|gb|ACS79224.1| cold-shock DNA-binding domain protein [Desulfovibrio salexigens DSM 2638] Length = 69 Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G + W+N KG+GFI E+G D+++H S V G L G+ V ++ + D Sbjct: 1 MSLKGVVSWFNDIKGFGFIV----DEAGRDIYVHYSEVLRDGFKTLNVGEKVVFEVIDED 56 Query: 61 ANGKYSAENL 70 K +A + Sbjct: 57 TAPKATAVRI 66 >gi|81428557|ref|YP_395557.1| cold shock protein CspA family protein [Lactobacillus sakei subsp. sakei 23K] gi|78610199|emb|CAI55248.1| Similar to cold shock protein, CspA family [Lactobacillus sakei subsp. sakei 23K] Length = 68 Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW++ KGYGFI + +++F+H +A+ G L + V ++ + A Sbjct: 1 MERGIVKWFSNAKGYGFI----NYRDDEEIFVHFTAIQIDGYKTLDKDDQVLFEVKEG-A 55 Query: 62 NGKYSAENLKL 72 G +A K+ Sbjct: 56 RGLQAANVQKI 66 >gi|190014803|ref|YP_001967567.1| orf_Bo170 [Agrobacterium tumefaciens] gi|71849606|gb|AAZ50554.1| orf_Bo170 [Agrobacterium tumefaciens] Length = 100 Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ K +GFITP+ + G DVFLH S++A L G + Y Q Sbjct: 1 MPTGKVKWFDAAKRFGFITPD---DGGPDVFLHLSSIADPACPTLQPGLRLHYGVQQ--K 55 Query: 62 NGKYSAENLKLVPKS 76 GK +A+++ VP Sbjct: 56 GGKVTAKDVGPVPVE 70 >gi|268316772|ref|YP_003290491.1| cold-shock DNA-binding domain-containing protein [Rhodothermus marinus DSM 4252] gi|262334306|gb|ACY48103.1| cold-shock DNA-binding domain protein [Rhodothermus marinus DSM 4252] Length = 70 Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60 + +G++KW++ +KGYGFI +G G+DVF+HR+AVA G L +G+ ++++ + Sbjct: 1 MSQGTVKWFSAEKGYGFIQQDG---GGEDVFVHRTAVAGLGYGEELRKGERLSFEIRRTP 57 Query: 61 ANGKYSAENLKLV 73 A N+K + Sbjct: 58 KG--LQAVNVKRL 68 >gi|303283324|ref|XP_003060953.1| cold-shock protein with RNA binding domain [Micromonas pusilla CCMP1545] gi|226457304|gb|EEH54603.1| cold-shock protein with RNA binding domain [Micromonas pusilla CCMP1545] Length = 316 Score = 80.4 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ W+N KG+GFIT E + D+F+H+S + S G +L + + V + Q +G+ Sbjct: 42 GTVNWFNVAKGFGFITRE---DGQGDIFVHQSDIYSEGFRSLRDEEPVEFTL-QEIGDGR 97 Query: 65 YSAENLK 71 Y A ++ Sbjct: 98 YKAVHVT 104 >gi|324511297|gb|ADY44709.1| Y-box factor [Ascaris suum] Length = 294 Score = 80.4 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++G+D+F+H++AV L +L +G+ V +D V+ Sbjct: 39 QGTVKWFNVKNGYGFI---NRADTGEDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEG 95 Query: 60 DANGKYSAEN 69 G +A Sbjct: 96 Q-KGPEAANV 104 >gi|159476838|ref|XP_001696518.1| nucleic acid binding protein [Chlamydomonas reinhardtii] gi|30527347|gb|AAN77901.2| putative nucleic acid binding protein [Chlamydomonas reinhardtii] gi|158282743|gb|EDP08495.1| nucleic acid binding protein [Chlamydomonas reinhardtii] Length = 247 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G++KW+N KG+GFITP G G+D+F+H++ + S G +L EG++ V+ Sbjct: 5 LRQQGTVKWFNATKGFGFITPGG---GGEDLFVHQTNINSEGFRSLREGEV-VEFEVEAG 60 Query: 61 ANGKYSAENLK 71 +G+ A N+ Sbjct: 61 PDGRSKAVNVT 71 >gi|254455833|ref|ZP_05069262.1| 'Cold-shock' DNA-binding domain, putative [Candidatus Pelagibacter sp. HTCC7211] gi|207082835|gb|EDZ60261.1| 'Cold-shock' DNA-binding domain, putative [Candidatus Pelagibacter sp. HTCC7211] Length = 70 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G IKWYN KGYGFI + D F+H SAV +AG+ L EG + + ++ G Sbjct: 5 TGKIKWYNGKKGYGFIERDDKE---KDAFVHASAVKAAGMRYLNEGDKLEFTL-EDGPKG 60 Query: 64 KYSAENLKLV 73 SA NLK V Sbjct: 61 P-SAVNLKKV 69 >gi|269121609|ref|YP_003309786.1| cold-shock DNA-binding domain protein [Sebaldella termitidis ATCC 33386] gi|268615487|gb|ACZ09855.1| cold-shock DNA-binding domain protein [Sebaldella termitidis ATCC 33386] Length = 65 Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N KG+GFI S E G+D FLH S + G ++ EG+ V ++ V+ G Sbjct: 2 QGKVKWFNDKKGFGFI----SGEDGNDYFLHFSKIEKDGFKSVNEGEEVIFE-VEEGPKG 56 Query: 64 KYSAENL 70 + + Sbjct: 57 PQATNVV 63 >gi|224370359|ref|YP_002604523.1| CspB2 [Desulfobacterium autotrophicum HRM2] gi|223693076|gb|ACN16359.1| CspB2 [Desulfobacterium autotrophicum HRM2] Length = 66 Score = 80.4 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI E +G DV++H + + S L++G V+++ +N Sbjct: 1 MAEGIVKWFNDSKGFGFIEQE----NGPDVYVHHTGINSTSFKPLSQGDRVSFEI-ENGQ 55 Query: 62 NGKYSAENLKLV 73 G A N+ ++ Sbjct: 56 KG-TVAVNVTVL 66 >gi|254504340|ref|ZP_05116491.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] gi|222440411|gb|EEE47090.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] Length = 70 Score = 80.4 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 5/74 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+IK++N D+G+GFITPE G DVF+H +A AG+ EG V++ ++D Sbjct: 1 MRENGTIKFFNHDRGFGFITPE---NGGKDVFVHVTAFEQAGIGTPVEGAKVSF-VAEDD 56 Query: 61 ANGK-YSAENLKLV 73 G+ A L+L+ Sbjct: 57 RRGRGKQAAQLELL 70 >gi|167461595|ref|ZP_02326684.1| putative cold-shock DNA-binding domain protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 59 Score = 80.4 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 N +KG+GFI E G+DVF+H S++ G +L EGQ V ++ Q + AEN+ Sbjct: 1 NAEKGFGFIE----IEQGNDVFVHFSSIEGDGYKSLDEGQRVQFNVTQGNRG--PQAENV 54 Query: 71 KLV 73 V Sbjct: 55 SKV 57 >gi|302131878|ref|ZP_07257868.1| cold shock protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 47 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 4/48 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 G++KW+N +KG+GFITP +SGDD+F+H A+ S G +L EG Sbjct: 4 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEG 47 >gi|10955166|ref|NP_059822.1| hypothetical protein pTi_150 [Agrobacterium tumefaciens] gi|8572732|gb|AAF77178.1| ysb [Agrobacterium tumefaciens] gi|11124691|emb|CAC15178.1| CspA-like protein [Agrobacterium tumefaciens] Length = 100 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ K +GFITP+ + G DVFLH S++ L G + Y Q Sbjct: 1 MATGKVKWFDATKRFGFITPD---DGGPDVFLHLSSITDPACPTLHPGFRLHYGVEQ--R 55 Query: 62 NGKYSAENLKLVPKSS 77 GK +A +++ P Sbjct: 56 GGKVTASDVRPAPVEQ 71 >gi|254496062|ref|ZP_05108963.1| cold shock protein CspE [Legionella drancourtii LLAP12] gi|254354704|gb|EET13338.1| cold shock protein CspE [Legionella drancourtii LLAP12] Length = 68 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW+N KG+GF+ G D F+H SA+ +G L EG V + Sbjct: 6 RGTVKWFNESKGFGFLE-----SGGKDYFVHFSAIQGSGFKTLAEGATVMFKASNGQKG- 59 Query: 64 KYSAENLKLV 73 AE +++V Sbjct: 60 -PQAEEVEVV 68 >gi|117927315|ref|YP_871866.1| cold-shock DNA-binding protein family protein [Acidothermus cellulolyticus 11B] gi|117647778|gb|ABK51880.1| cold-shock DNA-binding protein family [Acidothermus cellulolyticus 11B] Length = 129 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+P+KG+GF+T + G DVF+ SA+ AG+ +L G V + V++ Sbjct: 1 MPTGKVKWYDPEKGFGFLTRD----DGGDVFVRASAL-PAGVTSLKPGSRVEFGIVESKR 55 Query: 62 NGKYSAENLKLVPK 75 A +++L+ Sbjct: 56 G--EQALSVRLLDP 67 >gi|83319695|ref|YP_424021.1| cold shock protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|313664918|ref|YP_004046789.1| cold-shock DNA-binding domain protein [Mycoplasma leachii PG50] gi|83283581|gb|ABC01513.1| cold shock protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|312949345|gb|ADR23941.1| cold-shock DNA-binding domain protein [Mycoplasma leachii PG50] Length = 68 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +KG+GFIT + DVF++ + + G L +GQ V+Y+ + Sbjct: 1 MSTGIVKWFNDEKGFGFITNDS---DNKDVFVYFANINVNGYKTLEQGQKVSYELNKGIK 57 Query: 62 NGKYSAENLKLVP 74 A N+ + Sbjct: 58 G--LEAFNVSITK 68 >gi|326332155|ref|ZP_08198437.1| cold-shock domain family protein [Nocardioidaceae bacterium Broad-1] gi|325950053|gb|EGD42111.1| cold-shock domain family protein [Nocardioidaceae bacterium Broad-1] Length = 132 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KG+GF++ + G DV++H A+ L G V + Q Sbjct: 1 MPTGKVKWFDATKGFGFLSQD----DGPDVYVHADALPEGAAKTLKAGTRVEFGIAQGRR 56 Query: 62 NGKYSAENLKLVPKS 76 A ++ ++ +S Sbjct: 57 G--EQALSVTVLERS 69 >gi|297278427|ref|XP_001088540.2| PREDICTED: hypothetical protein LOC700140 [Macaca mulatta] Length = 511 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 205 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 261 Query: 61 ANGKYSAEN 69 G +A Sbjct: 262 -KGAEAANV 269 >gi|323493049|ref|ZP_08098183.1| cold shock protein CspE [Vibrio brasiliensis LMG 20546] gi|323312697|gb|EGA65827.1| cold shock protein CspE [Vibrio brasiliensis LMG 20546] Length = 50 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 4/48 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL 51 G++KW+N KG+GFI E +G DVF H SA+ G L EGQ Sbjct: 6 TGTVKWFNETKGFGFIQQE----NGPDVFAHFSAITGDGFRTLVEGQK 49 >gi|331698444|ref|YP_004334683.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326953133|gb|AEA26830.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans CB1190] Length = 315 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 6/77 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQND 60 + +G+++W++ D+G+GF+ PE + DVF+H S + G L EGQ V ++ +ND Sbjct: 1 MPQGTVRWFDADRGFGFLAPE---DGSPDVFVHASEIVGGGGAKALREGQAVVFEIGEND 57 Query: 61 ANGKYSAENLKLVPKSS 77 A +++ ++ Sbjct: 58 RG--PQALGVRVTADAA 72 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ WY P KGYGF +P+G G D+F+H SA+ + G+ EGQ V + V + G Sbjct: 81 GTVNWYEPGKGYGFASPDG---GGADIFVHSSAIVTGGVVT--EGQRVAFLIV-DGERGP 134 Query: 65 YSAENLKL 72 + + L Sbjct: 135 QAGHVIPL 142 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++ WY+ D+G+GFI P+ DVF+H A+A GL L EG V Y+ + Sbjct: 161 TVAWYDEDRGFGFIDPDS---GAGDVFVHARALA-EGLTWLAEGDRVAYEVASGEKG--P 214 Query: 66 SAENLKLV 73 A ++ LV Sbjct: 215 QARDVHLV 222 Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + Y+ D+G+GFITP+ GDD+F H S + + L +G V Y Q+D Sbjct: 253 EGVVARYDEDRGFGFITPDA---GGDDLFAHVSVIMGS--EPLQKGDRVRYAVRQSDRGP 307 Query: 64 K 64 + Sbjct: 308 Q 308 >gi|182678504|ref|YP_001832650.1| cold-shock DNA-binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634387|gb|ACB95161.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 224 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW++ +KG+GF+ S + G DVF+H S + S+G+ +L EGQ VT V + G Sbjct: 160 TGTVKWFDDNKGFGFVQ---SNDGGKDVFVHISILGSSGVQHLAEGQAVTMRVV-DTPKG 215 Query: 64 KYS 66 + + Sbjct: 216 REA 218 Score = 54.2 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+ DKG+GF+ + D FLH A+ +AG ++ G + + NG Sbjct: 64 VKWFKGDKGFGFVE---LSNGAGDAFLHIGALQAAGYESVPPGAKLKVNV----GNGMKG 116 Query: 67 AENLKLVP 74 A+ +++ Sbjct: 117 AQVTRVLE 124 >gi|154253414|ref|YP_001414238.1| cold-shock DNA-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154157364|gb|ABS64581.1| putative cold-shock DNA-binding domain protein [Parvibaculum lavamentivorans DS-1] Length = 199 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KGYGFI PE GDDV +H S + AGL L EG VT + V+ Sbjct: 39 TGVVKWFDAVKGYGFIIPE---NGGDDVLVHLSCLKQAGLEALDEGTTVTCEAVRRPKG- 94 Query: 64 KYSAENLKLV 73 A+ +++V Sbjct: 95 ---AQAIRVV 101 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +GYGF+T E D+F+H + G+ +L GQ + + + G Sbjct: 138 VKWFNRARGYGFVTR---GEGTPDIFIHMETLRRYGIRDLLPGQQINVRFGEG-PKGLMV 193 Query: 67 AE 68 AE Sbjct: 194 AE 195 >gi|317508884|ref|ZP_07966523.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316252845|gb|EFV12276.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 77 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+++W++P+KG+GFI P+ + +VF+ +A+ G L E Q V ++ Sbjct: 1 MALGTVQWFDPEKGFGFIAPD---DGSAEVFVRYTAIEGRGFRKLVESQKVEFETALIGK 57 Query: 62 NGKYSAENLKLVPKS 76 + A ++ V ++ Sbjct: 58 D--LHATAVRAVEEA 70 >gi|296394984|ref|YP_003659868.1| cold-shock DNA-binding domain-containing protein [Segniliparus rotundus DSM 44985] gi|296182131|gb|ADG99037.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM 44985] Length = 77 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+++W++P+KG+GFI P+ + +VF+ +A+ +G L E Q V ++ Sbjct: 1 MALGTVQWFDPEKGFGFIAPD---DGSAEVFVRYTAIEGSGFRKLVENQKVEFETALVGK 57 Query: 62 N 62 + Sbjct: 58 D 58 >gi|271970081|ref|YP_003344277.1| cold-shock DNA-binding domain-containing protein [Streptosporangium roseum DSM 43021] gi|270513256|gb|ACZ91534.1| putative cold-shock DNA-binding domain protein [Streptosporangium roseum DSM 43021] Length = 132 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ DKG+GF+T + G +VF+H SA+ G+ +L GQ V + + Sbjct: 1 MPSGKVKWYDADKGFGFLTRD----DGGEVFVHSSALPG-GVDSLKPGQKVEFGVAEGRR 55 Query: 62 NGKYSAENLKLVPK 75 A +++++ + Sbjct: 56 G--QQALSVRVIDQ 67 >gi|254503760|ref|ZP_05115911.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] gi|222439831|gb|EEE46510.1| 'Cold-shock' DNA-binding domain, putative [Labrenzia alexandrii DFL-11] Length = 66 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++ +G G I PE GDD+ + +A+ +G+ +L EGQLV +D Sbjct: 1 MLHGNVKWFDKGRGVGTIEPE----DGDDILVDITALRRSGIDSLKEGQLVAFDLEW--R 54 Query: 62 NGKYSAENLKLV 73 G+ AE+LK++ Sbjct: 55 RGQMVAEDLKVL 66 >gi|148360277|ref|YP_001251484.1| cold shock domain family transporter protein [Legionella pneumophila str. Corby] gi|148282050|gb|ABQ56138.1| cold shock domain family protein [Legionella pneumophila str. Corby] Length = 73 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + + Sbjct: 6 RGKVKWFNKDKGFGFIE-----SSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKG- 59 Query: 64 KYSAENLKLVP 74 AE ++++ Sbjct: 60 -PQAEEVEVIK 69 >gi|269793785|ref|YP_003313240.1| cold shock domain-containing protein CspD [Sanguibacter keddieii DSM 10542] gi|269095970|gb|ACZ20406.1| cold shock domain protein CspD [Sanguibacter keddieii DSM 10542] Length = 317 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 7/78 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS--AGLFNLTEGQLVTYDYVQN 59 + +G+++W++ ++G+GF+ + + DD+F+H S + G +L EGQ V ++ + Sbjct: 1 MPQGTVRWFDAERGFGFLALD---DGADDLFVHASEIVGNDDGTQSLREGQSVEFEIGEG 57 Query: 60 DANGKYSAENLKLVPKSS 77 D A +++ S+ Sbjct: 58 DRG--PQARRVQITGDSA 73 Score = 68.1 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 5/62 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++ WY P KGYGF+TP+G G ++F H SA+ G+ + EGQ V + V+ + Sbjct: 80 QLGTVTWYEPTKGYGFVTPDG---GGAEIFAHSSAIVGGGV--IAEGQRVAFLVVEGEKG 134 Query: 63 GK 64 + Sbjct: 135 PQ 136 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++ WY+ KG+GF+TP+ D F+H ++A G L EG V++ V D Sbjct: 164 TVSWYDAGKGFGFVTPDSGE---PDAFVHARSLAG-GATELVEGDRVSFSVVPGDRG--P 217 Query: 66 SAENLKLV 73 A+++++V Sbjct: 218 QAQDVRVV 225 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + Y+ ++G+GFITP+ G D+F+H S V G L EG V + Q+D Sbjct: 255 EGVVARYDAERGFGFITPDS---GGPDLFVHVS-VVREG-QELYEGDRVRFQVRQSDRGP 309 Query: 64 K 64 + Sbjct: 310 Q 310 >gi|58584964|ref|YP_198537.1| cold shock protein [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419280|gb|AAW71295.1| Cold shock protein [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 84 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 16/87 (18%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLT--------EGQL 51 + G+IKW+N +KGYGFI PE +G+D+F+H S + +G+ +L +G+ Sbjct: 1 MEFGNIKWFNAEKGYGFIKPEA---NGNDIFVHISTLERSGIRPDSLRGENKEKGIKGER 57 Query: 52 VTYDYVQNDAN---GKYSAENLKLVPK 75 V+Y+ + GK A NLKL+ Sbjct: 58 VSYELKEERGRNGEGKKFAINLKLLED 84 >gi|54293997|ref|YP_126412.1| hypothetical protein lpl1057 [Legionella pneumophila str. Lens] gi|53753829|emb|CAH15294.1| hypothetical protein lpl1057 [Legionella pneumophila str. Lens] gi|307609825|emb|CBW99342.1| hypothetical protein LPW_11201 [Legionella pneumophila 130b] Length = 69 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + + Sbjct: 6 RGKVKWFNKDKGFGFIE-----SSGKDYFVHFSSIQSDGFKTLPDGAAVLFKMGKGQKG- 59 Query: 64 KYSAENLKLVP 74 AE ++++ Sbjct: 60 -PQAEEVEVIK 69 >gi|296276802|ref|ZP_06859309.1| CSD family cold shock protein [Staphylococcus aureus subsp. aureus MR1] Length = 55 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 5/60 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 +KG+GFI E G DVF+H SA+A G +L EGQ V +D V+ D G+ +A +K+ Sbjct: 1 EKGFGFIERE----DGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGD-RGEQAANVVKM 55 >gi|261856912|ref|YP_003264195.1| cold-shock DNA-binding domain protein [Halothiobacillus neapolitanus c2] gi|261837381|gb|ACX97148.1| cold-shock DNA-binding domain protein [Halothiobacillus neapolitanus c2] Length = 143 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N DKG+GFI E +G+D+F+H AV L EGQ V Y Q Sbjct: 77 REVGHVKWFNTDKGFGFIVRE----NGEDLFVHFRAVGDGSTLQLVEGQKVEYHIGQG-R 131 Query: 62 NGKYSAENL 70 G + + + Sbjct: 132 KGPQAEQVV 140 >gi|183598367|ref|ZP_02959860.1| hypothetical protein PROSTU_01759 [Providencia stuartii ATCC 25827] gi|188020543|gb|EDU58583.1| hypothetical protein PROSTU_01759 [Providencia stuartii ATCC 25827] Length = 71 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H G +KW++ +KGYGFI+P GDD+F+ R ++A+ + +L EGQ V + +N + Sbjct: 5 LHMGRVKWFDANKGYGFISP---INGGDDIFVTRKSIANKKIKSLFEGQNVEFSVTRN-S 60 Query: 62 NGKYSAENL 70 +G +A+ + Sbjct: 61 DGITAADVI 69 >gi|195327031|ref|XP_002030225.1| GM24682 [Drosophila sechellia] gi|194119168|gb|EDW41211.1| GM24682 [Drosophila sechellia] Length = 1378 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI + E DVF+H+SA+A + ++ +G++V +D V Sbjct: 63 TGTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 119 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 120 E-KGNEAANV 128 >gi|296106679|ref|YP_003618379.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy] gi|295648580|gb|ADG24427.1| Cold shock protein [Legionella pneumophila 2300/99 Alcoy] Length = 69 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + + Sbjct: 6 RGKVKWFNKDKGFGFIE-----SSGKDYFVHFSSIQSDGFKTLPDGATVLFKMGKGQKG- 59 Query: 64 KYSAENLKLVP 74 AE ++++ Sbjct: 60 -PQAEEVEVIK 69 >gi|254496824|ref|ZP_05109675.1| cold shock domain-contain protein CspA [Legionella drancourtii LLAP12] gi|254353951|gb|EET12635.1| cold shock domain-contain protein CspA [Legionella drancourtii LLAP12] Length = 73 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GFI + GDD+F+H + G L E VT+ + Sbjct: 4 RETGHVKWFNEKKGFGFII----NQQGDDIFVHYKDIQGVGFKTLHENDPVTF-VLDKGP 58 Query: 62 NGKYSAENLKLVPKS 76 G A+++ L+ ++ Sbjct: 59 KG-LKAQDVALLSEA 72 >gi|258654840|ref|YP_003203996.1| cold-shock DNA-binding domain-containing protein [Nakamurella multipartita DSM 44233] gi|258558065|gb|ACV81007.1| cold-shock DNA-binding domain protein [Nakamurella multipartita DSM 44233] Length = 129 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G IKWY+ DKG+GFI +G GDDV + SA+ AG+ L GQ V + + Sbjct: 1 MPSGKIKWYDADKGFGFIAQDG---GGDDVHVRSSAL-PAGVATLKPGQKVEFGVA-DGR 55 Query: 62 NGKYSAENLKLV 73 G A +K++ Sbjct: 56 RGPQ-ALQVKVL 66 >gi|270156922|ref|ZP_06185579.1| cold shock protein [Legionella longbeachae D-4968] gi|289164651|ref|YP_003454789.1| cold shock protein; Qin prophage [Legionella longbeachae NSW150] gi|269988947|gb|EEZ95201.1| cold shock protein [Legionella longbeachae D-4968] gi|288857824|emb|CBJ11670.1| cold shock protein; Qin prophage [Legionella longbeachae NSW150] Length = 71 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G +KW+N KG+GFI E+GDD+F+H + G L E V++ + Sbjct: 4 RETGHVKWFNEKKGFGFII----NENGDDIFVHYKDIQGVGFKTLHENDPVSF-VLDKGP 58 Query: 62 NGKYSAENLKLV 73 G A+++ ++ Sbjct: 59 KG-LKAQDVTII 69 >gi|217976725|ref|YP_002360872.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] gi|217502101|gb|ACK49510.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] Length = 217 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW++ +KG+GF+ S + G DVF+H S + +G+ NL EGQ V+ V + G Sbjct: 153 TGTVKWFDDNKGFGFVQ---SNDGGKDVFVHISILGPSGVQNLAEGQAVSMRVV-DTPKG 208 Query: 64 KYS 66 + + Sbjct: 209 REA 211 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+ DKG+GF+ D FLH A+ +AG + G + + +NG Sbjct: 56 VKWFKGDKGFGFVE---LGNGTGDAFLHIGALQAAGYETVPPGAKLKVNV----SNGMKG 108 Query: 67 AENLKLVP 74 A+ +++ Sbjct: 109 AQVTRVLE 116 >gi|238753510|ref|ZP_04614873.1| Cold shock-like protein [Yersinia ruckeri ATCC 29473] gi|238708463|gb|EEQ00818.1| Cold shock-like protein [Yersinia ruckeri ATCC 29473] Length = 69 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G +KW+N KGYGFI+P + G DV++ ++A+A+ +L+EGQ V + ++ Sbjct: 2 MLKMGRVKWFNQLKGYGFISP---LDGGLDVYVSKTAIANTKNKSLSEGQNVEFSTYKS- 57 Query: 61 ANGKYSAENL 70 +G +A+ + Sbjct: 58 IHGPSAADVI 67 >gi|73976711|ref|XP_848660.1| PREDICTED: similar to nuclease sensitive element binding protein 1 [Canis familiaris] Length = 448 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 170 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 226 Query: 61 ANGKYSAEN 69 G +A Sbjct: 227 -KGAEAANV 234 >gi|3831556|gb|AAC69999.1| major cold shock protein [Enterococcus faecalis] Length = 50 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 5/55 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 KG+GFI+PE G+DVF+H SA+ G L EGQ VT+D V++ G +A Sbjct: 1 KGFGFISPE----DGNDVFVHFSAIQGDGFKTLEEGQAVTFD-VEDGHRGPQAAN 50 >gi|227202808|dbj|BAH56877.1| AT4G38680 [Arabidopsis thaliana] Length = 204 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 33/45 (73%), Gaps = 3/45 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46 +GS+KW++ KG+GFITP+ + GDD+F+H+S++ S G +L Sbjct: 10 RRKGSVKWFDTQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSL 51 >gi|126208205|ref|YP_001053430.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae L20] gi|126096997|gb|ABN73825.1| cold shock-like protein CspD [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 63 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GFIT + D+F H S + S G +L GQ V ++ + + S Sbjct: 1 MKWFNSAKGFGFITSDNVE---GDIFAHFSEIQSEGYRSLKVGQKVQFELINGERG--AS 55 Query: 67 AENLKLVP 74 A + LV Sbjct: 56 AAKISLVE 63 >gi|85057350|ref|YP_456266.1| cold shock protein [Aster yellows witches'-broom phytoplasma AYWB] gi|84789455|gb|ABC65187.1| cold shock protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 74 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60 +G+ +W++ DKGYGFI + G D+F+H S++ + G L E V + + D Sbjct: 6 EQGTCRWFSKDKGYGFII----SADGKDIFVHYSSIQTEVFGRKTLNENDKVEFTVKEGD 61 Query: 61 ANGKYSAENLKLV 73 A ++ +V Sbjct: 62 RG--AQAVDVVVV 72 >gi|157738090|ref|YP_001490774.1| cold-shock protein, DNA-binding [Arcobacter butzleri RM4018] gi|315636444|ref|ZP_07891687.1| cold shock protein CspA [Arcobacter butzleri JV22] gi|157699944|gb|ABV68104.1| cold-shock protein, DNA-binding [Arcobacter butzleri RM4018] gi|315479272|gb|EFU69962.1| cold shock protein CspA [Arcobacter butzleri JV22] Length = 72 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 9/77 (11%) Query: 1 MVHR--GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDY 56 M ++ G++KW+N +KG+GFI E + F+H S + S+ G L +GQ V+++ Sbjct: 1 MANQNIGTVKWFNSEKGFGFIQLENEDQE---FFVHHSEINSSNYGRATLNDGQKVSFEI 57 Query: 57 VQNDANGKYSAENLKLV 73 +ND A+N++ + Sbjct: 58 GKNDKG--PQAKNVRAI 72 >gi|223982759|ref|ZP_03632987.1| hypothetical protein HOLDEFILI_00261 [Holdemania filiformis DSM 12042] gi|223965259|gb|EEF69543.1| hypothetical protein HOLDEFILI_00261 [Holdemania filiformis DSM 12042] Length = 65 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K +N +KGYGFI G DVF H S + G + E V +D ++ D Sbjct: 2 QGKVKMFNKEKGYGFI----KLSDGRDVFFHYSQLVMDGFKTIEENAEVEFDLIEGDRG- 56 Query: 64 KYSAENLKLV 73 Y A N+K + Sbjct: 57 -YQAHNVKKL 65 >gi|301784071|ref|XP_002927454.1| PREDICTED: hypothetical protein LOC100472801 [Ailuropoda melanoleuca] Length = 371 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 62 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118 Query: 61 ANGKYSAEN 69 G +A Sbjct: 119 -KGAEAANV 126 >gi|18310224|ref|NP_562158.1| cold shock protein [Clostridium perfringens str. 13] gi|110798743|ref|YP_695895.1| cold shock protein [Clostridium perfringens ATCC 13124] gi|168205487|ref|ZP_02631492.1| cold shock protein [Clostridium perfringens E str. JGS1987] gi|168209633|ref|ZP_02635258.1| cold shock protein [Clostridium perfringens B str. ATCC 3626] gi|168213057|ref|ZP_02638682.1| cold shock protein [Clostridium perfringens CPE str. F4969] gi|168217114|ref|ZP_02642739.1| cold shock protein [Clostridium perfringens NCTC 8239] gi|169343961|ref|ZP_02864952.1| cold shock protein [Clostridium perfringens C str. JGS1495] gi|18144903|dbj|BAB80948.1| cold shock protein [Clostridium perfringens str. 13] gi|110673390|gb|ABG82377.1| cold shock protein [Clostridium perfringens ATCC 13124] gi|169297869|gb|EDS79964.1| cold shock protein [Clostridium perfringens C str. JGS1495] gi|170663060|gb|EDT15743.1| cold shock protein [Clostridium perfringens E str. JGS1987] gi|170712262|gb|EDT24444.1| cold shock protein [Clostridium perfringens B str. ATCC 3626] gi|170715408|gb|EDT27590.1| cold shock protein [Clostridium perfringens CPE str. F4969] gi|182380855|gb|EDT78334.1| cold shock protein [Clostridium perfringens NCTC 8239] Length = 69 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 7/71 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62 G +KW+N +KGYGFI S + GDDVF+H S V G +L EG+ V++D + + Sbjct: 5 TGIVKWFNQEKGYGFI----SCDEGDDVFVHISQVKEKGPEKDLHEGESVSFDISEGEKG 60 Query: 63 GKYSAENLKLV 73 A N++ + Sbjct: 61 --PMATNVQKL 69 >gi|72160638|ref|YP_288295.1| cold-shock DNA-binding protein family protein [Thermobifida fusca YX] gi|71914370|gb|AAZ54272.1| cold-shock DNA-binding protein family [Thermobifida fusca YX] Length = 127 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ KG+GF+T + G +VFLH SA+ G L GQ V + V+ Sbjct: 1 MPTGKVKWYDAGKGFGFLTKD----DGGEVFLHASAL-PPGTTTLRPGQRVEFGIVEGRK 55 Query: 62 NGKYSAENLKLV 73 A ++L+ Sbjct: 56 G--TQALQVRLL 65 >gi|118589799|ref|ZP_01547204.1| putative cold shock-like transcription regulator protein [Stappia aggregata IAM 12614] gi|118437885|gb|EAV44521.1| putative cold shock-like transcription regulator protein [Stappia aggregata IAM 12614] Length = 70 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+IK++N D+G+GFITPE DVF+H +A AG+ EG +++ ++D Sbjct: 1 MRENGTIKFFNHDRGFGFITPE---NGSKDVFVHITAFEQAGIGTPVEGAKISF-VAEDD 56 Query: 61 ANGK-YSAENLKLV 73 G+ A L+L+ Sbjct: 57 RRGRGKQAAQLELL 70 >gi|90415923|ref|ZP_01223856.1| Cold shock protein [marine gamma proteobacterium HTCC2207] gi|90332297|gb|EAS47494.1| Cold shock protein [marine gamma proteobacterium HTCC2207] Length = 89 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +KW++ D+G+GFI P+ +F H + G L Q VTYD V++ Sbjct: 1 MADTGRVKWFSNDRGFGFIEPDNGERE---LFAHHQNIIMEGYKTLKCFQRVTYD-VEHG 56 Query: 61 ANGKYSAENLKLVPKSS 77 NG+++ + ++P + Sbjct: 57 KNGRHA---VNIIPGEA 70 >gi|269955008|ref|YP_003324797.1| cold-shock DNA-binding domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269303689|gb|ACZ29239.1| cold-shock DNA-binding domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 311 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ WY+ KG+GF+ P+ G+DVF+H SA+ GL L EG VTYD V+ + Sbjct: 158 GTVSWYDDTKGFGFVAPDS---GGEDVFVHVSAL-GPGLTELFEGARVTYDVVEGERG-- 211 Query: 65 YSAENLKLV 73 +A +++LV Sbjct: 212 PNAHDVRLV 220 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60 + +G+++W++ ++G+GFI +D+F+H S + G L EGQ V ++ + D Sbjct: 1 MPQGTVRWFDAERGFGFI---DVGNEAEDLFVHASEIVGDDGPRLLREGQAVEFEVGEGD 57 Query: 61 ANGKYSAENLKL 72 A +++ Sbjct: 58 RG--PQARRVRV 67 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 5/58 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++ WY P KGYGF+TP+G + VF+H SA+ G+ + EGQ V + V+ + Sbjct: 81 GTVSWYEPAKGYGFVTPDGGRDE---VFVHSSAIVGGGVIS--EGQRVAFLVVEGERG 133 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++ Y+ ++G+GFITP+ G D+F+H S + G +L EG V + Q+D Sbjct: 249 EGTVARYDAERGFGFITPDA---GGADLFVHVSVLRGVG--DLAEGDRVRFKVRQSDRG- 302 Query: 64 KYSAENLKLV 73 A+ ++LV Sbjct: 303 -PQADGVELV 311 >gi|215426134|ref|ZP_03424053.1| cold shock protein B cspB [Mycobacterium tuberculosis T92] Length = 157 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+PDKG+GF++ E G+DV++ SA+ G+ L GQ V + + Sbjct: 1 MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIA-SGR 54 Query: 62 NGKYSAENLKLVPK 75 G A +L+L+ Sbjct: 55 RGPQ-ALSLRLIEP 67 >gi|257057363|ref|YP_003135195.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] gi|256587235|gb|ACU98368.1| cold-shock DNA-binding protein family [Saccharomonospora viridis DSM 43017] Length = 128 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ DKG+GF+T + G DV++ +SA+ G+ L GQ + + + Sbjct: 1 MPTGKVKWYDADKGFGFVT----EDGGRDVYVRKSAL-PQGVETLKAGQRLEFGIAEGRR 55 Query: 62 NGKYSAENLKLVPK 75 A +++L+ Sbjct: 56 G--PQALSVRLLDP 67 >gi|328957375|ref|YP_004374761.1| cold shock protein CspB [Carnobacterium sp. 17-4] gi|328673699|gb|AEB29745.1| cold shock protein CspB [Carnobacterium sp. 17-4] Length = 68 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60 + +G++KW++ +KGYGFI +D+F+H + + +L+ GQ V+++ ++ Sbjct: 1 MEQGTVKWFSNEKGYGFIE----YNETEDIFIHFTGIDNGEDFKSLSSGQHVSFEILEG- 55 Query: 61 ANGKYSAENLKL 72 A G + + + + Sbjct: 56 ARGPQATKVIVV 67 >gi|83649125|ref|YP_437560.1| cold shock protein [Hahella chejuensis KCTC 2396] gi|83637168|gb|ABC33135.1| Cold shock protein [Hahella chejuensis KCTC 2396] Length = 71 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KGYGFI DVF+H SA+ G L G V Y VQ+ + G Sbjct: 8 TGMVKWFNNAKGYGFIESAEG-----DVFVHYSAIRKDGYKTLRAGSHVEYQ-VQHSSKG 61 Query: 64 KYSAEN 69 ++ E Sbjct: 62 LFAQEV 67 >gi|2493772|sp|P72191|TAPA_PSEFR RecName: Full=Temperature acclimation protein A; AltName: Full=E7.0 gi|1513084|gb|AAC45999.1| temperature acclimation protein A [Pseudomonas fragi] Length = 59 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 6/62 (9%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 +N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ A+ Sbjct: 1 FNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQKG--MQADK 54 Query: 70 LK 71 ++ Sbjct: 55 VQ 56 >gi|269123694|ref|YP_003306271.1| cold-shock DNA-binding domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268315020|gb|ACZ01394.1| cold-shock DNA-binding domain protein [Streptobacillus moniliformis DSM 12112] Length = 65 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW+N KG+GFI+ E G D FLH S + G + EG+ V +D ++ G Sbjct: 3 GKVKWFNEKKGFGFIS----GEDGKDYFLHFSKINKGGFKTVNEGEEVEFDI-EDGEKGP 57 Query: 65 YSAENLK 71 + + Sbjct: 58 QATNVVS 64 >gi|170017486|ref|YP_001728405.1| cold shock protein [Leuconostoc citreum KM20] gi|169804343|gb|ACA82961.1| Cold shock protein [Leuconostoc citreum KM20] Length = 74 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K + ++GYG+ITP+ G+DVF+H + + G L +G+ V+Y VQ Sbjct: 1 MKTGIVKIWQKERGYGYITPDA---GGEDVFVHFNGIDMPGFKALKQGEKVSYVLVQGYK 57 Query: 62 NGKYSAENLKLVPKSSN 78 +A+ ++ K+S Sbjct: 58 A-PQAAQVQPIMKKASE 73 >gi|256374634|ref|YP_003098294.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] gi|255918937|gb|ACU34448.1| cold-shock DNA-binding domain protein [Actinosynnema mirum DSM 43827] Length = 131 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ +KG+GF+T + G+DV++ +SA+ G+ L GQ + + + Sbjct: 4 VPTGKVKWYDSEKGFGFVTQD----GGEDVYVRKSAL-PEGVDALKAGQRIEFGMAEGRR 58 Query: 62 NGKYSAENLKLVPKS 76 A +++LV + Sbjct: 59 G--PQALSVRLVDPA 71 >gi|108803576|ref|YP_643513.1| cold-shock DNA-binding protein family protein [Rubrobacter xylanophilus DSM 9941] gi|108764819|gb|ABG03701.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus DSM 9941] Length = 69 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 5/74 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +KW++ +KG+GFI TESG++V +H + + G L EG V Y V+ + Sbjct: 1 MGRGRVKWFSGEKGFGFIE----TESGEEVLVHYTEIKGEGFRALEEGAEVEYAAVKTE- 55 Query: 62 NGKYSAENLKLVPK 75 +G+ A ++++P+ Sbjct: 56 DGRRRAFGVRMLPR 69 >gi|330883205|gb|EGH17354.1| cold shock domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 59 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 6/62 (9%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 +N +KG+GFITPE SG D+F+H A+ G +L EGQ VT+ VQ A+ Sbjct: 1 FNDEKGFGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQKG--MQADE 54 Query: 70 LK 71 ++ Sbjct: 55 VQ 56 >gi|296201419|ref|XP_002748032.1| PREDICTED: Y-box-binding protein 2-like [Callithrix jacchus] Length = 390 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 103 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 159 Query: 61 ANGKYSAEN 69 G +A Sbjct: 160 -KGAEAANV 167 >gi|150024384|ref|YP_001295210.1| cold shock protein [Flavobacterium psychrophilum JIP02/86] gi|149770925|emb|CAL42390.1| Probable cold shock protein [Flavobacterium psychrophilum JIP02/86] Length = 66 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 7/71 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KGYGFIT + E+G D+F+H S + + L EG V+Y+ + Sbjct: 1 MRTGTVKFFNESKGYGFITDD---ETGKDIFVHASGIKAE---ELREGDKVSYE-EEEGR 53 Query: 62 NGKYSAENLKL 72 G+ +A+ + + Sbjct: 54 KGRVAAQVVVI 64 >gi|254823203|ref|ZP_05228204.1| CspB [Mycobacterium intracellulare ATCC 13950] Length = 135 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V + + Sbjct: 1 MPTGKVKWYDADKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 54 Query: 62 NGKYSAENLKLVPK 75 G A +LKL+ Sbjct: 55 RGPQ-ALSLKLIEP 67 >gi|307947474|ref|ZP_07662807.1| cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4] gi|307769292|gb|EFO28520.1| cold-shock DNA-binding domain protein [Roseibium sp. TrichSKD4] Length = 70 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G+IK++N D+G+GFITPE G DVF+H +A AG+ EG +++ ++D Sbjct: 1 MRETGTIKFFNHDRGFGFITPES---GGKDVFVHITAFEQAGMPAPEEGAKISF-VAEDD 56 Query: 61 A--NGKYSAE 68 GK +A+ Sbjct: 57 RRGRGKQAAQ 66 >gi|118466199|ref|YP_880259.1| cold shock DNA-binding domain-containing protein [Mycobacterium avium 104] gi|254773885|ref|ZP_05215401.1| CspB [Mycobacterium avium subsp. avium ATCC 25291] gi|118167486|gb|ABK68383.1| 'Cold-shock' DNA-binding domain [Mycobacterium avium 104] Length = 135 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V + + Sbjct: 1 MPTGKVKWYDADKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 54 Query: 62 NGKYSAENLKLVPK 75 G A +LKL+ Sbjct: 55 RGPQ-ALSLKLIEP 67 >gi|13475110|ref|NP_106674.1| cold-shock protein [Mesorhizobium loti MAFF303099] gi|14025861|dbj|BAB52460.1| cold-shock protein [Mesorhizobium loti MAFF303099] Length = 68 Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KWYNP KG+GFI PE D+F+H +A+ +GL L EGQ V Q Sbjct: 1 MESEGTVKWYNPQKGFGFIAPE---NGEKDIFVHATALTRSGLSMLMEGQKVFVQCGQGK 57 Query: 61 AN 62 Sbjct: 58 KG 59 >gi|289749391|ref|ZP_06508769.1| LOW QUALITY PROTEIN: cold shock protein B cspB [Mycobacterium tuberculosis T92] gi|289689978|gb|EFD57407.1| LOW QUALITY PROTEIN: cold shock protein B cspB [Mycobacterium tuberculosis T92] Length = 136 Score = 78.1 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+PDKG+GF++ E G+DV++ SA+ G+ L GQ V + + Sbjct: 1 MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIA-SGR 54 Query: 62 NGKYSAENLKLVPK 75 G A +L+L+ Sbjct: 55 RGPQ-ALSLRLIEP 67 >gi|242000494|ref|XP_002434890.1| PIN domain-containing RNA-binding protein, putative [Ixodes scapularis] gi|215498220|gb|EEC07714.1| PIN domain-containing RNA-binding protein, putative [Ixodes scapularis] Length = 315 Score = 78.1 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI + E D+F+H++A+ + ++ EG+ V +D V + Sbjct: 19 GTVKWFNVKNGYGFINRNDTRE---DIFVHQTAITRNNPQKIMRSVGEGETVEFDVVVGE 75 Query: 61 ANGKYSAEN 69 G+ +A Sbjct: 76 -KGREAANV 83 >gi|148688938|gb|EDL20885.1| cold shock domain protein A, isoform CRA_a [Mus musculus] Length = 405 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 129 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 185 Query: 61 ANGKYSAEN 69 G +A Sbjct: 186 -KGAEAANV 193 >gi|11493820|gb|AAG35657.1|AF204736_1 cold shock protein C [Yersinia enterocolitica] Length = 46 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50 +G +KW+N KG+GFITP + DVF+H SA+ G L EGQ Sbjct: 2 KGQVKWFNESKGFGFITP---ADGSKDVFVHFSAIQDQGFKTLAEGQ 45 >gi|270158155|ref|ZP_06186812.1| cold shock domain family protein [Legionella longbeachae D-4968] gi|289163584|ref|YP_003453722.1| stress protein, member of the CspA-family [Legionella longbeachae NSW150] gi|269990180|gb|EEZ96434.1| cold shock domain family protein [Legionella longbeachae D-4968] gi|288856757|emb|CBJ10568.1| stress protein, member of the CspA-family [Legionella longbeachae NSW150] Length = 69 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW+N KG+GF+ G D F+H SA++ G L EG V + Sbjct: 6 RGTVKWFNESKGFGFLE-----SGGKDYFVHFSAISGTGFKTLAEGATVVFKPSNGQKG- 59 Query: 64 KYSAENLKLV 73 AE +++V Sbjct: 60 -PQAEEVEVV 68 >gi|3831558|gb|AAC70000.1| major cold shock protein [Pediococcus pentosaceus] Length = 50 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 5/55 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 KG+GFIT E G DVF+H SA+ S G L EGQ V++D ++D G +A Sbjct: 1 KGFGFITRE----DGSDVFVHFSAIQSDGFKTLEEGQSVSFDVEESD-RGPQAAN 50 >gi|74007475|ref|XP_549033.2| PREDICTED: similar to cold shock domain protein A [Canis familiaris] Length = 383 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 RGS+KW+N GYGFI+ + E DVF+H++A+ ++ +G+ V +D VQ Sbjct: 70 RGSVKWFNVKNGYGFISRHDTQE---DVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQG 126 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 127 E-RGTEAANV 135 >gi|42521032|ref|NP_966947.1| cold-shock domain-contain protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|58698415|ref|ZP_00373326.1| cold-shock domain family protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225630894|ref|YP_002727685.1| cold-shock domain family protein [Wolbachia sp. wRi] gi|225677316|ref|ZP_03788293.1| cold-shock domain family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|42410773|gb|AAS14881.1| cold-shock domain family protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|58535070|gb|EAL59158.1| cold-shock domain family protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225590643|gb|EEH11893.1| cold-shock domain family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225592875|gb|ACN95894.1| cold-shock domain family protein [Wolbachia sp. wRi] Length = 83 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 16/84 (19%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLT--------EGQL 51 + G++KW+N +KGYGFI PEG G DVF+H S + +G+ L +G+ Sbjct: 1 MEFGNVKWFNAEKGYGFIKPEGK---GGDVFVHISTLERSGIRPEALKGENKEKGIKGER 57 Query: 52 VTYDY-VQNDANG--KYSAENLKL 72 V+Y+ + NG K SA NL+L Sbjct: 58 VSYEVKEERGRNGEDKKSAINLRL 81 >gi|294500244|ref|YP_003563944.1| cold shock protein [Bacillus megaterium QM B1551] gi|294350181|gb|ADE70510.1| cold shock protein [Bacillus megaterium QM B1551] Length = 70 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 H+G++K +N KG GFITPE + +VF+H +A+ NL+EGQ V ++ Q A Sbjct: 4 HKGTVKSFNESKGSGFITPE---DGSKEVFVHSNAIDHEEYKNLSEGQKVEFEI-QEGAK 59 Query: 63 GKYS 66 G + Sbjct: 60 GPSA 63 >gi|224095946|ref|XP_002188961.1| PREDICTED: Rous sarcoma virus transcription enhancer factor II [Taeniopygia guttata] Length = 420 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 213 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 269 Query: 61 ANGKYSAEN 69 G +A Sbjct: 270 -KGAEAANV 277 >gi|126335948|ref|XP_001376438.1| PREDICTED: similar to Nsep1 protein [Monodelphis domestica] Length = 290 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI + + E DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 19 GTVKWFNVRNGYGFINRDDTKE---DVFVHQTAIKKNNPRKYLRSVGDGEPVEFDVVEGE 75 Query: 61 ANGKYSAEN 69 G +A Sbjct: 76 -KGVEAANV 83 >gi|296169637|ref|ZP_06851255.1| cold-shock domain family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895634|gb|EFG75330.1| cold-shock domain family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 137 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V + + Sbjct: 1 MPTGKVKWYDADKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 54 Query: 62 NGKYSAENLKLVPK 75 G A +LKL+ Sbjct: 55 RGPQ-ALSLKLIEP 67 >gi|325286936|ref|YP_004262726.1| cold-shock DNA-binding domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322390|gb|ADY29855.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM 7489] Length = 63 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFITP+ + G DVF+H S + + EG V+YD + Sbjct: 1 MSNGTVKFFNDSKGFGFITPD---DGGKDVFVHISGLTHE----IAEGDKVSYDVEEGKK 53 Query: 62 NGKYSAENLKLV 73 +A N++++ Sbjct: 54 G--PNAVNVEVL 63 >gi|39939157|ref|NP_950923.1| cold shock protein [Onion yellows phytoplasma OY-M] gi|39722266|dbj|BAD04756.1| cold shock protein [Onion yellows phytoplasma OY-M] Length = 74 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60 +G+ +W++ DKGYGFI + G D+F+H S++ + G L E V + + D Sbjct: 6 QQGTCRWFSKDKGYGFIV----SVDGKDIFVHYSSIQTEVFGRKTLNENDKVEFTVKEGD 61 Query: 61 ANGKYSAENLKLV 73 A ++ +V Sbjct: 62 RG--AQAVDVVVV 72 >gi|332266403|ref|XP_003282197.1| PREDICTED: y-box-binding protein 2-like [Nomascus leucogenys] Length = 430 Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 169 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 225 Query: 61 ANGKYSAEN 69 G +A Sbjct: 226 -KGAEAANV 233 >gi|260185766|ref|ZP_05763240.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A] gi|289446436|ref|ZP_06436180.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A] gi|289419394|gb|EFD16595.1| cold shock protein B cspB [Mycobacterium tuberculosis CPHL_A] Length = 135 Score = 77.7 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+PDKG+GF++ E G+DV++ SA+ G+ L GQ V + + Sbjct: 1 MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIA-SGR 54 Query: 62 NGKYSAENLKLVPK 75 G A +L+L+ Sbjct: 55 RGPQ-ALSLRLIEP 67 >gi|15608011|ref|NP_215386.1| cold shock-like protein B CspB [Mycobacterium tuberculosis H37Rv] gi|15840284|ref|NP_335321.1| cold-shock domain-contain protein [Mycobacterium tuberculosis CDC1551] gi|31792059|ref|NP_854552.1| cold shock-like protein B CspB [Mycobacterium bovis AF2122/97] gi|121636794|ref|YP_977017.1| putative cold shock-like protein B cspB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660648|ref|YP_001282171.1| cold-shock domain-contain protein [Mycobacterium tuberculosis H37Ra] gi|215402667|ref|ZP_03414848.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987] gi|215410456|ref|ZP_03419264.1| cold shock protein B cspB [Mycobacterium tuberculosis 94_M4241A] gi|215429728|ref|ZP_03427647.1| cold shock protein B cspB [Mycobacterium tuberculosis EAS054] gi|215445010|ref|ZP_03431762.1| cold shock protein B cspB [Mycobacterium tuberculosis T85] gi|218752536|ref|ZP_03531332.1| cold shock protein B cspB [Mycobacterium tuberculosis GM 1503] gi|219556733|ref|ZP_03535809.1| cold shock protein B cspB [Mycobacterium tuberculosis T17] gi|224989265|ref|YP_002643952.1| putative cold shock-like protein B [Mycobacterium bovis BCG str. Tokyo 172] gi|254549847|ref|ZP_05140294.1| cold shock protein B cspB [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199890|ref|ZP_05767381.1| cold shock protein B cspB [Mycobacterium tuberculosis T46] gi|260204068|ref|ZP_05771559.1| cold shock protein B cspB [Mycobacterium tuberculosis K85] gi|289442280|ref|ZP_06432024.1| cold shock protein B cspB [Mycobacterium tuberculosis T46] gi|289568834|ref|ZP_06449061.1| cold shock protein B cspB [Mycobacterium tuberculosis T17] gi|289573493|ref|ZP_06453720.1| cold shock protein B cspB [Mycobacterium tuberculosis K85] gi|289752926|ref|ZP_06512304.1| cold-shock protein B cspB [Mycobacterium tuberculosis EAS054] gi|289756956|ref|ZP_06516334.1| cold shock protein B cspB [Mycobacterium tuberculosis T85] gi|289761002|ref|ZP_06520380.1| cold shock-like protein B cspB [Mycobacterium tuberculosis GM 1503] gi|294996351|ref|ZP_06802042.1| cold shock protein [Mycobacterium tuberculosis 210] gi|297633388|ref|ZP_06951168.1| cold shock protein [Mycobacterium tuberculosis KZN 4207] gi|297730373|ref|ZP_06959491.1| cold shock protein [Mycobacterium tuberculosis KZN R506] gi|306774995|ref|ZP_07413332.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu001] gi|306782090|ref|ZP_07420427.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu002] gi|306783539|ref|ZP_07421861.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu003] gi|306787904|ref|ZP_07426226.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu004] gi|306792245|ref|ZP_07430547.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu005] gi|306796643|ref|ZP_07434945.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu006] gi|306802530|ref|ZP_07439198.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu008] gi|306806712|ref|ZP_07443380.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu007] gi|306966908|ref|ZP_07479569.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu009] gi|306971103|ref|ZP_07483764.1| putative cold-shock DNA-binding domain protein [Mycobacterium tuberculosis SUMu010] gi|307078831|ref|ZP_07488001.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu011] gi|313657699|ref|ZP_07814579.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN V2475] gi|2916930|emb|CAA17677.1| PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB [Mycobacterium tuberculosis H37Rv] gi|13880445|gb|AAK45135.1| cold-shock domain family protein [Mycobacterium tuberculosis CDC1551] gi|31617646|emb|CAD93756.1| PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB [Mycobacterium bovis AF2122/97] gi|121492441|emb|CAL70909.1| Probable cold shock-like protein B cspB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148504800|gb|ABQ72609.1| cold-shock domain family protein [Mycobacterium tuberculosis H37Ra] gi|224772378|dbj|BAH25184.1| putative cold shock-like protein B [Mycobacterium bovis BCG str. Tokyo 172] gi|289415199|gb|EFD12439.1| cold shock protein B cspB [Mycobacterium tuberculosis T46] gi|289537924|gb|EFD42502.1| cold shock protein B cspB [Mycobacterium tuberculosis K85] gi|289542588|gb|EFD46236.1| cold shock protein B cspB [Mycobacterium tuberculosis T17] gi|289693513|gb|EFD60942.1| cold-shock protein B cspB [Mycobacterium tuberculosis EAS054] gi|289708508|gb|EFD72524.1| cold shock-like protein B cspB [Mycobacterium tuberculosis GM 1503] gi|289712520|gb|EFD76532.1| cold shock protein B cspB [Mycobacterium tuberculosis T85] gi|308216490|gb|EFO75889.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu001] gi|308325206|gb|EFP14057.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu002] gi|308331700|gb|EFP20551.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu003] gi|308335465|gb|EFP24316.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu004] gi|308339263|gb|EFP28114.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu005] gi|308342940|gb|EFP31791.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu006] gi|308346825|gb|EFP35676.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu007] gi|308350742|gb|EFP39593.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu008] gi|308355403|gb|EFP44254.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu009] gi|308359355|gb|EFP48206.1| putative cold-shock DNA-binding domain protein [Mycobacterium tuberculosis SUMu010] gi|308363262|gb|EFP52113.1| cold shock protein B cspB [Mycobacterium tuberculosis SUMu011] gi|326904909|gb|EGE51842.1| cold shock protein B cspB [Mycobacterium tuberculosis W-148] Length = 135 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+PDKG+GF++ E G+DV++ SA+ G+ L GQ V + + Sbjct: 1 MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIA-SGR 54 Query: 62 NGKYSAENLKLVPK 75 G A +L+L+ Sbjct: 55 RGPQ-ALSLRLIEP 67 >gi|323136438|ref|ZP_08071520.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] gi|322398512|gb|EFY01032.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] Length = 224 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GF+ S + G DVF+H S + +G+ L EGQ VT V + A G+ Sbjct: 161 GKVKWFDETKGFGFVQ---SNDGGKDVFVHISILGPSGVSRLVEGQPVTMQVV-DTAKGR 216 Query: 65 YS 66 + Sbjct: 217 EA 218 Score = 56.9 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+ DKG+GF+ D FLH AV +AG L G + + G+ Sbjct: 57 VKWFKTDKGFGFVE---LANGTGDAFLHIGAVQAAGYDTLPPGAKLQVQVT-SSVKGQQV 112 Query: 67 AENLKL 72 A L + Sbjct: 113 ARILDV 118 >gi|222109154|ref|YP_002551419.1| CspA-like protein [Agrobacterium vitis S4] gi|221738428|gb|ACM39293.1| CspA-like protein [Agrobacterium vitis S4] Length = 99 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 5/76 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KGYGFIT + + G DVFLH S V A L L G + Y V Sbjct: 1 MPTGKLKWFDTTKGYGFITSD---DGGPDVFLHLSKVTEANLPTLQPGVRLRY--VLGRQ 55 Query: 62 NGKYSAENLKLVPKSS 77 K SA +L L+P + Sbjct: 56 GNKVSAHDLSLMPDEA 71 >gi|189499792|ref|YP_001959262.1| cold-shock DNA-binding domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189495233|gb|ACE03781.1| cold-shock DNA-binding domain protein [Chlorobium phaeobacteroides BS1] Length = 96 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQN 59 M + +KW++ KGYGFI + + G+D+F+H SA+ S L + V ++ Q Sbjct: 1 MSRKSKVKWFDGKKGYGFIV---NPDGGEDIFVHFSAIVSEQSFKVLNQDAEVEFEIDQT 57 Query: 60 DANGKYSAENL 70 A+N+ Sbjct: 58 QKG--MQAKNV 66 >gi|15234010|ref|NP_195580.1| GRP2 (GLYCINE RICH PROTEIN 2); double-stranded DNA binding / mRNA binding / nucleic acid binding / single-stranded DNA binding [Arabidopsis thaliana] gi|13430580|gb|AAK25912.1|AF360202_1 putative glycine-rich protein GRP2 [Arabidopsis thaliana] gi|14326487|gb|AAK60289.1|AF385696_1 AT4g38680/F20M13_240 [Arabidopsis thaliana] gi|259445|gb|AAB24074.1| glycine-rich protein [Arabidopsis thaliana] gi|4467155|emb|CAB37524.1| glycine-rich protein 2 (GRP2) [Arabidopsis thaliana] gi|7270851|emb|CAB80532.1| glycine-rich protein 2 (GRP2) [Arabidopsis thaliana] gi|14532850|gb|AAK64107.1| putative glycine-rich protein 2 [Arabidopsis thaliana] gi|22137152|gb|AAM91421.1| AT4g38680/F20M13_240 [Arabidopsis thaliana] gi|332661564|gb|AEE86964.1| glycine rich protein 2 [Arabidopsis thaliana] Length = 203 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 33/45 (73%), Gaps = 3/45 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46 +GS+KW++ KG+GFITP+ + GDD+F+H+S++ S G +L Sbjct: 10 RRKGSVKWFDTQKGFGFITPD---DGGDDLFVHQSSIRSEGFRSL 51 >gi|20803992|emb|CAD31569.1| PUTATIVE TRANSCRIPTION REGULATOR COLD SHOCK PROTEIN [Mesorhizobium loti R7A] Length = 200 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++KWYNP+KG+GFI PE D+F+H +A+ +GL L EGQ V Q Sbjct: 138 TVKWYNPEKGFGFIAPE---NGEKDIFVHATALTRSGLSMLMEGQKVFVQCGQGKKG 191 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 + W+N KG+GF+ ++ +LH + +AG ++EG + ++ G Sbjct: 47 VVWFNTSKGFGFVKLPQGIQA----YLHIRVLEAAGSRGVSEGTRLKVTTEESPRGGHQV 102 Query: 67 AENLKLVPKSS 77 A+ L++ +++ Sbjct: 103 AQVLEVGDQTA 113 >gi|325114942|emb|CBZ50498.1| cold-shock protein, DNA-binding, related [Neospora caninum Liverpool] Length = 125 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG KW++ KG+GFIT E G D+F+H++ + + G NL EG+ V + VQ Sbjct: 5 IQRGHCKWFDSKKGFGFIT----AEDGTDLFVHQTEIKAQGFRNLAEGESVEFR-VQVGH 59 Query: 62 NGKYSAENLK 71 +GK A + Sbjct: 60 DGKRKAVGVT 69 >gi|296128179|ref|YP_003635429.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] gi|296019994|gb|ADG73230.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] Length = 418 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ WY+ +KG+GF+ P+ + G+DVF H ++ GL L EG VT+D V + Sbjct: 158 GTVTWYDAEKGFGFVAPD---DGGEDVFAHAKSLVG-GLSELVEGDRVTFDVVDGEKG-- 211 Query: 65 YSAENLKLV 73 A +++LV Sbjct: 212 PQARDIRLV 220 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + + +++W++ ++G+GF+ + +D+F+H S + L EGQ V Y+ + D Sbjct: 1 MPQATVRWFDAERGFGFLA---LGDDAEDLFVHASEIIGEP-RVLREGQEVEYELGEGDR 56 Query: 62 NGKYSAENLKL 72 A +++ Sbjct: 57 G--PQARKVRV 65 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++ WY P KGYGF+TP+G G ++F+H SAV G+ L +GQ V + V + Sbjct: 77 QLGTVSWYEPAKGYGFLTPDG---GGAEIFVHSSAVVGGGV--LHDGQRVAFLVVDGEKG 131 Query: 63 GK 64 + Sbjct: 132 PQ 133 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++ Y+ D+G+GFI P+ GDD+F+H S V L EG V Y+ Q+D Sbjct: 250 EGTVARYDADRGFGFIRPDA---GGDDLFVHVSVVRGD--EPLEEGDRVRYEVRQSDRG- 303 Query: 64 KYSAENLKLV 73 A+ ++LV Sbjct: 304 -PQADRVELV 312 >gi|240171972|ref|ZP_04750631.1| cold shock-like protein B CspB [Mycobacterium kansasii ATCC 12478] Length = 134 Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V + + Sbjct: 1 MPTGKVKWYDSEKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 54 Query: 62 NGKYSAENLKLVPK 75 G A +LKL+ Sbjct: 55 RGPQ-ALSLKLIDP 67 >gi|54298263|ref|YP_124632.1| hypothetical protein lpp2321 [Legionella pneumophila str. Paris] gi|53752048|emb|CAH13474.1| hypothetical protein lpp2321 [Legionella pneumophila str. Paris] Length = 69 Score = 77.7 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW+N DKG+GFI SG D F+H S++ S G L +G V + + Sbjct: 6 RGKVKWFNKDKGFGFIE-----SSGKDYFVHFSSIQSGGFKTLPDGATVLFKMGKGQKG- 59 Query: 64 KYSAENLKLVP 74 AE ++++ Sbjct: 60 -PQAEEVEVIK 69 >gi|1160331|dbj|BAA03376.1| dbpA murine homologue [Mus musculus] Length = 308 Score = 77.7 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 Query: 61 ANGKYSAEN 69 G +A Sbjct: 142 -KGAEAANV 149 >gi|294508943|ref|YP_003565832.1| cold-shock DNA-binding domain protein [Bacillus megaterium QM B1551] gi|294352247|gb|ADE72569.1| cold-shock DNA-binding domain protein [Bacillus megaterium QM B1551] Length = 69 Score = 77.7 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G+IKWYN +KGYGFIT E TE +F+ ++ G +L EGQ V++D Sbjct: 3 RQNGTIKWYNFNKGYGFITREDETE----IFVSYRSIEGNGYADLREGQKVSFDVETGQK 58 Query: 62 NGKYSAENLKLV 73 A ++++ Sbjct: 59 G--LEAVRVRVL 68 >gi|311268286|ref|XP_003131986.1| PREDICTED: y-box-binding protein 2-like [Sus scrofa] Length = 394 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 98 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154 Query: 61 ANGKYSAEN 69 G +A Sbjct: 155 -KGAEAANV 162 >gi|301778155|ref|XP_002924500.1| PREDICTED: hypothetical protein LOC100473556 [Ailuropoda melanoleuca] Length = 199 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 49 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 105 Query: 61 ANGKYSAEN 69 G +A Sbjct: 106 -KGAEAANV 113 >gi|328545337|ref|YP_004305446.1| Cold-shock DNA-binding domain protein [polymorphum gilvum SL003B-26A1] gi|326415079|gb|ADZ72142.1| Cold-shock DNA-binding domain protein [Polymorphum gilvum SL003B-26A1] Length = 66 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++KW++ +G G I P GDDV + ++ +G+ +L EGQLV +D Sbjct: 1 MNHGNVKWFDSRRGIGAIEPH----EGDDVIVELDSLRRSGIESLKEGQLVAFDMAW--R 54 Query: 62 NGKYSAENLKLV 73 G+ AE++K++ Sbjct: 55 AGRSLAEDVKVL 66 >gi|3821911|gb|AAC69697.1| major cold shock protein [Lactococcus lactis subsp. lactis] Length = 50 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 5/55 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 KG+GFIT TE G+DVF H SA+ + G L EGQ VT+D V+ G +A Sbjct: 1 KGFGFIT----TEEGNDVFAHFSAIQTDGFKTLDEGQKVTFD-VEEGPRGPQAAN 50 >gi|182624210|ref|ZP_02951996.1| cold shock protein [Clostridium perfringens D str. JGS1721] gi|177910624|gb|EDT72992.1| cold shock protein [Clostridium perfringens D str. JGS1721] Length = 69 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 7/71 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62 G +KW+N +K YGFI S + GDDVF+H S V G +L EG+ V++D + + Sbjct: 5 TGIVKWFNQEKCYGFI----SCDEGDDVFVHISQVKEKGPEKDLHEGESVSFDISEGEKG 60 Query: 63 GKYSAENLKLV 73 A N++ + Sbjct: 61 --PMATNVQKL 69 >gi|310827425|ref|YP_003959782.1| cold shock protein CspA [Eubacterium limosum KIST612] gi|308739159|gb|ADO36819.1| cold shock protein CspA [Eubacterium limosum KIST612] Length = 66 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N +KG+GFI E+G+D+F+ S++ +L +G V Y+ Q D Sbjct: 1 MSNGTVKWFNSNKGFGFIE----GENGEDIFVLFSSIVGGNCESLRDGDKVIYETEQGDR 56 Query: 62 NGKYSAENLKLV 73 + A++++LV Sbjct: 57 --QLRAKSVQLV 66 >gi|291457452|ref|ZP_06596842.1| cold-shock domain protein [Bifidobacterium breve DSM 20213] gi|291381287|gb|EFE88805.1| cold-shock domain protein [Bifidobacterium breve DSM 20213] Length = 129 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++W++ KGYGFIT +E G DVFL A+ G+ L +G V Y V + Sbjct: 1 MPTGRVRWFDAAKGYGFIT----SEEGKDVFLPAQAL-PTGVNTLRKGAKVEYSVV-DGR 54 Query: 62 NGKYSAENLKLVPKS 76 G A ++KL+ S Sbjct: 55 RGPQ-AMDVKLIASS 68 >gi|146299007|ref|YP_001193598.1| cold-shock DNA-binding domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153425|gb|ABQ04279.1| cold-shock DNA-binding protein family [Flavobacterium johnsoniae UW101] Length = 64 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 7/68 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KGYGFIT E E+G D+F+H S + + L EG V+Y+ + Sbjct: 1 MRTGTVKFFNESKGYGFITDE---ETGKDIFVHASGINAE---ELREGDRVSYE-EEEGR 53 Query: 62 NGKYSAEN 69 GK +A+ Sbjct: 54 KGKVAAKV 61 >gi|37525576|ref|NP_928920.1| hypothetical protein plu1632 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785004|emb|CAE13925.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 80 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +KW++ KGYGFI+P + G D+F++R A+A+ +LTEGQ V + ++ Sbjct: 14 LKMGRVKWFDERKGYGFISP---QDGGQDIFVNRKAIANTKNKSLTEGQDVEFSIIRKG 69 >gi|61217666|sp|Q9Z2C8|YBOX2_MOUSE RecName: Full=Y-box-binding protein 2; AltName: Full=FRGY2 homolog; AltName: Full=Germ cell-specific Y-box-binding protein gi|4071321|gb|AAC98673.1| Y-box protein MSY2 [Mus musculus] Length = 360 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 98 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154 Query: 61 ANGKYSAENLK 71 + A N+ Sbjct: 155 KGAR--AANVT 163 >gi|14270383|emb|CAC39436.1| cold-shock domain protein [Oryzias latipes] Length = 366 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D ++ Sbjct: 4 QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEA 60 Query: 60 DANGKYSAEN 69 A G +A Sbjct: 61 -AKGSEAANV 69 >gi|296227166|ref|XP_002759249.1| PREDICTED: Y-box-binding protein 2-like, partial [Callithrix jacchus] Length = 253 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI+ + E DVF+H++A+ L ++ +G+ V +D V Sbjct: 97 GTVKWFNVRNGYGFISRNDTKE---DVFVHQTAIKRNNPRKFLRSVGDGETVEFDVV-GG 152 Query: 61 ANGKYSAEN 69 G +A Sbjct: 153 EKGPEAANV 161 >gi|189054669|dbj|BAG37519.1| unnamed protein product [Homo sapiens] Length = 364 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 96 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152 Query: 61 ANGKYSAENLK 71 A N+ Sbjct: 153 KG--AEATNVT 161 >gi|309777855|ref|ZP_07672801.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914416|gb|EFP60210.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 65 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +K +N +KGYGFIT E G DVF H S + G + V +D V+ D Sbjct: 2 RGKVKMFNQEKGYGFIT----LEDGKDVFFHYSQLMMEGFKTIDADAEVEFDVVETDRG- 56 Query: 64 KYSAENL 70 A N+ Sbjct: 57 -LQAHNI 62 >gi|330718236|ref|ZP_08312836.1| cold-shock DNA-binding protein family protein [Leuconostoc fallax KCTC 3537] Length = 74 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K + D+GYG+ITP+ E GDD+F+H + + G +L +G+ VTY VQ Sbjct: 1 MKIGKVKIWQQDRGYGYITPD---EGGDDIFVHFNGIDMPGFKSLHQGEAVTYVLVQGY- 56 Query: 62 NGKYSAENLKLVPKSSN 78 G +A+ + + ++ Sbjct: 57 KGLQAAQVRPVDSQGAS 73 >gi|301791962|ref|XP_002930949.1| PREDICTED: nuclease-sensitive element-binding protein 1-like, partial [Ailuropoda melanoleuca] Length = 416 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 RGS+KW+N GYGFI+ + E DVF+H+ A+ ++ +G+ V +D VQ Sbjct: 70 RGSVKWFNVKNGYGFISRHDTQE---DVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQG 126 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 127 E-RGTEAANV 135 >gi|293400347|ref|ZP_06644493.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306747|gb|EFE47990.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 65 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K +N +KGYGFIT E G DVF H S + G + V ++ V+ + Sbjct: 2 QGKVKMFNQEKGYGFIT----LEDGRDVFFHYSQLMMEGFKTIDADAKVEFELVETERG- 56 Query: 64 KYSAENL 70 A N+ Sbjct: 57 -LQAHNI 62 >gi|144900094|emb|CAM76958.1| cold shock DNA-binding domain protein [Magnetospirillum gryphiswaldense MSR-1] Length = 209 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K+++ +KG+GF+ + + G DVF+H A+ +G+ L GQ V Q Sbjct: 145 EGVVKFFSAEKGFGFVQTD---QGGKDVFVHIKALERSGIKALETGQRVRCTTTQGQKG- 200 Query: 64 KYSAENLKLV 73 A+ + L+ Sbjct: 201 -PQADTVALI 209 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 ++KW+N KG+GF+ P ++ D FLH SA+ AGL + EG + D Q + Sbjct: 53 TATVKWFNASKGFGFVAP---SDGTPDAFLHISALERAGLTQVAEGTTLVVDLGQGNRGP 109 Query: 64 K 64 + Sbjct: 110 Q 110 >gi|194246689|ref|YP_002004328.1| Cold shock-like protein [Candidatus Phytoplasma mali] gi|193807046|emb|CAP18482.1| Cold shock-like protein [Candidatus Phytoplasma mali] Length = 85 Score = 76.9 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +W+N DKG+GF+ S D+F H++ + G +L EG+ V + VQ + G Sbjct: 14 KGVCRWFNKDKGFGFLQKLDS--DSQDIFFHQTDIKCEGFRSLDEGEEVEFTLVQGE-KG 70 Query: 64 KYSAENLKLVPKS 76 + E ++ +S Sbjct: 71 PQAIEIVRFTKQS 83 >gi|313901260|ref|ZP_07834747.1| cold shock protein CspB [Clostridium sp. HGF2] gi|312953868|gb|EFR35549.1| cold shock protein CspB [Clostridium sp. HGF2] Length = 65 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +K +N +KGYGFIT E G DVF H S + G + V +D V+ D Sbjct: 2 RGKVKMFNQEKGYGFIT----LEDGKDVFFHYSQLMMEGFKTIDADAEVEFDLVETDRG- 56 Query: 64 KYSAENL 70 A N+ Sbjct: 57 -LQAHNI 62 >gi|120405994|ref|YP_955823.1| cold-shock DNA-binding domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119958812|gb|ABM15817.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii PYR-1] Length = 136 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V + Sbjct: 1 MPTGRVKWYDAEKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGVAAGRR 55 Query: 62 NGKYSAENLKLVPK 75 A +LKL+ Sbjct: 56 G--PQALSLKLIDP 67 >gi|114666139|ref|XP_511973.2| PREDICTED: y-box-binding protein 2 [Pan troglodytes] Length = 365 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 97 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153 Query: 61 ANGKYSAENLK 71 A N+ Sbjct: 154 KG--AEATNVT 162 >gi|51494815|gb|AAH27785.1| Csda protein [Mus musculus] Length = 299 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 Query: 61 ANGKYSAEN 69 G +A Sbjct: 142 -KGAEAANV 149 >gi|47059495|ref|NP_620817.2| DNA-binding protein A long isoform [Mus musculus] gi|82524639|ref|NP_114185.2| DNA-binding protein A [Rattus norvegicus] gi|61212920|sp|Q9JKB3|DBPA_MOUSE RecName: Full=DNA-binding protein A; AltName: Full=Cold shock domain-containing protein A; AltName: Full=Y-box protein 3 gi|29387050|gb|AAH48242.1| Cold shock domain protein A [Mus musculus] gi|76779326|gb|AAI05779.1| Cold shock domain protein A [Rattus norvegicus] Length = 361 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 Query: 61 ANGKYSAEN 69 G +A Sbjct: 142 -KGAEAANV 149 >gi|325297104|ref|NP_001191560.1| Y-box factor homolog [Aplysia californica] gi|1175568|sp|P41824|YBOXH_APLCA RecName: Full=Y-box factor homolog; AltName: Full=APY1 gi|409419|gb|AAA60373.1| Y-Box factor [Aplysia californica] Length = 253 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI + + E DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 35 GTVKWFNVKSGYGFINRDDTKE---DVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGE 91 Query: 61 ANGKYSAEN 69 G +A Sbjct: 92 -KGNEAANV 99 >gi|325478635|gb|EGC81747.1| major cold shock protein CspA [Anaerococcus prevotii ACS-065-V-Col13] Length = 66 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +K ++ KG+GFIT E G+D+F+H S + G L Q+V +D + Sbjct: 1 MKRGEVKIFDNKKGFGFITCE-----GEDLFVHYSDIDKDGFKALYPKQIVEFDRIDAPR 55 Query: 62 NGKYSAENLKLVP 74 A N+K+V Sbjct: 56 G--PQAINVKIVE 66 >gi|297563111|ref|YP_003682085.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847559|gb|ADH69579.1| cold-shock DNA-binding domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 127 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ DKG+GF+T + G +VF+H S++ G +L GQ V + + Sbjct: 1 MPTGKVKWYDGDKGFGFLTRD----DGGEVFVHSSSL-PPGTTSLRPGQKVDFGVAEGRK 55 Query: 62 NGKYSAENLKLVPKSSN 78 A ++L+ + Sbjct: 56 G--AQALQVRLLEDQHS 70 >gi|10185723|gb|AAG14418.1|AF248546_1 Y-box protein 3 long isoform [Mus musculus] Length = 361 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 Query: 61 ANGKYSAEN 69 G +A Sbjct: 142 -KGAEAANV 149 >gi|7385223|gb|AAF61741.1| RNA binding protein MSY4 [Mus musculus] Length = 361 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 Query: 61 ANGKYSAEN 69 G +A Sbjct: 142 -KGAEAANV 149 >gi|296445795|ref|ZP_06887747.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] gi|296256623|gb|EFH03698.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] Length = 221 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GF+ S + G DVF+H S + +G+ +L EGQ VT V + A G+ Sbjct: 158 GKVKWFDETKGFGFVQ---SNDGGKDVFVHISILGPSGVNHLAEGQPVTMQVV-DTAKGR 213 Query: 65 YS 66 + Sbjct: 214 EA 215 Score = 53.8 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+ P+KG+GF+ D FLH AV +AG L G + + G+ Sbjct: 60 VKWFKPEKGFGFVE---LGNGTGDAFLHIGAVQAAGYDALPPGAKLKVTVT-SSVKGQQV 115 Query: 67 AENLKL 72 + L++ Sbjct: 116 SRVLEV 121 >gi|40062712|gb|AAR37625.1| cold shock DNA-binding domain protein [uncultured marine bacterium 314] Length = 67 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G +KW+N KGYGFI E DVF+H SA +A L L EG +T++ D Sbjct: 1 MSIKGKVKWFNGAKGYGFIEREDKE---KDVFVHASAAEAASLQ-LNEGDALTFEVESGD 56 Query: 61 ANGKYSAENLK 71 SA NL+ Sbjct: 57 KG--PSAVNLQ 65 >gi|254473739|ref|ZP_05087134.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio sp. JE062] gi|211957125|gb|EEA92330.1| putative 'Cold-shock' DNA-binding domain protein [Pseudovibrio sp. JE062] Length = 70 Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N DKGYGFITP + D+F+H +A +G+ EG +T+ ++ Sbjct: 1 MRQDGTLKFFNHDKGYGFITP---GDGSKDIFVHITAFERSGIAVPAEGAAITFVAEEDR 57 Query: 61 ANGKYSAENLKL 72 A ++L Sbjct: 58 RGRGLQASQIEL 69 >gi|182420146|ref|ZP_02951377.1| conserved domain protein [Clostridium butyricum 5521] gi|237668829|ref|ZP_04528813.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375948|gb|EDT73538.1| conserved domain protein [Clostridium butyricum 5521] gi|237657177|gb|EEP54733.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 69 Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDA 61 + G++KWY+ +KGYGFI S + G+DVF H S + G +L EG+ VT+ ++D Sbjct: 4 NTGTVKWYDREKGYGFI----SCDEGNDVFAHHSQIKDNGPEKDLKEGESVTFSIEESDK 59 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 60 G--PMAINIQ 67 >gi|57086603|ref|XP_546585.1| PREDICTED: similar to Y-box binding protein-2 (Germ cell specific Y-box binding protein) (FRGY2 homolog) [Canis familiaris] Length = 361 Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 98 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154 Query: 61 ANGKYSAEN 69 G +A Sbjct: 155 -KGAEAANV 162 >gi|160914513|ref|ZP_02076728.1| hypothetical protein EUBDOL_00519 [Eubacterium dolichum DSM 3991] gi|158433671|gb|EDP11960.1| hypothetical protein EUBDOL_00519 [Eubacterium dolichum DSM 3991] Length = 65 Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K +N +KGYGFIT E G D+F H S + G + V ++ V+ + G Sbjct: 2 QGKVKMFNQEKGYGFITRE----GGKDIFFHYSQLVMEGYKTIDPEASVEFELVETE-RG 56 Query: 64 KYSAENLKL 72 + ++L Sbjct: 57 PQAQHIVRL 65 >gi|156415990|ref|NP_057066.2| Y-box-binding protein 2 [Homo sapiens] gi|116242847|sp|Q9Y2T7|YBOX2_HUMAN RecName: Full=Y-box-binding protein 2; AltName: Full=Contrin; AltName: Full=DNA-binding protein C; Short=Dbpc; AltName: Full=Germ cell-specific Y-box-binding protein; AltName: Full=MSY2 homolog gi|21707292|gb|AAH33800.1| Y box binding protein 2 [Homo sapiens] Length = 364 Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 96 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152 Query: 61 ANGKYSAENLK 71 A N+ Sbjct: 153 KG--AEATNVT 161 >gi|4837737|gb|AAD30662.1| germ cell specific Y-box binding protein [Homo sapiens] gi|28838612|gb|AAH47760.1| Y box binding protein 2 [Homo sapiens] gi|119610629|gb|EAW90223.1| Y box binding protein 2, isoform CRA_a [Homo sapiens] gi|119610630|gb|EAW90224.1| Y box binding protein 2, isoform CRA_a [Homo sapiens] Length = 364 Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 96 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152 Query: 61 ANGKYSAENLK 71 A N+ Sbjct: 153 KG--AEATNVT 161 >gi|15828153|ref|NP_302416.1| cold shock protein [Mycobacterium leprae TN] gi|221230630|ref|YP_002504046.1| putative cold shock protein [Mycobacterium leprae Br4923] gi|2440094|emb|CAB16651.1| small cold-shock protein [Mycobacterium leprae] gi|13093707|emb|CAC31102.1| probable cold shock protein [Mycobacterium leprae] gi|219933737|emb|CAR72244.1| probable cold shock protein [Mycobacterium leprae Br4923] Length = 136 Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V + + Sbjct: 1 MPTGKVKWYDADKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGVA-SGR 54 Query: 62 NGKYSAENLKLVPK 75 G A +LKL+ Sbjct: 55 RGPQ-ALSLKLIDP 67 >gi|308805262|ref|XP_003079943.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri] gi|116058400|emb|CAL53589.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri] Length = 125 Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 10/77 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT------EGQLVTYD 55 RG +KW+N KG+G+ITP+ + DVF+H+SA+ G +G V +D Sbjct: 10 RRRGKVKWFNCTKGFGYITPD---DGEPDVFVHQSALKMEGFRRTDGRRFATQGDSVEFD 66 Query: 56 YV-QNDANGKYSAENLK 71 ++ + + A + Sbjct: 67 VEHESPTDERLKAVCVT 83 >gi|313221374|emb|CBY32128.1| unnamed protein product [Oikopleura dioica] gi|313241319|emb|CBY33595.1| unnamed protein product [Oikopleura dioica] Length = 270 Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-----LTEGQLVTYDYVQ 58 G++KW+N +G+GFI + G DVFLH+S V +G + L G+ V +D Q Sbjct: 86 TGTVKWFNISRGFGFIER---NDGGADVFLHQSGVVGSGRRHRFSLFLKGGEEVEFDVAQ 142 Query: 59 NDANGKYSAE 68 + A Sbjct: 143 GAKGPEAVAV 152 >gi|313236956|emb|CBY12203.1| unnamed protein product [Oikopleura dioica] Length = 270 Score = 76.9 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-----LTEGQLVTYDYVQN 59 G++KW+N +G+GFI + G DVFLH+S V +G + L G+ V +D Q Sbjct: 87 GTVKWFNISRGFGFIER---NDGGADVFLHQSGVVGSGRRHRFSLFLKGGEEVEFDVAQG 143 Query: 60 DANGKYSAE 68 + A Sbjct: 144 AKGPEAVAV 152 >gi|147904000|ref|NP_001091595.1| Y-box-binding protein 2 [Bos taurus] gi|146186879|gb|AAI40615.1| YBX2 protein [Bos taurus] gi|296476769|gb|DAA18884.1| Y box binding protein 2 [Bos taurus] Length = 360 Score = 76.9 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 98 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 154 Query: 61 ANGKYSAEN 69 G +A Sbjct: 155 -KGAEAANV 162 >gi|288959293|ref|YP_003449634.1| cold shock protein [Azospirillum sp. B510] gi|288911601|dbj|BAI73090.1| cold shock protein [Azospirillum sp. B510] Length = 245 Score = 76.9 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW+N KGYGF P+ + G DVF+ A+ SAGL L +GQ V Q + Sbjct: 182 GTVKWFNGGKGYGFAQPD---DGGRDVFIPARALESAGLRGLDDGQRVRMTVRQTEKG-- 236 Query: 65 YSAENLKL 72 A +LK+ Sbjct: 237 MEAVSLKV 244 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 ++KW+NP++GYGF+ +SG D L S V AG L +G V D V+ D G Sbjct: 21 TATVKWFNPERGYGFV---KVGDSGKDALLPASIVVPAGHTTLPDGATVVVDIVE-DRKG 76 Query: 64 KY 65 + Sbjct: 77 QQ 78 >gi|109113073|ref|XP_001107460.1| PREDICTED: y-box-binding protein 2-like [Macaca mulatta] Length = 359 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 97 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153 Query: 61 ANGKYSAEN 69 G +A Sbjct: 154 -KGAEAANV 161 >gi|284038260|ref|YP_003388190.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74] gi|283817553|gb|ADB39391.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74] Length = 198 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI + S GDD+F+H SA+ + + E V + ++ Sbjct: 136 LQTGTVKFFNETKGFGFIKSDSS---GDDIFVHVSAL----IDQIHENDKVRFSI-EHGR 187 Query: 62 NGKYSAENLKLV 73 G +A N+KL+ Sbjct: 188 KG-LNAVNIKLL 198 >gi|183984628|ref|YP_001852919.1| cold shock-like protein B CspB [Mycobacterium marinum M] gi|183177954|gb|ACC43064.1| cold shock-like protein B CspB [Mycobacterium marinum M] Length = 134 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V + + Sbjct: 1 MPTGKVKWYDSDKGFGFLSQE----EGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 54 Query: 62 NGKYSAENLKLVPK 75 G A +LKL+ Sbjct: 55 RGPQ-ALSLKLLDP 67 >gi|158423560|ref|YP_001524852.1| DNA-binding cold-shock protein [Azorhizobium caulinodans ORS 571] gi|158330449|dbj|BAF87934.1| DNA-binding cold-shock protein [Azorhizobium caulinodans ORS 571] Length = 192 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ KGYGFI P+ + G DV +H + + G EG + + V+ + G Sbjct: 31 GAVKWFDAAKGYGFIVPD---DGGPDVLVHVTCLRRDGFTTAMEGARIVCEAVRR-SKGL 86 Query: 65 YSAENLKL 72 + L L Sbjct: 87 QAFRVLSL 94 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--ND 60 R ++KW+N +G+GF++ E D+F+H + GL L GQ V V+ + Sbjct: 120 ERATVKWFNRMRGFGFLS---KGEGTPDIFVHMETLRQQGLTELRPGQSV---LVRYGDG 173 Query: 61 ANGKYSAEN 69 G + E Sbjct: 174 PKGLMATEV 182 >gi|3821921|gb|AAC69702.1| major cold shock protein [Lactobacillus acidophilus] Length = 50 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 5/55 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 KG+GFIT E G DVF+H SA+ G +L EGQ V+YD Q+D G +A Sbjct: 1 KGFGFIT----GEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSD-RGPQAAN 50 >gi|117956377|ref|NP_058571.2| Y-box-binding protein 2 [Mus musculus] gi|56800107|emb|CAI35155.1| Y box protein 2 [Mus musculus] gi|187954905|gb|AAI41113.1| Y box protein 2 [Mus musculus] Length = 359 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 97 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153 Query: 61 ANGKYSAEN 69 G +A Sbjct: 154 -KGAEAANV 161 >gi|532211|gb|AAC34193.1| Y-box binding protein [Mus musculus] Length = 274 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 71 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 127 Query: 61 ANGKYSAEN 69 G +A Sbjct: 128 -KGAEAANV 135 >gi|62656341|ref|XP_220618.3| PREDICTED: Y box protein 2 [Rattus norvegicus] gi|109491139|ref|XP_001079683.1| PREDICTED: Y box binding protein 2 [Rattus norvegicus] Length = 359 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 97 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 153 Query: 61 ANGKYSAEN 69 G +A Sbjct: 154 -KGAEAANV 161 >gi|281344168|gb|EFB19752.1| hypothetical protein PANDA_021601 [Ailuropoda melanoleuca] Length = 310 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 RGS+KW+N GYGFI+ + E DVF+H+ A+ ++ +G+ V +D VQ Sbjct: 37 RGSVKWFNVKNGYGFISRHDTQE---DVFVHQRAITRNNPHKYQRSVGDGETVEFDVVQG 93 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 94 E-RGTEAANV 102 >gi|255078512|ref|XP_002502836.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299] gi|226518102|gb|ACO64094.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299] Length = 305 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++G + W+N KG+GF+T + + DVF+H+S + + G +L + + V ++ + + Sbjct: 44 YKGVVNWFNVAKGFGFVTRD---DGVGDVFVHQSDIYAEGFRSLRDQEPVEFEL-EPMGD 99 Query: 63 GKYSAENLK 71 G+Y A + Sbjct: 100 GRYKAVKVT 108 >gi|296271245|ref|YP_003653877.1| cold-shock DNA-binding domain-containing protein [Thermobispora bispora DSM 43833] gi|296094032|gb|ADG89984.1| cold-shock DNA-binding domain protein [Thermobispora bispora DSM 43833] Length = 131 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF+T + G +VF+H S+V G+ L GQ V + ++ Sbjct: 1 MPSGKVKWYDAEKGFGFLTRD----DGGEVFVH-SSVLPKGVTALKPGQKVEFGIAESRR 55 Query: 62 NGKYSAENLKLVPKSS 77 A +++++ + Sbjct: 56 G--QQALSVRIIEPPT 69 >gi|328860156|gb|EGG09263.1| hypothetical protein MELLADRAFT_104398 [Melampsora larici-populina 98AG31] Length = 334 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASA-GLFNLTEGQLVTYDYVQN 59 +G K++N KG+GFI + E G +VF+H +++ G +L EG+ V Y V Sbjct: 29 RRKGVCKFFNSQKGFGFINDDHPDELGNQEVFVHYTSIGGKGGFRSLAEGEEVEY-VVSP 87 Query: 60 DANGKYSAEN 69 G + E Sbjct: 88 GHKGFQATEV 97 >gi|296138557|ref|YP_003645800.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola DSM 20162] gi|296026691|gb|ADG77461.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola DSM 20162] Length = 139 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF++ E G+DV++ SA+ +G L +GQ V + Sbjct: 1 MPTGKVKWYDAEKGFGFLSQE----GGEDVYVRSSAL-PSGTDELKQGQRVEFSMAAGRR 55 Query: 62 NGKYSAENLKLVPKS 76 A + ++ + Sbjct: 56 G--PQALTVTVLEPA 68 >gi|119870591|ref|YP_940543.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. KMS] gi|126437423|ref|YP_001073114.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. JLS] gi|119696680|gb|ABL93753.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS] gi|126237223|gb|ABO00624.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS] Length = 136 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V + Sbjct: 1 MPTGRVKWYDAEKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGVA-AGR 54 Query: 62 NGKYS 66 G + Sbjct: 55 RGPQA 59 >gi|54026194|ref|YP_120436.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54017702|dbj|BAD59072.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 68 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ W++ KG+GFI +G G DVF+ + G +L EGQ V +D Q+ Sbjct: 1 MVQGTVLWFDSKKGFGFIAQDG---GGADVFVDYLELVGGGFRSLHEGQRVRFDLRQS-K 56 Query: 62 NGKYS 66 +G + Sbjct: 57 SGPEA 61 >gi|332668957|ref|YP_004451965.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi ATCC 484] gi|332337995|gb|AEE44578.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484] Length = 312 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60 + +G+++W++ ++G+GF++ + +D+F+H S + G L EGQ V ++ + D Sbjct: 1 MPQGTVRWFDAERGFGFLS---LGDEAEDLFVHASEIVGDDGPRVLREGQEVEFEVGEGD 57 Query: 61 ANGKYSAENLKLV 73 A +++V Sbjct: 58 RG--PVARRVRVV 68 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 6/73 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ WY+PDKG+GF++P+ + G+D+F+H ++ L L EG VTYD D Sbjct: 157 GTVTWYDPDKGFGFVSPD---DGGEDLFVHARSLVGD-LSELVEGDRVTYDVAAGDRG-- 210 Query: 65 YSAENLKLVPKSS 77 A +++L S+ Sbjct: 211 PQARDVRLAGGST 223 Score = 67.7 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ WY P KGYGF+ P+G G ++F+H SA+ G+ EGQ V + V + + Sbjct: 81 GTVSWYEPTKGYGFVGPDG---GGPEIFVHSSAIVGGGVIT--EGQRVAFLVVPGEKGPQ 135 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 7/69 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G + ++PD+G+GFITP+ G D+F+H S V + L EG V + Q+D Sbjct: 251 GVVARFDPDRGFGFITPDA---GGPDLFVHVSVVRNG--EVLEEGDRVRFKVRQSDRG-- 303 Query: 65 YSAENLKLV 73 A+ ++L+ Sbjct: 304 PQADRVELL 312 >gi|23336360|ref|ZP_00121581.1| COG1278: Cold shock proteins [Bifidobacterium longum DJO10A] gi|23464635|ref|NP_695238.1| cold shock protein [Bifidobacterium longum NCC2705] gi|189438870|ref|YP_001953951.1| cold shock protein [Bifidobacterium longum DJO10A] gi|227546733|ref|ZP_03976782.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620709|ref|ZP_04663740.1| cold shock protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454603|ref|YP_003661746.1| putative cold-shock DNA-binding domain-containing protein [Bifidobacterium longum subsp. longum JDM301] gi|317481709|ref|ZP_07940741.1| cold-shock' DNA-binding domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689671|ref|YP_004209405.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F] gi|322691632|ref|YP_004221202.1| cold shock protein [Bifidobacterium longum subsp. longum JCM 1217] gi|23325192|gb|AAN23874.1| cold shock protein [Bifidobacterium longum NCC2705] gi|32700058|gb|AAP86682.1| cold shock protein B [Bifidobacterium longum subsp. infantis] gi|189427305|gb|ACD97453.1| Cold shock protein [Bifidobacterium longum DJO10A] gi|227212695|gb|EEI80576.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516285|gb|EEQ56152.1| cold shock protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516230|emb|CBK69846.1| cold-shock DNA-binding protein family [Bifidobacterium longum subsp. longum F8] gi|296184034|gb|ADH00916.1| putative cold-shock DNA-binding domain protein [Bifidobacterium longum subsp. longum JDM301] gi|316916823|gb|EFV38213.1| cold-shock' DNA-binding domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456488|dbj|BAJ67110.1| cold shock protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320461007|dbj|BAJ71627.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F] Length = 129 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++W++ KGYGFIT +E G DVFL A+ G+ L +G V Y V + Sbjct: 1 MPTGRVRWFDAAKGYGFIT----SEEGKDVFLPAQAL-PTGVTTLRKGAKVEYSVV-DGR 54 Query: 62 NGKYSAENLKLVPKS 76 G A +++L+ + Sbjct: 55 RGPQ-AMDVRLIASA 68 >gi|111226076|ref|YP_716870.1| CspB [Frankia alni ACN14a] gi|111153608|emb|CAJ65366.1| CspB [Frankia alni ACN14a] Length = 131 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ DKG+GF++ + G DVF+H++A+ AG+ L G V + Sbjct: 1 MPTGKVKWFDVDKGFGFLSRD----DGGDVFVHKAAL-PAGVERLKPGDRVEFGVAAGRR 55 Query: 62 NGKYSAENLKLVPKS 76 + + L P S Sbjct: 56 GDQALSVRLLAAPPS 70 >gi|152967523|ref|YP_001363307.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] gi|151362040|gb|ABS05043.1| putative cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] Length = 152 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KW++ DKG+GF+ E G +VF+H SA+ AG L++G V + VQ Sbjct: 24 VPTGKVKWFDADKGFGFLA----AEDGAEVFVHASAL-PAGTTTLSKGSRVEFGVVQG-- 76 Query: 62 NGKYSAENLKLVPK 75 A +++L+ Sbjct: 77 KNGTQALSVRLLDP 90 >gi|17298531|gb|AAL38166.1| putative cold shock protein [Bradyrhizobium japonicum] Length = 56 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 G+GFITP+ + DVF+H A+ + G +L EGQ V++ ++ A G +A Sbjct: 3 GFGFITPD---DGSKDVFVHFXAIQNDGYKSLDEGQKVSFTI-ESGAKGPAAANV 53 >gi|118616153|ref|YP_904485.1| cold shock-like protein B CspB [Mycobacterium ulcerans Agy99] gi|118568263|gb|ABL03014.1| cold shock-like protein B CspB [Mycobacterium ulcerans Agy99] Length = 184 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V + + Sbjct: 51 VPTGKVKWYDSDKGFGFLSQE----EGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 104 Query: 62 NGKYSAENLKLVPK 75 G A +LKL+ Sbjct: 105 RGPQ-ALSLKLLDP 117 >gi|254520602|ref|ZP_05132658.1| cold shock protein [Clostridium sp. 7_2_43FAA] gi|226914351|gb|EEH99552.1| cold shock protein [Clostridium sp. 7_2_43FAA] Length = 69 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 7/72 (9%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDA 61 + G++KWY+ +KGYGFI S G+DVF+H S + G +L EG+ +T+D +N+ Sbjct: 4 YTGTVKWYSMEKGYGFI----SCNEGNDVFVHHSQIKEKGPEKDLHEGENITFDIQENEK 59 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 60 G--PMAVNVQKL 69 >gi|148235020|ref|NP_001091543.1| DNA-binding protein A [Bos taurus] gi|146186540|gb|AAI40645.1| CSDA protein [Bos taurus] gi|296487252|gb|DAA29365.1| cold shock domain protein A [Bos taurus] Length = 376 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 99 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 155 Query: 61 ANGKYSAEN 69 G +A Sbjct: 156 -KGAEAANV 163 >gi|291390788|ref|XP_002711897.1| PREDICTED: cold shock domain protein A short-like [Oryctolagus cuniculus] Length = 784 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N KGYGFI S E DVF+H +A+ L ++ +G+ V D V+ Sbjct: 572 GTVKWFNVKKGYGFIHRHDSKE---DVFVHHTAITKNNPRKYLHSVGDGETVELDVVEG- 627 Query: 61 ANGKYSAEN 69 G +A Sbjct: 628 VKGAEAANV 636 >gi|22126652|ref|NP_670075.1| cold shock-like protein [Yersinia pestis KIM 10] gi|45441022|ref|NP_992561.1| cold shock-like protein [Yersinia pestis biovar Microtus str. 91001] gi|149366655|ref|ZP_01888689.1| cold shock-like protein [Yersinia pestis CA88-4125] gi|21959665|gb|AAM86326.1|AE013880_6 cold shock protein [Yersinia pestis KIM 10] gi|45435881|gb|AAS61438.1| cold shock protein [Yersinia pestis biovar Microtus str. 91001] gi|149291029|gb|EDM41104.1| cold shock-like protein [Yersinia pestis CA88-4125] Length = 77 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +GYGFI+P + G DV+++++A+A+ +L EGQ V + ++ Sbjct: 11 LKMGRVKWFNQSEGYGFISPH---DGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRS-I 66 Query: 62 NGKYSAENL 70 +G +A+ + Sbjct: 67 HGPSAADVI 75 >gi|6166111|sp|Q62764|DBPA_RAT RecName: Full=DNA-binding protein A; AltName: Full=Cold shock domain-containing protein A; AltName: Full=Muscle Y-box protein YB2; AltName: Full=RYB-A; AltName: Full=Y-box-binding protein A gi|1101884|gb|AAB60520.1| YB2 [Rattus norvegicus] gi|1589174|prf||2210343A nicotinic acetylcholine receptor repressor Length = 361 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 Query: 61 ANGKYSAEN 69 G +A Sbjct: 142 -KGAEAANV 149 >gi|226474410|emb|CAX71691.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 203 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|225013100|ref|ZP_03703514.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-2A] gi|225002758|gb|EEG40740.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-2A] Length = 63 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT + ESG+DVF+H SA+ L EG V Y ++ G Sbjct: 2 TGTVKFFNEAKGFGFITND---ESGEDVFVHISALNGV---TLREGAKVEY-VEEDGKKG 54 Query: 64 KYS 66 K + Sbjct: 55 KQA 57 >gi|152998000|ref|YP_001342835.1| cold-shock DNA-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150838924|gb|ABR72900.1| putative cold-shock DNA-binding domain protein [Marinomonas sp. MWYL1] Length = 85 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N KG GFI E + DVF+H ++ G +L +GQLV++ D Sbjct: 5 TGKVKWFNDAKGVGFIKREEDS----DVFVHYKSIVCDGHKSLRKGQLVSFVLSTTDFG- 59 Query: 64 KYSAENLKLVPKSS 77 A +++L ++ Sbjct: 60 -LQAMDVRLEKEAQ 72 >gi|109095654|ref|XP_001118505.1| PREDICTED: DNA-binding protein A-like [Macaca mulatta] Length = 407 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 128 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 184 Query: 61 ANGKYSAEN 69 G +A Sbjct: 185 -KGAEAANV 192 >gi|295704910|ref|YP_003597985.1| cold shock protein [Bacillus megaterium DSM 319] gi|294802569|gb|ADF39635.1| cold shock protein [Bacillus megaterium DSM 319] Length = 72 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 GFI E GDDVF+H S++ S G +L EGQ VT+D Q G +A K+ Sbjct: 21 GFIE----IEGGDDVFVHFSSIQSEGFKSLDEGQKVTFDIEQGQ-RGAQAANVHKV 71 >gi|328850349|gb|EGF99515.1| hypothetical protein MELLADRAFT_94308 [Melampsora larici-populina 98AG31] Length = 432 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 11/76 (14%) Query: 5 GSIKWYNPDKGYGFITPEGST-------ESGDDVFLHRSAVAS--AGLFNLTEGQLVTYD 55 G K++N KG+GFI + + G D+F+H S + AG +L +G+ V Y Sbjct: 99 GFCKFFNAGKGFGFIQDDNPAELPTMDGDPGTDIFVHYSCITRCDAGFKSLLDGEKVEY- 157 Query: 56 YVQNDANGKYSAENLK 71 V +N +A ++ Sbjct: 158 -VLGRSNKGLAALDIT 172 >gi|300173064|ref|YP_003772230.1| cold shock protein [Leuconostoc gasicomitatum LMG 18811] gi|299887443|emb|CBL91411.1| Cold shock protein [Leuconostoc gasicomitatum LMG 18811] Length = 74 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K + ++GYG+ITP+ + G+DVF+H + + G +L +G+ V Y VQ Sbjct: 1 MKTGIVKIWQKERGYGYITPD---DGGEDVFVHFNGIDMIGFKSLIQGEKVNYVLVQGFK 57 Query: 62 NGKYSAENLKLVPKSS 77 N Y A + + K + Sbjct: 58 N--YQAAQVSPIMKKA 71 >gi|194332739|ref|NP_001123667.1| Y box binding protein 2 [Xenopus (Silurana) tropicalis] gi|187469386|gb|AAI66950.1| LOC100170415 protein [Xenopus (Silurana) tropicalis] Length = 337 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 43 QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 99 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 100 E-KGAEAANV 108 >gi|262089577|gb|ACY24676.1| hypothetical protein [uncultured organism] Length = 192 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K +N ++G+GFI + + G D+F+H SA A G EG+ +T++ + D NGK Sbjct: 8 GKLKKWNAERGFGFIVAD---DGGQDIFVHISAFARDG-RQPAEGEALTFEI-EPDRNGK 62 Query: 65 YSAENLKLV 73 SA ++ V Sbjct: 63 RSAVRVRRV 71 >gi|126340161|ref|XP_001372013.1| PREDICTED: similar to YB2 [Monodelphis domestica] Length = 320 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D V+ + Sbjct: 46 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 102 Query: 61 ANGKYSAEN 69 G +A Sbjct: 103 -KGAEAANV 110 >gi|41406908|ref|NP_959744.1| CspB [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395258|gb|AAS03127.1| CspB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 138 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ DKG+GF++ E G+DV++ SA+ AG+ L GQ V + + Sbjct: 4 VPTGKVKWYDADKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGIA-SGR 57 Query: 62 NGKYSAENLKLVPK 75 G A +LKL+ Sbjct: 58 RGPQ-ALSLKLIEP 70 >gi|307610887|emb|CBX00504.1| cold shock-like protein cspE [Legionella pneumophila 130b] Length = 56 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 RG +KW+N KG+GFI +G D F+H SA+ G NL +G V + Q Sbjct: 6 RGKVKWFNKAKGFGFIE-----SNGKDYFVHFSAIQGNGFKNLPDGARVLFKVGQG 56 >gi|51105064|gb|AAT97092.1| Y-box factor-like protein [Lymnaea stagnalis] Length = 219 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI + + E DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 33 TGTVKWFNVKSGYGFINRDDTKE---DVFVHQTAIIKNNPRKYLRSVGDGEKVEFDVVEG 89 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 90 E-KGNEAANV 98 >gi|194217599|ref|XP_001918171.1| PREDICTED: similar to LOC614429 protein [Equus caballus] Length = 291 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 43 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 99 Query: 61 ANGKYSAEN 69 G +A Sbjct: 100 -KGAEAANV 107 >gi|148688939|gb|EDL20886.1| cold shock domain protein A, isoform CRA_b [Mus musculus] Length = 292 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 Query: 61 ANGKYSAEN 69 G +A Sbjct: 142 -KGAEAANV 149 >gi|3821915|gb|AAC69699.1| major cold shock protein [Lactococcus lactis subsp. cremoris] gi|3821919|gb|AAC69701.1| major cold shock protein [Lactococcus lactis subsp. cremoris] Length = 50 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 KG+GFIT +E G D+F H SA+ S G L EGQ V +D V+ G +A Sbjct: 1 KGFGFIT----SEEGKDLFAHFSAIQSDGFKTLDEGQKVEFD-VEEGQRGPQAAN 50 >gi|51595763|ref|YP_069954.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953] gi|108806689|ref|YP_650605.1| cold shock-like protein [Yersinia pestis Antiqua] gi|108812740|ref|YP_648507.1| cold shock-like protein [Yersinia pestis Nepal516] gi|145599569|ref|YP_001163645.1| cold shock-like protein [Yersinia pestis Pestoides F] gi|153948246|ref|YP_001401539.1| cold shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|162421137|ref|YP_001606435.1| cold shock DNA-binding domain-containing protein [Yersinia pestis Angola] gi|165924490|ref|ZP_02220322.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938972|ref|ZP_02227525.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009860|ref|ZP_02230758.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211781|ref|ZP_02237816.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399726|ref|ZP_02305244.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419851|ref|ZP_02311604.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424222|ref|ZP_02315975.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469384|ref|ZP_02334088.1| cold shock protein [Yersinia pestis FV-1] gi|170024887|ref|YP_001721392.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|186894842|ref|YP_001871954.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|218928546|ref|YP_002346421.1| cold shock-like protein [Yersinia pestis CO92] gi|229841368|ref|ZP_04461527.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843473|ref|ZP_04463619.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229895846|ref|ZP_04511016.1| Cold shock-like protein [Yersinia pestis Pestoides A] gi|229903148|ref|ZP_04518261.1| Cold shock-like protein [Yersinia pestis Nepal516] gi|270486942|ref|ZP_06204016.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|51589045|emb|CAH20663.1| cold shock-like protein [Yersinia pseudotuberculosis IP 32953] gi|108776388|gb|ABG18907.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108778602|gb|ABG12660.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] gi|115347157|emb|CAL20050.1| cold shock-like protein [Yersinia pestis CO92] gi|145211265|gb|ABP40672.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|152959741|gb|ABS47202.1| cold shock DNA-binding domain protein [Yersinia pseudotuberculosis IP 31758] gi|162353952|gb|ABX87900.1| cold shock DNA-binding domain protein [Yersinia pestis Angola] gi|165913119|gb|EDR31743.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923550|gb|EDR40682.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165991256|gb|EDR43557.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207552|gb|EDR52032.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962592|gb|EDR58613.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050434|gb|EDR61842.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057071|gb|EDR66834.1| cold shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751421|gb|ACA68939.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186697868|gb|ACC88497.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] gi|229678918|gb|EEO75021.1| Cold shock-like protein [Yersinia pestis Nepal516] gi|229689820|gb|EEO81881.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697734|gb|EEO87781.1| Cold shock-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700769|gb|EEO88798.1| Cold shock-like protein [Yersinia pestis Pestoides A] gi|270335446|gb|EFA46223.1| transcriptional repressor activity CueR [Yersinia pestis KIM D27] gi|320015742|gb|ADV99313.1| Cold shock-like protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 69 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +GYGFI+P + G DV+++++A+A+ +L EGQ V + ++ Sbjct: 3 LKMGRVKWFNQSEGYGFISPH---DGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRS-I 58 Query: 62 NGKYSAENL 70 +G +A+ + Sbjct: 59 HGPSAADVI 67 >gi|326912755|ref|XP_003202712.1| PREDICTED: nuclease-sensitive element-binding protein 1-like [Meleagris gallopavo] Length = 253 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 45 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 101 Query: 61 ANGKYSAEN 69 G +A Sbjct: 102 -KGAEAANV 109 >gi|291457446|ref|ZP_06596836.1| conserved domain protein [Bifidobacterium breve DSM 20213] gi|51094320|gb|AAT95330.1| CspA [Bifidobacterium breve UCC2003] gi|159024131|gb|ABW87310.1| cold shock protein [Bifidobacterium breve] gi|291381281|gb|EFE88799.1| conserved domain protein [Bifidobacterium breve DSM 20213] Length = 79 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57 + +G++K++ KG+GFI P+ + G+DVF+H + + G L EG V Y Sbjct: 1 MAQGTVKFFLAKKGFGFIQPD---DGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPA 57 Query: 58 QNDANGKYSAENLKLVPKSS 77 + G + E +KL + Sbjct: 58 PSG-KGTQAKEVVKLSSGEA 76 >gi|325918449|ref|ZP_08180573.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] gi|325535344|gb|EGD07216.1| cold-shock DNA-binding protein family [Xanthomonas vesicatoria ATCC 35937] Length = 57 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%) Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 N KG+GFI+ E +G+DVF+H A+ G +L EGQ V++ VQ A+ + Sbjct: 1 NDAKGFGFISRE----NGEDVFVHFRAIQIQGFKSLKEGQKVSFTVVQGQKG--LQADAV 54 Query: 71 KLV 73 ++V Sbjct: 55 QVV 57 >gi|288922018|ref|ZP_06416226.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] gi|288346634|gb|EFC80955.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] Length = 131 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ D+G+GF++ + GDDVF+H++A+ AG+ L G V + Sbjct: 1 MPTGKVKWFDVDRGFGFLSRD----DGDDVFVHKAAL-PAGVDRLKPGDRVEFGVAAGRR 55 Query: 62 NGKYSAENLKLVPKS 76 + + + P S Sbjct: 56 GDQALSVRILAAPPS 70 >gi|20806532|ref|NP_035863.1| DNA-binding protein A short isoform [Mus musculus] gi|10185725|gb|AAG14419.1|AF248547_1 Y-box protein 3 short isoform [Mus musculus] gi|38382730|gb|AAH62377.1| Cold shock domain protein A [Mus musculus] Length = 292 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 85 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141 Query: 61 ANGKYSAEN 69 G +A Sbjct: 142 -KGAEAANV 149 >gi|86743101|ref|YP_483501.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3] gi|86569963|gb|ABD13772.1| cold-shock DNA-binding protein family [Frankia sp. CcI3] Length = 131 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ DKG+GF++ + G DVF+H++A+ AG+ L G V + Sbjct: 1 MPTGKVKWFDVDKGFGFLSRD----DGGDVFVHKAAL-PAGVDRLKPGDRVEFGVAAGRR 55 Query: 62 NGKYSAENLKLVPKS 76 + + L P S Sbjct: 56 GDQALSVRLLTAPPS 70 >gi|268590149|ref|ZP_06124370.1| cold-shock DNA-binding domain protein [Providencia rettgeri DSM 1131] gi|291314424|gb|EFE54877.1| cold-shock DNA-binding domain protein [Providencia rettgeri DSM 1131] Length = 71 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H G +KW++ +GYGFI+P GDDVF+ ++A+ + +L EGQ V + +N + Sbjct: 5 LHMGRVKWFDAKEGYGFISP---FNGGDDVFVTTKSIANKKIKSLFEGQNVEFSVTRN-S 60 Query: 62 NGKYSAENL 70 +G +A+ + Sbjct: 61 DGITAADVI 69 >gi|158934472|emb|CAL64870.1| putative RlYB2 protein [Rana lessonae] Length = 327 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 37 QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 93 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 94 E-KGAEAANV 102 >gi|332849851|ref|XP_001142318.2| PREDICTED: y-box-binding protein 2-like [Pan troglodytes] Length = 333 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L + +G+ V +D V+ + Sbjct: 65 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQAAIKRNNPRKFLRTVGDGETVEFDVVEGE 121 Query: 61 ANGKYSAENLK 71 A N+ Sbjct: 122 KG--AEATNVT 130 >gi|4071323|gb|AAC98674.1| Y-box protein MSY2 isoform a [Mus musculus] Length = 282 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 20 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 76 Query: 61 ANGKYSAENLK 71 + A N+ Sbjct: 77 KGAR--AANVT 85 >gi|255586301|ref|XP_002533802.1| cellular nucleic acid binding protein, putative [Ricinus communis] gi|223526275|gb|EEF28589.1| cellular nucleic acid binding protein, putative [Ricinus communis] Length = 266 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62 RG + ++ KG+GFI P+ + G+D+F+H SA+ S G +L E +V + +D N Sbjct: 15 RGKVVRFSDRKGFGFIKPD---DGGEDLFVHHSAIKSDGRYRSLAEDDVVEFTVSLSDDN 71 Query: 63 GKYSAENLK 71 KY A ++ Sbjct: 72 -KYQAVDVT 79 >gi|324997476|ref|ZP_08118588.1| cold-shock DNA-binding protein family [Pseudonocardia sp. P1] Length = 128 Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF++ + G+DV++ ++A+ +G L GQ V + + Sbjct: 1 MPTGRVKWYDAEKGFGFLSQD----GGEDVYVRKAAL-PSGTEALKSGQRVEFGMAEGRR 55 Query: 62 NGKYSAENLKLVPKSSN 78 A ++++V K ++ Sbjct: 56 G--PQALSVRVVEKQAS 70 >gi|110834773|ref|YP_693632.1| cold-shock domain-contain protein [Alcanivorax borkumensis SK2] gi|110647884|emb|CAL17360.1| cold-shock domain family protein [Alcanivorax borkumensis SK2] Length = 76 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 6/68 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 RG +KW+NP+KG+GFI T+SG+++F+H AV + G +L G V +D +D Sbjct: 11 QRGEVKWFNPNKGFGFI----LTDSGEELFVHFKAVQNGGRRSLRTGTKVRFDTRMSDRG 66 Query: 63 GKYSAENL 70 A+N+ Sbjct: 67 --EQADNV 72 >gi|148822079|ref|YP_001286833.1| cold shock protein B cspB [Mycobacterium tuberculosis F11] gi|253800107|ref|YP_003033108.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 1435] gi|254231179|ref|ZP_04924506.1| cold shock-like protein B cspB [Mycobacterium tuberculosis C] gi|289555348|ref|ZP_06444558.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 605] gi|289744597|ref|ZP_06503975.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987] gi|298524364|ref|ZP_07011773.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308397434|ref|ZP_07492504.2| putative cold-shock DNA-binding domain protein [Mycobacterium tuberculosis SUMu012] gi|124600238|gb|EAY59248.1| cold shock-like protein B cspB [Mycobacterium tuberculosis C] gi|148720606|gb|ABR05231.1| cold shock protein B cspB [Mycobacterium tuberculosis F11] gi|253321610|gb|ACT26213.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 1435] gi|289439980|gb|EFD22473.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 605] gi|289685125|gb|EFD52613.1| cold shock protein B cspB [Mycobacterium tuberculosis 02_1987] gi|298494158|gb|EFI29452.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308366919|gb|EFP55770.1| putative cold-shock DNA-binding domain protein [Mycobacterium tuberculosis SUMu012] gi|323720694|gb|EGB29771.1| cold shock protein B cspB [Mycobacterium tuberculosis CDC1551A] gi|328459845|gb|AEB05268.1| cold shock protein B cspB [Mycobacterium tuberculosis KZN 4207] Length = 138 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+PDKG+GF++ E G+DV++ SA+ G+ L GQ V + + Sbjct: 4 VPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALKAGQRVEFGIA-SGR 57 Query: 62 NGKYSAENLKLVPK 75 G A +L+L+ Sbjct: 58 RGPQ-ALSLRLIEP 70 >gi|194211706|ref|XP_001495854.2| PREDICTED: similar to Y-box protein ZONAB-B [Equus caballus] Length = 332 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 55 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 111 Query: 61 ANGKYSAEN 69 G +A Sbjct: 112 -KGAEAANV 119 >gi|311897807|dbj|BAJ30215.1| putative cold shock protein [Kitasatospora setae KM-6054] Length = 127 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGF++ + G +VF+H A+ AG+ L GQ V + Sbjct: 1 MPTGQVKWFNETKGYGFLSRD----DGGEVFVHTKAL-PAGVTTLRPGQRVEFGVAAGHR 55 Query: 62 NGKYSAENLKLV 73 A +++L+ Sbjct: 56 G--DQAMSVQLL 65 >gi|145222299|ref|YP_001132977.1| cold-shock DNA-binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315442733|ref|YP_004075612.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] gi|145214785|gb|ABP44189.1| cold-shock DNA-binding protein family [Mycobacterium gilvum PYR-GCK] gi|315261036|gb|ADT97777.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1] Length = 136 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V + Sbjct: 1 MPTGRVKWYDAEKGFGFLSQE----EGEDVYVRSSAL-PAGVEGLKAGQRVEFGVAAGRR 55 Query: 62 NGKYSAENLKLVPK 75 A +KL+ Sbjct: 56 G--PQALQVKLIDP 67 >gi|256397197|ref|YP_003118761.1| cold-shock DNA-binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256363423|gb|ACU76920.1| cold-shock DNA-binding domain protein [Catenulispora acidiphila DSM 44928] Length = 131 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G IKWY+ +KG+GFIT + G DVF+H SA+ AG L GQ V + Sbjct: 1 MPTGKIKWYDTEKGFGFITRD----DGPDVFMHSSAL-PAGTAELKSGQRVEFGVAAGKR 55 Query: 62 NGKYSAENLKLVP 74 +A +KL+ Sbjct: 56 G--DTAIGVKLLE 66 >gi|226308122|ref|YP_002768082.1| cold shock protein [Rhodococcus erythropolis PR4] gi|226187239|dbj|BAH35343.1| probable cold shock protein [Rhodococcus erythropolis PR4] Length = 137 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF++ E G+DV++ SA+ G+ L GQ V + Sbjct: 1 MPTGKVKWYDVEKGFGFLSQE----EGEDVYVRASAL-PEGVEGLKAGQRVEFGMAAGRR 55 Query: 62 NGKYSAENLKLVPKS 76 A +LK++ + Sbjct: 56 G--PQALSLKVLEPA 68 >gi|254443950|ref|ZP_05057426.1| 'Cold-shock' DNA-binding domain, putative [Verrucomicrobiae bacterium DG1235] gi|198258258|gb|EDY82566.1| 'Cold-shock' DNA-binding domain, putative [Verrucomicrobiae bacterium DG1235] Length = 64 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 7/71 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G+IKW++ +KGYGFI +E GDD+F+H S + G L EG V ++ + Sbjct: 1 MPKGTIKWFDQEKGYGFIQQ---SEGGDDLFVHHS--ETDGYA-LNEGDSVEFEIGEG-R 53 Query: 62 NGKYSAENLKL 72 G + + K+ Sbjct: 54 KGPCATKVQKV 64 >gi|2073109|dbj|BAA19849.1| Y box protein 1 [Carassius auratus] Length = 311 Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 42 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 98 Query: 61 ANGKYSAEN 69 G +A Sbjct: 99 -KGAEAANV 106 >gi|323452553|gb|EGB08427.1| hypothetical protein AURANDRAFT_16921 [Aureococcus anophagefferens] Length = 70 Score = 75.4 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 +N KGYGFITP+ G DVF+H++ + + G +L EG+ V ++ + D NG+ A + Sbjct: 1 FNTVKGYGFITPD---NGGGDVFVHQTQIYARGFRSLAEGENVEFEI-EMDQNGRERAVS 56 Query: 70 LK 71 + Sbjct: 57 VT 58 >gi|167966659|ref|ZP_02548936.1| cold shock protein B cspB [Mycobacterium tuberculosis H37Ra] Length = 75 Score = 75.4 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+PDKG+GF++ E G+DV++ SA+ G+ LT GQ V + + Sbjct: 1 MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSAL-PTGVEALTAGQRVEFGIA-SGR 54 Query: 62 NGKYSAENLKLVPK 75 G + A +L+L+ Sbjct: 55 RGPH-ALSLRLIEP 67 >gi|181484|gb|AAA35749.1| DNA-binding protein A [Homo sapiens] Length = 412 Score = 75.4 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 163 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 219 Query: 61 ANGKYSAEN 69 G +A Sbjct: 220 -KGAEAANV 227 >gi|126662941|ref|ZP_01733939.1| cold shock protein [Flavobacteria bacterium BAL38] gi|126624599|gb|EAZ95289.1| cold shock protein [Flavobacteria bacterium BAL38] Length = 66 Score = 75.4 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 7/71 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KGYGFIT + E+G D+F+H S + +L EG V+Y+ + Sbjct: 1 MRTGKVKFFNESKGYGFITDD---ETGKDIFVHASGMRVE---SLNEGDAVSYE-EEEGR 53 Query: 62 NGKYSAENLKL 72 GK +A+ + + Sbjct: 54 KGKVAAQVVVI 64 >gi|289828079|ref|ZP_06546191.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 45 Score = 75.4 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 3/44 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47 +G++KW+N KG+GFITPE + DVF+H SA+ + G L Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFVHFSAIQTNGFKTLA 45 >gi|281352187|gb|EFB27771.1| hypothetical protein PANDA_013847 [Ailuropoda melanoleuca] Length = 163 Score = 75.4 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 49 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 105 Query: 61 ANGKYSAEN 69 G +A Sbjct: 106 -KGAEAANV 113 >gi|301513705|ref|ZP_07238942.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB058] gi|301598130|ref|ZP_07243138.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB059] Length = 61 Score = 75.4 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 +N KG+GFI T+ G DVF H S + + G L EGQ V + Q A N Sbjct: 1 FNETKGFGFIQ----TDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQGKKG--PQASN 54 Query: 70 LKLV 73 + +V Sbjct: 55 ITIV 58 >gi|14602477|gb|AAH09744.1| CSDA protein [Homo sapiens] Length = 303 Score = 75.4 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L +L +G+ V +D V+ + Sbjct: 93 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSLGDGETVEFDVVEGE 149 Query: 61 ANGKYSAEN 69 G +A Sbjct: 150 -KGAEAANV 157 >gi|169627971|ref|YP_001701620.1| cold shock-like protein B CspB [Mycobacterium abscessus ATCC 19977] gi|169239938|emb|CAM60966.1| Probable cold shock-like protein B CspB [Mycobacterium abscessus] Length = 137 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 9/79 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V + Sbjct: 1 MPTGKVKWYDAEKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQKVEFGMAAGRR 55 Query: 62 NGKYSAENLKLV--PKSSN 78 A +LKL+ P S Sbjct: 56 G--PQALSLKLIDAPPSVQ 72 >gi|291405168|ref|XP_002719041.1| PREDICTED: Y box binding protein 2 [Oryctolagus cuniculus] Length = 275 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 13 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 69 Query: 61 ANGKYSAEN 69 G +A Sbjct: 70 -KGAEAANV 77 >gi|56800108|emb|CAI35156.1| Y box protein 2 [Mus musculus] Length = 282 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 20 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 76 Query: 61 ANGKYSAEN 69 G +A Sbjct: 77 -KGAEAANV 84 >gi|149610695|ref|XP_001517390.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus] Length = 223 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 62 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118 Query: 61 ANGKYSAEN 69 G +A Sbjct: 119 -KGAEAANV 126 >gi|74007889|ref|XP_531701.2| PREDICTED: similar to nuclease sensitive element binding protein 1 [Canis familiaris] Length = 399 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 136 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNHPRKYLRSVGDGETVEFDVVEGE 192 Query: 61 ANGKYSAEN 69 G +A Sbjct: 193 -KGAEAANV 200 >gi|311743491|ref|ZP_07717297.1| cold-shock domain family protein [Aeromicrobium marinum DSM 15272] gi|311312621|gb|EFQ82532.1| cold-shock domain family protein [Aeromicrobium marinum DSM 15272] Length = 131 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KG+GF+ S++ G DV+LH A+ G+ + G V + Q Sbjct: 1 MPTGKVKWFDAGKGFGFL----SSDEGPDVYLHADAL-PEGMDTIKPGTRVEFGIAQGRR 55 Query: 62 NGKYSAENLKLVPKSSN 78 A ++L +++ Sbjct: 56 G--DQALQVRLAEPATS 70 >gi|254282751|ref|ZP_04957719.1| 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR51-B] gi|219678954|gb|EED35303.1| 'Cold-shock' DNA-binding domain protein [gamma proteobacterium NOR51-B] Length = 123 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GSIKW+N KG+GFIT + G++VF+H V + GQ V Y + + Sbjct: 60 KGSIKWFNATKGFGFITGD----DGNEVFVHFRNVEQLSKREIKPGQRVAYRVTETERG- 114 Query: 64 KYSAENLKLV 73 AE++ + Sbjct: 115 -PQAEDVSPL 123 >gi|118575691|ref|YP_875434.1| cold-shock protein [Cenarchaeum symbiosum A] gi|118194212|gb|ABK77130.1| cold-shock protein [Cenarchaeum symbiosum A] Length = 63 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 10/70 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N +G+GFI E G D+F+H++ + L +G V ++ + Sbjct: 1 MEQGTVKWFNRTRGFGFIERET----GADLFVHKTNIDGN----LRDGDKVEFEVGEGPK 52 Query: 62 NGKYSAENLK 71 SA N+K Sbjct: 53 G--PSAVNVK 60 >gi|194131842|gb|ACF33226.1| Y-box protein Lyb1 [Lethenteron japonicum] Length = 331 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D V+ + Sbjct: 27 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVEGE 83 Query: 61 ANGKYSAEN 69 G +A Sbjct: 84 -KGAEAANV 91 >gi|301166258|emb|CBW25833.1| cold shock-like protein [Bacteriovorax marinus SJ] Length = 64 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K+++ +KG+GFITPE G D+F+H + + S L EG V Y+ + Sbjct: 1 METGKVKFFDQEKGFGFITPE---NGGKDIFVHITGIQSG---PLNEGDTVEYEVGEGLK 54 Query: 62 NGKYSAENLK 71 A N+ Sbjct: 55 G--PCAVNVS 62 >gi|311746405|ref|ZP_07720190.1| putative cold shock protein [Algoriphagus sp. PR1] gi|126575291|gb|EAZ79623.1| putative cold shock protein [Algoriphagus sp. PR1] Length = 64 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 9/73 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K++N KG+GFITP+ S E DVF+H+S + + E V+Y+ VQ Sbjct: 1 MNEGTVKFFNTTKGFGFITPDDSDE---DVFVHQSGLVHD----IRENDKVSYELVQGKK 53 Query: 62 NGKYSAENLKLVP 74 +A N+K++ Sbjct: 54 G--VNAVNVKVIK 64 >gi|147901492|ref|NP_001081167.1| Y-box-binding protein 2-B [Xenopus laevis] gi|214642|gb|AAA49924.1| p54 [Xenopus laevis] Length = 324 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI +S +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 43 QGTVKWFNVRNGYGFI---NRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 100 E-KGAEAANV 108 >gi|213691595|ref|YP_002322181.1| putative cold-shock DNA-binding domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|312132324|ref|YP_003999663.1| cspc2 [Bifidobacterium longum subsp. longum BBMN68] gi|213523056|gb|ACJ51803.1| putative cold-shock DNA-binding domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|311773640|gb|ADQ03128.1| CspC2 [Bifidobacterium longum subsp. longum BBMN68] gi|320457683|dbj|BAJ68304.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 129 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++W++ KGYGFIT +E G DVFL A+ G L +G V Y V + Sbjct: 1 MPTGRVRWFDAAKGYGFIT----SEEGKDVFLPAQAL-PTGATTLRKGAKVEYSVV-DGR 54 Query: 62 NGKYSAENLKLVPKS 76 G A +++L+ + Sbjct: 55 RGPQ-AMDVRLIASA 68 >gi|74007477|ref|XP_549034.2| PREDICTED: similar to cold shock domain protein A [Canis familiaris] Length = 315 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 RGS+KW+N GYGFI+ + E DVF+H++A+ ++ +G+ V +D VQ Sbjct: 26 RGSVKWFNVKNGYGFISRHDTQE---DVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQG 82 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 83 E-RGTEAANV 91 >gi|14250672|gb|AAH08801.1| Cold shock domain protein A [Homo sapiens] gi|18314511|gb|AAH21926.1| Cold shock domain protein A [Homo sapiens] gi|123984533|gb|ABM83612.1| cold shock domain protein A [synthetic construct] gi|123998509|gb|ABM86856.1| cold shock domain protein A [synthetic construct] gi|208966070|dbj|BAG73049.1| cold shock domain protein A [synthetic construct] Length = 372 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 93 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149 Query: 61 ANGKYSAEN 69 G +A Sbjct: 150 -KGAEAANV 157 >gi|71679965|gb|AAI00455.1| Ybx2 protein [Mus musculus] Length = 171 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 7/59 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 97 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEG 152 >gi|13488214|ref|NP_085668.1| cold-shock protein [Mesorhizobium loti MAFF303099] gi|14027917|dbj|BAB54509.1| cold-shock protein [Mesorhizobium loti MAFF303099] Length = 97 Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KWY P+KG+GFI P+ DVF+H S + +GL L EGQ V + G Sbjct: 33 GTVKWYKPEKGFGFIAPD---NGEKDVFVHASTLTRSGLSALVEGQKV-FVACGQGKKG 87 >gi|291303304|ref|YP_003514582.1| cold-shock DNA-binding domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290572524|gb|ADD45489.1| cold-shock DNA-binding domain protein [Stackebrandtia nassauensis DSM 44728] Length = 144 Score = 75.0 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWYN +KG+GF++ + + G+DVFLHR A+ G+ L GQ + Y V Sbjct: 12 VPTGRVKWYNAEKGFGFVSRD---DGGNDVFLHRDAL-PEGVTELKAGQKLEYGIVDTRR 67 Query: 62 NGKYSAENLKLV 73 A ++ LV Sbjct: 68 G--VQAMSVTLV 77 >gi|118468185|ref|YP_889929.1| cold-shock DNA-binding domain-containing protein [Mycobacterium smegmatis str. MC2 155] gi|118169472|gb|ABK70368.1| 'Cold-shock' DNA-binding domain protein [Mycobacterium smegmatis str. MC2 155] Length = 149 Score = 75.0 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V + Sbjct: 14 VPTGKVKWYDAEKGFGFLSQE----DGEDVYVRSSAL-PAGVEALKSGQRVEFGVAAGRR 68 Query: 62 NGKYSAENLKLVPK 75 A +LKL+ Sbjct: 69 G--PQALSLKLIDP 80 >gi|332838567|ref|XP_520744.3| PREDICTED: DNA-binding protein A isoform 2 [Pan troglodytes] Length = 374 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 95 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151 Query: 61 ANGKYSAEN 69 G +A Sbjct: 152 -KGAEAANV 159 >gi|148680545|gb|EDL12492.1| Y box protein 2 [Mus musculus] Length = 268 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 6 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 62 Query: 61 ANGKYSAEN 69 G +A Sbjct: 63 -KGAEAANV 70 >gi|224586882|ref|NP_003642.3| DNA-binding protein A isoform a [Homo sapiens] gi|97536050|sp|P16989|DBPA_HUMAN RecName: Full=DNA-binding protein A; AltName: Full=Cold shock domain-containing protein A; AltName: Full=Single-strand DNA-binding protein NF-GMB gi|1167838|emb|CAA64631.1| DNA-binding protein [Homo sapiens] gi|15026972|emb|CAA51261.1| cold shock domain protein A [Homo sapiens] gi|15990406|gb|AAH15564.1| Cold shock domain protein A [Homo sapiens] gi|119616607|gb|EAW96201.1| cold shock domain protein A, isoform CRA_a [Homo sapiens] gi|119616608|gb|EAW96202.1| cold shock domain protein A, isoform CRA_a [Homo sapiens] gi|189054724|dbj|BAG37363.1| unnamed protein product [Homo sapiens] Length = 372 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 93 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149 Query: 61 ANGKYSAEN 69 G +A Sbjct: 150 -KGAEAANV 157 >gi|331014236|gb|EGH94292.1| cold shock protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 41 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 4/45 (8%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 KW+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V Sbjct: 1 KWFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQV 41 >gi|297469975|ref|XP_602127.4| PREDICTED: cold shock domain protein A short-like [Bos taurus] gi|297493214|ref|XP_002700207.1| PREDICTED: cold shock domain protein A short-like [Bos taurus] gi|296470657|gb|DAA12772.1| cold shock domain protein A short-like [Bos taurus] Length = 370 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLF-NLTEGQLVTYDYVQND 60 G++ W+ KGYGFI + E DVF+H +A+ ++ +G+ V +D VQ + Sbjct: 70 GTVVWFKDKKGYGFIRRHDTQE---DVFVHHTAITGETPCKYRGSVDDGETVEFDVVQGE 126 Query: 61 ANGKYSAEN 69 G +A+ Sbjct: 127 -RGTEAAKV 134 >gi|194333568|ref|YP_002015428.1| cold-shock DNA-binding domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194311386|gb|ACF45781.1| cold-shock DNA-binding domain protein [Prosthecochloris aestuarii DSM 271] Length = 95 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQN 59 M + +KW++ KGYGFI + E G+D+F+H SA+ S L + V ++ Q Sbjct: 1 MPIKSKVKWFDGKKGYGFI---LNPEGGEDIFVHFSAIVSDLTFKVLNQDADVEFELDQT 57 Query: 60 DANGKYSAENLK 71 A N++ Sbjct: 58 QKG--LQARNVR 67 >gi|23464629|ref|NP_695232.1| cold shock protein [Bifidobacterium longum NCC2705] gi|189438864|ref|YP_001953945.1| cold shock protein [Bifidobacterium longum DJO10A] gi|213691589|ref|YP_002322175.1| putative cold-shock DNA-binding domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227546726|ref|ZP_03976775.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620702|ref|ZP_04663733.1| CspA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454610|ref|YP_003661753.1| putative cold-shock DNA-binding domain-containing protein [Bifidobacterium longum subsp. longum JDM301] gi|317481715|ref|ZP_07940747.1| cold-shock' DNA-binding domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689677|ref|YP_004209411.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F] gi|322691638|ref|YP_004221208.1| cold shock protein [Bifidobacterium longum subsp. longum JCM 1217] gi|23325186|gb|AAN23868.1| cold shock protein [Bifidobacterium longum NCC2705] gi|189427299|gb|ACD97447.1| Cold shock protein [Bifidobacterium longum DJO10A] gi|213523050|gb|ACJ51797.1| putative cold-shock DNA-binding domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227212688|gb|EEI80569.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516278|gb|EEQ56145.1| CspA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296184041|gb|ADH00923.1| putative cold-shock DNA-binding domain protein [Bifidobacterium longum subsp. longum JDM301] gi|316916829|gb|EFV38219.1| cold-shock' DNA-binding domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456494|dbj|BAJ67116.1| cold shock protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320457677|dbj|BAJ68298.1| cold shock protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320461013|dbj|BAJ71633.1| cold shock protein [Bifidobacterium longum subsp. infantis 157F] Length = 79 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57 + +G++K++ KG+GFI P+ + G+DVF+H + + G L EG V Y Sbjct: 1 MAQGTVKFFLAKKGFGFIQPD---DGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPA 57 Query: 58 QNDANGKYSAENLKLVPKSS 77 + G + + +KL + Sbjct: 58 SSG-KGTQAKDVVKLSSGEA 76 >gi|190571462|ref|YP_001975820.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018865|ref|ZP_03334673.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357734|emb|CAQ55185.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995816|gb|EEB56456.1| cold-shock domain family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 83 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 16/84 (19%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF--NLT--------EGQL 51 + G+IKW+N +KGYGFI PEG G+DVF+H S + +G+ L +G+ Sbjct: 1 MEFGNIKWFNVEKGYGFIKPEGK---GEDVFVHVSTLERSGIRPDELRGEDKKRGMKGER 57 Query: 52 VTYDY-VQNDANG--KYSAENLKL 72 V+Y+ + NG K SA NL+L Sbjct: 58 VSYELKEERGRNGEDKKSAINLRL 81 >gi|45382293|ref|NP_990737.1| Rous sarcoma virus transcription enhancer factor II [Gallus gallus] gi|727428|gb|AAA64706.1| Rous sarcoma virus transcription enhancer factor II [Gallus gallus] Length = 298 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 90 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLASVGDGETVEFDVVEGE 146 Query: 61 ANGKYSAEN 69 G +A Sbjct: 147 -KGAEAANV 154 >gi|255535684|ref|YP_003096055.1| Cold shock protein CspA [Flavobacteriaceae bacterium 3519-10] gi|255341880|gb|ACU07993.1| Cold shock protein CspA [Flavobacteriaceae bacterium 3519-10] Length = 63 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFITP G+D+F+H S V + + E VTY+ Q + Sbjct: 1 MQEGTVKFFNETKGFGFITP---LNGGEDIFVHTSGVNTK----IRENDKVTYEVQQGNK 53 Query: 62 NGKYSAENLKLV 73 +A N+KLV Sbjct: 54 G--LNAVNVKLV 63 >gi|288558834|sp|P45441|YBX2B_XENLA RecName: Full=Y-box-binding protein 2-B; AltName: Full=Cytoplasmic RNA-binding protein p54; AltName: Full=Frog Y-box protein 2-B; Short=FRGY2b; AltName: Full=Messenger ribonucleoprotein particle 3; Short=mRNP3 gi|161611735|gb|AAI55914.1| Csda-A protein [Xenopus laevis] Length = 324 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI +S +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 43 QGTVKWFNVRNGYGFI---NRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 100 E-KGAEAANV 108 >gi|194207608|ref|XP_001916443.1| PREDICTED: similar to rCG50488 [Equus caballus] Length = 364 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 101 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 157 Query: 61 ANGKYSAEN 69 G +A Sbjct: 158 -KGAEAANV 165 >gi|197294834|ref|YP_001799375.1| cold shock protein [Candidatus Phytoplasma australiense] gi|171854161|emb|CAM12154.1| Cold shock protein, similar to Csp of Bacteriophage bIL312 [Candidatus Phytoplasma australiense] Length = 77 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 8/74 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQN 59 +G+ +W++ DKGYGFI + G DVF+H S++ + G L + V + ++ Sbjct: 5 RQQGTCRWFSGDKGYGFIV----SAEGKDVFVHYSSIQTEVQGRRTLNKDDKVEFSIKEH 60 Query: 60 DANGKYSAENLKLV 73 D + A ++ ++ Sbjct: 61 DN--RIQAVDVVVI 72 >gi|297691167|ref|XP_002822965.1| PREDICTED: DNA-binding protein A-like [Pongo abelii] Length = 371 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 92 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 148 Query: 61 ANGKYSAEN 69 G +A Sbjct: 149 -KGAEAANV 156 >gi|950340|gb|AAA79243.1| DNA-binding protein A [Homo sapiens] Length = 342 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 93 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149 Query: 61 ANGKYSAEN 69 G +A Sbjct: 150 -KGAEAANV 157 >gi|189299|gb|AAA59949.1| DNA-binding protein [Homo sapiens] Length = 320 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 58 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114 Query: 61 ANGKYSAEN 69 G +A Sbjct: 115 -KGAEAANV 122 >gi|331699393|ref|YP_004335632.1| cold-shock DNA-binding domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326954082|gb|AEA27779.1| cold-shock DNA-binding domain protein [Pseudonocardia dioxanivorans CB1190] Length = 156 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ DKG+GF+ + G+DV++ +SA+ G+ +L GQ V + + Sbjct: 29 VPTGRVKWYDADKGFGFLAQD----GGEDVYVRKSAL-PTGVESLKSGQRVEFGMAEGRR 83 Query: 62 NGKYSAENLKLV 73 A ++LV Sbjct: 84 G--PQALQVRLV 93 >gi|56754985|gb|AAW25675.1| SJCHGC00971 protein [Schistosoma japonicum] Length = 250 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|116334042|ref|YP_795569.1| cold shock protein [Lactobacillus brevis ATCC 367] gi|116099389|gb|ABJ64538.1| cold-shock DNA-binding protein family [Lactobacillus brevis ATCC 367] Length = 74 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K YN +G+GFIT DVF++ + + G L GQ V + VQ Sbjct: 1 MLTGKVKSYNEQRGFGFITTPADG----DVFVYYTGIIGEGFRKLEAGQTVQFVIVQG-M 55 Query: 62 NGKYSAENLKLVPKSSN 78 G +A+ +V S+ Sbjct: 56 RGPQAAKVTPVVTASTE 72 >gi|1083796|pir||S48055 RYB-a protein - rat Length = 291 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 84 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGE 140 Query: 61 ANGKYSAEN 69 G +A Sbjct: 141 -KGAEAANV 148 >gi|289641675|ref|ZP_06473835.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] gi|289508544|gb|EFD29483.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] Length = 131 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ DKG+GF++ + G DVF+H++A+ G+ L G V + + Sbjct: 1 MPTGRVKWFDVDKGFGFLSRD----DGGDVFVHKAAL-PPGVDRLKPGDRVEFGIATSRR 55 Query: 62 NGKYSAENLKLVPKS 76 + + L P S Sbjct: 56 GDQALSVRLLAAPPS 70 >gi|327284528|ref|XP_003226989.1| PREDICTED: protein lin-28 homolog B-like [Anolis carolinensis] Length = 320 Score = 74.6 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 101 TGHCKWFNVRMGFGFISMLHREGSPLDSPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 160 Query: 60 DAN 62 Sbjct: 161 SKG 163 >gi|300779123|ref|ZP_07088981.1| CspA family cold shock transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300504633|gb|EFK35773.1| CspA family cold shock transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 64 Score = 74.6 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 8/71 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFI+P T+ D+F+H S + S ++ E V +D ++D Sbjct: 1 MQQGTVKFFNEAKGFGFISP---TDGSKDIFVHSSGLDS---RSIRENDKVVFDVQKSDK 54 Query: 62 NGKYSAENLKL 72 +A N+KL Sbjct: 55 G--LNAVNVKL 63 >gi|311256155|ref|XP_003126523.1| PREDICTED: DNA-binding protein A-like [Sus scrofa] Length = 380 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 102 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 158 Query: 61 ANGKYSAEN 69 G +A Sbjct: 159 -KGAEAANV 166 >gi|326677327|ref|XP_003200812.1| PREDICTED: protein lin-28 homolog B-like, partial [Danio rerio] Length = 211 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GFI+ S + DVF+H+S + G +L EG+ V + + ++ Sbjct: 114 GYCKWFNVRMGFGFISMTSSEGKPVDPPLDVFVHQSKLVMEGFRSLREGEQVEFTFKRSS 173 Query: 61 AN 62 Sbjct: 174 KG 175 >gi|111021931|ref|YP_704903.1| cold shock protein [Rhodococcus jostii RHA1] gi|110821461|gb|ABG96745.1| probable cold shock protein [Rhodococcus jostii RHA1] Length = 136 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF++ E G+DV++ SA+ G+ L GQ V + Sbjct: 1 MPTGKVKWYDVEKGFGFLSQE----EGEDVYVRSSAL-PEGVEGLKAGQRVEFGMAAGRR 55 Query: 62 NGKYSAENLKLVPKS 76 A +LK++ + Sbjct: 56 G--PQALSLKVLDPA 68 >gi|116326594|ref|YP_796515.1| cold-shock DNA-binding protein family protein [Lactococcus lactis subsp. cremoris SK11] gi|125624080|ref|YP_001032563.1| cold shock protein cspC [Lactococcus lactis subsp. cremoris MG1363] gi|190571793|ref|YP_001966472.1| CSPC [Lactococcus lactis] gi|281492699|ref|YP_003354679.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|76574949|gb|ABA47418.1| cold shock protein C [Lactococcus lactis] gi|108736192|gb|ABG00321.1| CSPC [Lactococcus lactis] gi|116108962|gb|ABJ74084.1| cold-shock DNA-binding protein family [Lactococcus lactis subsp. cremoris SK11] gi|124492888|emb|CAL97847.1| cold shock protein cspC [Lactococcus lactis subsp. cremoris MG1363] gi|281376356|gb|ADA65846.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|300070849|gb|ADJ60249.1| cold-shock protein [Lactococcus lactis subsp. cremoris NZ9000] gi|326406196|gb|ADZ63267.1| cold shock protein CspC [Lactococcus lactis subsp. lactis CV56] gi|326407855|gb|ADZ64926.1| cold shock protein CspC [Lactococcus lactis subsp. lactis CV56] Length = 66 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G+I W+N DKGYGFI + DVF + ++ EGQ VT+D + + Sbjct: 1 MNKGTINWFNADKGYGFI----MADDMQDVFAYLLSIQGNDFKKYDEGQKVTFDI-KMTS 55 Query: 62 NGKYSAEN 69 G+Y++ Sbjct: 56 RGRYASNV 63 >gi|84497535|ref|ZP_00996357.1| Putative transcriptional regulator cold shock protein [Janibacter sp. HTCC2649] gi|84382423|gb|EAP98305.1| Putative transcriptional regulator cold shock protein [Janibacter sp. HTCC2649] Length = 314 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ WY+ KG+GFIT + G DVF+H +A GL L EG VTYD V ++ Sbjct: 158 GTVSWYDGGKGFGFITSDS---GGPDVFVHVRELA-DGLTELGEGDRVTYDVVVSEKG-- 211 Query: 65 YSAENLKLVPKSS 77 A +++L S+ Sbjct: 212 PQARDVRLARGSA 224 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 6/77 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60 + G+++W++ D+G+GFI + +D+++H S + S + L EGQ+V ++ + D Sbjct: 1 MTEGTVRWFDTDRGFGFIA---LGQDAEDLYVHASEIVSADAMKVLREGQVVEFEVGEGD 57 Query: 61 ANGKYSAENLKLVPKSS 77 A +++ + Sbjct: 58 RG--PQARRVRVTADQA 72 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 5/60 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ WY P KGYGFITP+G G ++F+H SA+ G+ L+E Q V + V + + Sbjct: 81 GTVSWYEPSKGYGFITPDG---GGTEIFVHSSAIVGGGV--LSEAQRVAFLVVDGERGPQ 135 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G ++ Y+ ++G+GFI P+ G D+F+H S + A L G V Y Q+D Sbjct: 252 EGVVERYDAERGFGFIAPDA---GGADLFVHVSVLRGA--EALEPGDRVRYQVRQSDRGP 306 Query: 64 K 64 + Sbjct: 307 Q 307 >gi|260460198|ref|ZP_05808450.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|259033843|gb|EEW35102.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] Length = 199 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KWY+P KG+GFI P + D F+H +A+ +G+ L EGQ+V + Q Sbjct: 135 EGTVKWYDPQKGFGFIAP---NKGEKDAFVHATALTRSGISELLEGQMVLVECGQGKKG 190 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + W+N KG+GF+ G + +L + ++G ++ EG + + Sbjct: 47 VMWFNAGKGFGFV----KLLDGTEAYLPVRVLEASGTRDVCEGTRLKVTIEERPRG 98 >gi|505133|dbj|BAA05907.1| RYB-a [Rattus norvegicus] Length = 291 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 84 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNHVKYLRSVGDGETVEFDVVEGE 140 Query: 61 ANGKYSAEN 69 G +A Sbjct: 141 -KGAEAANV 148 >gi|261344285|ref|ZP_05971929.1| cold-shock DNA-binding domain protein [Providencia rustigianii DSM 4541] gi|282567888|gb|EFB73423.1| cold-shock DNA-binding domain protein [Providencia rustigianii DSM 4541] Length = 71 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H G +KW++ +GYGFI+P GDD+F+ ++A+ + +L+EGQ V + +N Sbjct: 5 LHMGRVKWFDAKEGYGFISP---CNGGDDIFVTTKSLANKKIKSLSEGQNVEFSVTRNSD 61 Query: 62 N 62 Sbjct: 62 G 62 >gi|148645030|gb|ABR01045.1| Csp [uncultured Geobacter sp.] Length = 56 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 +N KG+GF+ E G+DVF H SA+A G +L EG VT++ + G +A Sbjct: 1 FNDGKGFGFLEQE----GGEDVFCHFSAIAGEGFKSLAEGDRVTFEVTKG-PKGLQAANV 55 >gi|146312143|ref|YP_001177217.1| cold-shock DNA-binding protein family protein [Enterobacter sp. 638] gi|145319019|gb|ABP61166.1| cold-shock DNA-binding protein family [Enterobacter sp. 638] Length = 72 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KWY DKG+GFI+P + G D+ +H S + L EGQ V Y + Sbjct: 6 RGLVKWYKEDKGFGFISP---LDGGKDISVHVSNLKGDDCQTLFEGQKVEYTIYNGNKG- 61 Query: 64 KYSAENL 70 +A N+ Sbjct: 62 -PAASNV 67 >gi|3821913|gb|AAC69698.1| major cold shock protein [Lactococcus lactis subsp. lactis] gi|3821917|gb|AAC69700.1| major cold shock protein [Lactococcus lactis subsp. cremoris] Length = 50 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 5/55 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 KG+GFIT +E G DVF H S + ++G L EGQ VT+D V+ G +A Sbjct: 1 KGFGFIT----SEDGQDVFAHFSQIQTSGFKTLDEGQKVTFD-VEAGQRGPQAAN 50 >gi|1402755|gb|AAC80244.1| major cold-shock protein [Lactobacillus casei] Length = 45 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 DKGYGFIT E G DVF+H SA+ G +L EGQ V+YD Q+D Sbjct: 1 DKGYGFIT----GEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSDR 45 >gi|301789934|ref|XP_002930376.1| PREDICTED: DNA-binding protein A-like [Ailuropoda melanoleuca] Length = 335 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 58 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114 Query: 61 ANGKYSAEN 69 G +A Sbjct: 115 -KGAEAANV 122 >gi|297824943|ref|XP_002880354.1| hypothetical protein ARALYDRAFT_480954 [Arabidopsis lyrata subsp. lyrata] gi|297326193|gb|EFH56613.1| hypothetical protein ARALYDRAFT_480954 [Arabidopsis lyrata subsp. lyrata] Length = 198 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 3/46 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47 +GS+KW++ KG+GFITP + GDD+F+H+S++ S G +L Sbjct: 13 RRKGSVKWFDTQKGFGFITP---NDGGDDLFVHQSSIRSEGFRSLA 55 >gi|145219984|ref|YP_001130693.1| cold-shock DNA-binding protein family protein [Prosthecochloris vibrioformis DSM 265] gi|145206148|gb|ABP37191.1| cold-shock DNA-binding protein family [Chlorobium phaeovibrioides DSM 265] Length = 85 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + + +KW++ KGYGFI E G+D+F+H SA+ S L + V +++ Sbjct: 1 MAKSKVKWFDGKKGYGFI---LHPEGGEDIFVHFSAINSEQPFKVLNQDAEVEFEF-DTT 56 Query: 61 ANGKYSAENLKLVPKSSN 78 G + L+L S N Sbjct: 57 QKGLQAKNVLELTESSQN 74 >gi|171743331|ref|ZP_02919138.1| hypothetical protein BIFDEN_02462 [Bifidobacterium dentium ATCC 27678] gi|306823276|ref|ZP_07456652.1| cold-shock domain family protein [Bifidobacterium dentium ATCC 27679] gi|309801917|ref|ZP_07696032.1| cold-shock DNA-binding domain protein [Bifidobacterium dentium JCVIHMP022] gi|171278945|gb|EDT46606.1| hypothetical protein BIFDEN_02462 [Bifidobacterium dentium ATCC 27678] gi|304553908|gb|EFM41819.1| cold-shock domain family protein [Bifidobacterium dentium ATCC 27679] gi|308221473|gb|EFO77770.1| cold-shock DNA-binding domain protein [Bifidobacterium dentium JCVIHMP022] Length = 129 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++W++ +KGYGFI E G DVFL A+ G+ L +G V Y ++ Sbjct: 1 MPSGRVRWFDTNKGYGFIQ----NEQGADVFLPAVAL-PEGVKTLRKGAKVEYSVIEGRR 55 Query: 62 NGKYSAENLKLVPKS 76 A N+ LV + Sbjct: 56 G--PQAMNVTLVASA 68 >gi|227494398|ref|ZP_03924714.1| cold shock protein [Actinomyces coleocanis DSM 15436] gi|226832132|gb|EEH64515.1| cold shock protein [Actinomyces coleocanis DSM 15436] Length = 125 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K+++ DKG+GFI ++ G+ VFLH SA+ L + G V + + + Sbjct: 1 MPTGKVKFFDADKGFGFIE----SDDGESVFLHASAL-PENLKHPKNGARVEFSMI-DGR 54 Query: 62 NGKYSAENLKLVPKS 76 G A ++ L+P++ Sbjct: 55 RGPQ-AIHVNLLPEA 68 >gi|161612267|gb|AAI55915.1| FRGY2 protein [Xenopus laevis] Length = 342 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 43 QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 100 E-KGAEAANV 108 >gi|147902111|ref|NP_001081274.1| Y-box-binding protein 2-A [Xenopus laevis] gi|288558836|sp|P21574|YBX2A_XENLA RecName: Full=Y-box-binding protein 2-A; AltName: Full=Cytoplasmic RNA-binding protein p56; AltName: Full=Frog Y-box protein 2; Short=FRG Y2; AltName: Full=Frog Y-box protein 2-A; Short=FRGY2a; AltName: Full=Messenger ribonucleoprotein particle 4; Short=mRNP4 gi|214157|gb|AAA49716.1| DNA-binding protein [Xenopus laevis] gi|213623410|gb|AAI69706.1| Sequence -specific binding protein [Xenopus laevis] gi|213625048|gb|AAI69704.1| Sequence -specific binding protein [Xenopus laevis] Length = 336 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 43 QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEG 99 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 100 E-KGAEAANV 108 >gi|181486|gb|AAA35750.1| DNA-binding protein B [Homo sapiens] Length = 364 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 101 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 157 Query: 61 ANGKYSAEN 69 G +A Sbjct: 158 -KGAEAANV 165 >gi|281490767|ref|YP_003352747.1| cold-shock protein [Lactococcus lactis subsp. lactis KF147] gi|281374536|gb|ADA64057.1| Cold-shock protein [Lactococcus lactis subsp. lactis KF147] Length = 66 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G+I W+N DKGYGFI + DVF + ++ EGQ VT+D + + Sbjct: 1 MNKGTINWFNADKGYGFIMADDR----QDVFAYLLSIQGNDFKKYDEGQKVTFDI-KMTS 55 Query: 62 NGKYSAEN 69 G+Y++ Sbjct: 56 RGRYASNV 63 >gi|296277238|ref|ZP_06859745.1| cold shock protein [Staphylococcus aureus subsp. aureus MR1] Length = 55 Score = 73.8 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 +KG+GFI E +G DVF+H S +AS G L EGQ VT++ + A N++ Sbjct: 1 EKGFGFIEQE----NGGDVFVHFSGIASDGYKTLEEGQKVTFEITEGQRG--DQAVNVQT 54 Query: 73 V 73 V Sbjct: 55 V 55 >gi|3121921|sp|Q44078|CSPA_AERHY RecName: Full=Major cold-shock protein gi|1402731|gb|AAC80230.1| major cold-shock protein [Aeromonas hydrophila] Length = 46 Score = 73.8 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFI+P T+ DVF+H SA+ + G L EGQ V + Q Sbjct: 1 EKGFGFISP---TDGSKDVFVHFSAIQTPGFKTLDEGQRVEFTIEQGQK 46 >gi|8100512|gb|AAF72336.1|AF171062_1 Y-box protein ZONAB-B [Canis lupus familiaris] Length = 372 Score = 73.8 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H +A+ L ++ +G+ V +D V+ + Sbjct: 95 GTVKWFNVRNGYGFI---NRNDTKEDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151 Query: 61 ANGKYSAEN 69 G +A Sbjct: 152 -KGAEAANV 159 >gi|323342405|ref|ZP_08082637.1| cold shock protein B [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463517|gb|EFY08711.1| cold shock protein B [Erysipelothrix rhusiopathiae ATCC 19414] Length = 65 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K +N +KG+GFIT E G D+F H + + G + EG V ++ V+++ Sbjct: 2 KGKVKTFNKNKGFGFIT----AEDGQDIFFHYTHLIMEGFKTIEEGTEVEFELVESERG- 56 Query: 64 KYSAENL 70 A N+ Sbjct: 57 -LQAHNI 62 >gi|254498195|ref|ZP_05110944.1| cold shock domain-contain protein [Legionella drancourtii LLAP12] gi|254352603|gb|EET11389.1| cold shock domain-contain protein [Legionella drancourtii LLAP12] Length = 73 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G +KW+ +KG+GFI E G D F+H S + + G L +G V++ + Sbjct: 7 KQGIVKWFQKEKGFGFIQCE-----GQDYFVHFSGIIAEGYKTLPDGAHVSFK-TMDGKK 60 Query: 63 GKYSAEN 69 GK + E Sbjct: 61 GKQAHEV 67 >gi|3121924|sp|Q46051|CSPA_CITFR RecName: Full=Major cold shock protein gi|3121925|sp|Q46664|CSPA_ENTAE RecName: Full=Major cold shock protein gi|3121930|sp|Q53816|CSPA_SHIBO RecName: Full=Major cold shock protein gi|3121934|sp|Q56178|CSPA_SALVI RecName: Full=Major cold shock protein gi|1402743|gb|AAC80237.1| major cold-shock protein [Citrobacter freundii] gi|1402745|gb|AAC80236.1| major cold-shock protein [Citrobacter freundii] gi|1402747|gb|AAC80238.1| major cold-shock protein [Enterobacter aerogenes] gi|1402749|gb|AAC80239.1| major cold-shock protein [Escherichia coli] gi|1402773|gb|AAC80240.1| major cold-shock protein [Shigella boydii] gi|1402779|gb|AAC80241.1| major cold-shock protein [Shigella flexneri] gi|1402785|gb|AAC80252.1| major cold-shock protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|1402787|gb|AAC80253.1| major cold-shock protein [Salmonella enterica subsp. enterica serovar Virchow] Length = 46 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 DKG+GFITP+ + DVF+H SA+ + G +L EGQ V++ Sbjct: 1 DKGFGFITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAK 46 >gi|209965446|ref|YP_002298361.1| Cold shock-like protein CspG [Rhodospirillum centenum SW] gi|209958912|gb|ACI99548.1| Cold shock-like protein CspG [Rhodospirillum centenum SW] Length = 101 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K+++ DKG+GF+TP+G G DVF+H +A+ +G+ L Q V Sbjct: 37 EGTVKFFSSDKGFGFVTPDG---GGKDVFVHVTALERSGVRTLMPEQRVRIQTSMGQKG- 92 Query: 64 KYSAENLKLV 73 A ++++ Sbjct: 93 -PQANRVEIL 101 >gi|197245601|gb|AAI68507.1| Ybx1 protein [Danio rerio] Length = 310 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97 Query: 61 ANGKYSAEN 69 G +A Sbjct: 98 -KGAEAANV 105 >gi|163786330|ref|ZP_02180778.1| cold shock protein [Flavobacteriales bacterium ALC-1] gi|159878190|gb|EDP72246.1| cold shock protein [Flavobacteriales bacterium ALC-1] Length = 84 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFIT EGS D F+H S + + EG V +D + Sbjct: 22 MSTGTVKFFNDSKGFGFITEEGSD---KDHFVHISGLVDE----IKEGDNVEFDLTEGKK 74 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 75 G--LNAVNVKVI 84 >gi|153938873|ref|YP_001391027.1| cold shock protein [Clostridium botulinum F str. Langeland] gi|170756146|ref|YP_001781321.1| cold shock protein [Clostridium botulinum B1 str. Okra] gi|152934769|gb|ABS40267.1| cold shock protein [Clostridium botulinum F str. Langeland] gi|169121358|gb|ACA45194.1| cold shock protein [Clostridium botulinum B1 str. Okra] gi|295319083|gb|ADF99460.1| cold shock protein [Clostridium botulinum F str. 230613] Length = 69 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60 +H G++KW++ ++GYGFI +G DV++H + +L EG+ V +D V+ + Sbjct: 3 MHTGTVKWFDNERGYGFIA----GNNGKDVYVHYMQIKEKTHNKDLHEGEEVLFDIVEKE 58 Query: 61 ANGKYSAENLKLV 73 A N++ + Sbjct: 59 KG--PIAINVQKL 69 >gi|83594086|ref|YP_427838.1| cold-shock DNA-binding protein family protein [Rhodospirillum rubrum ATCC 11170] gi|83577000|gb|ABC23551.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC 11170] Length = 70 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 + G++KW+N KG+GFI P+ + G D F+H SAV + + Sbjct: 1 MTTGTVKWFNVQKGFGFIAPD---DGGSDAFVHISAVERSSDRS 41 >gi|291411891|ref|XP_002722201.1| PREDICTED: cold shock domain protein A [Oryctolagus cuniculus] Length = 376 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 98 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 154 Query: 61 ANGKYSAEN 69 G +A Sbjct: 155 -KGAEAANV 162 >gi|78186480|ref|YP_374523.1| cold-shock DNA-binding domain-containing protein [Chlorobium luteolum DSM 273] gi|78166382|gb|ABB23480.1| cold-shock DNA-binding protein family [Chlorobium luteolum DSM 273] Length = 89 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + R +KW++ KGYGFI E G+D+F+H SA+ S L + V ++ Sbjct: 1 MARSKVKWFDGKKGYGFI---LHPEGGEDIFVHFSAIESDQPFKVLNQDADVDFEIDTTQ 57 Query: 61 ANGKYSAENLK 71 A+N++ Sbjct: 58 KG--LQAKNVR 66 >gi|319948064|ref|ZP_08022237.1| CspB [Dietzia cinnamea P4] gi|319438269|gb|EFV93216.1| CspB [Dietzia cinnamea P4] Length = 133 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF++ E G+DV++ A+ AG+ L Q V +D V + Sbjct: 1 MPSGKVKWYDAEKGFGFLSQE----GGEDVYVRADAL-PAGVETLRPRQRVEFDMV-SGR 54 Query: 62 NGKYSAENL 70 G + + Sbjct: 55 RGPQALRVV 63 >gi|209966917|ref|YP_002299832.1| cold shock-like protein CspA [Rhodospirillum centenum SW] gi|209960383|gb|ACJ01020.1| cold shock-like protein CspA [Rhodospirillum centenum SW] Length = 199 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 GS+KW+ DKG+GF+T + + G DVF+H+S + AGL +L G+ V + G Sbjct: 134 EGSVKWFKDDKGFGFVTTD---DGGKDVFVHKSILRRAGLESLQSGERVLMRVTEA-PKG 189 Query: 64 KYS 66 + + Sbjct: 190 REA 192 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 R ++KW+N KG+GF+ P + D FLH S ++ GL +L EG V + G Sbjct: 44 RATVKWFNGVKGFGFVAP---ADGTPDAFLHASVLSRVGLSDLAEGAEV-MVVIGPGPKG 99 Query: 64 KYSAENLKLV 73 ++LV Sbjct: 100 PQ---VIRLV 106 >gi|332162199|ref|YP_004298776.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666429|gb|ADZ43073.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 69 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +GYGFI+P + DV++ ++A+A+ +L+EGQ V + ++ Sbjct: 3 LKMGRVKWFNQSEGYGFISPH---DGSLDVYVSKTAIANTKNKSLSEGQDVEFSTYRS-I 58 Query: 62 NGKYSAENL 70 +G +A+ + Sbjct: 59 HGPPAADVI 67 >gi|221116635|ref|XP_002154000.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 719 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 449 GTVKWFNVRNGYGFI---HRNDTQNDVFVHQTAIVKNNPNKYLRSVGDGETVEFDVVEGV 505 Query: 61 ANGKYSAENLK 71 + A N+ Sbjct: 506 KG--HEAINVT 514 >gi|119718152|ref|YP_925117.1| cold-shock DNA-binding protein family protein [Nocardioides sp. JS614] gi|119538813|gb|ABL83430.1| cold-shock DNA-binding protein family [Nocardioides sp. JS614] Length = 131 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ +KG+GF++ E +G DV++ RS AG +L G V + Q Sbjct: 1 MPTGKVKWFDAEKGFGFLSQE----NGPDVYV-RSEALPAGTSSLKAGTRVEFGIAQGRR 55 Query: 62 NGKYSAENLKLV 73 A ++++ Sbjct: 56 G--DQALQVRIL 65 >gi|237804204|ref|ZP_04591789.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026185|gb|EGI06241.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 41 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 4/45 (8%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 W+N +KG+GFITP +SGDD+F+H A+ S G +L EGQ V+ Sbjct: 1 WFNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEGQQVS 41 >gi|55822802|ref|YP_141243.1| cold shock protein A [Streptococcus thermophilus CNRZ1066] gi|55738787|gb|AAV62428.1| cold shock protein A [Streptococcus thermophilus CNRZ1066] Length = 72 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G+I W+N DKGYGFI + DVF + ++ EGQ VT+D Sbjct: 4 MNKGTINWFNADKGYGFI----MADDMQDVFAYLISIQGNDFKKYDEGQKVTFDIKMTSR 59 Query: 62 N 62 Sbjct: 60 G 60 >gi|213510928|ref|NP_001133543.1| Y-box-binding protein 2-A [Salmo salar] gi|209154422|gb|ACI33443.1| Y-box-binding protein 2-A [Salmo salar] Length = 328 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D V+ Sbjct: 31 QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEA 87 Query: 60 DANGKYSAEN 69 A G +A Sbjct: 88 -AKGSEAANV 96 >gi|119503292|ref|ZP_01625376.1| cold shock protein, CspA family-like protein [marine gamma proteobacterium HTCC2080] gi|119460938|gb|EAW42029.1| cold shock protein, CspA family-like protein [marine gamma proteobacterium HTCC2080] Length = 138 Score = 73.4 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 H G+IKW+N KG+GFI + G +VF+H V ++ +GQ V Y +D Sbjct: 74 HEGNIKWFNATKGFGFIVGD----DGAEVFVHYRNVEGLTKRSIKQGQRVAYSVRASDRG 129 Query: 63 GKYSAENLKLV 73 AE +K V Sbjct: 130 --PQAEGVKAV 138 >gi|332812662|ref|XP_001136258.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan troglodytes] Length = 325 Score = 73.4 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 62 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 118 Query: 61 ANGKYSAEN 69 G +A Sbjct: 119 -KGAEAANV 126 >gi|194751983|ref|XP_001958302.1| GF10852 [Drosophila ananassae] gi|190625584|gb|EDV41108.1| GF10852 [Drosophila ananassae] Length = 347 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G++V +D V Sbjct: 62 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 118 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 119 E-KGNEAANV 127 >gi|62089378|dbj|BAD93133.1| CSDA protein variant [Homo sapiens] Length = 134 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 26 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 82 Query: 61 ANGKYSAEN 69 G +A Sbjct: 83 -KGAEAANV 90 >gi|89068841|ref|ZP_01156224.1| cold shock DNA-binding domain protein [Oceanicola granulosus HTCC2516] gi|89045611|gb|EAR51674.1| cold shock DNA-binding domain protein [Oceanicola granulosus HTCC2516] Length = 171 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++KW++P KG+GFI E + G D+ LH + + + G ++ +G + + VQ+ Sbjct: 1 MTVTGTVKWFDPAKGFGFIVAE---DGGPDILLHANVLRNFGQSSVADGSGIVVE-VQDT 56 Query: 61 ANGKYSAENLKLVPKS 76 GK + ++L P Sbjct: 57 PRGKQAVAVVELTPPE 72 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G E DVF+H + +GL +L G+ ++ V + GK Sbjct: 99 RVKWFDKGKGFGFANVFGLAE---DVFVHIEVLRRSGLSDLQPGEAISLR-VMDGKRGKM 154 Query: 66 SAEN 69 + E Sbjct: 155 AMEV 158 >gi|262201217|ref|YP_003272425.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] gi|262084564|gb|ACY20532.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] Length = 155 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ +KG+GF+ E G+DV++ SA+ G+ L GQ V + Sbjct: 19 VPTGKVKWYDAEKGFGFLAQE----DGEDVYVRSSAL-PDGVEGLKPGQRVEFGMA-AGR 72 Query: 62 NGKYSAENLKLVPKSS 77 G + L P S Sbjct: 73 RGPQALSVTVLEPAPS 88 >gi|54022606|ref|YP_116848.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54014114|dbj|BAD55484.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 138 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF++ + G+DV++ SA+ G+ L GQ V + Sbjct: 1 MPTGRVKWYDVEKGFGFLSQD----EGEDVYVRSSAL-PEGVEGLKPGQRVEFGMAAGRR 55 Query: 62 NGKYSAENLKLVP 74 A +LKL+ Sbjct: 56 G--PQALSLKLIE 66 >gi|167847488|ref|ZP_02472996.1| cold-shock domain family protein [Burkholderia pseudomallei B7210] Length = 78 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 +GFITPEG G+D+F H S + G L E Q V ++ V+ G +A N+K + Sbjct: 26 FGFITPEG---GGEDLFAHFSEIRVDGFKTLQENQKVEFE-VKTGPKGLQAA-NIKPL 78 >gi|312193994|ref|YP_004014055.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] gi|311225330|gb|ADP78185.1| cold-shock DNA-binding domain protein [Frankia sp. EuI1c] Length = 131 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ DKG+GF++ + G DVF+H++A+ AG+ L G V + Sbjct: 1 MPTGKVKWYDVDKGFGFLSRD----DGGDVFVHKAAL-PAGVEKLRAGDRVEFGVAAGRK 55 Query: 62 NGKYSAENLKLVPK 75 A +L+++ + Sbjct: 56 G--DQALSLRILAE 67 >gi|148555471|ref|YP_001263053.1| cold-shock DNA-binding protein family protein [Sphingomonas wittichii RW1] gi|148500661|gb|ABQ68915.1| cold-shock DNA-binding protein family [Sphingomonas wittichii RW1] Length = 198 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++KW++ +G+GFI +G DV +H S + G L EG + + V D Sbjct: 36 GAVKWFDATRGFGFIATDGDR---GDVLVHFSVLRDHGRRTLPEGARIACEVVARDRG 90 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46 +KW+N KGYGF+ +G T D+F+H V AGL +L Sbjct: 137 VKWFNRLKGYGFLVRDGET---QDIFIHMETVRRAGLPDL 173 >gi|2739396|gb|AAB94634.1| Y-box protein [Drosophila melanogaster] Length = 359 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 7/69 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA---GLFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI + E DVF+H+SA+A+ + ++ +G++V +D V + Sbjct: 64 TGTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIANNPKKAVRSVGDGEVVEFDVVIGE 120 Query: 61 ANGKYSAEN 69 G +A Sbjct: 121 -KGNEAANV 128 >gi|196007122|ref|XP_002113427.1| hypothetical protein TRIADDRAFT_64023 [Trichoplax adhaerens] gi|190583831|gb|EDV23901.1| hypothetical protein TRIADDRAFT_64023 [Trichoplax adhaerens] Length = 279 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G +KW+N +GYGFI + ++G+DVF+H++A+ + L ++ + ++V +D + + Sbjct: 31 GKVKWFNVKRGYGFIHRD---DTGEDVFVHQTAIQANNPKKYLRSVGDEEVVEFDVL-SG 86 Query: 61 ANGKYSAEN 69 G +A Sbjct: 87 PKGLEAANV 95 >gi|457262|gb|AAA36569.1| nuclease sensitive element binding protein-1 [Homo sapiens] Length = 322 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 60 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 116 Query: 61 ANGKYSAEN 69 G +A Sbjct: 117 -KGAEAANV 124 >gi|238784536|ref|ZP_04628544.1| Cold shock-like protein [Yersinia bercovieri ATCC 43970] gi|238714599|gb|EEQ06603.1| Cold shock-like protein [Yersinia bercovieri ATCC 43970] Length = 65 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +GYGFI+P + G DV++ ++A+A+ +L+EGQ V + ++ +G Sbjct: 1 MGRVKWFNQSEGYGFISPH---DGGLDVYVSKTAIANTKNRSLSEGQDVEFSTYRS-IHG 56 Query: 64 KYSAENL 70 +A+ + Sbjct: 57 PSAADVI 63 >gi|46202227|ref|ZP_00053533.2| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 167 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K+++ +KG+GF+ + E G DVF+H A+ +G+ L GQ V Sbjct: 103 EGVVKFFSAEKGFGFVACD---EGGKDVFVHVKALERSGIKTLESGQRVRVTTTLGLKG- 158 Query: 64 KYSAENLKLV 73 A+ + ++ Sbjct: 159 -PQADTVAII 167 Score = 66.9 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 ++KW+N KG+GF+ P ++ D FLH SA+ AGL + EG + D + Sbjct: 19 TVKWFNASKGFGFVAP---SDGSPDAFLHISALERAGLTQVAEGATLVVDLGAGQRGPQ 74 >gi|312132318|ref|YP_003999657.1| cspc1 [Bifidobacterium longum subsp. longum BBMN68] gi|311773581|gb|ADQ03069.1| CspC1 [Bifidobacterium longum subsp. longum BBMN68] Length = 79 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57 + +G++K++ KG+GFI P+ + G DVF+H + + G L EG V Y Sbjct: 1 MAQGTVKFFLAKKGFGFIQPD---DGGGDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPA 57 Query: 58 QNDANGKYSAENLKLVPKSS 77 + G + + +KL + Sbjct: 58 SSG-KGTQAKDVVKLSSGEA 76 >gi|108801438|ref|YP_641635.1| cold-shock DNA-binding protein family protein [Mycobacterium sp. MCS] gi|108771857|gb|ABG10579.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS] Length = 147 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ +KG+GF++ E G+DV++ SA+ AG+ L GQ V + Sbjct: 12 VPTGRVKWYDAEKGFGFLSQE----DGEDVYVRSSAL-PAGVEGLKAGQRVEFGVA-AGR 65 Query: 62 NGKYS 66 G + Sbjct: 66 RGPQA 70 >gi|255034693|ref|YP_003085314.1| cold-shock DNA-binding domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254947449|gb|ACT92149.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM 18053] Length = 63 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++RG++K++N KG+GFI PE G D+F+H + + + E V+Y+ + Sbjct: 1 MNRGTVKFFNDTKGFGFIAPE---NGGSDIFVHTTGLNDD----IRENDSVSYEVEEGRK 53 Query: 62 NGKYSAENLKLV 73 +A N+ ++ Sbjct: 54 G--LNAVNVTII 63 >gi|195428579|ref|XP_002062350.1| GK16710 [Drosophila willistoni] gi|194158435|gb|EDW73336.1| GK16710 [Drosophila willistoni] Length = 344 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G++V +D V Sbjct: 48 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 104 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 105 E-KGNEAANV 113 >gi|1402757|gb|AAC80247.1| major cold-shock protein [Listeria grayi] Length = 45 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFI+ E G DVF+H SA+ G L EGQ VT+D ++D Sbjct: 1 EKGFGFISRE----DGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEESDR 45 >gi|29477111|gb|AAH50156.1| Y box binding protein 1 [Danio rerio] Length = 309 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97 Query: 61 ANGKYSAEN 69 G +A Sbjct: 98 -KGAEAANV 105 >gi|82802831|gb|ABB92461.1| rcNSEP1 [Pan troglodytes] Length = 319 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 57 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 113 Query: 61 ANGKYSAENLK 71 K A N+ Sbjct: 114 KGAK--AANVT 122 >gi|194131800|gb|ACF33224.1| Y-box protein Lyb3 [Lethenteron japonicum] Length = 171 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 65 GTVKWFNVKNGYGFI---NRNDTKEDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 121 Query: 61 ANGKYSAEN 69 G +A Sbjct: 122 -KGAEAANV 129 >gi|239834349|ref|ZP_04682677.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301] gi|239822412|gb|EEQ93981.1| cold shock protein CSPA [Ochrobactrum intermedium LMG 3301] Length = 69 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 19 ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 I PE + D F+H SAV AG+ L EGQ V+++ V + +GK +A+NL+ + Sbjct: 18 IQPE---DGSPDEFVHISAVERAGMHTLNEGQKVSFELVADRRSGKKAADNLQAL 69 >gi|212709797|ref|ZP_03317925.1| hypothetical protein PROVALCAL_00845 [Providencia alcalifaciens DSM 30120] gi|212687608|gb|EEB47136.1| hypothetical protein PROVALCAL_00845 [Providencia alcalifaciens DSM 30120] Length = 71 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H G +KW++ +GYGFI+P GDD+F+ ++A+ + +L EGQ V + +N Sbjct: 5 LHMGRVKWFDAKEGYGFISP---RNGGDDIFVTTKSLANKKIKSLFEGQNVEFSVTRNSD 61 Query: 62 N 62 Sbjct: 62 G 62 >gi|83815315|ref|YP_445098.1| cold-shock DNA-binding domain-containing protein [Salinibacter ruber DSM 13855] gi|294506974|ref|YP_003571032.1| 'Cold-shock' DNA-binding domain [Salinibacter ruber M8] gi|83756709|gb|ABC44822.1| 'Cold-shock' DNA-binding domain, putative [Salinibacter ruber DSM 13855] gi|294343302|emb|CBH24080.1| 'Cold-shock' DNA-binding domain [Salinibacter ruber M8] Length = 69 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW++P +GYGF+ P+ DDVFLH S V +L EG + ++ + + Sbjct: 1 METGTVKWFSPAEGYGFVEPD---NGEDDVFLHHSEVPDE---DLEEGDRLEFEIEETEK 54 Query: 62 NGKYSAENLKLV 73 +A N++ + Sbjct: 55 G--LNAVNIEAL 64 >gi|325286552|ref|YP_004262342.1| cold-shock DNA-binding domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322006|gb|ADY29471.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM 7489] Length = 77 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 7/68 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K+YN KGYGFIT + E+G D+F+H +++ L EG V Y + Sbjct: 14 LMTGTVKFYNDSKGYGFITND---ETGKDIFVHATSLNGV---ELNEGDKVEY-VEEEGR 66 Query: 62 NGKYSAEN 69 G +A+ Sbjct: 67 KGVVAAQV 74 >gi|238757626|ref|ZP_04618810.1| Cold shock-like protein [Yersinia aldovae ATCC 35236] gi|238795858|ref|ZP_04639371.1| Cold shock-like protein [Yersinia mollaretii ATCC 43969] gi|238704131|gb|EEP96664.1| Cold shock-like protein [Yersinia aldovae ATCC 35236] gi|238720321|gb|EEQ12124.1| Cold shock-like protein [Yersinia mollaretii ATCC 43969] gi|330862904|emb|CBX73040.1| cold shock-like protein cspE [Yersinia enterocolitica W22703] Length = 77 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +GYGFI+P + DV++ ++A+A+ +L+EGQ V + ++ Sbjct: 11 LKMGRVKWFNQSEGYGFISPH---DGSLDVYVSKTAIANTKNKSLSEGQDVEFSTYRS-I 66 Query: 62 NGKYSAENL 70 +G +A+ + Sbjct: 67 HGPSAADVI 75 >gi|254363803|ref|ZP_04979849.1| cold shock-like protein B cspB [Mycobacterium tuberculosis str. Haarlem] gi|134149317|gb|EBA41362.1| cold shock-like protein B cspB [Mycobacterium tuberculosis str. Haarlem] Length = 135 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+PDKG+GF++ E G+DV++ SA+ + + L GQ V + + Sbjct: 1 MPTGKVKWYDPDKGFGFLSQE----GGEDVYVRSSALPTF-VEALKAGQRVEFGIA-SGR 54 Query: 62 NGKYSAENLKLVPK 75 G A +L+L+ Sbjct: 55 RGPQ-ALSLRLIEP 67 >gi|3821923|gb|AAC69703.1| major cold shock protein [Lactobacillus helveticus] Length = 50 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 KG+GFIT DVF+H SA+ + G +L EGQ V+YD Q G +A Sbjct: 1 KGFGFIT----GSDNKDVFVHFSAIKTDGFKSLEEGQKVSYDVEQGG-RGPQAAN 50 >gi|83313007|ref|YP_423271.1| cold shock protein [Magnetospirillum magneticum AMB-1] gi|82947848|dbj|BAE52712.1| Cold shock protein [Magnetospirillum magneticum AMB-1] Length = 200 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K+++ +KG+GF+ + + G DVF+H A+ +G+ L GQ V Sbjct: 136 EGVVKFFSAEKGFGFVACD---QGGKDVFVHVKALERSGIKTLESGQRVRVTTTLGLKG- 191 Query: 64 KYSAENLKLV 73 A+ + ++ Sbjct: 192 -PQADTVAII 200 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 ++KW+N KG+GF+ P ++ D FLH SA+ AGL + EG + D + Sbjct: 52 TVKWFNASKGFGFVAP---SDGSPDAFLHISALERAGLTQVAEGATLVVDLGAGQRGPQ 107 >gi|254495787|ref|ZP_05108699.1| cold shock-like protein [Legionella drancourtii LLAP12] gi|254354944|gb|EET13567.1| cold shock-like protein [Legionella drancourtii LLAP12] Length = 72 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++K +N KGYGFITP+ VF+H S VA AG L E Q ++Y + + Sbjct: 6 GTVKRFNKIKGYGFITPDTGESE---VFVHFSEVAVAGYKELKENQRISYVLREGEKG 60 >gi|9653686|gb|AAB46889.2| TSH receptor suppressor element-binding protein-1 [Rattus sp.] Length = 322 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 Query: 61 ANGKYSAEN 69 G +A Sbjct: 116 -KGAEAANV 123 >gi|123441859|ref|YP_001005842.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088820|emb|CAL11626.1| cold shock-like protein cspE3 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606254|emb|CBY27752.1| cold shock protein CspB [Yersinia enterocolitica subsp. palearctica Y11] Length = 69 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N +GYGFI+P + DV++ ++A+A+ +L+EGQ V + ++ Sbjct: 3 LKMGRVKWFNQSEGYGFISPH---DGSLDVYVSKTAIANTKNKSLSEGQDVEFSTYRS-I 58 Query: 62 NGKYSAENL 70 +G +A+ + Sbjct: 59 HGPSAADVI 67 >gi|54024961|ref|YP_119203.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54016469|dbj|BAD57839.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 122 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ W++ +KG+GFITP+ + + VF+ A+ + G L G V Y + A + Sbjct: 54 GTVAWFDAEKGFGFITPDDRSPA---VFVEFHAIEAVGYRTLVAGGPVVYRAEETKAGPE 110 Query: 65 YSAE 68 A Sbjct: 111 AVAV 114 >gi|212716929|ref|ZP_03325057.1| hypothetical protein BIFCAT_01873 [Bifidobacterium catenulatum DSM 16992] gi|225352748|ref|ZP_03743771.1| hypothetical protein BIFPSEUDO_04378 [Bifidobacterium pseudocatenulatum DSM 20438] gi|212660214|gb|EEB20789.1| hypothetical protein BIFCAT_01873 [Bifidobacterium catenulatum DSM 16992] gi|225156355|gb|EEG69924.1| hypothetical protein BIFPSEUDO_04378 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 129 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++W++ +KGYGFI E G DVFL +A+ G+ L +G V Y V+ Sbjct: 1 MPSGRVRWFDANKGYGFIQ----NEQGADVFLPAAAL-PEGVKTLRKGAKVEYSVVEG-R 54 Query: 62 NGKYS 66 G + Sbjct: 55 RGPQA 59 >gi|147903761|ref|NP_001079367.1| nuclease-sensitive element-binding protein 1 [Xenopus laevis] gi|27370848|gb|AAH41191.1| Ybx1 protein [Xenopus laevis] gi|76779926|gb|AAI06324.1| Ybx1 protein [Xenopus laevis] Length = 303 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 39 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95 Query: 61 ANGKYSAEN 69 G +A Sbjct: 96 -KGAEAANV 103 >gi|149898790|gb|ABR27857.1| predicted RNA-binding protein [Triatoma infestans] Length = 300 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++G+DVF+H+SA+ + ++ +G+ V +D V Sbjct: 56 TGTVKWFNVKSGYGFI---NRKDTGEDVFVHQSAIIKNNPKKAVRSVGDGETVEFDVVAG 112 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 113 E-KGNEAANV 121 >gi|140245|sp|P21573|YBOX1_XENLA RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1 gi|214155|gb|AAA49715.1| DNA-binding protein [Xenopus laevis] Length = 303 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 39 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95 Query: 61 ANGKYSAEN 69 G +A Sbjct: 96 -KGAEAANV 103 >gi|229488838|ref|ZP_04382704.1| cold-shock DNA-binding domain protein [Rhodococcus erythropolis SK121] gi|229324342|gb|EEN90097.1| cold-shock DNA-binding domain protein [Rhodococcus erythropolis SK121] Length = 140 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ +KG+GF++ E G+DV++ SA+ G+ L GQ V + Sbjct: 4 VPTGKVKWYDVEKGFGFLSQE----EGEDVYVRASAL-PEGVEGLKAGQRVEFGMAAGRR 58 Query: 62 NGKYSAENLKLVPKS 76 A +LK++ + Sbjct: 59 G--PQALSLKVLEPA 71 >gi|332842519|ref|XP_001134851.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan troglodytes] Length = 319 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 57 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 113 Query: 61 ANGKYSAENLK 71 K A N+ Sbjct: 114 KGAK--AANVT 122 >gi|226474422|emb|CAX71697.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 203 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|187607756|ref|NP_001119929.1| nuclease-sensitive element-binding protein 1 isoform 1 [Danio rerio] gi|118763928|gb|AAI28886.1| Y box binding protein 1 [Danio rerio] gi|169159049|emb|CAQ15227.1| Y box binding protein 1 [Danio rerio] Length = 309 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97 Query: 61 ANGKYSAEN 69 G +A Sbjct: 98 -KGAEAANV 105 >gi|340419|gb|AAA61308.1| Y box binding protein-1 [Homo sapiens] Length = 317 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 Query: 61 ANGKYSAEN 69 G+ +A Sbjct: 118 -KGEEAANV 125 >gi|18859137|ref|NP_571695.1| nuclease-sensitive element-binding protein 1 isoform 2 [Danio rerio] gi|3695368|gb|AAC62774.1| zfY1 [Danio rerio] gi|169642049|gb|AAI60650.1| Y box binding protein 1 [Danio rerio] Length = 310 Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97 Query: 61 ANGKYSAEN 69 G +A Sbjct: 98 -KGAEAANV 105 >gi|325287735|ref|YP_004263525.1| cold-shock DNA-binding domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323189|gb|ADY30654.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM 7489] Length = 63 Score = 72.7 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N +KG+GFIT EGS G D+F+H S + + EG V Y+ + Sbjct: 1 MSKGTVKFFNDEKGFGFITEEGS---GKDIFVHISGLVDE----IREGDEVEYEVTEGKK 53 Query: 62 NGKYSAENLKLV 73 +A N++++ Sbjct: 54 G--LNAANVRVL 63 >gi|293345053|ref|XP_002725927.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 3 [Rattus norvegicus] gi|293356924|ref|XP_002729026.1| PREDICTED: lin-28 homolog B isoform 2 [Rattus norvegicus] gi|149046920|gb|EDL99668.1| rCG58531, isoform CRA_b [Rattus norvegicus] Length = 316 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EG+ DVF+H+S + G +L EG+ V + + ++ Sbjct: 74 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 133 Query: 60 DAN 62 Sbjct: 134 PKG 136 >gi|73909033|gb|AAI03638.1| Ybx1 protein [Rattus norvegicus] Length = 326 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 Query: 61 ANGKYSAEN 69 G +A Sbjct: 116 -KGAEAANV 123 >gi|297467632|ref|XP_612469.5| PREDICTED: lin-28 homolog B [Bos taurus] Length = 254 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 38 TGHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97 Query: 60 DAN 62 Sbjct: 98 SKG 100 >gi|3892588|emb|CAA76696.1| cold shock protein C [Lactococcus lactis subsp. cremoris MG1363] Length = 66 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G I W+N DKGYGFI + DVF + ++ EGQ VT+D + + Sbjct: 1 MNKGKINWFNADKGYGFI----MADDMQDVFAYLLSIQGNDFKKYDEGQKVTFDI-KMTS 55 Query: 62 NGKYSAEN 69 G+Y++ Sbjct: 56 RGRYASNV 63 >gi|300676881|gb|ADK26753.1| lin-28 homolog B [Zonotrichia albicollis] Length = 245 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 26 TGHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 85 Query: 60 DAN 62 Sbjct: 86 SKG 88 >gi|119357559|ref|YP_912203.1| cold-shock DNA-binding protein family protein [Chlorobium phaeobacteroides DSM 266] gi|119354908|gb|ABL65779.1| cold-shock DNA-binding protein family [Chlorobium phaeobacteroides DSM 266] Length = 85 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 + R +KW++ KGYGFI + E G+D+F+H SA+ L + V ++ + Sbjct: 1 MARSKVKWFDGKKGYGFIV---NPEGGEDIFVHFSAIICEQSFKVLNQDADVDFELEKTQ 57 Query: 61 ANGKYSAENLKLVP 74 + A+N++ VP Sbjct: 58 KG--FQAKNVREVP 69 >gi|303289687|ref|XP_003064131.1| highly cold-shock DNA binding protein [Micromonas pusilla CCMP1545] gi|226454447|gb|EEH51753.1| highly cold-shock DNA binding protein [Micromonas pusilla CCMP1545] Length = 325 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 5/60 (8%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 D+G+GFITP+G G+DVF H SA+ + L+EG V YD +D GK AEN+ Sbjct: 83 NDRGFGFITPDG---GGEDVFCHFSAIKDGNM--LSEGSRVDYDESFDDRKGKPRAENVT 137 >gi|222624666|gb|EEE58798.1| hypothetical protein OsJ_10341 [Oryza sativa Japonica Group] Length = 233 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K ++ G+GFITP+ + G+D+F+H+S++ +L + ++ + +G Sbjct: 7 KGTVKGFDATNGFGFITPD---DDGEDLFIHQSSLKFDDYRSLNDSDVIELSVG-SGNDG 62 Query: 64 KYSAENLKLV 73 + A ++ + Sbjct: 63 RNKAVDVTAL 72 >gi|224080514|ref|XP_002194901.1| PREDICTED: Y box binding protein 1 [Taeniopygia guttata] Length = 324 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 58 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114 Query: 61 ANGKYSAEN 69 G +A Sbjct: 115 -KGAEAANV 122 >gi|329764741|ref|ZP_08256336.1| cold-shock DNA-binding domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138791|gb|EGG43032.1| cold-shock DNA-binding domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 63 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 10/70 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI E SGDD+F+H+S V G + EG V ++ Q Sbjct: 1 MEQGTVKWFNRTKGFGFIERE----SGDDLFVHKSDV--DGF--INEGDKVEFEVGQGQK 52 Query: 62 NGKYSAENLK 71 +A+ +K Sbjct: 53 G--PAAQKVK 60 >gi|257069730|ref|YP_003155985.1| cold-shock DNA-binding protein family [Brachybacterium faecium DSM 4810] gi|256560548|gb|ACU86395.1| cold-shock DNA-binding protein family [Brachybacterium faecium DSM 4810] Length = 128 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG +K+Y+ +KG+GFI + E G V++H + + G+ L G V +D V Sbjct: 1 MPRGKVKFYDAEKGFGFILDD---EDGQSVYVHATNL-PDGVTTLRPGTRVDFDMVDGRR 56 Query: 62 NGKYSAENLKLVPKS 76 + A L+L+ + Sbjct: 57 GPQVLA--LQLLEPA 69 >gi|988283|gb|AAA75476.1| mYB-1b [Mus musculus] Length = 322 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 Query: 61 ANGKYSAEN 69 G +A Sbjct: 116 -KGAEAANV 123 >gi|296484122|gb|DAA26237.1| lin-28 homolog B-like [Bos taurus] Length = 255 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 38 TGHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97 Query: 60 DAN 62 Sbjct: 98 SKG 100 >gi|84498519|ref|ZP_00997289.1| cold shock protein [Janibacter sp. HTCC2649] gi|84381262|gb|EAP97146.1| cold shock protein [Janibacter sp. HTCC2649] Length = 134 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K+Y+ +KG+GF++ + E G DVF+ SA+ G+ L G + + V+ Sbjct: 1 MPTGKVKFYDSEKGFGFVSTDDPAEGG-DVFVPSSAL-PEGVTALKNGARIEFGIVEGRR 58 Query: 62 NGKYSAENLKLVPKSSN 78 A +++L+ +++ Sbjct: 59 G--AQALSVRLLEPAAS 73 >gi|62751871|ref|NP_001015855.1| cold shock domain protein A [Xenopus (Silurana) tropicalis] gi|59861901|gb|AAH90361.1| cold shock domain protein A [Xenopus (Silurana) tropicalis] Length = 248 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D V Sbjct: 37 QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAG 93 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 94 E-KGAEAANV 102 >gi|297478551|ref|XP_002707884.1| PREDICTED: lin-28 homolog B (C. elegans)-like [Bos taurus] Length = 254 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 38 TGHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97 Query: 60 DAN 62 Sbjct: 98 SKG 100 >gi|300676769|gb|ADK26645.1| lin-28 homolog B [Zonotrichia albicollis] Length = 245 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 26 TGHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 85 Query: 60 DAN 62 Sbjct: 86 SKG 88 >gi|301347534|ref|ZP_07228275.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB056] Length = 60 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 N KG+GFI T+ G DVF H S + + G L EGQ V + Q A N+ Sbjct: 1 NETKGFGFIQ----TDEGKDVFAHFSEIQTQGFKVLLEGQRVQFTVTQGKKG--PQASNI 54 Query: 71 KLV 73 +V Sbjct: 55 TIV 57 >gi|1402759|gb|AAC80246.1| major cold-shock protein [Listeria innocua] Length = 45 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFI E +GDDVF+H SA+ G +L EGQ VT+D + Sbjct: 1 EKGFGFIERE----NGDDVFVHFSAIQGDGFKSLDEGQAVTFDVEEGQR 45 >gi|130488167|ref|NP_001076254.1| nuclease-sensitive element-binding protein 1 [Oryctolagus cuniculus] gi|75069491|sp|Q28618|YBOX1_RABIT RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=CCAAT-binding transcription factor I subunit A; Short=CBF-A; AltName: Full=Enhancer factor I subunit A; Short=EFI-A; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1; AltName: Full=p50 gi|608518|gb|AAA66069.1| p50 [Oryctolagus cuniculus] Length = 324 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 Query: 61 ANGKYSAEN 69 G +A Sbjct: 118 -KGAEAANV 125 >gi|195173115|ref|XP_002027340.1| GL15684 [Drosophila persimilis] gi|198465413|ref|XP_002134972.1| GA23502 [Drosophila pseudoobscura pseudoobscura] gi|194113183|gb|EDW35226.1| GL15684 [Drosophila persimilis] gi|198150149|gb|EDY73599.1| GA23502 [Drosophila pseudoobscura pseudoobscura] Length = 335 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G++V +D V Sbjct: 50 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 106 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 107 E-KGNEAANV 115 >gi|317123896|ref|YP_004098008.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] gi|315587984|gb|ADU47281.1| cold-shock DNA-binding protein family [Intrasporangium calvum DSM 43043] Length = 131 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++++ DKG+GFI + G DVFLH +A+ G+ L +G V + V+ Sbjct: 1 MPTGKVRFFDADKGFGFIA----EDDGADVFLHANAL-PEGVTTLKKGTRVEFGIVEGRK 55 Query: 62 NGKYSAENLKLVPKS 76 A ++++ + Sbjct: 56 G--AQALQVRVLDPA 68 >gi|21673445|ref|NP_661510.1| cold shock-like protein CspG [Chlorobium tepidum TLS] gi|21646547|gb|AAM71852.1| cold shock-like protein CspG [Chlorobium tepidum TLS] Length = 97 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 + + +KW++ KGYGFI + + G+D+F+H S++ S L + V YD + Sbjct: 1 MAKSKVKWFDGKKGYGFI---LNPDGGEDIFVHFSSIISDQSFKVLNQDADVEYDLDKTQ 57 Query: 61 ANGKYSAENLKLVPKSS 77 A+N++ + S+ Sbjct: 58 KG--LQAKNVRELSVSA 72 >gi|77736623|ref|NP_001029990.1| protein lin-28 homolog B [Gallus gallus] gi|116248186|sp|Q45KJ4|LN28B_CHICK RecName: Full=Protein lin-28 homolog B; Short=Lin-28B gi|71724932|gb|AAZ38896.1| LIN28B [Gallus gallus] Length = 250 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + Y ++ Sbjct: 32 GHCKWFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTYKKSS 91 Query: 61 AN 62 Sbjct: 92 KG 93 >gi|61367907|gb|AAX43065.1| nuclease sensitive element binding protein 1 [synthetic construct] gi|61369330|gb|AAX43318.1| nuclease sensitive element binding protein 1 [synthetic construct] Length = 325 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 Query: 61 ANGKYSAEN 69 G +A Sbjct: 118 -KGAEAANV 125 >gi|158312011|ref|YP_001504519.1| cold-shock DNA-binding domain-containing protein [Frankia sp. EAN1pec] gi|158107416|gb|ABW09613.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec] Length = 132 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ D+G+GF++ + + DVF+H++A+ +G+ L G V + Sbjct: 1 MPTGKVKWFDVDRGFGFLSRD---DGDADVFVHKAAL-PSGVDRLKPGDRVEFGIAAGRK 56 Query: 62 NGKYSAENLKLV 73 A +L+++ Sbjct: 57 G--DQALSLRIL 66 >gi|326801255|ref|YP_004319074.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] gi|326552019|gb|ADZ80404.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] Length = 65 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KG+GFI E G D+F+H V G+ + + V ++ Sbjct: 1 MKTGKVKWFNAQKGFGFIIQE----DGTDIFVHFKDVKG-GIDAIKDNDRVEFEVADGRK 55 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 56 G--QQAVNVKKI 65 >gi|296207663|ref|XP_002750741.1| PREDICTED: nuclease-sensitive element-binding protein 1-like [Callithrix jacchus] Length = 323 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 60 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 116 Query: 61 ANGKYSAEN 69 G +A Sbjct: 117 -KGAEAANV 124 >gi|149052644|gb|EDM04461.1| rCG63497 [Rattus norvegicus] Length = 322 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI S ++ +DVF+H++A+ L ++ +G+ V ++ V+ + Sbjct: 59 GTVKWFNVRNGYGFI---NSNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFEVVEGE 115 Query: 61 ANGKYSAEN 69 G +A Sbjct: 116 -KGAEAANV 123 >gi|149035443|gb|EDL90124.1| rCG50488, isoform CRA_a [Rattus norvegicus] Length = 305 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 42 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 98 Query: 61 ANGKYSAEN 69 G +A Sbjct: 99 -KGAEAANV 106 >gi|121934029|gb|AAI27713.1| LIN28B protein [Homo sapiens] gi|121934102|gb|AAI27714.1| LIN28B protein [Homo sapiens] gi|146424334|gb|AAI41961.1| LIN28B protein [Homo sapiens] gi|152061020|gb|AAI50539.1| LIN28B protein [Homo sapiens] gi|152061071|gb|AAI50538.1| LIN28B protein [Homo sapiens] Length = 227 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 8 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 67 Query: 60 DAN 62 Sbjct: 68 SKG 70 >gi|116627692|ref|YP_820311.1| cold shock protein A [Streptococcus thermophilus LMD-9] gi|116100969|gb|ABJ66115.1| cold-shock DNA-binding protein family [Streptococcus thermophilus LMD-9] gi|312278224|gb|ADQ62881.1| Cold shock-like protein cspA [Streptococcus thermophilus ND03] Length = 66 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G+I W+N DKGYGFI + DVF + ++ EGQ VT+D Sbjct: 1 MNKGTINWFNADKGYGFI----MADDMQDVFAYLISIQGNDFKKYDEGQKVTFDIKMTSR 56 Query: 62 N 62 Sbjct: 57 G 57 >gi|332703395|ref|ZP_08423483.1| cold-shock DNA-binding domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332553544|gb|EGJ50588.1| cold-shock DNA-binding domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 99 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG + W++ +GYGFI E+G+DVF+ + G L +G+ VT+ + G Sbjct: 23 RGVVVWFHERRGYGFI----RDETGEDVFVSWPDILRPGFKTLAQGEQVTFTL-KPGEGG 77 Query: 64 KYSAENLKLVPKS 76 + +AE + L P + Sbjct: 78 RKAAEVVPLQPSA 90 >gi|325674581|ref|ZP_08154268.1| cold-shock domain family protein [Rhodococcus equi ATCC 33707] gi|325554167|gb|EGD23842.1| cold-shock domain family protein [Rhodococcus equi ATCC 33707] Length = 140 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ +KG+GF++ E G+DV++ SA+ + L GQ V +D Sbjct: 4 VPTGKVKWYDVEKGFGFLSQE----EGEDVYVRASALPGD-VDGLKAGQRVEFDMAAGRR 58 Query: 62 NGKYSAENLKLVPKS 76 A ++L+ + Sbjct: 59 G--PQALKVQLLEPA 71 >gi|45383329|ref|NP_989745.1| nuclease-sensitive element-binding protein 1 [Gallus gallus] gi|516701|dbj|BAA05380.1| unnamed protein product [Gallus gallus] Length = 326 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 Query: 61 ANGKYSAEN 69 G +A Sbjct: 116 -KGAEAANV 123 >gi|3121929|sp|Q52287|CSPA_PHOPO RecName: Full=Major cold shock protein gi|1402767|gb|AAC80250.1| major cold-shock protein [Photobacterium phosphoreum] Length = 46 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFIT + G DVF+H A+AS G L EGQ V+++ Q Sbjct: 1 EKGFGFITQD---NGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQK 46 >gi|148673097|gb|EDL05044.1| lin-28 homolog B (C. elegans), isoform CRA_b [Mus musculus] Length = 281 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EG+ DVF+H+S + G +L EG+ V + + ++ Sbjct: 39 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 98 Query: 60 DAN 62 Sbjct: 99 PKG 101 >gi|72170454|ref|XP_792032.1| PREDICTED: similar to ENSANGP00000011455 [Strongylocentrotus purpuratus] gi|115937083|ref|XP_001186027.1| PREDICTED: similar to ENSANGP00000011455 [Strongylocentrotus purpuratus] Length = 234 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++RG KW++ K YGF+TP+ + DVF+H+ + G +L + V Y + Q Sbjct: 62 LYRGKCKWFSLAKCYGFLTPD---DGSGDVFVHQRVIKMVGYRSLDTNEEVEYKF-QFSE 117 Query: 62 NGKYS 66 G+ + Sbjct: 118 KGREA 122 >gi|27807361|ref|NP_777240.1| nuclease-sensitive element-binding protein 1 [Bos taurus] gi|34098946|ref|NP_004550.2| nuclease-sensitive element-binding protein 1 [Homo sapiens] gi|332248504|ref|XP_003273402.1| PREDICTED: nuclease-sensitive element-binding protein 1 [Nomascus leucogenys] gi|332808655|ref|XP_525693.3| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan troglodytes] gi|54040030|sp|P67808|YBOX1_BOVIN RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=CCAAT-binding transcription factor I subunit A; Short=CBF-A; AltName: Full=DNA-binding protein B; Short=DBPB; AltName: Full=Enhancer factor I subunit A; Short=EFI-A; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1 gi|54040031|sp|P67809|YBOX1_HUMAN RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=CCAAT-binding transcription factor I subunit A; Short=CBF-A; AltName: Full=DNA-binding protein B; Short=DBPB; AltName: Full=Enhancer factor I subunit A; Short=EFI-A; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1 gi|162983|gb|AAA30497.1| transcription factor EF1(A) [Bos taurus] gi|454152|gb|AAA20871.1| similar to dbpB protein [Homo sapiens] gi|12803207|gb|AAH02411.1| Y box binding protein 1 [Homo sapiens] gi|14714588|gb|AAH10430.1| Y box binding protein 1 [Homo sapiens] gi|15929560|gb|AAH15208.1| Y box binding protein 1 [Homo sapiens] gi|23468206|gb|AAH38384.1| Y box binding protein 1 [Homo sapiens] gi|41350935|gb|AAH65571.1| Y box binding protein 1 [Homo sapiens] gi|47125298|gb|AAH70084.1| Y box binding protein 1 [Homo sapiens] gi|47940506|gb|AAH71708.1| Y box binding protein 1 [Homo sapiens] gi|58477789|gb|AAH90038.1| Y box binding protein 1 [Homo sapiens] gi|61359169|gb|AAX41678.1| nuclease sensitive element binding protein 1 [synthetic construct] gi|68534659|gb|AAH98435.1| Y box binding protein 1 [Homo sapiens] gi|76779237|gb|AAI06046.1| Y box binding protein 1 [Homo sapiens] gi|86821283|gb|AAI05364.1| Y box binding protein 1 [Bos taurus] gi|119627554|gb|EAX07149.1| Y box binding protein 1, isoform CRA_b [Homo sapiens] gi|123981412|gb|ABM82535.1| Y box binding protein 1 [synthetic construct] gi|123996253|gb|ABM85728.1| Y box binding protein 1 [synthetic construct] gi|168277900|dbj|BAG10928.1| nuclease sensitive element-binding protein 1 [synthetic construct] gi|296488844|gb|DAA30957.1| nuclease-sensitive element-binding protein 1 [Bos taurus] Length = 324 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 Query: 61 ANGKYSAEN 69 G +A Sbjct: 118 -KGAEAANV 125 >gi|148379732|ref|YP_001254273.1| cold shock protein [Clostridium botulinum A str. ATCC 3502] gi|153933933|ref|YP_001384029.1| cold shock protein [Clostridium botulinum A str. ATCC 19397] gi|153936177|ref|YP_001387571.1| cold shock protein [Clostridium botulinum A str. Hall] gi|148289216|emb|CAL83311.1| cold shock protein [Clostridium botulinum A str. ATCC 3502] gi|152929977|gb|ABS35477.1| cold shock protein [Clostridium botulinum A str. ATCC 19397] gi|152932091|gb|ABS37590.1| cold shock protein [Clostridium botulinum A str. Hall] Length = 69 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQND 60 +H G++KW++ ++GYGFI +G DV++H + L +L EG+ V +D V+ + Sbjct: 3 MHTGTVKWFDNERGYGFIA----GNNGKDVYVHSMQIKEKTLNKDLHEGEEVLFDIVEKE 58 Query: 61 ANGKYSAENLKLV 73 A N++ + Sbjct: 59 KG--PIAINVQKL 69 >gi|256826183|ref|YP_003150143.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM 20547] gi|256689576|gb|ACV07378.1| cold-shock DNA-binding protein family [Kytococcus sedentarius DSM 20547] Length = 133 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 9/79 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ DKG+GF+ ++G DVFL SA+ AG+ L G + Y VQ Sbjct: 1 MPTGKVKWFDADKGFGFV----GDDAGSDVFLRASAL-PAGVTTLRPGTRLEYSIVQGRK 55 Query: 62 NGKYSAENLKLV--PKSSN 78 A +++++ P S Sbjct: 56 G--DQAMHVEVLDAPPSVQ 72 >gi|126310761|ref|XP_001378246.1| PREDICTED: similar to lin-28 homolog B (C. elegans), [Monodelphis domestica] Length = 266 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 47 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 106 Query: 60 DAN 62 Sbjct: 107 SKG 109 >gi|226474424|emb|CAX71698.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 203 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|195020347|ref|XP_001985176.1| GH16919 [Drosophila grimshawi] gi|193898658|gb|EDV97524.1| GH16919 [Drosophila grimshawi] Length = 345 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G+LV +D V Sbjct: 49 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIG 105 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 106 E-KGNEAANV 114 >gi|203398|gb|AAA40906.1| putative [Rattus norvegicus] Length = 322 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 Query: 61 ANGKYSAEN 69 G +A Sbjct: 116 -KGAEAANV 123 >gi|988281|gb|AAA75475.1| mYB-1a [Mus musculus] Length = 322 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 Query: 61 ANGKYSAEN 69 G +A Sbjct: 116 -KGAEAANV 123 >gi|73973951|ref|XP_539064.2| PREDICTED: similar to RNA-binding protein LIN-28 [Canis familiaris] Length = 251 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 30 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 89 Query: 60 DAN 62 Sbjct: 90 SKG 92 >gi|242008099|ref|XP_002424850.1| Nuclease sensitive element-binding protein, putative [Pediculus humanus corporis] gi|212508400|gb|EEB12112.1| Nuclease sensitive element-binding protein, putative [Pediculus humanus corporis] Length = 288 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI + + E DVF+H++A+ + ++ +G++V +D V Sbjct: 26 TGTVKWFNVKSGYGFINRDDTKE---DVFVHQTAIVKNNPKKFVRSVGDGEVVEFDVVVG 82 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 83 E-KGNEAANV 91 >gi|150017640|ref|YP_001309894.1| cold-shock DNA-binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904105|gb|ABR34938.1| putative cold-shock DNA-binding domain protein [Clostridium beijerinckii NCIMB 8052] Length = 69 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62 G +KW++ ++GYGFI S + GDDVF+H S + G +L E + VT+D ++ Sbjct: 5 TGVVKWFDTERGYGFI----SCDKGDDVFVHHSQIKDKGPDKDLHEDESVTFDI-ESGEK 59 Query: 63 GKYSAENLKL 72 G + KL Sbjct: 60 GPMATNVQKL 69 >gi|319442530|ref|ZP_07991686.1| putative cold shock protein [Corynebacterium variabile DSM 44702] Length = 129 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ DKG+GF+ S DDV + RSA+ G+ L GQ V YD Sbjct: 1 MPTGKVKWFDADKGFGFV----SNPGYDDVHVGRSAL-PEGVTELVPGQRVEYDVATGLR 55 Query: 62 NGKYSAENLKLV 73 A + ++ Sbjct: 56 GKAPEALRVTVL 67 >gi|255038900|ref|YP_003089521.1| cold-shock DNA-binding domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951656|gb|ACT96356.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM 18053] Length = 63 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++RG++K++N KG+GFI PE G DVF+H + + + E V YD + Sbjct: 1 MNRGTVKFFNDTKGFGFIAPEH---GGADVFVHTTGLNDD----IRENDSVYYDVEEGRK 53 Query: 62 NGKYSAENLKLV 73 +A N+ ++ Sbjct: 54 G--MNAVNVTII 63 >gi|312886814|ref|ZP_07746420.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] gi|311300641|gb|EFQ77704.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] Length = 65 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW+N KGYGFI T+ G D+F+H V G+ + + V Y+ + Sbjct: 1 MKTGKVKWFNTQKGYGFIV----TDDGKDLFVHFKDVQG-GVNAIKDNDNVEYEVEEGRK 55 Query: 62 NGKYSAENLKLV 73 A N+K + Sbjct: 56 G--LQAVNVKKI 65 >gi|29437175|gb|AAH49977.1| Y box protein 1 [Mus musculus] Length = 322 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 Query: 61 ANGKYSAEN 69 G +A Sbjct: 116 -KGAEAANV 123 >gi|256089134|ref|XP_002580671.1| Y box binding protein [Schistosoma mansoni] gi|238666270|emb|CAZ36910.1| Y box binding protein, putative [Schistosoma mansoni] Length = 167 Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|2970679|gb|AAC06034.1| Y box protein [Drosophila silvestris] Length = 342 Score = 71.9 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G+LV +D V Sbjct: 49 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIG 105 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 106 E-KGNEAANV 114 >gi|92373398|ref|NP_113751.3| nuclease-sensitive element-binding protein 1 [Rattus norvegicus] gi|113205059|ref|NP_035862.2| nuclease-sensitive element-binding protein 1 [Mus musculus] gi|148230224|ref|NP_001091240.1| Y box binding protein 1 [Xenopus laevis] gi|51704186|sp|P62961|YBOX1_RAT RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=CCAAT-binding transcription factor I subunit A; Short=CBF-A; AltName: Full=DNA-binding protein B; Short=DBPB; AltName: Full=Enhancer factor I subunit A; Short=EFI-A; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1 gi|51704189|sp|P62960|YBOX1_MOUSE RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=CCAAT-binding transcription factor I subunit A; Short=CBF-A; AltName: Full=DNA-binding protein B; Short=DBPB; AltName: Full=Enhancer factor I subunit A; Short=EFI-A; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1 gi|202435|gb|AAA40577.1| Y-box binding protein 1/DNA binding protein B [Mus musculus] gi|220895|dbj|BAA02569.1| DNA binding protein B [Rattus sp.] gi|15488612|gb|AAH13450.1| Y box protein 1 [Mus musculus] gi|15488999|gb|AAH13620.1| Y box protein 1 [Mus musculus] gi|20987294|gb|AAH29747.1| Y box protein 1 [Mus musculus] gi|21594391|gb|AAH31472.1| Y box protein 1 [Mus musculus] gi|38197295|gb|AAH61634.1| Y box protein 1 [Mus musculus] gi|47938951|gb|AAH72486.1| Y box binding protein 1 [Rattus norvegicus] gi|68533639|gb|AAH98672.1| Y box binding protein 1 [Rattus norvegicus] gi|74178193|dbj|BAE29883.1| unnamed protein product [Mus musculus] gi|76779878|gb|AAI06144.1| Y box protein 1 [Mus musculus] gi|120577450|gb|AAI30161.1| LOC100037035 protein [Xenopus laevis] gi|123227480|emb|CAM27834.1| Y box protein 1 [Mus musculus] gi|123228022|emb|CAM22937.1| Y box protein 1 [Mus musculus] gi|149035444|gb|EDL90125.1| rCG50488, isoform CRA_b [Rattus norvegicus] Length = 322 Score = 71.9 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 Query: 61 ANGKYSAEN 69 G +A Sbjct: 116 -KGAEAANV 123 >gi|148231227|ref|NP_001080330.1| B box-binding protein [Xenopus laevis] gi|140247|sp|Q00436|YB3_XENLA RecName: Full=B box-binding protein; AltName: Full=Protein YB3 gi|65271|emb|CAA42778.1| YB3 [Xenopus laevis] Length = 305 Score = 71.9 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 39 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95 Query: 61 ANGKYSAEN 69 G +A Sbjct: 96 -KGAEAANV 103 >gi|312138422|ref|YP_004005758.1| cold shock protein [Rhodococcus equi 103S] gi|311887761|emb|CBH47073.1| cold shock protein [Rhodococcus equi 103S] Length = 147 Score = 71.9 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ +KG+GF++ E G+DV++ SA+ + L GQ V +D Sbjct: 11 VPTGKVKWYDVEKGFGFLSQE----EGEDVYVRASALPGD-VDGLKAGQRVEFDMAAGRR 65 Query: 62 NGKYSAENLKLVPKS 76 A ++L+ + Sbjct: 66 G--PQALKVQLLEPA 78 >gi|291333272|gb|ADD92980.1| cold shock protein [uncultured archaeon MedDCM-OCT-S04-C163] Length = 63 Score = 71.9 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 10/73 (13%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI E GDD+F+H + V + +G V ++ + Sbjct: 1 MPQGTVKWFNQVKGFGFIEQE----GGDDLFVHITQVEGE----INDGDTVEFEIGEGPK 52 Query: 62 NGKYSAENLKLVP 74 +A N+ V Sbjct: 53 G--PNAINVSKVE 63 >gi|195589720|ref|XP_002084597.1| GD12750 [Drosophila simulans] gi|194196606|gb|EDX10182.1| GD12750 [Drosophila simulans] Length = 352 Score = 71.9 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI + E DVF+H+SA+A + ++ +G++V +D V Sbjct: 63 TGTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 119 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 120 E-KGNEAANV 128 >gi|148645032|gb|ABR01046.1| Csp [uncultured Geobacter sp.] Length = 56 Score = 71.9 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 +N KG+GF+ E +GDDVF H SA+ G +L EG V ++ + G +A Sbjct: 1 FNDGKGFGFLEQE----NGDDVFCHFSAITGDGFKSLAEGDKVKFEVTKG-PKGLQAANV 55 >gi|14270385|emb|CAC39432.1| cold-shock domain protein [Takifugu rubripes] Length = 263 Score = 71.9 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 24 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 80 Query: 61 ANGKYSAEN 69 G +A Sbjct: 81 -KGAEAANV 88 >gi|322806010|emb|CBZ03577.1| cold shock protein CspD [Clostridium botulinum H04402 065] Length = 69 Score = 71.9 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60 +H G++KW++ ++GYGFI S +G DV++H + +L EG+ V +D V+ + Sbjct: 3 MHTGTVKWFDNERGYGFI----SGNNGKDVYVHSMQIKEKTHNKDLHEGEEVLFDIVEKE 58 Query: 61 ANGKYSAENLKLV 73 A N++ + Sbjct: 59 RG--PIAINVQKL 69 >gi|331243621|ref|XP_003334453.1| hypothetical protein PGTG_15882 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309313443|gb|EFP90034.1| hypothetical protein PGTG_15882 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 341 Score = 71.9 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAG-LFNLTEGQLVTYDYVQN 59 +G K++N KG+GFI + E G +VF+H +++ S G +L E V Y V Sbjct: 46 RRKGVCKFFNSQKGFGFINDDHPEELGNQEVFVHYTSIESKGNFRSLAE---VEY-VVAP 101 Query: 60 DANGKYSAEN 69 G + E Sbjct: 102 GQKGFQATEV 111 >gi|256089138|ref|XP_002580673.1| Y box binding protein [Schistosoma mansoni] gi|238666272|emb|CAZ36912.1| Y box binding protein, putative [Schistosoma mansoni] Length = 231 Score = 71.9 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|199821|gb|AAA63390.1| Y box transcription factor [Mus musculus] Length = 322 Score = 71.9 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 Query: 61 ANGKYSAEN 69 G +A Sbjct: 116 -KGAEAANV 123 >gi|332838569|ref|XP_003313542.1| PREDICTED: DNA-binding protein A isoform 1 [Pan troglodytes] Length = 305 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 95 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151 Query: 61 ANGKYSAEN 69 G +A Sbjct: 152 -KGAEAANV 159 >gi|224586884|ref|NP_001138898.1| DNA-binding protein A isoform b [Homo sapiens] gi|16198465|gb|AAH15913.1| CSDA protein [Homo sapiens] gi|119616609|gb|EAW96203.1| cold shock domain protein A, isoform CRA_b [Homo sapiens] gi|119616610|gb|EAW96204.1| cold shock domain protein A, isoform CRA_b [Homo sapiens] Length = 303 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 93 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 149 Query: 61 ANGKYSAEN 69 G +A Sbjct: 150 -KGAEAANV 157 >gi|149478389|ref|XP_001515006.1| PREDICTED: similar to AMP deaminase 1 (Myoadenylate deaminase) (AMP deaminase isoform M) [Ornithorhynchus anatinus] Length = 316 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 53 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 109 Query: 61 ANGKYSAEN 69 G +A Sbjct: 110 -KGAEAANV 117 >gi|203999|gb|AAA41108.1| enhancer factor-1-alpha [Rattus norvegicus] Length = 322 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115 Query: 61 ANGKYSAEN 69 G +A Sbjct: 116 -KGAEAANV 123 >gi|47214045|emb|CAG00703.1| unnamed protein product [Tetraodon nigroviridis] Length = 134 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+LV +D ++ Sbjct: 9 QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGELVEFDVIEA 65 Query: 60 DANGKYSAEN 69 A G +A Sbjct: 66 -AKGSEAANV 74 >gi|255036777|ref|YP_003087398.1| cold-shock DNA-binding domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254949533|gb|ACT94233.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM 18053] Length = 63 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G +K++N KG+GFI+PE E GDD+F+H S + + + E V+Y+ V+N Sbjct: 1 MNKGKVKFFNETKGFGFISPE---EGGDDIFVHVSGL----IDEIRENDSVSYE-VENGR 52 Query: 62 NGKYSAENLKLV 73 G +A N+ ++ Sbjct: 53 KG-LNAVNVSVL 63 >gi|24663131|ref|NP_524033.2| ypsilon schachtel [Drosophila melanogaster] gi|16769538|gb|AAL28988.1| LD37574p [Drosophila melanogaster] gi|23096153|gb|AAF49961.3| ypsilon schachtel [Drosophila melanogaster] Length = 352 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI + E DVF+H+SA+A + ++ +G++V +D V Sbjct: 63 TGTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 119 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 120 E-KGNEAANV 128 >gi|116283293|gb|AAH18393.1| YBX1 protein [Homo sapiens] Length = 267 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 Query: 61 ANGKYSAEN 69 G +A Sbjct: 118 -KGAEAANV 125 >gi|33875177|gb|AAH00064.1| YBX1 protein [Homo sapiens] gi|47939143|gb|AAH72014.1| YBX1 protein [Homo sapiens] Length = 266 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 Query: 61 ANGKYSAEN 69 G +A Sbjct: 118 -KGAEAANV 125 >gi|297665296|ref|XP_002811006.1| PREDICTED: LOW QUALITY PROTEIN: nuclease-sensitive element-binding protein 1-like [Pongo abelii] Length = 546 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVF-LHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF +H++A+ L ++ +G+ V +D V+ Sbjct: 282 GTVKWFNVRNGYGFI---NRNDTKEDVFVVHQTAIKKNXPRRYLRSVGDGETVEFDVVEG 338 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 339 E-KGAEAANV 347 >gi|55451|emb|CAA40847.1| Y box-binbing protein [Mus musculus] Length = 321 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 58 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114 Query: 61 ANGKYSAEN 69 G +A Sbjct: 115 -KGAEAANV 122 >gi|2745892|gb|AAB94768.1| Y box transcription factor [Mus musculus] Length = 299 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 36 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 92 Query: 61 ANGKYSAEN 69 G +A Sbjct: 93 -KGAEAANV 100 >gi|295705597|ref|YP_003598672.1| cold shock protein [Bacillus megaterium DSM 319] gi|294803256|gb|ADF40322.1| cold shock protein [Bacillus megaterium DSM 319] Length = 70 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 H+G++K +N KG GFITP +VF H +A+ NL+EGQ V ++ + A Sbjct: 4 HKGTVKSFNESKGSGFITP---KNGSKEVFFHSNAIDREEYKNLSEGQKVEFEIHKG-AK 59 Query: 63 GKYS 66 G + Sbjct: 60 GPSA 63 >gi|226364441|ref|YP_002782223.1| cold shock protein [Rhodococcus opacus B4] gi|226242930|dbj|BAH53278.1| cold shock protein [Rhodococcus opacus B4] Length = 139 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ +KG+GF++ E G+DV++ SA+ G+ L GQ V + Sbjct: 4 VPTGKVKWYDVEKGFGFLSQE----EGEDVYVRSSAL-PEGVEGLKAGQRVEFGMAAGRR 58 Query: 62 NGKYSAENLKLVPKS 76 A +LK++ + Sbjct: 59 G--PQALSLKVLDPA 71 >gi|224048372|ref|XP_002196412.1| PREDICTED: lin-28 homolog B [Taeniopygia guttata] Length = 258 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 39 TGHCKWFNVRMGFGFISMSNREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 98 Query: 60 DAN 62 Sbjct: 99 SKG 101 >gi|1402751|gb|AAC80242.1| major cold-shock protein [Enterococcus faecalis] Length = 45 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFI+ E G DVF+H SA+ G L EGQ VT+D +D Sbjct: 1 EKGFGFISRE----DGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSDR 45 >gi|300770548|ref|ZP_07080427.1| competence factor transporter ComB [Sphingobacterium spiritivorum ATCC 33861] gi|300763024|gb|EFK59841.1| competence factor transporter ComB [Sphingobacterium spiritivorum ATCC 33861] Length = 63 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K++N KG+GFITP + DVF+H + + + + EG VTY+ + Sbjct: 1 MNTGTVKFFNETKGFGFITP---QDGSADVFVHTTGLKNQ----VREGDEVTYEVERTPK 53 Query: 62 NGKYSAENLKL 72 +A N++L Sbjct: 54 G--LNAINVRL 62 >gi|195379482|ref|XP_002048507.1| GJ14010 [Drosophila virilis] gi|194155665|gb|EDW70849.1| GJ14010 [Drosophila virilis] Length = 340 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G+LV +D V Sbjct: 47 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIG 103 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 104 E-KGNEAANV 112 >gi|300790296|ref|YP_003770587.1| cold shock protein CspA [Amycolatopsis mediterranei U32] gi|299799810|gb|ADJ50185.1| cold shock protein CspA [Amycolatopsis mediterranei U32] Length = 128 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF+T + G DV++ ++A+ G+ L GQ + + + Sbjct: 1 MPTGKVKWYDAEKGFGFVTQD----GGADVYIRKAAL-PQGVEGLKAGQRLEFGVA-DGR 54 Query: 62 NGKYSAENLKLVPKSS 77 G + L P S Sbjct: 55 RGPQALSVRLLDPPPS 70 >gi|30089118|emb|CAD27800.1| Y1 protein [Dugesia etrusca] Length = 280 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G +KW+N GYGFI ++ +D+F+H++A+ ++ +G+ V +D V+ Sbjct: 31 NGKVKWFNVKSGYGFI---NRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEG 87 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 88 E-KGLEAANV 96 >gi|293345049|ref|XP_002725925.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 1 [Rattus norvegicus] gi|293356922|ref|XP_001069344.2| PREDICTED: lin-28 homolog B isoform 1 [Rattus norvegicus] Length = 271 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EG+ DVF+H+S + G +L EG+ V + + ++ Sbjct: 29 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 88 Query: 60 DAN 62 Sbjct: 89 PKG 91 >gi|284009214|emb|CBA76294.1| cold shock protein [Arsenophonus nasoniae] Length = 72 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ ++G+GFITP + +VF+H S + + L EGQ V+Y Q Sbjct: 7 GLVKWFDGNRGFGFITP---NDGSKEVFVHYSEIKNTHYQVLYEGQEVSYTPFQGMKG-- 61 Query: 65 YSAENLKLV 73 +A N+ ++ Sbjct: 62 NTATNVVVL 70 >gi|3121922|sp|Q44317|CSPA_AERSA RecName: Full=Major cold-shock protein gi|1402733|gb|AAC80231.1| major cold-shock protein [Aeromonas salmonicida] Length = 46 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFI+P + DVF+H SA+ S L EGQ V + Q Sbjct: 1 EKGFGFISP---ADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQGQK 46 >gi|242008101|ref|XP_002424851.1| Y box binding protein, putative [Pediculus humanus corporis] gi|212508401|gb|EEB12113.1| Y box binding protein, putative [Pediculus humanus corporis] Length = 264 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H+SA+ + ++ +G++V +D V Sbjct: 25 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIVKNNPKKLVRSVGDGEVVEFDVVVG 81 Query: 60 DANGKYSAEN 69 G +A Sbjct: 82 G-KGNEAANV 90 >gi|195128621|ref|XP_002008760.1| GI13673 [Drosophila mojavensis] gi|193920369|gb|EDW19236.1| GI13673 [Drosophila mojavensis] Length = 335 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H+SA+A + ++ +G+LV +D V Sbjct: 47 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIARNNPKKAVRSVGDGELVEFDVVIG 103 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 104 E-KGNEAANV 112 >gi|78042603|ref|NP_001026942.1| protein lin-28 homolog B [Mus musculus] gi|71724928|gb|AAZ38894.1| LIN28B [Mus musculus] gi|111598825|gb|AAH89037.1| Lin-28 homolog B (C. elegans) [Mus musculus] Length = 271 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EG+ DVF+H+S + G +L EG+ V + + ++ Sbjct: 29 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 88 Query: 60 DAN 62 Sbjct: 89 PKG 91 >gi|195493731|ref|XP_002094541.1| GE20150 [Drosophila yakuba] gi|194180642|gb|EDW94253.1| GE20150 [Drosophila yakuba] Length = 353 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI + E DVF+H+SA+A + ++ +G++V +D V Sbjct: 64 TGTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 120 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 121 E-KGNEAANV 129 >gi|114608662|ref|XP_001143138.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 269 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 50 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 109 Query: 60 DAN 62 Sbjct: 110 SKG 112 >gi|226475498|emb|CAX77802.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 217 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|224000840|ref|XP_002290092.1| cold-shock DNA-binding domain-containing protein [Thalassiosira pseudonana CCMP1335] gi|220973514|gb|EED91844.1| cold-shock DNA-binding domain-containing protein [Thalassiosira pseudonana CCMP1335] Length = 72 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 ++ KG+GFI P+ + DVF+H++++ G +L E + V + V+ D NG+ A + Sbjct: 1 FDTAKGFGFIVPD---DGTKDVFVHQTSIKVEGFRSLAENEAVEFR-VETDTNGRLRALD 56 Query: 70 LK 71 + Sbjct: 57 VT 58 >gi|197105102|ref|YP_002130479.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] gi|196478522|gb|ACG78050.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] Length = 202 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 4 RGSIKWYNPDKGYGFITPEGSTE-SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW++ KGYGFI P+ + DV LH +++ S+G + EG L+T D V+ Sbjct: 28 TGRVKWFDAGKGYGFIVPDDPAQTDLKDVLLHVTSLRSSGREHCLEGSLITCDVVRR-PK 86 Query: 63 GKYSAENLKLVPKSS 77 G AE + L ++ Sbjct: 87 GWQVAEVVDLDESTA 101 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + + +KW+N KGYGF+ + D+F+H + +G+ +L G+ V + + Sbjct: 133 LEQAKVKWFNRAKGYGFVIRDSQP---GDIFVHIETLRRSGMEDLQPGENVMVRFAEG-P 188 Query: 62 NGKYSAE 68 G AE Sbjct: 189 KGLVVAE 195 >gi|119568818|gb|EAW48433.1| lin-28 homolog B (C. elegans), isoform CRA_a [Homo sapiens] Length = 257 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 38 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97 Query: 60 DAN 62 Sbjct: 98 SKG 100 >gi|297291425|ref|XP_002803893.1| PREDICTED: protein lin-28 homolog B isoform 2 [Macaca mulatta] Length = 255 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 38 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97 Query: 60 DAN 62 Sbjct: 98 SKG 100 >gi|255038433|ref|YP_003089054.1| cold-shock DNA-binding domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951189|gb|ACT95889.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM 18053] Length = 63 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KGYGFI P + D+F+H S + + E V+Y+ V+N Sbjct: 1 MAEGTVKFFNESKGYGFIQP---SNGEKDIFVHVSGLQDD----IRENDKVSYE-VENGR 52 Query: 62 NGKYSAENLKLV 73 G +A N++++ Sbjct: 53 KG-LNAVNVRVI 63 >gi|226474418|emb|CAX71695.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 217 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|290543326|ref|NP_001166512.1| Y box binding protein 1 [Cavia porcellus] gi|194241598|gb|ACF35054.1| YB1 [Cavia porcellus] Length = 324 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117 Query: 61 ANGKYSAEN 69 G +A Sbjct: 118 -KGAEAANV 125 >gi|50978844|ref|NP_001003127.1| Y-box protein ZONAB-A [Canis lupus familiaris] gi|8100510|gb|AAF72335.1|AF171061_1 Y-box protein ZONAB-A [Canis lupus familiaris] Length = 304 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H +A+ L ++ +G+ V +D V+ + Sbjct: 95 GTVKWFNVRNGYGFI---NRNDTKEDVFVHHTAIKKNNPRKYLRSVGDGETVEFDVVEGE 151 Query: 61 ANGKYSAEN 69 G +A Sbjct: 152 -KGAEAANV 159 >gi|108804086|ref|YP_644023.1| cold-shock DNA-binding protein family protein [Rubrobacter xylanophilus DSM 9941] gi|108765329|gb|ABG04211.1| cold-shock DNA-binding protein family [Rubrobacter xylanophilus DSM 9941] Length = 197 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G +KW++P+KGYGF+ G+D+F+H S V +L +G V Y+ +N+ Sbjct: 133 REQGRVKWFDPEKGYGFLV----RPGGEDLFVHHSEVEGDA-SSLGQGVEVEYEVGRNER 187 Query: 62 NGKYSAENLKLV 73 +A ++++ Sbjct: 188 G--PNARRVRVL 197 >gi|62859889|ref|NP_001016677.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis] gi|89267862|emb|CAJ82694.1| Nuclease sensitive element binding protein 1 [Xenopus (Silurana) tropicalis] gi|89268717|emb|CAJ83277.1| Nuclease sensitive element binding protein 1 [Xenopus (Silurana) tropicalis] gi|213624244|gb|AAI70833.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis] gi|213625546|gb|AAI70835.1| Y box binding protein 1 [Xenopus (Silurana) tropicalis] Length = 306 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 39 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95 Query: 61 ANGKYSAEN 69 G +A Sbjct: 96 -KGAEAANV 103 >gi|297678780|ref|XP_002817240.1| PREDICTED: LOW QUALITY PROTEIN: protein lin-28 homolog B-like [Pongo abelii] Length = 269 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 50 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 109 Query: 60 DAN 62 Sbjct: 110 SKG 112 >gi|148698506|gb|EDL30453.1| mCG4206 [Mus musculus] Length = 268 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 5 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 61 Query: 61 ANGKYSAEN 69 G +A Sbjct: 62 -KGAEAANV 69 >gi|38142418|dbj|BAC99313.2| brain Y-box binding protein 1 [Rattus norvegicus] Length = 322 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 59 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEEE 115 Query: 61 ANGKYSAEN 69 G +A Sbjct: 116 -KGAEAANV 123 >gi|259089373|ref|NP_001158512.1| Y-box binding protein [Oncorhynchus mykiss] gi|219665297|gb|ACL31579.1| Y-box binding protein [Oncorhynchus mykiss] Length = 301 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ DDVF+H++A+ L ++ +G++V +D V+ + Sbjct: 42 GTVKWFNVRNGYGFI---NRNDTKDDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 98 Query: 61 ANGKYSAEN 69 G +A Sbjct: 99 -KGAEAANV 106 >gi|291516236|emb|CBK69852.1| Cold shock proteins [Bifidobacterium longum subsp. longum F8] Length = 79 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV 57 + +G++K++ KG GFI P+ + G+DVF+H + + G L EG V Y Sbjct: 1 MAQGTVKFFLAKKGVGFIQPD---DGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPA 57 Query: 58 QNDANGKYSAENLKLVPKSS 77 + G + + +KL + Sbjct: 58 SSG-KGTQAKDVVKLSSGEA 76 >gi|238789311|ref|ZP_04633098.1| Cold shock-like protein [Yersinia frederiksenii ATCC 33641] gi|238792392|ref|ZP_04636026.1| Cold shock-like protein [Yersinia intermedia ATCC 29909] gi|238722643|gb|EEQ14296.1| Cold shock-like protein [Yersinia frederiksenii ATCC 33641] gi|238728318|gb|EEQ19838.1| Cold shock-like protein [Yersinia intermedia ATCC 29909] Length = 65 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW+N +GYGFI+P + DV++ ++A+A+ +L+EGQ V + ++ +G Sbjct: 1 MGRVKWFNQSEGYGFISPH---DGSLDVYVSKTAIANTKNKSLSEGQDVEFSTYRS-IHG 56 Query: 64 KYSAENL 70 +A+ + Sbjct: 57 PSAADVI 63 >gi|224282740|ref|ZP_03646062.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171] gi|310287199|ref|YP_003938457.1| Cold shock protein [Bifidobacterium bifidum S17] gi|311064061|ref|YP_003970786.1| cold shock protein CspB [Bifidobacterium bifidum PRL2010] gi|313139899|ref|ZP_07802092.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171] gi|309251135|gb|ADO52883.1| Cold shock protein [Bifidobacterium bifidum S17] gi|310866380|gb|ADP35749.1| CspB Cold shock protein [Bifidobacterium bifidum PRL2010] gi|313132409|gb|EFR50026.1| cold shock protein [Bifidobacterium bifidum NCIMB 41171] Length = 129 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++W++ KG+GFIT + G+DVFL +A+ G+ L +G V + + + Sbjct: 1 MPSGRVRWFDAKKGFGFIT----NDEGEDVFLPAAAL-PDGVTTLRKGARVEFSVI-DGR 54 Query: 62 NGKYS 66 G + Sbjct: 55 KGPQA 59 >gi|61837945|ref|XP_606503.1| PREDICTED: cold shock domain protein A short-like [Bos taurus] gi|297493193|ref|XP_002700192.1| PREDICTED: cold shock domain protein A short-like [Bos taurus] gi|296470652|gb|DAA12767.1| cold shock domain protein A short-like [Bos taurus] Length = 323 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG---LF-NLTEGQLVTYDYVQND 60 G++ W+ KGYGFI+ + + E DVF+H +A+ ++ +G++V +D VQ + Sbjct: 70 GTVVWFKEKKGYGFISRQDTQE---DVFVHHTAITGKNPCTYRGSVDDGEMVEFDVVQGE 126 Query: 61 ANGKYSAEN 69 G +A Sbjct: 127 W-GTEAANV 134 >gi|114608664|ref|XP_001143220.1| PREDICTED: protein lin-28 homolog B isoform 2 [Pan troglodytes] Length = 250 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90 Query: 60 DAN 62 Sbjct: 91 SKG 93 >gi|465508|sp|Q06066|YBOX1_CHICK RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=Y-box transcription factor; AltName: Full=Y-box-binding protein 1; Short=YB-1 gi|289797|gb|AAA02573.1| YB-1 protein [Gallus gallus] Length = 321 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 58 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114 Query: 61 ANGKYSAEN 69 G +A Sbjct: 115 -KGAEAANV 122 >gi|47214418|emb|CAG00259.1| unnamed protein product [Tetraodon nigroviridis] Length = 179 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GFI+ + DVF+H+S + G +L EG+ + + + ++ Sbjct: 6 GVCKWFNMRMGFGFISMSSRDGAPLDQNLDVFVHQSKLHMEGFRSLREGEALEFSFKKSS 65 Query: 61 AN 62 Sbjct: 66 KG 67 >gi|51972214|ref|NP_001004317.1| protein lin-28 homolog B [Homo sapiens] gi|74758701|sp|Q6ZN17|LN28B_HUMAN RecName: Full=Protein lin-28 homolog B; Short=Lin-28B gi|47077279|dbj|BAD18558.1| unnamed protein product [Homo sapiens] gi|71724934|gb|AAZ38897.1| LIN28B [Homo sapiens] gi|119568819|gb|EAW48434.1| lin-28 homolog B (C. elegans), isoform CRA_b [Homo sapiens] gi|123239097|emb|CAI21661.2| lin-28 homolog B (C. elegans) [Homo sapiens] gi|123240273|emb|CAI20969.2| lin-28 homolog B (C. elegans) [Homo sapiens] gi|187953595|gb|AAI37527.1| Lin-28 homolog B (C. elegans) [Homo sapiens] gi|223459806|gb|AAI37528.1| Lin-28 homolog B (C. elegans) [Homo sapiens] Length = 250 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90 Query: 60 DAN 62 Sbjct: 91 SKG 93 >gi|149640530|ref|XP_001506004.1| PREDICTED: similar to LIN28B [Ornithorhynchus anatinus] Length = 274 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS + DVF+H+S + G +L EG+ + + + ++ Sbjct: 51 TGHCKWFNVRMGFGFISMISREGSPLDPAVDVFVHQSKLHMEGFRSLKEGEPLEFTFKKS 110 Query: 60 DAN 62 Sbjct: 111 SKG 113 >gi|109072184|ref|XP_001086990.1| PREDICTED: protein lin-28 homolog B isoform 1 [Macaca mulatta] Length = 248 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90 Query: 60 DAN 62 Sbjct: 91 SKG 93 >gi|2502064|gb|AAB80761.1| Y-box binding protein A [Columba livia] Length = 278 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 70 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQAAIKKNNPRKYLRSVGDGETVEFDVVEGE 126 Query: 61 ANGKYSAEN 69 G +A Sbjct: 127 -KGAEAANV 134 >gi|170761472|ref|YP_001787094.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree] gi|169408461|gb|ACA56872.1| cold shock protein [Clostridium botulinum A3 str. Loch Maree] Length = 69 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60 +H G++KW++ ++GYGFI S +G DV++H + +L EG+ V +D V+ + Sbjct: 3 MHTGTVKWFDNERGYGFI----SGNNGKDVYVHSMQIKEKTHNKDLHEGEEVLFDIVEKE 58 Query: 61 ANGKYSAENLKLV 73 A N++ + Sbjct: 59 KG--PIAINVQKL 69 >gi|332218575|ref|XP_003258430.1| PREDICTED: protein lin-28 homolog B-like [Nomascus leucogenys] Length = 250 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90 Query: 60 DAN 62 Sbjct: 91 SKG 93 >gi|296210997|ref|XP_002752196.1| PREDICTED: hypothetical protein LOC100396927 [Callithrix jacchus] Length = 302 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 92 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 148 Query: 61 ANGKYSAEN 69 G +A Sbjct: 149 -KGAEAANV 156 >gi|294884847|gb|ADF47434.1| cold shock domain-containing protein A [Dugesia japonica] Length = 190 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 6/62 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQND 60 G +KWYN KGYGFI + E DVF+H+SA+ +L E + V +D V+ Sbjct: 16 TGKVKWYNVKKGYGFIHRDDVDE---DVFVHQSAISRCQPGKQKSLGEDEDVLFDVVKGS 72 Query: 61 AN 62 Sbjct: 73 KG 74 >gi|226475490|emb|CAX77798.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 217 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|2073111|dbj|BAA19850.1| Y box protein 2 [Carassius auratus] Length = 297 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D V+ Sbjct: 22 EGTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEA 78 Query: 60 DANGKYSAEN 69 A G +A Sbjct: 79 -AKGSEAANV 87 >gi|1402739|gb|AAC80233.1| major cold-shock protein [Bacillus subtilis] Length = 45 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 EKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNR 45 >gi|226475506|emb|CAX77806.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 217 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|226474412|emb|CAX71692.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226474414|emb|CAX71693.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226474416|emb|CAX71694.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226474420|emb|CAX71696.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226474426|emb|CAX71699.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226475492|emb|CAX77799.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226475494|emb|CAX77800.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226475496|emb|CAX77801.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226475500|emb|CAX77803.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226475508|emb|CAX77807.1| putative cold shock domain protein A [Schistosoma japonicum] gi|226475510|emb|CAX77808.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 217 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|14150689|gb|AAK54601.1|AF373220_1 Y-box DNA-binding protein [Schistosoma japonicum] gi|14039811|gb|AAK53394.1| Y-box binding protein [Schistosoma japonicum] Length = 202 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|3821925|gb|AAC69704.1| major cold shock protein [Streptococcus thermophilus] Length = 50 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 KG+GFIT +E G D+F H S++ S G +L E Q V +D V+ G +A Sbjct: 1 KGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFD-VEVGQRGPQAAN 50 >gi|148225376|ref|NP_001087255.1| nuclease-sensitive element-binding protein 1 [Ovis aries] gi|140326474|gb|ABO86713.1| nuclease sensitive element binding protein 1 [Ovis aries] Length = 288 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 25 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGE 81 Query: 61 ANGKYSAEN 69 G +A Sbjct: 82 -KGAEAANV 89 >gi|82242626|sp|Q8AVK2|LN28B_XENLA RecName: Full=Protein lin-28 homolog B; Short=Lin-28B gi|27503403|gb|AAH42225.1| LOC373796 protein [Xenopus laevis] Length = 252 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GFI+ EGS E+ DVF+H+S + G +L EG+ V + + ++ Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDGFRSLKEGEPVEFTFKKSS 94 Query: 61 AN 62 Sbjct: 95 KG 96 >gi|241813115|ref|XP_002414626.1| Y1 protein, putative [Ixodes scapularis] gi|215508837|gb|EEC18291.1| Y1 protein, putative [Ixodes scapularis] Length = 209 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYV--Q 58 G+++W+N GYGFI + E D+F+H++A+ ++EG+ V +D V + Sbjct: 27 GTVQWFNVKNGYGFINRNDTRE---DIFVHQTAITRNHPQKLTRTVSEGETVQFDVVVDE 83 Query: 59 NDANGKY 65 A G+ Sbjct: 84 ERARGRQ 90 >gi|296198877|ref|XP_002746914.1| PREDICTED: protein lin-28 homolog B-like isoform 2 [Callithrix jacchus] Length = 257 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 38 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97 Query: 60 DAN 62 Sbjct: 98 SKG 100 >gi|226475502|emb|CAX77804.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 217 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|194131839|gb|ACF33225.1| Y-box protein Lyb2 [Lethenteron japonicum] Length = 181 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 65 GTVKWFNVKNGYGFI---NRNDTKEDVFIHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 121 Query: 61 ANGKYSAEN 69 G +A Sbjct: 122 -KGAEAANV 129 >gi|197632617|gb|ACH71032.1| Y-box binding protein-1 [Salmo salar] gi|209732334|gb|ACI67036.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|221222302|gb|ACM09812.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|223646798|gb|ACN10157.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|223649012|gb|ACN11264.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|223672655|gb|ACN12509.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|303663491|gb|ADM16105.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] Length = 300 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPKKYLRSVGDGETVEFDVVEGE 97 Query: 61 ANGKYSAEN 69 G +A Sbjct: 98 -KGAEAANV 105 >gi|193212293|ref|YP_001998246.1| cold-shock DNA-binding domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193085770|gb|ACF11046.1| cold-shock DNA-binding domain protein [Chlorobaculum parvum NCIB 8327] Length = 88 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 + + +KW++ KGYGFI + + G+D+F+H SA+ S L + V Y+ + Sbjct: 1 MAKSKVKWFDGKKGYGFI---LNPDGGEDIFVHFSAIISDQSFKVLNQDSEVEYELDKTQ 57 Query: 61 AN 62 Sbjct: 58 KG 59 >gi|161528035|ref|YP_001581861.1| cold-shock DNA-binding domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160339336|gb|ABX12423.1| cold-shock DNA-binding domain protein [Nitrosopumilus maritimus SCM1] Length = 63 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 10/70 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++KW+N KG+GFI E GDD+F+H++ V G + EG V ++ + Sbjct: 1 MEQGTVKWFNRTKGFGFIERE----GGDDLFVHKTDV--DGF--INEGDKVEFEVGEGRK 52 Query: 62 NGKYSAENLK 71 +A+ +K Sbjct: 53 G--PAAQKVK 60 >gi|302532749|ref|ZP_07285091.1| cold shock domain-containing protein CspD [Streptomyces sp. C] gi|302441644|gb|EFL13460.1| cold shock domain-containing protein CspD [Streptomyces sp. C] Length = 71 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFN 45 + G++KW+N +KG+GFI+ + + G DVF+H S + G + Sbjct: 1 MATGTVKWFNSEKGFGFISQD---DGGPDVFVHFSPIPGDGAFKS 42 >gi|293345051|ref|XP_002725926.1| PREDICTED: lin-28 homolog B (C. elegans) isoform 2 [Rattus norvegicus] gi|293356926|ref|XP_002729027.1| PREDICTED: lin-28 homolog B isoform 3 [Rattus norvegicus] Length = 247 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EG+ DVF+H+S + G +L EG+ V + + ++ Sbjct: 29 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 88 Query: 60 DAN 62 Sbjct: 89 PKG 91 >gi|1402737|gb|AAC80232.1| major cold-shock protein [Bacillus cereus] Length = 45 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFI E G+DVF+H SA+ G L EGQ VT++ Q + Sbjct: 1 EKGFGFIEVE----GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNR 45 >gi|226475504|emb|CAX77805.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 203 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|116248187|sp|Q45KJ6|LN28B_MOUSE RecName: Full=Protein lin-28 homolog B; Short=Lin-28B Length = 247 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EG+ DVF+H+S + G +L EG+ V + + ++ Sbjct: 29 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 88 Query: 60 DAN 62 Sbjct: 89 PKG 91 >gi|27503841|gb|AAH42217.1| Nsep1 protein [Xenopus laevis] Length = 304 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 39 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95 Query: 61 ANGKYSAEN 69 G +A Sbjct: 96 -KGAEAANV 103 >gi|296535726|ref|ZP_06897893.1| cold-shock DNA-binding domain protein [Roseomonas cervicalis ATCC 49957] gi|296263939|gb|EFH10397.1| cold-shock DNA-binding domain protein [Roseomonas cervicalis ATCC 49957] Length = 270 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++ +G+GF+TP+ + G DVFLH S + AG ++ +G+ ++ + Q Sbjct: 208 GTVKWFDQVRGFGFVTPD---DGGADVFLHSSVLQRAGKQDVQQGEKLSLEVRQGQRG-- 262 Query: 65 YSAENLK 71 A LK Sbjct: 263 RQAVILK 269 Score = 54.2 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 +KWYN KG+GF+ G DVF H SA+ AG+ G + + + + Sbjct: 18 VKWYNGRKGFGFV----LGPDGQDVFFHASALTEAGIEPPETGDKLVCEIGTDRQGRR 71 >gi|3831560|gb|AAC70001.1| major cold shock protein [Bifidobacterium animalis] Length = 50 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 5/55 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 KG+GFIT E G DVF+H SA+ G +L +GQ V+Y+ Q+D G +A Sbjct: 1 KGFGFIT----GEDGQDVFVHFSAINGEGYKSLDKGQAVSYNVKQSD-RGPQAAN 50 >gi|226475488|emb|CAX77797.1| putative cold shock domain protein A [Schistosoma japonicum] Length = 214 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|297521145|ref|ZP_06939531.1| major cold shock protein [Escherichia coli OP50] Length = 51 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 5/54 (9%) Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 FITP+ + DVF+H SA+ + G +L EGQ V++ ++ A G +A N+ Sbjct: 1 FITPD---DGSKDVFVHFSAIQNDGYKSLDEGQKVSFTI-ESGAKGP-AAGNVT 49 >gi|149521716|ref|XP_001517644.1| PREDICTED: similar to LD37574p, partial [Ornithorhynchus anatinus] Length = 281 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G +KW+N GYGFI E DVF+H+SA+ ++ EG++V +D V Sbjct: 38 GVVKWFNVRHGYGFICRIDMQE---DVFIHQSAIVRNNPRKCQRSVGEGEVVQFDLV-AG 93 Query: 61 ANGKYSAENLKL 72 A G +A L Sbjct: 94 AKGTEAANVTGL 105 >gi|256089122|ref|XP_002580665.1| cold shock domain protein A [Schistosoma mansoni] gi|238666264|emb|CAZ36904.1| cold shock domain protein A, putative [Schistosoma mansoni] Length = 175 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 RG +KW+N GYGFIT +++ D+F+H++A++ +L E + V + V+ Sbjct: 19 RGVVKWFNVKAGYGFITR---SDTSSDIFVHQTAISRNNPGKMQRSLQENEEVEFFVVEG 75 Query: 60 DAN 62 D Sbjct: 76 DKG 78 >gi|301763343|ref|XP_002917091.1| PREDICTED: protein lin-28 homolog B-like [Ailuropoda melanoleuca] Length = 257 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 38 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97 Query: 60 DAN 62 Sbjct: 98 SKG 100 >gi|47123238|gb|AAH70000.1| Y box binding protein 1 [Danio rerio] Length = 310 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V + V+ + Sbjct: 41 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFAVVEGE 97 Query: 61 ANGKYSAEN 69 G +A Sbjct: 98 -KGAEAANV 105 >gi|1402741|gb|AAC80234.1| major cold-shock protein [Bacillus subtilis] Length = 45 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFI EG DDVF+H SA+ G L EGQ V+++ V+ + Sbjct: 1 EKGFGFIEVEGQ----DDVFVHFSAIQGEGFKTLEEGQSVSFEIVEGNR 45 >gi|327335065|gb|EGE76776.1| cold-shock domain protein [Propionibacterium acnes HL097PA1] Length = 135 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 9 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 63 Query: 62 NGKYSAENLKLVPKSSN 78 A +L+++ ++ Sbjct: 64 G--EQALSLQIIETPAS 78 >gi|296198875|ref|XP_002746913.1| PREDICTED: protein lin-28 homolog B-like isoform 1 [Callithrix jacchus] Length = 250 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90 Query: 60 DAN 62 Sbjct: 91 SKG 93 >gi|213983151|ref|NP_001135490.1| lin-28 homolog B [Xenopus (Silurana) tropicalis] gi|195539937|gb|AAI67886.1| Unknown (protein for MGC:135309) [Xenopus (Silurana) tropicalis] Length = 253 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFIT---PEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GFI+ EGS E+ DVF+H+S + G +L EG+ V + + ++ Sbjct: 35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSS 94 Query: 61 AN 62 Sbjct: 95 KG 96 >gi|3121931|sp|Q53984|CSPA_STRDY RecName: Full=Major cold shock protein gi|1402775|gb|AAC80257.1| major cold-shock protein [Streptococcus dysgalactiae] Length = 45 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFI+ TE+G DVF H SA+ + G L EGQ V +D + Sbjct: 1 EKGFGFIS----TENGQDVFAHFSAIQTNGFKTLEEGQKVEFDVEEGQR 45 >gi|313802611|gb|EFS43833.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL110PA2] Length = 135 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 9 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 63 Query: 62 NGKYSAENLKLVPKSSN 78 A +L+++ ++ Sbjct: 64 G--EQALSLQIIETPAS 78 >gi|332292095|ref|YP_004430704.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170181|gb|AEE19436.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 63 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KGYGFIT + ++G D+F+H + + + EG V Y + G Sbjct: 2 EGTVKFFNESKGYGFITND---DTGKDIFVHVTGLNGE---TINEGDKVEY-VEEEGRKG 54 Query: 64 KYSAEN 69 +A+ Sbjct: 55 LTAAQV 60 >gi|313765415|gb|EFS36779.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL013PA1] gi|313772599|gb|EFS38565.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL074PA1] gi|313792938|gb|EFS41005.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL110PA1] gi|313806623|gb|EFS45130.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL087PA2] gi|313810820|gb|EFS48534.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL083PA1] gi|313814335|gb|EFS52049.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL025PA1] gi|313815182|gb|EFS52896.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL059PA1] gi|313817166|gb|EFS54880.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL046PA2] gi|313821769|gb|EFS59483.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL036PA1] gi|313824339|gb|EFS62053.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL036PA2] gi|313826698|gb|EFS64412.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL063PA1] gi|313828486|gb|EFS66200.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL063PA2] gi|313831939|gb|EFS69653.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL007PA1] gi|313834520|gb|EFS72234.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL056PA1] gi|313840249|gb|EFS77963.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL086PA1] gi|314915942|gb|EFS79773.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL005PA4] gi|314916971|gb|EFS80802.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL050PA1] gi|314921491|gb|EFS85322.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL050PA3] gi|314926877|gb|EFS90708.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL036PA3] gi|314931185|gb|EFS95016.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL067PA1] gi|314954756|gb|EFS99162.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL027PA1] gi|314958923|gb|EFT03025.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL002PA1] gi|314961218|gb|EFT05319.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL002PA2] gi|314964355|gb|EFT08455.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL082PA1] gi|314969454|gb|EFT13552.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL037PA1] gi|314974521|gb|EFT18616.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL053PA1] gi|314977286|gb|EFT21381.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL045PA1] gi|314980557|gb|EFT24651.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL072PA2] gi|314985613|gb|EFT29705.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL005PA1] gi|314987570|gb|EFT31661.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL005PA2] gi|314988965|gb|EFT33056.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL005PA3] gi|315078631|gb|EFT50662.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL053PA2] gi|315081909|gb|EFT53885.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL078PA1] gi|315082596|gb|EFT54572.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL027PA2] gi|315086307|gb|EFT58283.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL002PA3] gi|315087557|gb|EFT59533.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL072PA1] gi|315097592|gb|EFT69568.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL038PA1] gi|315099808|gb|EFT71784.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL059PA2] gi|315101884|gb|EFT73860.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL046PA1] gi|315106608|gb|EFT78584.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL030PA1] gi|315110397|gb|EFT82373.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL030PA2] gi|327331557|gb|EGE73296.1| cold-shock domain protein [Propionibacterium acnes HL096PA2] gi|327333540|gb|EGE75260.1| cold-shock domain protein [Propionibacterium acnes HL096PA3] gi|327445435|gb|EGE92089.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL013PA2] gi|327447049|gb|EGE93703.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL043PA1] gi|327449915|gb|EGE96569.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL043PA2] gi|327454759|gb|EGF01414.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL087PA3] gi|327455614|gb|EGF02269.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL083PA2] gi|327456893|gb|EGF03548.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL092PA1] gi|328755815|gb|EGF69431.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL087PA1] gi|328756595|gb|EGF70211.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL025PA2] gi|328758679|gb|EGF72295.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL020PA1] gi|328761686|gb|EGF75201.1| cold-shock domain protein [Propionibacterium acnes HL099PA1] Length = 135 Score = 70.8 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 9 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 63 Query: 62 NGKYSAENLKLVPKSSN 78 A +L+++ ++ Sbjct: 64 G--EQALSLQIIETPAS 78 >gi|302392639|ref|YP_003828459.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] gi|302204716|gb|ADL13394.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] Length = 66 Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL 46 + G++KW++ +KGYGFI DDVF+H SA+ G +L Sbjct: 1 MATGTVKWFDSNKGYGFIERPEE----DDVFVHFSAIQDDGFKDL 41 >gi|194216294|ref|XP_001503975.2| PREDICTED: similar to lin-28 homolog B (C. elegans) isoform 2 [Equus caballus] Length = 257 Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EG DVF+H+S + G +L EG+ V + + ++ Sbjct: 38 TGHCKWFNVRMGFGFISMISREGRPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 97 Query: 60 DAN 62 Sbjct: 98 SKG 100 >gi|1353778|gb|AAB01787.1| Y-Box binding protein [Columba livia] Length = 287 Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 24 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 80 Query: 61 ANGKYSAEN 69 G +A Sbjct: 81 -KGAEAANV 88 >gi|311114545|ref|YP_003985766.1| cold-shock domain family protein [Gardnerella vaginalis ATCC 14019] gi|310946039|gb|ADP38743.1| cold-shock domain family protein [Gardnerella vaginalis ATCC 14019] Length = 129 Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++WY+ KGYGFI E G DVFL SA+ + L +G V + V+ Sbjct: 1 MPNGRVRWYDSKKGYGFIC----DEDGKDVFLPSSAL-PESVKELRKGTRVEFSVVEG-R 54 Query: 62 NGKYS 66 G + Sbjct: 55 KGPQA 59 >gi|256089136|ref|XP_002580672.1| Y box binding protein [Schistosoma mansoni] gi|1477478|gb|AAC47760.1| Y-box binding protein [Schistosoma mansoni] gi|1477484|gb|AAC47761.1| Y-box binding protein homolog [Schistosoma mansoni] gi|238666271|emb|CAZ36911.1| Y box binding protein, putative [Schistosoma mansoni] Length = 217 Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|56755411|gb|AAW25885.1| SJCHGC05173 protein [Schistosoma japonicum] gi|226470954|emb|CAX76910.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470956|emb|CAX76911.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470958|emb|CAX76912.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470960|emb|CAX76913.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470962|emb|CAX76914.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470964|emb|CAX76915.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470966|emb|CAX76916.1| putative DNA-binding protein [Schistosoma japonicum] gi|226470968|emb|CAX76917.1| putative DNA-binding protein [Schistosoma japonicum] gi|226473230|emb|CAX71301.1| putative DNA-binding protein [Schistosoma japonicum] gi|226473232|emb|CAX71302.1| putative DNA-binding protein [Schistosoma japonicum] gi|226473234|emb|CAX71303.1| putative DNA-binding protein [Schistosoma japonicum] gi|226473236|emb|CAX71304.1| putative DNA-binding protein [Schistosoma japonicum] gi|226473238|emb|CAX71305.1| putative DNA-binding protein [Schistosoma japonicum] Length = 175 Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 RG +KW+N GYGFIT +++ D+F+H++A++ +L E + V + V+ Sbjct: 19 RGVVKWFNVKAGYGFITR---SDTSSDIFVHQTAISRNNPGKMQRSLQENEEVEFFVVEG 75 Query: 60 DAN 62 D Sbjct: 76 DKG 78 >gi|213512942|ref|NP_001133216.1| Y-box binding protein-2 [Salmo salar] gi|197632619|gb|ACH71033.1| Y-box binding protein-2 [Salmo salar] Length = 301 Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G++V +D V+ + Sbjct: 42 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGE 98 Query: 61 ANGKYSAEN 69 G +A Sbjct: 99 -KGAEAANV 106 >gi|86132446|ref|ZP_01051040.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] gi|85817007|gb|EAQ38191.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] Length = 64 Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KGYGFIT + E+G D+F+H + + + EG V Y + G Sbjct: 2 EGTVKFFNESKGYGFITND---ETGKDIFVHVTGLNGE---TINEGDKVEY-VEEEGRKG 54 Query: 64 KYSAEN 69 +A+ Sbjct: 55 LTAAQV 60 >gi|326932610|ref|XP_003212408.1| PREDICTED: nuclease-sensitive element-binding protein 1-like, partial [Meleagris gallopavo] Length = 134 Score = 70.8 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 6 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 62 Query: 61 ANGKYSAEN 69 G +A Sbjct: 63 -KGAEAANV 70 >gi|119025588|ref|YP_909433.1| cold shock protein [Bifidobacterium adolescentis ATCC 15703] gi|154487048|ref|ZP_02028455.1| hypothetical protein BIFADO_00886 [Bifidobacterium adolescentis L2-32] gi|118765172|dbj|BAF39351.1| cold shock protein [Bifidobacterium adolescentis ATCC 15703] gi|154084911|gb|EDN83956.1| hypothetical protein BIFADO_00886 [Bifidobacterium adolescentis L2-32] Length = 130 Score = 70.8 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++W++ +KGYGFI + ES DDVFL +A+ G+ L +G V Y + + Sbjct: 1 MPSGRVRWFDANKGYGFIQ---TGESTDDVFLPAAAL-PEGVKTLRKGAKVEYSVI-DGR 55 Query: 62 NGKYS 66 G + Sbjct: 56 RGPQA 60 >gi|41055233|ref|NP_957385.1| protein lin-28 homolog A [Danio rerio] gi|82241857|sp|Q803L0|LN28A_DANRE RecName: Full=Protein lin-28 homolog A; Short=Lin-28A gi|27882510|gb|AAH44433.1| Lin-28 homolog (C. elegans) [Danio rerio] gi|94732353|emb|CAK04625.1| novel protein (zgc:55584) [Danio rerio] Length = 202 Score = 70.8 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ EG DVF+H+S + G +L EG+ V + + ++ Sbjct: 36 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSS 95 Query: 61 AN 62 Sbjct: 96 KG 97 >gi|225575513|ref|ZP_03784123.1| hypothetical protein RUMHYD_03605 [Blautia hydrogenotrophica DSM 10507] gi|225037263|gb|EEG47509.1| hypothetical protein RUMHYD_03605 [Blautia hydrogenotrophica DSM 10507] Length = 77 Score = 70.8 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G++KW++P KGYGFI + +G + F+H+S + G +L G+ V+Y + Sbjct: 12 VEHGTVKWFDPVKGYGFIAGD----NGKETFVHQSDILMRGFRHLETGERVSYRVKATEK 67 Query: 62 NGK 64 K Sbjct: 68 GDK 70 >gi|1402771|gb|AAC80254.1| major cold-shock protein [Staphylococcus aureus RN4220] gi|1402781|gb|AAC80256.1| major cold-shock protein [Staphylococcus intermedius] Length = 45 Score = 70.8 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 EKGFGFIEVEGE----NDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDR 45 >gi|114615287|ref|XP_510011.2| PREDICTED: nuclease-sensitive element-binding protein 1-like [Pan troglodytes] Length = 379 Score = 70.8 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT---EGQLVTYDYVQNDA 61 G++KW+N GYGFI ++ +DVF+ ++A+ + L +G+ V +D V+ + Sbjct: 117 GTVKWFNVRNGYGFI---NRNDTKEDVFVPQTAIKNNPRKYLRSVGDGETVEFDVVEGEK 173 Query: 62 NGKYSAENLK 71 + A N+ Sbjct: 174 D--AEAANVT 181 >gi|157278086|ref|NP_001098143.1| Y-box binding protein [Oryzias latipes] gi|27348122|dbj|BAC45236.1| Y-box binding protein [Oryzias latipes] Length = 306 Score = 70.8 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 43 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 99 Query: 61 ANGKYSAEN 69 G +A Sbjct: 100 -KGAEAANV 107 >gi|332025391|gb|EGI65558.1| Y-box factor-like protein [Acromyrmex echinatior] Length = 362 Score = 70.8 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H+SA+ + ++ +G++V +D V Sbjct: 25 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVIG 81 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 82 E-KGHEAANV 90 >gi|158295359|ref|XP_001237771.2| AGAP006108-PA [Anopheles gambiae str. PEST] gi|157015999|gb|EAU76557.2| AGAP006108-PA [Anopheles gambiae str. PEST] Length = 402 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G +KW+N GYGFI + E DVF+H+SA+A + ++ +G+ V +D V Sbjct: 89 TGVVKWFNVKSGYGFINRGDTQE---DVFVHQSAIARNNPKKAVRSVGDGEQVEFDVVIG 145 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 146 E-KGNEAANV 154 >gi|295398664|ref|ZP_06808688.1| cold shock protein CspA [Aerococcus viridans ATCC 11563] gi|294973099|gb|EFG48902.1| cold shock protein CspA [Aerococcus viridans ATCC 11563] Length = 70 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M + G +K +N +G+GFI E G D+F+H SA+ +LT GQ V ++ + Sbjct: 1 MTYYGIVKTFNEKEGFGFIELPDFPEEG-DIFVHFSALLHLEQSSLTVGQKVHFEIAEGK 59 Query: 61 ANGKYSAENLKL 72 A N+ L Sbjct: 60 RG--PQAVNISL 69 >gi|327482221|gb|AEA85531.1| cold-shock DNA-binding domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 235 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M RG++K +N DKG+GFI PE + G+++F+H SAV L G V + D Sbjct: 1 MERRGTLKSWNDDKGFGFIRPE---QGGEELFVHISAVHGE-RRPLV-GDRVLF-VAGRD 54 Query: 61 ANGKYSAENLKL 72 A G+ AE+++L Sbjct: 55 AQGRLRAEHVRL 66 >gi|227539041|ref|ZP_03969090.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241097|gb|EEI91112.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300] Length = 63 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K++N KG+GFITP + D+F+H + + + + EG VTY+ + Sbjct: 1 MNTGTVKFFNETKGFGFITP---QDGSGDIFVHTTGLKNQ----VREGDEVTYEVERTPK 53 Query: 62 NGKYSAENLKL 72 +A N++L Sbjct: 54 G--LNAINVRL 62 >gi|294787495|ref|ZP_06752748.1| cold-shock domain family protein [Parascardovia denticolens F0305] gi|315226929|ref|ZP_07868717.1| cold-shock domain family protein [Parascardovia denticolens DSM 10105] gi|294484851|gb|EFG32486.1| cold-shock domain family protein [Parascardovia denticolens F0305] gi|315121061|gb|EFT84193.1| cold-shock domain family protein [Parascardovia denticolens DSM 10105] Length = 129 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G I+W++ KGYGFIT ++ G+DVF+ ++A+ AG+ L +G V + V + Sbjct: 1 MPAGEIRWFDAKKGYGFIT----SDDGEDVFMPKTAL-PAGVTTLRKGAKVEFSRV-DSR 54 Query: 62 NGKYSAENLKLVPKSS 77 G + + + L P S Sbjct: 55 RGPQAMDVVVLGPTPS 70 >gi|305665589|ref|YP_003861876.1| hypothetical protein FB2170_04800 [Maribacter sp. HTCC2170] gi|88710345|gb|EAR02577.1| hypothetical protein FB2170_04800 [Maribacter sp. HTCC2170] Length = 64 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 7/66 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KGYGFIT + E+G D+F+H +A+ L EG V Y+ + G Sbjct: 2 TGTVKFFNESKGYGFITND---ETGSDIFVHATALNGV---ELKEGDKVEYE-EEEGRKG 54 Query: 64 KYSAEN 69 +A+ Sbjct: 55 MVAAQV 60 >gi|312377865|gb|EFR24595.1| hypothetical protein AND_10704 [Anopheles darlingi] Length = 428 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G +KW+N GYGFI ++ +DVF+H+SA+A + ++ +G+ V +D V Sbjct: 92 TGVVKWFNVKSGYGFI---NRGDTHEDVFVHQSAIARNNPKKAVRSVGDGEEVEFDVVIG 148 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 149 E-KGNEAANV 157 >gi|50841960|ref|YP_055187.1| cold shock protein [Propionibacterium acnes KPA171202] gi|289424366|ref|ZP_06426149.1| cold-shock DNA-binding domain protein [Propionibacterium acnes SK187] gi|289428406|ref|ZP_06430092.1| cold-shock DNA-binding domain protein [Propionibacterium acnes J165] gi|295130039|ref|YP_003580702.1| cold-shock DNA-binding domain protein [Propionibacterium acnes SK137] gi|50839562|gb|AAT82229.1| cold shock protein [Propionibacterium acnes KPA171202] gi|289155063|gb|EFD03745.1| cold-shock DNA-binding domain protein [Propionibacterium acnes SK187] gi|289158378|gb|EFD06595.1| cold-shock DNA-binding domain protein [Propionibacterium acnes J165] gi|291375123|gb|ADD98977.1| cold-shock DNA-binding domain protein [Propionibacterium acnes SK137] gi|332674879|gb|AEE71695.1| cold shock protein [Propionibacterium acnes 266] Length = 127 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 1 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 55 Query: 62 NGKYSAENLKLVPKSSN 78 A +L+++ ++ Sbjct: 56 G--EQALSLQIIETPAS 70 >gi|85717414|ref|ZP_01048364.1| cold shock protein [Nitrobacter sp. Nb-311A] gi|85695769|gb|EAQ33677.1| cold shock protein [Nitrobacter sp. Nb-311A] Length = 62 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 +G FI PE G DVF+H SAV AGL +L+EG V+++ VQN GK SAE Sbjct: 5 AEGLRFIEPES---GGKDVFVHISAVERAGLSSLSEGDKVSHEVVQN--RGKESAE 55 >gi|189347308|ref|YP_001943837.1| cold-shock DNA-binding domain protein [Chlorobium limicola DSM 245] gi|189341455|gb|ACD90858.1| cold-shock DNA-binding domain protein [Chlorobium limicola DSM 245] Length = 85 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + R +KW++ KGYGFI + G+DVF+H SA+ S L + V + + Sbjct: 1 MERSKVKWFDGKKGYGFIV---NPNGGEDVFVHFSAIVSEQTFKVLNQDADVEFVLEKTQ 57 Query: 61 ANGKYSAENLK 71 Y A+N++ Sbjct: 58 KG--YQAKNVR 66 >gi|313205947|ref|YP_004045124.1| colD-shock DNA-binding protein family [Riemerella anatipestifer DSM 15868] gi|312445263|gb|ADQ81618.1| cold-shock DNA-binding protein family [Riemerella anatipestifer DSM 15868] gi|315022260|gb|EFT35288.1| Cold shock protein CspA [Riemerella anatipestifer RA-YM] gi|325336613|gb|ADZ12887.1| Cold shock protein [Riemerella anatipestifer RA-GD] Length = 63 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 11/72 (15%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQND 60 + G++K++N KG+GFITP + G+DVF+H S GL + E V Y+ Q Sbjct: 1 MQEGTVKFFNETKGFGFITP---SNGGEDVFVHTS-----GLKTKVHENDKVVYELQQGK 52 Query: 61 ANGKYSAENLKL 72 +A N+KL Sbjct: 53 KG--INAVNVKL 62 >gi|110680380|ref|YP_683387.1| cold shock protein [Roseobacter denitrificans OCh 114] gi|109456496|gb|ABG32701.1| cold shock protein [Roseobacter denitrificans OCh 114] Length = 178 Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GF+ + G D+ LH + + + G ++ +G V + VQ G Sbjct: 13 GVVKWFDPVKGFGFVVADA---GGPDILLHVNVLRNFGQSSVADGARVELE-VQRTERGV 68 Query: 65 YSAENLKLVPKSSN 78 + + L L+P S+ Sbjct: 69 QATQVLSLLPPESD 82 Score = 57.3 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G + D+FLH + +GL +L G+ + ++ G Sbjct: 107 RVKWFDKGKGFGFANVFGRRD---DIFLHMEVLRRSGLSDLAPGEALALRVIEG-KRGHM 162 Query: 66 SAEN 69 +AE Sbjct: 163 AAEV 166 >gi|291529654|emb|CBK95240.1| cold-shock DNA-binding protein family [Eubacterium rectale M104/1] Length = 66 Score = 70.4 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62 G +KW++ KGYGF+T E G D F+H SA+ S L VT+D D Sbjct: 2 TGKVKWFSNRKGYGFVT----GEDGQDYFVHFSAIESDKSFKTLHTNADVTFDVQVVD-- 55 Query: 63 GKYSAENLK 71 GK A +K Sbjct: 56 GKQYAVKVK 64 >gi|146197784|dbj|BAF57611.1| Y-Box factor protein [Dugesia japonica] Length = 178 Score = 70.4 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQNDA 61 G +KWYN KGYGFI + E DVF+H+SA+ +L E + V +D V+ Sbjct: 5 GKVKWYNVKKGYGFIHRDDVDE---DVFVHQSAISRCQPGKQKSLGEDEDVLFDVVKGSK 61 Query: 62 N 62 Sbjct: 62 G 62 >gi|282853550|ref|ZP_06262887.1| cold-shock DNA-binding domain protein [Propionibacterium acnes J139] gi|282583003|gb|EFB88383.1| cold-shock DNA-binding domain protein [Propionibacterium acnes J139] gi|314922101|gb|EFS85932.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL001PA1] gi|314965185|gb|EFT09284.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL082PA2] gi|315093944|gb|EFT65920.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL060PA1] gi|315104625|gb|EFT76601.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL050PA2] gi|327329475|gb|EGE71235.1| cold-shock domain protein [Propionibacterium acnes HL103PA1] Length = 127 Score = 70.4 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 1 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNTLKPGQKVDFGIVEGRR 55 Query: 62 NGKYSAENLKLVP 74 A +L++V Sbjct: 56 G--EQALSLQIVE 66 >gi|111182511|gb|ABH07676.1| cold-shock domain protein [Scophthalmus maximus] Length = 297 Score = 70.4 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97 Query: 61 ANGKYSAEN 69 G +A Sbjct: 98 -KGAEAANV 105 >gi|47220428|emb|CAG03208.1| unnamed protein product [Tetraodon nigroviridis] Length = 298 Score = 70.4 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 41 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 97 Query: 61 ANGKYSAEN 69 G +A Sbjct: 98 -KGAEAANV 105 >gi|302392725|ref|YP_003828545.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] gi|302204802|gb|ADL13480.1| cold-shock DNA-binding protein family [Acetohalobium arabaticum DSM 5501] Length = 67 Score = 70.4 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47 M+ G++KW++ +KG+GFI DDVF+H SA+A G +L Sbjct: 1 MILSGTVKWFDSNKGFGFIERPDE----DDVFVHYSAIAEDGFKDLD 43 >gi|73950970|ref|XP_855993.1| PREDICTED: similar to Nuclease sensitive element binding protein 1 (Y-box binding protein-1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB)... isoform [Canis familiaris] Length = 305 Score = 70.4 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGF+ ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 63 GTVKWFNVRNGYGFL---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119 Query: 61 ANGKYSAEN 69 G +A Sbjct: 120 -KGAEAANV 127 >gi|76364244|sp|P0C0F0|CSPA_STRPY RecName: Full=Major cold shock protein gi|1402783|gb|AAC80258.1| major cold-shock protein [Streptococcus pyogenes] Length = 45 Score = 70.0 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFI+ TE+G DVF H SA+ + G L EGQ V +D + Sbjct: 1 EKGFGFIS----TENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQR 45 >gi|167946065|ref|ZP_02533139.1| Cold-shock DNA-binding protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 61 Score = 70.0 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 G++KW++ KGYGFI E G D+F+H A+ G +L +G Sbjct: 1 TGTVKWFDSGKGYGFIERE----GGKDLFVHFRAIVGEGHVSLEDG 42 >gi|281352788|gb|EFB28372.1| hypothetical protein PANDA_005261 [Ailuropoda melanoleuca] Length = 276 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+GFI+ EGS DVF+H+S + G +L EG+ V + + ++ Sbjct: 57 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 116 Query: 60 DAN 62 Sbjct: 117 SKG 119 >gi|295136384|ref|YP_003587060.1| cold shock protein [Zunongwangia profunda SM-A87] gi|294984399|gb|ADF54864.1| cold shock protein [Zunongwangia profunda SM-A87] Length = 64 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KGYGFIT + ++G D+F+H + + L EG V Y V+ + Sbjct: 2 EGTVKFFNESKGYGFITND---DTGRDIFVHVTGIDGE---TLNEGDKVEY--VEKEGRK 53 Query: 64 KYSAENLKLV 73 +A+ ++++ Sbjct: 54 GLNADQVRVI 63 >gi|17533635|ref|NP_496366.1| Y-box family member (cey-1) [Caenorhabditis elegans] gi|3876637|emb|CAB04257.1| C. elegans protein F33A8.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 208 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI T++ +D+F+H++A+ + L +L + + V +D V+ Sbjct: 22 KGTVKWFNVKNGYGFI---NRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEG 78 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 79 -SKGLEAASV 87 >gi|304321239|ref|YP_003854882.1| cold shock protein [Parvularcula bermudensis HTCC2503] gi|303300141|gb|ADM09740.1| cold shock protein [Parvularcula bermudensis HTCC2503] Length = 173 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++ KGYGFIT E G DV +H S + +G EG +VT + ++++ G Sbjct: 15 RGFVKWFDQTKGYGFITDEA---GGRDVLIHSSCLKQSGRATAPEGAIVTCEAIESE-KG 70 Query: 64 KYSAENLKL 72 + + L Sbjct: 71 LQATRIINL 79 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW++ KGYGF+T +T + +D+F+H V +AGL L GQ + Y + Sbjct: 108 TVKWFSRAKGYGFLT---ATNANEDIFVHMEVVRAAGLSELQPGQRLRASYGRGTKGLLA 164 Query: 66 SA 67 +A Sbjct: 165 AA 166 >gi|114554895|ref|XP_513232.2| PREDICTED: protein lin-28 homolog A [Pan troglodytes] Length = 209 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF+ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 42 GICKWFNVRMGFGFLCMTARAGVALDPHRDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|284033793|ref|YP_003383724.1| cold-shock DNA-binding domain-containing protein [Kribbella flavida DSM 17836] gi|283813086|gb|ADB34925.1| cold-shock DNA-binding domain protein [Kribbella flavida DSM 17836] Length = 127 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF+ S E G DV++ A+ AG+ NL GQ V + V+ Sbjct: 1 MPVGKVKWYDSEKGFGFL----SKEEGGDVYVRAEAL-PAGVTNLKPGQKVEFGVVEGRK 55 Query: 62 NGKYSAENLKLVPK 75 A ++L+ Sbjct: 56 G--EQALQVRLIDP 67 >gi|167045316|gb|ABZ09974.1| putative cold-shock DNA-binding domain protein [uncultured marine crenarchaeote HF4000_APKG9P22] Length = 64 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 9/73 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI EG D+F+H++ V + +G V ++ + + Sbjct: 1 METGTVKWFNQTKGFGFIEREGEA---KDLFVHKTEVEG----TIRDGDKVEFELGETEK 53 Query: 62 NGKYSAENLKLVP 74 +A +K V Sbjct: 54 G--PNAVKVKRVE 64 >gi|150017771|ref|YP_001310025.1| cold-shock DNA-binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904236|gb|ABR35069.1| putative cold-shock DNA-binding domain protein [Clostridium beijerinckii NCIMB 8052] Length = 63 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N +KG+GFI EG DVF+H S++ +G ++ EG V +D + Sbjct: 1 MKTGTVKFFNSEKGFGFIEVEGE----KDVFVHSSSL--SGF-SIQEGDKVQFDVEKGTK 53 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 54 G--PQATNIQRV 63 >gi|110598385|ref|ZP_01386658.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] gi|110339994|gb|EAT58496.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] Length = 85 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 + +KW++ KGYGFI + + G+D+F+H SA+ S L + V ++ Sbjct: 1 MAISKVKWFDGKKGYGFI---LNPDGGEDIFVHFSAILSEQSFKVLNQDAEVDFELDTTQ 57 Query: 61 ANGKYSAENLKLVPKSSN 78 A+N++ + S Sbjct: 58 KG--LQAKNVRDISGISQ 73 >gi|1402761|gb|AAC80245.1| major cold-shock protein [Lactococcus lactis subsp. cremoris] gi|1402777|gb|AAC80255.1| major cold-shock protein [Staphylococcus epidermidis] Length = 45 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 EKGFGFIEVEGE----NDVFVHFSAINQEGYKSLEEGQSVEFEVVEGDR 45 >gi|194336044|ref|YP_002017838.1| cold-shock DNA-binding domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308521|gb|ACF43221.1| cold-shock DNA-binding domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 84 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 + +KW++ KGYGF+ + + G+D+F+H SA+ S L + V ++ + Sbjct: 1 MALSKVKWFDGKKGYGFL---LNPDGGEDIFVHFSAIQSEQSFKVLNQDAEVDFELDKTQ 57 Query: 61 ANGKYSAENLKLV 73 A+N++ V Sbjct: 58 KG--LQAKNVREV 68 >gi|117621225|ref|YP_857729.1| cold-shock protein, DNA-binding [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562632|gb|ABK39580.1| cold-shock protein, DNA-binding [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 214 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 8/74 (10%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTES--GDDVFLHRSAVASAGLFNLTE-GQLVTYDY 56 M ++G ++W N +G+GFI P+ G ++F+H SA+ S G +L + G+ V+Y Sbjct: 1 MRYQGRIVRW-NEARGFGFIAPDQGDGEPKGAELFVHISALQSDG--SLPKIGERVSYQL 57 Query: 57 VQNDANGKYSAENL 70 + +GK AE + Sbjct: 58 G-SGQDGKPRAEQV 70 >gi|120437418|ref|YP_863104.1| cold shock-like protein [Gramella forsetii KT0803] gi|117579568|emb|CAL68037.1| cold shock-like protein [Gramella forsetii KT0803] Length = 64 Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KGYGFIT + ++ D+F+H + + L EG V Y+ + Sbjct: 2 QGTVKFFNESKGYGFITND---DTKRDIFVHITGLNGE---TLQEGDRVEYEETEGKKG- 54 Query: 64 KYSAENLKLVP 74 +A ++++ Sbjct: 55 -VNATEVRVIE 64 >gi|83592002|ref|YP_425754.1| cold-shock DNA-binding protein family protein [Rhodospirillum rubrum ATCC 11170] gi|83574916|gb|ABC21467.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC 11170] Length = 68 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+I W++ GYGFI P+ + G D+ + A+ +GL +L +GQ V Y + Sbjct: 1 MLTGTITWFDTINGYGFIRPD---DGGGDIAVDMPALDRSGLRSLRDGQRVAYRLTRPRF 57 Query: 62 NGKYS 66 G + Sbjct: 58 GGAMA 62 >gi|295689096|ref|YP_003592789.1| cold-shock DNA-binding domain-containing protein [Caulobacter segnis ATCC 21756] gi|295430999|gb|ADG10171.1| cold-shock DNA-binding domain protein [Caulobacter segnis ATCC 21756] Length = 197 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KGYGFI P+ ++G DV LH +++ + G EG ++ D V+ G Sbjct: 20 GRVKWFDAGKGYGFIIPDDPGQTGLKDVLLHVTSLRNCGRETAMEGAVIVCDVVRR-PKG 78 Query: 64 KYSAENLKLVPKSS 77 +E + L S+ Sbjct: 79 WQVSEVVNLDESSA 92 Score = 61.5 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 R +KW+N KGYGF+ + D+F+H + GL +L G V + + Sbjct: 129 AERAKVKWFNRTKGYGFVVRDAEP---GDIFVHIETLRRGGLEDLQPGDDVLVRFARG-P 184 Query: 62 NGKYSAE 68 G AE Sbjct: 185 KGLVVAE 191 >gi|73950974|ref|XP_856066.1| PREDICTED: similar to Nuclease sensitive element binding protein 1 (Y-box binding protein-1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB)... isoform [Canis familiaris] Length = 314 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGF+ ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 63 GTVKWFNVRNGYGFL---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119 Query: 61 ANGKYSAEN 69 G +A Sbjct: 120 -KGAEAANV 127 >gi|227876361|ref|ZP_03994473.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris ATCC 35243] gi|269975926|ref|ZP_06182930.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris 28-1] gi|306817253|ref|ZP_07450999.1| cold-shock domain family protein [Mobiluncus mulieris ATCC 35239] gi|307700373|ref|ZP_07637412.1| putative cold shock protein [Mobiluncus mulieris FB024-16] gi|227842902|gb|EEJ53099.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris ATCC 35243] gi|269935754|gb|EEZ92284.1| cold-shock DNA-binding domain protein [Mobiluncus mulieris 28-1] gi|304649933|gb|EFM47212.1| cold-shock domain family protein [Mobiluncus mulieris ATCC 35239] gi|307614358|gb|EFN93588.1| putative cold shock protein [Mobiluncus mulieris FB024-16] Length = 125 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ DKG+GFIT G +VFLH SA+ G+ G V Y + + Sbjct: 1 MPNGKVKWYDADKGFGFIT----GSDGIEVFLHASAL-PPGVTEPKAGTRVEYSVI-DGK 54 Query: 62 NGKYSAENLKLVPK 75 G A N+ ++ + Sbjct: 55 RG-AQAMNVTILEE 67 >gi|258593069|emb|CBE69380.1| Cold shock protein, DNA binding [NC10 bacterium 'Dutch sediment'] Length = 67 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW+N K +GFI + + G D F+H S V G E V +D Q+D G Sbjct: 2 KGKVKWFNVTKRFGFIVRD---DGGQDAFVHASDVE--GGATPRENDDVEFDLGQDD-RG 55 Query: 64 KYSAENLKLV 73 + A ++++ Sbjct: 56 RAKAVRVRIL 65 >gi|159162382|pdb|1H95|A Chain A, Solution Structure Of The Single-Stranded Dna-Binding Cold Shock Domain (Csd) Of Human Y-Box Protein 1 (Yb1) Determined By Nmr (10 Lowest Energy Structures) Length = 79 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 11 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 67 Query: 61 ANGKYSAEN 69 G +A Sbjct: 68 -KGAEAANV 75 >gi|317509214|ref|ZP_07966835.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316252424|gb|EFV11873.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 145 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 6/65 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ DKG+GF+T E GDDV++ SA+ AGL L GQ+V + + Sbjct: 5 VPTGKVKWYSADKGFGFLTQE----DGDDVYVGSSAL-PAGLEGLKPGQIVEFGMA-DGR 58 Query: 62 NGKYS 66 G + Sbjct: 59 RGPQA 63 >gi|326936337|ref|XP_003214212.1| PREDICTED: protein lin-28 homolog A-like, partial [Meleagris gallopavo] Length = 191 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ +S DVF+H+S + G +L EG+ V + + ++ Sbjct: 25 GICKWFNVRMGFGFLSMTAKGGATLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSS 84 Query: 61 AN 62 Sbjct: 85 KG 86 >gi|291045286|ref|NP_001166916.1| protein lin-28 homolog A [Felis catus] gi|73950555|ref|XP_854985.1| PREDICTED: similar to RNA-binding protein LIN-28 [Canis familiaris] gi|264670123|gb|ACY72346.1| lin-28-like protein [Felis catus] Length = 206 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97 Query: 61 AN 62 Sbjct: 98 KG 99 >gi|229816847|ref|ZP_04447129.1| hypothetical protein BIFANG_02095 [Bifidobacterium angulatum DSM 20098] gi|229785863|gb|EEP21977.1| hypothetical protein BIFANG_02095 [Bifidobacterium angulatum DSM 20098] Length = 129 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++W++ KGYGFI +E G+DVFL +A+ AG L + V Y + Sbjct: 1 MPTGRVRWFDAAKGYGFIA----SEKGEDVFLPAAAL-PAGTTTLRKNAKVEYAVIAGRR 55 Query: 62 NGKYSAENLKLV 73 A ++KL+ Sbjct: 56 G--PQAMDVKLI 65 >gi|227529020|ref|ZP_03959069.1| major cold shock protein [Lactobacillus vaginalis ATCC 49540] gi|227351032|gb|EEJ41323.1| major cold shock protein [Lactobacillus vaginalis ATCC 49540] Length = 71 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K ++ +KG+GFI E +F+H + + GL LT G+ V VQ Sbjct: 1 MLQGTVKSFDREKGWGFIDVPHEGE----IFVHYTGIEGHGLRILTPGERVALVIVQG-K 55 Query: 62 NGKYSAENLKL 72 G +A +L Sbjct: 56 RGPQAAHVQRL 66 >gi|157118310|ref|XP_001653164.1| Y-box binding protein [Aedes aegypti] gi|108883287|gb|EAT47512.1| Y-box binding protein [Aedes aegypti] Length = 304 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G +KW+N GYGFI + E DVF+H+SA+A + ++ +G++V +D V Sbjct: 16 TGVVKWFNVKSGYGFINRGDTQE---DVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIG 72 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 73 E-KGNEAANV 81 >gi|90419542|ref|ZP_01227452.1| cold shock family protein [Aurantimonas manganoxydans SI85-9A1] gi|90336479|gb|EAS50220.1| cold shock family protein [Aurantimonas manganoxydans SI85-9A1] Length = 192 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KG+GFI P+ + G D+ LH + + G EG V + Q + Sbjct: 28 GHIKWFDVSKGFGFIVPD---DGGADILLHVTCLRRDGHATALEGARVVCEVQQGERG 82 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KGYGF+T + E +D+F+H + G+ L GQ V + Q D G+ + Sbjct: 122 VKWFNRTKGYGFLT---TGEGTEDIFIHMETLRRFGMTELRPGQDVLVRFGQGD-KGRMA 177 Query: 67 AE 68 AE Sbjct: 178 AE 179 >gi|301755044|ref|XP_002913351.1| PREDICTED: protein lin-28 homolog A-like [Ailuropoda melanoleuca] gi|281351598|gb|EFB27182.1| hypothetical protein PANDA_001150 [Ailuropoda melanoleuca] Length = 206 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97 Query: 61 AN 62 Sbjct: 98 KG 99 >gi|91217017|ref|ZP_01253980.1| cold shock protein [Psychroflexus torquis ATCC 700755] gi|91184888|gb|EAS71268.1| cold shock protein [Psychroflexus torquis ATCC 700755] Length = 63 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K++N KGYGFIT + E+G+D+F+H + + +L EG V Y+ + Sbjct: 2 QGKVKFFNESKGYGFITND---ETGEDIFVHVTGLNGE---SLNEGDEVEYNEEEGRKG- 54 Query: 64 KYSAENLKLV 73 +A +++L+ Sbjct: 55 -MNASDVRLI 63 >gi|56754487|gb|AAW25431.1| unknown [Schistosoma japonicum] Length = 104 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G +KW+N GYGFI ++ D+F+H+SA++ +L EG+ V + V+ Sbjct: 27 KGVVKWFNVKAGYGFI---NRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVVEG 83 Query: 60 DAN 62 D Sbjct: 84 DKG 86 >gi|94732354|emb|CAK04626.1| novel protein (zgc:55584) [Danio rerio] Length = 179 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ EG DVF+H+S + G +L EG+ V + + ++ Sbjct: 30 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSS 89 Query: 61 AN 62 Sbjct: 90 KG 91 >gi|82802829|gb|ABB92460.1| rcNSEP1 [Homo sapiens] Length = 319 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H +A L ++ +G+ V +D V+ + Sbjct: 57 GTVKWFNVRNGYGFI---HRNDTKEDVFVHHTAXKKNNPRKYLRSVGDGEXVEFDVVEGE 113 Query: 61 ANGKYSAENLK 71 K A N+ Sbjct: 114 KGAK--AANVT 122 >gi|3121935|sp|Q56922|CSPA_YEREN RecName: Full=Major cold shock protein gi|1402789|gb|AAC80259.1| major cold-shock protein [Yersinia enterocolitica] Length = 46 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 DKG+GFITP + DVF+H SA+ S L EGQ V + Sbjct: 1 DKGFGFITP---ADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSIENGAK 46 >gi|289770129|ref|ZP_06529507.1| cold-shock DNA-binding domain-containing protein [Streptomyces lividans TK24] gi|289700328|gb|EFD67757.1| cold-shock DNA-binding domain-containing protein [Streptomyces lividans TK24] Length = 60 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 28 GDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 G DVF+H SA+ G L EGQ V ++ Q A+ ++L Sbjct: 16 GADVFVHYSAIQMDGYRTLEEGQRVEFEISQGQKG--PQADMVRL 58 >gi|307209281|gb|EFN86372.1| Y-box factor-like protein [Harpegnathos saltator] Length = 278 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV----ASAGLFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI + E DVF+H+SA+ + ++ +G++V +D V Sbjct: 25 TGTVKWFNVKSGYGFINRNDTRE---DVFVHQSAIIKNNPRKAVRSVGDGEVVEFDVVIG 81 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 82 E-KGHEAANV 90 >gi|313214830|emb|CBY41075.1| unnamed protein product [Oikopleura dioica] gi|313231198|emb|CBY08313.1| unnamed protein product [Oikopleura dioica] Length = 292 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 GS+KW+N GYGFI + + E DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 42 TGSVKWFNVRNGYGFIHRDDTDE---DVFVHQTAIVKNNPKKFLRSVGDGEKVVFDVVEG 98 Query: 60 DANGKYSAEN 69 G +A Sbjct: 99 Q-KGNEAANV 107 >gi|86141013|ref|ZP_01059572.1| cold shock protein [Leeuwenhoekiella blandensis MED217] gi|85832955|gb|EAQ51404.1| cold shock protein [Leeuwenhoekiella blandensis MED217] Length = 63 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 7/66 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KGYGFIT + ++G D+F+H + + L EG V Y + G Sbjct: 2 KGTVKFFNESKGYGFITND---DTGKDIFVHATGLNGE---VLEEGDQVEY-IEEEGRKG 54 Query: 64 KYSAEN 69 +A+ Sbjct: 55 MVAAQV 60 >gi|326384174|ref|ZP_08205856.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] gi|326197039|gb|EGD54231.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] Length = 139 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ KG+GF++ G+DV++ +A+ + + L GQ V +D Sbjct: 1 MPTGRVKWYDSAKGFGFLSQ----TDGEDVYVRANALPAD-VPELKVGQKVEFDMA-AGR 54 Query: 62 NGKYSAENLKLVPKSS 77 G + L P S Sbjct: 55 RGPQALRVTVLEPAPS 70 >gi|291399525|ref|XP_002716148.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus] gi|291409216|ref|XP_002720890.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus] Length = 209 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|110763831|ref|XP_393344.3| PREDICTED: hypothetical protein LOC409854 [Apis mellifera] Length = 279 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H+SA+ + ++ +G++V +D V Sbjct: 25 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVIG 81 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 82 E-KGHEAANV 90 >gi|167045315|gb|ABZ09973.1| putative cold-shock DNA-binding domain protein [uncultured marine crenarchaeote HF4000_APKG9P22] Length = 64 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 9/73 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI EG D+F+H++ + + +G V ++ + + Sbjct: 1 METGTVKWFNQSKGFGFIEREGEA---KDLFVHQTELEGE----IHDGDKVEFELGETEK 53 Query: 62 NGKYSAENLKLVP 74 +A +K V Sbjct: 54 G--PNAVKVKRVE 64 >gi|82654186|ref|NP_001026944.2| protein lin-28 homolog A [Gallus gallus] gi|116248185|sp|Q45KJ5|LN28A_CHICK RecName: Full=Protein lin-28 homolog A; Short=Lin-28A gi|82622705|gb|AAZ38895.2| LIN28A [Gallus gallus] Length = 202 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ +S DVF+H+S + G +L EG+ V + + ++ Sbjct: 36 GICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSS 95 Query: 61 AN 62 Sbjct: 96 KG 97 >gi|308153249|ref|NP_001015806.2| protein lin-28 homolog A isoform 1 [Xenopus (Silurana) tropicalis] Length = 188 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF+T E+ DVF+H+S + G +L EG+ V + + ++ Sbjct: 29 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSS 88 Query: 61 AN 62 Sbjct: 89 KG 90 >gi|302530552|ref|ZP_07282894.1| cold-shock DNA-binding domain-containing protein [Streptomyces sp. AA4] gi|302439447|gb|EFL11263.1| cold-shock DNA-binding domain-containing protein [Streptomyces sp. AA4] Length = 139 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ +KG+GF+T + G DV++ ++A+ G+ L GQ + + + Sbjct: 12 VPTGKVKWYDAEKGFGFVTQD----GGADVYIRKAAL-PHGVEGLKAGQRLEFGVA-DGR 65 Query: 62 NGKYSAENLKLVPKSS 77 G + L P S Sbjct: 66 RGPQALSVRLLDPPPS 81 >gi|73950968|ref|XP_848371.1| PREDICTED: similar to Nuclease sensitive element binding protein 1 (Y-box binding protein-1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB)... isoform [Canis familiaris] gi|73950976|ref|XP_856109.1| PREDICTED: similar to Nuclease sensitive element binding protein 1 (Y-box binding protein-1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB)... isoform [Canis familiaris] Length = 326 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGF+ ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 63 GTVKWFNVRNGYGFL---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 119 Query: 61 ANGKYSAEN 69 G +A Sbjct: 120 -KGAEAANV 127 >gi|55820885|ref|YP_139327.1| cold shock protein A [Streptococcus thermophilus LMG 18311] gi|55736870|gb|AAV60512.1| cold shock protein A [Streptococcus thermophilus LMG 18311] Length = 69 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G+I W+N DKG GFI + DVF + ++ EGQ VT+D Sbjct: 4 MNKGTINWFNADKGCGFI----MADDMQDVFAYLISIQGNDFKKYDEGQKVTFDIKMTSR 59 Query: 62 N 62 Sbjct: 60 G 60 >gi|126328607|ref|XP_001363469.1| PREDICTED: similar to RNA-binding protein LIN-28 [Monodelphis domestica] Length = 205 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 39 GICKWFNVRMGFGFLSMTARAGVALDQPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 98 Query: 61 AN 62 Sbjct: 99 KG 100 >gi|296207133|ref|XP_002750510.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus] Length = 209 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|313835454|gb|EFS73168.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL037PA2] gi|314928529|gb|EFS92360.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL044PA1] gi|314970448|gb|EFT14546.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL037PA3] Length = 135 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 9 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNALKPGQKVDFGIVEGRR 63 Query: 62 NGKYSAENLKLVPKSSN 78 A +L++V ++ Sbjct: 64 G--EQALSLQIVETPAS 78 >gi|178056460|ref|NP_001116605.1| protein lin-28 homolog A [Sus scrofa] gi|169627101|gb|ACA58282.1| LIN28 [Sus scrofa] Length = 205 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97 Query: 61 AN 62 Sbjct: 98 KG 99 >gi|330943369|gb|EGH45738.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi str. 1704B] Length = 41 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 3/41 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42 G++KW+N +KG+GFITP+G GDD+F+H A+ S G Sbjct: 4 RQTGTVKWFNDEKGFGFITPQG---GGDDLFVHFKAIQSDG 41 >gi|26344984|dbj|BAC36141.1| unnamed protein product [Mus musculus] Length = 361 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +D F+H++ + L ++ +G+ V +D + + Sbjct: 85 GTVKWFNVRNGYGFI---NRNDTKEDAFVHQTVIKKNNPRKYLRSVGDGETVEFDVGEGE 141 Query: 61 ANGKYSAEN 69 G +A Sbjct: 142 -KGAEAANV 149 >gi|163731974|ref|ZP_02139420.1| cold shock protein [Roseobacter litoralis Och 149] gi|161394272|gb|EDQ18595.1| cold shock protein [Roseobacter litoralis Och 149] Length = 178 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GF+ + G D+ LH + + + G ++ +G V + VQ G Sbjct: 13 GVVKWFDPVKGFGFVVADA---GGPDILLHVNVLRNFGQSSVADGARVELE-VQRTDRGV 68 Query: 65 YSAENLKLVPKSSN 78 + + L L+P S+ Sbjct: 69 QATQVLSLLPPDSD 82 Score = 57.3 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G + D+FLH + +GL +L G+ + ++ G Sbjct: 107 RVKWFDKGKGFGFANVFGRRD---DIFLHMEVLRRSGLSDLAPGEALALRVIEG-KRGHM 162 Query: 66 SAEN 69 +AE Sbjct: 163 AAEV 166 >gi|3121928|sp|Q51929|CSPA_PHOMO RecName: Full=Major cold shock protein gi|1402763|gb|AAC80249.1| major cold-shock protein [Photobacterium leiognathi subsp. mandapamensis] Length = 46 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GF+T G DVF+H A+AS G LTEGQ V++D Q Sbjct: 1 EKGFGFLTQ---NNGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQGQK 46 >gi|291394002|ref|XP_002713355.1| PREDICTED: DNA-binding protein B-like [Oryctolagus cuniculus] Length = 320 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 57 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLGSVGDGETVEFDVVEGE 113 Query: 61 AN 62 Sbjct: 114 KG 115 >gi|62858881|ref|NP_001016266.1| protein lin-28 homolog A isoform 2 [Xenopus (Silurana) tropicalis] gi|82230981|sp|Q5EB47|LN28A_XENTR RecName: Full=Protein lin-28 homolog A; Short=Lin-28A gi|59809410|gb|AAH90084.1| lin-28 homolog [Xenopus (Silurana) tropicalis] gi|89266719|emb|CAJ82571.1| lin-28 homolog (C. elegans) [Xenopus (Silurana) tropicalis] gi|195539672|gb|AAI68066.1| lin-28 homolog (C. elegans) [Xenopus (Silurana) tropicalis] Length = 195 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF+T E+ DVF+H+S + G +L EG+ V + + ++ Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSS 95 Query: 61 AN 62 Sbjct: 96 KG 97 >gi|325106181|ref|YP_004275835.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM 12145] gi|324975029|gb|ADY54013.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM 12145] Length = 63 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KG+GFITP GDD+F+H S + + + E +V ++ V+N Sbjct: 1 MKEGKVKFFNETKGFGFITP---LNGGDDIFVHSSGLETE----IRENDVVVFE-VENGR 52 Query: 62 NGKYSAENLKL 72 G +A N++L Sbjct: 53 KG-LNAVNVRL 62 >gi|160879311|ref|YP_001558279.1| cold-shock DNA-binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160427977|gb|ABX41540.1| cold-shock DNA-binding domain protein [Clostridium phytofermentans ISDg] Length = 70 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 7/69 (10%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDA 61 + G++KWY+ ++GYGF+ ST G DVFLH S + G + EG+ + +D ++ + Sbjct: 4 YTGTVKWYDSERGYGFV----STNDGRDVFLHHSQIKEKGFDKEVHEGESIGFDIIEQEK 59 Query: 62 NGKYSAENL 70 +A N+ Sbjct: 60 G--PAAINV 66 >gi|300796242|ref|NP_001179986.1| protein lin-28 homolog A [Bos taurus] gi|297472202|ref|XP_002685742.1| PREDICTED: lin-28 homolog [Bos taurus] gi|296490058|gb|DAA32171.1| lin-28 homolog [Bos taurus] Length = 205 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97 Query: 61 AN 62 Sbjct: 98 KG 99 >gi|114706186|ref|ZP_01439089.1| cold shock protein [Fulvimarina pelagi HTCC2506] gi|114539032|gb|EAU42153.1| cold shock protein [Fulvimarina pelagi HTCC2506] Length = 191 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KG+GFI P+ + DV +H + + G EG V + VQ G Sbjct: 29 GHIKWFDVAKGFGFIVPD---DESADVLIHVTCLRRDGYATALEGARVVCE-VQRSERGL 84 Query: 65 YSAENLKLVPKSS 77 + L + +S Sbjct: 85 SAFRVLSMDSSTS 97 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 8/68 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQNDA 61 ++KW+N KGYGF+T + E+ +D+F+H + G+ L GQ V Y Sbjct: 120 TATVKWFNRTKGYGFLT---TGENDEDIFIHMETLRRFGMTELRLGQEVKVRYGI---GR 173 Query: 62 NGKYSAEN 69 GK +AE Sbjct: 174 KGKMAAEV 181 >gi|257066728|ref|YP_003152984.1| cold-shock DNA-binding domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798608|gb|ACV29263.1| cold-shock DNA-binding domain protein [Anaerococcus prevotii DSM 20548] Length = 67 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 8/73 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQND 60 ++RG +K ++ +G+GFI E G+D+F+H S + S L GQ V ++ + Sbjct: 1 MNRGKVKTFDNKRGFGFIEWE-----GEDLFVHYSDIESDTSFKKLYPGQAVEFEKIDAP 55 Query: 61 ANGKYSAENLKLV 73 A ++++ Sbjct: 56 RG--AQAVKVRVI 66 >gi|90424288|ref|YP_532658.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90106302|gb|ABD88339.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB18] Length = 220 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGFI P+ DV LH + + G EG + + VQ A G Sbjct: 56 GVIKWFDASKGYGFIVPD---NGSPDVLLHVTVLRRDGYQTAYEGARIICECVQR-AKGY 111 Query: 65 YSAENLKLVPKSS 77 + + + ++ Sbjct: 112 QAFRVVSMDESTA 124 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59 + R +KW+N +G+GF+T E D+F+H + G+ L GQ LV + Sbjct: 145 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRFG---P 198 Query: 60 DANGKYSAE 68 + G +AE Sbjct: 199 GSKGMMAAE 207 >gi|147903687|ref|NP_001080918.1| protein lin-28 homolog A [Xenopus laevis] gi|82243501|sp|Q8JHC4|LN28A_XENLA RecName: Full=Protein lin-28 homolog A; Short=Lin-28A gi|21842301|gb|AAM77750.1|AF521098_1 RNA-binding protein LIN-28A [Xenopus laevis] gi|213623350|gb|AAI69625.1| RNA-binding protein LIN-28A [Xenopus laevis] gi|213626540|gb|AAI69597.1| RNA-binding protein LIN-28A [Xenopus laevis] Length = 195 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF+T E+ DVF+H+S + G +L EG+ V + + ++ Sbjct: 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPLDVFVHQSKLHMEGFRSLKEGESVEFTFKKSS 95 Query: 61 AN 62 Sbjct: 96 KG 97 >gi|327440390|dbj|BAK16755.1| cold shock protein [Solibacillus silvestris StLB046] Length = 77 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 8/79 (10%) Query: 1 MVH--RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M H RG K ++ ++G+G+I+ EG DV++H S++ G +LT G+ V++D + Sbjct: 1 MRHDIRGVCKIFDDEEGWGWISIEGEA----DVWVHFSSIQMDGFKSLTIGEAVSFDLEE 56 Query: 59 NDANGKYS--AENLKLVPK 75 N + S A N+K + K Sbjct: 57 NPNLKEQSRRAVNVKKLAK 75 >gi|308498439|ref|XP_003111406.1| hypothetical protein CRE_03641 [Caenorhabditis remanei] gi|308240954|gb|EFO84906.1| hypothetical protein CRE_03641 [Caenorhabditis remanei] Length = 264 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KWY+ + YGFI+ + + DVF+H++A+A + L L + + V +D V+ Sbjct: 63 QGKVKWYSVLRRYGFISRD---DGEKDVFVHQTAIAKSDTEKFYLRTLADEEEVLFDLVE 119 Query: 59 NDANGKYSAEN 69 NG +A Sbjct: 120 G-KNGPEAANV 129 >gi|224134074|ref|XP_002327749.1| predicted protein [Populus trichocarpa] gi|222836834|gb|EEE75227.1| predicted protein [Populus trichocarpa] Length = 235 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62 G + ++ KG+GFI P+ D+F+H SA+ S G L E +V + + ND Sbjct: 15 TGRVVRFSDKKGFGFIKPDAGD---KDLFVHHSAIKSDGGYRTLYEDDVVEFTILLNDD- 70 Query: 63 GKYSAENLK 71 KY A ++ Sbjct: 71 -KYQAVDVT 78 >gi|220921873|ref|YP_002497174.1| cold-shock DNA-binding domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219946479|gb|ACL56871.1| cold-shock DNA-binding domain protein [Methylobacterium nodulans ORS 2060] Length = 189 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KG+GFI P+ DV LH + + G + +EG V + VQ A G Sbjct: 26 GRIKWFDVAKGFGFIVPD---NGAPDVLLHVTCLRRDGHQSASEGARVVVEAVQR-ARGW 81 Query: 65 YSAENLKL 72 + + L Sbjct: 82 QAFRVISL 89 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + +KW+N +G+GF++ + D+F+H + G+ L G+ V V+ + Sbjct: 115 LETAVVKWFNRLRGFGFLSR---GDGTPDIFVHMETLRRYGIAELKPGEKV---MVRYGD 168 Query: 60 DANGKYSAEN 69 + G +AE Sbjct: 169 GSKGLMAAEV 178 >gi|149695055|ref|XP_001504139.1| PREDICTED: RNA-binding protein LIN-28 [Equus caballus] Length = 205 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97 Query: 61 AN 62 Sbjct: 98 KG 99 >gi|13375938|ref|NP_078950.1| protein lin-28 homolog A [Homo sapiens] gi|74752750|sp|Q9H9Z2|LN28A_HUMAN RecName: Full=Protein lin-28 homolog A; Short=Lin-28A; AltName: Full=Zinc finger CCHC domain-containing protein 1 gi|21842304|gb|AAM77751.1|AF521099_1 RNA-binding protein LIN-28 [Homo sapiens] gi|10433955|dbj|BAB14075.1| unnamed protein product [Homo sapiens] gi|20306208|gb|AAH28566.1| LIN28 protein [Homo sapiens] gi|56206248|emb|CAI21500.1| lin-28 homolog (C. elegans) [Homo sapiens] gi|119628219|gb|EAX07814.1| lin-28 homolog (C. elegans), isoform CRA_a [Homo sapiens] gi|123993445|gb|ABM84324.1| lin-28 homolog (C. elegans) [synthetic construct] gi|124000419|gb|ABM87718.1| lin-28 homolog (C. elegans) [synthetic construct] gi|261860154|dbj|BAI46599.1| lin-28 homolog [synthetic construct] Length = 209 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|240849145|ref|NP_001155549.1| Y-box protein Ct-p40-like [Acyrthosiphon pisum] gi|239788387|dbj|BAH70879.1| ACYPI003867 [Acyrthosiphon pisum] Length = 305 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G +KW+N GYGFI ++ +D+F+H+SA+ + ++ +G+ V +D V+ Sbjct: 29 TGVVKWFNVKSGYGFI---NRNDTKEDIFVHQSAIIKNNPKKIVRSVGDGETVEFDVVEG 85 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 86 E-KGHEAANV 94 >gi|297665898|ref|XP_002811262.1| PREDICTED: protein lin-28 homolog A-like [Pongo abelii] Length = 209 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|227499876|ref|ZP_03929969.1| cold shock protein CspC [Anaerococcus tetradius ATCC 35098] gi|227217985|gb|EEI83258.1| cold shock protein CspC [Anaerococcus tetradius ATCC 35098] Length = 68 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 8/75 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60 +++G +K ++ +G+GFI SGDD+F+H + + + L GQ V ++ Q Sbjct: 1 MNKGEVKLFDNKRGFGFI-----KWSGDDLFVHYTDIEADDDYKKLFAGQKVEFEIKQAP 55 Query: 61 ANGKYSAENLKLVPK 75 A +K++ Sbjct: 56 RG--PQAIRVKIIED 68 >gi|260062739|ref|YP_003195819.1| Cold shock protein [Robiginitalea biformata HTCC2501] gi|88784307|gb|EAR15477.1| Cold shock protein [Robiginitalea biformata HTCC2501] Length = 63 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 10/71 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KGYGFIT G DVF+H S + + E V ++ Q Sbjct: 1 MQKGTVKFFNESKGYGFIT----GVEGKDVFVHASGLEEE----IRENDEVYFEVEQGQK 52 Query: 62 NGKYSAENLKL 72 SA N+++ Sbjct: 53 G--PSAVNVRI 61 >gi|326802047|ref|YP_004319866.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] gi|326552811|gb|ADZ81196.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] Length = 63 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +K++N KG+GFITP + G ++F+H S + + E V+++ Q Sbjct: 1 MQKGIVKFFNETKGFGFITP---QDGGREIFVHSSGLK----DRIRENDDVSFEVQQGQK 53 Query: 62 NGKYSAENLKLV 73 +A N+KL+ Sbjct: 54 G--PNAVNVKLI 63 >gi|332521005|ref|ZP_08397465.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4] gi|332043535|gb|EGI79731.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4] Length = 63 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFIT EGS D F+H S + + + EG V +D + Sbjct: 1 MAQGTVKFFNDSKGFGFITEEGSD---KDHFVHISGL----IDEVREGDAVEFDLQEGRK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--MNAVNVKVI 63 >gi|284007581|emb|CBA73141.1| cold shock protein [Arsenophonus nasoniae] Length = 80 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ +GYGFI+P G D++++R A+A+ L EGQ V + +N A Sbjct: 12 LQMGRVKWFDVKEGYGFISP---VNGGQDIYVNRRAIANTKNKWLKEGQCVEFSITRN-A 67 Query: 62 NGKYSAENL 70 G +A+ + Sbjct: 68 YGIAAADVI 76 >gi|308510156|ref|XP_003117261.1| CRE-CEY-1 protein [Caenorhabditis remanei] gi|308242175|gb|EFO86127.1| CRE-CEY-1 protein [Caenorhabditis remanei] Length = 202 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI T++ +D+F+H++A+ + L +L + + V +D V+ Sbjct: 22 KGTVKWFNVKNGYGFI---NRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEG 78 Query: 60 DANGKYSAENLK 71 A N+ Sbjct: 79 SKG--LEASNVT 88 >gi|332245102|ref|XP_003271702.1| PREDICTED: protein lin-28 homolog A-like [Nomascus leucogenys] Length = 209 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|328908285|gb|EGG28044.1| cold-shock DNA-binding domain protein [Propionibacterium sp. P08] Length = 127 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++Y+ KG+GF+T + G DV+++ SA+ AG+ L GQ V + V+ Sbjct: 1 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNASAL-PAGVNALKPGQKVDFGIVEGRR 55 Query: 62 NGKYSAENLKLVPKSSN 78 A +L++V ++ Sbjct: 56 G--EQALSLQIVETPAS 70 >gi|125838843|ref|XP_001340141.1| PREDICTED: protein lin-28 homolog A-like [Danio rerio] Length = 198 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFI---TPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF+ T +G DVF+H+S + G +L EG+ V + + ++ Sbjct: 33 GVCKWFNVRMGFGFLSMNTRDGVPLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSS 92 Query: 61 AN 62 Sbjct: 93 KG 94 >gi|294791478|ref|ZP_06756635.1| cold-shock domain family protein [Scardovia inopinata F0304] gi|294457949|gb|EFG26303.1| cold-shock domain family protein [Scardovia inopinata F0304] Length = 129 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G I+W++ KGYGFIT ++ G+DVFL ++A+ AG+ L +G V + + + Sbjct: 1 MPSGKIRWFDAKKGYGFIT----SDDGEDVFLPKTAL-PAGISKLRKGAKVEFSRI-DSR 54 Query: 62 NGKYSAENLKLVPKS 76 G A +L +V + Sbjct: 55 RGPQ-AMDLVVVGPA 68 >gi|170031766|ref|XP_001843755.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167870926|gb|EDS34309.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 247 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 7/65 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N G+GFIT ++G+D+F+H+S++ + ++ EG++V + + Sbjct: 53 TGTVKWFNVKDGFGFITRH---DTGEDLFVHQSSILRPNSRHSVRSVGEGEVVEFGVIAT 109 Query: 60 DANGK 64 G Sbjct: 110 KVTGP 114 >gi|46329818|gb|AAH68304.1| Lin-28 homolog (C. elegans) [Mus musculus] Length = 209 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|72008824|ref|XP_785816.1| PREDICTED: similar to Y-Box factor [Strongylocentrotus purpuratus] gi|115974523|ref|XP_001178393.1| PREDICTED: similar to Y-Box factor [Strongylocentrotus purpuratus] Length = 326 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI + + E DVF+H+SA+ ++ +G++V +D V+ Sbjct: 26 GTVKWFNVKNGYGFINRDDTKE---DVFVHQSAIVRNNPRKYQRSVGDGEVVEFDVVEGT 82 Query: 61 ANGKYSAEN 69 G +A Sbjct: 83 -KGNEAARV 90 >gi|291224890|ref|XP_002732435.1| PREDICTED: cold shock domain protein A short-like [Saccoglossus kowalevskii] Length = 283 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 26 GTVKWFNVKNGYGFI---NRNDTNEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 82 Query: 61 ANGKYSAEN 69 G +A Sbjct: 83 -KGNEAANV 90 >gi|1402765|gb|AAC80248.1| major cold-shock protein [Pediococcus pentosaceus] Length = 45 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KG+GFI EG +DVF+H SA+ G +L EGQ V ++ V+ D Sbjct: 1 EKGFGFIEVEGE----NDVFVHVSAINQDGYKSLEEGQSVEFEVVEGDR 45 >gi|22003878|ref|NP_665832.1| protein lin-28 homolog A [Mus musculus] gi|81914711|sp|Q8K3Y3|LN28A_MOUSE RecName: Full=Protein lin-28 homolog A; Short=Lin-28A; AltName: Full=Testis-expressed protein 17 gi|21842298|gb|AAM77749.1|AF521097_1 RNA-binding protein LIN-28 [Mus musculus] gi|126540562|emb|CAM46107.1| lin-28 homolog (C. elegans) [Mus musculus] gi|148698092|gb|EDL30039.1| lin-28 homolog (C. elegans) [Mus musculus] Length = 209 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|187779634|ref|ZP_02996107.1| hypothetical protein CLOSPO_03230 [Clostridium sporogenes ATCC 15579] gi|187773259|gb|EDU37061.1| hypothetical protein CLOSPO_03230 [Clostridium sporogenes ATCC 15579] Length = 69 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60 +H G +KW++ ++GYGFI S +G DV++H V +L EG+ V +D ++ + Sbjct: 3 MHTGIVKWFDNERGYGFI----SGNNGKDVYVHSMQVKEKTHNKDLHEGEEVLFDIIERE 58 Query: 61 ANGKYSAENLKLV 73 A N++ + Sbjct: 59 KG--PVAINVQKL 69 >gi|324511273|gb|ADY44699.1| Y-box factor [Ascaris suum] Length = 269 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 G +KWY+ YGFI + + +DVF+H++A+A + L +L EG+ V +D V+ Sbjct: 79 TGKVKWYSVRYHYGFIARDD--DVANDVFVHQTAIAKSRMVKYYLRSLEEGEEVLFDIVE 136 Query: 59 NDANGKYSAEN 69 G +A Sbjct: 137 G-KQGPEAANV 146 >gi|22901740|gb|AAN10049.1| Y-box protein Ct-p40 [Chironomus tentans] Length = 264 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ D+F+H+SA+ + ++ +G++V +D V Sbjct: 31 TGTVKWFNVKSGYGFI---NRNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAG 87 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 88 E-KGSEAANV 96 >gi|115524924|ref|YP_781835.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115518871|gb|ABJ06855.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisA53] Length = 219 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGFI P+ DV LH + + G EG + + VQ A G Sbjct: 55 GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGFQTAYEGARIICECVQR-AKGY 110 Query: 65 YSAENLKLVPKSS 77 + + + ++ Sbjct: 111 QAFRVVSMDESTA 123 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59 + R +KW+N +G+GF+T E D+F+H + G+ L GQ LV + Sbjct: 144 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRFG---P 197 Query: 60 DANGKYSAE 68 + G +AE Sbjct: 198 GSKGMMAAE 206 >gi|221234388|ref|YP_002516824.1| cold shock protein CspD [Caulobacter crescentus NA1000] gi|220963560|gb|ACL94916.1| cold shock protein cspD [Caulobacter crescentus NA1000] Length = 196 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KGYGFI P+ ++G DV LH +++ + G EG ++ D V+ G Sbjct: 20 GKVKWFDAGKGYGFIVPDDPGQTGLKDVLLHVTSLRNCGRETAMEGAIIVCDVVRR-PKG 78 Query: 64 KYSAENLKL 72 +E + L Sbjct: 79 WQVSEVVNL 87 Score = 60.0 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +KW+N KGYGF+ + D+F+H + GL +L G V + + Sbjct: 128 AEHAKVKWFNRTKGYGFVIRDAEP---GDIFVHIETLRRGGLEDLQPGDDVLVRFARG-P 183 Query: 62 NGKYSAE 68 G AE Sbjct: 184 KGLVVAE 190 >gi|157816953|ref|NP_001102739.1| protein lin-28 homolog A [Rattus norvegicus] gi|149024199|gb|EDL80696.1| rCG30757 [Rattus norvegicus] Length = 209 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|308497891|ref|XP_003111132.1| hypothetical protein CRE_03839 [Caenorhabditis remanei] gi|308240680|gb|EFO84632.1| hypothetical protein CRE_03839 [Caenorhabditis remanei] Length = 263 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KWY+ + YGFI+ E + DVF+H++A+A + L L + + V +D V+ Sbjct: 63 QGKVKWYSVLRRYGFISRE---DGEKDVFVHQTAIAKSATEKFYLRTLGDEEEVIFDLVE 119 Query: 59 NDANGKYSAEN 69 NG +A Sbjct: 120 G-KNGPEAANV 129 >gi|296128606|ref|YP_003635856.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] gi|296020421|gb|ADG73657.1| cold-shock DNA-binding domain protein [Cellulomonas flavigena DSM 20109] Length = 127 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ ++G+GFI + G +VFLH SA+ AG+ G V + + Sbjct: 1 MPTGKVKWFDTERGFGFIA----DDEGGEVFLHASAL-PAGVTAPKPGTKVEFGVA-DGR 54 Query: 62 NGKYSAENLKLVP 74 G + L P Sbjct: 55 RGPQALSVTFLDP 67 >gi|291395012|ref|XP_002713966.1| PREDICTED: lin-28 homolog [Oryctolagus cuniculus] Length = 203 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 36 GICKWFNVRMGFGFLSMTARAGVALDPLVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 95 Query: 61 AN 62 Sbjct: 96 KG 97 >gi|255586259|ref|XP_002533782.1| cold shock protein, putative [Ricinus communis] gi|223526283|gb|EEF28595.1| cold shock protein, putative [Ricinus communis] Length = 257 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG + WY+ +KGYGFI P G G DVF+H S++ S G +L G + Y+ + ++A G Sbjct: 111 RGILIWYSNEKGYGFIKPNG---GGVDVFVHSSSLKSNGHIHLGAGMPLEYETIISNA-G 166 Query: 64 KYSAENLK 71 K A N+ Sbjct: 167 KLQAINVT 174 >gi|163786612|ref|ZP_02181060.1| cold shock protein, DNA-binding [Flavobacteriales bacterium ALC-1] gi|159878472|gb|EDP72528.1| cold shock protein, DNA-binding [Flavobacteriales bacterium ALC-1] Length = 63 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT E E+G D+F+H S + L EG V Y + + Sbjct: 2 TGTVKFFNDSKGFGFITNE---ETGKDIFVHVSNLNGV---ELREGDNVEY--TEEEGRK 53 Query: 64 KYSAENLKLV 73 A N++++ Sbjct: 54 GMVAANVQVL 63 >gi|305664855|ref|YP_003861142.1| cold shock protein [Maribacter sp. HTCC2170] gi|88707977|gb|EAR00216.1| cold shock protein [Maribacter sp. HTCC2170] Length = 64 Score = 68.1 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KGYGFIT +GS E D F+H S + + + EG +V ++ Q Sbjct: 1 MSKGTVKFFNDSKGYGFITEDGSNE---DHFVHISGL----IDEVREGDVVEFELQQGKK 53 Query: 62 NGKYSAENLKLV 73 +A N+K+V Sbjct: 54 G--LNAVNVKVV 63 >gi|296395233|ref|YP_003660117.1| cold-shock DNA-binding domain-containing protein [Segniliparus rotundus DSM 44985] gi|296182380|gb|ADG99286.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM 44985] Length = 145 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 6/65 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KWY+ DKG+GF+T E GDDV++ SA+ AG+ L GQ+V + + Sbjct: 5 VPTGKVKWYSADKGFGFLTQE----DGDDVYVGSSAL-PAGVDELKPGQVVEFGMA-DGR 58 Query: 62 NGKYS 66 G + Sbjct: 59 RGPQA 63 >gi|184201477|ref|YP_001855684.1| cold shock protein [Kocuria rhizophila DC2201] gi|183581707|dbj|BAG30178.1| cold shock protein [Kocuria rhizophila DC2201] Length = 127 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 9/70 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ DKG+GF+ T+ G +VFLH SA+ G+ + G + + A Sbjct: 1 MPTGKVKWFDADKGFGFLA----TDDGQEVFLHSSALPR-GVTTVKPGTRMDFGI----A 51 Query: 62 NGKYSAENLK 71 +GK A+ L Sbjct: 52 DGKRGAQALS 61 >gi|157369959|ref|YP_001477948.1| cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] gi|157321723|gb|ABV40820.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] Length = 73 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ GYGFI+P + D++++ R ++A+ +L EGQ V + ++ + Sbjct: 7 LQMGRVKWFDQAAGYGFISP---VDGSDEIYVSRRSIANTKNKSLNEGQNVEFSIYRS-S 62 Query: 62 NGKYSAENL 70 +G +A+ + Sbjct: 63 HGLSAADVI 71 >gi|319951935|ref|YP_004163202.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] gi|319420595|gb|ADV47704.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] Length = 63 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFIT EGS+E D F+H S + + EG +V ++ Q Sbjct: 1 MNKGTVKFFNDSKGFGFITEEGSSE---DHFVHISGLVDE----IREGDVVEFELQQGKK 53 Query: 62 NGKYSAENLKLV 73 +A N++++ Sbjct: 54 G--LNAVNVRVL 63 >gi|268532128|ref|XP_002631192.1| C. briggsae CBR-CEY-1 protein [Caenorhabditis briggsae] gi|187036968|emb|CAP23634.1| CBR-CEY-1 protein [Caenorhabditis briggsae AF16] Length = 202 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 +G++KW+N GYGFI T++ +D+F+H++A+ + L +L + + V +D V+ Sbjct: 22 KGTVKWFNVKNGYGFI---NRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEG 78 Query: 60 DAN 62 Sbjct: 79 SKG 81 >gi|296208902|ref|XP_002751304.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus] Length = 208 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDD----VFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ D VF+H+S + G +L EG+ V + + ++ Sbjct: 42 GICKWFNVRMGFGFLSMTARARVALDPPVNVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|167042126|gb|ABZ06860.1| putative cold-shock DNA-binding domain protein [uncultured marine crenarchaeote HF4000_ANIW93E5] Length = 69 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 9/73 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI EG D+F+H++ V +++G V ++ + Sbjct: 6 MENGTVKWFNQTKGFGFIEREGDE---KDLFVHKTEVEG----TISDGDKVEFEVGSTEK 58 Query: 62 NGKYSAENLKLVP 74 +A +K V Sbjct: 59 G--PNAVKVKRVE 69 >gi|110597967|ref|ZP_01386248.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] gi|110340416|gb|EAT58905.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] Length = 70 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60 + G +KW++ KG+GFI + G+D+F+H S + S L + V ++ Sbjct: 1 MVNGKVKWFDVRKGFGFI---LNPNGGEDIFVHFSNIVSEEKFRFLNQDADVDFEL--EA 55 Query: 61 ANGKYSAENLK 71 + A N++ Sbjct: 56 RGNRLQALNVR 66 >gi|145298105|ref|YP_001140946.1| cold-shock protein, DNA-binding [Aeromonas salmonicida subsp. salmonicida A449] gi|142850877|gb|ABO89198.1| cold-shock protein, DNA-binding [Aeromonas salmonicida subsp. salmonicida A449] Length = 219 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITP--EGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYV 57 M ++G I +N +G+GFITP EG + G ++F+H SA+ S G +L G+ V+Y Sbjct: 1 MRYQGRIASWNEARGFGFITPEQEGGEQQGSELFVHISALQSDG--SLPNVGERVSYQLG 58 Query: 58 QNDANGKYSAEN 69 + + + Sbjct: 59 TGKDDKPRAVQV 70 >gi|330937547|gb|EGH41489.1| cold shock protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 40 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 4/41 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG 42 G++KW+N +KG+GFITP +SGDD+F+H A+ S G Sbjct: 4 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAIQSDG 40 >gi|118588945|ref|ZP_01546352.1| putative cold shock transcription regulator protein [Stappia aggregata IAM 12614] gi|118438274|gb|EAV44908.1| putative cold shock transcription regulator protein [Stappia aggregata IAM 12614] Length = 193 Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + ++KW+N KG+GF+T E +D+F+H + G+ L GQ V + + Sbjct: 118 EKATVKWFNRVKGFGFLTQ---GEGSEDIFIHMETLRRFGITELRPGQDVLVRFGEG-PK 173 Query: 63 GKYSAE 68 G+ +AE Sbjct: 174 GRMAAE 179 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IKW++ KGYGFI P+ D+ LH + + G EG V + + + G Sbjct: 28 GTIKWFDVGKGYGFIVPDSGD---GDILLHVTCLRRDGYQTAYEGARVVCEVL-DRPRGL 83 Query: 65 YSAENLKLVPKSS 77 + L + ++ Sbjct: 84 QAFRILSMDESTA 96 >gi|156385226|ref|XP_001633532.1| predicted protein [Nematostella vectensis] gi|156220603|gb|EDO41469.1| predicted protein [Nematostella vectensis] Length = 98 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI + ++ +D+F+H++A+A L ++ +G++V ++ V Sbjct: 9 TGTVKWFNVKNGYGFINRD---DNKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVVSG 65 Query: 60 DANGKYSAENLK 71 A N+ Sbjct: 66 TKG--LEASNVT 75 >gi|159039857|ref|YP_001539110.1| cold-shock DNA-binding domain-containing protein [Salinispora arenicola CNS-205] gi|157918692|gb|ABW00120.1| cold-shock DNA-binding domain protein [Salinispora arenicola CNS-205] Length = 128 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ KGYGF+T ++ G DVFL ++A+ AG+ +L GQ V + V + Sbjct: 1 MPTGRVKWYDATKGYGFVT----SDEGGDVFLPKAAL-PAGVTDLKGGQRVDFSVVDSRR 55 Query: 62 NGKYSAENLKLVP 74 A +KL+ Sbjct: 56 G--AQAMGVKLLE 66 >gi|119383611|ref|YP_914667.1| cold-shock DNA-binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119373378|gb|ABL68971.1| cold-shock DNA-binding protein family [Paracoccus denitrificans PD1222] Length = 197 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GF+T + G D+ LH + + + G ++ EG V +Q G Sbjct: 13 GVVKWFDGSKGFGFLT---DPDGGADILLHANVLRNFGQSSVAEGSHVI-AIIQKTPRGM 68 Query: 65 YSAENLKLVPKSSN 78 + E L++ P +S Sbjct: 69 QAVEVLEITPPASE 82 Score = 57.3 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF DVFLH + +G +L G+ + V + G Sbjct: 107 RVKWFDKAKGFGF---ANIFADKADVFLHVEVLRHSGFADLAVGEAIALRVV-DGRRGMM 162 Query: 66 SAENLK 71 +A+ L Sbjct: 163 AAQILS 168 >gi|239832152|ref|ZP_04680481.1| Cold shock-like protein cspG [Ochrobactrum intermedium LMG 3301] gi|239824419|gb|EEQ95987.1| Cold shock-like protein cspG [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ +D+ LH +++ G EG + + Q + Sbjct: 68 GHIKWFDVAKGYGFIVPD--QPGLNDILLHVTSLRRDGFQTALEGARIVCEVRQGERG 123 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + D G + Sbjct: 163 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGEGD-KGLMA 218 Query: 67 AE 68 AE Sbjct: 219 AE 220 >gi|326798201|ref|YP_004316020.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] gi|326548965|gb|ADZ77350.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] Length = 63 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KG+GFI P G D+F+H S + + ++ E V+Y+ Q Sbjct: 1 MQEGVVKFFNETKGFGFIVP---NAGGGDIFVHSSGL----IDSIRENDHVSYEVEQGKK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|1402769|gb|AAC80251.1| major cold-shock protein [Proteus vulgaris] Length = 47 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 DKG+GFITP+ ++ DDVF+H SA+ S +L EGQ V++ Sbjct: 1 DKGFGFITPKDGSK--DDVFVHFSAIQSDSFKSLKEGQEVSFSIENGAK 47 >gi|76798540|ref|ZP_00780773.1| 'Cold-shock' DNA-binding domain, putative [Streptococcus agalactiae 18RS21] gi|76586104|gb|EAO62629.1| 'Cold-shock' DNA-binding domain, putative [Streptococcus agalactiae 18RS21] Length = 53 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 +GFI+ +E+G DVF H S + G L EGQ VT+D Q+ G A N+ LV Sbjct: 1 FGFIS----SETGTDVFAHFSEIKVDGFKTLEEGQKVTFDI-QDGQRGPQ-ATNINLVK 53 >gi|86357508|ref|YP_469400.1| cold shock protein [Rhizobium etli CFN 42] gi|86281610|gb|ABC90673.1| cold shock protein [Rhizobium etli CFN 42] Length = 192 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI P+ DV LH + + G + EG + VQ G Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALVQRRERG 82 Query: 64 KYS 66 + Sbjct: 83 YQA 85 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N KG+GF+T E +D+F+H + GL L GQ+V V+ + Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170 Query: 60 DANGKYSAE 68 G +AE Sbjct: 171 GEKGLMAAE 179 >gi|170572609|ref|XP_001892171.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi] gi|158602705|gb|EDP39010.1| 'Cold-shock' DNA-binding domain containing protein [Brugia malayi] Length = 244 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KWY+ YGFI + G+DVF+H++A+A + L L +G+ V +D VQ Sbjct: 7 KGKVKWYSVRYHYGFIARDD--NKGNDVFVHQTAIAKSRIIKYYLRTLGDGEEVLFDIVQ 64 Query: 59 NDANGKYSAEN 69 G +A Sbjct: 65 G-KQGPEAANV 74 >gi|114573575|ref|XP_001138838.1| PREDICTED: similar to transcription factor EF1(A) [Pan troglodytes] Length = 324 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ + + V +D V+ + Sbjct: 61 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKKNPRKYLRSVGDRETVEFDVVEGE 117 Query: 61 ANGKYSAEN 69 G +A Sbjct: 118 -KGAEAANV 125 >gi|163755667|ref|ZP_02162786.1| cold shock protein [Kordia algicida OT-1] gi|161324580|gb|EDP95910.1| cold shock protein [Kordia algicida OT-1] Length = 69 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFIT EG+ F+H S + + + EG V +D + Sbjct: 7 MSKGTVKFFNDTKGFGFITEEGTNTEH---FVHISGL----IDEVREGDEVEFDLQEGRK 59 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 60 G--LNAVNVKVI 69 >gi|92117674|ref|YP_577403.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91800568|gb|ABE62943.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 68 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + GS+K++N +KGYGFI P+ + D+FLH +A L V Y+ + Sbjct: 1 MQTGSVKFFNAEKGYGFIQPD---DGTPDIFLHVHGLA-DKLRYPCPRDRVEYEVGKG-P 55 Query: 62 NGKYSAENLKLV 73 +G+ AE + L+ Sbjct: 56 DGRLRAERVALI 67 >gi|146283892|ref|YP_001174045.1| cold-shock DNA-binding domain-containing protein [Pseudomonas stutzeri A1501] gi|145572097|gb|ABP81203.1| cold-shock DNA-binding domain protein [Pseudomonas stutzeri A1501] Length = 235 Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M RG++K +N DKG+GFI PE + G+++F+H SAV L G V + D Sbjct: 1 MERRGTLKSWNDDKGFGFIRPE---QGGEELFVHISAVHGE-RRPLVGG-RVLF-VAGRD 54 Query: 61 ANGKYSAENLKL 72 A G+ AE+++L Sbjct: 55 AQGRLRAEHVRL 66 >gi|89054965|ref|YP_510416.1| cold-shock DNA-binding protein family protein [Jannaschia sp. CCS1] gi|88864514|gb|ABD55391.1| cold-shock DNA-binding protein family [Jannaschia sp. CCS1] Length = 181 Score = 67.7 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G +E DVF+H + +G L G+ V V + G+ Sbjct: 116 RVKWFDKAKGFGFANVFGHSE---DVFVHVEVLRRSGFTELQPGEAVAMKVV-DGPRGRM 171 Query: 66 SAEN 69 +AE Sbjct: 172 AAEV 175 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GF+ + E G D+ LH + + S G ++ EG V Q G Sbjct: 24 GVVKWFDTTKGFGFVLSD---EGGPDILLHANVLRSFGRGSIAEGARV-MLRTQATGRGL 79 Query: 65 YSAENLKL 72 + E + + Sbjct: 80 QAVEIIAI 87 >gi|319953293|ref|YP_004164560.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] gi|319421953|gb|ADV49062.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] Length = 64 Score = 67.7 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K+YN KGYGFIT + +G D+F+H +++ A L EG V Y+ ++ G Sbjct: 2 TGTVKFYNGSKGYGFITND---NTGKDIFVHATSLNGA---ELNEGDQVEYE-EEDGEKG 54 Query: 64 KYSAEN 69 +A+ Sbjct: 55 IVAAQV 60 >gi|149369607|ref|ZP_01889459.1| cold shock protein [unidentified eubacterium SCB49] gi|149357034|gb|EDM45589.1| cold shock protein [unidentified eubacterium SCB49] Length = 63 Score = 67.7 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KG+GFIT + ++G D+F+H + + L EG V Y V+ + Sbjct: 2 EGTVKFFNESKGFGFITND---DTGKDIFVHITGLNGQ---ALNEGDKVEY--VEEEGRK 53 Query: 64 KYSAENLKLV 73 A ++++ Sbjct: 54 GMVAGQVRVI 63 >gi|314982320|gb|EFT26413.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL110PA3] gi|315092638|gb|EFT64614.1| cold-shock DNA-binding domain protein [Propionibacterium acnes HL110PA4] Length = 127 Score = 67.7 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++Y+ KG+GF+T + G DV+++ S V AG+ L GQ V + V+ Sbjct: 1 MPTGKVRFYDATKGFGFLTKD----GGGDVYVNAS-VLPAGVNTLKPGQKVDFGIVEGRR 55 Query: 62 NGKYSAENLKLVP 74 A +L++V Sbjct: 56 G--EQALSLQIVE 66 >gi|209885160|ref|YP_002289017.1| cold-shock DNA-binding domain protein [Oligotropha carboxidovorans OM5] gi|209873356|gb|ACI93152.1| cold-shock DNA-binding domain protein [Oligotropha carboxidovorans OM5] Length = 191 Score = 67.7 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH + + G EG + + VQ Sbjct: 27 GVIKWFDASKGYGFIVPD---NGLPDILLHVTVLRRDGYQTAYEGARLICECVQRQKG 81 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N +G+GF++ E D+F+H + G+ L GQ V V+ Sbjct: 116 LERAQVKWFNRLRGFGFVS---CGEGTPDIFVHMETLRRYGMTELRPGQYV---LVRYGP 169 Query: 60 DANGKYSAE 68 + G +AE Sbjct: 170 GSKGLMAAE 178 >gi|240139761|ref|YP_002964238.1| putative tandem cold-shock DNA-binding domain protein [Methylobacterium extorquens AM1] gi|240009735|gb|ACS40961.1| putative tandem cold-shock DNA-binding domain protein [Methylobacterium extorquens AM1] Length = 181 Score = 67.7 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++P KG+GFI P+ + DV LH + + G +EG + + VQ A G Sbjct: 18 GRIKWFDPSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR-ARGW 73 Query: 65 YSAENLKL 72 + L L Sbjct: 74 QAFRVLSL 81 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 9/74 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N +G+GF++ + D+F+H + G+ L G+ V V+ + Sbjct: 107 LERAVVKWFNRLRGFGFLSR---GDDTPDIFVHMETLRRYGIAELKPGEEV---MVRYGD 160 Query: 60 DANGKYSAENLKLV 73 + G +AE ++LV Sbjct: 161 GSKGAMAAE-VRLV 173 >gi|284035600|ref|YP_003385530.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74] gi|283814893|gb|ADB36731.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74] Length = 63 Score = 67.3 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI P+ + G+D+F+H S + + + E V ++ + Sbjct: 1 MQTGTVKFFNETKGFGFIKPD---DGGEDIFVHASGL----IDQIRENDKVKFNVERGKK 53 Query: 62 NGKYSAENLKL 72 +A N+++ Sbjct: 54 G--LNAVNVEM 62 >gi|145596458|ref|YP_001160755.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440] gi|145305795|gb|ABP56377.1| cold-shock DNA-binding protein family [Salinispora tropica CNB-440] Length = 128 Score = 67.3 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ KGYGF+T + G DVFL ++A+ AG+ +L GQ V + V + Sbjct: 1 MPTGRVKWYDATKGYGFVT----NDEGGDVFLPKAAL-PAGVTDLKGGQRVDFSVVDSRR 55 Query: 62 NGKYSAENLKLVP 74 A +KL+ Sbjct: 56 G--AQAMGVKLLE 66 >gi|221116100|ref|XP_002159745.1| PREDICTED: similar to Y box binding protein 1 [Hydra magnipapillata] Length = 308 Score = 67.3 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ Sbjct: 38 GTVKWFNVRNGYGFI---HRNDTQNDVFVHQTAIVKNNPNKYLRSVGDGETVEFDVVEGV 94 Query: 61 ANGKYSAENLK 71 + A N+ Sbjct: 95 KG--HEAINVT 103 >gi|163760322|ref|ZP_02167405.1| putative cold shock protein [Hoeflea phototrophica DFL-43] gi|162282721|gb|EDQ33009.1| putative cold shock protein [Hoeflea phototrophica DFL-43] Length = 191 Score = 67.3 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KG+GFI P+ +DV LH + + G + EG + + + + Sbjct: 26 TGVIKWFDVAKGFGFIIPD---NGMEDVLLHVTCLRRDGYQTVLEGTRIVCEIQKRERG 81 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N KG+GF+T E +D+F+H + GL L GQ+V V+ N Sbjct: 116 LERAIVKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRYGLAELRPGQVV---LVRFGN 169 Query: 60 DANGKYSAE 68 G +AE Sbjct: 170 GEKGLMAAE 178 >gi|254421024|ref|ZP_05034748.1| 'Cold-shock' DNA-binding domain protein [Brevundimonas sp. BAL3] gi|196187201|gb|EDX82177.1| 'Cold-shock' DNA-binding domain protein [Brevundimonas sp. BAL3] Length = 174 Score = 67.3 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 5 GSIKWYNPDKGYGFITPEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW++P KGYGFI P+ T DV LH S++ G EG + D V+ Sbjct: 11 GRVKWFDPAKGYGFIVPDDPTLTELRDVLLHISSLRDTGRETADEGAPIVCDCVRRSKG 69 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KGYGF+ + D+F+H + GL +L G V + + G Sbjct: 112 VKWFNRTKGYGFVVRDREP---GDIFVHIETLRRCGLDDLVPGDTVQVRFA-SGPKGLVV 167 Query: 67 AE 68 AE Sbjct: 168 AE 169 >gi|332669174|ref|YP_004452182.1| cold-shock DNA-binding domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338212|gb|AEE44795.1| cold-shock DNA-binding domain protein [Cellulomonas fimi ATCC 484] Length = 126 Score = 67.3 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 8/74 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ ++G+GFI + G +VFLH SA+ AG+ G V + + Sbjct: 1 MPTGKVKWFDTERGFGFIA----DDDGGEVFLHASAL-PAGV-TPKPGTKVDFGVA-DGR 53 Query: 62 NGKYSAENLKLVPK 75 G A ++K++ Sbjct: 54 RGPQ-ALSVKILDP 66 >gi|238897472|ref|YP_002923149.1| RNA chaperone, transcription antiterminator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465227|gb|ACQ67001.1| RNA chaperone, transcription antiterminator [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 69 Score = 67.3 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 3/53 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + +G +KW++ GYGFI+PE + G D+++H++A+A+ +L GQ V + Sbjct: 3 LKKGKVKWFDKIAGYGFISPE---DGGLDIYVHKAAIANIKDKSLIAGQDVEF 52 >gi|57900030|dbj|BAD88072.1| cold shock domain protein 2-like protein [Oryza sativa Japonica Group] Length = 221 Score = 67.3 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K ++ G+ FITP+ + +D+F+H+S++ G +L + ++ +D +G Sbjct: 7 KGMVKGFDATNGFSFITPD---DGSEDLFIHQSSLKFDGYRSLNDDDVIELSVGSSD-DG 62 Query: 64 KYSAENLK 71 + A ++ Sbjct: 63 RTKAVDVT 70 >gi|328543603|ref|YP_004303712.1| Cold shock-like protein cspG [polymorphum gilvum SL003B-26A1] gi|326413347|gb|ADZ70410.1| Cold shock-like protein cspG [Polymorphum gilvum SL003B-26A1] Length = 193 Score = 67.3 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IKW++ KGYGFI P+ D+ LH + + G EG V + + + G Sbjct: 28 GTIKWFDIAKGYGFIVPD---NGLPDILLHVTCLRRDGFQTAYEGARVVCEVL-DKPRGL 83 Query: 65 YSAENLKLVPKSS 77 + L + ++ Sbjct: 84 QAFRILSMDESTA 96 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--ND 60 + ++KW+N KG+GF+T E +D+F+H + G+ L GQ V V+ Sbjct: 118 EKATVKWFNRVKGFGFLTQ---GEGTEDIFIHMETLRRFGITELRPGQDV---LVRFGTG 171 Query: 61 ANGKYSAE 68 G+ +AE Sbjct: 172 PKGRMAAE 179 >gi|255530444|ref|YP_003090816.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366] gi|255343428|gb|ACU02754.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366] Length = 63 Score = 67.3 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFI P ++F+H S + + ++ E V+YD Q Sbjct: 1 MQQGTVKFFNETKGFGFIVP---ANGDSEIFVHSSGL----IDSIRENDSVSYDVEQGKK 53 Query: 62 NGKYSAENLKL 72 +A N+K+ Sbjct: 54 G--LNAINVKI 62 >gi|3121926|sp|Q48493|CSPA_KLEPN RecName: Full=Major cold shock protein gi|1402753|gb|AAC80243.1| major cold-shock protein [Klebsiella pneumoniae] Length = 46 Score = 67.3 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 KG+GFI+P + DVF+H SA+ S L EGQ V++ Sbjct: 1 SKGFGFISP---KDGSKDVFVHFSAIQSDSFKTLNEGQEVSFTIENGAK 46 >gi|14548150|gb|AAK66807.1|U40238_30 RNA-binding cold-shock protein [uncultured crenarchaeote 4B7] Length = 64 Score = 67.3 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KW+N KG+GFI E D+F+H++ + + +G V ++ +++ Sbjct: 1 MEIGTVKWFNQTKGFGFIERE---NDDKDLFVHKTEIEGQ----IRDGDKVEFEVGESEK 53 Query: 62 NGKYSAENLKLV 73 +A +K V Sbjct: 54 G--PNAVKVKKV 63 >gi|331009020|gb|EGH89076.1| cold shock domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 53 Score = 67.3 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 6/56 (10%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 +GFITPE SG D+F+H A+ G +L EGQ VT+ VQ A+ ++ Sbjct: 1 FGFITPE----SGPDLFVHFRAIQGNGFKSLKEGQKVTFVAVQGQKG--MQADEVQ 50 >gi|91218197|ref|ZP_01255145.1| cold shock protein [Psychroflexus torquis ATCC 700755] gi|91183655|gb|EAS70050.1| cold shock protein [Psychroflexus torquis ATCC 700755] Length = 63 Score = 67.3 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFIT EG D F+H S + + + EG V +D + + Sbjct: 1 MNKGTVKFFNDTKGFGFITEEGVD---KDHFVHASGL----IDEIREGDEVEFDLQEGNK 53 Query: 62 NGKYSAENLKLV 73 +A N++++ Sbjct: 54 G--LNAVNVRVL 63 >gi|12082718|gb|AAG48580.1| cold shock-like protein CspE [Brucella abortus] Length = 121 Score = 67.3 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83 >gi|111025370|ref|YP_707790.1| cold shock protein CspA [Rhodococcus jostii RHA1] gi|110824349|gb|ABG99632.1| probable cold shock protein CspA [Rhodococcus jostii RHA1] Length = 79 Score = 67.3 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 N +KG+GF P+G VF+H S +A G L EGQ + Y+ Q AEN Sbjct: 25 NGEKGFGFTAPDGG------VFVHFSEIAGRGFKTLDEGQHMEYEVSQGQKG--VQAEN 75 >gi|254469479|ref|ZP_05082884.1| cold shock protein [Pseudovibrio sp. JE062] gi|211961314|gb|EEA96509.1| cold shock protein [Pseudovibrio sp. JE062] Length = 193 Score = 67.3 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T E +D+F+H + G+ L GQ V + + GK + Sbjct: 122 VKWFNRVKGFGFLTR---GEGTEDIFIHMETLRRFGITELRPGQKVQVRFG-DGPKGKMA 177 Query: 67 AEN 69 AE Sbjct: 178 AEV 180 Score = 65.0 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IKW++ KGYGF+ PE + DV LH + + G EG V + + N G Sbjct: 28 GTIKWFDIGKGYGFVEPE---DDLPDVLLHVTCLRRDGYQTAYEGARVVCEVL-NRPRGL 83 Query: 65 YS 66 + Sbjct: 84 QA 85 >gi|332293275|ref|YP_004431884.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171361|gb|AEE20616.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 63 Score = 67.3 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K++N KG+GFIT EG D F+H S + + + EG V ++ + + Sbjct: 1 MNNGTVKFFNDTKGFGFITEEGVE---KDHFVHISGL----IDEIREGDQVEFELKEGNK 53 Query: 62 NGKYSAENLKLV 73 +A N++++ Sbjct: 54 G--LNAVNVRVI 63 >gi|218462851|ref|ZP_03502942.1| cold shock protein [Rhizobium etli Kim 5] gi|327190806|gb|EGE57874.1| cold shock protein [Rhizobium etli CNPAF512] Length = 192 Score = 67.3 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI P+ DV LH + + G + EG + +Q G Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERG 82 Query: 64 KYS 66 + Sbjct: 83 YQA 85 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N KG+GF+T E +D+F+H + GL L GQ+V V+ + Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170 Query: 60 DANGKYSAE 68 G +AE Sbjct: 171 GEKGLMAAE 179 >gi|6911694|emb|CAB72144.1| cold-shock protein A [Streptococcus thermophilus] Length = 45 Score = 67.3 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 KG+GFIT +E G D+F H S++ S G +L E Q V +D Sbjct: 1 TKGFGFIT----SEDGQDLFAHFSSIQSDGFKSLDEDQKVEFDVEVGQR 45 >gi|209549149|ref|YP_002281066.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534905|gb|ACI54840.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 192 Score = 67.3 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI P+ DV LH + + G + EG + +Q G Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERG 82 Query: 64 KYS 66 + Sbjct: 83 YQA 85 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N KG+GF+T E +D+F+H + GL L GQ+V V+ + Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170 Query: 60 DANGKYSAE 68 G +AE Sbjct: 171 GEKGLMAAE 179 >gi|332293257|ref|YP_004431866.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171343|gb|AEE20598.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 63 Score = 66.9 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFIT EG D F+H S + + + EG V +D + + Sbjct: 1 MSKGTVKFFNDTKGFGFITEEGVE---KDHFVHISGL----IDEIREGDEVEFDLKEGNK 53 Query: 62 NGKYSAENLKLV 73 +A N++++ Sbjct: 54 G--LNAVNVRVI 63 >gi|22901742|gb|AAN10050.1| Y-box protein Ct-p50 [Chironomus tentans] Length = 317 Score = 66.9 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ D+F+H+SA+ + ++ +G++V +D V Sbjct: 31 TGTVKWFNVKSGYGFI---NRNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAG 87 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 88 E-KGSEAANV 96 >gi|118344374|ref|NP_001072010.1| Y-box protein 1/2/3 [Ciona intestinalis] gi|70571490|dbj|BAE06759.1| Y-box protein 1/2/3 [Ciona intestinalis] Length = 320 Score = 66.9 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 7/69 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G +KW+N GYGF+ + ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 28 GVVKWFNVRNGYGFVNRD---DNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGE 84 Query: 61 ANGKYSAEN 69 +A Sbjct: 85 KGLPEAANV 93 >gi|302876681|ref|YP_003845314.1| cold-shock DNA-binding domain-containing protein [Clostridium cellulovorans 743B] gi|307687356|ref|ZP_07629802.1| cold shock protein [Clostridium cellulovorans 743B] gi|302579538|gb|ADL53550.1| cold-shock DNA-binding domain protein [Clostridium cellulovorans 743B] Length = 69 Score = 66.9 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 7/72 (9%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ ++GYGFI S G D ++H S V +L EG+ V YD V+ + Sbjct: 4 YTGVVKWFDNERGYGFI----SGNEGMDAYVHHSQVKEKTHNKDLHEGESVKYDMVETNK 59 Query: 62 NGKYSAENLKLV 73 + A N++ + Sbjct: 60 --RPMAINVQKL 69 >gi|17507385|ref|NP_491645.1| Y-box family member (cey-2) [Caenorhabditis elegans] gi|13384447|gb|AAK21380.1| C. elegans y-box protein 2, confirmed by transcript evidence [Caenorhabditis elegans] Length = 267 Score = 66.9 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KWY+ + YGFI+ + D+F+H++A+A + L L + + V +D V+ Sbjct: 67 QGKVKWYSVLRRYGFISR---NDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVE 123 Query: 59 NDANGKYSAEN 69 NG +A Sbjct: 124 G-KNGPEAANV 133 >gi|190891571|ref|YP_001978113.1| cold shock protein [Rhizobium etli CIAT 652] gi|190696850|gb|ACE90935.1| cold shock protein [Rhizobium etli CIAT 652] Length = 192 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI P+ DV LH + + G + EG + +Q G Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERG 82 Query: 64 KYS 66 + Sbjct: 83 YQA 85 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N KG+GF+T E +D+F+H + GL L GQ+V V+ + Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170 Query: 60 DANGKYSAENLKLVPKSSN 78 G +AE +P ++ Sbjct: 171 GEKGLMAAEIHPDIPSQAS 189 >gi|319955744|ref|YP_004167011.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] gi|319424404|gb|ADV51513.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] Length = 63 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFIT +G D F+H S + + + EG +V +D + Sbjct: 1 MSKGTVKFFNDTKGFGFITEDGVD---RDHFVHISGL----IDEIREGDVVEFDLEEGKK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVL 63 >gi|325293188|ref|YP_004279052.1| cold shock protein [Agrobacterium sp. H13-3] gi|325061041|gb|ADY64732.1| cold shock protein [Agrobacterium sp. H13-3] Length = 192 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW++ KG+GFI P+ DV LH S + G + EG + +Q G Sbjct: 27 TGAVKWFDVAKGFGFIVPD---NGMQDVLLHVSCLRRDGYQTILEGTRI-VALIQRRDRG 82 Query: 64 KYS 66 + Sbjct: 83 FQA 85 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T E +D+F+H + GL L GQ+V + D Sbjct: 117 LERAIVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLVRFGDGD- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMAAE 179 >gi|218680675|ref|ZP_03528572.1| cold-shock DNA-binding domain protein [Rhizobium etli CIAT 894] Length = 192 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI P+ DV LH + + G + EG + +Q G Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERG 82 Query: 64 KYS 66 + Sbjct: 83 YQA 85 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N KG+GF+T E +D+F+H + GL L GQ+V V+ + Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170 Query: 60 DANGKYSAE 68 G +AE Sbjct: 171 GEKGLMAAE 179 >gi|258654047|ref|YP_003203203.1| cold-shock DNA-binding domain-containing protein [Nakamurella multipartita DSM 44233] gi|258557272|gb|ACV80214.1| cold-shock DNA-binding domain protein [Nakamurella multipartita DSM 44233] Length = 101 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 + RG +K++ PDKG+G IT + E G D ++H S + S G L G +V +DY Sbjct: 1 MARGFVKFFKPDKGWGAITSDALPE-GSDAWVHFSVIESDGYRALDAGDVVDFDYE 55 >gi|260061051|ref|YP_003194131.1| cold shock protein [Robiginitalea biformata HTCC2501] gi|88785183|gb|EAR16352.1| cold shock protein [Robiginitalea biformata HTCC2501] Length = 64 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KGYGFIT + ++G D+F+H +A+ GL L +G V Y + G Sbjct: 2 TGTVKFFNESKGYGFITND---DTGRDIFVHATAL--DGL-VLNQGDKVEYQETEG-RKG 54 Query: 64 KYSAEN 69 +A+ Sbjct: 55 MVAADV 60 >gi|302386647|ref|YP_003822469.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] gi|302197275|gb|ADL04846.1| cold-shock DNA-binding domain protein [Clostridium saccharolyticum WM1] Length = 69 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 7/72 (9%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ +KGYGF+ ST G DVF+H S V +L EG+ V +D +++ Sbjct: 4 YTGVVKWFDNEKGYGFL----STSEGQDVFVHHSQVKEKTHNKDLHEGESVNFDVRKDEK 59 Query: 62 NGKYSAENLKLV 73 A N++ + Sbjct: 60 G--LCALNVQKI 69 >gi|124267217|ref|YP_001021221.1| cold shock DNA-binding domain-containing protein [Methylibium petroleiphilum PM1] gi|124259992|gb|ABM94986.1| cold-shock DNA-binding domain [Methylibium petroleiphilum PM1] Length = 203 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 7/72 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQN 59 M G +K +N ++G+GFI P G D+F+H A + G + GQ VT++ V+ Sbjct: 1 MRLDGKLKSWNDERGFGFIDP---VHGGQDIFVHIKAFPSGTGRPTV--GQAVTFE-VEL 54 Query: 60 DANGKYSAENLK 71 NGK A +++ Sbjct: 55 GPNGKKRARSVQ 66 >gi|118344436|ref|NP_001072039.1| Y-box protein 1/2/3 [Ciona intestinalis] gi|70571495|dbj|BAE06760.1| Y-box protein 1/2/3 [Ciona intestinalis] Length = 273 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 7/69 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G +KW+N GYGF+ + ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 28 GVVKWFNVRNGYGFVNRD---DNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGE 84 Query: 61 ANGKYSAEN 69 +A Sbjct: 85 KGLPEAANV 93 >gi|255084065|ref|XP_002508607.1| predicted protein [Micromonas sp. RCC299] gi|226523884|gb|ACO69865.1| predicted protein [Micromonas sp. RCC299] Length = 303 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 5/58 (8%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 +G+GFITP+ + G+D+F H S++ + L EG V YD +D GK AE + Sbjct: 84 RGFGFITPD---QGGEDLFCHFSSITDGNM--LNEGARVEYDESFDDRKGKPRAERVT 136 >gi|241204473|ref|YP_002975569.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858363|gb|ACS56030.1| cold-shock DNA-binding domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 192 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI P+ DV LH + + G + EG + +Q G Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERG 82 Query: 64 KYS 66 + Sbjct: 83 YQA 85 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N KG+GF+T E +D+F+H + GL L GQ+V V+ + Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170 Query: 60 DANGKYSAE 68 G +AE Sbjct: 171 GEKGLMAAE 179 >gi|254503970|ref|ZP_05116121.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii DFL-11] gi|222440041|gb|EEE46720.1| 'Cold-shock' DNA-binding domain protein [Labrenzia alexandrii DFL-11] Length = 193 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IKW++ KGYGFI P+ D+ LH + + G EG V + + + G Sbjct: 28 GTIKWFDVGKGYGFIVPDSGE---TDILLHVTCLRRDGFQTAYEGARVVCEVL-DRPRGL 83 Query: 65 YSAENLKLVPKSS 77 + L + ++ Sbjct: 84 QAFRILSMDESTA 96 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--ND 60 ++KW+N KG+GF+T E +D+F+H + G+ L GQ V V+ Sbjct: 118 ETATVKWFNRVKGFGFLTQ---GEGTEDIFIHMETLRRYGITELRPGQEV---LVRFGTG 171 Query: 61 ANGKYSAE 68 G+ +AE Sbjct: 172 PKGRMAAE 179 >gi|225011297|ref|ZP_03701753.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-3C] gi|225004553|gb|EEG42519.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-3C] Length = 63 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N KGYGFIT + ESG D F+H +A+ + EG V+Y+ +++ Sbjct: 2 TGTVKFFNGSKGYGFITND---ESGKDTFVHATALNGL---QINEGDKVSYEEQESEKG- 54 Query: 64 KYSAENLKLV 73 +A ++ L+ Sbjct: 55 -MTAVDVALL 63 >gi|163852424|ref|YP_001640467.1| cold-shock protein DNA-binding [Methylobacterium extorquens PA1] gi|163664029|gb|ABY31396.1| Cold-shock protein DNA-binding [Methylobacterium extorquens PA1] Length = 202 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KG+GFI P+ + DV LH + + G +EG + + VQ A G Sbjct: 39 GRIKWFDVSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR-ARGW 94 Query: 65 YSAENLKL 72 + + L Sbjct: 95 QAFRVISL 102 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 9/74 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N +G+GF++ + D+F+H + G+ L G+ V V+ + Sbjct: 128 LERAVVKWFNRLRGFGFLSR---GDDTPDIFVHMETLRRYGIAELKPGEEV---MVRYGD 181 Query: 60 DANGKYSAENLKLV 73 + G +AE ++LV Sbjct: 182 GSKGAMAAE-VRLV 194 >gi|225010634|ref|ZP_03701104.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-3C] gi|225005187|gb|EEG43139.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-3C] Length = 63 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFI+ EG+ G + F+H S + + + EG V ++ Q Sbjct: 1 MNKGTVKFFNDTKGFGFISEEGA---GKEHFVHISGL----IDEIREGDEVEFELEQGKK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|298248814|ref|ZP_06972619.1| cold-shock DNA-binding domain protein [Ktedonobacter racemifer DSM 44963] gi|297551473|gb|EFH85339.1| cold-shock DNA-binding domain protein [Ktedonobacter racemifer DSM 44963] Length = 278 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G ++W++P+ G G I E E+G+++F H +A+ G + G V ++ V+ A Sbjct: 212 QGVVRWFDPNAGIGIIVRE---EAGEEIFFHFTALPGQGYRTIRAGVPVQFEIVEGRAG- 267 Query: 64 KYSAENLK 71 +A N++ Sbjct: 268 -LAARNIQ 274 >gi|91081961|ref|XP_966594.1| PREDICTED: similar to Y-box binding protein isoform 1 [Tribolium castaneum] gi|270007364|gb|EFA03812.1| hypothetical protein TcasGA2_TC013925 [Tribolium castaneum] Length = 297 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H+SA+ + ++ +G++V + V Sbjct: 30 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVVVG 86 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 87 E-KGNEAANV 95 >gi|17508335|ref|NP_491631.1| Y-box family member (cey-3) [Caenorhabditis elegans] gi|1707071|gb|AAB37828.1| C.elegans y-box protein 3 [Caenorhabditis elegans] Length = 265 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KWY+ + YGFI+ ++ DVF+H++A++ + L L + + V +D V Sbjct: 65 QGKVKWYSVLRRYGFISR---SDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLV- 120 Query: 59 NDANGKYSAEN 69 + NG +A Sbjct: 121 DGKNGPEAANV 131 >gi|17980576|gb|AAL50653.1| major cold shock protein [Lactobacillus crispatus] Length = 50 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 6/55 (10%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 G GFITP+ + DVF+H SA+ G +L EGQ V++ ++ A G A Sbjct: 1 GXGFITPD---DGSKDVFVHFSAI--NGYKSLDEGQKVSFTI-ESGAKGPAXANV 49 >gi|332187120|ref|ZP_08388860.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17] gi|332012820|gb|EGI54885.1| Cold-shock DNA-binding domain protein [Sphingomonas sp. S17] Length = 189 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ +G+GF + T DV LH + + S G +L EG V V+ G Sbjct: 25 GVVKWFDVTRGFGFAVADDLTYG--DVLLHFTVLQSHGRRSLPEGARVEMIAVERG-RGY 81 Query: 65 YSAENLKL 72 + E + + Sbjct: 82 QAREVVSI 89 Score = 56.9 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KGYGF+ + G D+F+H + G+ + GQ + V + G + Sbjct: 125 VKWFNRLKGYGFLLRDS---DGADIFVHMETLRRGGIVEVEPGQPLMARIV-DGPKGPLA 180 Query: 67 AENLKLVPKSS 77 + + P+ + Sbjct: 181 ---VAVTPRGA 188 >gi|149279957|ref|ZP_01886083.1| cold shock protein [Pedobacter sp. BAL39] gi|149229337|gb|EDM34730.1| cold shock protein [Pedobacter sp. BAL39] Length = 63 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI P ++F+H S + L ++ E VTYD Q Sbjct: 1 MQEGTVKFFNETKGFGFIVP---ANGDSEIFVHSSGL----LDSIRENDSVTYDVEQGKK 53 Query: 62 NGKYSAENLKL 72 +A N+K+ Sbjct: 54 G--LNAINVKI 62 >gi|170738730|ref|YP_001767385.1| cold-shock DNA-binding domain-containing protein [Methylobacterium sp. 4-46] gi|168193004|gb|ACA14951.1| cold-shock DNA-binding domain protein [Methylobacterium sp. 4-46] Length = 204 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KG+GFI P+ DV LH + + G + +EG + + VQ A G Sbjct: 41 GRIKWFDVAKGFGFIVPDS---GAPDVLLHVTCLRRDGHQSASEGARIVVEAVQR-ARGW 96 Query: 65 YSAENLKL 72 + + L Sbjct: 97 QAFRVVSL 104 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + +KW+N +G+GF++ E D+F+H + G+ L G+ V V+ + Sbjct: 130 LETAVVKWFNRLRGFGFLSR---GEGTPDIFVHMETLRRYGIAELKPGERV---MVRYGD 183 Query: 60 DANGKYSAEN 69 + G +AE Sbjct: 184 GSKGLMAAEV 193 >gi|256061344|ref|ZP_05451488.1| cold-shock family protein [Brucella neotomae 5K33] gi|261325345|ref|ZP_05964542.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae 5K33] gi|261301325|gb|EEY04822.1| cold-shock DNA-binding domain-containing protein [Brucella neotomae 5K33] Length = 193 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH +++ G EG V + D Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARVVCEVRHGDRG 83 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G + Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGE-KGLMA 178 Query: 67 AE 68 AE Sbjct: 179 AE 180 >gi|305665006|ref|YP_003861293.1| cold shock protein-like CspA family [Maribacter sp. HTCC2170] gi|88707420|gb|EAQ99665.1| cold shock protein-like CspA family [Maribacter sp. HTCC2170] Length = 63 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFIT EG D F+H S + + EG V +D + + Sbjct: 1 MNKGTVKFFNNAKGFGFITEEGVD---KDHFVHVSGLVDE----IREGDEVEFDLQEGNK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|217976738|ref|YP_002360885.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] gi|217502114|gb|ACK49523.1| cold-shock DNA-binding domain protein [Methylocella silvestris BL2] Length = 189 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFITP+ + G DV LH + + G EG + + + Sbjct: 28 GEIKWFDVAKGYGFITPD---DGGPDVLLHVTILRRDGYAAAHEGARIVCEAARRAKG 82 Score = 58.8 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL--VTYDYVQNDANGK 64 +KW+N KG+GF+T + +D+F+H + G+ L G+ V + + G Sbjct: 120 VKWFNRMKGFGFLTR---GDGTEDIFIHMETLRHYGIGELRPGESLLVRFG---DGPKGL 173 Query: 65 YSAEN 69 +AE Sbjct: 174 MAAEV 178 >gi|237785049|ref|YP_002905754.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385] gi|237757961|gb|ACR17211.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385] Length = 130 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++PDKG+GF+T DDVF+ + V G+ L +GQ + Y++ A Sbjct: 1 MPIGRVKWFDPDKGFGFVT----NPGDDDVFVG-TQVLPDGVEELHQGQKIEYEF----A 51 Query: 62 NGKYSAENLKL 72 G+ + L++ Sbjct: 52 AGRKGPQVLRI 62 >gi|297243561|ref|ZP_06927492.1| cold shock protein [Gardnerella vaginalis AMD] gi|296888312|gb|EFH27053.1| cold shock protein [Gardnerella vaginalis AMD] Length = 129 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++WY+ KGYGFI + G DVFL +A+ + L +G V + ++ Sbjct: 1 MPNGRVRWYDTQKGYGFIVGD----DGKDVFLPAAALPVT-VKTLHKGTRVEFSVIEGRK 55 Query: 62 NGKYSAENL 70 + N+ Sbjct: 56 GPQAMGLNV 64 >gi|320007562|gb|ADW02412.1| cold-shock DNA-binding domain protein [Streptomyces flavogriseus ATCC 33331] Length = 70 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+++ ++ +KGYG+I P + G ++ +H SA+ A L GQ V++D VQ Sbjct: 1 MAEGTVQVFSAEKGYGYIRP---STGGPEIIVHFSAIVEACPVGLVAGQTVSFDIVQR-R 56 Query: 62 NGKYSAENLKL 72 G AE +++ Sbjct: 57 RGPE-AERVQI 66 >gi|218531182|ref|YP_002421998.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|254562173|ref|YP_003069268.1| tandem cold-shock DNA-binding domain-containing protein [Methylobacterium extorquens DM4] gi|218523485|gb|ACK84070.1| cold-shock DNA-binding domain protein [Methylobacterium chloromethanicum CM4] gi|254269451|emb|CAX25417.1| putative tandem cold-shock DNA-binding domain protein [Methylobacterium extorquens DM4] Length = 181 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KG+GFI P+ + DV LH + + G +EG + + VQ A G Sbjct: 18 GRIKWFDVSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR-ARGW 73 Query: 65 YSAENLKL 72 + L L Sbjct: 74 QAFRVLSL 81 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 9/74 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N +G+GF++ + D+F+H + G+ L G+ V V+ + Sbjct: 107 LERAVVKWFNRLRGFGFLSR---GDDTPDIFVHMETLRRYGIAELKPGEEV---MVRYGD 160 Query: 60 DANGKYSAENLKLV 73 + G +AE ++LV Sbjct: 161 GSKGAMAAE-VRLV 173 >gi|312083329|ref|XP_003143816.1| hypothetical protein LOAG_08235 [Loa loa] gi|307761020|gb|EFO20254.1| hypothetical protein LOAG_08235 [Loa loa] Length = 310 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KWY+ YGFI + + G+DVF+H++A+ + L L +G+ V +D V+ Sbjct: 77 KGRVKWYSVRFHYGFIARD---DKGNDVFVHQTAITKSRIIKYYLRTLGDGEEVLFDIVE 133 Query: 59 NDANGKYSAEN 69 G +A Sbjct: 134 G-KQGPEAANV 143 >gi|332261688|ref|XP_003279897.1| PREDICTED: protein lin-28 homolog A-like [Nomascus leucogenys] Length = 208 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGF---ITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF I G DVF+H+S + G ++L EG+ V + + ++ Sbjct: 42 GICKWFNVRMGFGFLSMIARAGVALDPPVDVFVHQSKLHMEGFWSLKEGEAVEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|296448672|ref|ZP_06890536.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] gi|296253819|gb|EFH00982.1| cold-shock DNA-binding domain protein [Methylosinus trichosporium OB3b] Length = 195 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IKW++ KGYGF+ P+ + G D+ LH + + +G EG V + Q G Sbjct: 32 GAIKWFDVSKGYGFVVPD---DGGADILLHVTTLRRSGFQTAYEGARVVCE-AQKRPKGM 87 Query: 65 YSAENLKLVPKSS 77 + + ++ Sbjct: 88 QVFRVVAIDESTA 100 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64 +KW+N KG+GF+T + DD+FLH V GL L G V V+ + G Sbjct: 126 VKWFNRVKGFGFLTR---GDGTDDIFLHMETVRRYGLAELKPGDSV---LVRYGDGPKGL 179 Query: 65 YSAEN 69 + E Sbjct: 180 MATEV 184 >gi|298291596|ref|YP_003693535.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] gi|296928107|gb|ADH88916.1| cold-shock DNA-binding domain protein [Starkeya novella DSM 506] Length = 199 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G+IKW++ KGYGF+ P+G G DV LH + + G EG + + V + Sbjct: 36 GTIKWFDVSKGYGFVVPDG---GGSDVLLHVTCLRRGGFNTAQEGARIVCEAVARERG 90 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64 +KW+N +G+GF++ E +D+F+H + GL L GQ+V V+ G Sbjct: 130 VKWFNRLRGFGFLSR---GEGTEDIFVHMETLRRHGLTELRPGQMV---LVRFGPGPKGL 183 Query: 65 YSAEN 69 +AE Sbjct: 184 MAAEV 188 >gi|224074255|ref|XP_002304323.1| predicted protein [Populus trichocarpa] gi|222841755|gb|EEE79302.1| predicted protein [Populus trichocarpa] Length = 225 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62 G + ++ KG+GFI P+ D+F+H SA+ S G L E +V + + + Sbjct: 4 TGRVVRFSDKKGFGFIKPDVGD---KDLFVHHSAIKSDGGYRTLYEDDVVEFTILLTEDK 60 >gi|331240856|ref|XP_003333078.1| hypothetical protein PGTG_14864 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309312068|gb|EFP88659.1| hypothetical protein PGTG_14864 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 367 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 9/70 (12%) Query: 2 VHRGSIKWYNPDKGYGFIT-------PEGSTESGDDVFLHRSAVAS--AGLFNLTEGQLV 52 G K++N KG+GFI P + + G D+F+H S + S A +L +G++V Sbjct: 70 RRTGVCKFFNVGKGFGFIKDSRPEELPVLTGDPGTDIFVHYSCIVSCDAPYKSLLDGEVV 129 Query: 53 TYDYVQNDAN 62 Y +++ Sbjct: 130 EYYLGRSNKG 139 >gi|238062313|ref|ZP_04607022.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] gi|237884124|gb|EEP72952.1| cold-shock protein, DNA-binding [Micromonospora sp. ATCC 39149] Length = 128 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ KGYGF+T ++ G DVFL + A+ AG+ +L GQ V + V + Sbjct: 1 MPTGRVKWYDAAKGYGFVT----SDEGGDVFLPKGAL-PAGVTDLKGGQRVDFSVVDSRR 55 Query: 62 NGKYSAENLKLVP 74 A +KL+ Sbjct: 56 G--AQAMGVKLLE 66 >gi|110598176|ref|ZP_01386453.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] gi|110340190|gb|EAT58688.1| Cold-shock protein, DNA-binding [Chlorobium ferrooxidans DSM 13031] Length = 72 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60 + + +KW++ KGYGFI + + G+D+F+H S + S L + V ++ +D Sbjct: 1 MAKSVVKWFDGKKGYGFIV---NPDGGEDIFVHYSTIDSVHRFKFLNQDAEVDFEL--DD 55 Query: 61 ANGKYSAENLKLVPKSS 77 + + A +K + +S Sbjct: 56 SKQRLQARYVKEISIAS 72 >gi|299133814|ref|ZP_07027008.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] gi|298591650|gb|EFI51851.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] Length = 240 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH + + G EG + + VQ Sbjct: 76 GVIKWFDASKGYGFIVPD---NGWPDILLHVTVLRRDGFQTAYEGARLVCECVQRQKG 130 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N +G+GF++ E D+F+H + G+ L GQ + V+ Sbjct: 165 LERAQVKWFNRLRGFGFVS---CGEGTPDIFVHMETLRRYGMTELRPGQ---FVLVRYGP 218 Query: 60 DANGKYSAE 68 + G +AE Sbjct: 219 GSKGMMAAE 227 >gi|163839253|ref|YP_001623658.1| cold shock protein [Renibacterium salmoninarum ATCC 33209] gi|162952729|gb|ABY22244.1| cold shock protein [Renibacterium salmoninarum ATCC 33209] Length = 119 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ DKG+GF+T ++ G +VFLH +A+ AG+ + G + + A Sbjct: 1 MPTGKVKWFDNDKGFGFLT----SDEGQEVFLHANAL-PAGVKEIKVGTRMEFGV----A 51 Query: 62 NGKYSAENLKL 72 +GK A+ L + Sbjct: 52 DGKKGAQALSV 62 >gi|1402735|gb|AAC80235.1| major cold-shock protein [Bacillus atrophaeus] Length = 45 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 KG GFI E GDDVF+H SA+ G +L EG+ V++D Q Sbjct: 1 KKGSGFIEREA----GDDVFVHFSAIQGEGFKSLEEGESVSFDVEQGQR 45 >gi|15889107|ref|NP_354788.1| cold shock protein [Agrobacterium tumefaciens str. C58] gi|15156913|gb|AAK87573.1| cold shock protein [Agrobacterium tumefaciens str. C58] Length = 192 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI P+ DV LH S + G + EG + +Q G Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGTQDVLLHVSCLRRDGYQTILEGTRI-VALIQRRDRG 82 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T E +D+F+H + GL L GQ+V Y D Sbjct: 117 LERAIVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLVRYGDGD- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMAAE 179 >gi|238763346|ref|ZP_04624310.1| Cold shock-like protein [Yersinia kristensenii ATCC 33638] gi|238698445|gb|EEP91198.1| Cold shock-like protein [Yersinia kristensenii ATCC 33638] Length = 62 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 4/64 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N +GYGFI+P + DV++ ++A+A+ +L+EGQ V + ++ +G + Sbjct: 1 MKWFNQSEGYGFISPH---DGSLDVYVSKTAIANTKNKSLSEGQDVEFSTYRS-IHGPSA 56 Query: 67 AENL 70 A+ + Sbjct: 57 ADVI 60 >gi|91081963|ref|XP_975913.1| PREDICTED: similar to Y-box binding protein isoform 2 [Tribolium castaneum] Length = 286 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI ++ +DVF+H+SA+ + ++ +G++V + V Sbjct: 30 TGTVKWFNVKSGYGFI---NRNDTKEDVFVHQSAIIKNNPKKAVRSVGDGEIVEFSVVVG 86 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 87 E-KGNEAANV 95 >gi|330465294|ref|YP_004403037.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] gi|328808265|gb|AEB42437.1| cold-shock DNA-binding domain-containing protein [Verrucosispora maris AB-18-032] Length = 128 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ KGYGF+T ++ G DVFL ++A+ AG+ +L GQ + + V + Sbjct: 1 MPTGRVKWYDATKGYGFVT----SDEGGDVFLPKAAL-PAGVTDLKGGQRIDFSVVDSRR 55 Query: 62 NGKYSAENLKLVP 74 A +KL+ Sbjct: 56 G--TQAMGVKLLE 66 >gi|315654218|ref|ZP_07907126.1| cold-shock domain family protein [Mobiluncus curtisii ATCC 51333] gi|315657883|ref|ZP_07910763.1| cold-shock domain family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491253|gb|EFU80870.1| cold-shock domain family protein [Mobiluncus curtisii ATCC 51333] gi|315491680|gb|EFU81291.1| cold-shock domain family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 125 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ KG+GF+ G++VFLH SA+ + +L G V Y V + Sbjct: 1 MPSGKVKWYDAVKGFGFVA----GADGEEVFLHASAL-PENVVDLHPGTKVEYSVV-DGK 54 Query: 62 NGKYSAENLKLVPK 75 G+ A N+ +V K Sbjct: 55 RGRQ-AMNVTVVEK 67 >gi|227821970|ref|YP_002825941.1| cold shock protein [Sinorhizobium fredii NGR234] gi|227340970|gb|ACP25188.1| cold shock protein [Sinorhizobium fredii NGR234] Length = 192 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G IKW++ KG+GFI P+ DV LH + + G + EG V +Q G Sbjct: 27 TGVIKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTVLEGARV-VALIQKRERG 82 Query: 64 KYS 66 + Sbjct: 83 YQA 85 Score = 65.0 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G + Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLCRFG-DGEKGLMA 177 Query: 67 AE 68 AE Sbjct: 178 AE 179 >gi|15965471|ref|NP_385824.1| putative cold shock transcription regulator protein [Sinorhizobium meliloti 1021] gi|307302592|ref|ZP_07582348.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] gi|307318438|ref|ZP_07597872.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|15074652|emb|CAC46297.1| Putative cold shock transcription regulator [Sinorhizobium meliloti 1021] gi|306895778|gb|EFN26530.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti AK83] gi|306902956|gb|EFN33547.1| cold-shock DNA-binding domain protein [Sinorhizobium meliloti BL225C] Length = 192 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G IKW++ KG+GFI P+ DV LH + + G + EG V +Q G Sbjct: 27 TGVIKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTVLEGARV-VALIQKRDRG 82 Query: 64 KYS 66 + Sbjct: 83 YQA 85 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G + Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLCRFG-DGEKGLMA 177 Query: 67 AE 68 AE Sbjct: 178 AE 179 >gi|88802865|ref|ZP_01118392.1| cold shock protein [Polaribacter irgensii 23-P] gi|88781723|gb|EAR12901.1| cold shock protein [Polaribacter irgensii 23-P] Length = 63 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFIT EG D F+H S + + EG V +D + + Sbjct: 1 MSKGTVKFFNESKGFGFITEEGVD---KDHFVHISGLVDE----IREGDQVEFDLQEGNK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|300119946|gb|ADJ67998.1| Y-box protein [Samia ricini] Length = 264 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ + ++ +G+ V + V + Sbjct: 39 GTVKWFNVKSGYGFI---NRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 95 Query: 61 ANGKYSAEN 69 G +A Sbjct: 96 -KGYEAARV 103 >gi|283783195|ref|YP_003373949.1| cold-shock DNA-binding domain protein [Gardnerella vaginalis 409-05] gi|283441802|gb|ADB14268.1| cold-shock DNA-binding domain protein [Gardnerella vaginalis 409-05] Length = 129 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++WY+ KGYGFI + G DVFL +A+ + +L +G V + ++ Sbjct: 1 MPNGRVRWYDTQKGYGFIVGD----DGKDVFLPAAALPVT-VKSLHKGTRVEFSVIEGRK 55 Query: 62 NGKYSAENL 70 + N+ Sbjct: 56 GPQAMGLNV 64 >gi|298345620|ref|YP_003718307.1| cold-shock DNA-binding domain-containing protein [Mobiluncus curtisii ATCC 43063] gi|304390691|ref|ZP_07372644.1| cold-shock domain family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235681|gb|ADI66813.1| cold-shock DNA-binding domain protein [Mobiluncus curtisii ATCC 43063] gi|304326447|gb|EFL93692.1| cold-shock domain family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 125 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ KG+GF+ G++VFLH SA+ + +L G V Y V + Sbjct: 1 MPSGKVKWYDAVKGFGFVA----GADGEEVFLHASAL-PENVVDLHPGTKVEYSVV-DGK 54 Query: 62 NGKYSAENLKLVPK 75 G+ A N+ +V K Sbjct: 55 RGRQ-AMNVTVVEK 67 >gi|325287795|ref|YP_004263585.1| cold-shock DNA-binding domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323249|gb|ADY30714.1| cold-shock DNA-binding domain protein [Cellulophaga lytica DSM 7489] Length = 63 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFIT EG D F+H S + + EG +V YD + + Sbjct: 1 MSKGTVKFFNDTKGFGFITEEGVE---KDHFVHISGLVDE----IREGDVVEYDLQEGNK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|319955388|ref|YP_004166655.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] gi|319424048|gb|ADV51157.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] Length = 63 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFIT EG D F+H S + + + EG +V +D + + Sbjct: 1 MSKGTVKFFNDAKGFGFITEEGVE---KDHFVHISGL----IDEVREGDVVEFDLQEGNK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|297677568|ref|XP_002816670.1| PREDICTED: protein lin-28 homolog A-like [Pongo abelii] Length = 277 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ +S DVF+H+S + +L EG+ V + + ++ Sbjct: 110 GICKWFNVRMGFGFLSMTARAGVTLDSPVDVFVHQSKLHMERFRSLKEGEAVEFTFKKSA 169 Query: 61 AN 62 Sbjct: 170 KG 171 >gi|150396662|ref|YP_001327129.1| cold-shock DNA-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150028177|gb|ABR60294.1| putative cold-shock DNA-binding domain protein [Sinorhizobium medicae WSM419] Length = 192 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G IKW++ KG+GFI P+ DV LH + + G + EG V +Q G Sbjct: 27 TGVIKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTVLEGARV-VALIQKRDRG 82 Query: 64 KYS 66 + Sbjct: 83 YQA 85 Score = 65.0 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T E +D+F+H + GL L GQ+V + + G + Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVVLCRFG-DGEKGLMA 177 Query: 67 AE 68 AE Sbjct: 178 AE 179 >gi|163788488|ref|ZP_02182934.1| cold shock protein [Flavobacteriales bacterium ALC-1] gi|159876808|gb|EDP70866.1| cold shock protein [Flavobacteriales bacterium ALC-1] Length = 63 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFIT EGS F+H S + + EG V YD + Sbjct: 1 MSTGTVKFFNDAKGFGFITEEGSNTEH---FVHISGLVDE----IREGDNVEYDLTEGKK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAINVKVI 63 >gi|116251862|ref|YP_767700.1| cold shock protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256510|emb|CAK07594.1| putative cold shock protein [Rhizobium leguminosarum bv. viciae 3841] Length = 192 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KG+GFI P+ DV LH + + G + EG + +Q G Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGLQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERG 82 Query: 64 KYS 66 + Sbjct: 83 YQA 85 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N KG+GF+T E +D+F+H + GL L GQ+V V+ + Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQVV---LVRFGD 170 Query: 60 DANGKYSAE 68 G +AE Sbjct: 171 GEKGLMAAE 179 >gi|91977002|ref|YP_569661.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris BisB5] gi|91683458|gb|ABE39760.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris BisB5] Length = 219 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGFI P+ DV LH + + G EG + + VQ A G Sbjct: 55 GVIKWFDASKGYGFIVPD---NGAADVLLHVTVLRRDGYQTAYEGARIVVECVQR-AKGY 110 Query: 65 YSAENLKLVPKSS 77 + + + ++ Sbjct: 111 QAFRVVSMDESTA 123 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59 + R +KW+N +G+GF+T E D+F+H + G+ L GQ LV + Sbjct: 144 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFG---P 197 Query: 60 DANGKYSAE 68 + G +AE Sbjct: 198 GSKGMMAAE 206 >gi|222085261|ref|YP_002543791.1| cold shock protein [Agrobacterium radiobacter K84] gi|221722709|gb|ACM25865.1| cold shock protein [Agrobacterium radiobacter K84] Length = 68 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K ++ +KGYGFI P T+ +F+H V +GL L +GQ + ++ Q+ Sbjct: 1 MFNGIVKNFDLEKGYGFIQP---TDGSVAIFVHAKIVVKSGLETLKKGQKLIFEIEQDGM 57 Query: 62 NGKYSAENLKL 72 G+ S L+L Sbjct: 58 -GRSSISKLRL 67 >gi|330993460|ref|ZP_08317395.1| Cold shock-like protein CspA [Gluconacetobacter sp. SXCC-1] gi|329759490|gb|EGG75999.1| Cold shock-like protein CspA [Gluconacetobacter sp. SXCC-1] Length = 49 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 25 TESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 + G DVF+H +AV +AGL L E Q V+YD GK +A NLK + Sbjct: 3 DDGGKDVFVHITAVQAAGLRGLNEDQAVSYDIAME--RGKAAATNLKAL 49 >gi|1483311|emb|CAA68079.1| Y-box protein [Dugesia japonica] Length = 266 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G +KW+N +GYGF+ + E D+F+H+SA+ + ++ EG+ + +D V+ Sbjct: 30 TGKVKWFNVKRGYGFVCRNDNQE---DIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVKG 86 Query: 60 DANGKYSAEN 69 A G +A Sbjct: 87 -AKGNEAANV 95 >gi|23007963|ref|ZP_00049605.1| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1] Length = 202 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KG+GFI P+ + DV LH + + G +EG + + VQ A G Sbjct: 39 GRIKWFDVSKGFGFILPD---DGSADVLLHITCLRRDGHQAASEGARIVVEAVQR-ARGW 94 Query: 65 YSAENLKL 72 + + L Sbjct: 95 QAHRVISL 102 Score = 60.7 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 9/69 (13%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64 +KW+N +G+GF++ + D+F+H + G+ L G+ V V+ + + G Sbjct: 133 VKWFNRLRGFGFLSR---GDGTPDIFVHMETLRRYGIAELKPGEQV---LVRYGDGSKGA 186 Query: 65 YSAENLKLV 73 +AE ++LV Sbjct: 187 MAAE-VRLV 194 >gi|69246243|ref|ZP_00603856.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] gi|68195344|gb|EAN09793.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] Length = 35 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 4/39 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40 + G++KW+N +KG+GFI+ E G DVF+H SA+ Sbjct: 1 MENGTVKWFNAEKGFGFISRE----DGSDVFVHFSAIPR 35 >gi|269796415|ref|YP_003315870.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM 10542] gi|269098600|gb|ACZ23036.1| cold-shock DNA-binding protein family [Sanguibacter keddieii DSM 10542] Length = 127 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K+++ ++G+GFI ++ G+ VFLH SA+ G+ G V + + Sbjct: 1 MPTGKVKFFDTERGFGFIA----SDDGEQVFLHASAL-PEGVTAPKPGAKVEFGVA-DGR 54 Query: 62 NGKYSAENLKLVP 74 G + L P Sbjct: 55 KGPQALSVTFLDP 67 >gi|213648751|ref|ZP_03378804.1| putative cold-shock protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 39 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 3/37 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40 G +KW+NP+KG+GFITP + DVF+H SA+ S Sbjct: 6 TGLVKWFNPEKGFGFITP---KDGSKDVFVHFSAIQS 39 >gi|13470456|ref|NP_102024.1| cold shock protein [Mesorhizobium loti MAFF303099] gi|14021197|dbj|BAB47810.1| cold shock protein [Mesorhizobium loti MAFF303099] Length = 181 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G+IKW++ KGYGFI P+ D+ LH + + G EG V Q D Sbjct: 17 GAIKWFDVAKGYGFILPDDGVSG--DILLHVTCLRRDGFQTALEGARVVCLVKQGDRG 72 Score = 65.4 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + D Sbjct: 107 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRYGITELRPGQVVLVRFGRGD- 162 Query: 62 NGKYSAE 68 G +AE Sbjct: 163 KGLMAAE 169 >gi|260460741|ref|ZP_05808991.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] gi|259033318|gb|EEW34579.1| cold-shock DNA-binding domain protein [Mesorhizobium opportunistum WSM2075] Length = 198 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + D Sbjct: 124 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRYGITELRPGQVVLVRFGRGD- 179 Query: 62 NGKYSAE 68 G +AE Sbjct: 180 KGLMAAE 186 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IKW++ KGYGFI P+ D+ LH + + G EG V V+ G Sbjct: 34 GAIKWFDVAKGYGFILPDDGISG--DILLHVTCLRRDGFQTALEGARVVC-LVKQGERGL 90 Query: 65 YSAENLKL 72 + L + Sbjct: 91 QAFRVLSM 98 >gi|188591387|ref|YP_001795986.1| conserved hypothetical protein, DUF1294; Cold shock protein domain [Cupriavidus taiwanensis] gi|170938782|emb|CAP63775.1| conserved hypothetical protein, DUF1294; Cold shock protein domain [Cupriavidus taiwanensis LMG 19424] Length = 190 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K ++ DKG+GFI T DVF H +A+ + + T G V+++ + Sbjct: 1 MRKAGRVKTWHADKGFGFINVHADT----DVFFHITALQTRAV-TPTSGDRVSFELGKG- 54 Query: 61 ANGKYSAENLKLV 73 +G+ A N+ +V Sbjct: 55 RDGRPQALNVAIV 67 >gi|308806684|ref|XP_003080653.1| glycogen debranching enzyme (ISS) [Ostreococcus tauri] gi|116059114|emb|CAL54821.1| glycogen debranching enzyme (ISS) [Ostreococcus tauri] Length = 141 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 12/71 (16%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE------GQLVTYDYVQND 60 + W+N +GYG++ P + +DVF+H+S + G ++ E G + ++ ++ Sbjct: 44 VTWFNCVRGYGYVRPH---DGSEDVFVHQSELQMDGFRSVWEVRLQQAGDEIEFELDDDE 100 Query: 61 ANGKYSAENLK 71 A+N+ Sbjct: 101 RR---RAKNVT 108 >gi|85717340|ref|ZP_01048292.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] gi|85695815|gb|EAQ33721.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] Length = 202 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ DV LH + + G EG + D VQ Sbjct: 38 GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVCDCVQRAKG 92 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N +G+GF+T + D+F+H + G+ L GQ + V+ Sbjct: 127 LERAQVKWFNRLRGFGFLTR---GDGTPDIFVHMETLRRFGITELRPGQ---FVLVRFGP 180 Query: 60 DANGKYSAEN 69 + G +AE Sbjct: 181 GSKGMMAAEV 190 >gi|149278548|ref|ZP_01884684.1| cold shock protein [Pedobacter sp. BAL39] gi|149230543|gb|EDM35926.1| cold shock protein [Pedobacter sp. BAL39] Length = 63 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFI P ++F+H S + + N+ E V+YD Q Sbjct: 1 MQQGTVKFFNETKGFGFIVP---ANGDSEIFVHSSGL----MDNIRENDSVSYDVEQGKK 53 Query: 62 NGKYSAENLKL 72 +A N+K+ Sbjct: 54 G--LNAINVKI 62 >gi|86750055|ref|YP_486551.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris HaA2] gi|86573083|gb|ABD07640.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris HaA2] Length = 221 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGFI P+ DV LH + + G EG + + VQ A G Sbjct: 57 GVIKWFDASKGYGFIVPD---NGAADVLLHVTVLRRDGYQTAYEGARIVVECVQR-AKGY 112 Query: 65 YSAENLKLVPKSS 77 + + + ++ Sbjct: 113 QAFRVVSMDESTA 125 Score = 58.0 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59 + R +KW+N +G+GF+T E D+F+H + G+ L GQ LV + Sbjct: 146 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFG---P 199 Query: 60 DANGKYSAE 68 + G +AE Sbjct: 200 GSKGMMAAE 208 >gi|56697005|ref|YP_167367.1| cold shock DNA-binding domain-containing protein [Ruegeria pomeroyi DSS-3] gi|56678742|gb|AAV95408.1| cold shock DNA-binding domain protein [Ruegeria pomeroyi DSS-3] Length = 175 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++P KGYGF+ E E G D+ LH + + + G ++ +G + G Sbjct: 12 RGRVKWFDPTKGYGFVVAE---EGGPDILLHVNVLRNFGQSSVADGAAIEI-MTHRTDRG 67 Query: 64 KYSAENLKLVPKS 76 + E + +VP Sbjct: 68 VQAVEVVSIVPPE 80 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF GS+E DVFLH + +GL +L G+ + + + G+ Sbjct: 107 RVKWFDKGKGFGFANVFGSSE---DVFLHIEVLRQSGLSDLQPGEALAMRVI-DGKRGRM 162 Query: 66 SAENL 70 +AE L Sbjct: 163 AAEVL 167 >gi|300676082|gb|ADK26463.1| lin-28 [Sus scrofa] Length = 205 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ + DV +H+S + G +L EG+ V + + ++ Sbjct: 38 GICKWFNVRMGFGFLSMTARAGVALDPPVDVLVHQSKLHMEGFRSLKEGEAVEFTFKKSA 97 Query: 61 AN 62 Sbjct: 98 KG 99 >gi|186471680|ref|YP_001862998.1| cold-shock DNA-binding domain-containing protein [Burkholderia phymatum STM815] gi|184197989|gb|ACC75952.1| cold-shock DNA-binding domain protein [Burkholderia phymatum STM815] Length = 61 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 GF SGDD+F H S V + G +L EGQ V++D Q GK +A N++ + Sbjct: 7 GFWVHHTGRRSGDDLFAHFSEVQAQGFKSLQEGQRVSFDVKQG-PKGKQAA-NIQPI 61 >gi|257387599|ref|YP_003177372.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] gi|257169906|gb|ACV47665.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] Length = 64 Score = 65.4 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI E + + DVF H + G +L EGQ V +D VQ D Sbjct: 1 MAQGTVDFFNDTGGYGFIDTEDADD---DVFFHMEDI---GGPDLEEGQEVEFDIVQADK 54 Query: 62 NGKYSAENLKLV 73 + AENL + Sbjct: 55 GPR--AENLTRL 64 >gi|148725317|emb|CAN88784.1| novel protein (zgc:55584) [Danio rerio] Length = 102 Score = 65.4 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ EG DVF+H+S + G +L EG+ V + + ++ Sbjct: 41 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSS 100 Query: 61 AN 62 Sbjct: 101 KG 102 >gi|123301101|dbj|BAF45318.1| Y-box protein [Bombyx mori] Length = 272 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 7/62 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+A + ++ +G+ V + V + Sbjct: 40 GTVKWFNVKSGYGFI---NRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96 Query: 61 AN 62 Sbjct: 97 KG 98 >gi|27379521|ref|NP_771050.1| cold shock protein [Bradyrhizobium japonicum USDA 110] gi|27352673|dbj|BAC49675.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 224 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGFI P+ DV LH + + G EG + + +Q A G Sbjct: 60 GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGFQTAYEGARIVVECIQR-AKGY 115 Query: 65 YSAENLKLVPKSS 77 + + + ++ Sbjct: 116 QAFRVVSMDESTA 128 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59 + R +KW+N +G+GF+T E D+F+H + G+ L GQ LV + Sbjct: 149 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQYVLVRFG---P 202 Query: 60 DANGKYSAE 68 + G +AE Sbjct: 203 GSKGMMAAE 211 >gi|222085830|ref|YP_002544361.1| cold shock protein [Agrobacterium radiobacter K84] gi|221723278|gb|ACM26434.1| cold shock protein [Agrobacterium radiobacter K84] Length = 192 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GFI P+ DV LH + + G + EG + +Q G Sbjct: 28 GVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI-VALIQRRERGY 83 Query: 65 YS 66 + Sbjct: 84 QA 85 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N KG+GF+T E +D+F+H + GL L GQ+V V+ Sbjct: 117 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLAELRPGQVV---LVRFGP 170 Query: 60 DANGKYSAE 68 G +AE Sbjct: 171 GEKGLMAAE 179 >gi|227487732|ref|ZP_03918048.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227542371|ref|ZP_03972420.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227092234|gb|EEI27546.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227181569|gb|EEI62541.1| cold shock protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 129 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS-AVASAGLFNLTEGQLVTYDYVQND 60 + G +KWY+PDKG+GF + G + +H S +V G+ L GQ + +D+ + Sbjct: 1 MPIGKVKWYDPDKGFGFASNPGQED------VHISKSVLPEGVDTLHPGQRIEFDFAASG 54 Query: 61 ANGK 64 + Sbjct: 55 RGPQ 58 >gi|268574654|ref|XP_002642306.1| C. briggsae CBR-CEY-4 protein [Caenorhabditis briggsae] gi|187025308|emb|CAP35775.1| CBR-CEY-4 protein [Caenorhabditis briggsae AF16] Length = 286 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KW++ YGF+ E + + +D F+H++A++ + L L E + V +D V+ Sbjct: 90 KGYVKWFSVRGRYGFVAREKAADETEDFFVHQTAISKSSTIKYYLRTLEEDEPVVFDIVE 149 Query: 59 NDANGKYSAEN 69 G +A Sbjct: 150 G-RKGPEAANV 159 >gi|148255425|ref|YP_001240010.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp. BTAi1] gi|146407598|gb|ABQ36104.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1] Length = 217 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGFI P+ DV LH + + G EG + + VQ A G Sbjct: 53 GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVVECVQR-AKGY 108 Query: 65 YSAENLKLVPKSS 77 + + + ++ Sbjct: 109 QAFRIVSMDESTA 121 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V V+ Sbjct: 142 LERAQVKWFNRLRGFGFVT---CGEGTPDIFVHMETLRRFGMTELRPGQWV---LVRYGP 195 Query: 60 DANGKYSAE 68 + G +AE Sbjct: 196 GSKGMMAAE 204 >gi|229819345|ref|YP_002880871.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM 12333] gi|229565258|gb|ACQ79109.1| cold-shock DNA-binding domain protein [Beutenbergia cavernae DSM 12333] Length = 127 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K+++ D+G+GFI + G +VFLH SA+ AG + G V + + Sbjct: 1 MPTGKVKFFDADRGFGFIA----ADDGGEVFLHASAL-PAGSPSPKPGTRVDFGIA-DGR 54 Query: 62 NGKYSAENLKLVPKSS 77 G + L P S Sbjct: 55 RGPQALSVTILDPAPS 70 >gi|163736548|ref|ZP_02143967.1| hypothetical protein RGBS107_15491 [Phaeobacter gallaeciensis BS107] gi|161390418|gb|EDQ14768.1| hypothetical protein RGBS107_15491 [Phaeobacter gallaeciensis BS107] Length = 178 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++P KG+GF+ + E G D+ LH + + + G ++ +G V G Sbjct: 12 RGLVKWFDPTKGFGFVVSD---EGGPDILLHVNVLRNFGQSSIADGAEVEL-VTHRTERG 67 Query: 64 KYSAENLKLVPKSSN 78 + E L + P + + Sbjct: 68 VQAVEVLSITPPARD 82 Score = 56.1 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G E DVFLH + +GL L G+ + + + G+ Sbjct: 107 RVKWFDKGKGFGFANVFGRDE---DVFLHVEVLRQSGLSELQPGEALGMRVI-DGKRGRM 162 Query: 66 SAENL 70 + E L Sbjct: 163 AVEVL 167 >gi|320591342|gb|EFX03781.1| cold-shock protein [Grosmannia clavigera kw1407] Length = 68 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K +N KG+GFIT +++ D + +++ + G L G+ V + Sbjct: 1 MTTGTVKSFNEAKGFGFIT---ASDGSGDYYAQFASIVTHGFKTLKVGEHVNF-VPSTGP 56 Query: 62 NGKYSAENLKLV 73 +G+ A+N++++ Sbjct: 57 HGRE-AKNIRII 67 >gi|268566689|ref|XP_002639788.1| Hypothetical protein CBG02238 [Caenorhabditis briggsae] gi|187037584|emb|CAP23334.1| hypothetical protein CBG_02238 [Caenorhabditis briggsae AF16] Length = 263 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-----GLFNLTEGQLVTYDYVQ 58 +G +KWY+ + YGFI+ + DVF+H++A+A + L L + + V +D V Sbjct: 62 QGKVKWYSVLRRYGFISR---NDGEKDVFVHQTAIAKSLTEKFYLRTLGDEEEVLFDLV- 117 Query: 59 NDANGKYSAEN 69 + NG +A Sbjct: 118 DGKNGPEAANV 128 >gi|312113552|ref|YP_004011148.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311218681|gb|ADP70049.1| cold-shock DNA-binding domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 191 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KG+GFI P+G D+ +H + + G EG + + ++ D G Sbjct: 28 GHIKWFDVSKGFGFIVPDGGL---PDILIHVTVLRRDGYQTAYEGARIVCEVLRRD-RGL 83 Query: 65 YSAENLKLVPKSS 77 + +++ ++ Sbjct: 84 QAFRVIEMDESTA 96 Score = 64.2 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 R +KW+N KG+GF+T TE D+F+H + G L GQ+V Y D Sbjct: 117 QRAMVKWFNRLKGFGFLTRGAGTE---DIFVHMETLRRFGFAELRPGQIVQVRYGHGD-K 172 Query: 63 GKYSAE 68 G +AE Sbjct: 173 GLMAAE 178 >gi|146340625|ref|YP_001205673.1| putative DNA binding cold shock protein, CspA-like [Bradyrhizobium sp. ORS278] gi|146193431|emb|CAL77447.1| Putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium sp. ORS278] Length = 217 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGFI P+ DV LH + + G EG + + VQ A G Sbjct: 53 GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVVECVQR-AKGY 108 Query: 65 YSAENLKLVPKSS 77 + + + ++ Sbjct: 109 QAFRIVSMDESTA 121 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N +G+GF+T E D+F+H + G+ L GQ V V+ Sbjct: 142 LERAQVKWFNRLRGFGFVT---CGEGTPDIFVHMETLRRFGMTELRPGQWV---LVRYGP 195 Query: 60 DANGKYSAE 68 + G +AE Sbjct: 196 GSKGMMAAE 204 >gi|270284256|ref|ZP_06193907.1| cold-shock domain protein [Bifidobacterium gallicum DSM 20093] gi|270277415|gb|EFA23269.1| cold-shock domain protein [Bifidobacterium gallicum DSM 20093] Length = 151 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G I+WY+ +KGYGFI E G DVFL A+ AG+ L +G V Y + + Sbjct: 23 MPSGKIRWYDANKGYGFIE----NEEGKDVFLPAMAL-PAGVTTLRKGTKVEYSVI-DGR 76 Query: 62 NGKYS 66 G + Sbjct: 77 KGPQA 81 >gi|134101948|ref|YP_001107609.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|291007041|ref|ZP_06565014.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133914571|emb|CAM04684.1| putative DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 150 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++ KGYGFI P+ G+DVFLH S + L G V ++ V + Sbjct: 1 MKTGTVVRFDGIKGYGFIAPDA---GGEDVFLHASILDEELKEVLRGGMRVEFEAVPGNQ 57 Query: 62 NGKYSAENL 70 K NL Sbjct: 58 GTKAMTVNL 66 >gi|149372203|ref|ZP_01891473.1| cold shock protein [unidentified eubacterium SCB49] gi|149354970|gb|EDM43532.1| cold shock protein [unidentified eubacterium SCB49] Length = 63 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G +K++N KG+GFIT EG D F+H S + + + EG V ++ + + Sbjct: 1 MNKGIVKFFNDSKGFGFITEEGQE---KDHFVHISGL----IDEVREGDEVEFELKEGNK 53 Query: 62 NGKYSAENLKLV 73 +A N++++ Sbjct: 54 G--LNAVNVRVL 63 >gi|257387598|ref|YP_003177371.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] gi|257169905|gb|ACV47664.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] Length = 64 Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++N GYGFI E + E DVF H + G +L EGQ V +D VQ D Sbjct: 1 MATGTVDFFNDTGGYGFIDTEDADE---DVFFHMEDI---GGPDLEEGQEVEFDIVQADK 54 Query: 62 NGKYSAENLKLV 73 + AENL + Sbjct: 55 GPR--AENLTRL 64 >gi|110667350|ref|YP_657161.1| cold shock protein [Haloquadratum walsbyi DSM 16790] gi|109625097|emb|CAJ51516.1| probable cold shock protein [Haloquadratum walsbyi DSM 16790] Length = 98 Score = 65.0 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI+ E + E DVF H + G +L EGQ + ++ VQ D Sbjct: 35 MAQGTVDFFNDTGGYGFISTEDADE---DVFFHMEDI---GGPDLEEGQDLEFEIVQADK 88 Query: 62 NGKYSAENLKLV 73 + A+N++ + Sbjct: 89 GPR--AKNVERL 98 >gi|254477246|ref|ZP_05090632.1| cold shock DNA-binding domain protein [Ruegeria sp. R11] gi|214031489|gb|EEB72324.1| cold shock DNA-binding domain protein [Ruegeria sp. R11] Length = 171 Score = 65.0 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++P KG+GF+ + E G D+ LH + + + G ++ +G V G Sbjct: 5 RGLVKWFDPTKGFGFVVSD---EGGPDILLHVNVLRNFGQSSIADGAQVEL-VTHRTERG 60 Query: 64 KYSAENLKLVPKSSN 78 + E + + P + Sbjct: 61 VQAVEVISITPPERD 75 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G E DVFLH + +GL L G+ + ++ G+ Sbjct: 100 RVKWFDKGKGFGFANVFGRPE---DVFLHVEVLRQSGLSELQPGEALGMRVIEG-KRGRM 155 Query: 66 SAENL 70 + E L Sbjct: 156 AVEVL 160 >gi|241895732|ref|ZP_04783028.1| cold shock protein CspA [Weissella paramesenteroides ATCC 33313] gi|241871099|gb|EER74850.1| cold shock protein CspA [Weissella paramesenteroides ATCC 33313] Length = 69 Score = 65.0 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K + DKG+GFI + DDVF+H SA+ + + +LT GQ V VQ + Sbjct: 6 GYVKTWQSDKGFGFIE----LKGEDDVFVHFSAIQTPRVRDLTVGQEVKLVVVQGIRGPQ 61 Query: 65 YSAENL 70 +A + Sbjct: 62 AAAVEV 67 >gi|120435931|ref|YP_861617.1| cold shock-like protein [Gramella forsetii KT0803] gi|120435932|ref|YP_861618.1| cold shock-like protein [Gramella forsetii KT0803] gi|117578081|emb|CAL66550.1| cold shock-like protein [Gramella forsetii KT0803] gi|117578082|emb|CAL66551.1| cold shock-like protein [Gramella forsetii KT0803] Length = 64 Score = 65.0 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KG+GFI + S E D+F+H S + + + E V ++ Q Sbjct: 1 MQEGKVKFFNNTKGFGFIKADDSNE---DIFVHSSGL----IDEIREDDRVQFEVEQGKK 53 Query: 62 NGKYSAENLKLV 73 +A N++++ Sbjct: 54 G--LNAVNVEVI 63 >gi|75675801|ref|YP_318222.1| cold-shock protein, DNA-binding [Nitrobacter winogradskyi Nb-255] gi|74420671|gb|ABA04870.1| cold-shock DNA-binding protein family [Nitrobacter winogradskyi Nb-255] Length = 217 Score = 65.0 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ DV LH + + G EG + D VQ Sbjct: 53 GVIKWFDASKGYGFIVPD---NGWPDVLLHVTVLRRDGYQTAYEGARLVCDCVQRAKG 107 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N +G+GF+T E D+F+H + G+ L GQ + V+ Sbjct: 142 LERAQVKWFNRLRGFGFLTR---GEGTPDIFVHMETLRRFGITELRPGQ---FVLVRFGP 195 Query: 60 DANGKYSAEN 69 + G +AE Sbjct: 196 GSKGMMAAEV 205 >gi|62290174|ref|YP_221967.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|82700096|ref|YP_414670.1| cold shock DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189024409|ref|YP_001935177.1| Cold-shock DNA-binding domain protein [Brucella abortus S19] gi|237815683|ref|ZP_04594680.1| Cold shock-like protein cspG [Brucella abortus str. 2308 A] gi|254689477|ref|ZP_05152731.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 6 str. 870] gi|254697615|ref|ZP_05159443.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730506|ref|ZP_05189084.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 4 str. 292] gi|256257725|ref|ZP_05463261.1| Cold-shock DNA-binding domain protein [Brucella abortus bv. 9 str. C68] gi|260546718|ref|ZP_05822457.1| cold-shock DNA-binding domain-containing protein [Brucella abortus NCTC 8038] gi|260755001|ref|ZP_05867349.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260758217|ref|ZP_05870565.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260762044|ref|ZP_05874387.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884011|ref|ZP_05895625.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297248567|ref|ZP_06932285.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv. 5 str. B3196] gi|62196306|gb|AAX74606.1| cold-shock family protein [Brucella abortus bv. 1 str. 9-941] gi|82616197|emb|CAJ11240.1| Cold-shock DNA-binding domain [Brucella melitensis biovar Abortus 2308] gi|189019981|gb|ACD72703.1| Cold-shock DNA-binding domain protein [Brucella abortus S19] gi|237788981|gb|EEP63192.1| Cold shock-like protein cspG [Brucella abortus str. 2308 A] gi|260095768|gb|EEW79645.1| cold-shock DNA-binding domain-containing protein [Brucella abortus NCTC 8038] gi|260668535|gb|EEX55475.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672476|gb|EEX59297.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675109|gb|EEX61930.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260873539|gb|EEX80608.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297175736|gb|EFH35083.1| cold shock protein (beta-ribbon, CspA family) [Brucella abortus bv. 5 str. B3196] Length = 193 Score = 65.0 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV--TYDYVQNDANGK 64 +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + G Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFG---TGEKGL 176 Query: 65 YSAE 68 +AE Sbjct: 177 MAAE 180 >gi|116669355|ref|YP_830288.1| cold-shock DNA-binding protein family protein [Arthrobacter sp. FB24] gi|116609464|gb|ABK02188.1| cold-shock DNA-binding protein family [Arthrobacter sp. FB24] Length = 127 Score = 65.0 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF+ E G +VFL +SA+ G+ L G V + A Sbjct: 1 MPTGKVKWYDKEKGFGFLA----GEDGQEVFLPKSAL-PEGVTELKAGTRVEFGV----A 51 Query: 62 NGKYSAENLKL 72 +G+ A+ L L Sbjct: 52 DGRKGAQALGL 62 >gi|327402092|ref|YP_004342930.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM 16823] gi|327317600|gb|AEA42092.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM 16823] Length = 64 Score = 65.0 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFI + +S D F+H S + + EG V ++ + Sbjct: 1 MNKGTVKFFNETKGFGFIKED---DSAKDHFVHVSGLVDE----IREGDQVEFELEEGKR 53 Query: 62 NGKYSAENLKLV 73 +A N++++ Sbjct: 54 G--VNAVNVRVI 63 >gi|170749143|ref|YP_001755403.1| cold-shock DNA-binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170655665|gb|ACB24720.1| cold-shock DNA-binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 201 Score = 65.0 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KG+GFI P+ + D+ LH + + G +EG + + V+ G Sbjct: 38 GRIKWFDVSKGFGFIVPD---DGAPDILLHVTCLRRDGYQAASEGARIVVEAVER-PRGW 93 Query: 65 YSAENLKL 72 + + L Sbjct: 94 QAFRVISL 101 Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + +KW+N +G+GF+T + D+F+H + G+ L G+ V V+ + Sbjct: 127 LETAVVKWFNRLRGFGFLTR---GDGTPDIFVHMETLRRYGIAELKPGESV---LVRYGD 180 Query: 60 DANGKYSAEN 69 + G +AE Sbjct: 181 GSKGVMAAEV 190 >gi|92117669|ref|YP_577398.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91800563|gb|ABE62938.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis X14] Length = 217 Score = 65.0 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ DV LH + + G + EG + + VQ Sbjct: 53 GVIKWFDASKGYGFIIPD---NGWSDVLLHVTVLRRDGYQTVYEGARLICECVQRAKG 107 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--N 59 + R +KW+N +G+GF+T E D+F+H + G+ L GQ + V+ Sbjct: 142 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRFGMTELRPGQ---FVLVRFGP 195 Query: 60 DANGKYSAE 68 + G +AE Sbjct: 196 GSKGMMAAE 204 >gi|254464203|ref|ZP_05077614.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium Y4I] gi|206685111|gb|EDZ45593.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium Y4I] Length = 179 Score = 65.0 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KGYGF+ + E G D+ LH + + + G ++ +G + G Sbjct: 12 QGLVKWFDPAKGYGFVVSD---EGGPDILLHVNVLRNFGQSSVADGARIEI-VTHQTGRG 67 Query: 64 KYSAENLKLVPKSSN 78 + E L ++P + Sbjct: 68 VQAVEVLSIMPPERD 82 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 8/77 (10%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G G+DVFLH + +GL +L G+ + + + G+ Sbjct: 107 RVKWFDKGKGFGFANVFGR---GEDVFLHVEVLRQSGLADLQPGEALAMRVI-DGKRGRM 162 Query: 66 SAENL----KLVPKSSN 78 + E L L+P S++ Sbjct: 163 AVEVLAWEAALMPGSAD 179 >gi|189502046|ref|YP_001957763.1| hypothetical protein Aasi_0637 [Candidatus Amoebophilus asiaticus 5a2] gi|189497487|gb|ACE06034.1| hypothetical protein Aasi_0637 [Candidatus Amoebophilus asiaticus 5a2] Length = 67 Score = 65.0 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 9/73 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL--TEGQLVTYDYVQN 59 + G+IK++N KGYGFIT + D F+H +A+ + L EG VT++ V+ Sbjct: 1 MKTGTIKFFNESKGYGFIT----DSASQDHFVHVTALHDE-VKELDMKEGHKVTFETVET 55 Query: 60 DANGKYSAENLKL 72 +A N++L Sbjct: 56 SRG--SNATNVRL 66 >gi|145594602|ref|YP_001158899.1| cold-shock protein, DNA-binding [Salinispora tropica CNB-440] gi|145303939|gb|ABP54521.1| cold-shock DNA-binding protein family [Salinispora tropica CNB-440] Length = 137 Score = 65.0 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G+I ++ +GYGFI P G GDDVF+H + + G V+Y+ VQ++ Sbjct: 1 MEKGTIVRFDDVRGYGFIAPFG---GGDDVFVHANDF-GDQRHAVAAGMRVSYEVVQSER 56 Query: 62 NGKYSAENLKLVPKSSN 78 K ++ L+ P + N Sbjct: 57 GLKVASVVLETAPAAPN 73 >gi|146277100|ref|YP_001167259.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555341|gb|ABP69954.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17025] Length = 180 Score = 65.0 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KG+GF G +E DVF+H + +G +L G+ V ++ Sbjct: 103 LEPGRVKWFDKGKGFGFANVFGRSE---DVFIHVEVLRMSGFADLAAGEAVALRIIEG-R 158 Query: 62 NGKYSAENLK 71 G+ + + + Sbjct: 159 RGRMAVQVVS 168 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GFI E E+G D+ LH + + + G ++ +G +T VQ+ G Sbjct: 13 GRVKWFDPAKGFGFIVTE---ENGADILLHANVLRNYGQSSVADGAGITVK-VQSTQRGV 68 Query: 65 YSAENLKLVPKSS 77 + E +++ P + Sbjct: 69 QAVEVVEIEPPAG 81 >gi|268562898|ref|XP_002638697.1| Hypothetical protein CBG11894 [Caenorhabditis briggsae] gi|187029975|emb|CAP30963.1| hypothetical protein CBG_11894 [Caenorhabditis briggsae AF16] Length = 258 Score = 65.0 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KWY+ + YGFI+ + DVF+H++A+A + L L + + + +D V+ Sbjct: 62 QGKVKWYSVLRRYGFISR---NDGEKDVFVHQTAIAKSNTEKFYLRTLADEEDIVFDLVE 118 Query: 59 NDANGKYSAEN 69 NG +A Sbjct: 119 G-KNGPEAANV 128 >gi|56462192|gb|AAV91379.1| hypothetical protein 18 [Lonomia obliqua] Length = 254 Score = 65.0 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 7/62 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ + ++ +G++V + V + Sbjct: 31 GTVKWFNVKSGYGFI---NRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEVVEFAVVAGE 87 Query: 61 AN 62 Sbjct: 88 KG 89 >gi|312892429|ref|ZP_07751924.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] gi|311295213|gb|EFQ72387.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] Length = 65 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 9/73 (12%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K++N KG+GFI P + ++VF+H S + + + E V Y + Sbjct: 1 MQKEGTVKFFNETKGFGFIIP---ADGSEEVFVHSSGL----IDQIRENDKVEYGVERGK 53 Query: 61 ANGKYSAENLKLV 73 +A N+K++ Sbjct: 54 KG--MNAVNVKVI 64 >gi|120435933|ref|YP_861619.1| cold shock-like protein [Gramella forsetii KT0803] gi|117578083|emb|CAL66552.1| cold shock-like protein [Gramella forsetii KT0803] Length = 64 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KG+GFI EGS E D+F+H S + + ++ E V ++ Q Sbjct: 1 MQEGKVKFFNNTKGFGFIQAEGSNE---DIFVHSSGL----IDDIREDDRVQFETEQGKK 53 Query: 62 NGKYSAENLKLV 73 +A N++L+ Sbjct: 54 G--LNAINVELI 63 >gi|254703775|ref|ZP_05165603.1| ATP/GTP-binding site motif A, P-loop protein [Brucella suis bv. 3 str. 686] Length = 72 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36 + G++K++N KG+GFI P+ + DVF+H S Sbjct: 1 MANGTVKFFNSTKGFGFIQPD---DGSSDVFVHIS 32 >gi|254693964|ref|ZP_05155792.1| Cold shock-like protein cspG [Brucella abortus bv. 3 str. Tulya] gi|261214256|ref|ZP_05928537.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260915863|gb|EEX82724.1| cold-shock DNA-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 193 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G + Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGE-KGLMA 178 Query: 67 AE 68 AE Sbjct: 179 AE 180 >gi|159898821|ref|YP_001545068.1| cold-shock DNA-binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891860|gb|ABX04940.1| cold-shock DNA-binding domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 197 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++ W++P+K YGFIT T +G +F+HR A+ G L EG+ V++ V+ Sbjct: 6 TGTVAWFDPEKSYGFIT----THAGASLFVHRRAL-GDGRRWLVEGEEVSFVVVRGMKG 59 >gi|260566972|ref|ZP_05837442.1| LOW QUALITY PROTEIN: ATP/GTP-binding site-containing protein A [Brucella suis bv. 4 str. 40] gi|261754421|ref|ZP_05998130.1| LOW QUALITY PROTEIN: cold shock protein cspA [Brucella suis bv. 3 str. 686] gi|260156490|gb|EEW91570.1| LOW QUALITY PROTEIN: ATP/GTP-binding site-containing protein A [Brucella suis bv. 4 str. 40] gi|261744174|gb|EEY32100.1| LOW QUALITY PROTEIN: cold shock protein cspA [Brucella suis bv. 3 str. 686] Length = 69 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36 + G++K++N KG+GFI P+ + DVF+H S Sbjct: 1 MANGTVKFFNSTKGFGFIQPD---DGSSDVFVHIS 32 >gi|121601754|ref|YP_989122.1| cold-shock DNA-binding family protein [Bartonella bacilliformis KC583] gi|120613931|gb|ABM44532.1| cold-shock DNA-binding family protein [Bartonella bacilliformis KC583] Length = 179 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGF+TP+ D+ LH S + G EG V + Sbjct: 15 TGIIKWFDSSKGYGFVTPDFPKL--PDILLHISVMQRDGFQTALEGAKVVCSVKKTKRG 71 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N DKG+GF++ + +D+F+H + GL L GQ+V + + + Sbjct: 105 LERAIVKWFNRDKGFGFLSR---GQGTEDIFIHMETLRRFGLTELRAGQVVIVRFGKGE- 160 Query: 62 NGKYSAE 68 G +AE Sbjct: 161 KGLMTAE 167 >gi|77462899|ref|YP_352403.1| cold-shock DNA-binding protein family protein [Rhodobacter sphaeroides 2.4.1] gi|126461790|ref|YP_001042904.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221638771|ref|YP_002525033.1| Cold-shock DNA-binding protein family [Rhodobacter sphaeroides KD131] gi|332557790|ref|ZP_08412112.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides WS8N] gi|77387317|gb|ABA78502.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides 2.4.1] gi|126103454|gb|ABN76132.1| cold-shock DNA-binding protein family [Rhodobacter sphaeroides ATCC 17029] gi|221159552|gb|ACM00532.1| Cold-shock DNA-binding protein family precursor [Rhodobacter sphaeroides KD131] gi|332275502|gb|EGJ20817.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 180 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KG+GF G E DVF+H + +G +L G+ V ++ Sbjct: 103 LEPGRVKWFDKGKGFGFANVFGRPE---DVFIHVEVLRMSGFADLAAGEAVALRIIEG-R 158 Query: 62 NGKYSAENLK 71 G+ + + + Sbjct: 159 RGRMAVQVVS 168 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GFI E E+G D+ LH + + + G ++ +G +T VQ+ G Sbjct: 13 GRVKWFDPAKGFGFIVTE---ENGADILLHANVLRNYGQSSVADGAGITVK-VQSTQRGV 68 Query: 65 YSAENLKLVPKSS 77 + E +++ P Sbjct: 69 QAVEVIEIEPPEG 81 >gi|85713421|ref|ZP_01044416.1| Cold shock protein [Idiomarina baltica OS145] gi|85692757|gb|EAQ30760.1| Cold shock protein [Idiomarina baltica OS145] Length = 40 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF 44 + G +KW+N KG+GFI E D+F H S + G Sbjct: 1 MATGKVKWFNNSKGFGFIESEDRE---GDIFAHYSTIDMEGYR 40 >gi|332521006|ref|ZP_08397466.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4] gi|332043536|gb|EGI79732.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4] Length = 63 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFIT EG D F+H + + + + EG V +D + Sbjct: 1 MSKGTVKFFNDTKGFGFITEEGVD---KDHFVHVTGI----IDEIREGDDVEFDLQEGKK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|289178440|gb|ADC85686.1| Cold shock protein [Bifidobacterium animalis subsp. lactis BB-12] Length = 168 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G I+W++ KGYGFI + G DVFL ++A+ G+ N +G V Y ++ + Sbjct: 40 MPSGRIRWFDAKKGYGFIAGD----DGKDVFLPQTAL-PQGVRNPRKGAKVEYSVIEGNR 94 Query: 62 N 62 Sbjct: 95 G 95 >gi|300781744|ref|ZP_07091598.1| cold-shock domain family protein [Corynebacterium genitalium ATCC 33030] gi|300533451|gb|EFK54512.1| cold-shock domain family protein [Corynebacterium genitalium ATCC 33030] Length = 127 Score = 64.6 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ +KG+GF+ S +DV++ ++ V G+ +L GQ + +D+ Sbjct: 1 MPVGKVKWFDAEKGFGFV----SNPGDEDVYVGKN-VLPDGVEDLHPGQRIEFDFAAGRR 55 Query: 62 NGKYSAENLKLV 73 A +KL+ Sbjct: 56 G--PQALRVKLL 65 >gi|222148686|ref|YP_002549643.1| cold shock protein [Agrobacterium vitis S4] gi|221735672|gb|ACM36635.1| cold shock protein [Agrobacterium vitis S4] Length = 192 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 8/64 (12%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64 +KW+N KG+GF+T E +D+F+H + GL L GQ V V+ N G Sbjct: 122 VKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGLTELRPGQTV---LVRFGNGDKGL 175 Query: 65 YSAE 68 +AE Sbjct: 176 MAAE 179 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G +KW++ KG+GFI P+ DV LH + + G + EG + Sbjct: 27 TGVVKWFDVAKGFGFIVPD---NGMQDVLLHVTCLRRDGYQTILEGTRI 72 >gi|148559681|ref|YP_001259182.1| cold-shock family protein [Brucella ovis ATCC 25840] gi|225627734|ref|ZP_03785771.1| Cold shock-like protein cspG [Brucella ceti str. Cudo] gi|254710329|ref|ZP_05172140.1| cold-shock family protein [Brucella pinnipedialis B2/94] gi|254714325|ref|ZP_05176136.1| cold-shock family protein [Brucella ceti M644/93/1] gi|254717224|ref|ZP_05179035.1| cold-shock family protein [Brucella ceti M13/05/1] gi|254719316|ref|ZP_05181127.1| cold-shock family protein [Brucella sp. 83/13] gi|256031823|ref|ZP_05445437.1| cold-shock family protein [Brucella pinnipedialis M292/94/1] gi|256160002|ref|ZP_05457711.1| cold-shock family protein [Brucella ceti M490/95/1] gi|256255223|ref|ZP_05460759.1| cold-shock family protein [Brucella ceti B1/94] gi|256369687|ref|YP_003107197.1| cold-shock family protein [Brucella microti CCM 4915] gi|260168957|ref|ZP_05755768.1| cold-shock family protein [Brucella sp. F5/99] gi|261219042|ref|ZP_05933323.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M13/05/1] gi|261222420|ref|ZP_05936701.1| cold-shock DNA-binding domain-containing protein [Brucella ceti B1/94] gi|261317893|ref|ZP_05957090.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261322102|ref|ZP_05961299.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M644/93/1] gi|261758450|ref|ZP_06002159.1| cold-shock DNA-binding domain-containing protein [Brucella sp. F5/99] gi|265984317|ref|ZP_06097052.1| cold-shock DNA-binding domain-containing protein [Brucella sp. 83/13] gi|265988922|ref|ZP_06101479.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265998387|ref|ZP_06110944.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M490/95/1] gi|294852602|ref|ZP_06793275.1| cold shock protein [Brucella sp. NVSL 07-0026] gi|306839091|ref|ZP_07471908.1| cold-shock family protein [Brucella sp. NF 2653] gi|306840269|ref|ZP_07473043.1| cold-shock family protein [Brucella sp. BO2] gi|306844169|ref|ZP_07476762.1| cold-shock family protein [Brucella sp. BO1] gi|148370938|gb|ABQ60917.1| cold-shock family protein [Brucella ovis ATCC 25840] gi|225617739|gb|EEH14784.1| Cold shock-like protein cspG [Brucella ceti str. Cudo] gi|255999849|gb|ACU48248.1| cold-shock family protein [Brucella microti CCM 4915] gi|260921004|gb|EEX87657.1| cold-shock DNA-binding domain-containing protein [Brucella ceti B1/94] gi|260924131|gb|EEX90699.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M13/05/1] gi|261294792|gb|EEX98288.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M644/93/1] gi|261297116|gb|EEY00613.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261738434|gb|EEY26430.1| cold-shock DNA-binding domain-containing protein [Brucella sp. F5/99] gi|262552855|gb|EEZ08845.1| cold-shock DNA-binding domain-containing protein [Brucella ceti M490/95/1] gi|264661119|gb|EEZ31380.1| cold-shock DNA-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|264662909|gb|EEZ33170.1| cold-shock DNA-binding domain-containing protein [Brucella sp. 83/13] gi|294821191|gb|EFG38190.1| cold shock protein [Brucella sp. NVSL 07-0026] gi|306275444|gb|EFM57181.1| cold-shock family protein [Brucella sp. BO1] gi|306289796|gb|EFM60978.1| cold-shock family protein [Brucella sp. BO2] gi|306405638|gb|EFM61900.1| cold-shock family protein [Brucella sp. NF 2653] Length = 193 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G + Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGE-KGLMA 178 Query: 67 AE 68 AE Sbjct: 179 AE 180 >gi|330862902|emb|CBX73039.1| cold shock-like protein cspE [Yersinia enterocolitica W22703] Length = 50 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 3/51 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 + G +KW+N +GYGFI+P + DV++ ++A+A+ +L+EGQ V Sbjct: 3 LKMGRVKWFNQSEGYGFISPH---DGSLDVYVSKTAIANTKNKSLSEGQDV 50 >gi|294635685|ref|ZP_06714157.1| conserved domain protein [Edwardsiella tarda ATCC 23685] gi|291090966|gb|EFE23527.1| conserved domain protein [Edwardsiella tarda ATCC 23685] Length = 50 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 23 GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 + DVF+H SA+ S L EGQ V + V+N G + + + Sbjct: 1 SPADGSKDVFVHFSAIQSNEFRTLDEGQKVEFS-VENSPKGPSAVNVVAI 49 >gi|300022575|ref|YP_003755186.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524396|gb|ADJ22865.1| cold-shock DNA-binding domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 199 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KG+GFI P+ D+ LH + + + G EG V + ++ Sbjct: 35 GMIKWFDASKGFGFIVPD---NGLPDILLHVTCLRAGGFQTAYEGARVHCEVLRRSKG 89 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN-DA 61 R +KW+N +G+GF+T E D+F H + G L GQ+V + Sbjct: 124 ERAYVKWFNRVRGFGFLTR---GEGTPDIFCHMETLRRFGFTELRPGQIVQ--VRWGYGS 178 Query: 62 NGKYSAE 68 G +AE Sbjct: 179 KGCMAAE 185 >gi|254702002|ref|ZP_05163830.1| cold-shock family protein [Brucella suis bv. 5 str. 513] gi|261752569|ref|ZP_05996278.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261742322|gb|EEY30248.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 5 str. 513] Length = 193 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G + Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGE-KGLMA 178 Query: 67 AE 68 AE Sbjct: 179 AE 180 >gi|319783223|ref|YP_004142699.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169111|gb|ADV12649.1| Cold-shock protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 198 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + D Sbjct: 124 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRYGVTELRPGQVVLVRFGRGD- 179 Query: 62 NGKYSAE 68 G +AE Sbjct: 180 KGLMAAE 186 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IKW++ KGYGFI P+ D+ LH + + G EG V V++ G Sbjct: 34 GAIKWFDVAKGYGFILPDDGISG--DILLHVTCLRRDGFQTALEGARVVC-LVKHGERGL 90 Query: 65 YSAENLKL 72 + L + Sbjct: 91 QAFRVLSM 98 >gi|146300393|ref|YP_001194984.1| cold-shock DNA-binding domain-containing protein [Flavobacterium johnsoniae UW101] gi|146154811|gb|ABQ05665.1| cold-shock DNA-binding protein family [Flavobacterium johnsoniae UW101] Length = 63 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N +KG+GFITP G +VF+H S ++ ++ + V YD + Sbjct: 1 MQEGTVKFFNEEKGFGFITP---NNGGAEVFVHASGLS----ESIRQDDAVRYDIEEGRK 53 Query: 62 NGKYSAENLKL 72 +A N+ + Sbjct: 54 G--PNAVNVVV 62 >gi|153009253|ref|YP_001370468.1| cold-shock DNA-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561141|gb|ABS14639.1| putative cold-shock DNA-binding domain protein [Ochrobactrum anthropi ATCC 49188] Length = 193 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ +D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLNDILLHVTSLRRDGFQTALEGARIVCEVRNGDRG 83 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + D G + Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGEGD-KGLMA 178 Query: 67 AE 68 AE Sbjct: 179 AE 180 >gi|148681705|gb|EDL13652.1| mCG50433 [Mus musculus] Length = 305 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G+++W N GY FI ++ +DVF+H++A+ L ++ +G+ V +D V+ + Sbjct: 60 GTVRWINVRNGYSFI---NRNDTKEDVFVHQTAIRKNNPRKYLRSVGDGETVEFDVVEGE 116 Query: 61 ANGKYSAEN 69 G +A+ Sbjct: 117 -KGAEAAKV 124 >gi|183601800|ref|ZP_02963170.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019] gi|219683669|ref|YP_002470052.1| cold shock protein [Bifidobacterium animalis subsp. lactis AD011] gi|183219406|gb|EDT90047.1| cold shock protein [Bifidobacterium animalis subsp. lactis HN019] gi|219621319|gb|ACL29476.1| cold shock protein [Bifidobacterium animalis subsp. lactis AD011] Length = 129 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G I+W++ KGYGFI + G DVFL ++A+ G+ N +G V Y ++ + Sbjct: 1 MPSGRIRWFDAKKGYGFIAGD----DGKDVFLPQTAL-PQGVRNPRKGAKVEYSVIEGNR 55 Query: 62 N 62 Sbjct: 56 G 56 >gi|157126269|ref|XP_001654567.1| hypothetical protein AaeL_AAEL002060 [Aedes aegypti] gi|108882539|gb|EAT46764.1| hypothetical protein AaeL_AAEL002060 [Aedes aegypti] Length = 192 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 7/65 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV---ASAGL-FNLTEGQLVTYDYVQN 59 G++KW+N G+GFIT ++G+D+F+H+S + ++ +G++V + + + Sbjct: 35 TGTVKWFNAKDGFGFITRH---DTGEDIFVHKSCIFKPNRNHFTKSIGDGEIVEFGLIAS 91 Query: 60 DANGK 64 G Sbjct: 92 KVTGP 96 >gi|302383024|ref|YP_003818847.1| cold-shock DNA-binding domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302193652|gb|ADL01224.1| cold-shock DNA-binding domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 186 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 5 GSIKWYNPDKGYGFITPEG-STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW++P KGYGFI P+ D+ LH S++ +G EG + D + Sbjct: 17 GRVKWFDPGKGYGFIVPDDPGQTDHKDILLHISSLRDSGRDLAGEGATIECDCARRAKG 75 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 ++KW+N KGYGF+ E D+F+H + GL +L G+ V + G Sbjct: 123 TVKWFNRTKGYGFVVRETDP---GDIFVHIETLRRCGLDDLVPGETVAVRFA-TGPKGLV 178 Query: 66 SAE 68 AE Sbjct: 179 VAE 181 >gi|126735666|ref|ZP_01751411.1| cold shock DNA-binding domain protein [Roseobacter sp. CCS2] gi|126714853|gb|EBA11719.1| cold shock DNA-binding domain protein [Roseobacter sp. CCS2] Length = 190 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GF+ E E G D+ LH + + + G ++ +G ++ VQ+ G Sbjct: 29 GQVKWFDPTKGFGFVVSE---EGGPDILLHANVLRNYGQGSVVDGSAISI-MVQDTQRGL 84 Query: 65 YSAENLKLVPKSSN 78 + E L + P + Sbjct: 85 QATEVLSITPPETE 98 Score = 57.3 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G+ E DVF+H + +GL +L G+ + V + G+ Sbjct: 123 RVKWFDKAKGFGFANVFGNNE---DVFVHVEVLRRSGLSDLQSGEAIGIRMV-DGERGRM 178 Query: 66 SAENL 70 + E + Sbjct: 179 AIEVI 183 >gi|270291449|ref|ZP_06197671.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus acidilactici 7_4] gi|270280295|gb|EFA26131.1| cold shock protein (beta-ribbon, CspA family) [Pediococcus acidilactici 7_4] Length = 70 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++ KGYGFI ++G+ F+H SAV S L E ++V + Sbjct: 1 METGTVTSFDKTKGYGFIE----LDNGEKAFVHYSAVQSDDFKTLDENEVVQLMVAEGPK 56 Query: 62 N 62 Sbjct: 57 G 57 >gi|304393756|ref|ZP_07375684.1| cold shock protein [Ahrensia sp. R2A130] gi|303294763|gb|EFL89135.1| cold shock protein [Ahrensia sp. R2A130] Length = 216 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IKW++ KG+GF+ P+ + DV LH S + G EG + + V+ A G Sbjct: 52 GAIKWFDVSKGFGFVVPD---DDMPDVLLHVSCLRDDGFQTAHEGARIVCEVVR-KARGL 107 Query: 65 YSAENLKL 72 + L + Sbjct: 108 QAFRVLSM 115 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T E +D+F+H + GL L GQ V Y D G + Sbjct: 146 VKWFNRTKGFGFLTQ---GEGTEDIFIHMETLRRFGLTELRPGQHVMVRYGHGD-KGLMA 201 Query: 67 AEN 69 AE Sbjct: 202 AEV 204 >gi|148645028|gb|ABR01044.1| Csp [uncultured Geobacter sp.] Length = 48 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%) Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 FI + +G+DVF+H SA+ G +L EG VT++ V+ G +A Sbjct: 1 FIEQD----NGEDVFVHFSAIQGEGFKSLAEGDTVTFEVVKG-PKGLQAANV 47 >gi|17987014|ref|NP_539648.1| cold shock protein [Brucella melitensis bv. 1 str. 16M] gi|225852761|ref|YP_002732994.1| cold shock-like protein CspG [Brucella melitensis ATCC 23457] gi|256044907|ref|ZP_05447811.1| Cold shock-like protein cspG [Brucella melitensis bv. 1 str. Rev.1] gi|256113823|ref|ZP_05454616.1| Cold shock-like protein cspG [Brucella melitensis bv. 3 str. Ether] gi|256263754|ref|ZP_05466286.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260565491|ref|ZP_05835975.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|265991335|ref|ZP_06103892.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995172|ref|ZP_06107729.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|17982667|gb|AAL51912.1| cold shock protein [Brucella melitensis bv. 1 str. 16M] gi|225641126|gb|ACO01040.1| Cold shock-like protein cspG [Brucella melitensis ATCC 23457] gi|260151559|gb|EEW86653.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|262766285|gb|EEZ12074.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263002119|gb|EEZ14694.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093812|gb|EEZ17817.1| cold-shock DNA-binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|326409287|gb|ADZ66352.1| cold shock-like protein CspG [Brucella melitensis M28] gi|326538998|gb|ADZ87213.1| cold shock-like protein cspG [Brucella melitensis M5-90] Length = 193 Score = 64.6 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH +++ G EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 83 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G + Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGE-KGLMA 178 Query: 67 AE 68 AE Sbjct: 179 AE 180 >gi|227356797|ref|ZP_03841182.1| cold shock protein Csp [Proteus mirabilis ATCC 29906] gi|227163087|gb|EEI48022.1| cold shock protein Csp [Proteus mirabilis ATCC 29906] Length = 88 Score = 64.2 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ +KGYG I + + D+++++ A+A+ LTEGQ V + ++ A Sbjct: 22 LRMGRVKWFDNNKGYGLIV---AKDLEQDIYVNKKAIANTKNKALTEGQDVEFSVIKT-A 77 Query: 62 NGKYSAENL 70 G +A+ + Sbjct: 78 AGLEAADVI 86 >gi|255531633|ref|YP_003092005.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366] gi|255344617|gb|ACU03943.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366] Length = 63 Score = 64.2 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 8/71 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI P + ++F+H SA+++ + E V+Y+ V+N Sbjct: 1 MPEGTVKFFNESKGFGFIIP---SNGDPELFVHASALSAP----VRENDRVSYE-VENGK 52 Query: 62 NGKYSAENLKL 72 G + + K+ Sbjct: 53 KGLNATKVKKI 63 >gi|83814564|ref|YP_446548.1| hypothetical protein SRU_2449 [Salinibacter ruber DSM 13855] gi|294508486|ref|YP_003572544.1| Cold shock-like protein cspC [Salinibacter ruber M8] gi|83755958|gb|ABC44071.1| conserved domain protein [Salinibacter ruber DSM 13855] gi|294344814|emb|CBH25592.1| Cold shock-like protein cspC [Salinibacter ruber M8] Length = 75 Score = 64.2 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 10/79 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN---LTEGQLVTYDYVQ 58 + +G +K+++ +G+GFI P + +DVFLH + + +G+ + L EGQ + Y+ Q Sbjct: 1 MEKGKLKFFDTSRGFGFIEP---LDGSEDVFLHANNI--SGMTSGEDLREGQTIEYETEQ 55 Query: 59 NDANGKYSAENLKLVPKSS 77 + SA N ++S Sbjct: 56 TEKG--LSALNAAPADETS 72 >gi|86130406|ref|ZP_01049006.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] gi|85819081|gb|EAQ40240.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] Length = 82 Score = 64.2 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G +K++N KG+GFI + S E VF+H + V L E VT++ + Sbjct: 17 IRKEGKVKFFNTKKGFGFIAIDNSDEE---VFVHTTNVTG----RLRENDKVTFEVEDGE 69 Query: 61 ANGKYSAENLKLVPK 75 SA N+K V K Sbjct: 70 KG--PSAVNVKRVKK 82 >gi|255037756|ref|YP_003088377.1| cold-shock DNA-binding domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254950512|gb|ACT95212.1| cold-shock DNA-binding domain protein [Dyadobacter fermentans DSM 18053] Length = 64 Score = 64.2 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KGYGFI + ++ D+F+H + + G + E V Y+ V+ Sbjct: 1 MPTGTVKFFNEAKGYGFIVED---DTKKDIFVHVTGL---GGLTIRENDQVEYEVVEGKK 54 Query: 62 NGKYSAENLKLV 73 +A +K + Sbjct: 55 G--LNAVQVKKI 64 >gi|332638444|ref|ZP_08417307.1| Cold-shock protein [Weissella cibaria KACC 11862] Length = 73 Score = 64.2 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K +N D G+GFI + +DVF+H SA+ + + +L G+ V VQ Sbjct: 5 EGYVKTWNADNGFGFIE----LKGEEDVFVHFSAIETPRVRDLEVGEPVKLVVVQGVRGP 60 Query: 64 KYSAENLKLVPKS 76 + +A +K+ ++ Sbjct: 61 QAAAVEVKVTGEA 73 >gi|61680881|pdb|2BH8|A Chain A, Combinatorial Protein 1b11 gi|61680882|pdb|2BH8|B Chain B, Combinatorial Protein 1b11 Length = 101 Score = 64.2 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 3/34 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37 G +KW+N DKG+GFITP+ + DVF+H SA Sbjct: 18 TGIVKWFNADKGFGFITPD---DGSKDVFVHFSA 48 >gi|296118317|ref|ZP_06836898.1| cold-shock domain protein [Corynebacterium ammoniagenes DSM 20306] gi|295968875|gb|EFG82119.1| cold-shock domain protein [Corynebacterium ammoniagenes DSM 20306] Length = 127 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ +KG+GF+ S +DV++ R+ V G+ L +GQ + +D+ Sbjct: 1 MPIGKVKWFDAEKGFGFV----SNPGDEDVYVGRN-VLPEGVEELVQGQRIEFDFAAGRR 55 Query: 62 NGKYSAENLKLVP 74 A +K++ Sbjct: 56 G--PQALRVKILE 66 >gi|110634084|ref|YP_674292.1| cold-shock DNA-binding protein family protein [Mesorhizobium sp. BNC1] gi|110285068|gb|ABG63127.1| cold-shock DNA-binding protein family [Chelativorans sp. BNC1] Length = 197 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + D Sbjct: 123 LERALVKWFNRTKGFGFLTR---GEGTEDIFVHMETLRRFGVTELRPGQVVLVRFGRGD- 178 Query: 62 NGKYSAE 68 G +AE Sbjct: 179 KGLMAAE 185 Score = 60.3 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+IKW++ KG+GFI P+ + DV LH S + G G V + G Sbjct: 33 GAIKWFDVAKGFGFILPDIAEFG--DVLLHVSCLRRDGFQTALSGARVVC-LAKRGDKGM 89 Query: 65 YSAENLKLVPKSS 77 + + + ++ Sbjct: 90 QAFRVVSMDMSTA 102 >gi|302549706|ref|ZP_07302048.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302467324|gb|EFL30417.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 164 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G + ++ KGYGFI P+ G+DVF+H + +A G LT G V +D + Sbjct: 1 MAQGVVVRFDDVKGYGFIAPD---NGGEDVFVHVNDLAEPG-TTLTSGTRVVFDVLDGGR 56 Query: 62 NGKYSAENLKLVPKSS 77 A ++ L + Sbjct: 57 G--LKAYDVSLAGPAQ 70 >gi|167646972|ref|YP_001684635.1| cold-shock DNA-binding domain-containing protein [Caulobacter sp. K31] gi|167349402|gb|ABZ72137.1| cold-shock DNA-binding domain protein [Caulobacter sp. K31] Length = 201 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KGYGFI P+ ++G DV LH +++ + G EG ++ D V+ G Sbjct: 20 GRVKWFDTGKGYGFIVPDDPGQTGLKDVLLHVTSLRNCGRETALEGAVIVCDVVKR-PKG 78 Query: 64 KYSAENLKLVPKSSN 78 +E + L +++ Sbjct: 79 WQVSEVVDLDESAAS 93 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 R +KW+N KGYGF+ +G D+F+H + GL +L G V + + Sbjct: 133 AERAKVKWFNRTKGYGFVVRDGQP---GDIFVHIETLRRGGLEDLQPGDDVMVRFAEG-P 188 Query: 62 NGKYSAE 68 G AE Sbjct: 189 KGLVVAE 195 >gi|126737875|ref|ZP_01753605.1| cold shock DNA-binding domain protein [Roseobacter sp. SK209-2-6] gi|126721268|gb|EBA17972.1| cold shock DNA-binding domain protein [Roseobacter sp. SK209-2-6] Length = 178 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KGYGF+ + G D+ LH + + + G ++ +G + N G Sbjct: 12 QGLVKWFDPAKGYGFVVSDS---GGPDILLHVNVLRNFGQSSVADGTRIEV-VTHNTDRG 67 Query: 64 KYSAENLKLVPKSSN 78 + E L ++P + Sbjct: 68 VQAVEILSILPPERD 82 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW+N KG+GF G DVFLH + +GL +L G+ + + + G+ Sbjct: 107 RVKWFNKGKGFGFANVFGRD---ADVFLHVEVLRQSGLADLQPGEALAMRVI-DGKRGQM 162 Query: 66 SAEN 69 +AE Sbjct: 163 AAEV 166 >gi|323451383|gb|EGB07260.1| hypothetical protein AURANDRAFT_64934 [Aureococcus anophagefferens] Length = 1057 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 14/77 (18%) Query: 1 MVHR----GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 M+H G++ W+ K +GFI P+ + G+D+F+H S + +G V YD Sbjct: 570 MMHMTSCAGTVLWF--SKSHGFIKPD---DGGEDIFVHGSDIFQ---KYANDGDRVLYDV 621 Query: 57 VQNDANGKYSAENLKLV 73 G+ A +++V Sbjct: 622 --GTLKGRPKAVAVEIV 636 Score = 41.9 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGS---TESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQ 58 +RG KW+N +GFITP S DVF + +A ++T G V Y Sbjct: 675 YRGVCKWFNSKNMHGFITPSESHALDPGETDVFCYAEDLAPGTTHADMTTGDPVEYGLGT 734 Query: 59 NDANGKYSAENL 70 +G+ A ++ Sbjct: 735 T-KSGRVKAVDV 745 >gi|330503459|ref|YP_004380328.1| hypothetical protein MDS_2545 [Pseudomonas mendocina NK-01] gi|328917745|gb|AEB58576.1| hypothetical protein MDS_2545 [Pseudomonas mendocina NK-01] Length = 240 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K ++ KG+GFI PE G DVF H S + G V + D G Sbjct: 7 KGRLKSWDDAKGFGFIQPE---NGGADVFAHISVMRGD--RRPQPGDDVLF-IEGRDQRG 60 Query: 64 KYSAENLKL 72 + AE+L+L Sbjct: 61 RPRAEHLRL 69 >gi|170783067|ref|YP_001711401.1| putative cold shock protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157637|emb|CAQ02835.1| putative cold shock protein [Clavibacter michiganensis subsp. sepedonicus] Length = 127 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K+Y+ DKG+GFI S++ G +VFLH SA+ +G+ + G + + A Sbjct: 1 MPTGKVKFYDEDKGFGFI----SSDDGQEVFLHASAL-PSGVAGVKAGTRLEFGI----A 51 Query: 62 NGKYSAENLK 71 +GK A+ L Sbjct: 52 DGKRGAQALS 61 >gi|125526345|gb|EAY74459.1| hypothetical protein OsI_02348 [Oryza sativa Indica Group] Length = 98 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K ++ G+ FITP+ + +D+F+H+S++ G +L + ++ D +G Sbjct: 7 KGMVKGFDATNGFSFITPD---DGSEDLFIHQSSLKFDGYRSLNDDDVIELSVGSGD-DG 62 Query: 64 KYSAENLK 71 + A ++ Sbjct: 63 RTKAVDVT 70 >gi|259503042|ref|ZP_05745944.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259168908|gb|EEW53403.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 67 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K ++ KG+GFIT E +F+H S + L G V+ VQ Sbjct: 1 MLEGKVKSFDEQKGWGFITVPQEGE----IFVHYSGIEGQHRRVLHPGDRVSLVVVQG-K 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGPQAAHV 63 >gi|260577276|ref|ZP_05845250.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] gi|259020520|gb|EEW23842.1| cold-shock DNA-binding domain protein [Rhodobacter sp. SW2] Length = 177 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GFI + E G D+ LH + + + G ++ +G ++ + VQ G+ Sbjct: 13 GHVKWFDPTKGFGFIVAD---EGGPDILLHANVLRNYGQSSVADGTAISVN-VQATQRGR 68 Query: 65 YSAENLKLVPK 75 + E L++ P Sbjct: 69 QAVEVLEIEPP 79 Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G E DVF+H + +G +L G+ V + + G+ Sbjct: 107 RVKWFDKGKGFGFANVFGRPE---DVFVHVEVLRLSGFADLAAGEAVGLRIL-DGKRGRM 162 Query: 66 SAENLK 71 + + + Sbjct: 163 AVQVVS 168 >gi|301170784|dbj|BAJ12006.1| y box protein [Samia cynthia walkeri] Length = 139 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ + ++ +G+ V + V + Sbjct: 15 GTVKWFNVKSGYGFI---NRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGE 71 Query: 61 ANGKYSAEN 69 G +A Sbjct: 72 -KGYEAARV 79 >gi|227504265|ref|ZP_03934314.1| cold shock protein [Corynebacterium striatum ATCC 6940] gi|227199152|gb|EEI79200.1| cold shock protein [Corynebacterium striatum ATCC 6940] Length = 126 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ DKG+GF+ S +DV++ R+ V G+ L +GQ + +D+ Sbjct: 1 MPIGKVKWFDADKGFGFV----SNPGDEDVYVGRN-VLPEGVDELVQGQRIEFDFAAGRR 55 Query: 62 NGKYSAENLKLV 73 A +K++ Sbjct: 56 G--PQALRVKVL 65 >gi|112982792|ref|NP_001036897.1| Y-box protein [Bombyx mori] gi|49532669|dbj|BAD26606.1| Y-box protein [Bombyx mori] Length = 259 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 7/62 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+A + ++ +G+ V + V + Sbjct: 40 GTVKWFNVKSGYGFI---NRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96 Query: 61 AN 62 Sbjct: 97 KG 98 >gi|148273654|ref|YP_001223215.1| putative cold shock protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831584|emb|CAN02552.1| putative cold shock protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 127 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K+Y+ DKG+GFI S++ G +VFLH SA+ +G+ + G + + A Sbjct: 1 MPTGKVKFYDEDKGFGFI----SSDDGQEVFLHASAL-PSGVAGVKAGTRLEFGI----A 51 Query: 62 NGKYSAENLK 71 +GK A+ L Sbjct: 52 DGKRGAQALS 61 >gi|330508303|ref|YP_004384731.1| cold shock DNA binding domain-containing protein [Methanosaeta concilii GP-6] gi|328929111|gb|AEB68913.1| cold shock DNA binding domain protein [Methanosaeta concilii GP-6] Length = 64 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N K +GFI + G D F+H + + +TEG V+++ V+ + Sbjct: 1 MVSGTVKFFNRTKRFGFIAGD----DGKDYFVHATGLMPD--VTITEGDKVSFEVVEGEK 54 Query: 62 NGK 64 K Sbjct: 55 GPK 57 >gi|241190702|ref|YP_002968096.1| cold shock protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196108|ref|YP_002969663.1| cold shock protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|240249094|gb|ACS46034.1| cold shock protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250662|gb|ACS47601.1| cold shock protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793691|gb|ADG33226.1| cold shock protein [Bifidobacterium animalis subsp. lactis V9] Length = 147 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G I+W++ KGYGFI + G DVFL ++A+ G+ N +G V Y ++ + Sbjct: 19 MPSGRIRWFDAKKGYGFIAGD----DGKDVFLPQTAL-PQGVRNPRKGAKVEYSVIEGNR 73 Query: 62 N 62 Sbjct: 74 G 74 >gi|163753583|ref|ZP_02160706.1| cold shock protein, DNA-binding [Kordia algicida OT-1] gi|161325797|gb|EDP97123.1| cold shock protein, DNA-binding [Kordia algicida OT-1] Length = 64 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++K++N DKG+GFIT + ++G D+F+H S + L V+Y+ + Sbjct: 2 TGTVKFFNEDKGFGFITND---DTGKDIFVHVSNLNGL---VLNSDDRVSYEEEEGRKG- 54 Query: 64 KYSAENLKLVP 74 A ++++ Sbjct: 55 -MVATQVQIIE 64 >gi|149278086|ref|ZP_01884225.1| cold shock protein [Pedobacter sp. BAL39] gi|149231284|gb|EDM36664.1| cold shock protein [Pedobacter sp. BAL39] Length = 63 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KG+GFI P +F+H + + + + E VTYD + Sbjct: 1 MQEGVVKFFNETKGFGFIIPNSGESE---IFVHSTGLLAD----IRENDKVTYDVEEGRK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|83594791|ref|YP_428543.1| cold-shock DNA-binding protein family protein [Rhodospirillum rubrum ATCC 11170] gi|83577705|gb|ABC24256.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC 11170] Length = 210 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++KW+N KG+GF+ ++ D FLH S + AG L EG + D Sbjct: 6 TATVKWFNATKGFGFV---RVSDGEPDAFLHISVLQRAGYSELPEGATIVCDLAPGQKG 61 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K+++ DKG+GF+ P+G G DV++ + G+ L +GQ V + G Sbjct: 147 GVVKFFSADKGFGFVVPDG---GGKDVYVGSRTLQDCGVSVLEQGQRVRMSI-RMGKKGP 202 Query: 65 YS 66 + Sbjct: 203 MA 204 >gi|84515605|ref|ZP_01002967.1| cold shock DNA-binding domain protein [Loktanella vestfoldensis SKA53] gi|84510888|gb|EAQ07343.1| cold shock DNA-binding domain protein [Loktanella vestfoldensis SKA53] Length = 175 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KG+GF+ E G D+ LH + + + G ++ +G + VQ+ G Sbjct: 13 QGQVKWFDPTKGFGFVIAEL---GGPDILLHANVLRNFGQGSVVDGSRIDL-MVQDTQRG 68 Query: 64 KYSAENLKLVPKSSN 78 + E + + P ++ Sbjct: 69 LQAVEVISITPPHAD 83 Score = 57.3 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF GS++ DVF+H + +GL +L G+ + V + G+ Sbjct: 108 RVKWFDKAKGFGFANVFGSSD---DVFIHIEVLRRSGLSDLQSGEAIGLRLV-DGERGRM 163 Query: 66 SAENL 70 + + + Sbjct: 164 AIDIV 168 >gi|329850706|ref|ZP_08265551.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] gi|328841021|gb|EGF90592.1| Cold-shock DNA-binding domain protein [Asticcacaulis biprosthecum C19] Length = 187 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 5 GSIKWYNPDKGYGFITP-EGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW++ KGYGFI P + + S DV LH S++ G + EG +T + Sbjct: 20 GHVKWFDAAKGYGFIVPQDATLTSTRDVLLHISSLRDLGRDSAHEGAKITCKIAKRSKG 78 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +IKW+N KGYGF+ D+F+H + GL ++ +G + + + Sbjct: 118 LEAATIKWFNRTKGYGFVVR---GNDPTDIFIHIETLRRYGLEDVQQGDTIMVRFGEGPK 174 Query: 62 N 62 Sbjct: 175 G 175 >gi|38233375|ref|NP_939142.1| cold shock protein B [Corynebacterium diphtheriae NCTC 13129] gi|38199635|emb|CAE49294.1| cold shock protein B [Corynebacterium diphtheriae] Length = 129 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G + WY+ DKG+GF+ S GDD F+ V G+ L +GQ V +DYV Sbjct: 1 MPQGKVLWYDVDKGFGFV----SNPEGDDCFV-SKDVLPQGVQKLEKGQRVEFDYVARGR 55 Query: 62 NGKYSAENLKLV 73 A +K++ Sbjct: 56 G--PQALRIKVL 65 >gi|323454256|gb|EGB10126.1| hypothetical protein AURANDRAFT_62693 [Aureococcus anophagefferens] Length = 137 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 8/75 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 H G ++WY K YGFI +G++ + D+F+H S + L G V++ V + Sbjct: 38 RHTGVVRWYTEKKHYGFIESKGASAT--DLFVHSSELEEP----LRAGDTVSF--VIGER 89 Query: 62 NGKYSAENLKLVPKS 76 G+ +A +++V ++ Sbjct: 90 RGRSAATKVEVVERA 104 >gi|309774677|ref|ZP_07669701.1| cold-shock domain family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917577|gb|EFP63293.1| cold-shock domain family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 86 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+ W++ +KGYGF+ + S +H + + G L GQ VTY+ ++ + Sbjct: 12 GTCIWFSDEKGYGFLLSDDGVSSM----VHYTDIKEPGFKRLYRGQRVTYEELETERG-- 65 Query: 65 YSAENLK 71 SA +K Sbjct: 66 RSARRVK 72 >gi|161522615|ref|YP_001585544.1| cold-shock DNA-binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|160346168|gb|ABX19252.1| cold-shock DNA-binding domain protein [Burkholderia multivorans ATCC 17616] Length = 193 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW++ DKG+GFI E + D F H S V A EG +V +D ++ G Sbjct: 2 RGTVKWFSKDKGHGFIYGESAV----DYFFHVSDVVGA--DAPREGDIVEFDAT-SNKRG 54 Query: 64 KYSAENLKLVPKS 76 +A +++V + Sbjct: 55 PRAAT-VRIVERQ 66 >gi|322368663|ref|ZP_08043230.1| cold shock protein [Haladaptatus paucihalophilus DX253] gi|320551394|gb|EFW93041.1| cold shock protein [Haladaptatus paucihalophilus DX253] Length = 64 Score = 63.8 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI + + + DVF H V G +L EGQ V +D Q D Sbjct: 1 MAKGTVTFFNDTGGYGFIETDDADD---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54 Query: 62 NGKYSAENLKLV 73 + A NL+ + Sbjct: 55 GPR--ATNLQRL 64 >gi|71064869|ref|YP_263596.1| guanine-specific ribonuclease [Psychrobacter arcticus 273-4] gi|71037854|gb|AAZ18162.1| possible guanine-specific ribonuclease with a cold-shock DNA-binding domain [Psychrobacter arcticus 273-4] Length = 247 Score = 63.8 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G IK +N DKGYGFI + +E DVF H +V A ++EGQ V ++ +ND Sbjct: 1 MQSGKIKHWNSDKGYGFIDVDNQSE---DVFFHIKSVQMA--QPISEGQRVYFNSERNDK 55 Query: 62 NGKYSAEN 69 N + E Sbjct: 56 NQLRATEV 63 >gi|149278198|ref|ZP_01884336.1| cold shock protein [Pedobacter sp. BAL39] gi|255529920|ref|YP_003090292.1| DNA-binding cold-shock protein [Pedobacter heparinus DSM 2366] gi|149230964|gb|EDM36345.1| cold shock protein [Pedobacter sp. BAL39] gi|255342904|gb|ACU02230.1| Cold-shock protein DNA-binding [Pedobacter heparinus DSM 2366] Length = 63 Score = 63.8 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI P ++F+H + + + + E V YD V++ Sbjct: 1 MQEGTVKFFNVTKGFGFIIP---ANGDSEIFVHSTGL----IDEIRENDKVEYD-VESGK 52 Query: 62 NGKYSAENLKLV 73 G +A N+K++ Sbjct: 53 KG-LNAINVKVI 63 >gi|332233044|ref|XP_003265713.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein A-like, partial [Nomascus leucogenys] Length = 362 Score = 63.8 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 7/71 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ + ++ V Sbjct: 81 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGENLNFEAVFLF 137 Query: 61 ANGKYSAENLK 71 ++ A N+ Sbjct: 138 SSQGAEAANVT 148 >gi|324518130|gb|ADY47012.1| Y-box-binding protein 2-B [Ascaris suum] Length = 323 Score = 63.8 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 G +KWY+ YGFI + + +DVF+H++A+A + L L +G+ V +D V+ Sbjct: 48 TGKVKWYSVRYHYGFIARDD--DRANDVFVHQTAIAKSRIVKYYLRTLGDGEEVVFDIVE 105 Query: 59 NDANGKYSAEN 69 G +A Sbjct: 106 G-KQGPEAANV 115 >gi|327404541|ref|YP_004345379.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM 16823] gi|327320049|gb|AEA44541.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM 16823] Length = 63 Score = 63.8 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 10/71 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFI E D+F+H + + + E VTYD +N Sbjct: 1 MNKGTVKFFNDAKGFGFIKGENE----QDIFVHATGLNQD----IRENDNVTYD-TENGR 51 Query: 62 NGKYSAENLKL 72 NG +A N+ L Sbjct: 52 NG-LNAVNVSL 61 >gi|308176351|ref|YP_003915757.1| cold shock protein [Arthrobacter arilaitensis Re117] gi|307743814|emb|CBT74786.1| putative cold shock protein [Arthrobacter arilaitensis Re117] Length = 127 Score = 63.8 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY KG+GFIT E G +++++ +A+ G+ +L G + + + Sbjct: 1 MPSGKVKWYEKAKGFGFIT----AEDGKEIYVNAAAL-PEGVHDLRPGTRLEFGVAEGRR 55 Query: 62 NGKYSAENLKLVPKS 76 A +L+L+ ++ Sbjct: 56 G--PQALSLRLLEEA 68 >gi|159044337|ref|YP_001533131.1| putative cold shock protein [Dinoroseobacter shibae DFL 12] gi|157912097|gb|ABV93530.1| putative cold shock protein [Dinoroseobacter shibae DFL 12] Length = 173 Score = 63.8 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ KG+GF+ G+ E D+F+H + G +L G+ V +++ Sbjct: 100 MVPGRVKWFDKVKGFGFLNVFGADE---DIFVHMDVLRRCGFSDLQAGEAVAVRIGESE- 155 Query: 62 NGKYSAENLK 71 G+ + E L Sbjct: 156 RGRLALEVLS 165 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++KW++P KG+GF+ E G D+ LH + + + G ++ +G + VQ G Sbjct: 13 GTVKWFDPKKGFGFVVGEA---DGPDILLHANVLRNFGQSSVADGSQIQIR-VQETPRGI 68 Query: 65 YSAENLKLVPKS 76 + E + + P Sbjct: 69 QAVEVVAITPPE 80 >gi|188582438|ref|YP_001925883.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] gi|179345936|gb|ACB81348.1| cold-shock DNA-binding domain protein [Methylobacterium populi BJ001] Length = 181 Score = 63.4 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KG+GFI P+ + DV LH + + G +EG + + + + G Sbjct: 18 GRIKWFDVSKGFGFIVPD---DGSADVLLHITCLRRDGHQAASEGARIVVEATRRE-RGW 73 Query: 65 YSAENLKL 72 + + L Sbjct: 74 QAFRVVSL 81 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 9/69 (13%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64 +KW+N +G+GF++ + D+F+H + G+ L G+ V V+ + + G Sbjct: 112 VKWFNRLRGFGFLSR---GDGTPDIFVHMETLRRYGIAELKPGEQV---LVRYGDGSKGA 165 Query: 65 YSAENLKLV 73 +AE ++LV Sbjct: 166 MAAE-VRLV 173 >gi|119963261|ref|YP_946802.1| cold shock protein [Arthrobacter aurescens TC1] gi|119950120|gb|ABM09031.1| putative cold shock protein [Arthrobacter aurescens TC1] Length = 127 Score = 63.4 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF+ E G +VFL ++++ AG+ L G V + Sbjct: 1 MPTGKVKWYDKEKGFGFLA----AEDGQEVFLPKTSL-PAGVTELKAGTRVEFGVADGRR 55 Query: 62 NGKYSAENLKLVPKS 76 A L+++ K+ Sbjct: 56 G--AQALGLRVLEKT 68 >gi|268564326|ref|XP_002639074.1| C. briggsae CBR-CEY-2 protein [Caenorhabditis briggsae] Length = 256 Score = 63.4 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KWY+ + YGFI+ + D+F+H++A+A + L L + + + +D V+ Sbjct: 62 QGKVKWYSVLRRYGFISR---NDGEKDIFVHQTAIAKSDTEKFYLRTLADEEDIVFDLVE 118 Query: 59 NDANGKYSAEN 69 NG +A Sbjct: 119 G-KNGPEAANV 128 >gi|159037812|ref|YP_001537065.1| cold-shock DNA-binding domain-containing protein [Salinispora arenicola CNS-205] gi|157916647|gb|ABV98074.1| cold-shock DNA-binding domain protein [Salinispora arenicola CNS-205] Length = 138 Score = 63.4 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G+I ++ +GYGFI P G GDDVF+H + + G V+Y+ VQ++ Sbjct: 1 MEKGTIVRFDDVRGYGFIAPFG---GGDDVFVHANDF-GDQRHAVAAGMRVSYEVVQSER 56 Query: 62 NGKYSAENLKLVPKSS 77 K ++ L+ P S Sbjct: 57 GLKVASVVLESAPASG 72 >gi|313204176|ref|YP_004042833.1| cold-shock DNA-binding protein family [Paludibacter propionicigenes WB4] gi|312443492|gb|ADQ79848.1| cold-shock DNA-binding protein family [Paludibacter propionicigenes WB4] Length = 63 Score = 63.4 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFI+ +GS + F+H S + + + EG V +D + Sbjct: 1 MSKGTVKFFNESKGFGFISEDGSKKEH---FVHISGL----IDQIREGDTVEFDLQEGKK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|242247447|ref|NP_001156041.1| protein lin-28 homolog A [Ovis aries] gi|239736495|gb|ACS12986.1| RNA-binding protein LIN-28 [Ovis aries] Length = 209 Score = 63.4 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+G ++ + DVF+H+S + G +L EG+ V + + ++ Sbjct: 42 GICKWFNVRMGFGSLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|163752832|ref|ZP_02159956.1| cold shock protein [Kordia algicida OT-1] gi|161326564|gb|EDP97889.1| cold shock protein [Kordia algicida OT-1] Length = 63 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG++K++N KG+GFI EGS + F+H S + + + +G V ++ + Sbjct: 1 MSRGTVKFFNDTKGFGFIVEEGSNKEH---FVHISGL----IDEVRQGDEVEFELTEGRK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|269957706|ref|YP_003327495.1| cold-shock DNA-binding domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269306387|gb|ACZ31937.1| cold-shock DNA-binding domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 127 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ ++G+GFI + G +VFLH SA+ N G V Y Sbjct: 1 MPTGKVKWFDSERGFGFIAGD----DGGEVFLHASALPPDA-ANPKPGTRVDYGVADGRR 55 Query: 62 NGKYSAENL 70 A + Sbjct: 56 GPSALAVTV 64 >gi|258510935|ref|YP_003184369.1| cold-shock DNA-binding domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477661|gb|ACV57980.1| cold-shock DNA-binding domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 120 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 12/79 (15%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA------SAGLFNLTEGQLVTYD 55 + G +K + ++G+G+I E G+DV++H SA+ G L +GQLV +D Sbjct: 1 MVEGIVKEWRDEEGFGWI----RAEDGEDVWVHFSAILPHPDRFPRGYRFLRKGQLVEFD 56 Query: 56 YVQNDANG--KYSAENLKL 72 V N + + SA N+ + Sbjct: 57 LVTNPHSAEQRRSARNVVV 75 >gi|17555742|ref|NP_499393.1| Y-box family member (cey-4) [Caenorhabditis elegans] gi|3874932|emb|CAA97783.1| C. elegans protein Y39A1C.3, confirmed by transcript evidence [Caenorhabditis elegans] gi|3880813|emb|CAA19509.1| C. elegans protein Y39A1C.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 294 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 +G +KW++ YGF+ + T+ +D F+H++A+ + L L + + V +D V+ Sbjct: 90 KGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVE 149 Query: 59 NDANGKYSAEN 69 G +A Sbjct: 150 G-LKGPEAANV 159 >gi|321477873|gb|EFX88831.1| hypothetical protein DAPPUDRAFT_311200 [Daphnia pulex] Length = 322 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 G +KW+N GYGFI ++ +D+F+H++A++ + ++ +G++V +D V Sbjct: 25 TGVVKWFNVKSGYGFI---NRNDTKEDIFVHQTAISRNNPRKAVRSVGDGEIVEFDVVVG 81 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 82 E-KGHEAANV 90 >gi|68535487|ref|YP_250192.1| putative cold shock protein [Corynebacterium jeikeium K411] gi|260579770|ref|ZP_05847627.1| cold-shock domain family protein [Corynebacterium jeikeium ATCC 43734] gi|68263086|emb|CAI36574.1| putative cold shock protein [Corynebacterium jeikeium K411] gi|258602122|gb|EEW15442.1| cold-shock domain family protein [Corynebacterium jeikeium ATCC 43734] Length = 127 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ D+GYGF+ S +DV++ S V G+ L +GQ + Y+++ Sbjct: 1 MPTGKVKWYDADRGYGFV----SNPGDEDVYVG-SQVLPDGVTELVKGQRIEYEFIAGRR 55 Query: 62 NGK 64 + Sbjct: 56 GPQ 58 >gi|255263765|ref|ZP_05343107.1| cold shock DNA-binding domain protein [Thalassiobium sp. R2A62] gi|255106100|gb|EET48774.1| cold shock DNA-binding domain protein [Thalassiobium sp. R2A62] Length = 166 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++P KG+GF+ + + G D+ LH + + + G ++ +G + + + G Sbjct: 2 RGLVKWFDPSKGFGFVVAD---DGGPDILLHANVLRNFGQSSVADGSAIELSVI-DTERG 57 Query: 64 KYSAENLKLVPKS 76 +AE + + P Sbjct: 58 IQAAEIITITPPE 70 Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G ++ D+F+H + +GL +L G+ + V + G+ Sbjct: 97 RVKWFDKSKGFGFANVFGVSD---DIFIHVEVLRRSGLADLQYGEAIGVRVV-DGKRGRM 152 Query: 66 SAEN 69 +A+ Sbjct: 153 AAQV 156 >gi|256850939|ref|ZP_05556328.1| cold shock domain-containing protein CspD [Lactobacillus jensenii 27-2-CHN] gi|260661153|ref|ZP_05862067.1| cold shock domain-containing protein CspD [Lactobacillus jensenii 115-3-CHN] gi|282934148|ref|ZP_06339426.1| DNA-binding cold-shock protein [Lactobacillus jensenii 208-1] gi|297205819|ref|ZP_06923214.1| cold shock domain protein CspD [Lactobacillus jensenii JV-V16] gi|256616001|gb|EEU21189.1| cold shock domain-containing protein CspD [Lactobacillus jensenii 27-2-CHN] gi|260548090|gb|EEX24066.1| cold shock domain-containing protein CspD [Lactobacillus jensenii 115-3-CHN] gi|281301762|gb|EFA94028.1| DNA-binding cold-shock protein [Lactobacillus jensenii 208-1] gi|297148945|gb|EFH29243.1| cold shock domain protein CspD [Lactobacillus jensenii JV-V16] Length = 73 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K ++ G+GFI + + S F+ +A+ AG +L GQ V Y Q Sbjct: 1 MRTGTVKQFDSAAGFGFIDDDLTKAS---YFVFYTAIKEAGYKSLEIGQRVRYQLAQGKK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|260433622|ref|ZP_05787593.1| cold shock DNA-binding domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417450|gb|EEX10709.1| cold shock DNA-binding domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 175 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G +E DVFLH + +GL +L G+ + + + G+ Sbjct: 107 RVKWFDKAKGFGFANVFGRSE---DVFLHIEVLRRSGLADLQPGEALAMRVI-DGKRGRM 162 Query: 66 SAENL 70 +A+ L Sbjct: 163 AAQVL 167 Score = 60.7 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++P KGYGF+ + E G D+ LH + + + G ++ +G + G Sbjct: 12 RGHVKWFDPSKGYGFVVSD---EGGPDILLHVNVLRNFGQSSVADGAGIEI-MTHRTDRG 67 Query: 64 KYSAENLKLVPKS 76 + E + + P Sbjct: 68 VQAVEVISIDPPE 80 >gi|227544866|ref|ZP_03974915.1| major cold shock protein [Lactobacillus reuteri CF48-3A] gi|227185140|gb|EEI65211.1| major cold shock protein [Lactobacillus reuteri CF48-3A] Length = 81 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +K ++ KG+GFIT E +F+H S + L + V+ VQ Sbjct: 15 MLKGKVKSFDEQKGWGFITVPHEGE----IFVHYSGIEGTRRRILHPDEEVSLVIVQGQ- 69 Query: 62 NGKYSAEN 69 G +A Sbjct: 70 KGPQAAHV 77 >gi|88803297|ref|ZP_01118823.1| cold shock protein [Polaribacter irgensii 23-P] gi|88780863|gb|EAR12042.1| cold shock protein [Polaribacter irgensii 23-P] Length = 63 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFIT EG+ E F+H S + + E V +D Q+ Sbjct: 1 MNKGTVKFFNESKGFGFITEEGNNEEH---FVHVSGLVDE----IRENDEVEFDL-QDGR 52 Query: 62 NGKYSAENLKLV 73 G +A N++++ Sbjct: 53 KG-LNAVNVRVI 63 >gi|158318882|ref|YP_001511390.1| cold-shock DNA-binding domain-containing protein [Frankia sp. EAN1pec] gi|158114287|gb|ABW16484.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec] Length = 72 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K+YN ++G+G I+ G D ++ S + G L G V +DY Q Sbjct: 1 MTKGTVKFYNAERGWGAISSPDLPP-GFDAWVGFSMIEMDGYRFLEAGDRVEFDYEQVRQ 59 Query: 62 N 62 + Sbjct: 60 D 60 >gi|312092494|ref|XP_003147356.1| cold-shock DNA-binding domain-containing protein [Loa loa] gi|307757478|gb|EFO16712.1| cold-shock DNA-binding domain-containing protein [Loa loa] Length = 227 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 8/64 (12%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKY 65 +N GYGFI ++GDD+F+H++AV L +L +G+ V +D V+ G Sbjct: 1 FNVKNGYGFI---NRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVVEGQ-KGPE 56 Query: 66 SAEN 69 +A Sbjct: 57 AANV 60 >gi|157373787|ref|YP_001472387.1| cold-shock DNA-binding domain-containing protein [Shewanella sediminis HAW-EB3] gi|157316161|gb|ABV35259.1| cold-shock DNA-binding domain protein [Shewanella sediminis HAW-EB3] Length = 217 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 2 VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + RG+ ++W N +KG+GFI PE +G DVF+H SA+ + G + Y + Sbjct: 1 MERGTLVRW-NDEKGFGFIKPEAG--NGKDVFIHISALKHMARKPMV-GDAIQY-LTEQQ 55 Query: 61 ANGKYSA 67 A+GK A Sbjct: 56 ADGKVKA 62 >gi|319404271|emb|CBI77864.1| cold shock protein [Bartonella rochalimae ATCC BAA-1498] Length = 193 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH + + G EG V Q + Sbjct: 30 GVIKWFDGSKGYGFIIPDLP--GLPDILLHVTVMRRDGFQTALEGAKVICVVKQTERG 85 Score = 60.3 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N +KG+GF++ + +D+F+H + GL L GQ+V + + + Sbjct: 119 LERAIVKWFNREKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 174 Query: 62 NGKYSAE 68 G +AE Sbjct: 175 KGLMTAE 181 >gi|220911683|ref|YP_002486992.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] gi|219858561|gb|ACL38903.1| cold-shock DNA-binding domain protein [Arthrobacter chlorophenolicus A6] Length = 127 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ DKG+GF+ E G +VFL +S++ G+ L G V + A Sbjct: 1 MPTGKVKWYDKDKGFGFLA----GEDGQEVFLPKSSL-PEGVTELKAGTRVEFGV----A 51 Query: 62 NGKYSAENLKL 72 +G+ A+ L L Sbjct: 52 DGRKGAQALGL 62 >gi|99080990|ref|YP_613144.1| cold-shock DNA-binding protein family protein [Ruegeria sp. TM1040] gi|99037270|gb|ABF63882.1| cold-shock DNA-binding protein family [Ruegeria sp. TM1040] Length = 179 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++P KGYGFI + G D+ LH + + + G ++ +G + G Sbjct: 12 RGLVKWFDPAKGYGFIV---CPDDGPDILLHVNVLRNFGQSSVADGAGIEV-VTHRTDRG 67 Query: 64 KYSAENLKLVPKSSN 78 + E + + P Sbjct: 68 VQAVEIVSITPPERE 82 Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G E DVFLH + +GL ++ G+ + + + G+ Sbjct: 107 RVKWFDKAKGFGFANVFGRDE---DVFLHVEVLRQSGLSDVQSGEALAMRVI-DGKRGRM 162 Query: 66 SAENL 70 + + L Sbjct: 163 AVDVL 167 >gi|294636900|ref|ZP_06715228.1| cold-shock DNA-binding domain protein [Edwardsiella tarda ATCC 23685] gi|291089891|gb|EFE22452.1| cold-shock DNA-binding domain protein [Edwardsiella tarda ATCC 23685] Length = 69 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+P G G I+P + GDD+++ R+A+AS+ L EGQ V + + Sbjct: 3 LKMGFVKWYDPSAGLGVISP---LDGGDDLYVSRTAIASSRNKLLREGQRVEF----STP 55 Query: 62 NGKYS--AENL 70 G+ S AE++ Sbjct: 56 RGRRSQIAEDV 66 >gi|39935591|ref|NP_947867.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris CGA009] gi|39649444|emb|CAE27966.1| cold shock DNA binding protein [Rhodopseudomonas palustris CGA009] Length = 235 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGF+ P+ DV LH + + G EG + + VQ A G Sbjct: 71 GVIKWFDASKGYGFVVPD---NGWPDVLLHVTVLRRDGYQTAYEGARIVVECVQR-AKGY 126 Query: 65 YSAENLKLVPKSS 77 + + + ++ Sbjct: 127 QAFRIVSMDESTA 139 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59 + R +KW+N +G+GF+T E D+F+H + G+ L GQ LV + Sbjct: 160 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFG---P 213 Query: 60 DANGKYSAE 68 + G +AE Sbjct: 214 GSKGMMAAE 222 >gi|238063669|ref|ZP_04608378.1| DNA binding protein [Micromonospora sp. ATCC 39149] gi|237885480|gb|EEP74308.1| DNA binding protein [Micromonospora sp. ATCC 39149] Length = 150 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++ +GYGFI P+G GDDVF+H + V L G V Y+ V+N+ Sbjct: 1 MLTGRVVRFDEVRGYGFIAPDG---GGDDVFVHANTVDGDKWA-LGPGVPVEYEAVENER 56 Query: 62 NGKYSAENLKLVPKS 76 K A ++++ + Sbjct: 57 GPK--ALTVRVLGPA 69 >gi|322815184|gb|EFZ23897.1| mitochondrial RNA binding protein, putative [Trypanosoma cruzi] Length = 142 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 7/71 (9%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60 ++G + + +G+GFI + + F+H SA+ + G +LT GQ V ++ Sbjct: 18 NKGKVISWMSGRGFGFIEDDTDKKQH---FVHFSALQTETGGFRSLTVGQEVEFEVA--S 72 Query: 61 ANGKYSAENLK 71 +G+ AEN+ Sbjct: 73 QDGRTRAENVT 83 >gi|119628220|gb|EAX07815.1| lin-28 homolog (C. elegans), isoform CRA_b [Homo sapiens] Length = 214 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHR-----SAVASAGLFNLTEGQLVTYD 55 G KW+N G+GF++ + DVF+H+ S + G +L EG+ V + Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQVRLIPSKLHMEGFRSLKEGEAVEFT 101 Query: 56 YVQNDAN 62 + ++ Sbjct: 102 FKKSAKG 108 >gi|71422058|ref|XP_812012.1| mitochondrial RNA binding protein [Trypanosoma cruzi strain CL Brener] gi|70876741|gb|EAN90161.1| mitochondrial RNA binding protein, putative [Trypanosoma cruzi] Length = 142 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 7/71 (9%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQND 60 ++G + + +G+GFI + + F+H SA+ + G +LT GQ V ++ Sbjct: 18 NKGKVISWMSGRGFGFIEDDTDKKQH---FVHFSALQTETGGFRSLTVGQEVEFEVA--S 72 Query: 61 ANGKYSAENLK 71 +G+ AEN+ Sbjct: 73 QDGRTRAENVT 83 >gi|319405712|emb|CBI79335.1| cold shock protein [Bartonella sp. AR 15-3] Length = 191 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH + + G EG V Q + Sbjct: 28 GVIKWFDGSKGYGFIIPDFP--GLPDILLHVTVMRRDGFQTALEGAKVICVVKQTERG 83 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N +KG+GF++ + +D+F+H + GL L GQ+V + + Sbjct: 117 LERAIVKWFNREKGFGFLSR---GQGTEDIFIHMEILRRFGLAELRSGQVVLVRFGKG-K 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMTAE 179 >gi|192291180|ref|YP_001991785.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] gi|192284929|gb|ACF01310.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris TIE-1] Length = 235 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGF+ P+ DV LH + + G EG + + VQ A G Sbjct: 71 GVIKWFDASKGYGFVVPD---NGWPDVLLHVTVLRRDGYQTAYEGARIVVECVQR-AKGY 126 Query: 65 YSAENLKLVPKSS 77 + + + ++ Sbjct: 127 QAFRIVSMDESTA 139 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59 + R +KW+N +G+GF+T E D+F+H + G+ L GQ LV + Sbjct: 160 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFG---P 213 Query: 60 DANGKYSAE 68 + G +AE Sbjct: 214 GSKGMMAAE 222 >gi|322511335|gb|ADX06644.1| putative cold-shock protein CspD [Organic Lake phycodnavirus] Length = 88 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+ E+G + F H S + + G L G+ V+ + + D N K Sbjct: 4 VKWFNKRKGFGFV----LDETGTEYFCHHSDICNDGYKYLRAGEYVSGEVINMDGNKKKL 59 Query: 67 AENLKLVP 74 ++ VP Sbjct: 60 SKICPPVP 67 >gi|293396764|ref|ZP_06641040.1| cold shock protein [Serratia odorifera DSM 4582] gi|291421028|gb|EFE94281.1| cold shock protein [Serratia odorifera DSM 4582] Length = 73 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +GYG I+P + D++++ R A+A+ +L EGQ V + ++ + Sbjct: 7 LKMGRVKWYDQAEGYGVISP---VDGSDEIYVSRRAIANTKNKSLNEGQNVEFSIYRS-S 62 Query: 62 NGKYSAENL 70 +G +A+ + Sbjct: 63 HGLSAADVI 71 >gi|315605858|ref|ZP_07880890.1| cold-shock DNA-binding domain protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312556|gb|EFU60641.1| cold-shock DNA-binding domain protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 165 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++++ D+G+GFI + G DVFLH SA+ + N G V Y + Sbjct: 41 MPTGKVRFFDADRGFGFIAGD----DGADVFLHSSALPAD-HPNPRVGSRVEYSVA-DGR 94 Query: 62 NGKYSAENLKLVPKSSN 78 G A +++ + ++++ Sbjct: 95 KGPQ-ALSVRFLKETAS 110 >gi|218961622|ref|YP_001741397.1| cold-shock domain family protein [Candidatus Cloacamonas acidaminovorans] gi|167730279|emb|CAO81191.1| cold-shock domain family protein [Candidatus Cloacamonas acidaminovorans] Length = 74 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 8/74 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG---LFNLTEGQLVTYDYVQND 60 +G +KW+N +KGYGFI + + E F+H ++ + L L + +LVT+D ++ D Sbjct: 6 KGKVKWFNKNKGYGFIITDDNKE----YFVHWKSIVTNSPRELKVLEQDELVTFDLMETD 61 Query: 61 ANGKYSAENLKLVP 74 G + +++ P Sbjct: 62 -KGIQAINIIRVNP 74 >gi|319407276|emb|CBI80917.1| cold shock protein [Bartonella sp. 1-1C] Length = 191 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ + D+ LH + + G EG V Q + Sbjct: 28 GVIKWFDGSKGYGFIIPDLPSL--PDILLHVTVMRRDGFQTALEGAKVICVVKQTERG 83 Score = 60.3 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N +KG+GF++ + +D+F+H + GL L GQ+V + + + Sbjct: 117 LERAIVKWFNREKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMTAE 179 >gi|154507896|ref|ZP_02043538.1| hypothetical protein ACTODO_00381 [Actinomyces odontolyticus ATCC 17982] gi|293190360|ref|ZP_06608792.1| cold-shock domain protein [Actinomyces odontolyticus F0309] gi|153797530|gb|EDN79950.1| hypothetical protein ACTODO_00381 [Actinomyces odontolyticus ATCC 17982] gi|292820944|gb|EFF79899.1| cold-shock domain protein [Actinomyces odontolyticus F0309] Length = 125 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++++ D+G+GFI + G DVFLH SA+ + N G V Y + Sbjct: 1 MPTGKVRFFDADRGFGFIAGD----DGADVFLHSSALPAD-HANPRVGARVEYSVA-DGR 54 Query: 62 NGKYSAENLKLVPKSSN 78 G A +++ + ++++ Sbjct: 55 KGPQ-ALSVRFLKETAS 70 >gi|125570752|gb|EAZ12267.1| hypothetical protein OsJ_02155 [Oryza sativa Japonica Group] Length = 98 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K ++ G+ FITP+ + +D+F+H+S++ G +L + ++ +D +G Sbjct: 7 KGMVKGFDATNGFSFITPD---DGSEDLFIHQSSLKFDGYRSLNDDDVIELSVGSSD-DG 62 Query: 64 KYSAENLK 71 + A ++ Sbjct: 63 RTKAVDVT 70 >gi|294677870|ref|YP_003578485.1| cold-shock DNA-binding domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294476690|gb|ADE86078.1| cold-shock DNA-binding domain protein [Rhodobacter capsulatus SB 1003] Length = 177 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE--GQLVTYDYVQNDAN 62 G +KW++ KG+GFI E G D+ LH + + + G ++ + G V VQ Sbjct: 13 GRVKWFDAGKGFGFI---LDGEGGPDILLHANVLRNFGQSSVADNAGIRV---LVQATPR 66 Query: 63 GKYSAENLKLVPKSSN 78 G + E L++ P ++ Sbjct: 67 GAQAVEVLEISPPETD 82 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G E DVF+H + +G +L G+ V ++ G+ Sbjct: 108 RVKWFDKGKGFGFANVFGRPE---DVFIHVEVLRRSGFADLAPGEAVCLRVIEG-RRGRM 163 Query: 66 SAE 68 +A+ Sbjct: 164 AAQ 166 >gi|238855264|ref|ZP_04645583.1| cold-shock DNA-binding domain protein [Lactobacillus jensenii 269-3] gi|260664623|ref|ZP_05865475.1| cold shock domain-containing protein CspD [Lactobacillus jensenii SJ-7A-US] gi|282932443|ref|ZP_06337868.1| cold-shock protein CspD [Lactobacillus jensenii 208-1] gi|313471917|ref|ZP_07812409.1| conserved domain protein [Lactobacillus jensenii 1153] gi|238832156|gb|EEQ24474.1| cold-shock DNA-binding domain protein [Lactobacillus jensenii 269-3] gi|239529157|gb|EEQ68158.1| conserved domain protein [Lactobacillus jensenii 1153] gi|260561688|gb|EEX27660.1| cold shock domain-containing protein CspD [Lactobacillus jensenii SJ-7A-US] gi|281303392|gb|EFA95569.1| cold-shock protein CspD [Lactobacillus jensenii 208-1] Length = 73 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K ++ G+GFI + + S F+ +A+ G +L GQ V Y Q Sbjct: 1 MRTGTVKQFDSAAGFGFIDDDLTKAS---YFVFYTAIKENGYKSLEIGQRVRYQLAQGKK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|325962251|ref|YP_004240157.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] gi|323468338|gb|ADX72023.1| cold-shock DNA-binding protein family [Arthrobacter phenanthrenivorans Sphe3] Length = 127 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF+ E G +VFL +S++ G+ L G V + A Sbjct: 1 MPTGKVKWYDKEKGFGFLA----GEDGQEVFLPKSSL-PEGVTELKAGTRVEFGV----A 51 Query: 62 NGKYSAENLKL 72 +G+ A+ L L Sbjct: 52 DGRKGAQALGL 62 >gi|319898944|ref|YP_004159037.1| cold shock protein [Bartonella clarridgeiae 73] gi|319402908|emb|CBI76459.1| cold shock protein [Bartonella clarridgeiae 73] Length = 193 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ S D+ LH + + G EG V Q + Sbjct: 30 GVIKWFDGSKGYGFIVPDFS--DLPDILLHVTVMRRDGFQTALEGAKVVCVVKQTERG 85 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N +KG+GF++ + +D+F+H + GL L GQ+V + + + Sbjct: 119 LERAIVKWFNREKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 174 Query: 62 NGKYSAE 68 G +AE Sbjct: 175 KGLMTAE 181 >gi|227548331|ref|ZP_03978380.1| cold shock protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079649|gb|EEI17612.1| cold shock protein [Corynebacterium lipophiloflavum DSM 44291] Length = 127 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ DKG+GF S +DVF+ + V G+ L GQ + +D+ Sbjct: 1 MPVGKVKWYDADKGFGF----ASNPGDEDVFVGKK-VLPEGVEELVAGQRIEFDFAAGRR 55 Query: 62 NGKYSAENLKLV 73 A +K++ Sbjct: 56 G--PQALRVKVL 65 >gi|298208216|ref|YP_003716395.1| cold-shock DNA-binding domain protein [Croceibacter atlanticus HTCC2559] gi|83848137|gb|EAP86007.1| cold-shock DNA-binding domain protein [Croceibacter atlanticus HTCC2559] Length = 64 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI EG+ E F+H + + + + E V ++ Q + Sbjct: 1 MQTGTVKFFNDTKGFGFIKEEGTNEEH---FVHVTGL----IDEIREDDRVEFELKQGNK 53 Query: 62 NGKYSAENLKLV 73 +A N++++ Sbjct: 54 G--MNAVNVRVI 63 >gi|47563679|dbj|BAD20296.1| cold shock protein like [Pseudomonas fluorescens] Length = 37 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39 G++KW+N KGYGFI E G DVF+H A+ Sbjct: 4 RETGNVKWFNDAKGYGFIQRE----DGKDVFVHYRAIR 37 >gi|259419058|ref|ZP_05742975.1| cold-shock DNA-binding protein family [Silicibacter sp. TrichCH4B] gi|259345280|gb|EEW57134.1| cold-shock DNA-binding protein family [Silicibacter sp. TrichCH4B] Length = 180 Score = 62.7 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++P KGYGFI ++G D+ LH + + + G ++ +G + G Sbjct: 12 RGLVKWFDPAKGYGFIV---CPDNGPDILLHVNVLRNFGQSSIADGAGIEV-VTHRTDRG 67 Query: 64 KYSAENLKLVPKSSN 78 + E + + P Sbjct: 68 VQAVEIVSITPPERE 82 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G E DVFLH + +GL ++ G+ + ++ G+ Sbjct: 107 RVKWFDKAKGFGFANVFGRDE---DVFLHVEVLRQSGLSDVQSGEALAMRVIEG-KRGRM 162 Query: 66 SAENL 70 + + L Sbjct: 163 AVDVL 167 >gi|55378476|ref|YP_136326.1| cold shock protein [Haloarcula marismortui ATCC 43049] gi|55231201|gb|AAV46620.1| cold shock protein [Haloarcula marismortui ATCC 43049] Length = 64 Score = 62.7 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++N GYGFI E S E DVF H + +L EGQ V ++ Q D Sbjct: 1 MATGTVDFFNDTGGYGFIDTEDSDE---DVFFHMEDIDG---PDLEEGQEVEFEIEQADK 54 Query: 62 NGKYSAENLKLV 73 + A+NL + Sbjct: 55 GPR--AKNLTRL 64 >gi|254494842|ref|ZP_01051872.2| 'cold-shock' DNA-binding protein [Polaribacter sp. MED152] gi|213690424|gb|EAQ41300.2| 'cold-shock' DNA-binding protein [Polaribacter sp. MED152] Length = 63 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFIT EG+ + F+H S + + E V +D Q+ Sbjct: 1 MNKGTVKFFNESKGFGFITEEGTNKEH---FVHVSGLVDE----IRENDEVEFDL-QDGR 52 Query: 62 NGKYSAENLKLV 73 G +A N++++ Sbjct: 53 KG-LNAVNVRVL 63 >gi|330983247|gb|EGH81350.1| cold shock protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 36 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 4/37 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++KW+N +KG+GFITP +SGDD+F+H A+ Sbjct: 4 RQTGTVKWFNDEKGFGFITP----QSGDDLFVHFKAI 36 >gi|313126739|ref|YP_004037009.1| cold-shock DNA-binding protein family [Halogeometricum borinquense DSM 11551] gi|312293104|gb|ADQ67564.1| cold-shock DNA-binding protein family [Halogeometricum borinquense DSM 11551] Length = 64 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI E S E DVF H V G +L EGQ V +D Q D Sbjct: 1 MAKGTVAFFNDTGGYGFIESEDSDE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54 Query: 62 NGKYSAENLKLV 73 + A+NL+ + Sbjct: 55 GPR--AKNLQRL 64 >gi|316934326|ref|YP_004109308.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315602040|gb|ADU44575.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 231 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGF+ P+ DV LH + + G EG + + VQ A G Sbjct: 67 GFIKWFDASKGYGFVVPD---NGWPDVLLHVTVLRRDGYQTAYEGARIVVECVQR-AKGY 122 Query: 65 YSAENLKLVPKSS 77 + + + ++ Sbjct: 123 QAFRVVSMDESTA 135 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ--LVTYDYVQN 59 + R +KW+N +G+GF+T E D+F+H + G+ L GQ LV + Sbjct: 156 LERAQVKWFNRLRGFGFLT---CGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFG---P 209 Query: 60 DANGKYSAE 68 + G +AE Sbjct: 210 GSKGMMAAE 218 >gi|304385163|ref|ZP_07367509.1| CspA family cold shock transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|304329357|gb|EFL96577.1| CspA family cold shock transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 73 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++ KGYGFI ++G+ F+H SAV S L E ++V + Sbjct: 4 LETGTVTSFDKTKGYGFIE----LDNGEKAFVHYSAVQSDDFKTLDENEVVQLMVAEGPK 59 Query: 62 N 62 Sbjct: 60 G 60 >gi|110667820|ref|YP_657631.1| cold shock protein [Haloquadratum walsbyi DSM 16790] gi|109625567|emb|CAJ51994.1| probable cold shock protein [Haloquadratum walsbyi DSM 16790] Length = 64 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI E S E DVF H V G +L EGQ V +D Q D Sbjct: 1 MAKGTVAFFNDTGGYGFIESEDSEE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54 Query: 62 NGKYSAENLKLV 73 + A NL+ + Sbjct: 55 GPR--ATNLQRL 64 >gi|49474233|ref|YP_032275.1| cold shock protein [Bartonella quintana str. Toulouse] gi|49239737|emb|CAF26119.1| Cold shock protein [Bartonella quintana str. Toulouse] Length = 191 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N DKG+GF++ + +D+F+H + GL L GQ+V + + Sbjct: 117 LERAIVKWFNRDKGFGFLSR---GQGTEDIFVHMETLRRFGLAELRSGQVVLVRFGKG-K 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMTAE 179 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH + + G EG + + + Sbjct: 28 GVIKWFDGSKGYGFIIPDLPNF--PDILLHVTVMRRDGFQTALEGAKIVCAVEKTERG 83 >gi|297517468|ref|ZP_06935854.1| cold shock-like protein CspC [Escherichia coli OP50] Length = 42 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 DVF+H SA+ G L EGQ V ++ Q+ G +A N+ + Sbjct: 1 DVFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKGP-AAVNVTAI 42 >gi|312869520|ref|ZP_07729675.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3] gi|311094967|gb|EFQ53256.1| cold shock protein CspB [Lactobacillus oris PB013-T2-3] Length = 67 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K ++ KG+GFIT E +F+H S + L V+ VQ Sbjct: 1 MLEGKVKSFDEQKGWGFITVPHEGE----IFVHYSGIEGQHRRVLHPDDRVSLVIVQG-K 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGPQAAHV 63 >gi|320094620|ref|ZP_08026384.1| cold-shock domain family protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319978456|gb|EFW10035.1| cold-shock domain family protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 125 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 7/75 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++++P++G+GFIT + ++ VFLH SA+ AG + G V Y + Sbjct: 1 MPTGRVRFFDPERGFGFITGDDGSQ----VFLHSSAL-PAGGAHPRAGARVEYSVA-DGR 54 Query: 62 NGKYSAENLKLVPKS 76 G A ++++V ++ Sbjct: 55 KGPQ-ALSVRVVAEA 68 >gi|330885139|gb|EGH19288.1| cold shock protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 36 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 4/40 (10%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 +N +KG+GFITP +SGDD+F+H A+ S G +L EG Sbjct: 1 FNDEKGFGFITP----QSGDDLFVHFKAIQSDGFKSLKEG 36 >gi|51245919|ref|YP_065803.1| hypothetical protein DP2067 [Desulfotalea psychrophila LSv54] gi|50876956|emb|CAG36796.1| hypothetical cold-shock protein [Desulfotalea psychrophila LSv54] Length = 204 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G+IK +N +KGYGFITP+ G+DVFLH A GQ+++Y D Sbjct: 1 MNFGTIKHWNDEKGYGFITPD---NGGNDVFLHIKAFKKRPHR-PEIGQVISYGTTSGD- 55 Query: 62 NGKYSAENLKLVPKSSN 78 G+ A N++ + S+ Sbjct: 56 KGRLRACNVQYMEDKSS 72 >gi|197284614|ref|YP_002150486.1| cold shock protein [Proteus mirabilis HI4320] gi|194682101|emb|CAR41685.1| putative cold shock protein [Proteus mirabilis HI4320] Length = 71 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ +KGYG I + + D+++++ A+A+ LTEGQ V + ++ A Sbjct: 5 LRMGRVKWFDNNKGYGLIV---AKDLEQDIYVNKKAIANTKNKALTEGQDVEFSVIKT-A 60 Query: 62 NGKYSAENL 70 G +A+ + Sbjct: 61 AGLEAADVI 69 >gi|260808771|ref|XP_002599180.1| hypothetical protein BRAFLDRAFT_197924 [Branchiostoma floridae] gi|229284457|gb|EEN55192.1| hypothetical protein BRAFLDRAFT_197924 [Branchiostoma floridae] Length = 121 Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY-DYVQND 60 + RG +K + KG+GFI P + DD+F+H S + G + L +G VTY + Sbjct: 43 MKRGIVKNFCRQKGHGFIKPH---DGSDDIFVHISDI--DGEYVLKDGDEVTYKECPIPP 97 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 98 KNLKVQAIEVTI 109 >gi|49475595|ref|YP_033636.1| cold shock protein [Bartonella henselae str. Houston-1] gi|49238402|emb|CAF27629.1| Cold shock protein [Bartonella henselae str. Houston-1] Length = 191 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH + + G + EG V + + Sbjct: 28 GVIKWFDGSKGYGFIVPDLPNC--PDILLHVTVMRRDGFQTVLEGAKVVCAVEKTERG 83 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N DKG+GF++ + +D+F+H + GL L GQ+V + + + Sbjct: 117 LERAIVKWFNRDKGFGFLSR---GQGTEDIFVHMETLRRFGLAELRSGQVVLVRFGKGE- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMTAE 179 >gi|88855706|ref|ZP_01130369.1| cold shock protein [marine actinobacterium PHSC20C1] gi|88815030|gb|EAR24889.1| cold shock protein [marine actinobacterium PHSC20C1] Length = 127 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K+Y+ +KG+GFI ++ G +VFLH SA+ AG + G + + A Sbjct: 1 MPTGKVKFYDDEKGFGFI----MSDEGQEVFLHASAL-PAGTTGVKAGTRLEFGI----A 51 Query: 62 NGKYSAENLKL 72 +GK A+ L + Sbjct: 52 DGKKGAQALSV 62 >gi|322510909|gb|ADX06222.1| cold-shock DNA-binding domain-containing protein [Organic Lake phycodnavirus 2] Length = 88 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+ E +E F H S ++ G L G+ V+ V D N K Sbjct: 4 VKWFNKRKGFGFVVDETGSE----YFCHHSDISITGYKYLRAGEYVSGTVVNMDGNKKKL 59 Query: 67 AENLKLVP 74 + L VP Sbjct: 60 SNILPPVP 67 >gi|311899759|dbj|BAJ32167.1| putative cold shock protein [Kitasatospora setae KM-6054] Length = 71 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV--ASAGLFNLTEGQLVTYDYVQN 59 + G++KW++ YG+ITP+G G DV ++ +V + L +GQ V YD + Sbjct: 1 METGTVKWFDVHHAYGYITPDG---GGPDVAVYYDSVLADTDEHRFLHQGQRVRYD--ET 55 Query: 60 DANGKYSAENLKLV 73 + AE ++ V Sbjct: 56 VQESRPVAERVRPV 69 >gi|215432621|ref|ZP_03430540.1| cold shock protein A cspA [Mycobacterium tuberculosis EAS054] Length = 61 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 FI PE + DVF+H + + G L E Q V ++ + G + Sbjct: 11 FIAPE---DGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHS-PKGPQA 55 >gi|147902682|ref|NP_001088341.1| cold shock domain containing C2, RNA binding [Xenopus laevis] gi|54038112|gb|AAH84399.1| LOC495181 protein [Xenopus laevis] Length = 152 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 + +G K ++ KG+GFITPE + G D+FLH S + + EG VTY Sbjct: 67 LSKGVCKCFSRSKGHGFITPE---DGGPDIFLHISDIEGE--YVPMEGDEVTYKVCTIPP 121 Query: 61 ANGKYSAENLKL 72 N K+ A +K+ Sbjct: 122 KNEKHQAVEVKI 133 >gi|313674903|ref|YP_004052899.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM 4126] gi|312941601|gb|ADR20791.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM 4126] Length = 63 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G++K++N KG+GFI E + D F+H S + + ++ E V Y+ Q+ Sbjct: 1 MNKGTVKFFNDSKGFGFIIDESTQ---QDYFVHVSGL----IDDIRENDEVVYEL-QDGK 52 Query: 62 NGKYSAENLKL 72 G +A N+KL Sbjct: 53 KG-LNAVNVKL 62 >gi|227364737|ref|ZP_03848786.1| major cold shock protein [Lactobacillus reuteri MM2-3] gi|227070196|gb|EEI08570.1| major cold shock protein [Lactobacillus reuteri MM2-3] Length = 72 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +K ++ KG+GFIT E +F+H S + L + V+ VQ Sbjct: 6 MLKGKVKSFDEQKGWGFITVPHEGE----IFVHYSGIEGTRRRILHPDEEVSLVIVQGQ- 60 Query: 62 NGKYSAEN 69 G +A Sbjct: 61 KGPQAAHV 68 >gi|295096004|emb|CBK85094.1| Cold shock proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 46 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 G +KW+ DKG+GFI+P + DVF+H SA+ Sbjct: 7 GLVKWFKEDKGFGFISP---VDGSKDVFVHFSALQGENFKT 44 >gi|254511315|ref|ZP_05123382.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium KLH11] gi|221535026|gb|EEE38014.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium KLH11] Length = 168 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +KW++ KG+GF GS+E DVFLH + +GL +L G+ + + + Sbjct: 96 LEAARVKWFDKGKGFGFANVFGSSE---DVFLHIEVLRRSGLADLQPGEALAMRVI-DGK 151 Query: 62 NGKYSAENL 70 G+ +A+ L Sbjct: 152 RGRMAAQVL 160 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG +KW++P KGYGF+ + + G D+ LH + + + G ++ +G + G Sbjct: 5 RGHVKWFDPAKGYGFVVSD---DGGPDILLHVNVLRNFGQSSVADGAGIEI-MTHKTDRG 60 Query: 64 KYSAENLKLVPK 75 + E + + P Sbjct: 61 VQAVEVISVDPP 72 >gi|55378475|ref|YP_136325.1| cold shock protein [Haloarcula marismortui ATCC 43049] gi|55231200|gb|AAV46619.1| cold shock protein [Haloarcula marismortui ATCC 43049] Length = 64 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++N GYGFI + + E DVF H V G +L EGQ V +D Q D Sbjct: 1 MATGTVDFFNDTGGYGFIETDDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54 Query: 62 NGKYSAENLKLV 73 + A+NL+ + Sbjct: 55 GPR--AKNLERL 64 >gi|84503413|ref|ZP_01001473.1| cold shock DNA-binding domain protein [Oceanicola batsensis HTCC2597] gi|84388200|gb|EAQ01152.1| cold shock DNA-binding domain protein [Oceanicola batsensis HTCC2597] Length = 179 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW+N DKG+GF G T+ DVF+H + ++GL +L G+ V + + GK Sbjct: 107 RVKWFNKDKGFGFANVFGGTD---DVFIHVEVLRASGLADLQPGEAVALRVI-DGRRGKM 162 Query: 66 SAEN 69 ++E Sbjct: 163 ASEV 166 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW++P +G+GF+ E + G D+ LH + + + G ++ +G ++ Q G Sbjct: 13 GTVKWFDPGRGFGFVVSE---DGGPDILLHANVLRNFGQSSVADGAKISI-LAQTTQRG 67 >gi|262203035|ref|YP_003274243.1| cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] gi|262086382|gb|ACY22350.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis DSM 43247] Length = 164 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G + Y+ ++G+GF+ PE G DVFLH + + +L G V++D + D K Sbjct: 9 GKVVHYDTNRGFGFLAPES---GGADVFLHINDIDID-ESSLKPGAKVSFDVEETDRGAK 64 Query: 65 YSAENLKLVPKS 76 A N+ + ++ Sbjct: 65 --AVNVAVTEEA 74 >gi|301620236|ref|XP_002939487.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2 [Xenopus (Silurana) tropicalis] gi|301620238|ref|XP_002939488.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3 [Xenopus (Silurana) tropicalis] gi|301620240|ref|XP_002939489.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 4 [Xenopus (Silurana) tropicalis] gi|301620242|ref|XP_002939490.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 5 [Xenopus (Silurana) tropicalis] Length = 153 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQND 60 V++G K ++ KG+GFITP + G D+FLH S + + EG VTY Sbjct: 68 VYKGVCKCFSRSKGHGFITP---VDGGPDIFLHISDIEGE--YVPAEGDEVTYKVCTVPP 122 Query: 61 ANGKYSAENLKL 72 N K+ A +K+ Sbjct: 123 KNEKHQAVEVKI 134 >gi|301620234|ref|XP_002939486.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1 [Xenopus (Silurana) tropicalis] Length = 214 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQND 60 V++G K ++ KG+GFITP + G D+FLH S + + EG VTY Sbjct: 129 VYKGVCKCFSRSKGHGFITP---VDGGPDIFLHISDIEGE--YVPAEGDEVTYKVCTVPP 183 Query: 61 ANGKYSAENLKL 72 N K+ A +K+ Sbjct: 184 KNEKHQAVEVKI 195 >gi|227486664|ref|ZP_03916980.1| cold shock protein CspA [Anaerococcus lactolyticus ATCC 51172] gi|227235376|gb|EEI85391.1| cold shock protein CspA [Anaerococcus lactolyticus ATCC 51172] Length = 66 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGLFNLTEGQLVTYDYVQND 60 + G +K+++ KG+GFI G+D+F+H S + S L G V ++ ++ Sbjct: 1 MSIGVVKFFDNKKGFGFI-----KWGGEDLFVHFSDIVSEEEFKKLETGDNVEFEKIEAP 55 Query: 61 ANGKYSAENLKLV 73 A+ +K + Sbjct: 56 RG--PQAKKVKKI 66 >gi|110638737|ref|YP_678946.1| cold-shock DNA-binding protein family protein [Cytophaga hutchinsonii ATCC 33406] gi|110281418|gb|ABG59604.1| cold-shock DNA-binding protein family [Cytophaga hutchinsonii ATCC 33406] Length = 63 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K++N KG+GFI ESG + F+H S + + E VT++ + Sbjct: 1 MNNGTVKFFNNSKGFGFII---EKESGKEYFVHVSGLVDE----IRENDEVTFELEKGKK 53 Query: 62 NGKYSAENLKLV 73 +A N+KLV Sbjct: 54 G--LNAVNVKLV 63 >gi|73540243|ref|YP_294763.1| cold-shock DNA-binding protein family protein [Ralstonia eutropha JMP134] gi|72117656|gb|AAZ59919.1| cold-shock DNA-binding protein family [Ralstonia eutropha JMP134] Length = 195 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K +N DKG+GFI P + G D+F+H S G G+ +T+ V + +GK Sbjct: 14 GTLKSWNKDKGFGFIAP---SNGGRDIFVHISDYPRQG-GMPKIGESLTF-LVTLNQDGK 68 Query: 65 YSAENLK 71 A N++ Sbjct: 69 NKAINVQ 75 >gi|134098539|ref|YP_001104200.1| putative DNA binding protein [Saccharopolyspora erythraea NRRL 2338] gi|291003245|ref|ZP_06561218.1| putative DNA binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133911162|emb|CAM01275.1| putative DNA binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 135 Score = 62.3 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 8/75 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQND 60 + G + ++ +GYGF+ P+ + G+DVF+H + + + +L G V ++ + Sbjct: 1 MQTGRVVRFDEVRGYGFVAPD---QGGEDVFVHANDIRAD--KHLFRPGLRVAFEVEDGE 55 Query: 61 ANGKYSAENLKLVPK 75 A ++ +V + Sbjct: 56 RG--LKASDVHIVEQ 68 >gi|148543833|ref|YP_001271203.1| cold-shock DNA-binding protein family protein [Lactobacillus reuteri DSM 20016] gi|184153234|ref|YP_001841575.1| cold shock protein [Lactobacillus reuteri JCM 1112] gi|194468389|ref|ZP_03074375.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri 100-23] gi|300909914|ref|ZP_07127374.1| major cold shock protein [Lactobacillus reuteri SD2112] gi|325682636|ref|ZP_08162153.1| major cold shock protein [Lactobacillus reuteri MM4-1A] gi|62422038|gb|AAX82601.1| putative cold shock protein [Lactobacillus reuteri] gi|148530867|gb|ABQ82866.1| cold-shock DNA-binding protein family [Lactobacillus reuteri DSM 20016] gi|183224578|dbj|BAG25095.1| cold shock protein [Lactobacillus reuteri JCM 1112] gi|194453242|gb|EDX42140.1| cold-shock DNA-binding domain protein [Lactobacillus reuteri 100-23] gi|300892562|gb|EFK85922.1| major cold shock protein [Lactobacillus reuteri SD2112] gi|324978475|gb|EGC15425.1| major cold shock protein [Lactobacillus reuteri MM4-1A] Length = 67 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +K ++ KG+GFIT E +F+H S + L + V+ VQ Sbjct: 1 MLKGKVKSFDEQKGWGFITVPHEGE----IFVHYSGIEGTRRRILHPDEEVSLVIVQGQ- 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 KGPQAAHV 63 >gi|225023129|ref|ZP_03712321.1| hypothetical protein CORMATOL_03178 [Corynebacterium matruchotii ATCC 33806] gi|305681903|ref|ZP_07404707.1| cold-shock DNA-binding domain protein [Corynebacterium matruchotii ATCC 14266] gi|224944352|gb|EEG25561.1| hypothetical protein CORMATOL_03178 [Corynebacterium matruchotii ATCC 33806] gi|305658376|gb|EFM47879.1| cold-shock DNA-binding domain protein [Corynebacterium matruchotii ATCC 14266] Length = 132 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+PD+G+GFI S G+D ++ +S V G+ L GQ V +D+ + A Sbjct: 1 MPIGKVKWYDPDRGFGFI----SNPDGEDCYVGKS-VLPHGVTELHRGQRVDFDFA-SGA 54 Query: 62 NGKYSAENLKLVPK 75 G A +K++ + Sbjct: 55 RGPQ-ALRVKILDE 67 >gi|84687162|ref|ZP_01015043.1| cold shock DNA-binding domain protein [Maritimibacter alkaliphilus HTCC2654] gi|84664750|gb|EAQ11233.1| cold shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2654] Length = 185 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V RG++KW++P KG+GF+ + + G D+ LH + + + G ++ + + VQ+ Sbjct: 20 VQRGTVKWFDPAKGFGFVVAD---QGGPDILLHANVLRNFGQSSVADRAGIEI-VVQDTP 75 Query: 62 NGKYSAENLKLVPKSSN 78 G + E L + S Sbjct: 76 RGMQAVEVLAIHAAESE 92 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G E DVF+H + +GL +L G+ + + G+ Sbjct: 115 RVKWFDKGKGFGFANAFGKPE---DVFIHVEVLRRSGLADLQPGEAIGMRAAMGE-RGRM 170 Query: 66 S 66 + Sbjct: 171 A 171 >gi|114765321|ref|ZP_01444438.1| cold shock DNA-binding domain protein [Pelagibaca bermudensis HTCC2601] gi|114542301|gb|EAU45330.1| cold shock DNA-binding domain protein [Roseovarius sp. HTCC2601] Length = 180 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GF+ + E G D+ LH + + + G ++ +G + Q G Sbjct: 17 GKVKWFDPVKGFGFVIAD---EGGPDILLHANVLRNFGQSSVADGARIEVS-AQRTERGI 72 Query: 65 YSAENLKLVPKSS 77 + E ++ P + Sbjct: 73 QATEVRRIEPPEA 85 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G ++ DVF+H + +GL +L G+ + + N G+ Sbjct: 111 RVKWFDKAKGFGFANVFGRSD---DVFIHIEVLRRSGLADLQPGEALAIRVI-NGKRGQM 166 Query: 66 SAEN 69 + E Sbjct: 167 ATEV 170 >gi|256833261|ref|YP_003161988.1| cold-shock DNA-binding domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686792|gb|ACV09685.1| cold-shock DNA-binding domain protein [Jonesia denitrificans DSM 20603] Length = 127 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K+++ ++G+GFIT + G VFLH +A+ + G V Y + Sbjct: 1 MPTGKVKFFDAERGFGFITGD----DGHQVFLHTTALPTDA-PAPKPGARVEYGVA-DGR 54 Query: 62 NGKYSAENLKLVPKSS 77 G + L P S Sbjct: 55 KGPQALSVRYLDPPPS 70 >gi|38637833|ref|NP_942807.1| hypothetical protein PHG169 [Ralstonia eutropha H16] gi|32527171|gb|AAP85921.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 191 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 7/78 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G +K ++ DKG+GFI DVF H +A+ + + T G V+++ + Sbjct: 1 MKKAGQVKTWHADKGFGFI---DVYADMKDVFFHVTALQTRAV-TPTPGDRVSFELGKG- 55 Query: 61 ANGKYSAENLKLV--PKS 76 +G+ A N+ +V PKS Sbjct: 56 KDGRIQALNVAIVGAPKS 73 >gi|124008225|ref|ZP_01692922.1| conserved domain protein [Microscilla marina ATCC 23134] gi|123986324|gb|EAY26146.1| conserved domain protein [Microscilla marina ATCC 23134] Length = 64 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K++N KG+GFIT +GS + F H S + + EG V ++ + Sbjct: 1 MNTGTVKFFNESKGFGFITEDGSN---KEYFTHVSGLVDD----IREGDEVEFELQEGRK 53 Query: 62 NGKYSAENLKLV 73 +A N+K + Sbjct: 54 G--LNAVNVKRI 63 >gi|295394518|ref|ZP_06804741.1| cold-shock domain family protein [Brevibacterium mcbrellneri ATCC 49030] gi|294972697|gb|EFG48549.1| cold-shock domain family protein [Brevibacterium mcbrellneri ATCC 49030] Length = 120 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 8/64 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ +KG+GF+T + D+FLH++A+ G+ + G + +D V + Sbjct: 1 MPVGRVKWFDQEKGFGFVTSDEG-----DMFLHQTAL-PDGVK-VAPGTRLEFDVV-DGR 52 Query: 62 NGKY 65 GK Sbjct: 53 RGKQ 56 >gi|323456576|gb|EGB12443.1| hypothetical protein AURANDRAFT_61070 [Aureococcus anophagefferens] Length = 789 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 6/74 (8%) Query: 5 GSIKWYNPD-KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ + K YGF+ P + G D+F+H V L G V + Y +G Sbjct: 596 GRVKWFDVERKQYGFLAP---ADHGPDLFVHAGDVVGCARR-LAPGDAVEFAYGIQAQSG 651 Query: 64 KYSA-ENLKLVPKS 76 + A + ++LVP + Sbjct: 652 RPKALDVVRLVPAA 665 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 10/81 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTES--GDD-----VFLHRSAVASAGLFN--LTEGQLVTYD 55 G + W++ K YG I P+ G D VF+H + V + G L V + Sbjct: 451 GRVLWFDARKNYGAIQPDRPLPGCDGGDGGAPYVFVHGNDVEAGGGPGAALRTNDAVEF- 509 Query: 56 YVQNDANGKYSAENLKLVPKS 76 G+ A ++ +V + Sbjct: 510 CRGTCPRGRAKAAHVTVVATA 530 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 17/81 (20%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLT------EGQLVTY 54 G + ++ +GFI P+ G++ FLH GL L GQ V + Sbjct: 695 GVVVRFDAQHRWGFIRPDDPACQPEAGGENFFLH-------GLDVLDGGGPVVAGQAVEF 747 Query: 55 DYVQNDANGKYSAENLKLVPK 75 V++ A + ++L P Sbjct: 748 AVVRSAARRCKAVHCVRLEPP 768 >gi|300932619|ref|ZP_07147875.1| cold shock protein [Corynebacterium resistens DSM 45100] Length = 127 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ D+GYGF+ S +DV++ S V G+ L +GQ + Y++V Sbjct: 1 MPTGRVKWYDADRGYGFV----SNPGDEDVYVG-SQVLPDGVDELVKGQRMEYEFVAGRR 55 Query: 62 NGK 64 + Sbjct: 56 GPQ 58 >gi|227832587|ref|YP_002834294.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975] gi|262182930|ref|ZP_06042351.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975] gi|227453603|gb|ACP32356.1| cold shock protein [Corynebacterium aurimucosum ATCC 700975] Length = 126 Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ DKG+GF+ S +DV++ R+ V G+ L +GQ + +D+ Sbjct: 1 MPIGKVKWYDADKGFGFV----SNPGDEDVYVGRN-VLPKGVDELHQGQRIEFDFAAGRR 55 Query: 62 NGKYSAENLKLV 73 A +K++ Sbjct: 56 G--PQALRVKVL 65 >gi|76803160|ref|YP_331255.1| cold shock protein [Natronomonas pharaonis DSM 2160] gi|76559025|emb|CAI50623.1| probable cold shock protein [Natronomonas pharaonis DSM 2160] Length = 64 Score = 61.5 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++N GYGFI E + E DVF H V G +L EGQ V +D + D Sbjct: 1 MATGTVDFFNDTGGYGFIETEDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEEADK 54 Query: 62 NGKYSAENLKLV 73 + A NL + Sbjct: 55 GPR--ATNLTRL 64 >gi|297572154|ref|YP_003697928.1| cold-shock DNA-binding domain protein [Arcanobacterium haemolyticum DSM 20595] gi|296932501|gb|ADH93309.1| cold-shock DNA-binding domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 143 Score = 61.5 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 8/77 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +K+++ KG+GFI + G V++ +SAV G+ L G V Y D Sbjct: 20 VPTGKVKFFDEQKGFGFIAGD----DGAQVYVAQSAV-PLGVK-LRPGTRVEYGV--GDT 71 Query: 62 NGKYSAENLKLVPKSSN 78 +A ++ ++ K ++ Sbjct: 72 RRGPAALSVSVIKKETS 88 >gi|55379017|ref|YP_136867.1| cold shock protein [Haloarcula marismortui ATCC 43049] gi|55231742|gb|AAV47161.1| cold shock protein [Haloarcula marismortui ATCC 43049] Length = 64 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++N GYGFI + + E DVF H V G +L EGQ V +D Q D Sbjct: 1 MAEGTVDFFNDTGGYGFIETDDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54 Query: 62 NGKYSAENLKLV 73 + A NL + Sbjct: 55 GPR--ATNLTRL 64 >gi|332293443|ref|YP_004432052.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171529|gb|AEE20784.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 64 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H+G++K++N KG+GFI E + + F+H + + + + EG V ++ + Sbjct: 1 MHKGTVKFFNDTKGFGFINEEEANQEH---FVHVTGL----IDEVREGDAVEFELKEGKK 53 Query: 62 NGKYSAENLKLV 73 +A N++++ Sbjct: 54 G--LNAVNVRVI 63 >gi|317491464|ref|ZP_07949900.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921011|gb|EFV42334.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 69 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +G+G I+P + G+D++++RS +A++ LTEGQ V + Sbjct: 3 LKMGLVKWYSQSEGFGIISP---LDGGNDIYVNRSGIANSRKKLLTEGQRVEFSTYLGSR 59 Query: 62 NGKYSAENL 70 +AE++ Sbjct: 60 G--LTAEDV 66 >gi|312891332|ref|ZP_07750850.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] gi|311296193|gb|EFQ73344.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] Length = 63 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GFI P + ++F+H S + + + E V Y+ + Sbjct: 1 MQSGTVKFFNETKGFGFIVP---SNGDSEIFVHSSGL----IDQIRENDSVNYEVERGKK 53 Query: 62 NGKYSAENLKLV 73 ++A N+K+V Sbjct: 54 G--FNAVNVKVV 63 >gi|257386713|ref|YP_003176486.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] gi|257169020|gb|ACV46779.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] Length = 69 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++N GYGFI E + + DVF H V G +L EGQ + +D Q D Sbjct: 6 MATGTVDFFNDTGGYGFIETEDADD---DVFFHMEDV---GGPDLEEGQEIEFDIEQADK 59 Query: 62 NGKYSAENLKLV 73 + A N+ + Sbjct: 60 GPR--ATNVTRL 69 >gi|153872773|ref|ZP_02001567.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS] gi|152070763|gb|EDN68435.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS] Length = 189 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + ++ +G+GFI + +E DVF+H + +L+ GQ V +D Q D Sbjct: 2 EGIVVKFDKKRGFGFIRSDKFSE---DVFVHLKNIREQ--QSLSPGQKVEFDTEQTDKG- 55 Query: 64 KYSAENL 70 SA N+ Sbjct: 56 -LSAINV 61 >gi|261314020|ref|ZP_05953217.1| cold-shock family protein [Brucella pinnipedialis M163/99/10] gi|261303046|gb|EEY06543.1| cold-shock family protein [Brucella pinnipedialis M163/99/10] Length = 150 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV--TYDYVQNDANGK 64 +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + G Sbjct: 81 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFG---TGEKGL 134 Query: 65 YSAE 68 +AE Sbjct: 135 MAAE 138 >gi|253575315|ref|ZP_04852653.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845312|gb|EES73322.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 109 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 7/68 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G ++ Y D+G+GFI E G DV H +AV A L G VT++ + D GK Sbjct: 47 GYVRRYYDDRGFGFI----GREDGSDVHFHINAVQGA--DKLRTGDRVTFEIGE-DKRGK 99 Query: 65 YSAENLKL 72 +A+N++L Sbjct: 100 PTAKNVRL 107 >gi|295134497|ref|YP_003585173.1| cold shock protein [Zunongwangia profunda SM-A87] gi|294982512|gb|ADF52977.1| cold shock protein [Zunongwangia profunda SM-A87] Length = 63 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K++N KG+GFIT EG D F+H + + + + EG V +D + Sbjct: 1 MSKGTVKFFNDSKGFGFITEEGVD---KDHFVHVTGL----IDEIREGDEVKFDLQEGKR 53 Query: 62 NGKYSAENLKLV 73 +A N++++ Sbjct: 54 G--LNAVNVEVI 63 >gi|269139514|ref|YP_003296215.1| cold shock-like protein [Edwardsiella tarda EIB202] gi|267985175|gb|ACY85004.1| cold shock-like protein [Edwardsiella tarda EIB202] gi|304559403|gb|ADM42067.1| Cold shock protein CspI [Edwardsiella tarda FL6-60] Length = 69 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+P G G I+P + GDD++++R+ +ASA L EGQ V + + Sbjct: 3 LKMGFVKWYDPSAGLGVISP---LDGGDDLYVNRTGIASARNKLLREGQRVEFSTPRGRR 59 Query: 62 NGKYSAENL 70 + AE++ Sbjct: 60 S--QMAEDV 66 >gi|172041246|ref|YP_001800960.1| putative cold shock protein [Corynebacterium urealyticum DSM 7109] gi|171852550|emb|CAQ05526.1| putative cold shock protein [Corynebacterium urealyticum DSM 7109] Length = 127 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++W++ DKG+GF+ S +DV++ V G+ L GQ V Y++V Sbjct: 1 MPVGKVRWFDADKGFGFV----SNPGEEDVYVG-RQVLPEGVTELVPGQRVEYEFV-AAR 54 Query: 62 NGKYS 66 G + Sbjct: 55 RGPQA 59 >gi|260770106|ref|ZP_05879039.1| integral membrane protein [Vibrio furnissii CIP 102972] gi|260615444|gb|EEX40630.1| integral membrane protein [Vibrio furnissii CIP 102972] gi|315182622|gb|ADT89535.1| hypothetical protein vfu_B01354 [Vibrio furnissii NCTC 11218] Length = 195 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G I ++ DKGYGFIT P+G ++ +F+H SAV L + V++D Q D Sbjct: 2 KGKITRWHDDKGYGFITAPDGKSK----IFVHISAVKHRA-KRLAKNDTVSFDVEQ-DRK 55 Query: 63 GKYSAENLKL 72 G+ +A N++L Sbjct: 56 GRLNAVNVEL 65 >gi|240850648|ref|YP_002972048.1| cold shock protein [Bartonella grahamii as4aup] gi|240267771|gb|ACS51359.1| cold shock protein [Bartonella grahamii as4aup] Length = 191 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH + + G EG V + + Sbjct: 28 GVIKWFDGSKGYGFIVPDLPHF--PDILLHVTVMRRDGFQTALEGAKVICAVEKTERG 83 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N DKGYGF++ + +D+F+H + GL L GQ+V + + + Sbjct: 117 LERAIVKWFNRDKGYGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMTAE 179 >gi|25027451|ref|NP_737505.1| putative cold shock protein [Corynebacterium efficiens YS-314] gi|23492733|dbj|BAC17705.1| putative cold shock protein [Corynebacterium efficiens YS-314] Length = 127 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KWY+P++G+GF+ S G+D F+ V G+ L +GQ + +D+ Sbjct: 1 MPVGTVKWYDPERGFGFV----SNPGGEDCFVG-KQVLPKGVTELHQGQRIEFDFAAGRK 55 Query: 62 NGKYSAENLKLVP 74 A +K++ Sbjct: 56 G--PQALRVKVLE 66 >gi|284041216|ref|YP_003391146.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74] gi|283820509|gb|ADB42347.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74] Length = 68 Score = 61.1 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 7/71 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KGYGFI + ++ D+F+H + + + E V ++ V + Sbjct: 1 MQTGVVKFFNESKGYGFIVED---DTNRDIFVHITGLNGI---TIREKDRVQFEVV-DGK 53 Query: 62 NGKYSAENLKL 72 G + + K+ Sbjct: 54 KGLNAVKVKKI 64 >gi|254461278|ref|ZP_05074694.1| cold shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2083] gi|206677867|gb|EDZ42354.1| cold shock DNA-binding domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 173 Score = 61.1 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++KW++P KG+GF+ E E G D+ LH + + + G ++ EG ++ Q G Sbjct: 11 RGAVKWFDPAKGFGFVVAE---EGGADILLHANVLRNFGQNSVAEGAVIEI-LSQETDRG 66 Query: 64 KYSAENLKLVP 74 + E L + P Sbjct: 67 LQAVEVLSIDP 77 Score = 54.6 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF GS D+F+H + +GL +L G+ + + + G Sbjct: 106 RVKWFDKGKGFGFANVFGSD---ADIFVHVEVLRRSGLADLAPGEALALRVI-DGKRGLM 161 Query: 66 SAEN 69 + E Sbjct: 162 AIEV 165 >gi|222479737|ref|YP_002565974.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222452639|gb|ACM56904.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 64 Score = 61.1 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++N GYGFI + + + DVF H V G +L EGQ V ++ ++D Sbjct: 1 MATGKVDFFNDTGGYGFIETDDADD---DVFFHMEDV---GGPDLEEGQEVEFEIEESDK 54 Query: 62 NGKYSAENLKLV 73 + A NL + Sbjct: 55 GPR--ATNLTRL 64 >gi|261330889|emb|CBH13874.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 504 Score = 61.1 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 43/119 (36%) Query: 1 MVHR------GSIKWYNPDKGYGF---------ITPEGSTESGD---------------- 29 M+++ G +K YNP +G+GF I P+ +G Sbjct: 209 MMYQLGEWYEGVVKRYNPMRGFGFLTATHHLQVIPPDVDNRAGSVSDADGQNSQQTASPP 268 Query: 30 ------------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76 DVF+H+S + G L+ G V + + A +++L+ + Sbjct: 269 QATLLRTPVTVGDVFVHQSYIRMQGFRALSTGDRVAFRVGKLPGKDANQAVSVQLLSTA 327 >gi|72393617|ref|XP_847609.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62176758|gb|AAX70857.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70803639|gb|AAZ13543.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 504 Score = 61.1 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 43/119 (36%) Query: 1 MVHR------GSIKWYNPDKGYGF---------ITPEGSTESGD---------------- 29 M+++ G +K YNP +G+GF I P+ +G Sbjct: 209 MMYQLGEWYEGVVKRYNPMRGFGFLTATHHLQVIPPDVDNRAGSVSDADGQNSQQTASPP 268 Query: 30 ------------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76 DVF+H+S + G L+ G V + + A +++L+ + Sbjct: 269 QATLLRTPVTVGDVFVHQSYIRMQGFRALSTGDRVAFRVGKLPGKDANQAVSVQLLSTA 327 >gi|71755901|ref|XP_828865.1| mitochondrial RNA-binding protein [Trypanosoma brucei TREU927] gi|4757566|gb|AAD29082.1| RNA binding protein precursor [Trypanosoma brucei] gi|70834251|gb|EAN79753.1| mitochondrial RNA binding protein [Trypanosoma brucei] gi|261334788|emb|CBH17782.1| RBP16 [Trypanosoma brucei gambiense DAL972] Length = 141 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQN 59 +++G + + +G+GFI + + F+H SA+ + G LT GQ V ++ Sbjct: 17 LNKGKVISWMSGRGFGFIEDDADKKQH---FVHFSALQTETGGFRALTVGQEVEFEVA-- 71 Query: 60 DANGKYSAENLK 71 +G+ AEN+ Sbjct: 72 SQDGRTRAENVT 83 >gi|322368358|ref|ZP_08042927.1| cold shock protein [Haladaptatus paucihalophilus DX253] gi|320552374|gb|EFW94019.1| cold shock protein [Haladaptatus paucihalophilus DX253] Length = 64 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI E S E DVF H V G +L EGQ V +D Q D Sbjct: 1 MAKGTVDFFNDTGGYGFIDTEDSDE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54 Query: 62 NGKYSAENLKLV 73 + A N++ + Sbjct: 55 GPR--ATNVQRL 64 >gi|297493195|ref|XP_002700194.1| PREDICTED: cold shock domain protein A short-like [Bos taurus] gi|296470653|gb|DAA12768.1| cold shock domain protein A short-like [Bos taurus] Length = 261 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG---LF-NLTEGQLVTYDYVQND 60 GS+ + KGYGFI+ + E DVF+H +A+ ++ G+ V +D VQ + Sbjct: 70 GSVVRFKEKKGYGFISMHNTQE---DVFVHHTAITRKNPCMYRGSVENGETVEFDVVQGE 126 Query: 61 ANGKYS 66 K + Sbjct: 127 QGTKAA 132 >gi|126731269|ref|ZP_01747076.1| cold shock DNA-binding domain protein [Sagittula stellata E-37] gi|126708180|gb|EBA07239.1| cold shock DNA-binding domain protein [Sagittula stellata E-37] Length = 175 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GF+ + G D+ LH + + + G ++ +G L+ +VQ G Sbjct: 13 GKVKWFDPVKGFGFVVSDA---GGPDILLHANVLRNFGQSSVADGALIEI-FVQRTDRGV 68 Query: 65 YSAENLKLVPKSS 77 + + L + P + Sbjct: 69 QATQVLSIEPPET 81 Score = 57.3 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G + DVF+H + +GL +L G+ + + + G+ Sbjct: 107 RVKWFDKAKGFGFANVFGKPD---DVFIHIEVLRRSGLSDLQPGEALAIRVI-DGRRGRM 162 Query: 66 SAEN 69 + E Sbjct: 163 AMEV 166 >gi|86130475|ref|ZP_01049075.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] gi|85819150|gb|EAQ40309.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] Length = 64 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H+G++K++N KG+GFI E + + F+H + + + + EG V ++ + Sbjct: 1 MHKGTVKFFNETKGFGFINEEEANQEH---FVHVTGL----IDEVREGDAVEFELKEGKK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|300710595|ref|YP_003736409.1| cold shock protein [Halalkalicoccus jeotgali B3] gi|299124278|gb|ADJ14617.1| cold shock protein [Halalkalicoccus jeotgali B3] Length = 64 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI E S E DVF H V G +L EGQ V +D Q D Sbjct: 1 MAKGTVDFFNDTGGYGFIDSEDSEE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54 Query: 62 NGKYSAENLKLV 73 + A NL+ + Sbjct: 55 GPR--AVNLERL 64 >gi|295696822|ref|YP_003590060.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] gi|295412424|gb|ADG06916.1| cold-shock DNA-binding domain protein [Bacillus tusciae DSM 2912] Length = 769 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G IK +K YGFI P+ E DV+ H S + G EG V +D + + Sbjct: 1 MAKGRIKKLFSEKQYGFIQPDQGRE---DVYFHVSWIK--GF-TPREGLRVEFDVERGEK 54 Query: 62 NGKYSAENLKLVPK 75 + A N+++ K Sbjct: 55 GPR--ARNVRIAEK 66 >gi|15789425|ref|NP_279249.1| cold shock protein [Halobacterium sp. NRC-1] gi|10579749|gb|AAG18729.1| cold shock protein [Halobacterium sp. NRC-1] Length = 74 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++N GYGFI E + E DVF H V G +L EGQ V +D Q D Sbjct: 11 MATGEVDFFNDTGGYGFIETEDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 64 Query: 62 NGKYSAENLKLV 73 + A NL + Sbjct: 65 GPR--ATNLTRL 74 >gi|86138853|ref|ZP_01057425.1| cold shock DNA-binding domain protein [Roseobacter sp. MED193] gi|85824500|gb|EAQ44703.1| cold shock DNA-binding domain protein [Roseobacter sp. MED193] Length = 180 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KG+GF+ + G D+ LH + + + G ++ +G + G Sbjct: 12 QGLVKWFDPTKGFGFVVSDL---GGPDILLHVNVLRNFGQSSVADGTRIEI-VTHRTDRG 67 Query: 64 KYSAENLKLVPKSSN 78 + E L + P Sbjct: 68 VQAVEVLAIHPPERE 82 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW+N KG+GF G +E DVFLH + +GL +L G+ + + + G+ Sbjct: 107 RVKWFNKGKGFGFANIFGRSE---DVFLHVEVLRQSGLADLQPGEALAPRVI-DGKRGQM 162 Query: 66 SAEN 69 +AE Sbjct: 163 AAEV 166 >gi|296225904|ref|XP_002758696.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus] Length = 207 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW+N G+GF++ ST + DVF+H+S + G +L + + V + + ++ Sbjct: 42 GICKWFNVRMGFGFLSMTASTGVALDPAVDVFMHQSKLHMEGFRSLKKDEAVEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|116492939|ref|YP_804674.1| cold-shock DNA-binding protein family protein [Pediococcus pentosaceus ATCC 25745] gi|116103089|gb|ABJ68232.1| cold-shock DNA-binding protein family [Pediococcus pentosaceus ATCC 25745] Length = 69 Score = 60.7 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 + G+++ ++ +KGYGFI T SGD VF H + + S L G+ V Sbjct: 1 METGTVESFDKEKGYGFIE----TASGDKVFAHYTVIQSEDYKTLEVGEKV 47 >gi|323136356|ref|ZP_08071438.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] gi|322398430|gb|EFY00950.1| cold-shock DNA-binding domain protein [Methylocystis sp. ATCC 49242] Length = 191 Score = 60.7 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGF+ P+ + D+ LH + + +GL EG V + Q A G Sbjct: 28 GRIKWFDVAKGYGFVVPD---DGSPDILLHVTILRRSGLQTAFEGARVVCE-AQKRAKGM 83 Query: 65 YSAENLKLVPKSS 77 + + ++ Sbjct: 84 QVFRVIAMDETTA 96 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64 +KW+N KG+GF+T E +D+FLH V G+ L G V V+ + G Sbjct: 122 VKWFNRVKGFGFLTR---GEGTEDIFLHMETVRRYGMTELKPGDSV---LVRYGDGPKGL 175 Query: 65 YSAEN 69 +AE Sbjct: 176 MAAEV 180 >gi|254706561|ref|ZP_05168389.1| cold-shock family protein [Brucella pinnipedialis M163/99/10] Length = 158 Score = 60.7 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV--TYDYVQNDANGK 64 +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + G Sbjct: 89 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFG---TGEKGL 142 Query: 65 YSAE 68 +AE Sbjct: 143 MAAE 146 Score = 51.1 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 KGYGFI P+ D+ LH +++ G EG + + D Sbjct: 2 AKGYGFIVPD--QPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDRG 49 >gi|146307203|ref|YP_001187668.1| hypothetical protein Pmen_2176 [Pseudomonas mendocina ymp] gi|145575404|gb|ABP84936.1| protein of unknown function DUF1294 [Pseudomonas mendocina ymp] Length = 240 Score = 60.7 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G ++ ++ KG+GFI P + G +VF H SA+ G V + D G Sbjct: 7 KGRLRSWDDAKGFGFIQP---QDGGAEVFAHISAMRGD--RRPQPGDEVLF-VAGRDPRG 60 Query: 64 KYSAENLKL 72 + AE+L+L Sbjct: 61 RPRAEHLRL 69 >gi|85716488|ref|ZP_01047459.1| cold shock DNA binding protein [Nitrobacter sp. Nb-311A] gi|85696677|gb|EAQ34564.1| cold shock DNA binding protein [Nitrobacter sp. Nb-311A] Length = 77 Score = 60.7 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +RG++ +N ++G+GF+ + +F+H S V A +L GQ + ++ +++ Sbjct: 10 YRGTVVHWNAERGFGFVQRDTDQRE---IFVHISEVDEA-YESLVLGQRIEFEIAESERK 65 Query: 63 -GKYSAENLKLV 73 G N+ +V Sbjct: 66 PGHPKCVNVDVV 77 >gi|257095960|ref|YP_003169601.1| cold-shock DNA-binding domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048484|gb|ACV37672.1| cold-shock DNA-binding domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 203 Score = 60.7 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQN 59 M G++K +N D+G+GFI P + G ++F+H A G + GQ +T++ + Sbjct: 1 MRIDGTLKSWNDDRGFGFIEP---SLGGQEIFVHIKAFETRLGRPQI--GQRLTFEI-EM 54 Query: 60 DANGKYSAENLKLV 73 +A GK A+ ++ V Sbjct: 55 NAEGKKRAKRVQPV 68 >gi|326381637|ref|ZP_08203331.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] gi|326199884|gb|EGD57064.1| cold-shock protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] Length = 161 Score = 60.7 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 10/80 (12%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN--LTEGQLVTYDYVQ 58 M G + ++ ++G+GF+ P E GDDVFLH + V G+ L G V +D Sbjct: 1 MAVNGKVVHFDTNRGFGFLAP---AEGGDDVFLHINDV---GIDESLLRPGAEVEFDVES 54 Query: 59 NDANGKYSAENLKLVPKSSN 78 D K A N+K+ ++ Sbjct: 55 TDRGAK--ALNVKVTKEAPE 72 >gi|163868307|ref|YP_001609516.1| cold shock protein [Bartonella tribocorum CIP 105476] gi|161017963|emb|CAK01521.1| cold shock protein [Bartonella tribocorum CIP 105476] Length = 191 Score = 60.7 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH + + G EG V + + Sbjct: 28 GVIKWFDGSKGYGFIVPDLPHF--PDILLHVTVMRRDGFQTAMEGAKVICAVEKTERG 83 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW+N DKG+GF++ + +D+F+H + GL L GQ+V + + + Sbjct: 117 LERAIVKWFNRDKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVLVRFGKGE- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMTAE 179 >gi|227539208|ref|ZP_03969257.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300] gi|300770682|ref|ZP_07080561.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33861] gi|227240890|gb|EEI90905.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33300] gi|300763158|gb|EFK59975.1| cold shock protein [Sphingobacterium spiritivorum ATCC 33861] Length = 63 Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KG+GFI P +F+H + + + + E V+Y+ Q Sbjct: 1 MQEGVVKFFNEAKGFGFIIPNSGEGE---IFVHVTGL----IDKIRENDNVSYEVEQGRK 53 Query: 62 NGKYSAENLKLV 73 +A N+K++ Sbjct: 54 G--LNAVNVKVI 63 >gi|50955352|ref|YP_062640.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951834|gb|AAT89535.1| cold shock protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 126 Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 10/71 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K+Y+ +KG+GFI S++ G +VFLH SA+ + + + G + + A Sbjct: 1 MPTGKVKFYDDEKGFGFI----SSDDGQEVFLHASALLAGAV--VKAGSRLEFGI----A 50 Query: 62 NGKYSAENLKL 72 +GK A+ L + Sbjct: 51 DGKRGAQALSV 61 >gi|55379016|ref|YP_136866.1| cold shock protein [Haloarcula marismortui ATCC 43049] gi|55231741|gb|AAV47160.1| cold shock protein [Haloarcula marismortui ATCC 43049] Length = 64 Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI E + E DVF H + G +L EGQ + +D Q D Sbjct: 1 MAKGTVDFFNDTGGYGFIDTEDADE---DVFFHMEDI---GGPDLEEGQELEFDIEQADK 54 Query: 62 NGKYSAENLKLV 73 + A N+ + Sbjct: 55 GPR--ANNVTRL 64 >gi|23502142|ref|NP_698269.1| cold-shock family protein [Brucella suis 1330] gi|161619217|ref|YP_001593104.1| cold shock-like protein cspG [Brucella canis ATCC 23365] gi|163843529|ref|YP_001627933.1| cold shock-like protein cspG [Brucella suis ATCC 23445] gi|254704543|ref|ZP_05166371.1| cold shock-like protein cspG [Brucella suis bv. 3 str. 686] gi|260566213|ref|ZP_05836683.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|261755227|ref|ZP_05998936.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|23348105|gb|AAN30184.1| cold-shock family protein [Brucella suis 1330] gi|161336028|gb|ABX62333.1| Cold shock-like protein cspG [Brucella canis ATCC 23365] gi|163674252|gb|ABY38363.1| Cold shock-like protein cspG [Brucella suis ATCC 23445] gi|260155731|gb|EEW90811.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|261744980|gb|EEY32906.1| cold-shock DNA-binding domain-containing protein [Brucella suis bv. 3 str. 686] Length = 193 Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH +++ EG + + D Sbjct: 28 GHIKWFDVAKGYGFIVPD--QPGLTDILLHVTSLRRDEFQTALEGARIVCEVRHGDRG 83 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KG+GF+T E +D+F+H + G+ L GQ+V + + G + Sbjct: 123 VKWFNRTKGFGFLTR---GEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGE-KGLMA 178 Query: 67 AE 68 AE Sbjct: 179 AE 180 >gi|47114837|emb|CAE48342.1| unnamed protein product [Methylocystis sp. SC2] Length = 183 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KGYGF+ P+ + DD+ LH + + +G+ EG V + Q G Sbjct: 20 GRIKWFDVAKGYGFVVPD---DGSDDILLHVTILRRSGMQTAFEGARVVCE-AQKRVKGM 75 Query: 65 YSAENLKLVPKSS 77 + + ++ Sbjct: 76 QVFRVIAMDESTA 88 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGK 64 +KW+N KG+GF+T E +D+FLH V G+ L G V V+ G Sbjct: 114 VKWFNRMKGFGFLTR---GEGTEDIFLHMETVRRYGMTELKPGDSV---LVRYGGGPKGL 167 Query: 65 YSAEN 69 +AE Sbjct: 168 MAAEV 172 >gi|297626985|ref|YP_003688748.1| Cold shock protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922750|emb|CBL57328.1| Cold shock protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 128 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60 + G +++++PDKG+GFIT + ++ A V G+ ++ GQ V + V + Sbjct: 1 MPSGRVRFFDPDKGFGFITKDEGDGE-----VYFRANVLPDGVTSVKRGQRVEFGIV-DG 54 Query: 61 ANGKYSAENLKLVPKSS 77 G+ + + P S Sbjct: 55 RRGEQALSVELIDPPPS 71 >gi|158294527|ref|XP_315660.4| AGAP005641-PA [Anopheles gambiae str. PEST] gi|157015604|gb|EAA11357.4| AGAP005641-PA [Anopheles gambiae str. PEST] Length = 157 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K ++ KG+GFITP GDD+F+H S + L G V+Y Sbjct: 67 IEEGKVKSFSRSKGHGFITP---NAGGDDIFVHISDIEGE-YVPL-PGDEVSYRLCSIPP 121 Query: 62 N-GKYSAENLKL 72 K A ++++ Sbjct: 122 KYEKVQAIHVQI 133 >gi|91789211|ref|YP_550163.1| cold-shock DNA-binding protein family protein [Polaromonas sp. JS666] gi|91698436|gb|ABE45265.1| cold-shock DNA-binding protein family [Polaromonas sp. JS666] Length = 193 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++K +N ++G GFI + + G ++F+H SA G G+ ++++ V+ D Sbjct: 6 MRFDGTLKKWNAERGLGFIVAD---QGGQEIFVHISAFPRDG-RLPAVGEPLSFE-VEPD 60 Query: 61 ANGKYSAENL 70 +GK A + Sbjct: 61 RDGKKCAVRI 70 >gi|289607243|emb|CBI60851.1| unnamed protein product [Sordaria macrospora] Length = 194 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG IKW++ +G+GF + S+ DV +H S + G L EG +V + + + G Sbjct: 34 RGVIKWFDVTRGFGFAVADDSSLG--DVLIHFSVLEPHGRRTLPEGAIVLCNAARR-SRG 90 Query: 64 KYSAENLKL 72 + E L++ Sbjct: 91 MQAVEILEI 99 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KGYGF+ +G DVF+H + G+ + Q + V+ Sbjct: 132 VKWFNRLKGYGFLVRDGQA---GDVFVHMETLRRGGIEEVEPDQRLVARIVEGQKGPMAI 188 Query: 67 AE 68 A Sbjct: 189 AV 190 >gi|56477051|ref|YP_158640.1| cold shock family protein [Aromatoleum aromaticum EbN1] gi|56313094|emb|CAI07739.1| probable cold shock family protein [Aromatoleum aromaticum EbN1] Length = 189 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%) Query: 1 MVHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G++ KW N D+G+GFI P + G +VF+H SA G G+ ++++ + Sbjct: 1 MRIEGTLGKW-NDDRGFGFIVP---KDGGPEVFVHVSAFPRDGRR-PQIGEPLSFEIELD 55 Query: 60 DANGKYS 66 K + Sbjct: 56 KDRKKRA 62 >gi|237653147|ref|YP_002889461.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] gi|237624394|gb|ACR01084.1| cold-shock DNA-binding domain protein [Thauera sp. MZ1T] Length = 204 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 7/78 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQN 59 M H+G I + DKG+GFITP G G+ VF+H S++A+ EG +LV+Y+ Sbjct: 1 MRHQGKITTWKDDKGFGFITPNG---GGEPVFVHVSSLANRQRR--PEGTELVSYELA-T 54 Query: 60 DANGKYSAENLKLVPKSS 77 DA G+ A+ + V + + Sbjct: 55 DAKGRLQAKAVAFVGERA 72 >gi|325104808|ref|YP_004274462.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM 12145] gi|324973656|gb|ADY52640.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM 12145] Length = 63 Score = 60.3 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K++N KG+GFI G+ + F+H S + + ++E VT+D + Sbjct: 1 MNNGTVKFFNATKGFGFIKENGTD---KEYFVHVSGL----IDEISENDQVTFDLKEGRK 53 Query: 62 NGKYSAENLKL 72 +A N+KL Sbjct: 54 G--LNAVNVKL 62 >gi|323359215|ref|YP_004225611.1| cold shock proteins [Microbacterium testaceum StLB037] gi|323275586|dbj|BAJ75731.1| cold shock proteins [Microbacterium testaceum StLB037] Length = 127 Score = 60.3 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++Y+ +KG+GFI T+ G DVFLH +A+ AG G + + + Sbjct: 1 MPTGKVRFYDEEKGFGFIA----TDDGQDVFLHATAL-PAGTPAPKAGTRLEFGVA-DGK 54 Query: 62 NGKYSAENLKLVP 74 G A +++++ Sbjct: 55 RG-LQALSVRVLE 66 >gi|289581794|ref|YP_003480260.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] gi|289531347|gb|ADD05698.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] Length = 64 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI E + + DVF H + G +L EGQ + ++ Q Sbjct: 1 MAKGTVDFFNDTGGYGFIETEDADD---DVFFHMEDI---GGPDLEEGQELEFEIEQAPK 54 Query: 62 NGKYSAENLKLV 73 + A N++ + Sbjct: 55 GPR--ATNVERL 64 >gi|322493898|emb|CBZ29189.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 529 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 46/118 (38%) Query: 2 VHRGSIKWYNPDKGYGFITP--------EGSTESGD------------------------ 29 ++ G +K YNP++G+GF+T +GS Sbjct: 334 LYEGFVKRYNPNRGFGFLTATAHVTMVNDGSNSDSAAGTPIASVNATAKAVPTTGEEKNP 393 Query: 30 ----------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY--SAENLKLVPK 75 D+F+H+S++ G L G V + +G+ A N++L+P+ Sbjct: 394 KKHLTPVHLGDIFVHQSSMQMEGFRTLPVGGRVRFRI--GYKDGQQTLQAVNVELLPQ 449 >gi|284163596|ref|YP_003401875.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] gi|284013251|gb|ADB59202.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] Length = 64 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI E + E DVF H + G +L EGQ + +D Q Sbjct: 1 MAKGTVDFFNDTGGYGFIETEDADE---DVFFHMEDI---GGPDLEEGQELEFDIEQAPK 54 Query: 62 NGKYSAENLKLV 73 + A N++ + Sbjct: 55 GPR--ATNVERL 64 >gi|294084974|ref|YP_003551734.1| cold shock protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664549|gb|ADE39650.1| cold shock protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 181 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +K++N +GYGF+T E + DVF+H ++ G +L +GQ + + + Sbjct: 118 VKFFNDVRGYGFVTAENIDD---DVFVHSRVLSDCGFHSLLQGQKLLVKVDDSGRGPQVQ 174 Query: 67 AENL 70 A L Sbjct: 175 AVRL 178 Score = 46.9 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 WYN KGYGF+ + + +FLHRS + GL L G V+ +N+ Sbjct: 38 WYNERKGYGFVKIDDTE-----IFLHRSTLDRFGLIRLLTGDRVSVSLTENEHG 86 >gi|292654672|ref|YP_003534569.1| cold shock protein [Haloferax volcanii DS2] gi|291371643|gb|ADE03870.1| cold shock protein [Haloferax volcanii DS2] Length = 64 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G + ++N GYGFI+ + + + DVF H V G +L EGQ V +D Q Sbjct: 1 MAKGKVDFFNDTGGYGFISTDDADD---DVFFHMEDV---GGPDLEEGQEVEFDIEQAPK 54 Query: 62 NGKYSAENLKLV 73 + A N+ + Sbjct: 55 GPR--ATNVTRL 64 >gi|329890044|ref|ZP_08268387.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC 11568] gi|328845345|gb|EGF94909.1| Cold-shock DNA-binding domain protein [Brevundimonas diminuta ATCC 11568] Length = 173 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +KW+N KGYGF+ +G D+F+H + GL +L G V + + Sbjct: 111 VKWFNRTKGYGFVVRDGQA---GDIFVHVETLRRCGLDDLLPGDPVNVRFAEGPKG 163 Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 5 GSIKWYNPDKGYGFITPEGST-ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW++ KGYGFI P+ DV LH +++ AG EG + + + Sbjct: 11 GRVKWFDAGKGYGFIVPDQPDLTEERDVLLHVTSLRDAGHEMAGEGAAIVCECAKRAKG 69 >gi|257053654|ref|YP_003131487.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM 12940] gi|256692417|gb|ACV12754.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM 12940] Length = 64 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++N GYGFI E + E DVF H V G +L EGQ V +D Q + Sbjct: 1 MATGTVDFFNDTGGYGFIETEDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEQAE- 53 Query: 62 NGKYSAENLK 71 G + ++ Sbjct: 54 KGPRATNVVR 63 >gi|91805298|gb|ABE65380.1| CspC [Escherichia coli] Length = 41 Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 VF+H SA+ G L EGQ V ++ Q+ G +A N+ + Sbjct: 1 VFVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKGP-AAVNVTAI 41 >gi|332667975|ref|YP_004450763.1| cold-shock DNA-binding domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332336789|gb|AEE53890.1| cold-shock DNA-binding domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 80 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H G++K++N KG+GFI S E F+H + + + + EG VT++ V+N Sbjct: 18 MHTGTVKFFNESKGFGFIVDNSSNEE---FFVHVTGL----VDKIREGDSVTFN-VENGR 69 Query: 62 NGKYSAENLKL 72 G +A +KL Sbjct: 70 KG-MNAVEVKL 79 >gi|289580237|ref|YP_003478703.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] gi|289529790|gb|ADD04141.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] Length = 64 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI E + + DVF H V G +L EGQ + +D Q D Sbjct: 1 MAKGTVDFFNDTGGYGFIETEDADD---DVFFHMEDV---GGPDLEEGQELEFDIEQADK 54 Query: 62 NGKYSAENLKLV 73 + A N+ + Sbjct: 55 GPR--ATNVTRL 64 >gi|163741420|ref|ZP_02148811.1| Cold-shock protein [Phaeobacter gallaeciensis 2.10] gi|161385154|gb|EDQ09532.1| Cold-shock protein [Phaeobacter gallaeciensis 2.10] Length = 42 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 F+H SA+ AGL L + Q VT+D + +G+ SA NL L Sbjct: 2 FVHISALERAGLTTLNDDQKVTFDI-EAGRDGRESAANLAL 41 >gi|309812365|ref|ZP_07706120.1| cold-shock DNA-binding domain protein [Dermacoccus sp. Ellin185] gi|308433670|gb|EFP57547.1| cold-shock DNA-binding domain protein [Dermacoccus sp. Ellin185] Length = 127 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K+Y+ +KG+GF++ + G DVF+ SA+ AG+ L G + Y V Sbjct: 1 MPVGKVKFYSAEKGFGFVSGD----DGVDVFVPASAL-PAGVSQLRGGMRIEYSVVDGRK 55 Query: 62 NGKYSAENLKLV 73 A +++++ Sbjct: 56 G--AQAMHVQVL 65 >gi|225706812|gb|ACO09252.1| Calcium-regulated heat stable protein 1 [Osmerus mordax] Length = 163 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62 G K ++ +G+GFITP ++ G+D+F+H S + G + EG V+Y Sbjct: 80 TGVCKCFSRSRGHGFITP---SDGGNDIFVHISDI--DGEYVPVEGDEVSYKICSLPPKC 134 Query: 63 GKYSAENLKLV 73 K A ++ ++ Sbjct: 135 DKVQAVDVTII 145 >gi|212712034|ref|ZP_03320162.1| hypothetical protein PROVALCAL_03110 [Providencia alcalifaciens DSM 30120] gi|212685556|gb|EEB45084.1| hypothetical protein PROVALCAL_03110 [Providencia alcalifaciens DSM 30120] Length = 41 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 F+H SA+ S L EGQ V++ N A G +A + L Sbjct: 2 FVHFSAIQSDSFKTLNEGQKVSFSVA-NGAKGPAAANVVAL 41 >gi|325921527|ref|ZP_08183380.1| cold shock protein [Xanthomonas gardneri ATCC 19865] gi|325547997|gb|EGD18998.1| cold shock protein [Xanthomonas gardneri ATCC 19865] Length = 197 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++ +NPD+G+GFITP + GD+VF+H SA + G+L++++ + Sbjct: 4 MRTHGTLTRWNPDRGFGFITP---AQPGDEVFVHISAFPRSA-DAPRIGELISFEI-EPS 58 Query: 61 ANGKYSAENL 70 +G+ A + Sbjct: 59 KDGRQQAVRV 68 >gi|289581257|ref|YP_003479723.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] gi|289530810|gb|ADD05161.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] Length = 64 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI E + E DVF H V G +L EGQ + +D Q D Sbjct: 1 MAKGTVAFFNDTGGYGFIETEDADE---DVFFHMEDV---GGPDLEEGQELEFDIEQADK 54 Query: 62 NGKYSAENLKLV 73 + A N++ + Sbjct: 55 GPR--ATNVERL 64 >gi|93005152|ref|YP_579589.1| cold-shock DNA-binding domain-containing protein [Psychrobacter cryohalolentis K5] gi|92392830|gb|ABE74105.1| cold-shock DNA-binding domain protein [Psychrobacter cryohalolentis K5] Length = 253 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G IK +N DKGYGFI + +E DVF H +V A +++GQ V ++ +ND Sbjct: 3 MQSGKIKHWNSDKGYGFIDVDNQSE---DVFFHIKSVRMA--QPISKGQRVYFNSERNDK 57 Query: 62 NGKYSAEN 69 N + E Sbjct: 58 NQLRATEV 65 >gi|254294221|ref|YP_003060244.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] gi|254042752|gb|ACT59547.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] Length = 166 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW++ KG+GFI P+ + G + LH S + G+ + EG L++ D V+ + Sbjct: 20 GRVKWFDSVKGFGFIIPDDGLD-GQEALLHISILREFGVEQVVEGMLISCDVVKRERG 76 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 IKW+N KGYGF+ G E D+FLH + AGL GQ V + Sbjct: 104 IKWFNRTKGYGFVHRVGEVE---DIFLHMVTLRKAGLEEAEPGQKVWVTIGKGPKG 156 >gi|238920339|ref|YP_002933854.1| cold-shock DNA-binding domain, [Edwardsiella ictaluri 93-146] gi|238869908|gb|ACR69619.1| cold-shock DNA-binding domain, putative [Edwardsiella ictaluri 93-146] Length = 69 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G +KWY+P G G I+P + GDD+++ R+ +ASA L EGQ V + Sbjct: 2 ILKMGFVKWYDPTAGLGVISP---LDGGDDLYVSRTGIASAHNKLLREGQRVEFSTPCGR 58 Query: 61 ANGKYSAENL 70 + AE++ Sbjct: 59 RS--QMAEDV 66 >gi|315506605|ref|YP_004085492.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|315413224|gb|ADU11341.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] Length = 165 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++ +GYGFI P+ + DDVF+H + + LT G V YD V+ + Sbjct: 7 MLTGKVVRFDEVRGYGFIAPD---DGSDDVFVHANMLDGDKWA-LTPGVPVEYDAVETER 62 Query: 62 NGKYSAENLKLVPKSSN 78 K + V ++ Sbjct: 63 GPKAVLVRVSGVAPGAD 79 >gi|302866957|ref|YP_003835594.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029] gi|302569816|gb|ADL46018.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC 27029] Length = 165 Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++ +GYGFI P+ + DDVF+H + + LT G V YD V+ + Sbjct: 7 MLTGKVVRFDEVRGYGFIAPD---DGSDDVFVHANMLDGDKWA-LTPGVPVEYDAVETER 62 Query: 62 NGKYSAENLKLVPKSSN 78 K + V ++ Sbjct: 63 GPKAVLVRVSGVAPGAD 79 >gi|163742804|ref|ZP_02150189.1| cold shock DNA-binding domain protein [Phaeobacter gallaeciensis 2.10] gi|161384059|gb|EDQ08443.1| cold shock DNA-binding domain protein [Phaeobacter gallaeciensis 2.10] Length = 164 Score = 59.6 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++P KG+GF+ + E G D+ LH + + + G ++ +G V G + Sbjct: 1 MKWFDPTKGFGFVVSD---EGGPDILLHVNVLRNFGQSSIADGAEVEL-VTHRTERGVQA 56 Query: 67 AENLKLVPKSSN 78 E L + P + + Sbjct: 57 VEVLSITPPARD 68 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G E DVFLH + +GL L G+ + + + G+ Sbjct: 93 RVKWFDKGKGFGFANVFGRDE---DVFLHVEVLRQSGLSELQPGEALGMRVI-DGKRGRM 148 Query: 66 SAENL 70 + E L Sbjct: 149 AVEVL 153 >gi|157121173|ref|XP_001659860.1| hypothetical protein AaeL_AAEL009235 [Aedes aegypti] gi|108874689|gb|EAT38914.1| conserved hypothetical protein [Aedes aegypti] Length = 159 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G +K ++ KG+GFI+P T GDD+F+H S + L G V+Y Sbjct: 64 IEEGKVKSFSRSKGHGFISP---TAGGDDIFVHISDIEGE-YVPL-PGDEVSY 111 >gi|242022944|ref|XP_002431897.1| calcium-regulated heat stable protein, putative [Pediculus humanus corporis] gi|212517238|gb|EEB19159.1| calcium-regulated heat stable protein, putative [Pediculus humanus corporis] Length = 132 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 6/73 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K + +KG+GFIT S +G+D+F+H S + L G V Y Sbjct: 47 IEKGTVKMFCREKGHGFIT---SNRTGEDIFVHISDIEGE-YVPL-PGDEVEYRLCPIPP 101 Query: 62 N-GKYSAENLKLV 73 K A ++ ++ Sbjct: 102 KFEKTQAVHVNII 114 >gi|226371922|gb|ACO51586.1| Calcium-regulated heat stable protein 1 [Rana catesbeiana] Length = 150 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K ++ KG+GFI PE + G DVFLH S + + EG VT+ Sbjct: 65 VYKGVCKCFSRSKGHGFIIPE---DGGPDVFLHISDIEGE--YVPVEGDEVTFKICSIPP 119 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 120 KNEKRQAVEVVI 131 >gi|260428547|ref|ZP_05782526.1| cold shock DNA-binding domain protein [Citreicella sp. SE45] gi|260423039|gb|EEX16290.1| cold shock DNA-binding domain protein [Citreicella sp. SE45] Length = 180 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GF+ + E G D+ LH + + + G ++ +G + VQ G Sbjct: 17 GKVKWFDPVKGFGFVVAD---EGGPDILLHANVLRNFGQSSVADGARIEV-AVQRTDRGI 72 Query: 65 YSAENLKLVPK 75 + E + P Sbjct: 73 QATEVHHIEPP 83 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G ++ DVF+H + +GL +L G+ + + + G Sbjct: 111 RVKWFDKAKGFGFANVFGRSD---DVFIHIEVLRRSGLADLQPGEALAIRLI-DGKRGLM 166 Query: 66 SAEN 69 + E Sbjct: 167 ATEV 170 >gi|315499811|ref|YP_004088614.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] gi|315417823|gb|ADU14463.1| cold-shock DNA-binding domain protein [Asticcacaulis excentricus CB 48] Length = 184 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG-DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KW++ KGYGFI P+ +G DV LH SA+ G EG + + Sbjct: 18 GRVKWFDAGKGYGFIVPQSPELTGMRDVLLHVSALRDMGRDLAHEGAAIECKIAKRAKG 76 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 11/77 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL--VTYDYVQN 59 + +IKW+N KGYGF+ D+F+H + GL ++ +G V + Sbjct: 115 LEAATIKWFNRTKGYGFVVR---GNDPTDIFIHIETLRRFGLEDIQQGDTLMVRF----- 166 Query: 60 DANGKYSAENLKLVPKS 76 G ++ PK+ Sbjct: 167 -GEGPKGLVVTEVQPKA 182 >gi|85813673|emb|CAG44466.1| putative cold shock protein [Streptomyces rimosus subsp. paromomycinus] Length = 76 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQND 60 + G +KW++ ++G G + G G DV +RSA+ LT G+ V+++ V++ Sbjct: 1 MPHGVVKWFDHERGAGLVAQTG---GGPDVLAYRSAIQGDEPARTLTTGERVSFNLVEDF 57 Query: 61 ANGKYSAENLKLVP 74 + AEN+ +P Sbjct: 58 EGIR--AENIYRLP 69 >gi|83749695|ref|ZP_00946674.1| Cold shock protein [Ralstonia solanacearum UW551] gi|83723620|gb|EAP70819.1| Cold shock protein [Ralstonia solanacearum UW551] Length = 82 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVF 32 + G++KW+N KG+GFITP+G G D+F Sbjct: 42 CMATGTVKWFNETKGFGFITPDG---GGADLF 70 >gi|114570048|ref|YP_756728.1| cold-shock DNA-binding protein family protein [Maricaulis maris MCS10] gi|114340510|gb|ABI65790.1| cold-shock DNA-binding protein family [Maricaulis maris MCS10] Length = 174 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ +GYGF+T + DVFLH + + AG ++ G + V+ G + Sbjct: 110 VKWFDALRGYGFVTCDNVE---GDVFLHAATLRRAGFEDIQPGDRIEVRCVEG-PKGALA 165 Query: 67 AE 68 AE Sbjct: 166 AE 167 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%) Query: 1 MVH-RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M+ G +KWY+P +GYGFI +++ D+ LH S + G + VQ Sbjct: 13 MLELEGRVKWYDPARGYGFI---DASDGEGDILLHASCLRRFGQGPALPNAKIVCKAVQG 69 Query: 60 DANGKYSAENLKL 72 D G+ + E +++ Sbjct: 70 D-KGRQAVELVEM 81 >gi|170728619|ref|YP_001762645.1| cold-shock DNA-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169813966|gb|ACA88550.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC 51908] Length = 206 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 12/58 (20%) Query: 2 VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA--------SAGLFNLTEGQ 50 + RG+ ++W N +KG+GFI PE +G DVF+H SA+ G+ LTE Q Sbjct: 1 MERGTLVRW-NDEKGFGFIKPETG--NGKDVFIHISALKHMARKPVIGDGILFLTEQQ 55 >gi|254293523|ref|YP_003059546.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] gi|254042054|gb|ACT58849.1| cold-shock DNA-binding domain protein [Hirschia baltica ATCC 49814] Length = 69 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K+YN ++G+G IT ++ DV SA+ G+ + E Q V ++ N Sbjct: 1 MIHGTVKYYNSEQGFGLITR---ADNEKDVRFTFSALKKLGITGIKERQKVKFETETNPD 57 Query: 62 NGKYSAENLKLV 73 GK A L+LV Sbjct: 58 TGKVIAVTLELV 69 >gi|213646239|ref|ZP_03376292.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 45 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 DVF+H SA+ S L E Q V + Q G + + L Sbjct: 1 GSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQG-PKGPSAVNVVAL 45 >gi|163746554|ref|ZP_02153912.1| cold shock protein [Oceanibulbus indolifex HEL-45] gi|161380439|gb|EDQ04850.1| cold shock protein [Oceanibulbus indolifex HEL-45] Length = 186 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++P KG+GF+ + G DV LH + + + G ++ +G +T Q D G Sbjct: 25 GVVKWFDPVKGFGFVVADA---GGSDVLLHVNVLRNFGQSSIADGARITIRVQQTD-RGA 80 Query: 65 YSAENLKLVPK 75 + E L + P Sbjct: 81 QAVEVLFIEPP 91 Score = 54.6 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G E DVFLH + +GL +L G+ + + D G Sbjct: 118 RVKWFDKAKGFGFANVFGRAE---DVFLHIDVLRQSGLCDLQPGEALAMRVIVGD-RGHL 173 Query: 66 SAEN 69 +AE Sbjct: 174 AAEV 177 >gi|222480397|ref|YP_002566634.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222453299|gb|ACM57564.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 64 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G + ++N GYGFI + + E DVF H V G +L EGQ V +D + + Sbjct: 1 MAKGKVDFFNDTGGYGFIESDDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEEAEK 54 Query: 62 NGKYSAENLKLV 73 + A N+ + Sbjct: 55 GPR--ATNVTRL 64 >gi|157873211|ref|XP_001685119.1| hypothetical protein [Leishmania major strain Friedlin] gi|68128190|emb|CAJ08321.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 461 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 46/118 (38%) Query: 2 VHRGSIKWYNPDKGYGFITP--------EGSTESGD------------------------ 29 ++ G +K YNP++G+GF+T +GS Sbjct: 334 LYEGFVKRYNPNRGFGFLTATTHVTVVNDGSNSDSATGTPIASLNNTTTAVPTTGEAETP 393 Query: 30 ----------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY--SAENLKLVPK 75 D+F+H+S++ G L G V + +G+ A N++L+P+ Sbjct: 394 KEYRTPVHLGDIFVHQSSMQMEGFRTLPVGGRVRFCI--GYKDGQQTLQAVNVELLPQ 449 >gi|222478487|ref|YP_002564724.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222451389|gb|ACM55654.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 64 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++N GYGFI + + + DVF H V +L EGQ + +D ++ Sbjct: 1 MATGKVDFFNDTGGYGFIETDDADD---DVFFHMEDVEG---PDLEEGQELEFDI-ESSP 53 Query: 62 NGKYSAENLK 71 G ++ ++ Sbjct: 54 KGPRASNVVR 63 >gi|323446578|gb|EGB02690.1| hypothetical protein AURANDRAFT_72835 [Aureococcus anophagefferens] Length = 411 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 7/65 (10%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +W ++G+GFI P+ + GDD+F H S + + G L+EG V + V ++ GK Sbjct: 249 CRW--NERGFGFIKPD---DGGDDLFCHVSQI-TDG-NALSEGATVHFVKVFDERRGKDR 301 Query: 67 AENLK 71 AE + Sbjct: 302 AEQVT 306 >gi|76802909|ref|YP_331004.1| cold shock protein [Natronomonas pharaonis DSM 2160] gi|76558774|emb|CAI50367.1| probable cold shock protein [Natronomonas pharaonis DSM 2160] Length = 64 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G + ++N GYGFI + S E DVF H + G +L EGQ V +D Q D Sbjct: 1 MAKGEVDFFNDTGGYGFIDTDESDE---DVFFHMEDI---GGPDLEEGQEVEFDIEQADK 54 Query: 62 NGKYSAENLKLV 73 + A+NL + Sbjct: 55 GPR--AKNLTRL 64 >gi|218196316|gb|EEC78743.1| hypothetical protein OsI_18955 [Oryza sativa Indica Group] Length = 66 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +KW++ KG+GFIT E + +D+F+ +S++ G ++ +G ++ D Sbjct: 2 VKWFDTTKGFGFITLE---DGSEDLFVRQSSLKFDGYQSINDGDVIDLSVGSGD 52 >gi|120612145|ref|YP_971823.1| cold-shock DNA-binding domain-containing protein [Acidovorax citrulli AAC00-1] gi|120590609|gb|ABM34049.1| cold-shock DNA-binding domain protein [Acidovorax citrulli AAC00-1] Length = 224 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G I +N +G+GFI P + GD VF+H A G GQ V + V+ Sbjct: 1 MQFDGVIASWNDARGFGFIEP---LQGGDPVFVHIKAFQG-GAPRPQAGQRVRF-AVEAG 55 Query: 61 ANGKYSAENLK 71 G+ A ++ Sbjct: 56 PGGRKRACRVE 66 >gi|149176013|ref|ZP_01854630.1| Cold-shock DNA-binding domain [Planctomyces maris DSM 8797] gi|148845167|gb|EDL59513.1| Cold-shock DNA-binding domain [Planctomyces maris DSM 8797] Length = 195 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G I ++ +KG+GFI+ S VF+H SA + + G V+Y+ + Sbjct: 1 MRSQGKITDWDDEKGFGFIS---SQNDDSSVFVHISAFSGSARR-PQAGDPVSYETAHEE 56 Query: 61 ANGKYSAENLKLVPKS 76 NGK AEN++ +S Sbjct: 57 -NGKVRAENVRFSDQS 71 >gi|169235137|ref|YP_001688337.1| cold shock protein [Halobacterium salinarum R1] gi|167726203|emb|CAP12980.1| putative cold shock protein [Halobacterium salinarum R1] Length = 64 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++N GYGFI E + E DVF H V G +L EGQ V +D Q D Sbjct: 1 MATGEVDFFNDTGGYGFIETEDADE---DVFFHMEDV---GGPDLEEGQEVEFDIEQADK 54 Query: 62 NGKYSAENLKLV 73 + A NL + Sbjct: 55 GPR--ATNLTRL 64 >gi|297668993|ref|XP_002812703.1| PREDICTED: protein lin-28 homolog A-like [Pongo abelii] Length = 254 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Query: 4 RGSIKWYNPDKGYGFI----TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 G KW+N G+G + + ++ DVF+H+S + +L EG+ V + + ++ Sbjct: 93 EGICKWFNLFMGFGLLYVTACTVVALDTPVDVFVHQSKLHMEDFRSLKEGEAVEFTFKKS 152 Query: 60 DAN 62 Sbjct: 153 AKG 155 >gi|54024530|ref|YP_118772.1| putative cold shock protein [Nocardia farcinica IFM 10152] gi|54016038|dbj|BAD57408.1| putative cold shock protein [Nocardia farcinica IFM 10152] Length = 130 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 ++ +G+GFI PE + G DVF+H + + L +G++ +D + D K A N Sbjct: 11 FDSSRGFGFIRPE---DGGPDVFVHVNDIGLD-EDELRQGRVFEFDVTEGDRGPK--AIN 64 Query: 70 LKLV 73 L V Sbjct: 65 LSAV 68 >gi|47216902|emb|CAG02074.1| unnamed protein product [Tetraodon nigroviridis] Length = 151 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G K ++ KG+GFITP ++ G D+F+H S + + EG V+Y Sbjct: 69 TGVCKCFSRSKGHGFITP---SDGGKDIFVHISDIEGE--YVPIEGDEVSYKI 116 >gi|149913750|ref|ZP_01902282.1| cold shock DNA-binding domain protein [Roseobacter sp. AzwK-3b] gi|149812034|gb|EDM71865.1| cold shock DNA-binding domain protein [Roseobacter sp. AzwK-3b] Length = 135 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G E DVF+H + +GL +L G+ + ++ G+ Sbjct: 65 RVKWFDKGKGFGFANTFGRDE---DVFVHVEVLRRSGLADLQPGEALAMRVIEG-KRGRM 120 Query: 66 SAEN 69 + E Sbjct: 121 ATEV 124 >gi|311740925|ref|ZP_07714752.1| cold-shock domain family protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311304445|gb|EFQ80521.1| cold-shock domain family protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 126 Score = 58.8 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF+ S +DV++ R+ V G+ L GQ + +D+ Sbjct: 1 MPIGKVKWYDAEKGFGFV----SNPGDEDVYVGRN-VLPKGVEELFPGQRIDFDFAAGRR 55 Query: 62 NGKYSAENLKLVPK 75 A +K++ K Sbjct: 56 G--PQALRVKVLDK 67 >gi|319408547|emb|CBI82200.1| cold shock protein [Bartonella schoenbuchensis R1] Length = 191 Score = 58.8 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI P+ D+ LH + + G EG + + + Sbjct: 28 GVIKWFDGSKGYGFIVPDLC--GLPDILLHVTVMRRDGFQTALEGAKIICVVKKTERG 83 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + R +KW++ DKG+GF++ + +D+F+H + GL L GQ+V + + + Sbjct: 117 LERAIVKWFDRDKGFGFLSR---GQGTEDIFIHMETLRRFGLAELRSGQVVIVRFGKGE- 172 Query: 62 NGKYSAE 68 G +AE Sbjct: 173 KGLMTAE 179 >gi|19552047|ref|NP_600049.1| cold shock protein [Corynebacterium glutamicum ATCC 13032] gi|145294989|ref|YP_001137810.1| hypothetical protein cgR_0934 [Corynebacterium glutamicum R] gi|21323586|dbj|BAB98213.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032] gi|140844909|dbj|BAF53908.1| hypothetical protein [Corynebacterium glutamicum R] Length = 127 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KWY+ ++G+GF+ S G+D F+ V G+ L +GQ + +D+ Sbjct: 1 MPVGTVKWYDAERGFGFV----SNPGGEDCFVG-KQVLPKGVTELHKGQRIDFDFA-AGR 54 Query: 62 NGKYS 66 G + Sbjct: 55 KGPQA 59 >gi|89076176|ref|ZP_01162533.1| Predicted membrane protein [Photobacterium sp. SKA34] gi|89048126|gb|EAR53711.1| Predicted membrane protein [Photobacterium sp. SKA34] Length = 204 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59 M +G I +N KG+GFI P+ DVF H SA+ ++ E VT+ + Sbjct: 1 MAQQGKIISWNQQKGFGFIAPD---NGEQDVFFHISALPDKQCRPHIDE--AVTFRIGK- 54 Query: 60 DANGKYSAENLK 71 D G+ SA + Sbjct: 55 DKKGRMSATTVT 66 >gi|255324986|ref|ZP_05366093.1| cold-shock DNA-binding domain protein [Corynebacterium tuberculostearicum SK141] gi|255297975|gb|EET77285.1| cold-shock DNA-binding domain protein [Corynebacterium tuberculostearicum SK141] Length = 126 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF+ S +DV++ R+ V G+ L GQ + +D+ Sbjct: 1 MPIGKVKWYDAEKGFGFV----SNAGDEDVYVGRN-VLPKGVEELFPGQRIDFDFAAGRR 55 Query: 62 NGKYSAENLKLVPK 75 A +K++ K Sbjct: 56 G--PQALRVKVLDK 67 >gi|162985|gb|AAA21677.1| transcription factor EF1(A) [Bos taurus] Length = 110 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 7/50 (14%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQ 50 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ Sbjct: 61 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGE 107 >gi|149203726|ref|ZP_01880695.1| cold shock DNA-binding domain protein [Roseovarius sp. TM1035] gi|149142843|gb|EDM30885.1| cold shock DNA-binding domain protein [Roseovarius sp. TM1035] Length = 177 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +KW++P KG+GF+ + E G D+ LH + + + G ++ + V D Q + G Sbjct: 12 KGRVKWFDPVKGFGFVIAD---EGGPDILLHPNVLRNFGQSSVADRAGVELDVQQTE-RG 67 Query: 64 KYSAENLKLVPK 75 + + + P Sbjct: 68 RQAVAVHTISPP 79 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G E DVF+H + +GL ++ G+ + + + G+ Sbjct: 107 RVKWFDKGKGFGFANTFGRDE---DVFVHIEVLRRSGLADVQPGEALAIRVI-DGKRGRM 162 Query: 66 SAEN 69 + E Sbjct: 163 ATEV 166 >gi|312887572|ref|ZP_07747166.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] gi|311299942|gb|EFQ77017.1| cold-shock DNA-binding protein family [Mucilaginibacter paludis DSM 18603] Length = 155 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++ ++N KG+GFI S ES +F+H A+ A + E VT++ Q G Sbjct: 90 KGTVTFFNESKGFGFIQDSVSQES---IFVHVKALEEA----IKENDKVTFETEQG-LKG 141 Query: 64 KYSAENLKLVPKS 76 + + K V +S Sbjct: 142 LSAIKVKKAVKES 154 >gi|86134369|ref|ZP_01052951.1| cold shock protein [Polaribacter sp. MED152] gi|85821232|gb|EAQ42379.1| cold shock protein [Polaribacter sp. MED152] Length = 63 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N KG+GF+ +GS F+H S + + + EG V +D + Sbjct: 1 MKNGTVKFFNESKGFGFVIEDGSKTE---YFVHVSGL----IDEIREGDAVEFDLKEGRK 53 Query: 62 NGKYSAENLKLV 73 +A +++++ Sbjct: 54 G--LNAVDVRVI 63 >gi|83942584|ref|ZP_00955045.1| cold shock DNA-binding domain protein [Sulfitobacter sp. EE-36] gi|83953825|ref|ZP_00962546.1| cold shock DNA-binding domain protein [Sulfitobacter sp. NAS-14.1] gi|83841770|gb|EAP80939.1| cold shock DNA-binding domain protein [Sulfitobacter sp. NAS-14.1] gi|83846677|gb|EAP84553.1| cold shock DNA-binding domain protein [Sulfitobacter sp. EE-36] Length = 169 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G ++ D+FLH + +GL +L G+ + + N G+ Sbjct: 94 RVKWFDKSKGFGFANVFGKSD---DIFLHIEVLRQSGLSDLQPGEALALRVI-NGERGQM 149 Query: 66 SAEN 69 +AE Sbjct: 150 AAEV 153 Score = 55.3 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++P KG+GF+ + G D+ LH + + + G ++ +G + VQ G + Sbjct: 2 VKWFDPAKGFGFVVSDA---GGPDILLHVNVLRNYGQSSVADGARIDL-TVQKTERGVQA 57 Query: 67 AENLKLVPKSS 77 + + P ++ Sbjct: 58 TQVHAVHPPAA 68 >gi|12862280|dbj|BAB32397.1| unnamed protein product [Mus musculus] gi|148685263|gb|EDL17210.1| mCG147570 [Mus musculus] Length = 199 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQND 60 G++K + GYGFI ++ +D+F+H++A+ L ++ +G+ +D V+ + Sbjct: 55 GTVKGFKVRNGYGFI---NRNDTKEDIFVHQTAIKKNNPRKYLRSVGDGETEEFDVVEGE 111 Query: 61 ANGKYSAEN 69 +G +A Sbjct: 112 -SGAEAANV 119 >gi|289643977|ref|ZP_06476078.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] gi|289506205|gb|EFD27203.1| cold-shock DNA-binding domain protein [Frankia symbiont of Datisca glomerata] Length = 146 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQN 59 MV G I ++ +GYGFI P+ GDD+F+H + + +L G LV ++ ++ Sbjct: 1 MVGTGRILRFDGVRGYGFIAPDA---GGDDIFMHANDLQDE--KHLFQPGTLVEFEAEES 55 Query: 60 DANGKYSAENLKLVPKSS 77 D K A ++L ++ Sbjct: 56 DRGPK--ASVVRLARRAQ 71 >gi|311748237|ref|ZP_07722022.1| cold shock protein [Algoriphagus sp. PR1] gi|126576729|gb|EAZ80977.1| cold shock protein [Algoriphagus sp. PR1] Length = 63 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K+YN KG+GFI + E+ D+F+H + + + + + VTYD ++ Sbjct: 1 MFTGTVKFYNDAKGFGFIVDD---ETQSDIFVHATGL----VDKVAQNDKVTYDI-KDGK 52 Query: 62 NGKYSAENLKL 72 G A N+K+ Sbjct: 53 KGPN-AINVKI 62 >gi|323166493|gb|EFZ52256.1| cold shock-like protein cspI [Shigella sonnei 53G] Length = 41 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 F+H SA+ G L EGQ V ++ Q+ G +A N+ + Sbjct: 2 FVHFSAIQGNGFKTLAEGQNVEFEI-QDGQKGP-AAVNVTAI 41 >gi|254488265|ref|ZP_05101470.1| cold shock protein [Roseobacter sp. GAI101] gi|214045134|gb|EEB85772.1| cold shock protein [Roseobacter sp. GAI101] Length = 182 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +KW++P KG+GF+ + E G D+ LH + + + G ++ +G + + Sbjct: 10 VTTGLVKWFDPAKGFGFVVSD---EGGPDILLHVNVLRNYGQSSVADGARIELTAHETQ- 65 Query: 62 NGKYSAENLKLVPKS 76 G + + + P Sbjct: 66 RGVQATQVHAIYPPQ 80 Score = 56.1 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G ++ D+FLH + +GL +L G+ + + + G Sbjct: 107 RVKWFDKSKGFGFANVFGRSD---DIFLHIEVLRQSGLSDLQPGEALALRVIMGE-RGHM 162 Query: 66 SAEN 69 +AE Sbjct: 163 AAEV 166 >gi|292654673|ref|YP_003534570.1| cold shock protein [Haloferax volcanii DS2] gi|17148925|gb|AAL35837.1|AF442116_1 conditioned medium-induced protein 9 [Haloferax volcanii] gi|291371479|gb|ADE03706.1| cold shock protein [Haloferax volcanii DS2] Length = 64 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G + ++N GYGFI+ + + + DVF H V G +L EGQ + +D Q Sbjct: 1 MAKGKVDFFNDTGGYGFISTDDADD---DVFFHMEDV---GGPDLEEGQEIEFDIEQAPK 54 Query: 62 NGKYSAENLKLV 73 + A N+ + Sbjct: 55 GPR--ATNVTRL 64 >gi|256545437|ref|ZP_05472799.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170] gi|256398833|gb|EEU12448.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170] Length = 68 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 8/72 (11%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQN 59 M G +K+++ KG+GFI E D F H S + S + G V +D Sbjct: 1 MKMEGKVKFFDNKKGFGFIESESG-----DYFFHYSEIISDKVYKTIENGARVEFDVKDF 55 Query: 60 DANGKYSAENLK 71 +A N+K Sbjct: 56 GRG--DTAFNVK 65 >gi|83951849|ref|ZP_00960581.1| cold shock DNA-binding domain protein [Roseovarius nubinhibens ISM] gi|83836855|gb|EAP76152.1| cold shock DNA-binding domain protein [Roseovarius nubinhibens ISM] Length = 129 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 IKW++ KG+GF G E DVF+H + +GL +L G+ + ++ G+ Sbjct: 57 RIKWFDKGKGFGFANTFGREE---DVFVHIEVLRRSGLADLQPGEALAIRVIEG-KRGRM 112 Query: 66 SAEN 69 + E Sbjct: 113 ATEV 116 >gi|330867254|gb|EGH01963.1| cold shock protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330876902|gb|EGH11051.1| cold shock protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330877324|gb|EGH11473.1| cold shock protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330957738|gb|EGH57998.1| cold shock protein [Pseudomonas syringae pv. maculicola str. ES4326] gi|330966551|gb|EGH66811.1| cold shock protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|330984849|gb|EGH82952.1| cold shock protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010117|gb|EGH90173.1| cold shock protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 45 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 SGDD+F+H A+ S G +L EGQ V++ + AE ++++ Sbjct: 1 SGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQKG--MQAEEVQVI 45 >gi|326318173|ref|YP_004235845.1| cold-shock DNA-binding domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375009|gb|ADX47278.1| cold-shock DNA-binding domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 224 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G I +N +G+GFI P + GD VF+H A G GQ V + V+ Sbjct: 1 MQFDGMIASWNDARGFGFIEP---LQGGDPVFVHIKAFQG-GASRPQAGQRVRF-AVEAG 55 Query: 61 ANGKYSAENLK 71 G+ A ++ Sbjct: 56 PGGRKRACRVE 66 >gi|296313742|ref|ZP_06863683.1| cold-shock DNA-binding domain protein [Neisseria polysaccharea ATCC 43768] gi|296839665|gb|EFH23603.1| cold-shock DNA-binding domain protein [Neisseria polysaccharea ATCC 43768] Length = 191 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW + +KGYGFI +G ++F H S + L E V+++ V +D G++ Sbjct: 6 VKW-DDEKGYGFIRIDG---GNKEIFCHISDFLQRNPRPGLDE--QVSFEVV-SDGKGRF 58 Query: 66 SAENLKLVPKS 76 SA+ ++ + + Sbjct: 59 SAKQIRYLNRE 69 >gi|42518906|ref|NP_964836.1| cold shock protein [Lactobacillus johnsonii NCC 533] gi|227889765|ref|ZP_04007570.1| cold-shock protein [Lactobacillus johnsonii ATCC 33200] gi|268319696|ref|YP_003293352.1| Cold shock protein B [Lactobacillus johnsonii FI9785] gi|41583192|gb|AAS08802.1| cold shock protein [Lactobacillus johnsonii NCC 533] gi|227849629|gb|EEJ59715.1| cold-shock protein [Lactobacillus johnsonii ATCC 33200] gi|262398071|emb|CAX67085.1| Cold shock protein B [Lactobacillus johnsonii FI9785] gi|329667548|gb|AEB93496.1| cold shock protein [Lactobacillus johnsonii DPC 6026] Length = 69 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K ++P+ YGFI + + S F+ ++ G L GQ V Y Q Sbjct: 1 MRKGTVKQFDPNSAYGFIEDDLTHSS---YFVFYKSIKEEGYKKLNVGQRVRYQLAQGKK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|86136205|ref|ZP_01054784.1| hypothetical protein MED193_18819 [Roseobacter sp. MED193] gi|85827079|gb|EAQ47275.1| hypothetical protein MED193_18819 [Roseobacter sp. MED193] Length = 463 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62 +G IK + DKG+GFI +G +E DVF H + V + + G++V +D ++ Sbjct: 2 QGKIKAFIHDKGFGFIEVDGQSE---DVFFHITTVKDSSVR-CAVGEIVDFDAAESKRKP 57 Query: 63 GKYSAENLKL 72 G A N++L Sbjct: 58 GTLEARNVRL 67 >gi|322370080|ref|ZP_08044642.1| cold shock protein [Haladaptatus paucihalophilus DX253] gi|320550416|gb|EFW92068.1| cold shock protein [Haladaptatus paucihalophilus DX253] Length = 64 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G + ++N GYGFI+ + + + DVF H V A +L EGQ + +D Q Sbjct: 1 MAKGKVDFFNDTGGYGFISTDDADD---DVFFHMEDVGGA---DLEEGQEIEFDIEQAPK 54 Query: 62 NGKYSAENLKLV 73 + A+N+ + Sbjct: 55 GPR--AKNVTRL 64 >gi|47206294|emb|CAF93182.1| unnamed protein product [Tetraodon nigroviridis] Length = 158 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G K ++ +G+GFI P + G+D+F+H S + + EG VTY + Sbjct: 75 KGVCKNFSRSQGHGFIRP---SNGGEDIFVHISDIEGE--YVPVEGDEVTYKVSRIPPKN 129 Query: 64 -KYSAENLKL 72 K A +K+ Sbjct: 130 LKVQAVEVKI 139 >gi|330507709|ref|YP_004384137.1| cold shock DNA binding domain-containing protein [Methanosaeta concilii GP-6] gi|328928517|gb|AEB68319.1| cold shock DNA binding domain protein [Methanosaeta concilii GP-6] Length = 64 Score = 58.0 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N K +GFI + G D F+H + + + EG V++D ++ + Sbjct: 1 MVDGTVKFFNRVKNFGFIAGD----DGKDYFVHVTGLKPG--VAIDEGDKVSFDVIEGEK 54 Query: 62 NGK 64 K Sbjct: 55 GPK 57 >gi|330893719|gb|EGH26380.1| cold shock domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 48 Score = 58.0 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 26 ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 +SGDD+F+H A+ S G +L EGQ VT+ VQ A+ ++ Sbjct: 2 QSGDDLFVHFKAIESDGFKSLKEGQKVTFVAVQGQKG--MQADEVQ 45 >gi|116629830|ref|YP_815002.1| cold shock protein [Lactobacillus gasseri ATCC 33323] gi|238853977|ref|ZP_04644334.1| conserved domain protein [Lactobacillus gasseri 202-4] gi|282851661|ref|ZP_06261026.1| cold-shock DNA-binding domain protein [Lactobacillus gasseri 224-1] gi|300361466|ref|ZP_07057643.1| cold-shock protein [Lactobacillus gasseri JV-V03] gi|311110528|ref|ZP_07711925.1| conserved domain protein [Lactobacillus gasseri MV-22] gi|116095412|gb|ABJ60564.1| cold-shock DNA-binding protein family [Lactobacillus gasseri ATCC 33323] gi|238833422|gb|EEQ25702.1| conserved domain protein [Lactobacillus gasseri 202-4] gi|282557629|gb|EFB63226.1| cold-shock DNA-binding domain protein [Lactobacillus gasseri 224-1] gi|300354085|gb|EFJ69956.1| cold-shock protein [Lactobacillus gasseri JV-V03] gi|311065682|gb|EFQ46022.1| conserved domain protein [Lactobacillus gasseri MV-22] Length = 69 Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++K ++ + YGFI + + S F+ ++ G L GQ V Y Q Sbjct: 1 MRKGTVKQFDSNSAYGFIEDDLTHSS---YFVFYKSIKEEGYKKLNVGQRVRYQLAQGKK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|289705444|ref|ZP_06501838.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58] gi|289557829|gb|EFD51126.1| cold-shock DNA-binding domain protein [Micrococcus luteus SK58] Length = 130 Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G IK+Y+ KG+GF T+ G++V + SA+ AG+ L G V + + Sbjct: 4 MPTGRIKFYDSTKGFGF----AQTDEGEEVHVPASAL-PAGVTELRGGTRVEFGVAEG-R 57 Query: 62 NGKYS 66 GK + Sbjct: 58 RGKQA 62 >gi|62389710|ref|YP_225112.1| cold shock protein [Corynebacterium glutamicum ATCC 13032] gi|41325045|emb|CAF19526.1| Cold shock protein [Corynebacterium glutamicum ATCC 13032] Length = 127 Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++KWY+ ++G+GF+ S G+D F+ V G+ L +GQ + +D+ Sbjct: 1 MPVGTVKWYDAERGFGFV----SNPGGEDCFVG-KQVLPKGVTELHKGQRIDFDFAAAGK 55 Query: 62 NGKYSAENLKLVP 74 A +K++ Sbjct: 56 G--PQALRIKILE 66 >gi|219130830|ref|XP_002185558.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402966|gb|EEC42923.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 297 Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 8/75 (10%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA----VASAGLFNL--TEGQLVTYDY 56 G +K+Y DKGYGFIT +G+ + D+FLHR+A V L + E + V++D Sbjct: 33 KTGKVKFYLRDKGYGFITADGAGDG--DIFLHRTAFVTHVPPEHLRHPFAREHERVSFDT 90 Query: 57 VQNDANGKYSAENLK 71 + ++G+ A N+ Sbjct: 91 QVDASSGQTRAVNVT 105 >gi|124003277|ref|ZP_01688127.1| conserved domain protein [Microscilla marina ATCC 23134] gi|123991375|gb|EAY30806.1| conserved domain protein [Microscilla marina ATCC 23134] Length = 64 Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G +K++ DKGYGFIT ++++G+D+F H S L E VTY+ + Sbjct: 1 MNKGVVKFFKEDKGYGFIT---NSDTGEDIFFHVSDTQDQ----LFENDNVTYE--ETRG 51 Query: 62 NGKYSAENLKL 72 A ++KL Sbjct: 52 KKGMQATDVKL 62 >gi|213512442|ref|NP_001133414.1| cold shock domain-containing protein C2 [Salmo salar] gi|209153912|gb|ACI33188.1| Cold shock domain-containing protein C2 [Salmo salar] Length = 159 Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G K + +G+GFI P T GDD+F+H S + + EG VTY + Sbjct: 72 KGVCKSFCRSQGHGFIRP---TNGGDDIFVHISDIEGE--YVPVEGDEVTYKVSRIPPKN 126 Query: 64 -KYSAENLKLV 73 K A +K+V Sbjct: 127 LKIQAVEVKIV 137 >gi|296133967|ref|YP_003641214.1| cold-shock DNA-binding domain protein [Thermincola sp. JR] gi|296032545|gb|ADG83313.1| cold-shock DNA-binding domain protein [Thermincola potens JR] Length = 714 Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+IK P+K +GFI + G+DVF S + A EG V ++ Q + Sbjct: 1 MTEGTIKKLFPEKQFGFIQLD---NDGEDVFFRFSLLKGA---KPYEGMRVGFEIEQGEK 54 Query: 62 NGKYSAENLKLVPKSSN 78 + A NL++V S Sbjct: 55 GPR--ARNLRIVEDGSK 69 >gi|298253963|ref|ZP_06977550.1| cold shock protein [Gardnerella vaginalis 5-1] gi|297532106|gb|EFH71081.1| cold shock protein [Gardnerella vaginalis 5-1] Length = 124 Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 WY+ KGYGFI + G DVFL +A+ + +L +G V + ++ + Sbjct: 3 WYDTQKGYGFIVGD----DGKDVFLPAAALPVT-VKSLHKGTRVEFSVIEGRKGPQAMGL 57 Query: 69 NL 70 N+ Sbjct: 58 NV 59 >gi|239916954|ref|YP_002956512.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC 2665] gi|281414588|ref|ZP_06246330.1| cold shock protein [Micrococcus luteus NCTC 2665] gi|239838161|gb|ACS29958.1| cold-shock DNA-binding protein family [Micrococcus luteus NCTC 2665] Length = 127 Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G IK+Y+ KG+GF T+ G++V + SA+ AG+ L G V + + Sbjct: 1 MPTGRIKFYDSTKGFGF----AQTDEGEEVHVPASAL-PAGVTELRGGTRVEFGVAEG-R 54 Query: 62 NGKYS 66 GK + Sbjct: 55 RGKQA 59 >gi|148284974|ref|YP_001249064.1| cold shock-like protein [Orientia tsutsugamushi str. Boryong] gi|189184097|ref|YP_001937882.1| cold shock protein [Orientia tsutsugamushi str. Ikeda] gi|146740413|emb|CAM80883.1| Cold shock-like protein [Orientia tsutsugamushi str. Boryong] gi|189180868|dbj|BAG40648.1| cold shock protein [Orientia tsutsugamushi str. Ikeda] Length = 73 Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 5/74 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESG---DDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + G +KWYN KGYGFI P + G +DVF+H +AV +AG+ +L EGQ V++ Sbjct: 1 MATGIVKWYNSVKGYGFIQPSEKVKDGGKMEDVFVHATAVVAAGVADLKEGQRVSFQI-- 58 Query: 59 NDANGKYSAENLKL 72 G+ A NL L Sbjct: 59 GSQKGRIYATNLVL 72 >gi|154340327|ref|XP_001566120.1| RNA binding protein rbp16 [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063439|emb|CAM39618.1| putative RNA binding protein rbp16 [Leishmania braziliensis MHOM/BR/75/M2904] Length = 143 Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58 +++ G + + +G+GFI + F+H SA+ + G L Q V ++ Sbjct: 16 LLNTGKVVSWMSGRGFGFIEDNADKKQH---FVHFSALQTETGGYRALAVDQEVEFEVA- 71 Query: 59 NDANGKYSAENLK 71 +G+ AEN+ Sbjct: 72 -SQDGRTRAENVT 83 >gi|163750506|ref|ZP_02157745.1| cold shock domain family protein [Shewanella benthica KT99] gi|161329827|gb|EDQ00815.1| cold shock domain family protein [Shewanella benthica KT99] Length = 198 Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 2 VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + +G ++W N DKG+GFI PE T +G DVF+H S + + G + Y Q Sbjct: 3 MEKGILVRWKN-DKGFGFIEPE--TANGKDVFIHISELKHMARKPIV-GDSIEYR-TQQQ 57 Query: 61 ANGKYSAENLKL 72 A+GK+ A N + Sbjct: 58 ADGKFKAINASI 69 >gi|223992615|ref|XP_002285991.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977306|gb|EED95632.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 50 Score = 57.3 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G++KWYN ++G+GFI + + G D+++H + + G L E + V + Sbjct: 2 TGTVKWYNAERGFGFIAID---DGGADMYVHATGLTFDG--PLIENERVGF 47 >gi|255513631|gb|EET89896.1| cold-shock DNA-binding domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 57 Score = 57.3 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +N ++G+GFIT E G D+++H +A+ G L G V Y+ Q + + Sbjct: 2 FNSERGFGFIT----GEDGKDIYVHSTAIE--GGATLAVGDAVEYEVEQAERGPRAK 52 >gi|149176125|ref|ZP_01854741.1| cold-shock DNA-binding domain protein [Planctomyces maris DSM 8797] gi|148844992|gb|EDL59339.1| cold-shock DNA-binding domain protein [Planctomyces maris DSM 8797] Length = 66 Score = 57.3 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G IK D+G+GFI E D+F H S V L L EGQ+V Y+ Q Sbjct: 1 MPQGKIKRIVSDRGFGFIEGERG-----DLFFHYSEVQGVTLEELQEGQMVEYEVGQGRK 55 Query: 62 NGKYSAENLKLV 73 A +K+V Sbjct: 56 G--PCATGVKVV 65 >gi|91794216|ref|YP_563867.1| hypothetical protein Sden_2865 [Shewanella denitrificans OS217] gi|91716218|gb|ABE56144.1| protein of unknown function DUF1294 [Shewanella denitrificans OS217] Length = 196 Score = 57.3 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 7/73 (9%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W + DKG+GFI P + G +VFLH SA+ +A E ++TY V Sbjct: 1 MRVKGKLVRW-DDDKGFGFIRPNLT---GPEVFLHISALRNASRR-PQEDDVITYALV-A 54 Query: 60 DANGKYSAENLKL 72 D G+ +A N L Sbjct: 55 DKQGRPTAANATL 67 >gi|308497192|ref|XP_003110783.1| CRE-CEY-4 protein [Caenorhabditis remanei] gi|308242663|gb|EFO86615.1| CRE-CEY-4 protein [Caenorhabditis remanei] Length = 289 Score = 57.3 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQ 58 G +KW++ YGF+ +++ +D F+H++A+A + L L + + V +D V+ Sbjct: 95 NGIVKWFSVRGRYGFVAR--ASDEKEDFFVHQTAIAKSSTIKYYLRTLDDEEPVVFDIVE 152 Query: 59 NDANGKYSAEN 69 G +A Sbjct: 153 G-RKGPEAANV 162 >gi|292656120|ref|YP_003536017.1| cold shock protein [Haloferax volcanii DS2] gi|291371726|gb|ADE03953.1| cold shock protein [Haloferax volcanii DS2] Length = 64 Score = 57.3 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI+ + + + DVF H + G +L EG V +D Q Sbjct: 1 MAKGNVDFFNDTGGYGFISTDDADD---DVFFHMEDI---GGPDLEEGTDVEFDIEQAPK 54 Query: 62 NGKYSAENLKLV 73 + A NL + Sbjct: 55 GPR--ATNLTRL 64 >gi|149176767|ref|ZP_01855378.1| probable cold shock protein scoF [Planctomyces maris DSM 8797] gi|148844408|gb|EDL58760.1| probable cold shock protein scoF [Planctomyces maris DSM 8797] Length = 65 Score = 57.3 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+IK KG+GFI TESG D+F H S + L EGQ V++ + + Sbjct: 1 MAEGTIKKV-TQKGFGFI----DTESGKDLFFHSSNLEGVSFEQLYEGQRVSFTEGRGEK 55 Query: 62 NGKYSAENLKLV 73 + AEN+K + Sbjct: 56 GPR--AENVKPI 65 >gi|213023272|ref|ZP_03337719.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213609835|ref|ZP_03369661.1| cold shock protein CspE [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 38 Score = 57.3 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 H SA+ + G L EGQ V ++ N A G +A L Sbjct: 1 HFSAIQTNGFKTLAEGQRVEFEIT-NGAKGPSAANVTAL 38 >gi|47226133|emb|CAG04507.1| unnamed protein product [Tetraodon nigroviridis] Length = 166 Score = 57.3 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K ++ +G+GFI P + G+D+F+H S + + EG VTY Sbjct: 81 VYKGVCKNFSRSQGHGFIRP---SHGGEDIFVHVSDIEGEYVPT--EGDEVTYKVCPIPP 135 Query: 61 ANGKYSAENLKL 72 N K+ A ++ + Sbjct: 136 KNQKFQAVDVVI 147 >gi|302865005|ref|YP_003833642.1| cold-shock protein [Micromonospora aurantiaca ATCC 27029] gi|302567864|gb|ADL44066.1| Cold-shock protein DNA-binding [Micromonospora aurantiaca ATCC 27029] Length = 123 Score = 57.3 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 7/68 (10%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KWY+ KGYGF+T ++ G DVFL + A+ AG+ +L GQ V + V + Sbjct: 1 MKWYDAAKGYGFVT----SDEGGDVFLPKGAL-PAGVADLKGGQRVDFSVVDSRRG--AQ 53 Query: 67 AENLKLVP 74 A +KL+ Sbjct: 54 AMGVKLLE 61 >gi|315501502|ref|YP_004080389.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] gi|315408121|gb|ADU06238.1| cold-shock DNA-binding domain protein [Micromonospora sp. L5] Length = 123 Score = 57.3 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 7/68 (10%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KWY+ KGYGF+T ++ G DVFL + A+ AG+ +L GQ V + V + Sbjct: 1 MKWYDAAKGYGFVT----SDEGGDVFLPKGAL-PAGVADLKGGQRVDFSVVDSRRG--AQ 53 Query: 67 AENLKLVP 74 A +KL+ Sbjct: 54 AMGVKLLE 61 >gi|306835559|ref|ZP_07468572.1| cold-shock domain family protein [Corynebacterium accolens ATCC 49726] gi|304568559|gb|EFM44111.1| cold-shock domain family protein [Corynebacterium accolens ATCC 49726] Length = 126 Score = 57.3 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF+ S +DV++ R+ V G+ + GQ + +D+ Sbjct: 1 MPIGKVKWYDAEKGFGFV----SNPGDEDVYVGRN-VLPQGVEEIFPGQRIEFDFAAGRR 55 Query: 62 NGKYSAENLKLVPK 75 A ++++ K Sbjct: 56 G--PQALRVRVLDK 67 >gi|227501406|ref|ZP_03931455.1| cold shock protein [Corynebacterium accolens ATCC 49725] gi|227077431|gb|EEI15394.1| cold shock protein [Corynebacterium accolens ATCC 49725] Length = 126 Score = 57.3 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KWY+ +KG+GF+ S +DV++ R+ V G+ + GQ + +D+ Sbjct: 1 MPIGKVKWYDAEKGFGFV----SNPGDEDVYVGRN-VLPKGVEEIFPGQRIEFDFAAGRR 55 Query: 62 NGKYSAENLKLVPK 75 A ++++ K Sbjct: 56 G--PQALRVRVLDK 67 >gi|313675263|ref|YP_004053259.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM 4126] gi|312941961|gb|ADR21151.1| cold-shock DNA-binding protein family [Marivirga tractuosa DSM 4126] Length = 63 Score = 56.9 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 7/61 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K++N DKG+GFI + + +F+H S + + + VT++ Sbjct: 1 MSTGTVKFFNEDKGFGFIIEDETENE---IFVHVSGLEDD----IEKNDKVTFETTDGKK 53 Query: 62 N 62 Sbjct: 54 G 54 >gi|110637372|ref|YP_677579.1| cold-shock DNA-binding protein family protein [Cytophaga hutchinsonii ATCC 33406] gi|110280053|gb|ABG58239.1| cold-shock DNA-binding protein family [Cytophaga hutchinsonii ATCC 33406] Length = 151 Score = 56.9 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V +G + ++N KGYGFI + ES +F+H + + + ++ E VT++ Sbjct: 88 VRKGIVTFFNDSKGYGFIKDMDTQES---IFVHINGL----VDSIKENNKVTFEVEMGPK 140 Query: 62 NGKYSAENLK 71 A L Sbjct: 141 GPNAVAVKLS 150 >gi|298209155|ref|YP_003717334.1| cold shock protein, putative DNA-binding protein [Croceibacter atlanticus HTCC2559] gi|83849082|gb|EAP86951.1| cold shock protein, putative DNA-binding protein [Croceibacter atlanticus HTCC2559] Length = 63 Score = 56.9 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K++N KG+GFIT +E+ ++ F+H S + + ++EG V +D ++ Sbjct: 1 MKNGRVKFFNDTKGFGFIT---DSETSEEYFVHVSGL----IDRISEGDHVAFDL-KDGK 52 Query: 62 NGKYSAENLKLV 73 G +A ++++V Sbjct: 53 KG-LNAIDVRVV 63 >gi|256842894|ref|ZP_05548382.1| cold shock protein [Lactobacillus crispatus 125-2-CHN] gi|256848732|ref|ZP_05554166.1| cold shock protein [Lactobacillus crispatus MV-1A-US] gi|293381728|ref|ZP_06627709.1| cold-shock DNA-binding domain protein [Lactobacillus crispatus 214-1] gi|295692698|ref|YP_003601308.1| cold shock protein [Lactobacillus crispatus ST1] gi|312977588|ref|ZP_07789335.1| conserved domain protein [Lactobacillus crispatus CTV-05] gi|256614314|gb|EEU19515.1| cold shock protein [Lactobacillus crispatus 125-2-CHN] gi|256714271|gb|EEU29258.1| cold shock protein [Lactobacillus crispatus MV-1A-US] gi|290921775|gb|EFD98796.1| cold-shock DNA-binding domain protein [Lactobacillus crispatus 214-1] gi|295030804|emb|CBL50283.1| Cold shock protein [Lactobacillus crispatus ST1] gi|310895327|gb|EFQ44394.1| conserved domain protein [Lactobacillus crispatus CTV-05] Length = 67 Score = 56.9 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K ++ YGFI + + +S F+ A+ G L GQ V Y Q Sbjct: 1 MRLGTVKQFDEGSSYGFIEDDRNHKS---YFVFYKAIKEEGYKTLQVGQRVKYQLAQGKN 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|323452578|gb|EGB08452.1| hypothetical protein AURANDRAFT_64076 [Aureococcus anophagefferens] Length = 1465 Score = 56.9 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 11/66 (16%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ W+N K +GF+ P+G G DVF+H S V L G V YD + G+ Sbjct: 1314 GTVLWFN--KSHGFVQPDG---GGADVFVHLSDVCG----VLKAGDRVLYDVTR--FKGR 1362 Query: 65 YSAENL 70 ++ Sbjct: 1363 DKCVDV 1368 >gi|114798263|ref|YP_760667.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114738437|gb|ABI76562.1| cold shock DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 175 Score = 56.9 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 5 GSIKWYNPDKGYGFITPEGSTESG--DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGFI E S+E+ DV LH S + G EG + D V+ + Sbjct: 23 GRIKWFDSAKGYGFIVAESSSEADMTGDVLLHISCLRDYGENYADEGAKIVCDAVRKERG 82 Query: 63 GKYS 66 + + Sbjct: 83 WQTA 86 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 ++KW+N +GYGF+ +G D+F+H A AG ++ G + ++ A G Sbjct: 112 TLKWFNRTRGYGFVLRDGQE---TDIFVHAVAFRKAGYEDIEPGTRIDV-IIEVGAKG 165 >gi|261327789|emb|CBH10766.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 505 Score = 56.9 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 38/112 (33%) Query: 3 HRGSIKWYNPDKGYGFITP-----------------EGSTESGD---------------- 29 + G +K YNP +G+GF+T +G+ + Sbjct: 215 YEGIVKRYNPMRGFGFLTATHHLQVTSPSGGSGTFSDGNADGRSRQQQQATPPQPTLERT 274 Query: 30 -----DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76 DVF+H+S + G L+ G V + + A +++L+ + Sbjct: 275 PVAVGDVFVHQSYIRMHGFRALSAGDRVAFRVGKLPGKDANQAVSVQLLATA 326 >gi|148673096|gb|EDL05043.1| lin-28 homolog B (C. elegans), isoform CRA_a [Mus musculus] Length = 233 Score = 56.9 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Query: 15 GYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G+GFI+ EG+ DVF+H+S + G +L EG+ V + + ++ Sbjct: 2 GFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSPKG 53 >gi|218676684|ref|YP_002395503.1| hypothetical protein VS_II0921 [Vibrio splendidus LGP32] gi|218324952|emb|CAV26780.1| Hypothetical protein VS_II0921 [Vibrio splendidus LGP32] Length = 81 Score = 56.9 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG I W++ + G+GF P+ DV +H S + G NL EGQ V + + Sbjct: 5 RGYITWFHLENGFGFAKPDHGDI---DVLIHISIIEFDGEINLEEGQRVYLELEEVKDKP 61 Query: 64 KYSAENLKLVP 74 ++A +K++P Sbjct: 62 HWNA--VKVLP 70 >gi|311899342|dbj|BAJ31750.1| hypothetical protein KSE_59800 [Kitasatospora setae KM-6054] Length = 344 Score = 56.9 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 10/75 (13%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59 + G + ++ +GYGFI P+ + G+DVFLH + + + + G V ++ Sbjct: 211 MVAGRVVRFDGSRGYGFIAPD---QGGEDVFLHVNDLLIPESYIRT---GLSVVFEIEDG 264 Query: 60 DANGKYSAENLKLVP 74 D K A +++L P Sbjct: 265 DRGPK--ASSVQLAP 277 >gi|295425124|ref|ZP_06817829.1| cold-shock protein [Lactobacillus amylolyticus DSM 11664] gi|295065183|gb|EFG56086.1| cold-shock protein [Lactobacillus amylolyticus DSM 11664] Length = 68 Score = 56.9 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K ++ YGFIT E + +S F+ +A+ G L GQ V Y Q Sbjct: 1 MRLGTVKQFDEGSSYGFITDEQNHKS---YFVFYTAIKEEGYKRLEVGQRVKYQLAQGKN 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|72388354|ref|XP_844601.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62360097|gb|AAX80518.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70801134|gb|AAZ11042.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 504 Score = 56.9 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 38/112 (33%) Query: 3 HRGSIKWYNPDKGYGFITP-----------------EGSTESGD---------------- 29 + G +K YNP +G+GF+T +G+ + Sbjct: 214 YEGIVKRYNPMRGFGFLTATHHLQVTSPSGGSGTFSDGNADGRSQQQQQTTPPQPTLERT 273 Query: 30 -----DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76 DVF+H+S + G L+ G V + + A +++L+ + Sbjct: 274 PVAVGDVFVHQSYIRMHGFRALSAGDRVAFRVGKLPGKDANQAVSVQLLATA 325 >gi|229085309|ref|ZP_04217551.1| Cold-shock DNA-binding domain protein [Bacillus cereus Rock3-44] gi|228698028|gb|EEL50771.1| Cold-shock DNA-binding domain protein [Bacillus cereus Rock3-44] Length = 83 Score = 56.9 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 10/79 (12%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA------SAGLFNLTEGQLVTYDY 56 + G ++W+ ++GYG I + + E VF+H S++A + L++GQ V++D Sbjct: 5 YEGIVEWFKKEEGYGSILLDRNKEEP--VFVHFSSIAPDLDRFPDNVRYLSKGQRVSFDL 62 Query: 57 VQNDANGKYS--AENLKLV 73 ++ + S A N+ ++ Sbjct: 63 IEIPGLSEQSKTASNVVIL 81 >gi|322500418|emb|CBZ35495.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 143 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58 +++ G + + +G+GFI F+H SA+ + G L Q V ++ Sbjct: 16 LLNTGKVVSWMSGRGFGFIEDNADKRQH---FVHFSALQTETGGYRALAVDQEVEFEVA- 71 Query: 59 NDANGKYSAENLK 71 +G+ AEN+ Sbjct: 72 -SQDGRTRAENVT 83 >gi|227877332|ref|ZP_03995405.1| cold-shock protein [Lactobacillus crispatus JV-V01] gi|227863188|gb|EEJ70634.1| cold-shock protein [Lactobacillus crispatus JV-V01] Length = 67 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K ++ YGFI + + +S F+ A+ G L GQ V Y Q Sbjct: 1 MRLGTVKQFDEGSSYGFIEDDRNHKS---YFVFYKAIKEEGYKTLQIGQRVKYQLAQGKN 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|327402091|ref|YP_004342929.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM 16823] gi|327317599|gb|AEA42091.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM 16823] Length = 148 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 8/65 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ +YN KGYGFI + SGD +F+H + + +TEG V+++ V+ Sbjct: 86 IRQGTVTFYNDSKGYGFI---KDSTSGDSIFVHANQLT----ETITEGNRVSFE-VEKGQ 137 Query: 62 NGKYS 66 G + Sbjct: 138 RGPTA 142 >gi|157871626|ref|XP_001684362.1| RNA binding protein rbp16 [Leishmania major strain Friedlin] gi|68127431|emb|CAJ05173.1| putative RNA binding protein rbp16 [Leishmania major strain Friedlin] Length = 142 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58 +++ G + + +G+GFI + F+H SA+ + G L Q V ++ Sbjct: 16 LLNTGKVVSWMSGRGFGFIEDNADKKQH---FVHFSALQTETGGYRALAVDQEVEFEVA- 71 Query: 59 NDANGKYSAENLK 71 +G+ AEN+ Sbjct: 72 -SQDGRTRAENVT 83 >gi|300709511|ref|YP_003735325.1| cold shock protein [Halalkalicoccus jeotgali B3] gi|299123194|gb|ADJ13533.1| cold shock protein [Halalkalicoccus jeotgali B3] Length = 64 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G + ++N GYGFI+ + + + DVF H V G +L EGQ + +D Q Sbjct: 1 MAKGEVDFFNDTGGYGFISTDDADD---DVFFHMEDV---GGPDLEEGQEIEFDIEQAPK 54 Query: 62 NGKYSAENLKLV 73 + A N+ + Sbjct: 55 GPR--ATNVTRL 64 >gi|117164652|emb|CAJ88198.1| putative DNA-binding protein [Streptomyces ambofaciens ATCC 23877] Length = 172 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G I ++ +GYGFI P+ G+DVF+H + +A L G V +D + D K Sbjct: 9 GKIIRFDEFRGYGFIAPD---NGGEDVFIHVNDLAFDK-RLLGPGMKVEFDVEEGDRGLK 64 Query: 65 YSAENLK 71 S ++ Sbjct: 65 ASRVRIQ 71 >gi|146091785|ref|XP_001470120.1| RNA binding protein rbp16 [Leishmania infantum] gi|134084914|emb|CAM69312.1| putative RNA binding protein rbp16 [Leishmania infantum JPCM5] Length = 143 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58 +++ G + + +G+GFI F+H SA+ + G L Q V ++ Sbjct: 16 LLNTGKVVSWMSGRGFGFIEDNADKRQH---FVHFSALQTETGGYRALAVDQEVEFEVA- 71 Query: 59 NDANGKYSAENLK 71 +G+ AEN+ Sbjct: 72 -SQDGRTRAENVT 83 >gi|289581524|ref|YP_003479990.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] gi|289531077|gb|ADD05428.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] Length = 64 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++N GYGFI+ + + + DVF H V G +L EGQ + +D Q Sbjct: 1 MANGNVDFFNDTGGYGFISTDDADD---DVFFHMEDV---GGPDLEEGQDIEFDIEQA-P 53 Query: 62 NGKYSAENLK 71 G + ++ Sbjct: 54 KGPRATNVVR 63 >gi|212697052|ref|ZP_03305180.1| hypothetical protein ANHYDRO_01617 [Anaerococcus hydrogenalis DSM 7454] gi|212675827|gb|EEB35434.1| hypothetical protein ANHYDRO_01617 [Anaerococcus hydrogenalis DSM 7454] Length = 68 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62 G +K+++ KG+GFI E D F H S + S + G V +D Sbjct: 2 EGKVKFFDEKKGFGFIESESG-----DYFFHYSEIISDKDYKTIENGARVEFDVKDLGRG 56 Query: 63 GKYSAENLK 71 +A N+K Sbjct: 57 --DTAFNVK 63 >gi|86145147|ref|ZP_01063478.1| hypothetical protein MED222_04500 [Vibrio sp. MED222] gi|85836724|gb|EAQ54844.1| hypothetical protein MED222_04500 [Vibrio sp. MED222] Length = 84 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG I W++ + G+GF P+ DV +H S + G N+ EGQ V + + G Sbjct: 8 RGYITWFHLENGFGFAKPDHGDI---DVLIHISVIEFDGEINVEEGQRVYMELEE--VKG 62 Query: 64 KYSAENLKLVP 74 K +K++P Sbjct: 63 KPHWNAVKVLP 73 >gi|322501459|emb|CBZ36538.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 535 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 46/118 (38%) Query: 2 VHRGSIKWYNPDKGYGFITP--------EGSTESG------------------------- 28 ++ G +K YNP++G+GF+T +GS Sbjct: 334 LYEGFVKRYNPNRGFGFLTATAHVTMVNDGSNSDSVTGTPIASLNATTTAVPTTREAETP 393 Query: 29 ---------DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY--SAENLKLVPK 75 D+F+H+S++ G L G V + +G+ A +++L+P+ Sbjct: 394 KEHRTPVHLGDIFVHQSSMQMEGFRTLPVGGRVRFRI--GYKDGQQTLQAVSVELLPQ 449 >gi|146094941|ref|XP_001467429.1| hypothetical protein [Leishmania infantum JPCM5] gi|134071794|emb|CAM70487.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 535 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 46/118 (38%) Query: 2 VHRGSIKWYNPDKGYGFITP--------EGSTESG------------------------- 28 ++ G +K YNP++G+GF+T +GS Sbjct: 334 LYEGFVKRYNPNRGFGFLTATAHVTMANDGSNSDSVTGTPIASLNATTTAVPTTREAETP 393 Query: 29 ---------DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY--SAENLKLVPK 75 D+F+H+S++ G L G V + +G+ A +++L+P+ Sbjct: 394 KEHRTPVHLGDIFVHQSSMQMEGFRTLPVGGRVRFRI--GYKDGQQTLQAVSVELLPQ 449 >gi|257386410|ref|YP_003176183.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] gi|257168717|gb|ACV46476.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] Length = 64 Score = 56.1 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++N GYGFI E + + DVF H V G +L EG V +D Q D Sbjct: 1 MANGTVDFFNDTGGYGFIETEDADD---DVFFHMEDV---GGPDLEEGTDVEFDIEQAD- 53 Query: 62 NGKYSAENLK 71 G + ++ Sbjct: 54 KGPRATNVVR 63 >gi|195428158|ref|XP_002062141.1| GK16809 [Drosophila willistoni] gi|194158226|gb|EDW73127.1| GK16809 [Drosophila willistoni] Length = 143 Score = 56.1 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K ++ KG+GFITP+ G+DVF H S + + G V Y Sbjct: 54 MVTGVVKSFSRTKGHGFITPQA---GGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPP 108 Query: 62 N-GKYSAENLKL 72 K+ A ++++ Sbjct: 109 KYEKHQAVHVQI 120 >gi|330448523|ref|ZP_08312171.1| 'Cold-shock' DNA-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492714|dbj|GAA06668.1| 'Cold-shock' DNA-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 204 Score = 56.1 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59 M +G I +N KG+GFI+P+ GDDVF H SA+A + E V + Sbjct: 1 MTQKGKIISWNQQKGFGFISPD---NGGDDVFFHVSALADKQSRPRIQE--PVNFKLG-T 54 Query: 60 DANGKYSAENLKLV 73 D+ G+ SA + V Sbjct: 55 DSKGRLSASKVTFV 68 >gi|194750622|ref|XP_001957629.1| GF23931 [Drosophila ananassae] gi|190624911|gb|EDV40435.1| GF23931 [Drosophila ananassae] Length = 142 Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K ++ KG+GFITP + G+DVF H S + + G V Y Sbjct: 54 MVTGVVKSFSRTKGHGFITP---SAGGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPP 108 Query: 62 N-GKYSAENLKL 72 K+ A ++++ Sbjct: 109 KYEKHQAVHVQI 120 >gi|327404743|ref|YP_004345581.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM 16823] gi|327320251|gb|AEA44743.1| cold-shock DNA-binding protein family [Fluviicola taffensis DSM 16823] Length = 63 Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 9/70 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G+IK++N KG+GF+ + E+ + F+H S + + + E VT+D + Sbjct: 1 MNKGTIKFFNETKGFGFVKED---ETNKEYFVHVSGL----VDKVNENDAVTFDLEEGRK 53 Query: 62 NGKYSAENLK 71 A N+K Sbjct: 54 G--LMAVNVK 61 >gi|154342412|ref|XP_001567154.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064483|emb|CAM42577.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 525 Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 43/115 (37%) Query: 2 VHRGSIKWYNPDKGYGFIT------------------------------PEGSTESGD-- 29 V+ G +K YNP++G+GF+T P E+ + Sbjct: 331 VYEGFVKRYNPNRGFGFLTATTHVTVSANGDSATGTPPTSLSAPATAVPPTAEAEAPEKR 390 Query: 30 -------DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY--SAENLKLVPK 75 D+F+H+S++ G L G V + +G+ A +++L+P+ Sbjct: 391 RTPVHLGDIFVHQSSMQMEGFRALPVGGRVRFRI--GYKDGQQTLQAVDVELLPQ 443 >gi|195127535|ref|XP_002008224.1| GI13370 [Drosophila mojavensis] gi|193919833|gb|EDW18700.1| GI13370 [Drosophila mojavensis] Length = 142 Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K ++ KG+GFITP + G+DVF H S + + G V Y Sbjct: 54 MVAGVVKSFSRTKGHGFITPH---DGGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPP 108 Query: 62 N-GKYSAENLKL 72 K+ A ++++ Sbjct: 109 KFEKHQAVHVQI 120 >gi|87307223|ref|ZP_01089368.1| probable cold shock protein scoF [Blastopirellula marina DSM 3645] gi|87289963|gb|EAQ81852.1| probable cold shock protein scoF [Blastopirellula marina DSM 3645] Length = 68 Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G IK DKG+GFI T S D+F H S++ +L EGQ V+Y Q Sbjct: 3 LMPEGKIKRL-TDKGFGFI----DTGSNKDLFFHMSSLEGCRYDDLREGQTVSYVEGQGP 57 Query: 61 ANGKYSAENLKLV 73 + AE ++++ Sbjct: 58 KGPR--AEQVQVI 68 >gi|238752131|ref|ZP_04613613.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380] gi|238709604|gb|EEQ01840.1| Cold shock-like protein cspI [Yersinia rohdei ATCC 43380] Length = 41 Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 F+H SA+ S L EGQ V + ++ A G + + L Sbjct: 2 FVHFSAIQSNDFKTLDEGQKVEFSI-ESGAKGPAAVNVIAL 41 >gi|327280107|ref|XP_003224795.1| PREDICTED: calcium-regulated heat stable protein 1-like [Anolis carolinensis] Length = 149 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41 ++G K ++ KG+GFITPE E G DVF+H S + Sbjct: 63 YKGVCKCFSRAKGHGFITPE---EGGLDVFVHISDIEGE 98 >gi|322493163|emb|CBZ28448.1| putative RNA binding protein rbp16 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 142 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA--GLFNLTEGQLVTYDYVQ 58 +++ G + + +G+GFI F+H SA+ + G L Q V ++ Sbjct: 16 LLNTGKVVSWMSGRGFGFIEDNADKRQH---FVHFSALQTETGGYRALAVDQEVEFEVA- 71 Query: 59 NDANGKYSAENLK 71 +G+ AEN+ Sbjct: 72 -SQDGRTRAENVT 83 >gi|119776235|ref|YP_928975.1| cold-shock DNA-binding domain-containing protein [Shewanella amazonensis SB2B] gi|119768735|gb|ABM01306.1| cold-shock DNA-binding protein family [Shewanella amazonensis SB2B] Length = 186 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60 + RG + +N ++G+GFI PE + DDVF+H S++ + G ++ + Q Sbjct: 1 MQRGKLIRWNDERGFGFIKPE--QDGADDVFIHISSLKQMS--RAPRIGDIIVFQL-QTS 55 Query: 61 ANGKYSA 67 ++GK A Sbjct: 56 SDGKQQA 62 >gi|209735380|gb|ACI68559.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|209738580|gb|ACI70159.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] Length = 111 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41 G++KW+N GYGFI ++ +DVF+H++A+ Sbjct: 41 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKN 74 >gi|288961931|ref|YP_003452241.1| cold-shock DNA-binding domain protein [Azospirillum sp. B510] gi|288914211|dbj|BAI75697.1| cold-shock DNA-binding domain protein [Azospirillum sp. B510] Length = 204 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 ++KW+ P+KG+GF+ + + FLH S +A+A L N EG V D Q Sbjct: 10 TATVKWFKPEKGFGFV---RLADGSGEAFLHASVLAAASLPNPVEGTTVVCDLAQGAKGP 66 Query: 64 KYSA 67 + A Sbjct: 67 QVVA 70 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+++WYN D G I P E G V+ R+ + +GL + +G+ V Y V ++ Sbjct: 138 MAYGTVRWYNLDSQSGLIEP---WEDGATVYFDRATLRQSGLDIVADGEDVRYLAVGSED 194 Query: 62 NGKYSAENLKLV 73 A+ ++L+ Sbjct: 195 A--PVAQRVELI 204 >gi|317419174|emb|CBN81211.1| Cold shock domain-containing protein C2 [Dicentrarchus labrax] Length = 157 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFI P + G+D+F+H S + + EG VTY N Sbjct: 74 KGVCKNFSRSQGHGFIRP---SHGGEDIFVHISDIEGE--YVPMEGDEVTYKVCPIPPKN 128 Query: 63 GKYSAENLKL 72 K A ++ + Sbjct: 129 QKIQAVDVVI 138 >gi|330867693|gb|EGH02402.1| cold shock protein CapA [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330876782|gb|EGH10931.1| cold shock protein CapA [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330883225|gb|EGH17374.1| cold shock protein CapA [Pseudomonas syringae pv. glycinea str. race 4] gi|330958900|gb|EGH59160.1| cold shock protein CapA [Pseudomonas syringae pv. maculicola str. ES4326] gi|330967300|gb|EGH67560.1| cold shock protein CapA [Pseudomonas syringae pv. actinidiae str. M302091] gi|330989243|gb|EGH87346.1| cold shock protein CapA [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010504|gb|EGH90560.1| cold shock protein CapA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 46 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 GDD+F+H A+ S G +L EGQ V++ + AE +++ Sbjct: 2 GGDDLFVHFKAIESDGFKSLKEGQTVSFVAAKGQKG--MQAEQVRV 45 >gi|182678527|ref|YP_001832673.1| cold-shock DNA-binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634410|gb|ACB95184.1| cold-shock DNA-binding domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 205 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +KW+N KG+GF++ + +D+F+H + G+ L G+ + + Q Sbjct: 135 KVKWFNRVKGFGFLSR---GDGTEDIFVHMEILRRHGISILHPGEELRARFGQGPKG 188 Score = 54.2 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G IKW++ KGYGF+ + DV LH +A+ G EG V + ++ Sbjct: 35 GRIKWFDLVKGYGFVVAD---NGLGDVLLHVTALRKDGHSKACEGARVVCEAMRGTKG 89 >gi|145284606|gb|ABP52050.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 27 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KG+GFI PE GDDVF+H Sbjct: 1 GRVKWFNNAKGFGFICPES---GGDDVFVH 27 >gi|288941832|ref|YP_003444072.1| cold-shock DNA-binding domain-containing protein [Allochromatium vinosum DSM 180] gi|288897204|gb|ADC63040.1| cold-shock DNA-binding domain protein [Allochromatium vinosum DSM 180] Length = 264 Score = 55.3 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%) Query: 2 VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40 + G+ ++W + KG+GFI P + G DVF+H SA+ Sbjct: 10 LREGTLVRW-DDAKGFGFIRP---NDGGKDVFVHISALPM 45 >gi|224070003|ref|XP_002194726.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 152 Score = 55.3 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 +++G K + KG+GFITP + G D+F+H S + + G VTY Sbjct: 67 IYKGVCKCFCRSKGHGFITP---ADGGPDIFVHISDIEGE--YVPVAGDEVTYKMCTIPP 121 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 122 KNEKLQAVEVVI 133 >gi|114046090|ref|YP_736640.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-7] gi|113887532|gb|ABI41583.1| cold-shock DNA-binding protein family [Shewanella sp. MR-7] Length = 197 Score = 55.3 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%) Query: 2 VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + RG ++W N +KG+GFI PE S G DVF+H + + L G + Y + Sbjct: 1 MERGILVRW-NDEKGFGFIQPEDSK--GKDVFIHITVLKHMARKPLV-GDSILYR-TEIQ 55 Query: 61 ANGKYSA 67 +GK A Sbjct: 56 NDGKVKA 62 >gi|85703578|ref|ZP_01034682.1| cold shock DNA-binding domain protein [Roseovarius sp. 217] gi|85672506|gb|EAQ27363.1| cold shock DNA-binding domain protein [Roseovarius sp. 217] Length = 151 Score = 55.3 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G E DVF+H + +GL ++ G+ + + + G+ Sbjct: 81 RVKWFDKGKGFGFANTFGREE---DVFVHVEVLRRSGLADVQPGEALAIRVI-DGKRGRM 136 Query: 66 SAEN 69 + E Sbjct: 137 ATEV 140 >gi|109898941|ref|YP_662196.1| cold-shock DNA-binding domain-containing protein [Pseudoalteromonas atlantica T6c] gi|109701222|gb|ABG41142.1| cold-shock DNA-binding domain protein [Pseudoalteromonas atlantica T6c] Length = 237 Score = 55.3 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G + +N DKG+GF+ P G G+ VF+H A +G ++TY+ V+ Sbjct: 1 MRFQGKVFNWNDDKGFGFVEPNG---GGERVFVHIKAFTPRSRR-PVDGDVITYELVRES 56 Query: 61 ANGKYSAENLK 71 N + AEN++ Sbjct: 57 HN-RCKAENIQ 66 >gi|50540448|ref|NP_001002690.1| cold shock domain-containing protein C2 [Danio rerio] gi|49903205|gb|AAH76447.1| Cold shock domain containing C2, RNA binding [Danio rerio] gi|182891632|gb|AAI64903.1| Csdc2 protein [Danio rerio] Length = 153 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V++G K ++ +G+GFI P + G+D+F+H S + + EG VTY Sbjct: 68 VYKGICKNFSRSQGHGFIRP---SHGGEDIFVHISDIEGE--YVPMEGDEVTYKVCPVPP 122 Query: 62 NG-KYSAENLKLVPKSS 77 K+ A + + SS Sbjct: 123 KNIKFQAVEVVITNLSS 139 >gi|212636761|ref|YP_002313286.1| hypothetical protein swp_4029 [Shewanella piezotolerans WP3] gi|212558245|gb|ACJ30699.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 251 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 1 MVHRG-SIKWYNPDKGYGFI--TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 M+ +G ++W N KGYGFI +GS ++ DVF+H SA+ G G +V + Sbjct: 1 MIKKGQIVRW-NDSKGYGFIRCEVQGSEQATQDVFMHMSALEPMGRR-PQVGDVVDFQI- 57 Query: 58 QNDANGKYSA 67 + A+GK A Sbjct: 58 EVQADGKQRA 67 >gi|28201200|dbj|BAC56735.1| cold shock protein [Janthinobacterium sp. J3] Length = 174 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G + +N ++G+GFI G++E FLH SA+ L G LVTY+ + D Sbjct: 1 MRLQGRVIEWNDERGFGFIIQNGTSERT---FLHISALRKTKGRPLL-GSLVTYEI-RRD 55 Query: 61 ANGKYSAENLKLVPKSS 77 G+ A +L+ S Sbjct: 56 DKGRLQAVAAELIGTKS 72 >gi|315038058|ref|YP_004031626.1| cold shock protein [Lactobacillus amylovorus GRL 1112] gi|325956510|ref|YP_004291922.1| cold shock protein [Lactobacillus acidophilus 30SC] gi|312276191|gb|ADQ58831.1| cold shock protein [Lactobacillus amylovorus GRL 1112] gi|325333075|gb|ADZ06983.1| cold shock protein [Lactobacillus acidophilus 30SC] gi|327183338|gb|AEA31785.1| cold shock protein [Lactobacillus amylovorus GRL 1118] Length = 67 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K ++ YGFI + + +S F+ A+ G L G V Y Q Sbjct: 1 MRLGTVKQFDDGSSYGFIEDDKNHKS---YFVFYKAIKEEGYKTLKVGDRVKYQLAQGKN 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|55379499|ref|YP_137349.1| cold shock protein [Haloarcula marismortui ATCC 43049] gi|55232224|gb|AAV47643.1| cold shock protein [Haloarcula marismortui ATCC 43049] Length = 64 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++N GYGFI+ E + + DVF H V G +L EG+ + +D Q D Sbjct: 1 MANGKVDFFNDTGGYGFISTEDADD---DVFFHMEDV---GGPDLEEGEEIEFDIEQAD- 53 Query: 62 NGKYSAENLK 71 G + ++ Sbjct: 54 KGPRATNVVR 63 >gi|16125636|ref|NP_420200.1| cold-shock domain-contain protein [Caulobacter crescentus CB15] gi|13422744|gb|AAK23368.1| cold-shock domain family protein [Caulobacter crescentus CB15] Length = 64 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW+N KGYGF+ + D+F+H + GL +L G V + + G Sbjct: 1 MKWFNRTKGYGFVIRDAEP---GDIFVHIETLRRGGLEDLQPGDDVLVRFARG-PKGLVV 56 Query: 67 AE 68 AE Sbjct: 57 AE 58 >gi|161507323|ref|YP_001577277.1| cold shock protein [Lactobacillus helveticus DPC 4571] gi|260102620|ref|ZP_05752857.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|160348312|gb|ABX26986.1| Cold shock protein [Lactobacillus helveticus DPC 4571] gi|260083574|gb|EEW67694.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|323466795|gb|ADX70482.1| Cold shock protein [Lactobacillus helveticus H10] gi|328468654|gb|EGF39648.1| cold shock protein [Lactobacillus helveticus MTCC 5463] Length = 67 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K ++ YGFI + + +S F+ A+ G +L G V Y Q Sbjct: 1 MRLGTVKQFDEGSSYGFIEDDRNHKS---YFVFYKAIKEEGYKSLRVGDRVQYQLAQGKN 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|37520057|ref|NP_923434.1| hypothetical protein gsr0488 [Gloeobacter violaceus PCC 7421] gi|35211049|dbj|BAC88429.1| gsr0488 [Gloeobacter violaceus PCC 7421] Length = 65 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 5/65 (7%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 ++W++ GYG I + ++G++VFL +A+ G + V ++ Q + Sbjct: 2 VRWFDLQAGYGAIARD---DTGEEVFLLFTAIPGEGYRTIAPSTAVHFELAQGPSG--PV 56 Query: 67 AENLK 71 A N++ Sbjct: 57 ARNVQ 61 >gi|259501538|ref|ZP_05744440.1| cold shock domain family protein [Lactobacillus iners DSM 13335] gi|302191488|ref|ZP_07267742.1| cold shock protein [Lactobacillus iners AB-1] gi|309804239|ref|ZP_07698316.1| cold shock-like protein CspG [Lactobacillus iners LactinV 11V1-d] gi|309805465|ref|ZP_07699510.1| cold shock-like protein CspG [Lactobacillus iners LactinV 09V1-c] gi|309806572|ref|ZP_07700572.1| cold shock-like protein CspG [Lactobacillus iners LactinV 03V1-b] gi|309808598|ref|ZP_07702490.1| cold shock-like protein CspG [Lactobacillus iners LactinV 01V1-a] gi|309809513|ref|ZP_07703371.1| cold shock-like protein CspG [Lactobacillus iners SPIN 2503V10-D] gi|312871855|ref|ZP_07731939.1| cold shock-like protein CspG [Lactobacillus iners LEAF 3008A-a] gi|312872457|ref|ZP_07732526.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2062A-h1] gi|312874456|ref|ZP_07734486.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2052A-d] gi|312874558|ref|ZP_07734583.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2053A-b] gi|315653382|ref|ZP_07906304.1| cold shock domain family protein [Lactobacillus iners ATCC 55195] gi|325911790|ref|ZP_08174194.1| cold shock-like protein CspG [Lactobacillus iners UPII 143-D] gi|325913429|ref|ZP_08175795.1| cold shock-like protein CspG [Lactobacillus iners UPII 60-B] gi|329921167|ref|ZP_08277689.1| cold shock-like protein CspG [Lactobacillus iners SPIN 1401G] gi|259167056|gb|EEW51551.1| cold shock domain family protein [Lactobacillus iners DSM 13335] gi|308163642|gb|EFO65912.1| cold shock-like protein CspG [Lactobacillus iners LactinV 11V1-d] gi|308165116|gb|EFO67354.1| cold shock-like protein CspG [Lactobacillus iners LactinV 09V1-c] gi|308167051|gb|EFO69230.1| cold shock-like protein CspG [Lactobacillus iners LactinV 03V1-b] gi|308168072|gb|EFO70198.1| cold shock-like protein CspG [Lactobacillus iners LactinV 01V1-a] gi|308170185|gb|EFO72220.1| cold shock-like protein CspG [Lactobacillus iners SPIN 2503V10-D] gi|311089949|gb|EFQ48368.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2053A-b] gi|311090068|gb|EFQ48482.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2052A-d] gi|311092039|gb|EFQ50414.1| cold shock-like protein CspG [Lactobacillus iners LEAF 2062A-h1] gi|311092577|gb|EFQ50937.1| cold shock-like protein CspG [Lactobacillus iners LEAF 3008A-a] gi|315489307|gb|EFU78947.1| cold shock domain family protein [Lactobacillus iners ATCC 55195] gi|325476296|gb|EGC79458.1| cold shock-like protein CspG [Lactobacillus iners UPII 143-D] gi|325477198|gb|EGC80344.1| cold shock-like protein CspG [Lactobacillus iners UPII 60-B] gi|328934805|gb|EGG31296.1| cold shock-like protein CspG [Lactobacillus iners SPIN 1401G] Length = 72 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K ++ YGFI + + G F+ ++ +G L GQ V Y Q Sbjct: 1 MRTGIVKQFDSRSPYGFIEDDLT---GASYFVFYKSIKESGYKRLEVGQRVRYQLAQGKK 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|32473251|ref|NP_866245.1| cold shock protein scoF [Rhodopirellula baltica SH 1] gi|32397930|emb|CAD73931.1| probable cold shock protein scoF [Rhodopirellula baltica SH 1] gi|327540425|gb|EGF27010.1| Cold shock, CspA [Rhodopirellula baltica WH47] Length = 65 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+IK DKG+GFI T D+F H + V A L EGQ VTY + Sbjct: 1 MAEGTIKRL-TDKGFGFI----DTGGPKDLFFHCTNVEGASYDELQEGQKVTY--TEGRG 53 Query: 62 NGKYSAENLK 71 AEN+ Sbjct: 54 PKGPCAENVT 63 >gi|86740653|ref|YP_481053.1| cold-shock DNA-binding protein family protein [Frankia sp. CcI3] gi|86567515|gb|ABD11324.1| cold-shock DNA-binding protein family [Frankia sp. CcI3] Length = 141 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 7/78 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT-EGQLVTYDYVQND 60 + G + ++ +GYGFI P ++ GDD+FLH + + NL G ++ ++ + + Sbjct: 1 MSTGKVLRFDHVRGYGFIAP---SDGGDDIFLHANDLLVE--KNLVIPGAVMEFEIEEGE 55 Query: 61 ANGK-YSAENLKLVPKSS 77 K +A L+ P +S Sbjct: 56 RGLKASAARILRSAPAAS 73 >gi|296140435|ref|YP_003647678.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola DSM 20162] gi|296028569|gb|ADG79339.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola DSM 20162] Length = 152 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++ +G+GF+ P + G+DVFLH + + L G VT+D + D Sbjct: 1 MTSGKVVHFDTQRGFGFLAP---ADGGEDVFLHVNDIDFD-ESALRPGTEVTFDVEKGDK 56 Query: 62 NGKYSAEN 69 A N Sbjct: 57 G--LKAVN 62 >gi|17547421|ref|NP_520823.1| cold shock-like transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17429724|emb|CAD16409.1| probable cold shock-like transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 54 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 20 TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 + G+D+F H S + G+ +L EGQ V Y V NG + Sbjct: 3 CNDSPDTGGNDLFAHFSEIQGNGVKSLQEGQKVHY-VVGVGQNGPTA 48 >gi|307823633|ref|ZP_07653862.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307735618|gb|EFO06466.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 107 Score = 55.0 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G +K + D+G+GFI+P+ + G D+F+H SA+ +T G ++ Y +++ Sbjct: 1 MIKGVLKTWKEDRGFGFISPD---DGGKDIFIHISALKGTSRRPVT-GDVIYYQVARDN- 55 Query: 62 NGKYSAEN 69 GKY A N Sbjct: 56 RGKYKAIN 63 >gi|154147690|ref|NP_001093718.1| cold shock domain containing C2, RNA binding [Xenopus (Silurana) tropicalis] gi|134025813|gb|AAI35982.1| csdc2 protein [Xenopus (Silurana) tropicalis] Length = 151 Score = 55.0 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 +++G K ++ +G+GFITPE TE D+F+H S + + EG VT+ Sbjct: 66 IYKGVCKQFSRSQGHGFITPENGTE---DIFVHISDIEGE--YVPVEGDEVTFKMCPIPP 120 Query: 61 ANGKYSAENL 70 N K+ A + Sbjct: 121 KNQKFQAVEV 130 >gi|313125894|ref|YP_004036164.1| cold-shock DNA-binding protein family [Halogeometricum borinquense DSM 11551] gi|312292259|gb|ADQ66719.1| cold-shock DNA-binding protein family [Halogeometricum borinquense DSM 11551] Length = 64 Score = 55.0 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 7/71 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI+ + + + DVF H + G +L EG V ++ ++ Sbjct: 1 MAKGNVDFFNDTGGYGFISTDDADD---DVFFHMEDI---GGEDLEEGTDVEFEI-EDAP 53 Query: 62 NGKYSAENLKL 72 G + +L Sbjct: 54 KGPRATNLTRL 64 >gi|289581096|ref|YP_003479562.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] gi|289530649|gb|ADD05000.1| cold-shock DNA-binding domain protein [Natrialba magadii ATCC 43099] Length = 64 Score = 55.0 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++N GYGFI E + + DVF H V G +LTEG + +D Q Sbjct: 1 MANGTVDFFNDTGGYGFIETEDADD---DVFFHMEDV---GGEDLTEGTEIEFDIEQA-P 53 Query: 62 NGKYSAENLK 71 G + ++ Sbjct: 54 KGPRATNVVR 63 >gi|195014627|ref|XP_001984048.1| GH16224 [Drosophila grimshawi] gi|193897530|gb|EDV96396.1| GH16224 [Drosophila grimshawi] Length = 142 Score = 55.0 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 5/50 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 G +K ++ KG+GFITP G G+DVF H S + + EG V Y Sbjct: 57 GVVKSFSRTKGHGFITPNG---GGEDVFCHVSDIEGE--YVPMEGDEVKY 101 >gi|227893345|ref|ZP_04011150.1| cold-shock protein [Lactobacillus ultunensis DSM 16047] gi|227864760|gb|EEJ72181.1| cold-shock protein [Lactobacillus ultunensis DSM 16047] Length = 67 Score = 55.0 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K ++ YGFI + + +S F+ A+ G L G V Y Q Sbjct: 1 MRLGTVKQFDEGSSYGFIEDDQNHKS---YFVFYKAIKEEGYKTLRVGDRVKYQLAQGKN 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|257387381|ref|YP_003177154.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] gi|257169688|gb|ACV47447.1| cold-shock DNA-binding domain protein [Halomicrobium mukohataei DSM 12286] Length = 64 Score = 55.0 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++N GYGFI E + + DVF H V G +L EG V +D Q D Sbjct: 1 MANGTVDFFNDTGGYGFIETEDADD---DVFFHMEDV---GGPDLEEGTDVDFDIEQAD- 53 Query: 62 NGKYSAENLK 71 G + ++ Sbjct: 54 KGPRATNVVR 63 >gi|316967791|gb|EFV52174.1| DNA-binding protein A [Trichinella spiralis] Length = 377 Score = 55.0 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 54/116 (46%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHR--------------SAVASAG------- 42 +G +KW+N GYGFI ++G+D+F+H+ +A+ G Sbjct: 122 KGKVKWFNVKNGYGFI---NRLDTGEDIFVHQVSCSSESLFVCRRRNALVRLGLPAGDGT 178 Query: 43 -----------------------------LFNLTEGQLVTYDYVQNDANGKYSAEN 69 L +L + ++V +D V + + G +A Sbjct: 179 RCTGSAVWMVNKLGWANSTAIIKNNPNKFLRSLGDEEMVEFDVV-DGSKGPEAANV 233 >gi|149178825|ref|ZP_01857406.1| probable cold shock protein scoF [Planctomyces maris DSM 8797] gi|148842366|gb|EDL56748.1| probable cold shock protein scoF [Planctomyces maris DSM 8797] Length = 65 Score = 55.0 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+IK +KG+GFI + D+F H S++ L EGQ V ++ ++D Sbjct: 1 MATGTIKKI-TEKGFGFI-----NDGQQDIFFHLSSLDGVTFDQLVEGQTVEFETEKSDR 54 Query: 62 N 62 Sbjct: 55 G 55 >gi|127511419|ref|YP_001092616.1| cold-shock DNA-binding domain-containing protein [Shewanella loihica PV-4] gi|126636714|gb|ABO22357.1| cold-shock DNA-binding protein family [Shewanella loihica PV-4] Length = 205 Score = 55.0 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 6/68 (8%) Query: 2 VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + RG+ ++W N DKG+GFI P +T + DVF+H SA+ + G + Y Q Sbjct: 1 MERGTLVRW-NDDKGFGFIKP--NTPNAQDVFIHISALKQMARKPVV-GDEIIYQS-QQQ 55 Query: 61 ANGKYSAE 68 ++GK A Sbjct: 56 SDGKIKAV 63 >gi|300115369|ref|YP_003761944.1| cold-shock DNA-binding domain-containing protein [Nitrosococcus watsonii C-113] gi|299541306|gb|ADJ29623.1| cold-shock DNA-binding domain protein [Nitrosococcus watsonii C-113] Length = 229 Score = 55.0 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G I +N +KGYGFI+P GD VF H A + G G VT+ D Sbjct: 1 MRMKGEIASWNDEKGYGFISP---MRGGDRVFAHIKAFVNRGRR-PAVGDAVTFSMS-TD 55 Query: 61 ANGKYSA 67 A G++ A Sbjct: 56 ARGRHCA 62 >gi|260752615|ref|YP_003225508.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283856365|ref|YP_162660.2| cold-shock DNA-binding domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|258551978|gb|ACV74924.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283775364|gb|AAV89549.2| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 189 Score = 55.0 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 ++KW+N KGYGF+ D+F+H A +AG+ G Sbjct: 123 TVKWFNRTKGYGFLIRNADQ---QDIFVHAEAFHAAGIKKFEAG 163 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 ++ G +KW++ KG+GF+ ++ D+ +H S + G L EG V Sbjct: 26 ILITGYVKWFDIIKGFGFLI---GSKGEGDILIHFSLLQEYGKRFLPEGSWV 74 >gi|58337126|ref|YP_193711.1| cold-shock protein [Lactobacillus acidophilus NCFM] gi|227903701|ref|ZP_04021506.1| cold-shock protein [Lactobacillus acidophilus ATCC 4796] gi|58254443|gb|AAV42680.1| putative cold-shock protein [Lactobacillus acidophilus NCFM] gi|227868588|gb|EEJ76009.1| cold-shock protein [Lactobacillus acidophilus ATCC 4796] Length = 67 Score = 55.0 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K ++ YGFI + + +S F+ A+ G +L G V Y Q Sbjct: 1 MRLGTVKQFDDGSSYGFIEDDKNHKS---YFVFYKAIKEEGYKSLRVGDRVKYQLAQGKN 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|41056167|ref|NP_956856.1| calcium-regulated heat stable protein 1 [Danio rerio] gi|33989487|gb|AAH56576.1| Calcium regulated heat stable protein 1 [Danio rerio] Length = 155 Score = 55.0 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDANG 63 G K ++ KG+GFITP ++ G+D+F+H S + G + EG V Y + Sbjct: 73 GVCKCFSRSKGHGFITP---SDGGNDIFVHISDI--DGEYVPVEGDEVCYKICSIPPKHE 127 Query: 64 KYSAENLKL 72 K A + + Sbjct: 128 KIQAVEVTI 136 >gi|323452903|gb|EGB08776.1| hypothetical protein AURANDRAFT_63880 [Aureococcus anophagefferens] Length = 2082 Score = 55.0 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K ++ K YGFI + E +F+H + V G L G VTY G+ Sbjct: 243 GMVKSFD--KVYGFIAEDAGGE----MFVHIADVR--GRRELKRGDRVTYSVA--PFRGR 292 Query: 65 YSAENLKL 72 A N+++ Sbjct: 293 PKAVNVEV 300 >gi|170045455|ref|XP_001850324.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167868493|gb|EDS31876.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 120 Score = 55.0 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + G ++ ++ KG+GFI P GDD+F+H S V L G V+Y Sbjct: 22 IEEGKVRSFSRSKGHGFIEP---ASGGDDIFVHISDVEGE-YVPL-PGDEVSY 69 >gi|301057017|gb|ADK54842.1| transcriptional regulator [uncultured soil bacterium] Length = 146 Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 8/78 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59 + G + ++ +GYGFI P+ G+DVFLH + + + + + G V ++ Sbjct: 1 MASGRVVRFDGARGYGFIAPDH---GGEDVFLHVNEMLIPESYVRS---GTAVEFEVEDG 54 Query: 60 DANGKYSAENLKLVPKSS 77 D K S+ L P + Sbjct: 55 DRGLKASSVRLAEGPDGT 72 >gi|118098085|ref|XP_414938.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 152 Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 +++G K + KG+GFI+P + G D+F+H S + + G VTY Sbjct: 67 IYKGVCKCFCRSKGHGFISP---ADGGPDIFVHISDIEGE--YVPVSGDEVTYKVCTIPP 121 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 122 KNEKLQAVEVVI 133 >gi|241761855|ref|ZP_04759941.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373769|gb|EER63329.1| cold-shock DNA-binding domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 189 Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG 49 ++KW+N KGYGF+ D+F+H A +AG+ G Sbjct: 123 TVKWFNRTKGYGFLIRNADQ---QDIFVHAEAFHAAGIKKFEAG 163 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 ++ G +KW++ KG+GF+ ++ D+ +H S + G L EG V Sbjct: 26 ILITGYVKWFDIIKGFGFLI---GSKGEGDILIHFSLLQEYGKRFLPEGSWV 74 >gi|254453709|ref|ZP_05067146.1| cold shock DNA-binding domain protein [Octadecabacter antarcticus 238] gi|198268115|gb|EDY92385.1| cold shock DNA-binding domain protein [Octadecabacter antarcticus 238] Length = 177 Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V +G +KW++ KG+GFI + E G D+ LH + + + G ++ + + + + Sbjct: 10 VMKGHVKWFDAGKGFGFI---LAQEGGADILLHANVLRNFGQSSVADDTGIEVLVAETE- 65 Query: 62 NGKYSAENLKL 72 G + E L + Sbjct: 66 RGLQAIEVLSI 76 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G D+F+H + AGL +L G+ + ++ G Sbjct: 107 RVKWFDKGKGFGFANVFGDD---ADIFVHVEVLRLAGLADLFPGEAIALRAMEG-KRGLM 162 Query: 66 SAENL 70 +AE L Sbjct: 163 AAEVL 167 >gi|256828357|ref|YP_003157085.1| cold-shock DNA-binding domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256577533|gb|ACU88669.1| cold-shock DNA-binding domain protein [Desulfomicrobium baculatum DSM 4028] Length = 168 Score = 54.6 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 D+G+GFITP G G VF+H SA+ G++VTY+ + G A N+ Sbjct: 12 DDRGFGFITPTG---GGTRVFVHISALQKG--RRPRAGEMVTYEVGNSGDKGPR-ALNVN 65 Query: 72 LV 73 V Sbjct: 66 FV 67 >gi|88855543|ref|ZP_01130207.1| hypothetical protein A20C1_01931 [marine actinobacterium PHSC20C1] gi|88815450|gb|EAR25308.1| hypothetical protein A20C1_01931 [marine actinobacterium PHSC20C1] Length = 246 Score = 54.6 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 8/63 (12%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 +N ++G+GFIT ESGD +F H SA L E V++ V++ ++GK A Sbjct: 45 WNDERGFGFIT----LESGDRIFAHISAFPPRDARPTLDE--RVSF-AVEHTSDGKVRAR 97 Query: 69 NLK 71 N++ Sbjct: 98 NIR 100 >gi|87308022|ref|ZP_01090164.1| probable cold shock protein scoF [Blastopirellula marina DSM 3645] gi|87289104|gb|EAQ80996.1| probable cold shock protein scoF [Blastopirellula marina DSM 3645] Length = 65 Score = 54.6 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+IK DKG+GFI +T D+F H A+ +L EGQ VT+ Q Sbjct: 1 MADGTIKKL-TDKGFGFI----NTGGSKDLFFHSKALQGVSFDDLHEGQNVTFTEAQGPK 55 Query: 62 NGKYSAENLK 71 AEN++ Sbjct: 56 G--PCAENVR 63 >gi|300858014|ref|YP_003782997.1| cold shock-like protein B [Corynebacterium pseudotuberculosis FRC41] gi|300685468|gb|ADK28390.1| cold shock-like protein B [Corynebacterium pseudotuberculosis FRC41] gi|302205739|gb|ADL10081.1| cold shock protein B [Corynebacterium pseudotuberculosis C231] gi|302330294|gb|ADL20488.1| cold shock protein B [Corynebacterium pseudotuberculosis 1002] gi|308275975|gb|ADO25874.1| cold shock protein B [Corynebacterium pseudotuberculosis I19] Length = 130 Score = 54.6 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++WY+P+KGYGF+ S +D ++ ++ V AG+ L +GQ + +D+ Sbjct: 1 MPIGRVRWYDPEKGYGFV----SNPGDEDCYVGKN-VLPAGVDKLEKGQRIEFDFAAVGK 55 Query: 62 NGKYSAENLKLVP 74 K A +K++ Sbjct: 56 --KPQALRIKILE 66 >gi|284166114|ref|YP_003404393.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] gi|284015769|gb|ADB61720.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] Length = 65 Score = 54.6 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++N GYGFI+ E + E DVF H V G +L EG+ + +D Q Sbjct: 1 MANGNVDFFNDTGGYGFISTEDADE---DVFFHMEDV---GGPDLEEGEEIEFDIEQA-P 53 Query: 62 NGKYSAENLK 71 G + ++ Sbjct: 54 KGPRATNVVR 63 >gi|195495012|ref|XP_002095086.1| GE19874 [Drosophila yakuba] gi|194181187|gb|EDW94798.1| GE19874 [Drosophila yakuba] Length = 143 Score = 54.6 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62 G +K ++ KG+GFITP G+DVF H S + + G V Y Sbjct: 56 TGIVKSFSRTKGHGFITPHA---GGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPPKY 110 Query: 63 GKYSAENLKL 72 K+ A ++++ Sbjct: 111 EKHQAVHVQI 120 >gi|194872357|ref|XP_001973013.1| GG13577 [Drosophila erecta] gi|190654796|gb|EDV52039.1| GG13577 [Drosophila erecta] Length = 143 Score = 54.6 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62 G +K ++ KG+GFITP G+DVF H S + + G V Y Sbjct: 56 TGIVKSFSRTKGHGFITPHA---GGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPPKY 110 Query: 63 GKYSAENLKL 72 K+ A ++++ Sbjct: 111 EKHQAVHVQI 120 >gi|254992513|ref|ZP_05274703.1| major cold-shock protein [Listeria monocytogenes FSL J2-064] Length = 39 Score = 54.2 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 33 LHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 +H SA+ G L EGQ V ++ V+ G + + KL Sbjct: 1 VHFSAIEGEGFKTLDEGQSVEFEIVEGQ-RGPQAEKVTKL 39 >gi|254491496|ref|ZP_05104675.1| conserved hypothetical protein [Methylophaga thiooxidans DMS010] gi|224462974|gb|EEF79244.1| conserved hypothetical protein [Methylophaga thiooxydans DMS010] Length = 207 Score = 54.2 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G IK +N KGYGFI PE G D+FLH +V S G G+ + Y ++ Sbjct: 4 RRKGKIKTWNEGKGYGFIIPES---GGKDIFLHIKSVQSRG-RVPKLGETIAYTLSKDKQ 59 Query: 62 N 62 N Sbjct: 60 N 60 >gi|90578025|ref|ZP_01233836.1| Predicted membrane protein [Vibrio angustum S14] gi|90441111|gb|EAS66291.1| Predicted membrane protein [Vibrio angustum S14] Length = 204 Score = 54.2 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G I +N KG+GFI P+ DVF H SA+ + +T+ + D Sbjct: 1 MAQQGKIISWNQQKGFGFIAPD---NGEQDVFFHVSALPDKQCR-PRINEAITFCIGK-D 55 Query: 61 ANGKYSAENLK 71 G+ SA + Sbjct: 56 KKGRMSATTVT 66 >gi|284166801|ref|YP_003405080.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] gi|284016456|gb|ADB62407.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] Length = 64 Score = 54.2 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++N GYGFI + S + DVF H V G +LTEG + +D Q Sbjct: 1 MANGKVDFFNDTGGYGFIETDDSDD---DVFFHMEDV---GGEDLTEGTEIEFDIEQA-P 53 Query: 62 NGKYSAENLK 71 G + ++ Sbjct: 54 KGPRATNVVR 63 >gi|145284604|gb|ABP52049.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 27 Score = 54.2 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KG+GFI PE GDDVF+H Sbjct: 1 GQVKWFNNAKGFGFICPES---GGDDVFVH 27 >gi|24372324|ref|NP_716366.1| cold shock domain-contain protein [Shewanella oneidensis MR-1] gi|24346266|gb|AAN53811.1|AE015518_8 cold shock domain family protein [Shewanella oneidensis MR-1] Length = 203 Score = 54.2 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 4/41 (9%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS 40 ++ RG ++W N +KG+GFI PE S DVF+H SA+ Sbjct: 2 LMDRGVLVRW-NEEKGFGFIQPEQS--GARDVFIHISALKM 39 >gi|291448330|ref|ZP_06587720.1| cold-shock DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291351277|gb|EFE78181.1| cold-shock DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 142 Score = 54.2 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 14/85 (16%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQND 60 + G I ++ +GYGFI P+ E +DVF+H + + L G+ V Y D Sbjct: 1 MMTGKILRFDEVRGYGFIAPD---EGDEDVFMHANDLLEEKY--LYQAGRRVEYFLESGD 55 Query: 61 ANGK--------YSAENLKLVPKSS 77 K +A + VP+SS Sbjct: 56 KGPKAGEIRLVRQAAAPVSRVPRSS 80 >gi|37675872|ref|NP_936268.1| hypothetical protein VVA0212 [Vibrio vulnificus YJ016] gi|37200411|dbj|BAC96238.1| predicted membrane protein [Vibrio vulnificus YJ016] Length = 198 Score = 54.2 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59 M +G I +N +KGYGFI+ G VF H S+V + G + + VT++ + Sbjct: 1 MAIKGQIIEWNDEKGYGFISAIGGELK---VFFHISSVTNRGYRPKIKDN--VTFNVAE- 54 Query: 60 DANGKYSAENLKLV 73 D G+++AEN+ ++ Sbjct: 55 DKKGRFNAENVVVL 68 >gi|325849753|ref|ZP_08170900.1| cold shock protein CspB [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479982|gb|EGC83062.1| cold shock protein CspB [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 66 Score = 54.2 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 8/69 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-LFNLTEGQLVTYDYVQNDAN 62 G +++++ KG+GFI E D F H S + S + G V +D Sbjct: 2 EGKVRFFDEKKGFGFIESESG-----DYFFHYSEIISDKDYKTIENGARVEFDVKDLGRG 56 Query: 63 GKYSAENLK 71 +A N+K Sbjct: 57 --DTAFNVK 63 >gi|256422955|ref|YP_003123608.1| cold-shock DNA-binding domain protein [Chitinophaga pinensis DSM 2588] gi|256037863|gb|ACU61407.1| cold-shock DNA-binding domain protein [Chitinophaga pinensis DSM 2588] Length = 67 Score = 54.2 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K++N KG+GFI E S + F+H + + + + V ++ + Sbjct: 6 QGTVKFFNETKGFGFIIHEESDKET---FVHVNGL----IHEIQADDRVEFELQEGRKG- 57 Query: 64 KYSAENLKLV 73 +A N++ + Sbjct: 58 -MNAVNVRRI 66 >gi|110636506|ref|YP_676713.1| cold-shock DNA-binding protein family protein [Cytophaga hutchinsonii ATCC 33406] gi|110279187|gb|ABG57373.1| cold-shock DNA-binding protein family [Cytophaga hutchinsonii ATCC 33406] Length = 63 Score = 54.2 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++ G++K++N KG+GFI + S ++F+H S + +T+ V ++ V+ Sbjct: 1 MNTGTVKFFNETKGFGFI---LDSASNKEIFVHVSGLK----EQITKDDKVQFEIVEG-K 52 Query: 62 NGKYSAENLKL 72 G + E K+ Sbjct: 53 KGVNAVEVKKI 63 >gi|195376475|ref|XP_002047022.1| GJ13199 [Drosophila virilis] gi|194154180|gb|EDW69364.1| GJ13199 [Drosophila virilis] Length = 142 Score = 54.2 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63 G +K ++ KG+GFITP G G+DVF H S + + G V Y Sbjct: 57 GVVKSFSRTKGHGFITPHG---GGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPPKFE 111 Query: 64 KYSAENLKL 72 K+ A ++++ Sbjct: 112 KHQAVHVQI 120 >gi|320158020|ref|YP_004190398.1| membrane protein [Vibrio vulnificus MO6-24/O] gi|319933332|gb|ADV88195.1| membrane protein [Vibrio vulnificus MO6-24/O] Length = 198 Score = 53.8 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59 M +G I +N +KGYGFI+ G VF H S+V + G + + VT++ + Sbjct: 1 MAIKGQIIEWNDEKGYGFISAIGGELK---VFFHISSVTNRGYRPKIKDN--VTFNVAE- 54 Query: 60 DANGKYSAENLKLV 73 D G+++AEN+ ++ Sbjct: 55 DKKGRFNAENVVVL 68 >gi|120602350|ref|YP_966750.1| cold-shock DNA-binding domain-containing protein [Desulfovibrio vulgaris DP4] gi|120562579|gb|ABM28323.1| cold-shock DNA-binding protein family [Desulfovibrio vulgaris DP4] Length = 201 Score = 53.8 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 12/73 (16%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN---LTE-GQLVTYDY 56 M +G I +N ++G+GFI+P+ + VF+H SA + L E G+ V Y Sbjct: 24 MFDQGKIAQWNDERGFGFISPD---DGSPRVFVHISA-----FRSRHPLPEVGERVLYYL 75 Query: 57 VQNDANGKYSAEN 69 G ++ Sbjct: 76 GPLSPKGPRASVV 88 >gi|120601923|ref|YP_966323.1| cold-shock DNA-binding domain-containing protein [Desulfovibrio vulgaris DP4] gi|120562152|gb|ABM27896.1| cold-shock DNA-binding protein family [Desulfovibrio vulgaris DP4] Length = 177 Score = 53.8 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ +G I +N +G+GFITP+ +T VF+H SA G+ V Y Sbjct: 1 MLKQGKIAQWNDARGFGFITPDDATRR---VFVHISAFRHR-YPLPQAGERVFYYLGAPT 56 Query: 61 ANGKYSAENLK 71 G AE ++ Sbjct: 57 DKGPR-AEAVQ 66 >gi|126662142|ref|ZP_01733141.1| cold shock protein [Flavobacteria bacterium BAL38] gi|126625521|gb|EAZ96210.1| cold shock protein [Flavobacteria bacterium BAL38] Length = 148 Score = 53.8 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 9/69 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G+I ++N KG+GFI + E+G+ F+H S + L ++ EG LVTYD + Sbjct: 89 GTIDFFNDSKGFGFI---KAVETGEKYFVHISGL----LDDVKEGNLVTYDLEKGAKG-- 139 Query: 65 YSAENLKLV 73 +A N+K + Sbjct: 140 MNAVNVKKI 148 >gi|209736846|gb|ACI69292.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] gi|303658085|gb|ADM15905.1| Nuclease-sensitive element-binding protein 1 [Salmo salar] Length = 194 Score = 53.8 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 7/50 (14%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQ 50 G++KW+N GYGFI ++ +DVF+H++A+ L ++ +G+ Sbjct: 41 GTVKWFNVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPKKYLRSVGDGE 87 >gi|76802502|ref|YP_327510.1| cold shock protein [Natronomonas pharaonis DSM 2160] gi|76558367|emb|CAI49958.1| probable cold shock protein [Natronomonas pharaonis DSM 2160] Length = 64 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 7/71 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ ++N GYGFI E + E DVF H V G +LTEG + +D + Sbjct: 1 MATGTVDFFNDTGGYGFIETEDADE---DVFFHMEDV---GGEDLTEGTDLEFDIDEA-P 53 Query: 62 NGKYSAENLKL 72 G + +++ Sbjct: 54 KGPRATNVVRV 64 >gi|27367741|ref|NP_763268.1| membrane protein [Vibrio vulnificus CMCP6] gi|27359314|gb|AAO08258.1| membrane protein [Vibrio vulnificus CMCP6] Length = 198 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQN 59 M +G I +N +KGYGFI+ G VF H S+V + G + + VT++ + Sbjct: 1 MAIKGQIIEWNDEKGYGFISAIGGELK---VFFHISSVTNRGYRPKIKDN--VTFNVAE- 54 Query: 60 DANGKYSAENLKLV 73 D G+++AEN+ ++ Sbjct: 55 DKKGRFNAENVVVL 68 >gi|74228917|dbj|BAE21931.1| unnamed protein product [Mus musculus] Length = 138 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Query: 15 GYGFIT---PEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G+GFI+ EG+ DVF+H+S + G +L EG+ V + + ++ Sbjct: 2 GFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSPKG 53 >gi|118082706|ref|XP_422970.2| PREDICTED: hypothetical protein [Gallus gallus] gi|326912009|ref|XP_003202347.1| PREDICTED: cold shock domain-containing protein C2-like [Meleagris gallopavo] Length = 153 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 +++G K ++ +G+GFITPE TE D+F+H S + + EG VTY Sbjct: 68 IYKGVCKQFSRSQGHGFITPENGTE---DIFVHVSDIEGE--YVPVEGDEVTYKVCPIPP 122 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 123 KNQKFQAVEVVL 134 >gi|312379713|gb|EFR25904.1| hypothetical protein AND_08352 [Anopheles darlingi] Length = 169 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 28/82 (34%) Query: 12 PDKGYGFITPEGSTESGDDVFLHR-----------------------SAVASAGLFNLTE 48 P KG+GFITP+ + G +VF+H+ S + G +L E Sbjct: 47 PKKGWGFITPD---DGGQEVFVHQVHCRLSIEFPSASTDGYLFSVLQSVIQMGGFRSLGE 103 Query: 49 GQLVTYDYVQNDANGKYSAENL 70 + V ++ Y A N+ Sbjct: 104 NEEVEFESKLTGKG--YEATNV 123 >gi|189066655|dbj|BAG36202.1| unnamed protein product [Homo sapiens] Length = 153 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 + +G K ++ +G+GFITPE +D+F+H S + + EG VTY Sbjct: 68 MFKGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPP 122 Query: 61 ANGKYSAENLKL 72 N K+ A + L Sbjct: 123 KNQKFQAVEVVL 134 >gi|156537640|ref|XP_001607820.1| PREDICTED: similar to Y-box protein Ct-p40 [Nasonia vitripennis] Length = 335 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA----GLFNLTEGQLVTYDYVQN 59 G++KW+N GYGFI D+F+ + +++ + ++ +G++V +D V Sbjct: 70 TGTVKWFNVKSGYGFINRSVFHF---DIFVCQRCISNNLPSKAVRSVGDGEVVEFDVVIG 126 Query: 60 DANGKYSAEN 69 + G +A Sbjct: 127 E-KGNEAANV 135 >gi|126334673|ref|XP_001367062.1| PREDICTED: similar to Calcium regulated heat stable protein 1, 24kDa [Monodelphis domestica] Length = 147 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 +++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 62 IYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPMEGDEVTYKMCSIPP 116 Query: 61 ANGKYSAENLKL 72 N K+ A + + Sbjct: 117 KNEKHQAVEVVI 128 >gi|326929252|ref|XP_003210782.1| PREDICTED: calcium-regulated heat stable protein 1-like, partial [Meleagris gallopavo] Length = 102 Score = 53.8 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 +++G K + KG+GFI+P + G D+F+H S + + G VTY Sbjct: 17 IYKGVCKCFCRSKGHGFISP---ADGGPDIFVHISDIEGE--YVPVSGDEVTYKVCTIPP 71 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 72 KNEKLQAVEVVI 83 >gi|256784096|ref|ZP_05522527.1| DNA-binding protein [Streptomyces lividans TK24] Length = 142 Score = 53.4 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59 + G + ++ +GYGFI PE + G+DVFLH + + + + G +V ++ Sbjct: 1 MVAGRVVRFDGTRGYGFIAPE---DGGEDVFLHVNDLLIPEESVRS---GLVVEFEVETG 54 Query: 60 DANGKYS 66 + K S Sbjct: 55 ERGLKAS 61 >gi|242246995|ref|NP_001156264.1| calcium-regulated heat stable protein 1 [Acyrthosiphon pisum] gi|239789112|dbj|BAH71202.1| ACYPI008400 [Acyrthosiphon pisum] Length = 135 Score = 53.4 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63 G +K++ KG+GFITP+ D F+H S + L G V Y Sbjct: 55 GKVKYFCKSKGHGFITPD---NGDPDTFVHISDIEGE-FVPL-PGDTVHYRLCPIPPKLE 109 Query: 64 KYSAENLKLV 73 K A ++++V Sbjct: 110 KCQAVHVEIV 119 >gi|114564799|ref|YP_752313.1| cold-shock DNA-binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114336092|gb|ABI73474.1| cold-shock DNA-binding protein family [Shewanella frigidimarina NCIMB 400] Length = 204 Score = 53.4 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG++ +N +KG+GFI PE DVF+H S + + G + + +N Sbjct: 1 MERGTLIRWNTEKGFGFIKPETGDN--QDVFIHISTLKHMARKPIV-GDEILFHR-ENQP 56 Query: 62 NGKYSAE 68 +GK A Sbjct: 57 DGKVKAV 63 >gi|225719590|gb|ACO15641.1| Cold shock domain-containing protein C2 [Caligus clemensi] Length = 171 Score = 53.4 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +H G++K++ +G+GFITP S + F+H S + + V + Sbjct: 67 IHEGTVKYFCRSRGFGFITPNKSVNDNQEFFMHISDIEGEFVP--RRNDSVQFKVCPIPP 124 Query: 62 N-GKYSAENLKLV 73 K+ A ++++ Sbjct: 125 RFEKFQAVQVRII 137 >gi|322369491|ref|ZP_08044056.1| cold-shock DNA-binding domain protein [Haladaptatus paucihalophilus DX253] gi|320551223|gb|EFW92872.1| cold-shock DNA-binding domain protein [Haladaptatus paucihalophilus DX253] Length = 64 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++N GYGFI+ + S + DVF H V G +LTEG + +D Q Sbjct: 1 MANGKVDFFNDTGGYGFISTDDSDD---DVFFHMEDV---GGEDLTEGTDIEFDIEQA-P 53 Query: 62 NGKYSAENLK 71 G + ++ Sbjct: 54 KGPRATNVVR 63 >gi|104773833|ref|YP_618813.1| cold shock protein B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513840|ref|YP_812746.1| cold shock protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422914|emb|CAI97576.1| Cold shock protein B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093155|gb|ABJ58308.1| cold-shock DNA-binding protein family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125497|gb|ADY84827.1| Putative cold-shock protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 69 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 + G +K + +GFI + + +S F+ +A+ G L GQ V Y Q Sbjct: 1 MRTGLVKQFAEKASFGFIEDDQNHKS---YFVFYTAIKEEGYKRLEVGQRVRYQLAQG 55 >gi|297157600|gb|ADI07312.1| putative DNA binding protein [Streptomyces bingchenggensis BCW-1] Length = 137 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 8/78 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQN 59 M G I ++ +GYGFI P+ + G+DVF+H + + +L G V + Sbjct: 1 MTITGKILRFDEFRGYGFIAPD---DGGEDVFMHANDLVDE--KHLFQPGSKVEFVPEYG 55 Query: 60 DANGKYSAENLKLVPKSS 77 D K A +++V +S+ Sbjct: 56 DKGPK--ASEVRIVQRSA 71 >gi|269138656|ref|YP_003295357.1| putative cold shock protein [Edwardsiella tarda EIB202] gi|267984317|gb|ACY84146.1| putative cold shock protein [Edwardsiella tarda EIB202] gi|304558666|gb|ADM41330.1| Cold shock protein CspH [Edwardsiella tarda FL6-60] Length = 70 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +++++ G GFI+P ++ DV +H SA+ L+ G V + + G Sbjct: 6 TGIVRFFDYRSGKGFISP---SDGRKDVQVHISALHLKDEETLSAGLRVEF-CRMHGRQG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PTAANV 67 >gi|319428067|gb|ADV56141.1| Cold-shock protein DNA-binding protein [Shewanella putrefaciens 200] Length = 149 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-GQLVTYDYVQN 59 M +G +KW++ +G+GFIT S G D + H S V + L E G VT++ + Sbjct: 1 MRIQGVVKWFSVPQGFGFIT---SITEGTDHYFHVSDVIGS---ALPEIGDKVTFETIST 54 Query: 60 DA--NGKY 65 GK Sbjct: 55 PKGLRGKR 62 >gi|329925038|ref|ZP_08279982.1| cold-shock DNA-binding domain protein [Paenibacillus sp. HGF5] gi|328940157|gb|EGG36489.1| cold-shock DNA-binding domain protein [Paenibacillus sp. HGF5] Length = 80 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G+++ +N KGYGF+ +G+ G+ +F H + GL L+ G+ ++++ + DA G Sbjct: 11 TGTVRKFNDPKGYGFVDVDGT---GERLFFHINESIEPGLGWLSYGERISFEIGE-DAKG 66 Query: 64 KYSAENLKLV 73 + A +KL+ Sbjct: 67 RNHAVKIKLI 76 >gi|293346846|ref|XP_001067034.2| PREDICTED: lin-28 homolog [Rattus norvegicus] gi|293358614|ref|XP_233546.4| PREDICTED: lin-28 homolog [Rattus norvegicus] Length = 196 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Query: 11 NPDKGYGFITPEGST----ESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 N G+GF++ + DVF+H+S + + G +L EG+ V + + ++ Sbjct: 35 NVRMGFGFLSMTACAGVALDPTMDVFVHQSRLHTEGFRSLKEGEAVEFTFKKSAKG 90 >gi|296224861|ref|XP_002758248.1| PREDICTED: calcium-regulated heat stable protein 1-like [Callithrix jacchus] Length = 147 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 117 KNEKLQAVEVVI 128 >gi|296219544|ref|XP_002755926.1| PREDICTED: calcium-regulated heat stable protein 1-like [Callithrix jacchus] Length = 147 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 117 KNEKLQAVEVVI 128 >gi|221052274|ref|XP_002257713.1| cold-shock protein [Plasmodium knowlesi strain H] gi|193807544|emb|CAQ38049.1| cold-shock protein, putative [Plasmodium knowlesi strain H] Length = 144 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++ ++ KGYGFI P + G D+F+H + + Sbjct: 33 TGTVIKFDRRKGYGFIKP---NDGGPDIFVHYTDI 64 >gi|149409245|ref|XP_001506560.1| PREDICTED: similar to transforming, acidic coiled-coil containing protein 3 [Ornithorhynchus anatinus] Length = 154 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 69 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 123 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 124 KNEKLQAVEVVI 135 >gi|109127552|ref|XP_001102514.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 1 [Macaca mulatta] gi|109127554|ref|XP_001102603.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2 [Macaca mulatta] gi|109127556|ref|XP_001102694.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3 [Macaca mulatta] gi|297283445|ref|XP_002802430.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta] gi|297283448|ref|XP_002802431.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta] gi|297283450|ref|XP_002802432.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta] gi|297283452|ref|XP_002802433.1| PREDICTED: calcium-regulated heat stable protein 1 [Macaca mulatta] Length = 147 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 117 KNEKLQAVEVVI 128 >gi|4583307|gb|AAD25021.1|AF115345_1 calcium-regulated heat stable protein CRHSP-24 [Homo sapiens] Length = 147 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 117 KNEKLQAVEVVI 128 >gi|74213976|dbj|BAE29409.1| unnamed protein product [Mus musculus] Length = 148 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 63 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 117 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 118 KNEKLQAVEVVI 129 >gi|109715854|ref|NP_001035941.1| calcium-regulated heat stable protein 1 [Homo sapiens] gi|109715858|ref|NP_055131.2| calcium-regulated heat stable protein 1 [Homo sapiens] gi|114660916|ref|XP_001137922.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 6 [Pan troglodytes] gi|114660918|ref|XP_001138007.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 7 [Pan troglodytes] gi|114660920|ref|XP_001137407.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 1 [Pan troglodytes] gi|114660922|ref|XP_001137655.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 3 [Pan troglodytes] gi|114660924|ref|XP_001137742.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 4 [Pan troglodytes] gi|114660926|ref|XP_523291.2| PREDICTED: calcium-regulated heat stable protein 1 isoform 9 [Pan troglodytes] gi|114660928|ref|XP_001137575.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 2 [Pan troglodytes] gi|114660930|ref|XP_001138086.1| PREDICTED: calcium-regulated heat stable protein 1 isoform 8 [Pan troglodytes] gi|114660932|ref|XP_001137823.1| PREDICTED: calcium-regulated heat-stable protein 1 isoform 5 [Pan troglodytes] gi|332845244|ref|XP_003315008.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan troglodytes] gi|332845246|ref|XP_003315009.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan troglodytes] gi|332845248|ref|XP_003315010.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan troglodytes] gi|332845251|ref|XP_003315011.1| PREDICTED: calcium-regulated heat stable protein 1 [Pan troglodytes] gi|41016932|sp|Q9Y2V2|CHSP1_HUMAN RecName: Full=Calcium-regulated heat stable protein 1; AltName: Full=Calcium-regulated heat-stable protein of 24 kDa; Short=CRHSP-24 gi|315364426|pdb|3AQQ|A Chain A, Crystal Structure Of Human Crhsp-24 gi|315364427|pdb|3AQQ|C Chain C, Crystal Structure Of Human Crhsp-24 gi|315364428|pdb|3AQQ|B Chain B, Crystal Structure Of Human Crhsp-24 gi|315364429|pdb|3AQQ|D Chain D, Crystal Structure Of Human Crhsp-24 gi|13097198|gb|AAH03366.1| Calcium regulated heat stable protein 1, 24kDa [Homo sapiens] gi|82568913|gb|AAI08284.1| Calcium regulated heat stable protein 1, 24kDa [Homo sapiens] gi|119605602|gb|EAW85196.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo sapiens] gi|119605603|gb|EAW85197.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo sapiens] gi|119605604|gb|EAW85198.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo sapiens] gi|119605605|gb|EAW85199.1| calcium regulated heat stable protein 1, 24kDa, isoform CRA_a [Homo sapiens] gi|189053098|dbj|BAG34720.1| unnamed protein product [Homo sapiens] gi|190689713|gb|ACE86631.1| calcium regulated heat stable protein 1, 24kDa protein [synthetic construct] gi|190691077|gb|ACE87313.1| calcium regulated heat stable protein 1, 24kDa protein [synthetic construct] gi|307686115|dbj|BAJ20988.1| calcium regulated heat stable protein 1, 24kDa [synthetic construct] Length = 147 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 117 KNEKLQAVEVVI 128 >gi|13385290|ref|NP_080097.1| calcium-regulated heat stable protein 1 [Mus musculus] gi|309264712|ref|XP_003086339.1| PREDICTED: calcium-regulated heat stable protein 1-like [Mus musculus] gi|41016923|sp|Q9CR86|CHSP1_MOUSE RecName: Full=Calcium-regulated heat stable protein 1; AltName: Full=Calcium-regulated heat-stable protein of 24 kDa; Short=CRHSP-24 gi|15778558|gb|AAL07470.1|AF414101_1 calcineurin substrate CRHSP-24 [Mus musculus] gi|12833143|dbj|BAB22408.1| unnamed protein product [Mus musculus] gi|12834885|dbj|BAB23077.1| unnamed protein product [Mus musculus] gi|12836086|dbj|BAB23495.1| unnamed protein product [Mus musculus] gi|15029979|gb|AAH11225.1| Calcium regulated heat stable protein 1 [Mus musculus] gi|56541222|gb|AAH86754.1| Calcium regulated heat stable protein 1 [Mus musculus] gi|74140430|dbj|BAE42365.1| unnamed protein product [Mus musculus] gi|74150621|dbj|BAE25463.1| unnamed protein product [Mus musculus] gi|74196650|dbj|BAE34427.1| unnamed protein product [Mus musculus] gi|74199323|dbj|BAE33186.1| unnamed protein product [Mus musculus] gi|74208059|dbj|BAE29139.1| unnamed protein product [Mus musculus] gi|74213308|dbj|BAE41777.1| unnamed protein product [Mus musculus] gi|74214291|dbj|BAE40388.1| unnamed protein product [Mus musculus] gi|74222561|dbj|BAE38151.1| unnamed protein product [Mus musculus] gi|148664880|gb|EDK97296.1| mCG123718 [Mus musculus] gi|148703087|gb|EDL35034.1| mCG1049436 [Mus musculus] Length = 148 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 63 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 117 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 118 KNEKLQAVEVVI 129 >gi|22758142|ref|NP_690003.1| calcium-regulated heat stable protein 1 [Rattus norvegicus] gi|41016763|sp|Q9WU49|CHSP1_RAT RecName: Full=Calcium-regulated heat stable protein 1; AltName: Full=Calcium-regulated heat-stable protein of 24 kDa; Short=CRHSP-24 gi|4583309|gb|AAD25022.1|AF115346_1 calcium-regulated heat stable protein CRHSP-24 [Rattus sp.] gi|49522734|gb|AAH71173.1| Calcium regulated heat stable protein 1 [Rattus norvegicus] gi|149042602|gb|EDL96239.1| calcium regulated heat stable protein 1, isoform CRA_a [Rattus norvegicus] Length = 147 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 117 KNEKLQAVEVVI 128 >gi|86143394|ref|ZP_01061796.1| cold shock protein, putative DNA-binding protein [Leeuwenhoekiella blandensis MED217] gi|85830299|gb|EAQ48759.1| cold shock protein, putative DNA-binding protein [Leeuwenhoekiella blandensis MED217] Length = 154 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G + +++ KG+GFI TE+ + F+H S + + E V+++ + Sbjct: 91 IRKGKVSFFDHSKGFGFII---DTENQEKYFVHVSGILEDAI---DENDKVSFELERGQK 144 Query: 62 NGKYSAENLKLV 73 +A +K + Sbjct: 145 G--MNAVQVKKI 154 >gi|110667237|ref|YP_657048.1| cold shock protein [Haloquadratum walsbyi DSM 16790] gi|109624984|emb|CAJ51397.1| probable cold shock protein [Haloquadratum walsbyi DSM 16790] Length = 64 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++N GYGFI+ + + + VF H V G +L EGQ V ++ Q+ Sbjct: 1 MAEGKVDFFNDTGGYGFISTDDTDDD---VFFHMEDV---GGPDLEEGQEVEFEIEQS-P 53 Query: 62 NGKYSAENLK 71 G +A ++ Sbjct: 54 KGPRAANLIR 63 >gi|294498585|ref|YP_003562285.1| cold shock protein [Bacillus megaterium QM B1551] gi|294348522|gb|ADE68851.1| cold shock protein [Bacillus megaterium QM B1551] Length = 60 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +K Y+ +KG+GFI P+ E +F+H S+V ++ +L GQ V+Y G + Sbjct: 1 MKCYDKEKGFGFILPDNGLEE---LFVHFSSVYNS--NSLKVGQEVSY-IEYKGHKGPQA 54 >gi|301768643|ref|XP_002919738.1| PREDICTED: calcium-regulated heat stable protein 1-like [Ailuropoda melanoleuca] gi|281342656|gb|EFB18240.1| hypothetical protein PANDA_008393 [Ailuropoda melanoleuca] Length = 147 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 117 KNEKLQAVEVVI 128 >gi|229595426|ref|XP_001017681.3| hypothetical protein TTHERM_00340170 [Tetrahymena thermophila] gi|225566130|gb|EAR97436.3| hypothetical protein TTHERM_00340170 [Tetrahymena thermophila SB210] Length = 801 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43 ++G++K+++ DK YGFI + S D+F+H + AG+ Sbjct: 556 YKGTLKFFDQDKNYGFIVEDESR---TDIFVHFDDLQKAGI 593 >gi|193480019|gb|ACF18026.1| cold shock protein [uncultured bacterium] Length = 40 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 VF+H A+ G +LTEGQ V Y V+ AE++ Sbjct: 3 VFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG--LQAEDV 40 >gi|114051954|ref|NP_001039416.1| calcium-regulated heat stable protein 1 [Bos taurus] gi|84201642|gb|AAI11638.1| Calcium regulated heat stable protein 1, 24kDa [Bos taurus] gi|296473437|gb|DAA15552.1| calcium regulated heat stable protein 1, 24kDa [Bos taurus] Length = 147 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPMEGDEVTYKMCSIPP 116 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 117 KNEKLQAVEVVI 128 >gi|118380115|ref|XP_001023222.1| 'Cold-shock' DNA-binding domain containing protein [Tetrahymena thermophila] gi|89304989|gb|EAS02977.1| 'Cold-shock' DNA-binding domain containing protein [Tetrahymena thermophila SB210] Length = 725 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 12/82 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLV--TY 54 + GS+K+++ +K YGFI + + D+F+H + AG L + +G ++ ++ Sbjct: 612 RYMGSLKFFDENKNYGFIVMD---DDNRDIFVHYDDLQKAGITKEFLKSSKQGNVIRFSF 668 Query: 55 DYVQNDANGKYS--AENLKLVP 74 +Q K S A L+++P Sbjct: 669 SCMQYIGKYKQSKKAVELQVMP 690 >gi|237805445|ref|ZP_04592149.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026552|gb|EGI06607.1| cold shock protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 31 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 4/32 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFL 33 G++KW+N +KG+GFITP +SGDD+F+ Sbjct: 4 RQTGTVKWFNDEKGFGFITP----QSGDDLFV 31 >gi|262045860|ref|ZP_06018824.1| cold shock protein [Lactobacillus crispatus MV-3A-US] gi|260573819|gb|EEX30375.1| cold shock protein [Lactobacillus crispatus MV-3A-US] Length = 67 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G+++ ++ YGFI + + +S F+ A+ G L GQ V Y Q Sbjct: 1 MRLGTVEQFDEGSSYGFIEDDRNHKS---YFVFYKAIKEEGYKTLQVGQRVKYQLAQGKN 57 Query: 62 N 62 Sbjct: 58 G 58 >gi|195360744|gb|ACF95833.1| CSP [uncultured bacterium] Length = 41 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 VF+H A+ G +LTEGQ V Y V+ AE++ Sbjct: 2 VFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG--LQAEDV 39 >gi|311251531|ref|XP_003124657.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 3 [Sus scrofa] Length = 183 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 +++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 98 IYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 152 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 153 KNEKLQAVEVVI 164 >gi|291220834|ref|XP_002730428.1| PREDICTED: cold shock domain containing E1, RNA binding-like [Saccoglossus kowalevskii] Length = 816 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GFI E ++ +F H S V G L G V + VQN +GKYSA N Sbjct: 701 DSVKGQFGFIDYEVGEDNKK-LFFHMSEVQ-EG-TELQPGDEVEFVIVQNQRSGKYSACN 757 Query: 70 LKLVPK 75 ++ + K Sbjct: 758 VRRISK 763 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +GFI + E +VF H S + +L G V Y + A Sbjct: 550 FGFIE---TAEHDREVFFHYSEFDGD-VNSLDLGDEVEYSVARKGAK 592 >gi|260904269|ref|ZP_05912591.1| cold shock protein [Brevibacterium linens BL2] Length = 126 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 10/70 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +KW++ DKG+GF+ E +++ FLH S + +T+G + YD V + Sbjct: 1 MPTGRVKWFDVDKGFGFVIAEDGSQA----FLHSSVLPED--AEVTKGTRLDYDVVDSRR 54 Query: 62 NGKYSAENLK 71 A+ LK Sbjct: 55 G----AQVLK 60 >gi|224095055|ref|XP_002197370.1| PREDICTED: similar to cold shock domain containing C2, RNA binding [Taeniopygia guttata] Length = 161 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE TE D+F+H S + + EG VTY N Sbjct: 78 KGVCKQFSRSQGHGFITPENGTE---DIFVHVSDIEGE--YVPVEGDEVTYKVCPIPPKN 132 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 133 QKFQAVEVVL 142 >gi|311251533|ref|XP_003124655.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 1 [Sus scrofa] gi|311251535|ref|XP_003124658.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 4 [Sus scrofa] gi|311251537|ref|XP_003124656.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 2 [Sus scrofa] Length = 146 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 +++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 61 IYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 115 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 116 KNEKLQAVEVVI 127 >gi|149725937|ref|XP_001492855.1| PREDICTED: similar to Calcium regulated heat stable protein 1, 24kDa [Equus caballus] Length = 147 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 117 KNEKLQAVEVVI 128 >gi|332240252|ref|XP_003269303.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 1 [Nomascus leucogenys] gi|332240254|ref|XP_003269304.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 2 [Nomascus leucogenys] gi|332240256|ref|XP_003269305.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 3 [Nomascus leucogenys] gi|332240258|ref|XP_003269306.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 4 [Nomascus leucogenys] gi|332240260|ref|XP_003269307.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 5 [Nomascus leucogenys] gi|332240262|ref|XP_003269308.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 6 [Nomascus leucogenys] gi|332240264|ref|XP_003269309.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 7 [Nomascus leucogenys] gi|332240266|ref|XP_003269310.1| PREDICTED: calcium-regulated heat stable protein 1-like isoform 8 [Nomascus leucogenys] Length = 147 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 62 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 116 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 117 KNEKLQAVEVVI 128 >gi|149250840|ref|XP_001474936.1| PREDICTED: calcium-regulated heat stable protein 1-like [Mus musculus] Length = 148 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 63 VYKGVCKCFCRSKGHGFITP---GDGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 117 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 118 KNEKLQAVEVVI 129 >gi|74181788|dbj|BAE32601.1| unnamed protein product [Mus musculus] Length = 148 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 63 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 117 Query: 61 ANGKYSAENLKL 72 N K A L + Sbjct: 118 KNEKLQAVELVI 129 >gi|296237954|ref|XP_002763968.1| PREDICTED: hypothetical protein LOC100400889 [Callithrix jacchus] Length = 297 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 214 KGVCKQFSRAQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 268 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 269 QKFQAVEVVL 278 >gi|261856418|ref|YP_003263701.1| cold-shock DNA-binding domain protein [Halothiobacillus neapolitanus c2] gi|261836887|gb|ACX96654.1| cold-shock DNA-binding domain protein [Halothiobacillus neapolitanus c2] Length = 204 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W KG+GFI P + G DVF+H + + +G++VTY + Sbjct: 1 MRAKGKIVRW-QDAKGFGFIHP---LDGGADVFVHIRSFTNR-QRRPVDGEIVTYTVEHD 55 Query: 60 DANGKYSAENL 70 N K +++ + Sbjct: 56 AQNRKRASDIV 66 >gi|148231151|ref|NP_001089414.1| cold shock domain protein A [Xenopus laevis] gi|62740182|gb|AAH94195.1| MGC115344 protein [Xenopus laevis] Length = 221 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 3/34 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37 +G++KW+N GYGFI ++ +DVF+H+ A Sbjct: 37 QGTVKWFNVRNGYGFI---NRNDTKEDVFVHQGA 67 >gi|269217410|ref|ZP_06161264.1| cold-shock domain protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269213136|gb|EEZ79476.1| cold-shock domain protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 141 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 10/75 (13%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G +K+++ KG+GFI + G +VF SA+ G + G V + + Sbjct: 18 VPTGRVKFFDEKKGFGFIAGD----DGTEVFFSGSAL-PVGSR-VKAGTRVEFSVA-DTR 70 Query: 62 NGKYSAENLKLVPKS 76 G + L + PK+ Sbjct: 71 RGPQA---LTVAPKA 82 >gi|195328232|ref|XP_002030820.1| GM25657 [Drosophila sechellia] gi|195590920|ref|XP_002085192.1| GD14664 [Drosophila simulans] gi|194119763|gb|EDW41806.1| GM25657 [Drosophila sechellia] gi|194197201|gb|EDX10777.1| GD14664 [Drosophila simulans] Length = 143 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62 G +K ++ KG+GFITP G+DVF H S + + G V Y Sbjct: 56 TGMVKSFSRTKGHGFITP---NAGGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPPKY 110 Query: 63 GKYSAENLKL 72 K+ A ++++ Sbjct: 111 EKHQAVHVQI 120 >gi|21356601|ref|NP_648920.1| CG9705, isoform A [Drosophila melanogaster] gi|24665520|ref|NP_730197.1| CG9705, isoform B [Drosophila melanogaster] gi|75027588|sp|Q9VVA0|Y9705_DROME RecName: Full=Cold shock domain-containing protein CG9705 gi|7294059|gb|AAF49414.1| CG9705, isoform A [Drosophila melanogaster] gi|16648430|gb|AAL25480.1| LD47312p [Drosophila melanogaster] gi|23093318|gb|AAN11740.1| CG9705, isoform B [Drosophila melanogaster] gi|220956110|gb|ACL90598.1| CG9705-PA [synthetic construct] Length = 143 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62 G +K ++ KG+GFITP G+DVF H S + + G V Y Sbjct: 56 TGMVKSFSRTKGHGFITP---NAGGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPPKY 110 Query: 63 GKYSAENLKL 72 K+ A ++++ Sbjct: 111 EKHQAVHVQI 120 >gi|254439666|ref|ZP_05053160.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus 307] gi|198255112|gb|EDY79426.1| 'Cold-shock' DNA-binding domain protein [Octadecabacter antarcticus 307] Length = 181 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW++ KG+GF G DVF+H + AGL +L G+ + +Q G Sbjct: 111 RVKWFDKGKGFGFANVFGDD---ADVFVHNEVLRLAGLADLFSGEAIALRAMQG-KRGLM 166 Query: 66 SAENL 70 +AE L Sbjct: 167 AAEVL 171 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IKW++ KG+GFI + G D+ LH + + + G ++ +G + Q + G Sbjct: 17 GHIKWFDAVKGFGFI---LVQDGGADILLHANVLRNFGQSSVADGTGIEVWVAQTE-RGL 72 Query: 65 YSAENLKL 72 + E L + Sbjct: 73 QAVEILSM 80 >gi|289767977|ref|ZP_06527355.1| DNA-binding protein [Streptomyces lividans TK24] gi|289698176|gb|EFD65605.1| DNA-binding protein [Streptomyces lividans TK24] Length = 162 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59 + G + ++ +GYGFI PE + G+DVFLH + + + + G +V ++ Sbjct: 21 MVAGRVVRFDGTRGYGFIAPE---DGGEDVFLHVNDLLIPEESVRS---GLVVEFEVETG 74 Query: 60 DANGKYS 66 + K S Sbjct: 75 ERGLKAS 81 >gi|116621692|ref|YP_823848.1| cold-shock DNA-binding protein family protein [Candidatus Solibacter usitatus Ellin6076] gi|116224854|gb|ABJ83563.1| cold-shock DNA-binding protein family [Candidatus Solibacter usitatus Ellin6076] Length = 144 Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQNDA 61 GS+ Y KG+GF+ P+ + G D+F H S + S GL L G V Y+ D Sbjct: 69 QSGSVVTYFEAKGFGFLRPD---DGGRDIFFHVSRL-SEGLATDLRPGTRVLYELGM-DR 123 Query: 62 NGKYSAENLKL 72 GK +A +L++ Sbjct: 124 TGKMAASSLRI 134 >gi|332293352|ref|YP_004431961.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171438|gb|AEE20693.1| cold-shock DNA-binding domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 148 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +++++ KG+GFI + E F+H S V G L EG V+Y+ + Sbjct: 84 IRTGFVEFFDSSKGFGFIKDADTPEK---YFVHISEV-RDG--ELKEGNKVSYEIERGQK 137 Query: 62 N 62 Sbjct: 138 G 138 >gi|310815595|ref|YP_003963559.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium vulgare Y25] gi|308754330|gb|ADO42259.1| 'Cold-shock' DNA-binding domain protein [Ketogulonicigenium vulgare Y25] Length = 176 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KWY+ KG+GFI + D+ LH + + GL ++ EG +T V G Sbjct: 14 GHVKWYDATKGFGFIV---DPQGRSDILLHANVLRRFGLNSVGEGIEITV-LVSRTPKGA 69 Query: 65 YSAENLKL 72 + E L + Sbjct: 70 QAIEILAV 77 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +K ++ +G+GF GS + DVF+H + G +L +G+ + + G Sbjct: 107 RVKRFDRTRGFGFANVFGSAD---DVFIHIEVMREGGFSDLRQGEAICLRLI-AGKRGPM 162 Query: 66 SAENLKLVPKSS 77 + + ++P + Sbjct: 163 A---VAVMPWEA 171 >gi|315126645|ref|YP_004068648.1| cold shock DNA-binding domain-containing protein [Pseudoalteromonas sp. SM9913] gi|315015159|gb|ADT68497.1| cold shock DNA-binding domain-containing protein [Pseudoalteromonas sp. SM9913] Length = 192 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G +K +N +KG+GFI D F+H S++ G ++ ++ D Sbjct: 1 MNKGLLKSWNDEKGFGFIKSTTLQH---DTFIHISSLKHMSRK-PKVGDIIYFEVA-TDP 55 Query: 62 NGKYSAENLKL 72 NGK A N ++ Sbjct: 56 NGKTKAVNCRI 66 >gi|291410316|ref|XP_002721452.1| PREDICTED: cold shock domain containing C2, RNA binding-like [Oryctolagus cuniculus] Length = 200 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 117 KGICKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 171 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 172 QKFQAVEVVL 181 >gi|113971703|ref|YP_735496.1| cold-shock DNA-binding protein family protein [Shewanella sp. MR-4] gi|113886387|gb|ABI40439.1| cold-shock DNA-binding protein family [Shewanella sp. MR-4] Length = 185 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 4/39 (10%) Query: 2 VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39 + RG ++W N +KG+GFI PE S G DVF+H + + Sbjct: 1 MERGILVRW-NDEKGFGFIQPEDSK--GKDVFIHITVLK 36 >gi|323488056|ref|ZP_08093309.1| hypothetical protein GPDM_01905 [Planococcus donghaensis MPA1U2] gi|323398324|gb|EGA91117.1| hypothetical protein GPDM_01905 [Planococcus donghaensis MPA1U2] Length = 68 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ +KG G IT + +G+D F + G L GQ V + + A+ Sbjct: 2 EGKVKSFDENKGIGMITGD----NGEDFFFEEININVDGFRKLMPGQPVKFTTYEGVADK 57 Query: 64 KYSAENLKLV 73 + A N+ L+ Sbjct: 58 ERVATNVTLI 67 >gi|116003971|ref|NP_001070345.1| cold shock domain-containing protein C2 [Bos taurus] gi|115305132|gb|AAI23466.1| Cold shock domain containing C2, RNA binding [Bos taurus] gi|296486964|gb|DAA29077.1| RNA-binding protein pippin [Bos taurus] Length = 153 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 70 KGICKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKVCPIPPKN 124 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 125 QKFQAVEVVL 134 >gi|261252691|ref|ZP_05945264.1| cold shock domain family protein [Vibrio orientalis CIP 102891] gi|260936082|gb|EEX92071.1| cold shock domain family protein [Vibrio orientalis CIP 102891] Length = 155 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 7/67 (10%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 ++W + D+G+GFI + D+F+H S G G V + N NGK S Sbjct: 6 VRWVD-DRGFGFINSDAYP---GDIFVHVSKFKK-GYRRPKIGDKVEFQIEVN--NGKTS 58 Query: 67 AENLKLV 73 A N+ LV Sbjct: 59 AHNVLLV 65 >gi|226953537|ref|ZP_03824001.1| cold-shock DNA-binding protein family protein [Acinetobacter sp. ATCC 27244] gi|226835715|gb|EEH68098.1| cold-shock DNA-binding protein family protein [Acinetobacter sp. ATCC 27244] Length = 232 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G IK YN D+G+GFI E D+F H + G G+LV + V++ Sbjct: 1 MFLTGKIKNYNSDRGFGFIEVEHDRS---DIFFHITDFPKIG-GEPKTGELVKFLIVED- 55 Query: 61 ANGKYSAENL 70 GK+ A N+ Sbjct: 56 -KGKFKATNI 64 >gi|300811331|ref|ZP_07091828.1| cold-shock DNA-binding domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313123449|ref|YP_004033708.1| cold-shock DNA-binding protein family [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300497695|gb|EFK32720.1| cold-shock DNA-binding domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312280012|gb|ADQ60731.1| Cold-shock DNA-binding protein family [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684359|gb|EGD26528.1| major cold shock protein [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 69 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 + G +K + +GFI + + + F+ +A+ G L GQ V Y Q Sbjct: 1 MRTGLVKQFAEKASFGFIEDDQNHKL---YFVFYTAIKEEGYKRLEVGQRVRYQLAQG 55 >gi|224457360|ref|ZP_03665833.1| cold shock DNA -binding domain-containing protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254875063|ref|ZP_05247773.1| cold shock protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254841062|gb|EET19498.1| cold shock protein [Francisella tularensis subsp. tularensis MA00-2987] Length = 142 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 8/75 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++K+YN DKGYGFI E S + V L S + G V ++ Q+ Sbjct: 2 QGTVKFYNKDKGYGFIYSEESEKDFLMVKLFLSELLRNG------SDDVEFEVAQSKKG- 54 Query: 64 KYSAENLKLVPKSSN 78 A N+KL+ + + Sbjct: 55 -EKAINIKLLKSAED 68 >gi|307332445|ref|ZP_07611509.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306881914|gb|EFN13036.1| cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 134 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 8/78 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQN 59 M G I ++ +GYGFI P+ + G+DVF+H + + +L G V + Sbjct: 1 MTTTGKILRFDEFRGYGFIAPD---DGGEDVFMHANDLLDE--KHLFQPGSKVRFVPEYG 55 Query: 60 DANGKYSAENLKLVPKSS 77 D K A ++++ +++ Sbjct: 56 DKGPK--ASEVRVLERAA 71 >gi|196051124|gb|ACG68730.1| cold shock protein [uncultured bacterium] Length = 36 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 VF+H A+ G +LTEGQ V Y V+ Sbjct: 5 VFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG 36 >gi|145480845|ref|XP_001426445.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124393520|emb|CAK59047.1| unnamed protein product [Paramecium tetraurelia] Length = 415 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 12/81 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYD- 55 ++ G +K+++ K YGFI + E D+F+H + AG L +G + + Sbjct: 326 IYTGRLKFFDEQKNYGFIVMD---EDKSDIFVHLDDLQKAGVTKEVLKTAKQGSQIRFQF 382 Query: 56 ---YVQNDANGKYSAENLKLV 73 A LKL+ Sbjct: 383 NCMVYVGKYKKSRKAVELKLL 403 >gi|255965396|gb|ACU45003.1| cold shock protein [Pfiesteria piscicida] Length = 80 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G++K YNP KG+GFI G DVF+H V G G +V+++ ++ Sbjct: 1 MSCQGTVKSYNPAKGWGFI-----DYEGQDVFIH---VKDCGGAAPVAGDVVSFEVEKDP 52 Query: 61 -ANGKYSAENLK 71 G A ++ Sbjct: 53 VRGGAMKASSVT 64 >gi|284163722|ref|YP_003402001.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] gi|284013377|gb|ADB59328.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] Length = 64 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G++ ++N GYGFI E + E DVF H V G +L EG + +D Q Sbjct: 1 MAKGNVDFFNDTGGYGFIDTEDADE---DVFFHMEDV---GGPDLEEGTEIEFDIEQAPK 54 Query: 62 NGKYSAENLKLV 73 + A N+ + Sbjct: 55 GPR--ATNVTRL 64 >gi|5714743|gb|AAD48060.1|AF171925_1 cold shock protein A [Rhodococcus sp. 5/14] Length = 57 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41 WYN DKG+G ITP+ + D F+H +A+ S Sbjct: 4 WYNADKGFGCITPD---DGSKDCFVHFTALRSE 33 >gi|297709000|ref|XP_002831236.1| PREDICTED: cold shock domain-containing protein C2-like isoform 1 [Pongo abelii] Length = 222 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 139 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 193 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 194 QKFQAVEVVL 203 >gi|119580846|gb|EAW60442.1| cold shock domain containing C2, RNA binding [Homo sapiens] Length = 222 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 139 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 193 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 194 QKFQAVEVVL 203 >gi|76802455|ref|YP_327463.1| cold shock protein [Natronomonas pharaonis DSM 2160] gi|76558320|emb|CAI49909.1| probable cold shock protein [Natronomonas pharaonis DSM 2160] Length = 68 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G + ++N GYGFI T +G + +DVF H V G +LTEG V +D ++ Sbjct: 1 MANGKVDFFNDTGGYGFISTDDGDLDDDEDVFFHMEDV---GGEDLTEGTEVEFDI-ESS 56 Query: 61 ANGKYSAENLKL 72 G +A ++L Sbjct: 57 PKGPRAANVVRL 68 >gi|6114756|emb|CAA62001.2| PIPPin protein [Rattus norvegicus] Length = 227 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 144 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 198 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 199 QKFQAVEVVL 208 >gi|298113034|gb|ADI58623.1| AsuR4 [Streptomyces nodosus subsp. asukaensis] Length = 141 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 8/76 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59 + G + ++ +GYGFI+P+ G+DVFLH + + + + G V ++ Sbjct: 1 MVSGRVVRFDGTRGYGFISPDH---GGEDVFLHVNDMLIPESYVHT---GTAVEFEIEDG 54 Query: 60 DANGKYSAENLKLVPK 75 D K S+ L P Sbjct: 55 DRGLKASSVRLAEGPD 70 >gi|257454036|ref|ZP_05619310.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] gi|257448514|gb|EEV23483.1| cold-shock DNA-binding domain protein [Enhydrobacter aerosaccus SK60] Length = 213 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++G I + DKG+GFI + +F H S + L E V ++ Q + Sbjct: 4 YQGKIIRWQDDKGFGFIEQTDNNWQDPAIFFHISEYRANQRPVLNE--AVVFEIGQG-RD 60 Query: 63 GKYSAENLK 71 GK A N++ Sbjct: 61 GKPCAVNVQ 69 >gi|86133588|ref|ZP_01052170.1| conserved hypothetical protein [Polaribacter sp. MED152] gi|85820451|gb|EAQ41598.1| conserved hypothetical protein [Polaribacter sp. MED152] Length = 150 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V +G + +++ KG+GFI +++G+ F H S + + + E VT++ + Sbjct: 88 VRKGKVNFFDSSKGFGFII---DSDNGEKYFTHVSGL----IDTIAENDKVTFELEKGMR 140 Query: 62 NGKYSAENLKLV 73 +A +K V Sbjct: 141 G--MNAVKVKKV 150 >gi|313205948|ref|YP_004045125.1| colD-shock DNA-binding protein family [Riemerella anatipestifer DSM 15868] gi|312445264|gb|ADQ81619.1| cold-shock DNA-binding protein family [Riemerella anatipestifer DSM 15868] gi|315022261|gb|EFT35289.1| cold-shock DNA-binding domain protein [Riemerella anatipestifer RA-YM] gi|325336612|gb|ADZ12886.1| cold shock protein, putative DNA-binding protein [Riemerella anatipestifer RA-GD] Length = 145 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++G++ +YN +KGYGFI S ES +F+H + ++ L + V+Y+ + Sbjct: 83 NKGTVTFYNEEKGYGFINDHRSKES---IFVHANQLS----EVLKKDDKVSYE-KEKGPK 134 Query: 63 GKYSAENLKL 72 G + +K+ Sbjct: 135 GYVATNVIKI 144 >gi|91094659|ref|XP_972255.1| PREDICTED: similar to CG9705 CG9705-PA [Tribolium castaneum] gi|270016464|gb|EFA12910.1| hypothetical protein TcasGA2_TC006980 [Tribolium castaneum] Length = 121 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63 G IK + +KG+GFITPE + +D+F+H S + + G V Y Sbjct: 44 GEIKSFCREKGHGFITPE---DGSEDIFVHISDIEDEYIP--IPGDRVKYQLCPIPPKFE 98 Query: 64 KYSAENLKLV 73 K+ A ++ +V Sbjct: 99 KHQAVHVHIV 108 >gi|325108943|ref|YP_004270011.1| cold-shock DNA-binding protein family [Planctomyces brasiliensis DSM 5305] gi|324969211|gb|ADY59989.1| cold-shock DNA-binding protein family [Planctomyces brasiliensis DSM 5305] Length = 66 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G IK DKG+GFI + D+F H SA+ L GQ V Y+ + Sbjct: 1 MPEGKIKKLVADKGFGFIQGDRG-----DLFFHLSALQDFQFEALQVGQAVNYEEEEGPK 55 Query: 62 NGKYSAENLKLV 73 + A ++ +V Sbjct: 56 GPR--AVSVMVV 65 >gi|145284582|gb|ABP52038.1| cold shock protein [Psychrobacter sp. BJ3] Length = 27 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N +KG+GFI P+ DVF+H Sbjct: 1 GLVKWFNAEKGFGFIAPDSGD---PDVFVH 27 >gi|158315982|ref|YP_001508490.1| cold-shock DNA-binding domain-containing protein [Frankia sp. EAN1pec] gi|158111387|gb|ABW13584.1| cold-shock DNA-binding domain protein [Frankia sp. EAN1pec] Length = 146 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQND 60 + G + ++ +GYGF+ P ++ G+DVFLH + + +L G ++ ++ ++D Sbjct: 1 MSTGKVLRFDHVRGYGFLAP---SDGGEDVFLHANDLLVE--KSLVVPGVVMEFEVEESD 55 Query: 61 ANGKYSAENL 70 K SA + Sbjct: 56 RGRKASAARI 65 >gi|196051108|gb|ACG68722.1| cold shock protein [uncultured bacterium] Length = 39 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 VF+H A+ G +LTEGQ V Y V+ AE++ Sbjct: 1 VFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG--LQAEDV 38 >gi|239981577|ref|ZP_04704101.1| putative DNA binding protein [Streptomyces albus J1074] Length = 159 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G I ++ +GYGFI P E G+DVF+H + + G+ V + + + Sbjct: 1 MLKTGKILRFDEVRGYGFIVP---NEGGEDVFMHANDLVDEKYL-YQSGREVEF-FEEMG 55 Query: 61 ANGKYSAENLKLVPKSS 77 G A ++LV +SS Sbjct: 56 EKGP-KASQIRLVYRSS 71 >gi|118615949|ref|YP_904281.1| DNA-binding protein [Mycobacterium ulcerans Agy99] gi|118568059|gb|ABL02810.1| DNA-binding protein [Mycobacterium ulcerans Agy99] Length = 135 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL--TEGQLVTYDYVQ 58 M G I ++ +GYGFI P+ G+DVFLH + + L G V++D + Sbjct: 1 MRGTGRIVRFDDVRGYGFIAPDS---GGEDVFLHANDLD---FDRLLAKRGTRVSFDI-E 53 Query: 59 NDANGKYSAENL 70 + GK++ L Sbjct: 54 DGPRGKFATAVL 65 >gi|296207137|ref|XP_002750515.1| PREDICTED: protein lin-28 homolog A-like [Callithrix jacchus] Length = 209 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Query: 5 GSIKWYNPDKGYGF---ITPEGSTESGD-DVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 G KW N G+GF I G + +VF+H+ + G +L EG+ + + + ++ Sbjct: 42 GICKWLNVHMGFGFLSMIARAGDALNPPVEVFVHQGKLHMKGFRSLKEGEAMEFTFKKSA 101 Query: 61 AN 62 Sbjct: 102 KG 103 >gi|164518139|emb|CAP49095.1| putative integron gene cassette protein [uncultured bacterium] Length = 185 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%) Query: 1 MVHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G++ KW N D+G+GFI G+ E +F+H S + GQLV++ Sbjct: 6 MQIHGNVTKW-NDDRGFGFIEAAGTREE---LFVHISEFPRGERPQV--GQLVSFTVAV- 58 Query: 60 DANGKYSAENLKL 72 +GK A + L Sbjct: 59 -KDGKKRAIAVSL 70 >gi|30248726|ref|NP_840796.1| cold shock DNA-binding domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30180321|emb|CAD84628.1| Cold-shock DNA-binding domain [Nitrosomonas europaea ATCC 19718] Length = 204 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQN 59 M ++G I + DKG+GF+TP G G+ +F+H ++ +S EG +LVTY+ Sbjct: 1 MRYQGRITTWKDDKGFGFVTPNG---GGEQIFVHINSFSSRQRR--PEGNELVTYELTV- 54 Query: 60 DANGKYSAENLKLVPKS 76 D+ G+ A+ + V + Sbjct: 55 DSKGRSQAKAVAFVGEQ 71 >gi|322369014|ref|ZP_08043581.1| cold-shock DNA-binding domain protein [Haladaptatus paucihalophilus DX253] gi|320551745|gb|EFW93392.1| cold-shock DNA-binding domain protein [Haladaptatus paucihalophilus DX253] Length = 64 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++N GYGFI + + E DVF H V G +LTEG + +D Q Sbjct: 1 MANGKVDFFNDTGGYGFIETDDADE---DVFFHMEDV---GGEDLTEGTEIEFDIEQAPK 54 Query: 62 NGKYSAENL 70 + A+N+ Sbjct: 55 GPR--AKNV 61 >gi|217971871|ref|YP_002356622.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS223] gi|217497006|gb|ACK45199.1| cold-shock DNA-binding domain protein [Shewanella baltica OS223] Length = 219 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 ++ RG ++W N +KG+GFI PE + DVF+H S + + G + + + Sbjct: 2 LMDRGVLVRW-NDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILFQ-TEV 56 Query: 60 DANGKYSAE 68 +GK A Sbjct: 57 QNDGKRKAV 65 >gi|312129178|ref|YP_003996518.1| cold-shock DNA-binding protein family [Leadbetterella byssophila DSM 17132] gi|311905724|gb|ADQ16165.1| cold-shock DNA-binding protein family [Leadbetterella byssophila DSM 17132] Length = 146 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 10/72 (13%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G + ++ DKGYGFIT E + E +F+H + + L EG VT++ ++D Sbjct: 83 RKKGVVAYF-SDKGYGFITEERTKER---IFVHTNDLKVE----LREGDKVTFETERSDR 134 Query: 62 NGKYSAENLKLV 73 A N++ V Sbjct: 135 G--LKAINVEKV 144 >gi|259507144|ref|ZP_05750044.1| cold-shock domain family protein [Corynebacterium efficiens YS-314] gi|259165267|gb|EEW49821.1| cold-shock domain family protein [Corynebacterium efficiens YS-314] Length = 122 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 7/68 (10%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KWY+P++G+GF+ S G+D F+ V G+ L +GQ + +D+ Sbjct: 1 MKWYDPERGFGFV----SNPGGEDCFVG-KQVLPKGVTELHQGQRIEFDFAAGRKG--PQ 53 Query: 67 AENLKLVP 74 A +K++ Sbjct: 54 ALRVKVLE 61 >gi|183980071|ref|YP_001848362.1| DNA-binding protein [Mycobacterium marinum M] gi|183173397|gb|ACC38507.1| DNA-binding protein [Mycobacterium marinum M] Length = 135 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL--TEGQLVTYDYVQ 58 M G I ++ +GYGFI P+ G+DVFLH + + L G V++D + Sbjct: 1 MRGTGRIVRFDDVRGYGFIAPDS---GGEDVFLHANDLD---FDRLLAKRGTRVSFDI-E 53 Query: 59 NDANGKYSAENL 70 + GK++ L Sbjct: 54 DGPRGKFATAVL 65 >gi|218458034|ref|ZP_03498125.1| cold-shock DNA-binding domain protein [Rhizobium etli Kim 5] Length = 57 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 16/23 (69%) Query: 2 VHRGSIKWYNPDKGYGFITPEGS 24 + G++KW+N KG+GFI P+ Sbjct: 35 MSTGTVKWFNATKGFGFIQPDDG 57 >gi|326799533|ref|YP_004317352.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] gi|326550297|gb|ADZ78682.1| cold-shock DNA-binding domain protein [Sphingobacterium sp. 21] Length = 59 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 11/68 (16%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQNDANGKY 65 +K++N KG+GFITP T G + F+H S GL + + + V++D Q Sbjct: 2 VKFFNETKGFGFITP---TYGGHEFFVH-----SPGLKDRIRKNDDVSFDVEQGQKG--L 51 Query: 66 SAENLKLV 73 +A ++KL+ Sbjct: 52 NAVDVKLI 59 >gi|213966424|ref|ZP_03394602.1| cold-shock DNA-binding domain protein [Corynebacterium amycolatum SK46] gi|213950944|gb|EEB62348.1| cold-shock DNA-binding domain protein [Corynebacterium amycolatum SK46] Length = 143 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 7/74 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++WY+ D+G+GF+ S G+DV++ ++ V G+ L GQ + YDY D Sbjct: 1 MPIGKVRWYDKDRGFGFV----SNPDGEDVYIGKN-VLPKGVEELVTGQRLEYDYA--DG 53 Query: 62 NGKYSAENLKLVPK 75 A +K++ + Sbjct: 54 RPGPQALRIKVLDE 67 >gi|86130352|ref|ZP_01048952.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] gi|85819027|gb|EAQ40186.1| cold shock domain protein CspD [Dokdonia donghaensis MED134] Length = 148 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 8/62 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQND 60 + G +++++ KG+GFI + E F+H S + L EG V+Y+ + Sbjct: 84 IKTGFVEFFDSSKGFGFIKDADTPEK---YFVHISEVIEGE----LKEGNKVSYEIERGQ 136 Query: 61 AN 62 Sbjct: 137 KG 138 >gi|160873811|ref|YP_001553127.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS195] gi|160859333|gb|ABX47867.1| cold-shock DNA-binding domain protein [Shewanella baltica OS195] gi|315266036|gb|ADT92889.1| Excalibur domain protein [Shewanella baltica OS678] Length = 219 Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 ++ RG ++W N +KG+GFI PE + DVF+H S + + G + + + Sbjct: 2 LMDRGVLVRW-NDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILFQ-TEV 56 Query: 60 DANGKYSAE 68 +GK A Sbjct: 57 QNDGKRKAV 65 >gi|126343688|ref|XP_001363729.1| PREDICTED: similar to Cold shock domain containing C2, RNA binding [Monodelphis domestica] Length = 154 Score = 52.3 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE TE D+F+H S + + EG VTY N Sbjct: 71 KGVCKQFSRSQGHGFITPENGTE---DIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 125 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 126 QKFQAVEVVL 135 >gi|269914112|ref|NP_663448.2| cold shock domain-containing protein C2 [Mus musculus] gi|26324880|dbj|BAC26194.1| unnamed protein product [Mus musculus] gi|74208901|dbj|BAE21201.1| unnamed protein product [Mus musculus] Length = 154 Score = 52.3 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 71 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKICPIPPKN 125 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 126 QKFQAVEVVL 135 >gi|46580267|ref|YP_011075.1| cold shock domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449684|gb|AAS96334.1| cold shock domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233750|gb|ADP86604.1| Excalibur domain protein [Desulfovibrio vulgaris RCH1] Length = 178 Score = 52.3 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 12/73 (16%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN---LTE-GQLVTYDY 56 M +G I +N ++G+GFI+P+ + VF H SA + L E G+ V Y Sbjct: 1 MFDQGKIAQWNDERGFGFISPD---DGSPRVFAHISA-----FRSRHPLPEVGERVLYYL 52 Query: 57 VQNDANGKYSAEN 69 G ++ Sbjct: 53 GPPSPKGSRASVV 65 >gi|257051748|ref|YP_003129581.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM 12940] gi|256690511|gb|ACV10848.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM 12940] Length = 64 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + +++ GYGFI + ++ DDVF H V+ +L EGQ + +D Q + Sbjct: 1 MANGKVDFFHDTGGYGFIE---TADADDDVFFHMEDVSG---PDLEEGQDIEFDIEQAE- 53 Query: 62 NGKYSAENLK 71 G + ++ Sbjct: 54 KGPRATNVVR 63 >gi|21224745|ref|NP_630524.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|4158185|emb|CAA22748.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 162 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA--VASAGLFNLTEGQLVTYDYVQN 59 + G + ++ +GYGFI PE + G+DVFLH + + + + G +V ++ Sbjct: 21 MVAGRVVRFDGTRGYGFIAPE---DGGEDVFLHVNDLLIPEESVRS---GLVVEFEVESG 74 Query: 60 DANGKYS 66 + K S Sbjct: 75 ERGLKAS 81 >gi|145284586|gb|ABP52040.1| cold shock protein [Psychrobacter sp. BJ3] gi|145284602|gb|ABP52048.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 27 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G++KW+N KG+GFI + G DVF+H Sbjct: 1 GTVKWFNEAKGFGFIAQD---NGGQDVFVH 27 >gi|255025943|ref|ZP_05297929.1| major cold-shock protein [Listeria monocytogenes FSL J2-003] Length = 28 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 4/32 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFL 33 + G++KW+N +KG+GFI E GDDVF+ Sbjct: 1 MQTGTVKWFNSEKGFGFIEVE----GGDDVFV 28 >gi|32129843|sp|Q91YQ3|CSDC2_MOUSE RecName: Full=Cold shock domain-containing protein C2; AltName: Full=RNA-binding protein PIPPin gi|16359300|gb|AAH16109.1| Cold shock domain containing C2, RNA binding [Mus musculus] gi|148672599|gb|EDL04546.1| cold shock domain containing C2, RNA binding [Mus musculus] Length = 154 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 71 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKICPIPPKN 125 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 126 QKFQAVEVVL 135 >gi|195016139|ref|XP_001984348.1| GH16406 [Drosophila grimshawi] gi|193897830|gb|EDV96696.1| GH16406 [Drosophila grimshawi] Length = 1062 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%) Query: 3 HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 R ++ + KG +GF+ E E G +F H S V + + L G V + V N Sbjct: 946 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGSTVA-LHPGDTVEFSVVTNQR 999 Query: 62 NGKYSAENL 70 NGK SA N+ Sbjct: 1000 NGKSSACNV 1008 Score = 40.7 bits (95), Expect = 0.076, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 206 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 261 Query: 76 S 76 Sbjct: 262 E 262 >gi|292655387|ref|YP_003535284.1| cold shock protein [Haloferax volcanii DS2] gi|291371490|gb|ADE03717.1| cold shock protein [Haloferax volcanii DS2] Length = 64 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G + ++ GYGFI + + VF H + +L EGQ V +D + D Sbjct: 1 MAKGKVAFFKSSGGYGFIETDDHDDD---VFFHMEDIEG---PDLEEGQEVEFDIEEADK 54 Query: 62 NGKYSAENLKLV 73 + A N+ + Sbjct: 55 GPR--ATNVTRL 64 >gi|152986409|ref|YP_001348696.1| hypothetical protein PSPA7_3336 [Pseudomonas aeruginosa PA7] gi|150961567|gb|ABR83592.1| hypothetical protein PSPA7_3336 [Pseudomonas aeruginosa PA7] Length = 238 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 WY+ DKG+GFI P G+++FLH SA L G V + DA G+ AE Sbjct: 21 WYD-DKGFGFIQP---KAGGEEIFLHISAFRGD-RRPLQ-GDQVWF-LASQDARGRLRAE 73 Query: 69 NLKL 72 +L Sbjct: 74 RARL 77 >gi|89071109|ref|ZP_01158312.1| cold shock protein CspA [Oceanicola granulosus HTCC2516] gi|89043357|gb|EAR49578.1| cold shock protein CspA [Oceanicola granulosus HTCC2516] Length = 40 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 H SAV +GL +L + Q VT+D + +G+ SA NL L Sbjct: 2 HISAVERSGLTDLRDDQKVTFDI-EPGRDGRESAVNLAL 39 >gi|92116742|ref|YP_576471.1| cold-shock DNA-binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91799636|gb|ABE62011.1| putative cold-shock DNA-binding domain protein [Nitrobacter hamburgensis X14] Length = 66 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 H SAV AG+ + E Q V++D V + GK +AENL+ Sbjct: 27 HISAVERAGVSSFHEWQNVSFDIVVDRRTGKSAAENLR 64 >gi|333030557|ref|ZP_08458618.1| Cold-shock protein DNA-binding [Bacteroides coprosuis DSM 18011] gi|332741154|gb|EGJ71636.1| Cold-shock protein DNA-binding [Bacteroides coprosuis DSM 18011] Length = 147 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + ++N KG+GFI + S + F H S + E VT++ Q Sbjct: 86 TGRVDFFNDAKGFGFIKDQASVNT---YFFHISNAPED----IKENNKVTFELEQGPRG- 137 Query: 64 KYSAENLKLV 73 +A N+K++ Sbjct: 138 -MNAVNIKII 146 >gi|316971587|gb|EFV55344.1| tRNA-specific adenosine deaminase 2 [Trichinella spiralis] Length = 311 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 VH G ++++ ++G+G+ITP +G+D+F+H S V + +G VTY Sbjct: 215 VHYGRVRYFCRERGHGYITPLDQNPAGEDIFVHISDVEGD--YAPHDGDEVTY 265 >gi|282866184|ref|ZP_06275231.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] gi|282558968|gb|EFB64523.1| cold-shock DNA-binding domain protein [Streptomyces sp. ACTE] Length = 143 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 20/82 (24%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHR-------SAVASAGLFNLTEGQLVTY 54 + G + ++ +GYGFI PE G+DVF+H SAV + G +V + Sbjct: 1 MAAGRVIRFDGMRGYGFIAPEH---GGEDVFMHVNDLLIPESAVRA--------GLMVEF 49 Query: 55 DYVQNDANGKYSAENLKLVPKS 76 + D A ++L ++ Sbjct: 50 EIEDGDRG--LKASEVRLASEA 69 >gi|152999199|ref|YP_001364880.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS185] gi|151363817|gb|ABS06817.1| putative cold-shock DNA-binding domain protein [Shewanella baltica OS185] Length = 217 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 ++ RG ++W N +KG+GFI PE + DVF+H S + + G + Y + Sbjct: 2 LMDRGVLVRW-NDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILYQ-TEV 56 Query: 60 DANGKYSAE 68 +GK A Sbjct: 57 QNDGKRKAV 65 >gi|126175891|ref|YP_001052040.1| cold-shock DNA-binding domain-containing protein [Shewanella baltica OS155] gi|125999096|gb|ABN63171.1| cold-shock DNA-binding protein family [Shewanella baltica OS155] Length = 203 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 ++ RG ++W N +KG+GFI PE + DVF+H S + + G + + + Sbjct: 2 LMDRGVLVRW-NDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILFQ-TEV 56 Query: 60 DANGKYSAE 68 +GK A Sbjct: 57 QNDGKRKAV 65 >gi|326803763|ref|YP_004321581.1| putative transcriptional repressor activity CueR [Aerococcus urinae ACS-120-V-Col10a] gi|326650444|gb|AEA00627.1| putative transcriptional repressor activity CueR [Aerococcus urinae ACS-120-V-Col10a] Length = 67 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G +K Y+ +GYGFI +VF+HR+A+ +A + L+ ++ Sbjct: 1 MYQGILKSYDEKRGYGFIQVLHPYFE-KEVFIHRTALQAADYEKMLVNDLLAFEIAWGQR 59 Query: 62 NGKYSAENLK 71 A N++ Sbjct: 60 G--PQAVNVQ 67 >gi|5441543|emb|CAB46826.1| DNA binding protein [Canis lupus familiaris] Length = 96 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 8/63 (12%) Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYS 66 N GYGFI ++ +DVF+H++A+ L ++ +G+ V +D V+ + G + Sbjct: 1 NVRNGYGFI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVQFDVVEGE-KGAEA 56 Query: 67 AEN 69 A Sbjct: 57 ANV 59 >gi|313127432|ref|YP_004037702.1| cold-shock DNA-binding protein family [Halogeometricum borinquense DSM 11551] gi|312293797|gb|ADQ68257.1| cold-shock DNA-binding protein family [Halogeometricum borinquense DSM 11551] Length = 64 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + ++N GYGFI E E DVF H V G +L EG + ++ ++ Sbjct: 1 MAEGKVDFFNDTGGYGFIETEDHDE---DVFFHMEDV---GGPDLEEGTEIEFEI-EDAP 53 Query: 62 NGKYSAENLKL 72 G + +L Sbjct: 54 KGPRAKNVTRL 64 >gi|125977582|ref|XP_001352824.1| GA21978 [Drosophila pseudoobscura pseudoobscura] gi|195169856|ref|XP_002025730.1| GL20690 [Drosophila persimilis] gi|54641575|gb|EAL30325.1| GA21978 [Drosophila pseudoobscura pseudoobscura] gi|194109223|gb|EDW31266.1| GL20690 [Drosophila persimilis] Length = 142 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN- 62 G +K ++ KG+GFI P T G+DVF H S + + G V Y Sbjct: 56 TGVVKSFSRSKGHGFIIP---TAGGEDVFCHVSDIEGE--YVPMPGDEVKYRLCAIPPKY 110 Query: 63 GKYSAENLKL 72 K+ A ++++ Sbjct: 111 EKHQAVHVQI 120 >gi|317506969|ref|ZP_07964738.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254727|gb|EFV14028.1| cold-shock DNA-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 166 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS----AVASAGLFNLTEGQLVTYDYV 57 + G + ++ +G+GF+ P+ G+DVF+H + A+ L G ++ ++ Sbjct: 1 MSSGKLVHFDAVRGFGFVAPDV---GGEDVFIHVNDFEEAIVDE--RLLRPGAVLEFEVE 55 Query: 58 QNDANGKYSAENLKLVPKS 76 + A N++ V ++ Sbjct: 56 RGGRG--LKAVNVRFVREA 72 >gi|157124890|ref|XP_001660573.1| hypothetical protein AaeL_AAEL010018 [Aedes aegypti] gi|108873813|gb|EAT38038.1| hypothetical protein AaeL_AAEL010018 [Aedes aegypti] Length = 982 Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF+ + E G +F H S V G L G V + V N NGK SA N Sbjct: 866 DSVKGLFGFL--DFEVEEGKKLFFHMSEVQGGGC--LYPGDSVEFSIVTNQRNGKTSACN 921 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S + L G V + +Q GK A N+ +P Sbjct: 317 FGFIER---ADVVKEIFFHFS--ETDNTIELRPGDDVEF-IIQTRNQGKEVACNIARLPP 370 Query: 76 SS 77 S Sbjct: 371 GS 372 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + +L G V ++ + GK A + + Sbjct: 159 YGFIQ---CCERQARLFFHFSQFGGT-IEHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 214 Query: 76 S 76 Sbjct: 215 E 215 >gi|194748709|ref|XP_001956787.1| GF10107 [Drosophila ananassae] gi|190624069|gb|EDV39593.1| GF10107 [Drosophila ananassae] Length = 1043 Score = 51.5 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%) Query: 3 HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 R ++ + KG +GF+ E E G +F H S V + + L G V + V N Sbjct: 927 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGSTVA-LHPGDTVEFSVVTNQR 980 Query: 62 NGKYSAENL 70 NGK SA N+ Sbjct: 981 NGKSSACNV 989 Score = 40.3 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 196 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 251 Query: 76 S 76 Sbjct: 252 E 252 >gi|170038774|ref|XP_001847223.1| cold shock domain-containing protein E1 [Culex quinquefasciatus] gi|167882469|gb|EDS45852.1| cold shock domain-containing protein E1 [Culex quinquefasciatus] Length = 954 Score = 51.5 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV--QNDANGKYSA 67 + KG +GF+ + E G +F H S V G +L G V + V Q NGK SA Sbjct: 836 DSVKGLFGFL--DFEVEEGKKLFFHMSEVQGGG--SLYPGDSVEFSIVTNQASRNGKTSA 891 Query: 68 ENLKLVPK 75 N+ VP Sbjct: 892 CNMIKVPD 899 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S + L G V + +Q GK A N+ +P Sbjct: 300 FGFIER---ADVVKEIFFHFS--ETDNTIELRPGDDVEF-IIQTRNQGKEVACNIARLPP 353 Query: 76 SS 77 S Sbjct: 354 GS 355 >gi|145284588|gb|ABP52041.1| cold shock protein [Psychrobacter sp. BJ3] Length = 27 Score = 51.5 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N +KG+GFI P+ DVF+H Sbjct: 1 GQVKWFNAEKGFGFIAPDSGD---PDVFVH 27 >gi|73959197|ref|XP_852743.1| PREDICTED: similar to calcium-regulated heat-stable protein (24kD) [Canis familiaris] Length = 224 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 V++G K + KG+GFITP + G D+FLH S V + EG VTY Sbjct: 139 VYKGVCKCFCRSKGHGFITP---ADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPP 193 Query: 61 ANGKYSAENLKL 72 N K A + + Sbjct: 194 KNEKLQAVEVVI 205 >gi|291235125|ref|XP_002737496.1| PREDICTED: calcium-regulated heat-stable protein (24kD)-like [Saccoglossus kowalevskii] Length = 130 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY-DYVQND 60 V +G++K++ KG+GFIT + E+ +++F+H S + + + G VTY + + Sbjct: 45 VKKGTVKYFCRHKGHGFITQ--AEENAEELFVHISDIEGEYIPVV--GDQVTYKECLIPP 100 Query: 61 ANGKYSAENL 70 K A + Sbjct: 101 KKTKTQAVEV 110 >gi|78048088|ref|YP_364263.1| hypothetical protein XCV2532 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036518|emb|CAJ24209.1| putative membrane protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 204 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D Sbjct: 1 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFARQ-TRRPRDGEIITY-AIERD 55 Query: 61 ANGKYSAENLK 71 A+ + +A ++ Sbjct: 56 AHKRLNATQVR 66 >gi|124505825|ref|XP_001351026.1| cold-shock protein, putative [Plasmodium falciparum 3D7] gi|23510669|emb|CAD49054.1| cold-shock protein, putative [Plasmodium falciparum 3D7] Length = 150 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 13/59 (22%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G++ ++ KGYGFI P + G D+F+H + + Q T++ + Sbjct: 31 TGNVIMFDKRKGYGFIKP---NDGGPDIFVHYTDIC----------QSRTFEVTNEEKK 76 >gi|327272546|ref|XP_003221045.1| PREDICTED: cold shock domain-containing protein C2-like [Anolis carolinensis] Length = 153 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE TE D+F+H S + + EG +VTY N Sbjct: 70 KGVCKQFSRSQGHGFITPENGTE---DIFVHVSDIEGE--YVPVEGDVVTYKICPIPPKN 124 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 125 QKFQAVEVVL 134 >gi|157963490|ref|YP_001503524.1| cold-shock DNA-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|157848490|gb|ABV88989.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC 700345] Length = 188 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 ++ RG ++W N ++G+GFI PE T + DVF+H SA+ + G + + + Sbjct: 2 LMERGVLVRW-NEERGFGFIKPE--TTNAKDVFIHISALKHMARKPVV-GDQILFHS-ER 56 Query: 60 DANGKYSA 67 A+GK A Sbjct: 57 QADGKLKA 64 >gi|149743340|ref|XP_001500375.1| PREDICTED: similar to RNA-binding protein pippin [Equus caballus] Length = 153 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 70 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 124 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 125 QKFQAVEVVL 134 >gi|304411240|ref|ZP_07392855.1| Excalibur domain protein [Shewanella baltica OS183] gi|307306535|ref|ZP_07586278.1| Excalibur domain protein [Shewanella baltica BA175] gi|304350433|gb|EFM14836.1| Excalibur domain protein [Shewanella baltica OS183] gi|306910826|gb|EFN41254.1| Excalibur domain protein [Shewanella baltica BA175] Length = 219 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 ++ RG ++W N +KG+GFI PE + DVF+H S + + G + + + Sbjct: 2 LMDRGVLVRW-NDEKGFGFIQPE--KNAAQDVFIHISVLKKMARKPIV-GDSILFQ-TEV 56 Query: 60 DANGKYSAE 68 +GK A Sbjct: 57 QNDGKRKAV 65 >gi|195125563|ref|XP_002007247.1| GI12487 [Drosophila mojavensis] gi|193918856|gb|EDW17723.1| GI12487 [Drosophila mojavensis] Length = 1037 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%) Query: 3 HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 R ++ + KG +GF+ E E G +F H S V + L G V + V N Sbjct: 921 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 974 Query: 62 NGKYSAENL 70 NGK SA N+ Sbjct: 975 NGKSSACNV 983 Score = 40.3 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + +L G V ++ + GK A + + Sbjct: 179 YGFIQ---CCERQARLFFHFSQFTGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 234 Query: 76 S 76 Sbjct: 235 E 235 >gi|198466716|ref|XP_002135245.1| GA23356 [Drosophila pseudoobscura pseudoobscura] gi|198150727|gb|EDY73872.1| GA23356 [Drosophila pseudoobscura pseudoobscura] Length = 1036 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Query: 3 HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 R ++ + KG +GF+ E E G +F H S V + L G V + V N Sbjct: 920 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 973 Query: 62 NGKYSAENLKLV 73 NGK SA N+ + Sbjct: 974 NGKSSACNVVKI 985 Score = 40.3 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 188 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 243 Query: 76 S 76 Sbjct: 244 E 244 >gi|281485622|ref|NP_001164013.1| cold shock domain-containing protein C2 [Rattus norvegicus] gi|293348837|ref|XP_001077363.2| PREDICTED: cold shock domain containing C2, RNA binding [Rattus norvegicus] gi|293360735|ref|XP_345861.4| PREDICTED: cold shock domain-containing protein C2 [Rattus norvegicus] gi|32129826|sp|Q63430|CSDC2_RAT RecName: Full=Cold shock domain-containing protein C2; AltName: Full=RNA-binding protein PIPPin gi|149065816|gb|EDM15689.1| cold shock domain containing C2, RNA binding [Rattus norvegicus] Length = 154 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 71 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 125 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 126 QKFQAVEVVL 135 >gi|301787827|ref|XP_002929327.1| PREDICTED: cold shock domain-containing protein C2-like [Ailuropoda melanoleuca] gi|281340937|gb|EFB16521.1| hypothetical protein PANDA_019484 [Ailuropoda melanoleuca] Length = 153 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 70 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 124 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 125 QKFQAVEVVL 134 >gi|239944867|ref|ZP_04696804.1| putative DNA binding protein [Streptomyces roseosporus NRRL 15998] gi|239991333|ref|ZP_04711997.1| putative DNA binding protein [Streptomyces roseosporus NRRL 11379] Length = 141 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 14/83 (16%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQNDAN 62 G I ++ +GYGFI P+ E +DVF+H + + L G+ V Y D Sbjct: 2 TGKILRFDEVRGYGFIAPD---EGDEDVFMHANDLLEEKY--LYQAGRRVEYFLESGDKG 56 Query: 63 GK--------YSAENLKLVPKSS 77 K +A + VP+SS Sbjct: 57 PKAGEIRLVRQAAAPVSRVPRSS 79 >gi|195491191|ref|XP_002093456.1| GE21305 [Drosophila yakuba] gi|194179557|gb|EDW93168.1| GE21305 [Drosophila yakuba] Length = 1044 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%) Query: 3 HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 R ++ + KG +GF+ E E G +F H S V + + L G V + V N Sbjct: 928 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGSTVA-LHPGDTVEFSVVTNQR 981 Query: 62 NGKYSAENL 70 NGK SA N+ Sbjct: 982 NGKSSACNV 990 Score = 40.3 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 203 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 258 Query: 76 S 76 Sbjct: 259 E 259 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 8/66 (12%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71 +GFI E VF H S L GQ V Y +N AEN++ Sbjct: 780 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 835 Query: 72 LVPKSS 77 ++PK+S Sbjct: 836 MLPKNS 841 >gi|145537626|ref|XP_001454524.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124422290|emb|CAK87127.1| unnamed protein product [Paramecium tetraurelia] Length = 360 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43 G +K+++ K YGFI + DVF+H + AG+ Sbjct: 265 RETGKLKFFDEQKSYGFIVLDS---DNSDVFVHLDDLQRAGI 303 >gi|308803845|ref|XP_003079235.1| unnamed protein product [Ostreococcus tauri] gi|116057690|emb|CAL53893.1| unnamed protein product [Ostreococcus tauri] Length = 73 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 16/59 (27%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++KW+N + +DVF+H+SA+ G + E V ++ + G Sbjct: 10 GTVKWFN-------------FDGSEDVFVHQSALTMDGFRSCWE---VRHEAAHSKRRG 52 >gi|54113555|gb|AAV29411.1| NT02FT1329 [synthetic construct] Length = 143 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62 +G++K+YN DKGYGFI S ES D F S + + G V ++ Q+ Sbjct: 2 QGTVKFYNKDKGYGFI---YSEESEKDFF--FS-INDWKNPTVPNGSDDVEFEVAQSKKG 55 Query: 63 GKYSAENLKLVPKSSN 78 A N+KL+ + + Sbjct: 56 --EKAINIKLLKSAED 69 >gi|24307959|ref|NP_055275.1| cold shock domain-containing protein C2 [Homo sapiens] gi|297709002|ref|XP_002831237.1| PREDICTED: cold shock domain-containing protein C2-like isoform 2 [Pongo abelii] gi|32129852|sp|Q9Y534|CSDC2_HUMAN RecName: Full=Cold shock domain-containing protein C2; AltName: Full=RNA-binding protein PIPPin gi|5304854|emb|CAB46024.1| cold shock domain containing C2, RNA binding [Homo sapiens] gi|5931606|dbj|BAA84704.1| RNA-binding protein PIPPin [Homo sapiens] gi|45501284|gb|AAH67113.1| CSDC2 protein [Homo sapiens] gi|47678445|emb|CAG30343.1| dJ347H13.2 [Homo sapiens] gi|57997216|emb|CAD39079.2| hypothetical protein [Homo sapiens] gi|109451154|emb|CAK54438.1| CSDC2 [synthetic construct] gi|109451732|emb|CAK54737.1| CSDC2 [synthetic construct] gi|190689775|gb|ACE86662.1| cold shock domain containing C2, RNA binding protein [synthetic construct] gi|190691143|gb|ACE87346.1| cold shock domain containing C2, RNA binding protein [synthetic construct] gi|306921241|dbj|BAJ17700.1| cold shock domain containing C2, RNA binding [synthetic construct] Length = 153 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 70 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 124 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 125 QKFQAVEVVL 134 >gi|218892082|ref|YP_002440949.1| hypothetical protein PLES_33631 [Pseudomonas aeruginosa LESB58] gi|218772308|emb|CAW28090.1| hypothetical protein PLES_33631 [Pseudomonas aeruginosa LESB58] Length = 238 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 WY+ DKG+GFI P G++VFLH SA +G V + DA G+ AE Sbjct: 21 WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 73 Query: 69 NLKL 72 +L Sbjct: 74 RARL 77 >gi|254240344|ref|ZP_04933666.1| hypothetical protein PA2G_00991 [Pseudomonas aeruginosa 2192] gi|126193722|gb|EAZ57785.1| hypothetical protein PA2G_00991 [Pseudomonas aeruginosa 2192] Length = 240 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 WY+ DKG+GFI P G++VFLH SA +G V + DA G+ AE Sbjct: 23 WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 75 Query: 69 NLKL 72 +L Sbjct: 76 RARL 79 >gi|254235046|ref|ZP_04928369.1| hypothetical protein PACG_00926 [Pseudomonas aeruginosa C3719] gi|126166977|gb|EAZ52488.1| hypothetical protein PACG_00926 [Pseudomonas aeruginosa C3719] Length = 240 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 WY+ DKG+GFI P G++VFLH SA +G V + DA G+ AE Sbjct: 23 WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 75 Query: 69 NLKL 72 +L Sbjct: 76 RARL 79 >gi|107101389|ref|ZP_01365307.1| hypothetical protein PaerPA_01002426 [Pseudomonas aeruginosa PACS2] Length = 227 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 WY+ DKG+GFI P G++VFLH SA +G V + DA G+ AE Sbjct: 10 WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 62 Query: 69 NLKL 72 +L Sbjct: 63 RARL 66 >gi|49082146|gb|AAT50473.1| PA1960 [synthetic construct] Length = 241 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 WY+ DKG+GFI P G++VFLH SA +G V + DA G+ AE Sbjct: 23 WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 75 Query: 69 NLKL 72 +L Sbjct: 76 RARL 79 >gi|15597156|ref|NP_250650.1| hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1] gi|9947958|gb|AAG05348.1|AE004622_10 hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1] Length = 240 Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 WY+ DKG+GFI P G++VFLH SA +G V + DA G+ AE Sbjct: 23 WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 75 Query: 69 NLKL 72 +L Sbjct: 76 RARL 79 >gi|195442396|ref|XP_002068944.1| GK17751 [Drosophila willistoni] gi|194165029|gb|EDW79930.1| GK17751 [Drosophila willistoni] Length = 1053 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF+ E E G +F H S V + L G V + V N NGK SA N Sbjct: 942 DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQRNGKSSACN 998 Query: 70 L 70 + Sbjct: 999 V 999 Score = 40.3 bits (94), Expect = 0.083, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 211 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 266 Query: 76 S 76 Sbjct: 267 E 267 >gi|254369157|ref|ZP_04985169.1| hypothetical protein FTAG_00096 [Francisella tularensis subsp. holarctica FSC022] gi|157122107|gb|EDO66247.1| hypothetical protein FTAG_00096 [Francisella tularensis subsp. holarctica FSC022] Length = 143 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 9/76 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62 +G++K+YN DKGYGFI S ES D F S + + G V ++ Q+ + Sbjct: 2 QGTVKFYNKDKGYGFI---YSEESEKDFF--FS-INDWKNPTVPNGSDDVEFEVAQSKKD 55 Query: 63 GKYSAENLKLVPKSSN 78 A N+KL+ + + Sbjct: 56 --EKAINIKLLKSAED 69 >gi|15292067|gb|AAK93302.1| LD37025p [Drosophila melanogaster] Length = 806 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%) Query: 3 HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 R ++ + KG +GF+ E E G +F H S V + L G V + V N Sbjct: 690 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 743 Query: 62 NGKYSAENL 70 NGK SA N+ Sbjct: 744 NGKSSACNV 752 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 8/66 (12%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71 +GFI E VF H S L GQ V Y +N AEN++ Sbjct: 542 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 597 Query: 72 LVPKSS 77 ++PK+S Sbjct: 598 MLPKNS 603 >gi|307171903|gb|EFN63545.1| Cold shock domain-containing protein E1 [Camponotus floridanus] Length = 885 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF+ E + G +F H S V L G V + V N GK SA N Sbjct: 770 DAVKGPFGFLAYE--VDEGKKLFFHISEVRD--HATLQPGDQVEFVLVTNQRTGKSSACN 825 Query: 70 LKLVPKSSN 78 + + + Sbjct: 826 VTRLSDAVQ 834 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S S L G V + +Q NGK A N+ +P Sbjct: 285 FGFIER---ADVVKEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 338 Query: 76 SS 77 S Sbjct: 339 GS 340 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 135 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKIAP 190 >gi|167622917|ref|YP_001673211.1| cold-shock DNA-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167352939|gb|ABZ75552.1| cold-shock DNA-binding domain protein [Shewanella halifaxensis HAW-EB4] Length = 209 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 ++ KG+GFI + VFLH SA AS G+ G V + V+ D GK+ A+N Sbjct: 15 WDDAKGFGFIQIAKQKQQ---VFLHISAFASKGIH-PQAGNRVQFHLVK-DKQGKWRADN 69 Query: 70 LKLV 73 +L+ Sbjct: 70 AQLL 73 >gi|26987372|ref|NP_742797.1| cold shock DNA-binding domain-containing protein [Pseudomonas putida KT2440] gi|24982026|gb|AAN66261.1|AE016254_8 cold shock DNA-binding domain protein [Pseudomonas putida KT2440] Length = 246 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 11/75 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++ + P+KG+GFI + G F+H V L +GQ V ++ Q Sbjct: 11 LTSGVVRSFMPEKGFGFIQGD----DGRSYFVHIKNVEGG---ELFDGQSVAFE-GQPGP 62 Query: 62 NGKYSAENLKLVPKS 76 G + +K+ P Sbjct: 63 KGYRA---VKVKPGE 74 >gi|221330989|ref|NP_001137912.1| upstream of N-ras, isoform B [Drosophila melanogaster] gi|220902519|gb|ACL83267.1| upstream of N-ras, isoform B [Drosophila melanogaster] Length = 1057 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%) Query: 3 HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 R ++ + KG +GF+ E E G +F H S V + L G V + V N Sbjct: 941 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 994 Query: 62 NGKYSAENL 70 NGK SA N+ Sbjct: 995 NGKSSACNV 1003 Score = 40.3 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 198 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 253 Query: 76 S 76 Sbjct: 254 E 254 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 8/66 (12%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71 +GFI E VF H S L GQ V Y +N AEN++ Sbjct: 793 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 848 Query: 72 LVPKSS 77 ++PK+S Sbjct: 849 MLPKNS 854 >gi|90075002|dbj|BAE87181.1| unnamed protein product [Macaca fascicularis] Length = 153 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 70 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 124 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 125 QKFQAVEVVL 134 >gi|47026413|gb|AAT08469.1| RE66582p [Drosophila melanogaster] Length = 1057 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%) Query: 3 HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 R ++ + KG +GF+ E E G +F H S V + L G V + V N Sbjct: 941 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 994 Query: 62 NGKYSAENL 70 NGK SA N+ Sbjct: 995 NGKSSACNV 1003 Score = 40.3 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 198 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 253 Query: 76 S 76 Sbjct: 254 E 254 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 8/66 (12%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71 +GFI E VF H S L GQ V Y +N AEN++ Sbjct: 793 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 848 Query: 72 LVPKSS 77 ++PKSS Sbjct: 849 MLPKSS 854 >gi|24660935|ref|NP_648226.2| upstream of N-ras, isoform A [Drosophila melanogaster] gi|23093910|gb|AAF50415.2| upstream of N-ras, isoform A [Drosophila melanogaster] Length = 1039 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%) Query: 3 HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 R ++ + KG +GF+ E E G +F H S V + L G V + V N Sbjct: 923 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 976 Query: 62 NGKYSAENL 70 NGK SA N+ Sbjct: 977 NGKSSACNV 985 Score = 40.3 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 198 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 253 Query: 76 S 76 Sbjct: 254 E 254 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 8/66 (12%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71 +GFI E VF H S L GQ V Y +N AEN++ Sbjct: 775 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 830 Query: 72 LVPKSS 77 ++PK+S Sbjct: 831 MLPKNS 836 >gi|195326013|ref|XP_002029725.1| GM24938 [Drosophila sechellia] gi|194118668|gb|EDW40711.1| GM24938 [Drosophila sechellia] Length = 1036 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%) Query: 3 HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 R ++ + KG +GF+ E E G +F H S V + L G V + V N Sbjct: 920 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 973 Query: 62 NGKYSAENL 70 NGK SA N+ Sbjct: 974 NGKSSACNV 982 Score = 40.3 bits (94), Expect = 0.096, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 195 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 250 Query: 76 S 76 Sbjct: 251 E 251 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 8/66 (12%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71 +GFI E VF H S L GQ V Y +N AEN++ Sbjct: 772 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 827 Query: 72 LVPKSS 77 ++PK+S Sbjct: 828 MLPKNS 833 >gi|307213494|gb|EFN88903.1| Cold shock domain-containing protein E1 [Harpegnathos saltator] Length = 887 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF+ E + G +F H S V L G V + V N GK SA N Sbjct: 772 DAVKGPFGFLAYE--VDEGKKLFFHISEVRD--HATLQPGDSVEFVLVTNQRTGKSSACN 827 Query: 70 LKLVPKSSN 78 + + + Sbjct: 828 VTRLSDAVQ 836 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S S L G V + +Q NGK A N+ +P Sbjct: 286 FGFIER---ADVVKEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 339 Query: 76 SS 77 S Sbjct: 340 GS 341 Score = 39.2 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 136 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKIAP 191 >gi|194865892|ref|XP_001971655.1| GG15082 [Drosophila erecta] gi|190653438|gb|EDV50681.1| GG15082 [Drosophila erecta] Length = 1035 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%) Query: 3 HRGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 R ++ + KG +GF+ E E G +F H S V + L G V + V N Sbjct: 919 KRATV---DSIKGQFGFLNFE--VEDGKKLFFHMSEVQGNTVA-LHPGDTVEFSVVTNQR 972 Query: 62 NGKYSAENL 70 NGK SA N+ Sbjct: 973 NGKSSACNV 981 Score = 40.3 bits (94), Expect = 0.098, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 194 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 249 Query: 76 S 76 Sbjct: 250 E 250 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 8/66 (12%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS----AENLK 71 +GFI E VF H S L GQ V Y +N AEN++ Sbjct: 771 FGFIETLSHDEE---VFFHFSNYMGNP-NWLELGQEVEYTLARNGNTSVSGNCLPAENVR 826 Query: 72 LVPKSS 77 ++PK+S Sbjct: 827 MLPKNS 832 >gi|163755666|ref|ZP_02162785.1| hypothetical protein KAOT1_05877 [Kordia algicida OT-1] gi|161324579|gb|EDP95909.1| hypothetical protein KAOT1_05877 [Kordia algicida OT-1] Length = 154 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V +G + +++ KG+GFI E+ + F H S + + + E V+++ Sbjct: 90 VRKGKVSFFDSSKGFGFII---DAENNEKYFTHVSGI----IDTIVENDKVSFELEMGKK 142 Query: 62 NGKYSAENLKLVPK 75 +A + L+ + Sbjct: 143 G--MNAVKVTLIKE 154 >gi|262373694|ref|ZP_06066972.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262311447|gb|EEY92533.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 205 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ DKGYGFI P + VFLH A G L G + Y + + Sbjct: 1 MRDQGRLVEWFD-DKGYGFIQPNDKHKDR--VFLHIKDFARTGPRPLV-GCALEYLVILD 56 Query: 60 DANGKYSAENLKLVPKSS 77 + G+Y A+ + + + Sbjct: 57 E-RGRYRAQQVSYLKAAQ 73 >gi|145284600|gb|ABP52047.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 26 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 4/30 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+NPDKG+GFIT +E G DVF+H Sbjct: 1 GKVKWFNPDKGFGFIT----SEDGQDVFVH 26 >gi|126726386|ref|ZP_01742227.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2150] gi|126704249|gb|EBA03341.1| cold-shock DNA-binding domain protein [Rhodobacterales bacterium HTCC2150] Length = 178 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +KW++ KG+GF+ + E G D+ LH + + + G ++ + + VQ+ A G Sbjct: 18 GKVKWFDQAKGFGFVVSD---EGGSDILLHANVLRNFGQSSIADATPLVI-AVQDTARGI 73 Query: 65 YSAENLKL 72 + E + + Sbjct: 74 QATEVISI 81 Score = 51.1 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 IKW++ KG+GF S DD+F+H + GL +L G+ + + GK Sbjct: 111 RIKWFDKSKGFGF---ANEFGSSDDIFVHVETLRRYGLADLMPGEAICLKIA-DGERGKM 166 Query: 66 SAEN 69 + E Sbjct: 167 AVEV 170 >gi|56708242|ref|YP_170138.1| cold shock protein (DNA-binding) [Francisella tularensis subsp. tularensis SCHU S4] gi|110670713|ref|YP_667270.1| cold shock protein (DNA-binding) [Francisella tularensis subsp. tularensis FSC198] gi|134302159|ref|YP_001122128.1| cold shock DNA -binding domain-containing protein [Francisella tularensis subsp. tularensis WY96-3418] gi|254370729|ref|ZP_04986734.1| cold shock protein [Francisella tularensis subsp. tularensis FSC033] gi|56604734|emb|CAG45805.1| cold shock protein (DNA-binding) [Francisella tularensis subsp. tularensis SCHU S4] gi|110321046|emb|CAL09188.1| cold shock protein (DNA-binding) [Francisella tularensis subsp. tularensis FSC198] gi|134049936|gb|ABO47007.1| cold shock DNA -binding domain protein [Francisella tularensis subsp. tularensis WY96-3418] gi|151568972|gb|EDN34626.1| cold shock protein [Francisella tularensis subsp. tularensis FSC033] gi|282159468|gb|ADA78859.1| cold shock DNA -binding domain protein [Francisella tularensis subsp. tularensis NE061598] Length = 143 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62 +G++K+YN DKGYGFI S ES D F ++ + G V ++ Q+ Sbjct: 2 QGTVKFYNKDKGYGFI---YSEESEKDFFF---SINDWKNPTVPNGSDDVEFEVAQSKKG 55 Query: 63 GKYSAENLKLVPKSSN 78 A N+KL+ + + Sbjct: 56 --EKAINIKLLKSAED 69 >gi|117921981|ref|YP_871173.1| cold-shock DNA-binding protein family protein [Shewanella sp. ANA-3] gi|117614313|gb|ABK49767.1| cold-shock DNA-binding protein family [Shewanella sp. ANA-3] Length = 192 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 5/39 (12%) Query: 2 VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA 39 + RG ++W N +KG+GFI PE G DVF+H + + Sbjct: 1 MERGILVRW-NDEKGFGFIQPEQQ---GKDVFIHITVLK 35 >gi|255011084|ref|ZP_05283210.1| putative DNA-binding protein [Bacteroides fragilis 3_1_12] gi|313148891|ref|ZP_07811084.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137658|gb|EFR55018.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 146 Score = 51.1 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 H G I+++N KGYGF+ T++G+ F H S+ + + EG VT++ + Sbjct: 83 HMGRIEYFNAAKGYGFV---KDTDNGEKYFFHISSAPA----TIAEGDRVTFEIERGMRG 135 Query: 63 GKYSAENLKLV 73 +A + +V Sbjct: 136 --MNAVRISVV 144 >gi|294649475|ref|ZP_06726899.1| cold-shock DNA-binding protein family protein [Acinetobacter haemolyticus ATCC 19194] gi|292824645|gb|EFF83424.1| cold-shock DNA-binding protein family protein [Acinetobacter haemolyticus ATCC 19194] Length = 231 Score = 51.1 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G IK YN D+G+GFI E D+F H + G G+LV + V++ Sbjct: 1 MFLTGKIKNYNSDRGFGFIEVEHDRS---DIFFHITDFPKIG-GEPKTGELVKFLIVED- 55 Query: 61 ANGKYSAENL 70 GK+ A ++ Sbjct: 56 -KGKFKATDI 64 >gi|300709891|ref|YP_003735705.1| cold-shock DNA-binding domain protein [Halalkalicoccus jeotgali B3] gi|299123574|gb|ADJ13913.1| cold-shock DNA-binding domain protein [Halalkalicoccus jeotgali B3] Length = 68 Score = 50.7 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G + ++N GYGFI T +G + +DVF H V G +LTEG V +D ++ Sbjct: 1 MANGKVDFFNDTGGYGFISTDDGDLDDDEDVFFHMEDV---GGEDLTEGTEVEFDI-ESS 56 Query: 61 ANGKYSAENLK 71 G +A ++ Sbjct: 57 PKGPRAANVVR 67 >gi|145542504|ref|XP_001456939.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124424753|emb|CAK89542.1| unnamed protein product [Paramecium tetraurelia] Length = 429 Score = 50.7 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 12/85 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYD- 55 ++ G +K+++ K YGFI + E D+F+H + AG L G + + Sbjct: 340 IYTGRLKFFDEQKNYGFIVMD---EDKSDIFVHLDDLQKAGVTKEVLKTAKLGSQIRFQF 396 Query: 56 ---YVQNDANGKYSAENLKLVPKSS 77 A LKL+ Sbjct: 397 NCMVYVGKYKRSRKAVELKLLSNQQ 421 >gi|91079915|ref|XP_967163.1| PREDICTED: similar to AGAP004937-PA [Tribolium castaneum] gi|270003264|gb|EEZ99711.1| hypothetical protein TcasGA2_TC002472 [Tribolium castaneum] Length = 910 Score = 50.7 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK-YSAENLKLV 73 G+GFI +T+ +VF H S +L GQ V Y+ +G SAEN+K++ Sbjct: 644 GFGFIE---TTQHDKEVFFHFSNFEGEP-NSLELGQEVEYNLGSRGNSGTCSSAENVKII 699 Query: 74 PKSS 77 PK + Sbjct: 700 PKGT 703 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 139 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASAVTKIAP 194 Query: 76 S 76 Sbjct: 195 E 195 Score = 38.0 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF+ E E G +F H + V NL G V + V N +GK SA + Sbjct: 795 DAIKGHFGFLAYE--VEEGKKLFFHMTEVKDN--VNLQVGDTVEFVLVTNHRSGKSSACS 850 Query: 70 LKLVPK 75 + V Sbjct: 851 VVKVSD 856 >gi|292654154|ref|YP_003534052.1| cold shock protein [Haloferax volcanii DS2] gi|291369791|gb|ADE02019.1| cold shock protein [Haloferax volcanii DS2] Length = 68 Score = 50.7 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G + ++N GYGFI T +G + +DVF H V +LTEG V +D ++ Sbjct: 1 MAHGKVDFFNDTGGYGFISTDDGDLDDDEDVFFHMEDVGGD---DLTEGTEVEFDI-ESS 56 Query: 61 ANGKYSAENLK 71 G +A ++ Sbjct: 57 PKGPRAANVVR 67 >gi|302542842|ref|ZP_07295184.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC 53653] gi|302460460|gb|EFL23553.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC 53653] Length = 136 Score = 50.7 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQN 59 M G I ++ +GYGFI P+ + G+DVF+H + + +L G V + Sbjct: 1 MTTTGKILRFDEFRGYGFIAPD---DGGEDVFMHANDLLDE--KHLFQPGSKVRFIPEYG 55 Query: 60 DANGKYSAENLKLVPKSS 77 D K A ++++ + + Sbjct: 56 DKGPK--ASEVRILERGA 71 >gi|225011114|ref|ZP_03701577.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-3C] gi|225004748|gb|EEG42707.1| cold-shock DNA-binding domain protein [Flavobacteria bacterium MS024-3C] Length = 152 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + +++ KG+GFI S E F+H S + + + E V+++ + Sbjct: 90 LRTGKVSFFDASKGFGFIIDAVSQEKH---FVHVSGL----IDEIMENDKVSFELERGQK 142 Query: 62 N 62 Sbjct: 143 G 143 >gi|259479879|tpe|CBF70506.1| TPA: cold shock NA binding domain protein (JCVI) [Aspergillus nidulans FGSC A4] Length = 111 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++KWYN +G+GFIT + E + L R ++ L EG V+Y+ V Sbjct: 49 GTVKWYNDAQGFGFITSDFGGE----LILRRQSITEHTQR-LKEGMKVSYEAV 96 >gi|68006761|ref|XP_670490.1| cold-shock protein [Plasmodium berghei strain ANKA] gi|56485793|emb|CAH94919.1| cold-shock protein, putative [Plasmodium berghei] Length = 84 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 G++ ++ KGYGFI P + G DVF+H + + Sbjct: 32 TGNVIKFDKRKGYGFIKP---NDGGPDVFVHYTEI 63 >gi|290463071|gb|ADD24583.1| Cold shock domain-containing protein CG9705 [Lepeophtheirus salmonis] Length = 179 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41 +H G +K++ +G+GFITP + F+H S + Sbjct: 84 LHEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGE 123 >gi|269961075|ref|ZP_06175444.1| hypothetical protein VME_18280 [Vibrio harveyi 1DA3] gi|269834294|gb|EEZ88384.1| hypothetical protein VME_18280 [Vibrio harveyi 1DA3] Length = 911 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 15/73 (20%) Query: 5 GSIKWY---NPDKG----YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G++ W+ N G +GFIT T VF+H++ V G+ L EG++V ++ + Sbjct: 10 GTVDWFGGKNKRTGRNNHFGFITIHDYTS----VFVHKNEVNG-GV--LEEGEVVVFELI 62 Query: 58 QNDANGKYSAENL 70 + D N K SA+N+ Sbjct: 63 K-DVNNKLSAKNV 74 >gi|225712740|gb|ACO12216.1| Cold shock domain-containing protein C2 [Lepeophtheirus salmonis] gi|225713682|gb|ACO12687.1| Cold shock domain-containing protein C2 [Lepeophtheirus salmonis] gi|290561012|gb|ADD37908.1| Cold shock domain-containing protein CG9705 [Lepeophtheirus salmonis] Length = 188 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41 +H G +K++ +G+GFITP + F+H S + Sbjct: 84 LHEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGE 123 >gi|225712200|gb|ACO11946.1| Cold shock domain-containing protein C2 [Lepeophtheirus salmonis] Length = 188 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41 +H G +K++ +G+GFITP + F+H S + Sbjct: 84 LHEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGE 123 >gi|229523137|ref|ZP_04412546.1| hypothetical protein VIF_003708 [Vibrio cholerae TM 11079-80] gi|229339833|gb|EEO04846.1| hypothetical protein VIF_003708 [Vibrio cholerae TM 11079-80] Length = 196 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G + N KGYGFI+ + VFLH S V S V ++ + D Sbjct: 1 MIKGKVVERNDSKGYGFIS---ALNGELRVFLHVSTVQSKSRR-PKVDDEVEFEVNE-DQ 55 Query: 62 NGKYSAENLKLV 73 G+Y+A N+ ++ Sbjct: 56 KGRYNATNVTIL 67 >gi|222480048|ref|YP_002566285.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222452950|gb|ACM57215.1| cold-shock DNA-binding domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 68 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Query: 2 VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G + ++N GYGFI T +G + +DVF H V G +L EGQ V +D + Sbjct: 1 MANGKVDFFNDTGGYGFISTDDGDLDDDEDVFFHMEDV---GGPDLEEGQEVEFDIESSP 57 Query: 61 ANGKYSAENLK 71 + A NL Sbjct: 58 KGPR--ATNLT 66 >gi|197336120|ref|YP_002156153.1| cold-shock DNA-binding domain protein [Vibrio fischeri MJ11] gi|197317610|gb|ACH67057.1| cold-shock DNA-binding domain protein [Vibrio fischeri MJ11] Length = 195 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G + +N KGYGFI+ + VFLH S + + G V++D + + G Sbjct: 2 KGRVVEWNDSKGYGFIS---ALNGELKVFLHISKLKNKNRR-PKIGDEVSFDINE-EIKG 56 Query: 64 KYSAENLKLV 73 +++A N+ +V Sbjct: 57 RFNANNVSIV 66 >gi|313669281|ref|YP_004049565.1| cold-shock dna-binding domain protein [Neisseria lactamica ST-640] gi|313006743|emb|CBN88213.1| putative cold-shock dna-binding domain protein [Neisseria lactamica 020-06] Length = 191 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 9/75 (12%) Query: 4 RGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSA-VASAGLFNLTEGQLVTYDYVQNDA 61 +G ++W + DKGYGFI E +F H S + L E V+++ V +D Sbjct: 2 KGKIVRW-HDDKGYGFIRTESGEGE---IFCHISDFLQRNPRPGLDE--QVSFEVV-SDG 54 Query: 62 NGKYSAENLKLVPKS 76 G++SA+ ++ + + Sbjct: 55 KGRFSAKQIRYLNRE 69 >gi|288918018|ref|ZP_06412376.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] gi|288350536|gb|EFC84755.1| cold-shock DNA-binding domain protein [Frankia sp. EUN1f] Length = 142 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQND 60 + G + ++ +GYGFI P ++ G+DVFLH + + +L G ++ +D +D Sbjct: 1 MSTGKVLRFDHVRGYGFIAP---SDGGEDVFLHANDLLVE--KSLVVPGVVMEFDVEDSD 55 Query: 61 ANGKYS 66 K S Sbjct: 56 RGRKAS 61 >gi|311255011|ref|XP_001928274.2| PREDICTED: cold shock domain-containing protein C2-like [Sus scrofa] Length = 153 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 70 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 124 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 125 QKFQAVEVVL 134 >gi|288575211|ref|ZP_05976526.2| cold shock domain protein [Neisseria mucosa ATCC 25996] gi|288568179|gb|EFC89739.1| cold shock domain protein [Neisseria mucosa ATCC 25996] Length = 221 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 13/74 (17%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL----TEGQLVTYDY 56 M H G+I +N ++ +G I E G ++F SA L EGQ V+++ Sbjct: 1 MRHFGTIIRWNDNRRFGAIREENM---GKEIFAPLSA-----FTTLPHPPAEGQRVSFEI 52 Query: 57 VQNDANGKYSAENL 70 ++ G+ AEN+ Sbjct: 53 IKG-RRGRDEAENI 65 >gi|289665743|ref|ZP_06487324.1| integral membrane protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289671247|ref|ZP_06492322.1| integral membrane protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 204 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D Sbjct: 1 MRYQGRLSDWNDHKGFGFVTPNG---GGDRAFVHISAFAQQSRR-PRDGEIITY-AIERD 55 Query: 61 ANGKYSAENLK 71 A + +A ++ Sbjct: 56 AQKRLNATQVR 66 >gi|293610661|ref|ZP_06692961.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827005|gb|EFF85370.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 209 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ +KGYGFI P+ + + VFLH A G + G + Y + + Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYRVILD 56 Query: 60 DANGKYSAENLKLVPKSS 77 + G++ A+ + + S Sbjct: 57 E-RGRFRAQQVTYLKASQ 73 >gi|294664904|ref|ZP_06730221.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605335|gb|EFF48669.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 206 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ Sbjct: 3 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQ-TRRPRDGEIITYAIERDA 58 Query: 61 ANGKYSAEN 69 +A+ Sbjct: 59 HKRLNAAQV 67 >gi|71909055|ref|YP_286642.1| cold-shock protein, DNA-binding:protein of unknown function DUF1294 [Dechloromonas aromatica RCB] gi|71848676|gb|AAZ48172.1| Cold-shock protein, DNA-binding:Protein of unknown function DUF1294 [Dechloromonas aromatica RCB] Length = 206 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G I + D+GYGFITP G G+ VFLH A + E ++VTY+ Q D Sbjct: 1 MRLQGRITSWKDDQGYGFITPNG---GGNPVFLHIKAFTRRQPRPVGE-EIVTYEL-QQD 55 Query: 61 ANGKYSAENLKLV 73 G++ AE+++ V Sbjct: 56 KRGRWRAESVEFV 68 >gi|257051473|ref|YP_003129306.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM 12940] gi|256690236|gb|ACV10573.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM 12940] Length = 78 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G + ++N GYGFI T +G + +DVF H V G +LTEG V +D ++ Sbjct: 11 MANGKVDFFNDTGGYGFISTDDGDLDEDEDVFFHMEDV---GGEDLTEGTEVEFDI-ESS 66 Query: 61 ANGKYSAENLK 71 G +A ++ Sbjct: 67 PKGPRAANLVR 77 >gi|124006449|ref|ZP_01691282.1| cold shock protein, putative DNA-binding protein [Microscilla marina ATCC 23134] gi|123987862|gb|EAY27542.1| cold shock protein, putative DNA-binding protein [Microscilla marina ATCC 23134] Length = 150 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V +G + ++N DKGYGFI + E +F+H + V L ++ E +VTY+ V Sbjct: 87 VRKGIVTYFNDDKGYGFIKDSKTKEK---IFVHINNV----LEDIKENNVVTYEVVMGQK 139 Query: 62 NGKYSAENLKL 72 +A +K+ Sbjct: 140 G--PAATEVKV 148 >gi|145284594|gb|ABP52044.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 27 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KG+GFI + G DVF+H Sbjct: 1 GKVKWFNEAKGFGFIAQD---NGGQDVFVH 27 >gi|325123771|gb|ADY83294.1| hypothetical protein BDGL_002708 [Acinetobacter calcoaceticus PHEA-2] Length = 209 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ +KGYGFI P+ + + VFLH A G + G + Y + + Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYRVILD 56 Query: 60 DANGKYSAENLKLVPKSS 77 + G++ A+ + + S Sbjct: 57 E-RGRFRAQQVTYLKASQ 73 >gi|309359008|emb|CAP33297.2| CBR-CEY-2 protein [Caenorhabditis briggsae AF16] Length = 265 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 3/38 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41 +G +KWY+ + YGFI+ + D+F+H++A+A + Sbjct: 62 QGKVKWYSVLRRYGFISR---NDGEKDIFVHQTAIAKS 96 >gi|325926682|ref|ZP_08187995.1| putative membrane protein [Xanthomonas perforans 91-118] gi|325542917|gb|EGD14367.1| putative membrane protein [Xanthomonas perforans 91-118] Length = 204 Score = 50.3 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D Sbjct: 1 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQ-TRRPRDGEIITY-AIERD 55 Query: 61 ANGKYSAENLK 71 A+ + +A ++ Sbjct: 56 AHKRLNATQVR 66 >gi|294625429|ref|ZP_06704060.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600252|gb|EFF44358.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 204 Score = 50.3 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D Sbjct: 1 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQ-TRRPRDGEIITY-AIERD 55 Query: 61 ANGKYSAENLK 71 A+ + +A ++ Sbjct: 56 AHKRLNATQVR 66 >gi|21243068|ref|NP_642650.1| integral membrane protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108581|gb|AAM37186.1| integral membrane protein [Xanthomonas axonopodis pv. citri str. 306] Length = 206 Score = 50.3 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + +N KG+GF+TP G GD F+H SA A +G+++TY ++ D Sbjct: 3 MRYQGRLSDWNDHKGFGFVTPHG---GGDRAFVHISAFAQQ-TRRPRDGEIITY-AIERD 57 Query: 61 ANGKYSAENLK 71 A+ + +A ++ Sbjct: 58 AHKRLNATQVR 68 >gi|145539083|ref|XP_001455236.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124423035|emb|CAK87839.1| unnamed protein product [Paramecium tetraurelia] Length = 425 Score = 50.3 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 12/85 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYD- 55 ++ G +K+++ K YGFI + + D+F+H + AG L +G L+ + Sbjct: 336 IYTGRLKFFDEQKNYGFIVMD---DDKSDIFVHLDDLQKAGVTKEVLKTSKQGSLLRFQF 392 Query: 56 ---YVQNDANGKYSAENLKLVPKSS 77 A LKL+ Sbjct: 393 NCMVYVGKYKKSRKAVELKLLANQQ 417 >gi|145489436|ref|XP_001430720.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124397820|emb|CAK63322.1| unnamed protein product [Paramecium tetraurelia] Length = 154 Score = 50.3 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43 + +G +K+Y+ K YGF+ + E G DVF+H + +AG+ Sbjct: 60 IRQKGRMKFYDDAKKYGFLVLD---EDGTDVFVHYDDLQAAGI 99 >gi|120555876|ref|YP_960227.1| hypothetical protein Maqu_2966 [Marinobacter aquaeolei VT8] gi|120325725|gb|ABM20040.1| protein of unknown function DUF1294 [Marinobacter aquaeolei VT8] Length = 214 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G + +N KG+GFITPE G+ +F H SA G + + V Y D Sbjct: 1 MNQKGLLTSWNDAKGFGFITPE---NGGERLFAHISAYQGRGRPS--ASRKVVY-AQTKD 54 Query: 61 ANGKYSA 67 G+ A Sbjct: 55 EKGRLRA 61 >gi|218463829|ref|ZP_03503920.1| cold-shock DNA-binding domain-containing protein [Rhizobium etli Kim 5] Length = 54 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 19/28 (67%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESG 28 M G++K++N DKG+GFI PE +G Sbjct: 1 MAETGTVKFFNTDKGFGFIKPEPGAAAG 28 >gi|296389633|ref|ZP_06879108.1| hypothetical protein PaerPAb_15856 [Pseudomonas aeruginosa PAb1] Length = 84 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 WY+ DKG+GFI P G++VFLH SA +G V + DA G+ AE Sbjct: 5 WYD-DKGFGFILP---KTGGEEVFLHISAFRGD--RRPRQGDQVWF-LASQDAQGRLRAE 57 Query: 69 NLKL 72 +L Sbjct: 58 RARL 61 >gi|313202310|ref|YP_004040968.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. MP688] gi|312441626|gb|ADQ85732.1| cold-shock DNA-binding domain protein [Methylovorus sp. MP688] Length = 201 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL-VTYDYVQN 59 M ++G I + +G+GFITP G G+ VFLH SA + EG V+Y+ Sbjct: 1 MRYQGRITTWKDKQGFGFITPNG---GGEPVFLHISAFSHRKRR--PEGDELVSYERTL- 54 Query: 60 DANGKYSAENLKLV 73 DA G+ A + V Sbjct: 55 DAKGRPQALKVAFV 68 >gi|227514815|ref|ZP_03944864.1| cold shock protein Csp [Lactobacillus fermentum ATCC 14931] gi|227086805|gb|EEI22117.1| cold shock protein Csp [Lactobacillus fermentum ATCC 14931] Length = 70 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + + +IK Y+P KG+G+IT + + G DV+ HR A+ + +GQ V VQ Sbjct: 1 MIQATIKSYDPTKGWGYIT---TPQDG-DVYFHRRAIEGRSRVPIQKGQAVEMVIVQGQ- 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGPQAAHV 63 >gi|260663603|ref|ZP_05864492.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] gi|260551829|gb|EEX24944.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] Length = 70 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + + +IK Y+P KG+G+IT + + G DV+ HR A+ + +GQ V VQ Sbjct: 1 MIQATIKSYDPTKGWGYIT---TPQDG-DVYFHRRAIEGRSRVPIQKGQAVEMVIVQGQ- 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGPQAAHV 63 >gi|71896273|ref|NP_001026089.1| cold shock domain-containing protein E1 [Gallus gallus] gi|60098943|emb|CAH65302.1| hypothetical protein RCJMB04_16d21 [Gallus gallus] Length = 794 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 683 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 733 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|60682910|ref|YP_213054.1| cold shock-like protein [Bacteroides fragilis NCTC 9343] gi|60494344|emb|CAH09140.1| cold shock-like protein [Bacteroides fragilis NCTC 9343] Length = 69 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G I+++N KGYGF+ ++G+ F H S+ + + EG VT++ + Sbjct: 7 MGRIEYFNAAKGYGFV---KDADNGEKYFFHISSAPA----TIAEGDRVTFEIERGMRG- 58 Query: 64 KYSAENLKLV 73 +A + +V Sbjct: 59 -MNAVRISIV 67 >gi|301164374|emb|CBW23932.1| putative cold-shock-like protein [Bacteroides fragilis 638R] Length = 69 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G I+++N KGYGF+ T+ G+ F H S+ + + EG VT++ + Sbjct: 7 MGRIEYFNAAKGYGFV---KDTDCGEKYFFHISSAPA----TIAEGDRVTFEIERGMRG- 58 Query: 64 KYSAENLKLV 73 +A + +V Sbjct: 59 -MNAVRISIV 67 >gi|255018523|ref|ZP_05290649.1| major cold-shock protein [Listeria monocytogenes FSL F2-515] Length = 27 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVF 32 + G++KW+N +KG+GFI E GDDVF Sbjct: 1 MQTGTVKWFNSEKGFGFIEVE----GGDDVF 27 >gi|148675659|gb|EDL07606.1| cold shock domain containing E1, RNA binding, isoform CRA_b [Mus musculus] Length = 854 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 252 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 305 Query: 76 SS 77 + Sbjct: 306 GT 307 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 741 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 791 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 92 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 147 Query: 76 S 76 Sbjct: 148 E 148 >gi|145284598|gb|ABP52046.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 26 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 4/30 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+NPDKG+GFIT +E G DVF+H Sbjct: 1 GPVKWFNPDKGFGFIT----SEDGQDVFVH 26 >gi|5714745|gb|AAD48061.1|AF171926_1 cold shock protein 7.4 [Rhodococcus sp. 7/1] Length = 57 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41 WYN +KG+G +TP+ + D F+H +A+ S Sbjct: 4 WYNAEKGFGCLTPD---DGSKDCFVHFTALRSE 33 >gi|297261183|ref|XP_001100705.2| PREDICTED: cold shock domain-containing protein C2-like [Macaca mulatta] Length = 116 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-NDAN 62 +G K ++ +G+GFITPE +D+F+H S + + EG VTY N Sbjct: 33 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDIEGE--YVPVEGDEVTYKMCPIPPKN 87 Query: 63 GKYSAENLKL 72 K+ A + L Sbjct: 88 QKFQAVEVVL 97 >gi|297518568|ref|ZP_06936954.1| cold shock protein CspE [Escherichia coli OP50] Length = 31 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 3/30 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFL 33 +G++KW+N KG+GFITPE + DVF+ Sbjct: 5 KGNVKWFNESKGFGFITPE---DGSKDVFV 31 >gi|145284580|gb|ABP52037.1| cold shock protein [Psychrobacter sp. BJ3] Length = 27 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KG+GFI + G DVF+H Sbjct: 1 GLVKWFNEAKGFGFIAQD---NGGQDVFVH 27 >gi|91791805|ref|YP_561456.1| cold-shock protein, DNA-binding [Shewanella denitrificans OS217] gi|91713807|gb|ABE53733.1| cold-shock DNA-binding protein family [Shewanella denitrificans OS217] Length = 239 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 14/77 (18%) Query: 2 VHRGS-IKWYNPDKGYGFITPEG----------STESGDDVFLHRSAVASAGLFNLTEGQ 50 + G+ ++W N KG+GFI PE DVF+H S + G Sbjct: 1 MENGTLVRW-NEGKGFGFIQPEQKITCLLNNKPDEALNIDVFIHISTLKHMARK-PKVGD 58 Query: 51 LVTYDYVQNDANGKYSA 67 + ++ + A+GK A Sbjct: 59 NIEFER-ELQADGKVRA 74 >gi|120435929|ref|YP_861615.1| cold shock-like protein [Gramella forsetii KT0803] gi|117578079|emb|CAL66548.1| cold shock-like protein [Gramella forsetii KT0803] Length = 152 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 7/59 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G + +++ KG+GFI +G+ F+H S + + + E V+++ Q Sbjct: 92 EGKVSFFDHSKGFGFII---GKTTGEKYFVHVSGL----IDEIDENDKVSFELEQGMKG 143 >gi|40788973|dbj|BAA74908.2| KIAA0885 protein [Homo sapiens] Length = 826 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 225 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 278 Query: 76 SS 77 + Sbjct: 279 GT 280 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 713 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 763 Score = 36.9 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 65 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 120 Query: 76 S 76 Sbjct: 121 E 121 >gi|184155059|ref|YP_001843399.1| putative cold shock protein [Lactobacillus fermentum IFO 3956] gi|183226403|dbj|BAG26919.1| putative cold shock protein [Lactobacillus fermentum IFO 3956] Length = 70 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + + +IK Y+P KG+G+IT + + G DV+ HR A+ + +GQ V VQ Sbjct: 1 MIQATIKSYDPTKGWGYIT---TPQDG-DVYFHRRAIEGRSRVPIQKGQAVEMVIVQGQ- 55 Query: 62 NGKYSAEN 69 G +A Sbjct: 56 RGPQAAHV 63 >gi|260556872|ref|ZP_05829089.1| cold-shock DNA-binding domain-containing protein [Acinetobacter baumannii ATCC 19606] gi|260409478|gb|EEX02779.1| cold-shock DNA-binding domain-containing protein [Acinetobacter baumannii ATCC 19606] Length = 209 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ +KGYGFI P+ + + VFLH A G + G + Y + + Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLVILD 56 Query: 60 DANGKYSAENLKLVPKSS 77 + G++ A+ + + S Sbjct: 57 E-RGRFRAQQVTYLKASQ 73 >gi|169794439|ref|YP_001712232.1| putative cold shock protein [Acinetobacter baumannii AYE] gi|213158987|ref|YP_002320985.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii AB0057] gi|215482028|ref|YP_002324210.1| hypothetical protein ABBFA_000271 [Acinetobacter baumannii AB307-0294] gi|301345651|ref|ZP_07226392.1| hypothetical protein AbauAB0_05388 [Acinetobacter baumannii AB056] gi|301512340|ref|ZP_07237577.1| hypothetical protein AbauAB05_12182 [Acinetobacter baumannii AB058] gi|301596165|ref|ZP_07241173.1| hypothetical protein AbauAB059_10134 [Acinetobacter baumannii AB059] gi|332851923|ref|ZP_08433809.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii 6013150] gi|332868841|ref|ZP_08438434.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii 6013113] gi|169147366|emb|CAM85227.1| putative cold shock protein [Acinetobacter baumannii AYE] gi|213058147|gb|ACJ43049.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii AB0057] gi|213987995|gb|ACJ58294.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294] gi|332729616|gb|EGJ60953.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii 6013150] gi|332733094|gb|EGJ64293.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii 6013113] Length = 209 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ +KGYGFI P+ + + VFLH A G + G + Y + + Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLVILD 56 Query: 60 DANGKYSAENLKLVPKSS 77 + G++ A+ + + S Sbjct: 57 E-RGRFRAQQVTYLKASQ 73 >gi|194210948|ref|XP_001917791.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 4 [Equus caballus] Length = 838 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 237 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 290 Query: 76 SS 77 + Sbjct: 291 GT 292 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 725 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 775 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 77 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 132 Query: 76 S 76 Sbjct: 133 E 133 >gi|194210946|ref|XP_001917794.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 5 [Equus caballus] gi|194210954|ref|XP_001917800.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 6 [Equus caballus] Length = 798 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|149030463|gb|EDL85500.1| upstream of NRAS, isoform CRA_b [Rattus norvegicus] Length = 799 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 686 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 736 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|148232804|ref|NP_001080597.1| calcium regulated heat stable protein 1, 24kDa [Xenopus laevis] gi|27696469|gb|AAH44047.1| Carhsp1-prov protein [Xenopus laevis] Length = 100 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 3/35 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36 V++G K ++ KG+GFITPE + G D+FLH S Sbjct: 68 VYKGVCKSFSRSKGHGFITPE---DGGPDIFLHIS 99 >gi|311254534|ref|XP_003125880.1| PREDICTED: cold shock domain-containing protein E1-like isoform 2 [Sus scrofa] Length = 798 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735 Score = 36.9 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|296208928|ref|XP_002751324.1| PREDICTED: cold shock domain-containing protein E1 [Callithrix jacchus] Length = 776 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 663 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 713 Score = 36.9 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|332237743|ref|XP_003268067.1| PREDICTED: cold shock domain-containing protein E1 isoform 2 [Nomascus leucogenys] gi|332237749|ref|XP_003268070.1| PREDICTED: cold shock domain-containing protein E1 isoform 5 [Nomascus leucogenys] Length = 798 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|148675658|gb|EDL07605.1| cold shock domain containing E1, RNA binding, isoform CRA_a [Mus musculus] Length = 823 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 221 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 274 Query: 76 SS 77 + Sbjct: 275 GT 276 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 710 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 760 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 92 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 147 Query: 76 S 76 Sbjct: 148 E 148 >gi|109014489|ref|XP_001111655.1| PREDICTED: cold shock domain-containing protein E1 isoform 1 [Macaca mulatta] gi|119577020|gb|EAW56616.1| cold shock domain containing E1, RNA-binding, isoform CRA_d [Homo sapiens] Length = 844 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 243 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 296 Query: 76 SS 77 + Sbjct: 297 GT 298 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 731 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 781 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138 Query: 76 S 76 Sbjct: 139 E 139 >gi|56117852|ref|NP_001007554.1| cold shock domain-containing protein E1 isoform 1 [Homo sapiens] gi|297279637|ref|XP_002801760.1| PREDICTED: cold shock domain-containing protein E1 isoform 2 [Macaca mulatta] gi|297279639|ref|XP_002801761.1| PREDICTED: cold shock domain-containing protein E1 isoform 3 [Macaca mulatta] gi|332809923|ref|XP_001160588.2| PREDICTED: cold shock domain-containing protein E1 isoform 1 [Pan troglodytes] gi|332809929|ref|XP_003308349.1| PREDICTED: cold shock domain-containing protein E1 isoform 5 [Pan troglodytes] gi|12643993|sp|O75534|CSDE1_HUMAN RecName: Full=Cold shock domain-containing protein E1; AltName: Full=N-ras upstream gene protein; AltName: Full=Protein UNR gi|56203365|emb|CAI18825.1| cold shock domain containing E1, RNA-binding [Homo sapiens] gi|119577016|gb|EAW56612.1| cold shock domain containing E1, RNA-binding, isoform CRA_a [Homo sapiens] gi|119577019|gb|EAW56615.1| cold shock domain containing E1, RNA-binding, isoform CRA_a [Homo sapiens] gi|158261315|dbj|BAF82835.1| unnamed protein product [Homo sapiens] gi|168269522|dbj|BAG09888.1| cold shock domain-containing protein E1 [synthetic construct] Length = 798 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|16758924|ref|NP_446458.1| cold shock domain-containing protein E1 [Rattus norvegicus] gi|137045|sp|P18395|CSDE1_RAT RecName: Full=Cold shock domain-containing protein E1; AltName: Full=Protein UNR gi|57455|emb|CAA36549.1| unnamed protein product [Rattus norvegicus] Length = 798 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|21450287|ref|NP_659150.1| cold shock domain-containing protein E1 isoform 1 [Mus musculus] gi|73620670|sp|Q91W50|CSDE1_MOUSE RecName: Full=Cold shock domain-containing protein E1 gi|16877280|gb|AAH16898.1| Cold shock domain containing E1, RNA binding [Mus musculus] gi|38328232|gb|AAH62097.1| Cold shock domain containing E1, RNA binding [Mus musculus] gi|74144797|dbj|BAE27372.1| unnamed protein product [Mus musculus] gi|74212957|dbj|BAE33417.1| unnamed protein product [Mus musculus] Length = 798 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 735 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|332874259|ref|ZP_08442179.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii 6014059] gi|323519689|gb|ADX94070.1| hypothetical protein ABTW07_3653 [Acinetobacter baumannii TCDC-AB0715] gi|332737543|gb|EGJ68450.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii 6014059] Length = 209 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ +KGYGFI P+ + + VFLH A G + G + Y + + Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLVILD 56 Query: 60 DANGKYSAENLKLVPKSS 77 + G++ A+ + + S Sbjct: 57 E-RGRFRAQQVTYLKASQ 73 >gi|184159755|ref|YP_001848094.1| hypothetical protein ACICU_03438 [Acinetobacter baumannii ACICU] gi|239502018|ref|ZP_04661328.1| hypothetical protein AbauAB_06855 [Acinetobacter baumannii AB900] gi|183211349|gb|ACC58747.1| predicted membrane protein [Acinetobacter baumannii ACICU] gi|193078601|gb|ABO13633.2| putative cold shock protein [Acinetobacter baumannii ATCC 17978] gi|322509668|gb|ADX05122.1| Putative cold shock protein [Acinetobacter baumannii 1656-2] Length = 209 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ +KGYGFI P+ + + VFLH A G + G + Y + + Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLVILD 56 Query: 60 DANGKYSAENLKLVPKSS 77 + G++ A+ + + S Sbjct: 57 E-RGRFRAQQVTYLKASQ 73 >gi|161611902|gb|AAI55634.1| LOC557375 protein [Danio rerio] Length = 162 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDAN 62 +G K ++ +G+GFI P GDD+F H S + + EG VTY + N Sbjct: 79 KGVCKDFSRSQGHGFIKP---AHGGDDIFFHISDIEGE--YVPVEGDEVTYKVCLIPPKN 133 Query: 63 GKYSAENLKL 72 K A + + Sbjct: 134 VKVQAVEVTI 143 >gi|157376410|ref|YP_001475010.1| hypothetical protein Ssed_3278 [Shewanella sediminis HAW-EB3] gi|157318784|gb|ABV37882.1| hypothetical protein Ssed_3278 [Shewanella sediminis HAW-EB3] Length = 274 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Query: 4 RGS-IKWYNPDKGYGFITPE--GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +G+ ++W DKG+GFI PE T+S D+F+H S + L EG + + ++ Sbjct: 7 KGTLVRW-KDDKGFGFIEPETGSGTDSHTDIFIHVSQLRHMSRRPL-EGDTIFFQI-EHK 63 Query: 61 ANGKYSAENLKL 72 GK +A ++ Sbjct: 64 PGGKLNAIEARI 75 >gi|51476482|emb|CAH18231.1| hypothetical protein [Homo sapiens] Length = 844 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 243 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 296 Query: 76 SS 77 + Sbjct: 297 GT 298 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 731 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 781 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138 Query: 76 S 76 Sbjct: 139 E 139 >gi|28972443|dbj|BAC65675.1| mKIAA0885 protein [Mus musculus] Length = 822 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 221 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 274 Query: 76 SS 77 + Sbjct: 275 GT 276 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 709 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 759 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 92 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 147 Query: 76 S 76 Sbjct: 148 E 148 >gi|224370464|ref|YP_002604628.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2] gi|223693181|gb|ACN16464.1| putative cold-shock protein [Desulfobacterium autotrophicum HRM2] Length = 217 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-GQLVTYDYVQN 59 M+ RG+I ++N KG+GFITP G +F H + + L E Q +TY Sbjct: 1 MLRRGTITFWNDGKGFGFITP---NAGGKQLFFHIKSCSPHNLR--PEINQSITYSLSV- 54 Query: 60 DANGKYSAENLKLVPK 75 D G+ A + ++P Sbjct: 55 DKQGRPCAVKV-ILPD 69 >gi|293357482|ref|XP_002729159.1| PREDICTED: cold shock domain containing E1, RNA binding [Rattus norvegicus] Length = 727 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 614 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 664 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|57098733|ref|XP_533016.1| PREDICTED: similar to Cold shock domain protein E1 (UNR protein) (N-ras upstream gene protein) isoform 5 [Canis familiaris] Length = 844 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI ++F H S L L G V + D NGK A +++L+P+ Sbjct: 243 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 296 Query: 76 SS 77 + Sbjct: 297 GT 298 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 731 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 781 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 138 Query: 76 S 76 Sbjct: 139 E 139 >gi|146329050|ref|YP_001209092.1| cold-shock DNA-binding domain-containing protein [Dichelobacter nodosus VCS1703A] gi|146232520|gb|ABQ13498.1| cold-shock DNA-binding domain protein [Dichelobacter nodosus VCS1703A] Length = 210 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++ ++N DKG+GFI + E +VF H S A G V++ +G Sbjct: 12 TGTVVYWNDDKGFGFI---DTNEKQANVFFHISHFAYENRR-PQRGDKVSFLRSPEQTSG 67 Query: 64 KYSAENLKL 72 K SA+ + + Sbjct: 68 KPSAKRVVI 76 >gi|145520026|ref|XP_001445874.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124413340|emb|CAK78477.1| unnamed protein product [Paramecium tetraurelia] Length = 178 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43 +G +K+Y+ K YGF+ + E G DVF+H + +AG+ Sbjct: 86 RQKGRMKFYDDAKKYGFLVLD---EDGTDVFVHYDDLQAAGI 124 >gi|319898508|ref|YP_004158601.1| cold shock protein y4cH [Bartonella clarridgeiae 73] gi|319402472|emb|CBI76015.1| putative cold shock protein y4cH (fragment) [Bartonella clarridgeiae 73] Length = 42 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43 MV G +K++N +K + FI P D+F+H S V +GL Sbjct: 1 MVQTGEVKFFNNNKDFDFIKP---NNGNTDIFVHISDVQVSGL 40 >gi|170769977|ref|ZP_02904430.1| cold shock DNA-binding protein [Escherichia albertii TW07627] gi|170121161|gb|EDS90092.1| cold shock DNA-binding protein [Escherichia albertii TW07627] Length = 70 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G GFI P ++ +V +H SA++ L G V + V N G Sbjct: 6 TGIVKTFDRKSGKGFIIP---SDGRKEVQVHISALSLRDAETLIPGVRVEFCRV-NGLRG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PTAANV 67 >gi|284038911|ref|YP_003388841.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74] gi|283818204|gb|ADB40042.1| cold-shock DNA-binding domain protein [Spirosoma linguale DSM 74] Length = 148 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN-LTEGQLVTYDYVQN 59 +V +G + ++N KGYGFI + ES +F+H GL + E VT+ + Sbjct: 83 LVRQGVVTFFNDSKGYGFIRDLQTQES---IFVHI-----NGLKEPIGEQDKVTFS-TEM 133 Query: 60 DANGKYSAENLKLV 73 G + + KLV Sbjct: 134 TPKGPNAVDVKKLV 147 >gi|332306019|ref|YP_004433870.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173348|gb|AEE22602.1| cold-shock DNA-binding domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 236 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G I +N DKG+GF+ P G G+ F+H A + +G ++ Y+ V+ D Sbjct: 1 MRFQGKIFNWNDDKGFGFVEPNG---GGERAFVHIKAFNPRSRRPI-DGDIIIYELVRED 56 Query: 61 ANGKYSAENLK 71 + + A N++ Sbjct: 57 NH-RAKAINIQ 66 >gi|194210952|ref|XP_001917787.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 2 [Equus caballus] Length = 807 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 206 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 259 Query: 76 SS 77 + Sbjct: 260 GT 261 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 694 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 744 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 77 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 132 Query: 76 S 76 Sbjct: 133 E 133 >gi|194210950|ref|XP_001917786.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 1 [Equus caballus] gi|194210956|ref|XP_001917789.1| PREDICTED: cold shock domain containing E1, RNA-binding isoform 3 [Equus caballus] Length = 767 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|74180377|dbj|BAE32354.1| unnamed protein product [Mus musculus] Length = 767 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 41.9 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|51476573|emb|CAH18269.1| hypothetical protein [Homo sapiens] Length = 813 Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 212 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 265 Query: 76 SS 77 + Sbjct: 266 GT 267 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 750 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138 Query: 76 S 76 Sbjct: 139 E 139 >gi|311254536|ref|XP_003125879.1| PREDICTED: cold shock domain-containing protein E1-like isoform 1 [Sus scrofa] Length = 767 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|149030462|gb|EDL85499.1| upstream of NRAS, isoform CRA_a [Rattus norvegicus] Length = 768 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 655 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 705 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|117646050|emb|CAL38492.1| hypothetical protein [synthetic construct] Length = 767 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|117644482|emb|CAL37736.1| hypothetical protein [synthetic construct] Length = 767 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|197100292|ref|NP_001126684.1| cold shock domain-containing protein E1 [Pongo abelii] gi|55732349|emb|CAH92877.1| hypothetical protein [Pongo abelii] Length = 767 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|332809925|ref|XP_003308347.1| PREDICTED: cold shock domain-containing protein E1 isoform 3 [Pan troglodytes] Length = 813 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 212 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 265 Query: 76 SS 77 + Sbjct: 266 GT 267 Score = 42.2 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 750 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138 Query: 76 S 76 Sbjct: 139 E 139 >gi|332237745|ref|XP_003268068.1| PREDICTED: cold shock domain-containing protein E1 isoform 3 [Nomascus leucogenys] Length = 813 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 212 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 265 Query: 76 SS 77 + Sbjct: 266 GT 267 Score = 42.2 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 750 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138 Query: 76 S 76 Sbjct: 139 E 139 >gi|332237741|ref|XP_003268066.1| PREDICTED: cold shock domain-containing protein E1 isoform 1 [Nomascus leucogenys] gi|332237747|ref|XP_003268069.1| PREDICTED: cold shock domain-containing protein E1 isoform 4 [Nomascus leucogenys] Length = 767 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.2 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|296394224|ref|YP_003659108.1| cold-shock DNA-binding domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181371|gb|ADG98277.1| cold-shock DNA-binding domain protein [Segniliparus rotundus DSM 44985] Length = 167 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 11/76 (14%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS----AVASAGLFNLTEGQLVTYDY 56 M G + ++ +G+GF+ P+ G+DVF+H + AVA L G ++ +D Sbjct: 1 MTSSGKLVHFDAVRGFGFVAPDA---GGEDVFIHVNDFEEAVADE--RLLRPGAVLEFDV 55 Query: 57 VQNDANGKYSAENLKL 72 + A +++L Sbjct: 56 ERGGRG--LKAVHVRL 69 >gi|194473720|ref|NP_001123995.1| cold shock domain-containing protein E1 isoform 3 [Homo sapiens] gi|297279641|ref|XP_002801762.1| PREDICTED: cold shock domain-containing protein E1 isoform 4 [Macaca mulatta] Length = 813 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 212 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 265 Query: 76 SS 77 + Sbjct: 266 GT 267 Score = 42.2 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 750 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 138 Query: 76 S 76 Sbjct: 139 E 139 >gi|240255574|ref|NP_001155326.1| cold shock domain-containing protein E1 isoform 2 [Mus musculus] gi|20987700|gb|AAH29688.1| Csde1 protein [Mus musculus] gi|21619512|gb|AAH31404.1| Csde1 protein [Mus musculus] gi|74139915|dbj|BAE31796.1| unnamed protein product [Mus musculus] gi|74150943|dbj|BAE27606.1| unnamed protein product [Mus musculus] gi|74196030|dbj|BAE30568.1| unnamed protein product [Mus musculus] gi|74198827|dbj|BAE30641.1| unnamed protein product [Mus musculus] gi|74204741|dbj|BAE35437.1| unnamed protein product [Mus musculus] gi|74207308|dbj|BAE30839.1| unnamed protein product [Mus musculus] gi|74219259|dbj|BAE26763.1| unnamed protein product [Mus musculus] gi|74220216|dbj|BAE31288.1| unnamed protein product [Mus musculus] Length = 767 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 41.9 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|74192859|dbj|BAE34939.1| unnamed protein product [Mus musculus] Length = 767 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 41.9 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI + +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQCSERQAT---LFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|117645778|emb|CAL38356.1| hypothetical protein [synthetic construct] Length = 767 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|117645156|emb|CAL38044.1| hypothetical protein [synthetic construct] Length = 767 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|56117850|ref|NP_009089.4| cold shock domain-containing protein E1 isoform 2 [Homo sapiens] gi|297279643|ref|XP_002801763.1| PREDICTED: cold shock domain-containing protein E1 isoform 5 [Macaca mulatta] gi|297279645|ref|XP_002801764.1| PREDICTED: cold shock domain-containing protein E1 isoform 6 [Macaca mulatta] gi|332809921|ref|XP_003308346.1| PREDICTED: cold shock domain-containing protein E1 isoform 2 [Pan troglodytes] gi|332809927|ref|XP_003308348.1| PREDICTED: cold shock domain-containing protein E1 isoform 4 [Pan troglodytes] gi|21619086|gb|AAH32446.1| Cold shock domain containing E1, RNA-binding [Homo sapiens] gi|56203366|emb|CAI18826.1| cold shock domain containing E1, RNA-binding [Homo sapiens] gi|117646066|emb|CAL38500.1| hypothetical protein [synthetic construct] gi|119577017|gb|EAW56613.1| cold shock domain containing E1, RNA-binding, isoform CRA_b [Homo sapiens] gi|119577022|gb|EAW56618.1| cold shock domain containing E1, RNA-binding, isoform CRA_b [Homo sapiens] gi|119577023|gb|EAW56619.1| cold shock domain containing E1, RNA-binding, isoform CRA_b [Homo sapiens] Length = 767 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|10433950|dbj|BAB14073.1| unnamed protein product [Homo sapiens] gi|10433969|dbj|BAB14080.1| unnamed protein product [Homo sapiens] Length = 767 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|260550786|ref|ZP_05824993.1| cold-shock DNA-binding domain-containing protein [Acinetobacter sp. RUH2624] gi|260406096|gb|EEW99581.1| cold-shock DNA-binding domain-containing protein [Acinetobacter sp. RUH2624] Length = 209 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ +KGYGFI P+ + + VFLH A G + G + Y + + Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLVILD 56 Query: 60 DANGKYSAENLKLVPKSS 77 + G++ A+ + + S Sbjct: 57 E-RGRFRAQQVTYLKASQ 73 >gi|145504068|ref|XP_001438006.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124405167|emb|CAK70609.1| unnamed protein product [Paramecium tetraurelia] Length = 433 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 12/85 (14%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYD- 55 ++ G +K+++ K YGFI + E D+F+H + AG L +G L+ + Sbjct: 344 IYTGRLKFFDEQKNYGFIVMD---EDKSDIFVHLDDLQKAGVTKEVLKTSKQGLLLRFQF 400 Query: 56 ---YVQNDANGKYSAENLKLVPKSS 77 A LKL+ Sbjct: 401 NCMVYVGKYKKSRKAVELKLLANQQ 425 >gi|262370718|ref|ZP_06064043.1| cold-shock DNA-binding domain-containing protein [Acinetobacter johnsonii SH046] gi|262314518|gb|EEY95560.1| cold-shock DNA-binding domain-containing protein [Acinetobacter johnsonii SH046] Length = 209 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 8/79 (10%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDD-VFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 M +G ++W++ +KGYGFI P + D VFLH A G + G + Y+ + Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQP---NDDSKDRVFLHIKDFARQGPRPIL-GCALEYNVLV 55 Query: 59 NDANGKYSAENLKLVPKSS 77 DA G+Y A+ + + S Sbjct: 56 -DAQGRYRAQQVSYLKASQ 73 >gi|111221830|ref|YP_712624.1| putative DNA binding protein [Frankia alni ACN14a] gi|111149362|emb|CAJ61051.1| putative DNA binding protein [Frankia alni ACN14a] Length = 137 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQND 60 + G + ++ +GYGFI P ++ GDD+FLH + + NL G + ++ + + Sbjct: 1 MSTGKVLRFDHVRGYGFIAP---SDGGDDIFLHANDLLVE--KNLVVPGTFMEFEVEEGE 55 Query: 61 ANGKYS 66 K S Sbjct: 56 RGLKAS 61 >gi|73981073|ref|XP_856513.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 7 [Canis familiaris] gi|73981081|ref|XP_856679.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 11 [Canis familiaris] Length = 813 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI ++F H S L L G V + D NGK A +++L+P+ Sbjct: 212 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 265 Query: 76 SS 77 + Sbjct: 266 GT 267 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 750 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 138 Query: 76 S 76 Sbjct: 139 E 139 >gi|73981071|ref|XP_856473.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 6 [Canis familiaris] gi|73981079|ref|XP_856637.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 10 [Canis familiaris] gi|73981085|ref|XP_856758.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 13 [Canis familiaris] Length = 767 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|254670958|emb|CBA07630.1| hypothetical cold-shock protein [Neisseria meningitidis alpha153] Length = 204 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW + +KGYGFI +G ++F H S + + E V ++ V +D G++ Sbjct: 19 VKW-DDEKGYGFIRIDG---GNKEIFCHISDFSPRNPRPEINE--AVGFEVV-SDGKGRF 71 Query: 66 SAENLKLVPKS 76 SA+ ++ + + Sbjct: 72 SAKQIRYLNRE 82 >gi|293350407|ref|XP_002727448.1| PREDICTED: cold shock domain-containing protein E1-like, partial [Rattus norvegicus] Length = 742 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|53714928|ref|YP_100920.1| putative DNA-binding protein [Bacteroides fragilis YCH46] gi|52217793|dbj|BAD50386.1| putative DNA-binding protein [Bacteroides fragilis YCH46] Length = 146 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G I+++N KGYGF+ ++G+ F H S+ + + EG VT++ + Sbjct: 84 MGRIEYFNAAKGYGFV---KDADNGEKYFFHISSAPA----TIAEGDRVTFEIERGMRG- 135 Query: 64 KYSAENLKLV 73 +A + +V Sbjct: 136 -MNAVRISIV 144 >gi|53804338|ref|YP_114060.1| cold-shock DNA-binding domain-containing protein [Methylococcus capsulatus str. Bath] gi|53758099|gb|AAU92390.1| cold-shock DNA-binding domain protein [Methylococcus capsulatus str. Bath] Length = 305 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++ + +KG+GFITP+ GD+ F H S + ++ G ++++ +ND Sbjct: 239 GTVLSFFHEKGFGFITPD---NGGDNFFFHVSDLTGIEASDVCAGLRISFNAGRNDKG-- 293 Query: 65 YSAENLKLV 73 +A N++ + Sbjct: 294 LAAHNIRKL 302 >gi|145284590|gb|ABP52042.1| cold shock protein [Psychrobacter sp. BJ3] gi|145284592|gb|ABP52043.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 27 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KG+GFI + G DVF+H Sbjct: 1 GPVKWFNEAKGFGFIAQD---NGGQDVFVH 27 >gi|196019570|ref|XP_002119003.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens] gi|190577377|gb|EDV18511.1| hypothetical protein TRIADDRAFT_62972 [Trichoplax adhaerens] Length = 203 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 18/29 (62%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGD 29 M G++KW+NP+KGYGF+ E + Sbjct: 1 MKVTGTVKWFNPEKGYGFVKQENGNKENK 29 >gi|254000354|ref|YP_003052417.1| cold-shock DNA-binding domain-containing protein [Methylovorus sp. SIP3-4] gi|253987033|gb|ACT51890.1| cold-shock DNA-binding domain protein [Methylovorus sp. SIP3-4] Length = 201 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 12/84 (14%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL-VTYDYVQN 59 M ++G I + +G+GFITP G GD VFLH SA + EG VTY+ Sbjct: 1 MRYQGRITTWKDKQGFGFITPNG---GGDPVFLHISAFSHRKRR--PEGDELVTYERTL- 54 Query: 60 DANGKYSAENLKLV-----PKSSN 78 DA G+ A + V P SS Sbjct: 55 DAKGRPHALKVAFVGHRPAPASSQ 78 >gi|19354137|gb|AAH24826.1| Csde1 protein [Mus musculus] Length = 689 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 88 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 141 Query: 76 SS 77 + Sbjct: 142 GT 143 Score = 41.5 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 576 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 626 >gi|74142169|dbj|BAE31853.1| unnamed protein product [Mus musculus] gi|74220547|dbj|BAE31489.1| unnamed protein product [Mus musculus] Length = 622 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 21 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 74 Query: 76 SS 77 + Sbjct: 75 GT 76 Score = 41.5 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 509 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 559 >gi|255066450|ref|ZP_05318305.1| cold shock domain protein [Neisseria sicca ATCC 29256] gi|255049330|gb|EET44794.1| cold shock domain protein [Neisseria sicca ATCC 29256] Length = 226 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 13/74 (17%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL----TEGQLVTYDY 56 M + G+I +N ++ +G I E G +VF SA L EGQ V++D Sbjct: 1 MRYYGTITRWNDNRQFGAIREESM---GTEVFAPLSA-----FTTLTRPPAEGQRVSFDI 52 Query: 57 VQNDANGKYSAENL 70 V+ G+ AEN+ Sbjct: 53 VKG-RRGRDEAENI 65 >gi|253566037|ref|ZP_04843491.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251945141|gb|EES85579.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 146 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G I+++N KGYGF+ ++G+ F H S+ + + EG VT++ + Sbjct: 84 MGRIEYFNAAKGYGFV---KDADNGEKYFFHISSAPT----TIAEGDRVTFEIERGMRG- 135 Query: 64 KYSAENLKLV 73 +A + +V Sbjct: 136 -MNAVRISIV 144 >gi|254381040|ref|ZP_04996405.1| hypothetical protein SSAG_00707 [Streptomyces sp. Mg1] gi|194339950|gb|EDX20916.1| hypothetical protein SSAG_00707 [Streptomyces sp. Mg1] Length = 95 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQN 59 M G +KW++ +G G I+ EG+ G D+ SA+ G L +G+ V +D + Sbjct: 1 MSPCGVVKWFDLGRGIGLISQEGA---GPDIRAEASAIHGRDGR--LRQGEEVLFDVTLD 55 Query: 60 DANGKYSAENLK 71 A A+N++ Sbjct: 56 SAG--LRADNIR 65 >gi|16041096|dbj|BAB69715.1| hypothetical protein [Macaca fascicularis] Length = 531 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|296489462|gb|DAA31575.1| cold shock domain containing E1, RNA-binding [Bos taurus] Length = 767 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI ++F H S L +L G V + D NGK A +++L+P+ Sbjct: 166 FGFIERGDIV---KEIFFHYSEFKGD-LESLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|89514265|gb|ABD74995.1| putative cold shock transcription regulator protein [Sinorhizobium kostiense] Length = 29 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFL 33 + G++K++N DKG+GFI PE G D+F+ Sbjct: 1 METGTVKFFNTDKGFGFIKPE---NGGADIFV 29 >gi|83591523|ref|YP_425275.1| cold-shock DNA-binding protein family protein [Rhodospirillum rubrum ATCC 11170] gi|83574437|gb|ABC20988.1| cold-shock DNA-binding protein family [Rhodospirillum rubrum ATCC 11170] Length = 882 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++K Y+P KG G+I P+G G D+ + ++ + + G+ L + V + D G Sbjct: 819 RGTVKHYDPIKGRGYIIPDGK---GSDILIEKAVLKACGMGRLKKNDRVV--VITKDQGG 873 Query: 64 KYSAENLK 71 K A +++ Sbjct: 874 KPVAIDVR 881 >gi|148227486|ref|NP_001091494.1| cold shock domain-containing protein E1 [Bos taurus] gi|146186480|gb|AAI40515.1| CSDE1 protein [Bos taurus] Length = 767 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI ++F H S L +L G V + D NGK A +++L+P+ Sbjct: 166 FGFIERGDIV---KEIFFHYSEFKGD-LESLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.2 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|119577021|gb|EAW56617.1| cold shock domain containing E1, RNA-binding, isoform CRA_e [Homo sapiens] Length = 555 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 160 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 213 Query: 76 SS 77 + Sbjct: 214 GT 215 >gi|16356661|gb|AAL15445.1| NRAS-related protein [Homo sapiens] Length = 708 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.2 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|73981075|ref|XP_856559.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 8 [Canis familiaris] gi|73981077|ref|XP_856596.1| PREDICTED: similar to upstream of NRAS isoform 2 isoform 9 [Canis familiaris] Length = 668 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI ++F H S L L G V + D NGK A +++L+P+ Sbjct: 67 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 120 Query: 76 SS 77 + Sbjct: 121 GT 122 Score = 42.2 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 555 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 605 >gi|3387902|gb|AAC28634.1| unknown [Homo sapiens] Length = 467 Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|145284584|gb|ABP52039.1| cold shock protein [Psychrobacter sp. BJ3] Length = 27 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KG+GFI + G DVF+H Sbjct: 1 GQVKWFNEAKGFGFIAQD---NGGQDVFVH 27 >gi|90408574|ref|ZP_01216730.1| Cold-shock DNA-binding domain protein [Psychromonas sp. CNPT3] gi|90310328|gb|EAS38457.1| Cold-shock DNA-binding domain protein [Psychromonas sp. CNPT3] Length = 208 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G I +N DKG+GF+ S G F+H + + G ++TY+ VQ + Sbjct: 1 MRSQGKILNWNDDKGFGFVV---SNAGGVSAFVHIKSFQVNARRPVN-GDVITYELVQGN 56 Query: 61 ANGKYSAENLKLVPKSSN 78 +Y A+ +K + + N Sbjct: 57 DQ-RYQAKQVKFLNDAVN 73 >gi|240170464|ref|ZP_04749123.1| cold-shock DNA-binding protein family protein [Mycobacterium kansasii ATCC 12478] Length = 99 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G I W++ ++G+GF+ P + DVF+ S + + EGQ V+Y + Sbjct: 36 GVINWFDDERGFGFVHP---ADGDRDVFIDSSEIVDWPAGGVHEGQHVSYQTGGTRHWPR 92 Query: 65 YSAENL 70 A ++ Sbjct: 93 AQAVHI 98 >gi|69246264|ref|ZP_00603877.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] gi|68195365|gb|EAN09814.1| Cold-shock protein, DNA-binding [Enterococcus faecium DO] Length = 52 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Query: 39 ASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 G L EGQ VT+D ++D G +A +K Sbjct: 20 QGDGFKTLEEGQAVTFDVEESD-RGPQAANVVK 51 >gi|55731729|emb|CAH92569.1| hypothetical protein [Pongo abelii] Length = 767 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSDFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|226953538|ref|ZP_03824002.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|294649474|ref|ZP_06726898.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194] gi|226835716|gb|EEH68099.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|292824644|gb|EFF83423.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194] Length = 97 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 18/78 (23%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-----QLVTYDYV 57 ++G +K YNPDKG+GFI G+TE DVF H S SA EG + V + V Sbjct: 6 YQGKVKQYNPDKGFGFI---GTTEG--DVFFHISDFPSA------EGEPKRNEKVKFAVV 54 Query: 58 QNDANGKYSAENLKLVPK 75 +N GK+ A ++ V Sbjct: 55 ENQ--GKFKAVQIERVDP 70 >gi|167470786|ref|ZP_02335490.1| cold shock DNA-binding domain protein [Yersinia pestis FV-1] Length = 46 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 FL SA+AS G L +G V ++ N A G +A + + Sbjct: 7 FLILSAIASNGFKTLADGLRVEFEIT-NGAKGPSAANVIAI 46 >gi|262369347|ref|ZP_06062675.1| cold-shock DNA-binding domain-containing protein [Acinetobacter johnsonii SH046] gi|262315415|gb|EEY96454.1| cold-shock DNA-binding domain-containing protein [Acinetobacter johnsonii SH046] Length = 97 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 8/61 (13%) Query: 3 HRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 ++G +K YN DKG+GFI +PEG DVF H S + + V ++ V+N Sbjct: 6 YQGKVKQYNADKGFGFISSPEG------DVFFHISDFPADS-GEPKRNERVKFNVVENGD 58 Query: 62 N 62 Sbjct: 59 R 59 >gi|4689156|gb|AAD27787.1|AF077054_1 unr protein [Homo sapiens] Length = 770 Score = 48.8 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVAPDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 657 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 707 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 4/59 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIK 91 >gi|195998678|ref|XP_002109207.1| hypothetical protein TRIADDRAFT_20474 [Trichoplax adhaerens] gi|190587331|gb|EDV27373.1| hypothetical protein TRIADDRAFT_20474 [Trichoplax adhaerens] Length = 116 Score = 48.8 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAE 68 ++ DKG+GFI PE S + +F+H S + + L G V + K A Sbjct: 46 FHRDKGHGFIKPEDSNDL---IFVHISDINGE--YVLKAGDAVKFKTCPLPPKCDKLQAV 100 Query: 69 NLKLV 73 ++ +V Sbjct: 101 DVTIV 105 >gi|265766785|ref|ZP_06094614.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263253162|gb|EEZ24638.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 146 Score = 48.8 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G I+++N KGYGF+ + G+ F H S+ + + EG VT++ + Sbjct: 84 MGRIEYFNAAKGYGFV---KDADCGEKYFFHISSAPA----TIAEGDRVTFEIERGMRG- 135 Query: 64 KYSAENLKLV 73 +A + +V Sbjct: 136 -MNAVRISIV 144 >gi|262280387|ref|ZP_06058171.1| cold-shock DNA-binding domain-containing protein [Acinetobacter calcoaceticus RUH2202] gi|262258165|gb|EEY76899.1| cold-shock DNA-binding domain-containing protein [Acinetobacter calcoaceticus RUH2202] Length = 209 Score = 48.8 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ +KGYGFI P+ + + VFLH A G + G + Y + + Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLIILD 56 Query: 60 DANGKYSAENLKLVPKSS 77 + G++ A+ + + S Sbjct: 57 E-RGRFRAQQVTYLKASQ 73 >gi|269214459|ref|ZP_05986599.2| cold-shock DNA-binding domain protein [Neisseria lactamica ATCC 23970] gi|269209733|gb|EEZ76188.1| cold-shock DNA-binding domain protein [Neisseria lactamica ATCC 23970] Length = 204 Score = 48.8 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDANGKY 65 +KW + +KGYGFI +G ++F H S + + E V ++ V +D G++ Sbjct: 19 VKW-DDEKGYGFIRIDG---GNKEIFCHISDFSPRNPRPEINE--AVGFEVV-SDGKGRF 71 Query: 66 SAENLKLVPKS 76 SA+ ++ + + Sbjct: 72 SAKQIRYLNRE 82 >gi|239994473|ref|ZP_04714997.1| integral membrane protein [Alteromonas macleodii ATCC 27126] Length = 165 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G I+ ++ KGYGF+ P G G F H A + G ++ Y+ Q D Sbjct: 1 MKYQGRIQQWDDAKGYGFVEPNG---GGTRAFTHIKAFKQRSRRPVN-GDIIVYEVEQ-D 55 Query: 61 ANGKYSAENLKLVPK 75 NG + A N+ L+ Sbjct: 56 RNGNHRACNISLLKD 70 >gi|86145857|ref|ZP_01064185.1| hypothetical protein MED222_13695 [Vibrio sp. MED222] gi|85836312|gb|EAQ54442.1| hypothetical protein MED222_13695 [Vibrio sp. MED222] Length = 155 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 ++ ++W + ++G+GFI + E D+F+H S G + G V + Sbjct: 1 MNGKIVRWVD-ERGFGFINSD---ELKGDIFVHISKF-RKGYRSPKVGDSVEFQL 50 >gi|89256155|ref|YP_513517.1| cold shock protein (DNA-binding) [Francisella tularensis subsp. holarctica LVS] gi|156502190|ref|YP_001428255.1| cold shock DNA-binding domain-containing protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010573|ref|ZP_02275504.1| cold shock protein [Francisella tularensis subsp. holarctica FSC200] gi|254367479|ref|ZP_04983505.1| cold shock protein (DNA-binding) [Francisella tularensis subsp. holarctica 257] gi|290953272|ref|ZP_06557893.1| cold shock DNA-binding domain-containing protein [Francisella tularensis subsp. holarctica URFT1] gi|295313478|ref|ZP_06804074.1| cold shock DNA-binding domain-containing protein [Francisella tularensis subsp. holarctica URFT1] gi|89143986|emb|CAJ79219.1| cold shock protein (DNA-binding) [Francisella tularensis subsp. holarctica LVS] gi|134253295|gb|EBA52389.1| cold shock protein (DNA-binding) [Francisella tularensis subsp. holarctica 257] gi|156252793|gb|ABU61299.1| cold shock DNA-binding domain protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 143 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 9/76 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62 +G +K+YN DKGYGFI S ES D F ++ + G V ++ Q+ Sbjct: 2 QGIVKFYNKDKGYGFI---YSEESEKDFFF---SINDWKNPTVPNGSDDVEFEVAQSKKG 55 Query: 63 GKYSAENLKLVPKSSN 78 A N+KL+ + + Sbjct: 56 --EKAINIKLLKSAED 69 >gi|332184237|gb|AEE26491.1| Cold shock protein [Francisella cf. novicida 3523] Length = 143 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-QLVTYDYVQNDAN 62 +G++K+YN DKGYGFI S ES D F S + + G V ++ Q+ Sbjct: 2 QGTVKFYNKDKGYGFI---YSEESEKDFF--FS-INDWKNPTVPNGSDDVEFEVAQSKKG 55 Query: 63 GKYSAENLKLVPKSSN 78 A ++KL+ + + Sbjct: 56 --EKAISIKLLKSAED 69 >gi|227509389|ref|ZP_03939438.1| possible cold-shock protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512213|ref|ZP_03942262.1| possible cold-shock protein [Lactobacillus buchneri ATCC 11577] gi|227084607|gb|EEI19919.1| possible cold-shock protein [Lactobacillus buchneri ATCC 11577] gi|227191101|gb|EEI71168.1| possible cold-shock protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 93 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K YN G+GFIT + GD++F ++A + G V+Y V+ Sbjct: 23 MLYGKVKTYNAKNGFGFITQDQ----GDNLFFFKNAFHGEDYSRIVPGIRVSYVVVEGQ- 77 Query: 62 NGKYSAENLKLVPKSSN 78 G +A+ ++V ++ Sbjct: 78 KGPQAAKA-QIVEEAGE 93 >gi|291394305|ref|XP_002713505.1| PREDICTED: DNA-binding protein B-like [Oryctolagus cuniculus] Length = 301 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 8/56 (14%) Query: 18 FITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAEN 69 FI ++ +DVF+H++A+ L ++ +G+ V +D V+ + G +A Sbjct: 51 FI---NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE-KGAEAANV 102 >gi|71652991|ref|XP_815141.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70880174|gb|EAN93290.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 458 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 21/49 (42%) Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 D+F+H+S + G L+ G V + + A +++ +S Sbjct: 278 DIFVHQSYIQMQGFRALSVGDKVVFRIGVLPGKKAHQAVSVQRTQESGK 326 >gi|322823854|gb|EFZ29482.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 458 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 21/49 (42%) Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 D+F+H+S + G L+ G V + + A +++ +S Sbjct: 278 DIFVHQSYIQMQGFRALSVGDKVVFRIGVLPGKKAHQAVSVQRTQESGK 326 >gi|71657728|ref|XP_817375.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70882562|gb|EAN95524.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 458 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 21/49 (42%) Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 D+F+H+S + G L+ G V + + A +++ +S Sbjct: 278 DIFVHQSYIQMQGFRALSVGDKVVFRIGVLPGKKAHQAVSVQRTQESGK 326 >gi|331004619|ref|ZP_08328084.1| hypothetical protein HMPREF0491_02946 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410488|gb|EGG89918.1| hypothetical protein HMPREF0491_02946 [Lachnospiraceae oral taxon 107 str. F0167] Length = 737 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 ++G+GFI E D F H S V L EG+++ ++ D GK A N++ Sbjct: 11 ERGFGFI----LGEDKKDYFFHISQVKYCSWGELAEGEVLEFE--TKDVKGKLQAFNIR 63 >gi|328707104|ref|XP_003243299.1| PREDICTED: cold shock domain-containing protein E1-like isoform 2 [Acyrthosiphon pisum] Length = 944 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF+T E E G +F H S V + G+ L +G LV + V N +GK S N Sbjct: 819 DAIKGLFGFLTHE--VEGGKKLFFHTSEV-TDGIK-LYQGDLVEFVLVVNQRSGKSSGCN 874 Query: 70 LKLVPKSSN 78 + + + N Sbjct: 875 VTKISSAEN 883 Score = 39.5 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 151 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAP 206 Query: 76 S 76 Sbjct: 207 E 207 Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 7/66 (10%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDANGKY--SAENLK 71 G+GFI VF + + +L G V Y +N NG SAEN++ Sbjct: 663 GFGFIETIALDSE---VFFRYANLNEPS-ASLELGMEVEYTLSTRNTGNGGSCASAENVR 718 Query: 72 LVPKSS 77 ++P S Sbjct: 719 ILPPGS 724 >gi|225709220|gb|ACO10456.1| Cold shock domain-containing protein C2 [Caligus rogercresseyi] gi|225711724|gb|ACO11708.1| Cold shock domain-containing protein C2 [Caligus rogercresseyi] Length = 189 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 20/38 (52%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41 G++K++ +G+GF+TP + F+H S + Sbjct: 87 EGTVKYFCRSRGFGFLTPNKPVNGNKEFFMHISDIEGE 124 >gi|149758597|ref|XP_001494108.1| PREDICTED: similar to Y-box protein 3 short [Equus caballus] Length = 138 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQN 59 RGSIK +N Y FI+ + E DVF+H++A+ ++ G++V D VQ Sbjct: 17 RGSIKRFNVKNRYSFISRHDTQE---DVFVHQTAITRNNPHKYQRSVGVGEMVELDVVQG 73 Query: 60 DAN 62 Sbjct: 74 KPG 76 >gi|323457293|gb|EGB13159.1| hypothetical protein AURANDRAFT_60508 [Aureococcus anophagefferens] Length = 670 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +IK + P+KG+GF T G DVF HRS+V+ + + L G VT ++ K Sbjct: 252 TIKSWRPEKGFGFCTVPGEA---KDVFFHRSSVSGS-VDALRAGAEVTVTVGRDGRGRKQ 307 >gi|297519352|ref|ZP_06937738.1| Cold shock-like protein cspC [Escherichia coli OP50] Length = 31 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFL 33 +G +KW+N KG+GFITP + DVF+ Sbjct: 5 KGQVKWFNESKGFGFITP---ADGSKDVFV 31 >gi|261379495|ref|ZP_05984068.1| cold shock protein [Neisseria subflava NJ9703] gi|284797958|gb|EFC53305.1| cold shock protein [Neisseria subflava NJ9703] Length = 198 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +KW++ KGYG+I +E G + + + A L G VT++ + G Sbjct: 2 NGKVKWFSESKGYGYIV----SEEGKEYYFTVKHIQGAELP--HNGDAVTFE-ARTSKRG 54 Query: 64 KYSAENLKLVPKSSN 78 A + + K+S Sbjct: 55 PV-AGTVVITEKASE 68 >gi|328707106|ref|XP_001948689.2| PREDICTED: cold shock domain-containing protein E1-like isoform 1 [Acyrthosiphon pisum] Length = 900 Score = 48.4 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF+T E E G +F H S V + G+ L +G LV + V N +GK S N Sbjct: 775 DAIKGLFGFLTHE--VEGGKKLFFHTSEV-TDGIK-LYQGDLVEFVLVVNQRSGKSSGCN 830 Query: 70 LKLVPKSSN 78 + + + N Sbjct: 831 VTKISSAEN 839 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 107 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAP 162 Query: 76 S 76 Sbjct: 163 E 163 Score = 34.2 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 7/66 (10%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDANGKY--SAENLK 71 G+GFI VF + + +L G V Y +N NG SAEN++ Sbjct: 619 GFGFIETIALDSE---VFFRYANLNEPS-ASLELGMEVEYTLSTRNTGNGGSCASAENVR 674 Query: 72 LVPKSS 77 ++P S Sbjct: 675 ILPPGS 680 >gi|55731342|emb|CAH92385.1| hypothetical protein [Pongo abelii] Length = 311 Score = 48.4 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 67 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 120 Query: 76 SS 77 + Sbjct: 121 GT 122 >gi|156383918|ref|XP_001633079.1| predicted protein [Nematostella vectensis] gi|156220144|gb|EDO41016.1| predicted protein [Nematostella vectensis] Length = 700 Score = 48.4 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 14 KG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 KG +GFI E E G ++F H S VA L G V + VQ GK SA N++ Sbjct: 644 KGQFGFIGHEN--EEGKNLFFHISEVAEN--VELQAGDEVEFFVVQ-KRGGKLSAVNVRK 698 Query: 73 V 73 + Sbjct: 699 I 699 Score = 36.9 bits (85), Expect = 0.98, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 YGFI E +F H S L +L G V + + + K A N+ L+ Sbjct: 13 YGFIQ---CCERELRIFFHYSQYKGD-LDDLRIGDEVEFGVSCDQRSKKPVAVNIVLL 66 >gi|326530806|dbj|BAK01201.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 149 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 +RG IK + +KG+GFI P+G E VFLH S + EG +V++ Sbjct: 65 YRGVIKNFCRNKGHGFIQPDGEAEP---VFLHISDIEGEWCP--KEGDVVSF 111 >gi|328707108|ref|XP_003243300.1| PREDICTED: cold shock domain-containing protein E1-like isoform 3 [Acyrthosiphon pisum] Length = 893 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF+T E E G +F H S V + G+ L +G LV + V N +GK S N Sbjct: 768 DAIKGLFGFLTHE--VEGGKKLFFHTSEV-TDGIK-LYQGDLVEFVLVVNQRSGKSSGCN 823 Query: 70 LKLVPKSSN 78 + + + N Sbjct: 824 VTKISSAEN 832 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 100 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAP 155 Query: 76 S 76 Sbjct: 156 E 156 Score = 33.8 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 7/66 (10%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDANGKY--SAENLK 71 G+GFI VF + + +L G V Y +N NG SAEN++ Sbjct: 612 GFGFIETIALDSE---VFFRYANLNEPS-ASLELGMEVEYTLSTRNTGNGGSCASAENVR 667 Query: 72 LVPKSS 77 ++P S Sbjct: 668 ILPPGS 673 >gi|225708686|gb|ACO10189.1| Cold shock domain-containing protein C2 [Caligus rogercresseyi] Length = 189 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 20/38 (52%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41 G++K++ +G+GF+TP + F+H S + Sbjct: 87 EGTVKYFCRSRGFGFLTPNKPVNGNKEFFMHISDIEGE 124 >gi|50956442|gb|AAT90749.1| CspA [Bifidobacterium animalis subsp. lactis] Length = 44 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 31 VFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 VF+H S++ + G L +G LV YD D G+ + +K+ Sbjct: 1 VFVHYSSIEAEGFKALRQGDLVEYDSKPTD-KGELATRVVKI 41 >gi|145284596|gb|ABP52045.1| cold shock protein [Moritella sp. 2-5-10-1] Length = 26 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 4/30 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH 34 G +KW+N KG+GFI + SG+DVF+H Sbjct: 1 GMVKWFNDSKGFGFIQRD----SGEDVFVH 26 >gi|301782271|ref|XP_002926552.1| PREDICTED: protein lin-28 homolog A-like [Ailuropoda melanoleuca] Length = 232 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 18/58 (31%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G KW+N G+GF+T + G +L EG+ V + + ++ Sbjct: 87 GVCKWFNVRVGFGFLT------------------RTEGFRSLKEGEAVEFTFKKSAKG 126 >gi|218709272|ref|YP_002416893.1| hypothetical protein VS_1279 [Vibrio splendidus LGP32] gi|218322291|emb|CAV18421.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 155 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 ++ ++W + ++G+GFI + E D+F+H S G + G V + Sbjct: 1 MNGKIVRWVD-ERGFGFINSD---ELKGDIFVHISKF-RKGYRSPKVGDSVEF 48 >gi|220934585|ref|YP_002513484.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995895|gb|ACL72497.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 204 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G I + D+G+GFI P G +VF+H + + + ++VTYD V +D Sbjct: 1 MRAKGRIYDWKDDRGFGFIRP---NVGGKEVFVHIRSFNNRTRRPVR-NEIVTYDLVIDD 56 Query: 61 ANGKYSAENL 70 G+ AE + Sbjct: 57 Q-GRPRAEKV 65 >gi|149577832|ref|XP_001517851.1| PREDICTED: similar to cold shock domain containing E1, RNA-binding [Ornithorhynchus anatinus] Length = 687 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 37.2 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|213021626|ref|ZP_03336073.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213608020|ref|ZP_03368846.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 38 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%) Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 H SA+ S L E Q V + Q G + + L Sbjct: 1 HFSAIQSNEFRTLNENQEVEFSAEQG-PKGPSAVNVVAL 38 >gi|50086376|ref|YP_047886.1| putative cold shock protein [Acinetobacter sp. ADP1] gi|49532352|emb|CAG70064.1| putative cold shock protein [Acinetobacter sp. ADP1] Length = 208 Score = 48.0 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ DKGYGFI P S + VFLH A G + G + Y + + Sbjct: 1 MRDQGRLVEWFD-DKGYGFIQPNDSQKGR--VFLHIRDFARKGPRPIV-GCALEYLVILD 56 Query: 60 DANGKYSAENL 70 + G++ A + Sbjct: 57 EQ-GRHRAIQV 66 >gi|74008938|ref|XP_537423.2| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis familiaris] Length = 993 Score = 48.0 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Query: 24 STESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAENL 70 ++ +DVF+H +A+ L ++ +G+ V +D V+ G+ +A + Sbjct: 689 QNDTKEDVFVHLTAIKKNNPWKYLHSVGDGETVEFDVVEGQ-KGEEAANVI 738 >gi|294651837|ref|ZP_06729130.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194] gi|292822268|gb|EFF81178.1| cold shock protein [Acinetobacter haemolyticus ATCC 19194] Length = 205 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ DKGYGFI P + + VFLH A G + G + Y + + Sbjct: 1 MRDQGRLVEWFD-DKGYGFIQPNDAFKDR--VFLHIKDFARPGPRPIV-GCALEYLVILD 56 Query: 60 DANGKYSAENLKLVPKSS 77 + G+Y A+ + + S Sbjct: 57 E-RGRYRAQQVTYLKASQ 73 >gi|226953687|ref|ZP_03824151.1| cold shock protein [Acinetobacter sp. ATCC 27244] gi|226835559|gb|EEH67942.1| cold shock protein [Acinetobacter sp. ATCC 27244] Length = 205 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ DKGYGFI P + + VFLH A G + G + Y + + Sbjct: 1 MRDQGRLVEWFD-DKGYGFIQPNDAFKDH--VFLHIKDFARPGPRPIV-GCALEYLVILD 56 Query: 60 DANGKYSAENLKLVPKSS 77 + G+Y A+ + + S Sbjct: 57 E-RGRYRAQQVTYLKASQ 73 >gi|299768495|ref|YP_003730521.1| hypothetical protein AOLE_01225 [Acinetobacter sp. DR1] gi|298698583|gb|ADI89148.1| hypothetical protein AOLE_01225 [Acinetobacter sp. DR1] Length = 209 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ +KGYGFI P+ + + VFLH A G + G + Y + + Sbjct: 1 MRDQGRLVEWFD-EKGYGFIQPDDAEKER--VFLHIKDFARPGPRPII-GCALEYLIILD 56 Query: 60 DANGKYSAENLKLVPKSS 77 + G++ A+ + + S Sbjct: 57 EQ-GRFRAQQVTYLKASQ 73 >gi|71895719|ref|NP_001025700.1| cold shock domain containing E1, RNA-binding [Xenopus (Silurana) tropicalis] gi|63100223|gb|AAH95920.1| cold shock domain containing E1, RNA-binding [Xenopus (Silurana) tropicalis] Length = 799 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI E +F H V G+ L G V + + N GK S N+ L+ K Sbjct: 686 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSGCNVTLISK 741 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 36 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSADRRTGKPIAVKLVKIKT 91 Query: 76 S 76 Sbjct: 92 E 92 >gi|192360925|ref|YP_001982618.1| Cold-shock' DNA-binding domain-containing protein [Cellvibrio japonicus Ueda107] gi|190687090|gb|ACE84768.1| 'Cold-shock' DNA-binding domain protein [Cellvibrio japonicus Ueda107] Length = 106 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Query: 6 SIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 ++K W+ DKGYGF+ E D+ +H S + + L G+ V +D N Sbjct: 4 TVKCWF-ADKGYGFLN--NGGEFSKDIMVHVSELKNCEY--LKPGRTVEFDCDFNQKG-- 56 Query: 65 YSAENLKLVPKSSN 78 A+N+ LV + + Sbjct: 57 LIAKNVHLVYEEQS 70 >gi|326669944|ref|XP_002663141.2| PREDICTED: cold shock domain-containing protein E1 [Danio rerio] Length = 836 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + + NGK A +++L+P+ Sbjct: 214 FGFIER---GDVVKEIFFHYSEFKGD-LEALQAGDDVEFTIKE--RNGKEVATDVRLLPQ 267 Query: 76 SS 77 + Sbjct: 268 GT 269 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFIT E +F H V + L G V + + N GK SA N++ V + Sbjct: 723 FGFITYEVG--ESKKLFFHVKEVQDS--LELQAGDEVEFSVILNQRTGKCSACNVRRVSE 778 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKIGDDVEFEVSSDRRTGKPIAVKLVKIKA 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|126313513|ref|XP_001362186.1| PREDICTED: similar to cold shock domain containing E1, RNA-binding, isoform 1 [Monodelphis domestica] Length = 798 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735 Score = 36.9 bits (85), Expect = 0.95, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|222874693|gb|EEF11824.1| predicted protein [Populus trichocarpa] Length = 127 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Query: 40 SAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 +G L EGQ V ++ VQ GK A N++ Sbjct: 1 MSGFKTLKEGQRVVFEIVQG-PKGKQ-ATNIQ 30 >gi|300176002|emb|CBK22219.2| unnamed protein product [Blastocystis hominis] Length = 126 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 8/73 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS-AGL-FN--LTEGQLVTYDYVQN 59 +G +KWY+ GYGFI+ E+ D F+H++ + S L + V + Sbjct: 22 KGVVKWYDGYMGYGFIS--TLDETPVDYFVHKTQIYSLDKFPRTPILFNKEEVEFAVCDT 79 Query: 60 DANGKYSAENLKL 72 + +AE + L Sbjct: 80 EKG--KAAEEVSL 90 >gi|281341041|gb|EFB16625.1| hypothetical protein PANDA_016210 [Ailuropoda melanoleuca] Length = 183 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 18/58 (31%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G KW+N G+GF+T + G +L EG+ V + + ++ Sbjct: 38 GVCKWFNVRVGFGFLT------------------RTEGFRSLKEGEAVEFTFKKSAKG 77 >gi|148232966|ref|NP_001090026.1| cold shock domain containing E1, RNA-binding [Xenopus laevis] gi|63101211|gb|AAH94485.1| MGC114719 protein [Xenopus laevis] Length = 781 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S + L G V + D NGK A +++++P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-IEALQPGDDVEFTI--KDRNGKEVATDVRILPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI E +F H V G+ L G V + + N GK S N+ L+ K Sbjct: 668 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSGCNVTLISK 723 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 36 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSADRRTGKPIAVKLVKIKT 91 Query: 76 S 76 Sbjct: 92 E 92 >gi|262373360|ref|ZP_06066639.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] gi|262313385|gb|EEY94470.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] Length = 235 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQN 59 M G IK Y+ ++G+GFI +G DVF H ++G + G+ + + V++ Sbjct: 1 MFVEGKIKKYDTERGFGFIKVDGHQ---TDVFFHIKDFPKASGEPKI--GEKLKFLIVED 55 Query: 60 DANGKYSAENLKLVPKSS 77 + +A ++L K + Sbjct: 56 NNGKFKAANIVRLDQKQA 73 >gi|156537407|ref|XP_001606818.1| PREDICTED: hypothetical protein [Nasonia vitripennis] Length = 893 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF+ E + G +F H S V L G V + V N +GK SA N Sbjct: 778 DAVKGPFGFLAYE--VDEGKKLFFHMSEVCDD--AKLKPGDQVEFVLVTNQRSGKSSACN 833 Query: 70 LKLVPKS 76 + + ++ Sbjct: 834 VVRLSEA 840 Score = 40.3 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 135 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKISP 190 Query: 76 S 76 Sbjct: 191 E 191 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S S L G V + +Q NGK A N+ +P Sbjct: 286 FGFIER---ADVVKEIFFHFSEAKSMK-DELRLGDDVEF-IIQT-RNGKEVACNITKLPP 339 Query: 76 SS 77 S Sbjct: 340 GS 341 >gi|126313515|ref|XP_001362268.1| PREDICTED: similar to cold shock domain containing E1, RNA-binding, isoform 2 [Monodelphis domestica] Length = 767 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|126337665|ref|XP_001363238.1| PREDICTED: similar to Calcium regulated heat stable protein 1, 24kDa [Monodelphis domestica] Length = 146 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ-ND 60 +++G K + KG+GFITP + G D+FL S V + EG VTY Sbjct: 61 IYKGVCKCFYRSKGHGFITP---ADGGPDIFLLISDVEGEYMP--MEGDEVTYKMCSIPP 115 Query: 61 ANGKYSAENLKL 72 N K+ A + + Sbjct: 116 KNEKHQAVEVVI 127 >gi|327271517|ref|XP_003220534.1| PREDICTED: cold shock domain-containing protein E1-like isoform 1 [Anolis carolinensis] Length = 796 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.2 bits (99), Expect = 0.025, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 683 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 733 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAIKLVKIKT 92 Query: 76 SS 77 + Sbjct: 93 ET 94 >gi|166712861|ref|ZP_02244068.1| cold shock domain protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 191 Score = 47.3 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G++ +N D G+GF P + GDD+F+H SA G G +++++ + D Sbjct: 1 MRAHGTLTRWNTDPGFGFFPP---AQPGDDLFVHLSAFPR-GFEAPRIGGVLSFE-TEPD 55 Query: 61 ANGKYSAENL 70 +G+ A + Sbjct: 56 TDGRTRAVRI 65 >gi|326933723|ref|XP_003212950.1| PREDICTED: cold shock domain-containing protein E1-like isoform 1 [Meleagris gallopavo] Length = 796 Score = 47.3 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 197 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.2 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 683 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 733 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|209694996|ref|YP_002262925.1| cold-shock protein [Aliivibrio salmonicida LFI1238] gi|208008948|emb|CAQ79171.1| cold-shock protein [Aliivibrio salmonicida LFI1238] Length = 176 Score = 47.3 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + ++W + KG+GFI ++VF H S G G V + Sbjct: 1 MEGQVVRWIDN-KGFGFIRGNDPDND-NEVFAHISQFKK-GYRRPRVGDEVVFLI--GYE 55 Query: 62 NGKYSAENLKLV 73 +GK A + L+ Sbjct: 56 DGKKVANTISLI 67 >gi|227524055|ref|ZP_03954104.1| hypothetical protein HMPREF0519_1764 [Lactobacillus hilgardii ATCC 8290] gi|227088794|gb|EEI24106.1| hypothetical protein HMPREF0519_1764 [Lactobacillus hilgardii ATCC 8290] Length = 78 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G +K YN G+GFIT + GD++F ++A + G V+Y V+ Sbjct: 8 MLYGKVKTYNAKNGFGFITQDQ----GDNLFFFKNAFHGEDYSRIVPGIRVSYVVVEGQ- 62 Query: 62 NGKYSAENLKLVPKSSN 78 G +A+ ++V ++ Sbjct: 63 KGPQAAKA-QIVEEAGE 78 >gi|327271519|ref|XP_003220535.1| PREDICTED: cold shock domain-containing protein E1-like isoform 2 [Anolis carolinensis] Length = 812 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 213 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 266 Query: 76 SS 77 + Sbjct: 267 GT 268 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 699 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 749 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 84 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAIKLVKIKT 139 Query: 76 SS 77 + Sbjct: 140 ET 141 >gi|300864970|ref|ZP_07109802.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300337026|emb|CBN54952.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 187 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 IKW N D+G+GFI P + G +VFLH SAV + G G + Y + +GK+ Sbjct: 11 IKW-NDDRGFGFIKP---SAGGREVFLHISAVKTKGRR-PKIGDTIFYKLTRGT-DGKFC 64 Query: 67 AENLKL 72 A + + Sbjct: 65 ASDASI 70 >gi|332026461|gb|EGI66589.1| Cold shock domain-containing protein E1 [Acromyrmex echinatior] Length = 881 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF+ E + G +F H S V L G V + V N GK SA N Sbjct: 766 DAMKGPFGFLAYE--VDEGRKLFFHVSEVRD--HVTLQPGDQVEFVLVTNQRTGKSSACN 821 Query: 70 LKLVPKSSN 78 + + + Sbjct: 822 VTRLSDTVQ 830 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S S L G V + +Q NGK A N+ +P Sbjct: 281 FGFIER---ADVVKEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 334 Query: 76 SS 77 S Sbjct: 335 GS 336 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 132 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDAVEFEMTYDRRTGKPIASTVSKIGP 187 Query: 76 SS 77 S Sbjct: 188 VS 189 >gi|319786851|ref|YP_004146326.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317465363|gb|ADV27095.1| cold-shock DNA-binding domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 198 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G I +N ++G+GFI G ++ VF+H + G VTY+ Q D Sbjct: 1 MRLAGKIIEWNDERGFGFIAQNGGSQR---VFVHVRDFEGRARRPVV-GDPVTYEPGQ-D 55 Query: 61 ANGKYSAENLK 71 A G+ A ++ Sbjct: 56 ARGRPMATRVR 66 >gi|307823226|ref|ZP_07653456.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307736001|gb|EFO06848.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 190 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G + +N DKG+GFI PE VF+H SA+ + + G ++ Y + +G Sbjct: 6 KGKLNRWNDDKGFGFIIPENGNNE---VFIHISALKNMSRRPVV-GDVILYQLHVGN-DG 60 Query: 64 KYSAENLKL 72 K A N K+ Sbjct: 61 KNKAINAKI 69 >gi|313661504|ref|NP_001186365.1| cold shock domain-containing protein E1 [Danio rerio] Length = 798 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + + NGK A +++L+P+ Sbjct: 195 FGFIER---GDVVKEIFFHYSEFKGD-LEALQAGDDVEFTIKE--RNGKEVATDVRLLPQ 248 Query: 76 SS 77 + Sbjct: 249 GT 250 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFIT E +F H V + L G V + + N GK SA N++ V + Sbjct: 685 FGFITYEVG--ESKKLFFHVKEVQDS--LELQAGDEVEFSVILNQRTGKCSACNVRRVSE 740 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKIGDDVEFEVSSDRRTGKPIAVKLVKIKA 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|28493015|ref|NP_787176.1| cold shock protein B [Tropheryma whipplei str. Twist] gi|28572227|ref|NP_789007.1| cold shock protein B [Tropheryma whipplei TW08/27] gi|28410358|emb|CAD66744.1| cold shock protein B [Tropheryma whipplei TW08/27] gi|28476055|gb|AAO44145.1| cold shock protein B [Tropheryma whipplei str. Twist] Length = 125 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++++YN ++G+GF+ ++ G+ VFL A+ G+ +L+ G V Y A Sbjct: 1 MPLGTVRFYNKERGFGFVV----SDDGESVFLPAKAL-PDGVSDLSPGTRVDY----GAA 51 Query: 62 NGKYSAENLKL 72 GK ++ L L Sbjct: 52 LGKKGSQVLSL 62 >gi|222035900|emb|CAP78645.1| cold shock protein [Escherichia coli LF82] gi|312948773|gb|ADR29600.1| cold-shock DNA-binding domain-containing protein [Escherichia coli O83:H1 str. NRG 857C] Length = 148 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 12/73 (16%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL--TEGQLVTYDYVQNDA 61 G IKW++ +KGYGFIT + D + H S + +L +GQ ++ ++ + Sbjct: 2 EGVIKWFSEEKGYGFITAANNI----DYYFHVSDIKG----SLLPEKGQNAHFN-AESTS 52 Query: 62 NGKYSAENLKLVP 74 G + A+N+ L Sbjct: 53 KG-HRAKNITLTK 64 >gi|332827423|gb|EGK00175.1| hypothetical protein HMPREF9455_03507 [Dysgonomonas gadei ATCC BAA-286] Length = 150 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 7/59 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G ++++NPDKGYGFI GST+ F H S+ + ++T+G +VT++ + Sbjct: 85 NGRVEYFNPDKGYGFIKHTGSTDK---YFFHISSAPA----SITDGNMVTFELERGQKG 136 >gi|308802462|ref|XP_003078544.1| unnamed protein product [Ostreococcus tauri] gi|116056997|emb|CAL51424.1| unnamed protein product [Ostreococcus tauri] Length = 480 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 GYGFI D+F H S +A + GQ V + + G+ A +++ P Sbjct: 160 GYGFI---KCCSRSKDLFFHFSELAEDA-DSAKPGQEVRFVATEEPRRGQLVATSVRYAP 215 Query: 75 KSS 77 K S Sbjct: 216 KGS 218 >gi|326933725|ref|XP_003212951.1| PREDICTED: cold shock domain-containing protein E1-like isoform 2 [Meleagris gallopavo] Length = 765 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 41.9 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 652 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 702 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|291398204|ref|XP_002715791.1| PREDICTED: upstream of NRAS isoform 3 [Oryctolagus cuniculus] Length = 844 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI ++F H S + L G V + D NGK A +++L+P+ Sbjct: 243 FGFIERGDIV---KEIFFHYSEFKGD-IEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 296 Query: 76 SS 77 + Sbjct: 297 GT 298 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 731 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 781 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A +KLV Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIA--VKLVKI 136 Query: 76 SSN 78 S Sbjct: 137 KSE 139 >gi|291398202|ref|XP_002715790.1| PREDICTED: upstream of NRAS isoform 2 [Oryctolagus cuniculus] Length = 798 Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI ++F H S + L G V + D NGK A +++L+P+ Sbjct: 197 FGFIERGDIV---KEIFFHYSEFKGD-IEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 250 Query: 76 SS 77 + Sbjct: 251 GT 252 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 685 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 735 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A +KLV Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIA--VKLVKI 90 Query: 76 SSN 78 S Sbjct: 91 KSE 93 >gi|218512161|ref|ZP_03509001.1| cold shock protein [Rhizobium etli 8C-3] Length = 37 Score = 47.3 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 26/35 (74%) Query: 37 AVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 AV AG+ +L +GQ ++YD V+++ +GK SA+ L+ Sbjct: 1 AVERAGMRDLKDGQKLSYDLVRDNKSGKMSADRLQ 35 >gi|258623684|ref|ZP_05718669.1| cold shock domain-containing protein [Vibrio mimicus VM573] gi|258584036|gb|EEW08800.1| cold shock domain-containing protein [Vibrio mimicus VM573] Length = 183 Score = 47.3 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAENL 70 ++G+GFI + DVF+H S G G V + N SA + Sbjct: 38 DERGFGFIKSDDLD---GDVFVHISKF-PQGYRRPQVGDHVEFHLANNQPKLSAASARLI 93 Query: 71 KLVPKSSN 78 + P+ +N Sbjct: 94 GVEPQKTN 101 >gi|15790740|ref|NP_280564.1| cold shock protein [Halobacterium sp. NRC-1] gi|169236482|ref|YP_001689682.1| cold shock protein [Halobacterium salinarum R1] gi|10581282|gb|AAG20044.1| cold shock protein [Halobacterium sp. NRC-1] gi|167727548|emb|CAP14336.1| putative cold shock protein [Halobacterium salinarum R1] Length = 69 Score = 47.3 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G + ++N GYGFI T + +DVF H V G +L EGQ V +D ++ Sbjct: 1 MASGKVDFFNDTGGYGFISTDADDVDDDEDVFFHMEDV---GGPDLEEGQEVEFDI-ESS 56 Query: 61 ANGKYSAENLK 71 G + ++ Sbjct: 57 PKGPRATNLVR 67 >gi|330466661|ref|YP_004404404.1| putative DNA binding protein [Verrucosispora maris AB-18-032] gi|328809632|gb|AEB43804.1| putative DNA binding protein [Verrucosispora maris AB-18-032] Length = 135 Score = 47.3 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G I ++ +GYGFI P + G+DVF+H + + G V ++ V +D Sbjct: 1 MGKIIRFDEVRGYGFIAP---SAGGEDVFVHANDF-GEHRHLVRVGLPVEFEAVDSDRG- 55 Query: 64 KYSAENLKLVPKS 76 A ++++V Sbjct: 56 -LKAASVRIVESE 67 >gi|225077021|ref|ZP_03720220.1| hypothetical protein NEIFLAOT_02073 [Neisseria flavescens NRL30031/H210] gi|224951578|gb|EEG32787.1| hypothetical protein NEIFLAOT_02073 [Neisseria flavescens NRL30031/H210] Length = 191 Score = 46.9 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDANGKYS 66 KW + +KGYGFI +G ++F H S + + E V ++ V +D G++S Sbjct: 7 KW-DDEKGYGFIRIDG---GNKEIFCHISNFSPRNPRPEINE--AVGFEVV-SDGKGRFS 59 Query: 67 AENLKLVPKS 76 A+ ++ + + Sbjct: 60 AKQIRYLNRE 69 >gi|304378|gb|AAA18017.1| CCAAT-binding protein [Gallus gallus] Length = 348 Score = 46.9 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 8/63 (12%) Query: 11 NPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYS 66 N GYG ++ +DVF+H++A+ L ++ +G+ V +D V+ + G + Sbjct: 61 NVRNGYG---LMNRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE-KGAEA 116 Query: 67 AEN 69 A Sbjct: 117 ANV 119 >gi|153873831|ref|ZP_02002279.1| cold-shock DNA-binding domain family protein [Beggiatoa sp. PS] gi|152069703|gb|EDN67719.1| cold-shock DNA-binding domain family protein [Beggiatoa sp. PS] Length = 225 Score = 46.9 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G I + DKG+GFI PE + G+ +F H S++ + + G V YD + DA G Sbjct: 2 KGKILQWKDDKGFGFILPE---KGGEKLFFHISSIKNQS-RHPQVGDAVLYDS-ERDAQG 56 Query: 64 KYSAENLKL 72 + A+++ L Sbjct: 57 RLRAKSVVL 65 >gi|291398200|ref|XP_002715789.1| PREDICTED: upstream of NRAS isoform 1 [Oryctolagus cuniculus] Length = 767 Score = 46.9 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI ++F H S + L G V + D NGK A +++L+P+ Sbjct: 166 FGFIERGDIV---KEIFFHYSEFKGD-IEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 219 Query: 76 SS 77 + Sbjct: 220 GT 221 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 654 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 704 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A +KLV Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIA--VKLVKI 90 Query: 76 SSN 78 S Sbjct: 91 KSE 93 >gi|330884367|gb|EGH18516.1| hypothetical protein Pgy4_36727 [Pseudomonas syringae pv. glycinea str. race 4] Length = 23 Score = 46.9 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 11/20 (55%), Positives = 16/20 (80%) Query: 2 VHRGSIKWYNPDKGYGFITP 21 G++KW+N +KG+GFITP Sbjct: 4 RQTGTVKWFNDEKGFGFITP 23 >gi|330876787|gb|EGH10936.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 24 Score = 46.9 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 17/21 (80%) Query: 2 VHRGSIKWYNPDKGYGFITPE 22 G++KW+N +KG+GFITP+ Sbjct: 4 RQTGTVKWFNDEKGFGFITPQ 24 >gi|291398206|ref|XP_002715792.1| PREDICTED: upstream of NRAS isoform 4 [Oryctolagus cuniculus] Length = 813 Score = 46.9 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI ++F H S + L G V + D NGK A +++L+P+ Sbjct: 212 FGFIERGDIV---KEIFFHYSEFKGD-IEALQPGDDVEFTI--KDRNGKEVATDVRLLPQ 265 Query: 76 SS 77 + Sbjct: 266 GT 267 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 700 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 750 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A +KLV Sbjct: 83 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIA--VKLVKI 136 Query: 76 SSN 78 S Sbjct: 137 KSE 139 >gi|96771841|emb|CAI78423.1| putative cold-shock protein [Streptomyces ambofaciens ATCC 23877] gi|114050278|emb|CAK51313.1| putative cold-shock protein [Streptomyces ambofaciens] gi|117164385|emb|CAJ87929.1| putative cold-shock protein [Streptomyces ambofaciens ATCC 23877] Length = 72 Score = 46.9 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 8/68 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFL-HRS-AVASAGLFNLTEGQLVTYDYVQN 59 + G++ N ++G+GF + +G G DVF+ + S +++ +G L++G V +D + Sbjct: 7 MASGTM---NAERGFGFTSQDG---GGPDVFVRYFSFSISGSGFRELSKGGQVFFDAAAD 60 Query: 60 DANGKYSA 67 A + A Sbjct: 61 PAVARLPA 68 >gi|289755774|ref|ZP_06515152.1| LOW QUALITY PROTEIN: cold-shock domain-containing protein [Mycobacterium tuberculosis EAS054] gi|289696361|gb|EFD63790.1| LOW QUALITY PROTEIN: cold-shock domain-containing protein [Mycobacterium tuberculosis EAS054] Length = 68 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 17/20 (85%) Query: 2 VHRGSIKWYNPDKGYGFITP 21 + +G++KW+N +KG+G ++P Sbjct: 1 MPQGTVKWFNAEKGFGLLSP 20 >gi|178847413|pdb|2YTX|A Chain A, Solution Structure Of The Second Cold-Shock Domain Of The Human Kiaa0885 Protein (Unr Protein) Length = 97 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S L L G V + D NGK A +++L+P+ Sbjct: 30 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDVRLLPQ 83 Query: 76 SS 77 + Sbjct: 84 GT 85 >gi|225076846|ref|ZP_03720045.1| hypothetical protein NEIFLAOT_01897 [Neisseria flavescens NRL30031/H210] gi|224951832|gb|EEG33041.1| hypothetical protein NEIFLAOT_01897 [Neisseria flavescens NRL30031/H210] Length = 108 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 13/74 (17%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL----TEGQLVTYDY 56 M + G+I +N +G+G T E ++G ++F +A A L EGQ ++++ Sbjct: 1 MRYYGTITRWNSKRGFGAATIE---DTGQEIF-----LALAAFTTLTRLPAEGQHISFNI 52 Query: 57 VQNDANGKYSAENL 70 + G+ AEN+ Sbjct: 53 TEG-RRGRKEAENV 65 >gi|71281569|ref|YP_266916.1| cold shock DNA-binding domain-containing protein [Colwellia psychrerythraea 34H] gi|71147309|gb|AAZ27782.1| cold-shock DNA-binding domain family protein [Colwellia psychrerythraea 34H] Length = 201 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G + +N DK +GFITP GS GD +F+H++A+ + ++++ +Q++ Sbjct: 1 MRLTGKLIRWNTDKAFGFITPNGS---GDTIFIHKTALKNRN-RTPKINDIISFSVIQDN 56 Query: 61 ANGKYSAE 68 G+Y A+ Sbjct: 57 Q-GRYCAD 63 >gi|325287710|ref|YP_004263500.1| Cold-shock protein DNA-binding protein [Cellulophaga lytica DSM 7489] gi|324323164|gb|ADY30629.1| Cold-shock protein DNA-binding protein [Cellulophaga lytica DSM 7489] Length = 149 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G + +++ KG+GFI E+ + F+H S + + ++E V+Y+ + Sbjct: 87 VRNGKVSFFDTSKGFGFII---DAENNEKYFVHVSGL----IDEISENDKVSYELERGMK 139 Query: 62 NGKYSAENLKLV 73 +A +K + Sbjct: 140 G--MNAVRVKRI 149 >gi|331234220|ref|XP_003329770.1| hypothetical protein PGTG_11520 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309308760|gb|EFP85351.1| hypothetical protein PGTG_11520 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 946 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDY 56 G K YN DKG GF+ + + DV +H + + S +L +G++V Y Sbjct: 290 GRCKMYNCDKGVGFLIDDRLDQVPQDVKIHWTDIFSDQEFKSLAKGEIVEYTL 342 >gi|302524815|ref|ZP_07277157.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] gi|302433710|gb|EFL05526.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4] Length = 71 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M HRG + + D+G+G E G ++ H S + + G +LT G+ V + + + Sbjct: 1 MEHRGKVVRWEVDEGWG--ILESPAVDGP-IWAHFSMIEADGFRSLTAGEDVRFAVERAE 57 Query: 61 ANG 63 +G Sbjct: 58 QDG 60 >gi|313159124|gb|EFR58499.1| cold-shock DNA-binding domain protein [Alistipes sp. HGB5] Length = 145 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 9/67 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG ++ +N DKGYGFI STE F H S + + EG LVT++ + Sbjct: 84 RGRVEHFNTDKGYGFIKDLDSTEK---YFFHISNAPAD----IAEGALVTFETERGQRG- 135 Query: 64 KYSAENL 70 +A N+ Sbjct: 136 -LNAVNI 141 >gi|257053888|ref|YP_003131721.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM 12940] gi|256692651|gb|ACV12988.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM 12940] Length = 64 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50 + G++ ++N GYGFI + + + DVF H V G +L EGQ Sbjct: 1 MATGTVDFFNDTGGYGFIETDDADD---DVFFHMEDV---GGPDLEEGQ 43 >gi|260770385|ref|ZP_05879318.1| predicted membrane protein [Vibrio furnissii CIP 102972] gi|260615723|gb|EEX40909.1| predicted membrane protein [Vibrio furnissii CIP 102972] Length = 197 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G I +N KGYGFIT + G +F H S V G + V + + + Sbjct: 1 MAISGKISEWNDAKGYGFITVDNYR--GK-IFFHISDVQGHGRR-PKINEAVHFKLAK-E 55 Query: 61 ANGKYSAENLK 71 +NG A +++ Sbjct: 56 SNGSLRAIDIE 66 >gi|284166832|ref|YP_003405111.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] gi|284016487|gb|ADB62438.1| cold-shock DNA-binding domain protein [Haloterrigena turkmenica DSM 5511] Length = 64 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50 + +G++ ++N GYGFI + + E DVF H V G +L EGQ Sbjct: 1 MAQGTVAFFNDTGGYGFIETDDADE---DVFFHMEDV---GGPDLEEGQ 43 >gi|302531785|ref|ZP_07284127.1| predicted protein [Streptomyces sp. AA4] gi|302440680|gb|EFL12496.1| predicted protein [Streptomyces sp. AA4] Length = 146 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 8/64 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG++ +N GYG+I P+ + G+DV+ + + G +T GQ V ++ + A+ Sbjct: 84 RGTVLIFNVRDGYGYIRPD---DGGEDVY--FDSRDAEG--PITSGQRVEFE-DKPQADA 135 Query: 64 KYSA 67 + +A Sbjct: 136 RPAA 139 >gi|321475491|gb|EFX86454.1| hypothetical protein DAPPUDRAFT_7593 [Daphnia pulex] Length = 114 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G IK + KG+GFI + G+D+F+H S + G + G V++ +Q Sbjct: 34 IEHGVIKSFCRVKGHGFI----KKDDGEDIFVHVSDI--DGEYVPRVGDQVSFRKLQIPP 87 Query: 62 N-GKYSAENLKL 72 K+ A ++++ Sbjct: 88 KMEKFQAVHVQI 99 >gi|88803163|ref|ZP_01118689.1| cold shock protein, putative DNA-binding protein [Polaribacter irgensii 23-P] gi|88780729|gb|EAR11908.1| cold shock protein, putative DNA-binding protein [Polaribacter irgensii 23-P] Length = 150 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V +G + +++ KG+GFI E+ + F H S + + ++ E V+++ + Sbjct: 88 VRKGKVSFFDSSKGFGFII---DMENNEKYFTHVSGL----IDDIVENDKVSFEL-ERGM 139 Query: 62 NGKYSAENLKL 72 G + + K+ Sbjct: 140 RGMNAVKVTKI 150 >gi|315181452|gb|ADT88365.1| predicted membrane protein [Vibrio furnissii NCTC 11218] Length = 197 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G I +N KGYGFIT + G +F H S V G + V + + + Sbjct: 1 MAISGKISEWNDAKGYGFITVDNYR--GK-IFFHISDVQGHGRR-PKINEAVHFKLAK-E 55 Query: 61 ANGKYSAENLK 71 +NG A +++ Sbjct: 56 SNGSLRAIDIE 66 >gi|47222740|emb|CAG01707.1| unnamed protein product [Tetraodon nigroviridis] Length = 834 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFIT E +F H V GL L G V + V N GK+SA N++ + + Sbjct: 646 FGFITYEVG--ESKKLFFHVKEVQ-DGLE-LQTGDEVEFTVVLNQRTGKFSACNVRRISE 701 Query: 76 S 76 + Sbjct: 702 A 702 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQELKIGDDVEFEVAPDRRTGKPIAVKLLKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|262380474|ref|ZP_06073628.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|262297920|gb|EEY85835.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 206 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ +KGYGFI P + VFLH A G + G + Y V Sbjct: 2 MRDQGRLVEWFD-EKGYGFIQPNEPDKGR--VFLHIKDFARPGPRPII-GCALEY-LVIL 56 Query: 60 DANGKYSAENLK 71 DA G+Y A+ + Sbjct: 57 DAQGRYRAQQVT 68 >gi|255320259|ref|ZP_05361444.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] gi|255302698|gb|EET81930.1| cold-shock DNA-binding domain protein [Acinetobacter radioresistens SK82] Length = 206 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ +KGYGFI P + VFLH A G + G + Y V Sbjct: 2 MRDQGRLVEWFD-EKGYGFIQPNEPDKGR--VFLHIKDFARPGPRPII-GCALEY-LVIL 56 Query: 60 DANGKYSAENLK 71 DA G+Y A+ + Sbjct: 57 DAQGRYRAQQVT 68 >gi|262373361|ref|ZP_06066640.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] gi|262313386|gb|EEY94471.1| cold shock domain-containing protein CspD [Acinetobacter junii SH205] Length = 97 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61 ++G +K YNPDKG+GFI D+F H S AS G + V + ++N Sbjct: 6 YQGKVKQYNPDKGFGFIATTEG-----DIFFHISDFPASEG--EPKRNEKVKFVALEN-- 56 Query: 62 NGKYSAENLKLVPK 75 NGK+ A ++ V Sbjct: 57 NGKFKAVQIERVDP 70 >gi|66566223|ref|XP_397449.2| PREDICTED: cold shock domain-containing protein E1 [Apis mellifera] Length = 890 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF+ E + G +F H S V + L G V + + N GK SA N Sbjct: 775 DAVKGPFGFLAYE--VDEGKKLFFHMSEVRDHAI--LQPGDQVEFVLITNQRTGKSSACN 830 Query: 70 LKLVPKSSN 78 + + + Sbjct: 831 VTRLSDAVQ 839 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 135 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKIAP 190 Query: 76 S 76 Sbjct: 191 E 191 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S S L G V + +Q NGK A N+ +P Sbjct: 286 FGFIER---ADVVKEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 339 Query: 76 SS 77 S Sbjct: 340 GS 341 >gi|312198421|ref|YP_004018482.1| Cold-shock protein DNA-binding protein [Frankia sp. EuI1c] gi|311229757|gb|ADP82612.1| Cold-shock protein DNA-binding protein [Frankia sp. EuI1c] Length = 137 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL-TEGQLVTYDYVQNDANGK-YSA 67 ++ +GYGFI P G G+D+FLH + + +L T G + ++ Q D K A Sbjct: 4 FDQVRGYGFIAPTG---GGEDIFLHANDLLVD--KHLVTAGVTMEFEVEQGDRGPKATGA 58 Query: 68 ENLKLVPKSS 77 ++ P ++ Sbjct: 59 RLVRSAPGAA 68 >gi|119946476|ref|YP_944156.1| hypothetical protein Ping_2851 [Psychromonas ingrahamii 37] gi|119865080|gb|ABM04557.1| hypothetical protein DUF1294 [Psychromonas ingrahamii 37] Length = 207 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G + +N DKG+GF+ P G G+ F+H A S L + G ++ Y+ V++ Sbjct: 1 MKLQGKVTNWNDDKGFGFVDPNG---GGNRAFIHIKAFTSGSLRPVN-GDIIIYELVRDQ 56 Query: 61 ANGKYSAENLK 71 N +Y A+ +K Sbjct: 57 NN-RYQADKIK 66 >gi|325109282|ref|YP_004270350.1| cold-shock DNA-binding protein family [Planctomyces brasiliensis DSM 5305] gi|324969550|gb|ADY60328.1| cold-shock DNA-binding protein family [Planctomyces brasiliensis DSM 5305] Length = 65 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query: 29 DDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 D+F H S + + +L EGQ V+++ + AEN+KLV Sbjct: 23 KDLFFHMSNLEGSRFDDLQEGQRVSFNEGSGPKGPR--AENVKLV 65 >gi|16760655|ref|NP_456272.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764598|ref|NP_460213.1| cold shock-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141586|ref|NP_804928.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161614377|ref|YP_001588342.1| hypothetical protein SPAB_02126 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|200390149|ref|ZP_03216760.1| conserved domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207857251|ref|YP_002243902.1| cold shock protein CspH [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213053010|ref|ZP_03345888.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418364|ref|ZP_03351430.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213580471|ref|ZP_03362297.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609947|ref|ZP_03369773.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646143|ref|ZP_03376196.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855314|ref|ZP_03383554.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238910937|ref|ZP_04654774.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289803991|ref|ZP_06534620.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|60391952|sp|P0A1D9|CSPH_SALTY RecName: Full=Cold shock-like protein CspH gi|60391953|sp|P0A1E0|CSPH_SALTI RecName: Full=Cold shock-like protein CspH gi|25296114|pir||AC0718 probable cold shock protein cspH [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|6180041|gb|AAF05759.1|AF191799_1 major cold shock protein CspH [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] gi|2228815|gb|AAB61944.1| major cold-shock protein CspH [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419762|gb|AAL20172.1| homology with cold shock proteins [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502951|emb|CAD02116.1| putative cold shock protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137213|gb|AAO68777.1| putative cold shock protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161363741|gb|ABX67509.1| hypothetical protein SPAB_02126 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|199602594|gb|EDZ01140.1| conserved domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|206709054|emb|CAR33385.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246455|emb|CBG24265.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993093|gb|ACY87978.1| cold shock-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157784|emb|CBW17277.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912232|dbj|BAJ36206.1| cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086288|emb|CBY96062.1| Cold shock-like protein cspG CPS-G [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322616634|gb|EFY13543.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619851|gb|EFY16725.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622419|gb|EFY19264.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627943|gb|EFY24733.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632959|gb|EFY29702.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636795|gb|EFY33498.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641394|gb|EFY38033.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645169|gb|EFY41698.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650110|gb|EFY46524.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655684|gb|EFY51986.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660008|gb|EFY56247.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665424|gb|EFY61612.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667598|gb|EFY63759.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673608|gb|EFY69710.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677534|gb|EFY73598.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679801|gb|EFY75840.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687274|gb|EFY83246.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323129513|gb|ADX16943.1| putative cold shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192391|gb|EFZ77621.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199469|gb|EFZ84562.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203657|gb|EFZ88679.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208800|gb|EFZ93738.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214140|gb|EFZ98900.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217776|gb|EGA02491.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218913|gb|EGA03424.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224984|gb|EGA09240.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229579|gb|EGA13702.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232802|gb|EGA16898.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240160|gb|EGA24204.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242853|gb|EGA26874.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247785|gb|EGA31724.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254331|gb|EGA38148.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256109|gb|EGA39846.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259431|gb|EGA43067.1| cold shock protein (CspH) [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267027|gb|EGA50512.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272131|gb|EGA55545.1| cold shock-like protein CspF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332988135|gb|AEF07118.1| cold shock-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 70 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G G ITP ++ DV +H SA L G V + + N G Sbjct: 6 TGIVKTFDCKSGKGLITP---SDGRKDVQVHISACRQHETEALIPGIRVEFCRI-NGLRG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PTAANV 67 >gi|161618395|ref|YP_001592282.1| cold shock protein [Brucella canis ATCC 23365] gi|161335206|gb|ABX61511.1| cold shock protein [Brucella canis ATCC 23365] Length = 36 Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 21/33 (63%) Query: 39 ASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 AGL +L EGQ V Y+ V + +GK +A NL+ Sbjct: 2 ERAGLHSLVEGQKVGYEVVADRRSGKSAAANLE 34 >gi|207738540|ref|YP_002256933.1| transcription regulator protein [Ralstonia solanacearum IPO1609] gi|206591908|emb|CAQ58814.1| transcription regulator protein [Ralstonia solanacearum IPO1609] Length = 137 Score = 46.1 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 13/18 (72%) Query: 1 MVHRGSIKWYNPDKGYGF 18 + G++KW+N KG+GF Sbjct: 42 CMATGTVKWFNETKGFGF 59 >gi|333008660|gb|EGK28126.1| cold shock-like protein cspG [Shigella flexneri K-272] Length = 70 Score = 46.1 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G GFI P + +V +H SA + L G V + V N G Sbjct: 6 TGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRDVEVLIPGLRVEFCRV-NGLRG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PTAANV 67 >gi|224827101|ref|ZP_03700198.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] gi|224600767|gb|EEG06953.1| cold-shock DNA-binding domain protein [Lutiella nitroferrum 2002] Length = 202 Score = 46.1 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36 M +G + ++ +G+GFITP G G +VF+H S Sbjct: 1 MRFQGRLTRWDDARGFGFITPNG---GGAEVFVHIS 33 >gi|241758644|ref|ZP_04756758.1| cold-shock DNA-binding domain protein [Neisseria flavescens SK114] gi|241321155|gb|EER57351.1| cold-shock DNA-binding domain protein [Neisseria flavescens SK114] Length = 169 Score = 46.1 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 13/74 (17%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL----TEGQLVTYDY 56 M + G+I +N +G+G T E ++G ++F +A A L EGQ ++++ Sbjct: 1 MRYYGTITRWNSKRGFGAATIE---DTGQEIF-----LALAAFTTLTRLPAEGQHISFNI 52 Query: 57 VQNDANGKYSAENL 70 + G+ AEN+ Sbjct: 53 TEG-RRGRKEAENV 65 >gi|145629455|ref|ZP_01785253.1| cold shock-like protein CspD [Haemophilus influenzae 22.1-21] gi|144978298|gb|EDJ88062.1| cold shock-like protein CspD [Haemophilus influenzae 22.1-21] Length = 34 Score = 46.1 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVF 32 + G +KW+N KG+GFI+ EG D+F Sbjct: 1 MEIGIVKWFNNAKGFGFISAEGVD---ADIF 28 >gi|302668611|ref|YP_003833059.1| cold shock domain protein CspD3 [Butyrivibrio proteoclasticus B316] gi|302397575|gb|ADL36477.1| cold shock domain protein CspD3 [Butyrivibrio proteoclasticus B316] Length = 286 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G IK Y D+G+GFI + D F H S V G ++ G V +D N+ Sbjct: 3 GIIKKYYDDRGFGFIKADDR-----DFFFHVSDVV-NGTNSIVTGIRVRFDVGSNNKG-- 54 Query: 65 YSAENLKLVPKS 76 AEN+K++ S Sbjct: 55 EKAENVKIISDS 66 >gi|325279878|ref|YP_004252420.1| Cold-shock protein DNA-binding protein [Odoribacter splanchnicus DSM 20712] gi|324311687|gb|ADY32240.1| Cold-shock protein DNA-binding protein [Odoribacter splanchnicus DSM 20712] Length = 150 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V +G ++++N KGYGFI TE F H S L L E +V +D + Sbjct: 83 VRKGRVEYFNVSKGYGFIKDLSGTEK---YFFHVS----NALSELVENAIVIFDL-ERGK 134 Query: 62 NGKYSAENLKLVPKSSN 78 G +A N+ + ++++ Sbjct: 135 RG-MNAINICISERTAD 150 >gi|319637794|ref|ZP_07992560.1| cold-shock DNA-binding domain-containing protein [Neisseria mucosa C102] gi|317400949|gb|EFV81604.1| cold-shock DNA-binding domain-containing protein [Neisseria mucosa C102] Length = 169 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 13/74 (17%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL----TEGQLVTYDY 56 M + G+I +N +G+G T E ++G ++F +A A L EGQ ++++ Sbjct: 1 MRYYGTITRWNSKRGFGAATIE---DTGQEIF-----LALAAFTTLTRLPAEGQHISFNI 52 Query: 57 VQNDANGKYSAENL 70 + G+ AEN+ Sbjct: 53 TEG-RRGRKEAENV 65 >gi|221114043|ref|XP_002157672.1| PREDICTED: similar to Cold shock domain-containing protein E1, partial [Hydra magnipapillata] Length = 425 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 9/64 (14%) Query: 14 KG-YGFITPEGSTESGDDVFLHRSA---VASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 KG +GFI+ + + G +F H S + S+ L G V++ V N NGK SA Sbjct: 307 KGQFGFISYDN--DEGKRIFFHMSELIDIHSSDLRT---GDEVSFAIVNNHKNGKKSAIR 361 Query: 70 LKLV 73 ++ + Sbjct: 362 VQKI 365 >gi|157093143|gb|ABV22226.1| cold shock protein-like [Karlodinium micrum] gi|157093145|gb|ABV22227.1| cold shock protein-like [Karlodinium micrum] Length = 210 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++G IK + KGYGFIT + G D+F +S V+ L L+ Q T+ D Sbjct: 73 YKGRIKSFVQQKGYGFITCDALQ--GQDIFFMKSDVSERALPILSANQDCTFTLHLGDRG 130 Query: 63 GKYSAENLKLVPKSSN 78 A+++ LV + N Sbjct: 131 --PQAKDITLVGAAGN 144 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G++K YN KG+GF+ +G DVFL + G ++ G + + GK Sbjct: 6 GTVKSYNVHKGWGFVEC-----NGTDVFLMHKEL---GGKVVSPGDKLKLTITTGE-KGK 56 Query: 65 YSAENLKLVPKSSN 78 A N+ ++ + Sbjct: 57 PQASNVSVISSAGE 70 >gi|91225301|ref|ZP_01260469.1| hypothetical protein V12G01_21078 [Vibrio alginolyticus 12G01] gi|91189940|gb|EAS76212.1| hypothetical protein V12G01_21078 [Vibrio alginolyticus 12G01] Length = 155 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 ++W + ++G+GFI S E D+F+H S G G V + K S Sbjct: 6 VRWVD-ERGFGFI---NSNELDGDIFVHVSKFKK-GYRRPRIGDQVEFQLA--SVQPKLS 58 Query: 67 AENLKLV---PKSSN 78 AE+ +LV P+ SN Sbjct: 59 AESAQLVGVKPQKSN 73 >gi|281347702|gb|EFB23286.1| hypothetical protein PANDA_020808 [Ailuropoda melanoleuca] Length = 341 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 5/50 (10%) Query: 24 STESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSAEN 69 ++ +DVF+H++A+ L ++ +G+ V +D V+ + G +A Sbjct: 80 GNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE-KGAEAANV 128 >gi|170725465|ref|YP_001759491.1| cold-shock DNA-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810812|gb|ACA85396.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC 51908] Length = 203 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQ 58 M +G ++W + KG+GFI P G VF+H + L + VT+ + Sbjct: 1 MKFKGKLVQW-DDVKGFGFIQPLGQQTQ---VFVHIKSFKYQPRRPQLQD--TVTFTLTK 54 Query: 59 NDANGKYSAENLKLVPKSSN 78 D G+ +A K++ + Sbjct: 55 -DKQGRETAHQAKIIDAKAK 73 >gi|332526887|ref|ZP_08402980.1| cold-shock DNA-binding domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332111329|gb|EGJ11313.1| cold-shock DNA-binding domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 210 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 +N D+G+G I ST+ G +F+H S + Q V+++ Q GK + Sbjct: 15 WNDDRGFGTIE---STQGGKPIFMHISEWPRDAPRPRVD-QRVSFEIEQG-PKGKRATRI 69 Query: 70 LKLVP 74 LVP Sbjct: 70 QPLVP 74 >gi|331698343|ref|YP_004334582.1| Cold-shock protein DNA-binding protein [Pseudonocardia dioxanivorans CB1190] gi|326953032|gb|AEA26729.1| Cold-shock protein DNA-binding protein [Pseudonocardia dioxanivorans CB1190] Length = 66 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 5/65 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++ W++P + G IT + G +V + + + G +L G VT+ V+ Sbjct: 1 MVDGTVTWFDPRRRIGVIT----LDDGTEVSVSGAQIDGGGQQSLCPGDRVTFTLVEG-P 55 Query: 62 NGKYS 66 +G ++ Sbjct: 56 DGPHA 60 >gi|330959678|gb|EGH59938.1| cold shock domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 268 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + + KGYGFI+ + G+ F+H+ V G LT GQ V + G Sbjct: 12 EGEVVSFVVSKGYGFISGD----DGERYFVHQKDVQ--GGETLTSGQRVAF-VPTPSPKG 64 Query: 64 KYSAENL 70 + + Sbjct: 65 SKARHVV 71 >gi|76803990|gb|ABA55933.1| cold shock domain family protein [Vibrio sp. DAT722] Length = 155 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 10/75 (13%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 ++W + ++G+GFI S E D+F+H S G G V + + K S Sbjct: 6 VRWVD-ERGFGFI---NSNELDGDIFVHVSKFKK-GYRRPRIGDQVEFQLA--SVHPKLS 58 Query: 67 AENLKLV---PKSSN 78 AE+ +LV P+ SN Sbjct: 59 AESAQLVGVKPQKSN 73 >gi|84387020|ref|ZP_00990043.1| predicted membrane protein [Vibrio splendidus 12B01] gi|84378095|gb|EAP94955.1| predicted membrane protein [Vibrio splendidus 12B01] Length = 194 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLF-NLTEGQLVTYDYVQNDAN 62 +G I +N DKGYGFI+ G VF+H S+V ++ L + V ++ + D+ Sbjct: 2 KGKIIEWNDDKGYGFISSLGGELK---VFIHASSVKNSRRRPALYDN--VMFEVKE-DSK 55 Query: 63 GKYSAENLKL 72 G+++A+N+ + Sbjct: 56 GRFNAQNVVI 65 >gi|328853198|gb|EGG02338.1| hypothetical protein MELLADRAFT_91428 [Melampsora larici-populina 98AG31] Length = 929 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDY 56 G K YN DKG GF+ + E DV +H + + S +L +G++V Y Sbjct: 417 GRCKMYNCDKGVGFLIDDDLEEVPYDVKIHWTDLYSDQEFKSLAKGEVVEYTL 469 >gi|257053889|ref|YP_003131722.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM 12940] gi|256692652|gb|ACV12989.1| cold-shock DNA-binding domain protein [Halorhabdus utahensis DSM 12940] Length = 64 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50 + G++ ++N GYGFI E + E DVF H V G +L EGQ Sbjct: 1 MATGTVDFFNDTGGYGFIETEDADE---DVFFHMEDV---GGPDLEEGQ 43 >gi|297520670|ref|ZP_06939056.1| major cold shock protein [Escherichia coli OP50] Length = 26 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 16/21 (76%) Query: 4 RGSIKWYNPDKGYGFITPEGS 24 G +KW+N DKG+GFITP+ Sbjct: 6 TGIVKWFNADKGFGFITPDDG 26 >gi|301106296|ref|XP_002902231.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262098851|gb|EEY56903.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 1293 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%) Query: 15 GYGFITPEGSTESG--DDVFLHRSAVA-SAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 G+GFI P + +++F H + L L EG V Y ++ K A + Sbjct: 923 GFGFIQPAQTVPGTLEENLFFHIKEITTGQTLAELKEGTEVQYTVFVDEKKKKNRATAIS 982 Query: 72 LVPKSS 77 +VP + Sbjct: 983 VVPTGT 988 >gi|119897463|ref|YP_932676.1| hypothetical protein azo1172 [Azoarcus sp. BH72] gi|119669876|emb|CAL93789.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 51 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 3/37 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37 M H+G I + DKG+GFITP G+ VF+H SA Sbjct: 1 MRHQGHISSWKDDKGFGFITP---AAGGEKVFVHISA 34 >gi|51244089|ref|YP_063973.1| hypothetical protein DP0237 [Desulfotalea psychrophila LSv54] gi|50875126|emb|CAG34966.1| hypothetical cold-shock protein [Desulfotalea psychrophila LSv54] Length = 195 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%) Query: 4 RGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G I KW ++G+GFI E S +S +F+H SA A G ++Y ++ D N Sbjct: 7 QGKIEKWV-GERGFGFIKSEKSAKS---IFVHISAFDRAISRAPRVGDTISY-CLRTDHN 61 Query: 63 GKYSAEN 69 GK A + Sbjct: 62 GKTKAVD 68 >gi|326424037|ref|NP_761361.2| Cold shock domain family protein [Vibrio vulnificus CMCP6] gi|319999414|gb|AAO10888.2| Cold shock domain family protein [Vibrio vulnificus CMCP6] Length = 161 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAENL 70 ++G+GFI + DVF+H S G G V + N SA + Sbjct: 16 DERGFGFIKSDELD---GDVFVHISKF-PQGYRRPQVGDHVEFHLANNQPKLSAASARLI 71 Query: 71 KLVPKSSN 78 + P+ +N Sbjct: 72 GVEPQKTN 79 >gi|77360541|ref|YP_340116.1| cold shock DNA-binding domain-containing protein [Pseudoalteromonas haloplanktis TAC125] gi|76875452|emb|CAI86673.1| putative cold-shock DNA-binding domain [Pseudoalteromonas haloplanktis TAC125] Length = 203 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +++G + +N ++GYGFI S+ D F+H S++ G + ++ D Sbjct: 1 MNKGLLTSWNDNRGYGFI---KSSSVAHDTFIHISSLKHMSRK-PKVGDTIYFEVA-TDP 55 Query: 62 NGKYSAENLKL 72 NGK A N ++ Sbjct: 56 NGKSKAVNCRI 66 >gi|168239159|ref|ZP_02664217.1| conserved domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737414|ref|YP_002114257.1| hypothetical protein SeSA_A1329 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930811|ref|ZP_03221684.1| conserved domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194712916|gb|ACF92137.1| conserved domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288141|gb|EDY27528.1| conserved domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320270|gb|EDZ05474.1| conserved domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 70 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G G ITP ++ DV +H SA + L G V + + N G Sbjct: 6 TGIVKTFDCKSGKGLITP---SDGRKDVQVHISAFSQHETEALIPGIRVEFCRI-NGLRG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PTAANV 67 >gi|256424147|ref|YP_003124800.1| cold-shock DNA-binding domain protein [Chitinophaga pinensis DSM 2588] gi|256039055|gb|ACU62599.1| cold-shock DNA-binding domain protein [Chitinophaga pinensis DSM 2588] Length = 147 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + ++N KG+GFI + S ES VF H + +A + E V++ + G Sbjct: 83 TGVVSFFNLSKGFGFINDDSSKES---VFFHMNQLAHP----VKEKDRVSF-LREKGPRG 134 Query: 64 KYSAENLKLV 73 ++A N+ + Sbjct: 135 -FNAINVTKI 143 >gi|326203825|ref|ZP_08193687.1| Cold-shock protein DNA-binding [Clostridium papyrosolvens DSM 2782] gi|325985923|gb|EGD46757.1| Cold-shock protein DNA-binding [Clostridium papyrosolvens DSM 2782] Length = 436 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G +K Y ++G+GFI + + + H S V N+ EG VT+ ++ Sbjct: 371 KGKVKKYVSERGFGFI-----KDREKEFYFHISDVYQTHQKNVCEGADVTFSIQESTKG- 424 Query: 64 KYSAENLKLV 73 A+ +K+V Sbjct: 425 -PVAKQIKVV 433 >gi|126640824|ref|YP_001083808.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978] gi|184157043|ref|YP_001845382.1| putative cold shock protein [Acinetobacter baumannii ACICU] gi|332872618|ref|ZP_08440586.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii 6014059] gi|126386708|gb|ABO11206.1| putative cold shock protein [Acinetobacter baumannii ATCC 17978] gi|183208637|gb|ACC56035.1| putative cold shock protein [Acinetobacter baumannii ACICU] gi|322506942|gb|ADX02396.1| Putative cold shock protein [Acinetobacter baumannii 1656-2] gi|323516809|gb|ADX91190.1| putative cold shock protein [Acinetobacter baumannii TCDC-AB0715] gi|332739147|gb|EGJ70006.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii 6014059] Length = 97 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61 + G +K YN DKG+GFI+ D+F H S AS G + V + + D Sbjct: 6 YTGRVKQYNADKGFGFISTTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56 Query: 62 NGKYSAENLKLVPK 75 GK+ A ++ + Sbjct: 57 RGKFKAVKIERIDP 70 >gi|95929682|ref|ZP_01312424.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] gi|95134379|gb|EAT16036.1| cold-shock DNA-binding domain protein [Desulfuromonas acetoxidans DSM 684] Length = 214 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M RG+I +N DKGYGFI P ++ +F+H S QLV Y D Sbjct: 8 MRKRGTITSWNKDKGYGFILPNSGSKQ---IFVHIKDF-SNRHRQPEVEQLVNYS-ESVD 62 Query: 61 ANGKYSAENLKLVPKSSN 78 G+ A N V + Sbjct: 63 RQGRPCAINATRVGDGTE 80 >gi|323976632|gb|EGB71720.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TW10509] Length = 70 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G GFI P + +V +H SA L G V + V N G Sbjct: 6 TGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRDAEVLIPGLRVEFCRV-NGLRG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PTAANV 67 >gi|320105220|ref|YP_004180811.1| cold-shock DNA-binding domain-containing protein [Isosphaera pallida ATCC 43644] gi|319752502|gb|ADV64262.1| cold-shock DNA-binding domain protein [Isosphaera pallida ATCC 43644] Length = 222 Score = 44.9 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFN---LTEGQLVTYDYVQND 60 RG + ++P +G+GF+ E + + VF H SA+ SA + G ++++ + D Sbjct: 21 RGVVTRFDPKRGFGFVVVERTRQK---VFFHVSAIRSAAAQSRSQPAPGVVLSFQIDETD 77 Query: 61 ANGKYSAE 68 G + E Sbjct: 78 PRGPRAIE 85 >gi|126734566|ref|ZP_01750312.1| cold shock protein [Roseobacter sp. CCS2] gi|126715121|gb|EBA11986.1| cold shock protein [Roseobacter sp. CCS2] Length = 151 Score = 44.9 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW++ +G+GF+ +G D LH++ + G ++ EG V + Y Q+ NG Sbjct: 1 MKWFDAYRGFGFVVIDGIE---TDFLLHQNILHGFGRTSIAEGSSVEFAY-QSTENGFKI 56 Query: 67 AENLKLVPKS 76 E + P S Sbjct: 57 IEIFAIAPPS 66 Score = 43.4 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 6 SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +KW++P KGYGF+ G E D+F+ + + + L +L G + + + Sbjct: 88 RVKWFDPSKGYGFVNAFGCAE---DIFVGAATLRKSMLGDLQSGDALCVQIAETEGR 141 >gi|15800909|ref|NP_286925.1| cold shock-like protein [Escherichia coli O157:H7 EDL933] gi|15830398|ref|NP_309171.1| cold shock-like protein [Escherichia coli O157:H7 str. Sakai] gi|16128955|ref|NP_415509.1| stress protein, member of the CspA-family [Escherichia coli str. K-12 substr. MG1655] gi|24112401|ref|NP_706911.1| cold shock-like protein [Shigella flexneri 2a str. 301] gi|26247007|ref|NP_753047.1| cold shock-like protein cspH [Escherichia coli CFT073] gi|30062525|ref|NP_836696.1| cold shock-like protein [Shigella flexneri 2a str. 2457T] gi|74311545|ref|YP_309964.1| cold shock-like protein [Shigella sonnei Ss046] gi|82544688|ref|YP_408635.1| cold shock-like protein [Shigella boydii Sb227] gi|82776278|ref|YP_402627.1| cold shock-like protein [Shigella dysenteriae Sd197] gi|89107839|ref|AP_001619.1| stress protein, member of the CspA-family [Escherichia coli str. K-12 substr. W3110] gi|91210079|ref|YP_540065.1| cold shock-like protein H [Escherichia coli UTI89] gi|110641170|ref|YP_668900.1| cold shock-like protein CspH [Escherichia coli 536] gi|110805002|ref|YP_688522.1| cold shock-like protein [Shigella flexneri 5 str. 8401] gi|157158514|ref|YP_001462220.1| cold shock DNA-binding protein [Escherichia coli E24377A] gi|157160507|ref|YP_001457825.1| cold shock DNA-binding protein [Escherichia coli HS] gi|168747397|ref|ZP_02772419.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|168754309|ref|ZP_02779316.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|168763225|ref|ZP_02788232.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|168767486|ref|ZP_02792493.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|168773675|ref|ZP_02798682.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|168781005|ref|ZP_02806012.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|168787494|ref|ZP_02812501.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|168800618|ref|ZP_02825625.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|170020612|ref|YP_001725566.1| cold-shock DNA-binding domain-containing protein [Escherichia coli ATCC 8739] gi|170080647|ref|YP_001729967.1| CspA family stress protein [Escherichia coli str. K-12 substr. DH10B] gi|170684041|ref|YP_001744187.1| cold-shock DNA-binding domain-containing protein CspH [Escherichia coli SMS-3-5] gi|187730710|ref|YP_001880814.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94] gi|188494766|ref|ZP_03002036.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|191166611|ref|ZP_03028440.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|191172410|ref|ZP_03033951.1| cold-shock DNA-binding domain protein CspH [Escherichia coli F11] gi|193066319|ref|ZP_03047369.1| cold shock DNA-binding protein [Escherichia coli E22] gi|193070785|ref|ZP_03051719.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194429846|ref|ZP_03062359.1| cold shock DNA-binding protein [Escherichia coli B171] gi|194438085|ref|ZP_03070178.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|195935246|ref|ZP_03080628.1| CspA family stress protein [Escherichia coli O157:H7 str. EC4024] gi|208807470|ref|ZP_03249807.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208815635|ref|ZP_03256814.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208822271|ref|ZP_03262590.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209400788|ref|YP_002269714.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209918241|ref|YP_002292325.1| cold shock-like protein [Escherichia coli SE11] gi|215486105|ref|YP_002328536.1| stress protein, member of the CspA-family [Escherichia coli O127:H6 str. E2348/69] gi|217324901|ref|ZP_03440985.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|218553575|ref|YP_002386488.1| stress protein, member of the CspA-family [Escherichia coli IAI1] gi|218557879|ref|YP_002390792.1| stress protein, member of the CspA-family [Escherichia coli S88] gi|218694522|ref|YP_002402189.1| stress protein, member of the CspA-family [Escherichia coli 55989] gi|218700499|ref|YP_002408128.1| stress protein, member of the CspA-family [Escherichia coli IAI39] gi|218704405|ref|YP_002411924.1| stress protein, member of the CspA-family [Escherichia coli UMN026] gi|227884059|ref|ZP_04001864.1| cold shock family protein [Escherichia coli 83972] gi|237707033|ref|ZP_04537514.1| cold shock DNA-binding protein [Escherichia sp. 3_2_53FAA] gi|238900248|ref|YP_002926044.1| stress protein, member of the CspA-family [Escherichia coli BW2952] gi|253773982|ref|YP_003036813.1| cold-shock DNA-binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161101|ref|YP_003044209.1| stress protein, member of the CspA-family [Escherichia coli B str. REL606] gi|254792245|ref|YP_003077082.1| stress protein, member of the CspA-family [Escherichia coli O157:H7 str. TW14359] gi|256018752|ref|ZP_05432617.1| stress protein, member of the CspA-family [Shigella sp. D9] gi|256023310|ref|ZP_05437175.1| stress protein, member of the CspA-family [Escherichia sp. 4_1_40B] gi|260843236|ref|YP_003221014.1| stress protein CspH [Escherichia coli O103:H2 str. 12009] gi|260854692|ref|YP_003228583.1| stress protein CspH [Escherichia coli O26:H11 str. 11368] gi|260867197|ref|YP_003233599.1| stress protein CspH [Escherichia coli O111:H- str. 11128] gi|261227160|ref|ZP_05941441.1| stress protein, member of the CspA-family [Escherichia coli O157:H7 str. FRIK2000] gi|261255726|ref|ZP_05948259.1| stress protein CspH [Escherichia coli O157:H7 str. FRIK966] gi|291281987|ref|YP_003498805.1| Cold shock-like protein cspH [Escherichia coli O55:H7 str. CB9615] gi|293409366|ref|ZP_06652942.1| predicted protein [Escherichia coli B354] gi|293414264|ref|ZP_06656913.1| cold shock protein [Escherichia coli B185] gi|293433283|ref|ZP_06661711.1| cold shock-like protein cspH [Escherichia coli B088] gi|297519755|ref|ZP_06938141.1| Cold shock-like protein cspH [Escherichia coli OP50] gi|300819432|ref|ZP_07099629.1| cold-shock DNA-binding domain protein [Escherichia coli MS 107-1] gi|300823952|ref|ZP_07104075.1| cold-shock DNA-binding domain protein [Escherichia coli MS 119-7] gi|300896361|ref|ZP_07114903.1| cold-shock DNA-binding domain protein [Escherichia coli MS 198-1] gi|300902845|ref|ZP_07120793.1| cold-shock DNA-binding domain protein [Escherichia coli MS 84-1] gi|300920967|ref|ZP_07137357.1| cold-shock DNA-binding domain protein [Escherichia coli MS 115-1] gi|300925326|ref|ZP_07141216.1| cold-shock DNA-binding domain protein [Escherichia coli MS 182-1] gi|300929242|ref|ZP_07144721.1| cold-shock DNA-binding domain protein [Escherichia coli MS 187-1] gi|300937664|ref|ZP_07152470.1| cold-shock DNA-binding domain protein [Escherichia coli MS 21-1] gi|300949635|ref|ZP_07163621.1| cold-shock DNA-binding domain protein [Escherichia coli MS 116-1] gi|300957865|ref|ZP_07170041.1| cold-shock DNA-binding domain protein [Escherichia coli MS 175-1] gi|300978252|ref|ZP_07174200.1| cold-shock DNA-binding domain protein [Escherichia coli MS 45-1] gi|300982794|ref|ZP_07176304.1| cold-shock DNA-binding domain protein [Escherichia coli MS 200-1] gi|301022615|ref|ZP_07186486.1| cold-shock DNA-binding domain protein [Escherichia coli MS 196-1] gi|301023110|ref|ZP_07186917.1| cold-shock DNA-binding domain protein [Escherichia coli MS 69-1] gi|301047757|ref|ZP_07194813.1| cold-shock DNA-binding domain protein [Escherichia coli MS 185-1] gi|301302394|ref|ZP_07208525.1| cold-shock DNA-binding domain protein [Escherichia coli MS 124-1] gi|301327178|ref|ZP_07220444.1| cold-shock DNA-binding domain protein [Escherichia coli MS 78-1] gi|301646376|ref|ZP_07246261.1| cold-shock DNA-binding domain protein [Escherichia coli MS 146-1] gi|306812572|ref|ZP_07446765.1| Cold shock-like protein cspH [Escherichia coli NC101] gi|307137621|ref|ZP_07496977.1| Cold shock-like protein cspH [Escherichia coli H736] gi|309795022|ref|ZP_07689442.1| cold-shock DNA-binding domain protein [Escherichia coli MS 145-7] gi|312968953|ref|ZP_07783160.1| cold shock-like protein cspG [Escherichia coli 2362-75] gi|331641520|ref|ZP_08342655.1| major cold shock protein Cspa1 [Escherichia coli H736] gi|331646243|ref|ZP_08347346.1| conserved domain protein [Escherichia coli M605] gi|331657049|ref|ZP_08358011.1| conserved domain protein [Escherichia coli TA206] gi|331662396|ref|ZP_08363319.1| major cold shock protein Cspa1 [Escherichia coli TA143] gi|331667380|ref|ZP_08368244.1| major cold shock protein Cspa1 [Escherichia coli TA271] gi|331672523|ref|ZP_08373312.1| major cold shock protein Cspa1 [Escherichia coli TA280] gi|331676779|ref|ZP_08377475.1| conserved domain protein [Escherichia coli H591] gi|331682494|ref|ZP_08383113.1| major cold shock protein Cspa1 [Escherichia coli H299] gi|332279829|ref|ZP_08392242.1| predicted protein [Shigella sp. D9] gi|71154166|sp|P0A984|CSPH_ECO57 RecName: Full=Cold shock-like protein CspH; Short=CSP-H gi|71154167|sp|P0A983|CSPH_ECOL6 RecName: Full=Cold shock-like protein CspH; Short=CSP-H gi|71154168|sp|P0A982|CSPH_ECOLI RecName: Full=Cold shock-like protein CspH; Short=CSP-H gi|71154169|sp|P0A985|CSPH_SHIFL RecName: Full=Cold shock-like protein CspH; Short=CSP-H gi|12514253|gb|AAG55536.1|AE005292_9 cold shock-like protein [Escherichia coli O157:H7 str. EDL933] gi|26107407|gb|AAN79590.1|AE016758_194 Cold shock-like protein cspH [Escherichia coli CFT073] gi|2226345|gb|AAB61742.1| CspH [Escherichia coli str. K-12 substr. W3110] gi|2367112|gb|AAC74074.1| stress protein, member of the CspA-family [Escherichia coli str. K-12 substr. MG1655] gi|13360604|dbj|BAB34567.1| cold shock-like protein [Escherichia coli O157:H7 str. Sakai] gi|24051275|gb|AAN42618.1| cold shock-like protein [Shigella flexneri 2a str. 301] gi|30040771|gb|AAP16502.1| cold shock-like protein [Shigella flexneri 2a str. 2457T] gi|73855022|gb|AAZ87729.1| cold shock-like protein [Shigella sonnei Ss046] gi|81240426|gb|ABB61136.1| cold shock-like protein [Shigella dysenteriae Sd197] gi|81246099|gb|ABB66807.1| cold shock-like protein [Shigella boydii Sb227] gi|85674811|dbj|BAA35755.2| stress protein, member of the CspA-family [Escherichia coli str. K12 substr. W3110] gi|91071653|gb|ABE06534.1| cold shock-like protein H [Escherichia coli UTI89] gi|110342762|gb|ABG68999.1| cold shock-like protein CspH [Escherichia coli 536] gi|110614550|gb|ABF03217.1| cold shock-like protein [Shigella flexneri 5 str. 8401] gi|157066187|gb|ABV05442.1| cold shock DNA-binding protein [Escherichia coli HS] gi|157080544|gb|ABV20252.1| cold shock DNA-binding protein [Escherichia coli E24377A] gi|169755540|gb|ACA78239.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|169888482|gb|ACB02189.1| stress protein, member of the CspA-family [Escherichia coli str. K-12 substr. DH10B] gi|170521759|gb|ACB19937.1| cold-shock DNA-binding domain protein CspH [Escherichia coli SMS-3-5] gi|187427702|gb|ACD06976.1| cold shock DNA-binding protein [Shigella boydii CDC 3083-94] gi|187770359|gb|EDU34203.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|188017978|gb|EDU56100.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|188489965|gb|EDU65068.1| cold shock DNA-binding protein [Escherichia coli 53638] gi|189001378|gb|EDU70364.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|189358141|gb|EDU76560.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|189363304|gb|EDU81723.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|189366626|gb|EDU85042.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|189372729|gb|EDU91145.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|189377097|gb|EDU95513.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|190903416|gb|EDV63136.1| cold shock DNA-binding protein [Escherichia coli B7A] gi|190907294|gb|EDV66892.1| cold-shock DNA-binding domain protein CspH [Escherichia coli F11] gi|192926026|gb|EDV80670.1| cold shock DNA-binding protein [Escherichia coli E22] gi|192955896|gb|EDV86365.1| cold shock DNA-binding protein [Escherichia coli E110019] gi|194412128|gb|EDX28437.1| cold shock DNA-binding protein [Escherichia coli B171] gi|194423021|gb|EDX39015.1| cold shock DNA-binding protein [Escherichia coli 101-1] gi|208727271|gb|EDZ76872.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208732283|gb|EDZ80971.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208737756|gb|EDZ85439.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209162188|gb|ACI39621.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209774138|gb|ACI85381.1| cold shock-like protein [Escherichia coli] gi|209774140|gb|ACI85382.1| cold shock-like protein [Escherichia coli] gi|209774142|gb|ACI85383.1| cold shock-like protein [Escherichia coli] gi|209774144|gb|ACI85384.1| cold shock-like protein [Escherichia coli] gi|209774146|gb|ACI85385.1| cold shock-like protein [Escherichia coli] gi|209911500|dbj|BAG76574.1| cold shock-like protein [Escherichia coli SE11] gi|215264177|emb|CAS08521.1| stress protein, member of the CspA-family [Escherichia coli O127:H6 str. E2348/69] gi|217321122|gb|EEC29546.1| cold shock DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|218351254|emb|CAU96958.1| stress protein, member of the CspA-family [Escherichia coli 55989] gi|218360343|emb|CAQ97893.1| stress protein, member of the CspA-family [Escherichia coli IAI1] gi|218364648|emb|CAR02334.1| stress protein, member of the CspA-family [Escherichia coli S88] gi|218370485|emb|CAR18292.1| stress protein, member of the CspA-family [Escherichia coli IAI39] gi|218431502|emb|CAR12380.1| stress protein, member of the CspA-family [Escherichia coli UMN026] gi|222032704|emb|CAP75443.1| Cold shock-like protein cspH [Escherichia coli LF82] gi|226898243|gb|EEH84502.1| cold shock DNA-binding protein [Escherichia sp. 3_2_53FAA] gi|227838811|gb|EEJ49277.1| cold shock family protein [Escherichia coli 83972] gi|238863579|gb|ACR65577.1| stress protein, member of the CspA-family [Escherichia coli BW2952] gi|242376802|emb|CAQ31515.1| stress protein, member of the CspA family [Escherichia coli BL21(DE3)] gi|253325026|gb|ACT29628.1| cold-shock DNA-binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973002|gb|ACT38673.1| stress protein, member of the CspA-family [Escherichia coli B str. REL606] gi|253977216|gb|ACT42886.1| stress protein, member of the CspA-family [Escherichia coli BL21(DE3)] gi|254591645|gb|ACT71006.1| stress protein, member of the CspA-family [Escherichia coli O157:H7 str. TW14359] gi|257753341|dbj|BAI24843.1| stress protein CspH [Escherichia coli O26:H11 str. 11368] gi|257758383|dbj|BAI29880.1| stress protein CspH [Escherichia coli O103:H2 str. 12009] gi|257763553|dbj|BAI35048.1| stress protein CspH [Escherichia coli O111:H- str. 11128] gi|260449866|gb|ACX40288.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|281178105|dbj|BAI54435.1| cold shock-like protein [Escherichia coli SE15] gi|281600352|gb|ADA73336.1| Cold shock-like protein cspH [Shigella flexneri 2002017] gi|290761860|gb|ADD55821.1| Cold shock-like protein cspH [Escherichia coli O55:H7 str. CB9615] gi|291324102|gb|EFE63524.1| cold shock-like protein cspH [Escherichia coli B088] gi|291434322|gb|EFF07295.1| cold shock protein [Escherichia coli B185] gi|291469834|gb|EFF12318.1| predicted protein [Escherichia coli B354] gi|294493039|gb|ADE91795.1| cold shock DNA-binding protein [Escherichia coli IHE3034] gi|299881187|gb|EFI89398.1| cold-shock DNA-binding domain protein [Escherichia coli MS 196-1] gi|300300366|gb|EFJ56751.1| cold-shock DNA-binding domain protein [Escherichia coli MS 185-1] gi|300307059|gb|EFJ61579.1| cold-shock DNA-binding domain protein [Escherichia coli MS 200-1] gi|300315436|gb|EFJ65220.1| cold-shock DNA-binding domain protein [Escherichia coli MS 175-1] gi|300359772|gb|EFJ75642.1| cold-shock DNA-binding domain protein [Escherichia coli MS 198-1] gi|300397231|gb|EFJ80769.1| cold-shock DNA-binding domain protein [Escherichia coli MS 69-1] gi|300405112|gb|EFJ88650.1| cold-shock DNA-binding domain protein [Escherichia coli MS 84-1] gi|300409717|gb|EFJ93255.1| cold-shock DNA-binding domain protein [Escherichia coli MS 45-1] gi|300412087|gb|EFJ95397.1| cold-shock DNA-binding domain protein [Escherichia coli MS 115-1] gi|300418548|gb|EFK01859.1| cold-shock DNA-binding domain protein [Escherichia coli MS 182-1] gi|300450966|gb|EFK14586.1| cold-shock DNA-binding domain protein [Escherichia coli MS 116-1] gi|300457312|gb|EFK20805.1| cold-shock DNA-binding domain protein [Escherichia coli MS 21-1] gi|300462808|gb|EFK26301.1| cold-shock DNA-binding domain protein [Escherichia coli MS 187-1] gi|300523584|gb|EFK44653.1| cold-shock DNA-binding domain protein [Escherichia coli MS 119-7] gi|300528028|gb|EFK49090.1| cold-shock DNA-binding domain protein [Escherichia coli MS 107-1] gi|300842233|gb|EFK69993.1| cold-shock DNA-binding domain protein [Escherichia coli MS 124-1] gi|300846211|gb|EFK73971.1| cold-shock DNA-binding domain protein [Escherichia coli MS 78-1] gi|301075412|gb|EFK90218.1| cold-shock DNA-binding domain protein [Escherichia coli MS 146-1] gi|305853335|gb|EFM53774.1| Cold shock-like protein cspH [Escherichia coli NC101] gi|307552813|gb|ADN45588.1| cold shock-like protein H [Escherichia coli ABU 83972] gi|307627599|gb|ADN71903.1| Cold shock-like protein cspH [Escherichia coli UM146] gi|308121326|gb|EFO58588.1| cold-shock DNA-binding domain protein [Escherichia coli MS 145-7] gi|309701266|emb|CBJ00566.1| stress protein, member of the CspA-family [Escherichia coli ETEC H10407] gi|312286355|gb|EFR14268.1| cold shock-like protein cspG [Escherichia coli 2362-75] gi|312945494|gb|ADR26321.1| stress protein CspH [Escherichia coli O83:H1 str. NRG 857C] gi|313650760|gb|EFS15161.1| cold shock-like protein cspG [Shigella flexneri 2a str. 2457T] gi|315060273|gb|ADT74600.1| stress protein, member of the CspA-family [Escherichia coli W] gi|315135639|dbj|BAJ42798.1| cold shock-like protein cspH [Escherichia coli DH1] gi|315258036|gb|EFU38004.1| cold-shock DNA-binding domain protein [Escherichia coli MS 85-1] gi|315287612|gb|EFU47018.1| cold-shock DNA-binding domain protein [Escherichia coli MS 110-3] gi|315291157|gb|EFU50520.1| cold-shock DNA-binding domain protein [Escherichia coli MS 153-1] gi|315296283|gb|EFU55589.1| cold-shock DNA-binding domain protein [Escherichia coli MS 16-3] gi|320175184|gb|EFW50294.1| Cold shock protein CspH [Shigella dysenteriae CDC 74-1112] gi|320178569|gb|EFW53534.1| Cold shock protein CspH [Shigella boydii ATCC 9905] gi|320187199|gb|EFW61900.1| Cold shock protein CspH [Shigella flexneri CDC 796-83] gi|320192514|gb|EFW67156.1| Cold shock protein CspH [Escherichia coli O157:H7 str. EC1212] gi|320196523|gb|EFW71146.1| Cold shock protein CspH [Escherichia coli WV_060327] gi|320200217|gb|EFW74805.1| Cold shock protein CspH [Escherichia coli EC4100B] gi|320637856|gb|EFX07648.1| cold shock-like protein CspH [Escherichia coli O157:H7 str. G5101] gi|320642981|gb|EFX12182.1| cold shock-like protein CspH [Escherichia coli O157:H- str. 493-89] gi|320648438|gb|EFX17093.1| cold shock-like protein CspH [Escherichia coli O157:H- str. H 2687] gi|320653755|gb|EFX21829.1| cold shock-like protein CspH [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659597|gb|EFX27160.1| cold shock-like protein CspH [Escherichia coli O55:H7 str. USDA 5905] gi|320664368|gb|EFX31519.1| cold shock-like protein CspH [Escherichia coli O157:H7 str. LSU-61] gi|323157488|gb|EFZ43598.1| cold shock-like protein cspG [Escherichia coli EPECa14] gi|323174904|gb|EFZ60519.1| cold shock-like protein cspG [Escherichia coli LT-68] gi|323379167|gb|ADX51435.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323938093|gb|EGB34355.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1520] gi|323942903|gb|EGB39068.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323947222|gb|EGB43230.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323953316|gb|EGB49182.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H252] gi|323958281|gb|EGB53990.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H263] gi|323962874|gb|EGB58449.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H489] gi|323967236|gb|EGB62660.1| cold-shock DNA-binding domain-containing protein [Escherichia coli M863] gi|323973136|gb|EGB68328.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|324009921|gb|EGB79140.1| cold-shock DNA-binding domain protein [Escherichia coli MS 57-2] gi|324013377|gb|EGB82596.1| cold-shock DNA-binding domain protein [Escherichia coli MS 60-1] gi|324019121|gb|EGB88340.1| cold-shock DNA-binding domain protein [Escherichia coli MS 117-3] gi|324117148|gb|EGC11056.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E1167] gi|326338569|gb|EGD62396.1| Cold shock protein CspH [Escherichia coli O157:H7 str. 1125] gi|326347790|gb|EGD71506.1| Cold shock protein CspH [Escherichia coli O157:H7 str. 1044] gi|327253386|gb|EGE65024.1| cold shock-like protein cspG [Escherichia coli STEC_7v] gi|330910755|gb|EGH39265.1| cold shock protein CspH [Escherichia coli AA86] gi|331038318|gb|EGI10538.1| major cold shock protein Cspa1 [Escherichia coli H736] gi|331044995|gb|EGI17122.1| conserved domain protein [Escherichia coli M605] gi|331055297|gb|EGI27306.1| conserved domain protein [Escherichia coli TA206] gi|331060818|gb|EGI32782.1| major cold shock protein Cspa1 [Escherichia coli TA143] gi|331064965|gb|EGI36860.1| major cold shock protein Cspa1 [Escherichia coli TA271] gi|331070166|gb|EGI41532.1| major cold shock protein Cspa1 [Escherichia coli TA280] gi|331075468|gb|EGI46766.1| conserved domain protein [Escherichia coli H591] gi|331080125|gb|EGI51304.1| major cold shock protein Cspa1 [Escherichia coli H299] gi|332092463|gb|EGI97536.1| cold shock-like protein cspG [Shigella boydii 5216-82] gi|332093477|gb|EGI98535.1| cold shock-like protein cspG [Shigella boydii 3594-74] gi|332102181|gb|EGJ05527.1| predicted protein [Shigella sp. D9] gi|332342431|gb|AEE55765.1| cold shock-like protein CspG [Escherichia coli UMNK88] gi|332759842|gb|EGJ90143.1| cold shock-like protein cspG [Shigella flexneri 2747-71] gi|332762774|gb|EGJ93037.1| cold shock-like protein cspG [Shigella flexneri K-671] gi|333019957|gb|EGK39228.1| cold shock-like protein cspG [Shigella flexneri K-304] Length = 70 Score = 44.9 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G GFI P + +V +H SA L G V + V N G Sbjct: 6 TGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRDAEVLIPGLRVEFCRV-NGLRG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PTAANV 67 >gi|332704849|ref|ZP_08424937.1| Cold-shock protein, DNA-binding [Desulfovibrio africanus str. Walvis Bay] gi|332554998|gb|EGJ52042.1| Cold-shock protein, DNA-binding [Desulfovibrio africanus str. Walvis Bay] Length = 205 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI T G D++ HR+++ +A L G V Y+ + D A ++++ Sbjct: 132 YGFI----RTVDGQDIYFHRNSLLNANFDTLELGTGVAYEATEGDEG--LQASTVRVIEH 185 Query: 76 SSN 78 ++ Sbjct: 186 KTS 188 >gi|281345132|gb|EFB20716.1| hypothetical protein PANDA_000327 [Ailuropoda melanoleuca] Length = 168 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 57 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 107 >gi|50084245|ref|YP_045755.1| putative cold shock protein [Acinetobacter sp. ADP1] gi|49530221|emb|CAG67933.1| putative cold shock protein [Acinetobacter sp. ADP1] Length = 97 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 18/80 (22%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEG-----QLVTYDYV 57 ++G IK Y+ KG+GFI G E DVF H S L EG + V + V Sbjct: 6 YQGKIKQYDATKGFGFI---GGLE--QDVFFHISDFP------LEEGEPKRNERVKFMVV 54 Query: 58 QNDANGKYSAENLKLVPKSS 77 +N NGK+ A ++ V S Sbjct: 55 EN--NGKFKAVKIQRVVDQS 72 >gi|332884046|gb|EGK04326.1| hypothetical protein HMPREF9456_01354 [Dysgonomonas mossii DSM 22836] Length = 151 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 13/62 (20%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNL---TEGQLVTYDYVQND 60 G ++++N DKGYGFI GSTE F H S+ L EG +VT++ + Sbjct: 85 NGRVEYFNQDKGYGFIKHTGSTEK---YFFHVSS-------TLVPIEEGNMVTFELERGQ 134 Query: 61 AN 62 Sbjct: 135 KG 136 >gi|169797044|ref|YP_001714837.1| putative cold shock protein [Acinetobacter baumannii AYE] gi|213156550|ref|YP_002318211.1| putative cold shock protein [Acinetobacter baumannii AB0057] gi|215484505|ref|YP_002326740.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB307-0294] gi|301347614|ref|ZP_07228355.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB056] gi|301512491|ref|ZP_07237728.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB058] gi|301595899|ref|ZP_07240907.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB059] gi|332852133|ref|ZP_08433960.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii 6013150] gi|332867532|ref|ZP_08437685.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii 6013113] gi|169149971|emb|CAM87865.1| putative cold shock protein [Acinetobacter baumannii AYE] gi|213055710|gb|ACJ40612.1| putative cold shock protein [Acinetobacter baumannii AB0057] gi|213986360|gb|ACJ56659.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB307-0294] gi|332729505|gb|EGJ60844.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii 6013150] gi|332733949|gb|EGJ65094.1| cold-shock DNA-binding domain protein [Acinetobacter baumannii 6013113] Length = 97 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61 + G +K YN DKG+GFI+ D+F H S AS G + V + + D Sbjct: 6 YTGRVKQYNADKGFGFISTTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56 Query: 62 NGKYSAENLKLVPK 75 GK+ A ++ + Sbjct: 57 RGKFKAIKIERIDP 70 >gi|157960755|ref|YP_001500789.1| cold-shock DNA-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|157845755|gb|ABV86254.1| cold-shock DNA-binding domain protein [Shewanella pealeana ATCC 700345] Length = 205 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query: 2 VHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 V G I +N DKG+GFI PE + VFLH SA AS G+ V + + D Sbjct: 6 VSTGVIDSWNDDKGFGFIQIPEQKQQ----VFLHISAFASQSPR-PQSGKQVQFTLAK-D 59 Query: 61 ANGKYSAENLKLVPKSS 77 GK+ AE +L+ S Sbjct: 60 KQGKWRAEKAQLLSGGS 76 >gi|293404282|ref|ZP_06648276.1| cold shock-like protein cspH [Escherichia coli FVEC1412] gi|298380065|ref|ZP_06989670.1| cold shock-like protein cspH [Escherichia coli FVEC1302] gi|312971119|ref|ZP_07785298.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|291428868|gb|EFF01893.1| cold shock-like protein cspH [Escherichia coli FVEC1412] gi|298279763|gb|EFI21271.1| cold shock-like protein cspH [Escherichia coli FVEC1302] gi|310336880|gb|EFQ02047.1| cold shock-like protein cspG [Escherichia coli 1827-70] gi|323158183|gb|EFZ44277.1| cold shock-like protein cspG [Escherichia coli E128010] gi|323175878|gb|EFZ61472.1| cold shock-like protein cspG [Escherichia coli 1180] gi|323190645|gb|EFZ75915.1| cold shock-like protein cspG [Escherichia coli RN587/1] gi|332767783|gb|EGJ97974.1| cold shock protein CspG [Shigella flexneri 2930-71] Length = 66 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G GFI P + +V +H SA L G V + V N G Sbjct: 2 TGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRDAEVLIPGLRVEFCRV-NGLRG 57 Query: 64 KYSAEN 69 +A Sbjct: 58 PTAANV 63 >gi|152964323|ref|YP_001360107.1| cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] gi|151358840|gb|ABS01843.1| putative cold-shock DNA-binding domain protein [Kineococcus radiotolerans SRS30216] Length = 156 Score = 44.6 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G ++ ++ +G+GFIT E+ VF H V +L EG V + Q D Sbjct: 4 LAKGKVRSFDDGRGFGFITSPDCPEN---VFFHVKDVVDLEAEDL-EGASVQFTLDQGDR 59 Query: 62 NGKYSAENLKLV 73 Y A +++ + Sbjct: 60 G--YKATDVRPL 69 >gi|224367842|ref|YP_002602005.1| CspG [Desulfobacterium autotrophicum HRM2] gi|223690558|gb|ACN13841.1| CspG [Desulfobacterium autotrophicum HRM2] Length = 217 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ RG+I +N +KG+GFITP G +F H + + Q +TY D Sbjct: 1 MLRRGNITLWNDEKGFGFITP---NAGGKQLFFHIKSCSPHNRRPAI-NQSITYSLSV-D 55 Query: 61 ANGKYSAENLKLVPK 75 G+ A + ++P Sbjct: 56 KQGRPCAVKV-ILPD 69 >gi|218246175|ref|YP_002371546.1| cold-shock DNA-binding domain-containing protein [Cyanothece sp. PCC 8801] gi|218166653|gb|ACK65390.1| cold-shock DNA-binding domain protein [Cyanothece sp. PCC 8801] Length = 209 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 KW ++G+GFI P + +VFLH S V A E + Y V D++GK A Sbjct: 12 KW-KDERGFGFIQP---IDGSQEVFLHISEVKDASRR-PQENDTIYYHCVV-DSDGKVRA 65 Query: 68 EN 69 N Sbjct: 66 CN 67 >gi|260825712|ref|XP_002607810.1| hypothetical protein BRAFLDRAFT_259732 [Branchiostoma floridae] gi|229293159|gb|EEN63820.1| hypothetical protein BRAFLDRAFT_259732 [Branchiostoma floridae] Length = 687 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Query: 4 RGSIKWYNPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 RGS+ + KG +GFI E +F H S V G +L+ G V + V N + Sbjct: 550 RGSV---DTIKGQFGFINYEVGDN--KKLFFHLSEVH-DG-SDLSPGDKVEFVVVCNQKS 602 Query: 63 GKYSAENLKLV 73 GKYSA ++K V Sbjct: 603 GKYSACSVKKV 613 >gi|257059224|ref|YP_003137112.1| cold-shock DNA-binding domain protein [Cyanothece sp. PCC 8802] gi|256589390|gb|ACV00277.1| cold-shock DNA-binding domain protein [Cyanothece sp. PCC 8802] Length = 211 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Query: 8 KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 KW ++G+GFI P + +VFLH S V A E + Y V D++GK A Sbjct: 12 KW-KDERGFGFIQP---IDGSQEVFLHISEVKDASRR-PQENDTIYYHCVV-DSDGKVRA 65 Query: 68 EN 69 N Sbjct: 66 CN 67 >gi|160888974|ref|ZP_02069977.1| hypothetical protein BACUNI_01394 [Bacteroides uniformis ATCC 8492] gi|270293902|ref|ZP_06200104.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317479261|ref|ZP_07938396.1| cold-shock DNA-binding domain-containing protein [Bacteroides sp. 4_1_36] gi|156861441|gb|EDO54872.1| hypothetical protein BACUNI_01394 [Bacteroides uniformis ATCC 8492] gi|270275369|gb|EFA21229.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316904549|gb|EFV26368.1| cold-shock DNA-binding domain-containing protein [Bacteroides sp. 4_1_36] Length = 165 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + RG I+++N KG+GFI E F H + V + + E +VT+D + Sbjct: 85 IRRGRIEFFNESKGFGFIKDLSGVEK---YFFHINNVLTD----IAENNIVTFDLERGLK 137 Query: 62 NGKYSAENLKL 72 +A N+ L Sbjct: 138 G--MNAVNVAL 146 >gi|221115367|ref|XP_002163744.1| PREDICTED: similar to RNA-binding protein pippin [Hydra magnipapillata] Length = 147 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++ + +KG+GF+ P+ + VFLH S + + + G V + + Sbjct: 65 NGTVVSFCREKGHGFVKPDNEERN---VFLHISDIEDE--YVVQSGDRVEFRTIPMPPKC 119 Query: 64 -KYSAENLKLVP 74 + A ++L+ Sbjct: 120 VERMAVEVRLIE 131 >gi|145477311|ref|XP_001424678.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124391744|emb|CAK57280.1| unnamed protein product [Paramecium tetraurelia] Length = 328 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 12/78 (15%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQN 59 G++K+Y+ + YGFI + + G D+F+H + AG L +G ++ + ++ Sbjct: 247 GTLKFYDEARSYGFIIMD---QDGSDLFVHCDDLTKAGMTKDFLRTAKQGNIIRFSFLIL 303 Query: 60 DANGK----YSAENLKLV 73 + GK A +L+ + Sbjct: 304 EYFGKYNKSRKAVDLQFI 321 >gi|47224663|emb|CAG03647.1| unnamed protein product [Tetraodon nigroviridis] Length = 206 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Query: 5 GSIKWYNPDKGYGFIT---PEGSTESGD-DVFLHRS 36 G KW+N G+GFI+ EGS DVF+H+S Sbjct: 9 GFCKWFNVRMGFGFISMTHSEGSPVDPPLDVFVHQS 44 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 6/27 (22%), Positives = 13/27 (48%) Query: 36 SAVASAGLFNLTEGQLVTYDYVQNDAN 62 S + G +L EG+ V + + ++ Sbjct: 103 SKLVMEGFRSLKEGEQVEFTFKKSTKG 129 >gi|163788507|ref|ZP_02182953.1| cold shock protein [Flavobacteriales bacterium ALC-1] gi|159876827|gb|EDP70885.1| cold shock protein [Flavobacteriales bacterium ALC-1] Length = 151 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G + +Y+ KG+GFI + E F H S + + + E VT++ + Sbjct: 89 IRNGKVSFYDSSKGFGFIIDTETNEKH---FTHVSGI----IDEIMENDKVTFELEKGQR 141 Query: 62 NGKYSAENLK 71 +A +K Sbjct: 142 G--MNAVKVK 149 >gi|153870420|ref|ZP_01999827.1| Cold-shock protein, DNA-binding [Beggiatoa sp. PS] gi|152073121|gb|EDN70180.1| Cold-shock protein, DNA-binding [Beggiatoa sp. PS] Length = 194 Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY-VQNDANGKYSAENL 70 +KG+GFI PE G+DVF+H A EG ++ Y + GKY A N Sbjct: 21 DEKGFGFILPENC---GEDVFIHIRAFGKISRR-PKEGDIIYYHLKTTSSNKGKYRAYNA 76 Query: 71 KL 72 + Sbjct: 77 TI 78 >gi|299531202|ref|ZP_07044613.1| cold-shock DNA-binding domain protein [Comamonas testosteroni S44] gi|298720785|gb|EFI61731.1| cold-shock DNA-binding domain protein [Comamonas testosteroni S44] Length = 224 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 11/69 (15%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-----GQLVTYD 55 M + G++ +N ++G+G+I +G G+ +F+H SA E G + + Sbjct: 1 MRYSGTLTQWNDERGFGWIEADG---GGERLFVHISAFEP---RPPAEQRPRPGLRLEFS 54 Query: 56 YVQNDANGK 64 + Sbjct: 55 VGMEQGRKR 63 >gi|264676475|ref|YP_003276381.1| cold-shock DNA-binding domain protein [Comamonas testosteroni CNB-2] gi|262206987|gb|ACY31085.1| cold-shock DNA-binding domain protein [Comamonas testosteroni CNB-2] Length = 224 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 11/69 (15%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-----GQLVTYD 55 M + G++ +N ++G+G+I +G G+ +F+H SA E G + + Sbjct: 1 MRYSGTLTQWNDERGFGWIEADG---GGERLFVHISAFEP---RPPAEQRPQPGLRLEFS 54 Query: 56 YVQNDANGK 64 + Sbjct: 55 VGMEQGRKR 63 >gi|149370357|ref|ZP_01890046.1| cold shock protein [unidentified eubacterium SCB49] gi|149355908|gb|EDM44465.1| cold shock protein [unidentified eubacterium SCB49] Length = 153 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 15/71 (21%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDD---VFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G++ +Y+ KG+GFI G D F H S + + +TEG LV+++ + Sbjct: 93 GTVDFYDSSKGFGFII------DGKDKQKYFCHVSGL----IDEITEGNLVSFELEKGQR 142 Query: 62 NGKYSAENLKL 72 +A +KL Sbjct: 143 G--MNAVKVKL 151 >gi|313225295|emb|CBY06769.1| unnamed protein product [Oikopleura dioica] Length = 834 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 14/90 (15%) Query: 3 HRGSIKWYNPD-------------KG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTE 48 G+++ YN KG YGFI + +VF H + + + +L Sbjct: 649 KTGTVRAYNVQLKRKQQQSTIESIKGEYGFINYQEGEGDSKNVFFHATNLIEVSIADLGV 708 Query: 49 GQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 G +V + + N +G A ++LV K++ Sbjct: 709 GDIVKFSVIHNKRSGNTCAAGIRLVKKAAK 738 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%) Query: 5 GSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDAN 62 G++ K N YGFI + G +F H S VA+ G L V ++ + ++ N Sbjct: 55 GTVEKMMNS---YGFI--DVLDSRGR-IFFHFSQVANGGNNEQLRVADEVEFEMIMDERN 108 Query: 63 GKYSAENLKLVPKSS 77 G+ A + +P+ + Sbjct: 109 GRIVASKVVRLPRGT 123 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI E ++F H S VA+ + +L G V + + K A N+ L+P Sbjct: 221 FGFIKR---AEVAVEIFFHYSQVAAD-VPDLRVGNDVEFSI--ENRKDKEVAINVSLLPD 274 Query: 76 SS 77 S Sbjct: 275 GS 276 >gi|154494222|ref|ZP_02033542.1| hypothetical protein PARMER_03572 [Parabacteroides merdae ATCC 43184] gi|154086084|gb|EDN85129.1| hypothetical protein PARMER_03572 [Parabacteroides merdae ATCC 43184] Length = 152 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G + ++N KGYGFI GS G+ F H S + L +++E +VT++ + Sbjct: 88 KGRVDYFNESKGYGFIKDLGS---GEKYFFHVS---NNTLTDISETDIVTFELERGLRG- 140 Query: 64 KYSAENLKL 72 +A N+++ Sbjct: 141 -MNAINIRI 148 >gi|330467321|ref|YP_004405064.1| hypothetical protein VAB18032_16800 [Verrucosispora maris AB-18-032] gi|328810292|gb|AEB44464.1| hypothetical protein VAB18032_16800 [Verrucosispora maris AB-18-032] Length = 115 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G ++ Y+ D+G+G I +G+ G ++H SA+A G L GQ V++ +G Sbjct: 15 GVVRIYHGDEGWGVI--DGAEVPGG-CWVHFSAIAMNGYRQLAAGQGVSFIAEPMAQDG 70 >gi|167625421|ref|YP_001675715.1| cold-shock DNA-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167355443|gb|ABZ78056.1| putative cold-shock DNA-binding domain protein [Shewanella halifaxensis HAW-EB4] Length = 258 Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 10/79 (12%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGD------DVFLHRSAVASAGLFNLTEGQLVT 53 M+H+G ++W N KG+GFI E + + +VF+H SA+ L G + Sbjct: 1 MIHKGQLVRW-NDAKGFGFIRIEQAHDINQPANANHEVFIHVSALGLIPRRPLV-GDTLF 58 Query: 54 YDYVQNDANGKYSAENLKL 72 + + +GK A ++ Sbjct: 59 FQIL-TQKDGKQRAVEARI 76 >gi|224587820|gb|ACN58720.1| Cold shock domain-containing protein E1 [Salmo salar] Length = 196 Score = 44.2 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFIT E +F H V GL L G V + + N GK SA N++ V + Sbjct: 83 FGFITYEVG--ESKKLFFHVKEVH-DGLE-LQTGDEVEFSVILNQRTGKCSACNVRRVSE 138 >gi|331652013|ref|ZP_08353032.1| conserved domain protein [Escherichia coli M718] gi|331050291|gb|EGI22349.1| conserved domain protein [Escherichia coli M718] Length = 70 Score = 44.2 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G GFI P + +V +H SA L G V + V N G Sbjct: 6 TGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRYAEVLIPGLRVEFCRV-NGLRG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PTAANV 67 >gi|329956783|ref|ZP_08297352.1| cold-shock DNA-binding domain protein [Bacteroides clarus YIT 12056] gi|328523822|gb|EGF50909.1| cold-shock DNA-binding domain protein [Bacteroides clarus YIT 12056] Length = 146 Score = 44.2 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 9/69 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG ++++N +G+GFI E F H + V + + EG +VT+D + Sbjct: 85 RGRVEFFNEARGFGFIKDLAGIEK---YFFHVNNVVTE----VKEGNIVTFDLERGAKG- 136 Query: 64 KYSAENLKL 72 +A N+ L Sbjct: 137 -MNAVNINL 144 >gi|325267434|ref|ZP_08134090.1| hypothetical protein HMPREF9098_1818 [Kingella denitrificans ATCC 33394] gi|324981075|gb|EGC16731.1| hypothetical protein HMPREF9098_1818 [Kingella denitrificans ATCC 33394] Length = 1351 Score = 43.8 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 7/70 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-GLFNLTEGQLVTYDYVQNDAN 62 +G IK N +K +GF+T E SG D+F H++ ++S L +L+ G V++ + ++ Sbjct: 303 KGKIKTINYEKKFGFVTQE----SGVDLFFHQNNLSSKLKLDSLSTGDEVSF-VIGSNRQ 357 Query: 63 GKYSAENLKL 72 G A+++ L Sbjct: 358 G-ECADDITL 366 >gi|291514453|emb|CBK63663.1| cold-shock DNA-binding protein family [Alistipes shahii WAL 8301] Length = 148 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G ++++ KGYGFI +E F H + A AG+ EG VT++ + Sbjct: 87 GRVEYFTASKGYGFIKDAAGSEK---YFFHITN-APAGI---AEGDRVTFELERGTRG 137 >gi|197104106|ref|YP_002129483.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] gi|196477526|gb|ACG77054.1| cold-shock DNA-binding domain protein [Phenylobacterium zucineum HLK1] Length = 189 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 D+GYGF+ ++ G +++ HR+A+ + G +L G V + + A + L Sbjct: 129 DEGYGFLE----SDDGREIYFHRNALVNGGFEHLAVGDRVRFAESEGVKG--PQASTVHL 182 Query: 73 VPKSSN 78 V ++ Sbjct: 183 VKGAAQ 188 >gi|170727762|ref|YP_001761788.1| cold-shock DNA-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169813109|gb|ACA87693.1| cold-shock DNA-binding domain protein [Shewanella woodyi ATCC 51908] Length = 276 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Query: 4 RGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G+ ++W DKG+GFI E + DVF+H S ++ EG ++ + + ++ Sbjct: 7 KGTLVRW-KDDKGFGFIQAEPELD--RDVFIHASTLSHMSRR-PKEGDIIYFQL-ERKSD 61 Query: 63 GKYSAE 68 GK++A Sbjct: 62 GKFNAV 67 >gi|331701069|ref|YP_004398028.1| Cold-shock protein DNA-binding protein [Lactobacillus buchneri NRRL B-30929] gi|329128412|gb|AEB72965.1| Cold-shock protein DNA-binding protein [Lactobacillus buchneri NRRL B-30929] Length = 69 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G IK YNP +GFIT + + D+F ++A + G+ V Y V Sbjct: 1 MLKGKIKSYNPQNAFGFITQDSGED---DLFFFKNAFPEDQYGTIQVGKPVEY-VVVAGQ 56 Query: 62 NGKYSA 67 G +A Sbjct: 57 KGPQAA 62 >gi|114798604|ref|YP_760614.1| cold shock DNA-binding membrane protein [Hyphomonas neptunium ATCC 15444] gi|114738778|gb|ABI76903.1| cold shock DNA-binding membrane protein [Hyphomonas neptunium ATCC 15444] Length = 214 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 +N +G+GF+ + + G D F H A A ++ EG L +Y + D G+ A + Sbjct: 24 WNEARGFGFL---KAVDGGPDAFAHIRAFAKE-ERHIEEGHLYSYQ-TETDEAGRLRAAD 78 Query: 70 LKLV 73 ++ + Sbjct: 79 IRPI 82 >gi|167752758|ref|ZP_02424885.1| hypothetical protein ALIPUT_01019 [Alistipes putredinis DSM 17216] gi|167659827|gb|EDS03957.1| hypothetical protein ALIPUT_01019 [Alistipes putredinis DSM 17216] Length = 146 Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 7/59 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G ++++N +KGYGFI STE F H S+ A G+ EG++V ++ ++ Sbjct: 85 KGRVEYFNTEKGYGFIKDLASTEK---YFFHISS-APEGI---GEGRIVLFELMRGTRG 136 >gi|158293681|ref|XP_315026.4| AGAP004937-PA [Anopheles gambiae str. PEST] gi|157016564|gb|EAA10499.5| AGAP004937-PA [Anopheles gambiae str. PEST] Length = 959 Score = 43.8 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 7/66 (10%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV--QNDANGKYSA 67 + KG +GF+ + + G +F H S V G NL G V + V Q NGK SA Sbjct: 839 DSIKGQFGFL--DFEVDEGKKLFFHMSDVQ--GNVNLYLGDTVEFSIVTNQASRNGKTSA 894 Query: 68 ENLKLV 73 N+ + Sbjct: 895 CNVVKI 900 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S + L G V + + +GK A N+ +P Sbjct: 288 FGFIER---ADVVKEIFFHFS--EADNTIELRPGDDVEFIIQTRNVSGKEVACNIARLPP 342 Query: 76 SS 77 S Sbjct: 343 GS 344 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + +L G V ++ + GK A + + Sbjct: 123 YGFIQ---CCERQARLFFHFSQFGGN-IEHLKIGDPVEFEMTYDRRTGKPIASQVTKIAP 178 Query: 76 S 76 Sbjct: 179 E 179 >gi|145345223|ref|XP_001417116.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577343|gb|ABO95409.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 597 Score = 43.8 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI D+F H S + + GQ V++ GK A ++ PK Sbjct: 278 YGFI---KCCSRPKDLFFHFSELNED-VDAARTGQEVSFQVTTEPRTGKVVAAGVRFAPK 333 Query: 76 SS 77 S Sbjct: 334 GS 335 >gi|291453430|ref|ZP_06592820.1| cold-shock DNA-binding protein family [Streptomyces albus J1074] gi|291356379|gb|EFE83281.1| cold-shock DNA-binding protein family [Streptomyces albus J1074] Length = 147 Score = 43.8 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 +GYGFI P E G+DVF+H + + G+ V + + + G A ++LV Sbjct: 2 RGYGFIVP---NEGGEDVFMHANDLVDEKYL-YQSGREVEF-FEEMGEKGP-KASQIRLV 55 Query: 74 PKSS 77 +SS Sbjct: 56 YRSS 59 >gi|332520329|ref|ZP_08396791.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4] gi|332043682|gb|EGI79877.1| Cold-shock protein, DNA-binding [Lacinutrix algicola 5H-3-7-4] Length = 150 Score = 43.8 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 7/61 (11%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + +G + +Y+ KG+GFI TE + F H S + + +TE V ++ + Sbjct: 88 IRKGKVSFYDSSKGFGFII---DTEDQEKYFCHVSGL----IDEITENDKVQFELEKGMK 140 Query: 62 N 62 Sbjct: 141 G 141 >gi|146344254|ref|YP_001202110.1| cold shock domain-contain protein [Pseudomonas fluorescens SBW25] gi|146188066|emb|CAM96396.1| putative cold shock domain transmembrane protein [Pseudomonas fluorescens SBW25] Length = 282 Score = 43.8 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + + KGYGFI+ + G+ F+H+ V G LT GQ VT+ G Sbjct: 26 EGEVISFVASKGYGFISGD----DGERYFVHQKDVK--GGEPLTSGQRVTF-VPTPSPKG 78 Query: 64 KYSAENL 70 + L Sbjct: 79 SKARHVL 85 >gi|262376763|ref|ZP_06069991.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] gi|262308473|gb|EEY89608.1| cold shock domain-containing protein CspD [Acinetobacter lwoffii SH145] Length = 97 Score = 43.4 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQND 60 +++G IK Y+P KG+GFI G E DVF H S + G + V ++ V+N Sbjct: 5 LYQGKIKQYDPAKGFGFI---GCAEG--DVFFHISDFPVAEG--EPKRNERVKFNVVENG 57 Query: 61 ANGKYSAENLKLVPKSS 77 KY A ++ V +S Sbjct: 58 D--KYKAIKIERVEDNS 72 >gi|218263152|ref|ZP_03477371.1| hypothetical protein PRABACTJOHN_03052 [Parabacteroides johnsonii DSM 18315] gi|218222937|gb|EEC95587.1| hypothetical protein PRABACTJOHN_03052 [Parabacteroides johnsonii DSM 18315] Length = 154 Score = 43.4 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 8/75 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G + ++N KGYGFI GS G+ F H S + L +++E +VT++ + Sbjct: 88 KGRVDYFNESKGYGFIKDLGS---GEKYFFHVS---NNTLTDISETDIVTFELERGLRG- 140 Query: 64 KYSAENLKLVPKSSN 78 +A N++ +S N Sbjct: 141 -MNAINIRNESESPN 154 >gi|322802596|gb|EFZ22889.1| hypothetical protein SINV_03993 [Solenopsis invicta] Length = 331 Score = 43.4 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Query: 25 TESGDDVFLHRSAVA----SAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 ++ +DVF+H+SA+ + ++ +G++V +D V + G +A Sbjct: 1 NDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVIGE-KGHEAANV 48 >gi|115725199|ref|XP_788422.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 266 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 + +G+I + KG+GFI+ + + G +FLH S + + G V Y Sbjct: 53 LKKGTIAEFERSKGHGFISSD---DDGSRIFLHISDIEGE--YVPVAGDRVEY 100 >gi|73969434|ref|XP_538352.2| PREDICTED: similar to RNA-binding protein pippin [Canis familiaris] Length = 231 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41 +G K ++ +G+GFITPE +D+F+H S Sbjct: 148 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVSDPQGE 182 >gi|5817108|emb|CAB53670.1| hypothetical protein [Homo sapiens] Length = 171 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 58 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 108 >gi|153836304|ref|ZP_01988971.1| cold shock domain family protein [Vibrio parahaemolyticus AQ3810] gi|260364958|ref|ZP_05777529.1| cold shock domain protein [Vibrio parahaemolyticus K5030] gi|260365000|ref|ZP_05777571.1| cold shock domain protein [Vibrio parahaemolyticus K5030] gi|260879605|ref|ZP_05891960.1| cold shock domain protein [Vibrio parahaemolyticus AN-5034] gi|260879646|ref|ZP_05892001.1| cold shock domain protein [Vibrio parahaemolyticus AN-5034] gi|260894920|ref|ZP_05903416.1| cold shock domain protein [Vibrio parahaemolyticus Peru-466] gi|260898880|ref|ZP_05907321.1| cold shock domain protein [Vibrio parahaemolyticus Peru-466] gi|260901090|ref|ZP_05909485.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037] gi|149750579|gb|EDM61324.1| cold shock domain family protein [Vibrio parahaemolyticus AQ3810] gi|165994449|dbj|BAF99671.1| cold shock domain family protein [Vibrio parahaemolyticus] gi|308086046|gb|EFO35741.1| cold shock domain protein [Vibrio parahaemolyticus Peru-466] gi|308086625|gb|EFO36320.1| cold shock domain protein [Vibrio parahaemolyticus Peru-466] gi|308093209|gb|EFO42904.1| cold shock domain protein [Vibrio parahaemolyticus AN-5034] gi|308093406|gb|EFO43101.1| cold shock domain protein [Vibrio parahaemolyticus AN-5034] gi|308110750|gb|EFO48290.1| cold shock domain protein [Vibrio parahaemolyticus AQ4037] gi|308111670|gb|EFO49210.1| cold shock domain protein [Vibrio parahaemolyticus K5030] gi|308111707|gb|EFO49247.1| cold shock domain protein [Vibrio parahaemolyticus K5030] Length = 155 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 ++W + D+G+GFI E D+F+H S G G V + V N K S Sbjct: 6 VRWVD-DRGFGFINSEELD---GDIFVHVSKFKK-GYRRPQIGDQVEFQLVNNAP--KLS 58 Query: 67 AENLKLVPKSSN 78 A +L+ N Sbjct: 59 ASTAQLLGVEPN 70 >gi|322798696|gb|EFZ20294.1| hypothetical protein SINV_03090 [Solenopsis invicta] Length = 881 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF+ E + G +F H S V L G V + V N GK SA + Sbjct: 766 DAMKGPFGFLAYE--VDEGKKLFFHASEVQD--HVMLQPGDQVEFVLVTNQRTGKSSACS 821 Query: 70 LKLVPKSSN 78 + + + Sbjct: 822 VTRLSDAVQ 830 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S S L G V + +Q NGK A N+ +P Sbjct: 281 FGFIER---ADVVKEIFFHFSEAKSMK-EELRLGDDVEF-IIQT-RNGKEVACNITKLPP 334 Query: 76 SS 77 S Sbjct: 335 GS 336 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 131 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMTYDRRTGKPIASTVSKIAP 186 >gi|111223645|ref|YP_714439.1| hypothetical protein FRAAL4246 [Frankia alni ACN14a] gi|111151177|emb|CAJ62888.1| hypothetical protein FRAAL4246 [Frankia alni ACN14a] Length = 90 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 RG ++ Y+ ++G+G I ++H S + G +L G+ VT+ Sbjct: 13 RGVVRTYDAERGWGVIDAPEVPGG---CWVHYSMIEMDGYRDLVAGRQVTF 60 >gi|256846982|ref|ZP_05552428.1| cold shock domain-containing protein CspD [Lactobacillus coleohominis 101-4-CHN] gi|256715646|gb|EEU30621.1| cold shock domain-containing protein CspD [Lactobacillus coleohominis 101-4-CHN] Length = 77 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 ++ G++K Y P KG+GFI E +F+H + + + G V + V Sbjct: 11 LMIIGTVKSYEPTKGWGFINSPHDGE----IFMHTKGIEKSSRHLIQAGTKVGFVIVPGV 66 Query: 61 ANGKYSAENLKLV 73 + A ++K++ Sbjct: 67 KG--FQAAHVKVI 77 >gi|28898563|ref|NP_798168.1| hypothetical protein VP1789 [Vibrio parahaemolyticus RIMD 2210633] gi|28806781|dbj|BAC60052.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] Length = 164 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 ++W + D+G+GFI E D+F+H S G G V + V N K S Sbjct: 15 VRWVD-DRGFGFINSEELD---GDIFVHVSKFKK-GYRRPQIGDQVEFQLVNNAP--KLS 67 Query: 67 AENLKLVPKSSN 78 A +L+ N Sbjct: 68 ASTAQLLGVEPN 79 >gi|296275546|ref|ZP_06858053.1| hypothetical protein SauraMR_04340 [Staphylococcus aureus subsp. aureus MR1] gi|296277083|ref|ZP_06859590.1| hypothetical protein SauraMR_12081 [Staphylococcus aureus subsp. aureus MR1] Length = 18 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 9/18 (50%), Positives = 16/18 (88%) Query: 2 VHRGSIKWYNPDKGYGFI 19 ++ G++KW+N +KG+GFI Sbjct: 1 MNNGTVKWFNAEKGFGFI 18 >gi|188026432|ref|ZP_02962051.2| hypothetical protein PROSTU_04144 [Providencia stuartii ATCC 25827] gi|188019835|gb|EDU57875.1| hypothetical protein PROSTU_04144 [Providencia stuartii ATCC 25827] Length = 174 Score = 43.4 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 16 MAMNGTITTWF-EDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKNAAVTFEPTTN 68 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K++P+S Sbjct: 69 NKG--LSAYAVKVIPES 83 >gi|137044|sp|P29174|CSDE1_CAVPO RecName: Full=Cold shock domain-containing protein E1; AltName: Full=Protein UNR gi|49568|emb|CAA42715.1| unr [Cavia porcellus] Length = 114 Score = 43.4 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 1 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 51 >gi|262369348|ref|ZP_06062676.1| LOW QUALITY PROTEIN: cold shock protein [Acinetobacter johnsonii SH046] gi|262315416|gb|EEY96455.1| LOW QUALITY PROTEIN: cold shock protein [Acinetobacter johnsonii SH046] Length = 67 Score = 43.0 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M +G IK ++ +G+GFI EG + DVF H + + G+++ + V++ Sbjct: 1 MFLKGKIKSFSTPRGFGFIEVEGDID---DVFFHIKDLPQNNIE-PKIGEVLQFMIVEDQ 56 Query: 61 ANGKYSAENLKLV 73 GK+ A N++ + Sbjct: 57 --GKFKAGNIQRL 67 >gi|149046919|gb|EDL99667.1| rCG58531, isoform CRA_a [Rattus norvegicus] Length = 99 Score = 43.0 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Query: 4 RGSIKWYNPDKGYGF---ITPEGSTESGD-DVFLHR 35 G KW+N G+GF I+ EG+ DVF+H+ Sbjct: 54 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQ 89 >gi|313203399|ref|YP_004042056.1| cold-shock DNA-binding protein family [Paludibacter propionicigenes WB4] gi|312442715|gb|ADQ79071.1| cold-shock DNA-binding protein family [Paludibacter propionicigenes WB4] Length = 149 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 9/60 (15%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHR-SAVASAGLFNLTEGQLVTYDYVQNDAN 62 G + +Y+ KG+GFI G+ E F+H S + + + EG LV ++ Q Sbjct: 88 NGRVDFYDDSKGFGFIKETGTQEK---FFVHVNSCLQA-----IKEGDLVDFELEQGKKG 139 >gi|319794317|ref|YP_004155957.1| colD-shock DNA-binding domain protein [Variovorax paradoxus EPS] gi|315596780|gb|ADU37846.1| cold-shock DNA-binding domain protein [Variovorax paradoxus EPS] Length = 223 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 9/80 (11%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-GQLVTYDYVQ 58 M +G ++W D+G+GFI S E DVF+H+ + L + G ++++ + Sbjct: 1 MKRQGRLVRW-EADRGFGFI---RSPEISADVFVHQRDF--SDRRVLPQVGMALSFEEIH 54 Query: 59 NDANGKYSAENLKLVPKSSN 78 G A ++ + +++ Sbjct: 55 VGGKGPR-AVAVQAISANAS 73 >gi|313226675|emb|CBY21820.1| unnamed protein product [Oikopleura dioica] Length = 277 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLH-RSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G IK++N ++ +GFI +G+ ++++ + V + +L G+ V ++ V+ G Sbjct: 157 GKIKFFNHERDFGFIIEDGNQAE---IYMNKINIVQIGKILSLRTGERVEFN-VKRGHQG 212 Query: 64 KYSAENLK 71 + A + Sbjct: 213 RLEAVQIT 220 >gi|288575353|ref|ZP_05976785.2| cold-shock domain protein [Neisseria mucosa ATCC 25996] gi|288567902|gb|EFC89462.1| cold-shock domain protein [Neisseria mucosa ATCC 25996] Length = 429 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE--GQLVTYDYVQNDAN 62 G+I ++ KGYGFI + ++F H SA GQ V++ + Sbjct: 215 GTITTWDDAKGYGFI---RFGDESQNIFFHISAYH---YNTCRPQTGQRVSFYCNRPIEG 268 Query: 63 GKYSAENLKLVPKSS 77 + A + + S Sbjct: 269 NRQQAIKVVRLGDES 283 >gi|198438072|ref|XP_002131596.1| PREDICTED: similar to LOC495181 protein [Ciona intestinalis] Length = 163 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDD-VFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 VH+G ++++ +G+GFI P + DD +F+H S + L G +++Y ++ Sbjct: 74 VHQGVCQFFSCSQGHGFIKPTDGS--SDDLIFMHISDIEGD-YVPLY-GDILSYKLTRSP 129 Query: 61 AN-GKYSAENLKLV 73 K+ A +++V Sbjct: 130 PKMEKFQAVEVRIV 143 >gi|326801235|ref|YP_004319054.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21] gi|326551999|gb|ADZ80384.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21] Length = 282 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 15/67 (22%) Query: 2 VHRGSIKWYNPDKGYGFIT-PEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDY 56 + G++KW++ KG+G I PE + +F+H G + + G +V + Sbjct: 1 MFIGAVKWFDNQKGFGIIALPEEES-----LFVHIR-----GFSSTPLAIDSGDVVIGEK 50 Query: 57 VQNDANG 63 + G Sbjct: 51 KPDKKKG 57 >gi|302846704|ref|XP_002954888.1| hypothetical protein VOLCADRAFT_95711 [Volvox carteri f. nagariensis] gi|300259863|gb|EFJ44087.1| hypothetical protein VOLCADRAFT_95711 [Volvox carteri f. nagariensis] Length = 455 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 +GFI DVF H S++ L +EG VT+ +++ GK A ++L P Sbjct: 19 FGFIACPHRVH---DVFFHESSLEDCSLEQFSEGTAVTF-ILEHVNGGKPVATRVRLAP 73 >gi|255065802|ref|ZP_05317657.1| putative cold shock DNA-binding membrane protein [Neisseria sicca ATCC 29256] gi|255050120|gb|EET45584.1| putative cold shock DNA-binding membrane protein [Neisseria sicca ATCC 29256] Length = 429 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE--GQLVTYDYVQNDAN 62 G+I ++ KGYGFI + ++F H SA GQ V++ + Sbjct: 215 GTITTWDDAKGYGFI---RFGDESQNIFFHISAYH---YNTCRPQTGQRVSFYCNRPIEG 268 Query: 63 GKYSAENLKLVPKSS 77 + A + + + Sbjct: 269 NRQQAVKVVRLGDEA 283 >gi|224369352|ref|YP_002603516.1| putative cold shock domain family protein [Desulfobacterium autotrophicum HRM2] gi|223692069|gb|ACN15352.1| putative cold shock domain family protein [Desulfobacterium autotrophicum HRM2] Length = 174 Score = 43.0 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 7/73 (9%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W N ++G+GFI S D+F+H S + ++ +D+V + Sbjct: 1 MKQKGKLVRW-NENRGFGFI---KSPAIKGDLFIHISELKKMSRR-PKVNDIIYFDHVTD 55 Query: 60 DANGKYSAENLKL 72 D GK A N ++ Sbjct: 56 DT-GKKKAINARI 67 >gi|291190250|ref|NP_001167093.1| Cold shock domain-containing protein E1 [Salmo salar] gi|223648082|gb|ACN10799.1| Cold shock domain-containing protein E1 [Salmo salar] Length = 854 Score = 43.0 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFIT E +F H V GL L G V + + N GK SA N++ V + Sbjct: 741 FGFITYEVG--ESKKLFFHVKEVH-DGLE-LQTGDEVEFSVILNQRTGKCSACNVRRVSE 796 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L L G V ++ + GK A L + Sbjct: 73 YGFIQ---CSERQARLFFHCSQYNGN-LQELKIGDDVEFEVSSDRRTGKPIAVKLLKIKP 128 Query: 76 S 76 Sbjct: 129 E 129 >gi|160883548|ref|ZP_02064551.1| hypothetical protein BACOVA_01520 [Bacteroides ovatus ATCC 8483] gi|156110961|gb|EDO12706.1| hypothetical protein BACOVA_01520 [Bacteroides ovatus ATCC 8483] Length = 180 Score = 43.0 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 9/75 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG ++++N +G+GFI E F H + V + E +VT+D + Sbjct: 106 RGRVEFFNESRGFGFIKDLSGVEK---YFFHVNNVIGN----IAENNIVTFDLERGVKG- 157 Query: 64 KYSAENLKLVPKSSN 78 +A N+ L KS++ Sbjct: 158 -MNAINISLENKSTS 171 >gi|298385204|ref|ZP_06994763.1| cold shock protein [Bacteroides sp. 1_1_14] gi|298262348|gb|EFI05213.1| cold shock protein [Bacteroides sp. 1_1_14] Length = 112 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG ++++N +G+GFI + F H + V ++EG +VT+D + Sbjct: 46 RGRVEFFNEARGFGFIKDLAGVDK---YFFHVNNVVGN----ISEGNIVTFDLERGVKG- 97 Query: 64 KYSAENL 70 +A N+ Sbjct: 98 -MNAVNI 103 >gi|221069417|ref|ZP_03545522.1| cold-shock DNA-binding domain protein [Comamonas testosteroni KF-1] gi|220714440|gb|EED69808.1| cold-shock DNA-binding domain protein [Comamonas testosteroni KF-1] Length = 224 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 11/69 (15%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE-----GQLVTYD 55 M + G++ +N ++G+G+I +G G+ +F+H SA E G + + Sbjct: 1 MRYSGTLTQWNDERGFGWIEADG---GGERLFVHISAFEP---RPPAEQRPQPGLRLEFA 54 Query: 56 YVQNDANGK 64 + Sbjct: 55 VGMEQGRKR 63 >gi|62179824|ref|YP_216241.1| cold shock protein-like protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224584247|ref|YP_002638045.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62127457|gb|AAX65160.1| cold shock protein-like protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468774|gb|ACN46604.1| putative cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714290|gb|EFZ05861.1| cold shock protein-like protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 70 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G G ITP ++ DV +H S+ L G V + + N G Sbjct: 6 TGIVKTFDCKSGKGLITP---SDGRKDVQVHISSCRQHETEALIPGIRVEFCRI-NGLRG 61 Query: 64 KYSAEN 69 A Sbjct: 62 PTDANV 67 >gi|298369567|ref|ZP_06980884.1| cold-shock DNA-binding domain family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282124|gb|EFI23612.1| cold-shock DNA-binding domain family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 364 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +GSI ++ +KGYGFI T + +F H SA GQ V++ + G Sbjct: 202 KGSIISWDDEKGYGFINYGSKTHN---IFFHISAFHYTNRR-PKTGQAVSFYCHPANGCG 257 Query: 64 KYSAENLKL 72 K A + L Sbjct: 258 KQKAARVVL 266 >gi|160900686|ref|YP_001566268.1| cold-shock DNA-binding domain-containing protein [Delftia acidovorans SPH-1] gi|160366270|gb|ABX37883.1| cold-shock DNA-binding domain protein [Delftia acidovorans SPH-1] Length = 219 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37 M +G + + ++G+GFI P+G G VF+H + Sbjct: 1 MRQQGRLTGWKDEQGFGFIEPDG---GGAQVFVHIKS 34 >gi|332859904|ref|XP_003317312.1| PREDICTED: cold shock domain-containing protein C2-like [Pan troglodytes] Length = 168 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36 +G K ++ +G+GFITPE +D+F+H S Sbjct: 70 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVS 99 >gi|332231339|ref|XP_003264854.1| PREDICTED: cold shock domain-containing protein C2-like [Nomascus leucogenys] Length = 168 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36 +G K ++ +G+GFITPE +D+F+H S Sbjct: 70 KGVCKQFSRSQGHGFITPE---NGSEDIFVHVS 99 >gi|218132095|ref|ZP_03460899.1| hypothetical protein BACEGG_03722 [Bacteroides eggerthii DSM 20697] gi|317477121|ref|ZP_07936362.1| cold-shock' DNA-binding domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|217985745|gb|EEC52086.1| hypothetical protein BACEGG_03722 [Bacteroides eggerthii DSM 20697] gi|316906664|gb|EFV28377.1| cold-shock' DNA-binding domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 147 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 9/67 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG ++++N +G+GFI E F H + V + + EG +VT+D + Sbjct: 85 RGRVEFFNESRGFGFIKDLSGVEK---YFFHVNNVVTE----IKEGNVVTFDLERGIKG- 136 Query: 64 KYSAENL 70 +A N+ Sbjct: 137 -MNAVNI 142 >gi|73981088|ref|XP_856836.1| PREDICTED: similar to Cold shock domain protein E1 (UNR protein) (N-ras upstream gene protein) isoform 14 [Canis familiaris] Length = 763 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 650 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 700 Score = 41.9 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 +GFI ++F H S L L G V + D NGK A + +P Sbjct: 197 FGFIERGDIV---KEIFFHYSEFKGD-LETLQPGDDVEFTI--KDRNGKEVATDNDPLP 249 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKP 92 Query: 76 S 76 Sbjct: 93 E 93 >gi|188991346|ref|YP_001903356.1| hypothetical protein xccb100_1951 [Xanthomonas campestris pv. campestris str. B100] gi|167733106|emb|CAP51304.1| Putative membrane protein [Xanthomonas campestris pv. campestris] Length = 204 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + ++ KG+GF+ P G G+ F+H A G ++TY VQ D Sbjct: 1 MRYQGRLSDWDDHKGFGFVVPHG---GGERAFVHIGAFGPQRRRPCN-GDVLTY-AVQRD 55 Query: 61 ANGKYSAENLKLVPKSSN 78 A+ + A ++ +S+ Sbjct: 56 AHARLKATQVRWADRSTQ 73 >gi|239501279|ref|ZP_04660589.1| 'Cold-shock' DNA-binding domain protein [Acinetobacter baumannii AB900] gi|260555664|ref|ZP_05827884.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] gi|260410575|gb|EEX03873.1| cold shock domain-containing protein CspD [Acinetobacter baumannii ATCC 19606] Length = 97 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61 + G IK YN DKG+GFI+ D+F H S AS G + V + + D Sbjct: 6 YTGRIKQYNADKGFGFISTTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56 Query: 62 NGKYSAENLKLVPK 75 GK+ A ++ + Sbjct: 57 RGKFKAIKIERIDP 70 >gi|29347294|ref|NP_810797.1| cold shock protein [Bacteroides thetaiotaomicron VPI-5482] gi|253572828|ref|ZP_04850227.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29339193|gb|AAO76991.1| cold shock protein, putative DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|251837560|gb|EES65652.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 152 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG ++++N +G+GFI + F H + V ++EG +VT+D + Sbjct: 86 RGRVEFFNEARGFGFIKDLAGVDK---YFFHVNNVVGN----ISEGNIVTFDLERGVKG- 137 Query: 64 KYSAENL 70 +A N+ Sbjct: 138 -MNAVNI 143 >gi|255013951|ref|ZP_05286077.1| cold shock protein, putative DNA-binding protein [Bacteroides sp. 2_1_7] gi|262382000|ref|ZP_06075138.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298375436|ref|ZP_06985393.1| cold shock protein [Bacteroides sp. 3_1_19] gi|301310539|ref|ZP_07216478.1| cold shock protein [Bacteroides sp. 20_3] gi|262297177|gb|EEY85107.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298267936|gb|EFI09592.1| cold shock protein [Bacteroides sp. 3_1_19] gi|300832113|gb|EFK62744.1| cold shock protein [Bacteroides sp. 20_3] Length = 148 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG + ++N KG+GFI TE F H + V ++ +VT+D + D Sbjct: 86 RGRVDYFNEAKGFGFIRDLSGTEK---YFFHVNNVVDD----ISVNDIVTFDLERGDRG- 137 Query: 64 KYSAENL 70 SA N+ Sbjct: 138 -LSAVNV 143 >gi|150007460|ref|YP_001302203.1| cold shock DNA-binding protein [Parabacteroides distasonis ATCC 8503] gi|256839709|ref|ZP_05545218.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|149935884|gb|ABR42581.1| cold shock protein, putative DNA-binding protein [Parabacteroides distasonis ATCC 8503] gi|256738639|gb|EEU51964.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 148 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG + ++N KG+GFI TE F H + V ++ +VT+D + D Sbjct: 86 RGRVDYFNEAKGFGFIRDLSGTEK---YFFHVNNVVDD----ISVNDIVTFDLERGDRG- 137 Query: 64 KYSAENL 70 SA N+ Sbjct: 138 -LSAVNV 143 >gi|323456552|gb|EGB12419.1| hypothetical protein AURANDRAFT_61106 [Aureococcus anophagefferens] Length = 943 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 11/67 (16%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE--GQLVTYDYVQNDANGK 64 +K +GYG I P+ +E +F+H SA+ + G +L+ G ++YD K Sbjct: 633 VK----TRGYGLIAPDHGSEK---IFVHASALKAFGTKDLSSFVGTRMSYD--TGTRQNK 683 Query: 65 YSAENLK 71 A +++ Sbjct: 684 PIALDVR 690 >gi|170693562|ref|ZP_02884721.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] gi|170141717|gb|EDT09886.1| cold-shock DNA-binding domain protein [Burkholderia graminis C4D1M] Length = 33 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%) Query: 40 SAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 G L EGQ VT++ VQ A N++ Sbjct: 1 MNGFKTLKEGQKVTFEVVQGPKG--KQASNIQ 30 >gi|309790908|ref|ZP_07685450.1| hypothetical protein OSCT_1401 [Oscillochloris trichoides DG6] gi|308227022|gb|EFO80708.1| hypothetical protein OSCT_1401 [Oscillochloris trichoides DG6] Length = 190 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRS 36 G I + D+GYGFITP+ G DVFLH S Sbjct: 6 GKITMWKEDRGYGFITPDH---GGPDVFLHAS 34 >gi|74204494|dbj|BAE43235.1| unnamed protein product [Mus musculus] gi|148673098|gb|EDL05045.1| lin-28 homolog B (C. elegans), isoform CRA_c [Mus musculus] Length = 96 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Query: 4 RGSIKWYNPDKGYGF---ITPEGSTESGD-DVFLHR 35 G KW+N G+GF I+ EG+ DVF+H+ Sbjct: 54 TGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQ 89 >gi|4884156|emb|CAB43294.1| hypothetical protein [Homo sapiens] Length = 369 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 256 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 306 >gi|93005230|ref|YP_579667.1| cold-shock DNA-binding domain-containing protein [Psychrobacter cryohalolentis K5] gi|92392908|gb|ABE74183.1| cold-shock DNA-binding domain protein [Psychrobacter cryohalolentis K5] Length = 223 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 9/70 (12%) Query: 3 HRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 +G + KW DKG+GFI TE+G+ VF H SA + G+ V + ++ Sbjct: 9 QQGRVTKW-QDDKGFGFIE----TEAGESVFFHVSAFKAQ--RRPVIGEEVVFIVGYDNQ 61 Query: 62 NGKYSAENLK 71 + A+ ++ Sbjct: 62 R-RLQAKEVQ 70 >gi|262376761|ref|ZP_06069989.1| cold shock/excaliber domain-containing protein CspD [Acinetobacter lwoffii SH145] gi|262308471|gb|EEY89606.1| cold shock/excaliber domain-containing protein CspD [Acinetobacter lwoffii SH145] Length = 240 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G IK YN D+G+GFI EG + D+F H + + G+ + + V++ Sbjct: 1 MFQEGKIKTYNEDRGFGFIQIEGQS---KDLFFHVKDFPNKNVP-PRIGEKLKFLIVED- 55 Query: 61 ANGKYSAENL 70 NGK+ A+++ Sbjct: 56 -NGKFKADHI 64 >gi|73981083|ref|XP_856712.1| PREDICTED: similar to Cold shock domain protein E1 (UNR protein) (N-ras upstream gene protein) isoform 12 [Canis familiaris] Length = 449 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 336 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 386 >gi|218248953|ref|YP_002374324.1| hypothetical protein PCC8801_4244 [Cyanothece sp. PCC 8801] gi|257062039|ref|YP_003139927.1| hypothetical protein Cyan8802_4306 [Cyanothece sp. PCC 8802] gi|218169431|gb|ACK68168.1| protein of unknown function DUF88 [Cyanothece sp. PCC 8801] gi|256592205|gb|ACV03092.1| protein of unknown function DUF88 [Cyanothece sp. PCC 8802] Length = 299 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 15/75 (20%) Query: 8 KWYNPDK---------GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 K ++ +K GYGFI + +F H + + +L +G V + Sbjct: 228 KTFSSEKSEIISLQPGGYGFIKYPPNN-----LFFHFTDLVDVDFNDLEKGMKVEFSRGT 282 Query: 59 NDANGKYSAENLKLV 73 ND G+ A+N+K + Sbjct: 283 ND-RGETVAKNVKPL 296 >gi|6014735|sp|P81622|CSPS_STRTR RecName: Full=Cold shock protein CspSt Length = 21 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 16/21 (76%) Query: 3 HRGSIKWYNPDKGYGFITPEG 23 G++KW+N +KG+GFIT E Sbjct: 1 KNGTVKWFNAEKGFGFITSED 21 >gi|242007282|ref|XP_002424470.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507888|gb|EEB11732.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 994 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF++ + E G ++F + V + L G V ++ V N NGK SA N Sbjct: 878 DAVKGHFGFLS--YAVEDGKNLFFRMTEVKDGAM--LQPGDTVEFNLVTNHRNGKTSACN 933 Query: 70 LKLVPK 75 + V K Sbjct: 934 VTKVSK 939 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK-YSAENLKLV 73 G+GFI + VF H S L Q V Y+ +G SAEN+KL+ Sbjct: 704 GFGFIETISHDQE---VFFHFSNFDGDPEK-LELCQEVMYNLGSRSTSGSCMSAENVKLL 759 Query: 74 PKSS 77 PK + Sbjct: 760 PKGT 763 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 179 YGFIQ---CCERQARLFFHFSQFSGN-IEHLKIGDPVEFEMSYDRRTGKPIASAVSKIAP 234 Query: 76 S 76 Sbjct: 235 E 235 >gi|237722793|ref|ZP_04553274.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|260175082|ref|ZP_05761494.1| cold shock protein, putative DNA-binding protein [Bacteroides sp. D2] gi|293371814|ref|ZP_06618224.1| cold-shock DNA-binding domain protein [Bacteroides ovatus SD CMC 3f] gi|299147644|ref|ZP_07040708.1| cold shock protein [Bacteroides sp. 3_1_23] gi|315923310|ref|ZP_07919550.1| conserved hypothetical protein [Bacteroides sp. D2] gi|229447315|gb|EEO53106.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292633266|gb|EFF51837.1| cold-shock DNA-binding domain protein [Bacteroides ovatus SD CMC 3f] gi|298514431|gb|EFI38316.1| cold shock protein [Bacteroides sp. 3_1_23] gi|313697185|gb|EFS34020.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 161 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 9/75 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG ++++N +G+GFI E F H + V + E +VT+D + Sbjct: 87 RGRVEFFNESRGFGFIKDLSGVEK---YFFHVNNVIGN----IAENNIVTFDLERGVKG- 138 Query: 64 KYSAENLKLVPKSSN 78 +A N+ L KS++ Sbjct: 139 -MNAINISLENKSTS 152 >gi|321479102|gb|EFX90058.1| hypothetical protein DAPPUDRAFT_309815 [Daphnia pulex] Length = 947 Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG +GF+ E E G +F H S V L V + + N GK SA N Sbjct: 820 DAIKGQFGFLNYE--MEDGKKLFFHLSEVKDN--ATLLPNDTVEFVLITNQRTGKSSACN 875 Query: 70 L 70 + Sbjct: 876 I 876 Score = 41.5 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + +L G V ++ + NGK A ++ + Sbjct: 154 YGFIQ---CCERQARLFFHFSQFDGN-IEHLKIGDPVEFEVTYDRRNGKPIASSVSKIAP 209 Query: 76 S 76 Sbjct: 210 E 210 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV-QNDANGKYSAENLKLVP 74 +GFI ++F H S +L G V Y + ++GK SAEN+KL+ Sbjct: 667 FGFIENLSHD---KEIFFHYSHFDGDA-DSLDLGHEVQYTLTGKTPSSGKISAENVKLLK 722 Query: 75 KSS 77 K + Sbjct: 723 KGT 725 >gi|21231668|ref|NP_637585.1| integral membrane protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768209|ref|YP_242971.1| integral membrane protein [Xanthomonas campestris pv. campestris str. 8004] gi|21113365|gb|AAM41509.1| integral membrane protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573541|gb|AAY48951.1| integral membrane protein [Xanthomonas campestris pv. campestris str. 8004] Length = 204 Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G + ++ KG+GF+ P G G+ F+H A G ++TY VQ D Sbjct: 1 MRYQGRLSDWDDHKGFGFVVPHG---GGERAFVHIGAFGPQRRRPCN-GDVLTY-AVQRD 55 Query: 61 ANGKYSAENLKLVPKSSN 78 A+ + A ++ +S+ Sbjct: 56 AHARLKATQVRWADRSTQ 73 >gi|18204965|gb|AAH21692.1| CSDE1 protein [Homo sapiens] Length = 272 Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 159 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 209 >gi|262280132|ref|ZP_06057917.1| cold-shock DNA-binding domain-containing protein [Acinetobacter calcoaceticus RUH2202] gi|262260483|gb|EEY79216.1| cold-shock DNA-binding domain-containing protein [Acinetobacter calcoaceticus RUH2202] Length = 97 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 10/74 (13%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61 + G +K Y+P+KG+GFI G+ E D+F H S AS G + V + V N Sbjct: 6 YTGKVKQYDPEKGFGFI---GTAEG--DIFFHISDFPASEG--EPKRNEKVKFLAVDNQ- 57 Query: 62 NGKYSAENLKLVPK 75 GK+ A ++ + Sbjct: 58 -GKFKAIKIERIDP 70 >gi|295085350|emb|CBK66873.1| cold-shock DNA-binding protein family [Bacteroides xylanisolvens XB1A] Length = 161 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 9/69 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG ++++N +G+GFI E F H + V + E +VT+D + Sbjct: 87 RGRVEFFNESRGFGFIKDLSGVEK---YFFHVNNVVGN----IAENNIVTFDLERGVKG- 138 Query: 64 KYSAENLKL 72 +A N+ L Sbjct: 139 -MNAVNISL 146 >gi|256786238|ref|ZP_05524669.1| cold shock protein [Streptomyces lividans TK24] Length = 33 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%) Query: 40 SAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 G L EGQ V ++ Q A+ ++L Sbjct: 1 MDGYRTLEEGQRVEFEISQGQKG--PQADMVRL 31 >gi|189465919|ref|ZP_03014704.1| hypothetical protein BACINT_02282 [Bacteroides intestinalis DSM 17393] gi|189434183|gb|EDV03168.1| hypothetical protein BACINT_02282 [Bacteroides intestinalis DSM 17393] Length = 149 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 9/64 (14%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 +N +GYGFI GS G+ F H ++ A G+ TEG VT++ + +A Sbjct: 93 FNVSRGYGFIKDLGS---GEKYFFHITS-APEGI---TEGDNVTFEIERGTRG--MNAVR 143 Query: 70 LKLV 73 + ++ Sbjct: 144 ISII 147 >gi|145490580|ref|XP_001431290.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398394|emb|CAK63892.1| unnamed protein product [Paramecium tetraurelia] Length = 328 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 12/78 (15%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQN 59 G++K+Y+ + YGFI + G D+F+H + AG L G ++ + ++ Sbjct: 247 GTLKFYDEARSYGFIIMDM---DGSDLFVHCDDLTKAGMTKDFLRTAKHGNIIRFSFLIL 303 Query: 60 DANGK----YSAENLKLV 73 + GK A +L+ + Sbjct: 304 EYFGKYNKSRKAVDLQFI 321 >gi|145486210|ref|XP_001429112.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124396202|emb|CAK61714.1| unnamed protein product [Paramecium tetraurelia] Length = 330 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 12/78 (15%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQN 59 G++K+Y+ + YGFI + G D+F+H + AG L G ++ + ++ Sbjct: 249 GTLKFYDEARSYGFIIMDM---DGSDLFVHCDDLTKAGMTKDFLRTAKHGNIIRFSFLIL 305 Query: 60 DANGK----YSAENLKLV 73 + GK A +L+ + Sbjct: 306 EYFGKYNKSRKAVDLQFI 323 >gi|227330242|ref|ZP_03834266.1| hypothetical protein PcarcW_24001 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 36 Score = 42.2 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 10/15 (66%), Positives = 13/15 (86%) Query: 7 IKWYNPDKGYGFITP 21 +KW+N KG+GFITP Sbjct: 1 VKWFNESKGFGFITP 15 >gi|300694070|ref|YP_003750043.1| cold shock activator transcription regulator protein [Ralstonia solanacearum PSI07] gi|299076107|emb|CBJ35418.1| putative cold shock activator transcription regulator protein [Ralstonia solanacearum PSI07] Length = 68 Score = 42.2 bits (99), Expect = 0.025, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 F+ S + +GL EGQ V++D V +G+ A N+K + Sbjct: 28 FIRDSEIQLSGLQRFYEGQRVSFDVVMG-PDGELIAVNIKPI 68 >gi|299771405|ref|YP_003733431.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1] gi|298701493|gb|ADI92058.1| Cold-shock DNA-binding domain protein [Acinetobacter sp. DR1] Length = 97 Score = 42.2 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61 + G +K Y+PDKG+GFI+ D+F H S AS G + V + + D Sbjct: 6 YTGKVKQYDPDKGFGFISTTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56 Query: 62 NGKYSAENLKLVPK 75 GK+ A ++ + Sbjct: 57 QGKFKAIKIERIDP 70 >gi|237713857|ref|ZP_04544338.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409234|ref|ZP_06085778.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645799|ref|ZP_06723483.1| cold-shock DNA-binding domain protein [Bacteroides ovatus SD CC 2a] gi|294809472|ref|ZP_06768176.1| cold-shock DNA-binding domain protein [Bacteroides xylanisolvens SD CC 1b] gi|298482321|ref|ZP_07000508.1| cold shock protein [Bacteroides sp. D22] gi|229446013|gb|EEO51804.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352981|gb|EEZ02077.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638878|gb|EFF57212.1| cold-shock DNA-binding domain protein [Bacteroides ovatus SD CC 2a] gi|294443344|gb|EFG12107.1| cold-shock DNA-binding domain protein [Bacteroides xylanisolvens SD CC 1b] gi|298271608|gb|EFI13182.1| cold shock protein [Bacteroides sp. D22] Length = 161 Score = 42.2 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 9/69 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG ++++N +G+GFI E F H + V +TE +VT+D + Sbjct: 87 RGRVEFFNESRGFGFIKDLSGVEK---YFFHVNNVVGN----ITENNIVTFDLERGVKG- 138 Query: 64 KYSAENLKL 72 +A N+ L Sbjct: 139 -MNAVNISL 146 >gi|207724748|ref|YP_002255145.1| cold shock protein activator [Ralstonia solanacearum MolK2] gi|206589971|emb|CAQ36932.1| cold shock protein activator [Ralstonia solanacearum MolK2] Length = 68 Score = 42.2 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 F+ S + +GL EGQ V++D V +G+ A N+K + Sbjct: 28 FIRDSEIQLSGLQRFREGQRVSFDVVMG-PDGELIAVNIKPI 68 >gi|301118164|ref|XP_002906810.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora infestans T30-4] gi|262108159|gb|EEY66211.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora infestans T30-4] Length = 893 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 7/59 (11%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNL----TEGQLVTYDYVQNDANGKYSAENL 70 +G I S + G F+H S ++ + N+ +EGQ + ++ +Q+ A+GK S L Sbjct: 785 FGAILEASSGQRG---FVHISELSRDKVSNIHDVVSEGQEMEFECLQDGASGKMSRRVL 840 >gi|74144586|dbj|BAE27281.1| unnamed protein product [Mus musculus] Length = 449 Score = 41.9 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 336 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 386 >gi|145488336|ref|XP_001430172.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124397268|emb|CAK62774.1| unnamed protein product [Paramecium tetraurelia] Length = 328 Score = 41.9 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 12/78 (15%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAG-----LFNLTEGQLVTYDYVQN 59 G++K+Y+ + YGFI + G D+F+H + AG L G ++ + ++ Sbjct: 247 GTLKFYDEARAYGFIIMDL---DGSDLFVHCDDLTKAGMTKDFLRTAKHGNIIRFSFLIL 303 Query: 60 DANGK----YSAENLKLV 73 + GK A +L+ + Sbjct: 304 EYFGKYNKSKKAVDLQFI 321 >gi|116283763|gb|AAH29058.1| Csde1 protein [Mus musculus] Length = 449 Score = 41.9 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 336 FGFINYEVG--DSKKLFFHVKEVQ-DGVE-LQAGDEVEFSVILNQRTGKCSACNV 386 >gi|115733035|ref|XP_789065.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115950422|ref|XP_001190119.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 825 Score = 41.9 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 11 NPDKG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + KG YGF+ + T G +F H S V + + G V + + N + SA N Sbjct: 719 DSIKGQYGFL--DYDTGDGKKLFFHMSEVINGDVHT---GDDVEFVLITNQRTSRQSAVN 773 Query: 70 LKLV 73 ++ V Sbjct: 774 VRKV 777 Score = 38.0 bits (88), Expect = 0.50, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGF+ G +F H S + L G V ++ + + GK A + +P Sbjct: 72 YGFLQ--CCDRDGR-LFFHYSHFEGP-IDTLHIGDPVEFEMISDRRTGKPIASRIMRLPP 127 >gi|221119228|ref|XP_002164427.1| PREDICTED: similar to upstream of NRAS, partial [Hydra magnipapillata] Length = 456 Score = 41.9 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI ++ ++F H S + L G V Y+ + GK +A N+K +P Sbjct: 221 FGFIER---ADTVAEIFFHYSEFKDD-INELLIGDDVEYELQE--RAGKETAVNIKKLPT 274 Query: 76 SS 77 + Sbjct: 275 GT 276 >gi|292489023|ref|YP_003531910.1| cold shock-like protein CspL [Erwinia amylovora CFBP1430] gi|292900156|ref|YP_003539525.1| cold shock protein [Erwinia amylovora ATCC 49946] gi|291200004|emb|CBJ47128.1| putative cold shock protein [Erwinia amylovora ATCC 49946] gi|291554457|emb|CBA21960.1| Cold shock-like protein cspLA (CspL) [Erwinia amylovora CFBP1430] gi|312173187|emb|CBX81442.1| Cold shock-like protein cspLA (CspL) [Erwinia amylovora ATCC BAA-2158] Length = 160 Score = 41.9 bits (98), Expect = 0.033, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K+VP S Sbjct: 54 NKG--LSACAVKVVPDS 68 >gi|221106282|ref|XP_002168685.1| PREDICTED: similar to RNA-binding protein pippin, partial [Hydra magnipapillata] Length = 93 Score = 41.9 bits (98), Expect = 0.033, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++ + +KG+GF+ P+ + VFLH S + + + G V + + Sbjct: 11 NGTVVSFCREKGHGFVKPDNEERN---VFLHISDIEDE--YVVQTGDRVEFRTIPMPPKC 65 Query: 64 -KYSAENLKLVP 74 + A ++L+ Sbjct: 66 VERMAVEVRLIE 77 >gi|153809379|ref|ZP_01962047.1| hypothetical protein BACCAC_03693 [Bacteroides caccae ATCC 43185] gi|149127965|gb|EDM19187.1| hypothetical protein BACCAC_03693 [Bacteroides caccae ATCC 43185] Length = 152 Score = 41.9 bits (98), Expect = 0.033, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 9/72 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG ++++N +G+GFI E F H + V + E +VT+D + Sbjct: 90 RGRVEFFNEARGFGFIKDLNGVEK---YFFHVNNVVGN----IVENNIVTFDLERGTKG- 141 Query: 64 KYSAENLKLVPK 75 +A N+ L + Sbjct: 142 -MNAVNICLEKQ 152 >gi|260551019|ref|ZP_05825224.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter sp. RUH2624] gi|260405967|gb|EEW99454.1| cold-shock' DNA-binding domain-containing protein [Acinetobacter sp. RUH2624] Length = 97 Score = 41.9 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 10/72 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDANG 63 G +K YN DKG+GFI+ D+F H S AS G + V + + D G Sbjct: 8 GRVKQYNADKGFGFISTTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADNQG 58 Query: 64 KYSAENLKLVPK 75 K+ A ++ V Sbjct: 59 KFKAIKIERVDP 70 >gi|283780224|ref|YP_003370979.1| cold-shock DNA-binding domain-containing protein [Pirellula staleyi DSM 6068] gi|283438677|gb|ADB17119.1| cold-shock DNA-binding domain protein [Pirellula staleyi DSM 6068] Length = 139 Score = 41.5 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G IK + ++G+GFI + G DV+ H + V + Q V Y+ + D Sbjct: 1 MQYGIIKSVSFERGFGFIRQQR----GLDVYFHATVVVDQAFERIQPDQPVKYELEKRDR 56 Query: 62 NGKY 65 + Sbjct: 57 DAPK 60 >gi|197286813|ref|YP_002152685.1| cold-shock protein [Proteus mirabilis HI4320] gi|227354996|ref|ZP_03839407.1| cold-shock protein [Proteus mirabilis ATCC 29906] gi|194684300|emb|CAR45869.1| putative cold-shock protein [Proteus mirabilis HI4320] gi|227164783|gb|EEI49630.1| cold-shock protein [Proteus mirabilis ATCC 29906] Length = 160 Score = 41.5 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 1 MVHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I KW+ DKG+GFI E+GD+ + H + A + + +VT++ N Sbjct: 1 MAMNGTITKWF-EDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAIVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 SA +K++P S Sbjct: 54 MKG--LSAYAVKVIPDS 68 >gi|72116887|ref|XP_788134.1| PREDICTED: similar to snEchinoidin [Strongylocentrotus purpuratus] gi|115950839|ref|XP_001185543.1| PREDICTED: similar to snEchinoidin [Strongylocentrotus purpuratus] Length = 768 Score = 41.5 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +K YN + +GFI + VF H SAV + G V +D Sbjct: 222 TGVVKQYNDKRRFGFIRVNDTYNK---VFFHISAVPE---KYIEVGDEVRFDLFVGPKG 274 >gi|320353127|ref|YP_004194466.1| Excalibur domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320121629|gb|ADW17175.1| Excalibur domain protein [Desulfobulbus propionicus DSM 2032] Length = 186 Score = 41.5 bits (97), Expect = 0.037, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 9/72 (12%) Query: 1 MVHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQ 58 M G++ KW N ++G+G ITP G D+ + + G L E +++ + Sbjct: 1 MHTEGTLTKW-NSERGFGLITP---RRGGQDIAVQAADFPQDGCPPQLNE--RLSFSI-E 53 Query: 59 NDANGKYSAENL 70 DA GK A+N+ Sbjct: 54 TDAGGKRWAKNV 65 >gi|268592402|ref|ZP_06126623.1| putative cold-shock protein [Providencia rettgeri DSM 1131] gi|291312188|gb|EFE52641.1| putative cold-shock protein [Providencia rettgeri DSM 1131] Length = 160 Score = 41.5 bits (97), Expect = 0.037, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H VA+ L + + VT++ N Sbjct: 1 MAMNGTITTWF-EDKGFGFI----KDENGDNRYFHVVKVANPDL--IKKNAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K++P+S Sbjct: 54 NKG--LSAFAVKVIPES 68 >gi|227114570|ref|ZP_03828226.1| putative cold-shock protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 160 Score = 41.5 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAEVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K+VP+S Sbjct: 54 NKG--LSAYAVKVVPES 68 >gi|320163709|gb|EFW40608.1| hypothetical protein CAOG_01133 [Capsaspora owczarzaki ATCC 30864] Length = 1075 Score = 41.5 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E D+F H AV + + L V + ++ +G+ A ++L+P+ Sbjct: 401 YGFIERADMDE---DIFFHFRAVDPS-VGELKPSDEVDFIPIK--RSGQLVASAIRLLPR 454 Query: 76 SS 77 + Sbjct: 455 GT 456 >gi|50120514|ref|YP_049681.1| putative cold-shock protein [Pectobacterium atrosepticum SCRI1043] gi|49611040|emb|CAG74485.1| putative cold-shock protein [Pectobacterium atrosepticum SCRI1043] Length = 160 Score = 41.5 bits (97), Expect = 0.039, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K+VP+S Sbjct: 54 NKG--LSAYAVKVVPES 68 >gi|207739418|ref|YP_002257811.1| cold shock protein activator [Ralstonia solanacearum IPO1609] gi|206592793|emb|CAQ59699.1| cold shock protein activator [Ralstonia solanacearum IPO1609] Length = 68 Score = 41.5 bits (97), Expect = 0.039, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 F+ S + +GL EGQ V++D V +G+ A N+K + Sbjct: 28 FIRDSEIQLSGLQRFREGQRVSFDVVMG-PDGELIAVNIKPI 68 >gi|325121095|gb|ADY80618.1| hypothetical protein BDGL_000032 [Acinetobacter calcoaceticus PHEA-2] Length = 97 Score = 41.5 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 10/74 (13%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61 + G +K YN DKG+GFI D+F H S AS G + V + + D Sbjct: 6 YTGWVKQYNADKGFGFIETTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56 Query: 62 NGKYSAENLKLVPK 75 GK+ A ++ V Sbjct: 57 QGKFKAIKIERVDP 70 >gi|289664292|ref|ZP_06485873.1| cold-shock DNA-binding protein family protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 94 Score = 41.5 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M G++ ++ D+G+G ITP + GD+ F+H SA G G+ ++++ Sbjct: 1 MRTHGTLTRWSTDRGFGLITP---AQPGDEQFVHISAFPR-GFEAPRIGEALSFE 51 >gi|323449559|gb|EGB05446.1| hypothetical protein AURANDRAFT_18065 [Aureococcus anophagefferens] Length = 51 Score = 41.5 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 7/51 (13%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 G++ W++ K YGFI+PE ++ FLH + + +GQ V ++ Sbjct: 1 GTLLWFDQTKQYGFISPENGHDN---YFLHGIDI----YDQVHKGQKVQFE 44 >gi|319955580|ref|YP_004166847.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] gi|319424240|gb|ADV51349.1| cold-shock DNA-binding protein family [Cellulophaga algicola DSM 14237] Length = 147 Score = 41.5 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V +G ++++N KGYGFI + E F+H V L + E +V ++ + Sbjct: 85 VRKGRVEFFNDSKGYGFIKDTETQEK---FFVH---VQGC-LEEIKENNMVQFELERGMK 137 Query: 62 NGKYSAENLKLV 73 +A +K V Sbjct: 138 G--MNAVRVKKV 147 >gi|313225212|emb|CBY21006.1| unnamed protein product [Oikopleura dioica] Length = 643 Score = 41.5 bits (97), Expect = 0.043, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 +GFI EG D+F H S + G L + V ND +G+++A + V Sbjct: 572 FGFIRIEGVD---GDIFFHSS--EADGFDTLKKDDWVQSTIEWNDRSGRWNATKVTKV 624 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 8/70 (11%) Query: 15 GYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQN-----DANGKYS 66 G+GFI E + + +F H S V A + G V + +++ + G+ Sbjct: 381 GFGFIKREKAQKGDSRIFFHSSEVLEQQPASNKKIKVGDQVEFLTLRDPLARANYRGRCH 440 Query: 67 AENLKLVPKS 76 A ++++ +S Sbjct: 441 ATRIRIIAQS 450 >gi|293609127|ref|ZP_06691430.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829700|gb|EFF88062.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 97 Score = 41.5 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61 + G +K YNPDKG+GFI D+F H S AS G + V + + D Sbjct: 6 YTGWVKQYNPDKGFGFIETTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56 Query: 62 NGKYSAENLKLVPK 75 GK+ A ++ V Sbjct: 57 QGKFKAIKIERVDP 70 >gi|313221461|emb|CBY32211.1| unnamed protein product [Oikopleura dioica] Length = 643 Score = 41.5 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 +GFI EG D+F H S + G L + V ND +G+++A + V Sbjct: 572 FGFIRIEGVD---GDIFFHSS--EADGFDTLKKDDWVQSTIEWNDRSGRWNATKVTKV 624 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 8/70 (11%) Query: 15 GYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQN-----DANGKYS 66 G+GFI E + + +F H S V A + G V + +++ + G+ Sbjct: 381 GFGFIKREKAQKGDSRIFFHSSEVLEQQPASNKKIKVGDQVEFLTLRDPLARANYRGRCH 440 Query: 67 AENLKLVPKS 76 A ++++ +S Sbjct: 441 ATRIRIIAQS 450 >gi|198417545|ref|XP_002127595.1| PREDICTED: similar to AGAP004937-PA [Ciona intestinalis] Length = 1110 Score = 41.5 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 9/74 (12%) Query: 4 RGSIKWYNPDKG-YGFITPE----GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 + ++ + KG +GFI E +T +F H S V +T G V + + Sbjct: 982 KATV---DSIKGEFGFINYEVKGGDTTGGSGKLFFHMSEV-RDATQQITAGSTVEFSVIY 1037 Query: 59 NDANGKYSAENLKL 72 N +GK+SA ++L Sbjct: 1038 NQRSGKFSASKVRL 1051 Score = 36.9 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 4/62 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +F H S L + ++ + GK A + + K Sbjct: 158 YGFIKCADREGR---LFFHYSQFHGEAH-TLHINDEIEFEVSMDTRTGKPVAVQVVKLQK 213 Query: 76 SS 77 + Sbjct: 214 GT 215 >gi|17549275|ref|NP_522615.1| hypothetical protein RS02391 [Ralstonia solanacearum GMI1000] gi|17431527|emb|CAD18205.1| putative cold shock activator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 68 Score = 41.1 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 F+ S + L L EGQ V++D V +G+ A N+K + Sbjct: 28 FIRDSEIQLLRLQRLHEGQRVSFDVVMG-PDGEPIAVNIKPI 68 >gi|167761791|ref|ZP_02433918.1| hypothetical protein BACSTE_00132 [Bacteroides stercoris ATCC 43183] gi|167700297|gb|EDS16876.1| hypothetical protein BACSTE_00132 [Bacteroides stercoris ATCC 43183] Length = 146 Score = 41.1 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 RG I+++N +G+GFI E F H + V + + EG +VT+D + Sbjct: 85 RGRIEFFNEARGFGFIKDLAGIEK---YFFHVNNVVTD----VREGNIVTFDLERGAKG- 136 Query: 64 KYSAENL 70 +A N+ Sbjct: 137 -MNAVNI 142 >gi|317491867|ref|ZP_07950302.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920301|gb|EFV41625.1| cold-shock' DNA-binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 160 Score = 41.1 bits (96), Expect = 0.050, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K++P+S Sbjct: 54 NKG--LSAYAVKVIPES 68 >gi|302039051|ref|YP_003799373.1| cold shock protein modulated with ribosomal subunit interface-like protein [Candidatus Nitrospira defluvii] gi|300607115|emb|CBK43448.1| Cold shock protein modulated with ribosomal subunit interface-like protein [Candidatus Nitrospira defluvii] Length = 181 Score = 41.1 bits (96), Expect = 0.057, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 GYGFI + G +V+ H++AV ++ +GQ V ++ + Sbjct: 124 GYGFI----LKDGGGEVYFHKNAVKGIPFNDMEDGQEVIFESEPGEKG 167 >gi|56413767|ref|YP_150842.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362689|ref|YP_002142326.1| cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128024|gb|AAV77530.1| putative cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094166|emb|CAR59669.1| putative cold shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 70 Score = 41.1 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G G ITP + DV H SA L G V + + N G Sbjct: 6 TGIVKTFDCKSGKGLITPS---DGRKDVQFHISACRLHETEALIPGIRVEFCRI-NGLRG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PTAANV 67 >gi|218688877|ref|YP_002397089.1| stress protein, member of the CspA-family [Escherichia coli ED1a] gi|218426441|emb|CAR07267.1| stress protein, member of the CspA-family [Escherichia coli ED1a] Length = 70 Score = 41.1 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G GFI P + +V +H SA L V + V N G Sbjct: 6 TGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRDAEVLIPRLRVEFCRV-NGLRG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PTAANV 67 >gi|218133365|ref|ZP_03462169.1| hypothetical protein BACPEC_01230 [Bacteroides pectinophilus ATCC 43243] gi|217992238|gb|EEC58242.1| hypothetical protein BACPEC_01230 [Bacteroides pectinophilus ATCC 43243] Length = 452 Score = 41.1 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 8/54 (14%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 G+GFI E +DV++ S + GL G D VQ K S E Sbjct: 93 GFGFIRCENYLPGENDVYVAPSQIRRFGLKT---G-----DIVQGPKRAKNSGE 138 >gi|326801474|ref|YP_004319293.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21] gi|326552238|gb|ADZ80623.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21] Length = 262 Score = 40.7 bits (95), Expect = 0.060, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSA 37 + G IKW+N KG+G T SG VF+H + Sbjct: 1 MEIGVIKWFNNSKGFG----VADTVSGQ-VFVHIKS 31 >gi|149573030|ref|XP_001520218.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 502 Score = 40.7 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 9/17 (52%), Positives = 12/17 (70%) Query: 5 GSIKWYNPDKGYGFITP 21 G++KW+N GYGFI Sbjct: 63 GTVKWFNVRNGYGFINR 79 >gi|295133858|ref|YP_003584534.1| cold shock-like protein [Zunongwangia profunda SM-A87] gi|294981873|gb|ADF52338.1| cold shock-like protein [Zunongwangia profunda SM-A87] Length = 145 Score = 40.7 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 9/70 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G + + +KG+GFI + S GD++F+H + L+E V+Y ++ Sbjct: 84 TGVVISFFENKGFGFIKDDIS---GDNIFVHH----QDSVKPLSERMKVSYRKERSPKG- 135 Query: 64 KYSAENLKLV 73 + A +++++ Sbjct: 136 -FQATSVEVL 144 >gi|261822120|ref|YP_003260226.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] gi|261606133|gb|ACX88619.1| cold-shock DNA-binding domain protein [Pectobacterium wasabiae WPP163] Length = 160 Score = 40.7 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K+VP+S Sbjct: 54 NKG--LSAYAVKVVPES 68 >gi|226327443|ref|ZP_03802961.1| hypothetical protein PROPEN_01314 [Proteus penneri ATCC 35198] gi|225203969|gb|EEG86323.1| hypothetical protein PROPEN_01314 [Proteus penneri ATCC 35198] Length = 160 Score = 40.7 bits (95), Expect = 0.066, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 12/78 (15%) Query: 1 MVHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLH-RSAVASAGLFNLTEGQLVTYDYVQ 58 M G I KW+ DKG+GFI E+GD+ + H A + VT++ Sbjct: 1 MAMNGIITKWF-EDKGFGFI----KDENGDNRYFHVIKVANPALIKT---DANVTFEPTT 52 Query: 59 NDANGKYSAENLKLVPKS 76 N SA +K++P S Sbjct: 53 NTKG--LSAYAVKVIPDS 68 >gi|195375638|ref|XP_002046607.1| GJ12391 [Drosophila virilis] gi|194153765|gb|EDW68949.1| GJ12391 [Drosophila virilis] Length = 1040 Score = 40.7 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 200 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 255 Query: 76 S 76 Sbjct: 256 E 256 >gi|262375196|ref|ZP_06068430.1| cold-shock DNA-binding domain-containing protein [Acinetobacter lwoffii SH145] gi|262310209|gb|EEY91338.1| cold-shock DNA-binding domain-containing protein [Acinetobacter lwoffii SH145] Length = 208 Score = 40.7 bits (95), Expect = 0.069, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 1 MVHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M +G ++W++ GYGFI P + VFLH A G + G + Y + + Sbjct: 1 MRDQGRLVEWFDDQ-GYGFIQPSDPAKDR--VFLHIKDFAKPGPRPIV-GCALDYLVILD 56 Query: 60 DANGKYSAENL 70 + G+Y A+ + Sbjct: 57 E-RGRYRAQQV 66 >gi|254518105|ref|ZP_05130161.1| ribonuclease R [Clostridium sp. 7_2_43FAA] gi|226911854|gb|EEH97055.1| ribonuclease R [Clostridium sp. 7_2_43FAA] Length = 745 Score = 40.7 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 7/66 (10%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 KG+GF+ PE TE DVF+ S++ A G V + D NGK ++ Sbjct: 76 QKGFGFLLPE--TEGEKDVFIPSSSMNGA-----MNGDKVLVQITREDLNGKKREGEVRE 128 Query: 73 VPKSSN 78 V + SN Sbjct: 129 VLERSN 134 >gi|53803587|ref|YP_114575.1| cold-shock domain-contain protein [Methylococcus capsulatus str. Bath] gi|53757348|gb|AAU91639.1| cold-shock domain family protein [Methylococcus capsulatus str. Bath] Length = 225 Score = 40.7 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 +KG+GFI P D+F+H SA G +V Y + +A+G+ Sbjct: 27 DEKGFGFIRPFAGDH---DLFIHISAFKKGMSRRPQVGDIVHYRI-ETEADGRE 76 >gi|255535685|ref|YP_003096056.1| Cold-shock protein, DNA-binding [Flavobacteriaceae bacterium 3519-10] gi|255341881|gb|ACU07994.1| Cold-shock protein, DNA-binding [Flavobacteriaceae bacterium 3519-10] Length = 104 Score = 40.7 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 10/74 (13%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +V G + + DKGYGFIT GS E+ VF H + + +G V+++ ++ Sbjct: 41 LVKTGIVT-FLSDKGYGFITEAGSQEN---VFFH----ENNCAHQVKKGNKVSFEKERSP 92 Query: 61 ANGKYSAENLKLVP 74 +SA N+++V Sbjct: 93 KG--FSAINIQIVK 104 >gi|224539726|ref|ZP_03680265.1| hypothetical protein BACCELL_04635 [Bacteroides cellulosilyticus DSM 14838] gi|224518649|gb|EEF87754.1| hypothetical protein BACCELL_04635 [Bacteroides cellulosilyticus DSM 14838] Length = 149 Score = 40.7 bits (95), Expect = 0.072, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 9/64 (14%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 +N +GYGFI GS G+ F H ++ A G+ TEG VT++ + +A Sbjct: 93 FNVSRGYGFIKDLGS---GEKYFFHVTS-APEGI---TEGDNVTFEIERGTRG--MNAVR 143 Query: 70 LKLV 73 + ++ Sbjct: 144 ISII 147 >gi|146310755|ref|YP_001175829.1| cold-shock DNA-binding domain-containing protein [Enterobacter sp. 638] gi|145317631|gb|ABP59778.1| cold-shock DNA-binding protein family [Enterobacter sp. 638] Length = 161 Score = 40.7 bits (95), Expect = 0.075, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-EDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K++P+S Sbjct: 54 NKG--LSAFAVKVLPES 68 >gi|121604253|ref|YP_981582.1| cold-shock DNA-binding domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120593222|gb|ABM36661.1| cold-shock DNA-binding protein family [Polaromonas naphthalenivorans CJ2] Length = 69 Score = 40.7 bits (95), Expect = 0.075, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K Y P KG+GFI+ G D+F +R +V L EG V++ + Sbjct: 8 GVVKVYYPLKGFGFISRAK----GKDLFFYRDSVKDE--AALIEGATVSFQIKTTEKG-- 59 Query: 65 YSAENLK 71 A NL Sbjct: 60 LRAVNLT 66 >gi|331668013|ref|ZP_08368868.1| conserved domain protein [Escherichia coli TA271] gi|331064755|gb|EGI36659.1| conserved domain protein [Escherichia coli TA271] Length = 66 Score = 40.3 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G G ITP ++ DV LH SA+ +T G V + + N G Sbjct: 2 TGIVKNFDGKSGKGLITP---SDGRIDVQLHVSALNLRDAEEITTGLRVEFYRI-NGLRG 57 Query: 64 KYSAEN 69 +A Sbjct: 58 PSAANV 63 >gi|56758052|gb|AAW27166.1| SJCHGC09481 protein [Schistosoma japonicum] gi|226488138|emb|CAX75734.1| Calcium-regulated heat stable protein 1 (Calcium-regulated heat-stable protein of 24 kDa) [Schistosoma japonicum] gi|226489182|emb|CAX75735.1| Calcium-regulated heat stable protein 1 (Calcium-regulated heat-stable protein of 24 kDa) [Schistosoma japonicum] gi|226489184|emb|CAX75736.1| Calcium-regulated heat stable protein 1 (Calcium-regulated heat-stable protein of 24 kDa) [Schistosoma japonicum] gi|226489186|emb|CAX75737.1| Calcium-regulated heat stable protein 1 (Calcium-regulated heat-stable protein of 24 kDa) [Schistosoma japonicum] gi|226489188|emb|CAX75738.1| Calcium-regulated heat stable protein 1 (Calcium-regulated heat-stable protein of 24 kDa) [Schistosoma japonicum] Length = 117 Score = 40.3 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD-YVQNDANGKYSAE 68 + KG+GFI P+ GD +F+H + G + EG +V Y + N KY A Sbjct: 44 FCRKKGHGFIKPD---NGGDYLFVHVFDI--DGEYVPIEGDVVEYRKMLIPPKNEKYQAV 98 Query: 69 NLKLVPKSS 77 ++++V SS Sbjct: 99 HVRIVNLSS 107 >gi|178847411|pdb|2YTV|A Chain A, Solution Structure Of The Fifth Cold-Shock Domain Of The Human Kiaa0885 Protein (Unr Protein) Length = 79 Score = 40.3 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H V G+ L G V + + N GK SA N+ Sbjct: 20 FGFINYEVG--DSKKLFFHVKEVQ-DGIE-LQAGDEVEFSVILNQRTGKCSACNV 70 >gi|332667285|ref|YP_004450073.1| hypothetical protein Halhy_5375 [Haliscomenobacter hydrossis DSM 1100] gi|332336099|gb|AEE53200.1| protein of unknown function DUF88 [Haliscomenobacter hydrossis DSM 1100] Length = 315 Score = 40.3 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 GYGFI + VF H S++ +L G V + + +G+ A+ + +V Sbjct: 262 GYGFIKFPPNN-----VFFHFSSLVDYDFNDLEIGDSVQFSL-EPKEDGRMMAKEVIVVE 315 >gi|118382335|ref|XP_001024325.1| hypothetical protein TTHERM_00532020 [Tetrahymena thermophila] gi|89306092|gb|EAS04080.1| hypothetical protein TTHERM_00532020 [Tetrahymena thermophila SB210] Length = 452 Score = 40.3 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL--FNLTE 48 GS+K+++ K +GF + G D+F++ + AG+ L E Sbjct: 305 TGSLKFFDEKKNFGFFVLDS---DGSDIFVYYDDLEQAGITKKMLKE 348 >gi|332972912|gb|EGK10854.1| ribonuclease R [Desmospora sp. 8437] Length = 765 Score = 40.3 bits (94), Expect = 0.085, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 9/66 (13%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVA--SAGLFNL-------TEGQLVTYDYVQNDAN 62 KG+GF+ P+ DVF+H + + G F L EG + V+ Sbjct: 71 NAKGFGFVLPDAEFPFEQDVFIHGTDMNGAMDGDFVLARVESYKKEGMRPEGEIVRILKR 130 Query: 63 GKYSAE 68 G+ A Sbjct: 131 GRTEAV 136 >gi|322501458|emb|CBZ36537.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1902 Score = 40.3 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 +G + E + D+F+H S ++ G +G V + Sbjct: 816 FGKLEREPAQLG--DIFVHHSCISMDGFRVFVQGTAVRFSV 854 >gi|284036854|ref|YP_003386784.1| Cold-shock protein DNA-binding protein [Spirosoma linguale DSM 74] gi|283816147|gb|ADB37985.1| Cold-shock protein DNA-binding protein [Spirosoma linguale DSM 74] Length = 290 Score = 40.3 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 24/40 (60%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA 41 VH G +K Y P+KG+GF++ +++ DVF H V + Sbjct: 3 VHFGVVKKYFPEKGFGFVSHPLDSKTRQDVFFHIKNVQKS 42 >gi|146094937|ref|XP_001467428.1| hypothetical protein [Leishmania infantum JPCM5] gi|134071793|emb|CAM70486.1| hypothetical protein, unknown function [Leishmania infantum JPCM5] Length = 1901 Score = 40.3 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 +G + E + D+F+H S ++ G +G V + Sbjct: 816 FGKLEREPAQLG--DIFVHHSCISMDGFRVFVQGTAVRFSV 854 >gi|148261973|ref|YP_001236100.1| cold-shock DNA-binding domain-containing protein [Acidiphilium cryptum JF-5] gi|326405482|ref|YP_004285564.1| putative cold shock protein [Acidiphilium multivorum AIU301] gi|146403654|gb|ABQ32181.1| cold-shock DNA-binding protein family [Acidiphilium cryptum JF-5] gi|325052344|dbj|BAJ82682.1| putative cold shock protein [Acidiphilium multivorum AIU301] Length = 186 Score = 40.3 bits (94), Expect = 0.087, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G + + D YGFI T+ G +V+ HR++VA G L G V + +G Sbjct: 120 GQVVRFVADADYGFIA----TDDGREVYFHRNSVAGNGFARLRVGDDVRLAVAEG-RDGP 174 Query: 65 YS 66 + Sbjct: 175 QA 176 >gi|227327353|ref|ZP_03831377.1| putative cold-shock protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 160 Score = 40.3 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+G++ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGENRYFHV--IKVANPDLIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K++P+S Sbjct: 54 NKG--LSAYAVKVLPES 68 >gi|195171040|ref|XP_002026319.1| GL24571 [Drosophila persimilis] gi|194111214|gb|EDW33257.1| GL24571 [Drosophila persimilis] Length = 990 Score = 40.3 bits (94), Expect = 0.091, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI E +F H S + + +L G V ++ + GK A + + Sbjct: 190 YGFIQ---CCERQARLFFHFSQFSGN-IDHLKIGDPVEFEMTYDRRTGKPIASQVSKIAP 245 Query: 76 S 76 Sbjct: 246 E 246 >gi|75910292|ref|YP_324588.1| cold-shock DNA-binding protein family protein [Anabaena variabilis ATCC 29413] gi|75704017|gb|ABA23693.1| cold-shock DNA-binding protein family [Anabaena variabilis ATCC 29413] Length = 188 Score = 40.3 bits (94), Expect = 0.091, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 D+GYGFI T G +V+ HR+++ + L G + + + D A ++ Sbjct: 126 SDEGYGFIE----TPDGSEVYFHRNSLFNGDFEQLQVGDEIRFAQEEGDKG--PQASTVR 179 Query: 72 LV 73 L+ Sbjct: 180 LI 181 >gi|325106180|ref|YP_004275834.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM 12145] gi|324975028|gb|ADY54012.1| cold-shock DNA-binding protein family [Pedobacter saltans DSM 12145] Length = 146 Score = 40.3 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 9/72 (12%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 + G + + DKGYGFI + + E+ +F+H + + A + E VT+ Sbjct: 84 NTGVVTSFFSDKGYGFIKEDKTNEN---IFVHSNNLTEA----VKERDKVTFKKEMTPRG 136 Query: 63 GKYSAENLKLVP 74 Y+A ++ + Sbjct: 137 --YAAIEVRKIK 146 >gi|210608520|ref|ZP_03287896.1| hypothetical protein CLONEX_00075 [Clostridium nexile DSM 1787] gi|210153011|gb|EEA84017.1| hypothetical protein CLONEX_00075 [Clostridium nexile DSM 1787] Length = 441 Score = 40.3 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 8/54 (14%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 GYGFI + +DV++ S + GL G D + + K AE Sbjct: 82 GYGFIRSDNYLPGENDVYVSPSQIRRFGLKT---G-----DIISGNTRIKTQAE 127 >gi|152970826|ref|YP_001335935.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895333|ref|YP_002920068.1| cold shock protein E [Klebsiella pneumoniae NTUH-K2044] gi|262041867|ref|ZP_06015051.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330002098|ref|ZP_08304183.1| cold-shock DNA-binding domain protein [Klebsiella sp. MS 92-3] gi|150955675|gb|ABR77705.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547650|dbj|BAH64001.1| cold shock protein E [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040772|gb|EEW41859.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537467|gb|EGF63704.1| cold-shock DNA-binding domain protein [Klebsiella sp. MS 92-3] Length = 160 Score = 40.3 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+G++ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGENRYFHV--IKVANPDLIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K++P+S Sbjct: 54 NKG--LSAYAVKVIPES 68 >gi|290508923|ref|ZP_06548294.1| cold shock protein E [Klebsiella sp. 1_1_55] gi|289778317|gb|EFD86314.1| cold shock protein E [Klebsiella sp. 1_1_55] Length = 160 Score = 40.3 bits (94), Expect = 0.095, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+G++ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGENRYFHV--IKVANPDLIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K++P+S Sbjct: 54 NKG--LSAYAVKVIPES 68 >gi|16129517|ref|NP_416076.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. MG1655] gi|26249027|ref|NP_755067.1| cold shock-like protein cspF [Escherichia coli CFT073] gi|89108400|ref|AP_002180.1| cold shock protein [Escherichia coli str. K-12 substr. W3110] gi|170081226|ref|YP_001730546.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|193066948|ref|ZP_03047917.1| conserved domain protein [Escherichia coli E110019] gi|194436432|ref|ZP_03068533.1| conserved domain protein [Escherichia coli 101-1] gi|218551642|ref|YP_002385434.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC 35469] gi|218554120|ref|YP_002387033.1| cold shock protein; Qin prophage [Escherichia coli IAI1] gi|218561569|ref|YP_002394482.1| cold shock protein; Qin prophage [Escherichia coli S88] gi|218699872|ref|YP_002407501.1| cold shock protein; Qin prophage [Escherichia coli IAI39] gi|218705060|ref|YP_002412579.1| cold shock protein; Qin prophage [Escherichia coli UMN026] gi|238900778|ref|YP_002926574.1| Qin prophage; cold shock protein [Escherichia coli BW2952] gi|260855296|ref|YP_003229187.1| putative cold shock protein [Escherichia coli O26:H11 str. 11368] gi|300899667|ref|ZP_07117898.1| cold-shock DNA-binding domain protein [Escherichia coli MS 198-1] gi|300903930|ref|ZP_07121825.1| cold-shock DNA-binding domain protein [Escherichia coli MS 84-1] gi|300919924|ref|ZP_07136386.1| cold-shock DNA-binding domain protein [Escherichia coli MS 115-1] gi|300925264|ref|ZP_07141159.1| cold-shock DNA-binding domain protein [Escherichia coli MS 182-1] gi|300938349|ref|ZP_07153103.1| cold-shock DNA-binding domain protein [Escherichia coli MS 21-1] gi|301306488|ref|ZP_07212554.1| cold-shock DNA-binding domain protein [Escherichia coli MS 124-1] gi|301326429|ref|ZP_07219781.1| cold-shock DNA-binding domain protein [Escherichia coli MS 78-1] gi|301647721|ref|ZP_07247514.1| cold-shock DNA-binding domain protein [Escherichia coli MS 146-1] gi|307138213|ref|ZP_07497569.1| putative cold shock protein [Escherichia coli H736] gi|307310876|ref|ZP_07590522.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|331642146|ref|ZP_08343281.1| major cold shock protein Cspa1 [Escherichia coli H736] gi|331680502|ref|ZP_08381161.1| major cold shock protein Cspa1 [Escherichia coli H591] gi|71154160|sp|P0A977|CSPF_ECOL6 RecName: Full=Cold shock-like protein CspF; Short=CSP-F gi|71154161|sp|P0A976|CSPF_ECOLI RecName: Full=Cold shock-like protein CspF; Short=CSP-F gi|26109434|gb|AAN81637.1|AE016765_39 Cold shock-like protein cspF [Escherichia coli CFT073] gi|1742553|dbj|BAA15257.1| cold shock protein [Escherichia coli str. K12 substr. W3110] gi|1787840|gb|AAC74631.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. MG1655] gi|2226342|gb|AAB61740.1| CspF [Escherichia coli str. K-12 substr. W3110] gi|169889061|gb|ACB02768.1| Qin prophage; cold shock protein [Escherichia coli str. K-12 substr. DH10B] gi|192959538|gb|EDV89972.1| conserved domain protein [Escherichia coli E110019] gi|194424464|gb|EDX40450.1| conserved domain protein [Escherichia coli 101-1] gi|218359184|emb|CAQ91848.1| cold shock protein; Qin prophage [Escherichia fergusonii ATCC 35469] gi|218360888|emb|CAQ98458.1| cold shock protein; Qin prophage [Escherichia coli IAI1] gi|218368338|emb|CAR06157.1| cold shock protein; Qin prophage [Escherichia coli S88] gi|218369858|emb|CAR17632.1| cold shock protein; Qin prophage [Escherichia coli IAI39] gi|218432157|emb|CAR13045.1| cold shock protein; Qin prophage [Escherichia coli UMN026] gi|238863369|gb|ACR65367.1| Qin prophage; cold shock protein [Escherichia coli BW2952] gi|257753945|dbj|BAI25447.1| predicted cold shock protein [Escherichia coli O26:H11 str. 11368] gi|260449319|gb|ACX39741.1| cold-shock DNA-binding domain protein [Escherichia coli DH1] gi|300356792|gb|EFJ72662.1| cold-shock DNA-binding domain protein [Escherichia coli MS 198-1] gi|300404090|gb|EFJ87628.1| cold-shock DNA-binding domain protein [Escherichia coli MS 84-1] gi|300413045|gb|EFJ96355.1| cold-shock DNA-binding domain protein [Escherichia coli MS 115-1] gi|300418597|gb|EFK01908.1| cold-shock DNA-binding domain protein [Escherichia coli MS 182-1] gi|300456685|gb|EFK20178.1| cold-shock DNA-binding domain protein [Escherichia coli MS 21-1] gi|300838294|gb|EFK66054.1| cold-shock DNA-binding domain protein [Escherichia coli MS 124-1] gi|300846845|gb|EFK74605.1| cold-shock DNA-binding domain protein [Escherichia coli MS 78-1] gi|301074156|gb|EFK88962.1| cold-shock DNA-binding domain protein [Escherichia coli MS 146-1] gi|306909054|gb|EFN39550.1| cold-shock DNA-binding domain protein [Escherichia coli W] gi|312946161|gb|ADR26988.1| putative cold shock protein [Escherichia coli O83:H1 str. NRG 857C] gi|315060858|gb|ADT75185.1| Qin prophage; cold shock protein [Escherichia coli W] gi|315136199|dbj|BAJ43358.1| Qin prophage; cold shock protein [Escherichia coli DH1] gi|315253260|gb|EFU33228.1| cold-shock DNA-binding domain protein [Escherichia coli MS 85-1] gi|320197746|gb|EFW72354.1| Cold shock protein CspF [Escherichia coli EC4100B] gi|320643976|gb|EFX13063.1| cold shock-like protein CspF [Escherichia coli O157:H- str. 493-89] gi|320649405|gb|EFX17947.1| cold shock-like protein CspF [Escherichia coli O157:H- str. H 2687] gi|320660404|gb|EFX27872.1| cold shock-like protein CspF [Escherichia coli O55:H7 str. USDA 5905] gi|323156711|gb|EFZ42849.1| cold shock-like protein cspI [Escherichia coli EPECa14] gi|323169850|gb|EFZ55506.1| cold shock-like protein cspI [Escherichia coli LT-68] gi|323378571|gb|ADX50839.1| cold-shock DNA-binding domain protein [Escherichia coli KO11] gi|323942037|gb|EGB38215.1| cold-shock DNA-binding domain-containing protein [Escherichia coli E482] gi|323947933|gb|EGB43928.1| cold-shock DNA-binding domain-containing protein [Escherichia coli H120] gi|323973800|gb|EGB68974.1| cold-shock DNA-binding domain-containing protein [Escherichia coli TA007] gi|324112034|gb|EGC06012.1| cold-shock DNA-binding domain-containing protein [Escherichia fergusonii B253] gi|331038944|gb|EGI11164.1| major cold shock protein Cspa1 [Escherichia coli H736] gi|331071965|gb|EGI43301.1| major cold shock protein Cspa1 [Escherichia coli H591] gi|332343267|gb|AEE56601.1| cold shock-like protein CspI [Escherichia coli UMNK88] Length = 70 Score = 40.3 bits (94), Expect = 0.095, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G G ITP ++ DV LH SA+ +T G V + + N G Sbjct: 6 TGIVKTFDGKSGKGLITP---SDGRIDVQLHVSALNLRDAEEITTGLRVEFCRI-NGLRG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PSAANV 67 >gi|156743639|ref|YP_001433768.1| transcription termination factor Rho [Roseiflexus castenholzii DSM 13941] gi|156234967|gb|ABU59750.1| transcription termination factor Rho [Roseiflexus castenholzii DSM 13941] Length = 445 Score = 40.3 bits (94), Expect = 0.099, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 GYGF+ E DDV++ +S + GL G V Sbjct: 91 GYGFLRGERMLPGPDDVYVSQSQIRRFGLRT---GDRV 125 >gi|206578678|ref|YP_002237869.1| cold-shock DNA-binding domain protein [Klebsiella pneumoniae 342] gi|288934798|ref|YP_003438857.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] gi|206567736|gb|ACI09512.1| cold-shock DNA-binding domain protein [Klebsiella pneumoniae 342] gi|288889507|gb|ADC57825.1| cold-shock DNA-binding domain protein [Klebsiella variicola At-22] Length = 160 Score = 40.3 bits (94), Expect = 0.099, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+G++ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGENRYFHV--IKVANPDLIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K++P+S Sbjct: 54 NKG--LSAYAVKVIPES 68 >gi|307825190|ref|ZP_07655410.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] gi|307733646|gb|EFO04503.1| cold-shock DNA-binding domain protein [Methylobacter tundripaludum SV96] Length = 180 Score = 40.3 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G++ P+K +GFI E G +++ HR++V +G L G + Y + D G Sbjct: 118 TGTVSRMLPEKDHGFIE----AEDGHEIYFHRNSVTGSGFDALQVGDEIRY-VEETDDLG 172 Query: 64 KYSAEN 69 ++ Sbjct: 173 PQASIV 178 >gi|255691170|ref|ZP_05414845.1| cold shock protein [Bacteroides finegoldii DSM 17565] gi|260623073|gb|EEX45944.1| cold shock protein [Bacteroides finegoldii DSM 17565] Length = 148 Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 9/72 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G ++++N +G+GFI + F H + A + E +VT+D + Sbjct: 86 KGRVEFFNESRGFGFIKDLSGVDK---YFFHVNNAAP----GIAENDIVTFDLERGVKG- 137 Query: 64 KYSAENLKLVPK 75 +A N+ L + Sbjct: 138 -MNAVNICLEKQ 148 >gi|322493897|emb|CBZ29188.1| hypothetical protein, unknown function [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1916 Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 +G + E + D+F+H S ++ G +G V + Sbjct: 822 FGKLEREPAQLG--DIFVHHSCISMDGFRVFVQGTTVRFSV 860 >gi|320352876|ref|YP_004194215.1| Cold-shock protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320121378|gb|ADW16924.1| Cold-shock protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 180 Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 YGFI + DVF H +A+ + +L EG V + + D Sbjct: 127 YGFIVTDDKL----DVFFHANALKDVTINDLAEGDEVLFAMEEGDKG 169 >gi|253687854|ref|YP_003017044.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754432|gb|ACT12508.1| cold-shock DNA-binding domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 160 Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+G++ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGENRYFHV--IKVANPDLIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K++P+S Sbjct: 54 NKG--LSAYAVKVLPES 68 >gi|170020091|ref|YP_001725045.1| cold-shock DNA-binding domain-containing protein [Escherichia coli ATCC 8739] gi|293405061|ref|ZP_06649053.1| cold shock-like protein cspF [Escherichia coli FVEC1412] gi|298380706|ref|ZP_06990305.1| cold shock-like protein cspF [Escherichia coli FVEC1302] gi|312969570|ref|ZP_07783753.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|169755019|gb|ACA77718.1| cold-shock DNA-binding domain protein [Escherichia coli ATCC 8739] gi|291427269|gb|EFF00296.1| cold shock-like protein cspF [Escherichia coli FVEC1412] gi|298278148|gb|EFI19662.1| cold shock-like protein cspF [Escherichia coli FVEC1302] gi|310337855|gb|EFQ02944.1| cold shock-like protein cspI [Escherichia coli 1827-70] gi|315619488|gb|EFV00016.1| cold shock-like protein cspI [Escherichia coli 3431] gi|323185904|gb|EFZ71261.1| cold shock-like protein cspI [Escherichia coli 1357] gi|323190391|gb|EFZ75667.1| cold shock-like protein cspI [Escherichia coli RN587/1] gi|325499886|gb|EGC97745.1| Qin prophage; cold shock protein [Escherichia fergusonii ECD227] Length = 66 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G G ITP ++ DV LH SA+ +T G V + + N G Sbjct: 2 TGIVKTFDGKSGKGLITP---SDGRIDVQLHVSALNLRDAEEITTGLRVEFCRI-NGLRG 57 Query: 64 KYSAEN 69 +A Sbjct: 58 PSAANV 63 >gi|256088411|ref|XP_002580331.1| hypothetical protein [Schistosoma mansoni] gi|238665887|emb|CAZ36570.1| expressed protein [Schistosoma mansoni] Length = 112 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDD-VFLHRSAVASAGLFNLTEGQLVTYD-YVQNDAN 62 G I + DKG+GFI P+ +GDD +F+H + G + EG +V Y + N Sbjct: 34 GKIISFCRDKGHGFIKPD----NGDDCLFVHVFDI--DGEYVPIEGDVVEYRKMLIPPKN 87 Query: 63 GKYSAENLKLV 73 KY A ++++V Sbjct: 88 EKYQAVHVRIV 98 >gi|254787275|ref|YP_003074704.1| hypothetical protein TERTU_3357 [Teredinibacter turnerae T7901] gi|237685617|gb|ACR12881.1| conserved hypothetical protein [Teredinibacter turnerae T7901] Length = 258 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 16/82 (19%) Query: 1 MVHRGSIKWYNPDKGYGFIT-----PEGSTESGDDVFLHRSAVASAG-------LFNLTE 48 + HRG + + N +KG+GF++ ESG +F H S + G L Sbjct: 175 IRHRGVLDYVNEEKGFGFLSIRTGYQLTDIESG--IFCHISQLTEDGMGVSNDRFSALAS 232 Query: 49 GQLV-TYDYVQNDANGKYSAEN 69 V +D ++++ G + AEN Sbjct: 233 NNAVIEFDKIKSERGG-FQAEN 253 >gi|188587465|ref|YP_001919010.1| transcription termination factor Rho [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352152|gb|ACB86422.1| transcription termination factor Rho [Natranaerobius thermophilus JW/NM-WN-LF] Length = 414 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 GYGF+ P+G T +D+++ S + GL G LV+ Sbjct: 61 GYGFLRPDGYTPGSNDIYISASQIKRFGLKT---GDLVS 96 >gi|326429250|gb|EGD74820.1| hypothetical protein PTSG_07053 [Salpingoeca sp. ATCC 50818] Length = 856 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 9/69 (13%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSA----VASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 ++G+GFI G +F H S+ V L V ++ V G A Sbjct: 116 SERGFGFIK--SGRFPGQSLFFHVSSFNFHVGRDDRSLLH--MPVEFEIVDRGRRG-IGA 170 Query: 68 ENLKLVPKS 76 N+ +V +S Sbjct: 171 VNIDIVHRS 179 Score = 37.2 bits (86), Expect = 0.67, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K P G+GFIT + D+F+ S V G L V ++ G Sbjct: 561 GWVKRLMPGSGFGFITSFPKLD---DIFMPFSNVV--GHCELDVNMWVEFEIT-PSPRGP 614 Query: 65 YSAENLKLVP 74 +A + P Sbjct: 615 VAARVCQADP 624 >gi|291617368|ref|YP_003520110.1| Hypothetical Protein PANA_1815 [Pantoea ananatis LMG 20103] gi|291152398|gb|ADD76982.1| Hypothetical Protein PANA_1815 [Pantoea ananatis LMG 20103] gi|327393809|dbj|BAK11231.1| putative cold-shock protein [Pantoea ananatis AJ13355] Length = 160 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-QDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K++P+S Sbjct: 54 NKG--LSAFAVKVLPES 68 >gi|270263682|ref|ZP_06191951.1| cold-shock DNA-binding domain-containing protein [Serratia odorifera 4Rx13] gi|270042566|gb|EFA15661.1| cold-shock DNA-binding domain-containing protein [Serratia odorifera 4Rx13] Length = 163 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G I + DKG+GFIT E+G++ + H V + L + + VT++ N Sbjct: 3 MMMNGKITTFFEDKGFGFIT----DENGENRYFHVIKVQNPEL--IKKNAAVTFEPTNNT 56 Query: 61 ANGKYSAENLKLVPK 75 A ++ K Sbjct: 57 KGPSAYAVKVQAASK 71 >gi|157369425|ref|YP_001477414.1| cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] gi|157321189|gb|ABV40286.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] Length = 163 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 8/76 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M+ G I + DKG+GFIT E+G++ + H V + L + + VT++ N Sbjct: 3 MMMNGKITTFFEDKGFGFIT----DENGENRYFHVIKVQNPEL--IKKNAAVTFEPTNNT 56 Query: 61 ANGKYSAENLKLVPKS 76 SA +K++ S Sbjct: 57 KG--PSAFAVKVLASS 70 >gi|305666897|ref|YP_003863184.1| cold shock protein DNA-binding protein [Maribacter sp. HTCC2170] gi|88709122|gb|EAR01356.1| cold shock protein, putative DNA-binding protein [Maribacter sp. HTCC2170] Length = 151 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 V G + +Y+ KG+GFI + F H S + + + E V+++ + Sbjct: 89 VRNGKVSFYDSSKGFGFIIDSVDQQK---YFTHVSGL----IDEIVENDTVSFELEKGMR 141 Query: 62 NGKYSAENLKLV 73 +A +K + Sbjct: 142 G--MNAVRVKKI 151 >gi|307324672|ref|ZP_07603878.1| putative cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306889554|gb|EFN20534.1| putative cold-shock DNA-binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 74 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +++ ++ ++G+G + T G F H S + G L+ GQ V + Sbjct: 1 MVTATVREWSDEEGWG-VLDSPETPGG--CFGHFSDIQVTGFRTLSPGQQVDLE 51 >gi|332972991|gb|EGK10931.1| cold-shock DNA-binding domain protein [Kingella kingae ATCC 23330] Length = 280 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G IK +N + +GFI T VF H A+ S + + G+ V VQN+ Sbjct: 7 KGKIKSWNAECAFGFIE----TTDKKQVFFHIDALQSPQIKPIV-GETVQLLAVQNEKGW 61 Query: 64 KYSAE 68 K +A Sbjct: 62 KATAV 66 >gi|188533190|ref|YP_001906987.1| Putative cold-shock protein [Erwinia tasmaniensis Et1/99] gi|188028232|emb|CAO96090.1| Putative cold-shock protein [Erwinia tasmaniensis Et1/99] Length = 160 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 SA +K+ P+S Sbjct: 54 SKG--LSAYAVKVAPES 68 >gi|297159817|gb|ADI09529.1| hypothetical protein SBI_06409 [Streptomyces bingchenggensis BCW-1] Length = 71 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Query: 2 VHRGSIKWYNPDKGYGFI-TPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 + +++ ++ ++G+G + P+ H SAV + G +L GQ VT D Sbjct: 1 MVTATVREWHDEEGWGVLDCPDTPGGCWG----HFSAVEAQGFRSLAPGQRVTLD 51 >gi|78189938|ref|YP_380276.1| cold shock protein [Chlorobium chlorochromatii CaD3] gi|78172137|gb|ABB29233.1| Cold shock protein [Chlorobium chlorochromatii CaD3] Length = 310 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 GYGFI + +F H S + +L V + +ND G A+++ LV Sbjct: 251 GYGFIKFPPNN-----LFFHYSNLNGVDFNDLKVDDAVQFVIGKND-RGDEVAKDIVLVA 304 Query: 75 KSS 77 + S Sbjct: 305 EES 307 >gi|266621437|ref|ZP_06114372.1| transcription termination factor Rho [Clostridium hathewayi DSM 13479] gi|288866877|gb|EFC99175.1| transcription termination factor Rho [Clostridium hathewayi DSM 13479] Length = 570 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 8/54 (14%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 G+GFI E +DV++ S + + G D +Q K +AE Sbjct: 209 GFGFIRCENYLPGENDVYVAPSQIRRFNMKT---G-----DIIQGSRRVKTAAE 254 >gi|300857052|ref|YP_003782036.1| putative ribonuclease R [Clostridium ljungdahlii DSM 13528] gi|300437167|gb|ADK16934.1| predicted ribonuclease R [Clostridium ljungdahlii DSM 13528] Length = 712 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY-SAENLK 71 KGYGF+ PE G DVF+ S + A G V + + GK E ++ Sbjct: 76 QKGYGFVIPE---NEGADVFVPSSYLNGA-----MNGDKVVVKITKMEDKGKKCEGEIIR 127 Query: 72 LVPKS 76 ++ ++ Sbjct: 128 VLERA 132 >gi|163847405|ref|YP_001635449.1| hypothetical protein Caur_1843 [Chloroflexus aurantiacus J-10-fl] gi|222525254|ref|YP_002569725.1| cold-shock DNA-binding domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163668694|gb|ABY35060.1| protein of unknown function DUF1294 [Chloroflexus aurantiacus J-10-fl] gi|222449133|gb|ACM53399.1| cold-shock DNA-binding domain protein [Chloroflexus sp. Y-400-fl] Length = 190 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 21/78 (26%) Query: 2 VHRGS-IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQL-------VT 53 H+G + W DKGYGFI S D VF H +L + Q VT Sbjct: 4 RHKGKIVVW-KDDKGYGFIE---SANGRDRVFFHI--------RHLADRQRRPELNTSVT 51 Query: 54 YDYVQNDANGKYSAENLK 71 Y ND G+ A +++ Sbjct: 52 YALG-NDDKGRVQAIDVR 68 >gi|259907746|ref|YP_002648102.1| cold-shock protein [Erwinia pyrifoliae Ep1/96] gi|224963368|emb|CAX54854.1| cold-shock protein [Erwinia pyrifoliae Ep1/96] gi|310764747|gb|ADP09697.1| cold-shock protein [Erwinia sp. Ejp617] Length = 160 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 SA +K+ P+S Sbjct: 54 TKG--LSAYAVKVAPES 68 >gi|330877321|gb|EGH11470.1| hypothetical protein PSYMP_17475 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 20 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 8/17 (47%), Positives = 13/17 (76%) Query: 2 VHRGSIKWYNPDKGYGF 18 G++KW+N +KG+GF Sbjct: 4 RQTGTVKWFNDEKGFGF 20 >gi|145503922|ref|XP_001437933.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124405094|emb|CAK70536.1| unnamed protein product [Paramecium tetraurelia] Length = 190 Score = 39.2 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43 G +K+++ +K YGFI + G D+F++ + G+ Sbjct: 105 TGYLKFFDENKNYGFIVMDS---DGSDIFVYADDLVKTGI 141 >gi|226364927|ref|YP_002782709.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226243416|dbj|BAH53764.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 949 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD---YVQND 60 G+++ ++ ++G G I + + + H VA +G+ +LT GQ VT++ V Sbjct: 878 TGTVRTWSDEEGCGVIDSDATPGGA---WTHARNVAGSGVHSLTPGQHVTFEPEKVVSGT 934 Query: 61 ANGKY-SAENLKLV 73 +G + A +++ V Sbjct: 935 QDGYHYRALDVRKV 948 >gi|317053944|ref|YP_004117969.1| cold-shock DNA-binding domain-containing protein [Pantoea sp. At-9b] gi|316951939|gb|ADU71413.1| cold-shock DNA-binding domain protein [Pantoea sp. At-9b] Length = 160 Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-QDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K+ P+S Sbjct: 54 NKG--LSAYAVKVAPES 68 >gi|148657328|ref|YP_001277533.1| transcription termination factor Rho [Roseiflexus sp. RS-1] gi|148569438|gb|ABQ91583.1| transcription termination factor Rho [Roseiflexus sp. RS-1] Length = 444 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 GYGF+ E +DV++ +S + GL G V Sbjct: 90 GYGFLRGERMLPGPNDVYVSQSQIRRFGLRT---GDRV 124 >gi|309789697|ref|ZP_07684277.1| transcription termination factor Rho [Oscillochloris trichoides DG6] gi|308228183|gb|EFO81831.1| transcription termination factor Rho [Oscillochloris trichoides DG6] Length = 417 Score = 39.2 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G+GF+ + DDV++ +S + GL G + Sbjct: 61 GFGFLRGDRMLPGSDDVYVSQSQIRRFGLRT---GDRI 95 >gi|333030414|ref|ZP_08458475.1| Cold-shock protein DNA-binding [Bacteroides coprosuis DSM 18011] gi|332741011|gb|EGJ71493.1| Cold-shock protein DNA-binding [Bacteroides coprosuis DSM 18011] Length = 144 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 G +K+YN D+G+GFI + S E F H S + VT+ ++ G Sbjct: 85 GHVKFYNEDRGFGFIKDKESVEQ---YFFHISNAPED----IERNDHVTFRL-EDSPRGL 136 Query: 65 YSAEN 69 + E Sbjct: 137 NAVEV 141 >gi|145539193|ref|XP_001455291.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124423090|emb|CAK87894.1| unnamed protein product [Paramecium tetraurelia] Length = 199 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43 G +K+++ +K YGFI + + G D+F++ +A G+ Sbjct: 114 TGYLKFFDENKNYGFIVMD---QDGSDLFVYADDLAKTGI 150 >gi|294788309|ref|ZP_06753552.1| membrane protein,putative [Simonsiella muelleri ATCC 29453] gi|294483740|gb|EFG31424.1| membrane protein,putative [Simonsiella muelleri ATCC 29453] Length = 223 Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Query: 7 IKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 +KW N ++G+GF+ + E +D+F H + + + + + VT +D ++S Sbjct: 24 VKW-NSERGFGFV---KTAEVANDIFFHVNTLVGKDEISPQQNESVTVYAKYDDDKKRWS 79 Query: 67 AENLK 71 A + Sbjct: 80 ATKIT 84 >gi|84623636|ref|YP_451008.1| hypothetical protein XOO_1979 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|121632095|ref|YP_001001457.1| integral membrane protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|188576851|ref|YP_001913780.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188577043|ref|YP_001913972.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|84367576|dbj|BAE68734.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|116247011|gb|ABJ89937.1| integral membrane protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|188521303|gb|ACD59248.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521495|gb|ACD59440.1| integral membrane protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 60 Score = 39.2 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G ++ +N KG GF TP G GD F+H SA A G+++TY ++ Sbjct: 1 MRYQGRLRDWNDHKGVGFATPNG---GGDRAFVHISAFAQQSRR-PRNGEIITYAIERDA 56 Query: 61 AN 62 Sbjct: 57 QK 58 >gi|119629320|gb|EAX08915.1| hCG1795283 [Homo sapiens] Length = 222 Score = 39.2 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 30 DVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76 D+ +H+S + G + E + V + A GK SAENL + ++ Sbjct: 89 DIIVHQSKLHVEGFQSWKEDEAVDFTL---SAFGKKSAENLYALSEA 132 >gi|108999824|ref|XP_001114640.1| PREDICTED: protein lin-28 homolog A-like [Macaca mulatta] Length = 143 Score = 39.2 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 7/29 (24%), Positives = 15/29 (51%) Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 H+S + G +L EG+ V + + ++ Sbjct: 9 HQSKLHMEGFRSLKEGEAVEFTFKKSAKG 37 >gi|300697693|ref|YP_003748354.1| cold shock activator transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074417|emb|CBJ53967.1| putative cold shock activator transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 68 Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 F+ S + +G EGQ V++D V +G+ A N+K + Sbjct: 28 FIRDSEIQLSGSQRFHEGQRVSFDVVMG-PDGELIAVNIKPI 68 >gi|304398673|ref|ZP_07380545.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] gi|304353884|gb|EFM18259.1| cold-shock DNA-binding domain protein [Pantoea sp. aB] Length = 162 Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-EDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K+ P S Sbjct: 54 NKG--LSAYAVKVAPTS 68 >gi|313239188|emb|CBY14146.1| unnamed protein product [Oikopleura dioica] Length = 180 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Query: 5 GSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDAN 62 G++ K N YGFI + G +F H S VA+ G L V ++ + ++ N Sbjct: 55 GTVEKMMNS---YGFI--DVLDSRGR-IFFHFSQVANGGNNEQLRVADEVEFEMIMDERN 108 Query: 63 GKYSA 67 G+ A Sbjct: 109 GRIVA 113 >gi|293343215|ref|XP_002725422.1| PREDICTED: Y box binding protein 1-like [Rattus norvegicus] gi|293355088|ref|XP_002728620.1| PREDICTED: Y box binding protein 1-like [Rattus norvegicus] Length = 101 Score = 38.8 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 7/57 (12%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDAN 62 +N G G I ++ +DVF+H++A+ L ++ + + V +D+V+ + + Sbjct: 6 FNVWNGCGLI---NRNDTKEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEKD 59 >gi|331652936|ref|ZP_08353941.1| conserved domain protein [Escherichia coli M718] gi|331049034|gb|EGI21106.1| conserved domain protein [Escherichia coli M718] Length = 70 Score = 38.8 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G G ITP ++ DV LH SA+ +T G V + + N G Sbjct: 6 TGIVKTFDGKSGKGLITP---SDGRIDVQLHVSALNLRDAEEITTGLRVEFCRI-NGLRG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PSTANV 67 >gi|288553915|ref|YP_003425850.1| hypothetical protein BpOF4_04470 [Bacillus pseudofirmus OF4] gi|288545075|gb|ADC48958.1| hypothetical protein BpOF4_04470 [Bacillus pseudofirmus OF4] Length = 95 Score = 38.8 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 11/56 (19%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 W+N +GYG+ DVF+HR +V S G VTY+ + + Sbjct: 44 WFNTARGYGYTE--------KDVFIHRDSVISG---EPRPGAAVTYELKETRKGKR 88 >gi|308187834|ref|YP_003931965.1| cold-shock protein [Pantoea vagans C9-1] gi|308058344|gb|ADO10516.1| putative cold-shock protein [Pantoea vagans C9-1] Length = 162 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-EDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K+ P S Sbjct: 54 NKG--LSAYAVKVAPTS 68 >gi|169634167|ref|YP_001707903.1| putative cold shock protein [Acinetobacter baumannii SDF] gi|169152959|emb|CAP02005.1| putative cold shock protein [Acinetobacter baumannii] Length = 97 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 10/74 (13%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQNDA 61 + G IK YN DKG+ FI+ D+F H S AS G + V + + D Sbjct: 6 YTGRIKQYNADKGFSFISTTEG-----DIFFHISDFPASEG--EPKRNEKVRF--LAADN 56 Query: 62 NGKYSAENLKLVPK 75 GK+ A ++ + Sbjct: 57 RGKFKAIKIERIDP 70 >gi|330948979|gb|EGH49239.1| cold-shock protein, DNA-binding [Pseudomonas syringae pv. pisi str. 1704B] Length = 36 Score = 38.8 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Query: 37 AVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 A+ S G +L EGQ VT+ + AE +++ Sbjct: 2 AIQSDGFKSLKEGQTVTFVAAKGQKG--MQAEEVQV 35 >gi|145542648|ref|XP_001457011.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124424825|emb|CAK89614.1| unnamed protein product [Paramecium tetraurelia] Length = 190 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43 G +K+++ +K YGFI + G D+F++ +A G+ Sbjct: 106 GFLKFFDENKNYGFIVMDS---DGSDIFVYADDLAKTGI 141 >gi|116751463|ref|YP_848150.1| cold-shock protein, DNA-binding [Syntrophobacter fumaroxidans MPOB] gi|116700527|gb|ABK19715.1| Cold-shock protein, DNA-binding [Syntrophobacter fumaroxidans MPOB] Length = 176 Score = 38.8 bits (90), Expect = 0.28, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 ++GYGF+T T G +V+ H +A+ + +L G V++ + G ++ Sbjct: 121 SEEGYGFLT----TPEGREVYFHENALLNGKFKDLAVGTPVSF-VEREGEKGSQASSV 173 >gi|255073363|ref|XP_002500356.1| predicted protein [Micromonas sp. RCC299] gi|226515619|gb|ACO61614.1| predicted protein [Micromonas sp. RCC299] Length = 736 Score = 38.8 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 14/80 (17%) Query: 5 GSIKWYNPDKGYGFITPEG-------------STESGDDVFLHRSAVASAGLFNLTEGQL 51 G + W+ P +G G I P+G + +V + R A+A G L G+ Sbjct: 190 GRVAWWKPARGVGAIVPDGVVGARNEGAGGGEEEFATKEVSVTRDALAG-GADTLAPGEG 248 Query: 52 VTYDYVQNDANGKYSAENLK 71 V +D + + + A N+ Sbjct: 249 VWFDLESSGPSDRSVAVNVT 268 >gi|186476768|ref|YP_001858238.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phymatum STM815] gi|226702629|sp|B2JDN2|PNP_BURP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|184193227|gb|ACC71192.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phymatum STM815] Length = 712 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYSAENLK 71 +G I + G D LH S +A+ + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIANERIKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKA 698 Query: 72 LVPKSSN 78 L+ +++ Sbjct: 699 LLNEAAQ 705 >gi|157145107|ref|YP_001452426.1| hypothetical protein CKO_00840 [Citrobacter koseri ATCC BAA-895] gi|157082312|gb|ABV11990.1| hypothetical protein CKO_00840 [Citrobacter koseri ATCC BAA-895] Length = 157 Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 9/68 (13%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 W+ DKG+GFI E+GD+ + H + A + + VT++ N+ SA Sbjct: 8 WF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTNNKG--LSAY 58 Query: 69 NLKLVPKS 76 +K++P+S Sbjct: 59 AVKVIPES 66 >gi|109020247|ref|XP_001090953.1| PREDICTED: protein lin-28 homolog A-like, partial [Macaca mulatta] Length = 81 Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 4/35 (11%) Query: 5 GSIKWYNPDKGYGFITPEGST----ESGDDVFLHR 35 G KW+N G+GF++ + DVF+H+ Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQ 76 >gi|290243061|ref|YP_003494731.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. K90mix] gi|288945566|gb|ADC73264.1| cold-shock DNA-binding domain protein [Thioalkalivibrio sp. K90mix] Length = 188 Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G+IKWY+ +KGYG++ +G + F A G + G V++ D G Sbjct: 2 KGTIKWYSDEKGYGYVV----DPAGKERF--FGAKHVQGTSTPSSGDSVSFKPGL-DRKG 54 Query: 64 KYSAENLKL 72 A ++++ Sbjct: 55 APIARSIQI 63 >gi|157873209|ref|XP_001685118.1| hypothetical protein [Leishmania major strain Friedlin] gi|68128189|emb|CAJ08320.1| hypothetical protein LMJF_31_1330 [Leishmania major strain Friedlin] Length = 1905 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%) Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 G + E + D+F+H S ++ G +G V + Sbjct: 819 GTLEREPAQLG--DIFVHHSCISMNGFRVFVQGTAVRFSV 856 >gi|328886068|emb|CCA59307.1| hypothetical protein SVEN_6021 [Streptomyces venezuelae ATCC 10712] Length = 68 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL-FNLTEGQLVTYDYVQNDAN 62 +G + +N GYGF+ P GS E + SA G L+EGQ V++ V D Sbjct: 6 KGFVHSFNRAGGYGFVVPLGSEEQ-----IWFSAEDIEGEDRALSEGQQVSFVLVLGD-- 58 Query: 63 GKYSAENLK 71 G++ A+ L+ Sbjct: 59 GRFEAKELR 67 >gi|294876504|ref|XP_002767689.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983] gi|239869477|gb|EER00407.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983] Length = 546 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 21/95 (22%) Query: 5 GSIKWYNPDKGYGFI----------TPEGSTESGDDVFLHRSAVASAGLF---NLTEGQL 51 G + ++ +G+GFI + + E + +F+HR +A + L NL G Sbjct: 125 GRVAKFDQARGFGFIYRSYEDSPSPSQKHHFEDDEVLFVHRKGIAGSTLDKPLNLDPGAP 184 Query: 52 VTYDYVQNDA--------NGKYSAENLKLVPKSSN 78 V Y + A ++ ++ ++ Sbjct: 185 VRYLVSSERESAAAASSTKTRDQAVDVSMLSDPTD 219 >gi|212711744|ref|ZP_03319872.1| hypothetical protein PROVALCAL_02819 [Providencia alcalifaciens DSM 30120] gi|212685846|gb|EEB45374.1| hypothetical protein PROVALCAL_02819 [Providencia alcalifaciens DSM 30120] Length = 160 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 9/68 (13%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 W+ DKG+GF+ E+GD+ + H + A + +G VT++ N+ SA Sbjct: 8 WF-EDKGFGFL----KDENGDNRYFHV--IKVANPDLIKKGAEVTFEPTTNNKG--LSAF 58 Query: 69 NLKLVPKS 76 +K++P+S Sbjct: 59 AVKVIPES 66 >gi|17646566|gb|AAL40978.1|AF447860_7 Rnr-like protein [Methylococcus capsulatus] Length = 613 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 G+GF+ P+ + D+F ++ + L V D G+ A ++++ Sbjct: 34 GFGFLHPD---DGSADLF-----ISPKDMRALIHDDRVVVSVRGIDRRGRREAAVVQVLE 85 Query: 75 KSS 77 +++ Sbjct: 86 RNT 88 >gi|53803948|ref|YP_114408.1| ribonuclease R [Methylococcus capsulatus str. Bath] gi|53757709|gb|AAU92000.1| ribonuclease R [Methylococcus capsulatus str. Bath] Length = 755 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 G+GF+ P+ + D+F ++ + L V D G+ A ++++ Sbjct: 110 GFGFLHPD---DGSADLF-----ISPKDMRALIHDDRVVVSVRGIDRRGRREAAVVQVLE 161 Query: 75 KSS 77 +++ Sbjct: 162 RNT 164 >gi|241700824|ref|XP_002411901.1| Y box binding protein, putative [Ixodes scapularis] gi|215504841|gb|EEC14335.1| Y box binding protein, putative [Ixodes scapularis] Length = 47 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 5/43 (11%) Query: 29 DDVFLHRSAVASAG----LFNLTEGQLVTYDYVQNDANGKYSA 67 +D+F+H++A+ + EG+ V +D + G+ + Sbjct: 5 EDIFVHQTAITRNHPQKLTRTVYEGETVEFDVAVGE-KGREAP 46 >gi|145480979|ref|XP_001426512.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124393587|emb|CAK59114.1| unnamed protein product [Paramecium tetraurelia] Length = 190 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL 43 G +K+++ +K YGFI + G D+F++ + G+ Sbjct: 106 GFLKFFDENKNYGFIVMDS---DGSDIFVYADDLTKTGI 141 >gi|261344628|ref|ZP_05972272.1| putative cold-shock protein [Providencia rustigianii DSM 4541] gi|282567544|gb|EFB73079.1| putative cold-shock protein [Providencia rustigianii DSM 4541] Length = 160 Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 9/68 (13%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 W+ +KG+GFI E+GD+ + H + + + + VT++ N SA Sbjct: 8 WF-EEKGFGFI----KDENGDNRYFHV--IKVSNPDLIKKDAAVTFEPTTNTKG--LSAY 58 Query: 69 NLKLVPKS 76 +K++P+S Sbjct: 59 AVKVIPES 66 >gi|283786462|ref|YP_003366327.1| cold-shock protein [Citrobacter rodentium ICC168] gi|282949916|emb|CBG89541.1| putative cold-shock protein [Citrobacter rodentium ICC168] Length = 160 Score = 38.0 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTAN 53 Query: 60 DANGKYSAENLKLVPKS 76 SA +K++P S Sbjct: 54 SKG--LSAYAVKVIPDS 68 >gi|294952847|ref|XP_002787479.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983] gi|239902481|gb|EER19275.1| protein phosphatase 2c, putative [Perkinsus marinus ATCC 50983] Length = 740 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 21/95 (22%) Query: 5 GSIKWYNPDKGYGFI----------TPEGSTESGDDVFLHRSAVASAGLF---NLTEGQL 51 G + ++ +G+GFI + + E + +F+HR +A + L NL G Sbjct: 320 GRVAKFDQARGFGFIYRSYEDSPSPSQKHHFEDDEVLFVHRKGIAGSTLDKPLNLDPGAP 379 Query: 52 VTYDYVQNDA--------NGKYSAENLKLVPKSSN 78 V Y + A ++ ++ ++ Sbjct: 380 VRYLVSSERESAAAVSSTKTRDQAVDVSMLSDPTD 414 >gi|297813029|ref|XP_002874398.1| hypothetical protein ARALYDRAFT_351768 [Arabidopsis lyrata subsp. lyrata] gi|297320235|gb|EFH50657.1| hypothetical protein ARALYDRAFT_351768 [Arabidopsis lyrata subsp. lyrata] Length = 162 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 SGDD+F+H+S ++S +L + V + ++A+ + E Sbjct: 47 SGDDLFVHQS-ISSEKFRSLAVDEAVEFKVEVDNASRLKTVEV 88 >gi|297790436|ref|XP_002863109.1| hypothetical protein ARALYDRAFT_359133 [Arabidopsis lyrata subsp. lyrata] gi|297846758|ref|XP_002891260.1| hypothetical protein ARALYDRAFT_336732 [Arabidopsis lyrata subsp. lyrata] gi|297308931|gb|EFH39368.1| hypothetical protein ARALYDRAFT_359133 [Arabidopsis lyrata subsp. lyrata] gi|297337102|gb|EFH67519.1| hypothetical protein ARALYDRAFT_336732 [Arabidopsis lyrata subsp. lyrata] Length = 162 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 SGDD+F+H+S ++S +L + V + ++A+ + E Sbjct: 47 SGDDLFVHQS-ISSEKFRSLAVDEAVEFKVEVDNASRLKTVEV 88 >gi|91202775|emb|CAJ72414.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 176 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 5/55 (9%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS 66 P++GYGFIT + G +++ H+++V + L +G V + + G + Sbjct: 121 PEEGYGFIT----SADGREIYFHKNSVLNHDFARLEKGMEVRFS-EELGEKGPQA 170 >gi|197301350|ref|ZP_03166431.1| hypothetical protein RUMLAC_00077 [Ruminococcus lactaris ATCC 29176] gi|197299507|gb|EDY34026.1| hypothetical protein RUMLAC_00077 [Ruminococcus lactaris ATCC 29176] Length = 449 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGFI + DV++ S + GL Sbjct: 90 GYGFIRSDNYLPGEQDVYVAPSQIRRFGLKT 120 >gi|145589452|ref|YP_001156049.1| ribonuclease R [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047858|gb|ABP34485.1| RNAse R [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 795 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 8/59 (13%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 G+GF+ P+ + G+D+F S + + G V + D G+ + +++V Sbjct: 24 GFGFVIPD---DGGEDIF--LSEREMS---RVMHGDRVNVRVLGTDRRGRPEGQIVEVV 74 >gi|257094012|ref|YP_003167653.1| cold-shock DNA-binding domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046536|gb|ACV35724.1| cold-shock DNA-binding domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 855 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY--DYVQNDAN 62 GS+ Y+ GYG+I P+ + +HR ++ GL L+ G V + + V Sbjct: 8 GSVDQYDDRMGYGYIKPDEPGSEEERFLVHRRSLRIPGLP-LSRGDRVIFKLEVV---PR 63 Query: 63 GKYSAEN 69 G +A+ Sbjct: 64 GLLAADV 70 >gi|159899894|ref|YP_001546141.1| transcription termination factor Rho [Herpetosiphon aurantiacus ATCC 23779] gi|159892933|gb|ABX06013.1| transcription termination factor Rho [Herpetosiphon aurantiacus ATCC 23779] Length = 416 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G+GF+ + DDV++ ++ + GL G ++ Sbjct: 62 GFGFLRSDRMLPGPDDVYVSQTQIRRFGLRT---GDRIS 97 >gi|298246241|ref|ZP_06970047.1| transcription termination factor Rho [Ktedonobacter racemifer DSM 44963] gi|297553722|gb|EFH87587.1| transcription termination factor Rho [Ktedonobacter racemifer DSM 44963] Length = 422 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G+GF+ E DV++ +S + GL G +V+ Sbjct: 61 GFGFLRQERFLPGNMDVYVSQSQIRRFGLRT---GDMVS 96 >gi|253575487|ref|ZP_04852824.1| ribonuclease R [Paenibacillus sp. oral taxon 786 str. D14] gi|251845134|gb|EES73145.1| ribonuclease R [Paenibacillus sp. oral taxon 786 str. D14] Length = 731 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 7/59 (11%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 + ++ +GF+ P+ + D+F + G +G+ V + V+ G+ +A Sbjct: 144 FQNNESFGFVIPDDKRIN-KDLF-----IPREGFGAAVDGEKVVAEIVE-YPEGRSAAV 195 >gi|150005116|ref|YP_001299860.1| cold shock protein, putative DNA-binding protein [Bacteroides vulgatus ATCC 8482] gi|254883251|ref|ZP_05255961.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294778926|ref|ZP_06744342.1| cold-shock DNA-binding domain protein [Bacteroides vulgatus PC510] gi|319642626|ref|ZP_07997272.1| cold shock protein [Bacteroides sp. 3_1_40A] gi|149933540|gb|ABR40238.1| cold shock protein, putative DNA-binding protein [Bacteroides vulgatus ATCC 8482] gi|254836044|gb|EET16353.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294447235|gb|EFG15819.1| cold-shock DNA-binding domain protein [Bacteroides vulgatus PC510] gi|317385714|gb|EFV66647.1| cold shock protein [Bacteroides sp. 3_1_40A] Length = 148 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 9/72 (12%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +VH G I+ +N KGYGF+ + E F H S + + N+ E +VT++ + Sbjct: 84 LVHEGRIEHFNVSKGYGFVKDLKNAEK---YFFHISGL----IDNIIENNIVTFELEKGS 136 Query: 61 ANGKYSAENLKL 72 +A +KL Sbjct: 137 RG--MNAVKIKL 146 >gi|297788951|ref|XP_002862499.1| hypothetical protein ARALYDRAFT_359579 [Arabidopsis lyrata subsp. lyrata] gi|297308054|gb|EFH38757.1| hypothetical protein ARALYDRAFT_359579 [Arabidopsis lyrata subsp. lyrata] Length = 162 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 SGDD+F+H+S ++S +LT + V + ++A+ + E Sbjct: 47 SGDDLFVHQS-ISSEKFRSLTVDEAVEFKVEVDNASRLKTVEV 88 >gi|297815126|ref|XP_002875446.1| hypothetical protein ARALYDRAFT_347204 [Arabidopsis lyrata subsp. lyrata] gi|297321284|gb|EFH51705.1| hypothetical protein ARALYDRAFT_347204 [Arabidopsis lyrata subsp. lyrata] Length = 162 Score = 37.6 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 SGDD+F+H+S ++S +L + V + ++A+ + E Sbjct: 47 SGDDLFVHQS-ISSEKFRSLAVDEAVEFKVEVDNASRLKTVEV 88 >gi|293392427|ref|ZP_06636749.1| cold-shock DNA-binding domain protein [Serratia odorifera DSM 4582] gi|291425081|gb|EFE98288.1| cold-shock DNA-binding domain protein [Serratia odorifera DSM 4582] Length = 163 Score = 37.6 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 8/76 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M G I + DKG+GFIT E+G++ + H V + L + + VT++ N+ Sbjct: 3 MTMNGKITTFFEDKGFGFIT----DENGENRYFHVIKVQNPEL--IKKNAAVTFEPT-NN 55 Query: 61 ANGKYSAENLKLVPKS 76 A G SA +K++ S Sbjct: 56 AKGP-SAFAVKVLAPS 70 >gi|297838765|ref|XP_002887264.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297333105|gb|EFH63523.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 153 Score = 37.6 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 SGDD+F+H+S ++S +LT + V + ++A+ + E Sbjct: 47 SGDDLFVHQS-ISSEKFRSLTVDEAVEFKVEVDNASRLKTVEV 88 >gi|327540621|gb|EGF27195.1| cold shock protein scoF [Rhodopirellula baltica WH47] Length = 41 Score = 37.6 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 F H S+V +L EGQ VT++ + + AEN+++ Sbjct: 2 FFHSSSVEGVNFDDLREGQQVTFNEARGEKG--PCAENVQV 40 >gi|288941319|ref|YP_003443559.1| ribonuclease R [Allochromatium vinosum DSM 180] gi|288896691|gb|ADC62527.1| ribonuclease R [Allochromatium vinosum DSM 180] Length = 806 Score = 37.6 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 8/63 (12%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 G+GF+ P+ E GDD++ + + L G V D G+ ++++ Sbjct: 105 GFGFVRPD---EGGDDLY-----LYPKEMRALFHGDRVVVRVAGRDRRGRLEGAVVEILE 156 Query: 75 KSS 77 +++ Sbjct: 157 RNT 159 >gi|212694509|ref|ZP_03302637.1| hypothetical protein BACDOR_04037 [Bacteroides dorei DSM 17855] gi|237711155|ref|ZP_04541636.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237727519|ref|ZP_04558000.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265750744|ref|ZP_06086807.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212663010|gb|EEB23584.1| hypothetical protein BACDOR_04037 [Bacteroides dorei DSM 17855] gi|229434375|gb|EEO44452.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229454999|gb|EEO60720.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263237640|gb|EEZ23090.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 148 Score = 37.6 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 9/72 (12%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +VH G I+ +N KGYGF+ + E F H S + + N+ E +VT++ + Sbjct: 84 LVHEGRIEHFNVSKGYGFVKDLKNAEK---YFFHISGL----IDNIIENNIVTFELEKGS 136 Query: 61 ANGKYSAENLKL 72 +A +KL Sbjct: 137 RG--MNAVKIKL 146 >gi|153955985|ref|YP_001396750.1| ribonuclease R [Clostridium kluyveri DSM 555] gi|219856326|ref|YP_002473448.1| hypothetical protein CKR_2983 [Clostridium kluyveri NBRC 12016] gi|146348843|gb|EDK35379.1| Rnr [Clostridium kluyveri DSM 555] gi|219570050|dbj|BAH08034.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 709 Score = 37.6 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV-QNDANGKYSAENLK 71 KGYGF+ P + G D+F+ SA+ A G V Q + K E ++ Sbjct: 76 QKGYGFVIP---YDEGKDIFVPSSALNGA-----MNGDRVVVKITKQANTEKKCEGEIIR 127 Query: 72 LVPKSSN 78 ++ ++++ Sbjct: 128 VLERANS 134 >gi|260072563|gb|ACX30463.1| hypothetical protein SUP05_FGYC13F180027 [uncultured SUP05 cluster bacterium] Length = 107 Score = 37.6 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 9/69 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G + + KGYGFIT + G+ F+H+ + + L V ++ +D Sbjct: 6 KGIVAQF-GTKGYGFITGD----DGEKYFVHQKNIYNK--ARLKADTRVVFNAENSDKG- 57 Query: 64 KYSAENLKL 72 A ++KL Sbjct: 58 -LVAVDVKL 65 >gi|291563702|emb|CBL42518.1| RNAse R [butyrate-producing bacterium SS3/4] Length = 776 Score = 37.6 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 8/65 (12%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 +G+GF+T EG + D+F + + +G V +N G+ A LK++ Sbjct: 82 RGFGFVTIEGRED---DLF-----IPPDDTGDAMDGDTVQVVINENGRGGRTEARVLKVL 133 Query: 74 PKSSN 78 ++ Sbjct: 134 KHANE 138 >gi|297800356|ref|XP_002868062.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297838153|ref|XP_002886958.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297845442|ref|XP_002890602.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313898|gb|EFH44321.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332799|gb|EFH63217.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336444|gb|EFH66861.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 142 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 SGDD+F+H+S ++S +LT + V + ++A+ + E Sbjct: 47 SGDDLFVHQS-ISSEKFRSLTVDEAVEFKVEVDNASRLKTVEV 88 >gi|291550089|emb|CBL26351.1| transcription termination factor Rho [Ruminococcus torques L2-14] Length = 446 Score = 37.6 bits (87), Expect = 0.57, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGFI + DV++ S + GL Sbjct: 87 GYGFIRSDNYLPGDGDVYVAPSQIRRFGLKT 117 >gi|281336058|gb|ADA62607.1| hypothetical protein SAP024A_042 [Staphylococcus epidermidis] gi|319400536|gb|EFV88768.1| hypothetical protein GSEF_1339 [Staphylococcus epidermidis FRI909] Length = 43 Score = 37.6 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 12/24 (50%) Query: 39 ASAGLFNLTEGQLVTYDYVQNDAN 62 A G +L EGQ V +D V+ Sbjct: 20 AGEGYKSLEEGQNVDFDIVEGQRG 43 >gi|328953610|ref|YP_004370944.1| Cold-shock protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328453934|gb|AEB09763.1| Cold-shock protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 1568 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVAS----AGLFNLTEGQL--VTYDYV 57 +G I + D+ YGF+ GDD F HRSA+ + L G+ V +D Sbjct: 363 QGYIYNFKRDRNYGFLE----GIDGDDYFFHRSAILDNELLDKVLYLNPGERIPVIFDVA 418 Query: 58 QNDANG 63 Q Sbjct: 419 QGIKGP 424 >gi|297834998|ref|XP_002885381.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331221|gb|EFH61640.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 132 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 SGDD+F+H+S + S +L + V + ++A Sbjct: 15 SGDDLFVHQS-IRSEKFRSLAVDESVEFKVEVDNA 48 >gi|297836626|ref|XP_002886195.1| hypothetical protein ARALYDRAFT_900266 [Arabidopsis lyrata subsp. lyrata] gi|297332035|gb|EFH62454.1| hypothetical protein ARALYDRAFT_900266 [Arabidopsis lyrata subsp. lyrata] Length = 97 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 SGDD+F+H+S ++S +L + V + ++A+ + E Sbjct: 47 SGDDLFVHQS-ISSEKFRSLAVDEAVEFKVEVDNASRLKTVEV 88 >gi|288550026|ref|ZP_05969023.2| putative cold-shock protein [Enterobacter cancerogenus ATCC 35316] gi|288316460|gb|EFC55398.1| putative cold-shock protein [Enterobacter cancerogenus ATCC 35316] Length = 178 Score = 37.6 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 9/68 (13%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 W+ DKG+GFI E+GD+ + H + A + + VT++ N+ SA Sbjct: 29 WF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTNNKG--LSAY 79 Query: 69 NLKLVPKS 76 +K++P+S Sbjct: 80 AVKVIPES 87 >gi|269926445|ref|YP_003323068.1| transcription termination factor Rho [Thermobaculum terrenum ATCC BAA-798] gi|269790105|gb|ACZ42246.1| transcription termination factor Rho [Thermobaculum terrenum ATCC BAA-798] Length = 642 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G+GF+ E S DDV++ +S + GL G V Sbjct: 288 GFGFLRQERYLPSPDDVYVSQSQIRRFGLRT---GDHV 322 >gi|156972839|ref|YP_001443746.1| cold shock proteins [Vibrio harveyi ATCC BAA-1116] gi|156524433|gb|ABU69519.1| hypothetical protein VIBHAR_00516 [Vibrio harveyi ATCC BAA-1116] Length = 45 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 H ++ S L+E Q V++ Q + Y A N+KL Sbjct: 8 HFKSIVSECFKKLSEFQKVSFVVEQGNKG--YQAGNVKL 44 >gi|238059964|ref|ZP_04604673.1| hypothetical protein MCAG_00930 [Micromonospora sp. ATCC 39149] gi|237881775|gb|EEP70603.1| hypothetical protein MCAG_00930 [Micromonospora sp. ATCC 39149] Length = 116 Score = 37.6 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G ++ ++ D+G+G I ++H SA+A G +L GQ V Sbjct: 12 GVVREFHVDEGWGVIDGPAVPGG---CWVHFSAIAMGGFRHLAAGQFV 56 >gi|255030537|ref|ZP_05302488.1| hypothetical protein LmonL_18126 [Listeria monocytogenes LO28] Length = 40 Score = 37.6 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 5/13 (38%), Positives = 11/13 (84%) Query: 2 VHRGSIKWYNPDK 14 + +G++KW+N +K Sbjct: 1 MEQGTVKWFNAEK 13 >gi|326563498|gb|EGE13761.1| ribonuclease R [Moraxella catarrhalis 103P14B1] gi|326573807|gb|EGE23764.1| ribonuclease R [Moraxella catarrhalis 101P30B1] Length = 770 Score = 37.2 bits (86), Expect = 0.66, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 11/64 (17%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 KG+GF+ + D+FLH + + +G V + V + GK A ++++ Sbjct: 106 KGFGFVI----LDDMPDLFLHEKQ-----MRLVFDGDTV--EAVATEYRGKTEARIIQVI 154 Query: 74 PKSS 77 +S Sbjct: 155 KQSQ 158 >gi|296113667|ref|YP_003627605.1| ribonuclease R [Moraxella catarrhalis RH4] gi|295921361|gb|ADG61712.1| ribonuclease R [Moraxella catarrhalis RH4] gi|326562411|gb|EGE12730.1| ribonuclease R [Moraxella catarrhalis 7169] gi|326562780|gb|EGE13075.1| ribonuclease R [Moraxella catarrhalis 46P47B1] gi|326563184|gb|EGE13452.1| ribonuclease R [Moraxella catarrhalis 12P80B1] gi|326569119|gb|EGE19181.1| ribonuclease R [Moraxella catarrhalis BC1] gi|326570605|gb|EGE20641.1| ribonuclease R [Moraxella catarrhalis BC7] gi|326571312|gb|EGE21329.1| ribonuclease R [Moraxella catarrhalis BC8] gi|326572993|gb|EGE22972.1| ribonuclease R [Moraxella catarrhalis CO72] gi|326574769|gb|EGE24703.1| ribonuclease R [Moraxella catarrhalis O35E] Length = 770 Score = 37.2 bits (86), Expect = 0.66, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 11/64 (17%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 KG+GF+ + D+FLH + + +G V + V + GK A ++++ Sbjct: 106 KGFGFVI----LDDMPDLFLHEKQ-----MRLVFDGDTV--EAVATEYRGKTEARIIQVI 154 Query: 74 PKSS 77 +S Sbjct: 155 KQSQ 158 >gi|297844054|ref|XP_002889908.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335750|gb|EFH66167.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 120 Score = 37.2 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 SGDD+F+H+S ++S +LT + V + ++A+ + E Sbjct: 26 SGDDLFVHQS-ISSEKFRSLTVDEAVEFKVEVDNASRLKTVEV 67 >gi|313895876|ref|ZP_07829430.1| ribonuclease R [Selenomonas sp. oral taxon 137 str. F0430] gi|312975301|gb|EFR40762.1| ribonuclease R [Selenomonas sp. oral taxon 137 str. F0430] Length = 907 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Query: 14 KGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 KG+GFI P+ TE DVF+ SA+A+A G V ++ G+ Sbjct: 83 KGFGFIIPDVRDTEEETDVFVPGSALATA-----MHGDRVVARVTPSEQPGR 129 >gi|257461355|ref|ZP_05626451.1| cold-shock DNA-binding domain protein [Campylobacter gracilis RM3268] gi|257441078|gb|EEV16225.1| cold-shock DNA-binding domain protein [Campylobacter gracilis RM3268] Length = 260 Score = 37.2 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 GS+K + DKG+GFIT + G + F H++ + +A + + G V + Sbjct: 7 GSVKKFFLDKGFGFIT----DDDGVEYFFHKNDILNAKIAS---GDFVLF 49 >gi|255072331|ref|XP_002499840.1| cold-shock protein [Micromonas sp. RCC299] gi|226515102|gb|ACO61098.1| cold-shock protein [Micromonas sp. RCC299] Length = 1007 Score = 37.2 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Query: 16 YGFITPEGSTESGDDVFLHRSAV-ASAGLFNLTEGQLVTYDYVQ-------NDANGKYSA 67 +GF+ + +G D+F H S V G+ +L V + + D +GK +A Sbjct: 177 FGFVR--TLSRNGPDLFFHASEVLERNGIDDLRVNDEVKFVVREAVPGAGPRDKDGKANA 234 Query: 68 ENLKLVPKS 76 ++ + + Sbjct: 235 LMVQRLSEE 243 >gi|322420009|ref|YP_004199232.1| ribonuclease R [Geobacter sp. M18] gi|320126396|gb|ADW13956.1| ribonuclease R [Geobacter sp. M18] Length = 737 Score = 37.2 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 14/64 (21%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE---GQLVTYDYVQNDANGKYSAENLK 71 GYGF+ PE + G+D+F+ L+E G +V V +GK Sbjct: 77 GYGFVMPE---DGGEDLFVPA--------RYLSEYMNGDVVEAQVVSTRRDGKREGRVTT 125 Query: 72 LVPK 75 L+ + Sbjct: 126 LIKR 129 >gi|294886195|ref|XP_002771604.1| protein phosphatase 2C ABI2, putative [Perkinsus marinus ATCC 50983] gi|239875310|gb|EER03420.1| protein phosphatase 2C ABI2, putative [Perkinsus marinus ATCC 50983] Length = 624 Score = 37.2 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 16/83 (19%) Query: 4 RGSIKWYNPDKGYGFITPEGS-------------TESGDDV-FLHRSAVASAGLFNLTEG 49 +G IK+Y+P + +G+IT GS + S DD+ F R + + + L G Sbjct: 136 KGRIKFYSPQRHFGYITVVGSPEGAEENEEDEDTSASQDDLYFNRRDLLDANEIEKLDTG 195 Query: 50 QLVTYDYVQNDANGKYSAENLKL 72 VT+D ++ NG++SA N+K+ Sbjct: 196 MPVTFDIAED--NGQFSAVNVKV 216 >gi|301758422|ref|XP_002915057.1| PREDICTED: LOW QUALITY PROTEIN: protein lin-28 homolog A-like [Ailuropoda melanoleuca] Length = 346 Score = 37.2 bits (86), Expect = 0.72, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 5 GSIKWYNPDKGYGFITPEGSTES-------GDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 G+ KW++ +G F + +V ++ S + G ++L EG+ V + + Sbjct: 104 GNCKWFSACRGLAFPSRTARRAGVALDLDPSMEVSVYGSQLHVGGFWSLKEGEAVQFTFK 163 Query: 58 QNDAN 62 ++ Sbjct: 164 KSAKG 168 >gi|20807463|ref|NP_622634.1| exoribonuclease [Thermoanaerobacter tengcongensis MB4] gi|20515989|gb|AAM24238.1| Exoribonucleases [Thermoanaerobacter tengcongensis MB4] Length = 708 Score = 37.2 bits (86), Expect = 0.72, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 7/63 (11%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 +GYGF+ PE + D+F+ S + A +G LV ++ E +K++ Sbjct: 77 RGYGFLIPE--EQGIKDIFIPISGMNGA-----MDGDLVLVRVIEGAEGKSQEGEVVKIL 129 Query: 74 PKS 76 ++ Sbjct: 130 KRA 132 >gi|226364925|ref|YP_002782707.1| hypothetical protein ROP_55150 [Rhodococcus opacus B4] gi|226243414|dbj|BAH53762.1| hypothetical protein [Rhodococcus opacus B4] Length = 192 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD---YVQNDANGKY-SA 67 ++G+G I + + H S V G +LT G VT++ V +G + A Sbjct: 129 DEEGWGVIDSDATPGGAWS---HFSLVEGPGYRSLTPGHEVTFEPETMVGGTQDGYHYRA 185 Query: 68 ENLKLVP 74 +++ V Sbjct: 186 LDVRKVE 192 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 M G ++ ++ + +G I + + +F H +VA G L EGQ V ++ Sbjct: 1 MATIGVVRSWSIEAMWGVIDSDETPGGCWTLF-H--SVAVEGFPALREGQQVEFE 52 >gi|320530928|ref|ZP_08031961.1| ribonuclease R [Selenomonas artemidis F0399] gi|320136793|gb|EFW28742.1| ribonuclease R [Selenomonas artemidis F0399] Length = 907 Score = 37.2 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Query: 14 KGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 KG+GFI P+ TE DVF+ SA+A+A G V ++ G+ Sbjct: 83 KGFGFIIPDVRDTEEETDVFVPGSALATA-----MHGDRVVARVTPSEQPGR 129 >gi|332982435|ref|YP_004463876.1| RNAse R [Mahella australiensis 50-1 BON] gi|332700113|gb|AEE97054.1| RNAse R [Mahella australiensis 50-1 BON] Length = 706 Score = 37.2 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 17/56 (30%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVAS--------------AGLFNLTEGQLVT 53 KG+GFI P+ ++ DV++ + G + EGQ+V Sbjct: 75 NAKGFGFIIPDDGSQ--KDVYVSADDINGAMNGDRVMAKILFSDGDRS-REGQIVQ 127 >gi|283834334|ref|ZP_06354075.1| putative cold-shock protein [Citrobacter youngae ATCC 29220] gi|291069867|gb|EFE07976.1| putative cold-shock protein [Citrobacter youngae ATCC 29220] Length = 158 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 W+ DKG+GFI E+GD+ + H + A + + VT++ N+ SA Sbjct: 8 WF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTNNKG--LSAY 58 Query: 69 NLKLVPKS 76 +K++P S Sbjct: 59 AVKVIPDS 66 >gi|253700249|ref|YP_003021438.1| ribonuclease R [Geobacter sp. M21] gi|251775099|gb|ACT17680.1| ribonuclease R [Geobacter sp. M21] Length = 737 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 14/62 (22%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE---GQLVTYDYVQNDANGKYSAENLK 71 GYGF+ PE E G+D+F+ LTE G V V +GK Sbjct: 77 GYGFVMPE---EGGEDLFVPA--------RYLTEYMHGDTVEAQVVSTRRDGKREGRVTA 125 Query: 72 LV 73 LV Sbjct: 126 LV 127 >gi|300779139|ref|ZP_07088997.1| competence factor transporter ComB [Chryseobacterium gleum ATCC 35910] gi|300504649|gb|EFK35789.1| competence factor transporter ComB [Chryseobacterium gleum ATCC 35910] Length = 142 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 G + + +KGYGFIT + S E+ +F H + + +G V+++ ++ Sbjct: 80 RKTGIVT-FLSEKGYGFITEDNSKEN---IFFH----NNNCAEPVKKGNKVSFEKEKSPK 131 Query: 62 NGKYSAENLKLVP 74 +SA ++LV Sbjct: 132 G--FSAVEIQLVK 142 >gi|269468003|gb|EEZ79731.1| hypothetical protein Sup05_0432 [uncultured SUP05 cluster bacterium] Length = 107 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 9/69 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G + + KGYGFIT + G+ F+H+ + + L V ++ +D Sbjct: 6 KGIVAQF-GTKGYGFITGD----DGEKYFVHQKNIYNK--ARLKADTRVVFNAENSDKG- 57 Query: 64 KYSAENLKL 72 A ++KL Sbjct: 58 -LVAVDVKL 65 >gi|254486969|ref|ZP_05100174.1| cold-shock DNA-binding domain protein [Roseobacter sp. GAI101] gi|214043838|gb|EEB84476.1| cold-shock DNA-binding domain protein [Roseobacter sp. GAI101] Length = 192 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 23/50 (46%) Query: 24 STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 ST G V+ HR++V G +L EG V DA+ A ++ + Sbjct: 133 STTDGRLVYFHRNSVVRNGYDDLNEGDTVELSVDAKDADEGPHASIVRPI 182 >gi|300717273|ref|YP_003742076.1| cold-shock protein [Erwinia billingiae Eb661] gi|299063109|emb|CAX60229.1| Putative cold-shock protein [Erwinia billingiae Eb661] Length = 160 Score = 37.2 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H V A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGDNRYFH--EVKVANPDLIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 SA +K+ P+S Sbjct: 54 SKG--LSAYAVKVAPES 68 >gi|237745437|ref|ZP_04575917.1| exoribonuclease RNAse R [Oxalobacter formigenes HOxBLS] gi|229376788|gb|EEO26879.1| exoribonuclease RNAse R [Oxalobacter formigenes HOxBLS] Length = 794 Score = 37.2 bits (86), Expect = 0.85, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 8/63 (12%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 GYGF+ + + G+D+F ++ + + V V D G+ + +V Sbjct: 84 GYGFVIRD---DGGEDIF-----LSENEMQKVMHNDRVQVRIVHTDRKGRPEGIIVSVVS 135 Query: 75 KSS 77 ++ Sbjct: 136 RAH 138 >gi|291285773|ref|YP_003502591.1| Cold shock-like protein cspF [Escherichia coli O55:H7 str. CB9615] gi|331666059|ref|ZP_08366953.1| conserved domain protein [Escherichia coli TA143] gi|290765646|gb|ADD59607.1| Cold shock-like protein cspF [Escherichia coli O55:H7 str. CB9615] gi|331057110|gb|EGI29104.1| conserved domain protein [Escherichia coli TA143] Length = 70 Score = 36.9 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 G +K ++ G G ITP ++ DV LH SA+ +T G V + + N G Sbjct: 6 TGILKTFDGKSGKGLITP---SDGRIDVQLHVSALNLRDAEEITTGLRVEFCRI-NGLRG 61 Query: 64 KYSAEN 69 +A Sbjct: 62 PSAANV 67 >gi|302384866|ref|YP_003820688.1| transcription termination factor Rho [Clostridium saccharolyticum WM1] gi|302195494|gb|ADL03065.1| transcription termination factor Rho [Clostridium saccharolyticum WM1] Length = 538 Score = 36.9 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 G+GFI E +DV++ S + + G D + K +AE Sbjct: 177 GFGFIRCENYLPGENDVYVAPSQIRRFNMKT---G-----DIIHGSRRVKTAAE 222 >gi|109080056|ref|XP_001098123.1| PREDICTED: cold shock domain-containing protein E1-like [Macaca mulatta] Length = 133 Score = 36.9 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +GFI E +F H + V GL L G V + + GK + N+ Sbjct: 20 FGFINYEVG--DSKKLFFHVNEVE-DGLE-LQAGDEVEFSVTLHQRTGKCNTWNV 70 >gi|254282033|ref|ZP_04957001.1| ribonuclease R [gamma proteobacterium NOR51-B] gi|219678236|gb|EED34585.1| ribonuclease R [gamma proteobacterium NOR51-B] Length = 827 Score = 36.9 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 GYGF PE E GDD+FL+ + + +G V + D G+ + ++++ Sbjct: 122 GYGFAKPE---EGGDDLFLNNRQMQR-----VFDGDKVLAAIIGQDRRGRPEGQIVEVLE 173 Query: 75 KSS 77 ++ Sbjct: 174 RAH 176 >gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide adenylyltransferase [Burkholderia rhizoxinica HKI 454] gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) / Polynucleotide adenylyltransferase (EC 2.7.7.19) [Burkholderia rhizoxinica HKI 454] Length = 768 Score = 36.9 bits (85), Expect = 0.98, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S +A+ + + L EGQ V +Q D G+ Sbjct: 695 GRDGLLHISEIANERIKDINDYLKEGQQVKVKVIQTDEKGR 735 >gi|83646130|ref|YP_434565.1| hypothetical protein HCH_03390 [Hahella chejuensis KCTC 2396] gi|83634173|gb|ABC30140.1| uncharacterized conserved protein [Hahella chejuensis KCTC 2396] Length = 303 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 11/76 (14%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAG--------LFNL-TEGQLVTYDYVQNDAN 62 DKG+GF+T + + D+F H S V +G + + G + ++ ++ Sbjct: 212 EDKGFGFLTVKEESGKTSDLFFHVSHVRFSGGTRPTNSEMTTIAKSGCQLEFERGISEKG 271 Query: 63 GKYSAENLKLVPKSSN 78 K A +K++P S+ Sbjct: 272 NKTCA--VKIIPVSAE 285 >gi|241623490|ref|XP_002409126.1| conserved hypothetical protein [Ixodes scapularis] gi|215503120|gb|EEC12614.1| conserved hypothetical protein [Ixodes scapularis] Length = 348 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 7/62 (11%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 +GFI + ++F H S +L+ G+ V + NGK A + +P Sbjct: 137 FGFIER---ADIVKEIFFHSS--ECRDFRSLSLGEDVEFSV--QLRNGKEVACGIVRLPT 189 Query: 76 SS 77 + Sbjct: 190 GT 191 Score = 33.8 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 16/32 (50%) Query: 45 NLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76 +L G V + + +G A N++LV +S Sbjct: 254 SLQVGDRVQFCIATDRRDGLQRATNIELVDQS 285 >gi|134296437|ref|YP_001120172.1| polynucleotide phosphorylase/polyadenylase [Burkholderia vietnamiensis G4] gi|187470949|sp|A4JGD4|PNP_BURVG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|134139594|gb|ABO55337.1| 3' exoribonuclease [Burkholderia vietnamiensis G4] Length = 715 Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|167585967|ref|ZP_02378355.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ubonensis Bu] Length = 715 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|167562173|ref|ZP_02355089.1| polynucleotide phosphorylase/polyadenylase [Burkholderia oklahomensis EO147] gi|167569418|ref|ZP_02362292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia oklahomensis C6786] Length = 714 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|34496921|ref|NP_901136.1| polynucleotide phosphorylase/polyadenylase [Chromobacterium violaceum ATCC 12472] gi|81656248|sp|Q7NY10|PNP_CHRVO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|34102777|gb|AAQ59141.1| polyribonucleotide nucleotidyltransferase [Chromobacterium violaceum ATCC 12472] Length = 722 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 G D +H S +A+ + N L EGQ+V ++ D G+ L+ + + Sbjct: 654 GKDGLVHISQIANERIKNVSDYLKEGQVVKVKAIEMDDRGRIRLSIKALLEEEAK 708 >gi|171316299|ref|ZP_02905520.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria MEX-5] gi|171098525|gb|EDT43326.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria MEX-5] Length = 714 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|167836045|ref|ZP_02462928.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis MSMB43] Length = 706 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 635 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 684 >gi|291520556|emb|CBK75777.1| transcription termination factor Rho [Butyrivibrio fibrisolvens 16/4] Length = 494 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 G+GFI + DDV++ +S + L Sbjct: 134 GFGFIRCDNYMPGTDDVYVSQSQIKKFNLKT 164 >gi|239930682|ref|ZP_04687635.1| hypothetical protein SghaA1_20843 [Streptomyces ghanaensis ATCC 14672] gi|291439044|ref|ZP_06578434.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291341939|gb|EFE68895.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 74 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 + +++ ++ ++G+G + T G + H S + G L+ GQ V Sbjct: 1 MVTATVREWHDEEGWG-VLDSPETPGG--CWAHFSHIQVKGFRTLSPGQQV 48 >gi|197107117|pdb|2K5N|A Chain A, Solution Nmr Structure Of The N-Terminal Domain Of Protein Eca1580 From Erwinia Carotovora, Northeast Structural Genomics Consortium Target Ewr156a Length = 74 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%) Query: 1 MVHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQN 59 M G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 1 MAMNGTITTWF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTN 53 Query: 60 DANGKYSAENLKLVPKS 76 + SA +K+VP Sbjct: 54 NKG--LSAYAVKVVPLE 68 >gi|254298529|ref|ZP_04965981.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 406e] gi|157808347|gb|EDO85517.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 406e] Length = 713 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|53725829|ref|YP_103438.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei ATCC 23344] gi|67642196|ref|ZP_00440956.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Burkholderia mallei GB8 horse 4] gi|121601052|ref|YP_992465.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei SAVP1] gi|124384993|ref|YP_001026732.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei NCTC 10229] gi|126449416|ref|YP_001079983.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei NCTC 10247] gi|167000372|ref|ZP_02266190.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei PRL-20] gi|254175718|ref|ZP_04882378.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC 10399] gi|254202114|ref|ZP_04908477.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH] gi|254207444|ref|ZP_04913794.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU] gi|254359866|ref|ZP_04976136.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei 2002721280] gi|81604650|sp|Q62IN1|PNP_BURMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470944|sp|A3MI97|PNP_BURM7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470945|sp|A2S463|PNP_BURM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470946|sp|A1V2L2|PNP_BURMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52429252|gb|AAU49845.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC 23344] gi|121229862|gb|ABM52380.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei SAVP1] gi|124293013|gb|ABN02282.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC 10229] gi|126242286|gb|ABO05379.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC 10247] gi|147746361|gb|EDK53438.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH] gi|147751338|gb|EDK58405.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU] gi|148029106|gb|EDK87011.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei 2002721280] gi|160696762|gb|EDP86732.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC 10399] gi|238523292|gb|EEP86731.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Burkholderia mallei GB8 horse 4] gi|243063706|gb|EES45892.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei PRL-20] Length = 713 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|254411566|ref|ZP_05025342.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC 7420] gi|196181288|gb|EDX76276.1| conserved hypothetical protein [Microcoleus chthonoplastes PCC 7420] Length = 215 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%) Query: 3 HRG--SIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 H+G ++ W ++G+GFI P+ ++ VFLH + + + G ++ Y Sbjct: 6 HKGQLTV-W-KDEEGFGFIKPDHGDQN---VFLHITGLKNPNRR-PQVGDIIRYQLTIG- 58 Query: 61 ANGKYSA 67 GK A Sbjct: 59 KKGKLRA 65 >gi|53718843|ref|YP_107829.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei K96243] gi|76810240|ref|YP_332840.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 1710b] gi|126439036|ref|YP_001058334.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 668] gi|126454918|ref|YP_001065573.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 1106a] gi|134283923|ref|ZP_01770619.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 305] gi|167718839|ref|ZP_02402075.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei DM98] gi|167737848|ref|ZP_02410622.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 14] gi|167815032|ref|ZP_02446712.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 91] gi|167823448|ref|ZP_02454919.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 9] gi|167845000|ref|ZP_02470508.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei B7210] gi|167893541|ref|ZP_02480943.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 7894] gi|167901988|ref|ZP_02489193.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei NCTC 13177] gi|167910223|ref|ZP_02497314.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 112] gi|167918256|ref|ZP_02505347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei BCC215] gi|217419798|ref|ZP_03451304.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 576] gi|226195372|ref|ZP_03790961.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9] gi|237811578|ref|YP_002896029.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei MSHR346] gi|242315054|ref|ZP_04814070.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1106b] gi|254190554|ref|ZP_04897061.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|254258157|ref|ZP_04949211.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1710a] gi|81380050|sp|Q63VN7|PNP_BURPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123599745|sp|Q3JUB3|PNP_BURP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470947|sp|A3NTA2|PNP_BURP0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470948|sp|A3N7L3|PNP_BURP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52209257|emb|CAH35202.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei K96243] gi|76579693|gb|ABA49168.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1710b] gi|126218529|gb|ABN82035.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 668] gi|126228560|gb|ABN92100.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1106a] gi|134244712|gb|EBA44810.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 305] gi|157938229|gb|EDO93899.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|217397102|gb|EEC37118.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 576] gi|225932574|gb|EEH28572.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9] gi|237503430|gb|ACQ95748.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei MSHR346] gi|242138293|gb|EES24695.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1106b] gi|254216846|gb|EET06230.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1710a] Length = 713 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|261414726|ref|YP_003248409.1| guanine-specific ribonuclease N1 and T1 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371182|gb|ACX73927.1| guanine-specific ribonuclease N1 and T1 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 249 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 5/36 (13%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV 38 ++ ++ +N +KG+GF +T +G F+H SA+ Sbjct: 5 NKATVTQWNEEKGFGF-----ATANGTKYFVHISAL 35 >gi|237730314|ref|ZP_04560795.1| cold shock protein E [Citrobacter sp. 30_2] gi|226905853|gb|EEH91771.1| cold shock protein E [Citrobacter sp. 30_2] Length = 158 Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 W+ DKG+GFI E+GD+ + H + A + + VT++ N+ SA Sbjct: 8 WF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTNNKG--LSAY 58 Query: 69 NLKLVPKS 76 +K++P S Sbjct: 59 AVKVIPDS 66 >gi|224825869|ref|ZP_03698973.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum 2002] gi|224602093|gb|EEG08272.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum 2002] Length = 719 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D +H S +A+ + N L EGQ+V ++ D G+ Sbjct: 650 GKDGLVHISQIANERIKNVSDYLKEGQVVKVKAIEMDDRGR 690 >gi|170698105|ref|ZP_02889185.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria IOP40-10] gi|170136963|gb|EDT05211.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria IOP40-10] Length = 714 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|254251858|ref|ZP_04945176.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa AUO158] gi|124894467|gb|EAY68347.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa AUO158] Length = 722 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 650 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 699 >gi|325524616|gb|EGD02631.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49] Length = 713 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 640 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 689 >gi|296103463|ref|YP_003613609.1| cold-shock DNA-binding domain protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057922|gb|ADF62660.1| cold-shock DNA-binding domain protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 157 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 9/68 (13%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 W+ DKG+GFI E+GD+ + H + A + + VT++ N+ SA Sbjct: 8 WF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTNNKG--LSAY 58 Query: 69 NLKLVPKS 76 +K++P+S Sbjct: 59 AVKVIPES 66 >gi|254195065|ref|ZP_04901494.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei S13] gi|169651813|gb|EDS84506.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei S13] Length = 713 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|254247654|ref|ZP_04940975.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia cenocepacia PC184] gi|124872430|gb|EAY64146.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia cenocepacia PC184] Length = 730 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 657 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 706 >gi|78067050|ref|YP_369819.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. 383] gi|123742554|sp|Q39EE1|PNP_BURS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77967795|gb|ABB09175.1| 3' exoribonuclease [Burkholderia sp. 383] Length = 715 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|254181191|ref|ZP_04887788.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1655] gi|184211729|gb|EDU08772.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1655] Length = 713 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|258544720|ref|ZP_05704954.1| cold-shock DNA-binding domain protein [Cardiobacterium hominis ATCC 15826] gi|258520039|gb|EEV88898.1| cold-shock DNA-binding domain protein [Cardiobacterium hominis ATCC 15826] Length = 226 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 ++G I +N +KGYGFI E+ +F H S A VT V Sbjct: 22 YQGRIINWNDEKGYGFIQLMPGHEN---LFFHISTFAYH-HRRPAADTAVTVLAVPGQKG 77 Query: 63 GKYSAENL 70 G ++ L Sbjct: 78 GWQASRVL 85 >gi|167618527|ref|ZP_02387158.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis Bt4] Length = 713 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|83718859|ref|YP_441610.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis E264] gi|167580418|ref|ZP_02373292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis TXDOH] gi|257139694|ref|ZP_05587956.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis E264] gi|123726649|sp|Q2SZN9|PNP_BURTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|83652684|gb|ABC36747.1| polyribonucleotide nucleotidyltransferase [Burkholderia thailandensis E264] Length = 713 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|115352342|ref|YP_774181.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria AMMD] gi|172061213|ref|YP_001808865.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria MC40-6] gi|122322637|sp|Q0BDC6|PNP_BURCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702626|sp|B1YTR1|PNP_BURA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115282330|gb|ABI87847.1| 3' exoribonuclease [Burkholderia ambifaria AMMD] gi|171993730|gb|ACB64649.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria MC40-6] Length = 714 Score = 36.5 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I + G D LH S + + + + L EGQ V +Q D G+ Sbjct: 642 FGAIV---NLLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|150015522|ref|YP_001307776.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052] gi|149901987|gb|ABR32820.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052] Length = 755 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 8/66 (12%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-GKYSAENLK 71 KG+GF+ PE E DVF+ + + A G ++ + D K E ++ Sbjct: 100 SKGFGFLIPE--EEGQKDVFIPSNCINGA-----MNGDKISVRVTREDTKTKKREGEVVE 152 Query: 72 LVPKSS 77 ++ +++ Sbjct: 153 IIERNT 158 >gi|27366480|ref|NP_762007.1| membrane protein [Vibrio vulnificus CMCP6] gi|37676186|ref|NP_936582.1| hypothetical protein VVA0526 [Vibrio vulnificus YJ016] gi|320158318|ref|YP_004190696.1| membrane protein [Vibrio vulnificus MO6-24/O] gi|27358046|gb|AAO06997.1| membrane protein [Vibrio vulnificus CMCP6] gi|37200727|dbj|BAC96552.1| predicted membrane protein [Vibrio vulnificus YJ016] gi|319933630|gb|ADV88493.1| membrane protein [Vibrio vulnificus MO6-24/O] Length = 200 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 M ++G I ++ DKG GFI +GS E ++ + G L + +VT++ V+ + Sbjct: 1 MAYKGRIAQWSHDKGNGFIKIDGSGEM-----VYFNKAEVIGSATLDD--VVTFE-VERN 52 Query: 61 ANGKYSAENLK 71 +G+ A ++ Sbjct: 53 KHGQVVAVAVQ 63 >gi|238928002|ref|ZP_04659762.1| ribonuclease R [Selenomonas flueggei ATCC 43531] gi|238883962|gb|EEQ47600.1| ribonuclease R [Selenomonas flueggei ATCC 43531] Length = 898 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 14 KGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 KG+GFI P+ TE DVF+ SA + G V ++ G+ Sbjct: 83 KGFGFIIPDVRETEEETDVFVPGSA-----MGTAMHGDRVVARVTPSEQPGR 129 >gi|206560707|ref|YP_002231472.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia J2315] gi|257096670|sp|B4E5M6|PNP_BURCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|198036749|emb|CAR52649.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia J2315] Length = 713 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S + + + + L EGQ V +Q D G+ Sbjct: 649 GKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 689 >gi|107023192|ref|YP_621519.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia AU 1054] gi|116690274|ref|YP_835897.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia HI2424] gi|123244852|sp|Q1BV09|PNP_BURCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470943|sp|A0K927|PNP_BURCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|105893381|gb|ABF76546.1| 3' exoribonuclease [Burkholderia cenocepacia AU 1054] gi|116648363|gb|ABK09004.1| 3' exoribonuclease [Burkholderia cenocepacia HI2424] Length = 715 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S + + + + L EGQ V +Q D G+ Sbjct: 651 GKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|221199652|ref|ZP_03572696.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2M] gi|221205448|ref|ZP_03578463.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2] gi|221174286|gb|EEE06718.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2] gi|221180937|gb|EEE13340.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2M] Length = 715 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S + + + + L EGQ V +Q D G+ Sbjct: 651 GKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|197118978|ref|YP_002139405.1| exoribonuclease R [Geobacter bemidjiensis Bem] gi|197088338|gb|ACH39609.1| exoribonuclease R [Geobacter bemidjiensis Bem] Length = 737 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE---GQLVTYDYVQNDANGKYSAENLK 71 GYGF+ PE E G+D+F+ LTE G +V V +GK Sbjct: 77 GYGFVMPE---EGGEDLFVPA--------RYLTEYMNGDIVEAQVVSTRRDGKREGRVTA 125 Query: 72 LV 73 LV Sbjct: 126 LV 127 >gi|221211731|ref|ZP_03584710.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD1] gi|221169092|gb|EEE01560.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD1] Length = 713 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S + + + + L EGQ V +Q D G+ Sbjct: 649 GKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 689 >gi|161524200|ref|YP_001579212.1| polynucleotide phosphorylase/polyadenylase [Burkholderia multivorans ATCC 17616] gi|189351043|ref|YP_001946671.1| polynucleotide phosphorylase/polyadenylase [Burkholderia multivorans ATCC 17616] gi|226702628|sp|A9AJP0|PNP_BURM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|160341629|gb|ABX14715.1| Polyribonucleotide nucleotidyltransferase [Burkholderia multivorans ATCC 17616] gi|189335065|dbj|BAG44135.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans ATCC 17616] Length = 715 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S + + + + L EGQ V +Q D G+ Sbjct: 651 GKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|170733613|ref|YP_001765560.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia MC0-3] gi|226702627|sp|B1JVP5|PNP_BURCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169816855|gb|ACA91438.1| Polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia MC0-3] Length = 715 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S + + + + L EGQ V +Q D G+ Sbjct: 651 GKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGR 691 >gi|22125068|ref|NP_668491.1| hypothetical protein y1165 [Yersinia pestis KIM 10] gi|108808498|ref|YP_652414.1| hypothetical protein YPA_2505 [Yersinia pestis Antiqua] gi|108811243|ref|YP_647010.1| hypothetical protein YPN_1079 [Yersinia pestis Nepal516] gi|145599923|ref|YP_001163999.1| hypothetical protein YPDSF_2660 [Yersinia pestis Pestoides F] gi|229895930|ref|ZP_04511100.1| putative cold-shock protein [Yersinia pestis Pestoides A] gi|229901478|ref|ZP_04516600.1| putative cold-shock protein [Yersinia pestis Nepal516] gi|21957921|gb|AAM84742.1|AE013720_6 putative cold-shock protein [Yersinia pestis KIM 10] gi|108774891|gb|ABG17410.1| cold-shock DNA-binding protein family [Yersinia pestis Nepal516] gi|108780411|gb|ABG14469.1| cold-shock DNA-binding protein family [Yersinia pestis Antiqua] gi|145211619|gb|ABP41026.1| cold-shock DNA-binding protein family [Yersinia pestis Pestoides F] gi|229681407|gb|EEO77501.1| putative cold-shock protein [Yersinia pestis Nepal516] gi|229700853|gb|EEO88882.1| putative cold-shock protein [Yersinia pestis Pestoides A] gi|320016203|gb|ADV99774.1| putative cold-shock protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 163 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G I + DKG+GFIT E+GD+ + H + A + +G VT++ N Sbjct: 3 CMMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNT 56 Query: 61 ANGKYSAENLKLVPKS 76 SA +K+ +S Sbjct: 57 KG--LSAFAVKVAIES 70 >gi|119577018|gb|EAW56614.1| cold shock domain containing E1, RNA-binding, isoform CRA_c [Homo sapiens] Length = 206 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A L + + Sbjct: 37 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ 92 Query: 76 S 76 Sbjct: 93 E 93 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 4/41 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 +GFI + ++F H S L L G V + Sbjct: 166 FGFIER---GDVVKEIFFHYSEFKGD-LETLQPGDDVEFTI 202 >gi|24373299|ref|NP_717342.1| cold shock domain-contain protein [Shewanella oneidensis MR-1] gi|24347543|gb|AAN54786.1|AE015618_7 cold shock domain family protein [Shewanella oneidensis MR-1] Length = 224 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 11/72 (15%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQND 60 +G + Y K YGFI + G+ FLH S + G L +G +V +D Sbjct: 2 KGKVVSYLAAKKYGFIQGD----DGESYFLHFSELLDKKDEG--KLVKGSMVHFDPTPTP 55 Query: 61 ANGKYSAENLKL 72 +A+ + L Sbjct: 56 KG--LAAKAISL 65 >gi|297832618|ref|XP_002884191.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330031|gb|EFH60450.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 55 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 27 SGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 SGDD+F+H+S ++S +L + V + ++A+ + E Sbjct: 5 SGDDLFVHQS-ISSEKFRSLAVDEAVEFKVEVDNASRLKTVEV 46 >gi|269303381|gb|ACZ33481.1| 3'-5' exoribonuclease, VacB and RNase II family [Chlamydophila pneumoniae LPCoLN] Length = 659 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 KG+GF++P+ E D+F+ + A +G V + +G+ Sbjct: 13 ARKGFGFVSPDNPEEYPFDIFVPARDLRGA-----LDGDHVIVSVLPYPRDGQK 61 >gi|15618415|ref|NP_224700.1| ribonuclease family protein [Chlamydophila pneumoniae CWL029] gi|15836035|ref|NP_300559.1| ribonuclease family protein [Chlamydophila pneumoniae J138] gi|16752538|ref|NP_444800.1| VacB/Rnb family exoribonuclease [Chlamydophila pneumoniae AR39] gi|33241856|ref|NP_876797.1| proteins of ribonuclease [Chlamydophila pneumoniae TW-183] gi|7674336|sp|Q9Z848|RNR_CHLPN RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB protein homolog gi|4376791|gb|AAD18644.1| ribonuclease family [Chlamydophila pneumoniae CWL029] gi|8163396|gb|AAF73648.1| exoribonuclease, VacB/Rnb family [Chlamydophila pneumoniae AR39] gi|8978874|dbj|BAA98710.1| ribonuclease family [Chlamydophila pneumoniae J138] gi|33236365|gb|AAP98454.1| proteins of ribonuclease [Chlamydophila pneumoniae TW-183] Length = 676 Score = 36.5 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 KG+GF++P+ E D+F+ + A +G V + +G+ Sbjct: 30 ARKGFGFVSPDNPEEYPFDIFVPARDLRGA-----LDGDHVIVSVLPYPRDGQK 78 >gi|224006730|ref|XP_002292325.1| hypothetical protein THAPSDRAFT_263580 [Thalassiosira pseudonana CCMP1335] gi|220971967|gb|EED90300.1| hypothetical protein THAPSDRAFT_263580 [Thalassiosira pseudonana CCMP1335] Length = 329 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK-YSAEN--LKL 72 +GFI + ++F H S + L G V + +++GK A N L+L Sbjct: 12 FGFI---LCADRNLELFFHYSELRDGHSDELNIGDEVEFRVGAAESHGKPPRAVNGVLRL 68 Query: 73 VPKSSN 78 P+ Sbjct: 69 APEEPQ 74 >gi|51595434|ref|YP_069625.1| hypothetical protein YPTB1087 [Yersinia pseudotuberculosis IP 32953] gi|51588716|emb|CAH20327.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] Length = 163 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 + G I + DKG+GFIT E+GD+ + H + A + +G VT++ N Sbjct: 3 CMMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNT 56 Query: 61 ANGKYSAENLKLVPKS 76 SA +K+ +S Sbjct: 57 KG--LSAFAVKVAIES 70 >gi|219119668|ref|XP_002180589.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408062|gb|EEC47997.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 1240 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 21/82 (25%) Query: 14 KG-YGFITPEGSTESGDDVFLHRSAVASAGLFN----------LTEGQLVTYDYVQNDAN 62 KG YGF+ E V+ H S++ + + L EGQ + + VQ+D Sbjct: 359 KGDYGFLKSNKRREQ---VYFHYSSIHLSDDEDGDGADDEDFVLKEGQEMKFLVVQDDRE 415 Query: 63 G-------KYSAENLKLVPKSS 77 G + SA +K P+ S Sbjct: 416 GSNRPSQRRISARKVKAQPRGS 437 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 14/75 (18%) Query: 16 YGFITP-EGSTESGDDVFLHRSAVASAGLFN------------LTEGQLVTYDYVQNDAN 62 +GFI+ + + + +F + S+V A + +G V +D + N Sbjct: 933 FGFISVLDDNAAKREILFFNLSSVLGASPETESTAPANKKKALIRKGDEVKFDIG-TEKN 991 Query: 63 GKYSAENLKLVPKSS 77 GK A N+ ++PK + Sbjct: 992 GKRVALNVTVLPKET 1006 >gi|304438603|ref|ZP_07398542.1| ribonuclease R [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368441|gb|EFM22127.1| ribonuclease R [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 904 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 14 KGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 KG+GFI P+ TE DVF+ SA + G V ++ G+ Sbjct: 83 KGFGFIIPDVRETEEETDVFVPGSA-----MGTAMHGDRVVARVTPSEQPGR 129 >gi|284038322|ref|YP_003388252.1| hypothetical protein Slin_3445 [Spirosoma linguale DSM 74] gi|283817615|gb|ADB39453.1| protein of unknown function DUF88 [Spirosoma linguale DSM 74] Length = 338 Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 GYGF+ + +F H +++ L V + +N A GK A +++L+ Sbjct: 284 GYGFVNYPPNN-----LFFHYTSLIDTDFNELQVDDEVEFTVGRN-AEGKDIAIDVRLL 336 >gi|255280022|ref|ZP_05344577.1| transcription termination factor Rho [Bryantella formatexigens DSM 14469] gi|255269113|gb|EET62318.1| transcription termination factor Rho [Bryantella formatexigens DSM 14469] Length = 482 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGFI +DV++ S + GL Sbjct: 123 GYGFIRSNNYLPGENDVYVSPSQIRRFGLKT 153 >gi|325663558|ref|ZP_08151968.1| ribonuclease R [Lachnospiraceae bacterium 4_1_37FAA] gi|325470457|gb|EGC73688.1| ribonuclease R [Lachnospiraceae bacterium 4_1_37FAA] Length = 723 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 9/68 (13%) Query: 1 MVHRGSIK---WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 ++ G++K ++ +K +GF+ P+ D+F+ + + G V + Sbjct: 131 ILSHGTVKLVGYFQKNKNFGFVIPDNDRFV-KDIFV---PLERS--KGAVTGHKVVVELT 184 Query: 58 QNDANGKY 65 +GK Sbjct: 185 SYGKDGKK 192 >gi|238762892|ref|ZP_04623860.1| Cold-shock DNA-binding domain protein [Yersinia kristensenii ATCC 33638] gi|238698903|gb|EEP91652.1| Cold-shock DNA-binding domain protein [Yersinia kristensenii ATCC 33638] Length = 160 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G I + DKG+GFIT E+GD+ + H + A + +G VT++ N Sbjct: 1 MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54 Query: 62 NGKYSAENLKLVPKS 76 SA +K+ +S Sbjct: 55 G--LSAFAVKVAIES 67 >gi|119946330|ref|YP_944010.1| cold-shock DNA-binding domain-containing protein [Psychromonas ingrahamii 37] gi|119864934|gb|ABM04411.1| cold-shock DNA-binding domain protein [Psychromonas ingrahamii 37] Length = 189 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 DK +G I T G D++ HR+++ +G L G V + + G A +++L Sbjct: 127 DKDFGRI----LTADGRDIYFHRNSLVDSGFDALEIGNEVRF-VEEAGDQGPQ-ASSVRL 180 Query: 73 V 73 + Sbjct: 181 I 181 >gi|91782608|ref|YP_557814.1| polynucleotide phosphorylase/polyadenylase [Burkholderia xenovorans LB400] gi|122970578|sp|Q142H7|PNP_BURXL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91686562|gb|ABE29762.1| Putative polyribonucleotide nucleotidyltransferase [Burkholderia xenovorans LB400] Length = 716 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 G D LH S +A+ + + L +GQ V +Q D G+ L+ ++N Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAAN 705 >gi|331087075|ref|ZP_08336149.1| ribonuclease R [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409355|gb|EGG88802.1| ribonuclease R [Lachnospiraceae bacterium 9_1_43BFAA] Length = 723 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 9/68 (13%) Query: 1 MVHRGSIK---WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 ++ G++K ++ +K +GF+ P+ D+F+ + + G V + Sbjct: 131 ILSHGTVKLVGYFQKNKNFGFVIPDNDRFV-KDIFV---PLERS--KGAVTGHKVVVELT 184 Query: 58 QNDANGKY 65 +GK Sbjct: 185 SYGKDGKK 192 >gi|315658865|ref|ZP_07911732.1| ribonuclease R [Staphylococcus lugdunensis M23590] gi|315495989|gb|EFU84317.1| ribonuclease R [Staphylococcus lugdunensis M23590] Length = 799 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 9/67 (13%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGKYSAEN 69 KG+GF+ PE + +D+F+ + + A +G V + Q D GK E Sbjct: 88 NKKGFGFLRPEN--DDMEDIFIPPTKINRA-----LDGDTVIVEVKQSKGDHKGKIEGEV 140 Query: 70 LKLVPKS 76 + S Sbjct: 141 KSIEKHS 147 >gi|296160625|ref|ZP_06843440.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1] gi|295889151|gb|EFG68954.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1] Length = 716 Score = 36.5 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYSAENLKLVPKSSN 78 G D LH S +A+ + + L +GQ V +Q D G+ L+ ++N Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAAN 705 >gi|289551358|ref|YP_003472262.1| 3'-to-5' exoribonuclease RNase R [Staphylococcus lugdunensis HKU09-01] gi|289180889|gb|ADC88134.1| 3'-to-5' exoribonuclease RNase R [Staphylococcus lugdunensis HKU09-01] Length = 791 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 9/67 (13%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ--NDANGKYSAEN 69 KG+GF+ PE + +D+F+ + + A +G V + Q D GK E Sbjct: 80 NKKGFGFLRPEN--DDMEDIFIPPTKINRA-----LDGDTVIVEVKQSKGDHKGKIEGEV 132 Query: 70 LKLVPKS 76 + S Sbjct: 133 KSIEKHS 139 >gi|255011444|ref|ZP_05283570.1| hypothetical protein Bfra3_20035 [Bacteroides fragilis 3_1_12] Length = 1015 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 11/49 (22%) Query: 9 WYNPDKGYGF-ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 W+N KG GF I E AVA +G L GQ +T+D+ Sbjct: 576 WFNGGKG-GFSIRKEADG---------VKAVAYSGARTLKPGQSITFDF 614 >gi|311279890|ref|YP_003942121.1| Cold-shock protein DNA-binding protein [Enterobacter cloacae SCF1] gi|308749085|gb|ADO48837.1| Cold-shock protein DNA-binding protein [Enterobacter cloacae SCF1] Length = 160 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%) Query: 4 RGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 +G+I W+ DKG+GFI E+GD+ + H + A + + VT++ N Sbjct: 2 QGTITTWF-EDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTNSKG 54 Query: 63 GKYSAENLKLVPKS 76 SA +K++P S Sbjct: 55 --LSAYAVKVIPDS 66 >gi|294139378|ref|YP_003555356.1| cold shock domain family protein [Shewanella violacea DSS12] gi|293325847|dbj|BAJ00578.1| cold shock domain family protein [Shewanella violacea DSS12] Length = 158 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 9/47 (19%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESG---------DDVFLHRSAVA 39 + +G + +N DKG GFI P+ S ++F+H SA+ Sbjct: 18 MLKGILIRWNDDKGCGFIRPDASHVDMATLHGPASEQEIFIHISALK 64 >gi|237809346|ref|YP_002893786.1| ribonuclease R [Tolumonas auensis DSM 9187] gi|237501607|gb|ACQ94200.1| ribonuclease R [Tolumonas auensis DSM 9187] Length = 806 Score = 36.1 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 GYGF+ P+ G D+F + + +L G V + DA G+ A ++L+ Sbjct: 96 GYGFLRPDS---GGADLF-----LNQWDMASLMHGDYVLVQPTKTDAKGRQEARLVRLL 146 >gi|313149261|ref|ZP_07811454.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138028|gb|EFR55388.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 1002 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 11/49 (22%) Query: 9 WYNPDKGYGF-ITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 W+N KG GF I E AVA +G L GQ +T+D+ Sbjct: 563 WFNGGKG-GFSIRKEADG---------VKAVAYSGARTLKPGQSITFDF 601 >gi|283478943|emb|CAY74859.1| Cold shock-like protein cspD (CPS-D) [Erwinia pyrifoliae DSM 12163] Length = 40 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 7/23 (30%), Positives = 8/23 (34%) Query: 40 SAGLFNLTEGQLVTYDYVQNDAN 62 G L GQ V +D Q Sbjct: 1 MDGYRTLKAGQQVQFDVHQGPKG 23 >gi|74316626|ref|YP_314366.1| RNAse R [Thiobacillus denitrificans ATCC 25259] gi|74056121|gb|AAZ96561.1| exoribonuclease II [Thiobacillus denitrificans ATCC 25259] Length = 758 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 G+GF+ PE E GDD+F S L G V D G+ A+ ++++ Sbjct: 112 GFGFVVPE---EGGDDLF--LSPKEM--HRVLH-GDKVLVRVAGFDRRGRREAKIVEVLE 163 >gi|220910201|ref|YP_002485512.1| cold-shock DNA-binding domain-containing protein [Cyanothece sp. PCC 7425] gi|219866812|gb|ACL47151.1| cold-shock DNA-binding domain protein [Cyanothece sp. PCC 7425] Length = 207 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 ++GYGF+ T G++++ HR++V L G V + V+ A +++ Sbjct: 131 EQGYGFL----KTLGGEEIYFHRNSVLHDDFERLEVGTGVRFVAVEGAEG--LQASTVQI 184 Query: 73 VPK 75 V K Sbjct: 185 VDK 187 >gi|85857886|ref|YP_460088.1| cold shock DNA -binding domain-containing protein [Syntrophus aciditrophicus SB] gi|85720977|gb|ABC75920.1| cold shock DNA-binding domain [Syntrophus aciditrophicus SB] Length = 176 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 PD+GYGF+ G DV+ H ++V + L G V ++ D + S+ + Sbjct: 121 PDQGYGFLV----HPEGYDVYFHANSVLNRDFDKLAVGMEVRFNEEMGDKGPQASSVIV 175 >gi|238752586|ref|ZP_04614059.1| Cold-shock DNA-binding domain protein [Yersinia rohdei ATCC 43380] gi|238709177|gb|EEQ01422.1| Cold-shock DNA-binding domain protein [Yersinia rohdei ATCC 43380] Length = 160 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G I + DKG+GFIT E+GD+ + H + A + +G VT++ N Sbjct: 1 MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54 Query: 62 NGKYSAENLKLVPKS 76 SA +K+ +S Sbjct: 55 G--LSAFAVKVAIES 67 >gi|260881476|ref|ZP_05404494.2| ribonuclease R [Mitsuokella multacida DSM 20544] gi|260848528|gb|EEX68535.1| ribonuclease R [Mitsuokella multacida DSM 20544] Length = 897 Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 7/68 (10%) Query: 13 DKGYGFITPE-GSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS-AENL 70 KG+GFI P+ +E DVF+ A L G V G+ E + Sbjct: 76 AKGFGFIIPDVRESEEETDVFV-----PGADLNTAMHGDRVVARVTPAQEEGRSREGEII 130 Query: 71 KLVPKSSN 78 +++ +++ Sbjct: 131 RILERANE 138 >gi|283477603|emb|CAY73519.1| Cold shock-like protein cspLA (CspL) [Erwinia pyrifoliae DSM 12163] Length = 158 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 9/68 (13%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 W+ DKG+GFI E+GD+ + H + A + + VT++ N SA Sbjct: 8 WF-KDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTNTKG--LSAY 58 Query: 69 NLKLVPKS 76 +K+ P+S Sbjct: 59 AVKVAPES 66 >gi|187926454|ref|YP_001892799.1| putative cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|241665941|ref|YP_002984300.1| cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] gi|309778742|ref|ZP_07673515.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] gi|187728208|gb|ACD29372.1| putative cold-shock DNA-binding domain protein [Ralstonia pickettii 12J] gi|240867968|gb|ACS65628.1| putative cold-shock DNA-binding domain protein [Ralstonia pickettii 12D] gi|308922450|gb|EFP68074.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] Length = 68 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 F+ S + + EGQ V++D V+ +G+ A N+K + Sbjct: 28 FIRDSEIQFSRSQTFHEGQRVSFD-VEIGPDGELIAVNIKPI 68 >gi|238790449|ref|ZP_04634219.1| Cold-shock DNA-binding domain protein [Yersinia frederiksenii ATCC 33641] gi|238721475|gb|EEQ13145.1| Cold-shock DNA-binding domain protein [Yersinia frederiksenii ATCC 33641] Length = 160 Score = 36.1 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G I + DKG+GFIT E+GD+ + H + A + +G VT++ N Sbjct: 1 MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54 Query: 62 NGKYSAENLKLVPKS 76 SA +K+ +S Sbjct: 55 G--LSAYAVKVAIES 67 >gi|295096673|emb|CBK85763.1| cold-shock DNA-binding protein family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 157 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 W+ DKG+GFI E+GD+ + H + A + + VT++ N SA Sbjct: 8 WF-KDKGFGFI----KDENGDNRYFHV--IKVANPDLIKKDAAVTFEPTTNSKG--LSAY 58 Query: 69 NLKLVPKS 76 +K++P+S Sbjct: 59 AVKVIPES 66 >gi|145629456|ref|ZP_01785254.1| cold shock-like protein CspD [Haemophilus influenzae 22.1-21] gi|144978299|gb|EDJ88063.1| cold shock-like protein CspD [Haemophilus influenzae 22.1-21] Length = 37 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 11/23 (47%) Query: 40 SAGLFNLTEGQLVTYDYVQNDAN 62 G +L GQ V ++ + +D Sbjct: 1 MDGYRSLKAGQKVQFEVLHSDKG 23 >gi|326201367|ref|ZP_08191239.1| ribonuclease R [Clostridium papyrosolvens DSM 2782] gi|325988935|gb|EGD49759.1| ribonuclease R [Clostridium papyrosolvens DSM 2782] Length = 788 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDY 56 + +GF+ P+ SG D+F+ +S A +GQ V + Sbjct: 145 FENSMSFGFVVPDNKRISG-DIFVSKSEFQGA-----KKGQKVVVEI 185 >gi|269837033|ref|YP_003319261.1| transcription termination factor Rho [Sphaerobacter thermophilus DSM 20745] gi|269786296|gb|ACZ38439.1| transcription termination factor Rho [Sphaerobacter thermophilus DSM 20745] Length = 417 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G+GF+ E +D+++ +S + GL G V+ Sbjct: 63 GFGFLRGERYLPGPNDIYVSQSQIRRFGLRT---GDWVS 98 >gi|209518519|ref|ZP_03267340.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160] gi|209501064|gb|EEA01099.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160] Length = 711 Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S +A+ + + L +GQ V +Q D G+ Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGR 691 >gi|45440951|ref|NP_992490.1| hypothetical protein YP_1121 [Yersinia pestis biovar Microtus str. 91001] gi|166008568|ref|ZP_02229466.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212632|ref|ZP_02238667.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399412|ref|ZP_02304936.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167423108|ref|ZP_02314861.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270489664|ref|ZP_06206738.1| cold-shock DNA-binding domain protein [Yersinia pestis KIM D27] gi|45435810|gb|AAS61367.1| putative cold-shock protein [Yersinia pestis biovar Microtus str. 91001] gi|165992950|gb|EDR45251.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206563|gb|EDR51043.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167051916|gb|EDR63324.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057278|gb|EDR67024.1| cold-shock DNA-binding domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262362610|gb|ACY59331.1| putative cold-shock protein [Yersinia pestis D106004] gi|262366387|gb|ACY62944.1| putative cold-shock protein [Yersinia pestis D182038] gi|270338168|gb|EFA48945.1| cold-shock DNA-binding domain protein [Yersinia pestis KIM D27] Length = 160 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G I + DKG+GFIT E+GD+ + H + A + +G VT++ N Sbjct: 1 MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54 Query: 62 NGKYSAENLKLVPKS 76 SA +K+ +S Sbjct: 55 G--LSAFAVKVAIES 67 >gi|238795420|ref|ZP_04638935.1| Cold-shock DNA-binding domain protein [Yersinia mollaretii ATCC 43969] gi|238720539|gb|EEQ12340.1| Cold-shock DNA-binding domain protein [Yersinia mollaretii ATCC 43969] Length = 160 Score = 36.1 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G I + DKG+GFIT E+GD+ + H + A + +G VT++ N Sbjct: 1 MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54 Query: 62 NGKYSAENLKLVPKS 76 SA +K+ +S Sbjct: 55 G--LSAFAVKVAIES 67 >gi|116670295|ref|YP_831228.1| cold-shock DNA-binding domain-containing protein [Arthrobacter sp. FB24] gi|116610404|gb|ABK03128.1| putative cold-shock DNA-binding domain protein [Arthrobacter sp. FB24] Length = 178 Score = 35.7 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLT 47 G++ ++ +KG G I P+ + + V LH +++ L Sbjct: 137 GAVLRFHAEKGLGIIVPD---DGSEVVLLHYTSIVGVKYRVLR 176 >gi|323525432|ref|YP_004227585.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1001] gi|323382434|gb|ADX54525.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1001] Length = 715 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S +A+ + + L +GQ V +Q D G+ Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGR 691 >gi|238791627|ref|ZP_04635265.1| Cold-shock DNA-binding domain protein [Yersinia intermedia ATCC 29909] gi|238729243|gb|EEQ20759.1| Cold-shock DNA-binding domain protein [Yersinia intermedia ATCC 29909] Length = 160 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G I + DKG+GFIT E+GD+ + H + A + +G VT++ N Sbjct: 1 MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54 Query: 62 NGKYSAENLKLVPKS 76 SA +K+ +S Sbjct: 55 G--LSAFAVKVAIES 67 >gi|153948592|ref|YP_001401921.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis IP 31758] gi|152960087|gb|ABS47548.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis IP 31758] Length = 160 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G I + DKG+GFIT E+GD+ + H + A + +G VT++ N Sbjct: 1 MMNGRITTFFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTK 54 Query: 62 NGKYSAENLKLVPKS 76 SA +K+ +S Sbjct: 55 G--LSAFAVKVAIES 67 >gi|170691678|ref|ZP_02882842.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis C4D1M] gi|170142962|gb|EDT11126.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis C4D1M] Length = 715 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S +A+ + + L +GQ V +Q D G+ Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGR 691 >gi|328954437|ref|YP_004371771.1| ribonuclease R [Desulfobacca acetoxidans DSM 11109] gi|328454761|gb|AEB10590.1| ribonuclease R [Desulfobacca acetoxidans DSM 11109] Length = 700 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 8/61 (13%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 G+GF+TPE T D+F + L G V + GK ++++ Sbjct: 70 GFGFVTPESQT---GDIF-----INPGNLTEALHGDKVVVRLERRGRRGKQEGRIIRVLE 121 Query: 75 K 75 + Sbjct: 122 R 122 >gi|222056473|ref|YP_002538835.1| ribonuclease R [Geobacter sp. FRC-32] gi|221565762|gb|ACM21734.1| ribonuclease R [Geobacter sp. FRC-32] Length = 758 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 15/64 (23%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE---GQLVTYDYVQNDANGKYSAENLK 71 GYGF+ PE G+DVF+ L E G V V +GK +K Sbjct: 79 GYGFVMPE----EGEDVFIPA--------RYLRENMHGDRVEVQIVAKKRDGKQEGRIVK 126 Query: 72 LVPK 75 + + Sbjct: 127 TLER 130 >gi|159163306|pdb|1WFQ|A Chain A, Solution Structure Of The First Cold-Shock Domain Of The Human Kiaa0885 Protein (Unr Protein) Length = 89 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPK 75 YGFI +E +F H S L +L G V ++ + GK A +KLV Sbjct: 30 YGFIQ---CSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIA--VKLVKI 83 Query: 76 SS 77 S Sbjct: 84 SG 85 >gi|307730344|ref|YP_003907568.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1003] gi|307584879|gb|ADN58277.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1003] Length = 715 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S +A+ + + L +GQ V +Q D G+ Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGR 691 >gi|295676033|ref|YP_003604557.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1002] gi|295435876|gb|ADG15046.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1002] Length = 711 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S +A+ + + L +GQ V +Q D G+ Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGR 691 >gi|187923336|ref|YP_001894978.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phytofirmans PsJN] gi|226702630|sp|B2T2E3|PNP_BURPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187714530|gb|ACD15754.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phytofirmans PsJN] Length = 718 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S +A+ + + L +GQ V +Q D G+ Sbjct: 651 GKDGLLHISEIANERIKDINDYLKDGQQVKVKVIQTDEKGR 691 >gi|153814373|ref|ZP_01967041.1| hypothetical protein RUMTOR_00583 [Ruminococcus torques ATCC 27756] gi|317500087|ref|ZP_07958322.1| transcription termination factor Rho [Lachnospiraceae bacterium 8_1_57FAA] gi|331087689|ref|ZP_08336615.1| transcription termination factor Rho [Lachnospiraceae bacterium 3_1_46FAA] gi|145848769|gb|EDK25687.1| hypothetical protein RUMTOR_00583 [Ruminococcus torques ATCC 27756] gi|316898572|gb|EFV20608.1| transcription termination factor Rho [Lachnospiraceae bacterium 8_1_57FAA] gi|330409670|gb|EGG89106.1| transcription termination factor Rho [Lachnospiraceae bacterium 3_1_46FAA] Length = 473 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 15/31 (48%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 G+GFI + +DV++ + + GL Sbjct: 114 GFGFIRSDNYLPGENDVYVSPAQIRRFGLKT 144 >gi|226940843|ref|YP_002795917.1| polynucleotide phosphorylase/polyadenylase [Laribacter hongkongensis HLHK9] gi|254782724|sp|C1D8W8|PNP_LARHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226715770|gb|ACO74908.1| Pnp [Laribacter hongkongensis HLHK9] Length = 701 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 10/68 (14%) Query: 2 VHRGSI-KWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGL----FNLTEGQLVTYDY 56 ++ G++ K + K G I G D +H S +A+ + +L EGQ V Sbjct: 624 IYEGTVVKILD--KNVGAIVQIMP---GRDGLVHISQIANERIANVADHLQEGQQVRVKV 678 Query: 57 VQNDANGK 64 ++ D G+ Sbjct: 679 LETDERGR 686 >gi|118379492|ref|XP_001022912.1| conserved hypothetical protein [Tetrahymena thermophila] gi|89304679|gb|EAS02667.1| conserved hypothetical protein [Tetrahymena thermophila SB210] Length = 1152 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 13/85 (15%) Query: 3 HRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASA-------GLFNLTEGQLVTYD 55 +G +K+++ +GF + E DVF+H + +L + Sbjct: 880 KKGRLKFFDTSNNFGFFNLD---EDQSDVFVHLDDLQVTTVPKDILKHSSLM-NLRFKFH 935 Query: 56 YVQNDANGKYS--AENLKLVPKSSN 78 +++ K S A +++ +P+ S Sbjct: 936 FIKYIGKHKQSRKAVDIEYIPEESE 960 >gi|308233576|ref|ZP_07664313.1| transcription termination factor Rho [Atopobium vaginae DSM 15829] gi|328943971|ref|ZP_08241436.1| transcription termination factor Rho [Atopobium vaginae DSM 15829] gi|327491940|gb|EGF23714.1| transcription termination factor Rho [Atopobium vaginae DSM 15829] Length = 720 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLF 44 GYGFI +D F+H+ + GL Sbjct: 354 GYGFIRTGNYMSGDNDAFVHQQLIRQYGLR 383 >gi|240115680|ref|ZP_04729742.1| CspA [Neisseria gonorrhoeae PID18] gi|240117975|ref|ZP_04732037.1| CspA [Neisseria gonorrhoeae PID1] gi|268601355|ref|ZP_06135522.1| CspA [Neisseria gonorrhoeae PID18] gi|268603683|ref|ZP_06137850.1| CspA [Neisseria gonorrhoeae PID1] gi|268585486|gb|EEZ50162.1| CspA [Neisseria gonorrhoeae PID18] gi|268587814|gb|EEZ52490.1| CspA [Neisseria gonorrhoeae PID1] Length = 192 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KWY+ +K +GFI E G + F +SA + GQ+V ++ ++ Sbjct: 3 GFVKWYSYEKDFGFI----FGEDGHEYFFRKSA------GSDIPGQIVNFEPFEHSRG 50 >gi|302335537|ref|YP_003800744.1| transcription termination factor Rho [Olsenella uli DSM 7084] gi|301319377|gb|ADK67864.1| transcription termination factor Rho [Olsenella uli DSM 7084] Length = 683 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 GYGF+ DD F+H+ + G L G V Sbjct: 319 GYGFLRTGNYMVGEDDAFVHQQLIRQYG---LRAGDKV 353 >gi|224061583|ref|XP_002300552.1| predicted protein [Populus trichocarpa] gi|222847810|gb|EEE85357.1| predicted protein [Populus trichocarpa] Length = 190 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 15/26 (57%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTES 27 GS+KW++ +GYG P +++ Sbjct: 66 RQTGSVKWFSSQRGYGLTAPSDGSKN 91 >gi|153003332|ref|YP_001377657.1| cold-shock DNA-binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026905|gb|ABS24673.1| putative cold-shock DNA-binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 197 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 P++ YGF+ T G DV+ H +AV L G+ V + V+ + A + Sbjct: 128 PEESYGFL----RTADGRDVYFHANAVLRGLFSRLRVGRAVRF--VETRGDEGPQASTVD 181 Query: 72 LVP 74 +P Sbjct: 182 PLP 184 >gi|111052677|gb|ABH03579.1| CspA [Neisseria gonorrhoeae] Length = 192 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KWY+ +K +GFI E G + F +SA + GQ+V ++ ++ Sbjct: 3 GFVKWYSYEKDFGFI----FGEDGHEYFFRKSA------GSDIPGQIVNFEPFEHSRG 50 >gi|319941417|ref|ZP_08015745.1| polyribonucleotide nucleotidyltransferase [Sutterella wadsworthensis 3_1_45B] gi|319805037|gb|EFW01867.1| polyribonucleotide nucleotidyltransferase [Sutterella wadsworthensis 3_1_45B] Length = 707 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I G D LH S +A+ + L EGQ V ++ D G+ Sbjct: 642 FGAIVQLLP---GKDGLLHISQIANERVNAVSDYLKEGQKVRVKVIEADEKGR 691 >gi|320353591|ref|YP_004194930.1| Cold-shock protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320122093|gb|ADW17639.1| Cold-shock protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 182 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 YG IT T D++ HR++V + LT G V + ++ G A N+K+V Sbjct: 131 YGTIT----TSDDRDIYFHRNSVLNTNFDALTIGTAVQFR-EEDGDKGPQ-ARNVKVV 182 >gi|220930736|ref|YP_002507645.1| transcription termination factor Rho [Clostridium cellulolyticum H10] gi|220001064|gb|ACL77665.1| transcription termination factor Rho [Clostridium cellulolyticum H10] Length = 690 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGF+ E DV++ S + GL Sbjct: 328 GYGFLRSENYLSGPKDVYVSPSQIRRFGLKT 358 >gi|240112925|ref|ZP_04727415.1| CspA [Neisseria gonorrhoeae MS11] gi|268599002|ref|ZP_06133169.1| CspA [Neisseria gonorrhoeae MS11] gi|15004539|gb|AAK77142.1|AF374415_5 CspA [Neisseria gonorrhoeae] gi|58891396|gb|AAW83084.1| CspA [Neisseria gonorrhoeae] gi|268583133|gb|EEZ47809.1| CspA [Neisseria gonorrhoeae MS11] Length = 192 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KWY+ +K +GFI E G + F +SA + GQ+V ++ ++ Sbjct: 3 GFVKWYSYEKDFGFI----FGEDGHEYFFRKSA------GSDIPGQIVNFEPFEHSRG 50 >gi|260440507|ref|ZP_05794323.1| CspA [Neisseria gonorrhoeae DGI2] gi|291043812|ref|ZP_06569528.1| cold shock protein cspA [Neisseria gonorrhoeae DGI2] gi|291012275|gb|EFE04264.1| cold shock protein cspA [Neisseria gonorrhoeae DGI2] Length = 192 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KWY+ +K +GFI E G + F +SA + GQ+V ++ ++ Sbjct: 3 GFVKWYSYEKDFGFI----FGEDGHEYFFRKSA------GSDIPGQIVNFEPFEHSRG 50 >gi|194098626|ref|YP_002001688.1| CspA [Neisseria gonorrhoeae NCCP11945] gi|193933916|gb|ACF29740.1| CspA [Neisseria gonorrhoeae NCCP11945] Length = 195 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KWY+ +K +GFI E G + F +SA + GQ+V ++ ++ Sbjct: 3 GFVKWYSYEKDFGFI----FGEDGHEYFFRKSA------GSDIPGQIVNFEPFEHSRG 50 >gi|329914598|ref|ZP_08276135.1| 3'-to-5' exoribonuclease RNase R [Oxalobacteraceae bacterium IMCC9480] gi|327545098|gb|EGF30392.1| 3'-to-5' exoribonuclease RNase R [Oxalobacteraceae bacterium IMCC9480] Length = 180 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 8/62 (12%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 G+GF+ P+ + GDD+FL + L G V + D G+ +++V Sbjct: 82 GFGFLVPD---DGGDDLFLSEKEMQ----KVLH-GDRVKARIIGTDRRGRPEGTIVEVVS 133 Query: 75 KS 76 ++ Sbjct: 134 RA 135 >gi|83591218|ref|YP_431227.1| transcription termination factor Rho [Moorella thermoacetica ATCC 39073] gi|83574132|gb|ABC20684.1| transcription termination factor Rho [Moorella thermoacetica ATCC 39073] Length = 429 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 GYGF+ P G SGDD+++ S + L G V Sbjct: 71 GYGFLRPFGYLASGDDIYISASQIRRFDLRT---GDKV 105 >gi|326202284|ref|ZP_08192153.1| transcription termination factor Rho [Clostridium papyrosolvens DSM 2782] gi|325987402|gb|EGD48229.1| transcription termination factor Rho [Clostridium papyrosolvens DSM 2782] Length = 691 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGF+ E DV++ S + GL Sbjct: 329 GYGFLRSENYLSGPKDVYVSPSQIRRFGLKT 359 >gi|261854978|ref|YP_003262261.1| ribonuclease R [Halothiobacillus neapolitanus c2] gi|261835447|gb|ACX95214.1| ribonuclease R [Halothiobacillus neapolitanus c2] Length = 803 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 8/62 (12%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 G+GF+ P+ + GDDVF ++ + L G D G+ ++++ Sbjct: 100 GFGFLVPD---DGGDDVF-----LSPRVMRALLNGDRAVVQVTGLDRRGRREGNLVEVIE 151 Query: 75 KS 76 ++ Sbjct: 152 RA 153 >gi|237747634|ref|ZP_04578114.1| exoribonuclease RNAse R [Oxalobacter formigenes OXCC13] gi|229378996|gb|EEO29087.1| exoribonuclease RNAse R [Oxalobacter formigenes OXCC13] Length = 793 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 GYGF+ PE E GDD+F ++ + + V V D G+ + ++ Sbjct: 84 GYGFVIPE---EGGDDIF-----LSENEMHKVMHNDKVQVRVVNVDKRGRPEGLIVSVLT 135 Query: 75 KSS 77 ++ Sbjct: 136 RAH 138 >gi|240128234|ref|ZP_04740895.1| CspA [Neisseria gonorrhoeae SK-93-1035] gi|268686627|ref|ZP_06153489.1| CspA [Neisseria gonorrhoeae SK-93-1035] gi|268626911|gb|EEZ59311.1| CspA [Neisseria gonorrhoeae SK-93-1035] Length = 192 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN 62 G +KWY+ +K +GFI E G + F +SA + GQ+V ++ ++ Sbjct: 3 GFVKWYSYEKDFGFI----FGEDGHEYFFRKSA------GSDIPGQIVNFEPFEHSRG 50 >gi|332980855|ref|YP_004462296.1| transcription termination factor Rho [Mahella australiensis 50-1 BON] gi|332698533|gb|AEE95474.1| transcription termination factor Rho [Mahella australiensis 50-1 BON] Length = 601 Score = 35.7 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 GYGF+ E DV++ +S + GL G LV Q K+ A Sbjct: 232 GYGFLRSENYLPGNKDVYISQSQIRRFGLRT---GDLVKGKTRQAKEGEKFQA 281 >gi|295133350|ref|YP_003584026.1| cold shock protein, DNA-binding protein [Zunongwangia profunda SM-A87] gi|294981365|gb|ADF51830.1| cold shock protein, putative DNA-binding protein [Zunongwangia profunda SM-A87] Length = 143 Score = 35.7 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 8/63 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++ + +KGYGFI +SGD +F+H + L ++E V + Q A G Sbjct: 83 KGTVISFFIEKGYGFI---KDQKSGDHIFVHVKDL----LDEISEKDQVFF-VKQKTAKG 134 Query: 64 KYS 66 + Sbjct: 135 AKA 137 >gi|300113400|ref|YP_003759975.1| ribosomal subunit interface protein [Nitrosococcus watsonii C-113] gi|299539337|gb|ADJ27654.1| ribosomal subunit interface protein [Nitrosococcus watsonii C-113] Length = 182 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 YG I T G +++ HR+++ + G L G V + + D + S ++K Sbjct: 130 YGKIE----TIDGREIYFHRNSILNGGFKELKVGNEVHFIEEEGDLGPQASTVHIK 181 >gi|149907740|ref|ZP_01896487.1| putative Exoribonuclease R [Moritella sp. PE36] gi|149809410|gb|EDM69339.1| putative Exoribonuclease R [Moritella sp. PE36] Length = 841 Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 8/62 (12%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 G+GF P+ + G D+F+ ++ + L G + V+ + G+ A ++L+ Sbjct: 95 GFGFFRPD---DGGKDLFI---SIRQ--MSTLFHGDRILAQPVKEEFKGRKEARFVRLLD 146 Query: 75 KS 76 Sbjct: 147 AE 148 >gi|326338225|gb|EGD62054.1| Cold shock protein CspD [Escherichia coli O157:H7 str. 1125] Length = 39 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%) Query: 40 SAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 G L GQ V +D Q G +++ + + Sbjct: 1 MDGYRTLKAGQSVQFDVHQG-PKGNHASVIVPV 32 >gi|327438855|dbj|BAK15220.1| exoribonuclease R [Solibacillus silvestris StLB046] Length = 802 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 KG+GF+ PE + DD+F+ V A L E V ++ + + +K Sbjct: 80 NAKGFGFVAPE--EQGMDDIFIPAHEVNGA----LNE-DTVLVRVLKEQSGDRREGTVVK 132 Query: 72 LVPKS 76 +V +S Sbjct: 133 IVERS 137 >gi|323486281|ref|ZP_08091607.1| hypothetical protein HMPREF9474_03358 [Clostridium symbiosum WAL-14163] gi|323693928|ref|ZP_08108115.1| transcription termination factor Rho [Clostridium symbiosum WAL-14673] gi|323400391|gb|EGA92763.1| hypothetical protein HMPREF9474_03358 [Clostridium symbiosum WAL-14163] gi|323502025|gb|EGB17900.1| transcription termination factor Rho [Clostridium symbiosum WAL-14673] Length = 605 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 8/54 (14%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 G+GFI E +DV++ S + L G D V+ K + E Sbjct: 244 GFGFIRCENFLPGENDVYVAPSQIRRFNLKT---G-----DIVRGSRRVKTATE 289 >gi|294340865|emb|CAZ89260.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Thiomonas sp. 3As] Length = 719 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S +A+ + L EGQ V ++ D G+ Sbjct: 644 GKDGLLHISQIANERINKVSDFLQEGQKVRVKVIETDDKGR 684 >gi|296136710|ref|YP_003643952.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia K12] gi|295796832|gb|ADG31622.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia K12] Length = 719 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S +A+ + L EGQ V ++ D G+ Sbjct: 644 GKDGLLHISQIANERINKVSDFLQEGQKVRVKVIETDDKGR 684 >gi|77919746|ref|YP_357561.1| exoribonuclease RNase R [Pelobacter carbinolicus DSM 2380] gi|77545829|gb|ABA89391.1| RNAse R [Pelobacter carbinolicus DSM 2380] Length = 720 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 8/64 (12%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 GYGF+ PE + DVF + + + + +G V VQ + G Y L+++ Sbjct: 79 GYGFVIPEAA--GQADVF-----IPARYMREVMDGDRVAVR-VQRSSRGGYEGRVLRVLS 130 Query: 75 KSSN 78 ++ Sbjct: 131 RAHQ 134 >gi|325660742|ref|ZP_08149370.1| transcription termination factor Rho [Lachnospiraceae bacterium 4_1_37FAA] gi|331085534|ref|ZP_08334618.1| transcription termination factor Rho [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472816|gb|EGC76026.1| transcription termination factor Rho [Lachnospiraceae bacterium 4_1_37FAA] gi|330407421|gb|EGG86923.1| transcription termination factor Rho [Lachnospiraceae bacterium 9_1_43BFAA] Length = 441 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGFI + +DV++ S + L Sbjct: 82 GYGFIRSDNYLPGENDVYVSPSQIRRFNLKT 112 >gi|326801850|ref|YP_004319669.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21] gi|326552614|gb|ADZ80999.1| Cold-shock protein DNA-binding protein [Sphingobacterium sp. 21] Length = 50 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 22/71 (30%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G ++ +N +G+GF P+ + E VTY VQ Sbjct: 1 MQEGIVRIFNGSRGFGFTIPQRGK--------------------IHENDQVTYKVVQRSK 40 Query: 62 NGKYSAENLKL 72 SA LK+ Sbjct: 41 G--LSAIELKI 49 >gi|292670375|ref|ZP_06603801.1| ribonuclease R [Selenomonas noxia ATCC 43541] gi|292647967|gb|EFF65939.1| ribonuclease R [Selenomonas noxia ATCC 43541] Length = 900 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 6/52 (11%) Query: 14 KGYGFITPEG-STESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGK 64 KG+GFI P+ E DVF+ A L G V +++ G+ Sbjct: 83 KGFGFIIPDARENEEETDVFV-----PGAALATAMHGDRVVARVTPSESPGR 129 >gi|218290978|ref|ZP_03495026.1| ribonuclease R [Alicyclobacillus acidocaldarius LAA1] gi|218239060|gb|EED06264.1| ribonuclease R [Alicyclobacillus acidocaldarius LAA1] Length = 896 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS---AEN 69 +GYGF+ P+ E D+++ +SA+ A G V + G + E Sbjct: 71 ARGYGFVIPDDEAE--ADIYIPQSALNGA-----MSGDRVLVRLREERGKGAQAHREGEI 123 Query: 70 LKLVPK 75 +K++ + Sbjct: 124 VKILER 129 >gi|20806667|ref|NP_621838.1| transcription termination factor Rho [Thermoanaerobacter tengcongensis MB4] gi|20515117|gb|AAM23442.1| Transcription termination factor [Thermoanaerobacter tengcongensis MB4] Length = 488 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G+GF+ E T+ D+++ +S + GL G V Sbjct: 131 GFGFLRVENFTQGPKDIYISQSQIRRFGLKV---GDKV 165 >gi|120555300|ref|YP_959651.1| ribonuclease R [Marinobacter aquaeolei VT8] gi|120325149|gb|ABM19464.1| RNAse R [Marinobacter aquaeolei VT8] Length = 815 Score = 35.3 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 G+GF+ P+ + G D+F +A + G V Q D G+ + ++++ Sbjct: 101 GFGFLIPD---DGGSDLF--LTARQM---RQVFHGDRVAARVDQVDDRGRREGKIVEVLE 152 Query: 75 KSSN 78 ++ Sbjct: 153 HRTS 156 >gi|113867066|ref|YP_725555.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha H16] gi|122947022|sp|Q0KCT4|PNP_RALEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|113525842|emb|CAJ92187.1| polyribonucleotide nucleotidyltransferase [Ralstonia eutropha H16] Length = 723 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S + + + + L EGQ V +Q D G+ Sbjct: 646 GKDGLLHISEIVNERVKDIKDWLKEGQQVRVKLIQADEKGR 686 >gi|238758049|ref|ZP_04619230.1| Cold-shock DNA-binding domain protein [Yersinia aldovae ATCC 35236] gi|238703803|gb|EEP96339.1| Cold-shock DNA-binding domain protein [Yersinia aldovae ATCC 35236] Length = 159 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + DKG+GFIT E+GD+ + H + A + +G VT++ N SA Sbjct: 8 FFEDKGFGFIT----DENGDNRYFHI--IKVANPEMIKKGAEVTFEPTTNTKG--LSAFA 59 Query: 70 LKLVPKS 76 +K+ +S Sbjct: 60 VKVAIES 66 >gi|254479468|ref|ZP_05092794.1| Rho termination factor, RNA-binding domain family [Carboxydibrachium pacificum DSM 12653] gi|214034591|gb|EEB75339.1| Rho termination factor, RNA-binding domain family [Carboxydibrachium pacificum DSM 12653] Length = 325 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 G+GF+ E T+ D+++ +S + GL G V Sbjct: 118 GFGFLRVENFTQGPKDIYISQSQIRRFGLKV---GDKV 152 >gi|194289155|ref|YP_002005062.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis LMG 19424] gi|226702643|sp|B3R3W3|PNP_CUPTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193222990|emb|CAQ68995.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis LMG 19424] Length = 723 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S + + + + L EGQ V +Q D G+ Sbjct: 646 GKDGLLHISEIVNERVKDIKDWLKEGQQVRVKLIQADEKGR 686 >gi|94309868|ref|YP_583078.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus metallidurans CH34] gi|187611276|sp|Q1LPW7|PNP_RALME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|93353720|gb|ABF07809.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus metallidurans CH34] Length = 725 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S + + + + L EGQ V +Q D G+ Sbjct: 646 GKDGLLHISEIVNERVKDIKDWLKEGQQVRVKLIQADEKGR 686 >gi|303239255|ref|ZP_07325784.1| 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase [Acetivibrio cellulolyticus CD2] gi|302593300|gb|EFL63019.1| 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase [Acetivibrio cellulolyticus CD2] Length = 761 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%) Query: 8 KWYNPDKGYGFITPEGSTE-----SGDDVFLHRSAVASAGLFN 45 KW+N + Y +I P + +G+D+F + S AG+ Sbjct: 114 KWFNTN--YHYIVPAIDDDTQIKLNGEDIFAYYSEALDAGIKT 154 >gi|327285408|ref|XP_003227425.1| PREDICTED: protein lin-28 homolog A-like [Anolis carolinensis] Length = 151 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 6/27 (22%), Positives = 13/27 (48%) Query: 36 SAVASAGLFNLTEGQLVTYDYVQNDAN 62 S + G +L EG+ V + + ++ Sbjct: 20 SKLHMEGFRSLKEGEAVEFTFKKSSKG 46 >gi|85713281|ref|ZP_01044304.1| Exoribonuclease R [Idiomarina baltica OS145] gi|85692899|gb|EAQ30874.1| Exoribonuclease R [Idiomarina baltica OS145] Length = 785 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 10/65 (15%) Query: 15 GYGFITPEGSTESGDDVFL-HRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLV 73 G+GF PE E GDD+F+ H L G +V D GK ++++ Sbjct: 95 GFGFCQPE---EGGDDIFIPHH---QM--YSVLH-GDVVLVKVSGQDRKGKREGRVVRVI 145 Query: 74 PKSSN 78 N Sbjct: 146 EPRDN 150 >gi|224081663|ref|XP_002192271.1| PREDICTED: lin-28 homolog [Taeniopygia guttata] Length = 134 Score = 34.9 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 6/27 (22%), Positives = 13/27 (48%) Query: 36 SAVASAGLFNLTEGQLVTYDYVQNDAN 62 S + G +L EG+ V + + ++ Sbjct: 3 SKLHMEGFRSLKEGEAVEFTFKKSSKG 29 >gi|77165898|ref|YP_344423.1| sigma 54 modulation protein/ribosomal protein S30EA [Nitrosococcus oceani ATCC 19707] gi|254434884|ref|ZP_05048392.1| ribosomal subunit interface protein [Nitrosococcus oceani AFC27] gi|76884212|gb|ABA58893.1| Sigma 54 modulation protein/ribosomal protein S30EA [Nitrosococcus oceani ATCC 19707] gi|207091217|gb|EDZ68488.1| ribosomal subunit interface protein [Nitrosococcus oceani AFC27] Length = 182 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 YG I T G +++ H++++ + G L G V + + D + S ++K Sbjct: 130 YGKIE----TIDGREIYFHKNSILNGGFKELKVGNEVHFIEEEGDLGPQASTVHIK 181 >gi|302543102|ref|ZP_07295444.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC 53653] gi|302460720|gb|EFL23813.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC 53653] Length = 77 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%) Query: 34 HRSAVASAGLFNLTEGQLVTYDYVQND--ANGKYSAENLKLVPKSS 77 H S + AG L+ GQ V ++ +G +++VP++ Sbjct: 30 HFSHIEMAGFATLSPGQHVELEWEAPGFEQDGYEY-RAVRIVPRTG 74 >gi|315651449|ref|ZP_07904472.1| transcription termination factor [Eubacterium saburreum DSM 3986] gi|315486269|gb|EFU76628.1| transcription termination factor [Eubacterium saburreum DSM 3986] Length = 579 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 G+GFI E +DV++ + + GL G +V+ Sbjct: 216 GFGFIRCENFLPGDNDVYVAPTQIKKFGLRT---GDVVS 251 >gi|301384793|ref|ZP_07233211.1| cold shock domain family protein [Pseudomonas syringae pv. tomato Max13] gi|302060713|ref|ZP_07252254.1| cold shock domain family protein [Pseudomonas syringae pv. tomato K40] gi|302131941|ref|ZP_07257931.1| cold shock domain family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 74 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +V G + Y+ KG+GFI E G DVF V + + G +V ++ + Sbjct: 8 LVDTGFVNSYDSFKGFGFIRREK----GRDVFFFYDDVE-DVVNGIAMGDVVRFEVHEEP 62 Query: 61 ANGK 64 + Sbjct: 63 KGPR 66 >gi|82702034|ref|YP_411600.1| putative sigma 54 modulation protein/ribosomal protein S30EA [Nitrosospira multiformis ATCC 25196] gi|82410099|gb|ABB74208.1| putative sigma 54 modulation protein/ribosomal protein S30EA [Nitrosospira multiformis ATCC 25196] Length = 195 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTY 54 P++GYGF+ T SG +++ HR +A+ L EG V + Sbjct: 121 PEEGYGFVE----TSSGQELYFHRENLANNNFEQLEEGSEVQF 159 >gi|238917370|ref|YP_002930887.1| transcription termination factor Rho [Eubacterium eligens ATCC 27750] gi|238872730|gb|ACR72440.1| transcription termination factor Rho [Eubacterium eligens ATCC 27750] Length = 485 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 8/54 (14%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 GYGFI E +DV++ S + L G D +Q K S E Sbjct: 126 GYGFIRCENFLPGENDVYVSPSQIRKFNLKT---G-----DIIQGPKRMKTSGE 171 >gi|167461762|ref|ZP_02326851.1| ribonuclease R [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384484|ref|ZP_08058166.1| ribonuclease R-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150694|gb|EFX44169.1| ribonuclease R-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 834 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 7/59 (11%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 + + YGF+ P+ D+F + +A +GQ V VQ G+ +AE Sbjct: 142 FQQHESYGFVLPDDRRVQ-RDIF-----IPAAAFKGAVDGQKVVVKIVQ-YPEGRAAAE 193 >gi|257066263|ref|YP_003152519.1| ribonuclease R [Anaerococcus prevotii DSM 20548] gi|256798143|gb|ACV28798.1| ribonuclease R [Anaerococcus prevotii DSM 20548] Length = 708 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 + +KG+GF+ P+ + G+D+F +A V + + +GK Sbjct: 142 FQKNKGFGFVIPDDRSY-GEDIF-----IAEKFFNKAKNKDKVVVEIINYPKDGKP 191 >gi|332187913|ref|ZP_08389646.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17] gi|332012074|gb|EGI54146.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17] Length = 773 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%) Query: 27 SGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D +H S + + + L+EGQ V ++ D GK Sbjct: 642 GGKDGLVHVSEIKNERVEKVSDVLSEGQEVKVKVLEIDPRGK 683 >gi|226314809|ref|YP_002774705.1| ribonuclease R [Brevibacillus brevis NBRC 100599] gi|226097759|dbj|BAH46201.1| ribonuclease R [Brevibacillus brevis NBRC 100599] Length = 840 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 9/63 (14%) Query: 14 KGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG-KYSAENLKL 72 KG+GF+ PE T DDV++H + + A L G V + V+ +A G + + +++ Sbjct: 78 KGFGFVIPE--TPDSDDVYVHANDMNGA----LH-GDTV-FVRVEKEAGGNRLEGQIIRI 129 Query: 73 VPK 75 V + Sbjct: 130 VER 132 >gi|323704810|ref|ZP_08116387.1| transcription termination factor Rho [Thermoanaerobacterium xylanolyticum LX-11] gi|323535736|gb|EGB25510.1| transcription termination factor Rho [Thermoanaerobacterium xylanolyticum LX-11] Length = 613 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 GYGF+ + + D+++ +S + GL G V Sbjct: 256 GYGFLRVDNFIQGNKDIYISQSQIRRFGLKV---GDKV 290 >gi|304440569|ref|ZP_07400455.1| ribonuclease R [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370945|gb|EFM24565.1| ribonuclease R [Peptoniphilus duerdenii ATCC BAA-1640] Length = 705 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 6/43 (13%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 + K +GF+ P+ + G D+F + + +GQ V Sbjct: 136 FQSSKDFGFVVPDD-KKVGTDIF-----IRGEDINGAEDGQKV 172 >gi|295697776|ref|YP_003591014.1| transcription termination factor Rho [Bacillus tusciae DSM 2912] gi|295413378|gb|ADG07870.1| transcription termination factor Rho [Bacillus tusciae DSM 2912] Length = 418 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 GYGF+ P G S +D+++ S + L G V+ Sbjct: 61 GYGFLRPIGYLPSNEDIYVAASQIRRFDLRT---GDRVS 96 >gi|319789562|ref|YP_004151195.1| ribonuclease R [Thermovibrio ammonificans HB-1] gi|317114064|gb|ADU96554.1| ribonuclease R [Thermovibrio ammonificans HB-1] Length = 716 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 G+GF+ P + G VF+ ++A A G +V + V+ G+ + + ++ Sbjct: 89 GFGFVDP---IDGGKGVFVPGRSMAGA-----MNGDIVAVEIVKEGREGRREGKIVSVIE 140 Query: 75 KS 76 ++ Sbjct: 141 RA 142 >gi|331082611|ref|ZP_08331734.1| transcription termination factor Rho [Lachnospiraceae bacterium 6_1_63FAA] gi|330400230|gb|EGG79872.1| transcription termination factor Rho [Lachnospiraceae bacterium 6_1_63FAA] Length = 451 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGFI + +DV++ S + L Sbjct: 92 GYGFIRSDNYLPGENDVYVSPSQIRRFNLKT 122 >gi|260589195|ref|ZP_05855108.1| transcription termination factor Rho [Blautia hansenii DSM 20583] gi|260540276|gb|EEX20845.1| transcription termination factor Rho [Blautia hansenii DSM 20583] Length = 451 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGFI + +DV++ S + L Sbjct: 92 GYGFIRSDNYLPGENDVYVSPSQIRRFNLKT 122 >gi|195997971|ref|XP_002108854.1| hypothetical protein TRIADDRAFT_52268 [Trichoplax adhaerens] gi|190589630|gb|EDV29652.1| hypothetical protein TRIADDRAFT_52268 [Trichoplax adhaerens] Length = 693 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 14 KG-YGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 KG YGFI + F H + V+ A G V + +Q NGK A ++ Sbjct: 584 KGDYGFIEYHEGEF--KNFFFHMNDVSRAD-ATFKVGDTVQF-VIQQQRNGKTHAIQIRT 639 Query: 73 VPKSSN 78 + Sbjct: 640 ISSKGE 645 >gi|291562234|emb|CBL41050.1| transcription termination factor Rho [butyrate-producing bacterium SS3/4] Length = 607 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 8/54 (14%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 G+GFI E +DV++ S + + G D ++ K + E Sbjct: 246 GFGFIRCENFLPGDNDVYVAPSQIRRFNMKT---G-----DIIRGSRRVKSATE 291 >gi|113474604|ref|YP_720665.1| hypothetical protein Tery_0765 [Trichodesmium erythraeum IMS101] gi|110165652|gb|ABG50192.1| Tetratricopeptide TPR_2 [Trichodesmium erythraeum IMS101] Length = 1180 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Query: 17 GFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKS 76 G I+P+ + D+F + + + + LTEG+LV + + NGK A+ + ++ + Sbjct: 1121 GRISPD---DGTLDIFFNDKYMNTESISQLTEGELVEVEVKE--KNGKRYAKQISVIEEE 1175 Query: 77 SN 78 + Sbjct: 1176 ED 1177 >gi|221632366|ref|YP_002521587.1| transcription termination factor Rho [Thermomicrobium roseum DSM 5159] gi|221156873|gb|ACM06000.1| transcription termination factor Rho [Thermomicrobium roseum DSM 5159] Length = 434 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 16/30 (53%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLF 44 G+GF+ E +DV++ +S + GL Sbjct: 80 GFGFLRGERYLPGPNDVYVSQSQIRRFGLR 109 >gi|28871079|ref|NP_793698.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213969685|ref|ZP_03397820.1| cold shock domain family protein [Pseudomonas syringae pv. tomato T1] gi|28854329|gb|AAO57393.1| cold shock domain family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213925493|gb|EEB59053.1| cold shock domain family protein [Pseudomonas syringae pv. tomato T1] Length = 72 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 1 MVHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQND 60 +V G + Y+ KG+GFI E G DVF V + + G +V ++ + Sbjct: 6 LVDTGFVNSYDSFKGFGFIRREK----GRDVFFFYDDVE-DVVNGIAMGDVVRFEVHEEP 60 Query: 61 ANGK 64 + Sbjct: 61 KGPR 64 >gi|256751365|ref|ZP_05492244.1| transcription termination factor Rho [Thermoanaerobacter ethanolicus CCSD1] gi|256749747|gb|EEU62772.1| transcription termination factor Rho [Thermoanaerobacter ethanolicus CCSD1] Length = 508 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 GYGF+ E + D+++ +S + GL G V Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFGLKV---GDKV 185 >gi|297543671|ref|YP_003675973.1| transcription termination factor Rho [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841446|gb|ADH59962.1| transcription termination factor Rho [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 508 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 GYGF+ E + D+++ +S + GL G V Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFGLKV---GDKV 185 >gi|167038495|ref|YP_001666073.1| transcription termination factor Rho [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038762|ref|YP_001661747.1| transcription termination factor Rho [Thermoanaerobacter sp. X514] gi|300913653|ref|ZP_07130970.1| transcription termination factor Rho [Thermoanaerobacter sp. X561] gi|307723332|ref|YP_003903083.1| transcription termination factor Rho [Thermoanaerobacter sp. X513] gi|320116891|ref|YP_004187050.1| transcription termination factor Rho [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853002|gb|ABY91411.1| transcription termination factor Rho [Thermoanaerobacter sp. X514] gi|166857329|gb|ABY95737.1| transcription termination factor Rho [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300890338|gb|EFK85483.1| transcription termination factor Rho [Thermoanaerobacter sp. X561] gi|307580393|gb|ADN53792.1| transcription termination factor Rho [Thermoanaerobacter sp. X513] gi|319929982|gb|ADV80667.1| transcription termination factor Rho [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 508 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 GYGF+ E + D+++ +S + GL G V Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFGLKV---GDKV 185 >gi|256004830|ref|ZP_05429804.1| ribonuclease R [Clostridium thermocellum DSM 2360] gi|255991140|gb|EEU01248.1| ribonuclease R [Clostridium thermocellum DSM 2360] gi|316941093|gb|ADU75127.1| ribonuclease R [Clostridium thermocellum DSM 1313] Length = 757 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 + K +GF+ P+ SG D+F+ + + A GQ V + V Sbjct: 142 FESSKYFGFVVPDDPRISG-DIFIPKDEINGA-----KSGQKVVAEIV 183 >gi|307265651|ref|ZP_07547204.1| transcription termination factor Rho [Thermoanaerobacter wiegelii Rt8.B1] gi|326389246|ref|ZP_08210814.1| transcription termination factor Rho [Thermoanaerobacter ethanolicus JW 200] gi|306919295|gb|EFN49516.1| transcription termination factor Rho [Thermoanaerobacter wiegelii Rt8.B1] gi|325994609|gb|EGD53033.1| transcription termination factor Rho [Thermoanaerobacter ethanolicus JW 200] Length = 508 Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 GYGF+ E + D+++ +S + GL G V Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFGLKV---GDKV 185 >gi|47563677|dbj|BAD20295.1| cold shock protein like [Pseudomonas fluorescens] Length = 18 Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 6/15 (40%), Positives = 11/15 (73%) Query: 2 VHRGSIKWYNPDKGY 16 G++KW+N +KG+ Sbjct: 4 RQTGTVKWFNDEKGF 18 >gi|223365689|pdb|2KCM|A Chain A, Solution Nmr Structure Of The N-Terminal Ob-Domain Of So_1732 From Shewanella Oneidensis. Northeast Structural Genomics Consortium Target Sor210a Length = 74 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 9/72 (12%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAV---ASAGLFNLTEGQLVTYDYVQND 60 +G + Y K YGFI + G+ FLH S + G L +G +V +D Sbjct: 2 KGKVVSYLAAKKYGFIQGD----DGESYFLHFSELLDKKDEG--KLVKGSMVHFDPTPTP 55 Query: 61 ANGKYSAENLKL 72 A +L L Sbjct: 56 KGLAAKAISLPL 67 >gi|289577384|ref|YP_003476011.1| transcription termination factor Rho [Thermoanaerobacter italicus Ab9] gi|289527097|gb|ADD01449.1| transcription termination factor Rho [Thermoanaerobacter italicus Ab9] Length = 508 Score = 34.5 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 GYGF+ E + D+++ +S + GL G V Sbjct: 151 GYGFLRVENFVQGPKDIYISQSQIRRFGLKV---GDKV 185 >gi|325263705|ref|ZP_08130438.1| transcription termination factor Rho [Clostridium sp. D5] gi|324030743|gb|EGB92025.1| transcription termination factor Rho [Clostridium sp. D5] Length = 449 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGFI E +DV++ S + L Sbjct: 90 GYGFIRCENYLPGENDVYVSPSQIRRFNLKT 120 >gi|154502578|ref|ZP_02039638.1| hypothetical protein RUMGNA_00391 [Ruminococcus gnavus ATCC 29149] gi|153796770|gb|EDN79190.1| hypothetical protein RUMGNA_00391 [Ruminococcus gnavus ATCC 29149] Length = 445 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGFI E +DV++ S + L Sbjct: 86 GYGFIRCENYLPGENDVYVSPSQIRRFNLKT 116 >gi|125972670|ref|YP_001036580.1| ribonuclease R [Clostridium thermocellum ATCC 27405] gi|281416859|ref|ZP_06247879.1| ribonuclease R [Clostridium thermocellum JW20] gi|125712895|gb|ABN51387.1| RNAse R [Clostridium thermocellum ATCC 27405] gi|281408261|gb|EFB38519.1| ribonuclease R [Clostridium thermocellum JW20] Length = 757 Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYV 57 + K +GF+ P+ SG D+F+ + + A GQ V + V Sbjct: 142 FESSKYFGFVVPDDPRISG-DIFIPKDEINGA-----KSGQKVVAEIV 183 >gi|322834329|ref|YP_004214356.1| Cold-shock protein DNA-binding protein [Rahnella sp. Y9602] gi|321169530|gb|ADW75229.1| Cold-shock protein DNA-binding protein [Rahnella sp. Y9602] Length = 159 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 W+ DKG+GFI E+GD+ + H + A + + VT++ N+ SA Sbjct: 8 WF-EDKGFGFI----KDENGDNRYFHV--IKVANPELIKKDAAVTFEPTTNNKG--LSAF 58 Query: 69 NLKLVPKS 76 +K+ P+S Sbjct: 59 AVKVEPES 66 >gi|313231855|emb|CBY08967.1| unnamed protein product [Oikopleura dioica] Length = 213 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63 G++ ++ KG+GF+ + E G F H S V S + EG +V Y + Sbjct: 115 GTVSAFSRTKGHGFLNSD---EDGKQEFFHVSDVVSQIVP--KEGDVVKYRVIPIPPKYE 169 Query: 64 KYSAENLKLVPKS 76 KY A + ++ + Sbjct: 170 KYQAVQVTIMNEE 182 >gi|239628693|ref|ZP_04671724.1| transcription termination factor Rho [Clostridiales bacterium 1_7_47_FAA] gi|239518839|gb|EEQ58705.1| transcription termination factor Rho [Clostridiales bacterium 1_7_47FAA] Length = 593 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 G+GFI E +DV++ S + L G D + + K + E Sbjct: 232 GFGFIRCENFLPGENDVYVAPSQIRRFNLKT---G-----DIIAGNRRVKSATE 277 >gi|227499726|ref|ZP_03929826.1| ribonuclease R [Anaerococcus tetradius ATCC 35098] gi|227218193|gb|EEI83456.1| ribonuclease R [Anaerococcus tetradius ATCC 35098] Length = 708 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 Y +KG+GF+ P+ + GDD+F+ A V + + NGK + Sbjct: 142 YQKNKGFGFVIPDDRSF-GDDIFIGEKNSLRAKNK-----DKVVVEIIDYPKNGKPEGKI 195 Query: 70 LKLV 73 ++++ Sbjct: 196 IEII 199 >gi|301336862|ref|ZP_07225064.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum MopnTet14] Length = 692 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASA 41 P KG+GF++P+ D+F+ S + A Sbjct: 27 PKKGFGFVSPDQPDLYPFDIFVPASDLKGA 56 >gi|225386741|ref|ZP_03756505.1| hypothetical protein CLOSTASPAR_00489 [Clostridium asparagiforme DSM 15981] gi|225047152|gb|EEG57398.1| hypothetical protein CLOSTASPAR_00489 [Clostridium asparagiforme DSM 15981] Length = 612 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 G+GFI E +DV++ S + L G D + + K + E Sbjct: 251 GFGFIRCENFLPGENDVYVAPSQIRRFNLKT---G-----DIISGNRRVKSATE 296 >gi|160937849|ref|ZP_02085208.1| hypothetical protein CLOBOL_02741 [Clostridium bolteae ATCC BAA-613] gi|158439288|gb|EDP17041.1| hypothetical protein CLOBOL_02741 [Clostridium bolteae ATCC BAA-613] Length = 565 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 G+GFI E +DV++ S + L G D + + K + E Sbjct: 204 GFGFIRCENFLPGENDVYVAPSQIRRFNLKT---G-----DIIVGNRRVKSATE 249 >gi|15835291|ref|NP_297050.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Nigg] gi|270285465|ref|ZP_06194859.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Nigg] gi|270289476|ref|ZP_06195778.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Weiss] gi|14195179|sp|Q9PK00|RNR_CHLMU RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB protein homolog gi|8163286|gb|AAF73588.1| exoribonuclease, VacB/Rnb family [Chlamydia muridarum Nigg] Length = 692 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASA 41 P KG+GF++P+ D+F+ S + A Sbjct: 27 PKKGFGFVSPDQPDLYPFDIFVPASDLKGA 56 >gi|330828260|ref|YP_004391212.1| ribonuclease R [Aeromonas veronii B565] gi|328803396|gb|AEB48595.1| Ribonuclease R [Aeromonas veronii B565] Length = 797 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVP 74 G+GF+ PEG G D++L+ + L G V + D G+ A ++L+ Sbjct: 96 GFGFLRPEG---GGPDLYLNNREMQR-----LMHGDYVLVQPTEIDRKGRQEARLVRLLK 147 >gi|302874266|ref|YP_003842899.1| hypothetical protein Clocel_1382 [Clostridium cellulovorans 743B] gi|307689470|ref|ZP_07631916.1| hypothetical protein Ccel74_15036 [Clostridium cellulovorans 743B] gi|302577123|gb|ADL51135.1| hypothetical protein Clocel_1382 [Clostridium cellulovorans 743B] Length = 150 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 21/37 (56%) Query: 41 AGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77 +G + EGQ VT D + + K AE++K +P ++ Sbjct: 77 SGFVTVIEGQRVTNDIAETNTKIKEVAESIKKLPTTT 113 >gi|103486036|ref|YP_615597.1| polynucleotide phosphorylase/polyadenylase [Sphingopyxis alaskensis RB2256] gi|123380103|sp|Q1GVQ8|PNP_SPHAL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|98976113|gb|ABF52264.1| 3' exoribonuclease [Sphingopyxis alaskensis RB2256] Length = 771 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%) Query: 27 SGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D +H S + + + L+EGQ V ++ D GK Sbjct: 644 GGKDGLVHVSEIRNERVEKVADVLSEGQDVKVKVLEIDPRGK 685 >gi|323691603|ref|ZP_08105866.1| RNA binding S1 domain-containing protein [Clostridium symbiosum WAL-14673] gi|323504329|gb|EGB20128.1| RNA binding S1 domain-containing protein [Clostridium symbiosum WAL-14673] Length = 337 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 12/58 (20%) Query: 5 GSIKWYNPDKGYG-FITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYV 57 G++ + K YG FI+ E +H S ++S + + L EGQ VT + Sbjct: 241 GTV---DSIKPYGAFISLENGLSG----LVHISQISSKRIPHPSAVLKEGQKVTVKII 291 >gi|148244775|ref|YP_001219469.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA] gi|146326602|dbj|BAF61745.1| cold shock protein [Candidatus Vesicomyosocius okutanii HA] Length = 105 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Query: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 +G++ + KGYGFI + G+ F+H+ + + L V ++ QN G Sbjct: 6 QGTVAQF-GTKGYGFI----MGDDGEKYFVHQKNIFNK--SRLKVNTRVVFN-TQNSEKG 57 >gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium KB13] gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium KB13] Length = 710 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I G D LH S +A + + L+EG V ++ D GK Sbjct: 640 FGAIVQLIP---GKDGLLHISQIAHERVKSVKDHLSEGDEVKVKVIEVDQKGK 689 >gi|323482961|ref|ZP_08088359.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163] gi|323403741|gb|EGA96041.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163] Length = 337 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 12/58 (20%) Query: 5 GSIKWYNPDKGYG-FITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYV 57 G++ + K YG FI+ E +H S ++S + + L EGQ VT + Sbjct: 241 GTV---DSIKPYGAFISLENGLSG----LVHISQISSKRIPHPSAVLKEGQKVTVKII 291 >gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum seropedicae SmR1] gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 712 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 12/67 (17%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYSAENLK 71 +G I G D LH S +A+ + L EGQ V ++ D G+ LK Sbjct: 640 FGAIVQVLP---GKDGLLHISQIANERVNAVADYLKEGQQVRVKVLETDDRGR-----LK 691 Query: 72 LVPKSSN 78 L K++ Sbjct: 692 LSMKAAQ 698 >gi|301787885|ref|XP_002929362.1| PREDICTED: LOW QUALITY PROTEIN: B box-binding protein-like, partial [Ailuropoda melanoleuca] Length = 283 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 12/76 (15%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDA 61 + G++K + GY FI DVF+ ++AV L V D V Sbjct: 42 MVLGTVKRFPVRNGYXFIN----RNDTTDVFVAQTAVKKNPRQCLC---SVGLDLV---- 90 Query: 62 NGKYSAENLKLVPKSS 77 G +AE L L ++ Sbjct: 91 -GAKAAEQLMLRMQAQ 105 >gi|154482493|ref|ZP_02024941.1| hypothetical protein EUBVEN_00160 [Eubacterium ventriosum ATCC 27560] gi|149736694|gb|EDM52580.1| hypothetical protein EUBVEN_00160 [Eubacterium ventriosum ATCC 27560] Length = 541 Score = 34.2 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSA 67 G+GFI + DDV++ S + L G VT + K+ A Sbjct: 179 GFGFIRCDNYLPGDDDVYVAPSQIKRFHLKT---GDFVTGQVREKRETEKFGA 228 >gi|153870561|ref|ZP_01999936.1| secreted protein [Beggiatoa sp. PS] gi|152072972|gb|EDN70063.1| secreted protein [Beggiatoa sp. PS] Length = 796 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 18 FITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKLVPKSS 77 FI+ + +S DVF+H + V G+ L +T++ Q A + +LV + Sbjct: 22 FIS---TPQSDKDVFVHVNEVE--GVSMLKSKMQLTFEIKQGPKG--PQAYHARLVQTET 74 Query: 78 N 78 Sbjct: 75 Q 75 >gi|148264740|ref|YP_001231446.1| ribonuclease R [Geobacter uraniireducens Rf4] gi|146398240|gb|ABQ26873.1| RNAse R [Geobacter uraniireducens Rf4] Length = 763 Score = 34.2 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 14/64 (21%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTE---GQLVTYDYVQNDANGKYSAENLK 71 GYGF+ PE E D+F+ L E G V V +GK +K Sbjct: 79 GYGFVIPEAGKE---DIFIPA--------RYLRENMHGDKVEVRIVAKKRDGKQEGRIVK 127 Query: 72 LVPK 75 V + Sbjct: 128 TVER 131 >gi|301166788|emb|CBW26365.1| putative polyribonucleotide nucleotidyltransferase [Bacteriovorax marinus SJ] Length = 709 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Query: 33 LHRSAVASAGLFN----LTEGQLVTYDYVQNDANG--KYSAENLKLVPKSSN 78 +H S ++ + + L+EG V+ V+ D G K SA+ +K V K ++ Sbjct: 657 VHVSELSDERVKDVSEYLSEGDKVSVKVVEVDRMGRLKLSAKAVKPVEKKAD 708 >gi|148556711|ref|YP_001264293.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas wittichii RW1] gi|187611293|sp|A5VCY9|PNP_SPHWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148501901|gb|ABQ70155.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas wittichii RW1] Length = 774 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%) Query: 27 SGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D +H S + + + L+EGQ V ++ D GK Sbjct: 642 GGKDGLVHVSEIKNERVEKVADALSEGQEVKVKVLEIDNRGK 683 >gi|225567884|ref|ZP_03776909.1| hypothetical protein CLOHYLEM_03957 [Clostridium hylemonae DSM 15053] gi|225163362|gb|EEG75981.1| hypothetical protein CLOHYLEM_03957 [Clostridium hylemonae DSM 15053] Length = 232 Score = 34.2 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGFI + +DV++ S + L Sbjct: 87 GYGFIRSDNYLPGDNDVYVSPSQIRKFNLKT 117 >gi|124483602|emb|CAM32674.1| Polyribonucleotide nucleotidyltransferase [Herbaspirillum seropedicae] Length = 712 Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 12/67 (17%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYSAENLK 71 +G I G D LH S +A+ + L EGQ V ++ D G+ LK Sbjct: 640 FGAIVQVLP---GKDGLLHISQIANERVNAVADYLKEGQQVRVKVLETDDRGR-----LK 691 Query: 72 LVPKSSN 78 L K++ Sbjct: 692 LSMKAAQ 698 >gi|304317934|ref|YP_003853079.1| transcription termination factor Rho [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779436|gb|ADL69995.1| transcription termination factor Rho [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 640 Score = 34.2 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLV 52 GYGF+ E + D+++ +S + GL G V Sbjct: 283 GYGFLRVENFIQGNKDIYISQSQIRRFGLKV---GDKV 317 >gi|88812956|ref|ZP_01128199.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis Nb-231] gi|88789734|gb|EAR20858.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis Nb-231] Length = 700 Score = 34.2 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D +H S +++ + + L EGQ V ++ D G+ Sbjct: 646 GRDGLVHISQISNRRVESVSEELAEGQRVRVKVLEVDRQGR 686 >gi|313905741|ref|ZP_07839101.1| transcription termination factor Rho [Eubacterium cellulosolvens 6] gi|313469448|gb|EFR64790.1| transcription termination factor Rho [Eubacterium cellulosolvens 6] Length = 505 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGFI + DDV++ + + L Sbjct: 146 GYGFIRSDNYLSGSDDVYVSPTQIRRLRLRT 176 >gi|328463974|gb|EGF35475.1| hypothetical protein AAULR_08366 [Lactobacillus rhamnosus MTCC 5462] Length = 46 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 5/13 (38%), Positives = 10/13 (76%) Query: 2 VHRGSIKWYNPDK 14 + G++KW+N +K Sbjct: 1 MEHGTVKWFNAEK 13 >gi|297180954|gb|ADI17157.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [uncultured gamma proteobacterium HF0070_08D07] Length = 695 Score = 34.2 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S +A + + L+EGQ V + D G+ Sbjct: 643 GKDGLLHISQIADERVESVTDYLSEGQKVEVVVLDLDQRGR 683 >gi|329767679|ref|ZP_08259198.1| transcription termination factor Rho [Gemella haemolysans M341] gi|328839029|gb|EGF88617.1| transcription termination factor Rho [Gemella haemolysans M341] Length = 422 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Query: 12 PDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLK 71 P+ G+GF+ + D+++ S + L +G V + V+ G+ A L+ Sbjct: 64 PENGFGFLRTVDYKKGETDIYISASQIRRF---ELKKGDEV-FGKVRKPREGERFAGILQ 119 Query: 72 L 72 + Sbjct: 120 V 120 >gi|323484420|ref|ZP_08089786.1| hypothetical protein HMPREF9474_01537 [Clostridium symbiosum WAL-14163] gi|323402198|gb|EGA94530.1| hypothetical protein HMPREF9474_01537 [Clostridium symbiosum WAL-14163] Length = 733 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 8/66 (12%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 KG+GF+T EG DVF + G V + D + +++ Sbjct: 100 SKGFGFVTVEGRE---KDVF-----IPGDRTGGAMHGDKVQIVIEEEDNGKRAEGCVVRV 151 Query: 73 VPKSSN 78 + +++ Sbjct: 152 LEHAND 157 >gi|149189790|ref|ZP_01868071.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1] gi|148836439|gb|EDL53395.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1] Length = 713 Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D +H S +A + L EGQ V ++ D G+ Sbjct: 645 GKDGLVHISQIAHERVEKVTDYLKEGQEVQVKVLEIDRQGR 685 >gi|119947020|ref|YP_944700.1| ribonuclease R [Psychromonas ingrahamii 37] gi|119865624|gb|ABM05101.1| RNAse R [Psychromonas ingrahamii 37] Length = 834 Score = 33.8 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 12/66 (18%) Query: 15 GYGFITPEGSTESGDDVF--LHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENLKL 72 G+GF+ E E G D+F H+ + L G V V+ D+ G+ A ++L Sbjct: 95 GFGFLKTE---EEGADLFLPAHQ-------MRLLFHGDKVLVQPVKVDSRGRTEARFVRL 144 Query: 73 VPKSSN 78 + + Sbjct: 145 LEERKE 150 >gi|8100800|gb|AAF72415.1|AF218051_5 cold shock protein [Salmonella enterica subsp. enterica serovar Enteritidis] Length = 67 Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Query: 2 VHRGSIKWYNPDKGYGFITPEGSTESGDDVF 32 + G + +Y+ KGYGFI E G DVF Sbjct: 1 MENGFVNFYDHVKGYGFIRRER----GRDVF 27 >gi|291547179|emb|CBL20287.1| transcription termination factor Rho [Ruminococcus sp. SR1/5] Length = 506 Score = 33.8 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 8/54 (14%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 GYGFI E +D+++ S + L G D +Q + K E Sbjct: 147 GYGFIRCENYMPGENDIYVSPSQIRRFNLKT---G-----DIIQGNIRIKTQGE 192 >gi|332160846|ref|YP_004297423.1| hypothetical protein YE105_C1224 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665076|gb|ADZ41720.1| hypothetical protein YE105_C1224 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 159 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + DKG+GFIT E+GD+ + H + A + +G VT++ N SA Sbjct: 8 FFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTKG--LSAFA 59 Query: 70 LKLVPKS 76 +K+ +S Sbjct: 60 VKVAIES 66 >gi|87119787|ref|ZP_01075684.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121] gi|86165263|gb|EAQ66531.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121] Length = 702 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D +H S +A + L EGQ V + DA G+ Sbjct: 644 GKDGLVHISQIAEERIRAVSDFLEEGQEVLVKVLDVDARGR 684 >gi|225029001|ref|ZP_03718193.1| hypothetical protein EUBHAL_03293 [Eubacterium hallii DSM 3353] gi|224953699|gb|EEG34908.1| hypothetical protein EUBHAL_03293 [Eubacterium hallii DSM 3353] Length = 523 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGFI E +DV++ S + L Sbjct: 163 GYGFIRCENYLPGENDVYVSPSQIRRFNLKT 193 >gi|163845761|ref|YP_001633805.1| hypothetical protein Caur_0162 [Chloroflexus aurantiacus J-10-fl] gi|222523469|ref|YP_002567939.1| putative cold-shock DNA-binding domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163667050|gb|ABY33416.1| hypothetical protein Caur_0162 [Chloroflexus aurantiacus J-10-fl] gi|222447348|gb|ACM51614.1| putative cold-shock DNA-binding domain protein [Chloroflexus sp. Y-400-fl] Length = 192 Score = 33.8 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 6/37 (16%) Query: 2 VHRGSIK-WYNPDKGYGFITPEGSTESGDDVFLHRSA 37 + +G++ WY+ +KGYGFI + F+H +A Sbjct: 5 LKQGTLSVWYD-EKGYGFIVDPQEERT----FVHITA 36 >gi|283798444|ref|ZP_06347597.1| transcription termination factor Rho [Clostridium sp. M62/1] gi|291073849|gb|EFE11213.1| transcription termination factor Rho [Clostridium sp. M62/1] gi|295090772|emb|CBK76879.1| transcription termination factor Rho [Clostridium cf. saccharolyticum K10] Length = 628 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 8/54 (14%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAE 68 G+GFI E +DV++ S + L G D V K + E Sbjct: 268 GFGFIRCENFLPGENDVYVAPSQIRRFNLKT---G-----DIVLGSRRIKTATE 313 >gi|114778695|ref|ZP_01453507.1| polyribonucleotide nucleotidyltransferase [Mariprofundus ferrooxydans PV-1] gi|114551057|gb|EAU53619.1| polyribonucleotide nucleotidyltransferase [Mariprofundus ferrooxydans PV-1] Length = 705 Score = 33.8 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%) Query: 27 SGDDVFLHRSAVASAGLF----NLTEGQLVTYDYVQNDANGK 64 G D +H S +A+ + L EGQ V ++ D GK Sbjct: 654 GGTDGLVHISQIANHRVEKVADELKEGQEVRVKVLEVDRQGK 695 >gi|285005772|ref|YP_001007202.2| hypothetical protein YE3013 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318604748|emb|CBY26246.1| putative cold-shock protein [Yersinia enterocolitica subsp. palearctica Y11] gi|330863375|emb|CBX73497.1| unknown protein [Yersinia enterocolitica W22703] Length = 159 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + DKG+GFIT E+GD+ + H + A + +G VT++ N SA Sbjct: 8 FFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTKG--LSAFA 59 Query: 70 LKLVPKS 76 +K+ +S Sbjct: 60 VKVAIES 66 >gi|238749762|ref|ZP_04611267.1| Cold shock-like protein [Yersinia rohdei ATCC 43380] gi|238712417|gb|EEQ04630.1| Cold shock-like protein [Yersinia rohdei ATCC 43380] Length = 41 Score = 33.8 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Query: 32 FLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAENL 70 +++++A+A+ +L+EGQ V + ++ G +A+ + Sbjct: 2 YVNKTAIANTKNKSLSEGQDVEFSTYRSIY-GPSAADVI 39 >gi|225575050|ref|ZP_03783660.1| hypothetical protein RUMHYD_03139 [Blautia hydrogenotrophica DSM 10507] gi|225037720|gb|EEG47966.1| hypothetical protein RUMHYD_03139 [Blautia hydrogenotrophica DSM 10507] Length = 484 Score = 33.8 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 GYGFI E +D+++ +S + L Sbjct: 126 GYGFIRCENYLPGENDIYVSQSQIRKFNLKT 156 >gi|238785728|ref|ZP_04629702.1| Cold-shock DNA-binding domain protein [Yersinia bercovieri ATCC 43970] gi|238713368|gb|EEQ05406.1| Cold-shock DNA-binding domain protein [Yersinia bercovieri ATCC 43970] Length = 159 Score = 33.8 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + DKG+GFIT E+GD+ + H + A + +G VT++ N SA Sbjct: 8 FFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTKG--LSAFA 59 Query: 70 LKLVPKS 76 +K+ +S Sbjct: 60 VKVAIES 66 >gi|302873634|ref|YP_003842267.1| ribonuclease R [Clostridium cellulovorans 743B] gi|307688185|ref|ZP_07630631.1| ribonuclease R [Clostridium cellulovorans 743B] gi|302576491|gb|ADL50503.1| ribonuclease R [Clostridium cellulovorans 743B] Length = 785 Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 8/67 (11%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY-SAENLK 71 KG+GF+ P+ E DVF+ S + A G V + NGK E ++ Sbjct: 76 SKGFGFVIPD--EEGVKDVFIPSSQMGGA-----IHGDRVVAKITFGEKNGKKCEGEIIR 128 Query: 72 LVPKSSN 78 ++ +++ Sbjct: 129 ILERNTK 135 >gi|162418309|ref|YP_001606346.1| cold-shock DNA-binding domain-containing protein [Yersinia pestis Angola] gi|162351124|gb|ABX85072.1| cold-shock DNA-binding domain protein [Yersinia pestis Angola] Length = 159 Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + DKG+GFIT E+GD+ + H + A + +G VT++ N SA Sbjct: 8 FFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTKG--LSAFA 59 Query: 70 LKLVPKS 76 +K+ +S Sbjct: 60 VKVAIES 66 >gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase/polyadenylase [Herminiimonas arsenicoxydans] gi|187610275|sp|A4G647|PNP_HERAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|133738937|emb|CAL61984.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Herminiimonas arsenicoxydans] Length = 710 Score = 33.8 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYS 66 +G I G D LH S +A+ + L EGQ V ++ D G+ Sbjct: 641 FGAIVQVMP---GKDGLLHISQIANERVNAVADYLKEGQQVRVKVLETDDRGRLK 692 >gi|237745432|ref|ZP_04575912.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes HOxBLS] gi|229376783|gb|EEO26874.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes HOxBLS] Length = 707 Score = 33.8 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I G D LH S +AS + L EGQ V ++ D G+ Sbjct: 640 FGAIVQILP---GKDGLLHISQIASERVNAVSDYLEEGQSVRVKVLETDERGR 689 >gi|289616424|emb|CBI56951.1| unnamed protein product [Sordaria macrospora] Length = 348 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 9 WYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVT 53 W K GF++P+ D+ HRSA + G + G ++ Sbjct: 52 WTADQKDNGFVSPDAF--GTPDIICHRSATPAGGHATVKAGDKIS 94 >gi|225374513|ref|ZP_03751734.1| hypothetical protein ROSEINA2194_00128 [Roseburia inulinivorans DSM 16841] gi|225213751|gb|EEG96105.1| hypothetical protein ROSEINA2194_00128 [Roseburia inulinivorans DSM 16841] Length = 473 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 14/31 (45%) Query: 15 GYGFITPEGSTESGDDVFLHRSAVASAGLFN 45 G+GFI + +DV++ S + L Sbjct: 114 GFGFIRSDNYLPGENDVYVSPSQIRKFNLKT 144 >gi|145477639|ref|XP_001424842.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124391909|emb|CAK57444.1| unnamed protein product [Paramecium tetraurelia] Length = 383 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHR 35 G +K+YN K YGF + ++ D+F+H+ Sbjct: 303 GYLKFYNESKQYGFFLDD---KNKKDIFVHQ 330 >gi|313242234|emb|CBY34398.1| unnamed protein product [Oikopleura dioica] Length = 157 Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 5 GSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDAN-G 63 G++ ++ KG+GF+ + E G F H S V S + EG +V Y + Sbjct: 59 GTVSAFSRTKGHGFLNSD---EDGKQEFFHVSDVVSQIVP--KEGDVVKYRVIPIPPKYE 113 Query: 64 KYSAENLKLVPKS 76 KY A + ++ + Sbjct: 114 KYQAVQVTIMNEE 126 >gi|168217054|ref|ZP_02642679.1| ribonuclease R [Clostridium perfringens NCTC 8239] gi|182380798|gb|EDT78277.1| ribonuclease R [Clostridium perfringens NCTC 8239] Length = 751 Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 KG+GF+ P+ E DVF+ ++A+ A G V V+ GK Sbjct: 76 QKGFGFLIPD--EEGVTDVFIPKNALNGA-----MNGDRVLGKVVKESQEGKR 121 >gi|18310278|ref|NP_562212.1| ribonuclease R [Clostridium perfringens str. 13] gi|18144958|dbj|BAB81002.1| ribonuclease R [Clostridium perfringens str. 13] Length = 751 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 KG+GF+ P+ E DVF+ ++A+ A G V V+ GK Sbjct: 76 QKGFGFLIPD--EEGVTDVFIPKNALNGA-----MNGDRVLGKVVKESQEGKR 121 >gi|237747627|ref|ZP_04578107.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes OXCC13] gi|229378989|gb|EEO29080.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes OXCC13] Length = 713 Score = 33.8 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I G D LH S +AS + L EGQ V ++ D G+ Sbjct: 640 FGAIVQILP---GKDGLLHISQIASERVNAVTDYLEEGQAVRVKVLETDDRGR 689 >gi|238028147|ref|YP_002912378.1| polynucleotide phosphorylase/polyadenylase [Burkholderia glumae BGR1] gi|237877341|gb|ACR29674.1| Polyribonucleotide nucleotidyltransferase [Burkholderia glumae BGR1] Length = 709 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 28 GDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 G D LH S + + + + L EGQ+V +Q D G+ Sbjct: 651 GKDGLLHISEIVNERVKDINDYLKEGQVVKIKVIQVDEKGR 691 >gi|170025253|ref|YP_001721758.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|186894464|ref|YP_001871576.1| cold-shock DNA-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|169751787|gb|ACA69305.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis YPIII] gi|186697490|gb|ACC88119.1| cold-shock DNA-binding domain protein [Yersinia pseudotuberculosis PB1/+] Length = 159 Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 10 YNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYSAEN 69 + DKG+GFIT E+GD+ + H + A + +G VT++ N SA Sbjct: 8 FFEDKGFGFIT----DENGDNRYFHV--IKVANPEMIKKGAEVTFEPTTNTKG--LSAFA 59 Query: 70 LKLVPKS 76 +K+ +S Sbjct: 60 VKVAIES 66 >gi|110800238|ref|YP_695945.1| ribonuclease R [Clostridium perfringens ATCC 13124] gi|110674885|gb|ABG83872.1| ribonuclease R [Clostridium perfringens ATCC 13124] Length = 751 Score = 33.8 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKY 65 KG+GF+ P+ E DVF+ ++A+ A G V V+ GK Sbjct: 76 QKGFGFLIPD--EEGVTDVFIPKNALNGA-----MNGDRVLGKVVKESQEGKR 121 >gi|329901002|ref|ZP_08272663.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327549290|gb|EGF33865.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 717 Score = 33.8 bits (77), Expect = 9.4, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGKYS 66 +G I G D LH S +A+ + L EGQ V ++ D G+ Sbjct: 640 FGAIVQVMP---GKDGLLHISQIANERVNAVADYLKEGQQVRVKVLETDDRGRLK 691 >gi|260888570|ref|ZP_05899833.1| ribonuclease R [Selenomonas sputigena ATCC 35185] gi|330838137|ref|YP_004412717.1| ribonuclease R [Selenomonas sputigena ATCC 35185] gi|260861767|gb|EEX76267.1| ribonuclease R [Selenomonas sputigena ATCC 35185] gi|329745901|gb|AEB99257.1| ribonuclease R [Selenomonas sputigena ATCC 35185] Length = 867 Score = 33.8 bits (77), Expect = 9.4, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Query: 12 PDKGYGFITPEGSTESGD-DVFL 33 KG+GFI PE + D D+F+ Sbjct: 78 SAKGFGFIIPEVREKETDSDIFV 100 >gi|15895663|ref|NP_349012.1| hypothetical protein CA_C2397 [Clostridium acetobutylicum ATCC 824] gi|15025410|gb|AAK80352.1|AE007739_8 Hypothetical protein CA_C2397 [Clostridium acetobutylicum ATCC 824] gi|325509813|gb|ADZ21449.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 238 Score = 33.4 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 18/88 (20%) Query: 1 MVHRGSIKWY----------NPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQ 50 M G I+W+ N +GFI G D++ ++ V L LT G Sbjct: 1 MREIGLIRWFGGYNLRTKKMND---FGFI----RDNKGQDIYFNKGHVQCK-LKELTPGI 52 Query: 51 LVTYDYVQNDANGKYSAENLKLVPKSSN 78 +T++ N N + A +KL+ ++ Sbjct: 53 GITFERGVNFKNDREQAIRIKLLKDEND 80 >gi|307110277|gb|EFN58513.1| hypothetical protein CHLNCDRAFT_140575 [Chlorella variabilis] Length = 770 Score = 33.4 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 21 PEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYD 55 P G E G + + S S+ L GQ V +D Sbjct: 422 PAGGVEEGARIRVTFSLFQSSMFRRLRPGQKVDFD 456 >gi|149927537|ref|ZP_01915791.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105] gi|149823810|gb|EDM83036.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105] Length = 714 Score = 33.4 bits (76), Expect = 9.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%) Query: 16 YGFITPEGSTESGDDVFLHRSAVASAGLFN----LTEGQLVTYDYVQNDANGK 64 +G I S G D LH S +A+ + L EGQ+V ++ D G+ Sbjct: 640 FGAIV---SVLPGKDGLLHISQIANERVNTVGDFLKEGQVVKVKVLEADEKGR 689 >gi|118442907|ref|YP_877499.1| ribonuclease R [Clostridium novyi NT] gi|118133363|gb|ABK60407.1| ribonuclease R [Clostridium novyi NT] Length = 745 Score = 33.4 bits (76), Expect = 9.9, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 9/67 (13%) Query: 13 DKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANGKYS-AENLK 71 +GYGF+ P+ + DVF+ S + A G V ++ + NGK E ++ Sbjct: 76 QRGYGFVIPD---DDSPDVFVISSYMNGA-----MHGDRVVAQVLKEENNGKRREGEIIR 127 Query: 72 LVPKSSN 78 + +++ Sbjct: 128 VTERANE 134 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.315 0.189 0.751 Lambda K H 0.267 0.0576 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,102,015,577 Number of Sequences: 14124377 Number of extensions: 101688739 Number of successful extensions: 170541 Number of sequences better than 10.0: 5588 Number of HSP's better than 10.0 without gapping: 7195 Number of HSP's successfully gapped in prelim test: 3010 Number of HSP's that attempted gapping in prelim test: 152315 Number of HSP's gapped (non-prelim): 11281 length of query: 78 length of database: 4,842,793,630 effective HSP length: 49 effective length of query: 29 effective length of database: 4,150,699,157 effective search space: 120370275553 effective search space used: 120370275553 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.5 bits) S2: 77 (33.8 bits)